Library	Species	GC	N50	L50	MLST_Allele_Profile	MLST_Seq_Type	SeroProf	AqResGeneCount	AqResGeneList	MutResGeneCount	MutResGeneList	PlasCount	PlasList	MLST_Loc_1	MLST_Loc1_ID	MLST_Loc1_Cov	MLST_Loc1_Allele	MLST_Loc_2	MLST_Loc2_ID	MLST_Loc2_Cov	MLST_Loc2_Allele	MLST_Loc_3	MLST_Loc3_ID	MLST_Loc3_Cov	MLST_Loc3_Allele	MLST_Loc_4	MLST_Loc4_ID	MLST_Loc4_Cov	MLST_Loc4_Allele	MLST_Loc_5	MLST_Loc5_ID	MLST_Loc5_Cov	MLST_Loc5_Allele	MLST_Loc_6	MLST_Loc6_ID	MLST_Loc6_Cov	MLST_Loc6_Allele	MLST_Loc_7	MLST_Loc7_ID	MLST_Loc7_Cov	MLST_Loc7_Allele	Serotype1	Serotype2	Serotype3	Subspecies	SeroName	SeroNote	Antigen1	Antigen2	Antigen3	ResGene1	ResID1	ResQ_T_Len1	ResContig1	ResContig1Pos	ResPredPheno1	ResAccNo1	ResGene2	ResID2	ResQ_T_Len2	ResContig2	ResContig2Pos	ResPredPheno2	ResAccNo2	ResGene3	ResID3	ResQ_T_Len3	ResContig3	ResContig3Pos	ResPredPheno3	ResAccNo3	ResGene4	ResID4	ResQ_T_Len4	ResContig4	ResContig4Pos	ResPredPheno4	ResAccNo4	ResGene5	ResID5	ResQ_T_Len5	ResContig5	ResContig5Pos	ResPredPheno5	ResAccNo5	ResGene6	ResID6	ResQ_T_Len6	ResContig6	ResContig6Pos	ResPredPheno6	ResAccNo6	ResGene7	ResID7	ResQ_T_Len7	ResContig7	ResContig7Pos	ResPredPheno7	ResAccNo7	ResGene8	ResID8	ResQ_T_Len8	ResContig8	ResContig8Pos	ResPredPheno8	ResAccNo8	ResGene9	ResID9	ResQ_T_Len9	ResContig9	ResContig9Pos	ResPredPheno9	ResAccNo9	ResGene10	ResID10	ResQ_T_Len10	ResContig10	ResContig10Pos	ResPredPheno10	ResAccNo10	ResGene11	ResID11	ResQ_T_Len11	ResContig11	ResContig11Pos	ResPredPheno11	ResAccNo11	ResGene12	ResID12	ResQ_T_Len12	ResContig12	ResContig12Pos	ResPredPheno12	ResAccNo12	ResGene13	ResID13	ResQ_T_Len13	ResContig13	ResContig13Pos	ResPredPheno13	ResAccNo13	ResGene14	ResID14	ResQ_T_Len14	ResContig14	ResContig14Pos	ResPredPheno14	ResAccNo14	ResGene15	ResID15	ResQ_T_Len15	ResContig15	ResContig15Pos	ResPredPheno15	ResAccNo15	ResGene16	ResID16	ResQ_T_Len16	ResContig16	ResContig16Pos	ResPredPheno16	ResAccNo16	ResGene17	ResID17	ResQ_T_Len17	ResContig17	ResContig17Pos	ResPredPheno17	ResAccNo17	ResGene18	ResID18	ResQ_T_Len18	ResContig18	ResContig18Pos	ResPredPheno18	ResAccNo18	ResGene19	ResID19	ResQ_T_Len19	ResContig19	ResContig19Pos	ResPredPheno19	ResAccNo19	ResGene20	ResID20	ResQ_T_Len20	ResContig20	ResContig20Pos	ResPredPheno20	ResAccNo20	ResGene21	ResID21	ResQ_T_Len21	ResContig21	ResContig21Pos	ResPredPheno21	ResAccNo21	ResGene22	ResID22	ResQ_T_Len22	ResContig22	ResContig22Pos	ResPredPheno22	ResAccNo22	ResGene23	ResID23	ResQ_T_Len23	ResContig23	ResContig23Pos	ResPredPheno23	ResAccNo23	ResGene24	ResID24	ResQ_T_Len24	ResContig24	ResContig24Pos	ResPredPheno24	ResAccNo24	ResGene25	ResID25	ResQ_T_Len25	ResContig25	ResContig25Pos	ResPredPheno25	ResAccNo25	ResGene26	ResID26	ResQ_T_Len26	ResContig26	ResContig26Pos	ResPredPheno26	ResAccNo26	ResGene27	ResID27	ResQ_T_Len27	ResContig27	ResContig27Pos	ResPredPheno27	ResAccNo27	ResGene28	ResID28	ResQ_T_Len28	ResContig28	ResContig28Pos	ResPredPheno28	ResAccNo28	ResGene29	ResID29	ResQ_T_Len29	ResContig29	ResContig29Pos	ResPredPheno29	ResAccNo29	ResGene30	ResID30	ResQ_T_Len30	ResContig30	ResContig30Pos	ResPredPheno30	ResAccNo30	ResGene31	ResID31	ResQ_T_Len31	ResContig31	ResContig31Pos	ResPredPheno31	ResAccNo31	ResGene32	ResID32	ResQ_T_Len32	ResContig32	ResContig32Pos	ResPredPheno32	ResAccNo32	ResGene33	ResID33	ResQ_T_Len33	ResContig33	ResContig33Pos	ResPredPheno33	ResAccNo33	ResGene34	ResID34	ResQ_T_Len34	ResContig34	ResContig34Pos	ResPredPheno34	ResAccNo34	ResGene35	ResID35	ResQ_T_Len35	ResContig35	ResContig35Pos	ResPredPheno35	ResAccNo35	ResGene36	ResID36	ResQ_T_Len36	ResContig36	ResContig36Pos	ResPredPheno36	ResAccNo36	ResGene37	ResID37	ResQ_T_Len37	ResContig37	ResContig37Pos	ResPredPheno37	ResAccNo37	ResGene38	ResID38	ResQ_T_Len38	ResContig38	ResContig38Pos	ResPredPheno38	ResAccNo38	ResGene39	ResID39	ResQ_T_Len39	ResContig39	ResContig39Pos	ResPredPheno39	ResAccNo39	ResGene40	ResID40	ResQ_T_Len40	ResContig40	ResContig40Pos	ResPredPheno40	ResAccNo40	ResGene41	ResID41	ResQ_T_Len41	ResContig41	ResContig41Pos	ResPredPheno41	ResAccNo41	ResGene42	ResID42	ResQ_T_Len42	ResContig42	ResContig42Pos	ResPredPheno42	ResAccNo42	ResGene43	ResID43	ResQ_T_Len43	ResContig43	ResContig43Pos	ResPredPheno43	ResAccNo43	ResGene44	ResID44	ResQ_T_Len44	ResContig44	ResContig44Pos	ResPredPheno44	ResAccNo44	ResGene45	ResID45	ResQ_T_Len45	ResContig45	ResContig45Pos	ResPredPheno45	ResAccNo45	ResGene46	ResID46	ResQ_T_Len46	ResContig46	ResContig46Pos	ResPredPheno46	ResAccNo46	ResGene47	ResID47	ResQ_T_Len47	ResContig47	ResContig47Pos	ResPredPheno47	ResAccNo47	ResGene48	ResID48	ResQ_T_Len48	ResContig48	ResContig48Pos	ResPredPheno48	ResAccNo48	ResGene49	ResID49	ResQ_T_Len49	ResContig49	ResContig49Pos	ResPredPheno49	ResAccNo49	ResGene50	ResID50	ResQ_T_Len50	ResContig50	ResContig50Pos	ResPredPheno50	ResAccNo50	ResGene51	ResID51	ResQ_T_Len51	ResContig51	ResContig51Pos	ResPredPheno51	ResAccNo51	ResGene52	ResID52	ResQ_T_Len52	ResContig52	ResContig52Pos	ResPredPheno52	ResAccNo52	ResGene53	ResID53	ResQ_T_Len53	ResContig53	ResContig53Pos	ResPredPheno53	ResAccNo53	ResGene54	ResID54	ResQ_T_Len54	ResContig54	ResContig54Pos	ResPredPheno54	ResAccNo54	ResGene55	ResID55	ResQ_T_Len55	ResContig55	ResContig55Pos	ResPredPheno55	ResAccNo55	ResGene56	ResID56	ResQ_T_Len56	ResContig56	ResContig56Pos	ResPredPheno56	ResAccNo56	ResGene57	ResID57	ResQ_T_Len57	ResContig57	ResContig57Pos	ResPredPheno57	ResAccNo57	ResGene58	ResID58	ResQ_T_Len58	ResContig58	ResContig58Pos	ResPredPheno58	ResAccNo58	ResGene59	ResID59	ResQ_T_Len59	ResContig59	ResContig59Pos	ResPredPheno59	ResAccNo59	ResGene60	ResID60	ResQ_T_Len60	ResContig60	ResContig60Pos	ResPredPheno60	ResAccNo60	ResGene61	ResID61	ResQ_T_Len61	ResContig61	ResContig61Pos	ResPredPheno61	ResAccNo61	ResGene62	ResID62	ResQ_T_Len62	ResContig62	ResContig62Pos	ResPredPheno62	ResAccNo62	ResGene63	ResID63	ResQ_T_Len63	ResContig63	ResContig63Pos	ResPredPheno63	ResAccNo63	ResGene64	ResID64	ResQ_T_Len64	ResContig64	ResContig64Pos	ResPredPheno64	ResAccNo64	ResGene65	ResID65	ResQ_T_Len65	ResContig65	ResContig65Pos	ResPredPheno65	ResAccNo65	Mutation1	NucChange1	AAChange1	MutRes1	MutPMResID1	Mutation2	NucChange2	AAChange2	MutRes2	MutPMResID2	Mutation3	NucChange3	AAChange3	MutRes3	MutPMResID3	Mutation4	NucChange4	AAChange4	MutRes4	MutPMResID4	PlasDB1	Plas1	PlasID1	PlasQ_T_Len1	PlasContig1	PlasContig1Pos	PlasDB2	Plas2	PlasID2	PlasQ_T_Len2	PlasContig2	PlasContig2Pos	PlasAccNo2	PlasDB3	Plas3	PlasID3	PlasQ_T_Len3	PlasContig3	PlasContig3Pos	PlasAccNo3	PlasDB4	Plas4	PlasID4	PlasQ_T_Len4	PlasContig4	PlasContig4Pos	PlasAccNo4	PlasDB5	Plas5	PlasID5	PlasQ_T_Len5	PlasContig5	PlasContig5Pos	PlasAccNo5	PlasDB6	Plas6	PlasID6	PlasQ_T_Len6	PlasContig6	PlasContig6Pos	PlasAccNo6	PlasDB7	Plas7	PlasID7	PlasQ_T_Len7	PlasContig7	PlasContig7Pos	PlasDB8	Plas8	PlasID8	PlasQ_T_Len8	PlasContig8	PlasContig8Pos	PlasDB9	Plas9	PlasID9	PlasQ_T_Len9	PlasContig9	PlasContig9Pos	avrAlocus1	avrAcontig1	avrAcontig1Pos	avrAident1	avrALlen1	avrAeval1	avrAlocus2	avrAcontig2	avrAcontig2Pos	avrAident2	avrALlen2	avrAeval2
GCA_032253035.1_PDT001908506.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNEKY010000001.1 Salmonella enterica strain PNUSAS387340 SAMN37588911-rid19558523.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABNEKY010000025.1 Salmonella enterica strain PNUSAS387340 SAMN37588911-rid19558523.guided.19, whole genome shotgun sequence	3534..3971	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNEKY010000026.1 Salmonella enterica strain PNUSAS387340 SAMN37588911-rid19558523.guided.20, whole genome shotgun sequence	3534..3971	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNEKY010000012.1 Salmonella enterica strain PNUSAS387340 SAMN37588911-rid19558523.denovo.12, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	ABNEKY010000016.1 Salmonella enterica strain PNUSAS387340 SAMN37588911-rid19558523.denovo.18, whole genome shotgun sequence	3423..3684																																																avrA	ABNEKY010000002.1	553636..554505	99.54	870	0						
GCA_032253235.1_PDT001908367.1_genomic.fna	Salmonella_enterica	0.5195	376.775 KB	5	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNELF010000001.1 Salmonella enterica strain PNUSAS387271 SAMN37587549-rid19556943.denovo.01, whole genome shotgun sequence	110416..110853	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNELF010000038.1 Salmonella enterica strain PNUSAS387271 SAMN37587549-rid19556943.guided.25, whole genome shotgun sequence	654..1091	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNELF010000026.1 Salmonella enterica strain PNUSAS387271 SAMN37587549-rid19556943.denovo.29, whole genome shotgun sequence	1480..1610	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNELF010000027.1 Salmonella enterica strain PNUSAS387271 SAMN37587549-rid19556943.denovo.30, whole genome shotgun sequence	2207..2337																																																avrA	ABNELF010000003.1	143391..144260	98.966	870	0						
GCA_032253255.1_PDT001908286.1_genomic.fna	Salmonella_enterica	0.5207	354.428 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNELH010000002.1 Salmonella enterica strain PNUSAS387160 SAMN37587403-rid19556333.denovo.02, whole genome shotgun sequence	270690..271127	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNELH010000036.1 Salmonella enterica strain PNUSAS387160 SAMN37587403-rid19556333.guided.27, whole genome shotgun sequence	5767..6204	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABNELH010000023.1 Salmonella enterica strain PNUSAS387160 SAMN37587403-rid19556333.denovo.24, whole genome shotgun sequence	12413..12674																																																																	
GCA_032253265.1_PDT001908253.1_genomic.fna	Salmonella_enterica	0.5205	473.819 KB	4	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI2(Delta),IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNELI010000001.1 Salmonella enterica strain PNUSAS387155 SAMN37587446-rid19556063.denovo.01, whole genome shotgun sequence	750479..750916	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNELI010000028.1 Salmonella enterica strain PNUSAS387155 SAMN37587446-rid19556063.guided.20, whole genome shotgun sequence	3041..3478	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	98.1	316 / 316	ABNELI010000014.1 Salmonella enterica strain PNUSAS387155 SAMN37587446-rid19556063.denovo.14, whole genome shotgun sequence	10650..10965	enterobacteriales	IncX1	98.93	374 / 374	ABNELI010000015.1 Salmonella enterica strain PNUSAS387155 SAMN37587446-rid19556063.denovo.16, whole genome shotgun sequence	32399..32772																																																avrA	ABNELI010000002.1	589684..590552	99.425	870	0						
GCA_032253295.1_PDT001908312.1_genomic.fna	Salmonella_enterica	0.5193	172.876 KB	12	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNELG010000005.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325266 SAMN37587545-rid19556543.denovo.05, whole genome shotgun sequence	73281..73718	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNELG010000029.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325266 SAMN37587545-rid19556543.denovo.29, whole genome shotgun sequence	58543..59379	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNELG010000029.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325266 SAMN37587545-rid19556543.denovo.29, whole genome shotgun sequence	59379..60182	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNELG010000068.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325266 SAMN37587545-rid19556543.guided.41, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNELG010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325266 SAMN37587545-rid19556543.guided.50, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNELG010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325266 SAMN37587545-rid19556543.guided.50, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNELG010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325266 SAMN37587545-rid19556543.denovo.51, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNELG010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325266 SAMN37587545-rid19556543.guided.49, whole genome shotgun sequence	4114..5319	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNELG010000029.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325266 SAMN37587545-rid19556543.denovo.29, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNELG010000029.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325266 SAMN37587545-rid19556543.denovo.29, whole genome shotgun sequence	57659..57920		enterobacteriales	IncFII	96.95	262 / 261	ABNELG010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325266 SAMN37587545-rid19556543.guided.50, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABNELG010000044.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325266 SAMN37587545-rid19556543.denovo.47, whole genome shotgun sequence	2153..2525																																		avrA	ABNELG010000004.1	39484..40353	99.655	870	0						
GCA_032253315.1_PDT001908234.1_genomic.fna	Salmonella_enterica	0.5224	761.796 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNELL010000001.1 Salmonella enterica strain PNUSAS387169 SAMN37587401-rid19555873.denovo.01, whole genome shotgun sequence	473677..474114	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNELL010000019.1 Salmonella enterica strain PNUSAS387169 SAMN37587401-rid19555873.guided.15, whole genome shotgun sequence	12937..13374	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNELL010000006.1	151330..152199	99.77	870	0						
GCA_032253375.1_PDT001809170.1_genomic.fna	Salmonella_enterica	0.5214	395.213 KB	4	aroC_42,dnaN_46*,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94*	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_42	dnaN	99.8003992015968	100	dnaN_46*	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNELM010000001.1 Salmonella enterica strain PNUSAS360910 SAMN36294224-rid18713703.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNELM010000032.1 Salmonella enterica strain PNUSAS360910 SAMN36294224-rid18713703.guided.22, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNELM010000017.1 Salmonella enterica strain PNUSAS360910 SAMN36294224-rid18713703.denovo.17, whole genome shotgun sequence	7431..7964																																																						avrA	ABNELM010000003.1	453762..454631	99.31	870	0						
GCA_032253415.1_PDT001809131.1_genomic.fna	Salmonella_enterica	0.5236	49.62 KB	31	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNELO010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.denovo.061, whole genome shotgun sequence	11359..11796	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNELO010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.denovo.078, whole genome shotgun sequence	18298..19089	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNELO010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.denovo.078, whole genome shotgun sequence	18298..19089	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNELO010000139.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.denovo.144, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNELO010000139.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.denovo.144, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNELO010000222.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.guided.097, whole genome shotgun sequence	15469..15906	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNELO010000223.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.guided.100, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNELO010000223.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.guided.100, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNELO010000226.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.guided.142, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNELO010000226.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.guided.142, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNELO010000189.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.denovo.197, whole genome shotgun sequence	234..1109	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNELO010000229.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.guided.194, whole genome shotgun sequence	265..1140	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNELO010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.denovo.078, whole genome shotgun sequence	16954..17793	Sulfamethoxazole	U12338	sul1	100	840/840	ABNELO010000223.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.guided.100, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNELO010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.denovo.078, whole genome shotgun sequence	3238..4437	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNELO010000227.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.guided.150, whole genome shotgun sequence	908..2107	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNELO010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.denovo.162, whole genome shotgun sequence	50..523	Trimethoprim	AF393510	dfrA14	100	474/474	ABNELO010000228.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.guided.175, whole genome shotgun sequence	91..564	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNELO010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313418 SAMN36293140-rid18713013.denovo.145, whole genome shotgun sequence	2135..2694																																																						avrA	ABNELO010000014.1	83942..84811	99.655	870	0						
GCA_032253475.1_PDT001808134.1_genomic.fna	Salmonella_enterica	0.5207	225.939 KB	6	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	-	Salmonella enterica subspecies enterica (subspecies I)	I 3,10:l,v:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNELS010000001.1 Salmonella enterica strain PNUSAS360822 SAMN36276549-rid18711973.denovo.01, whole genome shotgun sequence	648170..648607	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNELS010000097.1 Salmonella enterica strain PNUSAS360822 SAMN36276549-rid18711973.guided.33, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNELS010000005.1	92215..93084	98.966	870	0						
GCA_032253495.1_PDT001808115.1_genomic.fna	Salmonella_enterica	0.5213	375.775 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNELT010000001.1 Salmonella enterica strain PNUSAS360806 SAMN36276536-rid18711803.denovo.01, whole genome shotgun sequence	651894..652331	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNELT010000031.1 Salmonella enterica strain PNUSAS360806 SAMN36276536-rid18711803.guided.19, whole genome shotgun sequence	20708..21145	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNELT010000021.1 Salmonella enterica strain PNUSAS360806 SAMN36276536-rid18711803.denovo.23, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNELT010000023.1 Salmonella enterica strain PNUSAS360806 SAMN36276536-rid18711803.denovo.25, whole genome shotgun sequence	3389..3650																																																avrA	ABNELT010000002.1	553648..554517	99.54	870	0						
GCA_032253515.1_PDT001808182.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNELR010000001.1 Salmonella enterica strain PNUSAS360849 SAMN36276785-rid18712423.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNELR010000025.1 Salmonella enterica strain PNUSAS360849 SAMN36276785-rid18712423.guided.18, whole genome shotgun sequence	2251..2688	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNELR010000013.1 Salmonella enterica strain PNUSAS360849 SAMN36276785-rid18712423.denovo.14, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNELR010000016.1 Salmonella enterica strain PNUSAS360849 SAMN36276785-rid18712423.denovo.17, whole genome shotgun sequence	3392..3653																																																avrA	ABNELR010000002.1	553636..554505	99.54	870	0						
GCA_032253535.1_PDT001808017.1_genomic.fna	Salmonella_enterica	0.521	707.34 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNELW010000001.1 Salmonella enterica strain PNUSAS360688 SAMN36275167-rid18710883.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNELW010000018.1 Salmonella enterica strain PNUSAS360688 SAMN36275167-rid18710883.guided.10, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032253555.1_PDT001808039.1_genomic.fna	Salmonella_enterica	0.5211	382.596 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNELV010000002.1 Salmonella enterica strain PNUSAS360744 SAMN36275353-rid18711043.denovo.02, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNELV010000035.1 Salmonella enterica strain PNUSAS360744 SAMN36275353-rid18711043.guided.27, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNELV010000001.1	452676..453544	100	869	0						
GCA_032253675.1_PDT001807885.1_genomic.fna	Salmonella_enterica	0.5208	362.946 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNELX010000001.1 Salmonella enterica strain PNUSAS360589 SAMN36274877-rid18709853.denovo.01, whole genome shotgun sequence	754308..754745	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNELX010000045.1 Salmonella enterica strain PNUSAS360589 SAMN36274877-rid18709853.guided.27, whole genome shotgun sequence	2688..3125	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFII(S)	97.71	262 / 262	ABNELX010000015.1 Salmonella enterica strain PNUSAS360589 SAMN36274877-rid18709853.denovo.16, whole genome shotgun sequence	63399..63658	enterobacteriales	IncX1	98.66	374 / 374	ABNELX010000015.1 Salmonella enterica strain PNUSAS360589 SAMN36274877-rid18709853.denovo.16, whole genome shotgun sequence	24683..25056																																																avrA	ABNELX010000006.1	173523..174391	99.655	870	0						
GCA_032253695.1_PDT001807837.1_genomic.fna	Salmonella_enterica	0.5215	445.3 KB	5	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNELZ010000007.1 Salmonella enterica strain PNUSAS360586 SAMN36274896-rid18709563.denovo.07, whole genome shotgun sequence	176878..177315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNELZ010000034.1 Salmonella enterica strain PNUSAS360586 SAMN36274896-rid18709563.guided.22, whole genome shotgun sequence	7515..7952	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNELZ010000001.1	505604..506473	99.77	870	0						
GCA_032253715.1_PDT001807789.1_genomic.fna	Salmonella_enterica	0.5214	278.518 KB	7	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNEMA010000001.1 Salmonella enterica strain PNUSAS360621 SAMN36275042-rid18708423.denovo.01, whole genome shotgun sequence	133779..134216	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNEMA010000043.1 Salmonella enterica strain PNUSAS360621 SAMN36275042-rid18708423.guided.27, whole genome shotgun sequence	8109..8546	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNEMA010000032.1 Salmonella enterica strain PNUSAS360621 SAMN36275042-rid18708423.denovo.35, whole genome shotgun sequence	1604..1734																																																																	
GCA_032253755.1_PDT001807743.1_genomic.fna	Salmonella_enterica	0.5211	312.415 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNEMC010000002.1 Salmonella enterica strain PNUSAS360371 SAMN36274770-rid18708123.denovo.02, whole genome shotgun sequence	494589..495026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNEMC010000036.1 Salmonella enterica strain PNUSAS360371 SAMN36274770-rid18708123.guided.22, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNEMC010000001.1	144854..145723	99.31	870	0						
GCA_032253795.1_PDT001807724.1_genomic.fna	Salmonella_enterica	0.5208	302.33 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNEMD010000001.1 Salmonella enterica strain PNUSAS360372 SAMN36274768-rid18707363.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNEMD010000036.1 Salmonella enterica strain PNUSAS360372 SAMN36274768-rid18707363.guided.27, whole genome shotgun sequence	8847..9284	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNEMD010000020.1 Salmonella enterica strain PNUSAS360372 SAMN36274768-rid18707363.denovo.20, whole genome shotgun sequence	7558..8091																																																						avrA	ABNEMD010000013.1	93876..94746	99.196	871	0						
GCA_032253815.1_PDT001807672.1_genomic.fna	Salmonella_enterica	0.5226	684.717 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pMET)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNEMF010000001.1 Salmonella enterica strain PNUSAS360482 SAMN36274490-rid18707123.denovo.01, whole genome shotgun sequence	790670..791107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNEMF010000029.1 Salmonella enterica strain PNUSAS360482 SAMN36274490-rid18707123.guided.23, whole genome shotgun sequence	767..1204	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pMET)	98.27	577 / 577	ABNEMF010000017.1 Salmonella enterica strain PNUSAS360482 SAMN36274490-rid18707123.denovo.17, whole genome shotgun sequence	28348..28924																																																						avrA	ABNEMF010000003.1	543741..544610	99.54	870	0						
GCA_032253855.1_PDT001807653.1_genomic.fna	Salmonella_enterica	0.5214	377.051 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNEMG010000004.1 Salmonella enterica strain PNUSAS360422 SAMN36274473-rid18707563.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNEMG010000056.1 Salmonella enterica strain PNUSAS360422 SAMN36274473-rid18707563.guided.22, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNEMG010000035.1 Salmonella enterica strain PNUSAS360422 SAMN36274473-rid18707563.denovo.38, whole genome shotgun sequence	1251..1381	enterobacteriales	IncFIB(S)	100	643 / 643	ABNEMG010000015.1 Salmonella enterica strain PNUSAS360422 SAMN36274473-rid18707563.denovo.15, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	ABNEMG010000015.1 Salmonella enterica strain PNUSAS360422 SAMN36274473-rid18707563.denovo.15, whole genome shotgun sequence	30407..30668																																									avrA	ABNEMG010000001.1	446529..447397	100	869	0						
GCA_032253895.1_PDT001807586.1_genomic.fna	Salmonella_enterica	0.523	367.997 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNEMI010000001.1 Salmonella enterica strain PNUSAS360384 SAMN36274244-rid18706153.denovo.01, whole genome shotgun sequence	573968..574405	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNEMI010000033.1 Salmonella enterica strain PNUSAS360384 SAMN36274244-rid18706153.guided.22, whole genome shotgun sequence	7252..7689	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	95.65	138 / 142	ABNEMI010000015.1 Salmonella enterica strain PNUSAS360384 SAMN36274244-rid18706153.denovo.15, whole genome shotgun sequence	70609..70744																																																						avrA	ABNEMI010000002.1	149828..150697	99.655	870	0						
GCA_032257365.1_PDT001909948.1_genomic.fna	Salmonella_enterica	0.5213	285.976 KB	7	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_58,thrA_4	412	4:e,h:1,5	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1C,blaTEM-1C	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col440II,Col440II,ColpVC,ColpVC	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_58	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNEQS010000007.1 Salmonella enterica strain FDA1214888-C001-001 SAMN37599301-rid19566193.denovo.07, whole genome shotgun sequence	153132..153569	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNEQS010000037.1 Salmonella enterica strain FDA1214888-C001-001 SAMN37599301-rid19566193.guided.24, whole genome shotgun sequence	4130..4567	Amikacin, Tobramycin	NC_003197	blaTEM-1C	100	861/861	ABNEQS010000025.1 Salmonella enterica strain FDA1214888-C001-001 SAMN37599301-rid19566193.denovo.29, whole genome shotgun sequence	5036..5896	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1C	100	861/861	ABNEQS010000039.1 Salmonella enterica strain FDA1214888-C001-001 SAMN37599301-rid19566193.guided.28, whole genome shotgun sequence	1..861	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNEQS010000025.1 Salmonella enterica strain FDA1214888-C001-001 SAMN37599301-rid19566193.denovo.29, whole genome shotgun sequence	1939..2067	enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNEQS010000039.1 Salmonella enterica strain FDA1214888-C001-001 SAMN37599301-rid19566193.guided.28, whole genome shotgun sequence	3830..3958		enterobacteriales	Col440II	98.23	282 / 282	ABNEQS010000025.1 Salmonella enterica strain FDA1214888-C001-001 SAMN37599301-rid19566193.denovo.29, whole genome shotgun sequence	2645..2926		enterobacteriales	Col440II	98.23	282 / 282	ABNEQS010000039.1 Salmonella enterica strain FDA1214888-C001-001 SAMN37599301-rid19566193.guided.28, whole genome shotgun sequence	2971..3252		enterobacteriales	ColpVC	96.89	193 / 193	ABNEQS010000028.1 Salmonella enterica strain FDA1214888-C001-001 SAMN37599301-rid19566193.denovo.32, whole genome shotgun sequence	1524..1716		enterobacteriales	ColpVC	98.96	193 / 193	ABNEQS010000029.1 Salmonella enterica strain FDA1214888-C001-001 SAMN37599301-rid19566193.denovo.33, whole genome shotgun sequence	805..997																				avrA	ABNEQS010000009.1	94142..95011	99.54	870	0						
GCA_032257385.1_PDT001909947.1_genomic.fna	Salmonella_enterica	0.5217	379.659 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_58,thrA_4	412	4:e,h:1,5	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1C,blaTEM-1C	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col440II,Col440II,ColpVC,ColpVC	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_58	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNEQU010000001.1 Salmonella enterica strain FDA1214888-C001-005 SAMN37599302-rid19566183.denovo.01, whole genome shotgun sequence	625131..625568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNEQU010000032.1 Salmonella enterica strain FDA1214888-C001-005 SAMN37599302-rid19566183.guided.21, whole genome shotgun sequence	425..862	Amikacin, Tobramycin	NC_003197	blaTEM-1C	100	861/861	ABNEQU010000019.1 Salmonella enterica strain FDA1214888-C001-005 SAMN37599302-rid19566183.denovo.23, whole genome shotgun sequence	5036..5896	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1C	100	861/861	ABNEQU010000033.1 Salmonella enterica strain FDA1214888-C001-005 SAMN37599302-rid19566183.guided.22, whole genome shotgun sequence	1..861	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNEQU010000019.1 Salmonella enterica strain FDA1214888-C001-005 SAMN37599302-rid19566183.denovo.23, whole genome shotgun sequence	1939..2067	enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNEQU010000033.1 Salmonella enterica strain FDA1214888-C001-005 SAMN37599302-rid19566183.guided.22, whole genome shotgun sequence	3830..3958		enterobacteriales	Col440II	98.23	282 / 282	ABNEQU010000019.1 Salmonella enterica strain FDA1214888-C001-005 SAMN37599302-rid19566183.denovo.23, whole genome shotgun sequence	2645..2926		enterobacteriales	Col440II	98.23	282 / 282	ABNEQU010000033.1 Salmonella enterica strain FDA1214888-C001-005 SAMN37599302-rid19566183.guided.22, whole genome shotgun sequence	2971..3252		enterobacteriales	ColpVC	96.89	193 / 193	ABNEQU010000023.1 Salmonella enterica strain FDA1214888-C001-005 SAMN37599302-rid19566183.denovo.27, whole genome shotgun sequence	1524..1716		enterobacteriales	ColpVC	98.96	193 / 193	ABNEQU010000024.1 Salmonella enterica strain FDA1214888-C001-005 SAMN37599302-rid19566183.denovo.28, whole genome shotgun sequence	805..997																				avrA	ABNEQU010000006.1	151242..152111	99.54	870	0						
GCA_032259805.1_PDT001909813.1_genomic.fna	Salmonella_enterica	0.5217	49.031 KB	30	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNERN010000018.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314370 SAMN37609104-rid19564833.denovo.018, whole genome shotgun sequence	12358..12795	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNERN010000236.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314370 SAMN37609104-rid19564833.guided.103, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	100	373 / 373	ABNERN010000155.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314370 SAMN37609104-rid19564833.denovo.158, whole genome shotgun sequence	2694..3066																																																						avrA	ABNERN010000035.1	39618..40487	99.655	870	0						
GCA_032259865.1_PDT001909811.1_genomic.fna	Salmonella_enterica	0.5235	59.224 KB	24	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNERP010000019.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314375 SAMN37609110-rid19564813.denovo.019, whole genome shotgun sequence	12556..12993	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNERP010000136.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314375 SAMN37609110-rid19564813.guided.083, whole genome shotgun sequence	6830..7267	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNERP010000016.1	61404..62273	99.655	870	0						
GCA_032259885.1_PDT001909812.1_genomic.fna	Salmonella_enterica	0.5216	45.204 KB	33	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNERO010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314380 SAMN37609120-rid19564823.denovo.057, whole genome shotgun sequence	12511..12948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNERO010000240.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314380 SAMN37609120-rid19564823.guided.135, whole genome shotgun sequence	4783..5220	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	100	373 / 373	ABNERO010000177.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314380 SAMN37609120-rid19564823.denovo.180, whole genome shotgun sequence	2153..2525																																																						avrA	ABNERO010000037.1	39484..40353	99.655	870	0						
GCA_032259905.1_PDT001909810.1_genomic.fna	Salmonella_enterica	0.5227	54.732 KB	28	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNERQ010000021.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314367 SAMN37609101-rid19565643.denovo.021, whole genome shotgun sequence	12523..12960	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNERQ010000136.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314367 SAMN37609101-rid19565643.denovo.142, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNERQ010000136.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314367 SAMN37609101-rid19565643.denovo.142, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNERQ010000175.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314367 SAMN37609101-rid19565643.guided.048, whole genome shotgun sequence	21134..21571	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNERQ010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314367 SAMN37609101-rid19565643.guided.141, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNERQ010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314367 SAMN37609101-rid19565643.guided.141, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNERQ010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314367 SAMN37609101-rid19565643.denovo.134, whole genome shotgun sequence	2822..4035	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNERQ010000179.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314367 SAMN37609101-rid19565643.guided.138, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	tet(A)	100	1200/1200	ABNERQ010000122.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314367 SAMN37609101-rid19565643.denovo.126, whole genome shotgun sequence	2526..3725	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNERQ010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314367 SAMN37609101-rid19565643.guided.125, whole genome shotgun sequence	2567..3766	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNERQ010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314367 SAMN37609101-rid19565643.denovo.119, whole genome shotgun sequence	5548..6107																																																						avrA	ABNERQ010000013.1	81424..82293	99.655	870	0						
GCA_032259925.1_PDT001909808.1_genomic.fna	Salmonella_enterica	0.5222	51.604 KB	30	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	3	aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aph(3'')-Ib	100	803/804	ABNERS010000071.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314372 SAMN37609107-rid19564793.denovo.071, whole genome shotgun sequence	6189..6991	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNERS010000071.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314372 SAMN37609107-rid19564793.denovo.071, whole genome shotgun sequence	6189..6992	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNERS010000071.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314372 SAMN37609107-rid19564793.denovo.071, whole genome shotgun sequence	6189..6992	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNERS010000071.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314372 SAMN37609107-rid19564793.denovo.071, whole genome shotgun sequence	6189..6992	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNERS010000071.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314372 SAMN37609107-rid19564793.denovo.071, whole genome shotgun sequence	5449..6189	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNERS010000071.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314372 SAMN37609107-rid19564793.denovo.071, whole genome shotgun sequence	5449..6189	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABNERS010000095.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314372 SAMN37609107-rid19564793.denovo.095, whole genome shotgun sequence	12508..12945	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNERS010000212.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314372 SAMN37609107-rid19564793.guided.119, whole genome shotgun sequence	2617..3419	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNERS010000212.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314372 SAMN37609107-rid19564793.guided.119, whole genome shotgun sequence	2616..3419	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNERS010000212.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314372 SAMN37609107-rid19564793.guided.119, whole genome shotgun sequence	2616..3419	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNERS010000212.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314372 SAMN37609107-rid19564793.guided.119, whole genome shotgun sequence	2616..3419	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNERS010000212.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314372 SAMN37609107-rid19564793.guided.119, whole genome shotgun sequence	3419..4159	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNERS010000212.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314372 SAMN37609107-rid19564793.guided.119, whole genome shotgun sequence	3419..4159	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABNERS010000215.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314372 SAMN37609107-rid19564793.guided.142, whole genome shotgun sequence	3587..4024	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNERS010000143.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314372 SAMN37609107-rid19564793.denovo.147, whole genome shotgun sequence	1943..2624	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABNERS010000088.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314372 SAMN37609107-rid19564793.denovo.088, whole genome shotgun sequence	5121..5617																																																avrA	ABNERS010000019.1	61533..62402	98.966	870	0						
GCA_032259945.1_PDT001909809.1_genomic.fna	Salmonella_enterica	0.5226	57.125 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aadA1,aadA1,aac(6')-Iaa,aph(3')-Ia,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNERR010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.denovo.063, whole genome shotgun sequence	12490..12927	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNERR010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.denovo.077, whole genome shotgun sequence	18442..19233	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNERR010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.denovo.077, whole genome shotgun sequence	18442..19233	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNERR010000147.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.denovo.154, whole genome shotgun sequence	93..908	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aadA1	99.75	792/792	ABNERR010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.guided.075, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNERR010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.guided.075, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNERR010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.guided.103, whole genome shotgun sequence	7422..7859	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNERR010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.guided.150, whole genome shotgun sequence	127..942	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	floR	98.19	1214/1215	ABNERR010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.denovo.117, whole genome shotgun sequence	3189..4402	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNERR010000168.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.guided.120, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNERR010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.denovo.077, whole genome shotgun sequence	17098..17937	Sulfamethoxazole	U12338	sul1	100	840/840	ABNERR010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.guided.075, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNERR010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.denovo.077, whole genome shotgun sequence	3382..4581	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNERR010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.guided.075, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNERR010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.denovo.114, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNERR010000169.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.guided.135, whole genome shotgun sequence	84..557	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNERR010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314383 SAMN37609123-rid19564803.denovo.088, whole genome shotgun sequence	14638..15197																																																						avrA	ABNERR010000005.1	81414..82283	99.655	870	0						
GCA_032259965.1_PDT001909709.1_genomic.fna	Salmonella_enterica	0.5231	70.091 KB	19	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	-:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:l,v:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNERT010000055.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS22314381 SAMN37609121-rid19564423.denovo.055, whole genome shotgun sequence	15324..15761	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNERT010000127.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS22314381 SAMN37609121-rid19564423.guided.059, whole genome shotgun sequence	15269..15706	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNERT010000095.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS22314381 SAMN37609121-rid19564423.denovo.098, whole genome shotgun sequence	358..488																																																																	
GCA_032259985.1_PDT001909708.1_genomic.fna	Salmonella_enterica	0.5221	79.668 KB	20	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNERU010000052.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22314365 SAMN37609099-rid19564413.denovo.052, whole genome shotgun sequence	13064..13501	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNERU010000110.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22314365 SAMN37609099-rid19564413.guided.065, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNERU010000087.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22314365 SAMN37609099-rid19564413.denovo.090, whole genome shotgun sequence	239..369	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNERU010000093.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22314365 SAMN37609099-rid19564413.denovo.096, whole genome shotgun sequence	268..409																																																avrA	ABNERU010000039.1	43553..44422	99.425	870	0						
GCA_032260005.1_PDT001909707.1_genomic.fna	Salmonella_enterica	0.5193	88.207 KB	20	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNERV010000015.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314378 SAMN37609118-rid19564403.denovo.015, whole genome shotgun sequence	85827..86264	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNERV010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314378 SAMN37609118-rid19564403.denovo.058, whole genome shotgun sequence	2754..3590	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNERV010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314378 SAMN37609118-rid19564403.denovo.058, whole genome shotgun sequence	1952..2754	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNERV010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314378 SAMN37609118-rid19564403.denovo.058, whole genome shotgun sequence	1951..2754	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNERV010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314378 SAMN37609118-rid19564403.denovo.058, whole genome shotgun sequence	1951..2754	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNERV010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314378 SAMN37609118-rid19564403.denovo.058, whole genome shotgun sequence	1951..2754	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNERV010000162.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314378 SAMN37609118-rid19564403.guided.085, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNERV010000163.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314378 SAMN37609118-rid19564403.guided.090, whole genome shotgun sequence	2795..3631	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNERV010000163.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314378 SAMN37609118-rid19564403.guided.090, whole genome shotgun sequence	1993..2795	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNERV010000163.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314378 SAMN37609118-rid19564403.guided.090, whole genome shotgun sequence	1992..2795	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNERV010000163.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314378 SAMN37609118-rid19564403.guided.090, whole genome shotgun sequence	1992..2795	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNERV010000163.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314378 SAMN37609118-rid19564403.guided.090, whole genome shotgun sequence	1992..2795	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNERV010000068.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314378 SAMN37609118-rid19564403.denovo.069, whole genome shotgun sequence	12764..13090	enterobacteriales	IncHI2A	99.37	630 / 630	ABNERV010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314378 SAMN37609118-rid19564403.denovo.075, whole genome shotgun sequence	12802..13431		enterobacteriales	IncX1	100	373 / 373	ABNERV010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314378 SAMN37609118-rid19564403.denovo.066, whole genome shotgun sequence	2153..2525																																									avrA	ABNERV010000039.1	39484..40353	99.655	870	0						
GCA_032260025.1_PDT001909705.1_genomic.fna	Salmonella_enterica	0.523	55.938 KB	27	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNERW010000002.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.denovo.002, whole genome shotgun sequence	12539..12976	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNERW010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.denovo.064, whole genome shotgun sequence	22648..23439	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNERW010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.denovo.064, whole genome shotgun sequence	22648..23439	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNERW010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.denovo.131, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNERW010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.denovo.131, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNERW010000174.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.guided.094, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNERW010000177.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.guided.115, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNERW010000177.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.guided.115, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNERW010000179.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.guided.130, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNERW010000179.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.guided.130, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNERW010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.denovo.134, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNERW010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.guided.133, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNERW010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.denovo.122, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNERW010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.guided.127, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNERW010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.denovo.064, whole genome shotgun sequence	21304..22143	Sulfamethoxazole	U12338	sul1	100	840/840	ABNERW010000177.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.guided.115, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNERW010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.denovo.064, whole genome shotgun sequence	7588..8787	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNERW010000175.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.guided.106, whole genome shotgun sequence	6523..7722	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNERW010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314384 SAMN37609124-rid19564783.denovo.116, whole genome shotgun sequence	5576..6135																																																						avrA	ABNERW010000038.1	39528..40397	99.655	870	0						
GCA_032260045.1_PDT001909706.1_genomic.fna	Salmonella_enterica	0.5216	50.237 KB	30	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	-:f,g:-	5	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	-	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNERX010000016.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22314376 SAMN37609111-rid19564393.denovo.016, whole genome shotgun sequence	62369..62806	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNERX010000063.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22314376 SAMN37609111-rid19564393.denovo.064, whole genome shotgun sequence	22105..22884	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABNERX010000195.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22314376 SAMN37609111-rid19564393.guided.063, whole genome shotgun sequence	22131..22910	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	98.17	438/438	ABNERX010000198.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22314376 SAMN37609111-rid19564393.guided.095, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNERX010000031.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22314376 SAMN37609111-rid19564393.denovo.031, whole genome shotgun sequence	37275..37697	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNERX010000197.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22314376 SAMN37609111-rid19564393.guided.089, whole genome shotgun sequence	17068..17490	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNERX010000063.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22314376 SAMN37609111-rid19564393.denovo.064, whole genome shotgun sequence	23389..24228	Sulfamethoxazole	U12338	sul1	100	840/840	ABNERX010000195.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22314376 SAMN37609111-rid19564393.guided.063, whole genome shotgun sequence	23415..24254	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNERX010000116.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22314376 SAMN37609111-rid19564393.denovo.122, whole genome shotgun sequence	6632..7831	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNERX010000200.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22314376 SAMN37609111-rid19564393.guided.120, whole genome shotgun sequence	6673..7872	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNERX010000134.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22314376 SAMN37609111-rid19564393.denovo.140, whole genome shotgun sequence	186..316	enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNERX010000118.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22314376 SAMN37609111-rid19564393.denovo.124, whole genome shotgun sequence	4566..4707																																																avrA	ABNERX010000013.1	81530..82399	99.655	870	0						
GCA_032260065.1_PDT001909704.1_genomic.fna	Salmonella_enterica	0.5226	66.445 KB	22	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:f,g:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	f,g	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNERZ010000053.1 Salmonella enterica subsp. enterica strain FSIS22314364 SAMN37609105-rid19564383.denovo.053, whole genome shotgun sequence	12373..12810	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNERZ010000139.1 Salmonella enterica subsp. enterica strain FSIS22314364 SAMN37609105-rid19564383.guided.056, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNERZ010000107.1 Salmonella enterica subsp. enterica strain FSIS22314364 SAMN37609105-rid19564383.denovo.110, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABNERZ010000103.1 Salmonella enterica subsp. enterica strain FSIS22314364 SAMN37609105-rid19564383.denovo.105, whole genome shotgun sequence	3175..3285																																																avrA	ABNERZ010000018.1	61533..62402	99.425	870	0						
GCA_032260085.1_PDT001909703.1_genomic.fna	Salmonella_enterica	0.5228	69.127 KB	21	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	-:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	-	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNERY010000002.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314373 SAMN37609108-rid19564373.denovo.002, whole genome shotgun sequence	17236..17673	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNERY010000145.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314373 SAMN37609108-rid19564373.guided.072, whole genome shotgun sequence	15470..15907	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNERY010000092.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314373 SAMN37609108-rid19564373.denovo.094, whole genome shotgun sequence	6831..7473																																																						avrA	ABNERY010000006.1	61534..62403	99.54	870	0						
GCA_032260105.1_PDT001909702.1_genomic.fna	Salmonella_enterica	0.5233	55.847 KB	29	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNESA010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314368 SAMN37609102-rid19564363.denovo.056, whole genome shotgun sequence	12469..12906	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNESA010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314368 SAMN37609102-rid19564363.denovo.098, whole genome shotgun sequence	11992..12783	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNESA010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314368 SAMN37609102-rid19564363.denovo.098, whole genome shotgun sequence	11992..12783	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNESA010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314368 SAMN37609102-rid19564363.guided.074, whole genome shotgun sequence	7078..7515	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNESA010000181.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314368 SAMN37609102-rid19564363.guided.099, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNESA010000181.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314368 SAMN37609102-rid19564363.guided.099, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNESA010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314368 SAMN37609102-rid19564363.denovo.098, whole genome shotgun sequence	10648..11487	Sulfamethoxazole	U12338	sul1	100	840/840	ABNESA010000181.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314368 SAMN37609102-rid19564363.guided.099, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNESA010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314368 SAMN37609102-rid19564363.denovo.125, whole genome shotgun sequence	1819..3018	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNESA010000182.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314368 SAMN37609102-rid19564363.guided.124, whole genome shotgun sequence	1848..3047	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNESA010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314368 SAMN37609102-rid19564363.denovo.117, whole genome shotgun sequence	5426..5985																																																						avrA	ABNESA010000008.1	105080..105949	99.655	870	0						
GCA_032260125.1_PDT001909700.1_genomic.fna	Salmonella_enterica	0.5226	61.63 KB	24	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNESC010000002.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314382 SAMN37609122-rid19564773.denovo.002, whole genome shotgun sequence	11321..11758	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNESC010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314382 SAMN37609122-rid19564773.denovo.046, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNESC010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314382 SAMN37609122-rid19564773.denovo.046, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNESC010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314382 SAMN37609122-rid19564773.denovo.112, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNESC010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314382 SAMN37609122-rid19564773.denovo.112, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNESC010000148.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314382 SAMN37609122-rid19564773.guided.037, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNESC010000149.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314382 SAMN37609122-rid19564773.guided.069, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNESC010000149.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314382 SAMN37609122-rid19564773.guided.069, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNESC010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314382 SAMN37609122-rid19564773.guided.111, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNESC010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314382 SAMN37609122-rid19564773.guided.111, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNESC010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314382 SAMN37609122-rid19564773.denovo.046, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNESC010000149.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314382 SAMN37609122-rid19564773.guided.069, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNESC010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314382 SAMN37609122-rid19564773.denovo.046, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNESC010000149.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314382 SAMN37609122-rid19564773.guided.069, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNESC010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314382 SAMN37609122-rid19564773.denovo.091, whole genome shotgun sequence	14638..15197																																																						avrA	ABNESC010000017.1	81424..82293	99.655	870	0						
GCA_032260165.1_PDT001909698.1_genomic.fna	Salmonella_enterica	0.5236	44.804 KB	30	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNESD010000058.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22314374 SAMN37609109-rid19564763.denovo.058, whole genome shotgun sequence	12474..12911	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNESD010000176.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22314374 SAMN37609109-rid19564763.guided.124, whole genome shotgun sequence	6598..7035	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNESD010000120.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22314374 SAMN37609109-rid19564763.denovo.123, whole genome shotgun sequence	3374..3515																																																																	
GCA_032260185.1_PDT001909699.1_genomic.fna	Salmonella_enterica	0.5222	47.417 KB	30	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),ColpVC,IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNESE010000045.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314379 SAMN37609119-rid19564343.denovo.046, whole genome shotgun sequence	17425..17862	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNESE010000205.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314379 SAMN37609119-rid19564343.guided.137, whole genome shotgun sequence	3955..4392	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNESE010000020.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314379 SAMN37609119-rid19564343.denovo.020, whole genome shotgun sequence	13714..14529	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNESE010000201.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314379 SAMN37609119-rid19564343.guided.028, whole genome shotgun sequence	47719..48534	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNESE010000020.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314379 SAMN37609119-rid19564343.denovo.020, whole genome shotgun sequence	10338..11537	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNESE010000204.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314379 SAMN37609119-rid19564343.guided.115, whole genome shotgun sequence	1052..2251	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNESE010000145.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314379 SAMN37609119-rid19564343.denovo.150, whole genome shotgun sequence	371..501	enterobacteriales	ColpVC	98.96	193 / 193	ABNESE010000169.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314379 SAMN37609119-rid19564343.denovo.174, whole genome shotgun sequence	805..997		enterobacteriales	IncX1	98.38	371 / 374	ABNESE010000196.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314379 SAMN37609119-rid19564343.denovo.201, whole genome shotgun sequence	215..585																																									avrA	ABNESE010000011.1	83935..84804	99.885	870	0						
GCA_032260205.1_PDT001909697.1_genomic.fna	Salmonella_enterica	0.5219	61.803 KB	26	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	-:f,g:-	3	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,tet(A),tet(A)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	-	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNESF010000019.1 Salmonella enterica subsp. enterica serovar Rissen strain FSIS22314377 SAMN37609112-rid19564333.denovo.019, whole genome shotgun sequence	52458..52895	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNESF010000159.1 Salmonella enterica subsp. enterica serovar Rissen strain FSIS22314377 SAMN37609112-rid19564333.guided.076, whole genome shotgun sequence	992..1429	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNESF010000077.1 Salmonella enterica subsp. enterica serovar Rissen strain FSIS22314377 SAMN37609112-rid19564333.denovo.079, whole genome shotgun sequence	12342..13487	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNESF010000161.1 Salmonella enterica subsp. enterica serovar Rissen strain FSIS22314377 SAMN37609112-rid19564333.guided.106, whole genome shotgun sequence	1650..2795	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	tet(A)	100	1200/1200	ABNESF010000107.1 Salmonella enterica subsp. enterica serovar Rissen strain FSIS22314377 SAMN37609112-rid19564333.denovo.112, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNESF010000162.1 Salmonella enterica subsp. enterica serovar Rissen strain FSIS22314377 SAMN37609112-rid19564333.guided.111, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNESF010000105.1 Salmonella enterica subsp. enterica serovar Rissen strain FSIS22314377 SAMN37609112-rid19564333.denovo.109, whole genome shotgun sequence	4395..4536																																																						avrA	ABNESF010000005.1	96197..97066	99.195	870	0						
GCA_032260225.1_PDT001909695.1_genomic.fna	Salmonella_enterica	0.5228	58.363 KB	27	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNESH010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314369 SAMN37609103-rid19564753.denovo.015, whole genome shotgun sequence	76124..76561	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNESH010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314369 SAMN37609103-rid19564753.denovo.065, whole genome shotgun sequence	22844..23635	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNESH010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314369 SAMN37609103-rid19564753.denovo.065, whole genome shotgun sequence	22844..23635	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNESH010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314369 SAMN37609103-rid19564753.guided.105, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNESH010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314369 SAMN37609103-rid19564753.guided.105, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNESH010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314369 SAMN37609103-rid19564753.guided.110, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNESH010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314369 SAMN37609103-rid19564753.denovo.065, whole genome shotgun sequence	21500..22339	Sulfamethoxazole	U12338	sul1	100	840/840	ABNESH010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314369 SAMN37609103-rid19564753.guided.105, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNESH010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314369 SAMN37609103-rid19564753.denovo.065, whole genome shotgun sequence	7784..8983	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNESH010000169.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314369 SAMN37609103-rid19564753.guided.096, whole genome shotgun sequence	4455..5654	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNESH010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314369 SAMN37609103-rid19564753.denovo.068, whole genome shotgun sequence	9109..9668																																																						avrA	ABNESH010000041.1	39571..40440	99.655	870	0						
GCA_032260235.1_PDT001909696.1_genomic.fna	Salmonella_enterica	0.5231	60.926 KB	27	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNESG010000013.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314371 SAMN37609106-rid19564323.denovo.013, whole genome shotgun sequence	75539..75976	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNESG010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314371 SAMN37609106-rid19564323.denovo.097, whole genome shotgun sequence	11969..12760	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNESG010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314371 SAMN37609106-rid19564323.denovo.097, whole genome shotgun sequence	11969..12760	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNESG010000177.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314371 SAMN37609106-rid19564323.guided.037, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNESG010000179.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314371 SAMN37609106-rid19564323.guided.096, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNESG010000179.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314371 SAMN37609106-rid19564323.guided.096, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNESG010000136.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314371 SAMN37609106-rid19564323.denovo.142, whole genome shotgun sequence	901..1776	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNESG010000182.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314371 SAMN37609106-rid19564323.guided.139, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNESG010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314371 SAMN37609106-rid19564323.denovo.097, whole genome shotgun sequence	10625..11464	Sulfamethoxazole	U12338	sul1	100	840/840	ABNESG010000179.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314371 SAMN37609106-rid19564323.guided.096, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNESG010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314371 SAMN37609106-rid19564323.denovo.125, whole genome shotgun sequence	1858..3057	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNESG010000181.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314371 SAMN37609106-rid19564323.guided.126, whole genome shotgun sequence	1581..2780	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNESG010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314371 SAMN37609106-rid19564323.denovo.130, whole genome shotgun sequence	2110..2669																																																						avrA	ABNESG010000016.1	81701..82570	99.655	870	0						
GCA_032260265.1_PDT001909694.1_genomic.fna	Salmonella_enterica	0.5238	44.933 KB	33	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNESI010000054.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314366 SAMN37609100-rid19564313.denovo.054, whole genome shotgun sequence	15440..15877	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNESI010000195.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314366 SAMN37609100-rid19564313.guided.084, whole genome shotgun sequence	15486..15923	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNESI010000147.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314366 SAMN37609100-rid19564313.denovo.150, whole genome shotgun sequence	557..687																																																						avrA	ABNESI010000029.1	43542..44411	99.54	870	0						
GCA_032260285.1_PDT001909692.1_genomic.fna	Salmonella_enterica	0.518	86.344 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNESK010000021.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314359 SAMN37609074-rid19564293.denovo.021, whole genome shotgun sequence	1025..1462	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNESK010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314359 SAMN37609074-rid19564293.denovo.048, whole genome shotgun sequence	2315..3151	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNESK010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314359 SAMN37609074-rid19564293.denovo.048, whole genome shotgun sequence	1513..2315	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNESK010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314359 SAMN37609074-rid19564293.denovo.048, whole genome shotgun sequence	1512..2315	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNESK010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314359 SAMN37609074-rid19564293.denovo.048, whole genome shotgun sequence	1512..2315	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNESK010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314359 SAMN37609074-rid19564293.denovo.048, whole genome shotgun sequence	1512..2315	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNESK010000139.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314359 SAMN37609074-rid19564293.guided.064, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNESK010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314359 SAMN37609074-rid19564293.guided.091, whole genome shotgun sequence	2356..3192	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNESK010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314359 SAMN37609074-rid19564293.guided.091, whole genome shotgun sequence	1554..2356	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNESK010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314359 SAMN37609074-rid19564293.guided.091, whole genome shotgun sequence	1553..2356	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNESK010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314359 SAMN37609074-rid19564293.guided.091, whole genome shotgun sequence	1553..2356	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNESK010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314359 SAMN37609074-rid19564293.guided.091, whole genome shotgun sequence	1553..2356	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNESK010000063.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314359 SAMN37609074-rid19564293.denovo.063, whole genome shotgun sequence	2527..2853	enterobacteriales	IncHI2A	99.52	630 / 630	ABNESK010000093.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314359 SAMN37609074-rid19564293.denovo.097, whole genome shotgun sequence	1569..2198		enterobacteriales	IncX1	100	373 / 373	ABNESK010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314359 SAMN37609074-rid19564293.denovo.120, whole genome shotgun sequence	1121..1493																																									avrA	ABNESK010000041.1	39498..40367	99.655	870	0						
GCA_032260305.1_PDT001909693.1_genomic.fna	Salmonella_enterica	0.5241	83.254 KB	17	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNESJ010000005.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22314363 SAMN37609075-rid19564303.denovo.005, whole genome shotgun sequence	12543..12980	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNESJ010000114.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22314363 SAMN37609075-rid19564303.guided.081, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032260705.1_PDT001909677.1_genomic.fna	Salmonella_enterica	0.5214	620.686 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	2	Col440I,ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNESZ010000001.1 Salmonella enterica strain PNUSAS386298 SAMN37608999-rid19564183.denovo.01, whole genome shotgun sequence	853214..853651	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNESZ010000021.1 Salmonella enterica strain PNUSAS386298 SAMN37608999-rid19564183.denovo.24, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNESZ010000021.1 Salmonella enterica strain PNUSAS386298 SAMN37608999-rid19564183.denovo.24, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNESZ010000021.1 Salmonella enterica strain PNUSAS386298 SAMN37608999-rid19564183.denovo.24, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNESZ010000021.1 Salmonella enterica strain PNUSAS386298 SAMN37608999-rid19564183.denovo.24, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNESZ010000021.1 Salmonella enterica strain PNUSAS386298 SAMN37608999-rid19564183.denovo.24, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNESZ010000041.1 Salmonella enterica strain PNUSAS386298 SAMN37608999-rid19564183.guided.08, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNESZ010000044.1 Salmonella enterica strain PNUSAS386298 SAMN37608999-rid19564183.guided.25, whole genome shotgun sequence	1679..2515	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNESZ010000044.1 Salmonella enterica strain PNUSAS386298 SAMN37608999-rid19564183.guided.25, whole genome shotgun sequence	877..1679	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNESZ010000044.1 Salmonella enterica strain PNUSAS386298 SAMN37608999-rid19564183.guided.25, whole genome shotgun sequence	876..1679	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNESZ010000044.1 Salmonella enterica strain PNUSAS386298 SAMN37608999-rid19564183.guided.25, whole genome shotgun sequence	876..1679	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNESZ010000044.1 Salmonella enterica strain PNUSAS386298 SAMN37608999-rid19564183.guided.25, whole genome shotgun sequence	876..1679	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNESZ010000023.1 Salmonella enterica strain PNUSAS386298 SAMN37608999-rid19564183.denovo.28, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNESZ010000045.1 Salmonella enterica strain PNUSAS386298 SAMN37608999-rid19564183.guided.27, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	ABNESZ010000025.1 Salmonella enterica strain PNUSAS386298 SAMN37608999-rid19564183.denovo.30, whole genome shotgun sequence	1566..1675	enterobacteriales	ColpVC	98.96	193 / 193	ABNESZ010000026.1 Salmonella enterica strain PNUSAS386298 SAMN37608999-rid19564183.denovo.31, whole genome shotgun sequence	799..991																																																avrA	ABNESZ010000003.1	525820..526689	99.655	870	0						
GCA_032260725.1_PDT001909679.1_genomic.fna	Salmonella_enterica	0.5205	430.342 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNESX010000001.1 Salmonella enterica strain PNUSAS386293 SAMN37609001-rid19564203.denovo.01, whole genome shotgun sequence	477445..477882	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNESX010000048.1 Salmonella enterica strain PNUSAS386293 SAMN37609001-rid19564203.guided.10, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNESX010000010.1	93876..94746	99.196	871	0						
GCA_032260765.1_PDT001909678.1_genomic.fna	Salmonella_enterica	0.5207	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	Col156,Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNESY010000001.1 Salmonella enterica strain PNUSAS386295 SAMN37609002-rid19564193.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNESY010000029.1 Salmonella enterica strain PNUSAS386295 SAMN37609002-rid19564193.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col156	90.79	152 / 154	ABNESY010000017.1 Salmonella enterica strain PNUSAS386295 SAMN37609002-rid19564193.denovo.20, whole genome shotgun sequence	3270..3421	enterobacteriales	Col156	96.75	154 / 154	ABNESY010000019.1 Salmonella enterica strain PNUSAS386295 SAMN37609002-rid19564193.denovo.22, whole genome shotgun sequence	3123..3276		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNESY010000012.1 Salmonella enterica strain PNUSAS386295 SAMN37609002-rid19564193.denovo.14, whole genome shotgun sequence	49285..49927		enterobacteriales	IncFII(S)	100	262 / 262	ABNESY010000012.1 Salmonella enterica strain PNUSAS386295 SAMN37609002-rid19564193.denovo.14, whole genome shotgun sequence	5032..5293																																		avrA	ABNESY010000002.1	553635..554504	99.54	870	0						
GCA_032260865.1_PDT001909665.1_genomic.fna	Salmonella_enterica	0.5208	307.066 KB	6	aroC_10,dnaN_1263,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	9720	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_1263	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNETJ010000003.1 Salmonella enterica strain PNUSAS386294 SAMN37609006-rid19564683.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNETJ010000049.1 Salmonella enterica strain PNUSAS386294 SAMN37609006-rid19564683.guided.20, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNETJ010000016.1 Salmonella enterica strain PNUSAS386294 SAMN37609006-rid19564683.denovo.16, whole genome shotgun sequence	44752..45394	enterobacteriales	IncFII(S)	100	262 / 262	ABNETJ010000016.1 Salmonella enterica strain PNUSAS386294 SAMN37609006-rid19564683.denovo.16, whole genome shotgun sequence	29405..29666		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNETJ010000025.1 Salmonella enterica strain PNUSAS386294 SAMN37609006-rid19564683.denovo.27, whole genome shotgun sequence	21748..21889																																									avrA	ABNETJ010000004.1	174651..175519	100	869	0						
GCA_032260885.1_PDT001909666.1_genomic.fna	Salmonella_enterica	0.5209	390.322 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_524	2220	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_524	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNETK010000001.1 Salmonella enterica strain PNUSAS386300 SAMN37609000-rid19564093.denovo.01, whole genome shotgun sequence	498145..498582	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNETK010000033.1 Salmonella enterica strain PNUSAS386300 SAMN37609000-rid19564093.guided.17, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNETK010000008.1	140447..141316	99.54	870	0						
GCA_032260905.1_PDT001909663.1_genomic.fna	Salmonella_enterica	0.5208	489.739 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNETM010000001.1 Salmonella enterica strain PNUSAS386299 SAMN37609005-rid19564073.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNETM010000025.1 Salmonella enterica strain PNUSAS386299 SAMN37609005-rid19564073.guided.10, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNETM010000011.1 Salmonella enterica strain PNUSAS386299 SAMN37609005-rid19564073.denovo.13, whole genome shotgun sequence	9588..10230	enterobacteriales	IncFII(S)	100	262 / 262	ABNETM010000011.1 Salmonella enterica strain PNUSAS386299 SAMN37609005-rid19564073.denovo.13, whole genome shotgun sequence	54222..54483																																																avrA	ABNETM010000002.1	553181..554050	99.54	870	0						
GCA_032260925.1_PDT001909664.1_genomic.fna	Salmonella_enterica	0.5211	430.003 KB	5	aroC_533,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	2362	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_533	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNETL010000001.1 Salmonella enterica strain PNUSAS386296 SAMN37609003-rid19564083.denovo.01, whole genome shotgun sequence	561489..561926	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNETL010000034.1 Salmonella enterica strain PNUSAS386296 SAMN37609003-rid19564083.guided.21, whole genome shotgun sequence	12526..12963	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNETL010000010.1	140203..141071	99.195	870	0						
GCA_032260945.1_PDT001909662.1_genomic.fna	Salmonella_enterica	0.5213	517.11 KB	4	aroC_81,dnaN_69,hemD_36,hisD_12,purE_68,sucA_12,thrA_17	203	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_69	hemD	100	100	hemD_36	hisD	100	100	hisD_12	purE	100	100	purE_68	sucA	100	100	sucA_12	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNETN010000001.1 Salmonella enterica strain PNUSAS386297 SAMN37609004-rid19564063.denovo.01, whole genome shotgun sequence	322626..323063	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNETN010000036.1 Salmonella enterica strain PNUSAS386297 SAMN37609004-rid19564063.guided.13, whole genome shotgun sequence	44317..44754	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNETN010000002.1	554513..555382	99.655	870	0						
GCA_032260965.1_PDT001909661.1_genomic.fna	Salmonella_enterica	0.5221	324.384 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNETO010000003.1 Salmonella enterica strain PNUSAS387717 SAMN37608990-rid19564053.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNETO010000060.1 Salmonella enterica strain PNUSAS387717 SAMN37608990-rid19564053.guided.33, whole genome shotgun sequence	4153..4590	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNETO010000015.1 Salmonella enterica strain PNUSAS387717 SAMN37608990-rid19564053.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNETO010000015.1 Salmonella enterica strain PNUSAS387717 SAMN37608990-rid19564053.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNETO010000001.1	401421..402289	100	869	0						
GCA_032260985.1_PDT001909660.1_genomic.fna	Salmonella_enterica	0.5215	298.233 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNETP010000002.1 Salmonella enterica strain PNUSAS387709 SAMN37608980-rid19564673.denovo.02, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNETP010000042.1 Salmonella enterica strain PNUSAS387709 SAMN37608980-rid19564673.guided.28, whole genome shotgun sequence	2796..3233	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNETP010000013.1	93868..94736	99.195	870	0						
GCA_032261005.1_PDT001909659.1_genomic.fna	Salmonella_enterica	0.5209	285.878 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNETQ010000012.1 Salmonella enterica strain PNUSAS387713 SAMN37608988-rid19564043.denovo.12, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNETQ010000046.1 Salmonella enterica strain PNUSAS387713 SAMN37608988-rid19564043.guided.29, whole genome shotgun sequence	10565..11002	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNETQ010000020.1 Salmonella enterica strain PNUSAS387713 SAMN37608988-rid19564043.denovo.20, whole genome shotgun sequence	34958..35491																																																						avrA	ABNETQ010000002.1	39472..40338	98.966	870	0						
GCA_032261025.1_PDT001909658.1_genomic.fna	Salmonella_enterica	0.5203	446.762 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNETR010000001.1 Salmonella enterica strain PNUSAS387710 SAMN37608983-rid19564033.denovo.01, whole genome shotgun sequence	254897..255334	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNETR010000025.1 Salmonella enterica strain PNUSAS387710 SAMN37608983-rid19564033.guided.18, whole genome shotgun sequence	6259..6696	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNETR010000003.1	406412..407280	99.425	870	0						
GCA_032261045.1_PDT001909657.1_genomic.fna	Salmonella_enterica	0.5209	279.983 KB	7	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNETT010000010.1 Salmonella enterica strain PNUSAS387708 SAMN37608986-rid19564023.denovo.10, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNETT010000055.1 Salmonella enterica strain PNUSAS387708 SAMN37608986-rid19564023.guided.36, whole genome shotgun sequence	4249..4686	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNETT010000022.1 Salmonella enterica strain PNUSAS387708 SAMN37608986-rid19564023.denovo.22, whole genome shotgun sequence	34921..35454																																																						avrA	ABNETT010000001.1	39478..40344	98.966	870	0						
GCA_032261065.1_PDT001909656.1_genomic.fna	Salmonella_enterica	0.5215	558.057 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(A),tet(A)	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNETS010000001.1 Salmonella enterica strain PNUSAS387718 SAMN37608982-rid19564013.denovo.01, whole genome shotgun sequence	778955..779392	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNETS010000026.1 Salmonella enterica strain PNUSAS387718 SAMN37608982-rid19564013.guided.14, whole genome shotgun sequence	206..643	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNETS010000021.1 Salmonella enterica strain PNUSAS387718 SAMN37608982-rid19564013.denovo.26, whole genome shotgun sequence	274..918	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNETS010000030.1 Salmonella enterica strain PNUSAS387718 SAMN37608982-rid19564013.guided.25, whole genome shotgun sequence	315..959	Ciprofloxacin	EU432277	tet(A)	100	1200/1200	ABNETS010000015.1 Salmonella enterica strain PNUSAS387718 SAMN37608982-rid19564013.denovo.16, whole genome shotgun sequence	2604..3803	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNETS010000027.1 Salmonella enterica strain PNUSAS387718 SAMN37608982-rid19564013.guided.17, whole genome shotgun sequence	2645..3844	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNETS010000015.1 Salmonella enterica strain PNUSAS387718 SAMN37608982-rid19564013.denovo.16, whole genome shotgun sequence	9166..9307	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNETS010000027.1 Salmonella enterica strain PNUSAS387718 SAMN37608982-rid19564013.guided.17, whole genome shotgun sequence	9207..9348																																																avrA	ABNETS010000003.1	138354..139223	98.966	870	0						
GCA_032261085.1_PDT001909655.1_genomic.fna	Salmonella_enterica	0.5209	202.867 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNETU010000001.1 Salmonella enterica strain PNUSAS387722 SAMN37608985-rid19564663.denovo.01, whole genome shotgun sequence	232954..233391	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNETU010000053.1 Salmonella enterica strain PNUSAS387722 SAMN37608985-rid19564663.guided.33, whole genome shotgun sequence	19695..20132	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNETU010000027.1 Salmonella enterica strain PNUSAS387722 SAMN37608985-rid19564663.denovo.27, whole genome shotgun sequence	32699..32840																																																						avrA	ABNETU010000003.1	174564..175432	99.77	870	0						
GCA_032261105.1_PDT001909654.1_genomic.fna	Salmonella_enterica	0.5217	207.445 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNETW010000001.1 Salmonella enterica strain PNUSAS387723 SAMN37608979-rid19564003.denovo.01, whole genome shotgun sequence	232954..233391	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNETW010000055.1 Salmonella enterica strain PNUSAS387723 SAMN37608979-rid19564003.guided.38, whole genome shotgun sequence	9834..10271	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNETW010000003.1	207766..208634	99.77	870	0						
GCA_032261125.1_PDT001909653.1_genomic.fna	Salmonella_enterica	0.5219	202.867 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNETV010000001.1 Salmonella enterica strain PNUSAS387705 SAMN37608981-rid19564653.denovo.01, whole genome shotgun sequence	232954..233391	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNETV010000060.1 Salmonella enterica strain PNUSAS387705 SAMN37608981-rid19564653.guided.47, whole genome shotgun sequence	808..1245	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNETV010000003.1	207907..208775	99.77	870	0						
GCA_032261145.1_PDT001909652.1_genomic.fna	Salmonella_enterica	0.5203	480.609 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNETX010000001.1 Salmonella enterica strain PNUSAS387716 SAMN37608987-rid19563993.denovo.01, whole genome shotgun sequence	625113..625550	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNETX010000027.1 Salmonella enterica strain PNUSAS387716 SAMN37608987-rid19563993.guided.20, whole genome shotgun sequence	1877..2314	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNETX010000003.1	509973..510841	99.425	870	0						
GCA_032261165.1_PDT001909651.1_genomic.fna	Salmonella_enterica	0.5212	196.982 KB	9	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNETY010000006.1 Salmonella enterica strain PNUSAS387711 SAMN37608974-rid19563983.denovo.06, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNETY010000051.1 Salmonella enterica strain PNUSAS387711 SAMN37608974-rid19563983.guided.39, whole genome shotgun sequence	3002..3439	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNETY010000023.1 Salmonella enterica strain PNUSAS387711 SAMN37608974-rid19563983.denovo.23, whole genome shotgun sequence	2550..3083																																																						avrA	ABNETY010000011.1	153640..154509	99.425	870	0						
GCA_032261185.1_PDT001909650.1_genomic.fna	Salmonella_enterica	0.5215	449.712 KB	4	aroC_5,dnaN_75,hemD_8,hisD_96,purE_39,sucA_146,thrA_97	443	35:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_75	hemD	100	100	hemD_8	hisD	100	100	hisD_96	purE	100	100	purE_39	sucA	100	100	sucA_146	thrA	100	100	thrA_97	35	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Monschaui		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNETZ010000001.1 Salmonella enterica strain PNUSAS387707 SAMN37608976-rid19564643.denovo.01, whole genome shotgun sequence	491665..492102	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNETZ010000023.1 Salmonella enterica strain PNUSAS387707 SAMN37608976-rid19564643.guided.17, whole genome shotgun sequence	16433..16870	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032261205.1_PDT001909649.1_genomic.fna	Salmonella_enterica	0.5207	202.867 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI2	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNEUB010000001.1 Salmonella enterica strain PNUSAS387719 SAMN37608972-rid19563973.denovo.01, whole genome shotgun sequence	145381..145818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNEUB010000057.1 Salmonella enterica strain PNUSAS387719 SAMN37608972-rid19563973.guided.43, whole genome shotgun sequence	2362..2799	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI2	99.69	324 / 324	ABNEUB010000021.1 Salmonella enterica strain PNUSAS387719 SAMN37608972-rid19563973.denovo.21, whole genome shotgun sequence	27261..27584																																																						avrA	ABNEUB010000003.1	207907..208775	99.77	870	0						
GCA_032261225.1_PDT001909648.1_genomic.fna	Salmonella_enterica	0.5206	400.804 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNEUA010000004.1 Salmonella enterica strain PNUSAS387706 SAMN37608973-rid19564633.denovo.04, whole genome shotgun sequence	162633..163070	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNEUA010000028.1 Salmonella enterica strain PNUSAS387706 SAMN37608973-rid19564633.guided.24, whole genome shotgun sequence	489..926	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABNEUA010000016.1 Salmonella enterica strain PNUSAS387706 SAMN37608973-rid19564633.denovo.16, whole genome shotgun sequence	32011..32384																																																						avrA	ABNEUA010000010.1	174992..175861	99.54	870	0						
GCA_032261245.1_PDT001909647.1_genomic.fna	Salmonella_enterica	0.521	449.799 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNEUC010000001.1 Salmonella enterica strain PNUSAS387721 SAMN37608978-rid19563963.denovo.01, whole genome shotgun sequence	414575..415012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNEUC010000028.1 Salmonella enterica strain PNUSAS387721 SAMN37608978-rid19563963.guided.21, whole genome shotgun sequence	5029..5466	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032261265.1_PDT001909646.1_genomic.fna	Salmonella_enterica	0.5205	247.711 KB	7	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	16	aac(6')-Iaa,aadA2,aadA1,aadA1,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aadA1,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,mph(A),mph(A),floR,catA2,floR,floR,catA2,qnrS1,qnrS1,sul1,sul3,sul1,sul3,tet(M),tet(A),tet(M),tet(A),dfrA12,dfrA12	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNEUE010000004.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.04, whole genome shotgun sequence	136560..136997	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNEUE010000027.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.27, whole genome shotgun sequence	3370..4161	Spectinomycin, Streptomycin	JQ364967	aadA1	99.87	792/792	ABNEUE010000029.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.35, whole genome shotgun sequence	1160..1951	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	ABNEUE010000029.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.35, whole genome shotgun sequence	1160..1951	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNEUE010000034.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.41, whole genome shotgun sequence	1739..2575	Streptomycin	M28829	aph(3')-Ia	99.88	816/816	ABNEUE010000034.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.41, whole genome shotgun sequence	588..1403	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EF015636	aph(3'')-Ib	100	804/804	ABNEUE010000034.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.41, whole genome shotgun sequence	2575..3378	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNEUE010000041.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.29, whole genome shotgun sequence	20..457	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNEUE010000044.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.33, whole genome shotgun sequence	2788..3579	Spectinomycin, Streptomycin	JQ364967	aadA1	99.87	792/792	ABNEUE010000045.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.34, whole genome shotgun sequence	1201..1992	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	ABNEUE010000045.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.34, whole genome shotgun sequence	1201..1992	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNEUE010000051.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.47, whole genome shotgun sequence	901..1737	Streptomycin	M28829	aph(3')-Ia	99.88	816/816	ABNEUE010000051.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.47, whole genome shotgun sequence	2073..2888	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EF015636	aph(3'')-Ib	100	804/804	ABNEUE010000051.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.47, whole genome shotgun sequence	98..901	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNEUE010000028.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.31, whole genome shotgun sequence	7881..8741	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNEUE010000048.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.43, whole genome shotgun sequence	1030..1890	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNEUE010000033.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.40, whole genome shotgun sequence	3147..4052	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	ABNEUE010000053.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.51, whole genome shotgun sequence	110..1015	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNEUE010000032.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.39, whole genome shotgun sequence	2154..3367	Chloramphenicol, Florfenicol	AF118107	catA2	96.24	558/642	ABNEUE010000037.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.50, whole genome shotgun sequence	717..1274	Chloramphenicol	X53796	floR	98.19	1214/1215	ABNEUE010000049.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.44, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNEUE010000050.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.45, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	catA2	96.25	560/642	ABNEUE010000052.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.49, whole genome shotgun sequence	707..1266	Chloramphenicol	X53796	qnrS1	100	657/657	ABNEUE010000027.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.27, whole genome shotgun sequence	11947..12603	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNEUE010000043.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.32, whole genome shotgun sequence	1538..2194	Ciprofloxacin	AB187515	sul1	100	840/840	ABNEUE010000027.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.27, whole genome shotgun sequence	2026..2865	Sulfamethoxazole	U12338	sul3	100	792/792	ABNEUE010000029.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.35, whole genome shotgun sequence	3633..4424	Sulfamethoxazole	AJ459418	sul1	100	840/840	ABNEUE010000044.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.33, whole genome shotgun sequence	4084..4923	Sulfamethoxazole	U12338	sul3	100	792/792	ABNEUE010000045.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.34, whole genome shotgun sequence	3674..4465	Sulfamethoxazole	AJ459418	tet(M)	99.9	1920/1920	ABNEUE010000028.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.31, whole genome shotgun sequence	3866..5785	Doxycycline, Tetracycline, Minocycline	X75073	tet(A)	99.92	1200/1200	ABNEUE010000030.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.37, whole genome shotgun sequence	3215..4414	Doxycycline, Tetracycline	AJ517790	tet(M)	99.9	1920/1920	ABNEUE010000046.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.36, whole genome shotgun sequence	3907..5826	Doxycycline, Tetracycline, Minocycline	X75073	tet(A)	99.92	1200/1200	ABNEUE010000047.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.42, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABNEUE010000027.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.denovo.27, whole genome shotgun sequence	4569..5066	Trimethoprim	AM040708	dfrA12	100	498/498	ABNEUE010000044.1 Salmonella enterica strain PNUSAS387715 SAMN37608977-rid19563953.guided.33, whole genome shotgun sequence	1883..2380	Trimethoprim	AM040708																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNEUE010000002.1	150173..151039	99.08	870	0						
GCA_032261285.1_PDT001909645.1_genomic.fna	Salmonella_enterica	0.5216	298.233 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNEUD010000002.1 Salmonella enterica strain PNUSAS387720 SAMN37608975-rid19564623.denovo.02, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNEUD010000039.1 Salmonella enterica strain PNUSAS387720 SAMN37608975-rid19564623.guided.27, whole genome shotgun sequence	3945..4382	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNEUD010000010.1	150709..151577	99.195	870	0						
GCA_032261305.1_PDT001909644.1_genomic.fna	Salmonella_enterica	0.5198	366.643 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNEUF010000001.1 Salmonella enterica strain PNUSAS387712 SAMN37608989-rid19563943.denovo.01, whole genome shotgun sequence	477381..477818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNEUF010000032.1 Salmonella enterica strain PNUSAS387712 SAMN37608989-rid19563943.guided.27, whole genome shotgun sequence	1004..1441	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNEUF010000017.1 Salmonella enterica strain PNUSAS387712 SAMN37608989-rid19563943.denovo.17, whole genome shotgun sequence	4016..4549	enterobacteriales	IncX1	98.4	374 / 374	ABNEUF010000020.1 Salmonella enterica strain PNUSAS387712 SAMN37608989-rid19563943.denovo.20, whole genome shotgun sequence	6956..7329																																																avrA	ABNEUF010000011.1	150695..151565	99.196	871	0						
GCA_032261325.1_PDT001909643.1_genomic.fna	Salmonella_enterica	0.5216	245.339 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNEUG010000001.1 Salmonella enterica strain PNUSAS387714 SAMN37608984-rid19564613.denovo.01, whole genome shotgun sequence	483807..484244	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNEUG010000016.1 Salmonella enterica strain PNUSAS387714 SAMN37608984-rid19564613.denovo.16, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNEUG010000016.1 Salmonella enterica strain PNUSAS387714 SAMN37608984-rid19564613.denovo.16, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNEUG010000050.1 Salmonella enterica strain PNUSAS387714 SAMN37608984-rid19564613.guided.27, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNEUG010000050.1 Salmonella enterica strain PNUSAS387714 SAMN37608984-rid19564613.guided.27, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNEUG010000051.1 Salmonella enterica strain PNUSAS387714 SAMN37608984-rid19564613.guided.37, whole genome shotgun sequence	6921..7358	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNEUG010000016.1 Salmonella enterica strain PNUSAS387714 SAMN37608984-rid19564613.denovo.16, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNEUG010000050.1 Salmonella enterica strain PNUSAS387714 SAMN37608984-rid19564613.guided.27, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNEUG010000016.1 Salmonella enterica strain PNUSAS387714 SAMN37608984-rid19564613.denovo.16, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNEUG010000050.1 Salmonella enterica strain PNUSAS387714 SAMN37608984-rid19564613.guided.27, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNEUG010000030.1 Salmonella enterica strain PNUSAS387714 SAMN37608984-rid19564613.denovo.32, whole genome shotgun sequence	9108..9667																																																						avrA	ABNEUG010000003.1	95044..95913	99.655	870	0						
GCA_032261345.1_PDT001909642.1_genomic.fna	Salmonella_enterica	0.5218	222.274 KB	7	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNEUH010000001.1 Salmonella enterica strain PNUSAS387687 SAMN37608969-rid19563933.denovo.01, whole genome shotgun sequence	482679..483116	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNEUH010000077.1 Salmonella enterica strain PNUSAS387687 SAMN37608969-rid19563933.guided.25, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNEUH010000031.1 Salmonella enterica strain PNUSAS387687 SAMN37608969-rid19563933.denovo.32, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNEUH010000031.1 Salmonella enterica strain PNUSAS387687 SAMN37608969-rid19563933.denovo.32, whole genome shotgun sequence	9325..9586																																																avrA	ABNEUH010000005.1	95312..96181	99.885	870	0						
GCA_032261365.1_PDT001909641.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNEUI010000001.1 Salmonella enterica strain PNUSAS387689 SAMN37608971-rid19563923.denovo.01, whole genome shotgun sequence	542744..543181	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNEUI010000024.1 Salmonella enterica strain PNUSAS387689 SAMN37608971-rid19563923.guided.15, whole genome shotgun sequence	32197..32634	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNEUI010000016.1 Salmonella enterica strain PNUSAS387689 SAMN37608971-rid19563923.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNEUI010000013.1 Salmonella enterica strain PNUSAS387689 SAMN37608971-rid19563923.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNEUI010000002.1	553636..554505	99.54	870	0						
GCA_032261385.1_PDT001909640.1_genomic.fna	Salmonella_enterica	0.5219	269.445 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNEUJ010000002.1 Salmonella enterica strain PNUSAS387685 SAMN37608970-rid19564603.denovo.02, whole genome shotgun sequence	68379..68816	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNEUJ010000069.1 Salmonella enterica strain PNUSAS387685 SAMN37608970-rid19564603.guided.30, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNEUJ010000015.1 Salmonella enterica strain PNUSAS387685 SAMN37608970-rid19564603.denovo.15, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNEUJ010000015.1 Salmonella enterica strain PNUSAS387685 SAMN37608970-rid19564603.denovo.15, whole genome shotgun sequence	22559..22820																																																avrA	ABNEUJ010000004.1	95312..96180	100	869	0						
GCA_032261405.1_PDT001909639.1_genomic.fna	Salmonella_enterica	0.5208	564.49 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	13	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA2b,aac(6')-Iaa,aadA2b,aph(6)-Id,aph(3'')-Ib,blaCARB-2,blaCARB-2,mph(A),erm(B),mph(A),erm(B),floR,floR,qnrA1,qnrA1,sul1,sul2,sul2,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),Col156,IncR,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNEUK010000001.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.01, whole genome shotgun sequence	150017..150454	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNEUK010000026.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.30, whole genome shotgun sequence	105..941	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNEUK010000026.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.30, whole genome shotgun sequence	941..1744	Streptomycin	AF321551	aadA2b	99.87	780/780	ABNEUK010000030.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.34, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNEUK010000055.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.guided.16, whole genome shotgun sequence	8005..8442	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNEUK010000061.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.guided.43, whole genome shotgun sequence	2779..3558	Spectinomycin, Streptomycin	D43625	aph(6)-Id	100	837/837	ABNEUK010000062.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.guided.44, whole genome shotgun sequence	2661..3497	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNEUK010000062.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.guided.44, whole genome shotgun sequence	1858..2661	Streptomycin	AF321551	blaCARB-2	100	867/867	ABNEUK010000030.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.34, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNEUK010000061.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.guided.43, whole genome shotgun sequence	1783..2649	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNEUK010000025.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.28, whole genome shotgun sequence	6582..7487	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	erm(B)	99.86	738/738	ABNEUK010000034.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.39, whole genome shotgun sequence	292..1029	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	JN899585	mph(A)	99.89	906/906	ABNEUK010000058.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.guided.29, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	erm(B)	99.86	738/738	ABNEUK010000059.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.guided.38, whole genome shotgun sequence	333..1070	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	JN899585	floR	98.19	1214/1215	ABNEUK010000036.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.42, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNEUK010000060.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.guided.41, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNEUK010000030.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.34, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNEUK010000061.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.guided.43, whole genome shotgun sequence	867..1523	Ciprofloxacin	AY070235	sul1	100	840/840	ABNEUK010000025.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.28, whole genome shotgun sequence	432..1271	Sulfamethoxazole	U12338	sul2	100	816/816	ABNEUK010000026.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.30, whole genome shotgun sequence	1805..2620	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNEUK010000062.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.guided.44, whole genome shotgun sequence	982..1797	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNEUK010000064.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.guided.49, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1240/1275	ABNEUK010000037.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.46, whole genome shotgun sequence	2223..3462	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNEUK010000063.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.guided.45, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNEUK010000037.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.46, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNEUK010000063.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.guided.45, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNEUK010000026.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.30, whole genome shotgun sequence	3147..3277	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNEUK010000062.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.guided.44, whole genome shotgun sequence	325..455		enterobacteriales	Col156	94.81	154 / 154	ABNEUK010000029.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.33, whole genome shotgun sequence	3338..3491		enterobacteriales	IncR	100	251 / 251	ABNEUK010000022.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.25, whole genome shotgun sequence	4434..4684		enterobacteriales	IncX1	94.92	374 / 374	ABNEUK010000015.1 Salmonella enterica strain PNUSAS387692 SAMN37608966-rid19563913.denovo.15, whole genome shotgun sequence	13796..14169																											avrA	ABNEUK010000003.1	553479..554348	99.77	870	0						
GCA_032261425.1_PDT001909638.1_genomic.fna	Salmonella_enterica	0.5209	455.628 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNEUM010000001.1 Salmonella enterica strain PNUSAS387693 SAMN37608967-rid19564593.denovo.01, whole genome shotgun sequence	96304..96741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNEUM010000034.1 Salmonella enterica strain PNUSAS387693 SAMN37608967-rid19564593.guided.18, whole genome shotgun sequence	13023..13460	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNEUM010000002.1	496990..497858	99.425	870	0						
GCA_032261445.1_PDT001909637.1_genomic.fna	Salmonella_enterica	0.5216	279.269 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_110,sucA_9,thrA_2	302	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_110	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNEUN010000001.1 Salmonella enterica strain PNUSAS387691 SAMN37608968-rid19563903.denovo.01, whole genome shotgun sequence	207031..207468	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNEUN010000049.1 Salmonella enterica strain PNUSAS387691 SAMN37608968-rid19563903.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNEUN010000015.1 Salmonella enterica strain PNUSAS387691 SAMN37608968-rid19563903.denovo.15, whole genome shotgun sequence	6821..7463	enterobacteriales	IncFII(S)	100	262 / 262	ABNEUN010000015.1 Salmonella enterica strain PNUSAS387691 SAMN37608968-rid19563903.denovo.15, whole genome shotgun sequence	22548..22809																																																avrA	ABNEUN010000007.1	98459..99328	99.885	870	0						
GCA_032262415.1_PDT001909588.1_genomic.fna	Salmonella_enterica	0.5204	218.449 KB	8	aroC_10,dnaN_19,hemD_363,hisD_9,purE_5,sucA_9,thrA_2	2379	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_363	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNEWJ010000001.1 Salmonella enterica strain PNUSAS387699 SAMN37608915-rid19564443.denovo.01, whole genome shotgun sequence	91833..92270	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNEWJ010000082.1 Salmonella enterica strain PNUSAS387699 SAMN37608915-rid19564443.guided.14, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNEWJ010000041.1 Salmonella enterica strain PNUSAS387699 SAMN37608915-rid19564443.denovo.44, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNEWJ010000085.1 Salmonella enterica strain PNUSAS387699 SAMN37608915-rid19564443.guided.45, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABNEWJ010000003.1	93865..94734	99.885	870	0						
GCA_032262445.1_PDT001909587.1_genomic.fna	Salmonella_enterica	0.5215	372.749 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNEWK010000001.1 Salmonella enterica strain PNUSAS387688 SAMN37608916-rid19563553.denovo.01, whole genome shotgun sequence	498146..498583	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNEWK010000033.1 Salmonella enterica strain PNUSAS387688 SAMN37608916-rid19563553.guided.21, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNEWK010000009.1	140309..141178	99.54	870	0						
GCA_032262465.1_PDT001909585.1_genomic.fna	Salmonella_enterica	0.5195	382.173 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNEWM010000001.1 Salmonella enterica strain PNUSAS387694 SAMN37608913-rid19563533.denovo.01, whole genome shotgun sequence	300510..300947	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNEWM010000034.1 Salmonella enterica strain PNUSAS387694 SAMN37608913-rid19563533.guided.21, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032262485.1_PDT001909586.1_genomic.fna	Salmonella_enterica	0.5209	299.903 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNEWL010000001.1 Salmonella enterica strain PNUSAS387698 SAMN37608917-rid19563543.denovo.01, whole genome shotgun sequence	498162..498599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNEWL010000040.1 Salmonella enterica strain PNUSAS387698 SAMN37608917-rid19563543.guided.22, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNEWL010000008.1	140447..141316	99.54	870	0						
GCA_032262505.1_PDT001909584.1_genomic.fna	Salmonella_enterica	0.521	205.663 KB	8	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNEWN010000007.1 Salmonella enterica strain PNUSAS387690 SAMN37608914-rid19563523.denovo.07, whole genome shotgun sequence	70813..71250	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNEWN010000057.1 Salmonella enterica strain PNUSAS387690 SAMN37608914-rid19563523.guided.28, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNEWN010000011.1	131916..132785	98.966	870	0						
GCA_032262525.1_PDT001909583.1_genomic.fna	Salmonella_enterica	0.5212	304.307 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNEWO010000001.1 Salmonella enterica strain PNUSAS387695 SAMN37608911-rid19564433.denovo.01, whole genome shotgun sequence	770002..770439	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNEWO010000036.1 Salmonella enterica strain PNUSAS387695 SAMN37608911-rid19564433.guided.20, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNEWO010000021.1 Salmonella enterica strain PNUSAS387695 SAMN37608911-rid19564433.denovo.24, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNEWO010000018.1 Salmonella enterica strain PNUSAS387695 SAMN37608911-rid19564433.denovo.19, whole genome shotgun sequence	4416..4677																																																avrA	ABNEWO010000002.1	174828..175697	99.54	870	0						
GCA_032262545.1_PDT001909027.1_genomic.fna	Salmonella_enterica	0.5204	343.194 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	5	Col156,Col156,ColpVC,IncFII(pCRY),IncI1-I(Alpha),IncI2(Delta)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNEWP010000002.1 Salmonella enterica strain PNUSAS387686 SAMN37608909-rid19563513.denovo.02, whole genome shotgun sequence	145480..145917	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNEWP010000044.1 Salmonella enterica strain PNUSAS387686 SAMN37608909-rid19563513.guided.20, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	90.79	152 / 154	ABNEWP010000024.1 Salmonella enterica strain PNUSAS387686 SAMN37608909-rid19563513.denovo.27, whole genome shotgun sequence	3270..3421	enterobacteriales	Col156	93.51	154 / 154	ABNEWP010000026.1 Salmonella enterica strain PNUSAS387686 SAMN37608909-rid19563513.denovo.29, whole genome shotgun sequence	2614..2767		enterobacteriales	ColpVC	98.45	193 / 193	ABNEWP010000027.1 Salmonella enterica strain PNUSAS387686 SAMN37608909-rid19563513.denovo.30, whole genome shotgun sequence	1395..1587		enterobacteriales	IncFII(pCRY)	94.44	593 / 593	ABNEWP010000022.1 Salmonella enterica strain PNUSAS387686 SAMN37608909-rid19563513.denovo.23, whole genome shotgun sequence	18557..19149		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNEWP010000017.1 Salmonella enterica strain PNUSAS387686 SAMN37608909-rid19563513.denovo.17, whole genome shotgun sequence	68676..68817		enterobacteriales	IncI2(Delta)	100	316 / 316	ABNEWP010000019.1 Salmonella enterica strain PNUSAS387686 SAMN37608909-rid19563513.denovo.19, whole genome shotgun sequence	26503..26818																				avrA	ABNEWP010000009.1	140133..141002	99.195	870	0						
GCA_032262565.1_PDT001909025.1_genomic.fna	Salmonella_enterica	0.5207	228.181 KB	8	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNEWR010000001.1 Salmonella enterica strain PNUSAS387697 SAMN37608912-rid19563503.denovo.01, whole genome shotgun sequence	348234..348671	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNEWR010000064.1 Salmonella enterica strain PNUSAS387697 SAMN37608912-rid19563503.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNEWR010000017.1	61932..62801	99.54	870	0						
GCA_032262645.1_PDT001909026.1_genomic.fna	Salmonella_enterica	0.5197	385.584 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNEWQ010000001.1 Salmonella enterica strain PNUSAS387696 SAMN37608910-rid19563053.denovo.01, whole genome shotgun sequence	300510..300947	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNEWQ010000029.1 Salmonella enterica strain PNUSAS387696 SAMN37608910-rid19563053.guided.16, whole genome shotgun sequence	15892..16329	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032262805.1_PDT001909005.1_genomic.fna	Salmonella_enterica	0.5194	329.679 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNEXC010000001.1 Salmonella enterica strain PNUSAS387623 SAMN37608561-rid19563353.denovo.01, whole genome shotgun sequence	486124..486561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNEXC010000037.1 Salmonella enterica strain PNUSAS387623 SAMN37608561-rid19563353.guided.31, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNEXC010000003.1 Salmonella enterica strain PNUSAS387623 SAMN37608561-rid19563353.denovo.03, whole genome shotgun sequence	389034..389456	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNEXC010000038.1 Salmonella enterica strain PNUSAS387623 SAMN37608561-rid19563353.guided.32, whole genome shotgun sequence	6693..7115	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNEXC010000002.1	122292..123161	99.195	870	0						
GCA_032262965.1_PDT001908990.1_genomic.fna	Salmonella_enterica	0.5214	406.376 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	3	aac(6')-Iaa,aac(6')-Iaa,floR,floR,tet(A),tet(A)	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNEXK010000001.1 Salmonella enterica strain PNUSAS387624 SAMN37608562-rid19563263.denovo.01, whole genome shotgun sequence	821203..821640	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNEXK010000029.1 Salmonella enterica strain PNUSAS387624 SAMN37608562-rid19563263.guided.27, whole genome shotgun sequence	312..749	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	ABNEXK010000019.1 Salmonella enterica strain PNUSAS387624 SAMN37608562-rid19563263.denovo.19, whole genome shotgun sequence	7953..9166	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNEXK010000027.1 Salmonella enterica strain PNUSAS387624 SAMN37608562-rid19563263.guided.23, whole genome shotgun sequence	1631..2844	Chloramphenicol, Florfenicol	AF118107	tet(A)	99.92	1275/1275	ABNEXK010000019.1 Salmonella enterica strain PNUSAS387624 SAMN37608562-rid19563263.denovo.19, whole genome shotgun sequence	6078..7352	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1275/1275	ABNEXK010000027.1 Salmonella enterica strain PNUSAS387624 SAMN37608562-rid19563263.guided.23, whole genome shotgun sequence	3445..4719	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNEXK010000017.1 Salmonella enterica strain PNUSAS387624 SAMN37608562-rid19563263.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNEXK010000021.1 Salmonella enterica strain PNUSAS387624 SAMN37608562-rid19563263.denovo.22, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.4	374 / 374	ABNEXK010000020.1 Salmonella enterica strain PNUSAS387624 SAMN37608562-rid19563263.denovo.20, whole genome shotgun sequence	5743..6116																																									avrA	ABNEXK010000002.1	553072..553941	99.54	870	0						
GCA_032262985.1_PDT001908993.1_genomic.fna	Salmonella_enterica	0.5211	191.941 KB	9	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNEXL010000001.1 Salmonella enterica strain PNUSAS387620 SAMN37608560-rid19563283.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNEXL010000049.1 Salmonella enterica strain PNUSAS387620 SAMN37608560-rid19563283.guided.36, whole genome shotgun sequence	9457..9894	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNEXL010000025.1 Salmonella enterica strain PNUSAS387620 SAMN37608560-rid19563283.denovo.25, whole genome shotgun sequence	2550..3083																																																						avrA	ABNEXL010000009.1	154115..154984	99.425	870	0						
GCA_032263045.1_PDT001908987.1_genomic.fna	Salmonella_enterica	0.5203	197.767 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNEXN010000010.1 Salmonella enterica strain PNUSAS387621 SAMN37608558-rid19563243.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNEXN010000058.1 Salmonella enterica strain PNUSAS387621 SAMN37608558-rid19563243.guided.46, whole genome shotgun sequence	4028..4462	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																																						
GCA_032263085.1_PDT001908983.1_genomic.fna	Salmonella_enterica	0.5223	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNEXP010000002.1 Salmonella enterica strain PNUSAS387622 SAMN37608564-rid19563223.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNEXP010000044.1 Salmonella enterica strain PNUSAS387622 SAMN37608564-rid19563223.guided.31, whole genome shotgun sequence	9039..9476	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNEXP010000032.1 Salmonella enterica strain PNUSAS387622 SAMN37608564-rid19563223.denovo.34, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNEXP010000033.1 Salmonella enterica strain PNUSAS387622 SAMN37608564-rid19563223.denovo.35, whole genome shotgun sequence	10075..10336																																																avrA	ABNEXP010000001.1	446736..447604	100	869	0						
GCA_032263105.1_PDT001908981.1_genomic.fna	Salmonella_enterica	0.5218	412.288 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNEXT010000001.1 Salmonella enterica strain PNUSAS387626 SAMN37608563-rid19562913.denovo.01, whole genome shotgun sequence	683879..684316	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNEXT010000021.1 Salmonella enterica strain PNUSAS387626 SAMN37608563-rid19562913.guided.14, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNEXT010000002.1	563804..564673	99.77	870	0						
GCA_032263145.1_PDT001908975.1_genomic.fna	Salmonella_enterica	0.5212	221.606 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNEXU010000001.1 Salmonella enterica strain PNUSAS387625 SAMN37608559-rid19563163.denovo.01, whole genome shotgun sequence	458968..459405	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNEXU010000042.1 Salmonella enterica strain PNUSAS387625 SAMN37608559-rid19563163.guided.33, whole genome shotgun sequence	16605..17042	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNEXU010000006.1	174926..175795	99.885	870	0						
GCA_032263345.1_PDT001908950.1_genomic.fna	Salmonella_enterica	0.5213	400.817 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNEYG010000001.1 Salmonella enterica strain PNUSAS382538 SAMN37607964-rid19562693.denovo.01, whole genome shotgun sequence	482336..482773	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNEYG010000036.1 Salmonella enterica strain PNUSAS382538 SAMN37607964-rid19562693.guided.24, whole genome shotgun sequence	12798..13235	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNEYG010000016.1 Salmonella enterica strain PNUSAS382538 SAMN37607964-rid19562693.denovo.16, whole genome shotgun sequence	6199..6732																																																						avrA	ABNEYG010000002.1	518359..519228	99.77	870	0						
GCA_032263365.1_PDT001908953.1_genomic.fna	Salmonella_enterica	0.5213	353.084 KB	5	aroC_22,dnaN_104,hemD_25,hisD_113,purE_12,sucA_83,thrA_4	308	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_25	hisD	100	100	hisD_113	purE	100	100	purE_12	sucA	100	100	sucA_83	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNEYE010000001.1 Salmonella enterica strain PNUSAS384071 SAMN37607970-rid19562713.denovo.01, whole genome shotgun sequence	600754..601191	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNEYE010000042.1 Salmonella enterica strain PNUSAS384071 SAMN37607970-rid19562713.guided.09, whole genome shotgun sequence	42399..42836	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNEYE010000021.1 Salmonella enterica strain PNUSAS384071 SAMN37607970-rid19562713.denovo.23, whole genome shotgun sequence	17595..17736																																																						avrA	ABNEYE010000002.1	123014..123883	99.655	870	0						
GCA_032263385.1_PDT001908948.1_genomic.fna	Salmonella_enterica	0.5208	442.529 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNEYI010000001.1 Salmonella enterica strain PNUSAS382537 SAMN37607966-rid19562673.denovo.01, whole genome shotgun sequence	477465..477902	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNEYI010000034.1 Salmonella enterica strain PNUSAS382537 SAMN37607966-rid19562673.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNEYI010000016.1 Salmonella enterica strain PNUSAS382537 SAMN37607966-rid19562673.denovo.17, whole genome shotgun sequence	2465..2998																																																						avrA	ABNEYI010000014.1	93870..94740	99.196	871	0						
GCA_032263445.1_PDT001908939.1_genomic.fna	Salmonella_enterica	0.5211	297.189 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNEYJ010000001.1 Salmonella enterica strain PNUSAS384069 SAMN37607916-rid19562593.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNEYJ010000031.1 Salmonella enterica strain PNUSAS384069 SAMN37607916-rid19562593.guided.17, whole genome shotgun sequence	43923..44360	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNEYJ010000016.1 Salmonella enterica strain PNUSAS384069 SAMN37607916-rid19562593.denovo.18, whole genome shotgun sequence	40524..41166	enterobacteriales	IncFII(S)	100	262 / 262	ABNEYJ010000019.1 Salmonella enterica strain PNUSAS384069 SAMN37607916-rid19562593.denovo.22, whole genome shotgun sequence	3425..3686																																																avrA	ABNEYJ010000007.1	174754..175623	99.54	870	0						
GCA_032263465.1_PDT001908952.1_genomic.fna	Salmonella_enterica	0.5201	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul2,sul1,dfrA7,dfrA7	1	gyrA_p.D87N	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNEYF010000010.1 Salmonella enterica strain PNUSAS382536 SAMN37607919-rid19562863.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNEYF010000046.1 Salmonella enterica strain PNUSAS382536 SAMN37607919-rid19562863.denovo.51, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNEYF010000046.1 Salmonella enterica strain PNUSAS382536 SAMN37607919-rid19562863.denovo.51, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	ABNEYF010000063.1 Salmonella enterica strain PNUSAS382536 SAMN37607919-rid19562863.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNEYF010000067.1 Salmonella enterica strain PNUSAS382536 SAMN37607919-rid19562863.guided.50, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNEYF010000067.1 Salmonella enterica strain PNUSAS382536 SAMN37607919-rid19562863.guided.50, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNEYF010000051.1 Salmonella enterica strain PNUSAS382536 SAMN37607919-rid19562863.denovo.58, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNEYF010000069.1 Salmonella enterica strain PNUSAS382536 SAMN37607919-rid19562863.guided.57, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	ABNEYF010000040.1 Salmonella enterica strain PNUSAS382536 SAMN37607919-rid19562863.denovo.43, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	ABNEYF010000066.1 Salmonella enterica strain PNUSAS382536 SAMN37607919-rid19562863.guided.49, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	ABNEYF010000040.1 Salmonella enterica strain PNUSAS382536 SAMN37607919-rid19562863.denovo.43, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	ABNEYF010000046.1 Salmonella enterica strain PNUSAS382536 SAMN37607919-rid19562863.denovo.51, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNEYF010000067.1 Salmonella enterica strain PNUSAS382536 SAMN37607919-rid19562863.guided.50, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABNEYF010000068.1 Salmonella enterica strain PNUSAS382536 SAMN37607919-rid19562863.guided.54, whole genome shotgun sequence	2026..2865	Sulfamethoxazole	U12338	dfrA7	100	474/474	ABNEYF010000040.1 Salmonella enterica strain PNUSAS382536 SAMN37607919-rid19562863.denovo.43, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	ABNEYF010000068.1 Salmonella enterica strain PNUSAS382536 SAMN37607919-rid19562863.guided.54, whole genome shotgun sequence	982..1455	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032263485.1_PDT001908938.1_genomic.fna	Salmonella_enterica	0.5213	183.821 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNEYK010000001.1 Salmonella enterica strain PNUSAS387619 SAMN37608005-rid19562583.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNEYK010000030.1 Salmonella enterica strain PNUSAS387619 SAMN37608005-rid19562583.denovo.31, whole genome shotgun sequence	1316..2107	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNEYK010000030.1 Salmonella enterica strain PNUSAS387619 SAMN37608005-rid19562583.denovo.31, whole genome shotgun sequence	1316..2107	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNEYK010000054.1 Salmonella enterica strain PNUSAS387619 SAMN37608005-rid19562583.guided.30, whole genome shotgun sequence	6865..7302	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNEYK010000055.1 Salmonella enterica strain PNUSAS387619 SAMN37608005-rid19562583.guided.32, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNEYK010000055.1 Salmonella enterica strain PNUSAS387619 SAMN37608005-rid19562583.guided.32, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNEYK010000030.1 Salmonella enterica strain PNUSAS387619 SAMN37608005-rid19562583.denovo.31, whole genome shotgun sequence	2612..3451	Sulfamethoxazole	U12338	sul1	100	840/840	ABNEYK010000055.1 Salmonella enterica strain PNUSAS387619 SAMN37608005-rid19562583.guided.32, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNEYK010000030.1 Salmonella enterica strain PNUSAS387619 SAMN37608005-rid19562583.denovo.31, whole genome shotgun sequence	15968..17167	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNEYK010000055.1 Salmonella enterica strain PNUSAS387619 SAMN37608005-rid19562583.guided.32, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNEYK010000035.1 Salmonella enterica strain PNUSAS387619 SAMN37608005-rid19562583.denovo.39, whole genome shotgun sequence	9109..9668																																																						avrA	ABNEYK010000002.1	39430..40299	99.655	870	0						
GCA_032263505.1_PDT001908937.1_genomic.fna	Salmonella_enterica	0.5212	412.194 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNEYL010000001.1 Salmonella enterica strain PNUSAS384066 SAMN37607914-rid19562573.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNEYL010000024.1 Salmonella enterica strain PNUSAS384066 SAMN37607914-rid19562573.guided.18, whole genome shotgun sequence	12429..12866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNEYL010000017.1 Salmonella enterica strain PNUSAS384066 SAMN37607914-rid19562573.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNEYL010000019.1 Salmonella enterica strain PNUSAS384066 SAMN37607914-rid19562573.denovo.21, whole genome shotgun sequence	3374..3635																																																avrA	ABNEYL010000002.1	553428..554297	99.54	870	0						
GCA_032263525.1_PDT001908936.1_genomic.fna	Salmonella_enterica	0.5207	129.795 KB	12	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_150,thrA_22	464	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_150	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNEYN010000014.1 Salmonella enterica strain PNUSAS384067 SAMN37607917-rid19562563.denovo.14, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNEYN010000073.1 Salmonella enterica strain PNUSAS384067 SAMN37607917-rid19562563.guided.35, whole genome shotgun sequence	44304..44741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNEYN010000047.1 Salmonella enterica strain PNUSAS384067 SAMN37607917-rid19562563.denovo.49, whole genome shotgun sequence	3334..3976	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNEYN010000024.1 Salmonella enterica strain PNUSAS384067 SAMN37607917-rid19562563.denovo.24, whole genome shotgun sequence	19769..19910																																																											
GCA_032263925.1_PDT001908914.1_genomic.fna	Salmonella_enterica	0.522	280.312 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNEZG010000001.1 Salmonella enterica strain PNUSAS384075 SAMN37607969-rid19562383.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNEZG010000042.1 Salmonella enterica strain PNUSAS384075 SAMN37607969-rid19562383.guided.32, whole genome shotgun sequence	8682..9119	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNEZG010000019.1 Salmonella enterica strain PNUSAS384075 SAMN37607969-rid19562383.denovo.19, whole genome shotgun sequence	44766..45408	enterobacteriales	IncFII(S)	100	262 / 262	ABNEZG010000019.1 Salmonella enterica strain PNUSAS384075 SAMN37607969-rid19562383.denovo.19, whole genome shotgun sequence	29420..29681																																																avrA	ABNEZG010000002.1	209342..210211	99.885	870	0						
GCA_032263945.1_PDT001908913.1_genomic.fna	Salmonella_enterica	0.5215	304.614 KB	5	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNEZH010000001.1 Salmonella enterica strain PNUSAS384074 SAMN37607920-rid19562373.denovo.01, whole genome shotgun sequence	648313..648750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNEZH010000029.1 Salmonella enterica strain PNUSAS384074 SAMN37607920-rid19562373.guided.19, whole genome shotgun sequence	27884..28321	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNEZH010000005.1	39483..40352	99.425	870	0						
GCA_032263965.1_PDT001908912.1_genomic.fna	Salmonella_enterica	0.5212	470.173 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNEZI010000001.1 Salmonella enterica strain PNUSAS382534 SAMN37607918-rid19562803.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNEZI010000030.1 Salmonella enterica strain PNUSAS382534 SAMN37607918-rid19562803.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNEZI010000018.1 Salmonella enterica strain PNUSAS382534 SAMN37607918-rid19562803.denovo.20, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNEZI010000020.1 Salmonella enterica strain PNUSAS382534 SAMN37607918-rid19562803.denovo.23, whole genome shotgun sequence	3387..3648																																																avrA	ABNEZI010000008.1	174749..175618	99.54	870	0						
GCA_032263985.1_PDT001908911.1_genomic.fna	Salmonella_enterica	0.5207	309.604 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNEZJ010000001.1 Salmonella enterica strain PNUSAS384068 SAMN37607915-rid19562363.denovo.01, whole genome shotgun sequence	167933..168370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNEZJ010000040.1 Salmonella enterica strain PNUSAS384068 SAMN37607915-rid19562363.guided.24, whole genome shotgun sequence	605..1042	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNEZJ010000002.1	144905..145774	99.31	870	0						
GCA_032264005.1_PDT001908910.1_genomic.fna	Salmonella_enterica	0.5222	386.156 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNEZK010000001.1 Salmonella enterica strain PNUSAS382539 SAMN37607967-rid19562793.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNEZK010000059.1 Salmonella enterica strain PNUSAS382539 SAMN37607967-rid19562793.guided.15, whole genome shotgun sequence	10316..10753	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032264025.1_PDT001908909.1_genomic.fna	Salmonella_enterica	0.521	420.545 KB	5	aroC_60,dnaN_429,hemD_17,hisD_662,purE_13,sucA_16,thrA_4	2494	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_429	hemD	100	100	hemD_17	hisD	100	100	hisD_662	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNEZL010000001.1 Salmonella enterica strain PNUSAS387000 SAMN37607910-rid19562353.denovo.01, whole genome shotgun sequence	79996..80433	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNEZL010000033.1 Salmonella enterica strain PNUSAS387000 SAMN37607910-rid19562353.guided.22, whole genome shotgun sequence	9850..10287	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNEZL010000005.1	150899..151768	99.54	870	0						
GCA_032264045.1_PDT001908908.1_genomic.fna	Salmonella_enterica	0.5209	611.2 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNEZM010000001.1 Salmonella enterica strain PNUSAS384070 SAMN37607968-rid19562343.denovo.01, whole genome shotgun sequence	136608..137045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNEZM010000021.1 Salmonella enterica strain PNUSAS384070 SAMN37607968-rid19562343.guided.13, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNEZM010000002.1	544173..545041	99.425	870	0						
GCA_032264065.1_PDT001908907.1_genomic.fna	Salmonella_enterica	0.5214	182.328 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNEZN010000006.1 Salmonella enterica strain PNUSAS384072 SAMN37607965-rid19562333.denovo.06, whole genome shotgun sequence	56448..56885	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNEZN010000046.1 Salmonella enterica strain PNUSAS384072 SAMN37607965-rid19562333.guided.34, whole genome shotgun sequence	26712..27149	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNEZN010000035.1 Salmonella enterica strain PNUSAS384072 SAMN37607965-rid19562333.denovo.36, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNEZN010000037.1 Salmonella enterica strain PNUSAS384072 SAMN37607965-rid19562333.denovo.40, whole genome shotgun sequence	3413..3674																																																avrA	ABNEZN010000001.1	553046..553915	99.54	870	0						
GCA_032264085.1_PDT001908906.1_genomic.fna	Salmonella_enterica	0.5219	223.105 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNEZO010000001.1 Salmonella enterica strain PNUSAS382535 SAMN37607911-rid19562323.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNEZO010000051.1 Salmonella enterica strain PNUSAS382535 SAMN37607911-rid19562323.guided.28, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNEZO010000036.1 Salmonella enterica strain PNUSAS382535 SAMN37607911-rid19562323.denovo.39, whole genome shotgun sequence	816..967	enterobacteriales	IncFIB(S)	100	643 / 643	ABNEZO010000025.1 Salmonella enterica strain PNUSAS382535 SAMN37607911-rid19562323.denovo.25, whole genome shotgun sequence	44728..45370		enterobacteriales	IncFII(S)	100	262 / 262	ABNEZO010000025.1 Salmonella enterica strain PNUSAS382535 SAMN37607911-rid19562323.denovo.25, whole genome shotgun sequence	29382..29643																																									avrA	ABNEZO010000006.1	98448..99316	100	869	0						
GCA_032264105.1_PDT001908904.1_genomic.fna	Salmonella_enterica	0.5224	373.963 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNEZQ010000001.1 Salmonella enterica strain PNUSAS387001 SAMN37607909-rid19562303.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNEZQ010000039.1 Salmonella enterica strain PNUSAS387001 SAMN37607909-rid19562303.guided.23, whole genome shotgun sequence	1789..2226	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNEZQ010000024.1 Salmonella enterica strain PNUSAS387001 SAMN37607909-rid19562303.denovo.26, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNEZQ010000028.1 Salmonella enterica strain PNUSAS387001 SAMN37607909-rid19562303.denovo.31, whole genome shotgun sequence	2528..2639																																																avrA	ABNEZQ010000002.1	406073..406941	99.425	870	0						
GCA_032264125.1_PDT001908905.1_genomic.fna	Salmonella_enterica	0.5213	321.569 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNEZP010000001.1 Salmonella enterica strain PNUSAS387003 SAMN37607908-rid19562313.denovo.01, whole genome shotgun sequence	651806..652243	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNEZP010000035.1 Salmonella enterica strain PNUSAS387003 SAMN37607908-rid19562313.guided.29, whole genome shotgun sequence	5156..5593	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNEZP010000025.1 Salmonella enterica strain PNUSAS387003 SAMN37607908-rid19562313.denovo.26, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNEZP010000027.1 Salmonella enterica strain PNUSAS387003 SAMN37607908-rid19562313.denovo.28, whole genome shotgun sequence	3424..3685																																																avrA	ABNEZP010000002.1	553636..554505	99.54	870	0						
GCA_032264145.1_PDT001908903.1_genomic.fna	Salmonella_enterica	0.5213	334.671 KB	6	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNEZR010000001.1 Salmonella enterica strain PNUSAS382540 SAMN37607912-rid19562293.denovo.01, whole genome shotgun sequence	177159..177596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNEZR010000034.1 Salmonella enterica strain PNUSAS382540 SAMN37607912-rid19562293.guided.21, whole genome shotgun sequence	2480..2917	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNEZR010000007.1	148153..149022	99.77	870	0						
GCA_032264185.1_PDT001908899.1_genomic.fna	Salmonella_enterica	0.5219	422.015 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNEZV010000001.1 Salmonella enterica strain PNUSAS387580 SAMN37607787-rid19562263.denovo.01, whole genome shotgun sequence	407341..407778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNEZV010000030.1 Salmonella enterica strain PNUSAS387580 SAMN37607787-rid19562263.guided.22, whole genome shotgun sequence	9924..10361	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNEZV010000009.1	150710..151578	99.195	870	0						
GCA_032264205.1_PDT001908902.1_genomic.fna	Salmonella_enterica	0.5211	446.239 KB	5	aroC_13,dnaN_80,hemD_25,hisD_649,purE_40,sucA_58,thrA_4	2440	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	ColRNAI,IncFII(Yp)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_649	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_4	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNEZS010000008.1 Salmonella enterica strain PNUSAS384065 SAMN37607913-rid19562283.denovo.08, whole genome shotgun sequence	149279..149716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNEZS010000036.1 Salmonella enterica strain PNUSAS384065 SAMN37607913-rid19562283.guided.25, whole genome shotgun sequence	8005..8442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNEZS010000027.1 Salmonella enterica strain PNUSAS384065 SAMN37607913-rid19562283.denovo.30, whole genome shotgun sequence	1303..1433	enterobacteriales	IncFII(Yp)	92.61	230 / 230	ABNEZS010000016.1 Salmonella enterica strain PNUSAS384065 SAMN37607913-rid19562283.denovo.16, whole genome shotgun sequence	51921..52149																																																											
GCA_032264245.1_PDT001908898.1_genomic.fna	Salmonella_enterica	0.5214	284.072 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNEZW010000002.1 Salmonella enterica strain PNUSAS387585 SAMN37607793-rid19562253.denovo.02, whole genome shotgun sequence	176095..176532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNEZW010000037.1 Salmonella enterica strain PNUSAS387585 SAMN37607793-rid19562253.guided.33, whole genome shotgun sequence	2819..3256	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNEZW010000024.1 Salmonella enterica strain PNUSAS387585 SAMN37607793-rid19562253.denovo.24, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNEZW010000026.1 Salmonella enterica strain PNUSAS387585 SAMN37607793-rid19562253.denovo.26, whole genome shotgun sequence	3365..3626																																																avrA	ABNEZW010000001.1	553636..554505	99.54	870	0						
GCA_032264265.1_PDT001908897.1_genomic.fna	Salmonella_enterica	0.5212	257.842 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNEZX010000001.1 Salmonella enterica strain PNUSAS387582 SAMN37607791-rid19562243.denovo.01, whole genome shotgun sequence	68378..68815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNEZX010000056.1 Salmonella enterica strain PNUSAS387582 SAMN37607791-rid19562243.guided.34, whole genome shotgun sequence	8022..8459	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNEZX010000004.1	174651..175519	100	869	0						
GCA_032264325.1_PDT001908894.1_genomic.fna	Salmonella_enterica	0.5215	304.38 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFAA010000001.1 Salmonella enterica strain PNUSAS387589 SAMN37607789-rid19562213.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFAA010000029.1 Salmonella enterica strain PNUSAS387589 SAMN37607789-rid19562213.guided.22, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFAA010000016.1 Salmonella enterica strain PNUSAS387589 SAMN37607789-rid19562213.denovo.16, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNFAA010000020.1 Salmonella enterica strain PNUSAS387589 SAMN37607789-rid19562213.denovo.23, whole genome shotgun sequence	3391..3652																																																avrA	ABNFAA010000002.1	553636..554505	99.54	870	0						
GCA_032264365.1_PDT001908893.1_genomic.fna	Salmonella_enterica	0.5218	277.865 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_110,sucA_9,thrA_2	302	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_110	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFAB010000001.1 Salmonella enterica strain PNUSAS387588 SAMN37607790-rid19562203.denovo.01, whole genome shotgun sequence	207030..207467	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFAB010000053.1 Salmonella enterica strain PNUSAS387588 SAMN37607790-rid19562203.guided.33, whole genome shotgun sequence	20567..21004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNFAB010000023.1 Salmonella enterica strain PNUSAS387588 SAMN37607790-rid19562203.denovo.23, whole genome shotgun sequence	44705..45347	enterobacteriales	IncFII(S)	100	262 / 262	ABNFAB010000023.1 Salmonella enterica strain PNUSAS387588 SAMN37607790-rid19562203.denovo.23, whole genome shotgun sequence	29359..29620																																																avrA	ABNFAB010000003.1	209026..209895	99.885	870	0						
GCA_032264405.1_PDT001908890.1_genomic.fna	Salmonella_enterica	0.5214	682.666 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNFAD010000001.1 Salmonella enterica strain PNUSAS387586 SAMN37607788-rid19562773.denovo.01, whole genome shotgun sequence	486956..487393	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNFAD010000020.1 Salmonella enterica strain PNUSAS387586 SAMN37607788-rid19562773.guided.13, whole genome shotgun sequence	22572..23009	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFAD010000002.1	544607..545475	99.425	870	0						
GCA_032264485.1_PDT001908884.1_genomic.fna	Salmonella_enterica	0.5212	243.872 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFAJ010000001.1 Salmonella enterica strain PNUSAS387587 SAMN37607792-rid19562133.denovo.01, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFAJ010000039.1 Salmonella enterica strain PNUSAS387587 SAMN37607792-rid19562133.guided.22, whole genome shotgun sequence	8806..9243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFAJ010000006.1	174651..175519	100	869	0						
GCA_032264545.1_PDT001908882.1_genomic.fna	Salmonella_enterica	0.5213	257.843 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFAL010000001.1 Salmonella enterica strain PNUSAS387584 SAMN37607786-rid19562113.denovo.01, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFAL010000047.1 Salmonella enterica strain PNUSAS387584 SAMN37607786-rid19562113.guided.41, whole genome shotgun sequence	865..1302	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFAL010000002.1	452675..453543	100	869	0						
GCA_032264565.1_PDT001908881.1_genomic.fna	Salmonella_enterica	0.521	278.183 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFAM010000002.1 Salmonella enterica strain PNUSAS387579 SAMN37607785-rid19562103.denovo.02, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFAM010000060.1 Salmonella enterica strain PNUSAS387579 SAMN37607785-rid19562103.guided.36, whole genome shotgun sequence	5085..5522	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFAM010000001.1	452675..453543	100	869	0						
GCA_032264585.1_PDT001908880.1_genomic.fna	Salmonella_enterica	0.521	727.277 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNFAN010000001.1 Salmonella enterica strain PNUSAS387583 SAMN37607784-rid19562093.denovo.01, whole genome shotgun sequence	510589..511026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNFAN010000019.1 Salmonella enterica strain PNUSAS387583 SAMN37607784-rid19562093.guided.16, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFAN010000003.1	544607..545475	99.425	870	0						
GCA_032264665.1_PDT001908873.1_genomic.fna	Salmonella_enterica	0.5214	477.442 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFAR010000001.1 Salmonella enterica strain PNUSAS387540 SAMN37607530-rid19562033.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFAR010000038.1 Salmonella enterica strain PNUSAS387540 SAMN37607530-rid19562033.guided.18, whole genome shotgun sequence	15754..16191	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFAR010000018.1 Salmonella enterica strain PNUSAS387540 SAMN37607530-rid19562033.denovo.19, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNFAR010000022.1 Salmonella enterica strain PNUSAS387540 SAMN37607530-rid19562033.denovo.25, whole genome shotgun sequence	3327..3588																																																avrA	ABNFAR010000002.1	553312..554181	99.54	870	0						
GCA_032264725.1_PDT001908866.1_genomic.fna	Salmonella_enterica	0.5213	283.999 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFAX010000001.1 Salmonella enterica strain PNUSAS387539 SAMN37607529-rid19561963.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFAX010000039.1 Salmonella enterica strain PNUSAS387539 SAMN37607529-rid19561963.guided.21, whole genome shotgun sequence	15677..16114	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFAX010000021.1 Salmonella enterica strain PNUSAS387539 SAMN37607529-rid19561963.denovo.23, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNFAX010000025.1 Salmonella enterica strain PNUSAS387539 SAMN37607529-rid19561963.denovo.28, whole genome shotgun sequence	3094..3355																																																avrA	ABNFAX010000002.1	553076..553945	99.54	870	0						
GCA_032267745.1_PDT001709076.1_genomic.fna	Salmonella_enterica	0.5185	223.636 KB	8	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	4	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFBC010000001.1 Salmonella enterica strain ADRDL-4518 SAMN34405660-rid17836723.denovo.01, whole genome shotgun sequence	91449..91886	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFBC010000062.1 Salmonella enterica strain ADRDL-4518 SAMN34405660-rid17836723.guided.29, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNFBC010000011.1 Salmonella enterica strain ADRDL-4518 SAMN34405660-rid17836723.denovo.11, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNFBC010000064.1 Salmonella enterica strain ADRDL-4518 SAMN34405660-rid17836723.guided.39, whole genome shotgun sequence	4654..5076	Fosfomycin	LAPJ01000014	sul2	100	816/816	ABNFBC010000035.1 Salmonella enterica strain ADRDL-4518 SAMN34405660-rid17836723.denovo.38, whole genome shotgun sequence	2648..3463	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFBC010000063.1 Salmonella enterica strain ADRDL-4518 SAMN34405660-rid17836723.guided.36, whole genome shotgun sequence	12912..13727	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNFBC010000036.1 Salmonella enterica strain ADRDL-4518 SAMN34405660-rid17836723.denovo.42, whole genome shotgun sequence	1203..2408	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNFBC010000066.1 Salmonella enterica strain ADRDL-4518 SAMN34405660-rid17836723.guided.41, whole genome shotgun sequence	4114..5319	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFBC010000002.1	64444..65313	99.195	870	0						
GCA_032267765.1_PDT001709071.1_genomic.fna	Salmonella_enterica	0.5214	501.16 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaCTX-M-14,blaTEM-1A,blaCTX-M-14,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	2	IncI1-I(Alpha),IncI1-I(Alpha),IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNFBD010000001.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.denovo.01, whole genome shotgun sequence	1164226..1164663	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFBD010000019.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.denovo.23, whole genome shotgun sequence	548..1384	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFBD010000019.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.denovo.23, whole genome shotgun sequence	1384..2187	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	ABNFBD010000034.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.guided.15, whole genome shotgun sequence	31736..32173	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFBD010000038.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.guided.24, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNFBD010000038.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.guided.24, whole genome shotgun sequence	5879..6682	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNFBD010000039.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.guided.25, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFBD010000039.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.guided.25, whole genome shotgun sequence	5879..6682	Streptomycin	AF321551	blaCTX-M-14	100	876/876	ABNFBD010000016.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.denovo.18, whole genome shotgun sequence	103..978	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AF252622	blaTEM-1A	100	861/861	ABNFBD010000019.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.denovo.23, whole genome shotgun sequence	3225..4085	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaCTX-M-14	100	876/876	ABNFBD010000037.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.guided.22, whole genome shotgun sequence	13252..14127	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AF252622	blaTEM-1A	100	861/861	ABNFBD010000038.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.guided.24, whole genome shotgun sequence	3981..4841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNFBD010000039.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.guided.25, whole genome shotgun sequence	3981..4841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	ABNFBD010000021.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.denovo.27, whole genome shotgun sequence	618..1831	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFBD010000040.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.guided.30, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNFBD010000019.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.denovo.23, whole genome shotgun sequence	2248..3063	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFBD010000038.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.guided.24, whole genome shotgun sequence	5003..5818	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFBD010000039.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.guided.25, whole genome shotgun sequence	5003..5818	Sulfamethoxazole	AY034138	tet(A)	100	1226/1275	ABNFBD010000019.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.denovo.23, whole genome shotgun sequence	8738..9963	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	ABNFBD010000041.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.guided.32, whole genome shotgun sequence	788..1987	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABNFBD010000042.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.guided.33, whole genome shotgun sequence	713..1987	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNFBD010000016.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.denovo.18, whole genome shotgun sequence	10920..11061	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNFBD010000037.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.guided.22, whole genome shotgun sequence	3169..3310		enterobacteriales	IncR	100	251 / 251	ABNFBD010000018.1 Salmonella enterica strain ADRDL-4532 SAMN34405674-rid17836693.denovo.21, whole genome shotgun sequence	4414..4664																																									avrA	ABNFBD010000002.1	130389..131258	99.54	870	0						
GCA_032267785.1_PDT001709065.1_genomic.fna	Salmonella_enterica	0.5187	210.587 KB	10	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	4	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFBE010000006.1 Salmonella enterica strain ADRDL-4519 SAMN34405661-rid17836653.denovo.06, whole genome shotgun sequence	91449..91886	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFBE010000060.1 Salmonella enterica strain ADRDL-4519 SAMN34405661-rid17836653.guided.28, whole genome shotgun sequence	18092..18529	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNFBE010000014.1 Salmonella enterica strain ADRDL-4519 SAMN34405661-rid17836653.denovo.14, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNFBE010000064.1 Salmonella enterica strain ADRDL-4519 SAMN34405661-rid17836653.guided.40, whole genome shotgun sequence	6419..6841	Fosfomycin	LAPJ01000014	sul2	100	816/816	ABNFBE010000035.1 Salmonella enterica strain ADRDL-4519 SAMN34405661-rid17836653.denovo.38, whole genome shotgun sequence	2648..3463	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFBE010000062.1 Salmonella enterica strain ADRDL-4519 SAMN34405661-rid17836653.guided.36, whole genome shotgun sequence	12912..13727	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNFBE010000037.1 Salmonella enterica strain ADRDL-4519 SAMN34405661-rid17836653.denovo.43, whole genome shotgun sequence	1203..2408	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNFBE010000065.1 Salmonella enterica strain ADRDL-4519 SAMN34405661-rid17836653.guided.42, whole genome shotgun sequence	4114..5319	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFBE010000001.1	64444..65313	99.195	870	0						
GCA_032267805.1_PDT001709062.1_genomic.fna	Salmonella_enterica	0.5215	273.33 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFBF010000002.1 Salmonella enterica strain ADRDL-4540 SAMN34405682-rid17834893.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFBF010000046.1 Salmonella enterica strain ADRDL-4540 SAMN34405682-rid17834893.guided.27, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNFBF010000017.1 Salmonella enterica strain ADRDL-4540 SAMN34405682-rid17834893.denovo.17, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNFBF010000017.1 Salmonella enterica strain ADRDL-4540 SAMN34405682-rid17834893.denovo.17, whole genome shotgun sequence	30401..30662																																																avrA	ABNFBF010000003.1	209211..210079	100	869	0						
GCA_032267825.1_PDT001709051.1_genomic.fna	Salmonella_enterica	0.5212	508.038 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFBG010000001.1 Salmonella enterica strain ADRDL-4550 SAMN34405692-rid17836563.denovo.01, whole genome shotgun sequence	628579..629016	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFBG010000024.1 Salmonella enterica strain ADRDL-4550 SAMN34405692-rid17836563.guided.18, whole genome shotgun sequence	5232..5669	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNFBG010000013.1 Salmonella enterica strain ADRDL-4550 SAMN34405692-rid17836563.denovo.13, whole genome shotgun sequence	2740..3273																																																						avrA	ABNFBG010000008.1	150695..151565	99.196	871	0						
GCA_032267845.1_PDT001708985.1_genomic.fna	Salmonella_enterica	0.5209	75.864 KB	19	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFBJ010000005.1 Salmonella enterica strain PNUSAS345071 SAMN34416564-rid17834563.denovo.005, whole genome shotgun sequence	12734..13171	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNFBJ010000114.1 Salmonella enterica strain PNUSAS345071 SAMN34416564-rid17834563.guided.046, whole genome shotgun sequence	24981..25418	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNFBJ010000050.1 Salmonella enterica strain PNUSAS345071 SAMN34416564-rid17834563.denovo.052, whole genome shotgun sequence	14769..14910																																																						avrA	ABNFBJ010000019.1	39350..40220	99.656	871	0						
GCA_032267865.1_PDT001708997.1_genomic.fna	Salmonella_enterica	0.5216	714.718 KB	3	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNFBH010000001.1 Salmonella enterica strain ADRDL-4526 SAMN34405668-rid17834623.denovo.01, whole genome shotgun sequence	736161..736598	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNFBH010000028.1 Salmonella enterica strain ADRDL-4526 SAMN34405668-rid17834623.guided.15, whole genome shotgun sequence	18937..19374	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFBH010000002.1	575521..576389	99.655	869	0						
GCA_032267885.1_PDT001708977.1_genomic.fna	Salmonella_enterica	0.5206	162.889 KB	10	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNFBK010000003.1 Salmonella enterica strain PNUSAS345089 SAMN34417667-rid17834523.denovo.03, whole genome shotgun sequence	77557..77994	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNFBK010000078.1 Salmonella enterica strain PNUSAS345089 SAMN34417667-rid17834523.guided.35, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNFBK010000039.1 Salmonella enterica strain PNUSAS345089 SAMN34417667-rid17834523.denovo.40, whole genome shotgun sequence	11196..11838	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNFBK010000038.1 Salmonella enterica strain PNUSAS345089 SAMN34417667-rid17834523.denovo.39, whole genome shotgun sequence	21070..21662																																																avrA	ABNFBK010000016.1	60942..61810	99.425	870	0						
GCA_032267905.1_PDT001708984.1_genomic.fna	Salmonella_enterica	0.521	198.83 KB	9	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNFBI010000004.1 Salmonella enterica strain PNUSAS345099 SAMN34416484-rid17834553.denovo.04, whole genome shotgun sequence	175202..175639	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNFBI010000053.1 Salmonella enterica strain PNUSAS345099 SAMN34416484-rid17834553.guided.22, whole genome shotgun sequence	24612..25049	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFBI010000006.1	60946..61815	99.54	870	0						
GCA_032267925.1_PDT001708962.1_genomic.fna	Salmonella_enterica	0.5205	160.467 KB	9	aroC_41,dnaN_332,hemD_79,hisD_62,purE_28,sucA_14,thrA_96	1384	-:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_62	purE	100	100	purE_28	sucA	100	100	sucA_14	thrA	100	100	thrA_96	-	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNFBM010000008.1 Salmonella enterica strain PNUSAS344975 SAMN34417434-rid17834443.denovo.08, whole genome shotgun sequence	89169..89606	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNFBM010000070.1 Salmonella enterica strain PNUSAS344975 SAMN34417434-rid17834443.guided.34, whole genome shotgun sequence	29817..30254	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNFBM010000015.1 Salmonella enterica strain PNUSAS344975 SAMN34417434-rid17834443.denovo.15, whole genome shotgun sequence	104626..105268	enterobacteriales	IncFII(pCRY)	95.11	593 / 593	ABNFBM010000039.1 Salmonella enterica strain PNUSAS344975 SAMN34417434-rid17834443.denovo.41, whole genome shotgun sequence	18934..19526																																																avrA	ABNFBM010000010.1	60943..61812	99.54	870	0						
GCA_032267945.1_PDT001708955.1_genomic.fna	Salmonella_enterica	0.5208	160.219 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFBL010000011.1 Salmonella enterica strain PNUSAS344964 SAMN34417639-rid17834403.denovo.11, whole genome shotgun sequence	50997..51434	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFBL010000068.1 Salmonella enterica strain PNUSAS344964 SAMN34417639-rid17834403.guided.29, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFBL010000029.1 Salmonella enterica strain PNUSAS344964 SAMN34417639-rid17834403.denovo.30, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	ABNFBL010000054.1 Salmonella enterica strain PNUSAS344964 SAMN34417639-rid17834403.denovo.57, whole genome shotgun sequence	3413..3674		enterobacteriales	IncX1	98.93	374 / 374	ABNFBL010000048.1 Salmonella enterica strain PNUSAS344964 SAMN34417639-rid17834403.denovo.51, whole genome shotgun sequence	9598..9971																																									avrA	ABNFBL010000013.1	60945..61814	99.54	870	0						
GCA_032267965.1_PDT001708945.1_genomic.fna	Salmonella_enterica	0.5202	273.178 KB	6	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNFBN010000004.1 Salmonella enterica strain PNUSAS344963 SAMN34417637-rid17834363.denovo.04, whole genome shotgun sequence	254882..255319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNFBN010000036.1 Salmonella enterica strain PNUSAS344963 SAMN34417637-rid17834363.guided.22, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFBN010000009.1	61088..61956	99.425	870	0						
GCA_032267985.1_PDT001708808.1_genomic.fna	Salmonella_enterica	0.5213	191.426 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFBS010000001.1 Salmonella enterica strain PNUSAS344892 SAMN34417365-rid17833793.denovo.01, whole genome shotgun sequence	381672..382109	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFBS010000047.1 Salmonella enterica strain PNUSAS344892 SAMN34417365-rid17833793.guided.14, whole genome shotgun sequence	23573..24010	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFBS010000005.1	61077..61945	99.77	870	0						
GCA_032268005.1_PDT001708813.1_genomic.fna	Salmonella_enterica	0.5208	170.331 KB	12	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNFBQ010000005.1 Salmonella enterica strain PNUSAS344950 SAMN34417633-rid17833813.denovo.05, whole genome shotgun sequence	97485..97922	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNFBQ010000079.1 Salmonella enterica strain PNUSAS344950 SAMN34417633-rid17833813.guided.52, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNFBQ010000056.1 Salmonella enterica strain PNUSAS344950 SAMN34417633-rid17833813.denovo.59, whole genome shotgun sequence	4500..5142	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNFBQ010000048.1 Salmonella enterica strain PNUSAS344950 SAMN34417633-rid17833813.denovo.50, whole genome shotgun sequence	10978..11204																																																											
GCA_032268025.1_PDT001708810.1_genomic.fna	Salmonella_enterica	0.5204	134.849 KB	10	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFBR010000001.1 Salmonella enterica strain PNUSAS344951 SAMN34417422-rid17833803.denovo.01, whole genome shotgun sequence	384464..384901	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFBR010000072.1 Salmonella enterica strain PNUSAS344951 SAMN34417422-rid17833803.guided.08, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFBR010000024.1	39348..40218	99.196	871	0						
GCA_032268045.1_PDT001708825.1_genomic.fna	Salmonella_enterica	0.5213	215.581 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFBO010000008.1 Salmonella enterica strain PNUSAS344898 SAMN34417430-rid17833853.denovo.08, whole genome shotgun sequence	106359..106796	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFBO010000045.1 Salmonella enterica strain PNUSAS344898 SAMN34417430-rid17833853.guided.32, whole genome shotgun sequence	24370..24807	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFBO010000026.1 Salmonella enterica strain PNUSAS344898 SAMN34417430-rid17833853.denovo.26, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	ABNFBO010000034.1 Salmonella enterica strain PNUSAS344898 SAMN34417430-rid17833853.denovo.37, whole genome shotgun sequence	3402..3663																																																avrA	ABNFBO010000001.1	506385..507254	99.54	870	0						
GCA_032268065.1_PDT001708820.1_genomic.fna	Salmonella_enterica	0.5201	102.44 KB	14	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFBP010000002.1 Salmonella enterica strain PNUSAS344979 SAMN34417362-rid17833833.denovo.02, whole genome shotgun sequence	151065..151502	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFBP010000094.1 Salmonella enterica strain PNUSAS344979 SAMN34417362-rid17833833.guided.14, whole genome shotgun sequence	9267..9704	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNFBP010000026.1 Salmonella enterica strain PNUSAS344979 SAMN34417362-rid17833833.denovo.27, whole genome shotgun sequence	17980..18402	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNFBP010000095.1 Salmonella enterica strain PNUSAS344979 SAMN34417362-rid17833833.guided.55, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFBP010000015.1	60930..61799	99.195	870	0						
GCA_032268085.1_PDT001708803.1_genomic.fna	Salmonella_enterica	0.5207	160.887 KB	10	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	-:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	-	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:m,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFBT010000003.1 Salmonella enterica strain PNUSAS344961 SAMN34417641-rid17833773.denovo.03, whole genome shotgun sequence	149396..149833	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFBT010000049.1 Salmonella enterica strain PNUSAS344961 SAMN34417641-rid17833773.guided.28, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032268105.1_PDT001708800.1_genomic.fna	Salmonella_enterica	0.5212	209.484 KB	9	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	-:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	-	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:m,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFBU010000009.1 Salmonella enterica strain PNUSAS344967 SAMN34417635-rid17833763.denovo.09, whole genome shotgun sequence	93404..93841	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFBU010000050.1 Salmonella enterica strain PNUSAS344967 SAMN34417635-rid17833763.guided.31, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032268125.1_PDT001708798.1_genomic.fna	Salmonella_enterica	0.5201	203.577 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),pSL483	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFBV010000011.1 Salmonella enterica strain PNUSAS344894 SAMN34417431-rid17833753.denovo.11, whole genome shotgun sequence	65569..66006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFBV010000046.1 Salmonella enterica strain PNUSAS344894 SAMN34417431-rid17833753.guided.26, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFBV010000024.1 Salmonella enterica strain PNUSAS344894 SAMN34417431-rid17833753.denovo.25, whole genome shotgun sequence	40522..41164	enterobacteriales	IncFII(S)	100	262 / 262	ABNFBV010000036.1 Salmonella enterica strain PNUSAS344894 SAMN34417431-rid17833753.denovo.39, whole genome shotgun sequence	3413..3674		enterobacteriales	pSL483	99.9	995 / 995	ABNFBV010000027.1 Salmonella enterica strain PNUSAS344894 SAMN34417431-rid17833753.denovo.29, whole genome shotgun sequence	23337..24331																																									avrA	ABNFBV010000002.1	28834..29703	99.54	870	0						
GCA_032268145.1_PDT001708785.1_genomic.fna	Salmonella_enterica	0.5197	143.718 KB	10	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	-:f,g,s:-	5	aac(6')-Iaa,aadA7,aac(6')-Iaa,aadA7,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	-	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFBX010000001.1 Salmonella enterica strain PNUSAS344946 SAMN34417630-rid17833703.denovo.01, whole genome shotgun sequence	480198..480635	Amikacin, Tobramycin	NC_003197	aadA7	99	798/798	ABNFBX010000034.1 Salmonella enterica strain PNUSAS344946 SAMN34417630-rid17833703.denovo.35, whole genome shotgun sequence	24752..25549	Spectinomycin, Streptomycin	AF224733	aac(6')-Iaa	97.95	438/438	ABNFBX010000076.1 Salmonella enterica strain PNUSAS344946 SAMN34417630-rid17833703.guided.18, whole genome shotgun sequence	42508..42945	Amikacin, Tobramycin	NC_003197	aadA7	99	798/798	ABNFBX010000080.1 Salmonella enterica strain PNUSAS344946 SAMN34417630-rid17833703.guided.49, whole genome shotgun sequence	8133..8930	Spectinomycin, Streptomycin	AF224733	fosA7	97.16	423/423	ABNFBX010000026.1 Salmonella enterica strain PNUSAS344946 SAMN34417630-rid17833703.denovo.27, whole genome shotgun sequence	17987..18409	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNFBX010000078.1 Salmonella enterica strain PNUSAS344946 SAMN34417630-rid17833703.guided.45, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNFBX010000034.1 Salmonella enterica strain PNUSAS344946 SAMN34417630-rid17833703.denovo.35, whole genome shotgun sequence	26054..26893	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFBX010000080.1 Salmonella enterica strain PNUSAS344946 SAMN34417630-rid17833703.guided.49, whole genome shotgun sequence	9435..10274	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFBX010000029.1 Salmonella enterica strain PNUSAS344946 SAMN34417630-rid17833703.denovo.30, whole genome shotgun sequence	1828..3027	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFBX010000081.1 Salmonella enterica strain PNUSAS344946 SAMN34417630-rid17833703.guided.61, whole genome shotgun sequence	1849..3048	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFBX010000009.1	60930..61799	99.195	870	0						
GCA_032268165.1_PDT001708783.1_genomic.fna	Salmonella_enterica	0.521	129.824 KB	13	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFBW010000003.1 Salmonella enterica strain PNUSAS345088 SAMN34417666-rid17833693.denovo.03, whole genome shotgun sequence	145130..145567	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFBW010000071.1 Salmonella enterica strain PNUSAS345088 SAMN34417666-rid17833693.denovo.75, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNFBW010000071.1 Salmonella enterica strain PNUSAS345088 SAMN34417666-rid17833693.denovo.75, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNFBW010000092.1 Salmonella enterica strain PNUSAS345088 SAMN34417666-rid17833693.guided.14, whole genome shotgun sequence	13964..14401	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFBW010000096.1 Salmonella enterica strain PNUSAS345088 SAMN34417666-rid17833693.guided.77, whole genome shotgun sequence	2498..3334	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNFBW010000096.1 Salmonella enterica strain PNUSAS345088 SAMN34417666-rid17833693.guided.77, whole genome shotgun sequence	1695..2498	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNFBW010000080.1 Salmonella enterica strain PNUSAS345088 SAMN34417666-rid17833693.denovo.86, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNFBW010000097.1 Salmonella enterica strain PNUSAS345088 SAMN34417666-rid17833693.guided.84, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNFBW010000071.1 Salmonella enterica strain PNUSAS345088 SAMN34417666-rid17833693.denovo.75, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNFBW010000096.1 Salmonella enterica strain PNUSAS345088 SAMN34417666-rid17833693.guided.77, whole genome shotgun sequence	819..1634	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNFBW010000058.1 Salmonella enterica strain PNUSAS345088 SAMN34417666-rid17833693.denovo.61, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNFBW010000095.1 Salmonella enterica strain PNUSAS345088 SAMN34417666-rid17833693.guided.67, whole genome shotgun sequence	2353..3558	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNFBW010000005.1	39792..40661	99.885	870	0						
GCA_032268185.1_PDT001708768.1_genomic.fna	Salmonella_enterica	0.5215	136.544 KB	13	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNFBY010000004.1 Salmonella enterica strain PNUSAS345081 SAMN34416530-rid17833633.denovo.04, whole genome shotgun sequence	89191..89628	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNFBY010000069.1 Salmonella enterica strain PNUSAS345081 SAMN34416530-rid17833633.guided.60, whole genome shotgun sequence	156..593	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFBY010000009.1	60945..61814	99.54	870	0						
GCA_032268205.1_PDT001708754.1_genomic.fna	Salmonella_enterica	0.522	148.545 KB	10	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNFCA010000001.1 Salmonella enterica strain PNUSAS344901 SAMN34416450-rid17830213.denovo.01, whole genome shotgun sequence	111523..111960	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNFCA010000073.1 Salmonella enterica strain PNUSAS344901 SAMN34416450-rid17830213.guided.16, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFCA010000011.1	60943..61812	99.77	870	0						
GCA_032268225.1_PDT001708763.1_genomic.fna	Salmonella_enterica	0.5211	245.771 KB	7	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNFBZ010000002.1 Salmonella enterica strain PNUSAS345083 SAMN34416532-rid17833603.denovo.02, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNFBZ010000036.1 Salmonella enterica strain PNUSAS345083 SAMN34416532-rid17833603.guided.28, whole genome shotgun sequence	19544..19981	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFBZ010000001.1	548111..548980	99.54	870	0						
GCA_032268245.1_PDT001708749.1_genomic.fna	Salmonella_enterica	0.5219	93.253 KB	16	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNFCC010000001.1 Salmonella enterica strain PNUSAS345078 SAMN34416446-rid17830203.denovo.01, whole genome shotgun sequence	89204..89641	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNFCC010000091.1 Salmonella enterica strain PNUSAS345078 SAMN34416446-rid17830203.guided.37, whole genome shotgun sequence	36669..37106	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFCC010000014.1	60945..61814	99.54	870	0						
GCA_032268265.1_PDT001708753.1_genomic.fna	Salmonella_enterica	0.5211	123.157 KB	12	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNFCB010000004.1 Salmonella enterica strain PNUSAS345095 SAMN34416541-rid17833553.denovo.04, whole genome shotgun sequence	239428..239865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNFCB010000093.1 Salmonella enterica strain PNUSAS345095 SAMN34416541-rid17833553.guided.44, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNFCB010000066.1 Salmonella enterica strain PNUSAS345095 SAMN34416541-rid17833553.denovo.69, whole genome shotgun sequence	4504..5146	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNFCB010000044.1 Salmonella enterica strain PNUSAS345095 SAMN34416541-rid17833553.denovo.46, whole genome shotgun sequence	10978..11204																																																											
GCA_032268285.1_PDT001708747.1_genomic.fna	Salmonella_enterica	0.5192	238.366 KB	6	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	8	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA1,aadA2,blaTEM-1B,blaTEM-1B,cml,cml,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	2	Col(pHAD28),IncY	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNFCD010000004.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.denovo.04, whole genome shotgun sequence	157452..157889	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNFCD010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.denovo.33, whole genome shotgun sequence	3597..4388	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABNFCD010000033.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.denovo.38, whole genome shotgun sequence	1062..1853	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.03	438/438	ABNFCD010000063.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.guided.26, whole genome shotgun sequence	16444..16881	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNFCD010000064.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.guided.34, whole genome shotgun sequence	3297..4088	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABNFCD010000065.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.guided.37, whole genome shotgun sequence	3660..4451	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABNFCD010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.denovo.33, whole genome shotgun sequence	1333..2193	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNFCD010000064.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.guided.34, whole genome shotgun sequence	1033..1893	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	ABNFCD010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.denovo.33, whole genome shotgun sequence	2657..3578	Chloramphenicol	M22614	cml	96.66	929/909	ABNFCD010000064.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.guided.34, whole genome shotgun sequence	2357..3278	Chloramphenicol	M22614	sul3	100	792/792	ABNFCD010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.denovo.33, whole genome shotgun sequence	6070..6861	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNFCD010000064.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.guided.34, whole genome shotgun sequence	5770..6561	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABNFCD010000012.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.denovo.12, whole genome shotgun sequence	146319..147518	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNFCD010000066.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.guided.39, whole genome shotgun sequence	1125..2324	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABNFCD010000033.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.denovo.38, whole genome shotgun sequence	2261..2758	Trimethoprim	AM040708	dfrA12	100	498/498	ABNFCD010000065.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.guided.37, whole genome shotgun sequence	2755..3252	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFCD010000034.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.denovo.40, whole genome shotgun sequence	3134..3264	enterobacteriales	IncY	99.48	765 / 765	ABNFCD010000018.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-022 SAMN34415907-rid17833503.denovo.18, whole genome shotgun sequence	63696..64460																																																avrA	ABNFCD010000001.1	185005..185874	99.195	870	0						
GCA_032268305.1_PDT001708744.1_genomic.fna	Salmonella_enterica	0.5194	253.191 KB	6	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	8	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA2,aadA1,blaTEM-1B,blaTEM-1B,cml,cml,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNFCE010000006.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.denovo.06, whole genome shotgun sequence	157585..158022	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNFCE010000028.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.denovo.31, whole genome shotgun sequence	3597..4388	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABNFCE010000031.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.denovo.35, whole genome shotgun sequence	1165..1956	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.03	438/438	ABNFCE010000054.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.guided.16, whole genome shotgun sequence	16430..16867	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNFCE010000057.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.guided.34, whole genome shotgun sequence	3606..4397	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNFCE010000059.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.guided.38, whole genome shotgun sequence	3297..4088	Spectinomycin, Streptomycin	JQ414041	blaTEM-1B	100	861/861	ABNFCE010000028.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.denovo.31, whole genome shotgun sequence	1333..2193	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNFCE010000059.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.guided.38, whole genome shotgun sequence	1033..1893	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	ABNFCE010000028.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.denovo.31, whole genome shotgun sequence	2657..3578	Chloramphenicol	M22614	cml	96.66	929/909	ABNFCE010000059.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.guided.38, whole genome shotgun sequence	2357..3278	Chloramphenicol	M22614	sul3	100	792/792	ABNFCE010000028.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.denovo.31, whole genome shotgun sequence	6070..6861	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNFCE010000060.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.guided.43, whole genome shotgun sequence	2060..2851	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABNFCE010000011.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.denovo.11, whole genome shotgun sequence	146319..147518	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNFCE010000058.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.guided.37, whole genome shotgun sequence	1125..2324	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABNFCE010000031.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.denovo.35, whole genome shotgun sequence	2364..2861	Trimethoprim	AM040708	dfrA12	100	498/498	ABNFCE010000057.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.guided.34, whole genome shotgun sequence	2701..3198	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFCE010000034.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-058 SAMN34415918-rid17830193.denovo.40, whole genome shotgun sequence	3134..3264																																																						avrA	ABNFCE010000001.1	94434..95303	99.195	870	0						
GCA_032268325.1_PDT001708743.1_genomic.fna	Salmonella_enterica	0.5193	238.507 KB	6	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	8	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA1,aadA2,blaTEM-1B,blaTEM-1B,cml,cml,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNFCF010000004.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.denovo.04, whole genome shotgun sequence	217358..217795	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNFCF010000028.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.denovo.31, whole genome shotgun sequence	3597..4388	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABNFCF010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.denovo.35, whole genome shotgun sequence	1165..1956	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.03	438/438	ABNFCF010000054.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.guided.15, whole genome shotgun sequence	16430..16867	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNFCF010000057.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.guided.32, whole genome shotgun sequence	3297..4088	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABNFCF010000058.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.guided.34, whole genome shotgun sequence	3606..4397	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABNFCF010000028.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.denovo.31, whole genome shotgun sequence	1333..2193	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNFCF010000057.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.guided.32, whole genome shotgun sequence	1033..1893	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	ABNFCF010000028.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.denovo.31, whole genome shotgun sequence	2657..3578	Chloramphenicol	M22614	cml	96.66	929/909	ABNFCF010000057.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.guided.32, whole genome shotgun sequence	2357..3278	Chloramphenicol	M22614	sul3	100	792/792	ABNFCF010000028.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.denovo.31, whole genome shotgun sequence	6070..6861	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNFCF010000057.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.guided.32, whole genome shotgun sequence	5770..6561	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABNFCF010000005.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.denovo.05, whole genome shotgun sequence	282829..284028	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNFCF010000059.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.guided.36, whole genome shotgun sequence	1125..2324	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABNFCF010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.denovo.35, whole genome shotgun sequence	2364..2861	Trimethoprim	AM040708	dfrA12	100	498/498	ABNFCF010000058.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.guided.34, whole genome shotgun sequence	2701..3198	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFCF010000032.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-059 SAMN34415919-rid17833473.denovo.38, whole genome shotgun sequence	3134..3264																																																						avrA	ABNFCF010000002.1	94434..95303	99.195	870	0						
GCA_032268345.1_PDT001708735.1_genomic.fna	Salmonella_enterica	0.52	279.593 KB	8	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	6	aac(6')-Iaa,aadA1,aadA1,aadA2,aac(6')-Iaa,aadA1,aadA1,aadA2,blaTEM-1B,blaTEM-1B,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	3	Col(pHAD28),IncI1-I(Alpha),IncR	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNFCG010000001.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.denovo.01, whole genome shotgun sequence	157496..157933	Amikacin, Tobramycin	NC_003197	aadA1	99.87	792/792	ABNFCG010000036.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.denovo.39, whole genome shotgun sequence	2545..3336	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	ABNFCG010000036.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.denovo.39, whole genome shotgun sequence	2545..3336	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABNFCG010000042.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.denovo.47, whole genome shotgun sequence	680..1471	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.03	438/438	ABNFCG010000067.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.guided.25, whole genome shotgun sequence	16444..16881	Amikacin, Tobramycin	NC_003197	aadA1	99.87	792/792	ABNFCG010000069.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.guided.42, whole genome shotgun sequence	2334..3125	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	ABNFCG010000069.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.guided.42, whole genome shotgun sequence	2334..3125	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABNFCG010000070.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.guided.46, whole genome shotgun sequence	2660..3451	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABNFCG010000036.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.denovo.39, whole genome shotgun sequence	5375..6235	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNFCG010000072.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.guided.58, whole genome shotgun sequence	212..1072	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	ABNFCG010000043.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.denovo.49, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFCG010000071.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.guided.48, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABNFCG010000042.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.denovo.47, whole genome shotgun sequence	1879..2376	Trimethoprim	AM040708	dfrA12	100	498/498	ABNFCG010000070.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.guided.46, whole genome shotgun sequence	1755..2252	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFCG010000039.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.denovo.43, whole genome shotgun sequence	3134..3264	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNFCG010000029.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.denovo.32, whole genome shotgun sequence	6442..6583		enterobacteriales	IncR	100	251 / 251	ABNFCG010000034.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-077 SAMN34415926-rid17830173.denovo.37, whole genome shotgun sequence	8546..8796																																									avrA	ABNFCG010000015.1	39456..40325	99.195	870	0						
GCA_032268365.1_PDT001708725.1_genomic.fna	Salmonella_enterica	0.5202	261.554 KB	7	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64*,sucA_151,thrA_87	469*	7:f,g:-	8	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA1,aadA2,blaTEM-1B,blaTEM-1B,cml,cml,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	99.749373433584	100	purE_64*	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNFCH010000005.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.denovo.05, whole genome shotgun sequence	157596..158033	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNFCH010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.denovo.33, whole genome shotgun sequence	3676..4467	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABNFCH010000031.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.denovo.36, whole genome shotgun sequence	1165..1956	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.03	438/438	ABNFCH010000048.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.guided.27, whole genome shotgun sequence	16444..16881	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNFCH010000049.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.guided.34, whole genome shotgun sequence	3297..4088	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABNFCH010000050.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.guided.35, whole genome shotgun sequence	3660..4451	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABNFCH010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.denovo.33, whole genome shotgun sequence	1412..2272	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNFCH010000049.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.guided.34, whole genome shotgun sequence	1033..1893	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	ABNFCH010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.denovo.33, whole genome shotgun sequence	2736..3657	Chloramphenicol	M22614	cml	96.66	929/909	ABNFCH010000049.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.guided.34, whole genome shotgun sequence	2357..3278	Chloramphenicol	M22614	sul3	100	792/792	ABNFCH010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.denovo.33, whole genome shotgun sequence	6149..6940	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNFCH010000049.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.guided.34, whole genome shotgun sequence	5770..6561	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABNFCH010000016.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.denovo.16, whole genome shotgun sequence	99137..100336	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNFCH010000051.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.guided.37, whole genome shotgun sequence	1125..2324	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABNFCH010000031.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.denovo.36, whole genome shotgun sequence	2364..2861	Trimethoprim	AM040708	dfrA12	100	498/498	ABNFCH010000050.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.guided.35, whole genome shotgun sequence	2755..3252	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFCH010000034.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-040 SAMN34415913-rid17830133.denovo.40, whole genome shotgun sequence	1479..1609																																																						avrA	ABNFCH010000001.1	60951..61820	99.195	870	0						
GCA_032268385.1_PDT001708723.1_genomic.fna	Salmonella_enterica	0.5197	261.918 KB	6	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	8	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA1,aadA2,blaTEM-1B,blaTEM-1B,cml,cml,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNFCK010000004.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.denovo.04, whole genome shotgun sequence	69578..70015	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNFCK010000028.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.denovo.31, whole genome shotgun sequence	3597..4388	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABNFCK010000031.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.denovo.36, whole genome shotgun sequence	1164..1955	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.03	438/438	ABNFCK010000053.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.guided.23, whole genome shotgun sequence	9823..10260	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNFCK010000054.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.guided.32, whole genome shotgun sequence	3297..4088	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABNFCK010000055.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.guided.35, whole genome shotgun sequence	3661..4452	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABNFCK010000028.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.denovo.31, whole genome shotgun sequence	1333..2193	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNFCK010000054.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.guided.32, whole genome shotgun sequence	1033..1893	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	ABNFCK010000028.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.denovo.31, whole genome shotgun sequence	2657..3578	Chloramphenicol	M22614	cml	96.66	929/909	ABNFCK010000054.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.guided.32, whole genome shotgun sequence	2357..3278	Chloramphenicol	M22614	sul3	100	792/792	ABNFCK010000028.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.denovo.31, whole genome shotgun sequence	6070..6861	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNFCK010000054.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.guided.32, whole genome shotgun sequence	5770..6561	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABNFCK010000026.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.denovo.29, whole genome shotgun sequence	3536..4735	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNFCK010000056.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.guided.37, whole genome shotgun sequence	1125..2324	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABNFCK010000031.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.denovo.36, whole genome shotgun sequence	2363..2860	Trimethoprim	AM040708	dfrA12	100	498/498	ABNFCK010000055.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.guided.35, whole genome shotgun sequence	2756..3253	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFCK010000034.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-051 SAMN34415915-rid17830113.denovo.40, whole genome shotgun sequence	3134..3264																																																						avrA	ABNFCK010000002.1	80995..81864	99.195	870	0						
GCA_032268395.1_PDT001708724.1_genomic.fna	Salmonella_enterica	0.5197	263.434 KB	6	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	8	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA1,aadA2,blaTEM-1B,blaTEM-1B,cml,cml,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNFCI010000007.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.denovo.07, whole genome shotgun sequence	69578..70015	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNFCI010000029.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.denovo.32, whole genome shotgun sequence	3597..4388	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABNFCI010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.denovo.35, whole genome shotgun sequence	1164..1955	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.03	438/438	ABNFCI010000053.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.guided.19, whole genome shotgun sequence	16444..16881	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNFCI010000056.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.guided.33, whole genome shotgun sequence	3297..4088	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABNFCI010000057.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.guided.34, whole genome shotgun sequence	3661..4452	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABNFCI010000029.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.denovo.32, whole genome shotgun sequence	1333..2193	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNFCI010000056.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.guided.33, whole genome shotgun sequence	1033..1893	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	ABNFCI010000029.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.denovo.32, whole genome shotgun sequence	2657..3578	Chloramphenicol	M22614	cml	96.66	929/909	ABNFCI010000056.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.guided.33, whole genome shotgun sequence	2357..3278	Chloramphenicol	M22614	sul3	100	792/792	ABNFCI010000029.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.denovo.32, whole genome shotgun sequence	6070..6861	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNFCI010000056.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.guided.33, whole genome shotgun sequence	5770..6561	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABNFCI010000027.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.denovo.29, whole genome shotgun sequence	3536..4735	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNFCI010000058.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.guided.36, whole genome shotgun sequence	1125..2324	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABNFCI010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.denovo.35, whole genome shotgun sequence	2363..2860	Trimethoprim	AM040708	dfrA12	100	498/498	ABNFCI010000057.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.guided.34, whole genome shotgun sequence	2756..3253	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFCI010000032.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-041 SAMN34415914-rid17830123.denovo.38, whole genome shotgun sequence	3134..3264																																																						avrA	ABNFCI010000002.1	80995..81864	99.195	870	0						
GCA_032268625.1_PDT001708626.1_genomic.fna	Salmonella_enterica	0.5212	106.123 KB	17	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFCT010000009.1 Salmonella enterica strain PNUSAS345306 SAMN34410594-rid17832733.denovo.009, whole genome shotgun sequence	56381..56818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNFCT010000107.1 Salmonella enterica strain PNUSAS345306 SAMN34410594-rid17832733.guided.061, whole genome shotgun sequence	9396..9833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNFCT010000061.1 Salmonella enterica strain PNUSAS345306 SAMN34410594-rid17832733.denovo.063, whole genome shotgun sequence	1968..2610																																																						avrA	ABNFCT010000005.1	81526..82395	99.425	870	0						
GCA_032268685.1_PDT001708517.1_genomic.fna	Salmonella_enterica	0.5203	490.114 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFCY010000001.1 Salmonella enterica strain PNUSAS345257 SAMN34409084-rid17832023.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFCY010000022.1 Salmonella enterica strain PNUSAS345257 SAMN34409084-rid17832023.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFCY010000012.1 Salmonella enterica strain PNUSAS345257 SAMN34409084-rid17832023.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNFCY010000016.1 Salmonella enterica strain PNUSAS345257 SAMN34409084-rid17832023.denovo.19, whole genome shotgun sequence	3446..3707		enterobacteriales	IncX1	98.93	374 / 374	ABNFCY010000013.1 Salmonella enterica strain PNUSAS345257 SAMN34409084-rid17832023.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNFCY010000002.1	553690..554559	99.54	870	0						
GCA_032268705.1_PDT001708518.1_genomic.fna	Salmonella_enterica	0.5208	489.665 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFCW010000001.1 Salmonella enterica strain PNUSAS345261 SAMN34409078-rid17832033.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFCW010000025.1 Salmonella enterica strain PNUSAS345261 SAMN34409078-rid17832033.guided.16, whole genome shotgun sequence	2848..3285	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFCW010000013.1 Salmonella enterica strain PNUSAS345261 SAMN34409078-rid17832033.denovo.14, whole genome shotgun sequence	9588..10230	enterobacteriales	IncFII(S)	100	262 / 262	ABNFCW010000013.1 Salmonella enterica strain PNUSAS345261 SAMN34409078-rid17832033.denovo.14, whole genome shotgun sequence	54222..54483																																																avrA	ABNFCW010000002.1	584136..585005	99.54	870	0						
GCA_032268725.1_PDT001708617.1_genomic.fna	Salmonella_enterica	0.5208	213.777 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		1	IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFCX010000001.1 Salmonella enterica strain PNUSAS345285 SAMN34410538-rid17829753.denovo.01, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFCX010000030.1 Salmonella enterica strain PNUSAS345285 SAMN34410538-rid17829753.denovo.33, whole genome shotgun sequence	2676..3512	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFCX010000030.1 Salmonella enterica strain PNUSAS345285 SAMN34410538-rid17829753.denovo.33, whole genome shotgun sequence	3512..4315	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNFCX010000066.1 Salmonella enterica strain PNUSAS345285 SAMN34410538-rid17829753.guided.40, whole genome shotgun sequence	12193..12630	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFCX010000068.1 Salmonella enterica strain PNUSAS345285 SAMN34410538-rid17829753.guided.44, whole genome shotgun sequence	4801..5637	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFCX010000068.1 Salmonella enterica strain PNUSAS345285 SAMN34410538-rid17829753.guided.44, whole genome shotgun sequence	3998..4801	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNFCX010000023.1 Salmonella enterica strain PNUSAS345285 SAMN34410538-rid17829753.denovo.23, whole genome shotgun sequence	49502..50647	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	99.91	1146/1146	ABNFCX010000064.1 Salmonella enterica strain PNUSAS345285 SAMN34410538-rid17829753.guided.30, whole genome shotgun sequence	7323..8468	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNFCX010000065.1 Salmonella enterica strain PNUSAS345285 SAMN34410538-rid17829753.guided.31, whole genome shotgun sequence	7323..8468	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.27	1214/1215	ABNFCX010000040.1 Salmonella enterica strain PNUSAS345285 SAMN34410538-rid17829753.denovo.46, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNFCX010000069.1 Salmonella enterica strain PNUSAS345285 SAMN34410538-rid17829753.guided.52, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNFCX010000030.1 Salmonella enterica strain PNUSAS345285 SAMN34410538-rid17829753.denovo.33, whole genome shotgun sequence	4376..5191	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFCX010000068.1 Salmonella enterica strain PNUSAS345285 SAMN34410538-rid17829753.guided.44, whole genome shotgun sequence	3122..3937	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNFCX010000030.1 Salmonella enterica strain PNUSAS345285 SAMN34410538-rid17829753.denovo.33, whole genome shotgun sequence	141..1415	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNFCX010000068.1 Salmonella enterica strain PNUSAS345285 SAMN34410538-rid17829753.guided.44, whole genome shotgun sequence	6898..8172	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																			enterobacteriales	IncC	100	417 / 417	ABNFCX010000024.1 Salmonella enterica strain PNUSAS345285 SAMN34410538-rid17829753.denovo.24, whole genome shotgun sequence	17493..17909																																																						avrA	ABNFCX010000004.1	174639..175508	99.885	870	0						
GCA_032268745.1_PDT001708514.1_genomic.fna	Salmonella_enterica	0.5232	510.133 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFCZ010000002.1 Salmonella enterica strain PNUSAS345258 SAMN34409075-rid17832003.denovo.02, whole genome shotgun sequence	63811..64248	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFCZ010000026.1 Salmonella enterica strain PNUSAS345258 SAMN34409075-rid17832003.guided.16, whole genome shotgun sequence	34147..34584	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFCZ010000003.1	149828..150697	99.655	870	0						
GCA_032268765.1_PDT001708513.1_genomic.fna	Salmonella_enterica	0.5222	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFDA010000001.1 Salmonella enterica strain PNUSAS345138 SAMN34409409-rid17831993.denovo.01, whole genome shotgun sequence	799456..799893	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFDA010000026.1 Salmonella enterica strain PNUSAS345138 SAMN34409409-rid17831993.guided.18, whole genome shotgun sequence	24944..25381	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFDA010000002.1	146984..147853	98.966	870	0						
GCA_032268785.1_PDT001708472.1_genomic.fna	Salmonella_enterica	0.5209	408.383 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFDK010000001.1 Salmonella enterica strain PNUSAS345209 SAMN34405856-rid17831723.denovo.01, whole genome shotgun sequence	287464..287901	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFDK010000029.1 Salmonella enterica strain PNUSAS345209 SAMN34405856-rid17831723.guided.21, whole genome shotgun sequence	4007..4444	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFDK010000008.1	173446..174314	99.195	870	0						
GCA_032268805.1_PDT001708471.1_genomic.fna	Salmonella_enterica	0.5199	161.067 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrB_p.S464F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNFDL010000009.1 Salmonella enterica strain PNUSAS345200 SAMN34405851-rid17831713.denovo.09, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNFDL010000059.1 Salmonella enterica strain PNUSAS345200 SAMN34405851-rid17831713.guided.37, whole genome shotgun sequence	10165..10599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrB p.S464F	TCT -> TTC	S -> F	Ciprofloxacin	27896141																																																																																						
GCA_032268825.1_PDT001708473.1_genomic.fna	Salmonella_enterica	0.5205	490.014 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFDJ010000001.1 Salmonella enterica strain PNUSAS345118 SAMN34407612-rid17831733.denovo.01, whole genome shotgun sequence	815011..815448	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNFDJ010000016.1 Salmonella enterica strain PNUSAS345118 SAMN34407612-rid17831733.denovo.18, whole genome shotgun sequence	573..1403	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABNFDJ010000016.1 Salmonella enterica strain PNUSAS345118 SAMN34407612-rid17831733.denovo.18, whole genome shotgun sequence	1409..2212	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNFDJ010000032.1 Salmonella enterica strain PNUSAS345118 SAMN34407612-rid17831733.guided.14, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNFDJ010000034.1 Salmonella enterica strain PNUSAS345118 SAMN34407612-rid17831733.guided.23, whole genome shotgun sequence	5239..6069	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABNFDJ010000034.1 Salmonella enterica strain PNUSAS345118 SAMN34407612-rid17831733.guided.23, whole genome shotgun sequence	4430..5233	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNFDJ010000021.1 Salmonella enterica strain PNUSAS345118 SAMN34407612-rid17831733.denovo.26, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNFDJ010000035.1 Salmonella enterica strain PNUSAS345118 SAMN34407612-rid17831733.guided.25, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNFDJ010000016.1 Salmonella enterica strain PNUSAS345118 SAMN34407612-rid17831733.denovo.18, whole genome shotgun sequence	2273..3088	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFDJ010000034.1 Salmonella enterica strain PNUSAS345118 SAMN34407612-rid17831733.guided.23, whole genome shotgun sequence	3554..4369	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFDJ010000017.1 Salmonella enterica strain PNUSAS345118 SAMN34407612-rid17831733.denovo.20, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNFDJ010000019.1 Salmonella enterica strain PNUSAS345118 SAMN34407612-rid17831733.denovo.22, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	95.76	377 / 377	ABNFDJ010000016.1 Salmonella enterica strain PNUSAS345118 SAMN34407612-rid17831733.denovo.18, whole genome shotgun sequence	13377..13753																																									avrA	ABNFDJ010000002.1	553349..554218	99.54	870	0						
GCA_032268845.1_PDT001708437.1_genomic.fna	Salmonella_enterica	0.5204	331.835 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFDM010000002.1 Salmonella enterica subsp. enterica serovar Newport strain GT23-0236 SAMN34405861-rid17831483.denovo.02, whole genome shotgun sequence	235508..235945	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFDM010000042.1 Salmonella enterica subsp. enterica serovar Newport strain GT23-0236 SAMN34405861-rid17831483.guided.29, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNFDM010000022.1 Salmonella enterica subsp. enterica serovar Newport strain GT23-0236 SAMN34405861-rid17831483.denovo.22, whole genome shotgun sequence	2272..2805																																																						avrA	ABNFDM010000008.1	150647..151516	99.195	870	0						
GCA_032268865.1_PDT001708434.1_genomic.fna	Salmonella_enterica	0.5217	343.532 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFDO010000001.1 Salmonella enterica strain PNUSAS345205 SAMN34405850-rid17831463.denovo.01, whole genome shotgun sequence	468632..469069	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	423/438	ABNFDO010000039.1 Salmonella enterica strain PNUSAS345205 SAMN34405850-rid17831463.guided.24, whole genome shotgun sequence	1..423	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNFDO010000025.1 Salmonella enterica strain PNUSAS345205 SAMN34405850-rid17831463.denovo.28, whole genome shotgun sequence	547..675	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNFDO010000017.1 Salmonella enterica strain PNUSAS345205 SAMN34405850-rid17831463.denovo.17, whole genome shotgun sequence	67692..67833																																																avrA	ABNFDO010000010.1	39350..40219	98.966	870	0						
GCA_032268885.1_PDT001708483.1_genomic.fna	Salmonella_enterica	0.5219	397.524 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFDF010000001.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFDF010000022.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.denovo.23, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFDF010000022.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.denovo.23, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFDF010000031.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.denovo.37, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFDF010000031.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.denovo.37, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNFDF010000044.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.guided.25, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFDF010000044.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.guided.25, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFDF010000045.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.guided.29, whole genome shotgun sequence	18332..18769	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNFDF010000048.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.guided.36, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFDF010000048.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.guided.36, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNFDF010000028.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.denovo.32, whole genome shotgun sequence	3320..4533	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFDF010000047.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.guided.33, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNFDF010000022.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.denovo.23, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFDF010000044.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.guided.25, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFDF010000022.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.denovo.23, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFDF010000044.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.guided.25, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFDF010000026.1 Salmonella enterica strain PNUSAS345259 SAMN34409073-rid17831793.denovo.28, whole genome shotgun sequence	8756..9315																																																						avrA	ABNFDF010000003.1	94085..94954	99.655	870	0						
GCA_032268905.1_PDT001708493.1_genomic.fna	Salmonella_enterica	0.5211	401.722 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.S83Y	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFDB010000004.1 Salmonella enterica strain PNUSAS345264 SAMN34409086-rid17831853.denovo.04, whole genome shotgun sequence	159428..159865	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFDB010000020.1 Salmonella enterica strain PNUSAS345264 SAMN34409086-rid17831853.denovo.21, whole genome shotgun sequence	27456..28292	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFDB010000020.1 Salmonella enterica strain PNUSAS345264 SAMN34409086-rid17831853.denovo.21, whole genome shotgun sequence	26653..27456	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNFDB010000032.1 Salmonella enterica strain PNUSAS345264 SAMN34409086-rid17831853.guided.23, whole genome shotgun sequence	27497..28333	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFDB010000032.1 Salmonella enterica strain PNUSAS345264 SAMN34409086-rid17831853.guided.23, whole genome shotgun sequence	26694..27497	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNFDB010000033.1 Salmonella enterica strain PNUSAS345264 SAMN34409086-rid17831853.guided.25, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	ABNFDB010000020.1 Salmonella enterica strain PNUSAS345264 SAMN34409086-rid17831853.denovo.21, whole genome shotgun sequence	31428..32641	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFDB010000035.1 Salmonella enterica strain PNUSAS345264 SAMN34409086-rid17831853.guided.30, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNFDB010000020.1 Salmonella enterica strain PNUSAS345264 SAMN34409086-rid17831853.denovo.21, whole genome shotgun sequence	25777..26592	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFDB010000032.1 Salmonella enterica strain PNUSAS345264 SAMN34409086-rid17831853.guided.23, whole genome shotgun sequence	25818..26633	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNFDB010000020.1 Salmonella enterica strain PNUSAS345264 SAMN34409086-rid17831853.denovo.21, whole genome shotgun sequence	29553..30827	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNFDB010000032.1 Salmonella enterica strain PNUSAS345264 SAMN34409086-rid17831853.guided.23, whole genome shotgun sequence	29594..30868	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncC	100	417 / 417	ABNFDB010000018.1 Salmonella enterica strain PNUSAS345264 SAMN34409086-rid17831853.denovo.18, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNFDB010000015.1 Salmonella enterica strain PNUSAS345264 SAMN34409086-rid17831853.denovo.15, whole genome shotgun sequence	63391..63650		enterobacteriales	IncX1	98.66	374 / 374	ABNFDB010000015.1 Salmonella enterica strain PNUSAS345264 SAMN34409086-rid17831853.denovo.15, whole genome shotgun sequence	24683..25056																																									avrA	ABNFDB010000001.1	504424..505292	99.54	870	0						
GCA_032268925.1_PDT001708489.1_genomic.fna	Salmonella_enterica	0.5216	275.099 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFDE010000001.1 Salmonella enterica strain PNUSAS345255 SAMN34409077-rid17831823.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFDE010000043.1 Salmonella enterica strain PNUSAS345255 SAMN34409077-rid17831823.guided.23, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFDE010000004.1	175008..175876	99.77	870	0						
GCA_032268945.1_PDT001708479.1_genomic.fna	Salmonella_enterica	0.5214	382.677 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNFDH010000001.1 Salmonella enterica strain PNUSAS345114 SAMN34407618-rid17831763.denovo.01, whole genome shotgun sequence	477889..478326	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNFDH010000036.1 Salmonella enterica strain PNUSAS345114 SAMN34407618-rid17831763.guided.22, whole genome shotgun sequence	15979..16416	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFDH010000002.1	145052..145921	99.31	870	0						
GCA_032268965.1_PDT001708491.1_genomic.fna	Salmonella_enterica	0.5223	364.009 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFDD010000001.1 Salmonella enterica strain PNUSAS345113 SAMN34407613-rid17831833.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFDD010000030.1 Salmonella enterica strain PNUSAS345113 SAMN34407613-rid17831833.guided.19, whole genome shotgun sequence	24944..25381	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNFDD010000019.1 Salmonella enterica strain PNUSAS345113 SAMN34407613-rid17831833.denovo.22, whole genome shotgun sequence	1240..1370																																																						avrA	ABNFDD010000004.1	183135..184004	98.966	870	0						
GCA_032268985.1_PDT001708490.1_genomic.fna	Salmonella_enterica	0.5212	593.404 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNFDC010000001.1 Salmonella enterica strain PNUSAS345254 SAMN34409083-rid17828553.denovo.01, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNFDC010000026.1 Salmonella enterica strain PNUSAS345254 SAMN34409083-rid17828553.guided.09, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFDC010000003.1	497130..497998	99.425	870	0						
GCA_032269005.1_PDT001708481.1_genomic.fna	Salmonella_enterica	0.5216	273.324 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFDG010000002.1 Salmonella enterica strain PNUSAS345115 SAMN34407622-rid17831773.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFDG010000048.1 Salmonella enterica strain PNUSAS345115 SAMN34407622-rid17831773.guided.33, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNFDG010000017.1 Salmonella enterica strain PNUSAS345115 SAMN34407622-rid17831773.denovo.17, whole genome shotgun sequence	48435..49077	enterobacteriales	IncFII(S)	100	262 / 262	ABNFDG010000017.1 Salmonella enterica strain PNUSAS345115 SAMN34407622-rid17831773.denovo.17, whole genome shotgun sequence	64162..64423																																																avrA	ABNFDG010000006.1	155216..156084	100	869	0						
GCA_032269025.1_PDT001708478.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFDI010000001.1 Salmonella enterica strain PNUSAS345119 SAMN34407620-rid17831753.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFDI010000028.1 Salmonella enterica strain PNUSAS345119 SAMN34407620-rid17831753.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNFDI010000022.1 Salmonella enterica strain PNUSAS345119 SAMN34407620-rid17831753.denovo.25, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFDI010000017.1 Salmonella enterica strain PNUSAS345119 SAMN34407620-rid17831753.denovo.18, whole genome shotgun sequence	6825..7467		enterobacteriales	IncFII(S)	100	262 / 262	ABNFDI010000018.1 Salmonella enterica strain PNUSAS345119 SAMN34407620-rid17831753.denovo.20, whole genome shotgun sequence	3397..3658																																									avrA	ABNFDI010000002.1	553636..554505	99.54	870	0						
GCA_032269045.1_PDT001708436.1_genomic.fna	Salmonella_enterica	0.5209	558.88 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFDN010000001.1 Salmonella enterica strain PNUSAS345206 SAMN34405858-rid17831473.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFDN010000021.1 Salmonella enterica strain PNUSAS345206 SAMN34405858-rid17831473.guided.14, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032269065.1_PDT001708433.1_genomic.fna	Salmonella_enterica	0.5215	406.117 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFDP010000001.1 Salmonella enterica strain PNUSAS345204 SAMN34405857-rid17829153.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFDP010000027.1 Salmonella enterica strain PNUSAS345204 SAMN34405857-rid17829153.guided.16, whole genome shotgun sequence	34100..34537	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFDP010000020.1 Salmonella enterica strain PNUSAS345204 SAMN34405857-rid17829153.denovo.22, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABNFDP010000021.1 Salmonella enterica strain PNUSAS345204 SAMN34405857-rid17829153.denovo.24, whole genome shotgun sequence	3390..3651																																																avrA	ABNFDP010000002.1	553678..554547	99.54	870	0						
GCA_032269085.1_PDT001708431.1_genomic.fna	Salmonella_enterica	0.5212	440.366 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFDR010000001.1 Salmonella enterica strain PNUSAS345154 SAMN34403592-rid17831443.denovo.01, whole genome shotgun sequence	383054..383491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFDR010000028.1 Salmonella enterica strain PNUSAS345154 SAMN34403592-rid17831443.guided.22, whole genome shotgun sequence	5283..5720	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFDR010000008.1	140134..141003	98.966	870	0						
GCA_032269105.1_PDT001708429.1_genomic.fna	Salmonella_enterica	0.5212	560.202 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFDS010000001.1 Salmonella enterica strain PNUSAS345203 SAMN34405854-rid17831433.denovo.01, whole genome shotgun sequence	530184..530621	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFDS010000027.1 Salmonella enterica strain PNUSAS345203 SAMN34405854-rid17831433.guided.23, whole genome shotgun sequence	1358..1795	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFDS010000002.1	535425..536294	99.195	870	0						
GCA_032269125.1_PDT001708432.1_genomic.fna	Salmonella_enterica	0.5225	332.888 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFDQ010000001.1 Salmonella enterica strain PNUSAS345202 SAMN34405852-rid17831453.denovo.01, whole genome shotgun sequence	460175..460612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFDQ010000037.1 Salmonella enterica strain PNUSAS345202 SAMN34405852-rid17831453.guided.20, whole genome shotgun sequence	13243..13680	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFDQ010000002.1	149828..150697	99.655	870	0						
GCA_032269185.1_PDT001708414.1_genomic.fna	Salmonella_enterica	0.5208	383.879 KB	6	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFDV010000006.1 Salmonella enterica strain PNUSAS345161 SAMN34403676-rid17831353.denovo.06, whole genome shotgun sequence	90824..91261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFDV010000029.1 Salmonella enterica strain PNUSAS345161 SAMN34403676-rid17831353.guided.18, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFDV010000021.1 Salmonella enterica strain PNUSAS345161 SAMN34403676-rid17831353.denovo.23, whole genome shotgun sequence	18112..18754	enterobacteriales	IncFII(S)	100	262 / 262	ABNFDV010000021.1 Salmonella enterica strain PNUSAS345161 SAMN34403676-rid17831353.denovo.23, whole genome shotgun sequence	3412..3673																																																avrA	ABNFDV010000001.1	507544..508413	99.54	870	0						
GCA_032269205.1_PDT001708381.1_genomic.fna	Salmonella_enterica	0.521	389.315 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFDX010000001.1 Salmonella enterica strain PNUSAS345143 SAMN34403583-rid17831123.denovo.01, whole genome shotgun sequence	498154..498591	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFDX010000024.1 Salmonella enterica strain PNUSAS345143 SAMN34403583-rid17831123.guided.21, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFDX010000003.1	171344..172213	99.425	870	0						
GCA_032269225.1_PDT001708383.1_genomic.fna	Salmonella_enterica	0.5219	212.944 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFDW010000001.1 Salmonella enterica strain PNUSAS345146 SAMN34403591-rid17829003.denovo.01, whole genome shotgun sequence	727904..728341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFDW010000046.1 Salmonella enterica strain PNUSAS345146 SAMN34403591-rid17829003.guided.30, whole genome shotgun sequence	12120..12557	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFDW010000003.1	153272..154141	99.195	870	0						
GCA_032269245.1_PDT001708380.1_genomic.fna	Salmonella_enterica	0.5223	349.9 KB	4	aroC_152,dnaN_14,hemD_344,hisD_551,purE_89,sucA_313,thrA_2	1891	13:i:1,5	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_152	dnaN	100	100	dnaN_14	hemD	100	100	hemD_344	hisD	100	100	hisD_551	purE	100	100	purE_89	sucA	100	100	sucA_313	thrA	100	100	thrA_2	13	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	Idikan		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNFDY010000001.1 Salmonella enterica strain PNUSAS345145 SAMN34403579-rid17831113.denovo.01, whole genome shotgun sequence	153358..153795	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNFDY010000036.1 Salmonella enterica strain PNUSAS345145 SAMN34403579-rid17831113.guided.23, whole genome shotgun sequence	17094..17531	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNFDY010000003.1 Salmonella enterica strain PNUSAS345145 SAMN34403579-rid17831113.denovo.03, whole genome shotgun sequence	182104..182526	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNFDY010000037.1 Salmonella enterica strain PNUSAS345145 SAMN34403579-rid17831113.guided.27, whole genome shotgun sequence	2979..3401	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNFDY010000028.1 Salmonella enterica strain PNUSAS345145 SAMN34403579-rid17831113.denovo.32, whole genome shotgun sequence	547..675																																																																	
GCA_032269265.1_PDT001708379.1_genomic.fna	Salmonella_enterica	0.5221	248.959 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFDZ010000002.1 Salmonella enterica strain PNUSAS345144 SAMN34403581-rid17828993.denovo.02, whole genome shotgun sequence	523156..523593	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFDZ010000040.1 Salmonella enterica strain PNUSAS345144 SAMN34403581-rid17828993.guided.25, whole genome shotgun sequence	13146..13583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFDZ010000001.1	585339..586208	99.195	870	0						
GCA_032269285.1_PDT001708372.1_genomic.fna	Salmonella_enterica	0.521	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFEA010000001.1 Salmonella enterica strain PNUSAS345134 SAMN34403469-rid17831073.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFEA010000024.1 Salmonella enterica strain PNUSAS345134 SAMN34403469-rid17831073.guided.14, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFEA010000018.1 Salmonella enterica strain PNUSAS345134 SAMN34403469-rid17831073.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNFEA010000015.1 Salmonella enterica strain PNUSAS345134 SAMN34403469-rid17831073.denovo.16, whole genome shotgun sequence	37108..37369																																																avrA	ABNFEA010000002.1	506879..507748	99.54	870	0						
GCA_032269305.1_PDT001708375.1_genomic.fna	Salmonella_enterica	0.5228	560.921 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNFEB010000001.1 Salmonella enterica strain PNUSAS345140 SAMN34403552-rid17831093.denovo.01, whole genome shotgun sequence	1045231..1045668	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNFEB010000024.1 Salmonella enterica strain PNUSAS345140 SAMN34403552-rid17831093.guided.18, whole genome shotgun sequence	9637..10074	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFEB010000003.1	419879..420748	99.54	870	0						
GCA_032269325.1_PDT001708371.1_genomic.fna	Salmonella_enterica	0.5212	406.408 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	4	Col440I,ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFEC010000001.1 Salmonella enterica strain PNUSAS344878 SAMN34385849-rid17831063.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFEC010000027.1 Salmonella enterica strain PNUSAS344878 SAMN34385849-rid17831063.guided.13, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col440I	93.86	114 / 114	ABNFEC010000021.1 Salmonella enterica strain PNUSAS344878 SAMN34385849-rid17831063.denovo.24, whole genome shotgun sequence	2734..2847	enterobacteriales	ColRNAI	90.08	131 / 130	ABNFEC010000020.1 Salmonella enterica strain PNUSAS344878 SAMN34385849-rid17831063.denovo.22, whole genome shotgun sequence	810..940		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFEC010000016.1 Salmonella enterica strain PNUSAS344878 SAMN34385849-rid17831063.denovo.18, whole genome shotgun sequence	6818..7460		enterobacteriales	IncFII(S)	100	262 / 262	ABNFEC010000017.1 Salmonella enterica strain PNUSAS344878 SAMN34385849-rid17831063.denovo.19, whole genome shotgun sequence	3402..3663																																		avrA	ABNFEC010000002.1	553057..553926	99.54	870	0						
GCA_032269345.1_PDT001708367.1_genomic.fna	Salmonella_enterica	0.522	351.854 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNFED010000001.1 Salmonella enterica strain PNUSAS345032 SAMN34386294-rid17831043.denovo.01, whole genome shotgun sequence	532076..532513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNFED010000035.1 Salmonella enterica strain PNUSAS345032 SAMN34386294-rid17831043.guided.23, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFED010000003.1	131921..132790	98.966	870	0						
GCA_032269365.1_PDT001708362.1_genomic.fna	Salmonella_enterica	0.5212	489.16 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFEF010000001.1 Salmonella enterica strain PNUSAS344874 SAMN34385830-rid17831003.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFEF010000025.1 Salmonella enterica strain PNUSAS344874 SAMN34385830-rid17831003.guided.12, whole genome shotgun sequence	32327..32764	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFEF010000015.1 Salmonella enterica strain PNUSAS344874 SAMN34385830-rid17831003.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNFEF010000017.1 Salmonella enterica strain PNUSAS344874 SAMN34385830-rid17831003.denovo.20, whole genome shotgun sequence	3398..3659																																																avrA	ABNFEF010000002.1	553635..554504	99.54	870	0						
GCA_032269385.1_PDT001708366.1_genomic.fna	Salmonella_enterica	0.5215	447.967 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(BS512),Col(pHAD28),Col156	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNFEE010000001.1 Salmonella enterica strain PNUSAS345036 SAMN34385891-rid17831033.denovo.01, whole genome shotgun sequence	778522..778959	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNFEE010000032.1 Salmonella enterica strain PNUSAS345036 SAMN34385891-rid17831033.guided.20, whole genome shotgun sequence	15215..15652	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(BS512)	100	233 / 233	ABNFEE010000023.1 Salmonella enterica strain PNUSAS345036 SAMN34385891-rid17831033.denovo.26, whole genome shotgun sequence	400..632	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNFEE010000020.1 Salmonella enterica strain PNUSAS345036 SAMN34385891-rid17831033.denovo.23, whole genome shotgun sequence	239..369		enterobacteriales	Col156	94.81	154 / 154	ABNFEE010000019.1 Salmonella enterica strain PNUSAS345036 SAMN34385891-rid17831033.denovo.22, whole genome shotgun sequence	792..945																																									avrA	ABNFEE010000006.1	120504..121373	99.425	870	0						
GCA_032269405.1_PDT001708360.1_genomic.fna	Salmonella_enterica	0.5212	299.335 KB	5	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFEG010000001.1 Salmonella enterica strain PNUSAS345035 SAMN34385903-rid17830983.denovo.01, whole genome shotgun sequence	133914..134351	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFEG010000036.1 Salmonella enterica strain PNUSAS345035 SAMN34385903-rid17830983.guided.23, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032269425.1_PDT001708356.1_genomic.fna	Salmonella_enterica	0.5211	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFEH010000001.1 Salmonella enterica strain PNUSAS344882 SAMN34385856-rid17830963.denovo.01, whole genome shotgun sequence	814836..815273	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFEH010000026.1 Salmonella enterica strain PNUSAS344882 SAMN34385856-rid17830963.guided.15, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFEH010000018.1 Salmonella enterica strain PNUSAS344882 SAMN34385856-rid17830963.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNFEH010000019.1 Salmonella enterica strain PNUSAS344882 SAMN34385856-rid17830963.denovo.22, whole genome shotgun sequence	3398..3659																																																avrA	ABNFEH010000002.1	553093..553962	99.54	870	0						
GCA_032269445.1_PDT001708354.1_genomic.fna	Salmonella_enterica	0.5211	480.23 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFEI010000001.1 Salmonella enterica strain PNUSAS344873 SAMN34385756-rid17830943.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFEI010000027.1 Salmonella enterica strain PNUSAS344873 SAMN34385756-rid17830943.guided.22, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFEI010000017.1 Salmonella enterica strain PNUSAS344873 SAMN34385756-rid17830943.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNFEI010000019.1 Salmonella enterica strain PNUSAS344873 SAMN34385756-rid17830943.denovo.21, whole genome shotgun sequence	3398..3659																																																avrA	ABNFEI010000002.1	585418..586287	99.54	870	0						
GCA_032269465.1_PDT001708351.1_genomic.fna	Salmonella_enterica	0.5211	489.437 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFEJ010000001.1 Salmonella enterica strain PNUSAS344880 SAMN34385843-rid17830923.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFEJ010000022.1 Salmonella enterica strain PNUSAS344880 SAMN34385843-rid17830923.guided.12, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFEJ010000015.1 Salmonella enterica strain PNUSAS344880 SAMN34385843-rid17830923.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNFEJ010000016.1 Salmonella enterica strain PNUSAS344880 SAMN34385843-rid17830923.denovo.19, whole genome shotgun sequence	3388..3649																																																avrA	ABNFEJ010000002.1	552676..553545	99.54	870	0						
GCA_032269485.1_PDT001708349.1_genomic.fna	Salmonella_enterica	0.5213	400.829 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFEK010000001.1 Salmonella enterica strain PNUSAS345033 SAMN34385725-rid17830903.denovo.01, whole genome shotgun sequence	477587..478024	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFEK010000030.1 Salmonella enterica strain PNUSAS345033 SAMN34385725-rid17830903.guided.20, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFEK010000019.1 Salmonella enterica strain PNUSAS345033 SAMN34385725-rid17830903.denovo.22, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNFEK010000016.1 Salmonella enterica strain PNUSAS345033 SAMN34385725-rid17830903.denovo.17, whole genome shotgun sequence	37108..37369																																																avrA	ABNFEK010000002.1	553636..554505	99.54	870	0						
GCA_032269505.1_PDT001708345.1_genomic.fna	Salmonella_enterica	0.522	608.179 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,sul1,tet(A),tet(A),tet(A),dfrA1,dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFEM010000001.1 Salmonella enterica strain PNUSAS344876 SAMN34385762-rid17830873.denovo.01, whole genome shotgun sequence	687395..687832	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNFEM010000029.1 Salmonella enterica strain PNUSAS344876 SAMN34385762-rid17830873.guided.20, whole genome shotgun sequence	4042..4479	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNFEM010000013.1 Salmonella enterica strain PNUSAS344876 SAMN34385762-rid17830873.denovo.14, whole genome shotgun sequence	38841..39746	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNFEM010000033.1 Salmonella enterica strain PNUSAS344876 SAMN34385762-rid17830873.guided.29, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNFEM010000013.1 Salmonella enterica strain PNUSAS344876 SAMN34385762-rid17830873.denovo.14, whole genome shotgun sequence	26927..28140	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFEM010000032.1 Salmonella enterica strain PNUSAS344876 SAMN34385762-rid17830873.guided.28, whole genome shotgun sequence	739..1952	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNFEM010000013.1 Salmonella enterica strain PNUSAS344876 SAMN34385762-rid17830873.denovo.14, whole genome shotgun sequence	32691..33530	Sulfamethoxazole	U12338	sul1	99.88	840/840	ABNFEM010000030.1 Salmonella enterica strain PNUSAS344876 SAMN34385762-rid17830873.guided.23, whole genome shotgun sequence	3957..4796	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFEM010000031.1 Salmonella enterica strain PNUSAS344876 SAMN34385762-rid17830873.guided.24, whole genome shotgun sequence	3957..4796	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNFEM010000013.1 Salmonella enterica strain PNUSAS344876 SAMN34385762-rid17830873.denovo.14, whole genome shotgun sequence	28741..30015	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNFEM010000030.1 Salmonella enterica strain PNUSAS344876 SAMN34385762-rid17830873.guided.23, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNFEM010000031.1 Salmonella enterica strain PNUSAS344876 SAMN34385762-rid17830873.guided.24, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNFEM010000013.1 Salmonella enterica strain PNUSAS344876 SAMN34385762-rid17830873.denovo.14, whole genome shotgun sequence	31173..31646	Trimethoprim	X00926	dfrA1	100	474/474	ABNFEM010000030.1 Salmonella enterica strain PNUSAS344876 SAMN34385762-rid17830873.guided.23, whole genome shotgun sequence	2439..2912	Trimethoprim	X00926	dfrA1	100	474/474	ABNFEM010000031.1 Salmonella enterica strain PNUSAS344876 SAMN34385762-rid17830873.guided.24, whole genome shotgun sequence	2439..2912	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNFEM010000013.1 Salmonella enterica strain PNUSAS344876 SAMN34385762-rid17830873.denovo.14, whole genome shotgun sequence	4434..4684																																																						avrA	ABNFEM010000002.1	553473..554342	99.77	870	0						
GCA_032269525.1_PDT001708317.1_genomic.fna	Salmonella_enterica	0.5215	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFEN010000001.1 Salmonella enterica strain PNUSAS344102 SAMN34381852-rid17830683.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.52	402/438	ABNFEN010000022.1 Salmonella enterica strain PNUSAS344102 SAMN34381852-rid17830683.guided.16, whole genome shotgun sequence	2..403	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFEN010000011.1 Salmonella enterica strain PNUSAS344102 SAMN34381852-rid17830683.denovo.11, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABNFEN010000014.1 Salmonella enterica strain PNUSAS344102 SAMN34381852-rid17830683.denovo.17, whole genome shotgun sequence	3366..3627																																																avrA	ABNFEN010000002.1	553642..554511	99.54	870	0						
GCA_032269545.1_PDT001708347.1_genomic.fna	Salmonella_enterica	0.5219	545.172 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFEL010000001.1 Salmonella enterica strain PNUSAS345066 SAMN34385875-rid17830893.denovo.01, whole genome shotgun sequence	1108125..1108562	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNFEL010000020.1 Salmonella enterica strain PNUSAS345066 SAMN34385875-rid17830893.guided.13, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFEL010000003.1	174128..174997	99.77	870	0						
GCA_032269565.1_PDT001708310.1_genomic.fna	Salmonella_enterica	0.5206	489.864 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFEP010000001.1 Salmonella enterica strain PNUSAS344106 SAMN34381831-rid17830653.denovo.01, whole genome shotgun sequence	774378..774815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFEP010000027.1 Salmonella enterica strain PNUSAS344106 SAMN34381831-rid17830653.guided.19, whole genome shotgun sequence	1781..2218	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFEP010000013.1 Salmonella enterica strain PNUSAS344106 SAMN34381831-rid17830653.denovo.13, whole genome shotgun sequence	40541..41183	enterobacteriales	IncFII(S)	100	262 / 262	ABNFEP010000018.1 Salmonella enterica strain PNUSAS344106 SAMN34381831-rid17830653.denovo.18, whole genome shotgun sequence	3274..3535		enterobacteriales	IncX1	98.93	374 / 374	ABNFEP010000015.1 Salmonella enterica strain PNUSAS344106 SAMN34381831-rid17830653.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNFEP010000002.1	506440..507309	99.54	870	0						
GCA_032269585.1_PDT001708365.1_genomic.fna	Salmonella_enterica	0.5212	223.806 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFER010000001.1 Salmonella enterica strain PNUSAS345034 SAMN34385908-rid17831023.denovo.01, whole genome shotgun sequence	458968..459405	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFER010000051.1 Salmonella enterica strain PNUSAS345034 SAMN34385908-rid17831023.guided.31, whole genome shotgun sequence	20617..21054	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFER010000016.1	39472..40341	99.885	870	0						
GCA_032269605.1_PDT001708316.1_genomic.fna	Salmonella_enterica	0.521	690.506 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNFEO010000001.1 Salmonella enterica strain PNUSAS344095 SAMN34381854-rid17828803.denovo.01, whole genome shotgun sequence	520198..520635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNFEO010000025.1 Salmonella enterica strain PNUSAS344095 SAMN34381854-rid17828803.guided.22, whole genome shotgun sequence	1441..1878	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNFEO010000016.1 Salmonella enterica strain PNUSAS344095 SAMN34381854-rid17828803.denovo.17, whole genome shotgun sequence	2572..3432	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNFEO010000023.1 Salmonella enterica strain PNUSAS344095 SAMN34381854-rid17828803.guided.16, whole genome shotgun sequence	4098..4958	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	98.59	142 / 142	ABNFEO010000010.1 Salmonella enterica strain PNUSAS344095 SAMN34381854-rid17828803.denovo.10, whole genome shotgun sequence	70639..70780																																																						avrA	ABNFEO010000003.1	173492..174360	99.425	870	0						
GCA_032269625.1_PDT001708307.1_genomic.fna	Salmonella_enterica	0.5214	489.999 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87G	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFEQ010000001.1 Salmonella enterica strain PNUSAS344097 SAMN34381839-rid17830633.denovo.01, whole genome shotgun sequence	814596..815033	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFEQ010000028.1 Salmonella enterica strain PNUSAS344097 SAMN34381839-rid17830633.guided.16, whole genome shotgun sequence	21977..22414	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																enterobacteriales	ColpVC	98.96	193 / 193	ABNFEQ010000019.1 Salmonella enterica strain PNUSAS344097 SAMN34381839-rid17830633.denovo.22, whole genome shotgun sequence	805..997	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFEQ010000012.1 Salmonella enterica strain PNUSAS344097 SAMN34381839-rid17830633.denovo.12, whole genome shotgun sequence	40540..41182		enterobacteriales	IncFII(S)	100	262 / 262	ABNFEQ010000016.1 Salmonella enterica strain PNUSAS344097 SAMN34381839-rid17830633.denovo.19, whole genome shotgun sequence	3414..3675																																									avrA	ABNFEQ010000002.1	505820..506689	99.54	870	0						
GCA_032269645.1_PDT001708364.1_genomic.fna	Salmonella_enterica	0.5211	351.485 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFES010000002.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.denovo.02, whole genome shotgun sequence	159453..159890	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFES010000026.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.denovo.26, whole genome shotgun sequence	31733..32569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFES010000026.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.denovo.26, whole genome shotgun sequence	30930..31733	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNFES010000050.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.guided.31, whole genome shotgun sequence	16103..16540	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFES010000054.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.guided.41, whole genome shotgun sequence	821..1657	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFES010000054.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.guided.41, whole genome shotgun sequence	18..821	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNFES010000026.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.denovo.26, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNFES010000032.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.denovo.36, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNFES010000032.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.denovo.36, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNFES010000032.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.denovo.36, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNFES010000049.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.guided.29, whole genome shotgun sequence	24717..25862	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNFES010000056.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.guided.46, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNFES010000056.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.guided.46, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNFES010000056.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.guided.46, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNFES010000026.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.denovo.26, whole genome shotgun sequence	35705..36918	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFES010000052.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.guided.37, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNFES010000026.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.denovo.26, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFES010000053.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.guided.38, whole genome shotgun sequence	3131..3946	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNFES010000026.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.denovo.26, whole genome shotgun sequence	33830..35104	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNFES010000055.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.guided.43, whole genome shotgun sequence	582..1856	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																												gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNFES010000024.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.denovo.24, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNFES010000020.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.denovo.20, whole genome shotgun sequence	16902..17161		enterobacteriales	IncX1	98.66	374 / 374	ABNFES010000020.1 Salmonella enterica strain PNUSAS345044 SAMN34385751-rid17831013.denovo.20, whole genome shotgun sequence	52756..53129																																									avrA	ABNFES010000006.1	173549..174417	99.54	870	0						
GCA_032269665.1_PDT001708359.1_genomic.fna	Salmonella_enterica	0.5216	229.312 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_105	3631	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_105	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFET010000001.1 Salmonella enterica strain PNUSAS344883 SAMN34385837-rid17830973.denovo.01, whole genome shotgun sequence	482064..482501	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFET010000047.1 Salmonella enterica strain PNUSAS344883 SAMN34385837-rid17830973.guided.32, whole genome shotgun sequence	10493..10930	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNFET010000029.1 Salmonella enterica strain PNUSAS344883 SAMN34385837-rid17830973.denovo.29, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNFET010000029.1 Salmonella enterica strain PNUSAS344883 SAMN34385837-rid17830973.denovo.29, whole genome shotgun sequence	9325..9586																																																avrA	ABNFET010000002.1	145794..146663	99.885	870	0						
GCA_032269685.1_PDT001708352.1_genomic.fna	Salmonella_enterica	0.515	196.223 KB	8	aroC_470,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2197	50:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_470	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABNFEU010000003.1 Salmonella enterica strain PNUSAS345040 SAMN34385936-rid17830933.denovo.03, whole genome shotgun sequence	288124..288561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABNFEU010000068.1 Salmonella enterica strain PNUSAS345040 SAMN34385936-rid17830933.guided.51, whole genome shotgun sequence	1644..2081	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	97.71	131 / 130	ABNFEU010000039.1 Salmonella enterica strain PNUSAS345040 SAMN34385936-rid17830933.denovo.42, whole genome shotgun sequence	1940..2070																																																																	
GCA_032269705.1_PDT001708350.1_genomic.fna	Salmonella_enterica	0.5213	278.574 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFEV010000001.1 Salmonella enterica strain PNUSAS345042 SAMN34385745-rid17830913.denovo.01, whole genome shotgun sequence	457993..458430	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFEV010000053.1 Salmonella enterica strain PNUSAS345042 SAMN34385745-rid17830913.guided.28, whole genome shotgun sequence	24996..25433	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.84	643 / 643	ABNFEV010000028.1 Salmonella enterica strain PNUSAS345042 SAMN34385745-rid17830913.denovo.30, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNFEV010000028.1 Salmonella enterica strain PNUSAS345042 SAMN34385745-rid17830913.denovo.30, whole genome shotgun sequence	9325..9586																																																avrA	ABNFEV010000007.1	94139..95008	99.885	870	0						
GCA_032269725.1_PDT001708314.1_genomic.fna	Salmonella_enterica	0.5206	397.32 KB	6	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNFEW010000001.1 Salmonella enterica strain PNUSAS344094 SAMN34381855-rid17830663.denovo.01, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNFEW010000059.1 Salmonella enterica strain PNUSAS344094 SAMN34381855-rid17830663.guided.18, whole genome shotgun sequence	19796..20233	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFEW010000012.1	101941..102810	99.655	870	0						
GCA_032269745.1_PDT001708313.1_genomic.fna	Salmonella_enterica	0.5212	261.471 KB	7	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNFEX010000002.1 Salmonella enterica strain PNUSAS344093 SAMN34381856-rid17828793.denovo.02, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNFEX010000063.1 Salmonella enterica strain PNUSAS344093 SAMN34381856-rid17828793.guided.41, whole genome shotgun sequence	1439..1876	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFEX010000008.1	93732..94601	99.77	870	0						
GCA_032269765.1_PDT001708311.1_genomic.fna	Salmonella_enterica	0.5211	376.701 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		6	Col(pHAD28),ColRNAI,ColpVC,IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFEY010000002.1 Salmonella enterica strain PNUSAS344091 SAMN34381835-rid17828773.denovo.02, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFEY010000047.1 Salmonella enterica strain PNUSAS344091 SAMN34381835-rid17828773.guided.31, whole genome shotgun sequence	3625..4062	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFEY010000030.1 Salmonella enterica strain PNUSAS344091 SAMN34381835-rid17828773.denovo.32, whole genome shotgun sequence	3134..3264	enterobacteriales	ColRNAI	90.08	131 / 130	ABNFEY010000031.1 Salmonella enterica strain PNUSAS344091 SAMN34381835-rid17828773.denovo.33, whole genome shotgun sequence	3981..4111		enterobacteriales	ColpVC	98.96	193 / 193	ABNFEY010000033.1 Salmonella enterica strain PNUSAS344091 SAMN34381835-rid17828773.denovo.36, whole genome shotgun sequence	805..997		enterobacteriales	IncFIB(S)	100	643 / 643	ABNFEY010000024.1 Salmonella enterica strain PNUSAS344091 SAMN34381835-rid17828773.denovo.24, whole genome shotgun sequence	19383..20025		enterobacteriales	IncFII(S)	100	262 / 262	ABNFEY010000023.1 Salmonella enterica strain PNUSAS344091 SAMN34381835-rid17828773.denovo.23, whole genome shotgun sequence	29383..29644		enterobacteriales	IncX1	98.93	374 / 374	ABNFEY010000022.1 Salmonella enterica strain PNUSAS344091 SAMN34381835-rid17828773.denovo.22, whole genome shotgun sequence	6868..7241																				avrA	ABNFEY010000001.1	482263..483129	99.54	870	0						
GCA_032269785.1_PDT001708306.1_genomic.fna	Salmonella_enterica	0.5151	196.227 KB	8	aroC_470,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2197	50:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_470	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABNFFA010000004.1 Salmonella enterica strain PNUSAS344101 SAMN34381833-rid17828753.denovo.04, whole genome shotgun sequence	333528..333965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABNFFA010000062.1 Salmonella enterica strain PNUSAS344101 SAMN34381833-rid17828753.guided.36, whole genome shotgun sequence	978..1415	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032269805.1_PDT001708308.1_genomic.fna	Salmonella_enterica	0.5186	293.261 KB	6	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFEZ010000002.1 Salmonella enterica strain PNUSAS344090 SAMN34381837-rid17828763.denovo.02, whole genome shotgun sequence	521375..521812	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFEZ010000049.1 Salmonella enterica strain PNUSAS344090 SAMN34381837-rid17828763.guided.28, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	90.79	152 / 154	ABNFEZ010000035.1 Salmonella enterica strain PNUSAS344090 SAMN34381837-rid17828763.denovo.39, whole genome shotgun sequence	3270..3421																																																						avrA	ABNFEZ010000001.1	553998..554867	99.31	870	0						
GCA_032269825.1_PDT001708304.1_genomic.fna	Salmonella_enterica	0.5223	211.914 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119*,thrA_118	448*	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	99.8003992015968	100	sucA_119*	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFFB010000002.1 Salmonella enterica strain PNUSAS344088 SAMN34381840-rid17830613.denovo.02, whole genome shotgun sequence	62306..62743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFFB010000049.1 Salmonella enterica strain PNUSAS344088 SAMN34381840-rid17830613.guided.33, whole genome shotgun sequence	12771..13208	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	95.65	138 / 142	ABNFFB010000025.1 Salmonella enterica strain PNUSAS344088 SAMN34381840-rid17830613.denovo.25, whole genome shotgun sequence	17345..17480																																																																	
GCA_032269845.1_PDT001708301.1_genomic.fna	Salmonella_enterica	0.5203	301.703 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFFD010000003.1 Salmonella enterica strain PNUSAS344121 SAMN34381830-rid17828723.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFFD010000032.1 Salmonella enterica strain PNUSAS344121 SAMN34381830-rid17828723.denovo.34, whole genome shotgun sequence	7465..8301	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFFD010000032.1 Salmonella enterica strain PNUSAS344121 SAMN34381830-rid17828723.denovo.34, whole genome shotgun sequence	8301..9104	Streptomycin	AF321551	aac(6')-Iaa	99.77	438/438	ABNFFD010000056.1 Salmonella enterica strain PNUSAS344121 SAMN34381830-rid17828723.guided.32, whole genome shotgun sequence	2267..2704	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFFD010000057.1 Salmonella enterica strain PNUSAS344121 SAMN34381830-rid17828723.guided.35, whole genome shotgun sequence	13267..14103	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFFD010000057.1 Salmonella enterica strain PNUSAS344121 SAMN34381830-rid17828723.guided.35, whole genome shotgun sequence	12464..13267	Streptomycin	AF321551	floR	98.19	1214/1215	ABNFFD010000032.1 Salmonella enterica strain PNUSAS344121 SAMN34381830-rid17828723.denovo.34, whole genome shotgun sequence	3116..4329	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFFD010000059.1 Salmonella enterica strain PNUSAS344121 SAMN34381830-rid17828723.guided.43, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNFFD010000032.1 Salmonella enterica strain PNUSAS344121 SAMN34381830-rid17828723.denovo.34, whole genome shotgun sequence	9165..9980	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFFD010000057.1 Salmonella enterica strain PNUSAS344121 SAMN34381830-rid17828723.guided.35, whole genome shotgun sequence	11588..12403	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNFFD010000032.1 Salmonella enterica strain PNUSAS344121 SAMN34381830-rid17828723.denovo.34, whole genome shotgun sequence	4930..6204	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNFFD010000057.1 Salmonella enterica strain PNUSAS344121 SAMN34381830-rid17828723.guided.35, whole genome shotgun sequence	15364..16638	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncC	100	417 / 417	ABNFFD010000030.1 Salmonella enterica strain PNUSAS344121 SAMN34381830-rid17828723.denovo.31, whole genome shotgun sequence	17258..17674	enterobacteriales	IncFIB(S)	100	643 / 643	ABNFFD010000020.1 Salmonella enterica strain PNUSAS344121 SAMN34381830-rid17828723.denovo.20, whole genome shotgun sequence	20704..21346		enterobacteriales	IncFII(S)	100	262 / 262	ABNFFD010000020.1 Salmonella enterica strain PNUSAS344121 SAMN34381830-rid17828723.denovo.20, whole genome shotgun sequence	36431..36692																																									avrA	ABNFFD010000001.1	446747..447615	100	869	0						
GCA_032269865.1_PDT001708302.1_genomic.fna	Salmonella_enterica	0.5218	376.347 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFFC010000004.1 Salmonella enterica strain PNUSAS344082 SAMN34381836-rid17828733.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFFC010000035.1 Salmonella enterica strain PNUSAS344082 SAMN34381836-rid17828733.guided.26, whole genome shotgun sequence	13105..13542	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNFFC010000015.1 Salmonella enterica strain PNUSAS344082 SAMN34381836-rid17828733.denovo.15, whole genome shotgun sequence	44751..45393	enterobacteriales	IncFII(S)	100	262 / 262	ABNFFC010000015.1 Salmonella enterica strain PNUSAS344082 SAMN34381836-rid17828733.denovo.15, whole genome shotgun sequence	29405..29666																																																avrA	ABNFFC010000001.1	446738..447606	100	869	0						
GCA_032269885.1_PDT001708297.1_genomic.fna	Salmonella_enterica	0.522	682.831 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pMET)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNFFF010000001.1 Salmonella enterica strain PNUSAS344087 SAMN34381828-rid17830583.denovo.01, whole genome shotgun sequence	546279..546716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNFFF010000018.1 Salmonella enterica strain PNUSAS344087 SAMN34381828-rid17830583.guided.15, whole genome shotgun sequence	19993..20430	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNFFF010000013.1 Salmonella enterica strain PNUSAS344087 SAMN34381828-rid17830583.denovo.13, whole genome shotgun sequence	18874..19456																																																						avrA	ABNFFF010000004.1	544410..545278	99.425	870	0						
GCA_032269905.1_PDT001708298.1_genomic.fna	Salmonella_enterica	0.5218	363.228 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFFE010000001.1 Salmonella enterica strain PNUSAS344105 SAMN34381842-rid17828713.denovo.01, whole genome shotgun sequence	772111..772548	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFFE010000038.1 Salmonella enterica strain PNUSAS344105 SAMN34381842-rid17828713.guided.21, whole genome shotgun sequence	961..1398	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFFE010000003.1	94079..94948	99.195	870	0						
GCA_032269925.1_PDT001708296.1_genomic.fna	Salmonella_enterica	0.5223	440.654 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_547	2370	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_547	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFFG010000001.1 Salmonella enterica strain PNUSAS344092 SAMN34381823-rid17828703.denovo.01, whole genome shotgun sequence	287549..287986	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFFG010000023.1 Salmonella enterica strain PNUSAS344092 SAMN34381823-rid17828703.guided.18, whole genome shotgun sequence	79..516	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFFG010000008.1	174308..175177	99.195	870	0						
GCA_032269945.1_PDT001708294.1_genomic.fna	Salmonella_enterica	0.5206	670.037 KB	2	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNFFI010000001.1 Salmonella enterica strain PNUSAS344083 SAMN34381824-rid17830563.denovo.01, whole genome shotgun sequence	1329455..1329892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFFI010000006.1 Salmonella enterica strain PNUSAS344083 SAMN34381824-rid17830563.denovo.06, whole genome shotgun sequence	277401..278237	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNFFI010000006.1 Salmonella enterica strain PNUSAS344083 SAMN34381824-rid17830563.denovo.06, whole genome shotgun sequence	278455..279268	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	aph(3'')-Ib	100	804/804	ABNFFI010000006.1 Salmonella enterica strain PNUSAS344083 SAMN34381824-rid17830563.denovo.06, whole genome shotgun sequence	276598..277401	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNFFI010000030.1 Salmonella enterica strain PNUSAS344083 SAMN34381824-rid17830563.guided.19, whole genome shotgun sequence	7939..8775	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNFFI010000030.1 Salmonella enterica strain PNUSAS344083 SAMN34381824-rid17830563.guided.19, whole genome shotgun sequence	8993..9806	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	aph(3'')-Ib	100	804/804	ABNFFI010000030.1 Salmonella enterica strain PNUSAS344083 SAMN34381824-rid17830563.guided.19, whole genome shotgun sequence	7136..7939	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNFFI010000031.1 Salmonella enterica strain PNUSAS344083 SAMN34381824-rid17830563.guided.20, whole genome shotgun sequence	1596..2033	Amikacin, Tobramycin	NC_003197	sul2	99.88	816/816	ABNFFI010000005.1 Salmonella enterica strain PNUSAS344083 SAMN34381824-rid17830563.denovo.05, whole genome shotgun sequence	346212..347027	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNFFI010000028.1 Salmonella enterica strain PNUSAS344083 SAMN34381824-rid17830563.guided.17, whole genome shotgun sequence	11491..12306	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNFFI010000017.1 Salmonella enterica strain PNUSAS344083 SAMN34381824-rid17830563.denovo.21, whole genome shotgun sequence	1194..2399	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNFFI010000032.1 Salmonella enterica strain PNUSAS344083 SAMN34381824-rid17830563.guided.22, whole genome shotgun sequence	2255..3460	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNFFI010000015.1 Salmonella enterica strain PNUSAS344083 SAMN34381824-rid17830563.denovo.15, whole genome shotgun sequence	15755..16288																																																						avrA	ABNFFI010000009.1	94016..94884	99.655	869	0						
GCA_032269965.1_PDT001708295.1_genomic.fna	Salmonella_enterica	0.5211	322.087 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFFH010000001.1 Salmonella enterica strain PNUSAS344096 SAMN34381829-rid17830573.denovo.01, whole genome shotgun sequence	521464..521901	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFFH010000041.1 Salmonella enterica strain PNUSAS344096 SAMN34381829-rid17830573.guided.29, whole genome shotgun sequence	1540..1977	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNFFH010000016.1 Salmonella enterica strain PNUSAS344096 SAMN34381829-rid17830573.denovo.16, whole genome shotgun sequence	48401..49043	enterobacteriales	IncFII(S)	100	262 / 262	ABNFFH010000016.1 Salmonella enterica strain PNUSAS344096 SAMN34381829-rid17830573.denovo.16, whole genome shotgun sequence	64128..64389																																																avrA	ABNFFH010000005.1	174789..175658	99.885	870	0						
GCA_032270005.1_PDT001708290.1_genomic.fna	Salmonella_enterica	0.5232	214.056 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFFK010000001.1 Salmonella enterica strain PNUSAS344913 SAMN34381562-rid17830543.denovo.01, whole genome shotgun sequence	823274..823711	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFFK010000038.1 Salmonella enterica strain PNUSAS344913 SAMN34381562-rid17830543.guided.29, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032270025.1_PDT001708289.1_genomic.fna	Salmonella_enterica	0.521	266.805 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	9	aac(6')-Iaa,aph(3')-IIa,aac(3)-IId,aph(6)-Id,aph(3'')-Ib,aadA2,aph(3')-IIa,aac(6')-Iaa,aac(3)-IId,aph(6)-Id,aph(3'')-Ib,aadA2,blaTEM-1B,blaTEM-1B,floR,floR,tet(B),tet(B)	1	gyrA_p.S83F	5	Col(pHAD28),IncFIB(AP001918),IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFFL010000001.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.denovo.01, whole genome shotgun sequence	458968..459405	Amikacin, Tobramycin	NC_003197	aph(3')-IIa	100	795/795	ABNFFL010000032.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.denovo.33, whole genome shotgun sequence	6046..6840	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	aac(3)-IId	99.88	861/861	ABNFFL010000034.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.denovo.36, whole genome shotgun sequence	12105..12965	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(6)-Id	100	837/837	ABNFFL010000050.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.denovo.57, whole genome shotgun sequence	70..906	Streptomycin	M28829	aph(3'')-Ib	100	775/804	ABNFFL010000050.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.denovo.57, whole genome shotgun sequence	906..1680	Streptomycin	AF321551	aadA2	100	792/792	ABNFFL010000053.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.denovo.61, whole genome shotgun sequence	243..1034	Spectinomycin, Streptomycin	JQ364967	aph(3')-IIa	100	795/795	ABNFFL010000066.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.guided.34, whole genome shotgun sequence	7356..8150	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	aac(6')-Iaa	100	438/438	ABNFFL010000069.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.guided.41, whole genome shotgun sequence	5121..5558	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNFFL010000070.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.guided.44, whole genome shotgun sequence	71..931	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(6)-Id	100	837/837	ABNFFL010000071.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.guided.51, whole genome shotgun sequence	2209..3045	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFFL010000071.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.guided.51, whole genome shotgun sequence	1406..2209	Streptomycin	AF321551	aadA2	100	792/792	ABNFFL010000072.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.guided.60, whole genome shotgun sequence	490..1281	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABNFFL010000034.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.denovo.36, whole genome shotgun sequence	6273..7133	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNFFL010000070.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.guided.44, whole genome shotgun sequence	5903..6763	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.11	1214/1215	ABNFFL010000032.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.denovo.33, whole genome shotgun sequence	11230..12443	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNFFL010000066.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.guided.34, whole genome shotgun sequence	1753..2966	Chloramphenicol, Florfenicol	AF118107	tet(B)	100	1206/1206	ABNFFL010000033.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.denovo.35, whole genome shotgun sequence	12336..13541	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNFFL010000067.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.guided.39, whole genome shotgun sequence	9779..10984	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFFL010000043.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.denovo.49, whole genome shotgun sequence	186..316	enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNFFL010000039.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.denovo.45, whole genome shotgun sequence	2185..2866		enterobacteriales	IncFIB(S)	100	643 / 643	ABNFFL010000028.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.denovo.29, whole genome shotgun sequence	20283..20925		enterobacteriales	IncFII(S)	100	262 / 262	ABNFFL010000028.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.denovo.29, whole genome shotgun sequence	4937..5198		enterobacteriales	IncI(Gamma)	100	137 / 141	ABNFFL010000017.1 Salmonella enterica strain PNUSAS344915 SAMN34381549-rid17830533.denovo.17, whole genome shotgun sequence	15508..15644																											avrA	ABNFFL010000004.1	143587..144456	99.885	870	0						
GCA_032270045.1_PDT001708287.1_genomic.fna	Salmonella_enterica	0.5213	375.87 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFFM010000001.1 Salmonella enterica strain PNUSAS344912 SAMN34381556-rid17830513.denovo.01, whole genome shotgun sequence	815076..815513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFFM010000032.1 Salmonella enterica strain PNUSAS344912 SAMN34381556-rid17830513.guided.26, whole genome shotgun sequence	2168..2605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFFM010000022.1 Salmonella enterica strain PNUSAS344912 SAMN34381556-rid17830513.denovo.22, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNFFM010000023.1 Salmonella enterica strain PNUSAS344912 SAMN34381556-rid17830513.denovo.25, whole genome shotgun sequence	3395..3656																																																avrA	ABNFFM010000008.1	140715..141584	99.54	870	0						
GCA_032270065.1_PDT001708285.1_genomic.fna	Salmonella_enterica	0.5208	314.552 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNFFN010000001.1 Salmonella enterica strain PNUSAS344917 SAMN34381421-rid17830503.denovo.01, whole genome shotgun sequence	168073..168510	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNFFN010000035.1 Salmonella enterica strain PNUSAS344917 SAMN34381421-rid17830503.guided.18, whole genome shotgun sequence	10637..11074	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	97.37	152 / 154	ABNFFN010000025.1 Salmonella enterica strain PNUSAS344917 SAMN34381421-rid17830503.denovo.29, whole genome shotgun sequence	967..1118																																																						avrA	ABNFFN010000002.1	145182..146051	99.31	870	0						
GCA_032270085.1_PDT001708284.1_genomic.fna	Salmonella_enterica	0.5214	515.489 KB	4	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFFO010000002.1 Salmonella enterica strain PNUSAS344870 SAMN34379430-rid17830493.denovo.02, whole genome shotgun sequence	624559..624996	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFFO010000031.1 Salmonella enterica strain PNUSAS344870 SAMN34379430-rid17830493.guided.22, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032270105.1_PDT001708281.1_genomic.fna	Salmonella_enterica	0.522	519.829 KB	4	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFFQ010000001.1 Salmonella enterica strain PNUSAS344852 SAMN34379843-rid17828653.denovo.01, whole genome shotgun sequence	136728..137165	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFFQ010000026.1 Salmonella enterica strain PNUSAS344852 SAMN34379843-rid17828653.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFFQ010000002.1	541530..542396	99.08	870	0						
GCA_032270145.1_PDT001708279.1_genomic.fna	Salmonella_enterica	0.5217	196.372 KB	8	aroC_20,dnaN_4,hemD_23,hisD_14,purE_16,sucA_19,thrA_140	423	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_20	dnaN	100	100	dnaN_4	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_19	thrA	100	100	thrA_140	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFFR010000012.1 Salmonella enterica strain PNUSAS344871 SAMN34379435-rid17830463.denovo.12, whole genome shotgun sequence	37880..38317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFFR010000055.1 Salmonella enterica strain PNUSAS344871 SAMN34379435-rid17830463.guided.35, whole genome shotgun sequence	10368..10805	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032270165.1_PDT001708282.1_genomic.fna	Salmonella_enterica	0.5189	379.998 KB	5	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	7	aac(6')-Iaa,aadA22,aac(6')-Iaa,aadA22,blaTEM-1B,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),qnrS13,qnrS13,dfrA14,dfrA14	1	parC_p.T57S	2	IncHI2,IncHI2A	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNFFP010000001.1 Salmonella enterica strain PNUSAS344850 SAMN34379844-rid17828663.denovo.01, whole genome shotgun sequence	220702..221139	Amikacin, Tobramycin	NC_003197	aadA22	100	792/792	ABNFFP010000029.1 Salmonella enterica strain PNUSAS344850 SAMN34379844-rid17828663.denovo.34, whole genome shotgun sequence	866..1657	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	99.32	438/438	ABNFFP010000037.1 Salmonella enterica strain PNUSAS344850 SAMN34379844-rid17828663.guided.19, whole genome shotgun sequence	24330..24767	Amikacin, Tobramycin	NC_003197	aadA22	100	792/792	ABNFFP010000043.1 Salmonella enterica strain PNUSAS344850 SAMN34379844-rid17828663.guided.37, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaTEM-1B	100	861/861	ABNFFP010000030.1 Salmonella enterica strain PNUSAS344850 SAMN34379844-rid17828663.denovo.35, whole genome shotgun sequence	758..1618	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNFFP010000042.1 Salmonella enterica strain PNUSAS344850 SAMN34379844-rid17828663.guided.36, whole genome shotgun sequence	1011..1871	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNFFP010000025.1 Salmonella enterica strain PNUSAS344850 SAMN34379844-rid17828663.denovo.29, whole genome shotgun sequence	69..974	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNFFP010000029.1 Salmonella enterica strain PNUSAS344850 SAMN34379844-rid17828663.denovo.34, whole genome shotgun sequence	1789..2610	Lincomycin	EU118119	mph(A)	100	906/906	ABNFFP010000041.1 Salmonella enterica strain PNUSAS344850 SAMN34379844-rid17828663.guided.32, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNFFP010000043.1 Salmonella enterica strain PNUSAS344850 SAMN34379844-rid17828663.guided.37, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	qnrS13	100	657/657	ABNFFP010000022.1 Salmonella enterica strain PNUSAS344850 SAMN34379844-rid17828663.denovo.25, whole genome shotgun sequence	13998..14654	Ciprofloxacin	LUYD01000008	qnrS13	100	657/657	ABNFFP010000040.1 Salmonella enterica strain PNUSAS344850 SAMN34379844-rid17828663.guided.28, whole genome shotgun sequence	1458..2114	Ciprofloxacin	LUYD01000008	dfrA14	100	474/474	ABNFFP010000025.1 Salmonella enterica strain PNUSAS344850 SAMN34379844-rid17828663.denovo.29, whole genome shotgun sequence	4680..5153	Trimethoprim	KF921535	dfrA14	100	474/474	ABNFFP010000044.1 Salmonella enterica strain PNUSAS344850 SAMN34379844-rid17828663.guided.39, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNFFP010000012.1 Salmonella enterica strain PNUSAS344850 SAMN34379844-rid17828663.denovo.12, whole genome shotgun sequence	118798..119124	enterobacteriales	IncHI2A	99.52	630 / 630	ABNFFP010000012.1 Salmonella enterica strain PNUSAS344850 SAMN34379844-rid17828663.denovo.12, whole genome shotgun sequence	133986..134615																																																avrA	ABNFFP010000006.1	181801..182670	99.77	870	0						
GCA_032270265.1_PDT001707716.1_genomic.fna	Salmonella_enterica	0.5209	134.918 KB	12	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	-:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	-	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:m,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFFY010000008.1 Salmonella enterica subsp. enterica serovar Oranienburg strain FSIS32309405 SAMN34411732-rid17823183.denovo.08, whole genome shotgun sequence	20870..21307	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFFY010000071.1 Salmonella enterica subsp. enterica serovar Oranienburg strain FSIS32309405 SAMN34411732-rid17823183.guided.49, whole genome shotgun sequence	13983..14420	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032270305.1_PDT001707714.1_genomic.fna	Salmonella_enterica	0.5222	114.191 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFFZ010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309401 SAMN34411725-rid17823163.denovo.003, whole genome shotgun sequence	176035..176472	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFFZ010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309401 SAMN34411725-rid17823163.denovo.042, whole genome shotgun sequence	22684..23475	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFFZ010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309401 SAMN34411725-rid17823163.denovo.042, whole genome shotgun sequence	22684..23475	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFFZ010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309401 SAMN34411725-rid17823163.guided.058, whole genome shotgun sequence	14917..15354	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFFZ010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309401 SAMN34411725-rid17823163.guided.096, whole genome shotgun sequence	843..1634	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFFZ010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309401 SAMN34411725-rid17823163.guided.096, whole genome shotgun sequence	843..1634	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNFFZ010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309401 SAMN34411725-rid17823163.denovo.042, whole genome shotgun sequence	21340..22179	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFFZ010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309401 SAMN34411725-rid17823163.guided.099, whole genome shotgun sequence	372..1211	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFFZ010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309401 SAMN34411725-rid17823163.denovo.042, whole genome shotgun sequence	7624..8823	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFFZ010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309401 SAMN34411725-rid17823163.guided.069, whole genome shotgun sequence	5090..6289	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFFZ010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309401 SAMN34411725-rid17823163.denovo.073, whole genome shotgun sequence	5351..5910																																																						avrA	ABNFFZ010000013.1	105138..106007	99.655	870	0						
GCA_032270365.1_PDT001707698.1_genomic.fna	Salmonella_enterica	0.523	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFGD010000001.1 Salmonella enterica strain FDA1199114-C001-001 SAMN34410587-rid17823033.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFGD010000038.1 Salmonella enterica strain FDA1199114-C001-001 SAMN34410587-rid17823033.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFGD010000002.1	39430..40299	99.655	870	0						
GCA_032270425.1_PDT001707712.1_genomic.fna	Salmonella_enterica	0.5208	125.811 KB	12	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFGA010000001.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS32309410 SAMN34411716-rid17823143.denovo.01, whole genome shotgun sequence	251306..251743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFGA010000069.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS32309410 SAMN34411716-rid17823143.guided.40, whole genome shotgun sequence	16062..16499	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032270585.1_PDT001707711.1_genomic.fna	Salmonella_enterica	0.5203	102.213 KB	16	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFGB010000016.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309408 SAMN34411714-rid17823133.denovo.016, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFGB010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309408 SAMN34411714-rid17823133.denovo.068, whole genome shotgun sequence	5751..6587	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNFGB010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309408 SAMN34411714-rid17823133.denovo.068, whole genome shotgun sequence	6587..7390	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNFGB010000129.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309408 SAMN34411714-rid17823133.guided.047, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFGB010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309408 SAMN34411714-rid17823133.guided.082, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNFGB010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309408 SAMN34411714-rid17823133.guided.082, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNFGB010000086.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309408 SAMN34411714-rid17823133.denovo.091, whole genome shotgun sequence	2279..3484	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNFGB010000132.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309408 SAMN34411714-rid17823133.guided.087, whole genome shotgun sequence	2311..3516	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNFGB010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309408 SAMN34411714-rid17823133.denovo.054, whole genome shotgun sequence	17316..17997	enterobacteriales	IncFII	96.95	262 / 261	ABNFGB010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309408 SAMN34411714-rid17823133.denovo.068, whole genome shotgun sequence	4867..5128		enterobacteriales	IncFII	96.95	262 / 261	ABNFGB010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309408 SAMN34411714-rid17823133.guided.082, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNFGB010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309408 SAMN34411714-rid17823133.denovo.077, whole genome shotgun sequence	4194..4335		enterobacteriales	IncX1	100	373 / 373	ABNFGB010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309408 SAMN34411714-rid17823133.denovo.089, whole genome shotgun sequence	2153..2525																											avrA	ABNFGB010000037.1	39614..40483	99.655	870	0						
GCA_032270945.1_PDT001707713.1_genomic.fna	Salmonella_enterica	0.5232	96.756 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFGT010000018.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309402 SAMN34411728-rid17823153.denovo.018, whole genome shotgun sequence	83738..84175	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNFGT010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309402 SAMN34411728-rid17823153.denovo.096, whole genome shotgun sequence	1053..2078	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFGT010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309402 SAMN34411728-rid17823153.denovo.096, whole genome shotgun sequence	48..824	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNFGT010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309402 SAMN34411728-rid17823153.guided.063, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNFGT010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309402 SAMN34411728-rid17823153.guided.104, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFGT010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309402 SAMN34411728-rid17823153.guided.104, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNFGT010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309402 SAMN34411728-rid17823153.denovo.120, whole genome shotgun sequence	1087..1962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNFGT010000136.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309402 SAMN34411728-rid17823153.guided.122, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNFGT010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309402 SAMN34411728-rid17823153.denovo.093, whole genome shotgun sequence	3207..4420	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFGT010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309402 SAMN34411728-rid17823153.guided.098, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	dfrA14	100	474/474	ABNFGT010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309402 SAMN34411728-rid17823153.denovo.116, whole genome shotgun sequence	41..514	Trimethoprim	AF393510	dfrA14	100	474/474	ABNFGT010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309402 SAMN34411728-rid17823153.guided.114, whole genome shotgun sequence	84..557	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFGT010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309402 SAMN34411728-rid17823153.denovo.092, whole genome shotgun sequence	2138..2697																																																						avrA	ABNFGT010000013.1	105086..105955	99.655	870	0						
GCA_032270965.1_PDT001707715.1_genomic.fna	Salmonella_enterica	0.5234	75.423 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFGS010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309403 SAMN34411730-rid17823173.denovo.003, whole genome shotgun sequence	38024..38461	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFGS010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309403 SAMN34411730-rid17823173.denovo.074, whole genome shotgun sequence	18447..19238	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFGS010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309403 SAMN34411730-rid17823173.denovo.074, whole genome shotgun sequence	18447..19238	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFGS010000132.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309403 SAMN34411730-rid17823173.guided.065, whole genome shotgun sequence	10094..10531	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFGS010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309403 SAMN34411730-rid17823173.guided.103, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFGS010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309403 SAMN34411730-rid17823173.guided.103, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNFGS010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309403 SAMN34411730-rid17823173.denovo.074, whole genome shotgun sequence	17103..17942	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFGS010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309403 SAMN34411730-rid17823173.guided.103, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFGS010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309403 SAMN34411730-rid17823173.denovo.074, whole genome shotgun sequence	3387..4586	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFGS010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309403 SAMN34411730-rid17823173.guided.091, whole genome shotgun sequence	7833..9032	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFGS010000105.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309403 SAMN34411730-rid17823173.denovo.110, whole genome shotgun sequence	2149..2708																																																						avrA	ABNFGS010000021.1	39657..40526	99.655	870	0						
GCA_032271005.1_PDT001707709.1_genomic.fna	Salmonella_enterica	0.522	155.956 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFGV010000006.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309407 SAMN34411628-rid17823113.denovo.06, whole genome shotgun sequence	175718..176155	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFGV010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309407 SAMN34411628-rid17823113.denovo.41, whole genome shotgun sequence	22833..23624	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFGV010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309407 SAMN34411628-rid17823113.denovo.41, whole genome shotgun sequence	22833..23624	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFGV010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309407 SAMN34411628-rid17823113.guided.28, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFGV010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309407 SAMN34411628-rid17823113.guided.57, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFGV010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309407 SAMN34411628-rid17823113.guided.57, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNFGV010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309407 SAMN34411628-rid17823113.denovo.41, whole genome shotgun sequence	21489..22328	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFGV010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309407 SAMN34411628-rid17823113.guided.57, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFGV010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309407 SAMN34411628-rid17823113.denovo.41, whole genome shotgun sequence	7773..8972	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFGV010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309407 SAMN34411628-rid17823113.guided.51, whole genome shotgun sequence	9626..10825	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFGV010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309407 SAMN34411628-rid17823113.denovo.45, whole genome shotgun sequence	2154..2713																																																						avrA	ABNFGV010000005.1	149586..150455	99.655	870	0						
GCA_032271025.1_PDT001707708.1_genomic.fna	Salmonella_enterica	0.5206	57.413 KB	27	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNFGW010000035.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32309406 SAMN34411627-rid17823103.denovo.035, whole genome shotgun sequence	20892..21329	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNFGW010000179.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32309406 SAMN34411627-rid17823103.guided.092, whole genome shotgun sequence	2337..2774	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNFGW010000117.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32309406 SAMN34411627-rid17823103.denovo.120, whole genome shotgun sequence	2209..2339	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNFGW010000120.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32309406 SAMN34411627-rid17823103.denovo.123, whole genome shotgun sequence	557..687		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNFGW010000114.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32309406 SAMN34411627-rid17823103.denovo.117, whole genome shotgun sequence	4090..4623																																									avrA	ABNFGW010000047.1	39350..40219	99.54	870	0						
GCA_032271045.1_PDT001707707.1_genomic.fna	Salmonella_enterica	0.5227	79.1 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFGX010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309399 SAMN34411597-rid17823093.denovo.001, whole genome shotgun sequence	15471..15908	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFGX010000135.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309399 SAMN34411597-rid17823093.guided.039, whole genome shotgun sequence	30259..30696	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNFGX010000101.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309399 SAMN34411597-rid17823093.denovo.104, whole genome shotgun sequence	2052..2694	enterobacteriales	IncFII(S)	100	262 / 262	ABNFGX010000078.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309399 SAMN34411597-rid17823093.denovo.081, whole genome shotgun sequence	12570..12831																																																avrA	ABNFGX010000008.1	106575..107443	100	869	0						
GCA_032271065.1_PDT001707705.1_genomic.fna	Salmonella_enterica	0.5227	90.011 KB	17	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFGZ010000024.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309374 SAMN34411469-rid17823073.denovo.024, whole genome shotgun sequence	52328..52765	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFGZ010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309374 SAMN34411469-rid17823073.denovo.061, whole genome shotgun sequence	18463..19254	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFGZ010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309374 SAMN34411469-rid17823073.denovo.061, whole genome shotgun sequence	18463..19254	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFGZ010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309374 SAMN34411469-rid17823073.guided.064, whole genome shotgun sequence	8128..8565	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFGZ010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309374 SAMN34411469-rid17823073.guided.066, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFGZ010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309374 SAMN34411469-rid17823073.guided.066, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNFGZ010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309374 SAMN34411469-rid17823073.denovo.061, whole genome shotgun sequence	17119..17958	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFGZ010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309374 SAMN34411469-rid17823073.guided.066, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFGZ010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309374 SAMN34411469-rid17823073.denovo.061, whole genome shotgun sequence	3403..4602	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFGZ010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309374 SAMN34411469-rid17823073.guided.066, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFGZ010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309374 SAMN34411469-rid17823073.denovo.083, whole genome shotgun sequence	5351..5910																																																						avrA	ABNFGZ010000040.1	39536..40405	99.655	870	0						
GCA_032271085.1_PDT001707710.1_genomic.fna	Salmonella_enterica	0.522	63.588 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		1	ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFGU010000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309409 SAMN34411715-rid17823123.denovo.010, whole genome shotgun sequence	11360..11797	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNFGU010000075.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309409 SAMN34411715-rid17823123.denovo.078, whole genome shotgun sequence	12506..13408	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNFGU010000075.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309409 SAMN34411715-rid17823123.denovo.078, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNFGU010000142.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309409 SAMN34411715-rid17823123.guided.041, whole genome shotgun sequence	30278..30715	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNFGU010000146.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309409 SAMN34411715-rid17823123.guided.108, whole genome shotgun sequence	37..939	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNFGU010000147.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309409 SAMN34411715-rid17823123.guided.122, whole genome shotgun sequence	2402..3193	Spectinomycin, Streptomycin	JQ414041	sul2	100	816/816	ABNFGU010000028.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309409 SAMN34411715-rid17823123.denovo.028, whole genome shotgun sequence	5050..5865	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNFGU010000075.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309409 SAMN34411715-rid17823123.denovo.078, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul2	100	816/816	ABNFGU010000141.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309409 SAMN34411715-rid17823123.guided.029, whole genome shotgun sequence	49747..50562	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNFGU010000145.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309409 SAMN34411715-rid17823123.guided.106, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABNFGU010000028.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309409 SAMN34411715-rid17823123.denovo.028, whole genome shotgun sequence	1674..2873	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNFGU010000123.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309409 SAMN34411715-rid17823123.denovo.131, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABNFGU010000141.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309409 SAMN34411715-rid17823123.guided.029, whole genome shotgun sequence	52739..53938	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNFGU010000148.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309409 SAMN34411715-rid17823123.guided.129, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	ColpVC	98.96	193 / 193	ABNFGU010000122.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309409 SAMN34411715-rid17823123.denovo.130, whole genome shotgun sequence	805..997																																																						avrA	ABNFGU010000003.1	106336..107205	99.885	870	0						
GCA_032271105.1_PDT001707704.1_genomic.fna	Salmonella_enterica	0.5222	79.648 KB	21	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	2	aac(6')-Iaa,aac(6')-Iaa,tet(C),tet(C)	1	parC_p.T57S	2	Col(pHAD28),ColE10	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNFHA010000026.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309373 SAMN34411468-rid17823063.denovo.026, whole genome shotgun sequence	13063..13500	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNFHA010000138.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309373 SAMN34411468-rid17823063.guided.058, whole genome shotgun sequence	16063..16500	Amikacin, Tobramycin	NC_003197	tet(C)	99.83	1191/1191	ABNFHA010000085.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309373 SAMN34411468-rid17823063.denovo.088, whole genome shotgun sequence	1430..2620	Doxycycline, Tetracycline	AF055345	tet(C)	99.83	1191/1191	ABNFHA010000141.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309373 SAMN34411468-rid17823063.guided.096, whole genome shotgun sequence	1469..2659	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNFHA010000096.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309373 SAMN34411468-rid17823063.denovo.100, whole genome shotgun sequence	557..687	enterobacteriales	ColE10	100	177 / 177	ABNFHA010000085.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309373 SAMN34411468-rid17823063.denovo.088, whole genome shotgun sequence	7394..7570																																																avrA	ABNFHA010000037.1	43590..44459	99.54	870	0						
GCA_032271125.1_PDT001707702.1_genomic.fna	Salmonella_enterica	0.5223	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFHC010000001.1 Salmonella enterica strain FDA1199114-C001-025 SAMN34410591-rid17821443.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFHC010000036.1 Salmonella enterica strain FDA1199114-C001-025 SAMN34410591-rid17821443.guided.13, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFHC010000002.1	39430..40299	99.655	870	0						
GCA_032271145.1_PDT001707706.1_genomic.fna	Salmonella_enterica	0.5227	100.594 KB	16	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNFGY010000026.1 Salmonella enterica subsp. enterica serovar Litchfield strain FSIS32309372 SAMN34411470-rid17823083.denovo.26, whole genome shotgun sequence	52451..52888	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNFGY010000090.1 Salmonella enterica subsp. enterica serovar Litchfield strain FSIS32309372 SAMN34411470-rid17823083.guided.71, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFGY010000037.1	43273..44164	97.309	892	0						
GCA_032271165.1_PDT001707701.1_genomic.fna	Salmonella_enterica	0.5231	328.611 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFHD010000001.1 Salmonella enterica strain FDA1199114-C001-009 SAMN34410592-rid17823043.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFHD010000035.1 Salmonella enterica strain FDA1199114-C001-009 SAMN34410592-rid17823043.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFHD010000002.1	149551..150420	99.655	870	0						
GCA_032271185.1_PDT001707700.1_genomic.fna	Salmonella_enterica	0.5223	238.214 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFHF010000001.1 Salmonella enterica strain FDA1199114-C001-017 SAMN34410589-rid17821433.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFHF010000038.1 Salmonella enterica strain FDA1199114-C001-017 SAMN34410589-rid17821433.guided.19, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFHF010000006.1	39526..40395	99.655	870	0						
GCA_032271205.1_PDT001707703.1_genomic.fna	Salmonella_enterica	0.5209	91.108 KB	19	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNFHB010000041.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309371 SAMN34411467-rid17823053.denovo.041, whole genome shotgun sequence	11313..11750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNFHB010000118.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309371 SAMN34411467-rid17823053.guided.054, whole genome shotgun sequence	15393..15830	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFHB010000093.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309371 SAMN34411467-rid17823053.denovo.096, whole genome shotgun sequence	2420..2550	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFHB010000106.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309371 SAMN34411467-rid17823053.denovo.109, whole genome shotgun sequence	581..711																																																avrA	ABNFHB010000023.1	83996..84865	99.54	870	0						
GCA_032272045.1_PDT001707638.1_genomic.fna	Salmonella_enterica	0.5226	50.555 KB	32	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFIU010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321511 SAMN34407542-rid17821113.denovo.067, whole genome shotgun sequence	12474..12911	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFIU010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321511 SAMN34407542-rid17821113.denovo.073, whole genome shotgun sequence	22673..23464	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFIU010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321511 SAMN34407542-rid17821113.denovo.073, whole genome shotgun sequence	22673..23464	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFIU010000195.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321511 SAMN34407542-rid17821113.guided.125, whole genome shotgun sequence	8799..9236	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFIU010000196.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321511 SAMN34407542-rid17821113.guided.143, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFIU010000196.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321511 SAMN34407542-rid17821113.guided.143, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNFIU010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321511 SAMN34407542-rid17821113.denovo.073, whole genome shotgun sequence	21329..22168	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFIU010000196.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321511 SAMN34407542-rid17821113.guided.143, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFIU010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321511 SAMN34407542-rid17821113.denovo.073, whole genome shotgun sequence	7613..8812	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFIU010000194.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321511 SAMN34407542-rid17821113.guided.110, whole genome shotgun sequence	10937..12136	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFIU010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321511 SAMN34407542-rid17821113.denovo.131, whole genome shotgun sequence	5625..6184	enterobacteriales	IncX1	98.93	374 / 374	ABNFIU010000182.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321511 SAMN34407542-rid17821113.denovo.187, whole genome shotgun sequence	205..578																																																avrA	ABNFIU010000011.1	79228..80097	99.655	870	0						
GCA_032272085.1_PDT001707637.1_genomic.fna	Salmonella_enterica	0.5215	81.346 KB	20	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	-:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	-	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,s,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFIV010000004.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12321484 SAMN34406699-rid17821103.denovo.004, whole genome shotgun sequence	13078..13515	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFIV010000124.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12321484 SAMN34406699-rid17821103.guided.078, whole genome shotgun sequence	10063..10500	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFIV010000015.1	82854..83723	98.966	870	0						
GCA_032272105.1_PDT001707636.1_genomic.fna	Salmonella_enterica	0.523	58.92 KB	28	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFIW010000008.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321516 SAMN34407549-rid17822743.denovo.008, whole genome shotgun sequence	48292..48729	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFIW010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321516 SAMN34407549-rid17822743.denovo.096, whole genome shotgun sequence	11982..12773	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFIW010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321516 SAMN34407549-rid17822743.denovo.096, whole genome shotgun sequence	11982..12773	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNFIW010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321516 SAMN34407549-rid17822743.guided.095, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFIW010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321516 SAMN34407549-rid17822743.guided.095, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFIW010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321516 SAMN34407549-rid17822743.guided.101, whole genome shotgun sequence	9761..10198	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNFIW010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321516 SAMN34407549-rid17822743.denovo.096, whole genome shotgun sequence	10638..11477	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFIW010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321516 SAMN34407549-rid17822743.guided.095, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFIW010000103.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321516 SAMN34407549-rid17822743.denovo.108, whole genome shotgun sequence	1829..3028	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFIW010000165.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321516 SAMN34407549-rid17822743.guided.107, whole genome shotgun sequence	1821..3020	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFIW010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321516 SAMN34407549-rid17822743.denovo.103, whole genome shotgun sequence	8648..9207																																																						avrA	ABNFIW010000015.1	81424..82293	99.655	870	0						
GCA_032272125.1_PDT001707635.1_genomic.fna	Salmonella_enterica	0.5235	49.23 KB	33	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFIX010000002.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS12321519 SAMN34407552-rid17821093.denovo.002, whole genome shotgun sequence	12358..12795	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFIX010000182.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS12321519 SAMN34407552-rid17821093.guided.104, whole genome shotgun sequence	2009..2446	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032272165.1_PDT001707634.1_genomic.fna	Salmonella_enterica	0.5223	72.976 KB	22	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFIY010000048.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321508 SAMN34406702-rid17821083.denovo.049, whole genome shotgun sequence	17220..17657	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFIY010000140.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321508 SAMN34406702-rid17821083.guided.048, whole genome shotgun sequence	15469..15906	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFIY010000088.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321508 SAMN34406702-rid17821083.denovo.090, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABNFIY010000093.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321508 SAMN34406702-rid17821083.denovo.095, whole genome shotgun sequence	3428..3689																																																avrA	ABNFIY010000054.1	25039..25908	99.54	870	0						
GCA_032272185.1_PDT001707630.1_genomic.fna	Salmonella_enterica	0.5238	74.71 KB	22	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNFJA010000004.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12321520 SAMN34407553-rid17822713.denovo.004, whole genome shotgun sequence	52554..52991	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFJA010000093.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12321520 SAMN34407553-rid17822713.denovo.096, whole genome shotgun sequence	548..1384	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFJA010000093.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12321520 SAMN34407553-rid17822713.denovo.096, whole genome shotgun sequence	1384..2187	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	ABNFJA010000146.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12321520 SAMN34407553-rid17822713.guided.052, whole genome shotgun sequence	15592..16029	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFJA010000152.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12321520 SAMN34407553-rid17822713.guided.121, whole genome shotgun sequence	1827..2663	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFJA010000152.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12321520 SAMN34407553-rid17822713.guided.121, whole genome shotgun sequence	1024..1827	Streptomycin	AF321551	blaTEM-1A	100	861/861	ABNFJA010000093.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12321520 SAMN34407553-rid17822713.denovo.096, whole genome shotgun sequence	3225..4085	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNFJA010000150.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12321520 SAMN34407553-rid17822713.guided.110, whole genome shotgun sequence	3981..4841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	ABNFJA010000090.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12321520 SAMN34407553-rid17822713.denovo.093, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFJA010000151.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12321520 SAMN34407553-rid17822713.guided.117, whole genome shotgun sequence	2394..3607	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNFJA010000093.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12321520 SAMN34407553-rid17822713.denovo.096, whole genome shotgun sequence	2248..3063	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFJA010000152.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12321520 SAMN34407553-rid17822713.guided.121, whole genome shotgun sequence	148..963	Sulfamethoxazole	AY034138	tet(A)	100	1226/1275	ABNFJA010000093.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12321520 SAMN34407553-rid17822713.denovo.096, whole genome shotgun sequence	8738..9963	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	ABNFJA010000149.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12321520 SAMN34407553-rid17822713.guided.106, whole genome shotgun sequence	788..1987	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABNFJA010000153.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12321520 SAMN34407553-rid17822713.guided.131, whole genome shotgun sequence	713..1987	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNFJA010000097.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12321520 SAMN34407553-rid17822713.denovo.100, whole genome shotgun sequence	8402..8652																																																						avrA	ABNFJA010000038.1	43683..44552	99.54	870	0						
GCA_032272205.1_PDT001707628.1_genomic.fna	Salmonella_enterica	0.5221	61.47 KB	27	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFJD010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321515 SAMN34407550-rid17821053.denovo.004, whole genome shotgun sequence	20234..20671	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFJD010000167.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321515 SAMN34407550-rid17821053.guided.084, whole genome shotgun sequence	2775..3212	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNFJD010000088.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321515 SAMN34407550-rid17821053.denovo.091, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNFJD010000112.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321515 SAMN34407550-rid17821053.denovo.115, whole genome shotgun sequence	3407..3668		enterobacteriales	IncX1	98.93	374 / 374	ABNFJD010000116.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321515 SAMN34407550-rid17821053.denovo.119, whole genome shotgun sequence	821..1194																																									avrA	ABNFJD010000023.1	61650..62519	99.54	870	0						
GCA_032272225.1_PDT001707625.1_genomic.fna	Salmonella_enterica	0.5223	73.188 KB	24	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFJF010000030.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321512 SAMN34407545-rid17821033.denovo.030, whole genome shotgun sequence	11320..11757	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFJF010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321512 SAMN34407545-rid17821033.denovo.048, whole genome shotgun sequence	1311..2102	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFJF010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321512 SAMN34407545-rid17821033.denovo.048, whole genome shotgun sequence	1311..2102	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFJF010000136.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321512 SAMN34407545-rid17821033.guided.070, whole genome shotgun sequence	8080..8517	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFJF010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321512 SAMN34407545-rid17821033.guided.100, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFJF010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321512 SAMN34407545-rid17821033.guided.100, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNFJF010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321512 SAMN34407545-rid17821033.denovo.048, whole genome shotgun sequence	2607..3446	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFJF010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321512 SAMN34407545-rid17821033.guided.100, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFJF010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321512 SAMN34407545-rid17821033.denovo.048, whole genome shotgun sequence	15963..17162	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFJF010000139.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321512 SAMN34407545-rid17821033.guided.095, whole genome shotgun sequence	1908..3107	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNFJF010000105.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321512 SAMN34407545-rid17821033.denovo.110, whole genome shotgun sequence	552..1025	Trimethoprim	AF393510	dfrA14	100	474/474	ABNFJF010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321512 SAMN34407545-rid17821033.guided.122, whole genome shotgun sequence	574..1047	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFJF010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321512 SAMN34407545-rid17821033.denovo.082, whole genome shotgun sequence	13998..14557																																																						avrA	ABNFJF010000002.1	81701..82570	99.655	870	0						
GCA_032272245.1_PDT001707629.1_genomic.fna	Salmonella_enterica	0.5227	98.348 KB	16	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFJC010000013.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321517 SAMN34407548-rid17821063.denovo.13, whole genome shotgun sequence	13050..13487	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFJC010000068.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321517 SAMN34407548-rid17821063.denovo.71, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFJC010000068.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321517 SAMN34407548-rid17821063.denovo.71, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFJC010000068.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321517 SAMN34407548-rid17821063.denovo.71, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFJC010000068.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321517 SAMN34407548-rid17821063.denovo.71, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFJC010000068.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321517 SAMN34407548-rid17821063.denovo.71, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNFJC010000087.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321517 SAMN34407548-rid17821063.guided.48, whole genome shotgun sequence	14164..14601	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFJC010000090.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321517 SAMN34407548-rid17821063.guided.75, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFJC010000090.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321517 SAMN34407548-rid17821063.guided.75, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFJC010000090.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321517 SAMN34407548-rid17821063.guided.75, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFJC010000090.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321517 SAMN34407548-rid17821063.guided.75, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFJC010000090.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321517 SAMN34407548-rid17821063.guided.75, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNFJC010000069.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321517 SAMN34407548-rid17821063.denovo.72, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFJC010000091.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321517 SAMN34407548-rid17821063.guided.77, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNFJC010000076.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321517 SAMN34407548-rid17821063.denovo.81, whole genome shotgun sequence	805..997																																																						avrA	ABNFJC010000006.1	61246..62115	99.655	870	0						
GCA_032272285.1_PDT001707623.1_genomic.fna	Salmonella_enterica	0.5227	79.793 KB	20	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFJH010000024.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS12321510 SAMN34407541-rid17821013.denovo.024, whole genome shotgun sequence	52344..52781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFJH010000117.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS12321510 SAMN34407541-rid17821013.guided.066, whole genome shotgun sequence	18088..18525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	ABNFJH010000099.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS12321510 SAMN34407541-rid17821013.denovo.101, whole genome shotgun sequence	1566..1675																																																																	
GCA_032272305.1_PDT001707624.1_genomic.fna	Salmonella_enterica	0.5223	92.339 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFJG010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.denovo.001, whole genome shotgun sequence	175685..176122	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFJG010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.denovo.055, whole genome shotgun sequence	22812..23603	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFJG010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.denovo.055, whole genome shotgun sequence	22812..23603	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFJG010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.denovo.095, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFJG010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.denovo.095, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNFJG010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.guided.048, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFJG010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.guided.054, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFJG010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.guided.054, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFJG010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.guided.094, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFJG010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.guided.094, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNFJG010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.denovo.086, whole genome shotgun sequence	3787..5000	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFJG010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.guided.091, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNFJG010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.denovo.055, whole genome shotgun sequence	21468..22307	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFJG010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.guided.054, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFJG010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.denovo.055, whole genome shotgun sequence	7752..8951	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFJG010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.guided.054, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNFJG010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.denovo.098, whole genome shotgun sequence	70..543	Trimethoprim	AF393510	dfrA14	100	474/474	ABNFJG010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.guided.101, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFJG010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321513 SAMN34407539-rid17821023.denovo.069, whole genome shotgun sequence	9109..9668																																																						avrA	ABNFJG010000021.1	83972..84841	99.655	870	0						
GCA_032274215.1_PDT001707414.1_genomic.fna	Salmonella_enterica	0.5232	38.174 KB	38	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFMF010000069.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12321440 SAMN34403604-rid17819893.denovo.070, whole genome shotgun sequence	11322..11759	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFMF010000222.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12321440 SAMN34403604-rid17819893.guided.110, whole genome shotgun sequence	14179..14616	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFMF010000030.1	43465..44334	99.425	870	0						
GCA_032274245.1_PDT001707413.1_genomic.fna	Salmonella_enterica	0.5217	57.844 KB	24	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	-:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	-	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNFMG010000052.1 Salmonella enterica subsp. enterica serovar Rissen strain FSIS12321444 SAMN34403602-rid17821733.denovo.055, whole genome shotgun sequence	14148..14585	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNFMG010000158.1 Salmonella enterica subsp. enterica serovar Rissen strain FSIS12321444 SAMN34403602-rid17821733.guided.054, whole genome shotgun sequence	14222..14659	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNFMG010000118.1 Salmonella enterica subsp. enterica serovar Rissen strain FSIS12321444 SAMN34403602-rid17821733.denovo.121, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFMG010000159.1 Salmonella enterica subsp. enterica serovar Rissen strain FSIS12321444 SAMN34403602-rid17821733.guided.126, whole genome shotgun sequence	850..2049	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFMG010000009.1	94434..95303	99.195	870	0						
GCA_032274265.1_PDT001707411.1_genomic.fna	Salmonella_enterica	0.522	52.247 KB	27	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNFMI010000028.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12321446 SAMN34403664-rid17819883.denovo.028, whole genome shotgun sequence	18575..19012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNFMI010000187.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12321446 SAMN34403664-rid17819883.guided.037, whole genome shotgun sequence	31721..32158	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNFMI010000131.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12321446 SAMN34403664-rid17819883.denovo.134, whole genome shotgun sequence	2209..2339	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNFMI010000132.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12321446 SAMN34403664-rid17819883.denovo.135, whole genome shotgun sequence	557..687																																																avrA	ABNFMI010000033.1	43563..44432	99.54	870	0						
GCA_032274305.1_PDT001707410.1_genomic.fna	Salmonella_enterica	0.5224	71.921 KB	22	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFMJ010000003.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321436 SAMN34403582-rid17819873.denovo.003, whole genome shotgun sequence	17249..17686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFMJ010000152.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321436 SAMN34403582-rid17819873.guided.034, whole genome shotgun sequence	42045..42482	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFMJ010000090.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321436 SAMN34403582-rid17819873.denovo.092, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNFMJ010000098.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321436 SAMN34403582-rid17819873.denovo.100, whole genome shotgun sequence	3403..3664		enterobacteriales	IncX1	98.93	374 / 374	ABNFMJ010000057.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321436 SAMN34403582-rid17819873.denovo.058, whole genome shotgun sequence	322..695																																									avrA	ABNFMJ010000037.1	43552..44421	99.54	870	0						
GCA_032274345.1_PDT001707407.1_genomic.fna	Salmonella_enterica	0.5228	96.038 KB	16	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	9,46:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	I 9,46:l,z13:1,5	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNFML010000006.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12321443 SAMN34403601-rid17821713.denovo.006, whole genome shotgun sequence	56303..56740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNFML010000114.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12321443 SAMN34403601-rid17821713.guided.030, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFML010000037.1	43710..44578	99.655	869	0						
GCA_032274365.1_PDT001707412.1_genomic.fna	Salmonella_enterica	0.5245	29.82 KB	55	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aadA1	99.75	792/792	ABNFMH010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321439 SAMN34403603-rid17821723.denovo.077, whole genome shotgun sequence	18393..19184	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFMH010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321439 SAMN34403603-rid17821723.denovo.077, whole genome shotgun sequence	18393..19184	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFMH010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321439 SAMN34403603-rid17821723.denovo.087, whole genome shotgun sequence	7388..7825	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFMH010000302.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321439 SAMN34403603-rid17821723.guided.133, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFMH010000302.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321439 SAMN34403603-rid17821723.guided.133, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFMH010000303.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321439 SAMN34403603-rid17821723.guided.166, whole genome shotgun sequence	7126..7563	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNFMH010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321439 SAMN34403603-rid17821723.denovo.077, whole genome shotgun sequence	17049..17888	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFMH010000302.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321439 SAMN34403603-rid17821723.guided.133, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFMH010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321439 SAMN34403603-rid17821723.denovo.077, whole genome shotgun sequence	3333..4532	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFMH010000304.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321439 SAMN34403603-rid17821723.guided.196, whole genome shotgun sequence	1882..3081	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFMH010000196.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321439 SAMN34403603-rid17821723.denovo.201, whole genome shotgun sequence	2159..2718																																																						avrA	ABNFMH010000031.1	39349..40218	99.655	870	0						
GCA_032274385.1_PDT001707406.1_genomic.fna	Salmonella_enterica	0.5215	57.2 KB	26	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFII(pCTU2),IncI1-I(Alpha),pESA2	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFMN010000011.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321435 SAMN34403669-rid17819843.denovo.011, whole genome shotgun sequence	12462..12899	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFMN010000156.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321435 SAMN34403669-rid17819843.guided.059, whole genome shotgun sequence	14218..14655	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCTU2)	99.83	577 / 577	ABNFMN010000069.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321435 SAMN34403669-rid17819843.denovo.071, whole genome shotgun sequence	18848..19424	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNFMN010000114.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321435 SAMN34403669-rid17819843.denovo.117, whole genome shotgun sequence	4671..4812		enterobacteriales	pESA2	98.27	750 / 750	ABNFMN010000069.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321435 SAMN34403669-rid17819843.denovo.071, whole genome shotgun sequence	1994..2743																																									avrA	ABNFMN010000003.1	61533..62402	98.966	870	0						
GCA_032274445.1_PDT001707405.1_genomic.fna	Salmonella_enterica	0.523	53.308 KB	30	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFMO010000013.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321437 SAMN34403584-rid17819833.denovo.013, whole genome shotgun sequence	75548..75985	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFMO010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321437 SAMN34403584-rid17819833.denovo.073, whole genome shotgun sequence	22843..23634	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFMO010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321437 SAMN34403584-rid17819833.denovo.073, whole genome shotgun sequence	22843..23634	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFMO010000173.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321437 SAMN34403584-rid17819833.guided.111, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFMO010000174.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321437 SAMN34403584-rid17819833.guided.115, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFMO010000174.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321437 SAMN34403584-rid17819833.guided.115, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNFMO010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321437 SAMN34403584-rid17819833.denovo.073, whole genome shotgun sequence	21499..22338	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFMO010000174.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321437 SAMN34403584-rid17819833.guided.115, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFMO010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321437 SAMN34403584-rid17819833.denovo.073, whole genome shotgun sequence	7783..8982	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFMO010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321437 SAMN34403584-rid17819833.guided.099, whole genome shotgun sequence	5852..7051	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFMO010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321437 SAMN34403584-rid17819833.denovo.123, whole genome shotgun sequence	5361..5920																																																						avrA	ABNFMO010000042.1	39524..40393	99.655	870	0						
GCA_032274465.1_PDT001707404.1_genomic.fna	Salmonella_enterica	0.5241	46.359 KB	30	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	-:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNFMP010000015.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12321438 SAMN34403587-rid17819823.denovo.015, whole genome shotgun sequence	12445..12882	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNFMP010000194.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12321438 SAMN34403587-rid17819823.guided.075, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFMP010000161.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12321438 SAMN34403587-rid17819823.denovo.164, whole genome shotgun sequence	1945..2075	enterobacteriales	Col440I	91.74	109 / 114	ABNFMP010000149.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12321438 SAMN34403587-rid17819823.denovo.152, whole genome shotgun sequence	2246..2354		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNFMP010000142.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12321438 SAMN34403587-rid17819823.denovo.145, whole genome shotgun sequence	239..380																																									avrA	ABNFMP010000006.1	94598..95467	99.425	870	0						
GCA_032274475.1_PDT001707402.1_genomic.fna	Salmonella_enterica	0.5222	346.111 KB	6	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFMR010000008.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.denovo.08, whole genome shotgun sequence	145550..145987	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFMR010000029.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.denovo.32, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFMR010000029.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.denovo.32, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFMR010000029.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.denovo.32, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFMR010000029.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.denovo.32, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFMR010000029.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.denovo.32, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNFMR010000054.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.guided.28, whole genome shotgun sequence	1766..2203	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFMR010000056.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.guided.35, whole genome shotgun sequence	897..1733	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFMR010000056.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.guided.35, whole genome shotgun sequence	95..897	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFMR010000056.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.guided.35, whole genome shotgun sequence	94..897	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFMR010000056.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.guided.35, whole genome shotgun sequence	94..897	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFMR010000056.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.guided.35, whole genome shotgun sequence	94..897	Streptomycin	AF321550	aph(6)-Id	99.88	837/837	ABNFMR010000057.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.guided.36, whole genome shotgun sequence	897..1733	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFMR010000057.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.guided.36, whole genome shotgun sequence	95..897	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFMR010000057.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.guided.36, whole genome shotgun sequence	94..897	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFMR010000057.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.guided.36, whole genome shotgun sequence	94..897	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFMR010000057.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.guided.36, whole genome shotgun sequence	94..897	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNFMR010000030.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.denovo.33, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFMR010000058.1 Salmonella enterica strain 22TX12GT02-S1 SAMN34384822-rid18274493.guided.38, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFMR010000009.1	39546..40415	99.655	870	0						
GCA_032274885.1_PDT001707409.1_genomic.fna	Salmonella_enterica	0.5219	60.943 KB	23	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFMK010000051.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321442 SAMN34403605-rid17819863.denovo.052, whole genome shotgun sequence	15421..15858	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFMK010000145.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321442 SAMN34403605-rid17819863.guided.051, whole genome shotgun sequence	15452..15889	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFMK010000120.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321442 SAMN34403605-rid17819863.denovo.123, whole genome shotgun sequence	1905..2035																																																						avrA	ABNFMK010000020.1	61615..62484	98.966	870	0						
GCA_032274925.1_PDT001707403.1_genomic.fna	Salmonella_enterica	0.5217	521.956 KB	3	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFMQ010000001.1 Salmonella enterica strain 22TX12GT01-S1 SAMN34384821-rid18274503.denovo.01, whole genome shotgun sequence	604580..605017	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFMQ010000040.1 Salmonella enterica strain 22TX12GT01-S1 SAMN34384821-rid18274503.guided.26, whole genome shotgun sequence	779..1216	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFMQ010000003.1	174562..175431	98.966	870	0						
GCA_032274935.1_PDT001707408.1_genomic.fna	Salmonella_enterica	0.5236	47.481 KB	32	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNFMM010000083.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12321445 SAMN34403663-rid17819853.denovo.084, whole genome shotgun sequence	14346..14783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNFMM010000204.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12321445 SAMN34403663-rid17819853.guided.083, whole genome shotgun sequence	14377..14814	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	ABNFMM010000148.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12321445 SAMN34403663-rid17819853.denovo.151, whole genome shotgun sequence	792..945																																																						avrA	ABNFMM010000005.1	101823..102692	99.08	870	0						
GCA_032274965.1_PDT001707401.1_genomic.fna	Salmonella_enterica	0.5217	201.53 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFMS010000001.1 Salmonella enterica strain 22TX12CB07-S1 SAMN34384820-rid18274483.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFMS010000026.1 Salmonella enterica strain 22TX12CB07-S1 SAMN34384820-rid18274483.denovo.27, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFMS010000026.1 Salmonella enterica strain 22TX12CB07-S1 SAMN34384820-rid18274483.denovo.27, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNFMS010000057.1 Salmonella enterica strain 22TX12CB07-S1 SAMN34384820-rid18274483.guided.36, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFMS010000057.1 Salmonella enterica strain 22TX12CB07-S1 SAMN34384820-rid18274483.guided.36, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFMS010000058.1 Salmonella enterica strain 22TX12CB07-S1 SAMN34384820-rid18274483.guided.37, whole genome shotgun sequence	4222..4659	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNFMS010000026.1 Salmonella enterica strain 22TX12CB07-S1 SAMN34384820-rid18274483.denovo.27, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFMS010000057.1 Salmonella enterica strain 22TX12CB07-S1 SAMN34384820-rid18274483.guided.36, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFMS010000026.1 Salmonella enterica strain 22TX12CB07-S1 SAMN34384820-rid18274483.denovo.27, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFMS010000056.1 Salmonella enterica strain 22TX12CB07-S1 SAMN34384820-rid18274483.guided.34, whole genome shotgun sequence	937..2136	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFMS010000030.1 Salmonella enterica strain 22TX12CB07-S1 SAMN34384820-rid18274483.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABNFMS010000003.1	149828..150697	99.655	870	0						
GCA_032275505.1_PDT001707380.1_genomic.fna	Salmonella_enterica	0.52	524.876 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	12	aac(6')-Iaa,aadA1,aadA1,aph(3'')-Ib,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aadA1,aadA1,aac(6')-Iaa,aph(3'')-Ib,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,floR,floR,floR,sul1,sul2,sul1,sul2,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	2	IncFIB(pN55391),IncQ1,IncQ1	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFNO010000001.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.denovo.01, whole genome shotgun sequence	502483..502920	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFNO010000023.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.denovo.25, whole genome shotgun sequence	12927..13718	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFNO010000023.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.denovo.25, whole genome shotgun sequence	12927..13718	Spectinomycin, Streptomycin	JQ414041	aph(3'')-Ib	100	671/804	ABNFNO010000024.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.denovo.29, whole genome shotgun sequence	8804..9474	Streptomycin	AF321551	aph(4)-Ia	100	1026/1026	ABNFNO010000027.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.denovo.33, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFNO010000027.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.denovo.33, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNFNO010000036.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.denovo.47, whole genome shotgun sequence	93..908	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	aadA1	99.75	792/792	ABNFNO010000051.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.guided.24, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFNO010000051.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.guided.24, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.95	438/438	ABNFNO010000053.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.guided.27, whole genome shotgun sequence	9181..9618	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	695/804	ABNFNO010000054.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.guided.28, whole genome shotgun sequence	1185..1879	Streptomycin	AF321551	aph(4)-Ia	100	1026/1026	ABNFNO010000055.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.guided.32, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFNO010000055.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.guided.32, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNFNO010000060.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.guided.43, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	blaCTX-M-65	100	876/876	ABNFNO010000028.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.denovo.34, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNFNO010000056.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.guided.35, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNFNO010000030.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.denovo.38, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFNO010000058.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.guided.39, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNFNO010000059.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.guided.40, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNFNO010000023.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.denovo.25, whole genome shotgun sequence	11583..12422	Sulfamethoxazole	U12338	sul2	100	816/816	ABNFNO010000024.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.denovo.29, whole genome shotgun sequence	85..900	Sulfamethoxazole	FN995456	sul1	100	840/840	ABNFNO010000051.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.guided.24, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	sul2	100	816/816	ABNFNO010000054.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.guided.28, whole genome shotgun sequence	309..1124	Sulfamethoxazole	FN995456	tet(A)	100	1200/1200	ABNFNO010000024.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.denovo.29, whole genome shotgun sequence	6704..7903	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFNO010000054.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.guided.28, whole genome shotgun sequence	2780..3979	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNFNO010000025.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.denovo.30, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNFNO010000057.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.guided.36, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																											parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFNO010000020.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.denovo.21, whole genome shotgun sequence	9109..9668	enterobacteriales	IncQ1	100	796 / 796	ABNFNO010000024.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.denovo.29, whole genome shotgun sequence	2241..3036		enterobacteriales	IncQ1	100	796 / 796	ABNFNO010000054.1 Salmonella enterica strain 22TX08GT03-S SAMN34384250-rid17819703.guided.28, whole genome shotgun sequence	7647..8442																																									avrA	ABNFNO010000004.1	145394..146263	98.966	870	0						
GCA_032275525.1_PDT001707381.1_genomic.fna	Salmonella_enterica	0.5169	148.261 KB	10	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFNM010000019.1 Salmonella enterica strain 22TX08CB06-S SAMN34384249-rid17821623.denovo.019, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFNM010000040.1 Salmonella enterica strain 22TX08CB06-S SAMN34384249-rid17821623.denovo.041, whole genome shotgun sequence	2315..3151	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFNM010000040.1 Salmonella enterica strain 22TX08CB06-S SAMN34384249-rid17821623.denovo.041, whole genome shotgun sequence	1513..2315	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFNM010000040.1 Salmonella enterica strain 22TX08CB06-S SAMN34384249-rid17821623.denovo.041, whole genome shotgun sequence	1512..2315	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFNM010000040.1 Salmonella enterica strain 22TX08CB06-S SAMN34384249-rid17821623.denovo.041, whole genome shotgun sequence	1512..2315	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFNM010000040.1 Salmonella enterica strain 22TX08CB06-S SAMN34384249-rid17821623.denovo.041, whole genome shotgun sequence	1512..2315	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNFNM010000123.1 Salmonella enterica strain 22TX08CB06-S SAMN34384249-rid17821623.guided.061, whole genome shotgun sequence	2356..3192	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFNM010000123.1 Salmonella enterica strain 22TX08CB06-S SAMN34384249-rid17821623.guided.061, whole genome shotgun sequence	1554..2356	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFNM010000123.1 Salmonella enterica strain 22TX08CB06-S SAMN34384249-rid17821623.guided.061, whole genome shotgun sequence	1553..2356	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFNM010000123.1 Salmonella enterica strain 22TX08CB06-S SAMN34384249-rid17821623.guided.061, whole genome shotgun sequence	1553..2356	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFNM010000123.1 Salmonella enterica strain 22TX08CB06-S SAMN34384249-rid17821623.guided.061, whole genome shotgun sequence	1553..2356	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNFNM010000124.1 Salmonella enterica strain 22TX08CB06-S SAMN34384249-rid17821623.guided.088, whole genome shotgun sequence	911..1348	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNFNM010000053.1 Salmonella enterica strain 22TX08CB06-S SAMN34384249-rid17821623.denovo.055, whole genome shotgun sequence	6901..7227	enterobacteriales	IncHI2A	99.52	630 / 630	ABNFNM010000052.1 Salmonella enterica strain 22TX08CB06-S SAMN34384249-rid17821623.denovo.054, whole genome shotgun sequence	11024..11653		enterobacteriales	IncX1	100	373 / 373	ABNFNM010000060.1 Salmonella enterica strain 22TX08CB06-S SAMN34384249-rid17821623.denovo.063, whole genome shotgun sequence	2218..2590																																									avrA	ABNFNM010000015.1	94214..95083	99.655	870	0						
GCA_032275545.1_PDT001707379.1_genomic.fna	Salmonella_enterica	0.5226	243.164 KB	6	aroC_43,dnaN_41,hemD_16,hisD_13,purE_12,sucA_13,thrA_4	195	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFNN010000005.1 Salmonella enterica strain 22TX08GT04-S SAMN34384251-rid17819693.denovo.05, whole genome shotgun sequence	153895..154332	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.93	435/438	ABNFNN010000037.1 Salmonella enterica strain 22TX08GT04-S SAMN34384251-rid17819693.guided.30, whole genome shotgun sequence	1..435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032275565.1_PDT001707378.1_genomic.fna	Salmonella_enterica	0.5217	298.833 KB	6	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_58,thrA_4	412	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col156,ColpVC,ColpVC	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_58	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNFNP010000003.1 Salmonella enterica strain 22TX08GT08-S SAMN34384252-rid17821613.denovo.03, whole genome shotgun sequence	326664..327101	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNFNP010000045.1 Salmonella enterica strain 22TX08GT08-S SAMN34384252-rid17821613.guided.33, whole genome shotgun sequence	567..1004	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNFNP010000046.1 Salmonella enterica strain 22TX08GT08-S SAMN34384252-rid17821613.guided.34, whole genome shotgun sequence	567..1004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	96.1	154 / 154	ABNFNP010000030.1 Salmonella enterica strain 22TX08GT08-S SAMN34384252-rid17821613.denovo.32, whole genome shotgun sequence	483..636	enterobacteriales	ColpVC	96.89	193 / 193	ABNFNP010000031.1 Salmonella enterica strain 22TX08GT08-S SAMN34384252-rid17821613.denovo.35, whole genome shotgun sequence	1524..1716		enterobacteriales	ColpVC	98.96	193 / 193	ABNFNP010000033.1 Salmonella enterica strain 22TX08GT08-S SAMN34384252-rid17821613.denovo.37, whole genome shotgun sequence	805..997																																									avrA	ABNFNP010000008.1	151242..152111	99.54	870	0						
GCA_032275585.1_PDT001707377.1_genomic.fna	Salmonella_enterica	0.5217	390.664 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFNQ010000001.1 Salmonella enterica strain 22TX11GT02-S1 SAMN34384253-rid17821603.denovo.01, whole genome shotgun sequence	1329423..1329860	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFNQ010000020.1 Salmonella enterica strain 22TX11GT02-S1 SAMN34384253-rid17821603.denovo.24, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFNQ010000020.1 Salmonella enterica strain 22TX11GT02-S1 SAMN34384253-rid17821603.denovo.24, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFNQ010000020.1 Salmonella enterica strain 22TX11GT02-S1 SAMN34384253-rid17821603.denovo.24, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFNQ010000020.1 Salmonella enterica strain 22TX11GT02-S1 SAMN34384253-rid17821603.denovo.24, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFNQ010000020.1 Salmonella enterica strain 22TX11GT02-S1 SAMN34384253-rid17821603.denovo.24, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNFNQ010000040.1 Salmonella enterica strain 22TX11GT02-S1 SAMN34384253-rid17821603.guided.20, whole genome shotgun sequence	1459..1896	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFNQ010000041.1 Salmonella enterica strain 22TX11GT02-S1 SAMN34384253-rid17821603.guided.23, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFNQ010000041.1 Salmonella enterica strain 22TX11GT02-S1 SAMN34384253-rid17821603.guided.23, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFNQ010000041.1 Salmonella enterica strain 22TX11GT02-S1 SAMN34384253-rid17821603.guided.23, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFNQ010000041.1 Salmonella enterica strain 22TX11GT02-S1 SAMN34384253-rid17821603.guided.23, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFNQ010000041.1 Salmonella enterica strain 22TX11GT02-S1 SAMN34384253-rid17821603.guided.23, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNFNQ010000021.1 Salmonella enterica strain 22TX11GT02-S1 SAMN34384253-rid17821603.denovo.26, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFNQ010000042.1 Salmonella enterica strain 22TX11GT02-S1 SAMN34384253-rid17821603.guided.25, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	ABNFNQ010000019.1 Salmonella enterica strain 22TX11GT02-S1 SAMN34384253-rid17821603.denovo.22, whole genome shotgun sequence	792..945																																																						avrA	ABNFNQ010000007.1	140045..140914	99.655	870	0						
GCA_032276285.1_PDT001707340.1_genomic.fna	Salmonella_enterica	0.5216	47.207 KB	34	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	-:f,g:-	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	-	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNFOZ010000036.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321485 SAMN34406700-rid17819453.denovo.036, whole genome shotgun sequence	12228..12665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNFOZ010000213.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321485 SAMN34406700-rid17819453.guided.083, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNFOZ010000038.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321485 SAMN34406700-rid17819453.denovo.038, whole genome shotgun sequence	37382..37804	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNFOZ010000215.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321485 SAMN34406700-rid17819453.guided.114, whole genome shotgun sequence	8725..9147	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	ABNFOZ010000148.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321485 SAMN34406700-rid17819453.denovo.153, whole genome shotgun sequence	2158..3363	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNFOZ010000216.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321485 SAMN34406700-rid17819453.guided.152, whole genome shotgun sequence	2199..3404	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFOZ010000147.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321485 SAMN34406700-rid17819453.denovo.151, whole genome shotgun sequence	186..316																																																						avrA	ABNFOZ010000014.1	61462..62331	99.655	870	0						
GCA_032276305.1_PDT001707341.1_genomic.fna	Salmonella_enterica	0.5223	48.404 KB	33	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFOY010000021.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321509 SAMN34407537-rid17819463.denovo.021, whole genome shotgun sequence	11330..11767	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNFOY010000076.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321509 SAMN34407537-rid17819463.denovo.076, whole genome shotgun sequence	6190..6992	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFOY010000076.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321509 SAMN34407537-rid17819463.denovo.076, whole genome shotgun sequence	6190..6993	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFOY010000076.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321509 SAMN34407537-rid17819463.denovo.076, whole genome shotgun sequence	6190..6993	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFOY010000076.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321509 SAMN34407537-rid17819463.denovo.076, whole genome shotgun sequence	6190..6993	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNFOY010000076.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321509 SAMN34407537-rid17819463.denovo.076, whole genome shotgun sequence	5450..6190	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNFOY010000076.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321509 SAMN34407537-rid17819463.denovo.076, whole genome shotgun sequence	5450..6190	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABNFOY010000213.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321509 SAMN34407537-rid17819463.guided.108, whole genome shotgun sequence	3024..3461	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNFOY010000214.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321509 SAMN34407537-rid17819463.guided.130, whole genome shotgun sequence	673..1475	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFOY010000214.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321509 SAMN34407537-rid17819463.guided.130, whole genome shotgun sequence	672..1475	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFOY010000214.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321509 SAMN34407537-rid17819463.guided.130, whole genome shotgun sequence	672..1475	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFOY010000214.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321509 SAMN34407537-rid17819463.guided.130, whole genome shotgun sequence	672..1475	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNFOY010000214.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321509 SAMN34407537-rid17819463.guided.130, whole genome shotgun sequence	1475..2215	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNFOY010000214.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321509 SAMN34407537-rid17819463.guided.130, whole genome shotgun sequence	1475..2215	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNFOY010000134.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321509 SAMN34407537-rid17819463.denovo.138, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABNFOY010000046.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321509 SAMN34407537-rid17819463.denovo.046, whole genome shotgun sequence	5374..5870																																																avrA	ABNFOY010000019.1	61525..62394	98.966	870	0						
GCA_032276325.1_PDT001707338.1_genomic.fna	Salmonella_enterica	0.5228	91.32 KB	14	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNFPB010000007.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12321486 SAMN34406701-rid17819433.denovo.07, whole genome shotgun sequence	56353..56790	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNFPB010000092.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12321486 SAMN34406701-rid17819433.guided.55, whole genome shotgun sequence	14179..14616	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFPB010000035.1	43666..44535	99.77	870	0						
GCA_032276335.1_PDT001707339.1_genomic.fna	Salmonella_enterica	0.5224	92.234 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFPA010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321480 SAMN34406653-rid17819443.denovo.001, whole genome shotgun sequence	252610..253047	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFPA010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321480 SAMN34406653-rid17819443.denovo.074, whole genome shotgun sequence	11982..12773	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFPA010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321480 SAMN34406653-rid17819443.denovo.074, whole genome shotgun sequence	11982..12773	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFPA010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321480 SAMN34406653-rid17819443.guided.032, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFPA010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321480 SAMN34406653-rid17819443.guided.056, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFPA010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321480 SAMN34406653-rid17819443.guided.056, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNFPA010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321480 SAMN34406653-rid17819443.denovo.095, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNFPA010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321480 SAMN34406653-rid17819443.guided.096, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNFPA010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321480 SAMN34406653-rid17819443.denovo.105, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABNFPA010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321480 SAMN34406653-rid17819443.guided.104, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABNFPA010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321480 SAMN34406653-rid17819443.denovo.074, whole genome shotgun sequence	10638..11477	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFPA010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321480 SAMN34406653-rid17819443.guided.056, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFPA010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321480 SAMN34406653-rid17819443.denovo.079, whole genome shotgun sequence	1822..3021	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFPA010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321480 SAMN34406653-rid17819443.guided.056, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFPA010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321480 SAMN34406653-rid17819443.denovo.085, whole genome shotgun sequence	5299..5858																																																						avrA	ABNFPA010000007.1	39691..40560	99.655	870	0						
GCA_032276365.1_PDT001707335.1_genomic.fna	Salmonella_enterica	0.5226	48.438 KB	31	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFPC010000011.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321479 SAMN34406623-rid17819403.denovo.011, whole genome shotgun sequence	18181..18618	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFPC010000200.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321479 SAMN34406623-rid17819403.guided.067, whole genome shotgun sequence	22860..23297	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFPC010000144.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321479 SAMN34406623-rid17819403.denovo.147, whole genome shotgun sequence	2057..2699	enterobacteriales	IncFII(S)	100	262 / 262	ABNFPC010000136.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321479 SAMN34406623-rid17819403.denovo.139, whole genome shotgun sequence	3404..3665		enterobacteriales	IncX1	98.93	374 / 374	ABNFPC010000194.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321479 SAMN34406623-rid17819403.denovo.197, whole genome shotgun sequence	190..563																																									avrA	ABNFPC010000012.1	61583..62452	99.54	870	0						
GCA_032276385.1_PDT001707337.1_genomic.fna	Salmonella_enterica	0.5227	53.33 KB	29	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncN	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFPD010000014.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.denovo.014, whole genome shotgun sequence	76136..76573	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFPD010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.denovo.099, whole genome shotgun sequence	11967..12758	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFPD010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.denovo.099, whole genome shotgun sequence	11967..12758	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFPD010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.denovo.128, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFPD010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.denovo.128, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNFPD010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.guided.084, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFPD010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.guided.108, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFPD010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.guided.108, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFPD010000174.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.guided.129, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFPD010000174.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.guided.129, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNFPD010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.denovo.134, whole genome shotgun sequence	800..1675	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNFPD010000175.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.guided.139, whole genome shotgun sequence	501..1376	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNFPD010000119.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.denovo.124, whole genome shotgun sequence	2799..4012	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFPD010000176.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.guided.140, whole genome shotgun sequence	35..1248	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNFPD010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.denovo.099, whole genome shotgun sequence	10623..11462	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFPD010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.guided.108, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFPD010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.denovo.119, whole genome shotgun sequence	1853..3052	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFPD010000173.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.guided.117, whole genome shotgun sequence	1904..3103	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFPD010000073.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.denovo.074, whole genome shotgun sequence	9109..9668	enterobacteriales	IncN	99.22	514 / 514	ABNFPD010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321477 SAMN34406620-rid17819423.denovo.120, whole genome shotgun sequence	239..752																																																avrA	ABNFPD010000042.1	39430..40299	99.655	870	0						
GCA_032276445.1_PDT001707332.1_genomic.fna	Salmonella_enterica	0.5216	92.241 KB	18	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87G	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFPF010000003.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.denovo.003, whole genome shotgun sequence	83510..83947	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFPF010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.denovo.045, whole genome shotgun sequence	31731..32567	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFPF010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.denovo.045, whole genome shotgun sequence	30928..31731	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNFPF010000099.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.guided.049, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFPF010000099.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.guided.049, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNFPF010000100.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.guided.066, whole genome shotgun sequence	16055..16492	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNFPF010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.denovo.045, whole genome shotgun sequence	566..1711	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	819/861	ABNFPF010000080.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.denovo.084, whole genome shotgun sequence	3299..4117	Unknown Beta-lactam	KP050491	blaTEM-206	100	819/861	ABNFPF010000080.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.denovo.084, whole genome shotgun sequence	3299..4117	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	819/861	ABNFPF010000080.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.denovo.084, whole genome shotgun sequence	3299..4117	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNFPF010000099.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.guided.049, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNFPF010000104.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.guided.094, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNFPF010000104.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.guided.094, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNFPF010000104.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.guided.094, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNFPF010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.denovo.045, whole genome shotgun sequence	35703..36916	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFPF010000103.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.guided.085, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNFPF010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.denovo.045, whole genome shotgun sequence	30052..30867	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFPF010000099.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.guided.049, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNFPF010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.denovo.045, whole genome shotgun sequence	33828..35102	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNFPF010000099.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.guided.049, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																												gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																enterobacteriales	IncC	100	417 / 417	ABNFPF010000050.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.denovo.051, whole genome shotgun sequence	17492..17908	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNFPF010000039.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.denovo.039, whole genome shotgun sequence	2846..3105		enterobacteriales	IncX1	98.66	374 / 374	ABNFPF010000039.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12321465 SAMN34406618-rid17819373.denovo.039, whole genome shotgun sequence	38700..39073																																									avrA	ABNFPF010000008.1	39572..40440	99.54	870	0						
GCA_032276465.1_PDT001707330.1_genomic.fna	Salmonella_enterica	0.5222	60.962 KB	27	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFPH010000025.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321478 SAMN34406622-rid17819353.denovo.025, whole genome shotgun sequence	12485..12922	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFPH010000172.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12321478 SAMN34406622-rid17819353.guided.063, whole genome shotgun sequence	14196..14633	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFPH010000024.1	62216..63085	98.966	870	0						
GCA_032276885.1_PDT001707307.1_genomic.fna	Salmonella_enterica	0.5211	53.489 KB	30	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFQB010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312684 SAMN34387780-rid17819123.denovo.097, whole genome shotgun sequence	573..1010	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFQB010000104.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312684 SAMN34387780-rid17819123.denovo.107, whole genome shotgun sequence	6168..7004	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFQB010000104.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312684 SAMN34387780-rid17819123.denovo.107, whole genome shotgun sequence	7004..7807	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNFQB010000220.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312684 SAMN34387780-rid17819123.guided.099, whole genome shotgun sequence	614..1051	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFQB010000222.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312684 SAMN34387780-rid17819123.guided.129, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFQB010000222.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312684 SAMN34387780-rid17819123.guided.129, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNFQB010000148.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312684 SAMN34387780-rid17819123.denovo.153, whole genome shotgun sequence	577..1782	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNFQB010000223.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312684 SAMN34387780-rid17819123.guided.152, whole genome shotgun sequence	1839..3044	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNFQB010000145.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312684 SAMN34387780-rid17819123.denovo.149, whole genome shotgun sequence	1155..1836	enterobacteriales	IncFII	96.95	262 / 261	ABNFQB010000104.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312684 SAMN34387780-rid17819123.denovo.107, whole genome shotgun sequence	5284..5545		enterobacteriales	IncFII	96.95	262 / 261	ABNFQB010000222.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312684 SAMN34387780-rid17819123.guided.129, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNFQB010000166.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312684 SAMN34387780-rid17819123.denovo.171, whole genome shotgun sequence	94..235		enterobacteriales	IncX1	100	373 / 373	ABNFQB010000174.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312684 SAMN34387780-rid17819123.denovo.179, whole genome shotgun sequence	1122..1494																											avrA	ABNFQB010000043.1	39484..40353	99.655	870	0						
GCA_032276905.1_PDT001707306.1_genomic.fna	Salmonella_enterica	0.5196	66.21 KB	24	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFQD010000023.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312683 SAMN34387782-rid17819113.denovo.023, whole genome shotgun sequence	52336..52773	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFQD010000061.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312683 SAMN34387782-rid17819113.denovo.063, whole genome shotgun sequence	2754..3590	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFQD010000061.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312683 SAMN34387782-rid17819113.denovo.063, whole genome shotgun sequence	1952..2754	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFQD010000061.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312683 SAMN34387782-rid17819113.denovo.063, whole genome shotgun sequence	1951..2754	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFQD010000061.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312683 SAMN34387782-rid17819113.denovo.063, whole genome shotgun sequence	1951..2754	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFQD010000061.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312683 SAMN34387782-rid17819113.denovo.063, whole genome shotgun sequence	1951..2754	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNFQD010000205.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312683 SAMN34387782-rid17819113.guided.046, whole genome shotgun sequence	15872..16309	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFQD010000206.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312683 SAMN34387782-rid17819113.guided.061, whole genome shotgun sequence	2795..3631	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFQD010000206.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312683 SAMN34387782-rid17819113.guided.061, whole genome shotgun sequence	1993..2795	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFQD010000206.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312683 SAMN34387782-rid17819113.guided.061, whole genome shotgun sequence	1992..2795	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFQD010000206.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312683 SAMN34387782-rid17819113.guided.061, whole genome shotgun sequence	1992..2795	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFQD010000206.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312683 SAMN34387782-rid17819113.guided.061, whole genome shotgun sequence	1992..2795	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNFQD010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312683 SAMN34387782-rid17819113.denovo.041, whole genome shotgun sequence	12080..12406	enterobacteriales	IncHI2A	99.37	630 / 630	ABNFQD010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312683 SAMN34387782-rid17819113.denovo.041, whole genome shotgun sequence	30390..31019		enterobacteriales	IncX1	100	373 / 373	ABNFQD010000169.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312683 SAMN34387782-rid17819113.denovo.173, whole genome shotgun sequence	1128..1500																																									avrA	ABNFQD010000017.1	82190..83059	99.655	870	0						
GCA_032276925.1_PDT001707304.1_genomic.fna	Salmonella_enterica	0.5232	58.741 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFQE010000017.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312685 SAMN34387781-rid17819093.denovo.017, whole genome shotgun sequence	13052..13489	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFQE010000154.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312685 SAMN34387781-rid17819093.guided.084, whole genome shotgun sequence	15468..15905	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNFQE010000127.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312685 SAMN34387781-rid17819093.denovo.130, whole genome shotgun sequence	1655..2297	enterobacteriales	IncFII(S)	100	262 / 262	ABNFQE010000099.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312685 SAMN34387781-rid17819093.denovo.102, whole genome shotgun sequence	9239..9500																																																avrA	ABNFQE010000005.1	104963..105831	100	869	0						
GCA_032276945.1_PDT001707305.1_genomic.fna	Salmonella_enterica	0.5232	66.141 KB	24	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_58,thrA_4	412	-:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC,ColpVC	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNFQC010000058.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22312664 SAMN34387778-rid17819103.denovo.058, whole genome shotgun sequence	14091..14528	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNFQC010000147.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22312664 SAMN34387778-rid17819103.guided.078, whole genome shotgun sequence	14122..14559	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	96.89	193 / 193	ABNFQC010000123.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22312664 SAMN34387778-rid17819103.denovo.126, whole genome shotgun sequence	1524..1716	enterobacteriales	ColpVC	98.96	193 / 193	ABNFQC010000126.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22312664 SAMN34387778-rid17819103.denovo.129, whole genome shotgun sequence	805..997																																																avrA	ABNFQC010000009.1	61649..62518	99.54	870	0						
GCA_032276965.1_PDT001707301.1_genomic.fna	Salmonella_enterica	0.5227	68.435 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFQH010000057.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312739 SAMN34387775-rid17819063.denovo.057, whole genome shotgun sequence	12561..12998	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFQH010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312739 SAMN34387775-rid17819063.guided.061, whole genome shotgun sequence	15495..15932	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNFQH010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312739 SAMN34387775-rid17819063.denovo.105, whole genome shotgun sequence	1795..2994	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFQH010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312739 SAMN34387775-rid17819063.guided.116, whole genome shotgun sequence	1836..3035	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFQH010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312739 SAMN34387775-rid17819063.denovo.100, whole genome shotgun sequence	5603..6162																																																						avrA	ABNFQH010000009.1	105309..106178	99.655	870	0						
GCA_032276975.1_PDT001707302.1_genomic.fna	Salmonella_enterica	0.5229	58.961 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFQG010000019.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.denovo.019, whole genome shotgun sequence	15446..15883	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFQG010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.denovo.096, whole genome shotgun sequence	11973..12764	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFQG010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.denovo.096, whole genome shotgun sequence	11973..12764	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFQG010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.denovo.123, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFQG010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.denovo.123, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNFQG010000150.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.denovo.159, whole genome shotgun sequence	93..908	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	aac(6')-Iaa	97.49	438/438	ABNFQG010000173.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.guided.070, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFQG010000175.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.guided.095, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFQG010000175.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.guided.095, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFQG010000177.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.guided.140, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFQG010000177.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.guided.140, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNFQG010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.guided.155, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	floR	98.19	1214/1215	ABNFQG010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.denovo.131, whole genome shotgun sequence	2069..3282	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFQG010000179.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.guided.143, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNFQG010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.denovo.096, whole genome shotgun sequence	10629..11468	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFQG010000175.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.guided.095, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFQG010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.denovo.106, whole genome shotgun sequence	1776..2975	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFQG010000176.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.guided.104, whole genome shotgun sequence	1809..3008	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNFQG010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.denovo.132, whole genome shotgun sequence	91..564	Trimethoprim	AF393510	dfrA14	100	474/474	ABNFQG010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.guided.141, whole genome shotgun sequence	155..628	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFQG010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312740 SAMN34387776-rid17819073.denovo.119, whole genome shotgun sequence	5307..5866																																																						avrA	ABNFQG010000015.1	81424..82293	99.655	870	0						
GCA_032277005.1_PDT001707303.1_genomic.fna	Salmonella_enterica	0.5224	76.955 KB	20	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFQF010000026.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312665 SAMN34387779-rid17819083.denovo.026, whole genome shotgun sequence	16074..16511	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFQF010000129.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312665 SAMN34387779-rid17819083.guided.034, whole genome shotgun sequence	37991..38428	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFQF010000081.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312665 SAMN34387779-rid17819083.denovo.083, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNFQF010000090.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312665 SAMN34387779-rid17819083.denovo.093, whole genome shotgun sequence	3388..3649																																																avrA	ABNFQF010000038.1	43668..44537	99.54	870	0						
GCA_032277025.1_PDT001707300.1_genomic.fna	Salmonella_enterica	0.5229	65.853 KB	27	aroC_118,dnaN_107,hemD_8,hisD_51,purE_2,sucA_117,thrA_16	319	-:z29:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_118	dnaN	100	100	dnaN_107	hemD	100	100	hemD_8	hisD	100	100	hisD_51	purE	100	100	purE_2	sucA	100	100	sucA_117	thrA	100	100	thrA_16	-	z29	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z29:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFQI010000003.1 Salmonella enterica subsp. enterica serovar Tennessee strain FSIS22312662 SAMN34387777-rid17819053.denovo.003, whole genome shotgun sequence	52432..52869	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFQI010000141.1 Salmonella enterica subsp. enterica serovar Tennessee strain FSIS22312662 SAMN34387777-rid17819053.guided.088, whole genome shotgun sequence	14994..15431	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFQI010000013.1	81668..82537	99.655	870	0						
GCA_032277045.1_PDT001707298.1_genomic.fna	Salmonella_enterica	0.5234	69.768 KB	24	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFQK010000002.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.denovo.002, whole genome shotgun sequence	15479..15916	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFQK010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.denovo.089, whole genome shotgun sequence	11923..12714	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFQK010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.denovo.089, whole genome shotgun sequence	11923..12714	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFQK010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.denovo.117, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFQK010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.denovo.117, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNFQK010000154.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.guided.060, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFQK010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.guided.088, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFQK010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.guided.088, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFQK010000160.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.guided.125, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFQK010000160.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.guided.125, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNFQK010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.denovo.122, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFQK010000159.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.guided.120, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNFQK010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.denovo.089, whole genome shotgun sequence	10579..11418	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFQK010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.guided.088, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFQK010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.denovo.115, whole genome shotgun sequence	1797..2996	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFQK010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.guided.114, whole genome shotgun sequence	1852..3051	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFQK010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312737 SAMN34387773-rid17819033.denovo.137, whole genome shotgun sequence	912..1471																																																						avrA	ABNFQK010000043.1	39538..40407	99.655	870	0						
GCA_032277065.1_PDT001707296.1_genomic.fna	Salmonella_enterica	0.5229	59.158 KB	27	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFQN010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312736 SAMN34387772-rid17819013.denovo.013, whole genome shotgun sequence	17129..17566	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFQN010000174.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312736 SAMN34387772-rid17819013.guided.075, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFQN010000100.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312736 SAMN34387772-rid17819013.denovo.103, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNFQN010000103.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312736 SAMN34387772-rid17819013.denovo.106, whole genome shotgun sequence	3410..3671																																																avrA	ABNFQN010000040.1	43658..44527	99.54	870	0						
GCA_032277085.1_PDT001707297.1_genomic.fna	Salmonella_enterica	0.5214	52.74 KB	28	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	-:f,g:-	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	-	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNFQL010000061.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312735 SAMN34387774-rid17819023.denovo.062, whole genome shotgun sequence	12208..12645	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNFQL010000201.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312735 SAMN34387774-rid17819023.guided.117, whole genome shotgun sequence	8094..8531	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNFQL010000052.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312735 SAMN34387774-rid17819023.denovo.053, whole genome shotgun sequence	27538..27960	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNFQL010000199.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312735 SAMN34387774-rid17819023.guided.080, whole genome shotgun sequence	18575..18997	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	ABNFQL010000139.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312735 SAMN34387774-rid17819023.denovo.144, whole genome shotgun sequence	2158..3363	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNFQL010000202.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312735 SAMN34387774-rid17819023.guided.143, whole genome shotgun sequence	2199..3404	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFQL010000003.1	81669..82538	99.655	870	0						
GCA_032277105.1_PDT001707295.1_genomic.fna	Salmonella_enterica	0.5226	64.074 KB	24	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	2	aac(6')-Iaa,aac(6')-Iaa,tet(C),tet(C)	1	parC_p.T57S	3	Col(pHAD28),Col440I,ColE10	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNFQM010000024.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22312734 SAMN34387770-rid17819003.denovo.024, whole genome shotgun sequence	11343..11780	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNFQM010000154.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22312734 SAMN34387770-rid17819003.guided.072, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	tet(C)	99.83	1191/1191	ABNFQM010000115.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22312734 SAMN34387770-rid17819003.denovo.119, whole genome shotgun sequence	1317..2507	Doxycycline, Tetracycline	AF055345	tet(C)	99.83	1191/1191	ABNFQM010000157.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22312734 SAMN34387770-rid17819003.guided.117, whole genome shotgun sequence	1469..2659	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNFQM010000113.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22312734 SAMN34387770-rid17819003.denovo.116, whole genome shotgun sequence	557..687	enterobacteriales	Col440I	94.74	114 / 114	ABNFQM010000124.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22312734 SAMN34387770-rid17819003.denovo.128, whole genome shotgun sequence	787..900		enterobacteriales	ColE10	100	177 / 177	ABNFQM010000111.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22312734 SAMN34387770-rid17819003.denovo.114, whole genome shotgun sequence	3465..3641																																									avrA	ABNFQM010000009.1	94975..95844	99.54	870	0						
GCA_032277125.1_PDT001707299.1_genomic.fna	Salmonella_enterica	0.5233	51.986 KB	28	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFQJ010000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312738 SAMN34387771-rid17819043.denovo.003, whole genome shotgun sequence	13106..13543	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFQJ010000167.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312738 SAMN34387771-rid17819043.guided.049, whole genome shotgun sequence	32255..32692	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNFQJ010000140.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312738 SAMN34387771-rid17819043.denovo.143, whole genome shotgun sequence	144..786	enterobacteriales	IncFII(S)	100	262 / 262	ABNFQJ010000110.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312738 SAMN34387771-rid17819043.denovo.113, whole genome shotgun sequence	9310..9571																																																avrA	ABNFQJ010000006.1	100906..101774	100	869	0						
GCA_032277145.1_PDT001707294.1_genomic.fna	Salmonella_enterica	0.522	86.345 KB	17	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNFQO010000024.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22312731 SAMN34387767-rid17818993.denovo.024, whole genome shotgun sequence	15471..15908	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNFQO010000121.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22312731 SAMN34387767-rid17818993.guided.046, whole genome shotgun sequence	20577..21014	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFQO010000003.1	130895..131764	99.425	870	0						
GCA_032277165.1_PDT001707293.1_genomic.fna	Salmonella_enterica	0.5223	52.352 KB	30	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		4	Col(pHAD28),ColpVC,IncC,IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFQP010000019.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312686 SAMN34387766-rid17818983.denovo.019, whole genome shotgun sequence	15466..15903	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFQP010000182.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312686 SAMN34387766-rid17818983.guided.120, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNFQP010000038.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312686 SAMN34387766-rid17818983.denovo.038, whole genome shotgun sequence	41633..42448	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFQP010000181.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312686 SAMN34387766-rid17818983.guided.110, whole genome shotgun sequence	191..1006	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNFQP010000038.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312686 SAMN34387766-rid17818983.denovo.038, whole genome shotgun sequence	38257..39456	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFQP010000181.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312686 SAMN34387766-rid17818983.guided.110, whole genome shotgun sequence	3183..4382	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNFQP010000132.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312686 SAMN34387766-rid17818983.denovo.136, whole genome shotgun sequence	371..501	enterobacteriales	ColpVC	96.86	191 / 193	ABNFQP010000153.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312686 SAMN34387766-rid17818983.denovo.157, whole genome shotgun sequence	999..1189		enterobacteriales	IncC	100	417 / 417	ABNFQP010000126.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312686 SAMN34387766-rid17818983.denovo.130, whole genome shotgun sequence	1602..2018		enterobacteriales	IncX1	98.93	374 / 374	ABNFQP010000164.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312686 SAMN34387766-rid17818983.denovo.169, whole genome shotgun sequence	548..921																																		avrA	ABNFQP010000005.1	105002..105871	99.885	870	0						
GCA_032277185.1_PDT001707292.1_genomic.fna	Salmonella_enterica	0.5227	68.003 KB	21	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFQQ010000030.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS22312733 SAMN34387769-rid17818973.denovo.030, whole genome shotgun sequence	15462..15899	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFQQ010000124.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS22312733 SAMN34387769-rid17818973.guided.069, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032277205.1_PDT001707291.1_genomic.fna	Salmonella_enterica	0.5232	74.18 KB	20	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	-:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	-	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:l,v:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFQR010000011.1 Salmonella enterica subsp. enterica serovar London strain FSIS22312732 SAMN34387768-rid17818963.denovo.011, whole genome shotgun sequence	56310..56747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFQR010000127.1 Salmonella enterica subsp. enterica serovar London strain FSIS22312732 SAMN34387768-rid17818963.guided.055, whole genome shotgun sequence	15130..15567	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNFQR010000097.1 Salmonella enterica subsp. enterica serovar London strain FSIS22312732 SAMN34387768-rid17818963.denovo.100, whole genome shotgun sequence	557..687	enterobacteriales	ColRNAI	90.83	109 / 130	ABNFQR010000091.1 Salmonella enterica subsp. enterica serovar London strain FSIS22312732 SAMN34387768-rid17818963.denovo.094, whole genome shotgun sequence	1016..1124																																																avrA	ABNFQR010000007.1	35283..36152	99.425	870	0						
GCA_032277245.1_PDT001707290.1_genomic.fna	Salmonella_enterica	0.5225	85.179 KB	21	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,floR,floR,sul1,sul1	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFQS010000019.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312654 SAMN34387765-rid17818953.denovo.019, whole genome shotgun sequence	76163..76600	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFQS010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312654 SAMN34387765-rid17818953.denovo.093, whole genome shotgun sequence	5679..6470	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFQS010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312654 SAMN34387765-rid17818953.denovo.093, whole genome shotgun sequence	5679..6470	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFQS010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312654 SAMN34387765-rid17818953.denovo.107, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFQS010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312654 SAMN34387765-rid17818953.denovo.107, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNFQS010000142.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312654 SAMN34387765-rid17818953.guided.035, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNFQS010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312654 SAMN34387765-rid17818953.guided.105, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFQS010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312654 SAMN34387765-rid17818953.guided.105, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNFQS010000147.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312654 SAMN34387765-rid17818953.guided.118, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFQS010000147.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312654 SAMN34387765-rid17818953.guided.118, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	floR	98.19	1214/1215	ABNFQS010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312654 SAMN34387765-rid17818953.denovo.099, whole genome shotgun sequence	3320..4533	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFQS010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312654 SAMN34387765-rid17818953.guided.102, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNFQS010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312654 SAMN34387765-rid17818953.denovo.093, whole genome shotgun sequence	4335..5174	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFQS010000147.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312654 SAMN34387765-rid17818953.guided.118, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFQS010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312654 SAMN34387765-rid17818953.denovo.091, whole genome shotgun sequence	5361..5920																																																						avrA	ABNFQS010000002.1	149550..150419	99.655	870	0						
GCA_032277255.1_PDT001707288.1_genomic.fna	Salmonella_enterica	0.5237	53.488 KB	29	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,fosA3,fosA3,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFQU010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.denovo.063, whole genome shotgun sequence	12513..12950	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFQU010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.denovo.103, whole genome shotgun sequence	11987..12778	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFQU010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.denovo.103, whole genome shotgun sequence	11987..12778	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFQU010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.denovo.139, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFQU010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.denovo.139, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNFQU010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.guided.113, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFQU010000188.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.guided.115, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFQU010000188.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.guided.115, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFQU010000191.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.guided.141, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFQU010000191.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.guided.141, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	fosA3	100	417/417	ABNFQU010000177.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.denovo.185, whole genome shotgun sequence	320..736	Fosfomycin	AB522970	fosA3	100	417/417	ABNFQU010000192.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.guided.181, whole genome shotgun sequence	361..777	Fosfomycin	AB522970	floR	98.19	1214/1215	ABNFQU010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.denovo.136, whole genome shotgun sequence	3189..4402	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFQU010000190.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.guided.140, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNFQU010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.denovo.103, whole genome shotgun sequence	10643..11482	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFQU010000188.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.guided.115, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFQU010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.denovo.132, whole genome shotgun sequence	1814..3013	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFQU010000189.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.guided.116, whole genome shotgun sequence	5513..6712	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFQU010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312678 SAMN34387419-rid17818933.denovo.126, whole genome shotgun sequence	5584..6143																																																						avrA	ABNFQU010000009.1	81424..82293	99.655	870	0						
GCA_032277285.1_PDT001707289.1_genomic.fna	Salmonella_enterica	0.5221	66.947 KB	24	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aadA1,aadA1,aac(6')-Iaa,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	3	Col(BS512),IncFIB(pN55391),IncX4	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aadA1	99.75	792/792	ABNFQT010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312682 SAMN34387764-rid17818943.denovo.050, whole genome shotgun sequence	1329..2120	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFQT010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312682 SAMN34387764-rid17818943.denovo.050, whole genome shotgun sequence	1329..2120	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFQT010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312682 SAMN34387764-rid17818943.denovo.064, whole genome shotgun sequence	11321..11758	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFQT010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312682 SAMN34387764-rid17818943.guided.065, whole genome shotgun sequence	13909..14346	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFQT010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312682 SAMN34387764-rid17818943.guided.076, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFQT010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312682 SAMN34387764-rid17818943.guided.076, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNFQT010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312682 SAMN34387764-rid17818943.denovo.050, whole genome shotgun sequence	2625..3464	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFQT010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312682 SAMN34387764-rid17818943.guided.076, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFQT010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312682 SAMN34387764-rid17818943.denovo.050, whole genome shotgun sequence	15981..17180	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFQT010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312682 SAMN34387764-rid17818943.guided.076, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(BS512)	100	233 / 233	ABNFQT010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312682 SAMN34387764-rid17818943.denovo.128, whole genome shotgun sequence	400..632	enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFQT010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312682 SAMN34387764-rid17818943.denovo.105, whole genome shotgun sequence	5604..6163		enterobacteriales	IncX4	100	374 / 374	ABNFQT010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312682 SAMN34387764-rid17818943.denovo.118, whole genome shotgun sequence	233..606																																									avrA	ABNFQT010000006.1	81701..82570	99.655	870	0						
GCA_032277305.1_PDT001707286.1_genomic.fna	Salmonella_enterica	0.5214	47.791 KB	30	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		4	Col(pHAD28),ColRNAI,IncFIB(pHCM2),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFQW010000014.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312679 SAMN34387420-rid17818913.denovo.014, whole genome shotgun sequence	15470..15907	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFQW010000175.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312679 SAMN34387420-rid17818913.guided.114, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNFQW010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312679 SAMN34387420-rid17818913.denovo.094, whole genome shotgun sequence	13429..14244	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFQW010000176.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312679 SAMN34387420-rid17818913.guided.131, whole genome shotgun sequence	642..1457	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNFQW010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312679 SAMN34387420-rid17818913.denovo.094, whole genome shotgun sequence	16421..17620	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFQW010000176.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312679 SAMN34387420-rid17818913.guided.131, whole genome shotgun sequence	3634..4833	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNFQW010000135.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312679 SAMN34387420-rid17818913.denovo.139, whole genome shotgun sequence	371..501	enterobacteriales	ColRNAI	90.84	131 / 130	ABNFQW010000130.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312679 SAMN34387420-rid17818913.denovo.134, whole genome shotgun sequence	3858..3988		enterobacteriales	IncFIB(pHCM2)	96.69	875 / 875	ABNFQW010000049.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312679 SAMN34387420-rid17818913.denovo.049, whole genome shotgun sequence	18175..19049		enterobacteriales	IncX1	98.66	374 / 374	ABNFQW010000165.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312679 SAMN34387420-rid17818913.denovo.169, whole genome shotgun sequence	217..590																																		avrA	ABNFQW010000006.1	105179..106048	99.885	870	0						
GCA_032277325.1_PDT001707287.1_genomic.fna	Salmonella_enterica	0.5225	62.216 KB	27	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFQV010000026.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312681 SAMN34387422-rid17818923.denovo.026, whole genome shotgun sequence	11313..11750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFQV010000150.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312681 SAMN34387422-rid17818923.guided.090, whole genome shotgun sequence	7462..7899	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNFQV010000050.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312681 SAMN34387422-rid17818923.denovo.050, whole genome shotgun sequence	29673..30878	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNFQV010000153.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312681 SAMN34387422-rid17818923.guided.123, whole genome shotgun sequence	2198..3403	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABNFQV010000005.1	93865..94734	99.885	870	0						
GCA_032277345.1_PDT001707284.1_genomic.fna	Salmonella_enterica	0.5229	45.988 KB	34	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	-:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	Col156,ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	-	Salmonella enterica subspecies enterica (subspecies I)	I -:i:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFQY010000063.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312675 SAMN34387235-rid17818893.denovo.063, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFQY010000152.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312675 SAMN34387235-rid17818893.denovo.156, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFQY010000152.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312675 SAMN34387235-rid17818893.denovo.156, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNFQY010000193.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312675 SAMN34387235-rid17818893.guided.079, whole genome shotgun sequence	12441..12878	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFQY010000195.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312675 SAMN34387235-rid17818893.guided.154, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFQY010000195.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312675 SAMN34387235-rid17818893.guided.154, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNFQY010000165.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312675 SAMN34387235-rid17818893.denovo.170, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNFQY010000197.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312675 SAMN34387235-rid17818893.guided.174, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNFQY010000152.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312675 SAMN34387235-rid17818893.denovo.156, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNFQY010000195.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312675 SAMN34387235-rid17818893.guided.154, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNFQY010000155.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312675 SAMN34387235-rid17818893.denovo.160, whole genome shotgun sequence	2192..3397	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNFQY010000196.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312675 SAMN34387235-rid17818893.guided.159, whole genome shotgun sequence	2223..3428	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col156	94.81	154 / 154	ABNFQY010000143.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312675 SAMN34387235-rid17818893.denovo.146, whole genome shotgun sequence	792..945	enterobacteriales	ColRNAI	90.08	131 / 130	ABNFQY010000149.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312675 SAMN34387235-rid17818893.denovo.152, whole genome shotgun sequence	4021..4151																																																avrA	ABNFQY010000009.1	83883..84752	99.77	870	0						
GCA_032277365.1_PDT001707285.1_genomic.fna	Salmonella_enterica	0.5213	61.512 KB	26	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	-:f,g:-	5	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	2	ColRNAI,IncY	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	-	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNFQX010000017.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312680 SAMN34387421-rid17818903.denovo.017, whole genome shotgun sequence	62397..62834	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNFQX010000044.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312680 SAMN34387421-rid17818903.denovo.044, whole genome shotgun sequence	35569..36348	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABNFQX010000167.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312680 SAMN34387421-rid17818903.guided.057, whole genome shotgun sequence	22131..22910	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	98.17	438/438	ABNFQX010000170.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312680 SAMN34387421-rid17818903.guided.077, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNFQX010000037.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312680 SAMN34387421-rid17818903.denovo.037, whole genome shotgun sequence	42211..42633	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNFQX010000169.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312680 SAMN34387421-rid17818903.guided.068, whole genome shotgun sequence	18575..18997	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNFQX010000044.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312680 SAMN34387421-rid17818903.denovo.044, whole genome shotgun sequence	36853..37692	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFQX010000167.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312680 SAMN34387421-rid17818903.guided.057, whole genome shotgun sequence	23415..24254	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFQX010000101.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312680 SAMN34387421-rid17818903.denovo.107, whole genome shotgun sequence	6632..7831	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFQX010000172.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312680 SAMN34387421-rid17818903.guided.106, whole genome shotgun sequence	6673..7872	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNFQX010000124.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312680 SAMN34387421-rid17818903.denovo.130, whole genome shotgun sequence	1294..1424	enterobacteriales	IncY	99.74	765 / 765	ABNFQX010000077.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312680 SAMN34387421-rid17818903.denovo.081, whole genome shotgun sequence	17547..18311																																																avrA	ABNFQX010000004.1	98848..99717	99.655	870	0						
GCA_032277385.1_PDT001707283.1_genomic.fna	Salmonella_enterica	0.5225	66.193 KB	24	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNFQZ010000003.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS22312674 SAMN34387234-rid17818883.denovo.003, whole genome shotgun sequence	58671..59108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNFQZ010000136.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS22312674 SAMN34387234-rid17818883.guided.055, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFQZ010000107.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS22312674 SAMN34387234-rid17818883.denovo.110, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABNFQZ010000099.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS22312674 SAMN34387234-rid17818883.denovo.102, whole genome shotgun sequence	3175..3285		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNFQZ010000097.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS22312674 SAMN34387234-rid17818883.denovo.100, whole genome shotgun sequence	4550..5083																																									avrA	ABNFQZ010000026.1	62007..62876	99.425	870	0						
GCA_032277405.1_PDT001707282.1_genomic.fna	Salmonella_enterica	0.5228	64.727 KB	22	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFRA010000049.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312676 SAMN34387233-rid17818873.denovo.049, whole genome shotgun sequence	14078..14515	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFRA010000152.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312676 SAMN34387233-rid17818873.guided.054, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFRA010000093.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312676 SAMN34387233-rid17818873.denovo.096, whole genome shotgun sequence	6829..7471	enterobacteriales	IncFII(S)	100	262 / 262	ABNFRA010000104.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312676 SAMN34387233-rid17818873.denovo.107, whole genome shotgun sequence	3387..3648																																																avrA	ABNFRA010000022.1	61582..62451	99.54	870	0						
GCA_032277425.1_PDT001707281.1_genomic.fna	Salmonella_enterica	0.5235	45.121 KB	37	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFRB010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312677 SAMN34387232-rid17818863.denovo.061, whole genome shotgun sequence	12501..12938	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFRB010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312677 SAMN34387232-rid17818863.denovo.088, whole genome shotgun sequence	18442..19233	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFRB010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312677 SAMN34387232-rid17818863.denovo.088, whole genome shotgun sequence	18442..19233	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFRB010000220.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312677 SAMN34387232-rid17818863.guided.074, whole genome shotgun sequence	14504..14941	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFRB010000224.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312677 SAMN34387232-rid17818863.guided.170, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFRB010000224.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312677 SAMN34387232-rid17818863.guided.170, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNFRB010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312677 SAMN34387232-rid17818863.denovo.088, whole genome shotgun sequence	17098..17937	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFRB010000224.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312677 SAMN34387232-rid17818863.guided.170, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFRB010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312677 SAMN34387232-rid17818863.denovo.088, whole genome shotgun sequence	3382..4581	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFRB010000223.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312677 SAMN34387232-rid17818863.guided.115, whole genome shotgun sequence	8478..9677	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNFRB010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312677 SAMN34387232-rid17818863.denovo.159, whole genome shotgun sequence	63..536	Trimethoprim	AF393510	dfrA14	100	474/474	ABNFRB010000225.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312677 SAMN34387232-rid17818863.guided.173, whole genome shotgun sequence	93..566	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFRB010000142.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312677 SAMN34387232-rid17818863.denovo.146, whole genome shotgun sequence	2145..2704																																																						avrA	ABNFRB010000034.1	43596..44465	99.655	870	0						
GCA_032277445.1_PDT001707279.1_genomic.fna	Salmonella_enterica	0.5227	68.228 KB	24	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFRD010000024.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.denovo.024, whole genome shotgun sequence	52276..52713	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFRD010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.denovo.069, whole genome shotgun sequence	22871..23662	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFRD010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.denovo.069, whole genome shotgun sequence	22871..23662	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFRD010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.denovo.113, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFRD010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.denovo.113, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNFRD010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.denovo.143, whole genome shotgun sequence	93..908	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	X62115	aac(6')-Iaa	97.49	438/438	ABNFRD010000148.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.guided.036, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNFRD010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.guided.117, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFRD010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.guided.117, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNFRD010000154.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.guided.118, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFRD010000154.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.guided.118, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNFRD010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.guided.138, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	X62115	blaCTX-M-65	100	876/876	ABNFRD010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.denovo.119, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNFRD010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.guided.121, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNFRD010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.denovo.111, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFRD010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.guided.114, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNFRD010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.denovo.069, whole genome shotgun sequence	21527..22366	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFRD010000154.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.guided.118, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFRD010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.denovo.069, whole genome shotgun sequence	7811..9010	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFRD010000151.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.guided.105, whole genome shotgun sequence	2889..4088	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFRD010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312673 SAMN34387231-rid17818843.denovo.071, whole genome shotgun sequence	9109..9668																																																						avrA	ABNFRD010000018.1	83867..84736	99.655	870	0						
GCA_032277465.1_PDT001707280.1_genomic.fna	Salmonella_enterica	0.5214	55.165 KB	28	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		5	ColRNAI,ColpVC,IncC,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFRC010000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312672 SAMN34387230-rid17818853.denovo.004, whole genome shotgun sequence	56287..56724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFRC010000192.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312672 SAMN34387230-rid17818853.guided.103, whole genome shotgun sequence	10626..11063	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNFRC010000062.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312672 SAMN34387230-rid17818853.denovo.062, whole genome shotgun sequence	14271..15416	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNFRC010000193.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312672 SAMN34387230-rid17818853.guided.121, whole genome shotgun sequence	2978..4123	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNFRC010000096.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312672 SAMN34387230-rid17818853.denovo.097, whole genome shotgun sequence	209..1024	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFRC010000194.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312672 SAMN34387230-rid17818853.guided.128, whole genome shotgun sequence	240..1055	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNFRC010000096.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312672 SAMN34387230-rid17818853.denovo.097, whole genome shotgun sequence	3201..4400	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFRC010000194.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312672 SAMN34387230-rid17818853.guided.128, whole genome shotgun sequence	3232..4431	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	ColRNAI	91.07	112 / 130	ABNFRC010000143.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312672 SAMN34387230-rid17818853.denovo.148, whole genome shotgun sequence	2005..2116	enterobacteriales	ColpVC	98.96	193 / 193	ABNFRC010000155.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312672 SAMN34387230-rid17818853.denovo.160, whole genome shotgun sequence	806..998		enterobacteriales	IncC	100	417 / 417	ABNFRC010000129.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312672 SAMN34387230-rid17818853.denovo.134, whole genome shotgun sequence	1592..2008		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNFRC010000126.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312672 SAMN34387230-rid17818853.denovo.131, whole genome shotgun sequence	247..388		enterobacteriales	IncX1	98.66	374 / 374	ABNFRC010000183.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312672 SAMN34387230-rid17818853.denovo.189, whole genome shotgun sequence	167..540																											avrA	ABNFRC010000014.1	81753..82622	99.885	870	0						
GCA_032277485.1_PDT001707278.1_genomic.fna	Salmonella_enterica	0.5226	73.53 KB	23	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFRE010000051.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312671 SAMN34387229-rid17818833.denovo.052, whole genome shotgun sequence	14076..14513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFRE010000144.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312671 SAMN34387229-rid17818833.guided.051, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	262 / 262	ABNFRE010000104.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312671 SAMN34387229-rid17818833.denovo.107, whole genome shotgun sequence	2395..2656																																																						avrA	ABNFRE010000016.1	81684..82553	99.54	870	0						
GCA_032277505.1_PDT001707276.1_genomic.fna	Salmonella_enterica	0.5235	53.866 KB	27	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	-:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	-	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:z:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNFRF010000055.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22312667 SAMN34387227-rid17818813.denovo.055, whole genome shotgun sequence	14341..14778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNFRF010000166.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22312667 SAMN34387227-rid17818813.guided.078, whole genome shotgun sequence	14144..14581	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.04	115 / 131	ABNFRF010000124.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22312667 SAMN34387227-rid17818813.denovo.127, whole genome shotgun sequence	1100..1214	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFRF010000136.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22312667 SAMN34387227-rid17818813.denovo.139, whole genome shotgun sequence	1708..1838																																																avrA	ABNFRF010000006.1	81901..82770	99.08	870	0						
GCA_032277525.1_PDT001707277.1_genomic.fna	Salmonella_enterica	0.5185	52.865 KB	30	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	-:i:-	5	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,tet(B),tet(B),bleO,bleO	0		4	Col440I,IncHI2,IncHI2A,p0111	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	-	Salmonella enterica subspecies enterica (subspecies I)	I -:i:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFRG010000008.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312670 SAMN34387228-rid17818823.denovo.008, whole genome shotgun sequence	13319..13756	Amikacin, Tobramycin	NC_003197	aadA1	99.62	792/792	ABNFRG010000032.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312670 SAMN34387228-rid17818823.denovo.032, whole genome shotgun sequence	151..942	Spectinomycin, Streptomycin	JX185132	aadA1	99.62	792/792	ABNFRG010000032.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312670 SAMN34387228-rid17818823.denovo.032, whole genome shotgun sequence	151..942	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	99.75	816/816	ABNFRG010000162.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312670 SAMN34387228-rid17818823.denovo.169, whole genome shotgun sequence	524..1339	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU855787	aac(6')-Iaa	100	438/438	ABNFRG010000181.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312670 SAMN34387228-rid17818823.guided.070, whole genome shotgun sequence	14151..14588	Amikacin, Tobramycin	NC_003197	aadA1	99.62	792/792	ABNFRG010000184.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312670 SAMN34387228-rid17818823.guided.141, whole genome shotgun sequence	3310..4101	Spectinomycin, Streptomycin	JX185132	aadA1	99.62	792/792	ABNFRG010000184.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312670 SAMN34387228-rid17818823.guided.141, whole genome shotgun sequence	3310..4101	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	99.75	816/816	ABNFRG010000187.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312670 SAMN34387228-rid17818823.guided.168, whole genome shotgun sequence	107..922	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU855787	tet(B)	100	1206/1206	ABNFRG010000185.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312670 SAMN34387228-rid17818823.guided.153, whole genome shotgun sequence	1053..2258	Doxycycline, Tetracycline, Minocycline	AP000342	tet(B)	100	1206/1206	ABNFRG010000186.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312670 SAMN34387228-rid17818823.guided.154, whole genome shotgun sequence	1053..2258	Doxycycline, Tetracycline, Minocycline	AF326777	bleO	100	392/399	ABNFRG010000179.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312670 SAMN34387228-rid17818823.denovo.188, whole genome shotgun sequence	41..432	Bleomycin	AF051917	bleO	100	392/399	ABNFRG010000188.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312670 SAMN34387228-rid17818823.guided.187, whole genome shotgun sequence	177..568	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col440I	93.64	110 / 114	ABNFRG010000146.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312670 SAMN34387228-rid17818823.denovo.150, whole genome shotgun sequence	1566..1675	enterobacteriales	IncHI2	100	327 / 327	ABNFRG010000090.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312670 SAMN34387228-rid17818823.denovo.091, whole genome shotgun sequence	6876..7202		enterobacteriales	IncHI2A	100	630 / 630	ABNFRG010000096.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312670 SAMN34387228-rid17818823.denovo.097, whole genome shotgun sequence	553..1182		enterobacteriales	p0111	98.19	885 / 885	ABNFRG010000087.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312670 SAMN34387228-rid17818823.denovo.088, whole genome shotgun sequence	16673..17557																																		avrA	ABNFRG010000013.1	81753..82622	99.885	870	0						
GCA_032277545.1_PDT001707274.1_genomic.fna	Salmonella_enterica	0.5229	57.098 KB	27	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFRI010000015.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312668 SAMN34387224-rid17818793.denovo.015, whole genome shotgun sequence	17277..17714	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFRI010000182.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312668 SAMN34387224-rid17818793.guided.104, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFRI010000107.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312668 SAMN34387224-rid17818793.denovo.110, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNFRI010000123.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22312668 SAMN34387224-rid17818793.denovo.126, whole genome shotgun sequence	3392..3653																																																avrA	ABNFRI010000053.1	25038..25907	99.54	870	0						
GCA_032277555.1_PDT001707275.1_genomic.fna	Salmonella_enterica	0.5234	58.163 KB	28	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFRH010000022.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.denovo.022, whole genome shotgun sequence	12519..12956	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFRH010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.denovo.097, whole genome shotgun sequence	11988..12779	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFRH010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.denovo.097, whole genome shotgun sequence	11988..12779	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFRH010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.denovo.141, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFRH010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.denovo.141, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNFRH010000182.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.guided.048, whole genome shotgun sequence	24926..25363	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFRH010000185.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.guided.110, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFRH010000185.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.guided.110, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFRH010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.guided.140, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFRH010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.guided.140, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNFRH010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.denovo.134, whole genome shotgun sequence	2825..4038	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFRH010000186.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.guided.137, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNFRH010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.denovo.097, whole genome shotgun sequence	10644..11483	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFRH010000185.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.guided.110, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFRH010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.denovo.128, whole genome shotgun sequence	1827..3026	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFRH010000188.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.guided.146, whole genome shotgun sequence	1858..3057	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFRH010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312669 SAMN34387225-rid17818803.denovo.120, whole genome shotgun sequence	5305..5864																																																						avrA	ABNFRH010000013.1	83958..84827	99.655	870	0						
GCA_032277585.1_PDT001707273.1_genomic.fna	Salmonella_enterica	0.5217	51.552 KB	29	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFRJ010000016.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312666 SAMN34387226-rid17818783.denovo.016, whole genome shotgun sequence	11524..11961	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFRJ010000196.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312666 SAMN34387226-rid17818783.guided.026, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNFRJ010000013.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312666 SAMN34387226-rid17818783.denovo.013, whole genome shotgun sequence	31348..32163	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFRJ010000198.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312666 SAMN34387226-rid17818783.guided.132, whole genome shotgun sequence	299..1114	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNFRJ010000013.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312666 SAMN34387226-rid17818783.denovo.013, whole genome shotgun sequence	34340..35539	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFRJ010000198.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312666 SAMN34387226-rid17818783.guided.132, whole genome shotgun sequence	3291..4490	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncC	100	417 / 417	ABNFRJ010000129.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312666 SAMN34387226-rid17818783.denovo.131, whole genome shotgun sequence	3313..3729	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNFRJ010000122.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312666 SAMN34387226-rid17818783.denovo.123, whole genome shotgun sequence	4301..4442		enterobacteriales	IncX1	98.93	374 / 374	ABNFRJ010000148.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312666 SAMN34387226-rid17818783.denovo.152, whole genome shotgun sequence	196..569																																									avrA	ABNFRJ010000037.1	43810..44679	99.885	870	0						
GCA_032277745.1_PDT001911141.1_genomic.fna	Salmonella_enterica	0.5209	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFRT010000001.1 Salmonella enterica strain PNUSAS387765 SAMN37642196-rid19570033.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFRT010000028.1 Salmonella enterica strain PNUSAS387765 SAMN37642196-rid19570033.guided.16, whole genome shotgun sequence	17748..18185	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNFRT010000024.1 Salmonella enterica strain PNUSAS387765 SAMN37642196-rid19570033.denovo.27, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFRT010000019.1 Salmonella enterica strain PNUSAS387765 SAMN37642196-rid19570033.denovo.22, whole genome shotgun sequence	6820..7462		enterobacteriales	IncFII(S)	100	262 / 262	ABNFRT010000021.1 Salmonella enterica strain PNUSAS387765 SAMN37642196-rid19570033.denovo.24, whole genome shotgun sequence	3382..3643																																									avrA	ABNFRT010000002.1	553636..554505	99.54	870	0						
GCA_032277865.1_PDT001707261.1_genomic.fna	Salmonella_enterica	0.5225	172.303 KB	8	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFRV010000004.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321455 SAMN34379989-rid17818663.denovo.04, whole genome shotgun sequence	254653..255090	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFRV010000045.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321455 SAMN34379989-rid17818663.denovo.49, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFRV010000045.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321455 SAMN34379989-rid17818663.denovo.49, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFRV010000045.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321455 SAMN34379989-rid17818663.denovo.49, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFRV010000045.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321455 SAMN34379989-rid17818663.denovo.49, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFRV010000045.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321455 SAMN34379989-rid17818663.denovo.49, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNFRV010000061.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321455 SAMN34379989-rid17818663.guided.39, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFRV010000063.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321455 SAMN34379989-rid17818663.guided.47, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFRV010000063.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321455 SAMN34379989-rid17818663.guided.47, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFRV010000063.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321455 SAMN34379989-rid17818663.guided.47, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFRV010000063.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321455 SAMN34379989-rid17818663.guided.47, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFRV010000063.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321455 SAMN34379989-rid17818663.guided.47, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNFRV010000046.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321455 SAMN34379989-rid17818663.denovo.51, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFRV010000064.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321455 SAMN34379989-rid17818663.guided.50, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFRV010000005.1	39546..40415	99.655	870	0						
GCA_032277885.1_PDT001707260.1_genomic.fna	Salmonella_enterica	0.5214	208.958 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFRX010000002.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321456 SAMN34379995-rid17818653.denovo.02, whole genome shotgun sequence	193176..193613	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFRX010000046.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321456 SAMN34379995-rid17818653.guided.29, whole genome shotgun sequence	20627..21064	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFRX010000030.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321456 SAMN34379995-rid17818653.denovo.33, whole genome shotgun sequence	6809..7451	enterobacteriales	IncFII(S)	100	262 / 262	ABNFRX010000032.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12321456 SAMN34379995-rid17818653.denovo.35, whole genome shotgun sequence	3415..3676																																																avrA	ABNFRX010000004.1	174786..175655	99.54	870	0						
GCA_032277905.1_PDT001707255.1_genomic.fna	Salmonella_enterica	0.5214	55.444 KB	27	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNFRY010000034.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12321459 SAMN34380342-rid17818603.denovo.034, whole genome shotgun sequence	15471..15908	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNFRY010000202.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12321459 SAMN34380342-rid17818603.guided.117, whole genome shotgun sequence	7556..7993	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNFRY010000133.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12321459 SAMN34380342-rid17818603.denovo.136, whole genome shotgun sequence	2209..2339	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNFRY010000136.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12321459 SAMN34380342-rid17818603.denovo.139, whole genome shotgun sequence	557..687																																																avrA	ABNFRY010000036.1	43682..44551	99.54	870	0						
GCA_032277925.1_PDT001707254.1_genomic.fna	Salmonella_enterica	0.5203	67.923 KB	23	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	-:f,g:-	4	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,qnrB19,qnrB19,tet(B),tet(B)	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	-	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNFRZ010000023.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321458 SAMN34379978-rid17818593.denovo.023, whole genome shotgun sequence	52285..52722	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNFRZ010000162.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321458 SAMN34379978-rid17818593.guided.077, whole genome shotgun sequence	13645..14082	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNFRZ010000047.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321458 SAMN34379978-rid17818593.denovo.047, whole genome shotgun sequence	37389..37811	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNFRZ010000160.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321458 SAMN34379978-rid17818593.guided.072, whole genome shotgun sequence	18575..18997	Fosfomycin	LAPJ01000014	qnrB19	100	645/645	ABNFRZ010000115.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321458 SAMN34379978-rid17818593.denovo.120, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNFRZ010000164.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321458 SAMN34379978-rid17818593.guided.123, whole genome shotgun sequence	620..1264	Ciprofloxacin	EU432277	tet(B)	100	1206/1206	ABNFRZ010000110.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321458 SAMN34379978-rid17818593.denovo.114, whole genome shotgun sequence	2158..3363	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNFRZ010000163.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321458 SAMN34379978-rid17818593.guided.119, whole genome shotgun sequence	2199..3404	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFRZ010000108.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321458 SAMN34379978-rid17818593.denovo.112, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNFRZ010000115.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321458 SAMN34379978-rid17818593.denovo.120, whole genome shotgun sequence	1522..1652		enterobacteriales	Col440I	91.23	114 / 114	ABNFRZ010000164.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12321458 SAMN34379978-rid17818593.guided.123, whole genome shotgun sequence	3..116																																									avrA	ABNFRZ010000045.1	39484..40353	99.655	870	0						
GCA_032277945.1_PDT001707253.1_genomic.fna	Salmonella_enterica	0.5224	83.152 KB	20	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFSA010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321454 SAMN34379866-rid17818583.denovo.001, whole genome shotgun sequence	154471..154908	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFSA010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321454 SAMN34379866-rid17818583.denovo.067, whole genome shotgun sequence	18443..19234	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFSA010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321454 SAMN34379866-rid17818583.denovo.067, whole genome shotgun sequence	18443..19234	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFSA010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321454 SAMN34379866-rid17818583.guided.049, whole genome shotgun sequence	36845..37282	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFSA010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321454 SAMN34379866-rid17818583.guided.092, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFSA010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321454 SAMN34379866-rid17818583.guided.092, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNFSA010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321454 SAMN34379866-rid17818583.denovo.067, whole genome shotgun sequence	17099..17938	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFSA010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321454 SAMN34379866-rid17818583.guided.092, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFSA010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321454 SAMN34379866-rid17818583.denovo.067, whole genome shotgun sequence	3383..4582	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFSA010000119.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321454 SAMN34379866-rid17818583.guided.076, whole genome shotgun sequence	11494..12693	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFSA010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321454 SAMN34379866-rid17818583.denovo.050, whole genome shotgun sequence	33281..33840																																																						avrA	ABNFSA010000006.1	124261..125130	99.655	870	0						
GCA_032277985.1_PDT001707250.1_genomic.fna	Salmonella_enterica	0.5215	380.562 KB	4	aroC_13,dnaN_109,hemD_49,hisD_13,purE_12,sucA_13,thrA_4	512	30:b:e,n,x	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440II	aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	30	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Urbana		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNFSD010000001.1 Salmonella enterica strain PNUSAS344556 SAMN34380667-rid17818553.denovo.01, whole genome shotgun sequence	587977..588414	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNFSD010000037.1 Salmonella enterica strain PNUSAS344556 SAMN34380667-rid17818553.guided.11, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNFSD010000025.1 Salmonella enterica strain PNUSAS344556 SAMN34380667-rid17818553.denovo.29, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNFSD010000040.1 Salmonella enterica strain PNUSAS344556 SAMN34380667-rid17818553.guided.28, whole genome shotgun sequence	4226..4870	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNFSD010000025.1 Salmonella enterica strain PNUSAS344556 SAMN34380667-rid17818553.denovo.29, whole genome shotgun sequence	1519..1649	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNFSD010000040.1 Salmonella enterica strain PNUSAS344556 SAMN34380667-rid17818553.guided.28, whole genome shotgun sequence	3570..3700		enterobacteriales	Col440II	97.16	282 / 282	ABNFSD010000024.1 Salmonella enterica strain PNUSAS344556 SAMN34380667-rid17818553.denovo.27, whole genome shotgun sequence	5136..5417																																									avrA	ABNFSD010000006.1	95272..96141	99.425	870	0						
GCA_032278225.1_PDT001707229.1_genomic.fna	Salmonella_enterica	0.515	284.117 KB	8	aroC_33,dnaN_26,hemD_30,hisD_55,purE_141,sucA_145,thrA_28	3904	48:c:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_55	purE	100	100	purE_141	sucA	100	100	sucA_145	thrA	100	100	thrA_28	48	c	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:c:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFSE010000007.1 Salmonella enterica strain PNUSAS344544 SAMN34378116-rid17818343.denovo.07, whole genome shotgun sequence	123343..123780	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFSE010000054.1 Salmonella enterica strain PNUSAS344544 SAMN34378116-rid17818343.guided.33, whole genome shotgun sequence	8798..9235	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFSE010000005.1	144611..145480	96.667	870	0						
GCA_032278265.1_PDT001707222.1_genomic.fna	Salmonella_enterica	0.5207	541.008 KB	3	aroC_9,dnaN_9,hemD_6,hisD_7,purE_9,sucA_12,thrA_2	44	8:d:1,5	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,floR,floR	1	parC_p.T57S	3	IncFIB(pB171),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNFSG010000001.1 Salmonella enterica strain PNUSAS344540 SAMN34378114-rid17818273.denovo.01, whole genome shotgun sequence	648549..648986	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFSG010000017.1 Salmonella enterica strain PNUSAS344540 SAMN34378114-rid17818273.denovo.21, whole genome shotgun sequence	3085..3921	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFSG010000017.1 Salmonella enterica strain PNUSAS344540 SAMN34378114-rid17818273.denovo.21, whole genome shotgun sequence	3921..4724	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	ABNFSG010000026.1 Salmonella enterica strain PNUSAS344540 SAMN34378114-rid17818273.guided.13, whole genome shotgun sequence	44264..44701	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFSG010000029.1 Salmonella enterica strain PNUSAS344540 SAMN34378114-rid17818273.guided.20, whole genome shotgun sequence	3126..3962	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFSG010000029.1 Salmonella enterica strain PNUSAS344540 SAMN34378114-rid17818273.guided.20, whole genome shotgun sequence	3962..4765	Streptomycin	AF321551	floR	98.11	1214/1215	ABNFSG010000017.1 Salmonella enterica strain PNUSAS344540 SAMN34378114-rid17818273.denovo.21, whole genome shotgun sequence	915..2128	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNFSG010000029.1 Salmonella enterica strain PNUSAS344540 SAMN34378114-rid17818273.guided.20, whole genome shotgun sequence	956..2169	Chloramphenicol, Florfenicol	AF118107																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.7	644 / 643	ABNFSG010000009.1 Salmonella enterica strain PNUSAS344540 SAMN34378114-rid17818273.denovo.09, whole genome shotgun sequence	64726..65368	enterobacteriales	IncFII(S)	97.34	263 / 262	ABNFSG010000009.1 Salmonella enterica strain PNUSAS344540 SAMN34378114-rid17818273.denovo.09, whole genome shotgun sequence	29366..29625		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNFSG010000016.1 Salmonella enterica strain PNUSAS344540 SAMN34378114-rid17818273.denovo.19, whole genome shotgun sequence	5159..5300																																									avrA	ABNFSG010000002.1	557459..558328	99.425	870	0						
GCA_032278285.1_PDT001707224.1_genomic.fna	Salmonella_enterica	0.521	729.095 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	1	IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFSF010000001.1 Salmonella enterica strain PNUSAS344543 SAMN34378112-rid17818293.denovo.01, whole genome shotgun sequence	689506..689943	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFSF010000012.1 Salmonella enterica strain PNUSAS344543 SAMN34378112-rid17818293.denovo.15, whole genome shotgun sequence	33272..34108	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFSF010000012.1 Salmonella enterica strain PNUSAS344543 SAMN34378112-rid17818293.denovo.15, whole genome shotgun sequence	32469..33272	Streptomycin	AF321551	aac(6')-Iaa	99.54	438/438	ABNFSF010000035.1 Salmonella enterica strain PNUSAS344543 SAMN34378112-rid17818293.guided.10, whole genome shotgun sequence	5452..5889	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFSF010000037.1 Salmonella enterica strain PNUSAS344543 SAMN34378112-rid17818293.guided.17, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFSF010000037.1 Salmonella enterica strain PNUSAS344543 SAMN34378112-rid17818293.guided.17, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNFSF010000012.1 Salmonella enterica strain PNUSAS344543 SAMN34378112-rid17818293.denovo.15, whole genome shotgun sequence	2107..3252	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNFSF010000037.1 Salmonella enterica strain PNUSAS344543 SAMN34378112-rid17818293.guided.17, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.27	1214/1215	ABNFSF010000012.1 Salmonella enterica strain PNUSAS344543 SAMN34378112-rid17818293.denovo.15, whole genome shotgun sequence	37244..38457	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNFSF010000038.1 Salmonella enterica strain PNUSAS344543 SAMN34378112-rid17818293.guided.25, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNFSF010000012.1 Salmonella enterica strain PNUSAS344543 SAMN34378112-rid17818293.denovo.15, whole genome shotgun sequence	31593..32408	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFSF010000037.1 Salmonella enterica strain PNUSAS344543 SAMN34378112-rid17818293.guided.17, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNFSF010000012.1 Salmonella enterica strain PNUSAS344543 SAMN34378112-rid17818293.denovo.15, whole genome shotgun sequence	35369..36643	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNFSF010000037.1 Salmonella enterica strain PNUSAS344543 SAMN34378112-rid17818293.guided.17, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncC	100	417 / 417	ABNFSF010000011.1 Salmonella enterica strain PNUSAS344543 SAMN34378112-rid17818293.denovo.14, whole genome shotgun sequence	17493..17909																																																						avrA	ABNFSF010000002.1	561934..562804	99.656	871	0						
GCA_032278395.1_PDT001707165.1_genomic.fna	Salmonella_enterica	0.5227	335.186 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFSI010000001.1 Salmonella enterica strain PNUSAS344715 SAMN34377332-rid17817803.denovo.01, whole genome shotgun sequence	454798..455235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFSI010000034.1 Salmonella enterica strain PNUSAS344715 SAMN34377332-rid17817803.guided.25, whole genome shotgun sequence	6739..7176	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFSI010000007.1	94005..94874	98.966	870	0						
GCA_032279805.1_PDT001911132.1_genomic.fna	Salmonella_enterica	0.5209	699.967 KB	3	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNFSK010000001.1 Salmonella enterica strain PNUSAS387766 SAMN37642176-rid19569943.denovo.01, whole genome shotgun sequence	27650..28087	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNFSK010000029.1 Salmonella enterica strain PNUSAS387766 SAMN37642176-rid19569943.guided.18, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032279815.1_PDT001911134.1_genomic.fna	Salmonella_enterica	0.5221	713.145 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFSJ010000001.1 Salmonella enterica strain PNUSAS387764 SAMN37642195-rid19569963.denovo.01, whole genome shotgun sequence	676754..677191	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNFSJ010000019.1 Salmonella enterica strain PNUSAS387764 SAMN37642195-rid19569963.guided.14, whole genome shotgun sequence	8093..8530	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFSJ010000003.1	150634..151504	99.656	871	0						
GCA_032281225.1_PDT001702004.1_genomic.fna	Salmonella_enterica	0.5218	343.495 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFSP010000001.1 Salmonella enterica strain PNUSAS344680 SAMN34365365-rid17767233.denovo.01, whole genome shotgun sequence	834282..834719	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFSP010000029.1 Salmonella enterica strain PNUSAS344680 SAMN34365365-rid17767233.guided.17, whole genome shotgun sequence	26922..27359	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFSP010000001.1	1270287..1271156	98.966	870	0						
GCA_032281245.1_PDT001702006.1_genomic.fna	Salmonella_enterica	0.5098	267.77 KB	9	aroC_33,dnaN_713,hemD_30,hisD_213,purE_21,sucA_87,thrA_134	4578	47:z10:z35	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_713	hemD	100	100	hemD_30	hisD	100	100	hisD_213	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_134	47	z10	z35	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 47:z10:z35		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNFSO010000004.1 Salmonella enterica strain PNUSAS344657 SAMN34365124-rid17767253.denovo.04, whole genome shotgun sequence	171391..171828	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNFSO010000063.1 Salmonella enterica strain PNUSAS344657 SAMN34365124-rid17767253.guided.39, whole genome shotgun sequence	6564..7001	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFSO010000011.1	176016..176885	96.552	870	0						
GCA_032281285.1_PDT001702000.1_genomic.fna	Salmonella_enterica	0.5216	550.128 KB	4	aroC_15,dnaN_126,hemD_101,hisD_88,purE_8,sucA_19,thrA_18	446	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_126	hemD	100	100	hemD_101	hisD	100	100	hisD_88	purE	100	100	purE_8	sucA	100	100	sucA_19	thrA	100	100	thrA_18	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNFST010000002.1 Salmonella enterica strain PNUSAS344677 SAMN34365364-rid17767193.denovo.02, whole genome shotgun sequence	561084..561521	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNFST010000022.1 Salmonella enterica strain PNUSAS344677 SAMN34365364-rid17767193.guided.17, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFST010000008.1	140141..141010	99.77	870	0						
GCA_032281305.1_PDT001702002.1_genomic.fna	Salmonella_enterica	0.5182	553.87 KB	3	aroC_43,dnaN_47,hemD_455*,hisD_16,purE_41,sucA_15,thrA_3	Unknown	4:l,v:1,7	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	1	parC_p.T57S	3	IncFIB(pB171),IncFII(Yp),IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	99.7685185185185	100	hemD_455*	hisD	100	100	hisD_16	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Bredeney		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFSQ010000001.1 Salmonella enterica strain PNUSAS344672 SAMN34365367-rid17767213.denovo.01, whole genome shotgun sequence	688180..688617	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFSQ010000022.1 Salmonella enterica strain PNUSAS344672 SAMN34365367-rid17767213.guided.15, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNFSQ010000012.1 Salmonella enterica strain PNUSAS344672 SAMN34365367-rid17767213.denovo.12, whole genome shotgun sequence	68855..70000	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNFSQ010000023.1 Salmonella enterica strain PNUSAS344672 SAMN34365367-rid17767213.guided.16, whole genome shotgun sequence	20527..21672	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNFSQ010000010.1 Salmonella enterica strain PNUSAS344672 SAMN34365367-rid17767213.denovo.10, whole genome shotgun sequence	38471..39113	enterobacteriales	IncFII(Yp)	92.61	230 / 230	ABNFSQ010000010.1 Salmonella enterica strain PNUSAS344672 SAMN34365367-rid17767213.denovo.10, whole genome shotgun sequence	100212..100440		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNFSQ010000012.1 Salmonella enterica strain PNUSAS344672 SAMN34365367-rid17767213.denovo.12, whole genome shotgun sequence	74492..74633		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNFSQ010000023.1 Salmonella enterica strain PNUSAS344672 SAMN34365367-rid17767213.guided.16, whole genome shotgun sequence	15894..16035																																		avrA	ABNFSQ010000002.1	546784..547652	98.851	870	0						
GCA_032281325.1_PDT001702001.1_genomic.fna	Salmonella_enterica	0.52	464.59 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNFSS010000002.1 Salmonella enterica strain PNUSAS344666 SAMN34365122-rid17767203.denovo.02, whole genome shotgun sequence	255071..255508	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNFSS010000046.1 Salmonella enterica strain PNUSAS344666 SAMN34365122-rid17767203.guided.25, whole genome shotgun sequence	5098..5535	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.93	374 / 374	ABNFSS010000018.1 Salmonella enterica strain PNUSAS344666 SAMN34365122-rid17767203.denovo.18, whole genome shotgun sequence	772..1145																																																						avrA	ABNFSS010000003.1	120956..121824	99.425	870	0						
GCA_032281365.1_PDT001701997.1_genomic.fna	Salmonella_enterica	0.519	279.776 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaOXA-10,blaCTX-M-65,blaOXA-10,floR,cmlA1,floR,cmlA1,qnrS1,qnrS1,qnrS1,ARR-2,ARR-2,tet(B),tet(A),tet(A),tet(B),dfrA14,dfrA14	0		3	IncHI2,IncHI2A,IncQ1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFSW010000001.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.denovo.01, whole genome shotgun sequence	486073..486510	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFSW010000039.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.denovo.44, whole genome shotgun sequence	731..1522	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFSW010000039.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.denovo.44, whole genome shotgun sequence	731..1522	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNFSW010000056.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.guided.39, whole genome shotgun sequence	3133..3570	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFSW010000057.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.guided.45, whole genome shotgun sequence	4332..5123	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFSW010000057.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.guided.45, whole genome shotgun sequence	4332..5123	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNFSW010000032.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.denovo.33, whole genome shotgun sequence	11601..12476	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaOXA-10	100	801/801	ABNFSW010000039.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.denovo.44, whole genome shotgun sequence	1539..2339	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaCTX-M-65	100	876/876	ABNFSW010000054.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.guided.36, whole genome shotgun sequence	1123..1998	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaOXA-10	100	801/801	ABNFSW010000057.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.guided.45, whole genome shotgun sequence	3515..4315	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	floR	98.19	1214/1215	ABNFSW010000032.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.denovo.33, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.68	1260/1260	ABNFSW010000039.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.denovo.44, whole genome shotgun sequence	2604..3863	Chloramphenicol	M64556	floR	98.19	1214/1215	ABNFSW010000053.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.guided.34, whole genome shotgun sequence	8165..9378	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.68	1260/1260	ABNFSW010000057.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.guided.45, whole genome shotgun sequence	1991..3250	Chloramphenicol	M64556	qnrS1	100	657/657	ABNFSW010000035.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.denovo.40, whole genome shotgun sequence	4952..5608	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNFSW010000053.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.guided.34, whole genome shotgun sequence	1054..1710	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNFSW010000055.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.guided.37, whole genome shotgun sequence	1054..1710	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNFSW010000039.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.denovo.44, whole genome shotgun sequence	4184..4636	Rifampicin	HQ141279	ARR-2	100	453/453	ABNFSW010000057.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.guided.45, whole genome shotgun sequence	1218..1670	Rifampicin	HQ141279	tet(B)	100	1206/1206	ABNFSW010000037.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.denovo.42, whole genome shotgun sequence	1172..2377	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	99.92	1275/1275	ABNFSW010000053.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.guided.34, whole genome shotgun sequence	6290..7564	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1200/1200	ABNFSW010000055.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.guided.37, whole genome shotgun sequence	6365..7564	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNFSW010000059.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.guided.50, whole genome shotgun sequence	1675..2880	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNFSW010000039.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.denovo.44, whole genome shotgun sequence	183..656	Trimethoprim	KF921535	dfrA14	100	474/474	ABNFSW010000057.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.guided.45, whole genome shotgun sequence	5198..5671	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																													enterobacteriales	IncHI2	100	327 / 327	ABNFSW010000012.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.denovo.12, whole genome shotgun sequence	2412..2738	enterobacteriales	IncHI2A	99.52	630 / 630	ABNFSW010000012.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.denovo.12, whole genome shotgun sequence	18942..19571		enterobacteriales	IncQ1	100	796 / 796	ABNFSW010000034.1 Salmonella enterica strain PNUSAS344678 SAMN34365361-rid17767163.denovo.38, whole genome shotgun sequence	292..1087																																									avrA	ABNFSW010000002.1	540741..541610	99.885	870	0						
GCA_032281385.1_PDT001701993.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFSX010000001.1 Salmonella enterica strain PNUSAS344654 SAMN34365119-rid17767123.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFSX010000019.1 Salmonella enterica strain PNUSAS344654 SAMN34365119-rid17767123.guided.16, whole genome shotgun sequence	2547..2984	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFSX010000012.1 Salmonella enterica strain PNUSAS344654 SAMN34365119-rid17767123.denovo.12, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNFSX010000015.1 Salmonella enterica strain PNUSAS344654 SAMN34365119-rid17767123.denovo.15, whole genome shotgun sequence	3395..3656																																																avrA	ABNFSX010000002.1	553636..554505	99.54	870	0						
GCA_032281505.1_PDT001701984.1_genomic.fna	Salmonella_enterica	0.5214	225.008 KB	8	aroC_216,dnaN_206,hemD_25,hisD_248,purE_223*,sucA_35,thrA_196	763*	9:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_216	dnaN	100	100	dnaN_206	hemD	100	100	hemD_25	hisD	100	100	hisD_248	purE	99.749373433584	100	purE_223*	sucA	100	100	sucA_35	thrA	100	100	thrA_196	9	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Goettingen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFTB010000010.1 Salmonella enterica strain PNUSAS344676 SAMN34365366-rid17767033.denovo.10, whole genome shotgun sequence	94186..94623	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFTB010000046.1 Salmonella enterica strain PNUSAS344676 SAMN34365366-rid17767033.guided.38, whole genome shotgun sequence	1460..1897	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFTB010000009.1	136586..137455	99.655	870	0						
GCA_032281525.1_PDT001701985.1_genomic.fna	Salmonella_enterica	0.519	227.906 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaOXA-10,blaCTX-M-65,blaOXA-10,floR,cmlA1,cmlA1,floR,qnrS1,qnrS1,ARR-2,ARR-2,tet(B),tet(B),tet(A),tet(A),dfrA14,dfrA14	0		3	IncHI2,IncHI2A,IncQ1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFTC010000002.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.denovo.02, whole genome shotgun sequence	89493..89930	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFTC010000046.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.denovo.50, whole genome shotgun sequence	731..1522	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFTC010000046.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.denovo.50, whole genome shotgun sequence	731..1522	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNFTC010000066.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.guided.43, whole genome shotgun sequence	5681..6118	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFTC010000068.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.guided.52, whole genome shotgun sequence	4284..5075	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFTC010000068.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.guided.52, whole genome shotgun sequence	4284..5075	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNFTC010000021.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.denovo.21, whole genome shotgun sequence	11601..12476	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaOXA-10	100	801/801	ABNFTC010000046.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.denovo.50, whole genome shotgun sequence	1539..2339	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaCTX-M-65	100	876/876	ABNFTC010000067.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.guided.44, whole genome shotgun sequence	1674..2549	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaOXA-10	100	801/801	ABNFTC010000068.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.guided.52, whole genome shotgun sequence	3467..4267	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	floR	98.19	1214/1215	ABNFTC010000021.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.denovo.21, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.68	1260/1260	ABNFTC010000046.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.denovo.50, whole genome shotgun sequence	2604..3863	Chloramphenicol	M64556	cmlA1	99.68	1260/1260	ABNFTC010000068.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.guided.52, whole genome shotgun sequence	1943..3202	Chloramphenicol	M64556	floR	98.19	1214/1215	ABNFTC010000070.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.guided.55, whole genome shotgun sequence	2464..3677	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNFTC010000044.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.denovo.48, whole genome shotgun sequence	4952..5608	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNFTC010000071.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.guided.56, whole genome shotgun sequence	268..924	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNFTC010000046.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.denovo.50, whole genome shotgun sequence	4184..4636	Rifampicin	HQ141279	ARR-2	100	453/453	ABNFTC010000068.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.guided.52, whole genome shotgun sequence	1170..1622	Rifampicin	HQ141279	tet(B)	100	1206/1206	ABNFTC010000048.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.denovo.54, whole genome shotgun sequence	423..1628	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNFTC010000069.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.guided.53, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	99.92	1275/1275	ABNFTC010000070.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.guided.55, whole genome shotgun sequence	589..1863	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1200/1200	ABNFTC010000072.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.guided.63, whole genome shotgun sequence	664..1863	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNFTC010000046.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.denovo.50, whole genome shotgun sequence	183..656	Trimethoprim	KF921535	dfrA14	100	474/474	ABNFTC010000068.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.guided.52, whole genome shotgun sequence	5150..5623	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																				enterobacteriales	IncHI2	100	327 / 327	ABNFTC010000012.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.denovo.12, whole genome shotgun sequence	2413..2739	enterobacteriales	IncHI2A	99.52	630 / 630	ABNFTC010000012.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.denovo.12, whole genome shotgun sequence	18943..19572		enterobacteriales	IncQ1	100	796 / 796	ABNFTC010000041.1 Salmonella enterica strain PNUSAS344674 SAMN34365131-rid17767043.denovo.45, whole genome shotgun sequence	292..1087																																									avrA	ABNFTC010000001.1	434810..435679	99.885	870	0						
GCA_032281545.1_PDT001701981.1_genomic.fna	Salmonella_enterica	0.5221	698.088 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	2	ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFTE010000001.1 Salmonella enterica strain PNUSAS344673 SAMN34365130-rid17767003.denovo.01, whole genome shotgun sequence	1111707..1112144	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFTE010000019.1 Salmonella enterica strain PNUSAS344673 SAMN34365130-rid17767003.denovo.22, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFTE010000019.1 Salmonella enterica strain PNUSAS344673 SAMN34365130-rid17767003.denovo.22, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFTE010000019.1 Salmonella enterica strain PNUSAS344673 SAMN34365130-rid17767003.denovo.22, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFTE010000019.1 Salmonella enterica strain PNUSAS344673 SAMN34365130-rid17767003.denovo.22, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFTE010000019.1 Salmonella enterica strain PNUSAS344673 SAMN34365130-rid17767003.denovo.22, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNFTE010000031.1 Salmonella enterica strain PNUSAS344673 SAMN34365130-rid17767003.guided.18, whole genome shotgun sequence	31775..32212	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFTE010000035.1 Salmonella enterica strain PNUSAS344673 SAMN34365130-rid17767003.guided.25, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFTE010000035.1 Salmonella enterica strain PNUSAS344673 SAMN34365130-rid17767003.guided.25, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFTE010000035.1 Salmonella enterica strain PNUSAS344673 SAMN34365130-rid17767003.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFTE010000035.1 Salmonella enterica strain PNUSAS344673 SAMN34365130-rid17767003.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFTE010000035.1 Salmonella enterica strain PNUSAS344673 SAMN34365130-rid17767003.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNFTE010000020.1 Salmonella enterica strain PNUSAS344673 SAMN34365130-rid17767003.denovo.24, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFTE010000034.1 Salmonella enterica strain PNUSAS344673 SAMN34365130-rid17767003.guided.23, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNFTE010000025.1 Salmonella enterica strain PNUSAS344673 SAMN34365130-rid17767003.denovo.30, whole genome shotgun sequence	805..997	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNFTE010000009.1 Salmonella enterica strain PNUSAS344673 SAMN34365130-rid17767003.denovo.09, whole genome shotgun sequence	14614..14755																																																avrA	ABNFTE010000003.1	603216..604085	99.655	870	0						
GCA_032281585.1_PDT001701983.1_genomic.fna	Salmonella_enterica	0.5209	278.267 KB	7	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFTD010000001.1 Salmonella enterica strain PNUSAS344681 SAMN34365362-rid17767023.denovo.01, whole genome shotgun sequence	482319..482756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFTD010000048.1 Salmonella enterica strain PNUSAS344681 SAMN34365362-rid17767023.guided.27, whole genome shotgun sequence	20481..20918	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNFTD010000021.1 Salmonella enterica strain PNUSAS344681 SAMN34365362-rid17767023.denovo.21, whole genome shotgun sequence	44835..45477	enterobacteriales	IncFII(S)	100	262 / 262	ABNFTD010000021.1 Salmonella enterica strain PNUSAS344681 SAMN34365362-rid17767023.denovo.21, whole genome shotgun sequence	29489..29750																																																avrA	ABNFTD010000004.1	174642..175511	99.885	870	0						
GCA_032281905.1_PDT001693017.1_genomic.fna	Salmonella_enterica	0.5219	84.682 KB	18	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNFTG010000023.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22312647 SAMN34234016-rid18274463.denovo.023, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFTG010000075.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22312647 SAMN34234016-rid18274463.denovo.078, whole genome shotgun sequence	5947..6783	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNFTG010000075.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22312647 SAMN34234016-rid18274463.denovo.078, whole genome shotgun sequence	4916..5729	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	V00359	aph(3'')-Ib	100	804/804	ABNFTG010000075.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22312647 SAMN34234016-rid18274463.denovo.078, whole genome shotgun sequence	6783..7586	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNFTG010000132.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22312647 SAMN34234016-rid18274463.guided.079, whole genome shotgun sequence	3874..4710	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNFTG010000132.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22312647 SAMN34234016-rid18274463.guided.079, whole genome shotgun sequence	4928..5741	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	V00359	aph(3'')-Ib	100	804/804	ABNFTG010000132.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22312647 SAMN34234016-rid18274463.guided.079, whole genome shotgun sequence	3071..3874	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNFTG010000133.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22312647 SAMN34234016-rid18274463.guided.087, whole genome shotgun sequence	5080..5517	Amikacin, Tobramycin	NC_003197	sul2	99.88	816/816	ABNFTG010000035.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22312647 SAMN34234016-rid18274463.denovo.035, whole genome shotgun sequence	44601..45416	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNFTG010000131.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22312647 SAMN34234016-rid18274463.guided.073, whole genome shotgun sequence	12298..13113	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNFTG010000091.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22312647 SAMN34234016-rid18274463.denovo.097, whole genome shotgun sequence	2279..3484	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNFTG010000134.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22312647 SAMN34234016-rid18274463.guided.096, whole genome shotgun sequence	2329..3534	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFTG010000009.1	102297..103165	99.655	869	0						
GCA_032281925.1_PDT001693016.1_genomic.fna	Salmonella_enterica	0.5191	72.473 KB	23	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFTH010000016.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312648 SAMN34234017-rid18274453.denovo.016, whole genome shotgun sequence	52260..52697	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFTH010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312648 SAMN34234017-rid18274453.denovo.051, whole genome shotgun sequence	4547..5383	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFTH010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312648 SAMN34234017-rid18274453.denovo.051, whole genome shotgun sequence	3745..4547	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFTH010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312648 SAMN34234017-rid18274453.denovo.051, whole genome shotgun sequence	3744..4547	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFTH010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312648 SAMN34234017-rid18274453.denovo.051, whole genome shotgun sequence	3744..4547	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFTH010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312648 SAMN34234017-rid18274453.denovo.051, whole genome shotgun sequence	3744..4547	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNFTH010000172.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312648 SAMN34234017-rid18274453.guided.084, whole genome shotgun sequence	13772..14209	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFTH010000175.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312648 SAMN34234017-rid18274453.guided.118, whole genome shotgun sequence	3839..4675	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFTH010000175.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312648 SAMN34234017-rid18274453.guided.118, whole genome shotgun sequence	3037..3839	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFTH010000175.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312648 SAMN34234017-rid18274453.guided.118, whole genome shotgun sequence	3036..3839	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFTH010000175.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312648 SAMN34234017-rid18274453.guided.118, whole genome shotgun sequence	3036..3839	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFTH010000175.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312648 SAMN34234017-rid18274453.guided.118, whole genome shotgun sequence	3036..3839	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNFTH010000087.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312648 SAMN34234017-rid18274453.denovo.089, whole genome shotgun sequence	2692..3018	enterobacteriales	IncHI2A	99.52	630 / 630	ABNFTH010000104.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312648 SAMN34234017-rid18274453.denovo.107, whole genome shotgun sequence	1569..2198		enterobacteriales	IncX1	100	373 / 373	ABNFTH010000143.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312648 SAMN34234017-rid18274453.denovo.147, whole genome shotgun sequence	1135..1507																																									avrA	ABNFTH010000041.1	39484..40353	99.655	870	0						
GCA_032281945.1_PDT001693013.1_genomic.fna	Salmonella_enterica	0.5223	78.779 KB	20	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFTI010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312649 SAMN34234004-rid18274443.denovo.003, whole genome shotgun sequence	13070..13507	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNFTI010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312649 SAMN34234004-rid18274443.denovo.093, whole genome shotgun sequence	1052..2077	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFTI010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312649 SAMN34234004-rid18274443.denovo.093, whole genome shotgun sequence	47..823	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNFTI010000150.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312649 SAMN34234004-rid18274443.guided.078, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNFTI010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312649 SAMN34234004-rid18274443.guided.107, whole genome shotgun sequence	1092..2117	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFTI010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312649 SAMN34234004-rid18274443.guided.107, whole genome shotgun sequence	87..863	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNFTI010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312649 SAMN34234004-rid18274443.denovo.104, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFTI010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312649 SAMN34234004-rid18274443.guided.103, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107																																																																																																																																																																																																																																																																																																																																																																																																																gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFTI010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312649 SAMN34234004-rid18274443.denovo.096, whole genome shotgun sequence	2222..2781																																																						avrA	ABNFTI010000006.1	124266..125135	99.655	870	0						
GCA_032281965.1_PDT001693010.1_genomic.fna	Salmonella_enterica	0.5239	56.533 KB	25	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFTJ010000017.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22312645 SAMN34233935-rid18274433.denovo.017, whole genome shotgun sequence	12520..12957	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFTJ010000151.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22312645 SAMN34233935-rid18274433.guided.096, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.91	132 / 130	ABNFTJ010000114.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22312645 SAMN34233935-rid18274433.denovo.118, whole genome shotgun sequence	1305..1435																																																																	
GCA_032281985.1_PDT001693006.1_genomic.fna	Salmonella_enterica	0.5228	86.523 KB	21	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFTK010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312586 SAMN34233926-rid18274423.denovo.015, whole genome shotgun sequence	83566..84003	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFTK010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312586 SAMN34233926-rid18274423.denovo.085, whole genome shotgun sequence	11988..12779	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFTK010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312586 SAMN34233926-rid18274423.denovo.085, whole genome shotgun sequence	11988..12779	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFTK010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312586 SAMN34233926-rid18274423.denovo.107, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFTK010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312586 SAMN34233926-rid18274423.denovo.107, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNFTK010000151.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312586 SAMN34233926-rid18274423.guided.052, whole genome shotgun sequence	15454..15891	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFTK010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312586 SAMN34233926-rid18274423.guided.084, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFTK010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312586 SAMN34233926-rid18274423.guided.084, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFTK010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312586 SAMN34233926-rid18274423.guided.117, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFTK010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312586 SAMN34233926-rid18274423.guided.117, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNFTK010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312586 SAMN34233926-rid18274423.denovo.085, whole genome shotgun sequence	10644..11483	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFTK010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312586 SAMN34233926-rid18274423.guided.084, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFTK010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312586 SAMN34233926-rid18274423.denovo.095, whole genome shotgun sequence	1809..3008	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFTK010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312586 SAMN34233926-rid18274423.guided.094, whole genome shotgun sequence	1840..3039	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFTK010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312586 SAMN34233926-rid18274423.denovo.076, whole genome shotgun sequence	13283..13842																																																						avrA	ABNFTK010000010.1	81701..82570	99.655	870	0						
GCA_032282045.1_PDT001689303.1_genomic.fna	Salmonella_enterica	0.5235	48.175 KB	32	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFTN010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312606 SAMN34169280-rid18274293.denovo.084, whole genome shotgun sequence	12484..12921	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFTN010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312606 SAMN34169280-rid18274293.denovo.110, whole genome shotgun sequence	11916..12707	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFTN010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312606 SAMN34169280-rid18274293.denovo.110, whole genome shotgun sequence	11916..12707	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNFTN010000209.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312606 SAMN34169280-rid18274293.guided.105, whole genome shotgun sequence	3598..4035	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFTN010000210.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312606 SAMN34169280-rid18274293.guided.109, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFTN010000210.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312606 SAMN34169280-rid18274293.guided.109, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNFTN010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312606 SAMN34169280-rid18274293.denovo.110, whole genome shotgun sequence	10572..11411	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFTN010000210.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312606 SAMN34169280-rid18274293.guided.109, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFTN010000137.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312606 SAMN34169280-rid18274293.denovo.142, whole genome shotgun sequence	1847..3046	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFTN010000212.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312606 SAMN34169280-rid18274293.guided.141, whole genome shotgun sequence	1819..3018	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFTN010000161.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312606 SAMN34169280-rid18274293.denovo.166, whole genome shotgun sequence	977..1536																																																						avrA	ABNFTN010000009.1	81424..82293	99.655	870	0						
GCA_032282065.1_PDT001692898.1_genomic.fna	Salmonella_enterica	0.5223	54.662 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFTM010000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312585 SAMN34233925-rid18274313.denovo.022, whole genome shotgun sequence	12481..12918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFTM010000157.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312585 SAMN34233925-rid18274313.guided.092, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNFTM010000061.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312585 SAMN34233925-rid18274313.denovo.061, whole genome shotgun sequence	14271..15416	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNFTM010000155.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312585 SAMN34233925-rid18274313.guided.064, whole genome shotgun sequence	13901..15046	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNFTM010000087.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312585 SAMN34233925-rid18274313.denovo.089, whole genome shotgun sequence	3296..4111	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFTM010000159.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312585 SAMN34233925-rid18274313.guided.118, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNFTM010000087.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312585 SAMN34233925-rid18274313.denovo.089, whole genome shotgun sequence	6288..7487	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFTM010000159.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312585 SAMN34233925-rid18274313.guided.118, whole genome shotgun sequence	4544..5743	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNFTM010000121.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312585 SAMN34233925-rid18274313.denovo.126, whole genome shotgun sequence	371..501	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNFTM010000123.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312585 SAMN34233925-rid18274313.denovo.128, whole genome shotgun sequence	3134..3264		enterobacteriales	Col(pHAD28)	93.02	129 / 131	ABNFTM010000132.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312585 SAMN34233925-rid18274313.denovo.137, whole genome shotgun sequence	1391..1519		enterobacteriales	IncC	100	417 / 417	ABNFTM010000043.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312585 SAMN34233925-rid18274313.denovo.043, whole genome shotgun sequence	37304..37720																																		avrA	ABNFTM010000005.1	106262..107131	99.885	870	0						
GCA_032282765.1_PDT001911173.1_genomic.fna	Salmonella_enterica	0.5216	276.856 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,qnrB7,qnrB7	1	parC_p.T57S	2	Col(pHAD28),IncX3	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFTU010000001.1 Salmonella enterica strain PNUSAS387793 SAMN37642990-rid19570413.denovo.01, whole genome shotgun sequence	527446..527883	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFTU010000044.1 Salmonella enterica strain PNUSAS387793 SAMN37642990-rid19570413.guided.21, whole genome shotgun sequence	44307..44744	Amikacin, Tobramycin	NC_003197	qnrB7	100	645/645	ABNFTU010000023.1 Salmonella enterica strain PNUSAS387793 SAMN37642990-rid19570413.denovo.24, whole genome shotgun sequence	13130..13774	Ciprofloxacin	EU043311	qnrB7	100	645/645	ABNFTU010000047.1 Salmonella enterica strain PNUSAS387793 SAMN37642990-rid19570413.guided.43, whole genome shotgun sequence	115..759	Ciprofloxacin	EU043311																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.91	132 / 131	ABNFTU010000032.1 Salmonella enterica strain PNUSAS387793 SAMN37642990-rid19570413.denovo.35, whole genome shotgun sequence	3682..3812	enterobacteriales	IncX3	100	374 / 374	ABNFTU010000023.1 Salmonella enterica strain PNUSAS387793 SAMN37642990-rid19570413.denovo.24, whole genome shotgun sequence	6562..6935																																																avrA	ABNFTU010000010.1	39473..40342	98.966	870	0						
GCA_032282785.1_PDT001911171.1_genomic.fna	Salmonella_enterica	0.5218	224.073 KB	6	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNFTV010000001.1 Salmonella enterica strain PNUSAS387791 SAMN37642989-rid19570173.denovo.01, whole genome shotgun sequence	564736..565173	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNFTV010000032.1 Salmonella enterica strain PNUSAS387791 SAMN37642989-rid19570173.guided.23, whole genome shotgun sequence	5650..6087	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFTV010000002.1	516882..517751	99.77	870	0						
GCA_032282805.1_PDT001911172.1_genomic.fna	Salmonella_enterica	0.5219	200.075 KB	7	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNFTT010000002.1 Salmonella enterica strain PNUSAS387798 SAMN37642995-rid19570403.denovo.02, whole genome shotgun sequence	37865..38302	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNFTT010000044.1 Salmonella enterica strain PNUSAS387798 SAMN37642995-rid19570403.guided.28, whole genome shotgun sequence	15153..15590	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFTT010000006.1	39348..40217	99.77	870	0						
GCA_032282825.1_PDT001911169.1_genomic.fna	Salmonella_enterica	0.5211	316.421 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFTX010000007.1 Salmonella enterica strain PNUSAS387790 SAMN37642988-rid19570383.denovo.07, whole genome shotgun sequence	128545..128982	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFTX010000048.1 Salmonella enterica strain PNUSAS387790 SAMN37642988-rid19570383.guided.32, whole genome shotgun sequence	773..1210	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFTX010000018.1	39348..40216	99.195	870	0						
GCA_032282845.1_PDT001911166.1_genomic.fna	Salmonella_enterica	0.5226	396.935 KB	6	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNFTW010000007.1 Salmonella enterica strain PNUSAS387792 SAMN37642996-rid19570163.denovo.07, whole genome shotgun sequence	176427..176864	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNFTW010000037.1 Salmonella enterica strain PNUSAS387792 SAMN37642996-rid19570163.guided.28, whole genome shotgun sequence	746..1183	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFTW010000011.1	39347..40216	99.31	870	0						
GCA_032282865.1_PDT001911164.1_genomic.fna	Salmonella_enterica	0.5213	304.283 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFTY010000002.1 Salmonella enterica strain PNUSAS387789 SAMN37642987-rid19570343.denovo.02, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFTY010000034.1 Salmonella enterica strain PNUSAS387789 SAMN37642987-rid19570343.guided.25, whole genome shotgun sequence	3441..3878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFTY010000017.1 Salmonella enterica strain PNUSAS387789 SAMN37642987-rid19570343.denovo.17, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	ABNFTY010000017.1 Salmonella enterica strain PNUSAS387789 SAMN37642987-rid19570343.denovo.17, whole genome shotgun sequence	51879..52140																																																avrA	ABNFTY010000001.1	584926..585795	99.54	870	0						
GCA_032282885.1_PDT001911163.1_genomic.fna	Salmonella_enterica	0.5229	397.205 KB	6	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNFUA010000004.1 Salmonella enterica strain PNUSAS387797 SAMN37642994-rid19570333.denovo.04, whole genome shotgun sequence	255959..256396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNFUA010000030.1 Salmonella enterica strain PNUSAS387797 SAMN37642994-rid19570333.guided.22, whole genome shotgun sequence	9589..10026	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFUA010000001.1	509131..510000	99.31	870	0						
GCA_032282905.1_PDT001911161.1_genomic.fna	Salmonella_enterica	0.5217	521.963 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFTZ010000001.1 Salmonella enterica strain PNUSAS387796 SAMN37642993-rid19570153.denovo.01, whole genome shotgun sequence	841015..841452	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNFTZ010000025.1 Salmonella enterica strain PNUSAS387796 SAMN37642993-rid19570153.guided.16, whole genome shotgun sequence	26575..27012	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNFTZ010000013.1 Salmonella enterica strain PNUSAS387796 SAMN37642993-rid19570153.denovo.13, whole genome shotgun sequence	67086..67227																																																						avrA	ABNFTZ010000007.1	39458..40327	99.655	870	0						
GCA_032282925.1_PDT001911157.1_genomic.fna	Salmonella_enterica	0.5218	326.647 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col8282,IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNFUD010000001.1 Salmonella enterica strain PNUSAS387772 SAMN37642379-rid19570283.denovo.01, whole genome shotgun sequence	177349..177786	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNFUD010000033.1 Salmonella enterica strain PNUSAS387772 SAMN37642379-rid19570283.guided.26, whole genome shotgun sequence	2954..3391	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col8282	90.1	202 / 207	ABNFUD010000024.1 Salmonella enterica strain PNUSAS387772 SAMN37642379-rid19570283.denovo.28, whole genome shotgun sequence	416..617	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNFUD010000017.1 Salmonella enterica strain PNUSAS387772 SAMN37642379-rid19570283.denovo.17, whole genome shotgun sequence	72237..72378																																																avrA	ABNFUD010000002.1	563192..564061	99.77	870	0						
GCA_032282945.1_PDT001911156.1_genomic.fna	Salmonella_enterica	0.5223	250.065 KB	7	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFUB010000003.1 Salmonella enterica strain PNUSAS387771 SAMN37642380-rid19570143.denovo.03, whole genome shotgun sequence	169252..169689	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFUB010000033.1 Salmonella enterica strain PNUSAS387771 SAMN37642380-rid19570143.guided.23, whole genome shotgun sequence	1294..1731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFUB010000002.1	39488..40357	98.851	870	0						
GCA_032282965.1_PDT001911155.1_genomic.fna	Salmonella_enterica	0.5218	249.827 KB	7	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFUC010000004.1 Salmonella enterica strain PNUSAS387769 SAMN37642382-rid19570273.denovo.04, whole genome shotgun sequence	136549..136986	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFUC010000046.1 Salmonella enterica strain PNUSAS387769 SAMN37642382-rid19570273.guided.35, whole genome shotgun sequence	599..1036	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFUC010000002.1	39471..40337	99.08	870	0						
GCA_032282985.1_PDT001911154.1_genomic.fna	Salmonella_enterica	0.5225	290.4 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFUF010000002.1 Salmonella enterica strain PNUSAS387770 SAMN37642381-rid19570133.denovo.02, whole genome shotgun sequence	173796..174233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFUF010000035.1 Salmonella enterica strain PNUSAS387770 SAMN37642381-rid19570133.guided.27, whole genome shotgun sequence	1787..2224	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFUF010000003.1	94848..95717	98.966	870	0						
GCA_032282995.1_PDT001911153.1_genomic.fna	Salmonella_enterica	0.5212	318.229 KB	6	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFUE010000007.1 Salmonella enterica strain PNUSAS387773 SAMN37642386-rid19570263.denovo.07, whole genome shotgun sequence	145331..145768	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNFUE010000050.1 Salmonella enterica strain PNUSAS387773 SAMN37642386-rid19570263.guided.24, whole genome shotgun sequence	20038..20475	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNFUE010000030.1 Salmonella enterica strain PNUSAS387773 SAMN37642386-rid19570263.denovo.32, whole genome shotgun sequence	10066..10971	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNFUE010000052.1 Salmonella enterica strain PNUSAS387773 SAMN37642386-rid19570263.guided.35, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNFUE010000033.1 Salmonella enterica strain PNUSAS387773 SAMN37642386-rid19570263.denovo.36, whole genome shotgun sequence	620..1833	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFUE010000054.1 Salmonella enterica strain PNUSAS387773 SAMN37642386-rid19570263.guided.41, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNFUE010000030.1 Salmonella enterica strain PNUSAS387773 SAMN37642386-rid19570263.denovo.32, whole genome shotgun sequence	3916..4755	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFUE010000053.1 Salmonella enterica strain PNUSAS387773 SAMN37642386-rid19570263.guided.38, whole genome shotgun sequence	3957..4796	Sulfamethoxazole	U12338	tet(A)	100	1240/1275	ABNFUE010000030.1 Salmonella enterica strain PNUSAS387773 SAMN37642386-rid19570263.denovo.32, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNFUE010000053.1 Salmonella enterica strain PNUSAS387773 SAMN37642386-rid19570263.guided.38, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNFUE010000030.1 Salmonella enterica strain PNUSAS387773 SAMN37642386-rid19570263.denovo.32, whole genome shotgun sequence	2398..2871	Trimethoprim	X00926	dfrA1	100	474/474	ABNFUE010000053.1 Salmonella enterica strain PNUSAS387773 SAMN37642386-rid19570263.guided.38, whole genome shotgun sequence	2439..2912	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNFUE010000028.1 Salmonella enterica strain PNUSAS387773 SAMN37642386-rid19570263.denovo.30, whole genome shotgun sequence	8376..8626																																																						avrA	ABNFUE010000001.1	552956..553825	99.77	870	0						
GCA_032283025.1_PDT001911150.1_genomic.fna	Salmonella_enterica	0.52	264.201 KB	7	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_4	371	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNFUG010000002.1 Salmonella enterica strain PNUSAS387775 SAMN37642384-rid19570243.denovo.02, whole genome shotgun sequence	295481..295918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNFUG010000044.1 Salmonella enterica strain PNUSAS387775 SAMN37642384-rid19570243.guided.31, whole genome shotgun sequence	11803..12240	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNFUG010000022.1 Salmonella enterica strain PNUSAS387775 SAMN37642384-rid19570243.denovo.22, whole genome shotgun sequence	5328..5970																																																						avrA	ABNFUG010000003.1	39449..40318	99.54	870	0						
GCA_032283125.1_PDT001911138.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFUM010000001.1 Salmonella enterica strain PNUSAS387768 SAMN37642174-rid19570003.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFUM010000024.1 Salmonella enterica strain PNUSAS387768 SAMN37642174-rid19570003.guided.20, whole genome shotgun sequence	3522..3959	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFUM010000018.1 Salmonella enterica strain PNUSAS387768 SAMN37642174-rid19570003.denovo.18, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNFUM010000019.1 Salmonella enterica strain PNUSAS387768 SAMN37642174-rid19570003.denovo.19, whole genome shotgun sequence	3409..3670																																																avrA	ABNFUM010000002.1	553635..554504	99.54	870	0						
GCA_032283745.1_PDT001911170.1_genomic.fna	Salmonella_enterica	0.5205	478.588 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFUP010000002.1 Salmonella enterica strain PNUSAS387795 SAMN37642992-rid19570393.denovo.02, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFUP010000026.1 Salmonella enterica strain PNUSAS387795 SAMN37642992-rid19570393.guided.21, whole genome shotgun sequence	27312..27749	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFUP010000018.1 Salmonella enterica strain PNUSAS387795 SAMN37642992-rid19570393.denovo.18, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNFUP010000018.1 Salmonella enterica strain PNUSAS387795 SAMN37642992-rid19570393.denovo.18, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNFUP010000019.1 Salmonella enterica strain PNUSAS387795 SAMN37642992-rid19570393.denovo.19, whole genome shotgun sequence	32011..32384																																									avrA	ABNFUP010000001.1	553070..553939	99.54	870	0						
GCA_032284105.1_PDT001911159.1_genomic.fna	Salmonella_enterica	0.5218	324.408 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFUR010000002.1 Salmonella enterica strain PNUSAS387794 SAMN37642991-rid19570303.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFUR010000049.1 Salmonella enterica strain PNUSAS387794 SAMN37642991-rid19570303.guided.24, whole genome shotgun sequence	15341..15778	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNFUR010000016.1 Salmonella enterica strain PNUSAS387794 SAMN37642991-rid19570303.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNFUR010000016.1 Salmonella enterica strain PNUSAS387794 SAMN37642991-rid19570303.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABNFUR010000003.1	401307..402175	100	869	0						
GCA_032284185.1_PDT001911151.1_genomic.fna	Salmonella_enterica	0.5224	203.226 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFUT010000001.1 Salmonella enterica strain PNUSAS387776 SAMN37642383-rid19570123.denovo.01, whole genome shotgun sequence	408701..409138	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFUT010000052.1 Salmonella enterica strain PNUSAS387776 SAMN37642383-rid19570123.guided.31, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032284225.1_PDT001911124.1_genomic.fna	Salmonella_enterica	0.5221	405.423 KB	5	aroC_6,dnaN_71,hemD_18,hisD_971,purE_1286,sucA_187,thrA_12	8298	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_71	hemD	100	100	hemD_18	hisD	100	100	hisD_971	purE	100	100	purE_1286	sucA	100	100	sucA_187	thrA	100	100	thrA_12	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFUU010000004.1 Salmonella enterica strain PNUSAS387767 SAMN37642177-rid19569863.denovo.04, whole genome shotgun sequence	366112..366549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFUU010000028.1 Salmonella enterica strain PNUSAS387767 SAMN37642177-rid19569863.guided.22, whole genome shotgun sequence	7061..7498	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFUU010000001.1	139603..140472	98.966	870	0						
GCA_032284245.1_PDT001911152.1_genomic.fna	Salmonella_enterica	0.5211	318.26 KB	6	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFUX010000007.1 Salmonella enterica strain PNUSAS387774 SAMN37642385-rid19570253.denovo.07, whole genome shotgun sequence	144756..145193	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNFUX010000046.1 Salmonella enterica strain PNUSAS387774 SAMN37642385-rid19570253.guided.30, whole genome shotgun sequence	7928..8365	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNFUX010000027.1 Salmonella enterica strain PNUSAS387774 SAMN37642385-rid19570253.denovo.29, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNFUX010000049.1 Salmonella enterica strain PNUSAS387774 SAMN37642385-rid19570253.guided.41, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNFUX010000027.1 Salmonella enterica strain PNUSAS387774 SAMN37642385-rid19570253.denovo.29, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFUX010000048.1 Salmonella enterica strain PNUSAS387774 SAMN37642385-rid19570253.guided.39, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNFUX010000027.1 Salmonella enterica strain PNUSAS387774 SAMN37642385-rid19570253.denovo.29, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFUX010000047.1 Salmonella enterica strain PNUSAS387774 SAMN37642385-rid19570253.guided.35, whole genome shotgun sequence	2982..3821	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNFUX010000027.1 Salmonella enterica strain PNUSAS387774 SAMN37642385-rid19570253.denovo.29, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNFUX010000047.1 Salmonella enterica strain PNUSAS387774 SAMN37642385-rid19570253.guided.35, whole genome shotgun sequence	6497..7771	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNFUX010000027.1 Salmonella enterica strain PNUSAS387774 SAMN37642385-rid19570253.denovo.29, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNFUX010000047.1 Salmonella enterica strain PNUSAS387774 SAMN37642385-rid19570253.guided.35, whole genome shotgun sequence	4866..5339	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNFUX010000028.1 Salmonella enterica strain PNUSAS387774 SAMN37642385-rid19570253.denovo.31, whole genome shotgun sequence	8313..8563																																																						avrA	ABNFUX010000001.1	552956..553825	99.77	870	0						
GCA_032284285.1_PDT001911446.1_genomic.fna	Salmonella_enterica	0.5215	321.414 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFUZ010000001.1 Salmonella enterica strain PNUSAS387851 SAMN37643230-rid19571113.denovo.01, whole genome shotgun sequence	497839..498276	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFUZ010000037.1 Salmonella enterica strain PNUSAS387851 SAMN37643230-rid19571113.guided.25, whole genome shotgun sequence	6770..7207	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFUZ010000008.1	140447..141316	99.54	870	0						
GCA_032284425.1_PDT001911471.1_genomic.fna	Salmonella_enterica	0.5203	490.115 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFVA010000001.1 Salmonella enterica strain PNUSAS387936 SAMN37643290-rid19571163.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFVA010000025.1 Salmonella enterica strain PNUSAS387936 SAMN37643290-rid19571163.guided.16, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFVA010000018.1 Salmonella enterica strain PNUSAS387936 SAMN37643290-rid19571163.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNFVA010000014.1 Salmonella enterica strain PNUSAS387936 SAMN37643290-rid19571163.denovo.14, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNFVA010000015.1 Salmonella enterica strain PNUSAS387936 SAMN37643290-rid19571163.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNFVA010000002.1	553690..554559	99.54	870	0						
GCA_032284445.1_PDT001911466.1_genomic.fna	Salmonella_enterica	0.5203	707.997 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	ColRNAI,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFVC010000001.1 Salmonella enterica strain PNUSAS387935 SAMN37643285-rid19571153.denovo.01, whole genome shotgun sequence	733711..734148	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFVC010000024.1 Salmonella enterica strain PNUSAS387935 SAMN37643285-rid19571153.guided.17, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABNFVC010000017.1 Salmonella enterica strain PNUSAS387935 SAMN37643285-rid19571153.denovo.20, whole genome shotgun sequence	3981..4111	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFVC010000014.1 Salmonella enterica strain PNUSAS387935 SAMN37643285-rid19571153.denovo.14, whole genome shotgun sequence	36760..37402		enterobacteriales	IncFII(S)	100	262 / 262	ABNFVC010000014.1 Salmonella enterica strain PNUSAS387935 SAMN37643285-rid19571153.denovo.14, whole genome shotgun sequence	51843..52104		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNFVC010000012.1 Salmonella enterica strain PNUSAS387935 SAMN37643285-rid19571153.denovo.12, whole genome shotgun sequence	79861..80002																																		avrA	ABNFVC010000002.1	584527..585396	99.54	870	0						
GCA_032284465.1_PDT001911441.1_genomic.fna	Salmonella_enterica	0.5209	412.066 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFVD010000001.1 Salmonella enterica strain PNUSAS387839 SAMN37643237-rid19571103.denovo.01, whole genome shotgun sequence	385109..385546	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFVD010000047.1 Salmonella enterica strain PNUSAS387839 SAMN37643237-rid19571103.guided.19, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFVD010000002.1	504316..505186	99.196	871	0						
GCA_032284505.1_PDT001911436.1_genomic.fna	Salmonella_enterica	0.5218	443.053 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFVF010000001.1 Salmonella enterica strain PNUSAS387835 SAMN37643215-rid19571093.denovo.01, whole genome shotgun sequence	1111739..1112176	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFVF010000024.1 Salmonella enterica strain PNUSAS387835 SAMN37643215-rid19571093.guided.17, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFVF010000009.1	150693..151563	99.196	871	0						
GCA_032284525.1_PDT001911431.1_genomic.fna	Salmonella_enterica	0.5196	433.484 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87G,parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNFVE010000002.1 Salmonella enterica strain PNUSAS387890 SAMN37643195-rid19571083.denovo.02, whole genome shotgun sequence	467375..467812	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNFVE010000031.1 Salmonella enterica strain PNUSAS387890 SAMN37643195-rid19571083.guided.12, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032284665.1_PDT001911547.1_genomic.fna	Salmonella_enterica	0.5204	492.251 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFVI010000001.1 Salmonella enterica strain PNUSAS387929 SAMN37643287-rid19573333.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFVI010000026.1 Salmonella enterica strain PNUSAS387929 SAMN37643287-rid19573333.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFVI010000017.1 Salmonella enterica strain PNUSAS387929 SAMN37643287-rid19573333.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNFVI010000018.1 Salmonella enterica strain PNUSAS387929 SAMN37643287-rid19573333.denovo.20, whole genome shotgun sequence	3414..3675		enterobacteriales	IncX1	98.93	374 / 374	ABNFVI010000013.1 Salmonella enterica strain PNUSAS387929 SAMN37643287-rid19573333.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNFVI010000002.1	553684..554553	99.54	870	0						
GCA_032284705.1_PDT001911468.1_genomic.fna	Salmonella_enterica	0.5213	478.76 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFVJ010000001.1 Salmonella enterica strain PNUSAS387937 SAMN37643284-rid19573273.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFVJ010000030.1 Salmonella enterica strain PNUSAS387937 SAMN37643284-rid19573273.guided.17, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFVJ010000018.1 Salmonella enterica strain PNUSAS387937 SAMN37643284-rid19573273.denovo.20, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABNFVJ010000020.1 Salmonella enterica strain PNUSAS387937 SAMN37643284-rid19573273.denovo.22, whole genome shotgun sequence	3415..3676																																																avrA	ABNFVJ010000002.1	553678..554547	99.54	870	0						
GCA_032284725.1_PDT001911458.1_genomic.fna	Salmonella_enterica	0.5199	368.134 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFVK010000001.1 Salmonella enterica strain PNUSAS387933 SAMN37643283-rid19573233.denovo.01, whole genome shotgun sequence	486102..486539	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFVK010000034.1 Salmonella enterica strain PNUSAS387933 SAMN37643283-rid19573233.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNFVK010000005.1 Salmonella enterica strain PNUSAS387933 SAMN37643283-rid19573233.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNFVK010000032.1 Salmonella enterica strain PNUSAS387933 SAMN37643283-rid19573233.guided.24, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFVK010000002.1	173924..174793	99.195	870	0						
GCA_032284765.1_PDT001911449.1_genomic.fna	Salmonella_enterica	0.5215	406.863 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNFVM010000002.1 Salmonella enterica strain PNUSAS387841 SAMN37643238-rid19572643.denovo.02, whole genome shotgun sequence	136212..136649	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNFVM010000046.1 Salmonella enterica strain PNUSAS387841 SAMN37643238-rid19572643.guided.33, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFVM010000001.1	446372..447241	99.655	870	0						
GCA_032284785.1_PDT001911447.1_genomic.fna	Salmonella_enterica	0.5206	366.879 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFVN010000001.1 Salmonella enterica strain PNUSAS387840 SAMN37643235-rid19572633.denovo.01, whole genome shotgun sequence	385109..385546	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFVN010000052.1 Salmonella enterica strain PNUSAS387840 SAMN37643235-rid19572633.guided.20, whole genome shotgun sequence	12387..12824	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFVN010000012.1	93255..94125	99.196	871	0						
GCA_032284805.1_PDT001911445.1_genomic.fna	Salmonella_enterica	0.5212	405.388 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFVO010000001.1 Salmonella enterica strain PNUSAS387838 SAMN37643236-rid19572623.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFVO010000029.1 Salmonella enterica strain PNUSAS387838 SAMN37643236-rid19572623.guided.20, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFVO010000017.1 Salmonella enterica strain PNUSAS387838 SAMN37643236-rid19572623.denovo.19, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNFVO010000018.1 Salmonella enterica strain PNUSAS387838 SAMN37643236-rid19572623.denovo.21, whole genome shotgun sequence	3414..3675																																																avrA	ABNFVO010000004.1	140720..141589	99.54	870	0						
GCA_032284825.1_PDT001911444.1_genomic.fna	Salmonella_enterica	0.521	430.359 KB	4	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFVP010000001.1 Salmonella enterica strain PNUSAS387850 SAMN37643229-rid19572613.denovo.01, whole genome shotgun sequence	681169..681606	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFVP010000026.1 Salmonella enterica strain PNUSAS387850 SAMN37643229-rid19572613.denovo.29, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFVP010000026.1 Salmonella enterica strain PNUSAS387850 SAMN37643229-rid19572613.denovo.29, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFVP010000026.1 Salmonella enterica strain PNUSAS387850 SAMN37643229-rid19572613.denovo.29, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFVP010000026.1 Salmonella enterica strain PNUSAS387850 SAMN37643229-rid19572613.denovo.29, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFVP010000026.1 Salmonella enterica strain PNUSAS387850 SAMN37643229-rid19572613.denovo.29, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNFVP010000039.1 Salmonella enterica strain PNUSAS387850 SAMN37643229-rid19572613.guided.26, whole genome shotgun sequence	5286..5723	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFVP010000041.1 Salmonella enterica strain PNUSAS387850 SAMN37643229-rid19572613.guided.30, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFVP010000041.1 Salmonella enterica strain PNUSAS387850 SAMN37643229-rid19572613.guided.30, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFVP010000041.1 Salmonella enterica strain PNUSAS387850 SAMN37643229-rid19572613.guided.30, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFVP010000041.1 Salmonella enterica strain PNUSAS387850 SAMN37643229-rid19572613.guided.30, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFVP010000041.1 Salmonella enterica strain PNUSAS387850 SAMN37643229-rid19572613.guided.30, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNFVP010000028.1 Salmonella enterica strain PNUSAS387850 SAMN37643229-rid19572613.denovo.33, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFVP010000042.1 Salmonella enterica strain PNUSAS387850 SAMN37643229-rid19572613.guided.31, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.93	374 / 374	ABNFVP010000022.1 Salmonella enterica strain PNUSAS387850 SAMN37643229-rid19572613.denovo.22, whole genome shotgun sequence	772..1145																																																						avrA	ABNFVP010000003.1	422352..423221	99.655	870	0						
GCA_032284845.1_PDT001911443.1_genomic.fna	Salmonella_enterica	0.5214	191.426 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFVQ010000001.1 Salmonella enterica strain PNUSAS387829 SAMN37643234-rid19573203.denovo.01, whole genome shotgun sequence	233303..233740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFVQ010000049.1 Salmonella enterica strain PNUSAS387829 SAMN37643234-rid19573203.guided.30, whole genome shotgun sequence	20587..21024	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFVQ010000006.1	94133..95001	99.77	870	0						
GCA_032284865.1_PDT001911442.1_genomic.fna	Salmonella_enterica	0.5211	376.462 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFVR010000001.1 Salmonella enterica strain PNUSAS387831 SAMN37643239-rid19572603.denovo.01, whole genome shotgun sequence	384606..385043	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFVR010000047.1 Salmonella enterica strain PNUSAS387831 SAMN37643239-rid19572603.guided.30, whole genome shotgun sequence	2715..3152	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFVR010000002.1	504116..504986	99.196	871	0						
GCA_032284885.1_PDT001911439.1_genomic.fna	Salmonella_enterica	0.5211	225.555 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFVS010000001.1 Salmonella enterica strain PNUSAS387849 SAMN37643232-rid19572583.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFVS010000047.1 Salmonella enterica strain PNUSAS387849 SAMN37643232-rid19572583.guided.27, whole genome shotgun sequence	13234..13671	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNFVS010000018.1 Salmonella enterica strain PNUSAS387849 SAMN37643232-rid19572583.denovo.18, whole genome shotgun sequence	48436..49078	enterobacteriales	IncFII(S)	100	262 / 262	ABNFVS010000018.1 Salmonella enterica strain PNUSAS387849 SAMN37643232-rid19572583.denovo.18, whole genome shotgun sequence	64163..64424																																																avrA	ABNFVS010000003.1	155216..156084	100	869	0						
GCA_032284925.1_PDT001911432.1_genomic.fna	Salmonella_enterica	0.5183	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	2	acrB_p.R717L,gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNFVV010000010.1 Salmonella enterica strain PNUSAS387906 SAMN37643194-rid19572533.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNFVV010000057.1 Salmonella enterica strain PNUSAS387906 SAMN37643194-rid19572533.guided.28, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										acrB p.R717L	CGA -> CTA	R -> L	Azithromycin	-	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																	
GCA_032284945.1_PDT001911422.1_genomic.fna	Salmonella_enterica	0.5202	490.113 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFVX010000001.1 Salmonella enterica strain PNUSAS387905 SAMN37643162-rid19572463.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFVX010000019.1 Salmonella enterica strain PNUSAS387905 SAMN37643162-rid19572463.guided.10, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABNFVX010000011.1 Salmonella enterica strain PNUSAS387905 SAMN37643162-rid19572463.denovo.13, whole genome shotgun sequence	32011..32384																																																						avrA	ABNFVX010000002.1	553463..554332	99.54	870	0						
GCA_032284965.1_PDT001911433.1_genomic.fna	Salmonella_enterica	0.5215	440.022 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFVU010000001.1 Salmonella enterica strain PNUSAS387833 SAMN37643217-rid19572543.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFVU010000026.1 Salmonella enterica strain PNUSAS387833 SAMN37643217-rid19572543.guided.20, whole genome shotgun sequence	11142..11579	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFVU010000018.1 Salmonella enterica strain PNUSAS387833 SAMN37643217-rid19572543.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNFVU010000019.1 Salmonella enterica strain PNUSAS387833 SAMN37643217-rid19572543.denovo.22, whole genome shotgun sequence	3423..3684																																																avrA	ABNFVU010000003.1	175197..176066	99.54	870	0						
GCA_032284985.1_PDT001911435.1_genomic.fna	Salmonella_enterica	0.5225	338.044 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFVT010000001.1 Salmonella enterica strain PNUSAS387830 SAMN37643216-rid19572563.denovo.01, whole genome shotgun sequence	15809..16246	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFVT010000035.1 Salmonella enterica strain PNUSAS387830 SAMN37643216-rid19572563.guided.22, whole genome shotgun sequence	9225..9662	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032285005.1_PDT001911429.1_genomic.fna	Salmonella_enterica	0.5221	664.749 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	ABNFVW010000001.1 Salmonella enterica strain PNUSAS387904 SAMN37643164-rid19572513.denovo.01, whole genome shotgun sequence	484963..485400	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABNFVW010000019.1 Salmonella enterica strain PNUSAS387904 SAMN37643164-rid19572513.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFVW010000009.1 Salmonella enterica strain PNUSAS387904 SAMN37643164-rid19572513.denovo.09, whole genome shotgun sequence	47171..47813	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNFVW010000009.1 Salmonella enterica strain PNUSAS387904 SAMN37643164-rid19572513.denovo.09, whole genome shotgun sequence	62649..62908																																																avrA	ABNFVW010000003.1	505008..505877	99.54	870	0						
GCA_032285025.1_PDT001911418.1_genomic.fna	Salmonella_enterica	0.5189	407.419 KB	5	aroC_499,dnaN_463,hemD_10,hisD_36,purE_25,sucA_46,thrA_36	2133	4:z29:-	7	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,blaTEM-176,blaTEM-176,floR,floR,qnrS1,qnrS1,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	3	Col(IRGK),ColRNAI,IncX1	aroC	100	100	aroC_499	dnaN	100	100	dnaN_463	hemD	100	100	hemD_10	hisD	100	100	hisD_36	purE	100	100	purE_25	sucA	100	100	sucA_46	thrA	100	100	thrA_36	4	z29	-	Salmonella enterica subspecies enterica (subspecies I)	Brancaster		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNFVY010000009.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.denovo.09, whole genome shotgun sequence	158446..158883	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.88	816/816	ABNFVY010000017.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.denovo.20, whole genome shotgun sequence	26001..26816	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EF015636	aac(6')-Iaa	98.17	438/438	ABNFVY010000036.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.guided.13, whole genome shotgun sequence	16454..16891	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.88	816/816	ABNFVY010000039.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.guided.23, whole genome shotgun sequence	148..963	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EF015636	blaTEM-176	100	861/861	ABNFVY010000017.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.denovo.20, whole genome shotgun sequence	71..931	Unknown Beta-lactam	GU550123	blaTEM-176	100	861/861	ABNFVY010000041.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.guided.30, whole genome shotgun sequence	111..971	Unknown Beta-lactam	GU550123	floR	98.11	1214/1215	ABNFVY010000022.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.denovo.27, whole genome shotgun sequence	966..2179	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNFVY010000040.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.guided.25, whole genome shotgun sequence	3744..4957	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNFVY010000026.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.denovo.33, whole genome shotgun sequence	736..1392	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNFVY010000042.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.guided.32, whole genome shotgun sequence	594..1250	Ciprofloxacin	AB187515	tet(A)	100	1275/1275	ABNFVY010000022.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.denovo.27, whole genome shotgun sequence	2780..4054	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNFVY010000040.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.guided.25, whole genome shotgun sequence	1869..3143	Doxycycline, Tetracycline	AF534183	dfrA14	100	474/474	ABNFVY010000027.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.denovo.35, whole genome shotgun sequence	183..656	Trimethoprim	KF921535	dfrA14	100	474/474	ABNFVY010000043.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.guided.34, whole genome shotgun sequence	1200..1673	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(IRGK)	98.37	184 / 184	ABNFVY010000025.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.denovo.31, whole genome shotgun sequence	1776..1959	enterobacteriales	ColRNAI	90.08	131 / 130	ABNFVY010000023.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.denovo.28, whole genome shotgun sequence	3981..4111		enterobacteriales	IncX1	98.93	374 / 374	ABNFVY010000017.1 Salmonella enterica strain PNUSAS387896 SAMN37643161-rid19573173.denovo.20, whole genome shotgun sequence	5058..5431																																									avrA	ABNFVY010000001.1	185326..186195	99.655	870	0						
GCA_032285065.1_PDT001911414.1_genomic.fna	Salmonella_enterica	0.5222	375.54 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFVZ010000001.1 Salmonella enterica strain PNUSAS387891 SAMN37643158-rid19572413.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFVZ010000027.1 Salmonella enterica strain PNUSAS387891 SAMN37643158-rid19572413.guided.18, whole genome shotgun sequence	40238..40675	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFVZ010000003.1	66915..67784	99.655	870	0						
GCA_032285465.1_PDT001911476.1_genomic.fna	Salmonella_enterica	0.5214	195.256 KB	7	aroC_764,dnaN_684,hemD_133,hisD_125,purE_2,sucA_119,thrA_503	4353	4:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col8282,IncI1-I(Alpha)	aroC	100	100	aroC_764	dnaN	100	100	dnaN_684	hemD	100	100	hemD_133	hisD	100	100	hisD_125	purE	100	100	purE_2	sucA	100	100	sucA_119	thrA	100	100	thrA_503	4	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Stanleyville		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNFWH010000004.1 Salmonella enterica strain PNUSAS387930 SAMN37643293-rid19571173.denovo.04, whole genome shotgun sequence	42615..43052	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNFWH010000049.1 Salmonella enterica strain PNUSAS387930 SAMN37643293-rid19571173.guided.33, whole genome shotgun sequence	20989..21426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col8282	100	207 / 207	ABNFWH010000040.1 Salmonella enterica strain PNUSAS387930 SAMN37643293-rid19571173.denovo.43, whole genome shotgun sequence	414..620	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNFWH010000018.1 Salmonella enterica strain PNUSAS387930 SAMN37643293-rid19571173.denovo.18, whole genome shotgun sequence	73047..73188																																																avrA	ABNFWH010000005.1	95623..96492	99.08	870	0						
GCA_032285485.1_PDT001911438.1_genomic.fna	Salmonella_enterica	0.5153	301.116 KB	5	aroC_88,dnaN_26,hemD_30,hisD_87,purE_21,sucA_87,thrA_80	243	61:l,v:1,5,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_87	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_80	61	l,v	1,5,7	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:l,v:1,5,7		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFWJ010000002.1 Salmonella enterica strain PNUSAS387852 SAMN37643231-rid19573193.denovo.02, whole genome shotgun sequence	125390..125827	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFWJ010000037.1 Salmonella enterica strain PNUSAS387852 SAMN37643231-rid19573193.guided.26, whole genome shotgun sequence	10646..11083	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFWJ010000001.1	144600..145469	96.437	870	0						
GCA_032285495.1_PDT001911456.1_genomic.fna	Salmonella_enterica	0.5214	819.806 KB	2	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFWI010000001.1 Salmonella enterica strain PNUSAS387932 SAMN37643282-rid19571133.denovo.01, whole genome shotgun sequence	1366640..1367077	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFWI010000016.1 Salmonella enterica strain PNUSAS387932 SAMN37643282-rid19571133.guided.09, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFWI010000002.1	669129..669998	99.425	870	0						
GCA_032285525.1_PDT001911430.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFWK010000001.1 Salmonella enterica strain PNUSAS387895 SAMN37643196-rid19572523.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFWK010000022.1 Salmonella enterica strain PNUSAS387895 SAMN37643196-rid19572523.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFWK010000012.1 Salmonella enterica strain PNUSAS387895 SAMN37643196-rid19572523.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNFWK010000015.1 Salmonella enterica strain PNUSAS387895 SAMN37643196-rid19572523.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABNFWK010000002.1	553635..554504	99.54	870	0						
GCA_032285545.1_PDT001911416.1_genomic.fna	Salmonella_enterica	0.5214	223.434 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFWM010000001.1 Salmonella enterica strain 23WA09CL01-S1 SAMN37643168-rid19571053.denovo.01, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFWM010000048.1 Salmonella enterica strain 23WA09CL01-S1 SAMN37643168-rid19571053.guided.18, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNFWM010000020.1 Salmonella enterica strain 23WA09CL01-S1 SAMN37643168-rid19571053.denovo.21, whole genome shotgun sequence	47843..48485	enterobacteriales	IncFII(S)	100	262 / 262	ABNFWM010000020.1 Salmonella enterica strain 23WA09CL01-S1 SAMN37643168-rid19571053.denovo.21, whole genome shotgun sequence	63570..63831																																																avrA	ABNFWM010000002.1	174651..175519	100	869	0						
GCA_032285565.1_PDT001911423.1_genomic.fna	Salmonella_enterica	0.5206	333.002 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX4	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFWL010000001.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.denovo.01, whole genome shotgun sequence	570912..571349	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFWL010000024.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.denovo.26, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFWL010000024.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.denovo.26, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFWL010000040.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.denovo.47, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFWL010000040.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.denovo.47, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNFWL010000051.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.guided.11, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNFWL010000055.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.guided.38, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNFWL010000055.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.guided.38, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNFWL010000057.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.guided.46, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFWL010000057.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.guided.46, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNFWL010000042.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.denovo.50, whole genome shotgun sequence	901..1776	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNFWL010000058.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.guided.48, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNFWL010000036.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.denovo.41, whole genome shotgun sequence	3320..4533	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFWL010000056.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.guided.42, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNFWL010000024.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.denovo.26, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFWL010000055.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.guided.38, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNFWL010000024.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.denovo.26, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFWL010000053.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.guided.31, whole genome shotgun sequence	4040..5239	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNFWL010000032.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.denovo.35, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX4	100	374 / 374	ABNFWL010000026.1 Salmonella enterica strain 23WA09CB03-S1 SAMN37643170-rid19572473.denovo.28, whole genome shotgun sequence	7851..8224																																																avrA	ABNFWL010000003.1	94091..94960	99.655	870	0						
GCA_032285585.1_PDT001911413.1_genomic.fna	Salmonella_enterica	0.5214	279.776 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFWN010000001.1 Salmonella enterica strain PNUSAS387892 SAMN37643157-rid19572403.denovo.01, whole genome shotgun sequence	590239..590676	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFWN010000033.1 Salmonella enterica strain PNUSAS387892 SAMN37643157-rid19572403.denovo.37, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFWN010000033.1 Salmonella enterica strain PNUSAS387892 SAMN37643157-rid19572403.denovo.37, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNFWN010000044.1 Salmonella enterica strain PNUSAS387892 SAMN37643157-rid19572403.guided.16, whole genome shotgun sequence	40074..40511	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFWN010000047.1 Salmonella enterica strain PNUSAS387892 SAMN37643157-rid19572403.guided.36, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFWN010000047.1 Salmonella enterica strain PNUSAS387892 SAMN37643157-rid19572403.guided.36, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNFWN010000036.1 Salmonella enterica strain PNUSAS387892 SAMN37643157-rid19572403.denovo.41, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNFWN010000048.1 Salmonella enterica strain PNUSAS387892 SAMN37643157-rid19572403.guided.40, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNFWN010000033.1 Salmonella enterica strain PNUSAS387892 SAMN37643157-rid19572403.denovo.37, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNFWN010000047.1 Salmonella enterica strain PNUSAS387892 SAMN37643157-rid19572403.guided.36, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942																																																																																																																																																																																																																																																																																																																																																																																																																																																																																	avrA	ABNFWN010000002.1	540686..541555	99.885	870	0						
GCA_032285645.1_PDT001911374.1_genomic.fna	Salmonella_enterica	0.5223	387.882 KB	4	aroC_484,dnaN_15,hemD_78,hisD_576,purE_391,sucA_2,thrA_503	2030	7:y:e,n,z15	6	aac(6')-Iaa,aph(2'')-Ib,aac(6')-Im,aac(6')-Iaa,aph(2'')-Ib,aac(6')-Im,blaTEM-1B,blaSHV-2,blaTEM-1B,blaSHV-2,tet(D),tet(D)	0		1	IncC	aroC	100	100	aroC_484	dnaN	100	100	dnaN_15	hemD	100	100	hemD_78	hisD	100	100	hisD_576	purE	100	100	purE_391	sucA	100	100	sucA_2	thrA	100	100	thrA_503	7	y	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mikawasima		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAPXZG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571902-rid19570923.denovo.01, whole genome shotgun sequence	774941..775378	Amikacin, Tobramycin	NC_003197	aph(2'')-Ib	99.89	900/900	DAPXZG010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571902-rid19570923.denovo.12, whole genome shotgun sequence	71992..72891	Amikacin, Gentamicin, Tobramycin, Kanamycin	AF337947	aac(6')-Im	100	537/537	DAPXZG010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571902-rid19570923.denovo.12, whole genome shotgun sequence	72935..73471	Amikacin, Tobramycin, Kanamycin, Amikacin, Tobramycin, Netilmicin	AF337947	aac(6')-Iaa	97.49	438/438	DAPXZG010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571902-rid19570923.guided.16, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197	aph(2'')-Ib	99.89	900/900	DAPXZG010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571902-rid19570923.guided.17, whole genome shotgun sequence	3732..4631	Amikacin, Gentamicin, Tobramycin, Kanamycin	AF337947	aac(6')-Im	100	537/537	DAPXZG010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571902-rid19570923.guided.17, whole genome shotgun sequence	4675..5211	Amikacin, Tobramycin, Kanamycin, Amikacin, Tobramycin, Netilmicin	AF337947	blaTEM-1B	100	861/861	DAPXZG010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571902-rid19570923.denovo.12, whole genome shotgun sequence	411..1271	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaSHV-2	100	861/861	DAPXZG010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571902-rid19570923.denovo.28, whole genome shotgun sequence	2642..3502	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AF148851	blaTEM-1B	100	861/861	DAPXZG010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571902-rid19570923.guided.26, whole genome shotgun sequence	452..1312	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaSHV-2	100	861/861	DAPXZG010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571902-rid19570923.guided.27, whole genome shotgun sequence	2681..3541	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AF148851	tet(D)	100	1185/1185	DAPXZG010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571902-rid19570923.denovo.33, whole genome shotgun sequence	1641..2825	Doxycycline, Tetracycline	AF467077	tet(D)	100	1185/1185	DAPXZG010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571902-rid19570923.guided.32, whole genome shotgun sequence	739..1923	Doxycycline, Tetracycline	AF467077																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncC	100	417 / 417	DAPXZG010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571902-rid19570923.denovo.12, whole genome shotgun sequence	116645..117061																																																						avrA	DAPXZG010000003.1	185296..186165	99.77	870	0						
GCA_032285905.1_PDT001911424.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFWQ010000001.1 Salmonella enterica strain PNUSAS387902 SAMN37643167-rid19572483.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFWQ010000021.1 Salmonella enterica strain PNUSAS387902 SAMN37643167-rid19572483.guided.13, whole genome shotgun sequence	765..1202	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFWQ010000011.1 Salmonella enterica strain PNUSAS387902 SAMN37643167-rid19572483.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNFWQ010000014.1 Salmonella enterica strain PNUSAS387902 SAMN37643167-rid19572483.denovo.17, whole genome shotgun sequence	3404..3665																																																avrA	ABNFWQ010000002.1	553636..554505	99.54	870	0						
GCA_032286065.1_PDT001911545.1_genomic.fna	Salmonella_enterica	0.5213	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFWT010000001.1 Salmonella enterica strain PNUSAS387934 SAMN37643289-rid19573313.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFWT010000022.1 Salmonella enterica strain PNUSAS387934 SAMN37643289-rid19573313.guided.17, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFWT010000014.1 Salmonella enterica strain PNUSAS387934 SAMN37643289-rid19573313.denovo.14, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNFWT010000014.1 Salmonella enterica strain PNUSAS387934 SAMN37643289-rid19573313.denovo.14, whole genome shotgun sequence	53092..53353																																																avrA	ABNFWT010000002.1	553637..554506	99.54	870	0						
GCA_032286105.1_PDT001911450.1_genomic.fna	Salmonella_enterica	0.5207	436.419 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFWV010000002.1 Salmonella enterica strain PNUSAS387834 SAMN37643241-rid19572653.denovo.02, whole genome shotgun sequence	384975..385412	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFWV010000039.1 Salmonella enterica strain PNUSAS387834 SAMN37643241-rid19572653.guided.16, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFWV010000009.1	150796..151666	99.196	871	0						
GCA_032286125.1_PDT001911448.1_genomic.fna	Salmonella_enterica	0.5211	273.329 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFWW010000001.1 Salmonella enterica strain PNUSAS387836 SAMN37643240-rid19573213.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFWW010000052.1 Salmonella enterica strain PNUSAS387836 SAMN37643240-rid19573213.guided.30, whole genome shotgun sequence	20567..21004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFWW010000004.1	175017..175885	100	869	0						
GCA_032286145.1_PDT001911465.1_genomic.fna	Salmonella_enterica	0.5217	550.793 KB	2	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNFWU010000001.1 Salmonella enterica strain PNUSAS387938 SAMN37643286-rid19573263.denovo.01, whole genome shotgun sequence	1339413..1339850	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNFWU010000017.1 Salmonella enterica strain PNUSAS387938 SAMN37643286-rid19573263.guided.16, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFWU010000002.1	149711..150579	99.425	870	0						
GCA_032286165.1_PDT001911437.1_genomic.fna	Salmonella_enterica	0.5217	436.63 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFWX010000001.1 Salmonella enterica strain PNUSAS387837 SAMN37643219-rid19572573.denovo.01, whole genome shotgun sequence	383958..384395	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFWX010000032.1 Salmonella enterica strain PNUSAS387837 SAMN37643219-rid19572573.guided.20, whole genome shotgun sequence	9270..9707	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFWX010000002.1	514440..515308	99.195	870	0						
GCA_032286185.1_PDT001911434.1_genomic.fna	Salmonella_enterica	0.5216	699.691 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNFWY010000001.1 Salmonella enterica strain PNUSAS387832 SAMN37643218-rid19572553.denovo.01, whole genome shotgun sequence	486958..487395	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNFWY010000024.1 Salmonella enterica strain PNUSAS387832 SAMN37643218-rid19572553.guided.16, whole genome shotgun sequence	11038..11475	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFWY010000002.1	544410..545278	99.425	870	0						
GCA_032286205.1_PDT001911420.1_genomic.fna	Salmonella_enterica	0.52	696.248 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFWZ010000001.1 Salmonella enterica strain PNUSAS387894 SAMN37643160-rid19572453.denovo.01, whole genome shotgun sequence	643436..643873	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFWZ010000021.1 Salmonella enterica strain PNUSAS387894 SAMN37643160-rid19572453.guided.09, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032286225.1_PDT001911425.1_genomic.fna	Salmonella_enterica	0.5208	693.336 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNFXA010000001.1 Salmonella enterica strain PNUSAS387897 SAMN37643166-rid19572493.denovo.01, whole genome shotgun sequence	684257..684694	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNFXA010000028.1 Salmonella enterica strain PNUSAS387897 SAMN37643166-rid19572493.guided.09, whole genome shotgun sequence	12320..12757	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNFXA010000009.1 Salmonella enterica strain PNUSAS387897 SAMN37643166-rid19572493.denovo.10, whole genome shotgun sequence	97983..98124																																																						avrA	ABNFXA010000003.1	563792..564661	99.77	870	0						
GCA_032286245.1_PDT001911419.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFXB010000001.1 Salmonella enterica strain PNUSAS387893 SAMN37643163-rid19572443.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFXB010000022.1 Salmonella enterica strain PNUSAS387893 SAMN37643163-rid19572443.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFXB010000012.1 Salmonella enterica strain PNUSAS387893 SAMN37643163-rid19572443.denovo.14, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNFXB010000015.1 Salmonella enterica strain PNUSAS387893 SAMN37643163-rid19572443.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABNFXB010000002.1	553499..554368	99.54	870	0						
GCA_032286265.1_PDT001911417.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFXC010000001.1 Salmonella enterica strain 23WA09CH01-S1 SAMN37643169-rid19572433.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFXC010000022.1 Salmonella enterica strain 23WA09CH01-S1 SAMN37643169-rid19572433.guided.13, whole genome shotgun sequence	12828..13265	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFXC010000012.1 Salmonella enterica strain 23WA09CH01-S1 SAMN37643169-rid19572433.denovo.14, whole genome shotgun sequence	40563..41205	enterobacteriales	IncFII(S)	100	262 / 262	ABNFXC010000015.1 Salmonella enterica strain 23WA09CH01-S1 SAMN37643169-rid19572433.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABNFXC010000002.1	553635..554504	99.54	870	0						
GCA_032286285.1_PDT001911412.1_genomic.fna	Salmonella_enterica	0.522	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFXD010000001.1 Salmonella enterica strain PNUSAS387898 SAMN37643159-rid19572393.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFXD010000023.1 Salmonella enterica strain PNUSAS387898 SAMN37643159-rid19572393.guided.13, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFXD010000002.1	183148..184017	98.966	870	0						
GCA_032286725.1_PDT001911746.1_genomic.fna	Salmonella_enterica	0.5213	428.99 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFXE010000001.1 Salmonella enterica strain PNUSAS387974 SAMN37645021-rid19575263.denovo.01, whole genome shotgun sequence	558296..558733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFXE010000031.1 Salmonella enterica strain PNUSAS387974 SAMN37645021-rid19575263.guided.22, whole genome shotgun sequence	3676..4113	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.4	374 / 374	ABNFXE010000018.1 Salmonella enterica strain PNUSAS387974 SAMN37645021-rid19575263.denovo.18, whole genome shotgun sequence	33485..33858																																																						avrA	ABNFXE010000010.1	181461..182329	99.195	870	0						
GCA_032287585.1_PDT001911475.1_genomic.fna	Salmonella_enterica	0.5198	384.059 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFXF010000001.1 Salmonella enterica strain PNUSAS387931 SAMN37643291-rid19573303.denovo.01, whole genome shotgun sequence	515775..516212	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFXF010000037.1 Salmonella enterica strain PNUSAS387931 SAMN37643291-rid19573303.guided.20, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFXF010000002.1	505245..506115	99.196	871	0						
GCA_032287645.1_PDT001911415.1_genomic.fna	Salmonella_enterica	0.521	312.996 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFXG010000001.1 Salmonella enterica strain PNUSAS387903 SAMN37643156-rid19572423.denovo.01, whole genome shotgun sequence	207361..207798	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNFXG010000033.1 Salmonella enterica strain PNUSAS387903 SAMN37643156-rid19572423.denovo.37, whole genome shotgun sequence	555..1370	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aac(6')-Iaa	100	438/438	ABNFXG010000048.1 Salmonella enterica strain PNUSAS387903 SAMN37643156-rid19572423.guided.29, whole genome shotgun sequence	7859..8296	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNFXG010000050.1 Salmonella enterica strain PNUSAS387903 SAMN37643156-rid19572423.guided.36, whole genome shotgun sequence	3654..4469	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	100	643 / 643	ABNFXG010000017.1 Salmonella enterica strain PNUSAS387903 SAMN37643156-rid19572423.denovo.17, whole genome shotgun sequence	48415..49057	enterobacteriales	IncFII(S)	100	262 / 262	ABNFXG010000017.1 Salmonella enterica strain PNUSAS387903 SAMN37643156-rid19572423.denovo.17, whole genome shotgun sequence	64121..64382																																																avrA	ABNFXG010000002.1	145730..146599	99.885	870	0						
GCA_032287665.1_PDT001911375.1_genomic.fna	Salmonella_enterica	0.5219	331.087 KB	5	aroC_484,dnaN_15,hemD_78,hisD_576,purE_391,sucA_2,thrA_503	2030	7:y:e,n,z15	5	aac(6')-Iaa,aph(2'')-Ib,aac(6')-Im,aph(2'')-Ib,aac(6')-Im,aac(6')-Iaa,blaTEM-1B,blaSHV-2,blaTEM-1B,blaSHV-2	0		1	IncC,IncC	aroC	100	100	aroC_484	dnaN	100	100	dnaN_15	hemD	100	100	hemD_78	hisD	100	100	hisD_576	purE	100	100	purE_391	sucA	100	100	sucA_2	thrA	100	100	thrA_503	7	y	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mikawasima		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAPYCJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate infant SAMN37571901-rid19572193.denovo.01, whole genome shotgun sequence	710633..711070	Amikacin, Tobramycin	NC_003197	aph(2'')-Ib	99.89	900/900	DAPYCJ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate infant SAMN37571901-rid19572193.denovo.13, whole genome shotgun sequence	71992..72891	Amikacin, Gentamicin, Tobramycin, Kanamycin	AF337947	aac(6')-Im	100	537/537	DAPYCJ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate infant SAMN37571901-rid19572193.denovo.13, whole genome shotgun sequence	72935..73471	Amikacin, Tobramycin, Kanamycin, Amikacin, Tobramycin, Netilmicin	AF337947	aph(2'')-Ib	99.89	900/900	DAPYCJ010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate infant SAMN37571901-rid19572193.guided.15, whole genome shotgun sequence	36940..37839	Amikacin, Gentamicin, Tobramycin, Kanamycin	AF337947	aac(6')-Im	100	537/537	DAPYCJ010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate infant SAMN37571901-rid19572193.guided.15, whole genome shotgun sequence	37883..38419	Amikacin, Tobramycin, Kanamycin, Amikacin, Tobramycin, Netilmicin	AF337947	aac(6')-Iaa	97.49	438/438	DAPYCJ010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate infant SAMN37571901-rid19572193.guided.20, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAPYCJ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate infant SAMN37571901-rid19572193.denovo.13, whole genome shotgun sequence	411..1271	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaSHV-2	100	861/861	DAPYCJ010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate infant SAMN37571901-rid19572193.denovo.31, whole genome shotgun sequence	2642..3502	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AF148851	blaTEM-1B	100	861/861	DAPYCJ010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate infant SAMN37571901-rid19572193.guided.29, whole genome shotgun sequence	452..1312	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaSHV-2	100	861/861	DAPYCJ010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate infant SAMN37571901-rid19572193.guided.30, whole genome shotgun sequence	2682..3542	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AF148851																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	IncC	100	417 / 417	DAPYCJ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate infant SAMN37571901-rid19572193.denovo.13, whole genome shotgun sequence	116645..117061	enterobacteriales	IncC	100	417 / 417	DAPYCJ010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate infant SAMN37571901-rid19572193.guided.15, whole genome shotgun sequence	81593..82009																																																avrA	DAPYCJ010000003.1	131482..132351	99.77	870	0						
GCA_032287785.1_PDT001911748.1_genomic.fna	Salmonella_enterica	0.5195	557.049 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNFXJ010000001.1 Salmonella enterica strain PNUSAS387962 SAMN37645026-rid19575283.denovo.01, whole genome shotgun sequence	255275..255712	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNFXJ010000027.1 Salmonella enterica strain PNUSAS387962 SAMN37645026-rid19575283.guided.14, whole genome shotgun sequence	16896..17333	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFXJ010000002.1	556208..557076	99.425	870	0						
GCA_032287825.1_PDT001911751.1_genomic.fna	Salmonella_enterica	0.5212	344.999 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFXH010000003.1 Salmonella enterica strain PNUSAS387969 SAMN37645024-rid19575383.denovo.03, whole genome shotgun sequence	162094..162531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFXH010000034.1 Salmonella enterica strain PNUSAS387969 SAMN37645024-rid19575383.guided.25, whole genome shotgun sequence	3551..3988	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFXH010000019.1 Salmonella enterica strain PNUSAS387969 SAMN37645024-rid19575383.denovo.19, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNFXH010000019.1 Salmonella enterica strain PNUSAS387969 SAMN37645024-rid19575383.denovo.19, whole genome shotgun sequence	5032..5293																																																avrA	ABNFXH010000001.1	506526..507395	99.54	870	0						
GCA_032287845.1_PDT001911747.1_genomic.fna	Salmonella_enterica	0.5215	238.979 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncQ1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFXL010000001.1 Salmonella enterica strain PNUSAS387975 SAMN37645027-rid19575273.denovo.01, whole genome shotgun sequence	145288..145725	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFXL010000041.1 Salmonella enterica strain PNUSAS387975 SAMN37645027-rid19575273.denovo.46, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFXL010000041.1 Salmonella enterica strain PNUSAS387975 SAMN37645027-rid19575273.denovo.46, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNFXL010000050.1 Salmonella enterica strain PNUSAS387975 SAMN37645027-rid19575273.guided.30, whole genome shotgun sequence	19599..20036	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFXL010000053.1 Salmonella enterica strain PNUSAS387975 SAMN37645027-rid19575273.guided.45, whole genome shotgun sequence	1758..2594	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFXL010000053.1 Salmonella enterica strain PNUSAS387975 SAMN37645027-rid19575273.guided.45, whole genome shotgun sequence	955..1758	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNFXL010000042.1 Salmonella enterica strain PNUSAS387975 SAMN37645027-rid19575273.denovo.48, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNFXL010000054.1 Salmonella enterica strain PNUSAS387975 SAMN37645027-rid19575273.guided.47, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNFXL010000041.1 Salmonella enterica strain PNUSAS387975 SAMN37645027-rid19575273.denovo.46, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNFXL010000053.1 Salmonella enterica strain PNUSAS387975 SAMN37645027-rid19575273.guided.45, whole genome shotgun sequence	79..894	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNFXL010000032.1 Salmonella enterica strain PNUSAS387975 SAMN37645027-rid19575273.denovo.36, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNFXL010000052.1 Salmonella enterica strain PNUSAS387975 SAMN37645027-rid19575273.guided.35, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncQ1	100	796 / 796	ABNFXL010000035.1 Salmonella enterica strain PNUSAS387975 SAMN37645027-rid19575273.denovo.39, whole genome shotgun sequence	292..1087																																																						avrA	ABNFXL010000002.1	402770..403639	99.885	870	0						
GCA_032288085.1_PDT001911421.1_genomic.fna	Salmonella_enterica	0.521	489.917 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFXP010000001.1 Salmonella enterica strain PNUSAS387901 SAMN37643165-rid19571063.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFXP010000019.1 Salmonella enterica strain PNUSAS387901 SAMN37643165-rid19571063.guided.10, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFXP010000011.1 Salmonella enterica strain PNUSAS387901 SAMN37643165-rid19571063.denovo.12, whole genome shotgun sequence	48659..49301	enterobacteriales	IncFII(S)	100	262 / 262	ABNFXP010000011.1 Salmonella enterica strain PNUSAS387901 SAMN37643165-rid19571063.denovo.12, whole genome shotgun sequence	4406..4667																																																avrA	ABNFXP010000002.1	584136..585005	99.54	870	0						
GCA_032288985.1_PDT001911473.1_genomic.fna	Salmonella_enterica	0.5204	477.331 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	ColRNAI,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFXT010000001.1 Salmonella enterica strain PNUSAS387940 SAMN37643294-rid19573293.denovo.01, whole genome shotgun sequence	736657..737094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFXT010000028.1 Salmonella enterica strain PNUSAS387940 SAMN37643294-rid19573293.guided.18, whole genome shotgun sequence	40134..40571	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABNFXT010000022.1 Salmonella enterica strain PNUSAS387940 SAMN37643294-rid19573293.denovo.25, whole genome shotgun sequence	3981..4111	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFXT010000017.1 Salmonella enterica strain PNUSAS387940 SAMN37643294-rid19573293.denovo.17, whole genome shotgun sequence	36760..37402		enterobacteriales	IncFII(S)	100	262 / 262	ABNFXT010000017.1 Salmonella enterica strain PNUSAS387940 SAMN37643294-rid19573293.denovo.17, whole genome shotgun sequence	51843..52104		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNFXT010000015.1 Salmonella enterica strain PNUSAS387940 SAMN37643294-rid19573293.denovo.15, whole genome shotgun sequence	79861..80002																																		avrA	ABNFXT010000007.1	141065..141934	99.54	870	0						
GCA_032289005.1_PDT001911464.1_genomic.fna	Salmonella_enterica	0.5221	312.248 KB	5	aroC_654,dnaN_41,hemD_109,hisD_279,purE_2,sucA_100,thrA_126	3301	13:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_654	dnaN	100	100	dnaN_41	hemD	100	100	hemD_109	hisD	100	100	hisD_279	purE	100	100	purE_2	sucA	100	100	sucA_100	thrA	100	100	thrA_126	13	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Telelkebir		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNFXU010000003.1 Salmonella enterica strain PNUSAS387939 SAMN37643292-rid19572723.denovo.03, whole genome shotgun sequence	81071..81508	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNFXU010000043.1 Salmonella enterica strain PNUSAS387939 SAMN37643292-rid19572723.guided.27, whole genome shotgun sequence	5170..5607	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFXU010000008.1	140428..141297	99.08	870	0						
GCA_032289025.1_PDT001911373.1_genomic.fna	Salmonella_enterica	0.5215	331.087 KB	6	aroC_484,dnaN_15,hemD_78,hisD_576,purE_391,sucA_2,thrA_503	2030	7:y:e,n,z15	4	aac(6')-Iaa,aph(2'')-Ib,aac(6')-Im,aph(2'')-Ib,aac(6')-Im,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	0		1	IncC,IncC	aroC	100	100	aroC_484	dnaN	100	100	dnaN_15	hemD	100	100	hemD_78	hisD	100	100	hisD_576	purE	100	100	purE_391	sucA	100	100	sucA_2	thrA	100	100	thrA_503	7	y	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mikawasima		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAPYEI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571903-rid19573113.denovo.01, whole genome shotgun sequence	175420..175857	Amikacin, Tobramycin	NC_003197	aph(2'')-Ib	99.89	900/900	DAPYEI010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571903-rid19573113.denovo.14, whole genome shotgun sequence	71993..72892	Amikacin, Gentamicin, Tobramycin, Kanamycin	AF337947	aac(6')-Im	100	537/537	DAPYEI010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571903-rid19573113.denovo.14, whole genome shotgun sequence	72936..73472	Amikacin, Tobramycin, Netilmicin, Amikacin, Tobramycin, Kanamycin	AF337947	aph(2'')-Ib	99.89	900/900	DAPYEI010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571903-rid19573113.guided.17, whole genome shotgun sequence	28572..29471	Amikacin, Gentamicin, Tobramycin, Kanamycin	AF337947	aac(6')-Im	100	537/537	DAPYEI010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571903-rid19573113.guided.17, whole genome shotgun sequence	29515..30051	Amikacin, Tobramycin, Netilmicin, Amikacin, Tobramycin, Kanamycin	AF337947	aac(6')-Iaa	97.49	438/438	DAPYEI010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571903-rid19573113.guided.23, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAPYEI010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571903-rid19573113.denovo.14, whole genome shotgun sequence	412..1272	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAPYEI010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571903-rid19573113.guided.29, whole genome shotgun sequence	453..1313	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	IncC	100	417 / 417	DAPYEI010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571903-rid19573113.denovo.14, whole genome shotgun sequence	116646..117062	enterobacteriales	IncC	100	417 / 417	DAPYEI010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate nurse SAMN37571903-rid19573113.guided.17, whole genome shotgun sequence	73225..73641																																																avrA	DAPYEI010000004.1	131482..132351	99.77	870	0						
GCA_032289365.1_PDT001911848.1_genomic.fna	Salmonella_enterica	0.5211	604.724 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNFXV010000001.1 Salmonella enterica strain PNUSAS387039 SAMN37648215-rid19575653.denovo.01, whole genome shotgun sequence	596450..596887	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNFXV010000023.1 Salmonella enterica strain PNUSAS387039 SAMN37648215-rid19575653.guided.17, whole genome shotgun sequence	15784..16221	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFXV010000003.1	509497..510365	99.425	870	0						
GCA_032289385.1_PDT001911833.1_genomic.fna	Salmonella_enterica	0.5212	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNFXY010000001.1 Salmonella enterica strain PNUSAS387028 SAMN37648170-rid19575623.denovo.01, whole genome shotgun sequence	717882..718319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNFXY010000018.1 Salmonella enterica strain PNUSAS387028 SAMN37648170-rid19575623.guided.11, whole genome shotgun sequence	34566..35003	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFXY010000004.1	160405..161274	99.54	870	0						
GCA_032289405.1_PDT001911838.1_genomic.fna	Salmonella_enterica	0.5208	673.233 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFXW010000001.1 Salmonella enterica strain PNUSAS387030 SAMN37648179-rid19575633.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFXW010000021.1 Salmonella enterica strain PNUSAS387030 SAMN37648179-rid19575633.guided.14, whole genome shotgun sequence	4815..5252	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032289425.1_PDT001911819.1_genomic.fna	Salmonella_enterica	0.522	292.577 KB	6	aroC_83,dnaN_46,hemD_25,hisD_148,purE_33,sucA_23,thrA_63	450	13:d:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_83	dnaN	100	100	dnaN_46	hemD	100	100	hemD_25	hisD	100	100	hisD_148	purE	100	100	purE_33	sucA	100	100	sucA_23	thrA	100	100	thrA_63	13	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Telelkebir		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNFXZ010000006.1 Salmonella enterica strain PNUSAS387968 SAMN37645827-rid19576133.denovo.06, whole genome shotgun sequence	37937..38374	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNFXZ010000046.1 Salmonella enterica strain PNUSAS387968 SAMN37645827-rid19576133.guided.26, whole genome shotgun sequence	3345..3782	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNFXZ010000001.1 Salmonella enterica strain PNUSAS387968 SAMN37645827-rid19576133.denovo.01, whole genome shotgun sequence	390280..390702	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNFXZ010000047.1 Salmonella enterica strain PNUSAS387968 SAMN37645827-rid19576133.guided.30, whole genome shotgun sequence	15619..16041	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032289445.1_PDT001911843.1_genomic.fna	Salmonella_enterica	0.521	721.081 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNFXX010000001.1 Salmonella enterica strain PNUSAS387017 SAMN37648224-rid19575643.denovo.01, whole genome shotgun sequence	717104..717541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNFXX010000019.1 Salmonella enterica strain PNUSAS387017 SAMN37648224-rid19575643.guided.15, whole genome shotgun sequence	27..464	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFXX010000004.1	160631..161500	99.54	870	0						
GCA_032289465.1_PDT001911813.1_genomic.fna	Salmonella_enterica	0.5208	430.084 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFYB010000001.1 Salmonella enterica strain PNUSAS387967 SAMN37645025-rid19575583.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFYB010000031.1 Salmonella enterica strain PNUSAS387967 SAMN37645025-rid19575583.guided.17, whole genome shotgun sequence	9645..10082	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFYB010000009.1	150749..151619	99.196	871	0						
GCA_032289485.1_PDT001911816.1_genomic.fna	Salmonella_enterica	0.5208	419.258 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFYA010000002.1 Salmonella enterica strain PNUSAS387979 SAMN37645022-rid19576113.denovo.02, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFYA010000034.1 Salmonella enterica strain PNUSAS387979 SAMN37645022-rid19576113.guided.25, whole genome shotgun sequence	2443..2880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFYA010000015.1	39348..40218	99.196	871	0						
GCA_032289505.1_PDT001911775.1_genomic.fna	Salmonella_enterica	0.5215	207.392 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFYC010000001.1 Salmonella enterica strain PNUSAS387961 SAMN37645825-rid19575823.denovo.01, whole genome shotgun sequence	145423..145860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFYC010000054.1 Salmonella enterica strain PNUSAS387961 SAMN37645825-rid19575823.guided.27, whole genome shotgun sequence	807..1244	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFYC010000003.1	174351..175219	99.77	870	0						
GCA_032289525.1_PDT001911773.1_genomic.fna	Salmonella_enterica	0.5201	223.58 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	10	aac(6')-Iaa,aph(4)-Ia,aph(3')-Ia,aac(3)-IV,aph(6)-Id,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul2,bleO,bleO	0		4	Col(pHAD28),Col(pHAD28),Col440I,IncX1,p0111	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFYD010000001.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.denovo.01, whole genome shotgun sequence	569677..570114	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNFYD010000044.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.denovo.45, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aph(3')-Ia	99.88	816/816	ABNFYD010000044.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.denovo.45, whole genome shotgun sequence	5938..6753	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EF015636	aac(3)-IV	100	777/777	ABNFYD010000044.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.denovo.45, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aph(6)-Id	100	824/837	ABNFYD010000060.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.denovo.71, whole genome shotgun sequence	1..824	Streptomycin	M28829	aac(6')-Iaa	100	438/438	ABNFYD010000072.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.guided.46, whole genome shotgun sequence	5698..6135	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNFYD010000073.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.guided.50, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNFYD010000073.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.guided.50, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	99.88	816/816	ABNFYD010000077.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.guided.60, whole genome shotgun sequence	334..1149	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EF015636	aph(6)-Id	100	837/837	ABNFYD010000078.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.guided.65, whole genome shotgun sequence	836..1672	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFYD010000078.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.guided.65, whole genome shotgun sequence	33..836	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNFYD010000079.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.guided.66, whole genome shotgun sequence	836..1672	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNFYD010000079.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.guided.66, whole genome shotgun sequence	34..836	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNFYD010000079.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.guided.66, whole genome shotgun sequence	33..836	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNFYD010000079.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.guided.66, whole genome shotgun sequence	33..836	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNFYD010000079.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.guided.66, whole genome shotgun sequence	33..836	Streptomycin	AF321550	blaTEM-1B	100	861/861	ABNFYD010000046.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.denovo.48, whole genome shotgun sequence	4352..5212	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNFYD010000080.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.guided.67, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNFYD010000049.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.denovo.53, whole genome shotgun sequence	3332..3976	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNFYD010000074.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.guided.52, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABNFYD010000052.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.denovo.57, whole genome shotgun sequence	264..1079	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNFYD010000076.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.guided.59, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	bleO	100	392/399	ABNFYD010000058.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.denovo.68, whole genome shotgun sequence	136..527	Bleomycin	AF051917	bleO	100	392/399	ABNFYD010000081.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.guided.69, whole genome shotgun sequence	40..431	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	100	131 / 131	ABNFYD010000049.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.denovo.53, whole genome shotgun sequence	2676..2806	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNFYD010000074.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.guided.52, whole genome shotgun sequence	3570..3700		enterobacteriales	Col440I	93.64	110 / 114	ABNFYD010000051.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.denovo.56, whole genome shotgun sequence	1566..1675		enterobacteriales	IncX1	99.47	377 / 377	ABNFYD010000033.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.denovo.33, whole genome shotgun sequence	7188..7564		enterobacteriales	p0111	98.64	885 / 885	ABNFYD010000018.1 Salmonella enterica strain PNUSAS387971 SAMN37645829-rid19575463.denovo.18, whole genome shotgun sequence	44260..45144																											avrA	ABNFYD010000015.1	39486..40355	99.885	870	0						
GCA_032289545.1_PDT001911766.1_genomic.fna	Salmonella_enterica	0.5213	232.937 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFYE010000001.1 Salmonella enterica strain PNUSAS387966 SAMN37645822-rid19575443.denovo.01, whole genome shotgun sequence	608506..608943	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.91	382/438	ABNFYE010000038.1 Salmonella enterica strain PNUSAS387966 SAMN37645822-rid19575443.guided.26, whole genome shotgun sequence	1..382	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFYE010000002.1	39412..40281	99.655	870	0						
GCA_032289565.1_PDT001911768.1_genomic.fna	Salmonella_enterica	0.5241	68.525 KB	24	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFYF010000017.1 Salmonella enterica strain PNUSAS387959 SAMN37645851-rid19575453.denovo.017, whole genome shotgun sequence	62419..62856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFYF010000114.1 Salmonella enterica strain PNUSAS387959 SAMN37645851-rid19575453.guided.071, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFYF010000014.1	81701..82570	99.655	870	0						
GCA_032289585.1_PDT001911765.1_genomic.fna	Salmonella_enterica	0.5212	328.89 KB	6	aroC_347,dnaN_394,hemD_78,hisD_496,purE_426,sucA_9,thrA_102	1549	8:r:z6	4	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,tet(A),tet(A)	1	parC_p.T57S	2	IncI1-I(Alpha),IncI2	aroC	100	100	aroC_347	dnaN	100	100	dnaN_394	hemD	100	100	hemD_78	hisD	100	100	hisD_496	purE	100	100	purE_426	sucA	100	100	sucA_9	thrA	100	100	thrA_102	8	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Altona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFYG010000001.1 Salmonella enterica strain PNUSAS387970 SAMN37645828-rid19575753.denovo.01, whole genome shotgun sequence	532689..533126	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNFYG010000014.1 Salmonella enterica strain PNUSAS387970 SAMN37645828-rid19575753.denovo.14, whole genome shotgun sequence	82041..82943	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNFYG010000014.1 Salmonella enterica strain PNUSAS387970 SAMN37645828-rid19575753.denovo.14, whole genome shotgun sequence	81086..81877	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.95	438/438	ABNFYG010000046.1 Salmonella enterica strain PNUSAS387970 SAMN37645828-rid19575753.guided.33, whole genome shotgun sequence	16433..16870	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNFYG010000047.1 Salmonella enterica strain PNUSAS387970 SAMN37645828-rid19575753.guided.34, whole genome shotgun sequence	3982..4884	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNFYG010000047.1 Salmonella enterica strain PNUSAS387970 SAMN37645828-rid19575753.guided.34, whole genome shotgun sequence	3027..3818	Spectinomycin, Streptomycin	JQ414041	tet(A)	100	1200/1200	ABNFYG010000014.1 Salmonella enterica strain PNUSAS387970 SAMN37645828-rid19575753.denovo.14, whole genome shotgun sequence	89426..90625	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNFYG010000048.1 Salmonella enterica strain PNUSAS387970 SAMN37645828-rid19575753.guided.37, whole genome shotgun sequence	2040..3239	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNFYG010000014.1 Salmonella enterica strain PNUSAS387970 SAMN37645828-rid19575753.denovo.14, whole genome shotgun sequence	95988..96129	enterobacteriales	IncI2	100	324 / 324	ABNFYG010000022.1 Salmonella enterica strain PNUSAS387970 SAMN37645828-rid19575753.denovo.22, whole genome shotgun sequence	9180..9503																																																avrA	ABNFYG010000004.1	401084..401953	99.195	870	0						
GCA_032289605.1_PDT001911763.1_genomic.fna	Salmonella_enterica	0.5208	255.553 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFYH010000001.1 Salmonella enterica strain PNUSAS387947 SAMN37645833-rid19575433.denovo.01, whole genome shotgun sequence	561489..561926	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFYH010000029.1 Salmonella enterica strain PNUSAS387947 SAMN37645833-rid19575433.guided.23, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFYH010000011.1	140310..141178	99.195	870	0						
GCA_032289625.1_PDT001911761.1_genomic.fna	Salmonella_enterica	0.5225	279.625 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFYI010000001.1 Salmonella enterica strain PNUSAS387964 SAMN37645826-rid19575423.denovo.01, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFYI010000036.1 Salmonella enterica strain PNUSAS387964 SAMN37645826-rid19575423.guided.29, whole genome shotgun sequence	1622..2059	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFYI010000003.1	39472..40341	98.966	870	0						
GCA_032289645.1_PDT001911754.1_genomic.fna	Salmonella_enterica	0.5201	434.562 KB	5	aroC_8,dnaN_38,hemD_40,hisD_12,purE_5,sucA_9,thrA_38	76	8:g,m,s:-	3	aac(6')-Iaa,aac(6')-Iaa,qnrS1,qnrS1,dfrA14,dfrA14	0		1	pKPC-CAV1321	aroC	100	100	aroC_8	dnaN	100	100	dnaN_38	hemD	100	100	hemD_40	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_38	8	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Chincol or Emek	The predicted serotypes share the same general formula: 8:g,m,s:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNFYJ010000001.1 Salmonella enterica strain PNUSAS387972 SAMN37645820-rid19575683.denovo.01, whole genome shotgun sequence	781463..781900	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNFYJ010000032.1 Salmonella enterica strain PNUSAS387972 SAMN37645820-rid19575683.guided.22, whole genome shotgun sequence	18079..18516	Amikacin, Tobramycin	NC_003197	qnrS1	100	657/657	ABNFYJ010000007.1 Salmonella enterica strain PNUSAS387972 SAMN37645820-rid19575683.denovo.07, whole genome shotgun sequence	200258..200914	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNFYJ010000035.1 Salmonella enterica strain PNUSAS387972 SAMN37645820-rid19575683.guided.27, whole genome shotgun sequence	1070..1726	Ciprofloxacin	AB187515	dfrA14	100	474/474	ABNFYJ010000023.1 Salmonella enterica strain PNUSAS387972 SAMN37645820-rid19575683.denovo.26, whole genome shotgun sequence	6581..7054	Trimethoprim	KF921535	dfrA14	100	474/474	ABNFYJ010000036.1 Salmonella enterica strain PNUSAS387972 SAMN37645820-rid19575683.guided.30, whole genome shotgun sequence	1642..2115	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	pKPC-CAV1321	100	596 / 596	ABNFYJ010000007.1 Salmonella enterica strain PNUSAS387972 SAMN37645820-rid19575683.denovo.07, whole genome shotgun sequence	16030..16625																																																																	
GCA_032289665.1_PDT001911753.1_genomic.fna	Salmonella_enterica	0.5217	198.402 KB	8	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFYK010000001.1 Salmonella enterica strain PNUSAS387943 SAMN37645831-rid19575393.denovo.01, whole genome shotgun sequence	407341..407778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFYK010000061.1 Salmonella enterica strain PNUSAS387943 SAMN37645831-rid19575393.guided.42, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFYK010000006.1	150709..151577	99.195	870	0						
GCA_032289825.1_PDT001911836.1_genomic.fna	Salmonella_enterica	0.5213	396.51 KB	4	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNFYN010000002.1 Salmonella enterica strain PNUSAS387024 SAMN37648176-rid19576273.denovo.02, whole genome shotgun sequence	293782..294219	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNFYN010000029.1 Salmonella enterica strain PNUSAS387024 SAMN37648176-rid19576273.guided.16, whole genome shotgun sequence	14812..15249	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFYN010000003.1	411221..412090	99.77	870	0						
GCA_032289845.1_PDT001911840.1_genomic.fna	Salmonella_enterica	0.5203	161.392 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNFYL010000010.1 Salmonella enterica strain PNUSAS387040 SAMN37648181-rid19576303.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNFYL010000057.1 Salmonella enterica strain PNUSAS387040 SAMN37648181-rid19576303.guided.48, whole genome shotgun sequence	1252..1686	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032289865.1_PDT001911839.1_genomic.fna	Salmonella_enterica	0.5229	513.65 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNFYM010000001.1 Salmonella enterica strain PNUSAS387023 SAMN37648177-rid19576293.denovo.01, whole genome shotgun sequence	667532..667969	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNFYM010000028.1 Salmonella enterica strain PNUSAS387023 SAMN37648177-rid19576293.guided.18, whole genome shotgun sequence	14491..14928	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFYM010000003.1	508503..509372	99.31	870	0						
GCA_032289885.1_PDT001911831.1_genomic.fna	Salmonella_enterica	0.5209	457.333 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFYR010000001.1 Salmonella enterica strain PNUSAS387014 SAMN37648168-rid19576233.denovo.01, whole genome shotgun sequence	326741..327178	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFYR010000043.1 Salmonella enterica strain PNUSAS387014 SAMN37648168-rid19576233.guided.21, whole genome shotgun sequence	2849..3286	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	ABNFYR010000023.1 Salmonella enterica strain PNUSAS387014 SAMN37648168-rid19576233.denovo.25, whole genome shotgun sequence	3345..3457																																																						avrA	ABNFYR010000002.1	183135..184004	98.966	870	0						
GCA_032289895.1_PDT001911834.1_genomic.fna	Salmonella_enterica	0.5214	443.054 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFYP010000003.1 Salmonella enterica strain PNUSAS387033 SAMN37648173-rid19576253.denovo.03, whole genome shotgun sequence	202288..202725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNFYP010000053.1 Salmonella enterica strain PNUSAS387033 SAMN37648173-rid19576253.guided.31, whole genome shotgun sequence	6075..6512	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNFYP010000010.1 Salmonella enterica strain PNUSAS387033 SAMN37648173-rid19576253.denovo.10, whole genome shotgun sequence	37875..38517	enterobacteriales	IncFII(Yp)	96.52	230 / 230	ABNFYP010000010.1 Salmonella enterica strain PNUSAS387033 SAMN37648173-rid19576253.denovo.10, whole genome shotgun sequence	95525..95753																																																avrA	ABNFYP010000004.1	174137..175006	99.77	870	0						
GCA_032289925.1_PDT001911828.1_genomic.fna	Salmonella_enterica	0.5211	375.641 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFYQ010000001.1 Salmonella enterica strain PNUSAS387948 SAMN37645835-rid19575613.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFYQ010000030.1 Salmonella enterica strain PNUSAS387948 SAMN37645835-rid19575613.guided.15, whole genome shotgun sequence	15470..15907	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	90.91	132 / 131	ABNFYQ010000026.1 Salmonella enterica strain PNUSAS387948 SAMN37645835-rid19575613.denovo.29, whole genome shotgun sequence	86..216	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFYQ010000020.1 Salmonella enterica strain PNUSAS387948 SAMN37645835-rid19575613.denovo.21, whole genome shotgun sequence	6815..7457		enterobacteriales	IncFII(S)	100	262 / 262	ABNFYQ010000022.1 Salmonella enterica strain PNUSAS387948 SAMN37645835-rid19575613.denovo.25, whole genome shotgun sequence	3423..3684																																									avrA	ABNFYQ010000002.1	553636..554505	99.54	870	0						
GCA_032289945.1_PDT001911806.1_genomic.fna	Salmonella_enterica	0.5219	290.42 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFYS010000003.1 Salmonella enterica strain PNUSAS388024 SAMN37646129-rid19576033.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFYS010000055.1 Salmonella enterica strain PNUSAS388024 SAMN37646129-rid19576033.guided.28, whole genome shotgun sequence	16074..16511	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNFYS010000016.1 Salmonella enterica strain PNUSAS388024 SAMN37646129-rid19576033.denovo.16, whole genome shotgun sequence	6822..7464	enterobacteriales	IncFII(S)	100	262 / 262	ABNFYS010000016.1 Salmonella enterica strain PNUSAS388024 SAMN37646129-rid19576033.denovo.16, whole genome shotgun sequence	22549..22810																																																avrA	ABNFYS010000001.1	446736..447604	100	869	0						
GCA_032289965.1_PDT001911807.1_genomic.fna	Salmonella_enterica	0.5208	405.184 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFYO010000001.1 Salmonella enterica strain PNUSAS387963 SAMN37645028-rid19576043.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFYO010000043.1 Salmonella enterica strain PNUSAS387963 SAMN37645028-rid19576043.guided.26, whole genome shotgun sequence	12223..12660	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFYO010000017.1	39348..40218	99.196	871	0						
GCA_032289985.1_PDT001911781.1_genomic.fna	Salmonella_enterica	0.5215	280.288 KB	5	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFYT010000001.1 Salmonella enterica strain PNUSAS387006 SAMN37645816-rid19575873.denovo.01, whole genome shotgun sequence	375096..375533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFYT010000032.1 Salmonella enterica strain PNUSAS387006 SAMN37645816-rid19575873.guided.25, whole genome shotgun sequence	10480..10917	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFYT010000003.1	149431..150300	99.425	870	0						
GCA_032290005.1_PDT001911774.1_genomic.fna	Salmonella_enterica	0.5211	93.204 KB	15	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFYV010000001.1 Salmonella enterica strain PNUSAS387952 SAMN37645853-rid19575813.denovo.01, whole genome shotgun sequence	176496..176933	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNFYV010000096.1 Salmonella enterica strain PNUSAS387952 SAMN37645853-rid19575813.guided.39, whole genome shotgun sequence	32265..32702	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFYV010000005.1	114700..115568	99.195	870	0						
GCA_032290025.1_PDT001911771.1_genomic.fna	Salmonella_enterica	0.5231	397.696 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNFYU010000003.1 Salmonella enterica strain PNUSAS387945 SAMN37645834-rid19575793.denovo.03, whole genome shotgun sequence	480207..480644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNFYU010000029.1 Salmonella enterica strain PNUSAS387945 SAMN37645834-rid19575793.guided.21, whole genome shotgun sequence	12427..12864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFYU010000001.1	509180..510049	99.31	870	0						
GCA_032290045.1_PDT001911762.1_genomic.fna	Salmonella_enterica	0.5192	375.783 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFYY010000001.1 Salmonella enterica strain PNUSAS387941 SAMN37645814-rid19575733.denovo.01, whole genome shotgun sequence	161971..162408	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFYY010000038.1 Salmonella enterica strain PNUSAS387941 SAMN37645814-rid19575733.guided.24, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFYY010000024.1 Salmonella enterica strain PNUSAS387941 SAMN37645814-rid19575733.denovo.26, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNFYY010000016.1 Salmonella enterica strain PNUSAS387941 SAMN37645814-rid19575733.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNFYY010000002.1	585389..586258	99.54	870	0						
GCA_032290065.1_PDT001911755.1_genomic.fna	Salmonella_enterica	0.5234	78.293 KB	18	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFYW010000014.1 Salmonella enterica strain PNUSAS387953 SAMN37645858-rid19575693.denovo.014, whole genome shotgun sequence	12543..12980	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFYW010000100.1 Salmonella enterica strain PNUSAS387953 SAMN37645858-rid19575693.guided.060, whole genome shotgun sequence	14936..15373	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032290085.1_PDT001911750.1_genomic.fna	Salmonella_enterica	0.5216	192.315 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNFYX010000002.1 Salmonella enterica strain PNUSAS387965 SAMN37645023-rid19575293.denovo.02, whole genome shotgun sequence	145063..145500	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNFYX010000043.1 Salmonella enterica strain PNUSAS387965 SAMN37645023-rid19575293.guided.28, whole genome shotgun sequence	22706..23143	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFYX010000005.1	39625..40493	99.77	870	0						
GCA_032290205.1_PDT001911770.1_genomic.fna	Salmonella_enterica	0.5234	75.864 KB	21	aroC_16,dnaN_2,hemD_45,hisD_43,purE_535,sucA_39,thrA_42	2371	8:e,h:1,2	7	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,floR,floR,qnrS1,qnrS1,sul1,sul1,tet(A),tet(A),tet(A),tet(A),dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_535	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFZA010000004.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.denovo.004, whole genome shotgun sequence	98478..98915	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNFZA010000017.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.denovo.017, whole genome shotgun sequence	74945..75736	Spectinomycin, Streptomycin	JX185132	aadA1	100	792/792	ABNFZA010000122.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.guided.087, whole genome shotgun sequence	2060..2851	Spectinomycin, Streptomycin	JX185132	aac(6')-Iaa	98.63	438/438	ABNFZA010000123.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.guided.088, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	ABNFZA010000085.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.denovo.086, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFZA010000126.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.guided.100, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNFZA010000085.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.denovo.086, whole genome shotgun sequence	7882..8538	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNFZA010000125.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.guided.098, whole genome shotgun sequence	3338..3994	Ciprofloxacin	AB187515	sul1	100	840/840	ABNFZA010000017.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.denovo.017, whole genome shotgun sequence	76241..77080	Sulfamethoxazole	U12338	sul1	100	840/840	ABNFZA010000122.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.guided.087, whole genome shotgun sequence	3356..4195	Sulfamethoxazole	U12338	tet(A)	99.92	1200/1200	ABNFZA010000127.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.guided.108, whole genome shotgun sequence	650..1849	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNFZA010000128.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.guided.109, whole genome shotgun sequence	650..1849	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1275/1275	ABNFZA010000129.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.guided.112, whole genome shotgun sequence	575..1849	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1275/1275	ABNFZA010000130.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.guided.113, whole genome shotgun sequence	575..1849	Doxycycline, Tetracycline	AF534183	dfrA1	99.79	474/474	ABNFZA010000017.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.denovo.017, whole genome shotgun sequence	74379..74852	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNFZA010000017.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.denovo.017, whole genome shotgun sequence	74379..74852	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNFZA010000017.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.denovo.017, whole genome shotgun sequence	74379..74852	Trimethoprim	X00926	dfrA1	99.79	474/474	ABNFZA010000122.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.guided.087, whole genome shotgun sequence	1494..1967	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNFZA010000122.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.guided.087, whole genome shotgun sequence	1494..1967	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNFZA010000122.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.guided.087, whole genome shotgun sequence	1494..1967	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNFZA010000063.1 Salmonella enterica strain PNUSAS387950 SAMN37645860-rid19575783.denovo.063, whole genome shotgun sequence	6152..6293																																																						avrA	ABNFZA010000020.1	43533..44402	99.195	870	0						
GCA_032291525.1_PDT001912082.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFZH010000001.1 Salmonella enterica strain PNUSAS388266 SAMN37649886-rid19578683.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFZH010000019.1 Salmonella enterica strain PNUSAS388266 SAMN37649886-rid19578683.guided.14, whole genome shotgun sequence	6974..7411	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFZH010000012.1 Salmonella enterica strain PNUSAS388266 SAMN37649886-rid19578683.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNFZH010000012.1 Salmonella enterica strain PNUSAS388266 SAMN37649886-rid19578683.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNFZH010000002.1	553636..554505	99.54	870	0						
GCA_032291545.1_PDT001912081.1_genomic.fna	Salmonella_enterica	0.5213	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFZG010000001.1 Salmonella enterica strain PNUSAS388269 SAMN37649887-rid19578673.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFZG010000019.1 Salmonella enterica strain PNUSAS388269 SAMN37649887-rid19578673.guided.13, whole genome shotgun sequence	38319..38756	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFZG010000012.1 Salmonella enterica strain PNUSAS388269 SAMN37649887-rid19578673.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNFZG010000012.1 Salmonella enterica strain PNUSAS388269 SAMN37649887-rid19578673.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABNFZG010000002.1	553636..554505	99.54	870	0						
GCA_032291565.1_PDT001912080.1_genomic.fna	Salmonella_enterica	0.5211	521.409 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNFZI010000001.1 Salmonella enterica strain PNUSAS388277 SAMN37649884-rid19578343.denovo.01, whole genome shotgun sequence	1028128..1028565	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNFZI010000017.1 Salmonella enterica strain PNUSAS388277 SAMN37649884-rid19578343.guided.10, whole genome shotgun sequence	18303..18740	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFZI010000002.1	670010..670879	99.77	870	0						
GCA_032291585.1_PDT001912078.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFZJ010000001.1 Salmonella enterica strain PNUSAS388271 SAMN37649868-rid19578653.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFZJ010000020.1 Salmonella enterica strain PNUSAS388271 SAMN37649868-rid19578653.guided.14, whole genome shotgun sequence	706..1143	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFZJ010000012.1 Salmonella enterica strain PNUSAS388271 SAMN37649868-rid19578653.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNFZJ010000014.1 Salmonella enterica strain PNUSAS388271 SAMN37649868-rid19578653.denovo.17, whole genome shotgun sequence	3436..3697																																																avrA	ABNFZJ010000002.1	553636..554505	99.54	870	0						
GCA_032291605.1_PDT001912079.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFZK010000001.1 Salmonella enterica strain PNUSAS388276 SAMN37649871-rid19578663.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFZK010000023.1 Salmonella enterica strain PNUSAS388276 SAMN37649871-rid19578663.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFZK010000012.1 Salmonella enterica strain PNUSAS388276 SAMN37649871-rid19578663.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNFZK010000015.1 Salmonella enterica strain PNUSAS388276 SAMN37649871-rid19578663.denovo.18, whole genome shotgun sequence	3393..3654																																																avrA	ABNFZK010000002.1	553636..554505	99.54	870	0						
GCA_032291625.1_PDT001912076.1_genomic.fna	Salmonella_enterica	0.5189	367.566 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFZN010000001.1 Salmonella enterica strain PNUSAS388286 SAMN37649883-rid19578633.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFZN010000029.1 Salmonella enterica strain PNUSAS388286 SAMN37649883-rid19578633.guided.21, whole genome shotgun sequence	44275..44712	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNFZN010000009.1 Salmonella enterica strain PNUSAS388286 SAMN37649883-rid19578633.denovo.09, whole genome shotgun sequence	27818..28240	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNFZN010000030.1 Salmonella enterica strain PNUSAS388286 SAMN37649883-rid19578633.guided.24, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFZN010000002.1	203789..204658	99.195	870	0						
GCA_032291645.1_PDT001912075.1_genomic.fna	Salmonella_enterica	0.5207	737.752 KB	2	aroC_11,dnaN_10,hemD_25,hisD_42,purE_40,sucA_13,thrA_4	411	4:e,h:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX3(pEC14)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNFZL010000001.1 Salmonella enterica strain PNUSAS388288 SAMN37649879-rid19578333.denovo.01, whole genome shotgun sequence	623457..623894	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNFZL010000020.1 Salmonella enterica strain PNUSAS388288 SAMN37649879-rid19578333.guided.10, whole genome shotgun sequence	12495..12932	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX3(pEC14)	93.58	374 / 374	ABNFZL010000011.1 Salmonella enterica strain PNUSAS388288 SAMN37649879-rid19578333.denovo.13, whole genome shotgun sequence	9336..9709																																																						avrA	ABNFZL010000003.1	94151..95020	99.54	870	0						
GCA_032291665.1_PDT001912077.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFZM010000001.1 Salmonella enterica strain PNUSAS388267 SAMN37649885-rid19578643.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFZM010000022.1 Salmonella enterica strain PNUSAS388267 SAMN37649885-rid19578643.guided.13, whole genome shotgun sequence	32160..32597	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFZM010000012.1 Salmonella enterica strain PNUSAS388267 SAMN37649885-rid19578643.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNFZM010000012.1 Salmonella enterica strain PNUSAS388267 SAMN37649885-rid19578643.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABNFZM010000002.1	553426..554295	99.54	870	0						
GCA_032291685.1_PDT001912074.1_genomic.fna	Salmonella_enterica	0.5197	489.955 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFZO010000001.1 Salmonella enterica strain PNUSAS388279 SAMN37649869-rid19578623.denovo.01, whole genome shotgun sequence	733448..733885	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFZO010000018.1 Salmonella enterica strain PNUSAS388279 SAMN37649869-rid19578623.guided.12, whole genome shotgun sequence	8919..9356	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFZO010000011.1 Salmonella enterica strain PNUSAS388279 SAMN37649869-rid19578623.denovo.11, whole genome shotgun sequence	40554..41196	enterobacteriales	IncFII(S)	100	262 / 262	ABNFZO010000011.1 Salmonella enterica strain PNUSAS388279 SAMN37649869-rid19578623.denovo.11, whole genome shotgun sequence	55636..55897		enterobacteriales	IncX1	98.93	374 / 374	ABNFZO010000012.1 Salmonella enterica strain PNUSAS388279 SAMN37649869-rid19578623.denovo.13, whole genome shotgun sequence	4112..4485																																									avrA	ABNFZO010000002.1	553401..554270	99.54	870	0						
GCA_032291705.1_PDT001912073.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFZP010000001.1 Salmonella enterica strain PNUSAS388273 SAMN37649876-rid19578613.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFZP010000021.1 Salmonella enterica strain PNUSAS388273 SAMN37649876-rid19578613.guided.15, whole genome shotgun sequence	21577..22014	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFZP010000013.1 Salmonella enterica strain PNUSAS388273 SAMN37649876-rid19578613.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNFZP010000015.1 Salmonella enterica strain PNUSAS388273 SAMN37649876-rid19578613.denovo.18, whole genome shotgun sequence	3393..3654																																																avrA	ABNFZP010000002.1	553636..554505	99.54	870	0						
GCA_032291725.1_PDT001912072.1_genomic.fna	Salmonella_enterica	0.5213	478.79 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFZQ010000001.1 Salmonella enterica strain PNUSAS388284 SAMN37649877-rid19578603.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFZQ010000023.1 Salmonella enterica strain PNUSAS388284 SAMN37649877-rid19578603.guided.16, whole genome shotgun sequence	7283..7720	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFZQ010000013.1 Salmonella enterica strain PNUSAS388284 SAMN37649877-rid19578603.denovo.13, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABNFZQ010000016.1 Salmonella enterica strain PNUSAS388284 SAMN37649877-rid19578603.denovo.19, whole genome shotgun sequence	3412..3673																																																avrA	ABNFZQ010000002.1	585418..586287	99.54	870	0						
GCA_032291745.1_PDT001912071.1_genomic.fna	Salmonella_enterica	0.5222	761.796 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNFZR010000001.1 Salmonella enterica strain PNUSAS388283 SAMN37649873-rid19578593.denovo.01, whole genome shotgun sequence	482101..482538	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNFZR010000019.1 Salmonella enterica strain PNUSAS388283 SAMN37649873-rid19578593.guided.15, whole genome shotgun sequence	33574..34011	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNFZR010000005.1	151320..152189	99.77	870	0						
GCA_032291765.1_PDT001912070.1_genomic.fna	Salmonella_enterica	0.5216	442.85 KB	4	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNFZS010000001.1 Salmonella enterica strain PNUSAS388270 SAMN37649872-rid19578323.denovo.01, whole genome shotgun sequence	134472..134909	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNFZS010000024.1 Salmonella enterica strain PNUSAS388270 SAMN37649872-rid19578323.guided.19, whole genome shotgun sequence	8011..8448	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032291785.1_PDT001912068.1_genomic.fna	Salmonella_enterica	0.521	509.935 KB	2	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNFZT010000001.1 Salmonella enterica strain PNUSAS388282 SAMN37649875-rid19578573.denovo.01, whole genome shotgun sequence	648005..648442	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNFZT010000034.1 Salmonella enterica strain PNUSAS388282 SAMN37649875-rid19578573.guided.24, whole genome shotgun sequence	2848..3285	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFZT010000003.1	192277..193146	99.425	870	0						
GCA_032291805.1_PDT001912069.1_genomic.fna	Salmonella_enterica	0.5202	379.571 KB	5	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNFZU010000001.1 Salmonella enterica strain PNUSAS388268 SAMN37649874-rid19578583.denovo.01, whole genome shotgun sequence	346964..347401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNFZU010000044.1 Salmonella enterica strain PNUSAS388268 SAMN37649874-rid19578583.guided.24, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFZU010000007.1	94141..95010	99.54	870	0						
GCA_032291825.1_PDT001912065.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFZW010000001.1 Salmonella enterica strain PNUSAS388278 SAMN37649870-rid19578313.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFZW010000021.1 Salmonella enterica strain PNUSAS388278 SAMN37649870-rid19578313.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFZW010000012.1 Salmonella enterica strain PNUSAS388278 SAMN37649870-rid19578313.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNFZW010000012.1 Salmonella enterica strain PNUSAS388278 SAMN37649870-rid19578313.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNFZW010000002.1	553636..554505	99.54	870	0						
GCA_032291845.1_PDT001912067.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFZV010000001.1 Salmonella enterica strain PNUSAS388285 SAMN37649880-rid19578563.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFZV010000022.1 Salmonella enterica strain PNUSAS388285 SAMN37649880-rid19578563.guided.18, whole genome shotgun sequence	363..800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFZV010000013.1 Salmonella enterica strain PNUSAS388285 SAMN37649880-rid19578563.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNFZV010000013.1 Salmonella enterica strain PNUSAS388285 SAMN37649880-rid19578563.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNFZV010000002.1	553636..554505	99.54	870	0						
GCA_032291865.1_PDT001912066.1_genomic.fna	Salmonella_enterica	0.5205	438.302 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNFZX010000001.1 Salmonella enterica strain PNUSAS388274 SAMN37649878-rid19578553.denovo.01, whole genome shotgun sequence	722310..722747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNFZX010000021.1 Salmonella enterica strain PNUSAS388274 SAMN37649878-rid19578553.guided.12, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNFZX010000002.1	563609..564478	99.77	870	0						
GCA_032291885.1_PDT001912064.1_genomic.fna	Salmonella_enterica	0.5213	420.978 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.S83Y	1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNFZY010000005.1 Salmonella enterica strain PNUSAS388289 SAMN37649882-rid19578543.denovo.05, whole genome shotgun sequence	159453..159890	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFZY010000016.1 Salmonella enterica strain PNUSAS388289 SAMN37649882-rid19578543.denovo.17, whole genome shotgun sequence	26367..27203	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFZY010000016.1 Salmonella enterica strain PNUSAS388289 SAMN37649882-rid19578543.denovo.17, whole genome shotgun sequence	25564..26367	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNFZY010000031.1 Salmonella enterica strain PNUSAS388289 SAMN37649882-rid19578543.guided.18, whole genome shotgun sequence	5286..5723	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNFZY010000033.1 Salmonella enterica strain PNUSAS388289 SAMN37649882-rid19578543.guided.23, whole genome shotgun sequence	12609..13445	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNFZY010000033.1 Salmonella enterica strain PNUSAS388289 SAMN37649882-rid19578543.guided.23, whole genome shotgun sequence	11806..12609	Streptomycin	AF321551	floR	98.19	1214/1215	ABNFZY010000016.1 Salmonella enterica strain PNUSAS388289 SAMN37649882-rid19578543.denovo.17, whole genome shotgun sequence	30339..31552	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNFZY010000034.1 Salmonella enterica strain PNUSAS388289 SAMN37649882-rid19578543.guided.26, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNFZY010000016.1 Salmonella enterica strain PNUSAS388289 SAMN37649882-rid19578543.denovo.17, whole genome shotgun sequence	24688..25503	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNFZY010000033.1 Salmonella enterica strain PNUSAS388289 SAMN37649882-rid19578543.guided.23, whole genome shotgun sequence	10930..11745	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNFZY010000016.1 Salmonella enterica strain PNUSAS388289 SAMN37649882-rid19578543.denovo.17, whole genome shotgun sequence	28464..29738	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNFZY010000033.1 Salmonella enterica strain PNUSAS388289 SAMN37649882-rid19578543.guided.23, whole genome shotgun sequence	14706..15980	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFII(S)	97.71	262 / 262	ABNFZY010000019.1 Salmonella enterica strain PNUSAS388289 SAMN37649882-rid19578543.denovo.21, whole genome shotgun sequence	67..326																																																						avrA	ABNFZY010000007.1	173547..174415	99.54	870	0						
GCA_032291905.1_PDT001912063.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNFZZ010000001.1 Salmonella enterica strain PNUSAS388280 SAMN37649881-rid19578533.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNFZZ010000021.1 Salmonella enterica strain PNUSAS388280 SAMN37649881-rid19578533.guided.16, whole genome shotgun sequence	10854..11291	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNFZZ010000013.1 Salmonella enterica strain PNUSAS388280 SAMN37649881-rid19578533.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNFZZ010000015.1 Salmonella enterica strain PNUSAS388280 SAMN37649881-rid19578533.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABNFZZ010000002.1	553636..554505	99.54	870	0						
GCA_032291925.1_PDT001912062.1_genomic.fna	Salmonella_enterica	0.5211	266.637 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGAA010000002.1 Salmonella enterica strain PNUSAS388287 SAMN37649824-rid19578523.denovo.02, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGAA010000046.1 Salmonella enterica strain PNUSAS388287 SAMN37649824-rid19578523.guided.30, whole genome shotgun sequence	25989..26426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABNGAA010000036.1 Salmonella enterica strain PNUSAS388287 SAMN37649824-rid19578523.denovo.39, whole genome shotgun sequence	483..636																																																						avrA	ABNGAA010000006.1	184453..185321	99.77	870	0						
GCA_032291945.1_PDT001912061.1_genomic.fna	Salmonella_enterica	0.5221	582.665 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNGAB010000001.1 Salmonella enterica strain PNUSAS388265 SAMN37649829-rid19578513.denovo.01, whole genome shotgun sequence	652653..653090	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNGAB010000022.1 Salmonella enterica strain PNUSAS388265 SAMN37649829-rid19578513.guided.17, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGAB010000003.1	131917..132786	98.966	870	0						
GCA_032291965.1_PDT001912060.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGAC010000001.1 Salmonella enterica strain PNUSAS388272 SAMN37649828-rid19578303.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGAC010000018.1 Salmonella enterica strain PNUSAS388272 SAMN37649828-rid19578303.guided.11, whole genome shotgun sequence	43394..43831	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGAC010000012.1 Salmonella enterica strain PNUSAS388272 SAMN37649828-rid19578303.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNGAC010000012.1 Salmonella enterica strain PNUSAS388272 SAMN37649828-rid19578303.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNGAC010000002.1	553636..554505	99.54	870	0						
GCA_032292005.1_PDT001912059.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGAD010000001.1 Salmonella enterica strain PNUSAS388275 SAMN37649827-rid19578503.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGAD010000020.1 Salmonella enterica strain PNUSAS388275 SAMN37649827-rid19578503.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGAD010000012.1 Salmonella enterica strain PNUSAS388275 SAMN37649827-rid19578503.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNGAD010000012.1 Salmonella enterica strain PNUSAS388275 SAMN37649827-rid19578503.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNGAD010000002.1	553636..554505	99.54	870	0						
GCA_032292025.1_PDT001912058.1_genomic.fna	Salmonella_enterica	0.5213	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGAF010000001.1 Salmonella enterica strain PNUSAS388281 SAMN37649826-rid19578493.denovo.01, whole genome shotgun sequence	780548..780985	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGAF010000019.1 Salmonella enterica strain PNUSAS388281 SAMN37649826-rid19578493.guided.13, whole genome shotgun sequence	34173..34610	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGAF010000012.1 Salmonella enterica strain PNUSAS388281 SAMN37649826-rid19578493.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNGAF010000014.1 Salmonella enterica strain PNUSAS388281 SAMN37649826-rid19578493.denovo.17, whole genome shotgun sequence	3418..3679																																																avrA	ABNGAF010000002.1	553636..554505	99.54	870	0						
GCA_032292045.1_PDT001912057.1_genomic.fna	Salmonella_enterica	0.5215	258.007 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_19,thrA_1	679	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGAE010000002.1 Salmonella enterica strain PNUSAS388290 SAMN37649825-rid19578483.denovo.02, whole genome shotgun sequence	112919..113356	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGAE010000035.1 Salmonella enterica strain PNUSAS388290 SAMN37649825-rid19578483.guided.23, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGAE010000006.1	153529..154395	99.08	870	0						
GCA_032292225.1_PDT001912020.1_genomic.fna	Salmonella_enterica	0.5224	65.917 KB	22	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGAQ010000002.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325424 SAMN37649518-rid19578173.denovo.002, whole genome shotgun sequence	20184..20621	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGAQ010000158.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325424 SAMN37649518-rid19578173.guided.055, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGAQ010000095.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325424 SAMN37649518-rid19578173.denovo.097, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNGAQ010000099.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325424 SAMN37649518-rid19578173.denovo.101, whole genome shotgun sequence	3413..3674																																																avrA	ABNGAQ010000004.1	62008..62877	99.54	870	0						
GCA_032292235.1_PDT001912021.1_genomic.fna	Salmonella_enterica	0.5192	430.127 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGAP010000001.1 Salmonella enterica strain PNUSAS388215 SAMN37649516-rid19577863.denovo.01, whole genome shotgun sequence	477567..478004	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGAP010000028.1 Salmonella enterica strain PNUSAS388215 SAMN37649516-rid19577863.guided.13, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGAP010000011.1	140075..140943	99.195	870	0						
GCA_032292285.1_PDT001912019.1_genomic.fna	Salmonella_enterica	0.5196	92.393 KB	18	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	5	ColpVC,IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGAS010000014.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325425 SAMN37649519-rid19578163.denovo.014, whole genome shotgun sequence	81388..81825	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGAS010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325425 SAMN37649519-rid19578163.denovo.083, whole genome shotgun sequence	6427..7263	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGAS010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325425 SAMN37649519-rid19578163.denovo.083, whole genome shotgun sequence	7263..8066	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNGAS010000139.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325425 SAMN37649519-rid19578163.guided.062, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGAS010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325425 SAMN37649519-rid19578163.guided.092, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGAS010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325425 SAMN37649519-rid19578163.guided.092, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNGAS010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325425 SAMN37649519-rid19578163.denovo.102, whole genome shotgun sequence	2162..3367	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNGAS010000143.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325425 SAMN37649519-rid19578163.guided.112, whole genome shotgun sequence	160..1365	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNGAS010000105.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325425 SAMN37649519-rid19578163.denovo.109, whole genome shotgun sequence	124..316	enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNGAS010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325425 SAMN37649519-rid19578163.denovo.100, whole genome shotgun sequence	1155..1836		enterobacteriales	IncFII	96.95	262 / 261	ABNGAS010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325425 SAMN37649519-rid19578163.denovo.083, whole genome shotgun sequence	5543..5804		enterobacteriales	IncFII	96.95	262 / 261	ABNGAS010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325425 SAMN37649519-rid19578163.guided.092, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNGAS010000067.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325425 SAMN37649519-rid19578163.denovo.069, whole genome shotgun sequence	2405..2546		enterobacteriales	IncX1	100	373 / 373	ABNGAS010000089.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325425 SAMN37649519-rid19578163.denovo.093, whole genome shotgun sequence	2153..2525																				avrA	ABNGAS010000033.1	39614..40483	99.655	870	0						
GCA_032292305.1_PDT001912018.1_genomic.fna	Salmonella_enterica	0.5214	400.789 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGAT010000004.1 Salmonella enterica strain PNUSAS388214 SAMN37649517-rid19578153.denovo.04, whole genome shotgun sequence	162389..162826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGAT010000026.1 Salmonella enterica strain PNUSAS388214 SAMN37649517-rid19578153.guided.20, whole genome shotgun sequence	13914..14351	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGAT010000017.1 Salmonella enterica strain PNUSAS388214 SAMN37649517-rid19578153.denovo.17, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNGAT010000017.1 Salmonella enterica strain PNUSAS388214 SAMN37649517-rid19578153.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABNGAT010000001.1	553077..553946	99.54	870	0						
GCA_032292325.1_PDT001912012.1_genomic.fna	Salmonella_enterica	0.5225	78.727 KB	21	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	-:g,m,s:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncQ1	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGAR010000053.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325420 SAMN37649512-rid19577833.denovo.055, whole genome shotgun sequence	14095..14532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGAR010000116.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325420 SAMN37649512-rid19577833.guided.064, whole genome shotgun sequence	14136..14573	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNGAR010000096.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325420 SAMN37649512-rid19577833.denovo.100, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNGAR010000118.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325420 SAMN37649512-rid19577833.guided.104, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNGAR010000090.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325420 SAMN37649512-rid19577833.denovo.094, whole genome shotgun sequence	3199..3327	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNGAR010000096.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325420 SAMN37649512-rid19577833.denovo.100, whole genome shotgun sequence	1522..1652		enterobacteriales	IncQ1	100	796 / 796	ABNGAR010000084.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325420 SAMN37649512-rid19577833.denovo.088, whole genome shotgun sequence	292..1087																																									avrA	ABNGAR010000007.1	94524..95393	99.425	870	0						
GCA_032292345.1_PDT001912011.1_genomic.fna	Salmonella_enterica	0.5218	131.961 KB	13	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNGAU010000010.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain FSIS12325419 SAMN37649511-rid19577823.denovo.10, whole genome shotgun sequence	60306..60743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNGAU010000077.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain FSIS12325419 SAMN37649511-rid19577823.guided.46, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGAU010000003.1	95231..96100	99.54	870	0						
GCA_032292365.1_PDT001912010.1_genomic.fna	Salmonella_enterica	0.5226	51.409 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		1	ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGAV010000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325422 SAMN37649514-rid19577813.denovo.018, whole genome shotgun sequence	15456..15893	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNGAV010000086.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325422 SAMN37649514-rid19577813.denovo.087, whole genome shotgun sequence	12506..13408	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNGAV010000086.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325422 SAMN37649514-rid19577813.denovo.087, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNGAV010000152.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325422 SAMN37649514-rid19577813.guided.091, whole genome shotgun sequence	5566..6003	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNGAV010000156.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325422 SAMN37649514-rid19577813.guided.116, whole genome shotgun sequence	37..939	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNGAV010000157.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325422 SAMN37649514-rid19577813.guided.127, whole genome shotgun sequence	3505..4296	Spectinomycin, Streptomycin	JQ414041	sul2	100	816/816	ABNGAV010000024.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325422 SAMN37649514-rid19577813.denovo.024, whole genome shotgun sequence	5050..5865	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNGAV010000086.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325422 SAMN37649514-rid19577813.denovo.087, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul2	100	816/816	ABNGAV010000154.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325422 SAMN37649514-rid19577813.guided.095, whole genome shotgun sequence	10178..10993	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNGAV010000155.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325422 SAMN37649514-rid19577813.guided.113, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABNGAV010000024.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325422 SAMN37649514-rid19577813.denovo.024, whole genome shotgun sequence	1674..2873	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNGAV010000135.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325422 SAMN37649514-rid19577813.denovo.143, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABNGAV010000154.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325422 SAMN37649514-rid19577813.guided.095, whole genome shotgun sequence	13170..14369	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNGAV010000158.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325422 SAMN37649514-rid19577813.guided.141, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	ColpVC	98.96	193 / 193	ABNGAV010000134.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325422 SAMN37649514-rid19577813.denovo.142, whole genome shotgun sequence	805..997																																																						avrA	ABNGAV010000009.1	95120..95989	99.885	870	0						
GCA_032292385.1_PDT001912009.1_genomic.fna	Salmonella_enterica	0.5225	51.639 KB	29	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGAW010000053.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325423 SAMN37649515-rid19578113.denovo.053, whole genome shotgun sequence	16056..16493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGAW010000172.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325423 SAMN37649515-rid19578113.guided.055, whole genome shotgun sequence	14092..14529	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	98.96	193 / 193	ABNGAW010000147.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325423 SAMN37649515-rid19578113.denovo.150, whole genome shotgun sequence	677..869	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGAW010000107.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325423 SAMN37649515-rid19578113.denovo.110, whole genome shotgun sequence	6814..7456		enterobacteriales	IncFII(S)	100	262 / 262	ABNGAW010000124.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325423 SAMN37649515-rid19578113.denovo.127, whole genome shotgun sequence	3388..3649																																									avrA	ABNGAW010000023.1	61534..62403	99.54	870	0						
GCA_032292405.1_PDT001912008.1_genomic.fna	Salmonella_enterica	0.5194	62.084 KB	25	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGAY010000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325421 SAMN37649513-rid19578103.denovo.008, whole genome shotgun sequence	85826..86263	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGAY010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325421 SAMN37649513-rid19578103.denovo.067, whole genome shotgun sequence	3554..4390	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNGAY010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325421 SAMN37649513-rid19578103.denovo.067, whole genome shotgun sequence	2752..3554	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGAY010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325421 SAMN37649513-rid19578103.denovo.067, whole genome shotgun sequence	2751..3554	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGAY010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325421 SAMN37649513-rid19578103.denovo.067, whole genome shotgun sequence	2751..3554	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGAY010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325421 SAMN37649513-rid19578103.denovo.067, whole genome shotgun sequence	2751..3554	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNGAY010000197.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325421 SAMN37649513-rid19578103.guided.059, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGAY010000199.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325421 SAMN37649513-rid19578103.guided.118, whole genome shotgun sequence	2795..3631	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNGAY010000199.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325421 SAMN37649513-rid19578103.guided.118, whole genome shotgun sequence	1993..2795	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGAY010000199.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325421 SAMN37649513-rid19578103.guided.118, whole genome shotgun sequence	1992..2795	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGAY010000199.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325421 SAMN37649513-rid19578103.guided.118, whole genome shotgun sequence	1992..2795	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGAY010000199.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325421 SAMN37649513-rid19578103.guided.118, whole genome shotgun sequence	1992..2795	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNGAY010000067.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325421 SAMN37649513-rid19578103.denovo.070, whole genome shotgun sequence	10246..10572	enterobacteriales	IncHI2A	99.37	630 / 630	ABNGAY010000105.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325421 SAMN37649513-rid19578103.denovo.108, whole genome shotgun sequence	2785..3414		enterobacteriales	IncX1	100	373 / 373	ABNGAY010000128.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325421 SAMN37649513-rid19578103.denovo.132, whole genome shotgun sequence	2153..2525																																									avrA	ABNGAY010000035.1	39484..40353	99.655	870	0						
GCA_032292425.1_PDT001912006.1_genomic.fna	Salmonella_enterica	0.5227	60.426 KB	27	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-44,blaCMY-33,floR,floR,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	1	IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGBD010000025.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325417 SAMN37649509-rid19577793.denovo.025, whole genome shotgun sequence	13781..14218	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGBD010000055.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325417 SAMN37649509-rid19577793.denovo.056, whole genome shotgun sequence	2547..3383	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGBD010000055.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325417 SAMN37649509-rid19577793.denovo.056, whole genome shotgun sequence	3383..4186	Streptomycin	AF321551	aac(6')-Iaa	99.54	438/438	ABNGBD010000151.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325417 SAMN37649509-rid19577793.guided.099, whole genome shotgun sequence	8205..8642	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGBD010000152.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325417 SAMN37649509-rid19577793.guided.116, whole genome shotgun sequence	1788..2624	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGBD010000152.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325417 SAMN37649509-rid19577793.guided.116, whole genome shotgun sequence	985..1788	Streptomycin	AF321551	blaCMY-44	100	936/1134	ABNGBD010000154.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325417 SAMN37649509-rid19577793.guided.139, whole genome shotgun sequence	201..1136	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	FJ437066	blaCMY-33	100	936/1140	ABNGBD010000154.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325417 SAMN37649509-rid19577793.guided.139, whole genome shotgun sequence	201..1136	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	EU496816	floR	98.27	1214/1215	ABNGBD010000107.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325417 SAMN37649509-rid19577793.denovo.110, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNGBD010000153.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325417 SAMN37649509-rid19577793.guided.120, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNGBD010000055.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325417 SAMN37649509-rid19577793.denovo.056, whole genome shotgun sequence	4247..5062	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNGBD010000152.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325417 SAMN37649509-rid19577793.guided.116, whole genome shotgun sequence	109..924	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNGBD010000055.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325417 SAMN37649509-rid19577793.denovo.056, whole genome shotgun sequence	12..1286	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNGBD010000152.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325417 SAMN37649509-rid19577793.guided.116, whole genome shotgun sequence	3885..5159	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncC	100	417 / 417	ABNGBD010000075.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325417 SAMN37649509-rid19577793.denovo.076, whole genome shotgun sequence	1580..1996																																																						avrA	ABNGBD010000011.1	83810..84680	99.656	871	0						
GCA_032292445.1_PDT001912007.1_genomic.fna	Salmonella_enterica	0.5228	75.267 KB	18	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_534,thrA_33	2675	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_534	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNGBB010000010.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325418 SAMN37649510-rid19577803.denovo.010, whole genome shotgun sequence	12513..12950	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNGBB010000115.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325418 SAMN37649510-rid19577803.guided.077, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGBB010000006.1	81669..82537	99.425	870	0						
GCA_032292545.1_PDT001912001.1_genomic.fna	Salmonella_enterica	0.5198	88.147 KB	23	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGBE010000013.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325415 SAMN37649507-rid19577763.denovo.013, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGBE010000075.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325415 SAMN37649507-rid19577763.denovo.078, whole genome shotgun sequence	9460..10296	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNGBE010000075.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325415 SAMN37649507-rid19577763.denovo.078, whole genome shotgun sequence	10296..11099	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNGBE010000158.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325415 SAMN37649507-rid19577763.guided.055, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGBE010000160.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325415 SAMN37649507-rid19577763.guided.101, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNGBE010000160.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325415 SAMN37649507-rid19577763.guided.101, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNGBE010000104.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325415 SAMN37649507-rid19577763.denovo.108, whole genome shotgun sequence	2197..3402	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNGBE010000161.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325415 SAMN37649507-rid19577763.guided.109, whole genome shotgun sequence	2228..3433	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNGBE010000108.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325415 SAMN37649507-rid19577763.denovo.113, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNGBE010000075.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325415 SAMN37649507-rid19577763.denovo.078, whole genome shotgun sequence	8576..8837		enterobacteriales	IncFII	96.95	262 / 261	ABNGBE010000160.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325415 SAMN37649507-rid19577763.guided.101, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNGBE010000087.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325415 SAMN37649507-rid19577763.denovo.090, whole genome shotgun sequence	4649..4790		enterobacteriales	IncX1	100	373 / 373	ABNGBE010000118.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325415 SAMN37649507-rid19577763.denovo.123, whole genome shotgun sequence	2153..2525																											avrA	ABNGBE010000043.1	39484..40353	99.655	870	0						
GCA_032292585.1_PDT001911998.1_genomic.fna	Salmonella_enterica	0.5221	80.022 KB	21	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGBG010000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325163 SAMN37649506-rid19578063.denovo.006, whole genome shotgun sequence	38054..38491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGBG010000119.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325163 SAMN37649506-rid19578063.guided.073, whole genome shotgun sequence	7329..7766	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGBG010000005.1	104938..105806	99.77	870	0						
GCA_032292625.1_PDT001911997.1_genomic.fna	Salmonella_enterica	0.5216	78.391 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGBI010000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325416 SAMN37649508-rid19577743.denovo.007, whole genome shotgun sequence	83559..83996	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGBI010000126.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325416 SAMN37649508-rid19577743.guided.087, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNGBI010000076.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325416 SAMN37649508-rid19577743.denovo.077, whole genome shotgun sequence	1565..2710	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNGBI010000128.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325416 SAMN37649508-rid19577743.guided.100, whole genome shotgun sequence	561..1706	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNGBI010000087.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325416 SAMN37649508-rid19577743.denovo.090, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNGBI010000127.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325416 SAMN37649508-rid19577743.guided.091, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNGBI010000087.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325416 SAMN37649508-rid19577743.denovo.090, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGBI010000127.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325416 SAMN37649508-rid19577743.guided.091, whole genome shotgun sequence	4544..5743	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNGBI010000092.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325416 SAMN37649508-rid19577743.denovo.096, whole genome shotgun sequence	1326..1445	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNGBI010000097.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325416 SAMN37649508-rid19577743.denovo.102, whole genome shotgun sequence	3134..3264		enterobacteriales	IncC	100	417 / 417	ABNGBI010000041.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325416 SAMN37649508-rid19577743.denovo.041, whole genome shotgun sequence	38349..38765																																									avrA	ABNGBI010000009.1	102351..103220	99.885	870	0						
GCA_032292665.1_PDT001911995.1_genomic.fna	Salmonella_enterica	0.5209	341.373 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGBK010000003.1 Salmonella enterica strain PNUSAS388184 SAMN37649493-rid19577723.denovo.03, whole genome shotgun sequence	64526..64963	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGBK010000045.1 Salmonella enterica strain PNUSAS388184 SAMN37649493-rid19577723.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNGBK010000016.1 Salmonella enterica strain PNUSAS388184 SAMN37649493-rid19577723.denovo.17, whole genome shotgun sequence	48383..49025	enterobacteriales	IncFII(S)	100	262 / 262	ABNGBK010000016.1 Salmonella enterica strain PNUSAS388184 SAMN37649493-rid19577723.denovo.17, whole genome shotgun sequence	64110..64371																																																avrA	ABNGBK010000004.1	209589..210457	100	869	0						
GCA_032292685.1_PDT001911993.1_genomic.fna	Salmonella_enterica	0.5208	399.38 KB	6	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGBM010000004.1 Salmonella enterica strain PNUSAS388185 SAMN37649491-rid19578043.denovo.04, whole genome shotgun sequence	380333..380770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGBM010000028.1 Salmonella enterica strain PNUSAS388185 SAMN37649491-rid19578043.guided.18, whole genome shotgun sequence	23961..24398	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032292705.1_PDT001911994.1_genomic.fna	Salmonella_enterica	0.5211	219.38 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGBL010000002.1 Salmonella enterica strain PNUSAS388187 SAMN37649487-rid19578053.denovo.02, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	386/438	ABNGBL010000047.1 Salmonella enterica strain PNUSAS388187 SAMN37649487-rid19578053.guided.47, whole genome shotgun sequence	1..386	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNGBL010000034.1 Salmonella enterica strain PNUSAS388187 SAMN37649487-rid19578053.denovo.36, whole genome shotgun sequence	967..1118																																																						avrA	ABNGBL010000005.1	184436..185304	99.77	870	0						
GCA_032292725.1_PDT001911992.1_genomic.fna	Salmonella_enterica	0.5204	478.725 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGBN010000001.1 Salmonella enterica strain PNUSAS388186 SAMN37649489-rid19577713.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGBN010000025.1 Salmonella enterica strain PNUSAS388186 SAMN37649489-rid19577713.guided.12, whole genome shotgun sequence	41593..42030	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGBN010000012.1 Salmonella enterica strain PNUSAS388186 SAMN37649489-rid19577713.denovo.14, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	ABNGBN010000018.1 Salmonella enterica strain PNUSAS388186 SAMN37649489-rid19577713.denovo.21, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	98.93	374 / 374	ABNGBN010000014.1 Salmonella enterica strain PNUSAS388186 SAMN37649489-rid19577713.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNGBN010000002.1	505593..506462	99.54	870	0						
GCA_032292745.1_PDT001911991.1_genomic.fna	Salmonella_enterica	0.5194	466.419 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGBO010000001.1 Salmonella enterica strain PNUSAS388191 SAMN37649494-rid19577703.denovo.01, whole genome shotgun sequence	287377..287814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGBO010000027.1 Salmonella enterica strain PNUSAS388191 SAMN37649494-rid19577703.guided.12, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNGBO010000018.1 Salmonella enterica strain PNUSAS388191 SAMN37649494-rid19577703.denovo.21, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNGBO010000012.1 Salmonella enterica strain PNUSAS388191 SAMN37649494-rid19577703.denovo.13, whole genome shotgun sequence	2563..3096		enterobacteriales	IncX1	98.4	374 / 374	ABNGBO010000015.1 Salmonella enterica strain PNUSAS388191 SAMN37649494-rid19577703.denovo.17, whole genome shotgun sequence	6956..7329																																									avrA	ABNGBO010000008.1	150695..151565	99.196	871	0						
GCA_032292765.1_PDT001911990.1_genomic.fna	Salmonella_enterica	0.5192	466.546 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGBP010000001.1 Salmonella enterica strain PNUSAS388192 SAMN37649492-rid19577693.denovo.01, whole genome shotgun sequence	287377..287814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGBP010000026.1 Salmonella enterica strain PNUSAS388192 SAMN37649492-rid19577693.guided.10, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNGBP010000017.1 Salmonella enterica strain PNUSAS388192 SAMN37649492-rid19577693.denovo.20, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNGBP010000012.1 Salmonella enterica strain PNUSAS388192 SAMN37649492-rid19577693.denovo.14, whole genome shotgun sequence	2579..3112		enterobacteriales	IncX1	98.4	374 / 374	ABNGBP010000014.1 Salmonella enterica strain PNUSAS388192 SAMN37649492-rid19577693.denovo.16, whole genome shotgun sequence	6956..7329																																									avrA	ABNGBP010000008.1	150695..151565	99.196	871	0						
GCA_032292785.1_PDT001911989.1_genomic.fna	Salmonella_enterica	0.5198	466.52 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGBQ010000001.1 Salmonella enterica strain PNUSAS388189 SAMN37649488-rid19578033.denovo.01, whole genome shotgun sequence	287377..287814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGBQ010000024.1 Salmonella enterica strain PNUSAS388189 SAMN37649488-rid19578033.guided.20, whole genome shotgun sequence	2168..2605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNGBQ010000017.1 Salmonella enterica strain PNUSAS388189 SAMN37649488-rid19578033.denovo.19, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNGBQ010000012.1 Salmonella enterica strain PNUSAS388189 SAMN37649488-rid19578033.denovo.12, whole genome shotgun sequence	2465..2998		enterobacteriales	IncX1	98.4	374 / 374	ABNGBQ010000014.1 Salmonella enterica strain PNUSAS388189 SAMN37649488-rid19578033.denovo.14, whole genome shotgun sequence	6956..7329																																									avrA	ABNGBQ010000008.1	150695..151565	99.196	871	0						
GCA_032292805.1_PDT001911987.1_genomic.fna	Salmonella_enterica	0.5209	282.342 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(M),tet(B),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGBU010000001.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNGBU010000030.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.32, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNGBU010000030.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.32, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNGBU010000040.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.44, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGBU010000040.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.44, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNGBU010000054.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.guided.24, whole genome shotgun sequence	42353..42790	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNGBU010000056.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.guided.38, whole genome shotgun sequence	4402..5193	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNGBU010000057.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.guided.46, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNGBU010000061.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.guided.56, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGBU010000061.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.guided.56, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNGBU010000046.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.53, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNGBU010000062.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.guided.57, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABNGBU010000030.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.32, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNGBU010000041.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.45, whole genome shotgun sequence	1097..2310	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABNGBU010000056.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.guided.38, whole genome shotgun sequence	5455..6714	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNGBU010000057.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.guided.46, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNGBU010000059.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.guided.51, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNGBU010000040.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.44, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNGBU010000063.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.guided.60, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNGBU010000064.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.guided.61, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNGBU010000065.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.guided.62, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNGBU010000066.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.guided.63, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNGBU010000028.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.30, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNGBU010000030.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.32, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABNGBU010000058.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.guided.48, whole genome shotgun sequence	600..2519	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNGBU010000060.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.guided.54, whole genome shotgun sequence	224..1429	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABNGBU010000030.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.32, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABNGBU010000056.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.guided.38, whole genome shotgun sequence	3497..3994	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																								enterobacteriales	Col156	94.81	154 / 154	ABNGBU010000035.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.39, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABNGBU010000044.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.50, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABNGBU010000047.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.55, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNGBU010000038.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.42, whole genome shotgun sequence	2183..2864		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNGBU010000021.1 Salmonella enterica strain PNUSAS388190 SAMN37649490-rid19577683.denovo.21, whole genome shotgun sequence	55562..56058																											avrA	ABNGBU010000002.1	508765..509634	99.885	870	0						
GCA_032292825.1_PDT001911988.1_genomic.fna	Salmonella_enterica	0.5197	508.314 KB	2	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGBR010000001.1 Salmonella enterica strain PNUSAS388175 SAMN37649486-rid19578023.denovo.01, whole genome shotgun sequence	655199..655636	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGBR010000021.1 Salmonella enterica strain PNUSAS388175 SAMN37649486-rid19578023.guided.17, whole genome shotgun sequence	10707..11144	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNGBR010000015.1 Salmonella enterica strain PNUSAS388175 SAMN37649486-rid19578023.denovo.18, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNGBR010000011.1 Salmonella enterica strain PNUSAS388175 SAMN37649486-rid19578023.denovo.11, whole genome shotgun sequence	6118..6651		enterobacteriales	IncX1	98.4	374 / 374	ABNGBR010000013.1 Salmonella enterica strain PNUSAS388175 SAMN37649486-rid19578023.denovo.14, whole genome shotgun sequence	6956..7329																																									avrA	ABNGBR010000007.1	150695..151565	99.196	871	0						
GCA_032292845.1_PDT001911986.1_genomic.fna	Salmonella_enterica	0.5215	375.624 KB	6	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGBS010000001.1 Salmonella enterica strain PNUSAS388174 SAMN37649483-rid19577673.denovo.01, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGBS010000030.1 Salmonella enterica strain PNUSAS388174 SAMN37649483-rid19577673.guided.15, whole genome shotgun sequence	44304..44741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNGBS010000023.1 Salmonella enterica strain PNUSAS388174 SAMN37649483-rid19577673.denovo.26, whole genome shotgun sequence	557..687																																																						avrA	ABNGBS010000012.1	36961..37830	99.425	870	0						
GCA_032292865.1_PDT001911985.1_genomic.fna	Salmonella_enterica	0.5214	346.754 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGBT010000001.1 Salmonella enterica strain PNUSAS388188 SAMN37649482-rid19577663.denovo.01, whole genome shotgun sequence	381672..382109	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGBT010000035.1 Salmonella enterica strain PNUSAS388188 SAMN37649482-rid19577663.guided.31, whole genome shotgun sequence	1275..1712	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNGBT010000015.1 Salmonella enterica strain PNUSAS388188 SAMN37649482-rid19577663.denovo.15, whole genome shotgun sequence	68656..68797																																																						avrA	ABNGBT010000004.1	184950..185818	99.77	870	0						
GCA_032292905.1_PDT001911983.1_genomic.fna	Salmonella_enterica	0.5193	466.59 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGBW010000001.1 Salmonella enterica strain PNUSAS388181 SAMN37649480-rid19578003.denovo.01, whole genome shotgun sequence	655199..655636	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGBW010000026.1 Salmonella enterica strain PNUSAS388181 SAMN37649480-rid19578003.guided.09, whole genome shotgun sequence	6356..6793	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNGBW010000017.1 Salmonella enterica strain PNUSAS388181 SAMN37649480-rid19578003.denovo.20, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNGBW010000011.1 Salmonella enterica strain PNUSAS388181 SAMN37649480-rid19578003.denovo.13, whole genome shotgun sequence	2465..2998		enterobacteriales	IncX1	98.4	374 / 374	ABNGBW010000014.1 Salmonella enterica strain PNUSAS388181 SAMN37649480-rid19578003.denovo.16, whole genome shotgun sequence	6956..7329																																									avrA	ABNGBW010000007.1	150695..151565	99.196	871	0						
GCA_032292925.1_PDT001911984.1_genomic.fna	Salmonella_enterica	0.5196	466.733 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGBV010000001.1 Salmonella enterica strain PNUSAS388179 SAMN37649477-rid19578013.denovo.01, whole genome shotgun sequence	287377..287814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGBV010000027.1 Salmonella enterica strain PNUSAS388179 SAMN37649477-rid19578013.guided.19, whole genome shotgun sequence	26070..26507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNGBV010000018.1 Salmonella enterica strain PNUSAS388179 SAMN37649477-rid19578013.denovo.21, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNGBV010000013.1 Salmonella enterica strain PNUSAS388179 SAMN37649477-rid19578013.denovo.14, whole genome shotgun sequence	2465..2998		enterobacteriales	IncX1	98.4	374 / 374	ABNGBV010000016.1 Salmonella enterica strain PNUSAS388179 SAMN37649477-rid19578013.denovo.17, whole genome shotgun sequence	6956..7329																																									avrA	ABNGBV010000009.1	150695..151565	99.196	871	0						
GCA_032292945.1_PDT001911982.1_genomic.fna	Salmonella_enterica	0.5197	466.52 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGBY010000001.1 Salmonella enterica strain PNUSAS388178 SAMN37649479-rid19577653.denovo.01, whole genome shotgun sequence	287482..287919	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGBY010000025.1 Salmonella enterica strain PNUSAS388178 SAMN37649479-rid19577653.guided.18, whole genome shotgun sequence	10834..11271	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNGBY010000019.1 Salmonella enterica strain PNUSAS388178 SAMN37649479-rid19577653.denovo.22, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNGBY010000012.1 Salmonella enterica strain PNUSAS388178 SAMN37649479-rid19577653.denovo.13, whole genome shotgun sequence	6118..6651		enterobacteriales	IncX1	98.4	374 / 374	ABNGBY010000015.1 Salmonella enterica strain PNUSAS388178 SAMN37649479-rid19577653.denovo.16, whole genome shotgun sequence	6956..7329																																									avrA	ABNGBY010000008.1	150695..151565	99.196	871	0						
GCA_032292965.1_PDT001911981.1_genomic.fna	Salmonella_enterica	0.5205	402.218 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGBX010000001.1 Salmonella enterica strain PNUSAS388176 SAMN37649484-rid19577643.denovo.01, whole genome shotgun sequence	643166..643603	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGBX010000018.1 Salmonella enterica strain PNUSAS388176 SAMN37649484-rid19577643.guided.10, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032292975.1_PDT001911978.1_genomic.fna	Salmonella_enterica	0.5216	390.41 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNGCB010000001.1 Salmonella enterica strain PNUSAS388182 SAMN37649476-rid19577983.denovo.01, whole genome shotgun sequence	392062..392499	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNGCB010000029.1 Salmonella enterica strain PNUSAS388182 SAMN37649476-rid19577983.guided.12, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNGCB010000019.1 Salmonella enterica strain PNUSAS388182 SAMN37649476-rid19577983.denovo.22, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNGCB010000021.1 Salmonella enterica strain PNUSAS388182 SAMN37649476-rid19577983.denovo.24, whole genome shotgun sequence	2528..2639																																																avrA	ABNGCB010000008.1	174277..175145	99.425	870	0						
GCA_032293005.1_PDT001911977.1_genomic.fna	Salmonella_enterica	0.5192	442.993 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGCC010000001.1 Salmonella enterica strain PNUSAS388180 SAMN37649481-rid19577973.denovo.01, whole genome shotgun sequence	477150..477587	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGCC010000028.1 Salmonella enterica strain PNUSAS388180 SAMN37649481-rid19577973.guided.12, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNGCC010000021.1 Salmonella enterica strain PNUSAS388180 SAMN37649481-rid19577973.denovo.24, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNGCC010000014.1 Salmonella enterica strain PNUSAS388180 SAMN37649481-rid19577973.denovo.16, whole genome shotgun sequence	2465..2998		enterobacteriales	IncX1	98.4	374 / 374	ABNGCC010000017.1 Salmonella enterica strain PNUSAS388180 SAMN37649481-rid19577973.denovo.19, whole genome shotgun sequence	6956..7329																																									avrA	ABNGCC010000009.1	150695..151565	99.196	871	0						
GCA_032293025.1_PDT001911980.1_genomic.fna	Salmonella_enterica	0.5202	279.77 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA1,aadA2,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,sul2,tet(M),tet(B),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGBZ010000001.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNGBZ010000029.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.32, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNGBZ010000029.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.32, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNGBZ010000041.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.46, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGBZ010000041.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.46, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNGBZ010000055.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.guided.12, whole genome shotgun sequence	34030..34467	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNGBZ010000059.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.guided.45, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABNGBZ010000060.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.guided.47, whole genome shotgun sequence	1391..2182	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	837/837	ABNGBZ010000063.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.guided.57, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGBZ010000063.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.guided.57, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNGBZ010000047.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.55, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNGBZ010000064.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.guided.58, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABNGBZ010000029.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.32, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNGBZ010000029.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.32, whole genome shotgun sequence	17356..18569	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABNGBZ010000059.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.guided.45, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNGBZ010000060.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.guided.47, whole genome shotgun sequence	2444..3703	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNGBZ010000062.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.guided.53, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNGBZ010000041.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.46, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNGBZ010000065.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.guided.61, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNGBZ010000066.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.guided.62, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNGBZ010000067.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.guided.63, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNGBZ010000068.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.guided.64, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(M)	96.15	1920/1920	ABNGBZ010000029.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.32, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNGBZ010000030.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNGBZ010000058.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.guided.36, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNGBZ010000061.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.guided.52, whole genome shotgun sequence	873..2792	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABNGBZ010000029.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.32, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABNGBZ010000060.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.guided.47, whole genome shotgun sequence	486..983	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																								enterobacteriales	Col156	94.81	154 / 154	ABNGBZ010000036.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.40, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABNGBZ010000045.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.51, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABNGBZ010000048.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.56, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNGBZ010000040.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.44, whole genome shotgun sequence	2267..2948		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNGBZ010000022.1 Salmonella enterica strain PNUSAS388183 SAMN37649478-rid19577633.denovo.23, whole genome shotgun sequence	55745..56241																											avrA	ABNGBZ010000002.1	507790..508659	99.885	870	0						
GCA_032293045.1_PDT001911979.1_genomic.fna	Salmonella_enterica	0.5209	421.648 KB	4	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNGCA010000001.1 Salmonella enterica strain PNUSAS388177 SAMN37649485-rid19577993.denovo.01, whole genome shotgun sequence	346928..347365	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNGCA010000030.1 Salmonella enterica strain PNUSAS388177 SAMN37649485-rid19577993.guided.13, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGCA010000007.1	151002..151871	99.54	870	0						
GCA_032293065.1_PDT001911975.1_genomic.fna	Salmonella_enterica	0.5217	90.192 KB	19	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGCE010000005.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325458 SAMN37649472-rid19576643.denovo.005, whole genome shotgun sequence	15444..15881	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGCE010000069.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325458 SAMN37649472-rid19576643.denovo.071, whole genome shotgun sequence	4188..5024	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGCE010000069.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325458 SAMN37649472-rid19576643.denovo.071, whole genome shotgun sequence	5024..5827	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNGCE010000101.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325458 SAMN37649472-rid19576643.guided.065, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGCE010000102.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325458 SAMN37649472-rid19576643.guided.073, whole genome shotgun sequence	7032..7868	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGCE010000102.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325458 SAMN37649472-rid19576643.guided.073, whole genome shotgun sequence	6229..7032	Streptomycin	AF321551	floR	98.19	1214/1215	ABNGCE010000077.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325458 SAMN37649472-rid19576643.denovo.082, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNGCE010000104.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325458 SAMN37649472-rid19576643.guided.081, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNGCE010000069.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325458 SAMN37649472-rid19576643.denovo.071, whole genome shotgun sequence	5888..6703	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNGCE010000102.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325458 SAMN37649472-rid19576643.guided.073, whole genome shotgun sequence	5353..6168	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNGCE010000069.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325458 SAMN37649472-rid19576643.denovo.071, whole genome shotgun sequence	1653..2927	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNGCE010000102.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325458 SAMN37649472-rid19576643.guided.073, whole genome shotgun sequence	9129..10403	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNGCE010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325458 SAMN37649472-rid19576643.denovo.045, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNGCE010000054.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325458 SAMN37649472-rid19576643.denovo.055, whole genome shotgun sequence	4937..5196		enterobacteriales	IncX1	98.66	374 / 374	ABNGCE010000062.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325458 SAMN37649472-rid19576643.denovo.063, whole genome shotgun sequence	18564..18937																																									avrA	ABNGCE010000001.1	174682..175550	99.54	870	0						
GCA_032293085.1_PDT001911976.1_genomic.fna	Salmonella_enterica	0.5216	113.534 KB	13	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNGCD010000001.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325460 SAMN37649474-rid19577623.denovo.01, whole genome shotgun sequence	377019..377456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNGCD010000085.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325460 SAMN37649474-rid19577623.guided.40, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNGCD010000068.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325460 SAMN37649474-rid19577623.denovo.71, whole genome shotgun sequence	239..369																																																						avrA	ABNGCD010000006.1	148617..149486	99.425	870	0						
GCA_032293105.1_PDT001911974.1_genomic.fna	Salmonella_enterica	0.5211	107.674 KB	14	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGCG010000002.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.denovo.02, whole genome shotgun sequence	175773..176210	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGCG010000043.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.denovo.44, whole genome shotgun sequence	8324..9160	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGCG010000043.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.denovo.44, whole genome shotgun sequence	9160..9963	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNGCG010000088.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.guided.46, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGCG010000088.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.guided.46, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNGCG010000090.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.guided.58, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNGCG010000043.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.denovo.44, whole genome shotgun sequence	39180..40325	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNGCG010000088.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.guided.46, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABNGCG010000043.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.denovo.44, whole genome shotgun sequence	3975..5188	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNGCG010000091.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.guided.69, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNGCG010000043.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.denovo.44, whole genome shotgun sequence	10024..10839	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNGCG010000088.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.guided.46, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNGCG010000043.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.denovo.44, whole genome shotgun sequence	5789..7063	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNGCG010000088.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.guided.46, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNGCG010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.denovo.45, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNGCG010000048.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.denovo.50, whole genome shotgun sequence	5446..5705		enterobacteriales	IncX1	98.66	374 / 374	ABNGCG010000075.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325459 SAMN37649473-rid19577613.denovo.80, whole genome shotgun sequence	662..1035																																									avrA	ABNGCG010000006.1	173398..174266	99.54	870	0						
GCA_032293125.1_PDT001911972.1_genomic.fna	Salmonella_enterica	0.5219	163.546 KB	10	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	9,46:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9,46	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Waedenswil		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNGCH010000001.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325455 SAMN37649462-rid19577593.denovo.01, whole genome shotgun sequence	52406..52843	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNGCH010000066.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325455 SAMN37649462-rid19577593.guided.43, whole genome shotgun sequence	8806..9243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032293145.1_PDT001911973.1_genomic.fna	Salmonella_enterica	0.5219	71.195 KB	23	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGCF010000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325454 SAMN37649461-rid19577603.denovo.009, whole genome shotgun sequence	15511..15948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGCF010000133.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325454 SAMN37649461-rid19577603.guided.062, whole genome shotgun sequence	25007..25444	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNGCF010000103.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325454 SAMN37649461-rid19577603.denovo.106, whole genome shotgun sequence	3229..3380																																																						avrA	ABNGCF010000008.1	99926..100794	99.77	870	0						
GCA_032293165.1_PDT001911971.1_genomic.fna	Salmonella_enterica	0.5218	89.094 KB	19	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGCI010000002.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325457 SAMN37649459-rid19577583.denovo.002, whole genome shotgun sequence	83480..83917	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGCI010000058.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325457 SAMN37649459-rid19577583.denovo.059, whole genome shotgun sequence	6785..7621	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGCI010000058.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325457 SAMN37649459-rid19577583.denovo.059, whole genome shotgun sequence	7621..8424	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNGCI010000124.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325457 SAMN37649459-rid19577583.guided.086, whole genome shotgun sequence	2120..2956	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGCI010000124.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325457 SAMN37649459-rid19577583.guided.086, whole genome shotgun sequence	1317..2120	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNGCI010000125.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325457 SAMN37649459-rid19577583.guided.087, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	ABNGCI010000058.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325457 SAMN37649459-rid19577583.denovo.059, whole genome shotgun sequence	2436..3649	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNGCI010000126.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325457 SAMN37649459-rid19577583.guided.092, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNGCI010000058.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325457 SAMN37649459-rid19577583.denovo.059, whole genome shotgun sequence	8485..9300	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNGCI010000124.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325457 SAMN37649459-rid19577583.guided.086, whole genome shotgun sequence	441..1256	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNGCI010000058.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325457 SAMN37649459-rid19577583.denovo.059, whole genome shotgun sequence	4250..5524	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNGCI010000124.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325457 SAMN37649459-rid19577583.guided.086, whole genome shotgun sequence	4217..5491	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNGCI010000051.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325457 SAMN37649459-rid19577583.denovo.052, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNGCI010000061.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325457 SAMN37649459-rid19577583.denovo.062, whole genome shotgun sequence	5487..5746		enterobacteriales	IncX1	98.66	374 / 374	ABNGCI010000097.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325457 SAMN37649459-rid19577583.denovo.102, whole genome shotgun sequence	1273..1646																																									avrA	ABNGCI010000009.1	39484..40352	99.54	870	0						
GCA_032293185.1_PDT001911970.1_genomic.fna	Salmonella_enterica	0.5226	77.217 KB	20	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNGCK010000056.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325456 SAMN37649458-rid19577573.denovo.056, whole genome shotgun sequence	12513..12950	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNGCK010000124.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325456 SAMN37649458-rid19577573.guided.069, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032293205.1_PDT001911969.1_genomic.fna	Salmonella_enterica	0.5211	107.224 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGCJ010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325453 SAMN37649460-rid19577563.denovo.01, whole genome shotgun sequence	145447..145884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGCJ010000083.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325453 SAMN37649460-rid19577563.guided.42, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNGCJ010000061.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325453 SAMN37649460-rid19577563.denovo.64, whole genome shotgun sequence	3229..3380																																																						avrA	ABNGCJ010000004.1	122784..123652	99.77	870	0						
GCA_032293225.1_PDT001911966.1_genomic.fna	Salmonella_enterica	0.5213	92.525 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGCO010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325451 SAMN37649456-rid19577533.denovo.02, whole genome shotgun sequence	20853..21290	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGCO010000091.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325451 SAMN37649456-rid19577533.guided.29, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNGCO010000069.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325451 SAMN37649456-rid19577533.denovo.72, whole genome shotgun sequence	3229..3380																																																						avrA	ABNGCO010000005.1	123381..124249	99.77	870	0						
GCA_032293245.1_PDT001911967.1_genomic.fna	Salmonella_enterica	0.5215	89.199 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGCM010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325449 SAMN37649454-rid19577543.denovo.001, whole genome shotgun sequence	145281..145718	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGCM010000110.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325449 SAMN37649454-rid19577543.guided.067, whole genome shotgun sequence	2443..2880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNGCM010000080.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325449 SAMN37649454-rid19577543.denovo.083, whole genome shotgun sequence	3229..3380																																																						avrA	ABNGCM010000006.1	105554..106422	99.77	870	0						
GCA_032293265.1_PDT001911968.1_genomic.fna	Salmonella_enterica	0.5212	136.459 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGCL010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325452 SAMN37649457-rid19577553.denovo.01, whole genome shotgun sequence	145453..145890	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGCL010000077.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325452 SAMN37649457-rid19577553.guided.49, whole genome shotgun sequence	20567..21004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNGCL010000061.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325452 SAMN37649457-rid19577553.denovo.64, whole genome shotgun sequence	3229..3380																																																						avrA	ABNGCL010000005.1	107991..108859	99.77	870	0						
GCA_032293285.1_PDT001911965.1_genomic.fna	Salmonella_enterica	0.5224	47.26 KB	35	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGCN010000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325450 SAMN37649455-rid19576633.denovo.015, whole genome shotgun sequence	52520..52957	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGCN010000197.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325450 SAMN37649455-rid19576633.guided.097, whole genome shotgun sequence	15483..15920	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNGCN010000144.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325450 SAMN37649455-rid19576633.denovo.147, whole genome shotgun sequence	3229..3380																																																						avrA	ABNGCN010000007.1	43884..44752	99.77	870	0						
GCA_032293505.1_PDT001911952.1_genomic.fna	Salmonella_enterica	0.5217	441.159 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGDA010000001.1 Salmonella enterica strain PNUSAS388134 SAMN37649354-rid19577423.denovo.01, whole genome shotgun sequence	566483..566920	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNGDA010000033.1 Salmonella enterica strain PNUSAS388134 SAMN37649354-rid19577423.guided.14, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGDA010000003.1	401352..402221	99.655	870	0						
GCA_032293525.1_PDT001911951.1_genomic.fna	Salmonella_enterica	0.5217	263.213 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGDB010000001.1 Salmonella enterica strain PNUSAS388147 SAMN37649349-rid19577413.denovo.01, whole genome shotgun sequence	622169..622606	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGDB010000031.1 Salmonella enterica strain PNUSAS388147 SAMN37649349-rid19577413.guided.14, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGDB010000011.1	94819..95688	99.655	870	0						
GCA_032293545.1_PDT001911950.1_genomic.fna	Salmonella_enterica	0.5209	186.592 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGDD010000001.1 Salmonella enterica strain PNUSAS388138 SAMN37649364-rid19576603.denovo.01, whole genome shotgun sequence	368585..369022	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGDD010000057.1 Salmonella enterica strain PNUSAS388138 SAMN37649364-rid19576603.guided.33, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNGDD010000017.1 Salmonella enterica strain PNUSAS388138 SAMN37649364-rid19576603.denovo.17, whole genome shotgun sequence	108772..109414																																																																	
GCA_032293605.1_PDT001911947.1_genomic.fna	Salmonella_enterica	0.5197	696.88 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGDF010000001.1 Salmonella enterica strain PNUSAS388143 SAMN37649356-rid19577383.denovo.01, whole genome shotgun sequence	1236262..1236699	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGDF010000016.1 Salmonella enterica strain PNUSAS388143 SAMN37649356-rid19577383.guided.06, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGDF010000003.1	556208..557076	99.425	870	0						
GCA_032293645.1_PDT001911948.1_genomic.fna	Salmonella_enterica	0.5208	394.274 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGDE010000001.1 Salmonella enterica strain PNUSAS388131 SAMN37649362-rid19577393.denovo.01, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGDE010000029.1 Salmonella enterica strain PNUSAS388131 SAMN37649362-rid19577393.guided.13, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNGDE010000014.1 Salmonella enterica strain PNUSAS388131 SAMN37649362-rid19577393.denovo.16, whole genome shotgun sequence	34958..35491																																																						avrA	ABNGDE010000003.1	394780..395648	99.425	870	0						
GCA_032293665.1_PDT001911945.1_genomic.fna	Salmonella_enterica	0.5216	341.902 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGDH010000004.1 Salmonella enterica strain PNUSAS388145 SAMN37649357-rid19577363.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGDH010000043.1 Salmonella enterica strain PNUSAS388145 SAMN37649357-rid19577363.guided.20, whole genome shotgun sequence	31948..32385	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNGDH010000014.1 Salmonella enterica strain PNUSAS388145 SAMN37649357-rid19577363.denovo.14, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNGDH010000014.1 Salmonella enterica strain PNUSAS388145 SAMN37649357-rid19577363.denovo.14, whole genome shotgun sequence	30406..30667																																																avrA	ABNGDH010000003.1	401466..402334	100	869	0						
GCA_032293685.1_PDT001911943.1_genomic.fna	Salmonella_enterica	0.521	333.002 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGDK010000001.1 Salmonella enterica strain PNUSAS388153 SAMN37649365-rid19577343.denovo.01, whole genome shotgun sequence	228889..229326	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGDK010000030.1 Salmonella enterica strain PNUSAS388153 SAMN37649365-rid19577343.guided.14, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGDK010000003.1	149551..150420	99.655	870	0						
GCA_032293705.1_PDT001911944.1_genomic.fna	Salmonella_enterica	0.5221	439.601 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGDI010000001.1 Salmonella enterica strain PNUSAS388133 SAMN37649363-rid19577353.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGDI010000028.1 Salmonella enterica strain PNUSAS388133 SAMN37649363-rid19577353.guided.12, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGDI010000003.1	95044..95913	99.655	870	0						
GCA_032293725.1_PDT001911946.1_genomic.fna	Salmonella_enterica	0.5217	727.607 KB	2	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNGDG010000001.1 Salmonella enterica strain PNUSAS388135 SAMN37649350-rid19577373.denovo.01, whole genome shotgun sequence	1377045..1377482	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNGDG010000019.1 Salmonella enterica strain PNUSAS388135 SAMN37649350-rid19577373.guided.11, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGDG010000002.1	545002..545870	99.655	869	0						
GCA_032293745.1_PDT001911940.1_genomic.fna	Salmonella_enterica	0.5216	394.273 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGDL010000002.1 Salmonella enterica strain PNUSAS388150 SAMN37649360-rid19576593.denovo.02, whole genome shotgun sequence	297244..297681	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGDL010000042.1 Salmonella enterica strain PNUSAS388150 SAMN37649360-rid19576593.guided.12, whole genome shotgun sequence	35394..35831	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABNGDL010000014.1 Salmonella enterica strain PNUSAS388150 SAMN37649360-rid19576593.denovo.15, whole genome shotgun sequence	51927..52188																																																						avrA	ABNGDL010000003.1	394843..395711	99.425	870	0						
GCA_032293755.1_PDT001911941.1_genomic.fna	Salmonella_enterica	0.5217	264.985 KB	7	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNGDM010000002.1 Salmonella enterica strain PNUSAS388141 SAMN37649351-rid19577323.denovo.02, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNGDM010000036.1 Salmonella enterica strain PNUSAS388141 SAMN37649351-rid19577323.guided.17, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGDM010000007.1	98447..99316	99.77	870	0						
GCA_032293775.1_PDT001911942.1_genomic.fna	Salmonella_enterica	0.5207	183.7 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNGDJ010000012.1 Salmonella enterica strain PNUSAS388137 SAMN37649353-rid19577333.denovo.12, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNGDJ010000058.1 Salmonella enterica strain PNUSAS388137 SAMN37649353-rid19577333.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032293805.1_PDT001911939.1_genomic.fna	Salmonella_enterica	0.5202	462.526 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(p14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGDN010000002.1 Salmonella enterica strain PNUSAS388142 SAMN37649358-rid19577313.denovo.02, whole genome shotgun sequence	136646..137083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGDN010000022.1 Salmonella enterica strain PNUSAS388142 SAMN37649358-rid19577313.guided.09, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNGDN010000013.1 Salmonella enterica strain PNUSAS388142 SAMN37649358-rid19577313.denovo.15, whole genome shotgun sequence	17040..17682	enterobacteriales	IncFII(p14)	92.02	263 / 262	ABNGDN010000013.1 Salmonella enterica strain PNUSAS388142 SAMN37649358-rid19577313.denovo.15, whole genome shotgun sequence	33599..33857																																																avrA	ABNGDN010000003.1	498620..499488	99.425	870	0						
GCA_032293825.1_PDT001911938.1_genomic.fna	Salmonella_enterica	0.5216	393.478 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGDO010000001.1 Salmonella enterica strain PNUSAS388146 SAMN37649367-rid19577303.denovo.01, whole genome shotgun sequence	169873..170310	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGDO010000037.1 Salmonella enterica strain PNUSAS388146 SAMN37649367-rid19577303.guided.19, whole genome shotgun sequence	16444..16881	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032293845.1_PDT001911936.1_genomic.fna	Salmonella_enterica	0.5214	366.642 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGDP010000001.1 Salmonella enterica strain PNUSAS388149 SAMN37649366-rid19577283.denovo.01, whole genome shotgun sequence	681210..681647	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGDP010000028.1 Salmonella enterica strain PNUSAS388149 SAMN37649366-rid19577283.guided.10, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGDP010000011.1	95049..95919	99.196	871	0						
GCA_032293865.1_PDT001911937.1_genomic.fna	Salmonella_enterica	0.5208	237.96 KB	9	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGDQ010000010.1 Salmonella enterica strain PNUSAS388144 SAMN37649355-rid19577293.denovo.10, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGDQ010000052.1 Salmonella enterica strain PNUSAS388144 SAMN37649355-rid19577293.guided.27, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGDQ010000012.1	125494..126362	99.31	870	0						
GCA_032293885.1_PDT001911934.1_genomic.fna	Salmonella_enterica	0.5209	283.016 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGDS010000001.1 Salmonella enterica strain PNUSAS388152 SAMN37649352-rid19577273.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGDS010000030.1 Salmonella enterica strain PNUSAS388152 SAMN37649352-rid19577273.guided.19, whole genome shotgun sequence	18822..19259	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGDS010000017.1 Salmonella enterica strain PNUSAS388152 SAMN37649352-rid19577273.denovo.18, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNGDS010000017.1 Salmonella enterica strain PNUSAS388152 SAMN37649352-rid19577273.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABNGDS010000002.1	553301..554170	99.54	870	0						
GCA_032293905.1_PDT001911933.1_genomic.fna	Salmonella_enterica	0.5213	391.761 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGDT010000001.1 Salmonella enterica strain PNUSAS388151 SAMN37649345-rid19577263.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGDT010000032.1 Salmonella enterica strain PNUSAS388151 SAMN37649345-rid19577263.guided.16, whole genome shotgun sequence	16450..16887	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGDT010000003.1	256193..257062	99.31	870	0						
GCA_032293925.1_PDT001911932.1_genomic.fna	Salmonella_enterica	0.5186	642.896 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGDU010000001.1 Salmonella enterica strain PNUSAS388136 SAMN37649347-rid19577253.denovo.01, whole genome shotgun sequence	263560..263997	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNGDU010000020.1 Salmonella enterica strain PNUSAS388136 SAMN37649347-rid19577253.guided.11, whole genome shotgun sequence	42442..42879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2	99.38	324 / 324	ABNGDU010000012.1 Salmonella enterica strain PNUSAS388136 SAMN37649347-rid19577253.denovo.14, whole genome shotgun sequence	31938..32261																																																						avrA	ABNGDU010000003.1	547419..548289	99.656	871	0						
GCA_032293945.1_PDT001911931.1_genomic.fna	Salmonella_enterica	0.5205	199.241 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-IIa,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-IIa,aph(3')-IIa,blaTEM-1B,blaTEM-1B,floR,floR,qnrB19,qnrB19,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),Col(pHAD28),IncC,IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGDV010000001.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.denovo.01, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGDV010000030.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.denovo.32, whole genome shotgun sequence	21486..22322	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGDV010000030.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.denovo.32, whole genome shotgun sequence	20683..21486	Streptomycin	AF321551	aph(3')-IIa	100	795/795	ABNGDV010000037.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.denovo.40, whole genome shotgun sequence	11910..12704	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	aac(6')-Iaa	100	438/438	ABNGDV010000064.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.guided.14, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGDV010000066.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.guided.37, whole genome shotgun sequence	21527..22363	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGDV010000066.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.guided.37, whole genome shotgun sequence	20724..21527	Streptomycin	AF321551	aph(3')-IIa	100	795/795	ABNGDV010000069.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.guided.48, whole genome shotgun sequence	3346..4140	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	aph(3')-IIa	100	795/795	ABNGDV010000070.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.guided.49, whole genome shotgun sequence	3346..4140	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	blaTEM-1B	100	861/861	ABNGDV010000037.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.denovo.40, whole genome shotgun sequence	2884..3744	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNGDV010000068.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.guided.45, whole genome shotgun sequence	4837..5697	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNGDV010000030.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.denovo.32, whole genome shotgun sequence	25458..26671	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNGDV010000071.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.guided.54, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNGDV010000050.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.denovo.58, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNGDV010000073.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.guided.60, whole genome shotgun sequence	513..1157	Ciprofloxacin	EU432277	sul2	100	816/816	ABNGDV010000030.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.denovo.32, whole genome shotgun sequence	19807..20622	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNGDV010000066.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.guided.37, whole genome shotgun sequence	19848..20663	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNGDV010000030.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.denovo.32, whole genome shotgun sequence	23583..24857	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNGDV010000072.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.guided.59, whole genome shotgun sequence	1212..2486	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																							enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNGDV010000047.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.denovo.55, whole genome shotgun sequence	557..687	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNGDV010000050.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.denovo.58, whole genome shotgun sequence	1150..1280		enterobacteriales	IncC	100	417 / 417	ABNGDV010000033.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.denovo.35, whole genome shotgun sequence	5019..5435		enterobacteriales	IncFII(S)	100	262 / 262	ABNGDV010000019.1 Salmonella enterica strain PNUSAS388129 SAMN37649348-rid19577243.denovo.20, whole genome shotgun sequence	1966..2227																																		avrA	ABNGDV010000012.1	173874..174743	99.885	870	0						
GCA_032293965.1_PDT001911930.1_genomic.fna	Salmonella_enterica	0.5211	367.583 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGDW010000001.1 Salmonella enterica strain PNUSAS388130 SAMN37649346-rid19576573.denovo.01, whole genome shotgun sequence	788450..788887	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGDW010000023.1 Salmonella enterica strain PNUSAS388130 SAMN37649346-rid19576573.guided.12, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGDW010000009.1	173377..174245	99.195	870	0						
GCA_032293985.1_PDT001911935.1_genomic.fna	Salmonella_enterica	0.5222	829.792 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGDR010000001.1 Salmonella enterica strain PNUSAS388140 SAMN37649361-rid19576583.denovo.01, whole genome shotgun sequence	681247..681684	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNGDR010000015.1 Salmonella enterica strain PNUSAS388140 SAMN37649361-rid19576583.guided.08, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGDR010000002.1	655336..656204	99.655	870	0						
GCA_032294005.1_PDT001911929.1_genomic.fna	Salmonella_enterica	0.5204	302.487 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGDX010000001.1 Salmonella enterica strain PNUSAS388148 SAMN37649344-rid19577233.denovo.01, whole genome shotgun sequence	521550..521987	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGDX010000031.1 Salmonella enterica strain PNUSAS388148 SAMN37649344-rid19577233.guided.14, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	97.83	322 / 316	ABNGDX010000021.1 Salmonella enterica strain PNUSAS388148 SAMN37649344-rid19577233.denovo.23, whole genome shotgun sequence	28782..29103																																																						avrA	ABNGDX010000014.1	95049..95918	99.195	870	0						
GCA_032294025.1_PDT001911927.1_genomic.fna	Salmonella_enterica	0.521	439.828 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGEA010000001.1 Salmonella enterica strain PNUSAS388139 SAMN37648686-rid19577213.denovo.01, whole genome shotgun sequence	202285..202722	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNGEA010000054.1 Salmonella enterica strain PNUSAS388139 SAMN37648686-rid19577213.guided.12, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNGEA010000011.1 Salmonella enterica strain PNUSAS388139 SAMN37648686-rid19577213.denovo.11, whole genome shotgun sequence	42711..43353	enterobacteriales	IncFII(Yp)	96.52	230 / 230	ABNGEA010000011.1 Salmonella enterica strain PNUSAS388139 SAMN37648686-rid19577213.denovo.11, whole genome shotgun sequence	100779..101007																																																avrA	ABNGEA010000003.1	401454..402323	99.77	870	0						
GCA_032294045.1_PDT001911926.1_genomic.fna	Salmonella_enterica	0.52	718.902 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGDZ010000001.1 Salmonella enterica strain PNUSAS388128 SAMN37648685-rid19577203.denovo.01, whole genome shotgun sequence	643300..643737	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGDZ010000021.1 Salmonella enterica strain PNUSAS388128 SAMN37648685-rid19577203.guided.12, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNGDZ010000012.1 Salmonella enterica strain PNUSAS388128 SAMN37648685-rid19577203.denovo.13, whole genome shotgun sequence	15839..15980																																																						avrA	ABNGDZ010000003.1	544953..545821	99.425	870	0						
GCA_032294065.1_PDT001911925.1_genomic.fna	Salmonella_enterica	0.5233	244.379 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGEC010000001.1 Salmonella enterica strain PNUSAS388052 SAMN37648384-rid19577193.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGEC010000037.1 Salmonella enterica strain PNUSAS388052 SAMN37648384-rid19577193.guided.27, whole genome shotgun sequence	2975..3412	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGEC010000003.1	149924..150793	99.655	870	0						
GCA_032294105.1_PDT001911928.1_genomic.fna	Salmonella_enterica	0.5204	369.886 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGDY010000001.1 Salmonella enterica strain PNUSAS388132 SAMN37648684-rid19577223.denovo.01, whole genome shotgun sequence	606007..606444	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGDY010000031.1 Salmonella enterica strain PNUSAS388132 SAMN37648684-rid19577223.guided.15, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGDY010000010.1	140191..141059	99.195	870	0						
GCA_032294165.1_PDT001911921.1_genomic.fna	Salmonella_enterica	0.5212	335.214 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNGEF010000001.1 Salmonella enterica strain PNUSAS388025 SAMN37646125-rid19577153.denovo.01, whole genome shotgun sequence	477714..478151	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNGEF010000035.1 Salmonella enterica strain PNUSAS388025 SAMN37646125-rid19577153.guided.19, whole genome shotgun sequence	15901..16338	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGEF010000006.1	144913..145782	99.31	870	0						
GCA_032294185.1_PDT001911920.1_genomic.fna	Salmonella_enterica	0.5202	406.164 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGEG010000001.1 Salmonella enterica strain PNUSAS388023 SAMN37646130-rid19576563.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGEG010000025.1 Salmonella enterica strain PNUSAS388023 SAMN37646130-rid19576563.guided.16, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABNGEG010000015.1 Salmonella enterica strain PNUSAS388023 SAMN37646130-rid19576563.denovo.17, whole genome shotgun sequence	32011..32384																																																						avrA	ABNGEG010000008.1	175109..175978	99.54	870	0						
GCA_032294205.1_PDT001911919.1_genomic.fna	Salmonella_enterica	0.5209	489.993 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pXuzhou21	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGEH010000001.1 Salmonella enterica strain PNUSAS388054 SAMN37648391-rid19577143.denovo.01, whole genome shotgun sequence	510590..511027	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGEH010000026.1 Salmonella enterica strain PNUSAS388054 SAMN37648391-rid19577143.guided.21, whole genome shotgun sequence	7746..8183	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pXuzhou21	99.86	720 / 720	ABNGEH010000016.1 Salmonella enterica strain PNUSAS388054 SAMN37648391-rid19577143.denovo.16, whole genome shotgun sequence	23692..24411																																																						avrA	ABNGEH010000002.1	544607..545475	99.425	870	0						
GCA_032294225.1_PDT001911918.1_genomic.fna	Salmonella_enterica	0.5208	447.856 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGEI010000001.1 Salmonella enterica strain PNUSAS388050 SAMN37648394-rid19577133.denovo.01, whole genome shotgun sequence	532049..532486	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGEI010000041.1 Salmonella enterica strain PNUSAS388050 SAMN37648394-rid19577133.guided.28, whole genome shotgun sequence	2547..2984	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGEI010000002.1	544468..545336	99.425	870	0						
GCA_032294245.1_PDT001911917.1_genomic.fna	Salmonella_enterica	0.5214	243.251 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGEL010000001.1 Salmonella enterica strain PNUSAS388066 SAMN37648388-rid19577123.denovo.01, whole genome shotgun sequence	200043..200480	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGEL010000040.1 Salmonella enterica strain PNUSAS388066 SAMN37648388-rid19577123.guided.35, whole genome shotgun sequence	2913..3350	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGEL010000029.1 Salmonella enterica strain PNUSAS388066 SAMN37648388-rid19577123.denovo.29, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNGEL010000032.1 Salmonella enterica strain PNUSAS388066 SAMN37648388-rid19577123.denovo.32, whole genome shotgun sequence	3402..3663																																																avrA	ABNGEL010000007.1	174837..175706	99.54	870	0						
GCA_032294285.1_PDT001911913.1_genomic.fna	Salmonella_enterica	0.5215	388.63 KB	5	aroC_17,dnaN_15,hemD_8,hisD_128,purE_71,sucA_185,thrA_419	1992	1,3,19:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_15	hemD	100	100	hemD_8	hisD	100	100	hisD_128	purE	100	100	purE_71	sucA	100	100	sucA_185	thrA	100	100	thrA_419	1,3,19	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Carno		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNGEM010000003.1 Salmonella enterica strain PNUSAS388127 SAMN37648639-rid19577083.denovo.03, whole genome shotgun sequence	398390..398827	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNGEM010000040.1 Salmonella enterica strain PNUSAS388127 SAMN37648639-rid19577083.guided.25, whole genome shotgun sequence	7753..8190	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032294385.1_PDT001911909.1_genomic.fna	Salmonella_enterica	0.5214	400.828 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGER010000001.1 Salmonella enterica strain PNUSAS388051 SAMN37648386-rid19577053.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGER010000027.1 Salmonella enterica strain PNUSAS388051 SAMN37648386-rid19577053.guided.22, whole genome shotgun sequence	789..1226	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGER010000019.1 Salmonella enterica strain PNUSAS388051 SAMN37648386-rid19577053.denovo.19, whole genome shotgun sequence	6828..7470	enterobacteriales	IncFII(S)	100	262 / 262	ABNGER010000020.1 Salmonella enterica strain PNUSAS388051 SAMN37648386-rid19577053.denovo.21, whole genome shotgun sequence	3402..3663																																																avrA	ABNGER010000002.1	553636..554505	99.54	870	0						
GCA_032294425.1_PDT001911908.1_genomic.fna	Salmonella_enterica	0.5223	486.011 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGES010000001.1 Salmonella enterica strain PNUSAS388065 SAMN37648390-rid19577043.denovo.01, whole genome shotgun sequence	481927..482364	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNGES010000029.1 Salmonella enterica strain PNUSAS388065 SAMN37648390-rid19577043.guided.20, whole genome shotgun sequence	5015..5452	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGES010000012.1	39483..40352	99.655	870	0						
GCA_032294445.1_PDT001911910.1_genomic.fna	Salmonella_enterica	0.5201	400.257 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(AP001918),IncFII(pCoo)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGEQ010000001.1 Salmonella enterica strain PNUSAS388059 SAMN37648393-rid19576553.denovo.01, whole genome shotgun sequence	510589..511026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGEQ010000030.1 Salmonella enterica strain PNUSAS388059 SAMN37648393-rid19576553.guided.23, whole genome shotgun sequence	6016..6453	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	99.56	682 / 682	ABNGEQ010000015.1 Salmonella enterica strain PNUSAS388059 SAMN37648393-rid19576553.denovo.15, whole genome shotgun sequence	73999..74680	enterobacteriales	IncFII(pCoo)	96.18	262 / 262	ABNGEQ010000015.1 Salmonella enterica strain PNUSAS388059 SAMN37648393-rid19576553.denovo.15, whole genome shotgun sequence	16230..16491																																																avrA	ABNGEQ010000002.1	544607..545475	99.425	870	0						
GCA_032294465.1_PDT001911907.1_genomic.fna	Salmonella_enterica	0.5218	682.78 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGET010000001.1 Salmonella enterica strain PNUSAS388063 SAMN37648383-rid19577033.denovo.01, whole genome shotgun sequence	984867..985304	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGET010000032.1 Salmonella enterica strain PNUSAS388063 SAMN37648383-rid19577033.guided.14, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGET010000001.1	544671..545539	99.425	870	0						
GCA_032294485.1_PDT001911904.1_genomic.fna	Salmonella_enterica	0.5214	379.918 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(Yp),IncN2	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNGEW010000002.1 Salmonella enterica strain PNUSAS387015 SAMN37648222-rid19577003.denovo.02, whole genome shotgun sequence	260034..260471	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNGEW010000033.1 Salmonella enterica strain PNUSAS387015 SAMN37648222-rid19577003.guided.24, whole genome shotgun sequence	13401..13838	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNGEW010000015.1 Salmonella enterica strain PNUSAS387015 SAMN37648222-rid19577003.denovo.15, whole genome shotgun sequence	37298..37940	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNGEW010000015.1 Salmonella enterica strain PNUSAS387015 SAMN37648222-rid19577003.denovo.15, whole genome shotgun sequence	10978..11204		enterobacteriales	IncN2	97.9	477 / 477	ABNGEW010000020.1 Salmonella enterica strain PNUSAS387015 SAMN37648222-rid19577003.denovo.20, whole genome shotgun sequence	2688..3164																																																				
GCA_032294505.1_PDT001911906.1_genomic.fna	Salmonella_enterica	0.5219	696.106 KB	2	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNGEU010000001.1 Salmonella enterica strain PNUSAS387020 SAMN37648219-rid19577023.denovo.01, whole genome shotgun sequence	642742..643179	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNGEU010000022.1 Salmonella enterica strain PNUSAS387020 SAMN37648219-rid19577023.guided.16, whole genome shotgun sequence	3194..3631	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGEU010000002.1	150854..151722	99.425	870	0						
GCA_032294525.1_PDT001911905.1_genomic.fna	Salmonella_enterica	0.5206	224.101 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNGEV010000003.1 Salmonella enterica strain PNUSAS388043 SAMN37648367-rid19577013.denovo.03, whole genome shotgun sequence	313235..313672	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNGEV010000046.1 Salmonella enterica strain PNUSAS388043 SAMN37648367-rid19577013.guided.33, whole genome shotgun sequence	9823..10260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNGEV010000025.1 Salmonella enterica strain PNUSAS388043 SAMN37648367-rid19577013.denovo.25, whole genome shotgun sequence	36427..37069	enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNGEV010000021.1 Salmonella enterica strain PNUSAS388043 SAMN37648367-rid19577013.denovo.21, whole genome shotgun sequence	70120..70261																																																											
GCA_032294545.1_PDT001911901.1_genomic.fna	Salmonella_enterica	0.5213	695.517 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGFB010000003.1 Salmonella enterica strain PNUSAS387035 SAMN37648180-rid19576973.denovo.03, whole genome shotgun sequence	407341..407778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGFB010000026.1 Salmonella enterica strain PNUSAS387035 SAMN37648180-rid19576973.guided.19, whole genome shotgun sequence	1473..1910	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGFB010000002.1	609012..609880	99.195	870	0						
GCA_032294565.1_PDT001911903.1_genomic.fna	Salmonella_enterica	0.5211	430.551 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGEZ010000001.1 Salmonella enterica strain PNUSAS388048 SAMN37648392-rid19576993.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGEZ010000047.1 Salmonella enterica strain PNUSAS388048 SAMN37648392-rid19576993.guided.26, whole genome shotgun sequence	3684..4121	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGEZ010000002.1	504152..505022	99.196	871	0						
GCA_032294605.1_PDT001911902.1_genomic.fna	Salmonella_enterica	0.5216	333.002 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGFA010000001.1 Salmonella enterica strain PNUSAS387021 SAMN37648225-rid19576983.denovo.01, whole genome shotgun sequence	573972..574409	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNGFA010000025.1 Salmonella enterica strain PNUSAS387021 SAMN37648225-rid19576983.denovo.25, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGFA010000025.1 Salmonella enterica strain PNUSAS387021 SAMN37648225-rid19576983.denovo.25, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNGFA010000050.1 Salmonella enterica strain PNUSAS387021 SAMN37648225-rid19576983.guided.35, whole genome shotgun sequence	19..456	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNGFA010000052.1 Salmonella enterica strain PNUSAS387021 SAMN37648225-rid19576983.guided.39, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGFA010000052.1 Salmonella enterica strain PNUSAS387021 SAMN37648225-rid19576983.guided.39, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNGFA010000025.1 Salmonella enterica strain PNUSAS387021 SAMN37648225-rid19576983.denovo.25, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNGFA010000052.1 Salmonella enterica strain PNUSAS387021 SAMN37648225-rid19576983.guided.39, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	99.92	1200/1200	ABNGFA010000025.1 Salmonella enterica strain PNUSAS387021 SAMN37648225-rid19576983.denovo.25, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNGFA010000049.1 Salmonella enterica strain PNUSAS387021 SAMN37648225-rid19576983.guided.34, whole genome shotgun sequence	7841..9040	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNGFA010000030.1 Salmonella enterica strain PNUSAS387021 SAMN37648225-rid19576983.denovo.30, whole genome shotgun sequence	9109..9668																																																						avrA	ABNGFA010000002.1	149828..150697	99.655	870	0						
GCA_032294825.1_PDT001911889.1_genomic.fna	Salmonella_enterica	0.5216	347.445 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGFL010000003.1 Salmonella enterica strain PNUSAS388031 SAMN37648373-rid19576873.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGFL010000043.1 Salmonella enterica strain PNUSAS388031 SAMN37648373-rid19576873.guided.28, whole genome shotgun sequence	12427..12864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNGFL010000030.1 Salmonella enterica strain PNUSAS388031 SAMN37648373-rid19576873.denovo.33, whole genome shotgun sequence	816..967	enterobacteriales	IncFIB(S)	100	643 / 643	ABNGFL010000022.1 Salmonella enterica strain PNUSAS388031 SAMN37648373-rid19576873.denovo.22, whole genome shotgun sequence	44728..45370		enterobacteriales	IncFII(S)	100	262 / 262	ABNGFL010000022.1 Salmonella enterica strain PNUSAS388031 SAMN37648373-rid19576873.denovo.22, whole genome shotgun sequence	29382..29643																																									avrA	ABNGFL010000004.1	209211..210079	100	869	0						
GCA_032294845.1_PDT001911888.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGFM010000001.1 Salmonella enterica strain PNUSAS388053 SAMN37648375-rid19576523.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGFM010000026.1 Salmonella enterica strain PNUSAS388053 SAMN37648375-rid19576523.guided.20, whole genome shotgun sequence	8582..9019	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGFM010000017.1 Salmonella enterica strain PNUSAS388053 SAMN37648375-rid19576523.denovo.17, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNGFM010000018.1 Salmonella enterica strain PNUSAS388053 SAMN37648375-rid19576523.denovo.21, whole genome shotgun sequence	3403..3664																																																avrA	ABNGFM010000002.1	553636..554505	99.54	870	0						
GCA_032294865.1_PDT001911887.1_genomic.fna	Salmonella_enterica	0.5215	147.088 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGFN010000001.1 Salmonella enterica strain 23SC09CH01-S1 isolate SALM23-0958 SAMN37648141-rid19576863.denovo.01, whole genome shotgun sequence	134924..135361	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNGFN010000039.1 Salmonella enterica strain 23SC09CH01-S1 isolate SALM23-0958 SAMN37648141-rid19576863.denovo.40, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGFN010000039.1 Salmonella enterica strain 23SC09CH01-S1 isolate SALM23-0958 SAMN37648141-rid19576863.denovo.40, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNGFN010000083.1 Salmonella enterica strain 23SC09CH01-S1 isolate SALM23-0958 SAMN37648141-rid19576863.guided.52, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGFN010000083.1 Salmonella enterica strain 23SC09CH01-S1 isolate SALM23-0958 SAMN37648141-rid19576863.guided.52, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNGFN010000086.1 Salmonella enterica strain 23SC09CH01-S1 isolate SALM23-0958 SAMN37648141-rid19576863.guided.59, whole genome shotgun sequence	2339..2776	Amikacin, Tobramycin	NC_003197	blaCTX-M-65	100	876/876	ABNGFN010000053.1 Salmonella enterica strain 23SC09CH01-S1 isolate SALM23-0958 SAMN37648141-rid19576863.denovo.58, whole genome shotgun sequence	901..1776	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNGFN010000085.1 Salmonella enterica strain 23SC09CH01-S1 isolate SALM23-0958 SAMN37648141-rid19576863.guided.55, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNGFN010000039.1 Salmonella enterica strain 23SC09CH01-S1 isolate SALM23-0958 SAMN37648141-rid19576863.denovo.40, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNGFN010000083.1 Salmonella enterica strain 23SC09CH01-S1 isolate SALM23-0958 SAMN37648141-rid19576863.guided.52, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNGFN010000039.1 Salmonella enterica strain 23SC09CH01-S1 isolate SALM23-0958 SAMN37648141-rid19576863.denovo.40, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGFN010000084.1 Salmonella enterica strain 23SC09CH01-S1 isolate SALM23-0958 SAMN37648141-rid19576863.guided.53, whole genome shotgun sequence	4277..5476	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNGFN010000045.1 Salmonella enterica strain 23SC09CH01-S1 isolate SALM23-0958 SAMN37648141-rid19576863.denovo.46, whole genome shotgun sequence	9109..9668																																																						avrA	ABNGFN010000005.1	94085..94954	99.655	870	0						
GCA_032294885.1_PDT001911886.1_genomic.fna	Salmonella_enterica	0.5212	521.579 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNGFP010000001.1 Salmonella enterica strain PNUSAS388040 SAMN37648370-rid19576853.denovo.01, whole genome shotgun sequence	588728..589165	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNGFP010000024.1 Salmonella enterica strain PNUSAS388040 SAMN37648370-rid19576853.guided.12, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNGFP010000017.1 Salmonella enterica strain PNUSAS388040 SAMN37648370-rid19576853.denovo.20, whole genome shotgun sequence	239..369																																																						avrA	ABNGFP010000003.1	593023..593892	99.425	870	0						
GCA_032294905.1_PDT001911884.1_genomic.fna	Salmonella_enterica	0.5214	366.566 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGFQ010000001.1 Salmonella enterica strain PNUSAS388064 SAMN37648389-rid19576843.denovo.01, whole genome shotgun sequence	176135..176572	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGFQ010000032.1 Salmonella enterica strain PNUSAS388064 SAMN37648389-rid19576843.guided.28, whole genome shotgun sequence	3901..4338	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGFQ010000021.1 Salmonella enterica strain PNUSAS388064 SAMN37648389-rid19576843.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNGFQ010000023.1 Salmonella enterica strain PNUSAS388064 SAMN37648389-rid19576843.denovo.24, whole genome shotgun sequence	3388..3649																																																avrA	ABNGFQ010000002.1	553505..554374	99.54	870	0						
GCA_032294925.1_PDT001911885.1_genomic.fna	Salmonella_enterica	0.5212	706.269 KB	2	aroC_13,dnaN_12,hemD_17,hisD_1544,purE_13,sucA_16,thrA_4	7930	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_1544	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGFO010000001.1 Salmonella enterica strain PNUSAS387034 SAMN37648172-rid19576513.denovo.01, whole genome shotgun sequence	643304..643741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGFO010000024.1 Salmonella enterica strain PNUSAS387034 SAMN37648172-rid19576513.guided.18, whole genome shotgun sequence	5687..6124	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNGFO010000011.1 Salmonella enterica strain PNUSAS387034 SAMN37648172-rid19576513.denovo.11, whole genome shotgun sequence	34930..35463																																																						avrA	ABNGFO010000002.1	497075..497943	99.425	870	0						
GCA_032294945.1_PDT001911883.1_genomic.fna	Salmonella_enterica	0.5208	314.785 KB	6	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNGFR010000001.1 Salmonella enterica strain PNUSAS387037 SAMN37648169-rid19576503.denovo.01, whole genome shotgun sequence	239428..239865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNGFR010000041.1 Salmonella enterica strain PNUSAS387037 SAMN37648169-rid19576503.guided.32, whole genome shotgun sequence	365..802	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNGFR010000014.1 Salmonella enterica strain PNUSAS387037 SAMN37648169-rid19576503.denovo.14, whole genome shotgun sequence	37294..37936	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNGFR010000014.1 Salmonella enterica strain PNUSAS387037 SAMN37648169-rid19576503.denovo.14, whole genome shotgun sequence	10978..11204																																																											
GCA_032294965.1_PDT001911882.1_genomic.fna	Salmonella_enterica	0.5225	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGFS010000001.1 Salmonella enterica strain PNUSAS387022 SAMN37648178-rid19576833.denovo.01, whole genome shotgun sequence	790276..790713	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGFS010000025.1 Salmonella enterica strain PNUSAS387022 SAMN37648178-rid19576833.guided.16, whole genome shotgun sequence	23..460	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGFS010000002.1	157126..157995	98.966	870	0						
GCA_032294985.1_PDT001911881.1_genomic.fna	Salmonella_enterica	0.5213	295.887 KB	5	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncFII(S),IncFII(SARC14)	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGFT010000013.1 Salmonella enterica strain PNUSAS388038 SAMN37648361-rid19576823.denovo.13, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGFT010000038.1 Salmonella enterica strain PNUSAS388038 SAMN37648361-rid19576823.guided.25, whole genome shotgun sequence	18089..18526	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNGFT010000029.1 Salmonella enterica strain PNUSAS388038 SAMN37648361-rid19576823.denovo.32, whole genome shotgun sequence	967..1095	enterobacteriales	IncFII(S)	93.63	251 / 262	ABNGFT010000015.1 Salmonella enterica strain PNUSAS388038 SAMN37648361-rid19576823.denovo.15, whole genome shotgun sequence	75692..75939		enterobacteriales	IncFII(SARC14)	95.07	446 / 445	ABNGFT010000015.1 Salmonella enterica strain PNUSAS388038 SAMN37648361-rid19576823.denovo.15, whole genome shotgun sequence	76199..76643																																																				
GCA_032295005.1_PDT001911880.1_genomic.fna	Salmonella_enterica	0.5222	443.436 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGFU010000001.1 Salmonella enterica strain PNUSAS388058 SAMN37648380-rid19576493.denovo.01, whole genome shotgun sequence	416942..417379	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNGFU010000021.1 Salmonella enterica strain PNUSAS388058 SAMN37648380-rid19576493.guided.17, whole genome shotgun sequence	9472..9909	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGFU010000003.1	563202..564070	99.655	870	0						
GCA_032295025.1_PDT001911879.1_genomic.fna	Salmonella_enterica	0.5197	150.376 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	3	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,tet(B),tet(B)	0		2	IncFII(p96A),IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGFV010000001.1 Salmonella enterica strain PNUSAS388057 SAMN37648382-rid19576813.denovo.01, whole genome shotgun sequence	458966..459403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGFV010000063.1 Salmonella enterica strain PNUSAS388057 SAMN37648382-rid19576813.guided.48, whole genome shotgun sequence	1789..2226	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNGFV010000042.1 Salmonella enterica strain PNUSAS388057 SAMN37648382-rid19576813.denovo.42, whole genome shotgun sequence	13443..14303	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNGFV010000062.1 Salmonella enterica strain PNUSAS388057 SAMN37648382-rid19576813.guided.47, whole genome shotgun sequence	4088..4948	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(B)	100	1206/1206	ABNGFV010000042.1 Salmonella enterica strain PNUSAS388057 SAMN37648382-rid19576813.denovo.42, whole genome shotgun sequence	10942..12147	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNGFV010000062.1 Salmonella enterica strain PNUSAS388057 SAMN37648382-rid19576813.guided.47, whole genome shotgun sequence	1587..2792	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNGFV010000028.1 Salmonella enterica strain PNUSAS388057 SAMN37648382-rid19576813.denovo.28, whole genome shotgun sequence	15755..16288	enterobacteriales	IncY	99.74	765 / 765	ABNGFV010000022.1 Salmonella enterica strain PNUSAS388057 SAMN37648382-rid19576813.denovo.22, whole genome shotgun sequence	63874..64638																																																avrA	ABNGFV010000002.1	467657..468526	99.885	870	0						
GCA_032295045.1_PDT001911876.1_genomic.fna	Salmonella_enterica	0.5215	363.858 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGFX010000001.1 Salmonella enterica strain PNUSAS388060 SAMN37648378-rid19576793.denovo.01, whole genome shotgun sequence	396835..397272	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGFX010000037.1 Salmonella enterica strain PNUSAS388060 SAMN37648378-rid19576793.guided.23, whole genome shotgun sequence	3937..4374	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNGFX010000013.1 Salmonella enterica strain PNUSAS388060 SAMN37648378-rid19576793.denovo.13, whole genome shotgun sequence	68658..68799																																																						avrA	ABNGFX010000002.1	544683..545551	99.425	870	0						
GCA_032295085.1_PDT001911877.1_genomic.fna	Salmonella_enterica	0.5219	216.516 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGFW010000002.1 Salmonella enterica strain PNUSAS388041 SAMN37648358-rid19576803.denovo.02, whole genome shotgun sequence	37883..38320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGFW010000036.1 Salmonella enterica strain PNUSAS388041 SAMN37648358-rid19576803.guided.26, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGFW010000004.1	137703..138571	99.77	870	0						
GCA_032295105.1_PDT001911875.1_genomic.fna	Salmonella_enterica	0.5229	375.521 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGFY010000001.1 Salmonella enterica strain PNUSAS388061 SAMN37648385-rid19576473.denovo.01, whole genome shotgun sequence	460175..460612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGFY010000041.1 Salmonella enterica strain PNUSAS388061 SAMN37648385-rid19576473.guided.32, whole genome shotgun sequence	2028..2465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGFY010000006.1	150817..151686	99.655	870	0						
GCA_032295125.1_PDT001911874.1_genomic.fna	Salmonella_enterica	0.5211	737.693 KB	3	aroC_50,dnaN_10,hemD_25,hisD_72,purE_10,sucA_13,thrA_4	414	9:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(S)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Eastbourne		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNGFZ010000002.1 Salmonella enterica strain PNUSAS387032 SAMN37648216-rid19576783.denovo.02, whole genome shotgun sequence	645511..645948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNGFZ010000019.1 Salmonella enterica strain PNUSAS387032 SAMN37648216-rid19576783.guided.14, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.07	643 / 643	ABNGFZ010000009.1 Salmonella enterica strain PNUSAS387032 SAMN37648216-rid19576783.denovo.09, whole genome shotgun sequence	86588..87230	enterobacteriales	IncFII(S)	100	262 / 262	ABNGFZ010000009.1 Salmonella enterica strain PNUSAS387032 SAMN37648216-rid19576783.denovo.09, whole genome shotgun sequence	23282..23543																																																avrA	ABNGFZ010000004.1	182892..183761	99.31	870	0						
GCA_032295165.1_PDT001911873.1_genomic.fna	Salmonella_enterica	0.5212	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNGGA010000001.1 Salmonella enterica strain PNUSAS387026 SAMN37648175-rid19576463.denovo.01, whole genome shotgun sequence	717104..717541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNGGA010000021.1 Salmonella enterica strain PNUSAS387026 SAMN37648175-rid19576463.guided.16, whole genome shotgun sequence	2921..3358	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGGA010000004.1	548117..548986	99.54	870	0						
GCA_032295185.1_PDT001911868.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGGD010000001.1 Salmonella enterica strain PNUSAS388055 SAMN37648379-rid19576443.denovo.01, whole genome shotgun sequence	774368..774805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGGD010000024.1 Salmonella enterica strain PNUSAS388055 SAMN37648379-rid19576443.guided.17, whole genome shotgun sequence	16055..16492	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGGD010000016.1 Salmonella enterica strain PNUSAS388055 SAMN37648379-rid19576443.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNGGD010000017.1 Salmonella enterica strain PNUSAS388055 SAMN37648379-rid19576443.denovo.20, whole genome shotgun sequence	3398..3659																																																avrA	ABNGGD010000002.1	553506..554375	99.54	870	0						
GCA_032295205.1_PDT001911870.1_genomic.fna	Salmonella_enterica	0.5211	218.249 KB	7	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGGC010000001.1 Salmonella enterica strain PNUSAS388056 SAMN37648381-rid19576453.denovo.01, whole genome shotgun sequence	477379..477816	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGGC010000042.1 Salmonella enterica strain PNUSAS388056 SAMN37648381-rid19576453.guided.37, whole genome shotgun sequence	7418..7855	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNGGC010000021.1 Salmonella enterica strain PNUSAS388056 SAMN37648381-rid19576453.denovo.21, whole genome shotgun sequence	2740..3273																																																						avrA	ABNGGC010000017.1	72368..73238	99.196	871	0						
GCA_032295215.1_PDT001911871.1_genomic.fna	Salmonella_enterica	0.5203	304.379 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGGB010000001.1 Salmonella enterica strain PNUSAS388049 SAMN37648376-rid19576763.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGGB010000029.1 Salmonella enterica strain PNUSAS388049 SAMN37648376-rid19576763.guided.16, whole genome shotgun sequence	10373..10810	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGGB010000021.1 Salmonella enterica strain PNUSAS388049 SAMN37648376-rid19576763.denovo.23, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNGGB010000022.1 Salmonella enterica strain PNUSAS388049 SAMN37648376-rid19576763.denovo.24, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.93	374 / 374	ABNGGB010000016.1 Salmonella enterica strain PNUSAS388049 SAMN37648376-rid19576763.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABNGGB010000002.1	175109..175978	99.54	870	0						
GCA_032295245.1_PDT001911867.1_genomic.fna	Salmonella_enterica	0.5213	225.554 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGGE010000010.1 Salmonella enterica strain PNUSAS388035 SAMN37648364-rid19576743.denovo.10, whole genome shotgun sequence	116827..117264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGGE010000063.1 Salmonella enterica strain PNUSAS388035 SAMN37648364-rid19576743.guided.27, whole genome shotgun sequence	31741..32178	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGGE010000001.1	446702..447570	100	869	0						
GCA_032295265.1_PDT001911866.1_genomic.fna	Salmonella_enterica	0.5213	304.698 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_19,thrA_1	679	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGGF010000007.1 Salmonella enterica strain PNUSAS388039 SAMN37648360-rid19576733.denovo.07, whole genome shotgun sequence	136419..136856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGGF010000041.1 Salmonella enterica strain PNUSAS388039 SAMN37648360-rid19576733.guided.22, whole genome shotgun sequence	31243..31680	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGGF010000008.1	102072..102937	98.966	870	0						
GCA_032295285.1_PDT001911864.1_genomic.fna	Salmonella_enterica	0.5215	299.395 KB	7	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGGH010000009.1 Salmonella enterica strain PNUSAS388032 SAMN37648363-rid19576723.denovo.09, whole genome shotgun sequence	78381..78818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGGH010000037.1 Salmonella enterica strain PNUSAS388032 SAMN37648363-rid19576723.guided.33, whole genome shotgun sequence	3306..3743	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGGH010000001.1	145061..145929	99.31	870	0						
GCA_032295295.1_PDT001911865.1_genomic.fna	Salmonella_enterica	0.521	202.454 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGGG010000001.1 Salmonella enterica strain PNUSAS388029 SAMN37648369-rid19576433.denovo.01, whole genome shotgun sequence	368586..369023	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGGG010000047.1 Salmonella enterica strain PNUSAS388029 SAMN37648369-rid19576433.guided.26, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNGGG010000015.1 Salmonella enterica strain PNUSAS388029 SAMN37648369-rid19576433.denovo.15, whole genome shotgun sequence	108765..109407																																																																	
GCA_032295325.1_PDT001911862.1_genomic.fna	Salmonella_enterica	0.5209	391.761 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGGJ010000001.1 Salmonella enterica strain PNUSAS388030 SAMN37648374-rid19576713.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGGJ010000031.1 Salmonella enterica strain PNUSAS388030 SAMN37648374-rid19576713.guided.18, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGGJ010000003.1	120799..121668	99.31	870	0						
GCA_032295345.1_PDT001911863.1_genomic.fna	Salmonella_enterica	0.5211	342.917 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGGI010000001.1 Salmonella enterica strain PNUSAS388028 SAMN37648372-rid19576423.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGGI010000025.1 Salmonella enterica strain PNUSAS388028 SAMN37648372-rid19576423.guided.17, whole genome shotgun sequence	18166..18603	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGGI010000019.1 Salmonella enterica strain PNUSAS388028 SAMN37648372-rid19576423.denovo.22, whole genome shotgun sequence	6842..7484	enterobacteriales	IncFII(S)	100	262 / 262	ABNGGI010000020.1 Salmonella enterica strain PNUSAS388028 SAMN37648372-rid19576423.denovo.23, whole genome shotgun sequence	3403..3664																																																avrA	ABNGGI010000002.1	553636..554505	99.54	870	0						
GCA_032295365.1_PDT001911861.1_genomic.fna	Salmonella_enterica	0.5214	225.827 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGGK010000001.1 Salmonella enterica strain PNUSAS388033 SAMN37648362-rid19576703.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGGK010000060.1 Salmonella enterica strain PNUSAS388033 SAMN37648362-rid19576703.guided.41, whole genome shotgun sequence	2751..3188	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGGK010000004.1	174650..175518	100	869	0						
GCA_032295385.1_PDT001911860.1_genomic.fna	Salmonella_enterica	0.5196	156.166 KB	11	aroC_110,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2711	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_110	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNGGL010000001.1 Salmonella enterica strain PNUSAS388045 SAMN37648359-rid19576413.denovo.01, whole genome shotgun sequence	42641..43078	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNGGL010000062.1 Salmonella enterica strain PNUSAS388045 SAMN37648359-rid19576413.guided.37, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNGGL010000039.1 Salmonella enterica strain PNUSAS388045 SAMN37648359-rid19576413.denovo.41, whole genome shotgun sequence	2610..3252																																																																	
GCA_032295405.1_PDT001911859.1_genomic.fna	Salmonella_enterica	0.5154	196.223 KB	8	aroC_470,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2197	50:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(Yp)	aroC	100	100	aroC_470	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABNGGO010000004.1 Salmonella enterica strain PNUSAS388044 SAMN37648371-rid19576693.denovo.04, whole genome shotgun sequence	288124..288561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABNGGO010000056.1 Salmonella enterica strain PNUSAS388044 SAMN37648371-rid19576693.guided.37, whole genome shotgun sequence	1411..1848	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	92.61	230 / 230	ABNGGO010000025.1 Salmonella enterica strain PNUSAS388044 SAMN37648371-rid19576693.denovo.25, whole genome shotgun sequence	51954..52182																																																																	
GCA_032295415.1_PDT001911858.1_genomic.fna	Salmonella_enterica	0.5209	430.47 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGGM010000001.1 Salmonella enterica strain PNUSAS388034 SAMN37648365-rid19576403.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGGM010000047.1 Salmonella enterica strain PNUSAS388034 SAMN37648365-rid19576403.guided.23, whole genome shotgun sequence	10341..10778	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGGM010000002.1	504328..505198	99.196	871	0						
GCA_032295445.1_PDT001911857.1_genomic.fna	Salmonella_enterica	0.5224	443.296 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGGN010000001.1 Salmonella enterica strain PNUSAS388036 SAMN37648356-rid19576683.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGGN010000030.1 Salmonella enterica strain PNUSAS388036 SAMN37648356-rid19576683.guided.16, whole genome shotgun sequence	16106..16543	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGGN010000002.1	129881..130750	98.966	870	0						
GCA_032295465.1_PDT001911855.1_genomic.fna	Salmonella_enterica	0.5217	219.542 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGGQ010000001.1 Salmonella enterica strain PNUSAS388046 SAMN37648368-rid19576663.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGGQ010000039.1 Salmonella enterica strain PNUSAS388046 SAMN37648368-rid19576663.guided.34, whole genome shotgun sequence	3873..4310	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGGQ010000004.1	125749..126617	99.77	870	0						
GCA_032295485.1_PDT001911856.1_genomic.fna	Salmonella_enterica	0.522	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGGP010000001.1 Salmonella enterica strain PNUSAS388037 SAMN37648357-rid19576673.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGGP010000023.1 Salmonella enterica strain PNUSAS388037 SAMN37648357-rid19576673.guided.14, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGGP010000002.1	129887..130756	98.966	870	0						
GCA_032295505.1_PDT001911854.1_genomic.fna	Salmonella_enterica	0.5211	761.787 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(29),IncI2	aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGGR010000001.1 Salmonella enterica strain PNUSAS388042 SAMN37648366-rid19576653.denovo.01, whole genome shotgun sequence	481936..482373	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNGGR010000025.1 Salmonella enterica strain PNUSAS388042 SAMN37648366-rid19576653.guided.17, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(29)	97.68	259 / 259	ABNGGR010000011.1 Salmonella enterica strain PNUSAS388042 SAMN37648366-rid19576653.denovo.11, whole genome shotgun sequence	53281..53539	enterobacteriales	IncI2	100	324 / 324	ABNGGR010000012.1 Salmonella enterica strain PNUSAS388042 SAMN37648366-rid19576653.denovo.13, whole genome shotgun sequence	25561..25884																																																avrA	ABNGGR010000004.1	553755..554624	99.77	870	0						
GCA_032295585.1_PDT001911846.1_genomic.fna	Salmonella_enterica	0.5222	378.933 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGGT010000001.1 Salmonella enterica strain PNUSAS387038 SAMN37648218-rid19576353.denovo.01, whole genome shotgun sequence	170661..171098	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGGT010000034.1 Salmonella enterica strain PNUSAS387038 SAMN37648218-rid19576353.guided.22, whole genome shotgun sequence	9114..9551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGGT010000002.1	140491..141360	99.31	870	0						
GCA_032295605.1_PDT001911847.1_genomic.fna	Salmonella_enterica	0.5213	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNGGS010000001.1 Salmonella enterica strain PNUSAS387016 SAMN37648223-rid19576363.denovo.01, whole genome shotgun sequence	717104..717541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNGGS010000020.1 Salmonella enterica strain PNUSAS387016 SAMN37648223-rid19576363.guided.17, whole genome shotgun sequence	2331..2768	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGGS010000004.1	160393..161262	99.54	870	0						
GCA_032295625.1_PDT001911845.1_genomic.fna	Salmonella_enterica	0.5195	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNGGU010000001.1 Salmonella enterica strain PNUSAS387018 SAMN37648221-rid19576343.denovo.01, whole genome shotgun sequence	717104..717541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNGGU010000024.1 Salmonella enterica strain PNUSAS387018 SAMN37648221-rid19576343.guided.13, whole genome shotgun sequence	33283..33720	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGGU010000004.1	548111..548980	99.54	870	0						
GCA_032295645.1_PDT001911844.1_genomic.fna	Salmonella_enterica	0.521	417.752 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38*	95*	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	99.8003992015968	100	thrA_38*	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNGGV010000002.1 Salmonella enterica strain PNUSAS387019 SAMN37648220-rid19576333.denovo.02, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNGGV010000044.1 Salmonella enterica strain PNUSAS387019 SAMN37648220-rid19576333.guided.16, whole genome shotgun sequence	44320..44757	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGGV010000011.1	101941..102810	99.655	870	0						
GCA_032295685.1_PDT001911842.1_genomic.fna	Salmonella_enterica	0.5207	382.384 KB	4	aroC_72,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2009	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_72	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNGGW010000001.1 Salmonella enterica strain PNUSAS387031 SAMN37648217-rid19576323.denovo.01, whole genome shotgun sequence	419512..419949	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNGGW010000033.1 Salmonella enterica strain PNUSAS387031 SAMN37648217-rid19576323.guided.17, whole genome shotgun sequence	3054..3491	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGGW010000002.1	93969..94838	99.31	870	0						
GCA_032295705.1_PDT001911837.1_genomic.fna	Salmonella_enterica	0.5212	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNGGY010000001.1 Salmonella enterica strain PNUSAS387027 SAMN37648174-rid19576283.denovo.01, whole genome shotgun sequence	704722..705159	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNGGY010000017.1 Salmonella enterica strain PNUSAS387027 SAMN37648174-rid19576283.guided.13, whole genome shotgun sequence	1201..1638	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGGY010000004.1	160638..161507	99.54	870	0						
GCA_032295725.1_PDT001911832.1_genomic.fna	Salmonella_enterica	0.5218	400.925 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGHB010000001.1 Salmonella enterica strain PNUSAS387025 SAMN37648171-rid19576243.denovo.01, whole genome shotgun sequence	645025..645462	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNGHB010000036.1 Salmonella enterica strain PNUSAS387025 SAMN37648171-rid19576243.guided.20, whole genome shotgun sequence	8802..9239	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGHB010000003.1	514773..515641	99.54	870	0						
GCA_032295745.1_PDT001911835.1_genomic.fna	Salmonella_enterica	0.5211	734.05 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGHA010000003.1 Salmonella enterica strain PNUSAS387036 SAMN37648167-rid19576263.denovo.03, whole genome shotgun sequence	445874..446311	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGHA010000022.1 Salmonella enterica strain PNUSAS387036 SAMN37648167-rid19576263.guided.15, whole genome shotgun sequence	19147..19584	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGHA010000002.1	609012..609880	99.195	870	0						
GCA_032295805.1_PDT001911826.1_genomic.fna	Salmonella_enterica	0.5234	71.648 KB	24	aroC_13,dnaN_11,hemD_25,hisD_197,purE_12,sucA_71,thrA_4	548	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_197	purE	100	100	purE_12	sucA	100	100	sucA_71	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGHD010000010.1 Salmonella enterica strain PNUSAS387949 SAMN37645859-rid19576193.denovo.010, whole genome shotgun sequence	52324..52761	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGHD010000133.1 Salmonella enterica strain PNUSAS387949 SAMN37645859-rid19576193.guided.087, whole genome shotgun sequence	13710..14147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGHD010000014.1	62093..62962	99.31	870	0						
GCA_032295825.1_PDT001911823.1_genomic.fna	Salmonella_enterica	0.5227	202.307 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGHE010000001.1 Salmonella enterica strain PNUSAS387978 SAMN37645824-rid19575603.denovo.01, whole genome shotgun sequence	622355..622792	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGHE010000045.1 Salmonella enterica strain PNUSAS387978 SAMN37645824-rid19575603.guided.34, whole genome shotgun sequence	4635..5072	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGHE010000002.1	39430..40299	99.655	870	0						
GCA_032295865.1_PDT001911812.1_genomic.fna	Salmonella_enterica	0.521	381.997 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGHI010000001.1 Salmonella enterica strain PNUSAS387944 SAMN37645832-rid19576083.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGHI010000027.1 Salmonella enterica strain PNUSAS387944 SAMN37645832-rid19576083.guided.14, whole genome shotgun sequence	24926..25363	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGHI010000019.1 Salmonella enterica strain PNUSAS387944 SAMN37645832-rid19576083.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNGHI010000020.1 Salmonella enterica strain PNUSAS387944 SAMN37645832-rid19576083.denovo.23, whole genome shotgun sequence	3393..3654																																																avrA	ABNGHI010000002.1	584148..585017	99.54	870	0						
GCA_032295875.1_PDT001911815.1_genomic.fna	Salmonella_enterica	0.523	41.909 KB	39	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),Col440I,Col440II,IncI1-I(Alpha)	aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNGHJ010000062.1 Salmonella enterica strain PNUSAS387955 SAMN37645855-rid19576103.denovo.062, whole genome shotgun sequence	12833..13270	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNGHJ010000224.1 Salmonella enterica strain PNUSAS387955 SAMN37645855-rid19576103.guided.089, whole genome shotgun sequence	7812..8249	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.44	119 / 131	ABNGHJ010000160.1 Salmonella enterica strain PNUSAS387955 SAMN37645855-rid19576103.denovo.163, whole genome shotgun sequence	1021..1139	enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNGHJ010000175.1 Salmonella enterica strain PNUSAS387955 SAMN37645855-rid19576103.denovo.178, whole genome shotgun sequence	548..676		enterobacteriales	Col440I	90.27	113 / 114	ABNGHJ010000157.1 Salmonella enterica strain PNUSAS387955 SAMN37645855-rid19576103.denovo.160, whole genome shotgun sequence	3345..3457		enterobacteriales	Col440II	90.75	281 / 282	ABNGHJ010000160.1 Salmonella enterica strain PNUSAS387955 SAMN37645855-rid19576103.denovo.163, whole genome shotgun sequence	1722..2002		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNGHJ010000158.1 Salmonella enterica strain PNUSAS387955 SAMN37645855-rid19576103.denovo.161, whole genome shotgun sequence	261..402																											avrA	ABNGHJ010000034.1	43608..44477	99.425	870	0						
GCA_032295905.1_PDT001911820.1_genomic.fna	Salmonella_enterica	0.5206	385.394 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGHH010000001.1 Salmonella enterica strain PNUSAS386994 SAMN37645815-rid19576143.denovo.01, whole genome shotgun sequence	523903..524340	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGHH010000029.1 Salmonella enterica strain PNUSAS386994 SAMN37645815-rid19576143.guided.20, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032295925.1_PDT001911821.1_genomic.fna	Salmonella_enterica	0.5153	86.261 KB	16	aroC_88,dnaN_26,hemD_30,hisD_55,purE_21,sucA_68,thrA_80	432	61:k:1,5,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_55	purE	100	100	purE_21	sucA	100	100	sucA_68	thrA	100	100	thrA_80	61	k	1,5,7	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:k:1,5,(7)		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGHG010000021.1 Salmonella enterica strain PNUSAS387958 SAMN37645852-rid19576153.denovo.021, whole genome shotgun sequence	20898..21335	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGHG010000125.1 Salmonella enterica strain PNUSAS387958 SAMN37645852-rid19576153.guided.055, whole genome shotgun sequence	15958..16395	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	99.73	377 / 377	ABNGHG010000034.1 Salmonella enterica strain PNUSAS387958 SAMN37645852-rid19576153.denovo.034, whole genome shotgun sequence	13301..13677																																																						avrA	ABNGHG010000013.1	83378..84247	96.552	870	0						
GCA_032295945.1_PDT001911822.1_genomic.fna	Salmonella_enterica	0.5216	369.402 KB	5	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGHF010000001.1 Salmonella enterica strain PNUSAS387005 SAMN37645818-rid19576163.denovo.01, whole genome shotgun sequence	375067..375504	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGHF010000031.1 Salmonella enterica strain PNUSAS387005 SAMN37645818-rid19576163.guided.25, whole genome shotgun sequence	16647..17084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGHF010000008.1	149567..150436	99.425	870	0						
GCA_032295965.1_PDT001911811.1_genomic.fna	Salmonella_enterica	0.5219	443.001 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGHK010000002.1 Salmonella enterica strain PNUSAS386997 SAMN37645283-rid19576073.denovo.02, whole genome shotgun sequence	262494..262931	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNGHK010000028.1 Salmonella enterica strain PNUSAS386997 SAMN37645283-rid19576073.guided.22, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGHK010000001.1	562140..563010	99.656	871	0						
GCA_032296005.1_PDT001911805.1_genomic.fna	Salmonella_enterica	0.512	273.579 KB	7	aroC_451,dnaN_26,hemD_339,hisD_460,purE_21,sucA_353,thrA_471	2631	48:z52:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_451	dnaN	100	100	dnaN_26	hemD	100	100	hemD_339	hisD	100	100	hisD_460	purE	100	100	purE_21	sucA	100	100	sucA_353	thrA	100	100	thrA_471	48	z52	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:z52:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGHM010000005.1 Salmonella enterica strain PNUSAS388022 SAMN37646128-rid19576023.denovo.05, whole genome shotgun sequence	117566..118003	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGHM010000056.1 Salmonella enterica strain PNUSAS388022 SAMN37646128-rid19576023.guided.26, whole genome shotgun sequence	37207..37644	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGHM010000004.1	144597..145466	96.552	870	0						
GCA_032296025.1_PDT001911804.1_genomic.fna	Salmonella_enterica	0.522	682.53 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGHO010000001.1 Salmonella enterica strain PNUSAS388026 SAMN37646126-rid19575563.denovo.01, whole genome shotgun sequence	458315..458752	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNGHO010000026.1 Salmonella enterica strain PNUSAS388026 SAMN37646126-rid19575563.guided.14, whole genome shotgun sequence	18045..18482	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGHO010000003.1	507564..508433	99.655	870	0						
GCA_032296045.1_PDT001911803.1_genomic.fna	Salmonella_enterica	0.5212	470.179 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGHP010000001.1 Salmonella enterica strain PNUSAS388027 SAMN37646127-rid19575553.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGHP010000030.1 Salmonella enterica strain PNUSAS388027 SAMN37646127-rid19575553.guided.21, whole genome shotgun sequence	12567..13004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGHP010000021.1 Salmonella enterica strain PNUSAS388027 SAMN37646127-rid19575553.denovo.23, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNGHP010000018.1 Salmonella enterica strain PNUSAS388027 SAMN37646127-rid19575553.denovo.19, whole genome shotgun sequence	5998..6259																																																avrA	ABNGHP010000006.1	174992..175861	99.54	870	0						
GCA_032296105.1_PDT001911799.1_genomic.fna	Salmonella_enterica	0.5205	477.487 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGHR010000001.1 Salmonella enterica strain PNUSAS387973 SAMN37645821-rid19575993.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGHR010000026.1 Salmonella enterica strain PNUSAS387973 SAMN37645821-rid19575993.guided.14, whole genome shotgun sequence	8479..8916	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABNGHR010000014.1 Salmonella enterica strain PNUSAS387973 SAMN37645821-rid19575993.denovo.15, whole genome shotgun sequence	32011..32384																																																						avrA	ABNGHR010000011.1	39496..40365	99.54	870	0						
GCA_032296205.1_PDT001911772.1_genomic.fna	Salmonella_enterica	0.5235	59.406 KB	25	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGHW010000011.1 Salmonella enterica strain PNUSAS387951 SAMN37645857-rid19575803.denovo.011, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGHW010000106.1 Salmonella enterica strain PNUSAS387951 SAMN37645857-rid19575803.denovo.108, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNGHW010000106.1 Salmonella enterica strain PNUSAS387951 SAMN37645857-rid19575803.denovo.108, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGHW010000106.1 Salmonella enterica strain PNUSAS387951 SAMN37645857-rid19575803.denovo.108, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGHW010000106.1 Salmonella enterica strain PNUSAS387951 SAMN37645857-rid19575803.denovo.108, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGHW010000106.1 Salmonella enterica strain PNUSAS387951 SAMN37645857-rid19575803.denovo.108, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNGHW010000134.1 Salmonella enterica strain PNUSAS387951 SAMN37645857-rid19575803.guided.094, whole genome shotgun sequence	9330..9767	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGHW010000136.1 Salmonella enterica strain PNUSAS387951 SAMN37645857-rid19575803.guided.113, whole genome shotgun sequence	1681..2517	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNGHW010000136.1 Salmonella enterica strain PNUSAS387951 SAMN37645857-rid19575803.guided.113, whole genome shotgun sequence	879..1681	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGHW010000136.1 Salmonella enterica strain PNUSAS387951 SAMN37645857-rid19575803.guided.113, whole genome shotgun sequence	878..1681	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGHW010000136.1 Salmonella enterica strain PNUSAS387951 SAMN37645857-rid19575803.guided.113, whole genome shotgun sequence	878..1681	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGHW010000136.1 Salmonella enterica strain PNUSAS387951 SAMN37645857-rid19575803.guided.113, whole genome shotgun sequence	878..1681	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNGHW010000107.1 Salmonella enterica strain PNUSAS387951 SAMN37645857-rid19575803.denovo.110, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGHW010000135.1 Salmonella enterica strain PNUSAS387951 SAMN37645857-rid19575803.guided.109, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNGHW010000117.1 Salmonella enterica strain PNUSAS387951 SAMN37645857-rid19575803.denovo.122, whole genome shotgun sequence	805..997																																																						avrA	ABNGHW010000041.1	39779..40648	99.655	870	0						
GCA_032296225.1_PDT001911767.1_genomic.fna	Salmonella_enterica	0.522	90.068 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGHY010000029.1 Salmonella enterica strain PNUSAS387956 SAMN37645850-rid19575763.denovo.29, whole genome shotgun sequence	12558..12995	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGHY010000086.1 Salmonella enterica strain PNUSAS387956 SAMN37645850-rid19575763.guided.56, whole genome shotgun sequence	15174..15611	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNGHY010000016.1 Salmonella enterica strain PNUSAS387956 SAMN37645850-rid19575763.denovo.16, whole genome shotgun sequence	48451..49093	enterobacteriales	IncFII(S)	100	262 / 262	ABNGHY010000016.1 Salmonella enterica strain PNUSAS387956 SAMN37645850-rid19575763.denovo.16, whole genome shotgun sequence	64178..64439																																																avrA	ABNGHY010000003.1	105295..106164	99.885	870	0						
GCA_032296245.1_PDT001911769.1_genomic.fna	Salmonella_enterica	0.5207	242.738 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGHX010000001.1 Salmonella enterica strain PNUSAS386995 SAMN37645819-rid19575773.denovo.01, whole genome shotgun sequence	207338..207775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGHX010000050.1 Salmonella enterica strain PNUSAS386995 SAMN37645819-rid19575773.guided.24, whole genome shotgun sequence	40081..40518	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNGHX010000034.1 Salmonella enterica strain PNUSAS386995 SAMN37645819-rid19575773.denovo.35, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNGHX010000029.1 Salmonella enterica strain PNUSAS386995 SAMN37645819-rid19575773.denovo.30, whole genome shotgun sequence	29382..29643		enterobacteriales	IncX1	98.93	374 / 374	ABNGHX010000027.1 Salmonella enterica strain PNUSAS386995 SAMN37645819-rid19575773.denovo.28, whole genome shotgun sequence	27988..28361																																									avrA	ABNGHX010000007.1	174352..175221	99.885	870	0						
GCA_032296265.1_PDT001911764.1_genomic.fna	Salmonella_enterica	0.5186	387.668 KB	5	aroC_43,dnaN_47,hemD_49,hisD_16,purE_41,sucA_15,thrA_3	241	4:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Bredeney		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGHZ010000002.1 Salmonella enterica strain PNUSAS387977 SAMN37645823-rid19575743.denovo.02, whole genome shotgun sequence	82628..83065	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGHZ010000035.1 Salmonella enterica strain PNUSAS387977 SAMN37645823-rid19575743.guided.18, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	97.41	193 / 193	ABNGHZ010000025.1 Salmonella enterica strain PNUSAS387977 SAMN37645823-rid19575743.denovo.28, whole genome shotgun sequence	278..470																																																						avrA	ABNGHZ010000005.1	39430..40298	98.851	870	0						
GCA_032296285.1_PDT001911760.1_genomic.fna	Salmonella_enterica	0.5233	99.218 KB	14	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGIA010000002.1 Salmonella enterica strain PNUSAS387954 SAMN37645849-rid19575723.denovo.02, whole genome shotgun sequence	83739..84176	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.76	413/438	ABNGIA010000077.1 Salmonella enterica strain PNUSAS387954 SAMN37645849-rid19575723.guided.63, whole genome shotgun sequence	1..413	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGIA010000015.1	94982..95851	99.77	870	0						
GCA_032296305.1_PDT001911759.1_genomic.fna	Salmonella_enterica	0.5221	224.685 KB	7	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGIB010000001.1 Salmonella enterica strain PNUSAS386996 SAMN37645836-rid19575713.denovo.01, whole genome shotgun sequence	170084..170521	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGIB010000036.1 Salmonella enterica strain PNUSAS386996 SAMN37645836-rid19575713.guided.31, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032296325.1_PDT001911757.1_genomic.fna	Salmonella_enterica	0.5205	318.39 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGIC010000001.1 Salmonella enterica strain PNUSAS387942 SAMN37645817-rid19575703.denovo.01, whole genome shotgun sequence	671560..671997	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGIC010000034.1 Salmonella enterica strain PNUSAS387942 SAMN37645817-rid19575703.guided.28, whole genome shotgun sequence	14092..14529	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGIC010000010.1	111035..111903	99.31	870	0						
GCA_032296335.1_PDT001911756.1_genomic.fna	Salmonella_enterica	0.5191	215.915 KB	7	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGID010000002.1 Salmonella enterica strain PNUSAS387946 SAMN37645830-rid19575403.denovo.02, whole genome shotgun sequence	370303..370740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGID010000052.1 Salmonella enterica strain PNUSAS387946 SAMN37645830-rid19575403.guided.40, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032296425.1_PDT001911758.1_genomic.fna	Salmonella_enterica	0.5244	28.569 KB	52	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	-:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col156,ColpVC	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	-	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGIE010000058.1 Salmonella enterica strain PNUSAS387957 SAMN37645854-rid19575413.denovo.058, whole genome shotgun sequence	14158..14595	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGIE010000280.1 Salmonella enterica strain PNUSAS387957 SAMN37645854-rid19575413.guided.184, whole genome shotgun sequence	3570..4007	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	99.35	154 / 154	ABNGIE010000179.1 Salmonella enterica strain PNUSAS387957 SAMN37645854-rid19575413.denovo.180, whole genome shotgun sequence	4972..5125	enterobacteriales	ColpVC	97.41	193 / 193	ABNGIE010000242.1 Salmonella enterica strain PNUSAS387957 SAMN37645854-rid19575413.denovo.246, whole genome shotgun sequence	279..471																																																avrA	ABNGIE010000019.1	43411..44279	99.195	870	0						
GCA_032297195.1_PDT001835042.1_genomic.fna	Salmonella_enterica	0.5219	699.69 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGIO010000001.1 Salmonella enterica strain PNUSAS367307 SAMN36770178-rid18936713.denovo.01, whole genome shotgun sequence	596592..597029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGIO010000021.1 Salmonella enterica strain PNUSAS367307 SAMN36770178-rid18936713.guided.15, whole genome shotgun sequence	20145..20582	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGIO010000002.1	544410..545278	99.425	870	0						
GCA_032297215.1_PDT001835028.1_genomic.fna	Salmonella_enterica	0.521	377.06 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGIZ010000004.1 Salmonella enterica strain PNUSAS367294 SAMN36770179-rid18937063.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGIZ010000049.1 Salmonella enterica strain PNUSAS367294 SAMN36770179-rid18937063.guided.19, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNGIZ010000015.1 Salmonella enterica strain PNUSAS367294 SAMN36770179-rid18937063.denovo.15, whole genome shotgun sequence	48420..49062	enterobacteriales	IncFII(S)	100	262 / 262	ABNGIZ010000015.1 Salmonella enterica strain PNUSAS367294 SAMN36770179-rid18937063.denovo.15, whole genome shotgun sequence	64147..64408																																																avrA	ABNGIZ010000001.1	446760..447628	100	869	0						
GCA_032297235.1_PDT001835026.1_genomic.fna	Salmonella_enterica	0.5223	682.779 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGJA010000001.1 Salmonella enterica strain PNUSAS367302 SAMN36770167-rid18936673.denovo.01, whole genome shotgun sequence	510636..511073	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGJA010000019.1 Salmonella enterica strain PNUSAS367302 SAMN36770167-rid18936673.guided.17, whole genome shotgun sequence	3052..3489	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGJA010000004.1	544607..545475	99.425	870	0						
GCA_032297275.1_PDT001835038.1_genomic.fna	Salmonella_enterica	0.5219	682.62 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGIR010000001.1 Salmonella enterica strain PNUSAS367303 SAMN36770177-rid18937143.denovo.01, whole genome shotgun sequence	596592..597029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGIR010000021.1 Salmonella enterica strain PNUSAS367303 SAMN36770177-rid18937143.guided.16, whole genome shotgun sequence	11440..11877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGIR010000004.1	544613..545481	99.425	870	0						
GCA_032297295.1_PDT001835037.1_genomic.fna	Salmonella_enterica	0.5213	489.844 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGIS010000001.1 Salmonella enterica strain PNUSAS367289 SAMN36770174-rid18937133.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGIS010000026.1 Salmonella enterica strain PNUSAS367289 SAMN36770174-rid18937133.guided.20, whole genome shotgun sequence	1723..2160	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGIS010000012.1 Salmonella enterica strain PNUSAS367289 SAMN36770174-rid18937133.denovo.12, whole genome shotgun sequence	40541..41183	enterobacteriales	IncFII(S)	100	262 / 262	ABNGIS010000015.1 Salmonella enterica strain PNUSAS367289 SAMN36770174-rid18937133.denovo.16, whole genome shotgun sequence	3385..3646																																																avrA	ABNGIS010000002.1	553181..554050	99.54	870	0						
GCA_032297315.1_PDT001835041.1_genomic.fna	Salmonella_enterica	0.5211	438.032 KB	2	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNGIP010000001.1 Salmonella enterica strain PNUSAS367300 SAMN36770164-rid18936703.denovo.01, whole genome shotgun sequence	1390647..1391084	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNGIP010000028.1 Salmonella enterica strain PNUSAS367300 SAMN36770164-rid18936703.guided.13, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGIP010000004.1	93998..94867	99.425	870	0						
GCA_032297335.1_PDT001835036.1_genomic.fna	Salmonella_enterica	0.5209	490.155 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGIT010000001.1 Salmonella enterica strain PNUSAS367301 SAMN36770171-rid18936693.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGIT010000022.1 Salmonella enterica strain PNUSAS367301 SAMN36770171-rid18936693.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGIT010000012.1 Salmonella enterica strain PNUSAS367301 SAMN36770171-rid18936693.denovo.14, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABNGIT010000015.1 Salmonella enterica strain PNUSAS367301 SAMN36770171-rid18936693.denovo.18, whole genome shotgun sequence	3397..3658																																																avrA	ABNGIT010000002.1	553678..554547	99.54	870	0						
GCA_032297355.1_PDT001835039.1_genomic.fna	Salmonella_enterica	0.5205	447.299 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGIQ010000002.1 Salmonella enterica strain PNUSAS367286 SAMN36770163-rid18937153.denovo.02, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGIQ010000032.1 Salmonella enterica strain PNUSAS367286 SAMN36770163-rid18937153.guided.20, whole genome shotgun sequence	22229..22666	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGIQ010000003.1	514966..515834	99.195	870	0						
GCA_032297375.1_PDT001835035.1_genomic.fna	Salmonella_enterica	0.5207	430.468 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGIU010000001.1 Salmonella enterica strain PNUSAS367296 SAMN36770176-rid18937123.denovo.01, whole genome shotgun sequence	477459..477896	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGIU010000044.1 Salmonella enterica strain PNUSAS367296 SAMN36770176-rid18937123.guided.21, whole genome shotgun sequence	2817..3254	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGIU010000002.1	503807..504677	99.196	871	0						
GCA_032297395.1_PDT001835033.1_genomic.fna	Salmonella_enterica	0.5212	377.051 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGIW010000004.1 Salmonella enterica strain PNUSAS367288 SAMN36770168-rid18937103.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGIW010000048.1 Salmonella enterica strain PNUSAS367288 SAMN36770168-rid18937103.guided.21, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGIW010000001.1	446755..447623	100	869	0						
GCA_032297405.1_PDT001835034.1_genomic.fna	Salmonella_enterica	0.5204	517.535 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGIV010000001.1 Salmonella enterica strain PNUSAS367293 SAMN36770180-rid18937113.denovo.01, whole genome shotgun sequence	384752..385189	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGIV010000046.1 Salmonella enterica strain PNUSAS367293 SAMN36770180-rid18937113.guided.10, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGIV010000003.1	504152..505022	99.196	871	0						
GCA_032297435.1_PDT001835031.1_genomic.fna	Salmonella_enterica	0.5216	405.443 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGIY010000002.1 Salmonella enterica strain PNUSAS367291 SAMN36770172-rid18936683.denovo.02, whole genome shotgun sequence	383572..384009	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGIY010000037.1 Salmonella enterica strain PNUSAS367291 SAMN36770172-rid18936683.guided.26, whole genome shotgun sequence	2601..3038	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGIY010000011.1	93868..94736	99.195	870	0						
GCA_032297455.1_PDT001835032.1_genomic.fna	Salmonella_enterica	0.5209	648.283 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col156,IncX4	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGIX010000001.1 Salmonella enterica strain PNUSAS367308 SAMN36770162-rid18937093.denovo.01, whole genome shotgun sequence	643221..643658	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGIX010000023.1 Salmonella enterica strain PNUSAS367308 SAMN36770162-rid18937093.guided.08, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.16	154 / 154	ABNGIX010000015.1 Salmonella enterica strain PNUSAS367308 SAMN36770162-rid18937093.denovo.18, whole genome shotgun sequence	4074..4227	enterobacteriales	IncX4	98.88	712 / 712	ABNGIX010000012.1 Salmonella enterica strain PNUSAS367308 SAMN36770162-rid18937093.denovo.14, whole genome shotgun sequence	74..785																																																avrA	ABNGIX010000002.1	496427..497295	99.425	870	0						
GCA_032297475.1_PDT001835025.1_genomic.fna	Salmonella_enterica	0.5219	702.154 KB	3	aroC_11,dnaN_10,hemD_25,hisD_42,purE_40,sucA_13,thrA_4	411	4:e,h:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNGJB010000001.1 Salmonella enterica strain PNUSAS367290 SAMN36770169-rid18937043.denovo.01, whole genome shotgun sequence	623574..624011	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNGJB010000022.1 Salmonella enterica strain PNUSAS367290 SAMN36770169-rid18937043.guided.15, whole genome shotgun sequence	13235..13672	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGJB010000003.1	162640..163509	99.54	870	0						
GCA_032297495.1_PDT001835023.1_genomic.fna	Salmonella_enterica	0.5213	324.449 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGJC010000001.1 Salmonella enterica strain PNUSAS367304 SAMN36770158-rid18937023.denovo.01, whole genome shotgun sequence	413096..413533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGJC010000045.1 Salmonella enterica strain PNUSAS367304 SAMN36770158-rid18937023.guided.27, whole genome shotgun sequence	8404..8841	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNGJC010000016.1 Salmonella enterica strain PNUSAS367304 SAMN36770158-rid18937023.denovo.16, whole genome shotgun sequence	48399..49041	enterobacteriales	IncFII(S)	100	262 / 262	ABNGJC010000016.1 Salmonella enterica strain PNUSAS367304 SAMN36770158-rid18937023.denovo.16, whole genome shotgun sequence	64126..64387																																																avrA	ABNGJC010000002.1	207975..208844	99.885	870	0						
GCA_032297515.1_PDT001835022.1_genomic.fna	Salmonella_enterica	0.5213	282.836 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGJD010000001.1 Salmonella enterica strain PNUSAS367297 SAMN36770160-rid18937013.denovo.01, whole genome shotgun sequence	570674..571111	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGJD010000053.1 Salmonella enterica strain PNUSAS367297 SAMN36770160-rid18937013.guided.33, whole genome shotgun sequence	3336..3773	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNGJD010000027.1 Salmonella enterica strain PNUSAS367297 SAMN36770160-rid18937013.denovo.28, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNGJD010000052.1 Salmonella enterica strain PNUSAS367297 SAMN36770160-rid18937013.guided.32, whole genome shotgun sequence	6227..7432	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABNGJD010000002.1	540747..541616	99.885	870	0						
GCA_032297535.1_PDT001835018.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGJH010000001.1 Salmonella enterica strain PNUSAS367309 SAMN36770140-rid18936983.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGJH010000023.1 Salmonella enterica strain PNUSAS367309 SAMN36770140-rid18936983.guided.20, whole genome shotgun sequence	3487..3924	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGJH010000012.1 Salmonella enterica strain PNUSAS367309 SAMN36770140-rid18936983.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNGJH010000016.1 Salmonella enterica strain PNUSAS367309 SAMN36770140-rid18936983.denovo.17, whole genome shotgun sequence	3381..3642																																																avrA	ABNGJH010000002.1	553636..554505	99.54	870	0						
GCA_032297555.1_PDT001835021.1_genomic.fna	Salmonella_enterica	0.5203	462.293 KB	3	aroC_19,dnaN_20!,dnaN_20!,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	Unknown	4:f,g:-	5	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_19	dnaN	100	100	dnaN_20!	dnaN	100	100	dnaN_20!	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNGJE010000001.1 Salmonella enterica strain PNUSAS367292 SAMN36770159-rid18936663.denovo.01, whole genome shotgun sequence	967342..967779	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNGJE010000009.1 Salmonella enterica strain PNUSAS367292 SAMN36770159-rid18936663.denovo.09, whole genome shotgun sequence	6403..7182	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABNGJE010000036.1 Salmonella enterica strain PNUSAS367292 SAMN36770159-rid18936663.guided.17, whole genome shotgun sequence	39218..39997	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	98.17	438/438	ABNGJE010000039.1 Salmonella enterica strain PNUSAS367292 SAMN36770159-rid18936663.guided.24, whole genome shotgun sequence	8222..8659	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNGJE010000002.1 Salmonella enterica strain PNUSAS367292 SAMN36770159-rid18936663.denovo.02, whole genome shotgun sequence	311934..312356	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNGJE010000037.1 Salmonella enterica strain PNUSAS367292 SAMN36770159-rid18936663.guided.19, whole genome shotgun sequence	29023..29445	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNGJE010000009.1 Salmonella enterica strain PNUSAS367292 SAMN36770159-rid18936663.denovo.09, whole genome shotgun sequence	5059..5898	Sulfamethoxazole	U12338	sul1	100	840/840	ABNGJE010000036.1 Salmonella enterica strain PNUSAS367292 SAMN36770159-rid18936663.guided.17, whole genome shotgun sequence	40502..41341	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNGJE010000020.1 Salmonella enterica strain PNUSAS367292 SAMN36770159-rid18936663.denovo.25, whole genome shotgun sequence	6632..7831	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGJE010000040.1 Salmonella enterica strain PNUSAS367292 SAMN36770159-rid18936663.guided.26, whole genome shotgun sequence	4980..6179	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGJE010000004.1	184265..185134	99.655	870	0						
GCA_032297615.1_PDT001835017.1_genomic.fna	Salmonella_enterica	0.5223	323.637 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGJF010000001.1 Salmonella enterica strain PNUSAS367285 SAMN36770141-rid18936973.denovo.01, whole genome shotgun sequence	91463..91900	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGJF010000049.1 Salmonella enterica strain PNUSAS367285 SAMN36770141-rid18936973.guided.28, whole genome shotgun sequence	2199..2636	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGJF010000003.1	129892..130761	98.966	870	0						
GCA_032297795.1_PDT001834994.1_genomic.fna	Salmonella_enterica	0.5225	253.848 KB	8	aroC_2,dnaN_14,hemD_24,hisD_14,purE_37,sucA_19,thrA_8	86	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_37	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B	Detected the SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGJQ010000001.1 Salmonella enterica strain PNUSAS367250 SAMN36768293-rid18936873.denovo.01, whole genome shotgun sequence	349805..350242	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGJQ010000034.1 Salmonella enterica strain PNUSAS367250 SAMN36768293-rid18936873.guided.30, whole genome shotgun sequence	7681..8118	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032297815.1_PDT001834991.1_genomic.fna	Salmonella_enterica	0.5228	383.718 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGJT010000001.1 Salmonella enterica strain PNUSAS367247 SAMN36768289-rid18936623.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGJT010000038.1 Salmonella enterica strain PNUSAS367247 SAMN36768289-rid18936623.guided.25, whole genome shotgun sequence	1801..2238	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGJT010000003.1	129893..130762	98.851	870	0						
GCA_032297835.1_PDT001834993.1_genomic.fna	Salmonella_enterica	0.5214	375.749 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGJR010000001.1 Salmonella enterica strain PNUSAS367249 SAMN36768294-rid18936863.denovo.01, whole genome shotgun sequence	542757..543194	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGJR010000030.1 Salmonella enterica strain PNUSAS367249 SAMN36768294-rid18936863.guided.25, whole genome shotgun sequence	2905..3342	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGJR010000016.1 Salmonella enterica strain PNUSAS367249 SAMN36768294-rid18936863.denovo.16, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABNGJR010000021.1 Salmonella enterica strain PNUSAS367249 SAMN36768294-rid18936863.denovo.22, whole genome shotgun sequence	3401..3662																																																avrA	ABNGJR010000002.1	174877..175746	99.54	870	0						
GCA_032297855.1_PDT001834992.1_genomic.fna	Salmonella_enterica	0.5226	180.723 KB	8	aroC_83,dnaN_46,hemD_25,hisD_148,purE_33,sucA_23,thrA_63	450	13:d:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_83	dnaN	100	100	dnaN_46	hemD	100	100	hemD_25	hisD	100	100	hisD_148	purE	100	100	purE_33	sucA	100	100	sucA_23	thrA	100	100	thrA_63	13	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Telelkebir		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNGJS010000016.1 Salmonella enterica strain PNUSAS367248 SAMN36768288-rid18936853.denovo.16, whole genome shotgun sequence	81041..81478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNGJS010000050.1 Salmonella enterica strain PNUSAS367248 SAMN36768288-rid18936853.guided.41, whole genome shotgun sequence	2043..2480	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNGJS010000008.1 Salmonella enterica strain PNUSAS367248 SAMN36768288-rid18936853.denovo.08, whole genome shotgun sequence	5453..5875	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNGJS010000048.1 Salmonella enterica strain PNUSAS367248 SAMN36768288-rid18936853.guided.34, whole genome shotgun sequence	5728..6150	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032297875.1_PDT001834990.1_genomic.fna	Salmonella_enterica	0.5206	406.452 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		4	IncFIB(S),IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGJU010000001.1 Salmonella enterica strain PNUSAS367246 SAMN36768290-rid18936843.denovo.01, whole genome shotgun sequence	774552..774989	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGJU010000020.1 Salmonella enterica strain PNUSAS367246 SAMN36768290-rid18936843.denovo.21, whole genome shotgun sequence	9260..10096	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGJU010000020.1 Salmonella enterica strain PNUSAS367246 SAMN36768290-rid18936843.denovo.21, whole genome shotgun sequence	10096..10899	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNGJU010000028.1 Salmonella enterica strain PNUSAS367246 SAMN36768290-rid18936843.guided.20, whole genome shotgun sequence	7213..8049	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGJU010000028.1 Salmonella enterica strain PNUSAS367246 SAMN36768290-rid18936843.guided.20, whole genome shotgun sequence	6410..7213	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNGJU010000032.1 Salmonella enterica strain PNUSAS367246 SAMN36768290-rid18936843.guided.29, whole genome shotgun sequence	1950..2387	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNGJU010000018.1 Salmonella enterica strain PNUSAS367246 SAMN36768290-rid18936843.denovo.18, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNGJU010000031.1 Salmonella enterica strain PNUSAS367246 SAMN36768290-rid18936843.guided.27, whole genome shotgun sequence	3944..4804	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNGJU010000020.1 Salmonella enterica strain PNUSAS367246 SAMN36768290-rid18936843.denovo.21, whole genome shotgun sequence	10960..11775	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNGJU010000028.1 Salmonella enterica strain PNUSAS367246 SAMN36768290-rid18936843.guided.20, whole genome shotgun sequence	5534..6349	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNGJU010000020.1 Salmonella enterica strain PNUSAS367246 SAMN36768290-rid18936843.denovo.21, whole genome shotgun sequence	15288..16487	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGJU010000028.1 Salmonella enterica strain PNUSAS367246 SAMN36768290-rid18936843.guided.20, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGJU010000021.1 Salmonella enterica strain PNUSAS367246 SAMN36768290-rid18936843.denovo.22, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNGJU010000023.1 Salmonella enterica strain PNUSAS367246 SAMN36768290-rid18936843.denovo.26, whole genome shotgun sequence	3402..3663		enterobacteriales	IncN	100	514 / 514	ABNGJU010000018.1 Salmonella enterica strain PNUSAS367246 SAMN36768290-rid18936843.denovo.18, whole genome shotgun sequence	23428..23941		enterobacteriales	IncX1	98.66	374 / 374	ABNGJU010000015.1 Salmonella enterica strain PNUSAS367246 SAMN36768290-rid18936843.denovo.15, whole genome shotgun sequence	6057..6430																																		avrA	ABNGJU010000002.1	553054..553923	99.54	870	0						
GCA_032297915.1_PDT001834961.1_genomic.fna	Salmonella_enterica	0.5229	49.083 KB	29	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	2	aac(6')-Iaa,aac(6')-Iaa,tet(C),tet(C)	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col440I,ColE10	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNGJW010000022.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313721 SAMN36764820-rid18936563.denovo.022, whole genome shotgun sequence	11313..11750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNGJW010000186.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313721 SAMN36764820-rid18936563.guided.050, whole genome shotgun sequence	34834..35271	Amikacin, Tobramycin	NC_003197	tet(C)	99.83	1191/1191	ABNGJW010000116.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313721 SAMN36764820-rid18936563.denovo.119, whole genome shotgun sequence	1430..2620	Doxycycline, Tetracycline	AF055345	tet(C)	99.83	1191/1191	ABNGJW010000189.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313721 SAMN36764820-rid18936563.guided.133, whole genome shotgun sequence	1469..2659	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNGJW010000132.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313721 SAMN36764820-rid18936563.denovo.136, whole genome shotgun sequence	2209..2339	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNGJW010000134.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313721 SAMN36764820-rid18936563.denovo.138, whole genome shotgun sequence	557..687		enterobacteriales	Col440I	94.59	111 / 114	ABNGJW010000130.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313721 SAMN36764820-rid18936563.denovo.134, whole genome shotgun sequence	3175..3285		enterobacteriales	ColE10	100	177 / 177	ABNGJW010000168.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313721 SAMN36764820-rid18936563.denovo.172, whole genome shotgun sequence	695..871																																		avrA	ABNGJW010000032.1	43684..44553	99.54	870	0						
GCA_032297925.1_PDT001834967.1_genomic.fna	Salmonella_enterica	0.5226	61.199 KB	27	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGJV010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313726 SAMN36764825-rid18936573.denovo.028, whole genome shotgun sequence	12435..12872	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGJV010000160.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313726 SAMN36764825-rid18936573.guided.053, whole genome shotgun sequence	21817..22254	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNGJV010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313726 SAMN36764825-rid18936573.denovo.102, whole genome shotgun sequence	8282..8841																																																						avrA	ABNGJV010000041.1	43269..44138	99.655	870	0						
GCA_032297955.1_PDT001834959.1_genomic.fna	Salmonella_enterica	0.5208	61.466 KB	25	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGJX010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313719 SAMN36764814-rid18936553.denovo.012, whole genome shotgun sequence	82001..82438	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGJX010000101.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313719 SAMN36764814-rid18936553.denovo.104, whole genome shotgun sequence	6199..7035	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGJX010000101.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313719 SAMN36764814-rid18936553.denovo.104, whole genome shotgun sequence	7035..7838	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNGJX010000171.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313719 SAMN36764814-rid18936553.guided.051, whole genome shotgun sequence	14098..14535	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGJX010000174.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313719 SAMN36764814-rid18936553.guided.117, whole genome shotgun sequence	2310..3146	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGJX010000174.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313719 SAMN36764814-rid18936553.guided.117, whole genome shotgun sequence	1507..2310	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNGJX010000120.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313719 SAMN36764814-rid18936553.denovo.124, whole genome shotgun sequence	2279..3484	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNGJX010000175.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313719 SAMN36764814-rid18936553.guided.135, whole genome shotgun sequence	2310..3515	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNGJX010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313719 SAMN36764814-rid18936553.denovo.076, whole genome shotgun sequence	17017..17698	enterobacteriales	IncFII	96.95	262 / 261	ABNGJX010000101.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313719 SAMN36764814-rid18936553.denovo.104, whole genome shotgun sequence	5315..5576		enterobacteriales	IncFII	96.95	262 / 261	ABNGJX010000174.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313719 SAMN36764814-rid18936553.guided.117, whole genome shotgun sequence	3769..4030		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNGJX010000140.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313719 SAMN36764814-rid18936553.denovo.145, whole genome shotgun sequence	239..380		enterobacteriales	IncX1	100	373 / 373	ABNGJX010000094.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313719 SAMN36764814-rid18936553.denovo.097, whole genome shotgun sequence	2732..3104																											avrA	ABNGJX010000042.1	39493..40362	99.655	870	0						
GCA_032297975.1_PDT001834957.1_genomic.fna	Salmonella_enterica	0.5204	49.729 KB	30	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGJZ010000017.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313718 SAMN36764813-rid18936533.denovo.017, whole genome shotgun sequence	62403..62840	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGJZ010000064.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313718 SAMN36764813-rid18936533.denovo.066, whole genome shotgun sequence	2754..3590	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNGJZ010000064.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313718 SAMN36764813-rid18936533.denovo.066, whole genome shotgun sequence	1952..2754	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGJZ010000064.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313718 SAMN36764813-rid18936533.denovo.066, whole genome shotgun sequence	1951..2754	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGJZ010000064.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313718 SAMN36764813-rid18936533.denovo.066, whole genome shotgun sequence	1951..2754	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGJZ010000064.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313718 SAMN36764813-rid18936533.denovo.066, whole genome shotgun sequence	1951..2754	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNGJZ010000228.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313718 SAMN36764813-rid18936533.guided.065, whole genome shotgun sequence	14112..14549	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGJZ010000230.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313718 SAMN36764813-rid18936533.guided.116, whole genome shotgun sequence	2795..3631	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNGJZ010000230.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313718 SAMN36764813-rid18936533.guided.116, whole genome shotgun sequence	1993..2795	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGJZ010000230.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313718 SAMN36764813-rid18936533.guided.116, whole genome shotgun sequence	1992..2795	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGJZ010000230.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313718 SAMN36764813-rid18936533.guided.116, whole genome shotgun sequence	1992..2795	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGJZ010000230.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313718 SAMN36764813-rid18936533.guided.116, whole genome shotgun sequence	1992..2795	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNGJZ010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313718 SAMN36764813-rid18936533.denovo.054, whole genome shotgun sequence	12764..13090	enterobacteriales	IncHI2A	99.37	630 / 630	ABNGJZ010000127.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313718 SAMN36764813-rid18936533.denovo.131, whole genome shotgun sequence	1558..2187		enterobacteriales	IncX1	100	373 / 373	ABNGJZ010000161.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313718 SAMN36764813-rid18936533.denovo.165, whole genome shotgun sequence	2153..2525																																									avrA	ABNGJZ010000037.1	39484..40353	99.655	870	0						
GCA_032297995.1_PDT001834955.1_genomic.fna	Salmonella_enterica	0.5196	47.661 KB	33	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	4	IncHI2,IncHI2A,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGKA010000014.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313714 SAMN36764810-rid18936513.denovo.014, whole genome shotgun sequence	58455..58892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGKA010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313714 SAMN36764810-rid18936513.denovo.054, whole genome shotgun sequence	2752..3588	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNGKA010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313714 SAMN36764810-rid18936513.denovo.054, whole genome shotgun sequence	1950..2752	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGKA010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313714 SAMN36764810-rid18936513.denovo.054, whole genome shotgun sequence	1949..2752	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGKA010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313714 SAMN36764810-rid18936513.denovo.054, whole genome shotgun sequence	1949..2752	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGKA010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313714 SAMN36764810-rid18936513.denovo.054, whole genome shotgun sequence	1949..2752	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNGKA010000252.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313714 SAMN36764810-rid18936513.guided.052, whole genome shotgun sequence	2793..3629	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNGKA010000252.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313714 SAMN36764810-rid18936513.guided.052, whole genome shotgun sequence	1991..2793	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGKA010000252.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313714 SAMN36764810-rid18936513.guided.052, whole genome shotgun sequence	1990..2793	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGKA010000252.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313714 SAMN36764810-rid18936513.guided.052, whole genome shotgun sequence	1990..2793	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGKA010000252.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313714 SAMN36764810-rid18936513.guided.052, whole genome shotgun sequence	1990..2793	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNGKA010000253.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313714 SAMN36764810-rid18936513.guided.062, whole genome shotgun sequence	14170..14607	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNGKA010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313714 SAMN36764810-rid18936513.denovo.135, whole genome shotgun sequence	1844..2170	enterobacteriales	IncHI2A	99.52	630 / 630	ABNGKA010000136.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313714 SAMN36764810-rid18936513.denovo.140, whole genome shotgun sequence	1563..2192		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNGKA010000188.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313714 SAMN36764810-rid18936513.denovo.192, whole genome shotgun sequence	104..245		enterobacteriales	IncX1	100	373 / 373	ABNGKA010000178.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313714 SAMN36764810-rid18936513.denovo.182, whole genome shotgun sequence	1870..2242																																		avrA	ABNGKA010000038.1	39484..40353	99.655	870	0						
GCA_032298015.1_PDT001834954.1_genomic.fna	Salmonella_enterica	0.5213	69.022 KB	22	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGKB010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313713 SAMN36764809-rid18936503.denovo.012, whole genome shotgun sequence	11312..11749	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGKB010000173.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313713 SAMN36764809-rid18936503.guided.056, whole genome shotgun sequence	15459..15896	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNGKB010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313713 SAMN36764809-rid18936503.denovo.086, whole genome shotgun sequence	4356..4615	enterobacteriales	IncX1	100	373 / 373	ABNGKB010000140.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313713 SAMN36764809-rid18936503.denovo.143, whole genome shotgun sequence	1151..1523																																																avrA	ABNGKB010000037.1	39484..40353	99.655	870	0						
GCA_032298035.1_PDT001834953.1_genomic.fna	Salmonella_enterica	0.5232	59.32 KB	24	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNGKC010000021.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313711 SAMN36764807-rid18936493.denovo.021, whole genome shotgun sequence	15451..15888	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNGKC010000165.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313711 SAMN36764807-rid18936493.guided.041, whole genome shotgun sequence	24932..25369	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNGKC010000124.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313711 SAMN36764807-rid18936493.denovo.127, whole genome shotgun sequence	557..687	enterobacteriales	ColRNAI	90.08	131 / 130	ABNGKC010000120.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313711 SAMN36764807-rid18936493.denovo.123, whole genome shotgun sequence	3981..4111																																																avrA	ABNGKC010000013.1	81659..82528	99.54	870	0						
GCA_032298055.1_PDT001834958.1_genomic.fna	Salmonella_enterica	0.5235	43.518 KB	33	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aadA1,aac(3)-VIa,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		2	Col(pHAD28),ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGJY010000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313717 SAMN36764812-rid18936543.denovo.018, whole genome shotgun sequence	12384..12821	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNGJY010000097.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313717 SAMN36764812-rid18936543.denovo.100, whole genome shotgun sequence	12419..13321	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNGJY010000097.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313717 SAMN36764812-rid18936543.denovo.100, whole genome shotgun sequence	13485..14276	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNGJY010000204.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313717 SAMN36764812-rid18936543.guided.055, whole genome shotgun sequence	14307..14744	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNGJY010000208.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313717 SAMN36764812-rid18936543.guided.156, whole genome shotgun sequence	3505..4296	Spectinomycin, Streptomycin	JQ414041	aac(3)-VIa	100	903/903	ABNGJY010000209.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313717 SAMN36764812-rid18936543.guided.157, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	sul2	100	816/816	ABNGJY010000088.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313717 SAMN36764812-rid18936543.denovo.091, whole genome shotgun sequence	13256..14071	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNGJY010000097.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313717 SAMN36764812-rid18936543.denovo.100, whole genome shotgun sequence	5580..6419	Sulfamethoxazole	X15024	sul2	100	816/816	ABNGJY010000205.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313717 SAMN36764812-rid18936543.guided.090, whole genome shotgun sequence	13297..14112	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNGJY010000207.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313717 SAMN36764812-rid18936543.guided.144, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABNGJY010000088.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313717 SAMN36764812-rid18936543.denovo.091, whole genome shotgun sequence	16248..17447	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNGJY010000172.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313717 SAMN36764812-rid18936543.denovo.180, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABNGJY010000205.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313717 SAMN36764812-rid18936543.guided.090, whole genome shotgun sequence	16289..17488	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNGJY010000210.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313717 SAMN36764812-rid18936543.guided.178, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNGJY010000150.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313717 SAMN36764812-rid18936543.denovo.155, whole genome shotgun sequence	371..501	enterobacteriales	ColpVC	98.96	193 / 193	ABNGJY010000171.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313717 SAMN36764812-rid18936543.denovo.179, whole genome shotgun sequence	805..997																																																avrA	ABNGJY010000015.1	61657..62526	99.885	870	0						
GCA_032298075.1_PDT001834952.1_genomic.fna	Salmonella_enterica	0.5234	79.721 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGKD010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313712 SAMN36764808-rid18936483.denovo.054, whole genome shotgun sequence	14070..14507	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGKD010000103.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313712 SAMN36764808-rid18936483.guided.053, whole genome shotgun sequence	14096..14533	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGKD010000005.1	105673..106542	99.655	870	0						
GCA_032298095.1_PDT001834951.1_genomic.fna	Salmonella_enterica	0.5237	62.776 KB	23	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGKE010000019.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313708 SAMN36764804-rid18936473.denovo.019, whole genome shotgun sequence	52294..52731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGKE010000145.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313708 SAMN36764804-rid18936473.guided.056, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032298135.1_PDT001834949.1_genomic.fna	Salmonella_enterica	0.522	66.202 KB	23	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGKG010000021.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313656 SAMN36764803-rid18936453.denovo.021, whole genome shotgun sequence	17249..17686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGKG010000154.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313656 SAMN36764803-rid18936453.guided.081, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGKG010000091.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313656 SAMN36764803-rid18936453.denovo.094, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABNGKG010000115.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313656 SAMN36764803-rid18936453.denovo.118, whole genome shotgun sequence	2391..2652		enterobacteriales	IncX1	98.93	374 / 374	ABNGKG010000146.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313656 SAMN36764803-rid18936453.denovo.149, whole genome shotgun sequence	283..656																																									avrA	ABNGKG010000038.1	43587..44456	99.54	870	0						
GCA_032298155.1_PDT001834950.1_genomic.fna	Salmonella_enterica	0.5223	57.219 KB	28	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGKF010000060.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313709 SAMN36764805-rid18936463.denovo.060, whole genome shotgun sequence	12395..12832	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGKF010000153.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313709 SAMN36764805-rid18936463.guided.083, whole genome shotgun sequence	15431..15868	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNGKF010000125.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313709 SAMN36764805-rid18936463.denovo.128, whole genome shotgun sequence	1708..1838																																																						avrA	ABNGKF010000040.1	43669..44538	98.966	870	0						
GCA_032298175.1_PDT001834948.1_genomic.fna	Salmonella_enterica	0.5229	59.3 KB	24	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNGKI010000060.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313710 SAMN36764806-rid18936443.denovo.060, whole genome shotgun sequence	11351..11788	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNGKI010000160.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313710 SAMN36764806-rid18936443.guided.085, whole genome shotgun sequence	15469..15906	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNGKI010000112.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313710 SAMN36764806-rid18936443.denovo.114, whole genome shotgun sequence	4738..4868	enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNGKI010000115.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313710 SAMN36764806-rid18936443.denovo.117, whole genome shotgun sequence	2209..2339		enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNGKI010000117.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313710 SAMN36764806-rid18936443.denovo.119, whole genome shotgun sequence	557..687																																									avrA	ABNGKI010000010.1	84022..84891	99.54	870	0						
GCA_032298195.1_PDT001834947.1_genomic.fna	Salmonella_enterica	0.5223	52.017 KB	30	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),Col(pHAD28),IncC,IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGKJ010000021.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313653 SAMN36764800-rid18936433.denovo.021, whole genome shotgun sequence	13054..13491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGKJ010000171.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313653 SAMN36764800-rid18936433.guided.094, whole genome shotgun sequence	3250..3687	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNGKJ010000060.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313653 SAMN36764800-rid18936433.denovo.060, whole genome shotgun sequence	14271..15416	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNGKJ010000170.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313653 SAMN36764800-rid18936433.guided.085, whole genome shotgun sequence	13901..15046	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNGKJ010000039.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313653 SAMN36764800-rid18936433.denovo.039, whole genome shotgun sequence	3191..4006	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNGKJ010000174.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313653 SAMN36764800-rid18936433.guided.128, whole genome shotgun sequence	160..975	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNGKJ010000039.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313653 SAMN36764800-rid18936433.denovo.039, whole genome shotgun sequence	6183..7382	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGKJ010000174.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313653 SAMN36764800-rid18936433.guided.128, whole genome shotgun sequence	3152..4351	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNGKJ010000130.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313653 SAMN36764800-rid18936433.denovo.135, whole genome shotgun sequence	371..501	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNGKJ010000131.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313653 SAMN36764800-rid18936433.denovo.136, whole genome shotgun sequence	3134..3264		enterobacteriales	IncC	100	417 / 417	ABNGKJ010000119.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313653 SAMN36764800-rid18936433.denovo.122, whole genome shotgun sequence	3281..3697		enterobacteriales	IncX1	98.93	374 / 374	ABNGKJ010000158.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313653 SAMN36764800-rid18936433.denovo.163, whole genome shotgun sequence	245..618																																		avrA	ABNGKJ010000012.1	43808..44677	99.885	870	0						
GCA_032298205.1_PDT001834946.1_genomic.fna	Salmonella_enterica	0.5224	78.121 KB	20	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGKL010000049.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313655 SAMN36764802-rid18936423.denovo.049, whole genome shotgun sequence	14101..14538	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGKL010000120.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313655 SAMN36764802-rid18936423.guided.054, whole genome shotgun sequence	14132..14569	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABNGKL010000005.1	43545..44414	99.54	870	0						
GCA_032298235.1_PDT001834944.1_genomic.fna	Salmonella_enterica	0.5217	47.943 KB	32	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGKK010000017.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313654 SAMN36764801-rid18936403.denovo.017, whole genome shotgun sequence	12474..12911	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGKK010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313654 SAMN36764801-rid18936403.denovo.134, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGKK010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313654 SAMN36764801-rid18936403.denovo.134, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNGKK010000225.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313654 SAMN36764801-rid18936403.guided.059, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGKK010000228.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313654 SAMN36764801-rid18936403.guided.135, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGKK010000228.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313654 SAMN36764801-rid18936403.guided.135, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNGKK010000151.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313654 SAMN36764801-rid18936403.denovo.155, whole genome shotgun sequence	2201..3406	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNGKK010000229.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313654 SAMN36764801-rid18936403.guided.162, whole genome shotgun sequence	1786..2991	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNGKK010000145.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313654 SAMN36764801-rid18936403.denovo.149, whole genome shotgun sequence	2082..2763	enterobacteriales	IncFII	96.95	262 / 261	ABNGKK010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313654 SAMN36764801-rid18936403.denovo.134, whole genome shotgun sequence	1831..2092		enterobacteriales	IncFII	96.95	262 / 261	ABNGKK010000228.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313654 SAMN36764801-rid18936403.guided.135, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABNGKK010000160.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313654 SAMN36764801-rid18936403.denovo.165, whole genome shotgun sequence	1158..1530																																		avrA	ABNGKK010000038.1	39484..40353	99.655	870	0						
GCA_032299515.1_PDT001834866.1_genomic.fna	Salmonella_enterica	0.5225	99.491 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGMC010000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309839 SAMN36764273-rid18935533.denovo.010, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGMC010000112.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309839 SAMN36764273-rid18935533.guided.066, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNGMC010000087.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309839 SAMN36764273-rid18935533.denovo.090, whole genome shotgun sequence	1832..2474	enterobacteriales	IncFII(S)	100	262 / 262	ABNGMC010000066.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309839 SAMN36764273-rid18935533.denovo.068, whole genome shotgun sequence	12544..12805																																																avrA	ABNGMC010000007.1	84021..84889	100	869	0						
GCA_032299535.1_PDT001834865.1_genomic.fna	Salmonella_enterica	0.5221	106.962 KB	16	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(3)-IV,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGMA010000002.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.denovo.002, whole genome shotgun sequence	52457..52894	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNGMA010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.denovo.047, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGMA010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.denovo.047, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNGMA010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.denovo.076, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNGMA010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.denovo.076, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNGMA010000104.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.guided.038, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNGMA010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.guided.078, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGMA010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.guided.078, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNGMA010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.guided.082, whole genome shotgun sequence	247..1272	Hygromycin	V01499	aac(3)-IV	99.87	777/777	ABNGMA010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.guided.097, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aac(3)-IV	100	777/777	ABNGMA010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.guided.098, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aac(3)-IV	99.74	768/777	ABNGMA010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.guided.099, whole genome shotgun sequence	90..857	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNGMA010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.denovo.079, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNGMA010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.guided.077, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNGMA010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.denovo.072, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNGMA010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.guided.071, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNGMA010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.denovo.047, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNGMA010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.guided.078, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNGMA010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.denovo.047, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGMA010000106.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.guided.050, whole genome shotgun sequence	11421..12620	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNGMA010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309837 SAMN36764271-rid18935523.denovo.058, whole genome shotgun sequence	14634..15193																																																						avrA	ABNGMA010000021.1	94091..94960	99.655	870	0						
GCA_032299555.1_PDT001834864.1_genomic.fna	Salmonella_enterica	0.521	140.974 KB	11	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGMB010000004.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309838 SAMN36764272-rid18935513.denovo.04, whole genome shotgun sequence	61977..62414	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNGMB010000051.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309838 SAMN36764272-rid18935513.denovo.54, whole genome shotgun sequence	3195..3997	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGMB010000051.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309838 SAMN36764272-rid18935513.denovo.54, whole genome shotgun sequence	3195..3998	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGMB010000051.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309838 SAMN36764272-rid18935513.denovo.54, whole genome shotgun sequence	3195..3998	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGMB010000051.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309838 SAMN36764272-rid18935513.denovo.54, whole genome shotgun sequence	3195..3998	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNGMB010000051.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309838 SAMN36764272-rid18935513.denovo.54, whole genome shotgun sequence	2455..3195	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNGMB010000051.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309838 SAMN36764272-rid18935513.denovo.54, whole genome shotgun sequence	2455..3195	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABNGMB010000087.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309838 SAMN36764272-rid18935513.guided.45, whole genome shotgun sequence	10602..11039	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNGMB010000089.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309838 SAMN36764272-rid18935513.guided.63, whole genome shotgun sequence	1075..1877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGMB010000089.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309838 SAMN36764272-rid18935513.guided.63, whole genome shotgun sequence	1074..1877	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGMB010000089.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309838 SAMN36764272-rid18935513.guided.63, whole genome shotgun sequence	1074..1877	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGMB010000089.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309838 SAMN36764272-rid18935513.guided.63, whole genome shotgun sequence	1074..1877	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNGMB010000089.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309838 SAMN36764272-rid18935513.guided.63, whole genome shotgun sequence	1877..2617	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNGMB010000089.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309838 SAMN36764272-rid18935513.guided.63, whole genome shotgun sequence	1877..2617	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNGMB010000055.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309838 SAMN36764272-rid18935513.denovo.58, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABNGMB010000045.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309838 SAMN36764272-rid18935513.denovo.47, whole genome shotgun sequence	4946..5442																																																avrA	ABNGMB010000013.1	97614..98483	98.966	870	0						
GCA_032299595.1_PDT001834869.1_genomic.fna	Salmonella_enterica	0.5214	114.776 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGLZ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309860 SAMN36764290-rid18935553.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNGLZ010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309860 SAMN36764290-rid18935553.denovo.51, whole genome shotgun sequence	18514..19305	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGLZ010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309860 SAMN36764290-rid18935553.denovo.51, whole genome shotgun sequence	18514..19305	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNGLZ010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309860 SAMN36764290-rid18935553.guided.24, whole genome shotgun sequence	24930..25367	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNGLZ010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309860 SAMN36764290-rid18935553.guided.63, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGLZ010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309860 SAMN36764290-rid18935553.guided.63, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNGLZ010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309860 SAMN36764290-rid18935553.denovo.51, whole genome shotgun sequence	17170..18009	Sulfamethoxazole	U12338	sul1	100	840/840	ABNGLZ010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309860 SAMN36764290-rid18935553.guided.63, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNGLZ010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309860 SAMN36764290-rid18935553.denovo.51, whole genome shotgun sequence	3454..4653	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGLZ010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309860 SAMN36764290-rid18935553.guided.61, whole genome shotgun sequence	7864..9063	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNGLZ010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309860 SAMN36764290-rid18935553.denovo.48, whole genome shotgun sequence	9109..9668																																																						avrA	ABNGLZ010000003.1	149828..150697	99.655	870	0						
GCA_032301115.1_PDT001834659.1_genomic.fna	Salmonella_enterica	0.5206	256.514 KB	7	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYKO010000004.1 TPA_asm: Salmonella enterica isolate 17-MIK152725 SAMEA14282194-rid18933653.denovo.04, whole genome shotgun sequence	85196..85633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYKO010000053.1 TPA_asm: Salmonella enterica isolate 17-MIK152725 SAMEA14282194-rid18933653.guided.22, whole genome shotgun sequence	14404..14841	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYKO010000026.1 TPA_asm: Salmonella enterica isolate 17-MIK152725 SAMEA14282194-rid18933653.denovo.27, whole genome shotgun sequence	18825..19467	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYKO010000026.1 TPA_asm: Salmonella enterica isolate 17-MIK152725 SAMEA14282194-rid18933653.denovo.27, whole genome shotgun sequence	28949..29208																																																avrA	DAPYKO010000001.1	94780..95649	99.77	870	0						
GCA_032301135.1_PDT001834658.1_genomic.fna	Salmonella_enterica	0.5206	207.294 KB	8	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYKP010000009.1 TPA_asm: Salmonella enterica isolate 17-MIK152726 SAMEA14282195-rid18933643.denovo.09, whole genome shotgun sequence	85196..85633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYKP010000060.1 TPA_asm: Salmonella enterica isolate 17-MIK152726 SAMEA14282195-rid18933643.guided.33, whole genome shotgun sequence	19490..19927	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYKP010000027.1 TPA_asm: Salmonella enterica isolate 17-MIK152726 SAMEA14282195-rid18933643.denovo.28, whole genome shotgun sequence	16411..17053	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYKP010000027.1 TPA_asm: Salmonella enterica isolate 17-MIK152726 SAMEA14282195-rid18933643.denovo.28, whole genome shotgun sequence	26535..26794																																																avrA	DAPYKP010000001.1	94780..95649	99.77	870	0						
GCA_032301275.1_PDT001834655.1_genomic.fna	Salmonella_enterica	0.5147	168.052 KB	11	aroC_255,dnaN_26,hemD_30,hisD_360,purE_21,sucA_87,thrA_28	9322	50:z52:z35	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_255	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_360	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	50	z52	z35	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 50:z52:z35		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAPYKS010000001.1 TPA_asm: Salmonella enterica isolate 17-MIK154134 SAMEA14282198-rid18933623.denovo.001, whole genome shotgun sequence	117386..117823	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAPYKS010000106.1 TPA_asm: Salmonella enterica isolate 17-MIK154134 SAMEA14282198-rid18933623.guided.034, whole genome shotgun sequence	11553..11990	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYKS010000004.1	89751..90620	96.552	870	0						
GCA_032301295.1_PDT001834654.1_genomic.fna	Salmonella_enterica	0.5208	178.582 KB	9	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYKT010000008.1 TPA_asm: Salmonella enterica isolate 17-MIK154135 SAMEA14282199-rid18933613.denovo.08, whole genome shotgun sequence	85196..85633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYKT010000068.1 TPA_asm: Salmonella enterica isolate 17-MIK154135 SAMEA14282199-rid18933613.guided.26, whole genome shotgun sequence	24391..24828	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYKT010000032.1 TPA_asm: Salmonella enterica isolate 17-MIK154135 SAMEA14282199-rid18933613.denovo.33, whole genome shotgun sequence	18825..19467	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYKT010000032.1 TPA_asm: Salmonella enterica isolate 17-MIK154135 SAMEA14282199-rid18933613.denovo.33, whole genome shotgun sequence	28949..29208																																																avrA	DAPYKT010000001.1	94780..95649	99.77	870	0						
GCA_032301315.1_PDT001834650.1_genomic.fna	Salmonella_enterica	0.5112	151.207 KB	12	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	-:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	-	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb -:r:z	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPYKX010000001.1 TPA_asm: Salmonella enterica isolate 17-MIK154142 SAMEA14282203-rid18933583.denovo.01, whole genome shotgun sequence	81006..81443	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPYKX010000096.1 TPA_asm: Salmonella enterica isolate 17-MIK154142 SAMEA14282203-rid18933583.guided.54, whole genome shotgun sequence	611..1048	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYKX010000019.1	38504..39373	96.437	870	0						
GCA_032301335.1_PDT001834651.1_genomic.fna	Salmonella_enterica	0.5208	236.168 KB	7	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYKW010000004.1 TPA_asm: Salmonella enterica isolate 17-MIK154141 SAMEA14282202-rid18933593.denovo.04, whole genome shotgun sequence	85186..85623	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYKW010000059.1 TPA_asm: Salmonella enterica isolate 17-MIK154141 SAMEA14282202-rid18933593.guided.32, whole genome shotgun sequence	21265..21702	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYKW010000026.1 TPA_asm: Salmonella enterica isolate 17-MIK154141 SAMEA14282202-rid18933593.denovo.26, whole genome shotgun sequence	18829..19471	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYKW010000026.1 TPA_asm: Salmonella enterica isolate 17-MIK154141 SAMEA14282202-rid18933593.denovo.26, whole genome shotgun sequence	28953..29212																																																avrA	DAPYKW010000001.1	94780..95649	99.77	870	0						
GCA_032301355.1_PDT001834649.1_genomic.fna	Salmonella_enterica	0.5208	256.515 KB	7	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYKY010000004.1 TPA_asm: Salmonella enterica isolate 17-MIK154143 SAMEA14282204-rid18933573.denovo.04, whole genome shotgun sequence	85196..85633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYKY010000054.1 TPA_asm: Salmonella enterica isolate 17-MIK154143 SAMEA14282204-rid18933573.guided.36, whole genome shotgun sequence	5967..6404	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYKY010000027.1 TPA_asm: Salmonella enterica isolate 17-MIK154143 SAMEA14282204-rid18933573.denovo.27, whole genome shotgun sequence	18825..19467	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYKY010000027.1 TPA_asm: Salmonella enterica isolate 17-MIK154143 SAMEA14282204-rid18933573.denovo.27, whole genome shotgun sequence	28949..29208																																																avrA	DAPYKY010000001.1	97477..98346	99.77	870	0						
GCA_032301375.1_PDT001834648.1_genomic.fna	Salmonella_enterica	0.5209	178.584 KB	9	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYKZ010000008.1 TPA_asm: Salmonella enterica isolate 17-MIK154144 SAMEA14282205-rid18933563.denovo.08, whole genome shotgun sequence	85196..85633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYKZ010000070.1 TPA_asm: Salmonella enterica isolate 17-MIK154144 SAMEA14282205-rid18933563.guided.30, whole genome shotgun sequence	41790..42227	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYKZ010000031.1 TPA_asm: Salmonella enterica isolate 17-MIK154144 SAMEA14282205-rid18933563.denovo.32, whole genome shotgun sequence	18825..19467	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYKZ010000031.1 TPA_asm: Salmonella enterica isolate 17-MIK154144 SAMEA14282205-rid18933563.denovo.32, whole genome shotgun sequence	28949..29208																																																avrA	DAPYKZ010000001.1	94780..95649	99.77	870	0						
GCA_032301395.1_PDT001834647.1_genomic.fna	Salmonella_enterica	0.5205	236.168 KB	7	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYLA010000004.1 TPA_asm: Salmonella enterica isolate 17-MIK154145 SAMEA14282206-rid18932143.denovo.04, whole genome shotgun sequence	85186..85623	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYLA010000061.1 TPA_asm: Salmonella enterica isolate 17-MIK154145 SAMEA14282206-rid18932143.guided.15, whole genome shotgun sequence	38674..39111	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYLA010000026.1 TPA_asm: Salmonella enterica isolate 17-MIK154145 SAMEA14282206-rid18932143.denovo.27, whole genome shotgun sequence	18829..19471	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYLA010000026.1 TPA_asm: Salmonella enterica isolate 17-MIK154145 SAMEA14282206-rid18932143.denovo.27, whole genome shotgun sequence	28953..29212																																																avrA	DAPYLA010000001.1	94780..95649	99.77	870	0						
GCA_032301415.1_PDT001834653.1_genomic.fna	Salmonella_enterica	0.521	205.911 KB	8	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYKU010000009.1 TPA_asm: Salmonella enterica isolate 17-MIK154138 SAMEA14282200-rid18933603.denovo.09, whole genome shotgun sequence	85196..85633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYKU010000068.1 TPA_asm: Salmonella enterica isolate 17-MIK154138 SAMEA14282200-rid18933603.guided.38, whole genome shotgun sequence	10251..10688	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYKU010000030.1 TPA_asm: Salmonella enterica isolate 17-MIK154138 SAMEA14282200-rid18933603.denovo.30, whole genome shotgun sequence	18829..19471	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYKU010000030.1 TPA_asm: Salmonella enterica isolate 17-MIK154138 SAMEA14282200-rid18933603.denovo.30, whole genome shotgun sequence	28953..29212																																																avrA	DAPYKU010000001.1	94780..95649	99.77	870	0						
GCA_032301425.1_PDT001834646.1_genomic.fna	Salmonella_enterica	0.5202	180.779 KB	8	aroC_15,dnaN_4,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	255	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_4	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYLB010000007.1 TPA_asm: Salmonella enterica isolate 17-MIK193266 SAMEA14282207-rid18933553.denovo.07, whole genome shotgun sequence	73108..73545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYLB010000063.1 TPA_asm: Salmonella enterica isolate 17-MIK193266 SAMEA14282207-rid18933553.guided.16, whole genome shotgun sequence	42419..42856	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYLB010000028.1 TPA_asm: Salmonella enterica isolate 17-MIK193266 SAMEA14282207-rid18933553.denovo.30, whole genome shotgun sequence	18834..19476	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYLB010000028.1 TPA_asm: Salmonella enterica isolate 17-MIK193266 SAMEA14282207-rid18933553.denovo.30, whole genome shotgun sequence	28959..29218																																																avrA	DAPYLB010000001.1	507795..508664	99.77	870	0						
GCA_032301455.1_PDT001834652.1_genomic.fna	Salmonella_enterica	0.5207	224.532 KB	7	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYKV010000009.1 TPA_asm: Salmonella enterica isolate 17-MIK154140 SAMEA14282201-rid18932153.denovo.09, whole genome shotgun sequence	85186..85623	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYKV010000058.1 TPA_asm: Salmonella enterica isolate 17-MIK154140 SAMEA14282201-rid18932153.guided.23, whole genome shotgun sequence	11467..11904	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYKV010000027.1 TPA_asm: Salmonella enterica isolate 17-MIK154140 SAMEA14282201-rid18932153.denovo.28, whole genome shotgun sequence	18829..19471	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYKV010000027.1 TPA_asm: Salmonella enterica isolate 17-MIK154140 SAMEA14282201-rid18932153.denovo.28, whole genome shotgun sequence	28953..29212																																																avrA	DAPYKV010000001.1	94780..95649	99.77	870	0						
GCA_032301475.1_PDT001834642.1_genomic.fna	Salmonella_enterica	0.5128	154.305 KB	11	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	-:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	-	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb -:r:z	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPYLF010000001.1 TPA_asm: Salmonella enterica isolate 09-BKT079406 SAMEA14282168-rid18932123.denovo.01, whole genome shotgun sequence	97855..98292	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.07	409/438	DAPYLF010000080.1 TPA_asm: Salmonella enterica isolate 09-BKT079406 SAMEA14282168-rid18932123.guided.76, whole genome shotgun sequence	1..409	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYLF010000004.1	38394..39263	96.437	870	0						
GCA_032301495.1_PDT001834643.1_genomic.fna	Salmonella_enterica	0.5205	137.351 KB	12	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYLE010000006.1 TPA_asm: Salmonella enterica isolate 08-VLT001050 SAMEA14282167-rid18933533.denovo.006, whole genome shotgun sequence	85196..85633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYLE010000102.1 TPA_asm: Salmonella enterica isolate 08-VLT001050 SAMEA14282167-rid18933533.guided.013, whole genome shotgun sequence	42263..42700	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYLE010000039.1 TPA_asm: Salmonella enterica isolate 08-VLT001050 SAMEA14282167-rid18933533.denovo.041, whole genome shotgun sequence	16310..16952	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYLE010000039.1 TPA_asm: Salmonella enterica isolate 08-VLT001050 SAMEA14282167-rid18933533.denovo.041, whole genome shotgun sequence	26434..26693																																																avrA	DAPYLE010000001.1	94780..95649	99.77	870	0						
GCA_032301515.1_PDT001834640.1_genomic.fna	Salmonella_enterica	0.5211	163.91 KB	9	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYLH010000008.1 TPA_asm: Salmonella enterica isolate 09-VLT000795 SAMEA14282170-rid18933513.denovo.08, whole genome shotgun sequence	85186..85623	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYLH010000057.1 TPA_asm: Salmonella enterica isolate 09-VLT000795 SAMEA14282170-rid18933513.guided.46, whole genome shotgun sequence	1600..2037	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYLH010000031.1 TPA_asm: Salmonella enterica isolate 09-VLT000795 SAMEA14282170-rid18933513.denovo.31, whole genome shotgun sequence	16310..16952	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYLH010000031.1 TPA_asm: Salmonella enterica isolate 09-VLT000795 SAMEA14282170-rid18933513.denovo.31, whole genome shotgun sequence	26434..26693																																																avrA	DAPYLH010000003.1	94780..95649	99.77	870	0						
GCA_032301535.1_PDT001834641.1_genomic.fna	Salmonella_enterica	0.5105	182.201 KB	10	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	-:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	-	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb -:r:z	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPYLG010000001.1 TPA_asm: Salmonella enterica isolate 09-BKT081734 SAMEA14282169-rid18933523.denovo.01, whole genome shotgun sequence	77844..78281	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPYLG010000080.1 TPA_asm: Salmonella enterica isolate 09-BKT081734 SAMEA14282169-rid18933523.guided.35, whole genome shotgun sequence	28388..28825	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYLG010000014.1	90869..91738	96.437	870	0						
GCA_032301555.1_PDT001834639.1_genomic.fna	Salmonella_enterica	0.5228	224.475 KB	9	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	2	gyrA_p.D87N,parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAPYLI010000005.1 TPA_asm: Salmonella enterica isolate 10-BKT000715 SAMEA14282171-rid18933503.denovo.05, whole genome shotgun sequence	145265..145702	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAPYLI010000044.1 TPA_asm: Salmonella enterica isolate 10-BKT000715 SAMEA14282171-rid18933503.denovo.48, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAPYLI010000044.1 TPA_asm: Salmonella enterica isolate 10-BKT000715 SAMEA14282171-rid18933503.denovo.48, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAPYLI010000044.1 TPA_asm: Salmonella enterica isolate 10-BKT000715 SAMEA14282171-rid18933503.denovo.48, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAPYLI010000044.1 TPA_asm: Salmonella enterica isolate 10-BKT000715 SAMEA14282171-rid18933503.denovo.48, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAPYLI010000044.1 TPA_asm: Salmonella enterica isolate 10-BKT000715 SAMEA14282171-rid18933503.denovo.48, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	DAPYLI010000068.1 TPA_asm: Salmonella enterica isolate 10-BKT000715 SAMEA14282171-rid18933503.guided.42, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAPYLI010000070.1 TPA_asm: Salmonella enterica isolate 10-BKT000715 SAMEA14282171-rid18933503.guided.47, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAPYLI010000070.1 TPA_asm: Salmonella enterica isolate 10-BKT000715 SAMEA14282171-rid18933503.guided.47, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAPYLI010000070.1 TPA_asm: Salmonella enterica isolate 10-BKT000715 SAMEA14282171-rid18933503.guided.47, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAPYLI010000070.1 TPA_asm: Salmonella enterica isolate 10-BKT000715 SAMEA14282171-rid18933503.guided.47, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAPYLI010000070.1 TPA_asm: Salmonella enterica isolate 10-BKT000715 SAMEA14282171-rid18933503.guided.47, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	DAPYLI010000045.1 TPA_asm: Salmonella enterica isolate 10-BKT000715 SAMEA14282171-rid18933503.denovo.49, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAPYLI010000071.1 TPA_asm: Salmonella enterica isolate 10-BKT000715 SAMEA14282171-rid18933503.guided.52, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	ColpVC	100	193 / 193	DAPYLI010000053.1 TPA_asm: Salmonella enterica isolate 10-BKT000715 SAMEA14282171-rid18933503.denovo.58, whole genome shotgun sequence	81..273																																																						avrA	DAPYLI010000002.1	39459..40328	99.655	870	0						
GCA_032301575.1_PDT001834638.1_genomic.fna	Salmonella_enterica	0.5107	245.84 KB	9	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	-:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	-	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb -:r:z	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPYLK010000001.1 TPA_asm: Salmonella enterica isolate 10-BKT043848 SAMEA14282172-rid18933493.denovo.01, whole genome shotgun sequence	81006..81443	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPYLK010000094.1 TPA_asm: Salmonella enterica isolate 10-BKT043848 SAMEA14282172-rid18933493.guided.22, whole genome shotgun sequence	42160..42597	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYLK010000013.1	90869..91738	96.437	870	0						
GCA_032301595.1_PDT001834637.1_genomic.fna	Salmonella_enterica	0.5205	205.919 KB	8	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYLJ010000003.1 TPA_asm: Salmonella enterica isolate 11-VLT003860 SAMEA14282173-rid18932113.denovo.03, whole genome shotgun sequence	85196..85633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYLJ010000067.1 TPA_asm: Salmonella enterica isolate 11-VLT003860 SAMEA14282173-rid18932113.guided.19, whole genome shotgun sequence	41790..42227	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYLJ010000029.1 TPA_asm: Salmonella enterica isolate 11-VLT003860 SAMEA14282173-rid18932113.denovo.31, whole genome shotgun sequence	16310..16952	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYLJ010000029.1 TPA_asm: Salmonella enterica isolate 11-VLT003860 SAMEA14282173-rid18932113.denovo.31, whole genome shotgun sequence	26434..26693																																																avrA	DAPYLJ010000001.1	94780..95649	99.77	870	0						
GCA_032301615.1_PDT001834636.1_genomic.fna	Salmonella_enterica	0.5128	248.67 KB	9	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	42:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	42	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 42:r:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPYLL010000003.1 TPA_asm: Salmonella enterica isolate 12-BKT002146 SAMEA14282174-rid18933483.denovo.003, whole genome shotgun sequence	128688..129125	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPYLL010000107.1 TPA_asm: Salmonella enterica isolate 12-BKT002146 SAMEA14282174-rid18933483.guided.036, whole genome shotgun sequence	8648..9085	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYLL010000007.1	89815..90684	96.437	870	0						
GCA_032301635.1_PDT001834635.1_genomic.fna	Salmonella_enterica	0.522	217.254 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAPYLM010000005.1 TPA_asm: Salmonella enterica isolate 12-BKT002147 SAMEA14282175-rid18933473.denovo.05, whole genome shotgun sequence	145476..145913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAPYLM010000069.1 TPA_asm: Salmonella enterica isolate 12-BKT002147 SAMEA14282175-rid18933473.guided.42, whole genome shotgun sequence	3876..4313	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	98.96	193 / 193	DAPYLM010000051.1 TPA_asm: Salmonella enterica isolate 12-BKT002147 SAMEA14282175-rid18933473.denovo.54, whole genome shotgun sequence	806..998	enterobacteriales	IncFIB(S)	100	643 / 643	DAPYLM010000015.1 TPA_asm: Salmonella enterica isolate 12-BKT002147 SAMEA14282175-rid18933473.denovo.15, whole genome shotgun sequence	79882..80524		enterobacteriales	IncFII(S)	100	262 / 262	DAPYLM010000015.1 TPA_asm: Salmonella enterica isolate 12-BKT002147 SAMEA14282175-rid18933473.denovo.15, whole genome shotgun sequence	1781..2042																																									avrA	DAPYLM010000001.1	481542..482411	99.885	870	0						
GCA_032301655.1_PDT001834634.1_genomic.fna	Salmonella_enterica	0.512	248.93 KB	9	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	42:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	42	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 42:r:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPYLN010000003.1 TPA_asm: Salmonella enterica isolate 12-BKT002148 SAMEA14282176-rid18932103.denovo.03, whole genome shotgun sequence	119634..120071	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPYLN010000092.1 TPA_asm: Salmonella enterica isolate 12-BKT002148 SAMEA14282176-rid18932103.guided.42, whole genome shotgun sequence	1020..1457	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYLN010000007.1	89680..90549	96.437	870	0						
GCA_032301675.1_PDT001834632.1_genomic.fna	Salmonella_enterica	0.5217	280.265 KB	6	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAPYLP010000001.1 TPA_asm: Salmonella enterica isolate 12-BKT034358 SAMEA14282178-rid18932093.denovo.01, whole genome shotgun sequence	487931..488368	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAPYLP010000030.1 TPA_asm: Salmonella enterica isolate 12-BKT034358 SAMEA14282178-rid18932093.denovo.34, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAPYLP010000030.1 TPA_asm: Salmonella enterica isolate 12-BKT034358 SAMEA14282178-rid18932093.denovo.34, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAPYLP010000030.1 TPA_asm: Salmonella enterica isolate 12-BKT034358 SAMEA14282178-rid18932093.denovo.34, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAPYLP010000030.1 TPA_asm: Salmonella enterica isolate 12-BKT034358 SAMEA14282178-rid18932093.denovo.34, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAPYLP010000030.1 TPA_asm: Salmonella enterica isolate 12-BKT034358 SAMEA14282178-rid18932093.denovo.34, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	DAPYLP010000049.1 TPA_asm: Salmonella enterica isolate 12-BKT034358 SAMEA14282178-rid18932093.guided.28, whole genome shotgun sequence	22212..22649	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAPYLP010000051.1 TPA_asm: Salmonella enterica isolate 12-BKT034358 SAMEA14282178-rid18932093.guided.33, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAPYLP010000051.1 TPA_asm: Salmonella enterica isolate 12-BKT034358 SAMEA14282178-rid18932093.guided.33, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAPYLP010000051.1 TPA_asm: Salmonella enterica isolate 12-BKT034358 SAMEA14282178-rid18932093.guided.33, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAPYLP010000051.1 TPA_asm: Salmonella enterica isolate 12-BKT034358 SAMEA14282178-rid18932093.guided.33, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAPYLP010000051.1 TPA_asm: Salmonella enterica isolate 12-BKT034358 SAMEA14282178-rid18932093.guided.33, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	DAPYLP010000031.1 TPA_asm: Salmonella enterica isolate 12-BKT034358 SAMEA14282178-rid18932093.denovo.35, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAPYLP010000052.1 TPA_asm: Salmonella enterica isolate 12-BKT034358 SAMEA14282178-rid18932093.guided.38, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	DAPYLP010000036.1 TPA_asm: Salmonella enterica isolate 12-BKT034358 SAMEA14282178-rid18932093.denovo.41, whole genome shotgun sequence	856..986																																																						avrA	DAPYLP010000005.1	39546..40415	99.655	870	0						
GCA_032301695.1_PDT001834633.1_genomic.fna	Salmonella_enterica	0.5206	178.574 KB	9	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYLO010000008.1 TPA_asm: Salmonella enterica isolate 12-BKT021322 SAMEA14282177-rid18933463.denovo.08, whole genome shotgun sequence	85196..85633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYLO010000067.1 TPA_asm: Salmonella enterica isolate 12-BKT021322 SAMEA14282177-rid18933463.guided.24, whole genome shotgun sequence	20922..21359	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYLO010000032.1 TPA_asm: Salmonella enterica isolate 12-BKT021322 SAMEA14282177-rid18933463.denovo.33, whole genome shotgun sequence	18829..19471	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYLO010000032.1 TPA_asm: Salmonella enterica isolate 12-BKT021322 SAMEA14282177-rid18933463.denovo.33, whole genome shotgun sequence	28953..29212																																																avrA	DAPYLO010000001.1	94780..95649	99.77	870	0						
GCA_032301705.1_PDT001834631.1_genomic.fna	Salmonella_enterica	0.5118	190.638 KB	10	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	-:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	-	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb -:r:z	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPYLQ010000001.1 TPA_asm: Salmonella enterica isolate 12-FOD001463 SAMEA14282179-rid18933453.denovo.001, whole genome shotgun sequence	406848..407285	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPYLQ010000112.1 TPA_asm: Salmonella enterica isolate 12-FOD001463 SAMEA14282179-rid18933453.guided.033, whole genome shotgun sequence	39942..40379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYLQ010000008.1	38393..39262	96.437	870	0						
GCA_032301735.1_PDT001834630.1_genomic.fna	Salmonella_enterica	0.5103	179.903 KB	10	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	-:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	-	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb -:r:z	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPYLR010000001.1 TPA_asm: Salmonella enterica isolate 12-FOD003270 SAMEA14282180-rid18933443.denovo.01, whole genome shotgun sequence	91050..91487	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPYLR010000082.1 TPA_asm: Salmonella enterica isolate 12-FOD003270 SAMEA14282180-rid18933443.guided.26, whole genome shotgun sequence	53558..53995	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYLR010000009.1	38515..39384	96.437	870	0						
GCA_032301745.1_PDT001834629.1_genomic.fna	Salmonella_enterica	0.5122	204.85 KB	9	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	-:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	-	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb -:r:z	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	DAPYLS010000001.1 TPA_asm: Salmonella enterica isolate 12-FOD003942 SAMEA14282181-rid18933433.denovo.001, whole genome shotgun sequence	461267..461704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	DAPYLS010000108.1 TPA_asm: Salmonella enterica isolate 12-FOD003942 SAMEA14282181-rid18933433.guided.020, whole genome shotgun sequence	50745..51182	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	DAPYLS010000028.1 TPA_asm: Salmonella enterica isolate 12-FOD003942 SAMEA14282181-rid18933433.denovo.030, whole genome shotgun sequence	48836..49369																																																						avrA	DAPYLS010000014.1	89817..90686	96.322	870	0						
GCA_032301775.1_PDT001834628.1_genomic.fna	Salmonella_enterica	0.5116	189.556 KB	10	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	-:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	-	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb -:r:z	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPYLT010000001.1 TPA_asm: Salmonella enterica isolate 14-VLT001302 SAMEA14282182-rid18933423.denovo.001, whole genome shotgun sequence	81006..81443	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPYLT010000102.1 TPA_asm: Salmonella enterica isolate 14-VLT001302 SAMEA14282182-rid18933423.guided.020, whole genome shotgun sequence	50382..50819	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYLT010000013.1	89816..90685	96.437	870	0						
GCA_032301795.1_PDT001834626.1_genomic.fna	Salmonella_enterica	0.5112	265.403 KB	8	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	-:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	-	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb -:r:z	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPYLV010000002.1 TPA_asm: Salmonella enterica isolate 17-MIK152714 SAMEA14282184-rid18933413.denovo.002, whole genome shotgun sequence	91050..91487	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPYLV010000099.1 TPA_asm: Salmonella enterica isolate 17-MIK152714 SAMEA14282184-rid18933413.guided.030, whole genome shotgun sequence	39942..40379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYLV010000008.1	90869..91738	96.437	870	0						
GCA_032301815.1_PDT001834627.1_genomic.fna	Salmonella_enterica	0.5202	203.579 KB	7	aroC_15,dnaN_4,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	255	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_4	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYLU010000007.1 TPA_asm: Salmonella enterica isolate 15-BKT056815 SAMEA14282183-rid18932083.denovo.07, whole genome shotgun sequence	73108..73545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYLU010000061.1 TPA_asm: Salmonella enterica isolate 15-BKT056815 SAMEA14282183-rid18932083.guided.19, whole genome shotgun sequence	16445..16882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYLU010000027.1 TPA_asm: Salmonella enterica isolate 15-BKT056815 SAMEA14282183-rid18932083.denovo.29, whole genome shotgun sequence	16319..16961	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYLU010000027.1 TPA_asm: Salmonella enterica isolate 15-BKT056815 SAMEA14282183-rid18932083.denovo.29, whole genome shotgun sequence	26444..26703																																																avrA	DAPYLU010000001.1	507809..508678	99.77	870	0						
GCA_032301835.1_PDT001834625.1_genomic.fna	Salmonella_enterica	0.5109	188.105 KB	10	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	-:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	-	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb -:r:z	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPYLW010000001.1 TPA_asm: Salmonella enterica isolate 17-MIK152715 SAMEA14282185-rid18933403.denovo.001, whole genome shotgun sequence	81006..81443	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPYLW010000101.1 TPA_asm: Salmonella enterica isolate 17-MIK152715 SAMEA14282185-rid18933403.guided.030, whole genome shotgun sequence	19451..19888	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYLW010000013.1	89816..90685	96.437	870	0						
GCA_032301855.1_PDT001834624.1_genomic.fna	Salmonella_enterica	0.5208	207.469 KB	8	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYLX010000009.1 TPA_asm: Salmonella enterica isolate 17-MIK152716 SAMEA14282186-rid18932073.denovo.09, whole genome shotgun sequence	85196..85633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYLX010000058.1 TPA_asm: Salmonella enterica isolate 17-MIK152716 SAMEA14282186-rid18932073.guided.38, whole genome shotgun sequence	5890..6327	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYLX010000028.1 TPA_asm: Salmonella enterica isolate 17-MIK152716 SAMEA14282186-rid18932073.denovo.29, whole genome shotgun sequence	16310..16952	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYLX010000028.1 TPA_asm: Salmonella enterica isolate 17-MIK152716 SAMEA14282186-rid18932073.denovo.29, whole genome shotgun sequence	26434..26693																																																avrA	DAPYLX010000001.1	97477..98346	99.77	870	0						
GCA_032301875.1_PDT001834623.1_genomic.fna	Salmonella_enterica	0.5216	319.516 KB	6	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAPYLY010000004.1 TPA_asm: Salmonella enterica isolate 17-MIK152717 SAMEA14282187-rid18933393.denovo.04, whole genome shotgun sequence	223356..223793	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAPYLY010000031.1 TPA_asm: Salmonella enterica isolate 17-MIK152717 SAMEA14282187-rid18933393.denovo.35, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAPYLY010000031.1 TPA_asm: Salmonella enterica isolate 17-MIK152717 SAMEA14282187-rid18933393.denovo.35, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAPYLY010000031.1 TPA_asm: Salmonella enterica isolate 17-MIK152717 SAMEA14282187-rid18933393.denovo.35, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAPYLY010000031.1 TPA_asm: Salmonella enterica isolate 17-MIK152717 SAMEA14282187-rid18933393.denovo.35, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAPYLY010000031.1 TPA_asm: Salmonella enterica isolate 17-MIK152717 SAMEA14282187-rid18933393.denovo.35, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	DAPYLY010000051.1 TPA_asm: Salmonella enterica isolate 17-MIK152717 SAMEA14282187-rid18933393.guided.18, whole genome shotgun sequence	68462..68899	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAPYLY010000054.1 TPA_asm: Salmonella enterica isolate 17-MIK152717 SAMEA14282187-rid18933393.guided.34, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAPYLY010000054.1 TPA_asm: Salmonella enterica isolate 17-MIK152717 SAMEA14282187-rid18933393.guided.34, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAPYLY010000054.1 TPA_asm: Salmonella enterica isolate 17-MIK152717 SAMEA14282187-rid18933393.guided.34, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAPYLY010000054.1 TPA_asm: Salmonella enterica isolate 17-MIK152717 SAMEA14282187-rid18933393.guided.34, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAPYLY010000054.1 TPA_asm: Salmonella enterica isolate 17-MIK152717 SAMEA14282187-rid18933393.guided.34, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	DAPYLY010000032.1 TPA_asm: Salmonella enterica isolate 17-MIK152717 SAMEA14282187-rid18933393.denovo.36, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAPYLY010000055.1 TPA_asm: Salmonella enterica isolate 17-MIK152717 SAMEA14282187-rid18933393.guided.39, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	DAPYLY010000037.1 TPA_asm: Salmonella enterica isolate 17-MIK152717 SAMEA14282187-rid18933393.denovo.42, whole genome shotgun sequence	856..986																																																						avrA	DAPYLY010000001.1	558689..559558	99.655	870	0						
GCA_032301895.1_PDT001834620.1_genomic.fna	Salmonella_enterica	0.5145	159.699 KB	12	aroC_255,dnaN_26,hemD_30,hisD_360,purE_21,sucA_87,thrA_28	9322	50:z52:z35	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_255	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_360	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	50	z52	z35	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 50:z52:z35		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAPYMB010000001.1 TPA_asm: Salmonella enterica isolate 17-MIK152720 SAMEA14282190-rid18932053.denovo.001, whole genome shotgun sequence	117386..117823	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAPYMB010000102.1 TPA_asm: Salmonella enterica isolate 17-MIK152720 SAMEA14282190-rid18932053.guided.032, whole genome shotgun sequence	39822..40259	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYMB010000004.1	89751..90620	96.552	870	0						
GCA_032301915.1_PDT001834621.1_genomic.fna	Salmonella_enterica	0.5219	198.19 KB	8	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAPYMA010000002.1 TPA_asm: Salmonella enterica isolate 17-MIK152719 SAMEA14282189-rid18933383.denovo.02, whole genome shotgun sequence	223356..223793	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAPYMA010000037.1 TPA_asm: Salmonella enterica isolate 17-MIK152719 SAMEA14282189-rid18933383.denovo.41, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAPYMA010000037.1 TPA_asm: Salmonella enterica isolate 17-MIK152719 SAMEA14282189-rid18933383.denovo.41, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAPYMA010000037.1 TPA_asm: Salmonella enterica isolate 17-MIK152719 SAMEA14282189-rid18933383.denovo.41, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAPYMA010000037.1 TPA_asm: Salmonella enterica isolate 17-MIK152719 SAMEA14282189-rid18933383.denovo.41, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAPYMA010000037.1 TPA_asm: Salmonella enterica isolate 17-MIK152719 SAMEA14282189-rid18933383.denovo.41, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	DAPYMA010000060.1 TPA_asm: Salmonella enterica isolate 17-MIK152719 SAMEA14282189-rid18933383.guided.26, whole genome shotgun sequence	39049..39486	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAPYMA010000063.1 TPA_asm: Salmonella enterica isolate 17-MIK152719 SAMEA14282189-rid18933383.guided.40, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAPYMA010000063.1 TPA_asm: Salmonella enterica isolate 17-MIK152719 SAMEA14282189-rid18933383.guided.40, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAPYMA010000063.1 TPA_asm: Salmonella enterica isolate 17-MIK152719 SAMEA14282189-rid18933383.guided.40, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAPYMA010000063.1 TPA_asm: Salmonella enterica isolate 17-MIK152719 SAMEA14282189-rid18933383.guided.40, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAPYMA010000063.1 TPA_asm: Salmonella enterica isolate 17-MIK152719 SAMEA14282189-rid18933383.guided.40, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	DAPYMA010000038.1 TPA_asm: Salmonella enterica isolate 17-MIK152719 SAMEA14282189-rid18933383.denovo.42, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAPYMA010000064.1 TPA_asm: Salmonella enterica isolate 17-MIK152719 SAMEA14282189-rid18933383.guided.45, whole genome shotgun sequence	1059..2258	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	DAPYMA010000042.1 TPA_asm: Salmonella enterica isolate 17-MIK152719 SAMEA14282189-rid18933383.denovo.47, whole genome shotgun sequence	856..986																																																						avrA	DAPYMA010000003.1	39393..40262	99.655	870	0						
GCA_032301935.1_PDT001834622.1_genomic.fna	Salmonella_enterica	0.5109	184.701 KB	10	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	-:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	-	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb -:r:z	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPYLZ010000001.1 TPA_asm: Salmonella enterica isolate 17-MIK152718 SAMEA14282188-rid18932063.denovo.01, whole genome shotgun sequence	81006..81443	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPYLZ010000096.1 TPA_asm: Salmonella enterica isolate 17-MIK152718 SAMEA14282188-rid18932063.guided.33, whole genome shotgun sequence	35348..35785	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYLZ010000013.1	90869..91738	96.437	870	0						
GCA_032301945.1_PDT001834619.1_genomic.fna	Salmonella_enterica	0.5203	254.628 KB	7	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYMC010000004.1 TPA_asm: Salmonella enterica isolate 17-MIK152722 SAMEA14282191-rid18933373.denovo.04, whole genome shotgun sequence	85186..85623	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYMC010000057.1 TPA_asm: Salmonella enterica isolate 17-MIK152722 SAMEA14282191-rid18933373.guided.15, whole genome shotgun sequence	7088..7525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYMC010000027.1 TPA_asm: Salmonella enterica isolate 17-MIK152722 SAMEA14282191-rid18933373.denovo.29, whole genome shotgun sequence	18825..19467	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYMC010000027.1 TPA_asm: Salmonella enterica isolate 17-MIK152722 SAMEA14282191-rid18933373.denovo.29, whole genome shotgun sequence	28949..29208																																																avrA	DAPYMC010000001.1	94780..95649	99.77	870	0						
GCA_032301975.1_PDT001834618.1_genomic.fna	Salmonella_enterica	0.5205	207.459 KB	8	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYMD010000009.1 TPA_asm: Salmonella enterica isolate 17-MIK152723 SAMEA14282192-rid18933363.denovo.09, whole genome shotgun sequence	85186..85623	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYMD010000060.1 TPA_asm: Salmonella enterica isolate 17-MIK152723 SAMEA14282192-rid18933363.guided.16, whole genome shotgun sequence	22003..22440	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYMD010000027.1 TPA_asm: Salmonella enterica isolate 17-MIK152723 SAMEA14282192-rid18933363.denovo.28, whole genome shotgun sequence	18825..19467	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYMD010000027.1 TPA_asm: Salmonella enterica isolate 17-MIK152723 SAMEA14282192-rid18933363.denovo.28, whole genome shotgun sequence	28949..29208																																																avrA	DAPYMD010000001.1	94780..95649	99.77	870	0						
GCA_032301995.1_PDT001834617.1_genomic.fna	Salmonella_enterica	0.5206	149.565 KB	12	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYME010000003.1 TPA_asm: Salmonella enterica isolate 17-MIK152724 SAMEA14282193-rid18932043.denovo.03, whole genome shotgun sequence	85196..85633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYME010000081.1 TPA_asm: Salmonella enterica isolate 17-MIK152724 SAMEA14282193-rid18932043.guided.18, whole genome shotgun sequence	12370..12807	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYME010000035.1 TPA_asm: Salmonella enterica isolate 17-MIK152724 SAMEA14282193-rid18932043.denovo.37, whole genome shotgun sequence	16310..16952	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYME010000035.1 TPA_asm: Salmonella enterica isolate 17-MIK152724 SAMEA14282193-rid18932043.denovo.37, whole genome shotgun sequence	26434..26693																																																avrA	DAPYME010000001.1	94780..95649	99.77	870	0						
GCA_032302015.1_PDT001834616.1_genomic.fna	Salmonella_enterica	0.5204	257.125 KB	6	aroC_15,dnaN_4,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	255	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_4	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYMF010000005.1 TPA_asm: Salmonella enterica isolate 18-MIK224168 SAMEA14282210-rid18933353.denovo.05, whole genome shotgun sequence	73108..73545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYMF010000051.1 TPA_asm: Salmonella enterica isolate 18-MIK224168 SAMEA14282210-rid18933353.guided.18, whole genome shotgun sequence	14350..14787	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYMF010000023.1 TPA_asm: Salmonella enterica isolate 18-MIK224168 SAMEA14282210-rid18933353.denovo.25, whole genome shotgun sequence	18834..19476	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYMF010000023.1 TPA_asm: Salmonella enterica isolate 18-MIK224168 SAMEA14282210-rid18933353.denovo.25, whole genome shotgun sequence	28959..29218																																																avrA	DAPYMF010000001.1	507809..508678	99.77	870	0						
GCA_032302035.1_PDT001834615.1_genomic.fna	Salmonella_enterica	0.52	257.125 KB	6	aroC_15,dnaN_4,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	255	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_4	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYMG010000005.1 TPA_asm: Salmonella enterica isolate 18-MIK224852 SAMEA14282211-rid18932033.denovo.05, whole genome shotgun sequence	73108..73545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYMG010000051.1 TPA_asm: Salmonella enterica isolate 18-MIK224852 SAMEA14282211-rid18932033.guided.15, whole genome shotgun sequence	16445..16882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYMG010000023.1 TPA_asm: Salmonella enterica isolate 18-MIK224852 SAMEA14282211-rid18932033.denovo.25, whole genome shotgun sequence	18834..19476	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYMG010000023.1 TPA_asm: Salmonella enterica isolate 18-MIK224852 SAMEA14282211-rid18932033.denovo.25, whole genome shotgun sequence	28959..29218																																																avrA	DAPYMG010000001.1	507802..508671	99.77	870	0						
GCA_032302055.1_PDT001834614.1_genomic.fna	Salmonella_enterica	0.5206	215.805 KB	7	aroC_15,dnaN_4,hemD_18,hisD_46,purE_924,sucA_9,thrA_34	5723	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_4	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_924	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYMH010000004.1 TPA_asm: Salmonella enterica isolate 19-MIK321399 SAMEA14282212-rid18932023.denovo.04, whole genome shotgun sequence	73108..73545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYMH010000061.1 TPA_asm: Salmonella enterica isolate 19-MIK321399 SAMEA14282212-rid18932023.guided.34, whole genome shotgun sequence	10146..10583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAPYMH010000026.1 TPA_asm: Salmonella enterica isolate 19-MIK321399 SAMEA14282212-rid18932023.denovo.26, whole genome shotgun sequence	18834..19476	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYMH010000026.1 TPA_asm: Salmonella enterica isolate 19-MIK321399 SAMEA14282212-rid18932023.denovo.26, whole genome shotgun sequence	28959..29218																																																avrA	DAPYMH010000001.1	122076..122945	99.77	870	0						
GCA_032302075.1_PDT001834612.1_genomic.fna	Salmonella_enterica	0.52	244.961 KB	6	aroC_15,dnaN_4,hemD_18,hisD_46,purE_924,sucA_9,thrA_34	5723	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_4	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_924	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYMJ010000009.1 TPA_asm: Salmonella enterica isolate 19-VLT000045 SAMEA14282214-rid18932013.denovo.09, whole genome shotgun sequence	73108..73545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYMJ010000050.1 TPA_asm: Salmonella enterica isolate 19-VLT000045 SAMEA14282214-rid18932013.guided.15, whole genome shotgun sequence	16445..16882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAPYMJ010000024.1 TPA_asm: Salmonella enterica isolate 19-VLT000045 SAMEA14282214-rid18932013.denovo.26, whole genome shotgun sequence	18834..19476	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYMJ010000024.1 TPA_asm: Salmonella enterica isolate 19-VLT000045 SAMEA14282214-rid18932013.denovo.26, whole genome shotgun sequence	28959..29218																																																avrA	DAPYMJ010000001.1	538505..539374	99.77	870	0						
GCA_032302095.1_PDT001834613.1_genomic.fna	Salmonella_enterica	0.5201	244.961 KB	6	aroC_15,dnaN_4,hemD_18,hisD_46,purE_924,sucA_9,thrA_34	5723	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_4	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_924	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYMI010000009.1 TPA_asm: Salmonella enterica isolate 19-VLT000038 SAMEA14282213-rid18933343.denovo.09, whole genome shotgun sequence	73108..73545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYMI010000048.1 TPA_asm: Salmonella enterica isolate 19-VLT000038 SAMEA14282213-rid18933343.guided.16, whole genome shotgun sequence	11763..12200	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAPYMI010000023.1 TPA_asm: Salmonella enterica isolate 19-VLT000038 SAMEA14282213-rid18933343.denovo.25, whole genome shotgun sequence	18834..19476	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYMI010000023.1 TPA_asm: Salmonella enterica isolate 19-VLT000038 SAMEA14282213-rid18933343.denovo.25, whole genome shotgun sequence	28959..29218																																																avrA	DAPYMI010000001.1	539636..540505	99.77	870	0						
GCA_032302115.1_PDT001834611.1_genomic.fna	Salmonella_enterica	0.5205	199.693 KB	8	aroC_15,dnaN_4,hemD_18,hisD_46,purE_924,sucA_9,thrA_34	5723	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_4	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_924	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYMK010000007.1 TPA_asm: Salmonella enterica isolate 19-VLT000047 SAMEA14282215-rid18933333.denovo.07, whole genome shotgun sequence	73108..73545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYMK010000064.1 TPA_asm: Salmonella enterica isolate 19-VLT000047 SAMEA14282215-rid18933333.guided.36, whole genome shotgun sequence	10146..10583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAPYMK010000030.1 TPA_asm: Salmonella enterica isolate 19-VLT000047 SAMEA14282215-rid18933333.denovo.30, whole genome shotgun sequence	16319..16961	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYMK010000030.1 TPA_asm: Salmonella enterica isolate 19-VLT000047 SAMEA14282215-rid18933333.denovo.30, whole genome shotgun sequence	26444..26703																																																avrA	DAPYMK010000001.1	122076..122945	99.77	870	0						
GCA_032302135.1_PDT001834610.1_genomic.fna	Salmonella_enterica	0.5208	180.778 KB	8	aroC_15,dnaN_4,hemD_18,hisD_46,purE_924,sucA_9,thrA_34	5723	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_4	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_924	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYML010000006.1 TPA_asm: Salmonella enterica isolate 19-VLT000078 SAMEA14282216-rid18932003.denovo.06, whole genome shotgun sequence	73108..73545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYML010000071.1 TPA_asm: Salmonella enterica isolate 19-VLT000078 SAMEA14282216-rid18932003.guided.28, whole genome shotgun sequence	42419..42856	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAPYML010000030.1 TPA_asm: Salmonella enterica isolate 19-VLT000078 SAMEA14282216-rid18932003.denovo.31, whole genome shotgun sequence	16319..16961	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYML010000030.1 TPA_asm: Salmonella enterica isolate 19-VLT000078 SAMEA14282216-rid18932003.denovo.31, whole genome shotgun sequence	26444..26703																																																avrA	DAPYML010000001.1	538505..539374	99.77	870	0						
GCA_032302175.1_PDT001834601.1_genomic.fna	Salmonella_enterica	0.5221	271.585 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAPYMQ010000002.1 TPA_asm: Salmonella enterica isolate 20-MIK330543 SAMEA14282225-rid18933283.denovo.02, whole genome shotgun sequence	207386..207823	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAPYMQ010000058.1 TPA_asm: Salmonella enterica isolate 20-MIK330543 SAMEA14282225-rid18933283.guided.40, whole genome shotgun sequence	1028..1465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	98.96	193 / 193	DAPYMQ010000043.1 TPA_asm: Salmonella enterica isolate 20-MIK330543 SAMEA14282225-rid18933283.denovo.46, whole genome shotgun sequence	806..998	enterobacteriales	IncFIB(S)	100	643 / 643	DAPYMQ010000014.1 TPA_asm: Salmonella enterica isolate 20-MIK330543 SAMEA14282225-rid18933283.denovo.14, whole genome shotgun sequence	48469..49111		enterobacteriales	IncFII(S)	100	262 / 262	DAPYMQ010000014.1 TPA_asm: Salmonella enterica isolate 20-MIK330543 SAMEA14282225-rid18933283.denovo.14, whole genome shotgun sequence	64196..64457																																									avrA	DAPYMQ010000001.1	481437..482306	99.885	870	0						
GCA_032302935.1_PDT001834657.1_genomic.fna	Salmonella_enterica	0.5209	217.112 KB	8	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYKQ010000008.1 TPA_asm: Salmonella enterica isolate 17-MIK154132 SAMEA14282196-rid18932163.denovo.08, whole genome shotgun sequence	85186..85623	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYKQ010000063.1 TPA_asm: Salmonella enterica isolate 17-MIK154132 SAMEA14282196-rid18932163.guided.25, whole genome shotgun sequence	14404..14841	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYKQ010000028.1 TPA_asm: Salmonella enterica isolate 17-MIK154132 SAMEA14282196-rid18932163.denovo.29, whole genome shotgun sequence	18829..19471	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYKQ010000028.1 TPA_asm: Salmonella enterica isolate 17-MIK154132 SAMEA14282196-rid18932163.denovo.29, whole genome shotgun sequence	28953..29212																																																avrA	DAPYKQ010000001.1	94780..95649	99.77	870	0						
GCA_032302955.1_PDT001834656.1_genomic.fna	Salmonella_enterica	0.5208	224.531 KB	7	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYKR010000004.1 TPA_asm: Salmonella enterica isolate 17-MIK154133 SAMEA14282197-rid18933633.denovo.04, whole genome shotgun sequence	85196..85633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYKR010000063.1 TPA_asm: Salmonella enterica isolate 17-MIK154133 SAMEA14282197-rid18933633.guided.39, whole genome shotgun sequence	1602..2039	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYKR010000027.1 TPA_asm: Salmonella enterica isolate 17-MIK154133 SAMEA14282197-rid18933633.denovo.27, whole genome shotgun sequence	18825..19467	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYKR010000027.1 TPA_asm: Salmonella enterica isolate 17-MIK154133 SAMEA14282197-rid18933633.denovo.27, whole genome shotgun sequence	28949..29208																																																avrA	DAPYKR010000001.1	94780..95649	99.77	870	0						
GCA_032302965.1_PDT001834645.1_genomic.fna	Salmonella_enterica	0.5202	257.125 KB	6	aroC_15,dnaN_4,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	255	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_4	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYLC010000005.1 TPA_asm: Salmonella enterica isolate 17-MIK257093 SAMEA14282208-rid18933543.denovo.05, whole genome shotgun sequence	73108..73545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYLC010000056.1 TPA_asm: Salmonella enterica isolate 17-MIK257093 SAMEA14282208-rid18933543.guided.14, whole genome shotgun sequence	42419..42856	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPYLC010000023.1 TPA_asm: Salmonella enterica isolate 17-MIK257093 SAMEA14282208-rid18933543.denovo.25, whole genome shotgun sequence	18834..19476	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYLC010000023.1 TPA_asm: Salmonella enterica isolate 17-MIK257093 SAMEA14282208-rid18933543.denovo.25, whole genome shotgun sequence	28959..29218																																																avrA	DAPYLC010000001.1	507795..508664	99.77	870	0						
GCA_032302995.1_PDT001834644.1_genomic.fna	Salmonella_enterica	0.5117	215.97 KB	9	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	-:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	-	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb -:r:z	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPYLD010000001.1 TPA_asm: Salmonella enterica isolate 18-MIK017647 SAMEA14282209-rid18932133.denovo.01, whole genome shotgun sequence	378330..378767	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPYLD010000092.1 TPA_asm: Salmonella enterica isolate 18-MIK017647 SAMEA14282209-rid18932133.guided.25, whole genome shotgun sequence	27599..28036	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYLD010000005.1	90870..91739	96.437	870	0						
GCA_032303655.1_PDT001834606.1_genomic.fna	Salmonella_enterica	0.5113	164.369 KB	11	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	-:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	-	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb -:r:z	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPYMM010000001.1 TPA_asm: Salmonella enterica isolate 20-MIK181787 SAMEA14282220-rid18933303.denovo.001, whole genome shotgun sequence	81006..81443	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPYMM010000135.1 TPA_asm: Salmonella enterica isolate 20-MIK181787 SAMEA14282220-rid18933303.guided.021, whole genome shotgun sequence	53678..54115	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYMM010000014.1	89816..90685	96.437	870	0						
GCA_032303675.1_PDT001834598.1_genomic.fna	Salmonella_enterica	0.521	325.518 KB	6	aroC_5,dnaN_14,hemD_6,hisD_12,purE_5,sucA_14,thrA_58	166	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_14	thrA	100	100	thrA_58	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAPYMP010000010.1 TPA_asm: Salmonella enterica isolate 20-VLT002686 SAMEA14282228-rid18933263.denovo.10, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAPYMP010000048.1 TPA_asm: Salmonella enterica isolate 20-VLT002686 SAMEA14282228-rid18933263.guided.31, whole genome shotgun sequence	4580..5017	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYMP010000002.1	123178..124047	99.655	870	0						
GCA_032303695.1_PDT001834605.1_genomic.fna	Salmonella_enterica	0.5221	412.137 KB	4	aroC_5,dnaN_14,hemD_18,hisD_561,purE_36,sucA_12,thrA_12	2015	4:y:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_561	purE	100	100	purE_36	sucA	100	100	sucA_12	thrA	100	100	thrA_12	4	y	1,2	Salmonella enterica subspecies enterica (subspecies I)	Coeln		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAPYMN010000001.1 TPA_asm: Salmonella enterica isolate 20-MIK315891 SAMEA14282221-rid18931983.denovo.01, whole genome shotgun sequence	832162..832599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAPYMN010000028.1 TPA_asm: Salmonella enterica isolate 20-MIK315891 SAMEA14282221-rid18931983.guided.19, whole genome shotgun sequence	2607..3044	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAPYMN010000002.1	507500..508369	99.655	870	0						
GCA_032303715.1_PDT001834600.1_genomic.fna	Salmonella_enterica	0.5119	191.168 KB	10	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	-:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	-	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb -:r:z	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPYMO010000001.1 TPA_asm: Salmonella enterica isolate 20-MIK345432 SAMEA14282226-rid18931963.denovo.01, whole genome shotgun sequence	91050..91487	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPYMO010000085.1 TPA_asm: Salmonella enterica isolate 20-MIK345432 SAMEA14282226-rid18931963.guided.49, whole genome shotgun sequence	2240..2677	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYMO010000005.1	90869..91738	96.437	870	0						
GCA_032307815.1_ASM3230781v1_genomic.fna	Salmonella_enterica	0.521	491.921 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	JAWCUM010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH943 contig00001, whole genome shotgun sequence	508076..508513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	JAWCUM010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH943 contig00013, whole genome shotgun sequence	65536..66366	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	JAWCUM010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH943 contig00013, whole genome shotgun sequence	64727..65530	Streptomycin	AF321551	blaTEM-1B	100	861/861	JAWCUM010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH943 contig00013, whole genome shotgun sequence	42603..43463	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	JAWCUM010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH943 contig00013, whole genome shotgun sequence	63851..64666	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																																																					gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	JAWCUM010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH943 contig00013, whole genome shotgun sequence	8816..9458	enterobacteriales	IncFII(S)	100	262 / 262	JAWCUM010000017.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH943 contig00017, whole genome shotgun sequence	11111..11372		enterobacteriales	IncX1	95.76	377 / 377	JAWCUM010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH943 contig00013, whole genome shotgun sequence	53186..53562																																									avrA	JAWCUM010000002.1	506073..506942	99.54	870	0						
GCA_032307835.1_ASM3230783v1_genomic.fna	Salmonella_enterica	0.5213	406.297 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	3	aac(6')-Iaa,aac(3)-IId,blaTEM-1B	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	JAWCUQ010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH935 contig00001, whole genome shotgun sequence	508076..508513	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	JAWCUQ010000024.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH935 contig00024, whole genome shotgun sequence	1115..1975	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	blaTEM-1B	100	861/861	JAWCUQ010000019.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH935 contig00019, whole genome shotgun sequence	13221..14081	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	98.96	193 / 193	JAWCUQ010000026.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH935 contig00026, whole genome shotgun sequence	563..755	enterobacteriales	IncFIB(S)	98.91	643 / 643	JAWCUQ010000017.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH935 contig00017, whole genome shotgun sequence	17634..18276		enterobacteriales	IncFII(S)	100	262 / 262	JAWCUQ010000020.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH935 contig00020, whole genome shotgun sequence	1927..2188																																									avrA	JAWCUQ010000002.1	174872..175741	99.54	870	0						
GCA_032307855.1_ASM3230785v1_genomic.fna	Salmonella_enterica	0.5209	491.607 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	JAWCUN010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH938 contig00001, whole genome shotgun sequence	810759..811196	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	JAWCUN010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH938 contig00013, whole genome shotgun sequence	66420..67250	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	JAWCUN010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH938 contig00013, whole genome shotgun sequence	65611..66414	Streptomycin	AF321551	blaTEM-1B	100	861/861	JAWCUN010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH938 contig00013, whole genome shotgun sequence	43487..44347	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	JAWCUN010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH938 contig00013, whole genome shotgun sequence	64735..65550	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																																																					gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	JAWCUN010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH938 contig00013, whole genome shotgun sequence	9700..10342	enterobacteriales	IncFII(S)	100	262 / 262	JAWCUN010000017.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH938 contig00017, whole genome shotgun sequence	11111..11372		enterobacteriales	IncX1	95.76	377 / 377	JAWCUN010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH938 contig00013, whole genome shotgun sequence	54070..54446																																									avrA	JAWCUN010000002.1	174872..175741	99.54	870	0						
GCA_032307875.1_ASM3230787v1_genomic.fna	Salmonella_enterica	0.5214	491.922 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	JAWCUP010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH941 contig00001, whole genome shotgun sequence	508076..508513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	JAWCUP010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH941 contig00013, whole genome shotgun sequence	46169..46811	enterobacteriales	IncFII(S)	100	262 / 262	JAWCUP010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH941 contig00013, whole genome shotgun sequence	1927..2188																																																avrA	JAWCUP010000002.1	140832..141701	99.54	870	0						
GCA_032307895.1_ASM3230789v1_genomic.fna	Salmonella_enterica	0.5209	491.924 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	JAWCUO010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH953 contig00001, whole genome shotgun sequence	508076..508513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	JAWCUO010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH953 contig00012, whole genome shotgun sequence	18711..19541	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	JAWCUO010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH953 contig00012, whole genome shotgun sequence	19547..20350	Streptomycin	AF321551	blaTEM-1B	100	861/861	JAWCUO010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH953 contig00012, whole genome shotgun sequence	17130..17990	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	JAWCUO010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH953 contig00012, whole genome shotgun sequence	41614..42474	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	JAWCUO010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH953 contig00012, whole genome shotgun sequence	20411..21226	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	JAWCUO010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH953 contig00012, whole genome shotgun sequence	75619..76261	enterobacteriales	IncFII(S)	100	262 / 262	JAWCUO010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH953 contig00012, whole genome shotgun sequence	1927..2188		enterobacteriales	IncX1	95.76	377 / 377	JAWCUO010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH953 contig00012, whole genome shotgun sequence	31515..31891																																									avrA	JAWCUO010000002.1	506067..506936	99.54	870	0						
GCA_032308015.1_ASM3230801v1_genomic.fna	Salmonella_enterica	0.5223	397.397 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	JAWCUR010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain JNQH954 contig00001, whole genome shotgun sequence	574099..574536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	JAWCUR010000002.1	98093..98962	99.655	870	0						
GCA_032308035.1_ASM3230803v1_genomic.fna	Salmonella_enterica	0.522	445.924 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	JAWCUS010000001.1 Salmonella enterica subsp. enterica serovar Mbandaka strain JNQH942 contig00001, whole genome shotgun sequence	727879..728316	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	JAWCUS010000002.1	189045..189914	99.195	870	0						
GCA_032308055.1_ASM3230805v1_genomic.fna	Salmonella_enterica	0.5216	446.923 KB	4	aroC_117,dnaN_135,hemD_18,hisD_12,purE_162,sucA_162,thrA_38	543	7:d:l,w	1	aac(6')-Iaa	0		0		aroC	100	100	aroC_117	dnaN	100	100	dnaN_135	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_162	sucA	100	100	sucA_162	thrA	100	100	thrA_38	7	d	l,w	Salmonella enterica subspecies enterica (subspecies I)	Livingstone		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	JAWCUV010000001.1 Salmonella enterica subsp. enterica serovar Livingstone strain JNQH944 contig00001, whole genome shotgun sequence	719578..720015	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											
GCA_032308075.1_ASM3230807v1_genomic.fna	Salmonella_enterica	0.5224	402.279 KB	3	aroC_2,dnaN_15,hemD_10,hisD_581,purE_323,sucA_7,thrA_72	2061	35:z4,z23:-	1	aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_10	hisD	100	100	hisD_581	purE	100	100	purE_323	sucA	100	100	sucA_7	thrA	100	100	thrA_72	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	JAWCUT010000001.1 Salmonella enterica subsp. enterica serovar Alachua strain JNQH933 contig00001, whole genome shotgun sequence	783432..783869	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	96.75	154 / 154	JAWCUT010000023.1 Salmonella enterica subsp. enterica serovar Alachua strain JNQH933 contig00023, whole genome shotgun sequence	2619..2772																																																						avrA	JAWCUT010000002.1	538900..539769	98.966	870	0						
GCA_032308095.1_ASM3230809v1_genomic.fna	Salmonella_enterica	0.5216	446.833 KB	4	aroC_117,dnaN_135,hemD_18,hisD_12,purE_162,sucA_162,thrA_38	543	7:d:l,w	1	aac(6')-Iaa	0		0		aroC	100	100	aroC_117	dnaN	100	100	dnaN_135	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_162	sucA	100	100	sucA_162	thrA	100	100	thrA_38	7	d	l,w	Salmonella enterica subspecies enterica (subspecies I)	Livingstone		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	JAWCUU010000001.1 Salmonella enterica subsp. enterica serovar Livingstone strain JNQH932 contig00001, whole genome shotgun sequence	719578..720015	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											
GCA_032308175.1_ASM3230817v1_genomic.fna	Salmonella_enterica	0.5222	339.998 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	10	aac(6')-Iaa,aadA16,aac(6')-Ib-cr,blaTEM-1B,floR,qnrB6,ARR-3,sul1,sul1,tet(A),dfrA27	2	gyrA_p.D87N,parC_p.T57S	2	IncFII(S),IncFII(SARC14)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	JAWCUW010000001.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH934 contig00001, whole genome shotgun sequence	459644..460081	Amikacin, Tobramycin	NC_003197	aadA16	99.65	846/846	JAWCUW010000019.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH934 contig00019, whole genome shotgun sequence	22097..22942	Spectinomycin, Streptomycin	EU675686	aac(6')-Ib-cr	100	600/600	JAWCUW010000019.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH934 contig00019, whole genome shotgun sequence	20162..20761	Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin, Ciprofloxacin	DQ303918	blaTEM-1B	100	861/861	JAWCUW010000015.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH934 contig00015, whole genome shotgun sequence	7020..7880	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	JAWCUW010000019.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH934 contig00019, whole genome shotgun sequence	12413..13626	Chloramphenicol, Florfenicol	AF118107	qnrB6	100	645/645	JAWCUW010000019.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH934 contig00019, whole genome shotgun sequence	27650..28294	Ciprofloxacin	EF523819	ARR-3	100	453/453	JAWCUW010000019.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH934 contig00019, whole genome shotgun sequence	20858..21310	Rifampicin	JF806499	sul1	100	840/840	JAWCUW010000019.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH934 contig00019, whole genome shotgun sequence	23400..24239	Sulfamethoxazole	U12338	sul1	100	840/840	JAWCUW010000019.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH934 contig00019, whole genome shotgun sequence	28866..29705	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	JAWCUW010000019.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH934 contig00019, whole genome shotgun sequence	10538..11812	Doxycycline, Tetracycline	AF534183	dfrA27	100	474/474	JAWCUW010000019.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH934 contig00019, whole genome shotgun sequence	21443..21916	Trimethoprim	FJ459817																																																																																																																																																																																																																																																																																																																																																																																											gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFII(S)	90.84	251 / 262	JAWCUW010000015.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH934 contig00015, whole genome shotgun sequence	18155..18402	enterobacteriales	IncFII(SARC14)	95.29	446 / 445	JAWCUW010000015.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH934 contig00015, whole genome shotgun sequence	17451..17895																																																avrA	JAWCUW010000002.1	547348..548217	99.77	870	0						
GCA_032308235.1_ASM3230823v1_genomic.fna	Salmonella_enterica	0.521	491.921 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	JAWCUX010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH945 contig00001, whole genome shotgun sequence	810818..811255	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	JAWCUX010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH945 contig00012, whole genome shotgun sequence	65536..66366	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	JAWCUX010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH945 contig00012, whole genome shotgun sequence	64727..65530	Streptomycin	AF321551	blaTEM-1B	100	861/861	JAWCUX010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH945 contig00012, whole genome shotgun sequence	67087..67947	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	JAWCUX010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH945 contig00012, whole genome shotgun sequence	42603..43463	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	JAWCUX010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH945 contig00012, whole genome shotgun sequence	63851..64666	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	JAWCUX010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH945 contig00012, whole genome shotgun sequence	8816..9458	enterobacteriales	IncFII(S)	100	262 / 262	JAWCUX010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH945 contig00012, whole genome shotgun sequence	82889..83150		enterobacteriales	IncX1	95.76	377 / 377	JAWCUX010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH945 contig00012, whole genome shotgun sequence	53186..53562																																									avrA	JAWCUX010000002.1	506073..506942	99.54	870	0						
GCA_032308255.1_ASM3230825v1_genomic.fna	Salmonella_enterica	0.5221	322.272 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	JAWCUY010000001.1 Salmonella enterica subsp. enterica serovar Mbandaka strain JNQH936 contig00001, whole genome shotgun sequence	727879..728316	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	JAWCUY010000002.1	189045..189914	99.195	870	0						
GCA_032308275.1_ASM3230827v1_genomic.fna	Salmonella_enterica	0.5221	251.399 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	JAWCUZ010000001.1 Salmonella enterica subsp. enterica serovar Mbandaka strain JNQH946 contig00001, whole genome shotgun sequence	141213..141650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	JAWCUZ010000002.1	503419..504288	99.195	870	0						
GCA_032308305.1_ASM3230830v1_genomic.fna	Salmonella_enterica	0.5221	446.302 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	JAWCVA010000001.1 Salmonella enterica subsp. enterica serovar Mbandaka strain JNQH947 contig00001, whole genome shotgun sequence	140613..141050	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	JAWCVA010000002.1	503419..504288	99.195	870	0						
GCA_032308335.1_ASM3230833v1_genomic.fna	Salmonella_enterica	0.5208	491.923 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aadA1,blaTEM-1B,sul1,tet(A),dfrA1,dfrA1,dfrA1	1	gyrA_p.D87G	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	JAWCVB010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH951 contig00001, whole genome shotgun sequence	508075..508512	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	JAWCVB010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH951 contig00004, whole genome shotgun sequence	269152..269943	Spectinomycin, Streptomycin	JX185132	blaTEM-1B	100	861/861	JAWCVB010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH951 contig00004, whole genome shotgun sequence	250221..251081	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	JAWCVB010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH951 contig00004, whole genome shotgun sequence	267808..268647	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	JAWCVB010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH951 contig00004, whole genome shotgun sequence	257183..258382	Doxycycline, Tetracycline	AJ517790	dfrA1	99.79	474/474	JAWCVB010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH951 contig00004, whole genome shotgun sequence	270036..270509	Trimethoprim	AF203818	dfrA1	99.79	474/474	JAWCVB010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH951 contig00004, whole genome shotgun sequence	270036..270509	Trimethoprim	AJ238350	dfrA1	99.79	474/474	JAWCVB010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH951 contig00004, whole genome shotgun sequence	270036..270509	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																																																gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																enterobacteriales	IncFIB(S)	98.91	643 / 643	JAWCVB010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH951 contig00013, whole genome shotgun sequence	9700..10342	enterobacteriales	IncFII(S)	100	262 / 262	JAWCVB010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH951 contig00013, whole genome shotgun sequence	54334..54595		enterobacteriales	IncX1	98.66	374 / 374	JAWCVB010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH951 contig00004, whole genome shotgun sequence	222470..222843																																									avrA	JAWCVB010000002.1	538046..538915	99.54	870	0						
GCA_032309475.1_PDT001834602.1_genomic.fna	Salmonella_enterica	0.522	308.988 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAPYZZ010000002.1 TPA_asm: Salmonella enterica isolate 20-MIK328907 SAMEA14282224-rid18931973.denovo.02, whole genome shotgun sequence	207386..207823	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAPYZZ010000051.1 TPA_asm: Salmonella enterica isolate 20-MIK328907 SAMEA14282224-rid18931973.guided.45, whole genome shotgun sequence	379..816	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	98.96	193 / 193	DAPYZZ010000039.1 TPA_asm: Salmonella enterica isolate 20-MIK328907 SAMEA14282224-rid18931973.denovo.41, whole genome shotgun sequence	806..998	enterobacteriales	IncFIB(S)	100	643 / 643	DAPYZZ010000016.1 TPA_asm: Salmonella enterica isolate 20-MIK328907 SAMEA14282224-rid18931973.denovo.16, whole genome shotgun sequence	79889..80531		enterobacteriales	IncFII(S)	100	262 / 262	DAPYZZ010000016.1 TPA_asm: Salmonella enterica isolate 20-MIK328907 SAMEA14282224-rid18931973.denovo.16, whole genome shotgun sequence	1781..2042																																									avrA	DAPYZZ010000005.1	174657..175526	99.885	870	0						
GCA_032309495.1_PDT001834608.1_genomic.fna	Salmonella_enterica	0.5199	325.022 KB	6	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_7,thrA_12	473	8:z10:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncFII	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAPYZW010000003.1 TPA_asm: Salmonella enterica isolate 20-MIK055118 SAMEA14282218-rid18933313.denovo.03, whole genome shotgun sequence	246393..246830	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAPYZW010000047.1 TPA_asm: Salmonella enterica isolate 20-MIK055118 SAMEA14282218-rid18933313.guided.16, whole genome shotgun sequence	41959..42396	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.04	113 / 131	DAPYZW010000030.1 TPA_asm: Salmonella enterica isolate 20-MIK055118 SAMEA14282218-rid18933313.denovo.33, whole genome shotgun sequence	258..370	enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAPYZW010000036.1 TPA_asm: Salmonella enterica isolate 20-MIK055118 SAMEA14282218-rid18933313.denovo.39, whole genome shotgun sequence	1461..1591		enterobacteriales	IncFII	96.55	261 / 261	DAPYZW010000020.1 TPA_asm: Salmonella enterica isolate 20-MIK055118 SAMEA14282218-rid18933313.denovo.22, whole genome shotgun sequence	57182..57441																																									avrA	DAPYZW010000009.1	39348..40217	99.655	870	0						
GCA_032309515.1_PDT001834604.1_genomic.fna	Salmonella_enterica	0.5114	203.777 KB	9	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	-:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	-	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb -:r:z	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPYZY010000001.1 TPA_asm: Salmonella enterica isolate 20-MIK322105 SAMEA14282222-rid18933293.denovo.01, whole genome shotgun sequence	91528..91965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPYZY010000081.1 TPA_asm: Salmonella enterica isolate 20-MIK322105 SAMEA14282222-rid18933293.guided.43, whole genome shotgun sequence	1823..2260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPYZY010000006.1	90869..91738	96.437	870	0						
GCA_032309535.1_PDT001834609.1_genomic.fna	Salmonella_enterica	0.5205	179.679 KB	9	aroC_15,dnaN_4,hemD_18,hisD_46,purE_924,sucA_9,thrA_34	5723	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_4	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_924	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPYZV010000005.1 TPA_asm: Salmonella enterica isolate 19-VLT000087 SAMEA14282217-rid18933323.denovo.05, whole genome shotgun sequence	73108..73545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPYZV010000067.1 TPA_asm: Salmonella enterica isolate 19-VLT000087 SAMEA14282217-rid18933323.guided.36, whole genome shotgun sequence	25622..26059	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAPYZV010000030.1 TPA_asm: Salmonella enterica isolate 19-VLT000087 SAMEA14282217-rid18933323.denovo.30, whole genome shotgun sequence	18834..19476	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPYZV010000030.1 TPA_asm: Salmonella enterica isolate 19-VLT000087 SAMEA14282217-rid18933323.denovo.30, whole genome shotgun sequence	28959..29218																																																avrA	DAPYZV010000001.1	122076..122945	99.77	870	0						
GCA_032309545.1_PDT001834607.1_genomic.fna	Salmonella_enterica	0.5205	223.871 KB	8	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_7,thrA_12	473	8:z10:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncFII	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAPYZU010000002.1 TPA_asm: Salmonella enterica isolate 20-MIK055120 SAMEA14282219-rid18931993.denovo.02, whole genome shotgun sequence	246393..246830	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAPYZU010000063.1 TPA_asm: Salmonella enterica isolate 20-MIK055120 SAMEA14282219-rid18931993.guided.46, whole genome shotgun sequence	274..711	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.04	113 / 131	DAPYZU010000042.1 TPA_asm: Salmonella enterica isolate 20-MIK055120 SAMEA14282219-rid18931993.denovo.43, whole genome shotgun sequence	258..370	enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAPYZU010000047.1 TPA_asm: Salmonella enterica isolate 20-MIK055120 SAMEA14282219-rid18931993.denovo.50, whole genome shotgun sequence	1461..1591		enterobacteriales	IncFII	96.55	261 / 261	DAPYZU010000027.1 TPA_asm: Salmonella enterica isolate 20-MIK055120 SAMEA14282219-rid18931993.denovo.27, whole genome shotgun sequence	9955..10214																																									avrA	DAPYZU010000014.1	39605..40474	99.655	870	0						
GCA_032309575.1_PDT001834597.1_genomic.fna	Salmonella_enterica	0.5211	253.255 KB	7	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPZAB010000004.1 TPA_asm: Salmonella enterica isolate 20-VLT002714 SAMEA14282229-rid18931953.denovo.04, whole genome shotgun sequence	85196..85633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPZAB010000050.1 TPA_asm: Salmonella enterica isolate 20-VLT002714 SAMEA14282229-rid18931953.guided.35, whole genome shotgun sequence	2746..3183	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPZAB010000027.1 TPA_asm: Salmonella enterica isolate 20-VLT002714 SAMEA14282229-rid18931953.denovo.27, whole genome shotgun sequence	18829..19471	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZAB010000027.1 TPA_asm: Salmonella enterica isolate 20-VLT002714 SAMEA14282229-rid18931953.denovo.27, whole genome shotgun sequence	28953..29212																																																avrA	DAPZAB010000001.1	94780..95649	99.77	870	0						
GCA_032309595.1_PDT001834603.1_genomic.fna	Salmonella_enterica	0.5222	733.664 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,qnrB19,qnrB19,tet(A),tet(A)	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAPYZX010000001.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.denovo.01, whole genome shotgun sequence	572313..572750	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAPYZX010000019.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.denovo.19, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAPYZX010000019.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.denovo.19, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAPYZX010000019.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.denovo.19, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAPYZX010000019.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.denovo.19, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAPYZX010000019.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.denovo.19, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aph(6)-Id	100	837/837	DAPYZX010000036.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.guided.21, whole genome shotgun sequence	2922..3758	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAPYZX010000036.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.guided.21, whole genome shotgun sequence	2120..2922	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAPYZX010000036.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.guided.21, whole genome shotgun sequence	2119..2922	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAPYZX010000036.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.guided.21, whole genome shotgun sequence	2119..2922	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAPYZX010000036.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.guided.21, whole genome shotgun sequence	2119..2922	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	DAPYZX010000039.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.guided.29, whole genome shotgun sequence	1674..2111	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	DAPYZX010000026.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.denovo.31, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	DAPYZX010000040.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.guided.30, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	tet(A)	100	1200/1200	DAPYZX010000021.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.denovo.24, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAPYZX010000041.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.guided.32, whole genome shotgun sequence	431..1630	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	DAPYZX010000026.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.denovo.31, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	DAPYZX010000040.1 TPA_asm: Salmonella enterica isolate 20-MIK326009 SAMEA14282223-rid18933733.guided.30, whole genome shotgun sequence	1924..2054																																																avrA	DAPYZX010000007.1	140157..141026	99.655	870	0						
GCA_032309615.1_PDT001834599.1_genomic.fna	Salmonella_enterica	0.5209	254.641 KB	7	aroC_15,dnaN_745,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	4896	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_745	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPZAA010000004.1 TPA_asm: Salmonella enterica isolate 20-VLT001878 SAMEA14282227-rid18933273.denovo.04, whole genome shotgun sequence	85186..85623	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPZAA010000051.1 TPA_asm: Salmonella enterica isolate 20-VLT001878 SAMEA14282227-rid18933273.guided.35, whole genome shotgun sequence	3041..3478	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPZAA010000025.1 TPA_asm: Salmonella enterica isolate 20-VLT001878 SAMEA14282227-rid18933273.denovo.25, whole genome shotgun sequence	18829..19471	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZAA010000025.1 TPA_asm: Salmonella enterica isolate 20-VLT001878 SAMEA14282227-rid18933273.denovo.25, whole genome shotgun sequence	28953..29212																																																avrA	DAPZAA010000001.1	94780..95649	99.77	870	0						
GCA_032309635.1_PDT001834595.1_genomic.fna	Salmonella_enterica	0.5149	27.968 KB	53	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	42:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	42	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 42:r:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPZAD010000014.1 TPA_asm: Salmonella enterica isolate 21-MIK001018 SAMEA14282231-rid18931943.denovo.014, whole genome shotgun sequence	15525..15962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPZAD010000373.1 TPA_asm: Salmonella enterica isolate 21-MIK001018 SAMEA14282231-rid18931943.guided.256, whole genome shotgun sequence	1244..1681	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPZAD010000057.1	23920..24789	96.437	870	0						
GCA_032309655.1_PDT001834594.1_genomic.fna	Salmonella_enterica	0.5142	38.987 KB	42	aroC_29,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_28	645	42:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	42	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 42:r:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAPZAC010000014.1 TPA_asm: Salmonella enterica isolate 21-MIK001026 SAMEA14282232-rid18933243.denovo.014, whole genome shotgun sequence	14963..15400	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAPZAC010000263.1 TPA_asm: Salmonella enterica isolate 21-MIK001026 SAMEA14282232-rid18933243.guided.196, whole genome shotgun sequence	2089..2526	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAPZAC010000088.1	18262..19131	96.437	870	0						
GCA_032309675.1_PDT001834593.1_genomic.fna	Salmonella_enterica	0.5233	21.539 KB	67	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAPZAE010000008.1 TPA_asm: Salmonella enterica isolate 21-MIK014914 SAMEA14282233-rid18933723.denovo.008, whole genome shotgun sequence	6937..7374	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAPZAE010000368.1 TPA_asm: Salmonella enterica isolate 21-MIK014914 SAMEA14282233-rid18933723.guided.294, whole genome shotgun sequence	538..975	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	98.96	193 / 193	DAPZAE010000301.1 TPA_asm: Salmonella enterica isolate 21-MIK014914 SAMEA14282233-rid18933723.denovo.303, whole genome shotgun sequence	806..998	enterobacteriales	IncFIB(S)	100	643 / 643	DAPZAE010000001.1 TPA_asm: Salmonella enterica isolate 21-MIK014914 SAMEA14282233-rid18933723.denovo.001, whole genome shotgun sequence	79871..80513		enterobacteriales	IncFII(S)	100	262 / 262	DAPZAE010000001.1 TPA_asm: Salmonella enterica isolate 21-MIK014914 SAMEA14282233-rid18933723.denovo.001, whole genome shotgun sequence	1752..2013																																									avrA	DAPZAE010000153.1	10179..11048	99.885	870	0						
GCA_032309695.1_PDT001834592.1_genomic.fna	Salmonella_enterica	0.5215	59.045 KB	27	aroC_15,dnaN_4,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	255	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_4	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPZAF010000020.1 TPA_asm: Salmonella enterica isolate 21-VLT000113 SAMEA14282234-rid18933233.denovo.020, whole genome shotgun sequence	20276..20713	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPZAF010000139.1 TPA_asm: Salmonella enterica isolate 21-VLT000113 SAMEA14282234-rid18933233.guided.057, whole genome shotgun sequence	22211..22648	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPZAF010000044.1 TPA_asm: Salmonella enterica isolate 21-VLT000113 SAMEA14282234-rid18933233.denovo.044, whole genome shotgun sequence	18834..19476	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZAF010000044.1 TPA_asm: Salmonella enterica isolate 21-VLT000113 SAMEA14282234-rid18933233.denovo.044, whole genome shotgun sequence	28959..29218																																																avrA	DAPZAF010000016.1	24902..25771	99.77	870	0						
GCA_032309715.1_PDT001834591.1_genomic.fna	Salmonella_enterica	0.5213	76.175 KB	20	aroC_15,dnaN_4,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	255	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_4	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPZAG010000026.1 TPA_asm: Salmonella enterica isolate 21-VLT000114 SAMEA14282235-rid18933223.denovo.026, whole genome shotgun sequence	17262..17699	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPZAG010000110.1 TPA_asm: Salmonella enterica isolate 21-VLT000114 SAMEA14282235-rid18933223.guided.076, whole genome shotgun sequence	7354..7791	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPZAG010000043.1 TPA_asm: Salmonella enterica isolate 21-VLT000114 SAMEA14282235-rid18933223.denovo.043, whole genome shotgun sequence	18834..19476	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZAG010000043.1 TPA_asm: Salmonella enterica isolate 21-VLT000114 SAMEA14282235-rid18933223.denovo.043, whole genome shotgun sequence	28959..29218																																																avrA	DAPZAG010000001.1	95190..96059	99.77	870	0						
GCA_032309735.1_PDT001834589.1_genomic.fna	Salmonella_enterica	0.521	257.126 KB	6	aroC_15,dnaN_4,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	255	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_4	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPZAI010000005.1 TPA_asm: Salmonella enterica isolate 21-VLT000470 SAMEA14282237-rid18933213.denovo.05, whole genome shotgun sequence	73108..73545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPZAI010000053.1 TPA_asm: Salmonella enterica isolate 21-VLT000470 SAMEA14282237-rid18933213.guided.44, whole genome shotgun sequence	104..541	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPZAI010000022.1 TPA_asm: Salmonella enterica isolate 21-VLT000470 SAMEA14282237-rid18933213.denovo.22, whole genome shotgun sequence	18834..19476	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZAI010000022.1 TPA_asm: Salmonella enterica isolate 21-VLT000470 SAMEA14282237-rid18933213.denovo.22, whole genome shotgun sequence	28959..29218																																																avrA	DAPZAI010000001.1	507932..508801	99.77	870	0						
GCA_032309755.1_PDT001834590.1_genomic.fna	Salmonella_enterica	0.5213	79.767 KB	17	aroC_15,dnaN_4,hemD_18,hisD_46,purE_90,sucA_9,thrA_34	255	4:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_4	hemD	100	100	hemD_18	hisD	100	100	hisD_46	purE	100	100	purE_90	sucA	100	100	sucA_9	thrA	100	100	thrA_34	4	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fulica or Hessarek	The predicted serotypes share the same general formula: 4:a:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAPZAH010000001.1 TPA_asm: Salmonella enterica isolate 21-VLT000115 SAMEA14282236-rid18931933.denovo.001, whole genome shotgun sequence	25585..26022	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAPZAH010000118.1 TPA_asm: Salmonella enterica isolate 21-VLT000115 SAMEA14282236-rid18931933.guided.100, whole genome shotgun sequence	395..832	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.07	643 / 643	DAPZAH010000034.1 TPA_asm: Salmonella enterica isolate 21-VLT000115 SAMEA14282236-rid18931933.denovo.034, whole genome shotgun sequence	18834..19476	enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZAH010000034.1 TPA_asm: Salmonella enterica isolate 21-VLT000115 SAMEA14282236-rid18931933.denovo.034, whole genome shotgun sequence	28959..29218																																																avrA	DAPZAH010000012.1	24916..25785	99.77	870	0						
GCA_032312735.1_PDT001912268.1_genomic.fna	Salmonella_enterica	0.5216	406.83 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGMG010000001.1 Salmonella enterica strain PNUSAS387976 SAMN37657562-rid19580193.denovo.01, whole genome shotgun sequence	145308..145745	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGMG010000030.1 Salmonella enterica strain PNUSAS387976 SAMN37657562-rid19580193.guided.21, whole genome shotgun sequence	1564..2001	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGMG010000016.1	39485..40353	99.195	870	0						
GCA_032314995.1_PDT001832165.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGNE010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0022 SAMN36748716-rid18914313.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGNE010000026.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0022 SAMN36748716-rid18914313.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGNE010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0022 SAMN36748716-rid18914313.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNGNE010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0022 SAMN36748716-rid18914313.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNGNE010000002.1	553642..554511	99.54	870	0						
GCA_032315015.1_PDT001832164.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGNF010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0023 SAMN36748717-rid18914303.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGNF010000027.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0023 SAMN36748717-rid18914303.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGNF010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0023 SAMN36748717-rid18914303.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNGNF010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0023 SAMN36748717-rid18914303.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNGNF010000002.1	553636..554505	99.54	870	0						
GCA_032315055.1_PDT001832162.1_genomic.fna	Salmonella_enterica	0.5197	341.904 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGNG010000003.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0015 SAMN36748562-rid18914293.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGNG010000041.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0015 SAMN36748562-rid18914293.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNGNG010000016.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0015 SAMN36748562-rid18914293.denovo.17, whole genome shotgun sequence	7078..8223	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNGNG010000043.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0015 SAMN36748562-rid18914293.guided.27, whole genome shotgun sequence	5757..6902	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNGNG010000016.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0015 SAMN36748562-rid18914293.denovo.17, whole genome shotgun sequence	78496..78637																																																						avrA	ABNGNG010000005.1	175018..175886	100	869	0						
GCA_032315075.1_PDT001832161.1_genomic.fna	Salmonella_enterica	0.5226	758.874 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGNH010000001.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.denovo.01, whole genome shotgun sequence	639634..640071	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNGNH010000018.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.denovo.20, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABNGNH010000029.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.guided.23, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNGNH010000030.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.guided.24, whole genome shotgun sequence	269..706	Amikacin, Tobramycin	NC_003197	blaCARB-2	100	867/867	ABNGNH010000018.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.denovo.20, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNGNH010000029.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.guided.23, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNGNH010000019.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.denovo.21, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNGNH010000033.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.guided.29, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNGNH010000017.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.denovo.19, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNGNH010000031.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.guided.26, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNGNH010000018.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.denovo.20, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNGNH010000029.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.guided.23, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNGNH010000018.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.denovo.20, whole genome shotgun sequence	5021..5860	Sulfamethoxazole	U12338	sul1	100	840/840	ABNGNH010000034.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.guided.31, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNGNH010000017.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.denovo.19, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNGNH010000032.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.guided.27, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNGNH010000017.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.denovo.19, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNGNH010000032.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.guided.27, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNGNH010000014.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-NY-NCR-0013 SAMN36748563-rid18914283.denovo.14, whole genome shotgun sequence	4434..4684																																																						avrA	ABNGNH010000003.1	583640..584509	99.77	870	0						
GCA_032315095.1_PDT001832160.1_genomic.fna	Salmonella_enterica	0.5216	536.237 KB	4	aroC_139,dnaN_174,hemD_68,hisD_132,purE_133,sucA_9,thrA_168	578	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_139	dnaN	100	100	dnaN_174	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_133	sucA	100	100	sucA_9	thrA	100	100	thrA_168	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGNI010000001.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0019 SAMN36748564-rid18914273.denovo.01, whole genome shotgun sequence	146083..146520	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGNI010000021.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0019 SAMN36748564-rid18914273.guided.16, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGNI010000003.1	574103..574972	99.195	870	0						
GCA_032315115.1_PDT001832158.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGNJ010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0019 SAMN36748566-rid18913913.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGNJ010000024.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0019 SAMN36748566-rid18913913.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGNJ010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0019 SAMN36748566-rid18913913.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNGNJ010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0019 SAMN36748566-rid18913913.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNGNJ010000002.1	553636..554505	99.54	870	0						
GCA_032315135.1_PDT001832159.1_genomic.fna	Salmonella_enterica	0.5205	258.651 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),Col156,ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGNK010000002.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0020 SAMN36748565-rid18914263.denovo.02, whole genome shotgun sequence	112771..113208	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGNK010000055.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0020 SAMN36748565-rid18914263.guided.15, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNGNK010000040.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0020 SAMN36748565-rid18914263.denovo.43, whole genome shotgun sequence	190..318	enterobacteriales	Col156	94.81	154 / 154	ABNGNK010000042.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0020 SAMN36748565-rid18914263.denovo.45, whole genome shotgun sequence	1127..1280		enterobacteriales	ColpVC	97.91	191 / 193	ABNGNK010000041.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0020 SAMN36748565-rid18914263.denovo.44, whole genome shotgun sequence	1534..1724																																									avrA	ABNGNK010000008.1	174641..175509	99.77	870	0						
GCA_032315155.1_PDT001832157.1_genomic.fna	Salmonella_enterica	0.5202	273.328 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGNL010000002.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0021 SAMN36748567-rid18914253.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGNL010000046.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0021 SAMN36748567-rid18914253.guided.37, whole genome shotgun sequence	645..1082	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNGNL010000017.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0021 SAMN36748567-rid18914253.denovo.17, whole genome shotgun sequence	5738..6883	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNGNL010000043.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0021 SAMN36748567-rid18914253.guided.26, whole genome shotgun sequence	5759..6904	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNGNL010000017.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0021 SAMN36748567-rid18914253.denovo.17, whole genome shotgun sequence	77156..77297																																																						avrA	ABNGNL010000004.1	174651..175519	100	869	0						
GCA_032315175.1_PDT001832156.1_genomic.fna	Salmonella_enterica	0.5202	283.556 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGNM010000001.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0022 SAMN36748568-rid18914243.denovo.01, whole genome shotgun sequence	358434..358871	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGNM010000054.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0022 SAMN36748568-rid18914243.guided.16, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNGNM010000003.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0022 SAMN36748568-rid18914243.denovo.03, whole genome shotgun sequence	14271..15416	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNGNM010000053.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0022 SAMN36748568-rid18914243.guided.15, whole genome shotgun sequence	13901..15046	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNGNM010000035.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0022 SAMN36748568-rid18914243.denovo.40, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNGNM010000057.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0022 SAMN36748568-rid18914243.guided.39, whole genome shotgun sequence	3336..4151	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNGNM010000035.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0022 SAMN36748568-rid18914243.denovo.40, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGNM010000057.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0022 SAMN36748568-rid18914243.guided.39, whole genome shotgun sequence	6328..7527	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNGNM010000038.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0022 SAMN36748568-rid18914243.denovo.43, whole genome shotgun sequence	371..501	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNGNM010000039.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0022 SAMN36748568-rid18914243.denovo.44, whole genome shotgun sequence	3134..3264		enterobacteriales	IncC	100	417 / 417	ABNGNM010000024.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0022 SAMN36748568-rid18914243.denovo.27, whole genome shotgun sequence	38349..38765																																									avrA	ABNGNM010000003.1	200567..201436	99.885	870	0						
GCA_032315195.1_PDT001832155.1_genomic.fna	Salmonella_enterica	0.5217	264.537 KB	7	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNGNO010000002.1 Salmonella enterica subsp. enterica serovar Litchfield strain SAL-22-VL-NY-FL-0005 SAMN36748569-rid18914233.denovo.02, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNGNO010000036.1 Salmonella enterica subsp. enterica serovar Litchfield strain SAL-22-VL-NY-FL-0005 SAMN36748569-rid18914233.guided.24, whole genome shotgun sequence	17787..18224	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGNO010000006.1	99254..100123	99.77	870	0						
GCA_032315755.1_PDT001912269.1_genomic.fna	Salmonella_enterica	0.5214	283.604 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGOP010000001.1 Salmonella enterica strain PNUSAS388021 SAMN37657561-rid19580203.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGOP010000034.1 Salmonella enterica strain PNUSAS388021 SAMN37657561-rid19580203.guided.22, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGOP010000021.1 Salmonella enterica strain PNUSAS388021 SAMN37657561-rid19580203.denovo.23, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNGOP010000023.1 Salmonella enterica strain PNUSAS388021 SAMN37657561-rid19580203.denovo.25, whole genome shotgun sequence	3426..3687																																																avrA	ABNGOP010000002.1	552957..553826	99.54	870	0						
GCA_032316115.1_PDT001832130.1_genomic.fna	Salmonella_enterica	0.5218	555.907 KB	4	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGOY010000001.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL-22-VL-NY-MS-0018 SAMN36748521-rid18914083.denovo.01, whole genome shotgun sequence	675109..675546	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGOY010000020.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL-22-VL-NY-MS-0018 SAMN36748521-rid18914083.denovo.23, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNGOY010000020.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL-22-VL-NY-MS-0018 SAMN36748521-rid18914083.denovo.23, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGOY010000020.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL-22-VL-NY-MS-0018 SAMN36748521-rid18914083.denovo.23, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGOY010000020.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL-22-VL-NY-MS-0018 SAMN36748521-rid18914083.denovo.23, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGOY010000020.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL-22-VL-NY-MS-0018 SAMN36748521-rid18914083.denovo.23, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNGOY010000030.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL-22-VL-NY-MS-0018 SAMN36748521-rid18914083.guided.21, whole genome shotgun sequence	4975..5412	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGOY010000031.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL-22-VL-NY-MS-0018 SAMN36748521-rid18914083.guided.24, whole genome shotgun sequence	821..1657	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNGOY010000031.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL-22-VL-NY-MS-0018 SAMN36748521-rid18914083.guided.24, whole genome shotgun sequence	19..821	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGOY010000031.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL-22-VL-NY-MS-0018 SAMN36748521-rid18914083.guided.24, whole genome shotgun sequence	18..821	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGOY010000031.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL-22-VL-NY-MS-0018 SAMN36748521-rid18914083.guided.24, whole genome shotgun sequence	18..821	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGOY010000031.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL-22-VL-NY-MS-0018 SAMN36748521-rid18914083.guided.24, whole genome shotgun sequence	18..821	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNGOY010000019.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL-22-VL-NY-MS-0018 SAMN36748521-rid18914083.denovo.22, whole genome shotgun sequence	3215..4414	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGOY010000032.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL-22-VL-NY-MS-0018 SAMN36748521-rid18914083.guided.26, whole genome shotgun sequence	225..1424	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGOY010000003.1	573268..574137	99.655	870	0						
GCA_032316135.1_PDT001832127.1_genomic.fna	Salmonella_enterica	0.5211	490.119 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGOZ010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-FL-0006 SAMN36748524-rid18914063.denovo.01, whole genome shotgun sequence	774542..774979	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGOZ010000021.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-FL-0006 SAMN36748524-rid18914063.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGOZ010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-FL-0006 SAMN36748524-rid18914063.denovo.14, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNGOZ010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-FL-0006 SAMN36748524-rid18914063.denovo.14, whole genome shotgun sequence	53083..53344																																																avrA	ABNGOZ010000002.1	553559..554428	99.54	870	0						
GCA_032316255.1_PDT001832118.1_genomic.fna	Salmonella_enterica	0.5189	432.734 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col8282,IncI1-I(Alpha),IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNGPG010000002.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0003 SAMN36748422-rid18913783.denovo.02, whole genome shotgun sequence	425217..425654	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNGPG010000025.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0003 SAMN36748422-rid18913783.guided.10, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col8282	100	207 / 207	ABNGPG010000018.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0003 SAMN36748422-rid18913783.denovo.21, whole genome shotgun sequence	414..620	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNGPG010000011.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0003 SAMN36748422-rid18913783.denovo.12, whole genome shotgun sequence	79715..79856		enterobacteriales	IncI2(Delta)	98.42	316 / 316	ABNGPG010000014.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0003 SAMN36748422-rid18913783.denovo.16, whole genome shotgun sequence	29113..29428																																									avrA	ABNGPG010000003.1	149711..150580	99.425	870	0						
GCA_032316275.1_PDT001832119.1_genomic.fna	Salmonella_enterica	0.5184	510.212 KB	3	aroC_43,dnaN_47,hemD_49,hisD_16,purE_41,sucA_15,thrA_3	241	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGPF010000001.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0002 SAMN36748421-rid18913993.denovo.01, whole genome shotgun sequence	645516..645953	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGPF010000024.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0002 SAMN36748421-rid18913993.guided.09, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGPF010000003.1	162700..163569	98.966	870	0						
GCA_032316295.1_PDT001832117.1_genomic.fna	Salmonella_enterica	0.522	377.001 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGPH010000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-GA-0013 SAMN36748431-rid18913983.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGPH010000038.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-GA-0013 SAMN36748431-rid18913983.guided.29, whole genome shotgun sequence	4069..4506	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNGPH010000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-GA-0013 SAMN36748431-rid18913983.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNGPH010000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-GA-0013 SAMN36748431-rid18913983.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNGPH010000001.1	391260..392128	100	869	0						
GCA_032316315.1_PDT001832116.1_genomic.fna	Salmonella_enterica	0.5216	256.711 KB	8	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNGPJ010000019.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0004 SAMN36748423-rid18913973.denovo.19, whole genome shotgun sequence	69651..70088	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNGPJ010000045.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0004 SAMN36748423-rid18913973.guided.31, whole genome shotgun sequence	16453..16890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNGPJ010000026.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0004 SAMN36748423-rid18913973.denovo.27, whole genome shotgun sequence	8691..8832																																																						avrA	ABNGPJ010000009.1	145721..146590	99.425	870	0						
GCA_032316335.1_PDT001832115.1_genomic.fna	Salmonella_enterica	0.5217	406.842 KB	4	aroC_99,dnaN_175,hemD_58,hisD_11,purE_111,sucA_9,thrA_2	639	3,10:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_99	dnaN	100	100	dnaN_175	hemD	100	100	hemD_58	hisD	100	100	hisD_11	purE	100	100	purE_111	sucA	100	100	sucA_9	thrA	100	100	thrA_2	3,10	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Orion		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNGPI010000001.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0007 SAMN36748424-rid18913963.denovo.01, whole genome shotgun sequence	710032..710469	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNGPI010000046.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0007 SAMN36748424-rid18913963.guided.12, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.04	115 / 131	ABNGPI010000026.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0007 SAMN36748424-rid18913963.denovo.29, whole genome shotgun sequence	1100..1214	enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNGPI010000021.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0007 SAMN36748424-rid18913963.denovo.23, whole genome shotgun sequence	4037..4178																																																											
GCA_032316355.1_PDT001832114.1_genomic.fna	Salmonella_enterica	0.5194	403.664 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	4	aac(6')-Iaa,aadA12,aac(6')-Iaa,aadA12,fosA7,fosA7,sul1,sul1	1	parC_p.T57S	2	IncI1-I(Alpha),IncI1-I(Alpha),IncQ1	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGPK010000001.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0009 SAMN36748426-rid18913953.denovo.01, whole genome shotgun sequence	483585..484022	Amikacin, Tobramycin	NC_003197	aadA12	100	792/792	ABNGPK010000013.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0009 SAMN36748426-rid18913953.denovo.13, whole genome shotgun sequence	71478..72269	Spectinomycin, Streptomycin	AY665771	aac(6')-Iaa	97.95	438/438	ABNGPK010000045.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0009 SAMN36748426-rid18913953.guided.14, whole genome shotgun sequence	44275..44712	Amikacin, Tobramycin	NC_003197	aadA12	100	792/792	ABNGPK010000047.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0009 SAMN36748426-rid18913953.guided.24, whole genome shotgun sequence	5868..6659	Spectinomycin, Streptomycin	AY665771	fosA7	97.16	423/423	ABNGPK010000003.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0009 SAMN36748426-rid18913953.denovo.03, whole genome shotgun sequence	388761..389183	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNGPK010000048.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0009 SAMN36748426-rid18913953.guided.29, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNGPK010000013.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0009 SAMN36748426-rid18913953.denovo.13, whole genome shotgun sequence	72774..73613	Sulfamethoxazole	U12338	sul1	100	840/840	ABNGPK010000047.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0009 SAMN36748426-rid18913953.guided.24, whole genome shotgun sequence	7164..8003	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNGPK010000013.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0009 SAMN36748426-rid18913953.denovo.13, whole genome shotgun sequence	83135..83276	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNGPK010000047.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0009 SAMN36748426-rid18913953.guided.24, whole genome shotgun sequence	17525..17666		enterobacteriales	IncQ1	100	796 / 796	ABNGPK010000026.1 Salmonella enterica subsp. enterica strain SAL-22-VL-NY-UP-NBC-0009 SAMN36748426-rid18913953.denovo.31, whole genome shotgun sequence	292..1087																																									avrA	ABNGPK010000002.1	122302..123171	99.195	870	0						
GCA_032316375.1_PDT001832112.1_genomic.fna	Salmonella_enterica	0.5214	194.39 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGPL010000017.1 Salmonella enterica subsp. enterica serovar Infantis strain SAL-22-VL-NY-MS-0022 SAMN36748428-rid18913943.denovo.17, whole genome shotgun sequence	81256..81693	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNGPL010000030.1 Salmonella enterica subsp. enterica serovar Infantis strain SAL-22-VL-NY-MS-0022 SAMN36748428-rid18913943.denovo.30, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGPL010000030.1 Salmonella enterica subsp. enterica serovar Infantis strain SAL-22-VL-NY-MS-0022 SAMN36748428-rid18913943.denovo.30, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNGPL010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain SAL-22-VL-NY-MS-0022 SAMN36748428-rid18913943.guided.42, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGPL010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain SAL-22-VL-NY-MS-0022 SAMN36748428-rid18913943.guided.42, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNGPL010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain SAL-22-VL-NY-MS-0022 SAMN36748428-rid18913943.guided.57, whole genome shotgun sequence	639..1076	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNGPL010000030.1 Salmonella enterica subsp. enterica serovar Infantis strain SAL-22-VL-NY-MS-0022 SAMN36748428-rid18913943.denovo.30, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNGPL010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain SAL-22-VL-NY-MS-0022 SAMN36748428-rid18913943.guided.42, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNGPL010000030.1 Salmonella enterica subsp. enterica serovar Infantis strain SAL-22-VL-NY-MS-0022 SAMN36748428-rid18913943.denovo.30, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGPL010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain SAL-22-VL-NY-MS-0022 SAMN36748428-rid18913943.guided.49, whole genome shotgun sequence	1056..2255	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNGPL010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain SAL-22-VL-NY-MS-0022 SAMN36748428-rid18913943.denovo.36, whole genome shotgun sequence	9109..9668																																																						avrA	ABNGPL010000004.1	149828..150697	99.655	870	0						
GCA_032316395.1_PDT001832110.1_genomic.fna	Salmonella_enterica	0.5205	449.836 KB	5	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	2	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGPO010000001.1 Salmonella enterica subsp. enterica serovar Senftenberg strain SAL-22-VL-NY-GA-0012 SAMN36748429-rid18913753.denovo.01, whole genome shotgun sequence	493338..493775	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.75	816/816	ABNGPO010000023.1 Salmonella enterica subsp. enterica serovar Senftenberg strain SAL-22-VL-NY-GA-0012 SAMN36748429-rid18913753.denovo.24, whole genome shotgun sequence	1930..2745	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EF015636	aac(6')-Iaa	97.95	438/438	ABNGPO010000036.1 Salmonella enterica subsp. enterica serovar Senftenberg strain SAL-22-VL-NY-GA-0012 SAMN36748429-rid18913753.guided.25, whole genome shotgun sequence	3468..3905	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.75	816/816	ABNGPO010000037.1 Salmonella enterica subsp. enterica serovar Senftenberg strain SAL-22-VL-NY-GA-0012 SAMN36748429-rid18913753.guided.29, whole genome shotgun sequence	750..1565	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EF015636																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNGPO010000023.1 Salmonella enterica subsp. enterica serovar Senftenberg strain SAL-22-VL-NY-GA-0012 SAMN36748429-rid18913753.denovo.24, whole genome shotgun sequence	810..940																																																						avrA	ABNGPO010000004.1	128000..128869	98.966	870	0						
GCA_032316435.1_PDT001832109.1_genomic.fna	Salmonella_enterica	0.522	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGPQ010000001.1 Salmonella enterica subsp. enterica serovar Braenderup strain SAL-22-VL-NY-MS-0024 SAMN36748430-rid18913743.denovo.01, whole genome shotgun sequence	833828..834265	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGPQ010000026.1 Salmonella enterica subsp. enterica serovar Braenderup strain SAL-22-VL-NY-MS-0024 SAMN36748430-rid18913743.guided.14, whole genome shotgun sequence	26694..27131	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGPQ010000002.1	127885..128754	98.966	870	0						
GCA_032316515.1_PDT001912315.1_genomic.fna	Salmonella_enterica	0.5209	480.935 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGPV010000001.1 Salmonella enterica strain PNUSAS388421 SAMN37657790-rid19580923.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGPV010000023.1 Salmonella enterica strain PNUSAS388421 SAMN37657790-rid19580923.guided.16, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGPV010000015.1 Salmonella enterica strain PNUSAS388421 SAMN37657790-rid19580923.denovo.17, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNGPV010000015.1 Salmonella enterica strain PNUSAS388421 SAMN37657790-rid19580923.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABNGPV010000002.1	553426..554295	99.54	870	0						
GCA_032316575.1_PDT001912316.1_genomic.fna	Salmonella_enterica	0.5215	441.713 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGPX010000001.1 Salmonella enterica strain PNUSAS388398 SAMN37657797-rid19580933.denovo.01, whole genome shotgun sequence	596560..596997	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNGPX010000024.1 Salmonella enterica strain PNUSAS388398 SAMN37657797-rid19580933.guided.13, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGPX010000004.1	401364..402233	99.77	870	0						
GCA_032316595.1_PDT001912314.1_genomic.fna	Salmonella_enterica	0.5217	327.574 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNGPU010000001.1 Salmonella enterica strain PNUSAS388427 SAMN37657793-rid19580913.denovo.01, whole genome shotgun sequence	838774..839211	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNGPU010000028.1 Salmonella enterica strain PNUSAS388427 SAMN37657793-rid19580913.guided.17, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGPU010000003.1	154752..155621	98.851	870	0						
GCA_032316615.1_PDT001912313.1_genomic.fna	Salmonella_enterica	0.522	763.351 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGPW010000001.1 Salmonella enterica strain PNUSAS388425 SAMN37657795-rid19580903.denovo.01, whole genome shotgun sequence	645015..645452	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNGPW010000021.1 Salmonella enterica strain PNUSAS388425 SAMN37657795-rid19580903.guided.12, whole genome shotgun sequence	22638..23075	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGPW010000002.1	562148..563018	99.656	871	0						
GCA_032316635.1_PDT001912312.1_genomic.fna	Salmonella_enterica	0.5195	652.264 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(p14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGPY010000001.1 Salmonella enterica strain PNUSAS388400 SAMN37657798-rid19580893.denovo.01, whole genome shotgun sequence	498149..498586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGPY010000027.1 Salmonella enterica strain PNUSAS388400 SAMN37657798-rid19580893.guided.08, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNGPY010000010.1 Salmonella enterica strain PNUSAS388400 SAMN37657798-rid19580893.denovo.11, whole genome shotgun sequence	17040..17682	enterobacteriales	IncFII(p14)	92.02	263 / 262	ABNGPY010000010.1 Salmonella enterica strain PNUSAS388400 SAMN37657798-rid19580893.denovo.11, whole genome shotgun sequence	33612..33870																																																avrA	ABNGPY010000003.1	498409..498970	99.645	563	0	avrA	ABNGPY010000003.1	498970..499228	98.842	259	9.72e-131
GCA_032316655.1_PDT001912309.1_genomic.fna	Salmonella_enterica	0.5211	494.746 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGQB010000002.1 Salmonella enterica strain PNUSAS388430 SAMN37657794-rid19580863.denovo.02, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGQB010000031.1 Salmonella enterica strain PNUSAS388430 SAMN37657794-rid19580863.guided.10, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGQB010000004.1	394780..395648	99.425	870	0						
GCA_032316675.1_PDT001912311.1_genomic.fna	Salmonella_enterica	0.5202	477.272 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGPZ010000001.1 Salmonella enterica strain PNUSAS388431 SAMN37657792-rid19580883.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGPZ010000023.1 Salmonella enterica strain PNUSAS388431 SAMN37657792-rid19580883.guided.16, whole genome shotgun sequence	23476..23913	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABNGPZ010000015.1 Salmonella enterica strain PNUSAS388431 SAMN37657792-rid19580883.denovo.17, whole genome shotgun sequence	32011..32384																																																						avrA	ABNGPZ010000002.1	553419..554288	99.54	870	0						
GCA_032316695.1_PDT001912310.1_genomic.fna	Salmonella_enterica	0.5223	532.915 KB	4	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNGQA010000002.1 Salmonella enterica strain PNUSAS388399 SAMN37657796-rid19580873.denovo.02, whole genome shotgun sequence	492161..492598	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNGQA010000026.1 Salmonella enterica strain PNUSAS388399 SAMN37657796-rid19580873.guided.17, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGQA010000003.1	496929..497797	99.655	869	0						
GCA_032316715.1_PDT001912307.1_genomic.fna	Salmonella_enterica	0.521	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGQE010000002.1 Salmonella enterica strain PNUSAS388426 SAMN37657791-rid19580843.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGQE010000045.1 Salmonella enterica strain PNUSAS388426 SAMN37657791-rid19580843.guided.17, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNGQE010000016.1 Salmonella enterica strain PNUSAS388426 SAMN37657791-rid19580843.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNGQE010000016.1 Salmonella enterica strain PNUSAS388426 SAMN37657791-rid19580843.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABNGQE010000001.1	401278..402146	100	869	0						
GCA_032316735.1_PDT001912304.1_genomic.fna	Salmonella_enterica	0.5215	194.965 KB	8	aroC_230,dnaN_523,hemD_245,hisD_427,purE_342,sucA_756,thrA_209	4530	7:g,z51:1,5	0		1	parC_p.T57S	0		aroC	100	100	aroC_230	dnaN	100	100	dnaN_523	hemD	100	100	hemD_245	hisD	100	100	hisD_427	purE	100	100	purE_342	sucA	100	100	sucA_756	thrA	100	100	thrA_209	7	g,z51	1,5	Salmonella enterica subspecies enterica (subspecies I)	Alamo		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032316755.1_PDT001912303.1_genomic.fna	Salmonella_enterica	0.5219	410.637 KB	5	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	2	ColRNAI,ColRNAI,IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNGQC010000001.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.denovo.01, whole genome shotgun sequence	404503..404940	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGQC010000020.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.denovo.24, whole genome shotgun sequence	548..1384	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGQC010000020.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.denovo.24, whole genome shotgun sequence	1384..2187	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNGQC010000021.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.denovo.27, whole genome shotgun sequence	1930..2745	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aac(6')-Iaa	99.09	438/438	ABNGQC010000031.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.guided.16, whole genome shotgun sequence	29836..30273	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGQC010000033.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.guided.23, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGQC010000033.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.guided.23, whole genome shotgun sequence	5879..6682	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNGQC010000035.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.guided.26, whole genome shotgun sequence	1..816	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	blaTEM-1A	100	861/861	ABNGQC010000020.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.denovo.24, whole genome shotgun sequence	3225..4085	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNGQC010000033.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.guided.23, whole genome shotgun sequence	3981..4841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	ABNGQC010000018.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.denovo.20, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNGQC010000036.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.guided.29, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNGQC010000020.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.denovo.24, whole genome shotgun sequence	2248..3063	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNGQC010000033.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.guided.23, whole genome shotgun sequence	5003..5818	Sulfamethoxazole	AY034138	tet(A)	100	1226/1275	ABNGQC010000026.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.denovo.34, whole genome shotgun sequence	692..1917	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	ABNGQC010000034.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.guided.25, whole genome shotgun sequence	788..1987	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABNGQC010000037.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.guided.33, whole genome shotgun sequence	713..1987	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNGQC010000021.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.denovo.27, whole genome shotgun sequence	810..940	enterobacteriales	ColRNAI	90.08	131 / 130	ABNGQC010000035.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.guided.26, whole genome shotgun sequence	1806..1936		enterobacteriales	IncR	100	251 / 251	ABNGQC010000018.1 Salmonella enterica strain PNUSAS388420 SAMN37657785-rid19580803.denovo.20, whole genome shotgun sequence	11449..11699																																									avrA	ABNGQC010000003.1	130389..131258	99.54	870	0						
GCA_032316775.1_PDT001912302.1_genomic.fna	Salmonella_enterica	0.5223	588.068 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGQF010000001.1 Salmonella enterica strain PNUSAS388424 SAMN37657789-rid19580793.denovo.01, whole genome shotgun sequence	444287..444724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGQF010000027.1 Salmonella enterica strain PNUSAS388424 SAMN37657789-rid19580793.guided.14, whole genome shotgun sequence	36656..37093	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032316795.1_PDT001912301.1_genomic.fna	Salmonella_enterica	0.5225	333.883 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGQG010000001.1 Salmonella enterica strain PNUSAS388423 SAMN37657786-rid19580783.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGQG010000029.1 Salmonella enterica strain PNUSAS388423 SAMN37657786-rid19580783.guided.15, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGQG010000003.1	39683..40552	99.655	870	0						
GCA_032316815.1_PDT001912299.1_genomic.fna	Salmonella_enterica	0.5211	299.348 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI(Gamma)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGQI010000002.1 Salmonella enterica strain PNUSAS388429 SAMN37657784-rid19580763.denovo.02, whole genome shotgun sequence	558422..558859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGQI010000041.1 Salmonella enterica strain PNUSAS388429 SAMN37657784-rid19580763.guided.22, whole genome shotgun sequence	31474..31911	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI(Gamma)	100	137 / 141	ABNGQI010000016.1 Salmonella enterica strain PNUSAS388429 SAMN37657784-rid19580763.denovo.16, whole genome shotgun sequence	67127..67263																																																						avrA	ABNGQI010000010.1	122091..122959	99.195	870	0						
GCA_032316835.1_PDT001912300.1_genomic.fna	Salmonella_enterica	0.5207	673.299 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGQH010000001.1 Salmonella enterica strain PNUSAS388428 SAMN37657782-rid19580773.denovo.01, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGQH010000024.1 Salmonella enterica strain PNUSAS388428 SAMN37657782-rid19580773.guided.13, whole genome shotgun sequence	9748..10185	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGQH010000003.1	496800..497668	99.425	870	0						
GCA_032316855.1_PDT001912298.1_genomic.fna	Salmonella_enterica	0.5174	186.639 KB	7	aroC_361,dnaN_327,hemD_258,hisD_415,purE_366,sucA_329,thrA_363	2416	60:z10:z39	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_361	dnaN	100	100	dnaN_327	hemD	100	100	hemD_258	hisD	100	100	hisD_415	purE	100	100	purE_366	sucA	100	100	sucA_329	thrA	100	100	thrA_363	60	z10	z39	Salmonella enterica subspecies salamae (subspecies II)	II 60:z10:z39	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	91.55	438/438	ABNGQJ010000007.1 Salmonella enterica strain PNUSAS388416 SAMN37657781-rid19580753.denovo.07, whole genome shotgun sequence	45760..46197	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	91.55	438/438	ABNGQJ010000058.1 Salmonella enterica strain PNUSAS388416 SAMN37657781-rid19580753.guided.28, whole genome shotgun sequence	30678..31115	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.78	441 / 445	ABNGQJ010000023.1 Salmonella enterica strain PNUSAS388416 SAMN37657781-rid19580753.denovo.23, whole genome shotgun sequence	25557..25996	enterobacteriales	IncFII(Yp)	91.67	216 / 230	ABNGQJ010000023.1 Salmonella enterica strain PNUSAS388416 SAMN37657781-rid19580753.denovo.23, whole genome shotgun sequence	26257..26471																																																avrA	ABNGQJ010000011.1	142118..142978	92.218	861	0						
GCA_032316875.1_PDT001912295.1_genomic.fna	Salmonella_enterica	0.5209	595.762 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGQM010000001.1 Salmonella enterica strain PNUSAS388414 SAMN37657748-rid19580723.denovo.01, whole genome shotgun sequence	398384..398821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGQM010000029.1 Salmonella enterica strain PNUSAS388414 SAMN37657748-rid19580723.guided.15, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABNGQM010000012.1 Salmonella enterica strain PNUSAS388414 SAMN37657748-rid19580723.denovo.12, whole genome shotgun sequence	51927..52188																																																						avrA	ABNGQM010000003.1	499554..500422	99.425	870	0						
GCA_032316895.1_PDT001912297.1_genomic.fna	Salmonella_enterica	0.5222	353.091 KB	5	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_19,thrA_12	582	8:z4,z23:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	z4,z23	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Chailey		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGQK010000001.1 Salmonella enterica strain PNUSAS388418 SAMN37657783-rid19580743.denovo.01, whole genome shotgun sequence	487649..488086	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGQK010000027.1 Salmonella enterica strain PNUSAS388418 SAMN37657783-rid19580743.guided.19, whole genome shotgun sequence	42411..42848	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGQK010000003.1	421711..422580	99.54	870	0						
GCA_032316915.1_PDT001912294.1_genomic.fna	Salmonella_enterica	0.5205	509.005 KB	3	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGQN010000001.1 Salmonella enterica strain PNUSAS388392 SAMN37657752-rid19580713.denovo.01, whole genome shotgun sequence	1322502..1322939	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGQN010000022.1 Salmonella enterica strain PNUSAS388392 SAMN37657752-rid19580713.guided.13, whole genome shotgun sequence	21952..22389	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNGQN010000011.1 Salmonella enterica strain PNUSAS388392 SAMN37657752-rid19580713.denovo.11, whole genome shotgun sequence	71147..71288																																																						avrA	ABNGQN010000002.1	558778..559647	99.425	870	0						
GCA_032316935.1_PDT001912292.1_genomic.fna	Salmonella_enterica	0.522	320.318 KB	5	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCRY)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGQL010000001.1 Salmonella enterica strain PNUSAS388411 SAMN37657750-rid19580693.denovo.01, whole genome shotgun sequence	169834..170271	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGQL010000029.1 Salmonella enterica strain PNUSAS388411 SAMN37657750-rid19580693.guided.15, whole genome shotgun sequence	42396..42833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABNGQL010000022.1 Salmonella enterica strain PNUSAS388411 SAMN37657750-rid19580693.denovo.24, whole genome shotgun sequence	8801..9393																																																																	
GCA_032316955.1_PDT001912291.1_genomic.fna	Salmonella_enterica	0.5196	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	4	acrB_p.R717Q,gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNGQO010000010.1 Salmonella enterica strain PNUSAS388415 SAMN37657745-rid19580683.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNGQO010000053.1 Salmonella enterica strain PNUSAS388415 SAMN37657745-rid19580683.guided.26, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										acrB p.R717Q	CGA -> CAA	R -> Q	Azithromycin	31730615	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																							
GCA_032316975.1_PDT001912288.1_genomic.fna	Salmonella_enterica	0.5204	223.58 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGQQ010000001.1 Salmonella enterica strain PNUSAS388412 SAMN37657746-rid19580653.denovo.01, whole genome shotgun sequence	590441..590878	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGQQ010000040.1 Salmonella enterica strain PNUSAS388412 SAMN37657746-rid19580653.denovo.45, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGQQ010000040.1 Salmonella enterica strain PNUSAS388412 SAMN37657746-rid19580653.denovo.45, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNGQQ010000057.1 Salmonella enterica strain PNUSAS388412 SAMN37657746-rid19580653.guided.21, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGQQ010000061.1 Salmonella enterica strain PNUSAS388412 SAMN37657746-rid19580653.guided.44, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGQQ010000061.1 Salmonella enterica strain PNUSAS388412 SAMN37657746-rid19580653.guided.44, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNGQQ010000048.1 Salmonella enterica strain PNUSAS388412 SAMN37657746-rid19580653.denovo.54, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNGQQ010000062.1 Salmonella enterica strain PNUSAS388412 SAMN37657746-rid19580653.guided.53, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNGQQ010000040.1 Salmonella enterica strain PNUSAS388412 SAMN37657746-rid19580653.denovo.45, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNGQQ010000061.1 Salmonella enterica strain PNUSAS388412 SAMN37657746-rid19580653.guided.44, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNGQQ010000037.1 Salmonella enterica strain PNUSAS388412 SAMN37657746-rid19580653.denovo.41, whole genome shotgun sequence	424..1629	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNGQQ010000060.1 Salmonella enterica strain PNUSAS388412 SAMN37657746-rid19580653.guided.40, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNGQQ010000002.1	515400..516269	99.885	870	0						
GCA_032316995.1_PDT001912286.1_genomic.fna	Salmonella_enterica	0.5215	393.363 KB	4	aroC_347,dnaN_394,hemD_78,hisD_496,purE_426,sucA_9,thrA_102	1549	8:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_347	dnaN	100	100	dnaN_394	hemD	100	100	hemD_78	hisD	100	100	hisD_496	purE	100	100	purE_426	sucA	100	100	sucA_9	thrA	100	100	thrA_102	8	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Altona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGQR010000001.1 Salmonella enterica strain PNUSAS388397 SAMN37657747-rid19580633.denovo.01, whole genome shotgun sequence	140260..140697	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGQR010000027.1 Salmonella enterica strain PNUSAS388397 SAMN37657747-rid19580633.guided.12, whole genome shotgun sequence	16433..16870	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGQR010000003.1	401300..402169	99.195	870	0						
GCA_032317015.1_PDT001912290.1_genomic.fna	Salmonella_enterica	0.5215	382.533 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGQP010000001.1 Salmonella enterica strain PNUSAS388391 SAMN37657753-rid19580673.denovo.01, whole genome shotgun sequence	381670..382107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGQP010000029.1 Salmonella enterica strain PNUSAS388391 SAMN37657753-rid19580673.guided.12, whole genome shotgun sequence	11042..11479	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGQP010000002.1	402645..403514	99.885	870	0						
GCA_032317055.1_PDT001912285.1_genomic.fna	Salmonella_enterica	0.5209	492.129 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGQS010000001.1 Salmonella enterica strain PNUSAS388393 SAMN37657744-rid19580623.denovo.01, whole genome shotgun sequence	414580..415017	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGQS010000021.1 Salmonella enterica strain PNUSAS388393 SAMN37657744-rid19580623.guided.16, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032317115.1_PDT001912266.1_genomic.fna	Salmonella_enterica	0.521	494.401 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGQT010000001.1 Salmonella enterica strain PNUSAS388291 SAMN37657315-rid19580173.denovo.01, whole genome shotgun sequence	422627..423064	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGQT010000031.1 Salmonella enterica strain PNUSAS388291 SAMN37657315-rid19580173.guided.09, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGQT010000003.1	394719..395587	99.425	870	0						
GCA_032317635.1_PDT001912308.1_genomic.fna	Salmonella_enterica	0.521	481.013 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGRH010000001.1 Salmonella enterica strain PNUSAS388419 SAMN37657788-rid19580853.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGRH010000024.1 Salmonella enterica strain PNUSAS388419 SAMN37657788-rid19580853.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNGRH010000020.1 Salmonella enterica strain PNUSAS388419 SAMN37657788-rid19580853.denovo.23, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGRH010000015.1 Salmonella enterica strain PNUSAS388419 SAMN37657788-rid19580853.denovo.16, whole genome shotgun sequence	48504..49146		enterobacteriales	IncFII(S)	100	262 / 262	ABNGRH010000015.1 Salmonella enterica strain PNUSAS388419 SAMN37657788-rid19580853.denovo.16, whole genome shotgun sequence	4251..4512																																									avrA	ABNGRH010000002.1	553312..554181	99.54	870	0						
GCA_032317675.1_PDT001912306.1_genomic.fna	Salmonella_enterica	0.5205	181.074 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGRJ010000001.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.denovo.01, whole genome shotgun sequence	259879..260316	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNGRJ010000028.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.denovo.31, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGRJ010000028.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.denovo.31, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNGRJ010000042.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.denovo.46, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNGRJ010000042.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.denovo.46, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNGRJ010000055.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.guided.13, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNGRJ010000058.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.guided.32, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGRJ010000058.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.guided.32, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNGRJ010000060.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.guided.48, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNGRJ010000060.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.guided.48, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNGRJ010000040.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.denovo.44, whole genome shotgun sequence	2878..4091	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNGRJ010000059.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.guided.47, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNGRJ010000028.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.denovo.31, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNGRJ010000058.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.guided.32, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNGRJ010000028.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.denovo.31, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGRJ010000058.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.guided.32, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNGRJ010000033.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.denovo.37, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX1	98.66	374 / 374	ABNGRJ010000029.1 Salmonella enterica strain PNUSAS388422 SAMN37657787-rid19580833.denovo.33, whole genome shotgun sequence	10524..10897																																																avrA	ABNGRJ010000003.1	39534..40403	99.655	870	0						
GCA_032317695.1_PDT001912296.1_genomic.fna	Salmonella_enterica	0.5197	737.175 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGRI010000001.1 Salmonella enterica strain PNUSAS388417 SAMN37657780-rid19580733.denovo.01, whole genome shotgun sequence	255871..256308	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGRI010000020.1 Salmonella enterica strain PNUSAS388417 SAMN37657780-rid19580733.guided.10, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGRI010000002.1	555955..556823	99.425	870	0						
GCA_032317715.1_PDT001912289.1_genomic.fna	Salmonella_enterica	0.5204	667.831 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNGRL010000001.1 Salmonella enterica strain PNUSAS388413 SAMN37657749-rid19580663.denovo.01, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNGRL010000021.1 Salmonella enterica strain PNUSAS388413 SAMN37657749-rid19580663.guided.09, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGRL010000003.1	491332..492200	99.425	870	0						
GCA_032317735.1_PDT001912287.1_genomic.fna	Salmonella_enterica	0.5198	183.582 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNGRK010000010.1 Salmonella enterica strain PNUSAS388394 SAMN37657743-rid19580643.denovo.10, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNGRK010000062.1 Salmonella enterica strain PNUSAS388394 SAMN37657743-rid19580643.guided.25, whole genome shotgun sequence	44301..44738	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNGRK010000024.1 Salmonella enterica strain PNUSAS388394 SAMN37657743-rid19580643.denovo.24, whole genome shotgun sequence	64392..65034																																																																	
GCA_032318095.1_PDT001832075.1_genomic.fna	Salmonella_enterica	0.5213	478.75 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGSD010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0003 SAMN36748279-rid18912753.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGSD010000022.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0003 SAMN36748279-rid18912753.guided.15, whole genome shotgun sequence	11620..12057	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGSD010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0003 SAMN36748279-rid18912753.denovo.13, whole genome shotgun sequence	49240..49882	enterobacteriales	IncFII(S)	100	262 / 262	ABNGSD010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0003 SAMN36748279-rid18912753.denovo.13, whole genome shotgun sequence	4987..5248																																																avrA	ABNGSD010000002.1	585482..586351	99.54	870	0						
GCA_032318115.1_PDT001832074.1_genomic.fna	Salmonella_enterica	0.521	490.113 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGSE010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0009 SAMN36748280-rid18913523.denovo.01, whole genome shotgun sequence	774542..774979	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGSE010000023.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0009 SAMN36748280-rid18913523.guided.13, whole genome shotgun sequence	11174..11611	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGSE010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0009 SAMN36748280-rid18913523.denovo.14, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABNGSE010000015.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0009 SAMN36748280-rid18913523.denovo.18, whole genome shotgun sequence	3404..3665																																																avrA	ABNGSE010000002.1	553373..554242	99.54	870	0						
GCA_032318235.1_PDT001832076.1_genomic.fna	Salmonella_enterica	0.521	291.904 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),ColpVC,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGSC010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-NCR-0006 SAMN36748278-rid18912763.denovo.01, whole genome shotgun sequence	369355..369792	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGSC010000045.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-NCR-0006 SAMN36748278-rid18912763.guided.29, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNGSC010000019.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-NCR-0006 SAMN36748278-rid18912763.denovo.19, whole genome shotgun sequence	45899..46714	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNGSC010000046.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-NCR-0006 SAMN36748278-rid18912763.guided.33, whole genome shotgun sequence	11525..12340	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNGSC010000019.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-NCR-0006 SAMN36748278-rid18912763.denovo.19, whole genome shotgun sequence	48891..50090	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGSC010000046.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-NCR-0006 SAMN36748278-rid18912763.guided.33, whole genome shotgun sequence	14517..15716	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	93.8	129 / 131	ABNGSC010000035.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-NCR-0006 SAMN36748278-rid18912763.denovo.39, whole genome shotgun sequence	1835..1963	enterobacteriales	ColpVC	96.89	193 / 193	ABNGSC010000038.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-NCR-0006 SAMN36748278-rid18912763.denovo.42, whole genome shotgun sequence	1524..1716		enterobacteriales	IncC	100	417 / 417	ABNGSC010000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-NCR-0006 SAMN36748278-rid18912763.denovo.32, whole genome shotgun sequence	23618..24034																																									avrA	ABNGSC010000004.1	129510..130379	99.885	870	0						
GCA_032318255.1_PDT001832077.1_genomic.fna	Salmonella_enterica	0.5212	478.724 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGSB010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0005 SAMN36748277-rid18913533.denovo.01, whole genome shotgun sequence	774542..774979	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGSB010000026.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0005 SAMN36748277-rid18913533.guided.17, whole genome shotgun sequence	11184..11621	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGSB010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0005 SAMN36748277-rid18913533.denovo.13, whole genome shotgun sequence	40524..41166	enterobacteriales	IncFII(S)	100	262 / 262	ABNGSB010000016.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0005 SAMN36748277-rid18913533.denovo.19, whole genome shotgun sequence	3407..3668																																																avrA	ABNGSB010000002.1	553373..554242	99.54	870	0						
GCA_032318275.1_PDT001832072.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGSG010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0011 SAMN36748282-rid18913513.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGSG010000026.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0011 SAMN36748282-rid18913513.guided.13, whole genome shotgun sequence	22903..23340	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGSG010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0011 SAMN36748282-rid18913513.denovo.14, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNGSG010000016.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-NCR-0011 SAMN36748282-rid18913513.denovo.19, whole genome shotgun sequence	3393..3654																																																avrA	ABNGSG010000002.1	553636..554505	99.54	870	0						
GCA_032318295.1_PDT001832073.1_genomic.fna	Salmonella_enterica	0.5197	321.687 KB	6	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFII(pSE11),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGSF010000014.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0004 SAMN36748281-rid18912743.denovo.14, whole genome shotgun sequence	84910..85347	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGSF010000060.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0004 SAMN36748281-rid18912743.guided.32, whole genome shotgun sequence	12512..12949	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNGSF010000028.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0004 SAMN36748281-rid18912743.denovo.30, whole genome shotgun sequence	14212..14471	enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNGSF010000021.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0004 SAMN36748281-rid18912743.denovo.22, whole genome shotgun sequence	41529..41670		enterobacteriales	IncX1	100	373 / 373	ABNGSF010000033.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0004 SAMN36748281-rid18912743.denovo.36, whole genome shotgun sequence	2153..2525																																									avrA	ABNGSF010000002.1	100719..101588	99.655	870	0						
GCA_032318315.1_PDT001832071.1_genomic.fna	Salmonella_enterica	0.5212	341.181 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGSH010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-MS-0005 SAMN36748283-rid18912733.denovo.02, whole genome shotgun sequence	207387..207824	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGSH010000045.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-MS-0005 SAMN36748283-rid18912733.guided.13, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNGSH010000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-MS-0005 SAMN36748283-rid18912733.denovo.19, whole genome shotgun sequence	36049..36691	enterobacteriales	IncFII(S)	100	262 / 262	ABNGSH010000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-NY-MS-0005 SAMN36748283-rid18912733.denovo.19, whole genome shotgun sequence	51776..52037																																																avrA	ABNGSH010000001.1	450798..451667	99.885	870	0						
GCA_032318335.1_PDT001832070.1_genomic.fna	Salmonella_enterica	0.5204	490.113 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGSI010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0007 SAMN36748284-rid18913503.denovo.01, whole genome shotgun sequence	774424..774861	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGSI010000024.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0007 SAMN36748284-rid18913503.guided.19, whole genome shotgun sequence	3297..3734	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	ABNGSI010000018.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0007 SAMN36748284-rid18913503.denovo.21, whole genome shotgun sequence	792..945	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGSI010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0007 SAMN36748284-rid18913503.denovo.13, whole genome shotgun sequence	48669..49311		enterobacteriales	IncFII(S)	100	262 / 262	ABNGSI010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0007 SAMN36748284-rid18913503.denovo.13, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNGSI010000014.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0007 SAMN36748284-rid18913503.denovo.15, whole genome shotgun sequence	32011..32384																																		avrA	ABNGSI010000002.1	553567..554436	99.54	870	0						
GCA_032318355.1_PDT001832069.1_genomic.fna	Salmonella_enterica	0.5207	478.75 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGSM010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0011 SAMN36748285-rid18913493.denovo.01, whole genome shotgun sequence	162136..162573	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGSM010000026.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0011 SAMN36748285-rid18913493.guided.12, whole genome shotgun sequence	40554..40991	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGSM010000013.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0011 SAMN36748285-rid18913493.denovo.15, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNGSM010000017.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SAL-22-VL-NY-MS-0011 SAMN36748285-rid18913493.denovo.20, whole genome shotgun sequence	3376..3637																																																avrA	ABNGSM010000002.1	585487..586356	99.54	870	0						
GCA_032318715.1_PDT001832053.1_genomic.fna	Salmonella_enterica	0.5219	397.498 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGTA010000001.1 Salmonella enterica subsp. enterica serovar Braenderup strain SAL-22-VL-NY-FL-0001 SAMN36748251-rid18913383.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGTA010000029.1 Salmonella enterica subsp. enterica serovar Braenderup strain SAL-22-VL-NY-FL-0001 SAMN36748251-rid18913383.guided.21, whole genome shotgun sequence	2167..2604	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNGTA010000011.1 Salmonella enterica subsp. enterica serovar Braenderup strain SAL-22-VL-NY-FL-0001 SAMN36748251-rid18913383.denovo.11, whole genome shotgun sequence	65904..67109	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNGTA010000026.1 Salmonella enterica subsp. enterica serovar Braenderup strain SAL-22-VL-NY-FL-0001 SAMN36748251-rid18913383.guided.18, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNGTA010000011.1 Salmonella enterica subsp. enterica serovar Braenderup strain SAL-22-VL-NY-FL-0001 SAMN36748251-rid18913383.denovo.11, whole genome shotgun sequence	73495..73636	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNGTA010000026.1 Salmonella enterica subsp. enterica serovar Braenderup strain SAL-22-VL-NY-FL-0001 SAMN36748251-rid18913383.guided.18, whole genome shotgun sequence	3169..3310																																																avrA	ABNGTA010000006.1	142516..143385	98.966	870	0						
GCA_032318735.1_PDT001832051.1_genomic.fna	Salmonella_enterica	0.5219	526.649 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGTB010000001.1 Salmonella enterica subsp. enterica serovar Braenderup strain SAL-22-VL-NY-FL-0002 SAMN36748253-rid18912673.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGTB010000024.1 Salmonella enterica subsp. enterica serovar Braenderup strain SAL-22-VL-NY-FL-0002 SAMN36748253-rid18912673.guided.11, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNGTB010000014.1 Salmonella enterica subsp. enterica serovar Braenderup strain SAL-22-VL-NY-FL-0002 SAMN36748253-rid18912673.denovo.17, whole genome shotgun sequence	1251..1381																																																						avrA	ABNGTB010000002.1	183135..184004	98.966	870	0						
GCA_032318755.1_PDT001832048.1_genomic.fna	Salmonella_enterica	0.5213	550.916 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNGTD010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain SAL-22-VL-NY-GA-0008 SAMN36748256-rid18913343.denovo.01, whole genome shotgun sequence	804501..804938	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNGTD010000024.1 Salmonella enterica subsp. enterica serovar Anatum strain SAL-22-VL-NY-GA-0008 SAMN36748256-rid18913343.guided.22, whole genome shotgun sequence	190..627	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNGTD010000019.1 Salmonella enterica subsp. enterica serovar Anatum strain SAL-22-VL-NY-GA-0008 SAMN36748256-rid18913343.denovo.21, whole genome shotgun sequence	547..675																																																						avrA	ABNGTD010000003.1	149711..150580	99.425	870	0						
GCA_032318775.1_PDT001832050.1_genomic.fna	Salmonella_enterica	0.5221	500.98 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGTC010000003.1 Salmonella enterica subsp. enterica serovar Montevideo strain SAL-22-VL-NY-GA-0005 SAMN36748254-rid18913363.denovo.03, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGTC010000031.1 Salmonella enterica subsp. enterica serovar Montevideo strain SAL-22-VL-NY-GA-0005 SAMN36748254-rid18913363.guided.23, whole genome shotgun sequence	8536..8973	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032318875.1_PDT001832046.1_genomic.fna	Salmonella_enterica	0.5204	488.955 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGTE010000008.1 Salmonella enterica subsp. enterica serovar Muenchen strain SAL-22-VL-NY-GA-0001 SAMN36748258-rid18912663.denovo.08, whole genome shotgun sequence	91162..91599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGTE010000045.1 Salmonella enterica subsp. enterica serovar Muenchen strain SAL-22-VL-NY-GA-0001 SAMN36748258-rid18912663.guided.34, whole genome shotgun sequence	775..1212	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNGTE010000019.1 Salmonella enterica subsp. enterica serovar Muenchen strain SAL-22-VL-NY-GA-0001 SAMN36748258-rid18912663.denovo.20, whole genome shotgun sequence	11523..12165																																																						avrA	ABNGTE010000005.1	203469..204338	99.425	870	0						
GCA_032319515.1_PDT001912305.1_genomic.fna	Salmonella_enterica	0.5213	373.072 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGUP010000001.1 Salmonella enterica strain PNUSAS388432 SAMN37657779-rid19580823.denovo.01, whole genome shotgun sequence	498140..498577	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGUP010000033.1 Salmonella enterica strain PNUSAS388432 SAMN37657779-rid19580823.guided.19, whole genome shotgun sequence	712..1149	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGUP010000010.1	94271..95140	99.425	870	0						
GCA_032321215.1_PDT001831909.1_genomic.fna	Salmonella_enterica	0.5215	356.377 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGXV010000001.1 Salmonella enterica strain PNUSAS367022 SAMN36746988-rid18911673.denovo.01, whole genome shotgun sequence	558228..558665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGXV010000043.1 Salmonella enterica strain PNUSAS367022 SAMN36746988-rid18911673.guided.29, whole genome shotgun sequence	3919..4356	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	ABNGXV010000028.1 Salmonella enterica strain PNUSAS367022 SAMN36746988-rid18911673.denovo.31, whole genome shotgun sequence	3229..3380																																																						avrA	ABNGXV010000015.1	39486..40354	99.195	870	0						
GCA_032321235.1_PDT001831910.1_genomic.fna	Salmonella_enterica	0.5212	208.73 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGXW010000005.1 Salmonella enterica strain PNUSAS367024 SAMN36746990-rid18912193.denovo.05, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGXW010000052.1 Salmonella enterica strain PNUSAS367024 SAMN36746990-rid18912193.guided.23, whole genome shotgun sequence	34471..34908	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGXW010000008.1	39588..40456	100	869	0						
GCA_032321275.1_PDT001831908.1_genomic.fna	Salmonella_enterica	0.5201	489.446 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGXU010000001.1 Salmonella enterica strain AG23-0217 SAMN36746754-rid18912183.denovo.01, whole genome shotgun sequence	774550..774987	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGXU010000026.1 Salmonella enterica strain AG23-0217 SAMN36746754-rid18912183.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGXU010000012.1 Salmonella enterica strain AG23-0217 SAMN36746754-rid18912183.denovo.14, whole genome shotgun sequence	40554..41196	enterobacteriales	IncFII(S)	100	262 / 262	ABNGXU010000017.1 Salmonella enterica strain AG23-0217 SAMN36746754-rid18912183.denovo.20, whole genome shotgun sequence	3405..3666		enterobacteriales	IncX1	98.66	374 / 374	ABNGXU010000014.1 Salmonella enterica strain AG23-0217 SAMN36746754-rid18912183.denovo.16, whole genome shotgun sequence	33735..34108																																									avrA	ABNGXU010000002.1	505826..506695	99.54	870	0						
GCA_032321295.1_PDT001831907.1_genomic.fna	Salmonella_enterica	0.5201	478.499 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGXY010000001.1 Salmonella enterica strain AG23-0218 SAMN36746755-rid18911663.denovo.01, whole genome shotgun sequence	774550..774987	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGXY010000026.1 Salmonella enterica strain AG23-0218 SAMN36746755-rid18911663.guided.12, whole genome shotgun sequence	29041..29478	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGXY010000011.1 Salmonella enterica strain AG23-0218 SAMN36746755-rid18911663.denovo.13, whole genome shotgun sequence	49279..49921	enterobacteriales	IncFII(S)	100	262 / 262	ABNGXY010000011.1 Salmonella enterica strain AG23-0218 SAMN36746755-rid18911663.denovo.13, whole genome shotgun sequence	5032..5293		enterobacteriales	IncX1	98.66	374 / 374	ABNGXY010000013.1 Salmonella enterica strain AG23-0218 SAMN36746755-rid18911663.denovo.15, whole genome shotgun sequence	33735..34108																																									avrA	ABNGXY010000002.1	505826..506695	99.54	870	0						
GCA_032321315.1_PDT001831906.1_genomic.fna	Salmonella_enterica	0.5208	478.111 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGXX010000001.1 Salmonella enterica strain AG23-0219 SAMN36746756-rid18912173.denovo.01, whole genome shotgun sequence	774543..774980	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGXX010000027.1 Salmonella enterica strain AG23-0219 SAMN36746756-rid18912173.guided.11, whole genome shotgun sequence	34145..34582	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNGXX010000018.1 Salmonella enterica strain AG23-0219 SAMN36746756-rid18912173.denovo.21, whole genome shotgun sequence	1165..1295	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGXX010000012.1 Salmonella enterica strain AG23-0219 SAMN36746756-rid18912173.denovo.14, whole genome shotgun sequence	40524..41166		enterobacteriales	IncFII(S)	100	262 / 262	ABNGXX010000016.1 Salmonella enterica strain AG23-0219 SAMN36746756-rid18912173.denovo.19, whole genome shotgun sequence	3412..3673																																									avrA	ABNGXX010000002.1	175198..176067	99.54	870	0						
GCA_032322795.1_PDT001831770.1_genomic.fna	Salmonella_enterica	0.5211	443.025 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGYN010000001.1 Salmonella enterica strain PNUSAS367320 SAMN36745683-rid18910493.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGYN010000029.1 Salmonella enterica strain PNUSAS367320 SAMN36745683-rid18910493.guided.20, whole genome shotgun sequence	2135..2572	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNGYN010000014.1 Salmonella enterica strain PNUSAS367320 SAMN36745683-rid18910493.denovo.14, whole genome shotgun sequence	5790..6323																																																						avrA	ABNGYN010000010.1	150695..151565	99.196	871	0						
GCA_032322815.1_PDT001831769.1_genomic.fna	Salmonella_enterica	0.5227	724.84 KB	2	aroC_22,dnaN_11,hemD_48,hisD_13,purE_102,sucA_107,thrA_4	284	9:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_13	purE	100	100	purE_102	sucA	100	100	sucA_107	thrA	100	100	thrA_4	9	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Gueuletapee		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNGYO010000001.1 Salmonella enterica strain PNUSAS367323 SAMN36745682-rid18910483.denovo.01, whole genome shotgun sequence	932277..932714	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNGYO010000023.1 Salmonella enterica strain PNUSAS367323 SAMN36745682-rid18910483.guided.20, whole genome shotgun sequence	598..1035	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGYO010000003.1	146930..147799	98.966	870	0						
GCA_032322835.1_PDT001831764.1_genomic.fna	Salmonella_enterica	0.5196	365.494 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGYS010000001.1 Salmonella enterica strain PNUSAS367322 SAMN36745688-rid18910433.denovo.01, whole genome shotgun sequence	486107..486544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGYS010000047.1 Salmonella enterica strain PNUSAS367322 SAMN36745688-rid18910433.guided.23, whole genome shotgun sequence	39632..40069	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNGYS010000009.1 Salmonella enterica strain PNUSAS367322 SAMN36745688-rid18910433.denovo.09, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNGYS010000049.1 Salmonella enterica strain PNUSAS367322 SAMN36745688-rid18910433.guided.30, whole genome shotgun sequence	8292..8714	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGYS010000002.1	163937..164806	99.195	870	0						
GCA_032322855.1_PDT001831766.1_genomic.fna	Salmonella_enterica	0.5188	279.769 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	15	aac(6')-Iaa,aac(3)-IId,aadA22,aph(3')-Ia,aac(6')-Iaa,aac(3)-IId,aadA22,aph(3')-Ia,blaCTX-M-55,blaTEM-1B,blaLAP-2,blaTEM-1B,blaLAP-2,blaCTX-M-55,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul3,tet(B),tet(B),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGYQ010000001.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.01, whole genome shotgun sequence	578852..579289	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNGYQ010000045.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.52, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNGYQ010000050.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.61, whole genome shotgun sequence	942..1733	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABNGYQ010000056.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.70, whole genome shotgun sequence	240..1055	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EF015636	aac(6')-Iaa	100	438/438	ABNGYQ010000067.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.guided.35, whole genome shotgun sequence	5565..6002	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNGYQ010000073.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.guided.53, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNGYQ010000077.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.guided.66, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABNGYQ010000079.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.guided.69, whole genome shotgun sequence	163..978	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EF015636	blaCTX-M-55	100	876/876	ABNGYQ010000036.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.38, whole genome shotgun sequence	3229..4104	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNGYQ010000036.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.38, whole genome shotgun sequence	6926..7786	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNGYQ010000036.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.38, whole genome shotgun sequence	9990..10847	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNGYQ010000069.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.guided.45, whole genome shotgun sequence	700..1560	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNGYQ010000069.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.guided.45, whole genome shotgun sequence	3764..4621	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaCTX-M-55	100	876/876	ABNGYQ010000071.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.guided.48, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	mph(A)	100	906/906	ABNGYQ010000046.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.55, whole genome shotgun sequence	2576..3481	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNGYQ010000050.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.61, whole genome shotgun sequence	1865..2686	Lincomycin	EU118119	mph(A)	100	906/906	ABNGYQ010000074.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.guided.54, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNGYQ010000077.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.guided.66, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABNGYQ010000039.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.42, whole genome shotgun sequence	876..2089	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNGYQ010000072.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.guided.50, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNGYQ010000042.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.47, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNGYQ010000070.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.guided.46, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNGYQ010000054.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.65, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNGYQ010000078.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.guided.68, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNGYQ010000034.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.36, whole genome shotgun sequence	13388..14179	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNGYQ010000076.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.guided.59, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNGYQ010000032.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.32, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNGYQ010000075.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.guided.58, whole genome shotgun sequence	1426..2631	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNGYQ010000054.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.65, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNGYQ010000078.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.guided.68, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNGYQ010000043.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.49, whole genome shotgun sequence	1939..2067	enterobacteriales	IncHI2	100	327 / 327	ABNGYQ010000017.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.17, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNGYQ010000026.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.26, whole genome shotgun sequence	8298..8927		enterobacteriales	IncN	100	513 / 514	ABNGYQ010000057.1 Salmonella enterica strain PNUSAS367327 SAMN36745687-rid18910453.denovo.71, whole genome shotgun sequence	470..982																																		avrA	ABNGYQ010000002.1	540741..541610	99.885	870	0						
GCA_032322875.1_PDT001831768.1_genomic.fna	Salmonella_enterica	0.5214	275.09 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGYP010000001.1 Salmonella enterica strain PNUSAS367325 SAMN36745686-rid18910473.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGYP010000044.1 Salmonella enterica strain PNUSAS367325 SAMN36745686-rid18910473.guided.23, whole genome shotgun sequence	33990..34427	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGYP010000003.1	208058..208926	99.77	870	0						
GCA_032322895.1_PDT001831765.1_genomic.fna	Salmonella_enterica	0.5214	377.05 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGYR010000004.1 Salmonella enterica strain PNUSAS367319 SAMN36745685-rid18910443.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGYR010000044.1 Salmonella enterica strain PNUSAS367319 SAMN36745685-rid18910443.guided.24, whole genome shotgun sequence	16317..16754	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNGYR010000015.1 Salmonella enterica strain PNUSAS367319 SAMN36745685-rid18910443.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNGYR010000015.1 Salmonella enterica strain PNUSAS367319 SAMN36745685-rid18910443.denovo.15, whole genome shotgun sequence	30406..30667																																																avrA	ABNGYR010000001.1	481928..482796	100	869	0						
GCA_032322915.1_PDT001831763.1_genomic.fna	Salmonella_enterica	0.5212	604.441 KB	2	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGYT010000001.1 Salmonella enterica strain PNUSAS367326 SAMN36745684-rid18910423.denovo.01, whole genome shotgun sequence	701746..702183	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGYT010000022.1 Salmonella enterica strain PNUSAS367326 SAMN36745684-rid18910423.guided.09, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	97.71	262 / 262	ABNGYT010000010.1 Salmonella enterica strain PNUSAS367326 SAMN36745684-rid18910423.denovo.11, whole genome shotgun sequence	29534..29793																																																						avrA	ABNGYT010000002.1	509708..510574	99.08	870	0						
GCA_032322935.1_PDT001831761.1_genomic.fna	Salmonella_enterica	0.521	421.653 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNGYU010000001.1 Salmonella enterica strain PNUSAS367321 SAMN36745639-rid18910403.denovo.01, whole genome shotgun sequence	774542..774979	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNGYU010000026.1 Salmonella enterica strain PNUSAS367321 SAMN36745639-rid18910403.guided.13, whole genome shotgun sequence	22103..22540	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNGYU010000013.1 Salmonella enterica strain PNUSAS367321 SAMN36745639-rid18910403.denovo.14, whole genome shotgun sequence	40575..41217	enterobacteriales	IncFII(S)	100	262 / 262	ABNGYU010000017.1 Salmonella enterica strain PNUSAS367321 SAMN36745639-rid18910403.denovo.20, whole genome shotgun sequence	3438..3699																																																avrA	ABNGYU010000002.1	175109..175978	99.54	870	0						
GCA_032322955.1_PDT001831760.1_genomic.fna	Salmonella_enterica	0.5215	261.234 KB	6	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGYV010000001.1 Salmonella enterica strain PNUSAS367324 SAMN36745636-rid18910393.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGYV010000041.1 Salmonella enterica strain PNUSAS367324 SAMN36745636-rid18910393.guided.22, whole genome shotgun sequence	44293..44730	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNGYV010000021.1 Salmonella enterica strain PNUSAS367324 SAMN36745636-rid18910393.denovo.21, whole genome shotgun sequence	2806..3339																																																						avrA	ABNGYV010000008.1	188420..189289	99.54	870	0						
GCA_032322975.1_PDT001831759.1_genomic.fna	Salmonella_enterica	0.5215	382.677 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNGYW010000001.1 Salmonella enterica strain PNUSAS367328 SAMN36745638-rid18910383.denovo.01, whole genome shotgun sequence	168033..168470	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNGYW010000031.1 Salmonella enterica strain PNUSAS367328 SAMN36745638-rid18910383.guided.21, whole genome shotgun sequence	2381..2818	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGYW010000002.1	145182..146051	99.31	870	0						
GCA_032323015.1_PDT001831588.1_genomic.fna	Salmonella_enterica	0.5232	81.434 KB	18	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	4	aac(6')-Iaa,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),Col156,IncQ1	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGYY010000054.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323833 SAMN36745653-rid18908673.denovo.055, whole genome shotgun sequence	14159..14596	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	671/804	ABNGYY010000071.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323833 SAMN36745653-rid18908673.denovo.075, whole genome shotgun sequence	8803..9473	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNGYY010000109.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323833 SAMN36745653-rid18908673.guided.072, whole genome shotgun sequence	10202..10639	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	695/804	ABNGYY010000110.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323833 SAMN36745653-rid18908673.guided.074, whole genome shotgun sequence	2686..3380	Streptomycin	AF321551	sul2	100	816/816	ABNGYY010000071.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323833 SAMN36745653-rid18908673.denovo.075, whole genome shotgun sequence	85..900	Sulfamethoxazole	FN995456	sul2	100	816/816	ABNGYY010000110.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323833 SAMN36745653-rid18908673.guided.074, whole genome shotgun sequence	1810..2625	Sulfamethoxazole	FN995456	tet(A)	100	1200/1200	ABNGYY010000071.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323833 SAMN36745653-rid18908673.denovo.075, whole genome shotgun sequence	6703..7902	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGYY010000110.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323833 SAMN36745653-rid18908673.guided.074, whole genome shotgun sequence	4281..5480	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNGYY010000082.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323833 SAMN36745653-rid18908673.denovo.086, whole genome shotgun sequence	186..316	enterobacteriales	Col156	94.81	154 / 154	ABNGYY010000076.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323833 SAMN36745653-rid18908673.denovo.080, whole genome shotgun sequence	1744..1897		enterobacteriales	IncQ1	100	796 / 796	ABNGYY010000071.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323833 SAMN36745653-rid18908673.denovo.075, whole genome shotgun sequence	2240..3035																																																				
GCA_032323035.1_PDT001831587.1_genomic.fna	Salmonella_enterica	0.5215	82.63 KB	17	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII	aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGYZ010000028.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12323834 SAMN36745651-rid18908663.denovo.028, whole genome shotgun sequence	52303..52740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGYZ010000108.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12323834 SAMN36745651-rid18908663.guided.045, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII	100	261 / 261	ABNGYZ010000034.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12323834 SAMN36745651-rid18908663.denovo.034, whole genome shotgun sequence	23838..24098																																																																	
GCA_032323055.1_PDT001831586.1_genomic.fna	Salmonella_enterica	0.522	72.576 KB	21	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:-	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	-	Salmonella enterica subspecies enterica (subspecies I)	I -:r:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGZA010000007.1 Salmonella enterica subsp. enterica strain FSIS12323830 SAMN36745640-rid18908653.denovo.007, whole genome shotgun sequence	83723..84160	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNGZA010000068.1 Salmonella enterica subsp. enterica strain FSIS12323830 SAMN36745640-rid18908653.denovo.069, whole genome shotgun sequence	18808..19599	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGZA010000068.1 Salmonella enterica subsp. enterica strain FSIS12323830 SAMN36745640-rid18908653.denovo.069, whole genome shotgun sequence	18808..19599	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNGZA010000123.1 Salmonella enterica subsp. enterica strain FSIS12323830 SAMN36745640-rid18908653.guided.089, whole genome shotgun sequence	7203..7640	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNGZA010000124.1 Salmonella enterica subsp. enterica strain FSIS12323830 SAMN36745640-rid18908653.guided.094, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGZA010000124.1 Salmonella enterica subsp. enterica strain FSIS12323830 SAMN36745640-rid18908653.guided.094, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNGZA010000068.1 Salmonella enterica subsp. enterica strain FSIS12323830 SAMN36745640-rid18908653.denovo.069, whole genome shotgun sequence	17464..18303	Sulfamethoxazole	U12338	sul1	100	840/840	ABNGZA010000124.1 Salmonella enterica subsp. enterica strain FSIS12323830 SAMN36745640-rid18908653.guided.094, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNGZA010000068.1 Salmonella enterica subsp. enterica strain FSIS12323830 SAMN36745640-rid18908653.denovo.069, whole genome shotgun sequence	3748..4947	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGZA010000121.1 Salmonella enterica subsp. enterica strain FSIS12323830 SAMN36745640-rid18908653.guided.084, whole genome shotgun sequence	7924..9123	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNGZA010000064.1 Salmonella enterica subsp. enterica strain FSIS12323830 SAMN36745640-rid18908653.denovo.065, whole genome shotgun sequence	9109..9668																																																						avrA	ABNGZA010000020.1	39540..40409	99.655	870	0						
GCA_032323075.1_PDT001831583.1_genomic.fna	Salmonella_enterica	0.5232	83.604 KB	18	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGZC010000052.1 Salmonella enterica subsp. enterica serovar London strain FSIS12323832 SAMN36745643-rid18908623.denovo.052, whole genome shotgun sequence	13062..13499	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGZC010000112.1 Salmonella enterica subsp. enterica serovar London strain FSIS12323832 SAMN36745643-rid18908623.guided.062, whole genome shotgun sequence	9181..9618	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNGZC010000090.1 Salmonella enterica subsp. enterica serovar London strain FSIS12323832 SAMN36745643-rid18908623.denovo.093, whole genome shotgun sequence	557..687																																																						avrA	ABNGZC010000020.1	36960..37829	99.425	870	0						
GCA_032323095.1_PDT001831585.1_genomic.fna	Salmonella_enterica	0.5231	56.43 KB	25	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	4	Col156,Col440I,ColpVC,IncQ1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNGZB010000020.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.denovo.020, whole genome shotgun sequence	12734..13171	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGZB010000112.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.denovo.116, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNGZB010000112.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.denovo.116, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGZB010000112.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.denovo.116, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGZB010000112.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.denovo.116, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGZB010000112.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.denovo.116, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNGZB010000144.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.guided.066, whole genome shotgun sequence	14196..14633	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGZB010000147.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.guided.113, whole genome shotgun sequence	1679..2515	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNGZB010000147.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.guided.113, whole genome shotgun sequence	877..1679	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGZB010000147.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.guided.113, whole genome shotgun sequence	876..1679	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGZB010000147.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.guided.113, whole genome shotgun sequence	876..1679	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGZB010000147.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.guided.113, whole genome shotgun sequence	876..1679	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNGZB010000115.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.denovo.120, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGZB010000148.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.guided.118, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	96.1	154 / 154	ABNGZB010000119.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.denovo.124, whole genome shotgun sequence	483..636	enterobacteriales	Col440I	93.64	110 / 114	ABNGZB010000122.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.denovo.127, whole genome shotgun sequence	1566..1675		enterobacteriales	ColpVC	98.96	193 / 193	ABNGZB010000126.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.denovo.131, whole genome shotgun sequence	799..991		enterobacteriales	IncQ1	100	796 / 796	ABNGZB010000105.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323827 SAMN36745646-rid18908643.denovo.108, whole genome shotgun sequence	292..1087																																		avrA	ABNGZB010000021.1	61660..62529	99.655	870	0						
GCA_032323115.1_PDT001831582.1_genomic.fna	Salmonella_enterica	0.5206	106.758 KB	14	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGZD010000013.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323828 SAMN36745647-rid18908613.denovo.13, whole genome shotgun sequence	83051..83488	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGZD010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323828 SAMN36745647-rid18908613.guided.50, whole genome shotgun sequence	14449..14886	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	100	373 / 373	ABNGZD010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323828 SAMN36745647-rid18908613.denovo.56, whole genome shotgun sequence	2153..2525																																																						avrA	ABNGZD010000003.1	39594..40463	99.655	870	0						
GCA_032323135.1_PDT001831581.1_genomic.fna	Salmonella_enterica	0.5202	77.209 KB	21	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGZE010000010.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323829 SAMN36745637-rid18908603.denovo.010, whole genome shotgun sequence	86590..87027	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGZE010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323829 SAMN36745637-rid18908603.denovo.083, whole genome shotgun sequence	6176..7012	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNGZE010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323829 SAMN36745637-rid18908603.denovo.083, whole genome shotgun sequence	7012..7815	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNGZE010000177.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323829 SAMN36745637-rid18908603.guided.050, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGZE010000180.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323829 SAMN36745637-rid18908603.guided.104, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNGZE010000180.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323829 SAMN36745637-rid18908603.guided.104, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNGZE010000117.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323829 SAMN36745637-rid18908603.denovo.121, whole genome shotgun sequence	2286..3491	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNGZE010000181.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323829 SAMN36745637-rid18908603.guided.122, whole genome shotgun sequence	2218..3423	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNGZE010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323829 SAMN36745637-rid18908603.denovo.120, whole genome shotgun sequence	1155..1836	enterobacteriales	IncFII	96.95	262 / 261	ABNGZE010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323829 SAMN36745637-rid18908603.denovo.083, whole genome shotgun sequence	5292..5553		enterobacteriales	IncFII	96.95	262 / 261	ABNGZE010000180.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323829 SAMN36745637-rid18908603.guided.104, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNGZE010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323829 SAMN36745637-rid18908603.denovo.101, whole genome shotgun sequence	4479..4620		enterobacteriales	IncX1	100	373 / 373	ABNGZE010000138.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323829 SAMN36745637-rid18908603.denovo.143, whole genome shotgun sequence	1127..1499																											avrA	ABNGZE010000012.1	102634..103503	99.655	870	0						
GCA_032323155.1_PDT001831580.1_genomic.fna	Salmonella_enterica	0.5232	136.561 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aac(3)-VIa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,aac(3)-VIa,sul1,sul1	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGZF010000004.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323802 SAMN36745564-rid18908593.denovo.04, whole genome shotgun sequence	154334..154771	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNGZF010000018.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323802 SAMN36745564-rid18908593.denovo.18, whole genome shotgun sequence	72922..73824	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	99.75	792/792	ABNGZF010000018.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323802 SAMN36745564-rid18908593.denovo.18, whole genome shotgun sequence	71967..72758	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGZF010000018.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323802 SAMN36745564-rid18908593.denovo.18, whole genome shotgun sequence	71967..72758	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNGZF010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323802 SAMN36745564-rid18908593.guided.44, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNGZF010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323802 SAMN36745564-rid18908593.guided.57, whole genome shotgun sequence	5883..6674	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGZF010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323802 SAMN36745564-rid18908593.guided.57, whole genome shotgun sequence	5883..6674	Spectinomycin, Streptomycin	JQ414041	aac(3)-VIa	100	903/903	ABNGZF010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323802 SAMN36745564-rid18908593.guided.69, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	sul1	100	840/840	ABNGZF010000018.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323802 SAMN36745564-rid18908593.denovo.18, whole genome shotgun sequence	79824..80663	Sulfamethoxazole	U12338	sul1	100	840/840	ABNGZF010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323802 SAMN36745564-rid18908593.guided.50, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNGZF010000018.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323802 SAMN36745564-rid18908593.denovo.18, whole genome shotgun sequence	90185..90326	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNGZF010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323802 SAMN36745564-rid18908593.guided.50, whole genome shotgun sequence	10739..10880																																																avrA	ABNGZF010000015.1	125272..126141	99.655	870	0						
GCA_032323175.1_PDT001831578.1_genomic.fna	Salmonella_enterica	0.5218	112.382 KB	14	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGZH010000004.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323801 SAMN36745562-rid18908573.denovo.04, whole genome shotgun sequence	20857..21294	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGZH010000090.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323801 SAMN36745562-rid18908573.guided.59, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNGZH010000071.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323801 SAMN36745562-rid18908573.denovo.74, whole genome shotgun sequence	358..488	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNGZH010000061.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323801 SAMN36745562-rid18908573.denovo.64, whole genome shotgun sequence	10102..10243																																																											
GCA_032323195.1_PDT001831579.1_genomic.fna	Salmonella_enterica	0.5228	50.213 KB	32	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGZG010000017.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323803 SAMN36745566-rid18908583.denovo.017, whole genome shotgun sequence	13093..13530	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNGZG010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323803 SAMN36745566-rid18908583.denovo.095, whole genome shotgun sequence	12419..13321	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNGZG010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323803 SAMN36745566-rid18908583.denovo.095, whole genome shotgun sequence	13485..14276	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNGZG010000182.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323803 SAMN36745566-rid18908583.guided.080, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNGZG010000186.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323803 SAMN36745566-rid18908583.guided.134, whole genome shotgun sequence	37..939	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNGZG010000189.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323803 SAMN36745566-rid18908583.guided.178, whole genome shotgun sequence	123..914	Spectinomycin, Streptomycin	JQ414041	sul2	100	816/816	ABNGZG010000025.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323803 SAMN36745566-rid18908583.denovo.025, whole genome shotgun sequence	5050..5865	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNGZG010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323803 SAMN36745566-rid18908583.denovo.095, whole genome shotgun sequence	5580..6419	Sulfamethoxazole	X15024	sul2	100	816/816	ABNGZG010000183.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323803 SAMN36745566-rid18908583.guided.096, whole genome shotgun sequence	16398..17213	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNGZG010000185.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323803 SAMN36745566-rid18908583.guided.131, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABNGZG010000025.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323803 SAMN36745566-rid18908583.denovo.025, whole genome shotgun sequence	1674..2873	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNGZG010000154.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323803 SAMN36745566-rid18908583.denovo.162, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABNGZG010000187.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323803 SAMN36745566-rid18908583.guided.148, whole genome shotgun sequence	1676..2875	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNGZG010000188.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323803 SAMN36745566-rid18908583.guided.161, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNGZG010000140.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323803 SAMN36745566-rid18908583.denovo.146, whole genome shotgun sequence	371..501																																																						avrA	ABNGZG010000018.1	61654..62523	99.885	870	0						
GCA_032323215.1_PDT001831577.1_genomic.fna	Salmonella_enterica	0.5209	79.22 KB	19	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNGZI010000015.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12323826 SAMN36745554-rid18908563.denovo.015, whole genome shotgun sequence	75577..76014	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNGZI010000143.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12323826 SAMN36745554-rid18908563.guided.066, whole genome shotgun sequence	10480..10917	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNGZI010000004.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12323826 SAMN36745554-rid18908563.denovo.004, whole genome shotgun sequence	135771..136193	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNGZI010000142.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12323826 SAMN36745554-rid18908563.guided.064, whole genome shotgun sequence	18574..18996	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.08	131 / 131	ABNGZI010000085.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12323826 SAMN36745554-rid18908563.denovo.089, whole genome shotgun sequence	709..839	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNGZI010000097.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12323826 SAMN36745554-rid18908563.denovo.101, whole genome shotgun sequence	186..316		enterobacteriales	Col440I	94.59	111 / 114	ABNGZI010000092.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12323826 SAMN36745554-rid18908563.denovo.096, whole genome shotgun sequence	3175..3285																																									avrA	ABNGZI010000003.1	102322..103191	99.655	870	0						
GCA_032323235.1_PDT001831576.1_genomic.fna	Salmonella_enterica	0.5231	119.284 KB	13	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGZJ010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323824 SAMN36745552-rid18908553.denovo.01, whole genome shotgun sequence	140602..141039	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGZJ010000083.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323824 SAMN36745552-rid18908553.guided.37, whole genome shotgun sequence	989..1426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032323255.1_PDT001831575.1_genomic.fna	Salmonella_enterica	0.5184	98.087 KB	14	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	Col(pHAD28),IncHI2,IncHI2A	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNGZK010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.denovo.001, whole genome shotgun sequence	344936..345373	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGZK010000049.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.denovo.050, whole genome shotgun sequence	13114..13950	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNGZK010000049.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.denovo.050, whole genome shotgun sequence	12312..13114	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGZK010000049.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.denovo.050, whole genome shotgun sequence	12311..13114	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGZK010000049.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.denovo.050, whole genome shotgun sequence	12311..13114	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGZK010000049.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.denovo.050, whole genome shotgun sequence	12311..13114	Streptomycin	AF321550	aac(6')-Iaa	99.09	438/438	ABNGZK010000100.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.guided.037, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGZK010000102.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.guided.061, whole genome shotgun sequence	13145..13981	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNGZK010000102.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.guided.061, whole genome shotgun sequence	12343..13145	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGZK010000102.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.guided.061, whole genome shotgun sequence	12342..13145	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGZK010000102.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.guided.061, whole genome shotgun sequence	12342..13145	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGZK010000102.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.guided.061, whole genome shotgun sequence	12342..13145	Streptomycin	AF321550	tet(B)	100	1206/1206	ABNGZK010000077.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.denovo.081, whole genome shotgun sequence	2301..3506	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNGZK010000104.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.guided.082, whole genome shotgun sequence	2213..3418	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNGZK010000074.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.denovo.078, whole genome shotgun sequence	2208..2338	enterobacteriales	IncHI2	100	327 / 327	ABNGZK010000047.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.denovo.048, whole genome shotgun sequence	24293..24619		enterobacteriales	IncHI2A	99.52	630 / 630	ABNGZK010000063.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323823 SAMN36745551-rid18908543.denovo.066, whole genome shotgun sequence	2809..3438																																									avrA	ABNGZK010000003.1	107722..108591	99.54	870	0						
GCA_032323275.1_PDT001831574.1_genomic.fna	Salmonella_enterica	0.522	158.959 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aadA1,aadA1,aac(3)-IV,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGZL010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323825 SAMN36745553-rid18908533.denovo.01, whole genome shotgun sequence	477817..478254	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNGZL010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323825 SAMN36745553-rid18908533.denovo.43, whole genome shotgun sequence	18451..19242	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGZL010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323825 SAMN36745553-rid18908533.denovo.43, whole genome shotgun sequence	18451..19242	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNGZL010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323825 SAMN36745553-rid18908533.denovo.57, whole genome shotgun sequence	4424..5449	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNGZL010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323825 SAMN36745553-rid18908533.denovo.57, whole genome shotgun sequence	5678..6454	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNGZL010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323825 SAMN36745553-rid18908533.guided.45, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNGZL010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323825 SAMN36745553-rid18908533.guided.59, whole genome shotgun sequence	258..1283	Hygromycin	V01499	aadA1	99.75	792/792	ABNGZL010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323825 SAMN36745553-rid18908533.guided.60, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGZL010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323825 SAMN36745553-rid18908533.guided.60, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(3)-IV	99.87	777/777	ABNGZL010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323825 SAMN36745553-rid18908533.guided.84, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aac(3)-IV	100	777/777	ABNGZL010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323825 SAMN36745553-rid18908533.guided.85, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNGZL010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323825 SAMN36745553-rid18908533.denovo.43, whole genome shotgun sequence	17107..17946	Sulfamethoxazole	U12338	sul1	100	840/840	ABNGZL010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323825 SAMN36745553-rid18908533.guided.60, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNGZL010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323825 SAMN36745553-rid18908533.denovo.43, whole genome shotgun sequence	3391..4590	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGZL010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323825 SAMN36745553-rid18908533.guided.54, whole genome shotgun sequence	3505..4704	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																															gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNGZL010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323825 SAMN36745553-rid18908533.denovo.40, whole genome shotgun sequence	9109..9668																																																						avrA	ABNGZL010000013.1	124381..125250	99.655	870	0						
GCA_032323295.1_PDT001831573.1_genomic.fna	Salmonella_enterica	0.5226	259.384 KB	7	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNGZM010000003.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323835 SAMN36745555-rid18908523.denovo.03, whole genome shotgun sequence	377117..377554	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGZM010000037.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323835 SAMN36745555-rid18908523.denovo.40, whole genome shotgun sequence	2494..3330	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGZM010000037.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323835 SAMN36745555-rid18908523.denovo.40, whole genome shotgun sequence	3330..4133	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	ABNGZM010000051.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323835 SAMN36745555-rid18908523.guided.28, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGZM010000054.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323835 SAMN36745555-rid18908523.guided.42, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGZM010000054.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323835 SAMN36745555-rid18908523.guided.42, whole genome shotgun sequence	5879..6682	Streptomycin	AF321551	blaTEM-1A	100	861/861	ABNGZM010000037.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323835 SAMN36745555-rid18908523.denovo.40, whole genome shotgun sequence	5171..6031	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNGZM010000054.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323835 SAMN36745555-rid18908523.guided.42, whole genome shotgun sequence	3981..4841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	ABNGZM010000042.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323835 SAMN36745555-rid18908523.denovo.47, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNGZM010000056.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323835 SAMN36745555-rid18908523.guided.48, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNGZM010000037.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323835 SAMN36745555-rid18908523.denovo.40, whole genome shotgun sequence	4194..5009	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNGZM010000054.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323835 SAMN36745555-rid18908523.guided.42, whole genome shotgun sequence	5003..5818	Sulfamethoxazole	AY034138	tet(A)	100	1233/1275	ABNGZM010000037.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323835 SAMN36745555-rid18908523.denovo.40, whole genome shotgun sequence	1..1233	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	ABNGZM010000055.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323835 SAMN36745555-rid18908523.guided.44, whole genome shotgun sequence	788..1987	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABNGZM010000057.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323835 SAMN36745555-rid18908523.guided.53, whole genome shotgun sequence	713..1987	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNGZM010000035.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323835 SAMN36745555-rid18908523.denovo.38, whole genome shotgun sequence	6864..7114																																																						avrA	ABNGZM010000001.1	183404..184273	99.54	870	0						
GCA_032323315.1_PDT001831572.1_genomic.fna	Salmonella_enterica	0.5222	96.703 KB	16	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGZN010000029.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323821 SAMN36745541-rid18908513.denovo.029, whole genome shotgun sequence	52241..52678	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGZN010000100.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323821 SAMN36745541-rid18908513.guided.053, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABNGZN010000074.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323821 SAMN36745541-rid18908513.denovo.078, whole genome shotgun sequence	2133..2241	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNGZN010000053.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323821 SAMN36745541-rid18908513.denovo.055, whole genome shotgun sequence	4405..4546																																																											
GCA_032323335.1_PDT001831570.1_genomic.fna	Salmonella_enterica	0.5227	203.759 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGZP010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323820 SAMN36745540-rid18908493.denovo.01, whole genome shotgun sequence	477880..478317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNGZP010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323820 SAMN36745540-rid18908493.guided.41, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGZP010000006.1	149859..150728	99.655	870	0						
GCA_032323355.1_PDT001831571.1_genomic.fna	Salmonella_enterica	0.522	122.607 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNGZO010000002.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.denovo.002, whole genome shotgun sequence	62387..62824	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNGZO010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.denovo.055, whole genome shotgun sequence	11970..12761	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGZO010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.denovo.055, whole genome shotgun sequence	11970..12761	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNGZO010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.denovo.061, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNGZO010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.denovo.061, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNGZO010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.guided.023, whole genome shotgun sequence	30365..30802	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNGZO010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.guided.057, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNGZO010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.guided.057, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNGZO010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.guided.073, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNGZO010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.guided.073, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNGZO010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.denovo.061, whole genome shotgun sequence	8678..9891	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNGZO010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.guided.071, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNGZO010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.denovo.055, whole genome shotgun sequence	10626..11465	Sulfamethoxazole	U12338	sul1	100	840/840	ABNGZO010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.guided.057, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNGZO010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.denovo.063, whole genome shotgun sequence	1778..2977	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGZO010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.guided.069, whole genome shotgun sequence	1819..3018	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNGZO010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323822 SAMN36745542-rid18908503.denovo.053, whole genome shotgun sequence	13969..14528																																																						avrA	ABNGZO010000007.1	93814..94683	99.655	870	0						
GCA_032323375.1_PDT001831569.1_genomic.fna	Salmonella_enterica	0.5212	88.421 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGZQ010000008.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323819 SAMN36745539-rid18908483.denovo.008, whole genome shotgun sequence	15471..15908	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGZQ010000101.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323819 SAMN36745539-rid18908483.guided.064, whole genome shotgun sequence	4825..5262	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNGZQ010000079.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323819 SAMN36745539-rid18908483.denovo.083, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNGZQ010000103.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323819 SAMN36745539-rid18908483.guided.082, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNGZQ010000079.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323819 SAMN36745539-rid18908483.denovo.083, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNGZQ010000103.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323819 SAMN36745539-rid18908483.guided.082, whole genome shotgun sequence	2517..2647																																																avrA	ABNGZQ010000006.1	107946..108814	99.77	870	0						
GCA_032323385.1_PDT001831568.1_genomic.fna	Salmonella_enterica	0.5207	169.871 KB	9	aroC_347,dnaN_394,hemD_78,hisD_496,purE_426,sucA_9,thrA_102	1549	8:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_347	dnaN	100	100	dnaN_394	hemD	100	100	hemD_78	hisD	100	100	hisD_496	purE	100	100	purE_426	sucA	100	100	sucA_9	thrA	100	100	thrA_102	8	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Altona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGZR010000001.1 Salmonella enterica subsp. enterica serovar Altona strain FSIS12323818 SAMN36745521-rid18908473.denovo.01, whole genome shotgun sequence	645046..645483	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGZR010000061.1 Salmonella enterica subsp. enterica serovar Altona strain FSIS12323818 SAMN36745521-rid18908473.guided.22, whole genome shotgun sequence	16433..16870	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGZR010000025.1	22215..23084	99.195	870	0						
GCA_032323415.1_PDT001831567.1_genomic.fna	Salmonella_enterica	0.5207	109.472 KB	16	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGZS010000015.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323817 SAMN36745520-rid18908463.denovo.15, whole genome shotgun sequence	31197..31634	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNGZS010000057.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323817 SAMN36745520-rid18908463.denovo.59, whole genome shotgun sequence	6190..6992	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGZS010000057.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323817 SAMN36745520-rid18908463.denovo.59, whole genome shotgun sequence	6190..6993	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGZS010000057.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323817 SAMN36745520-rid18908463.denovo.59, whole genome shotgun sequence	6190..6993	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGZS010000057.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323817 SAMN36745520-rid18908463.denovo.59, whole genome shotgun sequence	6190..6993	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNGZS010000057.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323817 SAMN36745520-rid18908463.denovo.59, whole genome shotgun sequence	5450..6190	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNGZS010000057.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323817 SAMN36745520-rid18908463.denovo.59, whole genome shotgun sequence	5450..6190	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABNGZS010000095.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323817 SAMN36745520-rid18908463.guided.54, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNGZS010000098.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323817 SAMN36745520-rid18908463.guided.63, whole genome shotgun sequence	7549..8351	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGZS010000098.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323817 SAMN36745520-rid18908463.guided.63, whole genome shotgun sequence	7548..8351	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGZS010000098.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323817 SAMN36745520-rid18908463.guided.63, whole genome shotgun sequence	7548..8351	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGZS010000098.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323817 SAMN36745520-rid18908463.guided.63, whole genome shotgun sequence	7548..8351	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNGZS010000098.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323817 SAMN36745520-rid18908463.guided.63, whole genome shotgun sequence	8351..9091	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNGZS010000098.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323817 SAMN36745520-rid18908463.guided.63, whole genome shotgun sequence	8351..9091	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNGZS010000068.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323817 SAMN36745520-rid18908463.denovo.73, whole genome shotgun sequence	1873..2554	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABNGZS010000037.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323817 SAMN36745520-rid18908463.denovo.37, whole genome shotgun sequence	5132..5628																																																avrA	ABNGZS010000003.1	174562..175431	98.966	870	0						
GCA_032323435.1_PDT001831566.1_genomic.fna	Salmonella_enterica	0.5219	123.574 KB	9	aroC_13,dnaN_11,hemD_25,hisD_197,purE_12,sucA_71,thrA_4	548	21:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_197	purE	100	100	purE_12	sucA	100	100	sucA_71	thrA	100	100	thrA_4	21	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Minnesota		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGZT010000014.1 Salmonella enterica subsp. enterica serovar Minnesota strain FSIS12323816 SAMN36745519-rid18908453.denovo.14, whole genome shotgun sequence	52475..52912	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGZT010000065.1 Salmonella enterica subsp. enterica serovar Minnesota strain FSIS12323816 SAMN36745519-rid18908453.guided.41, whole genome shotgun sequence	16428..16865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGZT010000002.1	151439..152308	99.31	870	0						
GCA_032323455.1_PDT001831565.1_genomic.fna	Salmonella_enterica	0.521	61.239 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNGZU010000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323813 SAMN36745198-rid18908443.denovo.010, whole genome shotgun sequence	12504..12941	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNGZU010000132.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323813 SAMN36745198-rid18908443.guided.071, whole genome shotgun sequence	12427..12864	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNGZU010000014.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323813 SAMN36745198-rid18908443.denovo.014, whole genome shotgun sequence	38643..39458	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNGZU010000131.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323813 SAMN36745198-rid18908443.guided.052, whole genome shotgun sequence	31002..31817	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNGZU010000014.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323813 SAMN36745198-rid18908443.denovo.014, whole genome shotgun sequence	41635..42834	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNGZU010000131.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323813 SAMN36745198-rid18908443.guided.052, whole genome shotgun sequence	33994..35193	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncC	100	417 / 417	ABNGZU010000014.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323813 SAMN36745198-rid18908443.denovo.014, whole genome shotgun sequence	84424..84840																																																						avrA	ABNGZU010000002.1	106346..107215	99.885	870	0						
GCA_032323475.1_PDT001831563.1_genomic.fna	Salmonella_enterica	0.5203	148.43 KB	11	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	13	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-VIa,aadA1,aph(3')-Ia,aac(6')-Iaa,aac(3)-VIa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aadA1,blaCMY-2,blaTEM-1B,blaCMY-2,blaTEM-1B,floR,floR,qnrB77,qnrB77,qnrB77,qnrB77,qnrB77,sul2,sul2,tet(A),tet(A),dfrA15,dfrA15	1	parC_p.T57S	3	IncC,IncI1-I(Alpha),IncQ1	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGZV010000001.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.denovo.01, whole genome shotgun sequence	160714..161151	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGZV010000037.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.denovo.39, whole genome shotgun sequence	2501..3337	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGZV010000037.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.denovo.39, whole genome shotgun sequence	3337..4140	Streptomycin	AF321551	aac(3)-VIa	100	903/903	ABNGZV010000054.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.denovo.58, whole genome shotgun sequence	5381..6283	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNGZV010000064.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.denovo.72, whole genome shotgun sequence	6..797	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNGZV010000071.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.denovo.86, whole genome shotgun sequence	137..952	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	V00359	aac(6')-Iaa	97.95	438/438	ABNGZV010000088.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.guided.47, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNGZV010000089.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.guided.61, whole genome shotgun sequence	146..1048	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aph(6)-Id	100	837/837	ABNGZV010000090.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.guided.65, whole genome shotgun sequence	1963..2799	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNGZV010000090.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.guided.65, whole genome shotgun sequence	1160..1963	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNGZV010000097.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.guided.83, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	V00359	aadA1	100	792/792	ABNGZV010000100.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.guided.90, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	JQ414041	blaCMY-2	100	1146/1146	ABNGZV010000026.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.denovo.26, whole genome shotgun sequence	72441..73586	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-1B	100	861/861	ABNGZV010000060.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.denovo.67, whole genome shotgun sequence	2500..3360	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNGZV010000087.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.guided.42, whole genome shotgun sequence	1538..2683	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-1B	100	861/861	ABNGZV010000093.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.guided.74, whole genome shotgun sequence	824..1684	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.35	1214/1215	ABNGZV010000055.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.denovo.59, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.35	1214/1215	ABNGZV010000091.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.guided.66, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB77	100	645/645	ABNGZV010000054.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.denovo.58, whole genome shotgun sequence	197..841	Ciprofloxacin	KM985470	qnrB77	99.22	645/645	ABNGZV010000094.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.guided.77, whole genome shotgun sequence	238..882	Ciprofloxacin	KM985470	qnrB77	100	645/645	ABNGZV010000095.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.guided.78, whole genome shotgun sequence	238..882	Ciprofloxacin	KM985470	qnrB77	98.14	645/645	ABNGZV010000098.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.guided.84, whole genome shotgun sequence	10..654	Ciprofloxacin	KM985470	qnrB77	98.91	645/645	ABNGZV010000099.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.guided.85, whole genome shotgun sequence	10..654	Ciprofloxacin	KM985470	sul2	100	816/816	ABNGZV010000037.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.denovo.39, whole genome shotgun sequence	4201..5016	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNGZV010000090.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.guided.65, whole genome shotgun sequence	284..1099	Sulfamethoxazole	AY034138	tet(A)	100	1240/1275	ABNGZV010000037.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.denovo.39, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1271/1275	ABNGZV010000096.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.guided.79, whole genome shotgun sequence	1..1271	Doxycycline, Tetracycline	AF534183	dfrA15	100	474/474	ABNGZV010000046.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.denovo.50, whole genome shotgun sequence	89..562	Trimethoprim	AF221900	dfrA15	100	474/474	ABNGZV010000092.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.guided.68, whole genome shotgun sequence	2694..3167	Trimethoprim	AF221900																																																																																																																																																																																																																																																													parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncC	100	417 / 417	ABNGZV010000032.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.denovo.32, whole genome shotgun sequence	17493..17909	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNGZV010000027.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.denovo.27, whole genome shotgun sequence	69203..69344		enterobacteriales	IncQ1	100	796 / 796	ABNGZV010000053.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323815 SAMN36745200-rid18908423.denovo.57, whole genome shotgun sequence	292..1087																																									avrA	ABNGZV010000005.1	145230..146099	98.966	870	0						
GCA_032323495.1_PDT001831561.1_genomic.fna	Salmonella_enterica	0.5182	67.398 KB	23	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGZX010000010.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323809 SAMN36745004-rid18908403.denovo.010, whole genome shotgun sequence	81216..81653	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGZX010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323809 SAMN36745004-rid18908403.denovo.055, whole genome shotgun sequence	4338..5174	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNGZX010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323809 SAMN36745004-rid18908403.denovo.055, whole genome shotgun sequence	3536..4338	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGZX010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323809 SAMN36745004-rid18908403.denovo.055, whole genome shotgun sequence	3535..4338	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGZX010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323809 SAMN36745004-rid18908403.denovo.055, whole genome shotgun sequence	3535..4338	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGZX010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323809 SAMN36745004-rid18908403.denovo.055, whole genome shotgun sequence	3535..4338	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNGZX010000169.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323809 SAMN36745004-rid18908403.guided.064, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNGZX010000170.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323809 SAMN36745004-rid18908403.guided.068, whole genome shotgun sequence	4379..5215	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNGZX010000170.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323809 SAMN36745004-rid18908403.guided.068, whole genome shotgun sequence	3577..4379	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNGZX010000170.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323809 SAMN36745004-rid18908403.guided.068, whole genome shotgun sequence	3576..4379	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNGZX010000170.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323809 SAMN36745004-rid18908403.guided.068, whole genome shotgun sequence	3576..4379	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNGZX010000170.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323809 SAMN36745004-rid18908403.guided.068, whole genome shotgun sequence	3576..4379	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	290 / 327	ABNGZX010000095.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323809 SAMN36745004-rid18908403.denovo.099, whole genome shotgun sequence	1..290	enterobacteriales	IncHI2A	99.52	630 / 630	ABNGZX010000078.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323809 SAMN36745004-rid18908403.denovo.082, whole genome shotgun sequence	727..1356		enterobacteriales	IncX1	100	373 / 373	ABNGZX010000125.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323809 SAMN36745004-rid18908403.denovo.129, whole genome shotgun sequence	2153..2525																																									avrA	ABNGZX010000039.1	39484..40353	99.655	870	0						
GCA_032323515.1_PDT001831562.1_genomic.fna	Salmonella_enterica	0.5215	213.994 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNGZW010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323814 SAMN36745199-rid18908413.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNGZW010000078.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323814 SAMN36745199-rid18908413.guided.38, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNGZW010000008.1	122894..123762	100	869	0						
GCA_032323535.1_PDT001831560.1_genomic.fna	Salmonella_enterica	0.5219	140.923 KB	10	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNGZY010000001.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323811 SAMN36745006-rid18908393.denovo.01, whole genome shotgun sequence	264603..265040	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNGZY010000066.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323811 SAMN36745006-rid18908393.guided.43, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032323545.1_PDT001831559.1_genomic.fna	Salmonella_enterica	0.5212	92.792 KB	14	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNGZZ010000010.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323810 SAMN36745005-rid18908383.denovo.010, whole genome shotgun sequence	52502..52939	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNGZZ010000103.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323810 SAMN36745005-rid18908383.guided.052, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNGZZ010000005.1	150794..151664	99.196	871	0						
GCA_032323555.1_PDT001831558.1_genomic.fna	Salmonella_enterica	0.521	106.074 KB	15	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHAA010000006.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323808 SAMN36744533-rid18908373.denovo.006, whole genome shotgun sequence	105600..106037	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNHAA010000053.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323808 SAMN36744533-rid18908373.denovo.056, whole genome shotgun sequence	6054..6856	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNHAA010000053.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323808 SAMN36744533-rid18908373.denovo.056, whole genome shotgun sequence	6054..6857	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNHAA010000053.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323808 SAMN36744533-rid18908373.denovo.056, whole genome shotgun sequence	6054..6857	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNHAA010000053.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323808 SAMN36744533-rid18908373.denovo.056, whole genome shotgun sequence	6054..6857	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNHAA010000053.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323808 SAMN36744533-rid18908373.denovo.056, whole genome shotgun sequence	5314..6054	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNHAA010000053.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323808 SAMN36744533-rid18908373.denovo.056, whole genome shotgun sequence	5314..6054	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABNHAA010000113.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323808 SAMN36744533-rid18908373.guided.042, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNHAA010000115.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323808 SAMN36744533-rid18908373.guided.070, whole genome shotgun sequence	2617..3419	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNHAA010000115.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323808 SAMN36744533-rid18908373.guided.070, whole genome shotgun sequence	2616..3419	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNHAA010000115.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323808 SAMN36744533-rid18908373.guided.070, whole genome shotgun sequence	2616..3419	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNHAA010000115.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323808 SAMN36744533-rid18908373.guided.070, whole genome shotgun sequence	2616..3419	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNHAA010000115.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323808 SAMN36744533-rid18908373.guided.070, whole genome shotgun sequence	3419..4159	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNHAA010000115.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323808 SAMN36744533-rid18908373.guided.070, whole genome shotgun sequence	3419..4159	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNHAA010000069.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323808 SAMN36744533-rid18908373.denovo.073, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABNHAA010000057.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323808 SAMN36744533-rid18908373.denovo.060, whole genome shotgun sequence	4946..5442																																																avrA	ABNHAA010000022.1	80087..80956	98.966	870	0						
GCA_032323595.1_PDT001831556.1_genomic.fna	Salmonella_enterica	0.5213	96.135 KB	16	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNHAC010000030.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323806 SAMN36744531-rid18908353.denovo.30, whole genome shotgun sequence	12476..12913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNHAC010000093.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323806 SAMN36744531-rid18908353.guided.50, whole genome shotgun sequence	12446..12883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNHAC010000068.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323806 SAMN36744531-rid18908353.denovo.70, whole genome shotgun sequence	3981..4111																																																						avrA	ABNHAC010000007.1	114622..115491	99.425	870	0						
GCA_032323605.1_PDT001831553.1_genomic.fna	Salmonella_enterica	0.5213	406.648 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHAF010000001.1 Salmonella enterica strain PNUSAS367282 SAMN36744260-rid18908323.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHAF010000025.1 Salmonella enterica strain PNUSAS367282 SAMN36744260-rid18908323.guided.19, whole genome shotgun sequence	5170..5607	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHAF010000014.1 Salmonella enterica strain PNUSAS367282 SAMN36744260-rid18908323.denovo.14, whole genome shotgun sequence	50242..50884	enterobacteriales	IncFII(S)	100	262 / 262	ABNHAF010000014.1 Salmonella enterica strain PNUSAS367282 SAMN36744260-rid18908323.denovo.14, whole genome shotgun sequence	5998..6259																																																avrA	ABNHAF010000007.1	175109..175978	99.54	870	0						
GCA_032323625.1_PDT001831555.1_genomic.fna	Salmonella_enterica	0.5213	118.509 KB	15	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHAD010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323805 SAMN36744530-rid18908343.denovo.001, whole genome shotgun sequence	232675..233112	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNHAD010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323805 SAMN36744530-rid18908343.denovo.054, whole genome shotgun sequence	22813..23604	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHAD010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323805 SAMN36744530-rid18908343.denovo.054, whole genome shotgun sequence	22813..23604	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNHAD010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323805 SAMN36744530-rid18908343.guided.051, whole genome shotgun sequence	9614..10051	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNHAD010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323805 SAMN36744530-rid18908343.guided.053, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHAD010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323805 SAMN36744530-rid18908343.guided.053, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNHAD010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323805 SAMN36744530-rid18908343.denovo.054, whole genome shotgun sequence	21469..22308	Sulfamethoxazole	U12338	sul1	100	840/840	ABNHAD010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323805 SAMN36744530-rid18908343.guided.053, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNHAD010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323805 SAMN36744530-rid18908343.denovo.054, whole genome shotgun sequence	7753..8952	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNHAD010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323805 SAMN36744530-rid18908343.guided.053, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNHAD010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323805 SAMN36744530-rid18908343.denovo.067, whole genome shotgun sequence	14638..15197	enterobacteriales	IncX1	98.93	374 / 374	ABNHAD010000106.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323805 SAMN36744530-rid18908343.denovo.110, whole genome shotgun sequence	1180..1553																																																avrA	ABNHAD010000004.1	124003..124872	99.655	870	0						
GCA_032323655.1_PDT001831557.1_genomic.fna	Salmonella_enterica	0.5221	135.271 KB	13	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	1,3,19:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	1,3,19	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Hayindogo		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNHAB010000016.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323807 SAMN36744532-rid18908363.denovo.16, whole genome shotgun sequence	57557..57994	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNHAB010000080.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323807 SAMN36744532-rid18908363.guided.36, whole genome shotgun sequence	7423..7860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNHAB010000064.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323807 SAMN36744532-rid18908363.denovo.67, whole genome shotgun sequence	557..687																																																						avrA	ABNHAB010000011.1	130895..131764	99.54	870	0						
GCA_032323675.1_PDT001831554.1_genomic.fna	Salmonella_enterica	0.5195	139.036 KB	13	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHAE010000007.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323719 SAMN36744529-rid18908333.denovo.07, whole genome shotgun sequence	25573..26010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHAE010000084.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323719 SAMN36744529-rid18908333.guided.44, whole genome shotgun sequence	12434..12871	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNHAE010000009.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323719 SAMN36744529-rid18908333.denovo.09, whole genome shotgun sequence	18015..18437	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNHAE010000085.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323719 SAMN36744529-rid18908333.guided.50, whole genome shotgun sequence	16565..16987	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHAE010000006.1	95974..96843	99.195	870	0						
GCA_032323755.1_PDT001831544.1_genomic.fna	Salmonella_enterica	0.5199	283.412 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHAJ010000001.1 Salmonella enterica strain PNUSAS367262 SAMN36744217-rid18908233.denovo.01, whole genome shotgun sequence	736621..737058	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHAJ010000027.1 Salmonella enterica strain PNUSAS367262 SAMN36744217-rid18908233.guided.26, whole genome shotgun sequence	885..1322	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHAJ010000020.1 Salmonella enterica strain PNUSAS367262 SAMN36744217-rid18908233.denovo.20, whole genome shotgun sequence	18070..18712	enterobacteriales	IncFII(S)	100	262 / 262	ABNHAJ010000020.1 Salmonella enterica strain PNUSAS367262 SAMN36744217-rid18908233.denovo.20, whole genome shotgun sequence	3369..3630		enterobacteriales	IncX1	98.67	377 / 377	ABNHAJ010000017.1 Salmonella enterica strain PNUSAS367262 SAMN36744217-rid18908233.denovo.17, whole genome shotgun sequence	6390..6766																																									avrA	ABNHAJ010000002.1	552792..553661	99.54	870	0						
GCA_032323775.1_PDT001831539.1_genomic.fna	Salmonella_enterica	0.5214	410.471 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHAK010000004.1 Salmonella enterica strain PNUSAS367030 SAMN36744139-rid18908183.denovo.04, whole genome shotgun sequence	162094..162531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHAK010000034.1 Salmonella enterica strain PNUSAS367030 SAMN36744139-rid18908183.guided.25, whole genome shotgun sequence	5119..5556	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHAK010000021.1 Salmonella enterica strain PNUSAS367030 SAMN36744139-rid18908183.denovo.21, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNHAK010000021.1 Salmonella enterica strain PNUSAS367030 SAMN36744139-rid18908183.denovo.21, whole genome shotgun sequence	5032..5293																																																avrA	ABNHAK010000001.1	553064..553933	99.54	870	0						
GCA_032323795.1_PDT001831538.1_genomic.fna	Salmonella_enterica	0.5226	228.469 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHAL010000001.1 Salmonella enterica strain PNUSAS367029 SAMN36744138-rid18908173.denovo.01, whole genome shotgun sequence	622355..622792	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNHAL010000040.1 Salmonella enterica strain PNUSAS367029 SAMN36744138-rid18908173.guided.25, whole genome shotgun sequence	28989..29426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHAL010000002.1	149690..150559	99.655	870	0						
GCA_032323815.1_PDT001831536.1_genomic.fna	Salmonella_enterica	0.5209	366.963 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHAM010000001.1 Salmonella enterica strain PNUSAS367028 SAMN36744137-rid18908153.denovo.01, whole genome shotgun sequence	477397..477834	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHAM010000035.1 Salmonella enterica strain PNUSAS367028 SAMN36744137-rid18908153.guided.23, whole genome shotgun sequence	4318..4755	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHAM010000016.1	39473..40343	99.196	871	0						
GCA_032323835.1_PDT001831535.1_genomic.fna	Salmonella_enterica	0.5232	393.805 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNHAN010000005.1 Salmonella enterica strain PNUSAS367027 SAMN36744136-rid18908143.denovo.05, whole genome shotgun sequence	149752..150189	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNHAN010000037.1 Salmonella enterica strain PNUSAS367027 SAMN36744136-rid18908143.guided.27, whole genome shotgun sequence	6753..7190	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHAN010000002.1	510343..511211	99.425	870	0						
GCA_032323935.1_PDT001831526.1_genomic.fna	Salmonella_enterica	0.5214	406.325 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHAS010000001.1 Salmonella enterica strain PNUSAS367231 SAMN36744071-rid18908053.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHAS010000028.1 Salmonella enterica strain PNUSAS367231 SAMN36744071-rid18908053.guided.20, whole genome shotgun sequence	9441..9878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHAS010000019.1 Salmonella enterica strain PNUSAS367231 SAMN36744071-rid18908053.denovo.19, whole genome shotgun sequence	6847..7489	enterobacteriales	IncFII(S)	100	262 / 262	ABNHAS010000020.1 Salmonella enterica strain PNUSAS367231 SAMN36744071-rid18908053.denovo.22, whole genome shotgun sequence	3402..3663																																																avrA	ABNHAS010000002.1	553626..554495	99.54	870	0						
GCA_032323955.1_PDT001831525.1_genomic.fna	Salmonella_enterica	0.5208	421.907 KB	5	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNHAT010000002.1 Salmonella enterica strain PNUSAS367222 SAMN36744064-rid18908043.denovo.02, whole genome shotgun sequence	455749..456186	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.74	384/438	ABNHAT010000033.1 Salmonella enterica strain PNUSAS367222 SAMN36744064-rid18908043.guided.28, whole genome shotgun sequence	1..384	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHAT010000001.1	568767..569636	99.425	870	0						
GCA_032323975.1_PDT001831523.1_genomic.fna	Salmonella_enterica	0.5221	319.983 KB	7	aroC_144,dnaN_37,hemD_751,hisD_12,purE_105,sucA_19,thrA_34	5227	7:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_144	dnaN	100	100	dnaN_37	hemD	100	100	hemD_751	hisD	100	100	hisD_12	purE	100	100	purE_105	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I 7:z4,z23:-	This predicted serotype is not in the Kauffman-White scheme. This antigenic profile has been associated with serotype 'II 6,7:z4,z23:- or IV 6,7:z4,z23:-' in the Kauffman-White scheme. The existence of the same antigenic formula in multiple species or subspecies is well documented in the Kauffman-White Scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNHAV010000004.1 Salmonella enterica strain PNUSAS367224 SAMN36744066-rid18908023.denovo.04, whole genome shotgun sequence	361100..361537	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNHAV010000040.1 Salmonella enterica strain PNUSAS367224 SAMN36744066-rid18908023.guided.35, whole genome shotgun sequence	7714..8151	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032323995.1_PDT001831524.1_genomic.fna	Salmonella_enterica	0.5209	386.943 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNHAU010000001.1 Salmonella enterica strain PNUSAS367225 SAMN36744065-rid18908033.denovo.01, whole genome shotgun sequence	620067..620504	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNHAU010000052.1 Salmonella enterica strain PNUSAS367225 SAMN36744065-rid18908033.guided.30, whole genome shotgun sequence	1031..1468	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNHAU010000021.1 Salmonella enterica strain PNUSAS367225 SAMN36744065-rid18908033.denovo.21, whole genome shotgun sequence	12562..13204	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNHAU010000023.1 Salmonella enterica strain PNUSAS367225 SAMN36744065-rid18908033.denovo.23, whole genome shotgun sequence	20816..21408																																																avrA	ABNHAU010000010.1	140535..141403	99.425	870	0						
GCA_032324015.1_PDT001831519.1_genomic.fna	Salmonella_enterica	0.5224	159.169 KB	11	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHAW010000001.1 Salmonella enterica strain PNUSAS367228 SAMN36744068-rid18907983.denovo.01, whole genome shotgun sequence	50843..51280	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHAW010000052.1 Salmonella enterica strain PNUSAS367228 SAMN36744068-rid18907983.guided.49, whole genome shotgun sequence	1237..1674	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNHAW010000022.1 Salmonella enterica strain PNUSAS367228 SAMN36744068-rid18907983.denovo.22, whole genome shotgun sequence	75824..75965																																																						avrA	ABNHAW010000007.1	69084..69953	98.966	870	0						
GCA_032324035.1_PDT001831518.1_genomic.fna	Salmonella_enterica	0.5213	220.306 KB	8	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHAY010000008.1 Salmonella enterica strain PNUSAS367229 SAMN36744067-rid18907973.denovo.08, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNHAY010000049.1 Salmonella enterica strain PNUSAS367229 SAMN36744067-rid18907973.guided.39, whole genome shotgun sequence	3040..3477	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHAY010000001.1	125491..126359	99.31	870	0						
GCA_032324055.1_PDT001831517.1_genomic.fna	Salmonella_enterica	0.5218	469.64 KB	3	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	4	aac(6')-Iaa,aac(6')-Iaa,sul1,sul1,tet(A),tet(A),dfrA5,dfrA5	1	gyrA_p.S83Y	1	Col(pHAD28)	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNHAX010000001.1 Salmonella enterica strain PNUSAS367233 SAMN36744056-rid18907963.denovo.01, whole genome shotgun sequence	680776..681213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNHAX010000032.1 Salmonella enterica strain PNUSAS367233 SAMN36744056-rid18907963.guided.24, whole genome shotgun sequence	6133..6570	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNHAX010000013.1 Salmonella enterica strain PNUSAS367233 SAMN36744056-rid18907963.denovo.13, whole genome shotgun sequence	50067..50906	Sulfamethoxazole	X15024	sul1	100	840/840	ABNHAX010000031.1 Salmonella enterica strain PNUSAS367233 SAMN36744056-rid18907963.guided.22, whole genome shotgun sequence	3160..3999	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABNHAX010000020.1 Salmonella enterica strain PNUSAS367233 SAMN36744056-rid18907963.denovo.20, whole genome shotgun sequence	2104..3303	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNHAX010000034.1 Salmonella enterica strain PNUSAS367233 SAMN36744056-rid18907963.guided.26, whole genome shotgun sequence	2145..3344	Doxycycline, Tetracycline	AJ517790	dfrA5	100	474/474	ABNHAX010000013.1 Salmonella enterica strain PNUSAS367233 SAMN36744056-rid18907963.denovo.13, whole genome shotgun sequence	49069..49542	Trimethoprim	X12868	dfrA5	100	474/474	ABNHAX010000031.1 Salmonella enterica strain PNUSAS367233 SAMN36744056-rid18907963.guided.22, whole genome shotgun sequence	2162..2635	Trimethoprim	X12868																																																																																																																																																																																																																																																																																																																																																																																																																gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	91.07	112 / 131	ABNHAX010000024.1 Salmonella enterica strain PNUSAS367233 SAMN36744056-rid18907963.denovo.29, whole genome shotgun sequence	2183..2294																																																						avrA	ABNHAX010000009.1	95115..95984	99.31	870	0						
GCA_032324075.1_PDT001831516.1_genomic.fna	Salmonella_enterica	0.5214	400.829 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHAZ010000003.1 Salmonella enterica strain PNUSAS367230 SAMN36744055-rid18907073.denovo.03, whole genome shotgun sequence	200042..200479	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHAZ010000031.1 Salmonella enterica strain PNUSAS367230 SAMN36744055-rid18907073.guided.24, whole genome shotgun sequence	10308..10745	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHAZ010000022.1 Salmonella enterica strain PNUSAS367230 SAMN36744055-rid18907073.denovo.22, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNHAZ010000023.1 Salmonella enterica strain PNUSAS367230 SAMN36744055-rid18907073.denovo.25, whole genome shotgun sequence	3398..3659																																																avrA	ABNHAZ010000001.1	553420..554289	99.54	870	0						
GCA_032324095.1_PDT001831515.1_genomic.fna	Salmonella_enterica	0.5219	257.84 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNHBA010000004.1 Salmonella enterica strain PNUSAS367232 SAMN36744057-rid18907063.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNHBA010000045.1 Salmonella enterica strain PNUSAS367232 SAMN36744057-rid18907063.guided.29, whole genome shotgun sequence	20997..21434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNHBA010000024.1 Salmonella enterica strain PNUSAS367232 SAMN36744057-rid18907063.denovo.24, whole genome shotgun sequence	44721..45363	enterobacteriales	IncFII(S)	100	262 / 262	ABNHBA010000024.1 Salmonella enterica strain PNUSAS367232 SAMN36744057-rid18907063.denovo.24, whole genome shotgun sequence	29375..29636																																																avrA	ABNHBA010000007.1	94139..95007	100	869	0						
GCA_032325535.1_PDT001912375.1_genomic.fna	Salmonella_enterica	0.521	188.939 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHBG010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325466 SAMN37658888-rid19581453.denovo.01, whole genome shotgun sequence	145440..145877	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHBG010000062.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325466 SAMN37658888-rid19581453.guided.30, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNHBG010000044.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325466 SAMN37658888-rid19581453.denovo.47, whole genome shotgun sequence	3229..3380																																																						avrA	ABNHBG010000006.1	123743..124611	99.77	870	0						
GCA_032325555.1_PDT001912372.1_genomic.fna	Salmonella_enterica	0.521	352.752 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHBH010000003.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325463 SAMN37658885-rid19581423.denovo.03, whole genome shotgun sequence	159356..159793	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHBH010000026.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325463 SAMN37658885-rid19581423.denovo.29, whole genome shotgun sequence	6991..7827	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNHBH010000026.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325463 SAMN37658885-rid19581423.denovo.29, whole genome shotgun sequence	6188..6991	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNHBH010000038.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325463 SAMN37658885-rid19581423.guided.26, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHBH010000040.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325463 SAMN37658885-rid19581423.guided.30, whole genome shotgun sequence	3272..4108	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNHBH010000040.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325463 SAMN37658885-rid19581423.guided.30, whole genome shotgun sequence	2469..3272	Streptomycin	AF321551	floR	98.19	1214/1215	ABNHBH010000029.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325463 SAMN37658885-rid19581423.denovo.34, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNHBH010000041.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325463 SAMN37658885-rid19581423.guided.33, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNHBH010000026.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325463 SAMN37658885-rid19581423.denovo.29, whole genome shotgun sequence	5312..6127	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNHBH010000040.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325463 SAMN37658885-rid19581423.guided.30, whole genome shotgun sequence	1593..2408	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNHBH010000026.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325463 SAMN37658885-rid19581423.denovo.29, whole genome shotgun sequence	9088..10362	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNHBH010000040.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325463 SAMN37658885-rid19581423.guided.30, whole genome shotgun sequence	5369..6643	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNHBH010000022.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325463 SAMN37658885-rid19581423.denovo.22, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNHBH010000019.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325463 SAMN37658885-rid19581423.denovo.19, whole genome shotgun sequence	16876..17135		enterobacteriales	IncX1	98.66	374 / 374	ABNHBH010000019.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325463 SAMN37658885-rid19581423.denovo.19, whole genome shotgun sequence	52730..53103																																									avrA	ABNHBH010000006.1	174821..175689	99.54	870	0						
GCA_032325575.1_PDT001912371.1_genomic.fna	Salmonella_enterica	0.521	260.993 KB	8	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHBI010000002.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325462 SAMN37658884-rid19581413.denovo.02, whole genome shotgun sequence	159373..159810	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHBI010000031.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325462 SAMN37658884-rid19581413.denovo.34, whole genome shotgun sequence	270..1106	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNHBI010000031.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325462 SAMN37658884-rid19581413.denovo.34, whole genome shotgun sequence	1106..1909	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNHBI010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325462 SAMN37658884-rid19581413.guided.32, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHBI010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325462 SAMN37658884-rid19581413.guided.37, whole genome shotgun sequence	3781..4617	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNHBI010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325462 SAMN37658884-rid19581413.guided.37, whole genome shotgun sequence	2978..3781	Streptomycin	AF321551	floR	98.19	1214/1215	ABNHBI010000035.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325462 SAMN37658884-rid19581413.denovo.40, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNHBI010000050.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325462 SAMN37658884-rid19581413.guided.39, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNHBI010000031.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325462 SAMN37658884-rid19581413.denovo.34, whole genome shotgun sequence	1970..2785	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNHBI010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325462 SAMN37658884-rid19581413.guided.37, whole genome shotgun sequence	2102..2917	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNHBI010000037.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325462 SAMN37658884-rid19581413.denovo.42, whole genome shotgun sequence	840..2114	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNHBI010000051.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325462 SAMN37658884-rid19581413.guided.43, whole genome shotgun sequence	959..2233	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNHBI010000027.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325462 SAMN37658884-rid19581413.denovo.27, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNHBI010000023.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325462 SAMN37658884-rid19581413.denovo.23, whole genome shotgun sequence	16913..17172		enterobacteriales	IncX1	98.66	374 / 374	ABNHBI010000030.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325462 SAMN37658884-rid19581413.denovo.31, whole genome shotgun sequence	139..512																																									avrA	ABNHBI010000006.1	173801..174669	99.54	870	0						
GCA_032325595.1_PDT001912367.1_genomic.fna	Salmonella_enterica	0.5209	363.883 KB	6	aroC_117,dnaN_319,hemD_43,hisD_38,purE_8,sucA_9,thrA_777	4093	4:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_117	dnaN	100	100	dnaN_319	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_777	4	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Hato		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNHBL010000007.1 Salmonella enterica strain PNUSAS388311 SAMN37658826-rid19581373.denovo.07, whole genome shotgun sequence	160150..160587	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNHBL010000047.1 Salmonella enterica strain PNUSAS388311 SAMN37658826-rid19581373.guided.25, whole genome shotgun sequence	12429..12866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHBL010000010.1	106595..107464	99.425	870	0						
GCA_032325615.1_PDT001912369.1_genomic.fna	Salmonella_enterica	0.521	219.252 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNHBJ010000001.1 Salmonella enterica strain PNUSAS388328 SAMN37658829-rid19581393.denovo.01, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNHBJ010000076.1 Salmonella enterica strain PNUSAS388328 SAMN37658829-rid19581393.guided.35, whole genome shotgun sequence	12405..12842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNHBJ010000003.1	95312..96180	100	869	0						
GCA_032325635.1_PDT001912366.1_genomic.fna	Salmonella_enterica	0.5225	94.775 KB	17	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	-	- -:r:1,5	The input genome cannot be identified as Salmonella. Check the input for taxonomic ID, contamination, or sequencing quality.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHBK010000021.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325429 SAMN37658823-rid19581363.denovo.021, whole genome shotgun sequence	62369..62806	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNHBK010000073.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325429 SAMN37658823-rid19581363.denovo.075, whole genome shotgun sequence	11933..12724	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHBK010000073.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325429 SAMN37658823-rid19581363.denovo.075, whole genome shotgun sequence	11933..12724	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNHBK010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325429 SAMN37658823-rid19581363.guided.056, whole genome shotgun sequence	12401..12838	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNHBK010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325429 SAMN37658823-rid19581363.guided.094, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHBK010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325429 SAMN37658823-rid19581363.guided.094, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNHBK010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325429 SAMN37658823-rid19581363.denovo.088, whole genome shotgun sequence	5569..6444	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNHBK010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325429 SAMN37658823-rid19581363.guided.108, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNHBK010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325429 SAMN37658823-rid19581363.denovo.102, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABNHBK010000122.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325429 SAMN37658823-rid19581363.guided.101, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABNHBK010000073.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325429 SAMN37658823-rid19581363.denovo.075, whole genome shotgun sequence	10589..11428	Sulfamethoxazole	U12338	sul1	100	840/840	ABNHBK010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325429 SAMN37658823-rid19581363.guided.094, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNHBK010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325429 SAMN37658823-rid19581363.denovo.082, whole genome shotgun sequence	1838..3037	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNHBK010000119.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325429 SAMN37658823-rid19581363.guided.081, whole genome shotgun sequence	1828..3027	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNHBK010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325429 SAMN37658823-rid19581363.denovo.069, whole genome shotgun sequence	13151..13710																																																						avrA	ABNHBK010000015.1	94085..94954	99.655	870	0						
GCA_032325655.1_PDT001912364.1_genomic.fna	Salmonella_enterica	0.5219	111.897 KB	15	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNHBM010000002.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325430 SAMN37658825-rid19581343.denovo.02, whole genome shotgun sequence	81975..82412	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNHBM010000098.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325430 SAMN37658825-rid19581343.guided.44, whole genome shotgun sequence	7450..7887	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNHBM010000071.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325430 SAMN37658825-rid19581343.denovo.74, whole genome shotgun sequence	239..369																																																						avrA	ABNHBM010000014.1	39592..40461	99.425	870	0						
GCA_032325675.1_PDT001912365.1_genomic.fna	Salmonella_enterica	0.521	278.474 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNHBN010000002.1 Salmonella enterica strain PNUSAS388327 SAMN37658838-rid19581353.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNHBN010000047.1 Salmonella enterica strain PNUSAS388327 SAMN37658838-rid19581353.guided.31, whole genome shotgun sequence	6086..6523	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNHBN010000004.1	174651..175519	100	869	0						
GCA_032325715.1_PDT001912361.1_genomic.fna	Salmonella_enterica	0.5209	321.607 KB	6	aroC_42,dnaN_11,hemD_48,hisD_149,purE_12,sucA_13,thrA_4	1575	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHBP010000001.1 Salmonella enterica strain PNUSAS388320 SAMN37658835-rid19581313.denovo.01, whole genome shotgun sequence	148196..148633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHBP010000080.1 Salmonella enterica strain PNUSAS388320 SAMN37658835-rid19581313.guided.38, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNHBP010000033.1 Salmonella enterica strain PNUSAS388320 SAMN37658835-rid19581313.denovo.34, whole genome shotgun sequence	5946..6588																																																																	
GCA_032325735.1_PDT001912360.1_genomic.fna	Salmonella_enterica	0.5214	237.96 KB	7	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHBQ010000008.1 Salmonella enterica strain PNUSAS388318 SAMN37658837-rid19581303.denovo.08, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNHBQ010000060.1 Salmonella enterica strain PNUSAS388318 SAMN37658837-rid19581303.guided.33, whole genome shotgun sequence	10373..10810	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHBQ010000001.1	145044..145912	99.31	870	0						
GCA_032325755.1_PDT001912359.1_genomic.fna	Salmonella_enterica	0.5225	343.53 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHBR010000001.1 Salmonella enterica strain PNUSAS388315 SAMN37658832-rid19581293.denovo.01, whole genome shotgun sequence	454798..455235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHBR010000038.1 Salmonella enterica strain PNUSAS388315 SAMN37658832-rid19581293.guided.23, whole genome shotgun sequence	2242..2679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHBR010000001.1	890802..891671	98.966	870	0						
GCA_032325775.1_PDT001912358.1_genomic.fna	Salmonella_enterica	0.5223	682.831 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNHBT010000001.1 Salmonella enterica strain PNUSAS388323 SAMN37658840-rid19581283.denovo.01, whole genome shotgun sequence	486958..487395	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNHBT010000023.1 Salmonella enterica strain PNUSAS388323 SAMN37658840-rid19581283.guided.17, whole genome shotgun sequence	9325..9762	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHBT010000002.1	544643..545511	99.425	870	0						
GCA_032325795.1_PDT001912353.1_genomic.fna	Salmonella_enterica	0.5227	70.236 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHBU010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.denovo.001, whole genome shotgun sequence	175545..175982	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNHBU010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.denovo.120, whole genome shotgun sequence	1053..2078	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNHBU010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.denovo.120, whole genome shotgun sequence	48..824	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNHBU010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.denovo.140, whole genome shotgun sequence	93..908	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	X62115	aac(6')-Iaa	97.49	438/438	ABNHBU010000139.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.guided.066, whole genome shotgun sequence	10869..11306	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNHBU010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.guided.119, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNHBU010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.guided.119, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNHBU010000147.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.guided.138, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	X62115	floR	98.19	1214/1215	ABNHBU010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.denovo.111, whole genome shotgun sequence	2863..4076	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNHBU010000143.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.guided.112, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNHBU010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.denovo.089, whole genome shotgun sequence	10601..11440	Sulfamethoxazole	U12338	sul1	100	840/840	ABNHBU010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.guided.097, whole genome shotgun sequence	1079..1918	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNHBU010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.denovo.096, whole genome shotgun sequence	1874..3073	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNHBU010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.guided.095, whole genome shotgun sequence	1882..3081	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNHBU010000103.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.denovo.107, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNHBU010000144.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.guided.115, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNHBU010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325428 SAMN37658820-rid19581233.denovo.077, whole genome shotgun sequence	2532..3091																																																						avrA	ABNHBU010000006.1	105565..106434	99.655	870	0						
GCA_032325815.1_PDT001912355.1_genomic.fna	Salmonella_enterica	0.5227	73.916 KB	22	aroC_172,dnaN_166,hemD_10,hisD_122,purE_61,sucA_90,thrA_86	555	8:i:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_172	dnaN	100	100	dnaN_166	hemD	100	100	hemD_10	hisD	100	100	hisD_122	purE	100	100	purE_61	sucA	100	100	sucA_90	thrA	100	100	thrA_86	8	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	Takoradi or Bargny	The predicted serotypes share the same general formula: 8:i:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHBS010000018.1 Salmonella enterica subsp. enterica strain FSIS12325431 SAMN37658828-rid19581253.denovo.018, whole genome shotgun sequence	17125..17562	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHBS010000138.1 Salmonella enterica subsp. enterica strain FSIS12325431 SAMN37658828-rid19581253.guided.057, whole genome shotgun sequence	8799..9236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHBS010000006.1	81702..82571	99.08	870	0						
GCA_032325835.1_PDT001912352.1_genomic.fna	Salmonella_enterica	0.5212	383.383 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHBV010000001.1 Salmonella enterica strain PNUSAS388314 SAMN37658798-rid19581223.denovo.01, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHBV010000034.1 Salmonella enterica strain PNUSAS388314 SAMN37658798-rid19581223.guided.19, whole genome shotgun sequence	35853..36290	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHBV010000011.1	150710..151578	99.195	870	0						
GCA_032325855.1_PDT001912351.1_genomic.fna	Salmonella_enterica	0.5213	565.063 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNHBW010000001.1 Salmonella enterica strain PNUSAS388316 SAMN37658795-rid19581213.denovo.01, whole genome shotgun sequence	522156..522593	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNHBW010000024.1 Salmonella enterica strain PNUSAS388316 SAMN37658795-rid19581213.guided.20, whole genome shotgun sequence	17459..17896	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.39	446 / 445	ABNHBW010000014.1 Salmonella enterica strain PNUSAS388316 SAMN37658795-rid19581213.denovo.14, whole genome shotgun sequence	40686..41130	enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABNHBW010000014.1 Salmonella enterica strain PNUSAS388316 SAMN37658795-rid19581213.denovo.14, whole genome shotgun sequence	41391..41603																																																avrA	ABNHBW010000004.1	181803..182671	99.425	870	0						
GCA_032325875.1_PDT001912349.1_genomic.fna	Salmonella_enterica	0.5217	72.797 KB	21	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHBX010000023.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325427 SAMN37658797-rid19581193.denovo.023, whole genome shotgun sequence	52345..52782	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNHBX010000137.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325427 SAMN37658797-rid19581193.guided.057, whole genome shotgun sequence	14088..14525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNHBX010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325427 SAMN37658797-rid19581193.denovo.096, whole genome shotgun sequence	5304..5863																																																						avrA	ABNHBX010000004.1	81701..82570	99.655	870	0						
GCA_032326135.1_PDT001831260.1_genomic.fna	Salmonella_enterica	0.521	279.776 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHCK010000001.1 Salmonella enterica strain PNUSAS367189 SAMN36732401-rid18905883.denovo.01, whole genome shotgun sequence	581223..581660	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHCK010000045.1 Salmonella enterica strain PNUSAS367189 SAMN36732401-rid18905883.guided.37, whole genome shotgun sequence	206..643	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNHCK010000002.1 Salmonella enterica strain PNUSAS367189 SAMN36732401-rid18905883.denovo.02, whole genome shotgun sequence	59756..60961	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNHCK010000043.1 Salmonella enterica strain PNUSAS367189 SAMN36732401-rid18905883.guided.29, whole genome shotgun sequence	11282..12487	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABNHCK010000002.1	154009..154878	99.885	870	0						
GCA_032326155.1_PDT001831259.1_genomic.fna	Salmonella_enterica	0.5231	324.634 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHCL010000001.1 Salmonella enterica strain PNUSAS367182 SAMN36731635-rid18905873.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNHCL010000036.1 Salmonella enterica strain PNUSAS367182 SAMN36731635-rid18905873.guided.25, whole genome shotgun sequence	5934..6371	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNHCL010000027.1 Salmonella enterica strain PNUSAS367182 SAMN36731635-rid18905873.denovo.30, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNHCL010000038.1 Salmonella enterica strain PNUSAS367182 SAMN36731635-rid18905873.guided.31, whole genome shotgun sequence	93..737	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNHCL010000027.1 Salmonella enterica strain PNUSAS367182 SAMN36731635-rid18905873.denovo.30, whole genome shotgun sequence	1150..1280																																																						avrA	ABNHCL010000005.1	149828..150697	99.655	870	0						
GCA_032326175.1_PDT001831257.1_genomic.fna	Salmonella_enterica	0.5207	394.574 KB	4	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncM1	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHCN010000002.1 Salmonella enterica strain PNUSAS367178 SAMN36731640-rid18905853.denovo.02, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHCN010000029.1 Salmonella enterica strain PNUSAS367178 SAMN36731640-rid18905853.guided.22, whole genome shotgun sequence	390..827	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncM1	99.46	739 / 739	ABNHCN010000015.1 Salmonella enterica strain PNUSAS367178 SAMN36731640-rid18905853.denovo.15, whole genome shotgun sequence	32750..33488																																																																	
GCA_032326195.1_PDT001831258.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHCM010000001.1 Salmonella enterica strain PNUSAS367184 SAMN36731630-rid18905863.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHCM010000031.1 Salmonella enterica strain PNUSAS367184 SAMN36731630-rid18905863.guided.25, whole genome shotgun sequence	2935..3372	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHCM010000019.1 Salmonella enterica strain PNUSAS367184 SAMN36731630-rid18905863.denovo.19, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNHCM010000020.1 Salmonella enterica strain PNUSAS367184 SAMN36731630-rid18905863.denovo.20, whole genome shotgun sequence	3420..3681																																																avrA	ABNHCM010000002.1	553636..554505	99.54	870	0						
GCA_032326215.1_PDT001831256.1_genomic.fna	Salmonella_enterica	0.5225	214.115 KB	7	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHCO010000001.1 Salmonella enterica strain PNUSAS367195 SAMN36731628-rid18905843.denovo.01, whole genome shotgun sequence	153894..154331	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHCO010000040.1 Salmonella enterica strain PNUSAS367195 SAMN36731628-rid18905843.guided.39, whole genome shotgun sequence	24..461	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032326235.1_PDT001831255.1_genomic.fna	Salmonella_enterica	0.5212	364.475 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHCP010000001.1 Salmonella enterica strain PNUSAS367194 SAMN36731639-rid18905833.denovo.01, whole genome shotgun sequence	560694..561131	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHCP010000032.1 Salmonella enterica strain PNUSAS367194 SAMN36731639-rid18905833.guided.22, whole genome shotgun sequence	8297..8734	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	98.59	142 / 142	ABNHCP010000016.1 Salmonella enterica strain PNUSAS367194 SAMN36731639-rid18905833.denovo.16, whole genome shotgun sequence	66613..66754																																																						avrA	ABNHCP010000009.1	140191..141059	99.195	870	0						
GCA_032326255.1_PDT001831252.1_genomic.fna	Salmonella_enterica	0.5216	210.731 KB	7	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHCS010000002.1 Salmonella enterica strain PNUSAS367174 SAMN36731637-rid18905803.denovo.02, whole genome shotgun sequence	380331..380768	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHCS010000049.1 Salmonella enterica strain PNUSAS367174 SAMN36731637-rid18905803.guided.39, whole genome shotgun sequence	1933..2370	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032326275.1_PDT001831253.1_genomic.fna	Salmonella_enterica	0.5218	193.644 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNHCR010000003.1 Salmonella enterica strain PNUSAS367192 SAMN36731634-rid18905813.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNHCR010000062.1 Salmonella enterica strain PNUSAS367192 SAMN36731634-rid18905813.guided.48, whole genome shotgun sequence	445..882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNHCR010000027.1 Salmonella enterica strain PNUSAS367192 SAMN36731634-rid18905813.denovo.27, whole genome shotgun sequence	44727..45369	enterobacteriales	IncFII(S)	100	262 / 262	ABNHCR010000027.1 Salmonella enterica strain PNUSAS367192 SAMN36731634-rid18905813.denovo.27, whole genome shotgun sequence	29382..29643																																																avrA	ABNHCR010000004.1	174651..175519	100	869	0						
GCA_032326295.1_PDT001831251.1_genomic.fna	Salmonella_enterica	0.5214	368.332 KB	4	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHCT010000001.1 Salmonella enterica strain PNUSAS367175 SAMN36731632-rid18905793.denovo.01, whole genome shotgun sequence	492425..492862	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHCT010000028.1 Salmonella enterica strain PNUSAS367175 SAMN36731632-rid18905793.guided.21, whole genome shotgun sequence	4211..4648	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032326315.1_PDT001831250.1_genomic.fna	Salmonella_enterica	0.5222	421.283 KB	4	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNHCV010000001.1 Salmonella enterica strain PNUSAS367186 SAMN36731641-rid18905783.denovo.01, whole genome shotgun sequence	481936..482373	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNHCV010000021.1 Salmonella enterica strain PNUSAS367186 SAMN36731641-rid18905783.guided.18, whole genome shotgun sequence	1232..1669	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNHCV010000004.1	151330..152199	99.77	870	0						
GCA_032326335.1_PDT001831254.1_genomic.fna	Salmonella_enterica	0.5212	489.039 KB	3	aroC_5,dnaN_2,hemD_360,hisD_7,purE_6,sucA_6,thrA_11	1973	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_360	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHCQ010000001.1 Salmonella enterica strain PNUSAS367183 SAMN36731644-rid18905823.denovo.01, whole genome shotgun sequence	774540..774977	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHCQ010000026.1 Salmonella enterica strain PNUSAS367183 SAMN36731644-rid18905823.guided.20, whole genome shotgun sequence	979..1416	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHCQ010000017.1 Salmonella enterica strain PNUSAS367183 SAMN36731644-rid18905823.denovo.18, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNHCQ010000018.1 Salmonella enterica strain PNUSAS367183 SAMN36731644-rid18905823.denovo.21, whole genome shotgun sequence	3372..3633																																																avrA	ABNHCQ010000002.1	553547..554416	99.54	870	0						
GCA_032326355.1_PDT001831249.1_genomic.fna	Salmonella_enterica	0.5215	194.508 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHCU010000001.1 Salmonella enterica strain PNUSAS367196 SAMN36731638-rid18905773.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNHCU010000028.1 Salmonella enterica strain PNUSAS367196 SAMN36731638-rid18905773.denovo.28, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHCU010000028.1 Salmonella enterica strain PNUSAS367196 SAMN36731638-rid18905773.denovo.28, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNHCU010000055.1 Salmonella enterica strain PNUSAS367196 SAMN36731638-rid18905773.guided.34, whole genome shotgun sequence	9282..9719	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNHCU010000057.1 Salmonella enterica strain PNUSAS367196 SAMN36731638-rid18905773.guided.38, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHCU010000057.1 Salmonella enterica strain PNUSAS367196 SAMN36731638-rid18905773.guided.38, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNHCU010000028.1 Salmonella enterica strain PNUSAS367196 SAMN36731638-rid18905773.denovo.28, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNHCU010000057.1 Salmonella enterica strain PNUSAS367196 SAMN36731638-rid18905773.guided.38, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNHCU010000028.1 Salmonella enterica strain PNUSAS367196 SAMN36731638-rid18905773.denovo.28, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNHCU010000059.1 Salmonella enterica strain PNUSAS367196 SAMN36731638-rid18905773.guided.47, whole genome shotgun sequence	1508..2707	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNHCU010000032.1 Salmonella enterica strain PNUSAS367196 SAMN36731638-rid18905773.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABNHCU010000002.1	95066..95935	99.655	870	0						
GCA_032326375.1_PDT001831247.1_genomic.fna	Salmonella_enterica	0.5213	471.315 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHCW010000001.1 Salmonella enterica strain PNUSAS367187 SAMN36731643-rid18905753.denovo.01, whole genome shotgun sequence	815085..815522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHCW010000025.1 Salmonella enterica strain PNUSAS367187 SAMN36731643-rid18905753.guided.18, whole genome shotgun sequence	2434..2871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHCW010000016.1 Salmonella enterica strain PNUSAS367187 SAMN36731643-rid18905753.denovo.16, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNHCW010000018.1 Salmonella enterica strain PNUSAS367187 SAMN36731643-rid18905753.denovo.19, whole genome shotgun sequence	3397..3658																																																avrA	ABNHCW010000002.1	553187..554056	99.54	870	0						
GCA_032326395.1_PDT001831246.1_genomic.fna	Salmonella_enterica	0.5214	400.829 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHCX010000001.1 Salmonella enterica strain PNUSAS367193 SAMN36731629-rid18905743.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHCX010000030.1 Salmonella enterica strain PNUSAS367193 SAMN36731629-rid18905743.guided.24, whole genome shotgun sequence	4485..4922	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHCX010000022.1 Salmonella enterica strain PNUSAS367193 SAMN36731629-rid18905743.denovo.22, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNHCX010000024.1 Salmonella enterica strain PNUSAS367193 SAMN36731629-rid18905743.denovo.26, whole genome shotgun sequence	3402..3663																																																avrA	ABNHCX010000002.1	553636..554505	99.54	870	0						
GCA_032326415.1_PDT001831245.1_genomic.fna	Salmonella_enterica	0.5209	398.304 KB	3	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col440I,Col440I,IncFII(p96A)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNHCY010000001.1 Salmonella enterica strain PNUSAS367176 SAMN36731633-rid18905733.denovo.01, whole genome shotgun sequence	987960..988397	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNHCY010000028.1 Salmonella enterica strain PNUSAS367176 SAMN36731633-rid18905733.guided.19, whole genome shotgun sequence	5774..6211	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNHCY010000020.1 Salmonella enterica strain PNUSAS367176 SAMN36731633-rid18905733.denovo.21, whole genome shotgun sequence	2208..2338	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNHCY010000021.1 Salmonella enterica strain PNUSAS367176 SAMN36731633-rid18905733.denovo.22, whole genome shotgun sequence	557..687		enterobacteriales	Col440I	94.59	111 / 114	ABNHCY010000019.1 Salmonella enterica strain PNUSAS367176 SAMN36731633-rid18905733.denovo.20, whole genome shotgun sequence	3175..3285		enterobacteriales	Col440I	93.64	110 / 114	ABNHCY010000023.1 Salmonella enterica strain PNUSAS367176 SAMN36731633-rid18905733.denovo.26, whole genome shotgun sequence	1568..1677		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNHCY010000017.1 Salmonella enterica strain PNUSAS367176 SAMN36731633-rid18905733.denovo.17, whole genome shotgun sequence	15755..16288																											avrA	ABNHCY010000001.1	545591..546459	99.655	869	0						
GCA_032326455.1_PDT001831240.1_genomic.fna	Salmonella_enterica	0.5217	208.807 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHDC010000001.1 Salmonella enterica strain PNUSAS367181 SAMN36731636-rid18905683.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNHDC010000025.1 Salmonella enterica strain PNUSAS367181 SAMN36731636-rid18905683.denovo.25, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHDC010000025.1 Salmonella enterica strain PNUSAS367181 SAMN36731636-rid18905683.denovo.25, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNHDC010000038.1 Salmonella enterica strain PNUSAS367181 SAMN36731636-rid18905683.denovo.41, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNHDC010000038.1 Salmonella enterica strain PNUSAS367181 SAMN36731636-rid18905683.denovo.41, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNHDC010000052.1 Salmonella enterica strain PNUSAS367181 SAMN36731636-rid18905683.guided.45, whole genome shotgun sequence	3502..3939	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNHDC010000053.1 Salmonella enterica strain PNUSAS367181 SAMN36731636-rid18905683.guided.46, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHDC010000053.1 Salmonella enterica strain PNUSAS367181 SAMN36731636-rid18905683.guided.46, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNHDC010000054.1 Salmonella enterica strain PNUSAS367181 SAMN36731636-rid18905683.guided.47, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNHDC010000054.1 Salmonella enterica strain PNUSAS367181 SAMN36731636-rid18905683.guided.47, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNHDC010000025.1 Salmonella enterica strain PNUSAS367181 SAMN36731636-rid18905683.denovo.25, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNHDC010000053.1 Salmonella enterica strain PNUSAS367181 SAMN36731636-rid18905683.guided.46, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNHDC010000025.1 Salmonella enterica strain PNUSAS367181 SAMN36731636-rid18905683.denovo.25, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNHDC010000049.1 Salmonella enterica strain PNUSAS367181 SAMN36731636-rid18905683.guided.34, whole genome shotgun sequence	11870..13069	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNHDC010000032.1 Salmonella enterica strain PNUSAS367181 SAMN36731636-rid18905683.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABNHDC010000003.1	150300..151169	99.655	870	0						
GCA_032326475.1_PDT001831241.1_genomic.fna	Salmonella_enterica	0.5214	477.519 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHDB010000002.1 Salmonella enterica strain PNUSAS367180 SAMN36731625-rid18905693.denovo.02, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHDB010000022.1 Salmonella enterica strain PNUSAS367180 SAMN36731625-rid18905693.guided.19, whole genome shotgun sequence	4162..4599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABNHDB010000023.1 Salmonella enterica strain PNUSAS367180 SAMN36731625-rid18905693.guided.20, whole genome shotgun sequence	4162..4599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABNHDB010000001.1	553635..554504	99.54	870	0						
GCA_032326495.1_PDT001831239.1_genomic.fna	Salmonella_enterica	0.5214	364.001 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHDD010000001.1 Salmonella enterica strain PNUSAS367191 SAMN36731627-rid18905673.denovo.01, whole genome shotgun sequence	560694..561131	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHDD010000028.1 Salmonella enterica strain PNUSAS367191 SAMN36731627-rid18905673.guided.19, whole genome shotgun sequence	526..963	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHDD010000011.1	140181..141049	99.195	870	0						
GCA_032326515.1_PDT001831243.1_genomic.fna	Salmonella_enterica	0.5214	400.829 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHDA010000001.1 Salmonella enterica strain PNUSAS367185 SAMN36731624-rid18905713.denovo.01, whole genome shotgun sequence	780560..780997	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHDA010000027.1 Salmonella enterica strain PNUSAS367185 SAMN36731624-rid18905713.guided.21, whole genome shotgun sequence	5991..6428	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHDA010000019.1 Salmonella enterica strain PNUSAS367185 SAMN36731624-rid18905713.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNHDA010000020.1 Salmonella enterica strain PNUSAS367185 SAMN36731624-rid18905713.denovo.22, whole genome shotgun sequence	3392..3653																																																avrA	ABNHDA010000002.1	553636..554505	99.54	870	0						
GCA_032326535.1_PDT001831238.1_genomic.fna	Salmonella_enterica	0.521	320.083 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHDF010000002.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.denovo.02, whole genome shotgun sequence	159453..159890	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHDF010000028.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.denovo.28, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNHDF010000028.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.denovo.28, whole genome shotgun sequence	30930..31732	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNHDF010000039.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.denovo.48, whole genome shotgun sequence	137..952	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	V00359	aph(6)-Id	100	837/837	ABNHDF010000048.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.guided.36, whole genome shotgun sequence	1894..2730	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNHDF010000048.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.guided.36, whole genome shotgun sequence	1092..1894	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNHDF010000053.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.guided.43, whole genome shotgun sequence	413..850	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNHDF010000055.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.guided.47, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	V00359	blaCMY-2	100	1146/1146	ABNHDF010000028.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.denovo.28, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	823/861	ABNHDF010000035.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.denovo.37, whole genome shotgun sequence	3300..4122	Unknown Beta-lactam	KP050491	blaTEM-206	100	823/861	ABNHDF010000035.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.denovo.37, whole genome shotgun sequence	3300..4122	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	823/861	ABNHDF010000035.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.denovo.37, whole genome shotgun sequence	3300..4122	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNHDF010000049.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.guided.39, whole genome shotgun sequence	1716..2861	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	99.91	1146/1146	ABNHDF010000050.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.guided.40, whole genome shotgun sequence	1716..2861	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNHDF010000054.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.guided.44, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNHDF010000054.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.guided.44, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNHDF010000054.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.guided.44, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNHDF010000033.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.denovo.34, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNHDF010000052.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.guided.42, whole genome shotgun sequence	575..1788	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNHDF010000028.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.denovo.28, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNHDF010000048.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.guided.36, whole genome shotgun sequence	216..1031	Sulfamethoxazole	AY034138	tet(A)	100	1240/1275	ABNHDF010000028.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.denovo.28, whole genome shotgun sequence	33829..35068	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNHDF010000048.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.guided.36, whole genome shotgun sequence	3991..5265	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																											enterobacteriales	IncC	100	417 / 417	ABNHDF010000025.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.denovo.25, whole genome shotgun sequence	17489..17905	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNHDF010000021.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.denovo.21, whole genome shotgun sequence	16913..17172		enterobacteriales	IncX1	98.66	374 / 374	ABNHDF010000021.1 Salmonella enterica strain PNUSAS367190 SAMN36731623-rid18905663.denovo.21, whole genome shotgun sequence	52767..53140																																									avrA	ABNHDF010000008.1	131337..132205	99.54	870	0						
GCA_032327335.1_PDT001831109.1_genomic.fna	Salmonella_enterica	0.522	151.09 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_110,sucA_9,thrA_2	302	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_110	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHES010000001.1 Salmonella enterica strain PNUSAS367137 SAMN36730267-rid18904383.denovo.01, whole genome shotgun sequence	207030..207467	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHES010000058.1 Salmonella enterica strain PNUSAS367137 SAMN36730267-rid18904383.guided.49, whole genome shotgun sequence	1021..1458	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNHES010000028.1 Salmonella enterica strain PNUSAS367137 SAMN36730267-rid18904383.denovo.28, whole genome shotgun sequence	44717..45359	enterobacteriales	IncFII(S)	100	262 / 262	ABNHES010000028.1 Salmonella enterica strain PNUSAS367137 SAMN36730267-rid18904383.denovo.28, whole genome shotgun sequence	29371..29632																																																avrA	ABNHES010000005.1	208704..209573	99.885	870	0						
GCA_032327355.1_PDT001831108.1_genomic.fna	Salmonella_enterica	0.5216	156.98 KB	8	aroC_13,dnaN_11,hemD_25,hisD_197,purE_12,sucA_71,thrA_4	548	21:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_197	purE	100	100	purE_12	sucA	100	100	sucA_71	thrA	100	100	thrA_4	21	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Minnesota		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHEU010000001.1 Salmonella enterica strain PNUSAS367139 SAMN36730265-rid18904373.denovo.01, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.06	413/438	ABNHEU010000051.1 Salmonella enterica strain PNUSAS367139 SAMN36730265-rid18904373.guided.44, whole genome shotgun sequence	1..413	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHEU010000003.1	151497..152366	99.31	870	0						
GCA_032327375.1_PDT001831107.1_genomic.fna	Salmonella_enterica	0.5214	281.104 KB	5	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNHET010000001.1 Salmonella enterica strain PNUSAS367132 SAMN36730269-rid18904363.denovo.01, whole genome shotgun sequence	353288..353725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNHET010000038.1 Salmonella enterica strain PNUSAS367132 SAMN36730269-rid18904363.guided.28, whole genome shotgun sequence	3819..4256	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHET010000005.1	130918..131787	99.54	870	0						
GCA_032327395.1_PDT001831105.1_genomic.fna	Salmonella_enterica	0.5226	329.253 KB	4	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNHEW010000001.1 Salmonella enterica strain PNUSAS367144 SAMN36730263-rid18904343.denovo.01, whole genome shotgun sequence	760928..761365	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNHEW010000026.1 Salmonella enterica strain PNUSAS367144 SAMN36730263-rid18904343.guided.21, whole genome shotgun sequence	24919..25356	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNHEW010000002.1	151330..152199	99.77	870	0						
GCA_032327415.1_PDT001831103.1_genomic.fna	Salmonella_enterica	0.5202	366.966 KB	5	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHEX010000001.1 Salmonella enterica strain PNUSAS367135 SAMN36730273-rid18904323.denovo.01, whole genome shotgun sequence	494296..494733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHEX010000031.1 Salmonella enterica strain PNUSAS367135 SAMN36730273-rid18904323.guided.24, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNHEX010000027.1 Salmonella enterica strain PNUSAS367135 SAMN36730273-rid18904323.denovo.30, whole genome shotgun sequence	1905..2035																																																						avrA	ABNHEX010000003.1	99580..100449	98.966	870	0						
GCA_032327435.1_PDT001831106.1_genomic.fna	Salmonella_enterica	0.5213	406.073 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHEV010000001.1 Salmonella enterica strain PNUSAS367143 SAMN36730258-rid18904353.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHEV010000029.1 Salmonella enterica strain PNUSAS367143 SAMN36730258-rid18904353.guided.20, whole genome shotgun sequence	8885..9322	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHEV010000020.1 Salmonella enterica strain PNUSAS367143 SAMN36730258-rid18904353.denovo.21, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNHEV010000021.1 Salmonella enterica strain PNUSAS367143 SAMN36730258-rid18904353.denovo.24, whole genome shotgun sequence	3395..3656																																																avrA	ABNHEV010000002.1	505967..506836	99.54	870	0						
GCA_032327455.1_PDT001831102.1_genomic.fna	Salmonella_enterica	0.5226	377.013 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNHEZ010000001.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.denovo.01, whole genome shotgun sequence	462722..463159	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNHEZ010000028.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.denovo.33, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNHEZ010000037.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.guided.24, whole genome shotgun sequence	1996..2433	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNHEZ010000041.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.guided.32, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNHEZ010000028.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.denovo.33, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNHEZ010000041.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.guided.32, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNHEZ010000027.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.denovo.31, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNHEZ010000040.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.guided.30, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNHEZ010000026.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.denovo.27, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNHEZ010000042.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.guided.35, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNHEZ010000028.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.denovo.33, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNHEZ010000041.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.guided.32, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNHEZ010000032.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.denovo.40, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNHEZ010000044.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.guided.39, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNHEZ010000026.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.denovo.27, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNHEZ010000043.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.guided.36, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNHEZ010000026.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.denovo.27, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNHEZ010000043.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.guided.36, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNHEZ010000023.1 Salmonella enterica strain PNUSAS367146 SAMN36730257-rid18904313.denovo.23, whole genome shotgun sequence	4434..4684																																																						avrA	ABNHEZ010000002.1	553473..554342	99.77	870	0						
GCA_032327475.1_PDT001831101.1_genomic.fna	Salmonella_enterica	0.5205	225.988 KB	7	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNHEY010000002.1 Salmonella enterica strain PNUSAS367134 SAMN36730270-rid18904303.denovo.02, whole genome shotgun sequence	260679..261116	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNHEY010000039.1 Salmonella enterica strain PNUSAS367134 SAMN36730270-rid18904303.guided.36, whole genome shotgun sequence	2315..2752	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABNHEY010000028.1 Salmonella enterica strain PNUSAS367134 SAMN36730270-rid18904303.denovo.28, whole genome shotgun sequence	11321..11582																																																																	
GCA_032327515.1_PDT001831100.1_genomic.fna	Salmonella_enterica	0.5214	207.178 KB	8	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHFA010000003.1 Salmonella enterica strain PNUSAS367133 SAMN36730271-rid18904293.denovo.03, whole genome shotgun sequence	75981..76418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHFA010000049.1 Salmonella enterica strain PNUSAS367133 SAMN36730271-rid18904293.guided.31, whole genome shotgun sequence	19619..20056	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHFA010000011.1	140203..141071	99.195	870	0						
GCA_032327535.1_PDT001912368.1_genomic.fna	Salmonella_enterica	0.5227	203.771 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHFB010000001.1 Salmonella enterica strain PNUSAS388321 SAMN37658834-rid19581383.denovo.01, whole genome shotgun sequence	460175..460612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNHFB010000044.1 Salmonella enterica strain PNUSAS388321 SAMN37658834-rid19581383.guided.32, whole genome shotgun sequence	3749..4186	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHFB010000004.1	95321..96190	99.655	870	0						
GCA_032327575.1_PDT001912350.1_genomic.fna	Salmonella_enterica	0.5227	90.121 KB	21	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHFE010000011.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325426 SAMN37658794-rid19581203.denovo.011, whole genome shotgun sequence	52284..52721	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNHFE010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325426 SAMN37658794-rid19581203.denovo.056, whole genome shotgun sequence	22938..23729	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHFE010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325426 SAMN37658794-rid19581203.denovo.056, whole genome shotgun sequence	22938..23729	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNHFE010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325426 SAMN37658794-rid19581203.denovo.089, whole genome shotgun sequence	720..1745	Hygromycin	V01499	aadA1	99.75	792/792	ABNHFE010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325426 SAMN37658794-rid19581203.guided.055, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHFE010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325426 SAMN37658794-rid19581203.guided.055, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNHFE010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325426 SAMN37658794-rid19581203.guided.084, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNHFE010000122.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325426 SAMN37658794-rid19581203.guided.094, whole genome shotgun sequence	761..1786	Hygromycin	V01499	floR	98.19	1214/1215	ABNHFE010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325426 SAMN37658794-rid19581203.denovo.091, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNHFE010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325426 SAMN37658794-rid19581203.guided.090, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNHFE010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325426 SAMN37658794-rid19581203.denovo.056, whole genome shotgun sequence	21594..22433	Sulfamethoxazole	U12338	sul1	100	840/840	ABNHFE010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325426 SAMN37658794-rid19581203.guided.055, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNHFE010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325426 SAMN37658794-rid19581203.denovo.056, whole genome shotgun sequence	7878..9077	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNHFE010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325426 SAMN37658794-rid19581203.guided.055, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNHFE010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325426 SAMN37658794-rid19581203.denovo.039, whole genome shotgun sequence	36633..37192																																																						avrA	ABNHFE010000002.1	124399..125268	99.655	870	0						
GCA_032327595.1_PDT001831098.1_genomic.fna	Salmonella_enterica	0.5224	677.626 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNHFF010000001.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.denovo.01, whole genome shotgun sequence	638989..639426	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNHFF010000021.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.denovo.26, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNHFF010000027.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.guided.15, whole genome shotgun sequence	20585..21022	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNHFF010000031.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.guided.25, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNHFF010000021.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.denovo.26, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNHFF010000031.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.guided.25, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNHFF010000020.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.denovo.23, whole genome shotgun sequence	6582..7487	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNHFF010000030.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.guided.24, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNHFF010000019.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.denovo.22, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNHFF010000032.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNHFF010000021.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.denovo.26, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNHFF010000031.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.guided.25, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNHFF010000020.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.denovo.23, whole genome shotgun sequence	432..1271	Sulfamethoxazole	U12338	sul1	100	840/840	ABNHFF010000034.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.guided.30, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNHFF010000019.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.denovo.22, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNHFF010000033.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.guided.28, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNHFF010000019.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.denovo.22, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNHFF010000033.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.guided.28, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNHFF010000016.1 Salmonella enterica strain PNUSAS367145 SAMN36730262-rid18904273.denovo.17, whole genome shotgun sequence	4434..4684																																																						avrA	ABNHFF010000002.1	553460..554329	99.77	870	0						
GCA_032327615.1_PDT001831097.1_genomic.fna	Salmonella_enterica	0.52	85.041 KB	19	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(B),tet(B)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHFG010000007.1 Salmonella enterica strain PNUSAS367140 SAMN36730259-rid18904263.denovo.007, whole genome shotgun sequence	62321..62758	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHFG010000126.1 Salmonella enterica strain PNUSAS367140 SAMN36730259-rid18904263.guided.101, whole genome shotgun sequence	534..971	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNHFG010000097.1 Salmonella enterica strain PNUSAS367140 SAMN36730259-rid18904263.denovo.100, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNHFG010000127.1 Salmonella enterica strain PNUSAS367140 SAMN36730259-rid18904263.guided.107, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	tet(B)	100	1206/1206	ABNHFG010000089.1 Salmonella enterica strain PNUSAS367140 SAMN36730259-rid18904263.denovo.090, whole genome shotgun sequence	2525..3730	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNHFG010000124.1 Salmonella enterica strain PNUSAS367140 SAMN36730259-rid18904263.guided.095, whole genome shotgun sequence	1296..2501	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNHFG010000097.1 Salmonella enterica strain PNUSAS367140 SAMN36730259-rid18904263.denovo.100, whole genome shotgun sequence	1150..1280																																																						avrA	ABNHFG010000019.1	81933..82802	98.966	870	0						
GCA_032327635.1_PDT001831096.1_genomic.fna	Salmonella_enterica	0.5223	225.541 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNHFH010000001.1 Salmonella enterica strain PNUSAS367131 SAMN36730268-rid18903863.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNHFH010000052.1 Salmonella enterica strain PNUSAS367131 SAMN36730268-rid18903863.guided.42, whole genome shotgun sequence	673..1110	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNHFH010000037.1 Salmonella enterica strain PNUSAS367131 SAMN36730268-rid18903863.denovo.37, whole genome shotgun sequence	4935..5577	enterobacteriales	IncFII(S)	100	262 / 262	ABNHFH010000029.1 Salmonella enterica strain PNUSAS367131 SAMN36730268-rid18903863.denovo.29, whole genome shotgun sequence	29375..29636																																																avrA	ABNHFH010000009.1	143228..144096	100	869	0						
GCA_032327655.1_PDT001831095.1_genomic.fna	Salmonella_enterica	0.5215	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHFI010000001.1 Salmonella enterica strain PNUSAS367142 SAMN36730261-rid18904253.denovo.01, whole genome shotgun sequence	771821..772258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHFI010000028.1 Salmonella enterica strain PNUSAS367142 SAMN36730261-rid18904253.guided.21, whole genome shotgun sequence	10891..11328	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHFI010000016.1 Salmonella enterica strain PNUSAS367142 SAMN36730261-rid18904253.denovo.16, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNHFI010000021.1 Salmonella enterica strain PNUSAS367142 SAMN36730261-rid18904253.denovo.24, whole genome shotgun sequence	3404..3665																																																avrA	ABNHFI010000002.1	553636..554505	99.54	870	0						
GCA_032327675.1_PDT001831093.1_genomic.fna	Salmonella_enterica	0.5223	278.475 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNHFK010000003.1 Salmonella enterica strain PNUSAS367136 SAMN36730266-rid18904233.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNHFK010000044.1 Salmonella enterica strain PNUSAS367136 SAMN36730266-rid18904233.guided.33, whole genome shotgun sequence	2664..3101	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNHFK010000016.1 Salmonella enterica strain PNUSAS367136 SAMN36730266-rid18904233.denovo.16, whole genome shotgun sequence	6821..7463	enterobacteriales	IncFII(S)	100	262 / 262	ABNHFK010000016.1 Salmonella enterica strain PNUSAS367136 SAMN36730266-rid18904233.denovo.16, whole genome shotgun sequence	22548..22809																																																avrA	ABNHFK010000001.1	434057..434925	100	869	0						
GCA_032327695.1_PDT001831094.1_genomic.fna	Salmonella_enterica	0.5217	180.954 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul2,tet(B),tet(B)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHFJ010000001.1 Salmonella enterica strain PNUSAS367138 SAMN36730272-rid18904243.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHFJ010000046.1 Salmonella enterica strain PNUSAS367138 SAMN36730272-rid18904243.denovo.50, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNHFJ010000046.1 Salmonella enterica strain PNUSAS367138 SAMN36730272-rid18904243.denovo.50, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNHFJ010000058.1 Salmonella enterica strain PNUSAS367138 SAMN36730272-rid18904243.guided.37, whole genome shotgun sequence	19898..20335	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHFJ010000064.1 Salmonella enterica strain PNUSAS367138 SAMN36730272-rid18904243.guided.57, whole genome shotgun sequence	891..1727	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNHFJ010000064.1 Salmonella enterica strain PNUSAS367138 SAMN36730272-rid18904243.guided.57, whole genome shotgun sequence	88..891	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNHFJ010000049.1 Salmonella enterica strain PNUSAS367138 SAMN36730272-rid18904243.denovo.56, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNHFJ010000063.1 Salmonella enterica strain PNUSAS367138 SAMN36730272-rid18904243.guided.55, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNHFJ010000048.1 Salmonella enterica strain PNUSAS367138 SAMN36730272-rid18904243.denovo.52, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNHFJ010000061.1 Salmonella enterica strain PNUSAS367138 SAMN36730272-rid18904243.guided.53, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABNHFJ010000046.1 Salmonella enterica strain PNUSAS367138 SAMN36730272-rid18904243.denovo.50, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNHFJ010000062.1 Salmonella enterica strain PNUSAS367138 SAMN36730272-rid18904243.guided.54, whole genome shotgun sequence	1210..2025	Sulfamethoxazole	HQ840942	tet(B)	99.92	1206/1206	ABNHFJ010000039.1 Salmonella enterica strain PNUSAS367138 SAMN36730272-rid18904243.denovo.42, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABNHFJ010000060.1 Salmonella enterica strain PNUSAS367138 SAMN36730272-rid18904243.guided.44, whole genome shotgun sequence	4116..5321	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	100	131 / 131	ABNHFJ010000048.1 Salmonella enterica strain PNUSAS367138 SAMN36730272-rid18904243.denovo.52, whole genome shotgun sequence	1522..1652																																																						avrA	ABNHFJ010000002.1	508753..509622	99.885	870	0						
GCA_032327715.1_PDT001831092.1_genomic.fna	Salmonella_enterica	0.5212	226.839 KB	7	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHFL010000013.1 Salmonella enterica strain PNUSAS367126 SAMN36730242-rid18904223.denovo.13, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHFL010000052.1 Salmonella enterica strain PNUSAS367126 SAMN36730242-rid18904223.guided.33, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNHFL010000020.1 Salmonella enterica strain PNUSAS367126 SAMN36730242-rid18904223.denovo.20, whole genome shotgun sequence	34957..35490																																																						avrA	ABNHFL010000001.1	123895..124761	98.851	870	0						
GCA_032327735.1_PDT001831091.1_genomic.fna	Salmonella_enterica	0.5211	411.847 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNHFN010000001.1 Salmonella enterica strain PNUSAS367123 SAMN36730253-rid18904213.denovo.01, whole genome shotgun sequence	318173..318610	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNHFN010000027.1 Salmonella enterica strain PNUSAS367123 SAMN36730253-rid18904213.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNHFN010000016.1 Salmonella enterica strain PNUSAS367123 SAMN36730253-rid18904213.denovo.16, whole genome shotgun sequence	7508..8041																																																						avrA	ABNHFN010000002.1	563792..564661	99.77	870	0						
GCA_032327755.1_PDT001831090.1_genomic.fna	Salmonella_enterica	0.5214	236.081 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHFM010000002.1 Salmonella enterica strain PNUSAS367111 SAMN36730244-rid18904203.denovo.02, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHFM010000038.1 Salmonella enterica strain PNUSAS367111 SAMN36730244-rid18904203.denovo.40, whole genome shotgun sequence	6786..7622	Streptomycin	M28829	aph(3'')-Ib	100	780/804	ABNHFM010000038.1 Salmonella enterica strain PNUSAS367111 SAMN36730244-rid18904203.denovo.40, whole genome shotgun sequence	7622..8401	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNHFM010000059.1 Salmonella enterica strain PNUSAS367111 SAMN36730244-rid18904203.guided.39, whole genome shotgun sequence	3388..4224	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNHFM010000059.1 Salmonella enterica strain PNUSAS367111 SAMN36730244-rid18904203.guided.39, whole genome shotgun sequence	2585..3388	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNHFM010000061.1 Salmonella enterica strain PNUSAS367111 SAMN36730244-rid18904203.guided.46, whole genome shotgun sequence	1574..2011	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNHFM010000038.1 Salmonella enterica strain PNUSAS367111 SAMN36730244-rid18904203.denovo.40, whole genome shotgun sequence	85..900	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNHFM010000059.1 Salmonella enterica strain PNUSAS367111 SAMN36730244-rid18904203.guided.39, whole genome shotgun sequence	1709..2524	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNHFM010000038.1 Salmonella enterica strain PNUSAS367111 SAMN36730244-rid18904203.denovo.40, whole genome shotgun sequence	4251..5525	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNHFM010000059.1 Salmonella enterica strain PNUSAS367111 SAMN36730244-rid18904203.guided.39, whole genome shotgun sequence	5485..6759	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNHFM010000038.1 Salmonella enterica strain PNUSAS367111 SAMN36730244-rid18904203.denovo.40, whole genome shotgun sequence	1427..1557	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNHFM010000059.1 Salmonella enterica strain PNUSAS367111 SAMN36730244-rid18904203.guided.39, whole genome shotgun sequence	1052..1182		enterobacteriales	IncFIB(S)	100	643 / 643	ABNHFM010000027.1 Salmonella enterica strain PNUSAS367111 SAMN36730244-rid18904203.denovo.27, whole genome shotgun sequence	44727..45369		enterobacteriales	IncFII(S)	100	262 / 262	ABNHFM010000027.1 Salmonella enterica strain PNUSAS367111 SAMN36730244-rid18904203.denovo.27, whole genome shotgun sequence	29382..29643																																		avrA	ABNHFM010000001.1	452039..452908	99.885	870	0						
GCA_032327775.1_PDT001831089.1_genomic.fna	Salmonella_enterica	0.5202	403.434 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHFP010000011.1 Salmonella enterica strain PNUSAS367117 SAMN36730243-rid18904193.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHFP010000045.1 Salmonella enterica strain PNUSAS367117 SAMN36730243-rid18904193.guided.25, whole genome shotgun sequence	13191..13628	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNHFP010000017.1 Salmonella enterica strain PNUSAS367117 SAMN36730243-rid18904193.denovo.17, whole genome shotgun sequence	34958..35491	enterobacteriales	IncX1	98.4	374 / 374	ABNHFP010000021.1 Salmonella enterica strain PNUSAS367117 SAMN36730243-rid18904193.denovo.21, whole genome shotgun sequence	5010..5383																																																avrA	ABNHFP010000001.1	187691..188557	98.966	870	0						
GCA_032327795.1_PDT001831087.1_genomic.fna	Salmonella_enterica	0.5213	363.493 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,floR,sul2,sul2,sul2,tet(A),tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHFQ010000003.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.denovo.03, whole genome shotgun sequence	159452..159889	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHFQ010000021.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.denovo.21, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNHFQ010000021.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.denovo.21, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNHFQ010000044.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.guided.27, whole genome shotgun sequence	8913..9749	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNHFQ010000044.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.guided.27, whole genome shotgun sequence	8110..8913	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNHFQ010000045.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.guided.28, whole genome shotgun sequence	8913..9749	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNHFQ010000045.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.guided.28, whole genome shotgun sequence	8110..8913	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNHFQ010000048.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.guided.32, whole genome shotgun sequence	5231..5668	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNHFQ010000021.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.denovo.21, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNHFQ010000030.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.denovo.36, whole genome shotgun sequence	3134..3957	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNHFQ010000030.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.denovo.36, whole genome shotgun sequence	3134..3957	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNHFQ010000030.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.denovo.36, whole genome shotgun sequence	3134..3957	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNHFQ010000043.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.guided.25, whole genome shotgun sequence	21107..22252	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNHFQ010000051.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.guided.40, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNHFQ010000051.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.guided.40, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNHFQ010000051.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.guided.40, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNHFQ010000021.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.denovo.21, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNHFQ010000049.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.guided.37, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNHFQ010000050.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.guided.38, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNHFQ010000021.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.denovo.21, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNHFQ010000044.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.guided.27, whole genome shotgun sequence	7234..8049	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNHFQ010000045.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.guided.28, whole genome shotgun sequence	7234..8049	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNHFQ010000021.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.denovo.21, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNHFQ010000044.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.guided.27, whole genome shotgun sequence	11010..12284	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNHFQ010000045.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.guided.28, whole genome shotgun sequence	11010..12284	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																													enterobacteriales	IncC	100	417 / 417	ABNHFQ010000031.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.denovo.39, whole genome shotgun sequence	1054..1470	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNHFQ010000016.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.denovo.16, whole genome shotgun sequence	16853..17112		enterobacteriales	IncX1	98.66	374 / 374	ABNHFQ010000016.1 Salmonella enterica strain PNUSAS367120 SAMN36730252-rid18904173.denovo.16, whole genome shotgun sequence	52707..53080																																									avrA	ABNHFQ010000007.1	173549..174417	99.54	870	0						
GCA_032327815.1_PDT001831088.1_genomic.fna	Salmonella_enterica	0.5219	314.696 KB	6	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHFO010000001.1 Salmonella enterica strain PNUSAS367122 SAMN36730246-rid18904183.denovo.01, whole genome shotgun sequence	458965..459402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHFO010000051.1 Salmonella enterica strain PNUSAS367122 SAMN36730246-rid18904183.guided.41, whole genome shotgun sequence	1501..1938	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNHFO010000052.1 Salmonella enterica strain PNUSAS367122 SAMN36730246-rid18904183.guided.42, whole genome shotgun sequence	1501..1938	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																							enterobacteriales	IncFIB(S)	100	643 / 643	ABNHFO010000024.1 Salmonella enterica strain PNUSAS367122 SAMN36730246-rid18904183.denovo.24, whole genome shotgun sequence	24650..25292	enterobacteriales	IncFII(S)	100	262 / 262	ABNHFO010000024.1 Salmonella enterica strain PNUSAS367122 SAMN36730246-rid18904183.denovo.24, whole genome shotgun sequence	9304..9565																																																avrA	ABNHFO010000003.1	174642..175511	99.885	870	0						
GCA_032327825.1_PDT001831086.1_genomic.fna	Salmonella_enterica	0.5223	396.478 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNHFR010000001.1 Salmonella enterica strain PNUSAS367127 SAMN36730251-rid18904163.denovo.01, whole genome shotgun sequence	482113..482550	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNHFR010000026.1 Salmonella enterica strain PNUSAS367127 SAMN36730251-rid18904163.guided.19, whole genome shotgun sequence	7691..8128	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHFR010000002.1	563809..564678	99.77	870	0						
GCA_032327855.1_PDT001831085.1_genomic.fna	Salmonella_enterica	0.5208	388.109 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNHFS010000001.1 Salmonella enterica strain PNUSAS367116 SAMN36730254-rid18904153.denovo.01, whole genome shotgun sequence	835211..835648	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNHFS010000027.1 Salmonella enterica strain PNUSAS367116 SAMN36730254-rid18904153.guided.21, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNHFS010000015.1 Salmonella enterica strain PNUSAS367116 SAMN36730254-rid18904153.denovo.15, whole genome shotgun sequence	34320..34853																																																						avrA	ABNHFS010000006.1	148520..149389	99.77	870	0						
GCA_032327875.1_PDT001831084.1_genomic.fna	Salmonella_enterica	0.5204	489.494 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHFT010000001.1 Salmonella enterica strain PNUSAS367113 SAMN36730250-rid18904143.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHFT010000027.1 Salmonella enterica strain PNUSAS367113 SAMN36730250-rid18904143.guided.20, whole genome shotgun sequence	6030..6467	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHFT010000018.1 Salmonella enterica strain PNUSAS367113 SAMN36730250-rid18904143.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNHFT010000019.1 Salmonella enterica strain PNUSAS367113 SAMN36730250-rid18904143.denovo.21, whole genome shotgun sequence	3393..3654		enterobacteriales	IncX1	98.93	374 / 374	ABNHFT010000014.1 Salmonella enterica strain PNUSAS367113 SAMN36730250-rid18904143.denovo.15, whole genome shotgun sequence	14360..14733																																									avrA	ABNHFT010000002.1	553690..554559	99.54	870	0						
GCA_032327895.1_PDT001831081.1_genomic.fna	Salmonella_enterica	0.5213	556.197 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHFW010000001.1 Salmonella enterica strain PNUSAS367125 SAMN36730247-rid18904113.denovo.01, whole genome shotgun sequence	643570..644007	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHFW010000023.1 Salmonella enterica strain PNUSAS367125 SAMN36730247-rid18904113.guided.18, whole genome shotgun sequence	3732..4169	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032327915.1_PDT001831082.1_genomic.fna	Salmonella_enterica	0.5212	207.047 KB	9	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHFV010000002.1 Salmonella enterica strain PNUSAS367114 SAMN36730245-rid18904123.denovo.02, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHFV010000049.1 Salmonella enterica strain PNUSAS367114 SAMN36730245-rid18904123.guided.37, whole genome shotgun sequence	2987..3424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNHFV010000025.1 Salmonella enterica strain PNUSAS367114 SAMN36730245-rid18904123.denovo.25, whole genome shotgun sequence	2806..3339																																																						avrA	ABNHFV010000008.1	189078..189947	99.54	870	0						
GCA_032327935.1_PDT001831083.1_genomic.fna	Salmonella_enterica	0.5219	257.545 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHFU010000001.1 Salmonella enterica strain PNUSAS367118 SAMN36730249-rid18904133.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHFU010000043.1 Salmonella enterica strain PNUSAS367118 SAMN36730249-rid18904133.guided.30, whole genome shotgun sequence	11432..11869	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNHFU010000006.1	95270..96138	99.77	870	0						
GCA_032327955.1_PDT001831077.1_genomic.fna	Salmonella_enterica	0.5213	409.016 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHFZ010000001.1 Salmonella enterica strain PNUSAS367121 SAMN36729356-rid18904073.denovo.01, whole genome shotgun sequence	643800..644237	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHFZ010000023.1 Salmonella enterica strain PNUSAS367121 SAMN36729356-rid18904073.guided.16, whole genome shotgun sequence	7437..7874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032327975.1_PDT001831080.1_genomic.fna	Salmonella_enterica	0.5207	521.137 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNHFX010000001.1 Salmonella enterica strain PNUSAS367119 SAMN36730256-rid18904103.denovo.01, whole genome shotgun sequence	834600..835037	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNHFX010000023.1 Salmonella enterica strain PNUSAS367119 SAMN36730256-rid18904103.guided.17, whole genome shotgun sequence	5646..6083	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNHFX010000012.1 Salmonella enterica strain PNUSAS367119 SAMN36730256-rid18904103.denovo.12, whole genome shotgun sequence	34944..35477																																																						avrA	ABNHFX010000002.1	583346..584215	99.77	870	0						
GCA_032327995.1_PDT001831078.1_genomic.fna	Salmonella_enterica	0.5211	396.912 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHFY010000010.1 Salmonella enterica strain PNUSAS367124 SAMN36730248-rid18904083.denovo.10, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHFY010000031.1 Salmonella enterica strain PNUSAS367124 SAMN36730248-rid18904083.guided.24, whole genome shotgun sequence	16158..16595	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNHFY010000018.1 Salmonella enterica strain PNUSAS367124 SAMN36730248-rid18904083.denovo.18, whole genome shotgun sequence	34957..35490																																																						avrA	ABNHFY010000002.1	187683..188549	98.966	870	0						
GCA_032328015.1_PDT001831076.1_genomic.fna	Salmonella_enterica	0.521	408.88 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHGA010000001.1 Salmonella enterica strain PNUSAS367115 SAMN36729355-rid18904063.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHGA010000031.1 Salmonella enterica strain PNUSAS367115 SAMN36729355-rid18904063.guided.19, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHGA010000017.1 Salmonella enterica strain PNUSAS367115 SAMN36729355-rid18904063.denovo.17, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	ABNHGA010000022.1 Salmonella enterica strain PNUSAS367115 SAMN36729355-rid18904063.denovo.24, whole genome shotgun sequence	3398..3659																																																avrA	ABNHGA010000002.1	585474..586343	99.54	870	0						
GCA_032328275.1_PDT001831052.1_genomic.fna	Salmonella_enterica	0.5211	407.045 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHGM010000001.1 Salmonella enterica strain PNUSAS367099 SAMN36729238-rid18903843.denovo.01, whole genome shotgun sequence	774343..774780	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHGM010000022.1 Salmonella enterica strain PNUSAS367099 SAMN36729238-rid18903843.guided.14, whole genome shotgun sequence	30089..30526	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHGM010000017.1 Salmonella enterica strain PNUSAS367099 SAMN36729238-rid18903843.denovo.19, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNHGM010000018.1 Salmonella enterica strain PNUSAS367099 SAMN36729238-rid18903843.denovo.21, whole genome shotgun sequence	3379..3640																																																avrA	ABNHGM010000002.1	553635..554504	99.54	870	0						
GCA_032328295.1_PDT001831051.1_genomic.fna	Salmonella_enterica	0.5212	433.187 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHGO010000001.1 Salmonella enterica strain PNUSAS367097 SAMN36729243-rid18902383.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHGO010000024.1 Salmonella enterica strain PNUSAS367097 SAMN36729243-rid18902383.guided.18, whole genome shotgun sequence	16108..16545	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHGO010000017.1 Salmonella enterica strain PNUSAS367097 SAMN36729243-rid18902383.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNHGO010000018.1 Salmonella enterica strain PNUSAS367097 SAMN36729243-rid18902383.denovo.21, whole genome shotgun sequence	3392..3653																																																avrA	ABNHGO010000002.1	553636..554505	99.54	870	0						
GCA_032328335.1_PDT001831049.1_genomic.fna	Salmonella_enterica	0.5201	202.369 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	3	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,tet(B),tet(B)	0		2	IncX1,IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHGQ010000001.1 Salmonella enterica strain PNUSAS367094 SAMN36729242-rid18902373.denovo.01, whole genome shotgun sequence	233259..233696	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNHGQ010000042.1 Salmonella enterica strain PNUSAS367094 SAMN36729242-rid18902373.denovo.46, whole genome shotgun sequence	555..1370	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aac(6')-Iaa	100	438/438	ABNHGQ010000075.1 Salmonella enterica strain PNUSAS367094 SAMN36729242-rid18902373.guided.39, whole genome shotgun sequence	3917..4354	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNHGQ010000077.1 Salmonella enterica strain PNUSAS367094 SAMN36729242-rid18902373.guided.45, whole genome shotgun sequence	1840..2655	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	tet(B)	100	1206/1206	ABNHGQ010000037.1 Salmonella enterica strain PNUSAS367094 SAMN36729242-rid18902373.denovo.38, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNHGQ010000078.1 Salmonella enterica strain PNUSAS367094 SAMN36729242-rid18902373.guided.53, whole genome shotgun sequence	723..1928	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncX1	98.66	374 / 374	ABNHGQ010000031.1 Salmonella enterica strain PNUSAS367094 SAMN36729242-rid18902373.denovo.31, whole genome shotgun sequence	6956..7329	enterobacteriales	IncY	99.74	765 / 765	ABNHGQ010000049.1 Salmonella enterica strain PNUSAS367094 SAMN36729242-rid18902373.denovo.54, whole genome shotgun sequence	1802..2566																																																avrA	ABNHGQ010000003.1	93865..94734	99.885	870	0						
GCA_032328375.1_PDT001831045.1_genomic.fna	Salmonella_enterica	0.5224	397.629 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHGV010000001.1 Salmonella enterica strain PNUSAS367102 SAMN36729234-rid18903813.denovo.01, whole genome shotgun sequence	790294..790731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHGV010000025.1 Salmonella enterica strain PNUSAS367102 SAMN36729234-rid18903813.guided.17, whole genome shotgun sequence	5080..5517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHGV010000005.1	183176..184045	98.966	870	0						
GCA_032328535.1_PDT001912376.1_genomic.fna	Salmonella_enterica	0.5204	258.082 KB	6	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNHHA010000001.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325469 SAMN37659623-rid19581463.denovo.01, whole genome shotgun sequence	579417..579854	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNHHA010000033.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325469 SAMN37659623-rid19581463.guided.17, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNHHA010000024.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325469 SAMN37659623-rid19581463.denovo.27, whole genome shotgun sequence	239..369																																																						avrA	ABNHHA010000007.1	174149..175018	99.425	870	0						
GCA_032328555.1_PDT001912374.1_genomic.fna	Salmonella_enterica	0.5212	187.53 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHHB010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325465 SAMN37658887-rid19581443.denovo.01, whole genome shotgun sequence	381672..382109	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHHB010000059.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325465 SAMN37658887-rid19581443.guided.34, whole genome shotgun sequence	13705..14142	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNHHB010000044.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325465 SAMN37658887-rid19581443.denovo.47, whole genome shotgun sequence	3229..3380																																																						avrA	ABNHHB010000011.1	95312..96180	99.77	870	0						
GCA_032328575.1_PDT001912373.1_genomic.fna	Salmonella_enterica	0.5208	298.929 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHHC010000004.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.denovo.04, whole genome shotgun sequence	158723..159160	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHHC010000026.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.denovo.26, whole genome shotgun sequence	28247..29083	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNHHC010000026.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.denovo.26, whole genome shotgun sequence	27444..28247	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNHHC010000036.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.guided.27, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHHC010000039.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.guided.34, whole genome shotgun sequence	4810..5646	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNHHC010000039.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.guided.34, whole genome shotgun sequence	4007..4810	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNHHC010000034.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.denovo.41, whole genome shotgun sequence	115..1260	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNHHC010000042.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.guided.40, whole genome shotgun sequence	156..1301	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABNHHC010000026.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.denovo.26, whole genome shotgun sequence	32219..33432	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNHHC010000040.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.guided.37, whole genome shotgun sequence	1112..2325	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNHHC010000026.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.denovo.26, whole genome shotgun sequence	26568..27383	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNHHC010000039.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.guided.34, whole genome shotgun sequence	3131..3946	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNHHC010000026.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.denovo.26, whole genome shotgun sequence	30344..31618	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNHHC010000041.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.guided.38, whole genome shotgun sequence	902..2176	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABNHHC010000022.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.denovo.22, whole genome shotgun sequence	16815..17231	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNHHC010000021.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.denovo.21, whole genome shotgun sequence	16916..17175		enterobacteriales	IncX1	98.66	374 / 374	ABNHHC010000021.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325468 SAMN37658890-rid19581433.denovo.21, whole genome shotgun sequence	52770..53143																																									avrA	ABNHHC010000001.1	504306..505174	99.54	870	0						
GCA_032328595.1_PDT001912362.1_genomic.fna	Salmonella_enterica	0.5221	508.461 KB	3	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHHD010000001.1 Salmonella enterica strain PNUSAS388326 SAMN37658841-rid19581323.denovo.01, whole genome shotgun sequence	499296..499733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHHD010000026.1 Salmonella enterica strain PNUSAS388326 SAMN37658841-rid19581323.guided.20, whole genome shotgun sequence	5097..5534	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHHD010000003.1	160504..161373	98.966	870	0						
GCA_032328615.1_PDT001912356.1_genomic.fna	Salmonella_enterica	0.5209	60.314 KB	30	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	-:f,g:-	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	-	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNHHE010000022.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325434 SAMN37658831-rid19581263.denovo.022, whole genome shotgun sequence	52240..52677	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNHHE010000177.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325434 SAMN37658831-rid19581263.guided.065, whole genome shotgun sequence	16421..16858	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNHHE010000037.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325434 SAMN37658831-rid19581263.denovo.037, whole genome shotgun sequence	42309..42731	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNHHE010000178.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325434 SAMN37658831-rid19581263.guided.080, whole genome shotgun sequence	18575..18997	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	ABNHHE010000125.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325434 SAMN37658831-rid19581263.denovo.130, whole genome shotgun sequence	2160..3365	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNHHE010000180.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325434 SAMN37658831-rid19581263.guided.129, whole genome shotgun sequence	2199..3404	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHHE010000009.1	85770..86639	99.655	870	0						
GCA_032329535.1_PDT001912370.1_genomic.fna	Salmonella_enterica	0.5217	56.012 KB	27	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	2	aac(6')-Iaa,aac(6')-Iaa,tet(C),tet(C)	1	parC_p.T57S	3	Col(pHAD28),Col440I,ColE10	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNHIX010000053.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325435 SAMN37658881-rid19581403.denovo.053, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNHIX010000193.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325435 SAMN37658881-rid19581403.guided.066, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197	tet(C)	99.83	1191/1191	ABNHIX010000105.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325435 SAMN37658881-rid19581403.denovo.107, whole genome shotgun sequence	1430..2620	Doxycycline, Tetracycline	AF055345	tet(C)	99.83	1191/1191	ABNHIX010000194.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325435 SAMN37658881-rid19581403.guided.127, whole genome shotgun sequence	1469..2659	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNHIX010000130.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325435 SAMN37658881-rid19581403.denovo.133, whole genome shotgun sequence	557..687	enterobacteriales	Col440I	94.74	114 / 114	ABNHIX010000147.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325435 SAMN37658881-rid19581403.denovo.150, whole genome shotgun sequence	787..900		enterobacteriales	ColE10	100	177 / 177	ABNHIX010000105.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325435 SAMN37658881-rid19581403.denovo.107, whole genome shotgun sequence	7394..7570																																									avrA	ABNHIX010000033.1	43546..44415	99.54	870	0						
GCA_032332495.1_PDT001830751.1_genomic.fna	Salmonella_enterica	0.5212	412.557 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHOP010000001.1 Salmonella enterica strain PNUSAS367100 SAMN36729233-rid18902593.denovo.01, whole genome shotgun sequence	747216..747653	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHOP010000029.1 Salmonella enterica strain PNUSAS367100 SAMN36729233-rid18902593.guided.23, whole genome shotgun sequence	1533..1970	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHOP010000020.1 Salmonella enterica strain PNUSAS367100 SAMN36729233-rid18902593.denovo.20, whole genome shotgun sequence	5863..6505	enterobacteriales	IncFII(S)	100	262 / 262	ABNHOP010000021.1 Salmonella enterica strain PNUSAS367100 SAMN36729233-rid18902593.denovo.24, whole genome shotgun sequence	3331..3592																																																avrA	ABNHOP010000002.1	584130..584999	99.54	870	0						
GCA_032332515.1_PDT001830746.1_genomic.fna	Salmonella_enterica	0.5214	411.215 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHOR010000001.1 Salmonella enterica strain PNUSAS367095 SAMN36729241-rid18902563.denovo.01, whole genome shotgun sequence	542757..543194	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHOR010000028.1 Salmonella enterica strain PNUSAS367095 SAMN36729241-rid18902563.guided.26, whole genome shotgun sequence	1310..1747	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHOR010000019.1 Salmonella enterica strain PNUSAS367095 SAMN36729241-rid18902563.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNHOR010000020.1 Salmonella enterica strain PNUSAS367095 SAMN36729241-rid18902563.denovo.21, whole genome shotgun sequence	3446..3707																																																avrA	ABNHOR010000002.1	553636..554505	99.54	870	0						
GCA_032332555.1_PDT001830740.1_genomic.fna	Salmonella_enterica	0.5216	257.839 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNHOW010000002.1 Salmonella enterica strain PNUSAS367091 SAMN36729237-rid18900943.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNHOW010000058.1 Salmonella enterica strain PNUSAS367091 SAMN36729237-rid18900943.guided.43, whole genome shotgun sequence	1400..1837	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	262 / 262	ABNHOW010000031.1 Salmonella enterica strain PNUSAS367091 SAMN36729237-rid18900943.denovo.33, whole genome shotgun sequence	8627..8888																																																						avrA	ABNHOW010000008.1	175018..175886	100	869	0						
GCA_032332565.1_PDT001830741.1_genomic.fna	Salmonella_enterica	0.5212	381.963 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHOV010000001.1 Salmonella enterica strain PNUSAS367101 SAMN36729236-rid18902533.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHOV010000027.1 Salmonella enterica strain PNUSAS367101 SAMN36729236-rid18902533.guided.15, whole genome shotgun sequence	41903..42340	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHOV010000018.1 Salmonella enterica strain PNUSAS367101 SAMN36729236-rid18902533.denovo.20, whole genome shotgun sequence	3179..3821	enterobacteriales	IncFII(S)	100	262 / 262	ABNHOV010000020.1 Salmonella enterica strain PNUSAS367101 SAMN36729236-rid18902533.denovo.22, whole genome shotgun sequence	3416..3677																																																avrA	ABNHOV010000002.1	553636..554505	99.54	870	0						
GCA_032332595.1_PDT001830744.1_genomic.fna	Salmonella_enterica	0.5207	338.246 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHOU010000001.1 Salmonella enterica strain PNUSAS367093 SAMN36729240-rid18902553.denovo.01, whole genome shotgun sequence	800922..801359	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHOU010000032.1 Salmonella enterica strain PNUSAS367093 SAMN36729240-rid18902553.guided.21, whole genome shotgun sequence	7869..8306	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHOU010000003.1	186911..187780	99.195	870	0						
GCA_032332615.1_PDT001830736.1_genomic.fna	Salmonella_enterica	0.5214	401.214 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHOY010000001.1 Salmonella enterica strain PNUSAS367092 SAMN36729232-rid18902513.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHOY010000026.1 Salmonella enterica strain PNUSAS367092 SAMN36729232-rid18902513.guided.22, whole genome shotgun sequence	3563..4000	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHOY010000019.1 Salmonella enterica strain PNUSAS367092 SAMN36729232-rid18902513.denovo.20, whole genome shotgun sequence	6821..7463	enterobacteriales	IncFII(S)	100	262 / 262	ABNHOY010000020.1 Salmonella enterica strain PNUSAS367092 SAMN36729232-rid18902513.denovo.23, whole genome shotgun sequence	3376..3637																																																avrA	ABNHOY010000002.1	553636..554505	99.54	870	0						
GCA_032332655.1_PDT001830735.1_genomic.fna	Salmonella_enterica	0.522	441.147 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNHOX010000001.1 Salmonella enterica strain PNUSAS367098 SAMN36729217-rid18900913.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNHOX010000020.1 Salmonella enterica strain PNUSAS367098 SAMN36729217-rid18900913.guided.16, whole genome shotgun sequence	7704..8141	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNHOX010000002.1	553514..554383	99.77	870	0						
GCA_032332695.1_PDT001830728.1_genomic.fna	Salmonella_enterica	0.52	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNHPB010000010.1 Salmonella enterica strain PNUSAS367103 SAMN36729216-rid18900873.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNHPB010000054.1 Salmonella enterica strain PNUSAS367103 SAMN36729216-rid18900873.guided.46, whole genome shotgun sequence	2514..2948	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032332735.1_PDT001830725.1_genomic.fna	Salmonella_enterica	0.5217	273.328 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNHPC010000002.1 Salmonella enterica strain PNUSAS366802 SAMN36728530-rid18900853.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNHPC010000057.1 Salmonella enterica strain PNUSAS366802 SAMN36728530-rid18900853.guided.31, whole genome shotgun sequence	16938..17375	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNHPC010000023.1 Salmonella enterica strain PNUSAS366802 SAMN36728530-rid18900853.denovo.23, whole genome shotgun sequence	44718..45360	enterobacteriales	IncFII(S)	100	262 / 262	ABNHPC010000023.1 Salmonella enterica strain PNUSAS366802 SAMN36728530-rid18900853.denovo.23, whole genome shotgun sequence	29372..29633																																																avrA	ABNHPC010000004.1	174409..175277	100	869	0						
GCA_032332755.1_PDT001830724.1_genomic.fna	Salmonella_enterica	0.5211	406.452 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHPD010000004.1 Salmonella enterica strain PNUSAS366791 SAMN36728527-rid18902463.denovo.04, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHPD010000034.1 Salmonella enterica strain PNUSAS366791 SAMN36728527-rid18902463.guided.24, whole genome shotgun sequence	1176..1613	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHPD010000020.1 Salmonella enterica strain PNUSAS366791 SAMN36728527-rid18902463.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNHPD010000022.1 Salmonella enterica strain PNUSAS366791 SAMN36728527-rid18902463.denovo.23, whole genome shotgun sequence	3398..3659																																																avrA	ABNHPD010000001.1	585198..586067	99.54	870	0						
GCA_032332775.1_PDT001830722.1_genomic.fna	Salmonella_enterica	0.5221	257.394 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(3)-VIa,aadA1,aadA1,aadA1,aadA1,aac(3)-VIa,aac(6')-Iaa,sul1,sul1	0		5	Col156,ColpVC,IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNHPF010000001.1 Salmonella enterica strain PNUSAS366808 SAMN36728516-rid18900833.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNHPF010000016.1 Salmonella enterica strain PNUSAS366808 SAMN36728516-rid18900833.denovo.16, whole genome shotgun sequence	73418..74320	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	99.75	792/792	ABNHPF010000016.1 Salmonella enterica strain PNUSAS366808 SAMN36728516-rid18900833.denovo.16, whole genome shotgun sequence	72463..73254	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHPF010000016.1 Salmonella enterica strain PNUSAS366808 SAMN36728516-rid18900833.denovo.16, whole genome shotgun sequence	72463..73254	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNHPF010000061.1 Salmonella enterica strain PNUSAS366808 SAMN36728516-rid18900833.guided.44, whole genome shotgun sequence	5868..6659	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHPF010000061.1 Salmonella enterica strain PNUSAS366808 SAMN36728516-rid18900833.guided.44, whole genome shotgun sequence	5868..6659	Spectinomycin, Streptomycin	JQ414041	aac(3)-VIa	100	903/903	ABNHPF010000062.1 Salmonella enterica strain PNUSAS366808 SAMN36728516-rid18900833.guided.45, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aac(6')-Iaa	99.77	438/438	ABNHPF010000063.1 Salmonella enterica strain PNUSAS366808 SAMN36728516-rid18900833.guided.49, whole genome shotgun sequence	55..492	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNHPF010000016.1 Salmonella enterica strain PNUSAS366808 SAMN36728516-rid18900833.denovo.16, whole genome shotgun sequence	82008..82847	Sulfamethoxazole	U12338	sul1	100	840/840	ABNHPF010000058.1 Salmonella enterica strain PNUSAS366808 SAMN36728516-rid18900833.guided.34, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	Col156	94.81	154 / 154	ABNHPF010000042.1 Salmonella enterica strain PNUSAS366808 SAMN36728516-rid18900833.denovo.47, whole genome shotgun sequence	792..945	enterobacteriales	ColpVC	98.96	193 / 193	ABNHPF010000044.1 Salmonella enterica strain PNUSAS366808 SAMN36728516-rid18900833.denovo.50, whole genome shotgun sequence	805..997		enterobacteriales	IncFIB(S)	100	643 / 643	ABNHPF010000026.1 Salmonella enterica strain PNUSAS366808 SAMN36728516-rid18900833.denovo.26, whole genome shotgun sequence	44755..45397		enterobacteriales	IncFII(S)	100	262 / 262	ABNHPF010000026.1 Salmonella enterica strain PNUSAS366808 SAMN36728516-rid18900833.denovo.26, whole genome shotgun sequence	29409..29670		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNHPF010000016.1 Salmonella enterica strain PNUSAS366808 SAMN36728516-rid18900833.denovo.16, whole genome shotgun sequence	92369..92510		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNHPF010000058.1 Salmonella enterica strain PNUSAS366808 SAMN36728516-rid18900833.guided.34, whole genome shotgun sequence	10739..10880																				avrA	ABNHPF010000007.1	94133..95001	100	869	0						
GCA_032332795.1_PDT001830720.1_genomic.fna	Salmonella_enterica	0.5213	225.478 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHPG010000001.1 Salmonella enterica strain PNUSAS366794 SAMN36728519-rid18900823.denovo.01, whole genome shotgun sequence	221074..221511	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHPG010000067.1 Salmonella enterica strain PNUSAS366794 SAMN36728519-rid18900823.guided.32, whole genome shotgun sequence	3628..4065	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHPG010000012.1	95244..96114	99.196	871	0						
GCA_032332815.1_PDT001830719.1_genomic.fna	Salmonella_enterica	0.5216	297.572 KB	6	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNHPE010000007.1 Salmonella enterica strain PNUSAS366807 SAMN36728522-rid18900813.denovo.07, whole genome shotgun sequence	145366..145803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNHPE010000031.1 Salmonella enterica strain PNUSAS366807 SAMN36728522-rid18900813.guided.20, whole genome shotgun sequence	30325..30762	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHPE010000014.1	33055..33924	99.77	870	0						
GCA_032332895.1_PDT001830706.1_genomic.fna	Salmonella_enterica	0.521	455.614 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHPL010000005.1 Salmonella enterica strain PNUSAS366810 SAMN36728535-rid18902413.denovo.05, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHPL010000030.1 Salmonella enterica strain PNUSAS366810 SAMN36728535-rid18902413.guided.16, whole genome shotgun sequence	36781..37218	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHPL010000019.1 Salmonella enterica strain PNUSAS366810 SAMN36728535-rid18902413.denovo.22, whole genome shotgun sequence	6847..7489	enterobacteriales	IncFII(S)	100	262 / 262	ABNHPL010000016.1 Salmonella enterica strain PNUSAS366810 SAMN36728535-rid18902413.denovo.18, whole genome shotgun sequence	4260..4521																																																avrA	ABNHPL010000001.1	585624..586493	99.54	870	0						
GCA_032332915.1_PDT001830704.1_genomic.fna	Salmonella_enterica	0.5204	406.452 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHPK010000001.1 Salmonella enterica strain PNUSAS366812 SAMN36728531-rid18898603.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHPK010000029.1 Salmonella enterica strain PNUSAS366812 SAMN36728531-rid18898603.guided.24, whole genome shotgun sequence	528..965	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHPK010000018.1 Salmonella enterica strain PNUSAS366812 SAMN36728531-rid18898603.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNHPK010000020.1 Salmonella enterica strain PNUSAS366812 SAMN36728531-rid18898603.denovo.22, whole genome shotgun sequence	3415..3676		enterobacteriales	IncX1	98.4	374 / 374	ABNHPK010000016.1 Salmonella enterica strain PNUSAS366812 SAMN36728531-rid18898603.denovo.17, whole genome shotgun sequence	10523..10896																																									avrA	ABNHPK010000002.1	553297..554166	99.54	870	0						
GCA_032332935.1_PDT001830705.1_genomic.fna	Salmonella_enterica	0.519	266.941 KB	6	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	3	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,fosA7,fosA7	1	parC_p.T57S	3	ColpVC,IncI1-I(Alpha),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNHPM010000001.1 Salmonella enterica strain PNUSAS366809 SAMN36728529-rid18899963.denovo.01, whole genome shotgun sequence	383906..384343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNHPM010000034.1 Salmonella enterica strain PNUSAS366809 SAMN36728529-rid18899963.guided.18, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNHPM010000016.1 Salmonella enterica strain PNUSAS366809 SAMN36728529-rid18899963.denovo.16, whole genome shotgun sequence	65990..67135	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNHPM010000036.1 Salmonella enterica strain PNUSAS366809 SAMN36728529-rid18899963.guided.26, whole genome shotgun sequence	28331..29476	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	fosA7	100	423/423	ABNHPM010000020.1 Salmonella enterica strain PNUSAS366809 SAMN36728529-rid18899963.denovo.21, whole genome shotgun sequence	38358..38780	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNHPM010000038.1 Salmonella enterica strain PNUSAS366809 SAMN36728529-rid18899963.guided.30, whole genome shotgun sequence	9617..10039	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNHPM010000028.1 Salmonella enterica strain PNUSAS366809 SAMN36728529-rid18899963.denovo.33, whole genome shotgun sequence	805..997	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNHPM010000016.1 Salmonella enterica strain PNUSAS366809 SAMN36728529-rid18899963.denovo.16, whole genome shotgun sequence	79429..79570		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNHPM010000036.1 Salmonella enterica strain PNUSAS366809 SAMN36728529-rid18899963.guided.26, whole genome shotgun sequence	15896..16037		enterobacteriales	IncX1	98.93	374 / 374	ABNHPM010000024.1 Salmonella enterica strain PNUSAS366809 SAMN36728529-rid18899963.denovo.27, whole genome shotgun sequence	6868..7241																																		avrA	ABNHPM010000002.1	518395..519264	99.54	870	0						
GCA_032332955.1_PDT001830703.1_genomic.fna	Salmonella_enterica	0.5212	400.369 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHPN010000003.1 Salmonella enterica strain PNUSAS366795 SAMN36728528-rid18899953.denovo.03, whole genome shotgun sequence	162457..162894	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHPN010000021.1 Salmonella enterica strain PNUSAS366795 SAMN36728528-rid18899953.denovo.21, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNHPN010000018.1 Salmonella enterica strain PNUSAS366795 SAMN36728528-rid18899953.denovo.18, whole genome shotgun sequence	4250..4511																																																avrA	ABNHPN010000001.1	584991..585860	99.54	870	0						
GCA_032332975.1_PDT001830701.1_genomic.fna	Salmonella_enterica	0.5224	377.776 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42*,purE_35,sucA_13,thrA_4	81*	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	99.8003992015968	100	hisD_42*	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHPP010000001.1 Salmonella enterica strain PNUSAS366787 SAMN36728526-rid18898593.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHPP010000033.1 Salmonella enterica strain PNUSAS366787 SAMN36728526-rid18898593.guided.23, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032332995.1_PDT001830702.1_genomic.fna	Salmonella_enterica	0.521	378.962 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHPO010000003.1 Salmonella enterica strain PNUSAS366790 SAMN36728532-rid18899943.denovo.03, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHPO010000032.1 Salmonella enterica strain PNUSAS366790 SAMN36728532-rid18899943.guided.17, whole genome shotgun sequence	353..790	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHPO010000021.1 Salmonella enterica strain PNUSAS366790 SAMN36728532-rid18899943.denovo.22, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNHPO010000022.1 Salmonella enterica strain PNUSAS366790 SAMN36728532-rid18899943.denovo.24, whole genome shotgun sequence	3402..3663																																																avrA	ABNHPO010000001.1	585064..585933	99.54	870	0						
GCA_032333015.1_PDT001830699.1_genomic.fna	Salmonella_enterica	0.5215	225.554 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNHPQ010000001.1 Salmonella enterica strain PNUSAS366789 SAMN36728521-rid18897123.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNHPQ010000063.1 Salmonella enterica strain PNUSAS366789 SAMN36728521-rid18897123.guided.35, whole genome shotgun sequence	18823..19260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNHPQ010000024.1 Salmonella enterica strain PNUSAS366789 SAMN36728521-rid18897123.denovo.24, whole genome shotgun sequence	44730..45372	enterobacteriales	IncFII(S)	100	262 / 262	ABNHPQ010000024.1 Salmonella enterica strain PNUSAS366789 SAMN36728521-rid18897123.denovo.24, whole genome shotgun sequence	29384..29645																																																avrA	ABNHPQ010000006.1	94133..95001	100	869	0						
GCA_032333035.1_PDT001830697.1_genomic.fna	Salmonella_enterica	0.5204	210.46 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		4	Col156,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHPU010000002.1 Salmonella enterica strain PNUSAS366801 SAMN36728524-rid18899923.denovo.02, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNHPU010000025.1 Salmonella enterica strain PNUSAS366801 SAMN36728524-rid18899923.denovo.25, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNHPU010000058.1 Salmonella enterica strain PNUSAS366801 SAMN36728524-rid18899923.guided.30, whole genome shotgun sequence	9650..10087	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNHPU010000064.1 Salmonella enterica strain PNUSAS366801 SAMN36728524-rid18899923.guided.58, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNHPU010000039.1 Salmonella enterica strain PNUSAS366801 SAMN36728524-rid18899923.denovo.42, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNHPU010000063.1 Salmonella enterica strain PNUSAS366801 SAMN36728524-rid18899923.guided.55, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNHPU010000039.1 Salmonella enterica strain PNUSAS366801 SAMN36728524-rid18899923.denovo.42, whole genome shotgun sequence	6603..7817	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNHPU010000061.1 Salmonella enterica strain PNUSAS366801 SAMN36728524-rid18899923.guided.43, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNHPU010000062.1 Salmonella enterica strain PNUSAS366801 SAMN36728524-rid18899923.guided.49, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNHPU010000039.1 Salmonella enterica strain PNUSAS366801 SAMN36728524-rid18899923.denovo.42, whole genome shotgun sequence	4491..5666	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNHPU010000061.1 Salmonella enterica strain PNUSAS366801 SAMN36728524-rid18899923.guided.43, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	Col156	92.86	154 / 154	ABNHPU010000044.1 Salmonella enterica strain PNUSAS366801 SAMN36728524-rid18899923.denovo.48, whole genome shotgun sequence	896..1049	enterobacteriales	IncFIB(S)	100	643 / 643	ABNHPU010000024.1 Salmonella enterica strain PNUSAS366801 SAMN36728524-rid18899923.denovo.24, whole genome shotgun sequence	36050..36692		enterobacteriales	IncFII(S)	100	262 / 262	ABNHPU010000024.1 Salmonella enterica strain PNUSAS366801 SAMN36728524-rid18899923.denovo.24, whole genome shotgun sequence	51777..52038		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNHPU010000018.1 Salmonella enterica strain PNUSAS366801 SAMN36728524-rid18899923.denovo.18, whole genome shotgun sequence	72376..72517																																		avrA	ABNHPU010000001.1	506044..506913	99.885	870	0						
GCA_032333055.1_PDT001830698.1_genomic.fna	Salmonella_enterica	0.5196	152.391 KB	12	aroC_41,dnaN_4,hemD_23,hisD_14,purE_16,sucA_19,thrA_18	74	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_4	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_19	thrA	100	100	thrA_18	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHPT010000018.1 Salmonella enterica strain PNUSAS366799 SAMN36728511-rid18900383.denovo.18, whole genome shotgun sequence	78350..78787	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHPT010000071.1 Salmonella enterica strain PNUSAS366799 SAMN36728511-rid18900383.guided.45, whole genome shotgun sequence	3962..4399	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHPT010000003.1	95810..96678	99.425	870	0						
GCA_032333075.1_PDT001830695.1_genomic.fna	Salmonella_enterica	0.5227	338.141 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHPS010000001.1 Salmonella enterica strain PNUSAS366804 SAMN36728523-rid18899913.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHPS010000045.1 Salmonella enterica strain PNUSAS366804 SAMN36728523-rid18899913.guided.19, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032333095.1_PDT001830696.1_genomic.fna	Salmonella_enterica	0.5223	410.978 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNHPR010000001.1 Salmonella enterica strain PNUSAS366793 SAMN36728514-rid18898583.denovo.01, whole genome shotgun sequence	482150..482587	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNHPR010000037.1 Salmonella enterica strain PNUSAS366793 SAMN36728514-rid18898583.guided.25, whole genome shotgun sequence	2163..2600	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHPR010000003.1	128611..129480	99.77	870	0						
GCA_032333115.1_PDT001830694.1_genomic.fna	Salmonella_enterica	0.5207	256.117 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHPV010000001.1 Salmonella enterica strain PNUSAS366811 SAMN36728518-rid18898573.denovo.01, whole genome shotgun sequence	458966..459403	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHPV010000041.1 Salmonella enterica strain PNUSAS366811 SAMN36728518-rid18898573.denovo.45, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNHPV010000041.1 Salmonella enterica strain PNUSAS366811 SAMN36728518-rid18898573.denovo.45, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNHPV010000076.1 Salmonella enterica strain PNUSAS366811 SAMN36728518-rid18898573.guided.36, whole genome shotgun sequence	13205..13642	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHPV010000079.1 Salmonella enterica strain PNUSAS366811 SAMN36728518-rid18898573.guided.48, whole genome shotgun sequence	2010..2846	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNHPV010000079.1 Salmonella enterica strain PNUSAS366811 SAMN36728518-rid18898573.guided.48, whole genome shotgun sequence	1207..2010	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNHPV010000050.1 Salmonella enterica strain PNUSAS366811 SAMN36728518-rid18898573.denovo.56, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNHPV010000080.1 Salmonella enterica strain PNUSAS366811 SAMN36728518-rid18898573.guided.55, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNHPV010000041.1 Salmonella enterica strain PNUSAS366811 SAMN36728518-rid18898573.denovo.45, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNHPV010000079.1 Salmonella enterica strain PNUSAS366811 SAMN36728518-rid18898573.guided.48, whole genome shotgun sequence	331..1146	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNHPV010000034.1 Salmonella enterica strain PNUSAS366811 SAMN36728518-rid18898573.denovo.35, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNHPV010000078.1 Salmonella enterica strain PNUSAS366811 SAMN36728518-rid18898573.guided.41, whole genome shotgun sequence	2862..4067	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncY	99.74	765 / 765	ABNHPV010000014.1 Salmonella enterica strain PNUSAS366811 SAMN36728518-rid18898573.denovo.14, whole genome shotgun sequence	65737..66501																																																						avrA	ABNHPV010000002.1	539520..540389	99.885	870	0						
GCA_032333135.1_PDT001830693.1_genomic.fna	Salmonella_enterica	0.5219	179.622 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNHPW010000002.1 Salmonella enterica strain PNUSAS366813 SAMN36728517-rid18899903.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNHPW010000064.1 Salmonella enterica strain PNUSAS366813 SAMN36728517-rid18899903.guided.38, whole genome shotgun sequence	8181..8618	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNHPW010000028.1 Salmonella enterica strain PNUSAS366813 SAMN36728517-rid18899903.denovo.28, whole genome shotgun sequence	44714..45356	enterobacteriales	IncFII(S)	100	262 / 262	ABNHPW010000028.1 Salmonella enterica strain PNUSAS366813 SAMN36728517-rid18899903.denovo.28, whole genome shotgun sequence	29368..29629																																																avrA	ABNHPW010000001.1	446614..447482	100	869	0						
GCA_032333155.1_PDT001830690.1_genomic.fna	Salmonella_enterica	0.5207	192.333 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHPY010000001.1 Salmonella enterica strain PNUSAS366798 SAMN36728515-rid18899883.denovo.01, whole genome shotgun sequence	145293..145730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHPY010000060.1 Salmonella enterica strain PNUSAS366798 SAMN36728515-rid18899883.guided.37, whole genome shotgun sequence	6452..6889	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNHPY010000018.1 Salmonella enterica strain PNUSAS366798 SAMN36728515-rid18899883.denovo.18, whole genome shotgun sequence	72156..72297																																																						avrA	ABNHPY010000003.1	98459..99328	99.885	870	0						
GCA_032333175.1_PDT001830692.1_genomic.fna	Salmonella_enterica	0.5211	489.747 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col(pHAD28),ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHPX010000001.1 Salmonella enterica strain PNUSAS366803 SAMN36728520-rid18899893.denovo.01, whole genome shotgun sequence	293262..293699	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHPX010000024.1 Salmonella enterica strain PNUSAS366803 SAMN36728520-rid18899893.guided.20, whole genome shotgun sequence	1991..2428	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	91.15	113 / 131	ABNHPX010000021.1 Salmonella enterica strain PNUSAS366803 SAMN36728520-rid18899893.denovo.24, whole genome shotgun sequence	1410..1522	enterobacteriales	ColpVC	98.96	193 / 193	ABNHPX010000022.1 Salmonella enterica strain PNUSAS366803 SAMN36728520-rid18899893.denovo.25, whole genome shotgun sequence	805..997		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHPX010000016.1 Salmonella enterica strain PNUSAS366803 SAMN36728520-rid18899893.denovo.16, whole genome shotgun sequence	9588..10230		enterobacteriales	IncFII(S)	100	262 / 262	ABNHPX010000016.1 Salmonella enterica strain PNUSAS366803 SAMN36728520-rid18899893.denovo.16, whole genome shotgun sequence	54222..54483																																		avrA	ABNHPX010000002.1	552864..553733	99.54	870	0						
GCA_032334295.1_PDT001830616.1_genomic.fna	Salmonella_enterica	0.5206	234.982 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHRU010000001.1 Salmonella enterica strain PNUSAS367012 SAMN36726721-rid18899643.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHRU010000043.1 Salmonella enterica strain PNUSAS367012 SAMN36726721-rid18899643.guided.24, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNHRU010000020.1 Salmonella enterica strain PNUSAS367012 SAMN36726721-rid18899643.denovo.21, whole genome shotgun sequence	5912..6445																																																						avrA	ABNHRU010000011.1	153889..154758	99.425	870	0						
GCA_032334315.1_PDT001830615.1_genomic.fna	Salmonella_enterica	0.521	351.333 KB	6	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNHRV010000001.1 Salmonella enterica strain PNUSAS367009 SAMN36726724-rid18899633.denovo.01, whole genome shotgun sequence	136575..137012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNHRV010000029.1 Salmonella enterica strain PNUSAS367009 SAMN36726724-rid18899633.guided.19, whole genome shotgun sequence	36359..36796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHRV010000007.1	146624..147492	99.425	870	0						
GCA_032334335.1_PDT001830614.1_genomic.fna	Salmonella_enterica	0.5218	446.325 KB	4	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHRW010000009.1 Salmonella enterica strain PNUSAS367015 SAMN36726722-rid18898233.denovo.09, whole genome shotgun sequence	105258..105695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNHRW010000034.1 Salmonella enterica strain PNUSAS367015 SAMN36726722-rid18898233.guided.26, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032334395.1_PDT001830613.1_genomic.fna	Salmonella_enterica	0.5214	532.363 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNHRX010000010.1 Salmonella enterica strain PNUSAS367013 SAMN36726727-rid18900313.denovo.10, whole genome shotgun sequence	70822..71259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNHRX010000027.1 Salmonella enterica strain PNUSAS367013 SAMN36726727-rid18900313.guided.17, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHRX010000002.1	138324..139193	98.966	870	0						
GCA_032334415.1_PDT001830612.1_genomic.fna	Salmonella_enterica	0.5214	251.428 KB	7	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_19,thrA_1	679	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHRY010000011.1 Salmonella enterica strain PNUSAS367004 SAMN36726723-rid18896993.denovo.11, whole genome shotgun sequence	37880..38317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHRY010000039.1 Salmonella enterica strain PNUSAS367004 SAMN36726723-rid18896993.guided.27, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHRY010000012.1	39613..40478	98.966	870	0						
GCA_032334435.1_PDT001830611.1_genomic.fna	Salmonella_enterica	0.5179	150.753 KB	10	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNHSA010000011.1 Salmonella enterica strain PNUSAS367011 SAMN36726713-rid18900303.denovo.11, whole genome shotgun sequence	43446..43883	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNHSA010000090.1 Salmonella enterica strain PNUSAS367011 SAMN36726713-rid18900303.guided.51, whole genome shotgun sequence	3426..3863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNHSA010000001.1	140180..141049	99.31	870	0						
GCA_032334495.1_PDT001830610.1_genomic.fna	Salmonella_enterica	0.5218	207.446 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHRZ010000002.1 Salmonella enterica strain PNUSAS367010 SAMN36726712-rid18899623.denovo.02, whole genome shotgun sequence	145427..145864	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHRZ010000039.1 Salmonella enterica strain PNUSAS367010 SAMN36726712-rid18899623.guided.24, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNHRZ010000003.1	218216..219084	99.77	870	0						
GCA_032334555.1_PDT001830606.1_genomic.fna	Salmonella_enterica	0.5214	207.445 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHSE010000002.1 Salmonella enterica strain PNUSAS367006 SAMN36726716-rid18899603.denovo.02, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHSE010000039.1 Salmonella enterica strain PNUSAS367006 SAMN36726716-rid18899603.guided.23, whole genome shotgun sequence	21774..22211	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNHSE010000006.1	174491..175359	99.77	870	0						
GCA_032334635.1_PDT001830609.1_genomic.fna	Salmonella_enterica	0.5201	400.804 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHSB010000001.1 Salmonella enterica strain PNUSAS367014 SAMN36726715-rid18898223.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHSB010000022.1 Salmonella enterica strain PNUSAS367014 SAMN36726715-rid18898223.guided.15, whole genome shotgun sequence	17210..17647	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABNHSB010000015.1 Salmonella enterica strain PNUSAS367014 SAMN36726715-rid18898223.denovo.17, whole genome shotgun sequence	32011..32384																																																						avrA	ABNHSB010000007.1	176576..177445	99.54	870	0						
GCA_032334675.1_PDT001830605.1_genomic.fna	Salmonella_enterica	0.5202	312.685 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	ColRNAI,IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHSF010000006.1 Salmonella enterica strain PNUSAS367002 SAMN36726725-rid18899593.denovo.06, whole genome shotgun sequence	18984..19421	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHSF010000043.1 Salmonella enterica strain PNUSAS367002 SAMN36726725-rid18899593.guided.32, whole genome shotgun sequence	3531..3968	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABNHSF010000030.1 Salmonella enterica strain PNUSAS367002 SAMN36726725-rid18899593.denovo.33, whole genome shotgun sequence	4022..4152	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHSF010000027.1 Salmonella enterica strain PNUSAS367002 SAMN36726725-rid18899593.denovo.29, whole genome shotgun sequence	6142..6784		enterobacteriales	IncFII(S)	100	262 / 262	ABNHSF010000029.1 Salmonella enterica strain PNUSAS367002 SAMN36726725-rid18899593.denovo.31, whole genome shotgun sequence	3405..3666		enterobacteriales	IncX1	98.66	374 / 374	ABNHSF010000022.1 Salmonella enterica strain PNUSAS367002 SAMN36726725-rid18899593.denovo.23, whole genome shotgun sequence	30551..30924																																		avrA	ABNHSF010000001.1	505838..506707	99.54	870	0						
GCA_032334705.1_PDT001830607.1_genomic.fna	Salmonella_enterica	0.5204	297.022 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHSD010000011.1 Salmonella enterica strain PNUSAS367005 SAMN36726720-rid18898213.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHSD010000045.1 Salmonella enterica strain PNUSAS367005 SAMN36726720-rid18898213.guided.19, whole genome shotgun sequence	42435..42872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNHSD010000020.1 Salmonella enterica strain PNUSAS367005 SAMN36726720-rid18898213.denovo.21, whole genome shotgun sequence	34957..35490																																																						avrA	ABNHSD010000003.1	39594..40460	98.966	870	0						
GCA_032334735.1_PDT001830608.1_genomic.fna	Salmonella_enterica	0.5205	261.589 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHSC010000001.1 Salmonella enterica strain PNUSAS367016 SAMN36726719-rid18899613.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHSC010000039.1 Salmonella enterica strain PNUSAS367016 SAMN36726719-rid18899613.guided.31, whole genome shotgun sequence	16265..16702	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNHSC010000021.1 Salmonella enterica strain PNUSAS367016 SAMN36726719-rid18899613.denovo.21, whole genome shotgun sequence	6052..6585																																																						avrA	ABNHSC010000011.1	153866..154735	99.425	870	0						
GCA_032334755.1_PDT001830604.1_genomic.fna	Salmonella_enterica	0.5206	393.498 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNHSG010000001.1 Salmonella enterica strain PNUSAS367007 SAMN36726717-rid18898203.denovo.01, whole genome shotgun sequence	482129..482566	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNHSG010000032.1 Salmonella enterica strain PNUSAS367007 SAMN36726717-rid18898203.guided.17, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHSG010000002.1	144854..145723	99.31	870	0						
GCA_032334815.1_PDT001830602.1_genomic.fna	Salmonella_enterica	0.5209	337.201 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNHSH010000001.1 Salmonella enterica strain PNUSAS367017 SAMN36726714-rid18896983.denovo.01, whole genome shotgun sequence	477714..478151	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNHSH010000031.1 Salmonella enterica strain PNUSAS367017 SAMN36726714-rid18896983.guided.18, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHSH010000002.1	144854..145723	99.31	870	0						
GCA_032334855.1_PDT001830603.1_genomic.fna	Salmonella_enterica	0.5197	308.109 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHSI010000001.1 Salmonella enterica strain PNUSAS367003 SAMN36726726-rid18900293.denovo.01, whole genome shotgun sequence	135639..136076	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHSI010000037.1 Salmonella enterica strain PNUSAS367003 SAMN36726726-rid18900293.guided.15, whole genome shotgun sequence	44275..44712	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNHSI010000009.1 Salmonella enterica strain PNUSAS367003 SAMN36726726-rid18900293.denovo.09, whole genome shotgun sequence	27818..28240	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNHSI010000039.1 Salmonella enterica strain PNUSAS367003 SAMN36726726-rid18900293.guided.31, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHSI010000002.1	122302..123171	99.195	870	0						
GCA_032334915.1_PDT001830601.1_genomic.fna	Salmonella_enterica	0.5202	335.215 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI(Gamma)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNHSJ010000001.1 Salmonella enterica strain PNUSAS367008 SAMN36726718-rid18900283.denovo.01, whole genome shotgun sequence	478281..478718	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNHSJ010000035.1 Salmonella enterica strain PNUSAS367008 SAMN36726718-rid18900283.guided.23, whole genome shotgun sequence	10688..11125	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI(Gamma)	97.81	137 / 141	ABNHSJ010000015.1 Salmonella enterica strain PNUSAS367008 SAMN36726718-rid18900283.denovo.15, whole genome shotgun sequence	71395..71531																																																						avrA	ABNHSJ010000002.1	144854..145723	99.31	870	0						
GCA_032337155.1_ASM3233715v1_genomic.fna	Salmonella_enterica	0.5189	394.55 KB	5	aroC_2,dnaN_59,hemD_23,hisD_64,purE_38,sucA_19,thrA_12	1499	8:r:1,5	15	aph(3')-IIa,aadA1,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,cmlA1,OqxB,OqxA,sul3,sul1,tet(M),tet(A),dfrA12,bleO	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_2	dnaN	100	100	dnaN_59	hemD	100	100	hemD_23	hisD	100	100	hisD_64	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aph(3')-IIa	100	795/795	JAVXYT010000055.1 Salmonella enterica strain D57 contig00031, whole genome shotgun sequence	347..1141	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	aadA1	100	792/792	JAVXYT010000058.1 Salmonella enterica strain D57 contig00028, whole genome shotgun sequence	1660..2451	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	JAVXYT010000072.1 Salmonella enterica strain D57 contig00014, whole genome shotgun sequence	7937..8773	Streptomycin	M28829	aph(3'')-Ib	100	803/804	JAVXYT010000072.1 Salmonella enterica strain D57 contig00014, whole genome shotgun sequence	7135..7937	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	JAVXYT010000072.1 Salmonella enterica strain D57 contig00014, whole genome shotgun sequence	7134..7937	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	JAVXYT010000072.1 Salmonella enterica strain D57 contig00014, whole genome shotgun sequence	7134..7937	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	JAVXYT010000072.1 Salmonella enterica strain D57 contig00014, whole genome shotgun sequence	7134..7937	Streptomycin	AF321550	aac(6')-Iaa	97.72	438/438	JAVXYT010000081.1 Salmonella enterica strain D57 contig00005, whole genome shotgun sequence	145336..145773	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	JAVXYT010000062.1 Salmonella enterica strain D57 contig00024, whole genome shotgun sequence	1095..1955	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	JAVXYT010000058.1 Salmonella enterica strain D57 contig00028, whole genome shotgun sequence	308..1567	Chloramphenicol	M64556	OqxB	100	3153/3153	JAVXYT010000059.1 Salmonella enterica strain D57 contig00027, whole genome shotgun sequence	702..3854	Chloramphenicol, Nalidixic acid, Ciprofloxacin, Trimethoprim	EU370913	OqxA	99.91	1176/1176	JAVXYT010000059.1 Salmonella enterica strain D57 contig00027, whole genome shotgun sequence	3878..5053	Chloramphenicol, Nalidixic acid, Ciprofloxacin, Trimethoprim	EU370913	sul3	100	792/792	JAVXYT010000056.1 Salmonella enterica strain D57 contig00030, whole genome shotgun sequence	177..968	Sulfamethoxazole	AJ459418	sul1	100	840/840	JAVXYT010000057.1 Salmonella enterica strain D57 contig00029, whole genome shotgun sequence	551..1390	Sulfamethoxazole	U12338	tet(M)	99.9	1920/1920	JAVXYT010000062.1 Salmonella enterica strain D57 contig00024, whole genome shotgun sequence	4051..5970	Doxycycline, Tetracycline, Minocycline	X75073	tet(A)	99.92	1200/1200	JAVXYT010000066.1 Salmonella enterica strain D57 contig00020, whole genome shotgun sequence	48714..49913	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	JAVXYT010000050.1 Salmonella enterica strain D57 contig00036, whole genome shotgun sequence	519..1016	Trimethoprim	AM040708	bleO	100	362/399	JAVXYT010000060.1 Salmonella enterica strain D57 contig00026, whole genome shotgun sequence	101..462	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	100	327 / 327	JAVXYT010000061.1 Salmonella enterica strain D57 contig00025, whole genome shotgun sequence	6939..7265	enterobacteriales	IncHI2A	99.52	630 / 630	JAVXYT010000072.1 Salmonella enterica strain D57 contig00014, whole genome shotgun sequence	94341..94970																																																avrA	JAVXYT010000085.1	645675..646544	99.31	870	0						
GCA_032337175.1_ASM3233717v1_genomic.fna	Salmonella_enterica	0.5203	738.125 KB	3	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	8	aadA2,aadA1,aac(6')-Iaa,blaTEM-1B,cml,sul3,tet(A),dfrA12	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aadA2	100	792/792	JAVXYS010000064.1 Salmonella enterica strain NK137.1 contig00024, whole genome shotgun sequence	3723..4514	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	JAVXYS010000065.1 Salmonella enterica strain NK137.1 contig00023, whole genome shotgun sequence	3701..4492	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.03	438/438	JAVXYS010000087.1 Salmonella enterica strain NK137.1 contig00001, whole genome shotgun sequence	810047..810484	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	JAVXYS010000065.1 Salmonella enterica strain NK137.1 contig00023, whole genome shotgun sequence	1437..2297	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	JAVXYS010000065.1 Salmonella enterica strain NK137.1 contig00023, whole genome shotgun sequence	2761..3682	Chloramphenicol	M22614	sul3	100	792/792	JAVXYS010000065.1 Salmonella enterica strain NK137.1 contig00023, whole genome shotgun sequence	6174..6965	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	JAVXYS010000073.1 Salmonella enterica strain NK137.1 contig00015, whole genome shotgun sequence	77553..78752	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	JAVXYS010000064.1 Salmonella enterica strain NK137.1 contig00024, whole genome shotgun sequence	2818..3315	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	JAVXYS010000063.1 Salmonella enterica strain NK137.1 contig00025, whole genome shotgun sequence	4264..4394																																																						avrA	JAVXYS010000086.1	567617..568486	99.195	870	0						
GCA_032337195.1_ASM3233719v1_genomic.fna	Salmonella_enterica	0.5215	584.751 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	8	aadA2,aadA1,aac(6')-Iaa,blaTEM-1B,cml,sul3,tet(A),dfrA12	1	parC_p.T57S	2	ColpVC,IncFIB(K)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aadA2	100	792/792	JAVXYU010000037.1 Salmonella enterica strain D8 contig00023, whole genome shotgun sequence	3711..4502	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	JAVXYU010000038.1 Salmonella enterica strain D8 contig00022, whole genome shotgun sequence	3348..4139	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	99.09	438/438	JAVXYU010000058.1 Salmonella enterica strain D8 contig00002, whole genome shotgun sequence	650422..650859	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	JAVXYU010000038.1 Salmonella enterica strain D8 contig00022, whole genome shotgun sequence	1084..1944	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	JAVXYU010000038.1 Salmonella enterica strain D8 contig00022, whole genome shotgun sequence	2408..3329	Chloramphenicol	M22614	sul3	100	792/792	JAVXYU010000038.1 Salmonella enterica strain D8 contig00022, whole genome shotgun sequence	5821..6612	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	JAVXYU010000039.1 Salmonella enterica strain D8 contig00021, whole genome shotgun sequence	5911..7110	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	JAVXYU010000037.1 Salmonella enterica strain D8 contig00023, whole genome shotgun sequence	2806..3303	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	JAVXYU010000032.1 Salmonella enterica strain D8 contig00028, whole genome shotgun sequence	651..843	enterobacteriales	IncFIB(K)	98.93	560 / 560	JAVXYU010000042.1 Salmonella enterica strain D8 contig00018, whole genome shotgun sequence	34989..35548																																																avrA	JAVXYU010000057.1	544303..545172	99.54	870	0						
GCA_032337215.1_ASM3233721v1_genomic.fna	Salmonella_enterica	0.5215	584.987 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	8	aadA2,aadA1,aac(6')-Iaa,blaTEM-1B,cml,sul3,tet(A),dfrA12	1	parC_p.T57S	2	ColpVC,IncFIB(K)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aadA2	100	792/792	JAVXYW010000032.1 Salmonella enterica strain A4 contig00023, whole genome shotgun sequence	1257..2048	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	JAVXYW010000033.1 Salmonella enterica strain A4 contig00022, whole genome shotgun sequence	3689..4480	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	99.09	438/438	JAVXYW010000053.1 Salmonella enterica strain A4 contig00002, whole genome shotgun sequence	243575..244012	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	JAVXYW010000033.1 Salmonella enterica strain A4 contig00022, whole genome shotgun sequence	1425..2285	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	JAVXYW010000033.1 Salmonella enterica strain A4 contig00022, whole genome shotgun sequence	2749..3670	Chloramphenicol	M22614	sul3	100	792/792	JAVXYW010000033.1 Salmonella enterica strain A4 contig00022, whole genome shotgun sequence	6162..6953	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	JAVXYW010000034.1 Salmonella enterica strain A4 contig00021, whole genome shotgun sequence	3629..4828	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	JAVXYW010000032.1 Salmonella enterica strain A4 contig00023, whole genome shotgun sequence	2456..2953	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	JAVXYW010000028.1 Salmonella enterica strain A4 contig00027, whole genome shotgun sequence	1323..1515	enterobacteriales	IncFIB(K)	98.93	560 / 560	JAVXYW010000037.1 Salmonella enterica strain A4 contig00018, whole genome shotgun sequence	34990..35549																																																avrA	JAVXYW010000052.1	544539..545408	99.54	870	0						
GCA_032337255.1_ASM3233725v1_genomic.fna	Salmonella_enterica	0.5217	392.583 KB	3	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	12	aadA2b,aph(3')-Ia,aph(4)-Ia,aac(3)-IV,aadA1,aac(6')-Iaa,blaTEM-1B,cmlA1,sul1,sul3,tet(A),dfrA12	2	gyrA_p.S83F,parC_p.T57S	3	Col156,Col440I,IncFIB(K)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aadA2b	99.87	780/780	JAVXYR010000023.1 Salmonella enterica strain SA012 contig00040, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	aph(3')-Ia	100	816/816	JAVXYR010000029.1 Salmonella enterica strain SA012 contig00034, whole genome shotgun sequence	228..1043	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	V00359	aph(4)-Ia	100	1026/1026	JAVXYR010000039.1 Salmonella enterica strain SA012 contig00024, whole genome shotgun sequence	4119..5144	Hygromycin	V01499	aac(3)-IV	100	777/777	JAVXYR010000039.1 Salmonella enterica strain SA012 contig00024, whole genome shotgun sequence	5373..6149	Gentamicin, Tobramycin	DQ241380	aadA1	100	792/792	JAVXYR010000040.1 Salmonella enterica strain SA012 contig00023, whole genome shotgun sequence	4585..5376	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.95	438/438	JAVXYR010000062.1 Salmonella enterica strain SA012 contig00001, whole genome shotgun sequence	676762..677199	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	JAVXYR010000037.1 Salmonella enterica strain SA012 contig00026, whole genome shotgun sequence	688..1548	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	JAVXYR010000040.1 Salmonella enterica strain SA012 contig00023, whole genome shotgun sequence	5469..6728	Chloramphenicol	M64556	sul1	100	840/840	JAVXYR010000033.1 Salmonella enterica strain SA012 contig00030, whole genome shotgun sequence	2118..2957	Sulfamethoxazole	U12338	sul3	100	792/792	JAVXYR010000040.1 Salmonella enterica strain SA012 contig00023, whole genome shotgun sequence	2112..2903	Sulfamethoxazole	AJ459418	tet(A)	100	1200/1200	JAVXYR010000044.1 Salmonella enterica strain SA012 contig00019, whole genome shotgun sequence	17343..18542	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	JAVXYR010000027.1 Salmonella enterica strain SA012 contig00036, whole genome shotgun sequence	98..595	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col156	94.81	154 / 154	JAVXYR010000036.1 Salmonella enterica strain SA012 contig00027, whole genome shotgun sequence	1159..1312	enterobacteriales	Col440I	93.86	114 / 114	JAVXYR010000034.1 Salmonella enterica strain SA012 contig00029, whole genome shotgun sequence	694..807		enterobacteriales	IncFIB(K)	98.93	560 / 560	JAVXYR010000046.1 Salmonella enterica strain SA012 contig00017, whole genome shotgun sequence	33151..33710																																									avrA	JAVXYR010000059.1	39578..40447	98.966	870	0						
GCA_032337275.1_ASM3233727v1_genomic.fna	Salmonella_enterica	0.5215	584.751 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	8	aadA2,aadA1,aac(6')-Iaa,blaTEM-1B,cml,sul3,tet(A),dfrA12	1	parC_p.T57S	2	ColpVC,IncFIB(K)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aadA2	100	792/792	JAVXYV010000038.1 Salmonella enterica strain C76 contig00023, whole genome shotgun sequence	3712..4503	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	JAVXYV010000039.1 Salmonella enterica strain C76 contig00022, whole genome shotgun sequence	3348..4139	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	99.09	438/438	JAVXYV010000060.1 Salmonella enterica strain C76 contig00001, whole genome shotgun sequence	650422..650859	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	JAVXYV010000039.1 Salmonella enterica strain C76 contig00022, whole genome shotgun sequence	1084..1944	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	JAVXYV010000039.1 Salmonella enterica strain C76 contig00022, whole genome shotgun sequence	2408..3329	Chloramphenicol	M22614	sul3	100	792/792	JAVXYV010000039.1 Salmonella enterica strain C76 contig00022, whole genome shotgun sequence	5821..6612	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	JAVXYV010000040.1 Salmonella enterica strain C76 contig00021, whole genome shotgun sequence	5911..7110	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	JAVXYV010000038.1 Salmonella enterica strain C76 contig00023, whole genome shotgun sequence	2807..3304	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	JAVXYV010000032.1 Salmonella enterica strain C76 contig00029, whole genome shotgun sequence	1170..1362	enterobacteriales	IncFIB(K)	98.93	560 / 560	JAVXYV010000043.1 Salmonella enterica strain C76 contig00018, whole genome shotgun sequence	32176..32735																																																avrA	JAVXYV010000058.1	544303..545172	99.54	870	0						
GCA_032337285.1_ASM3233728v1_genomic.fna	Salmonella_enterica	0.518	777.915 KB	3	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	11	aadA2,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,sul3,sul1,tet(A),tet(M),dfrA12,bleO	1	parC_p.T57S	2	IncHI2A,IncY	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aadA2	100	792/792	JAVXYQ010000055.1 Salmonella enterica strain SA016 contig00031, whole genome shotgun sequence	4909..5700	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	837/837	JAVXYQ010000069.1 Salmonella enterica strain SA016 contig00017, whole genome shotgun sequence	45326..46162	Streptomycin	M28829	aph(3'')-Ib	100	803/804	JAVXYQ010000069.1 Salmonella enterica strain SA016 contig00017, whole genome shotgun sequence	46162..46964	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	JAVXYQ010000069.1 Salmonella enterica strain SA016 contig00017, whole genome shotgun sequence	46162..46965	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	JAVXYQ010000069.1 Salmonella enterica strain SA016 contig00017, whole genome shotgun sequence	46162..46965	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	JAVXYQ010000069.1 Salmonella enterica strain SA016 contig00017, whole genome shotgun sequence	46162..46965	Streptomycin	AF321550	aac(6')-Iaa	98.63	438/438	JAVXYQ010000084.1 Salmonella enterica strain SA016 contig00002, whole genome shotgun sequence	710825..711262	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	JAVXYQ010000057.1 Salmonella enterica strain SA016 contig00029, whole genome shotgun sequence	7986..8846	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul3	100	792/792	JAVXYQ010000045.1 Salmonella enterica strain SA016 contig00041, whole genome shotgun sequence	176..967	Sulfamethoxazole	AJ459418	sul1	100	840/840	JAVXYQ010000055.1 Salmonella enterica strain SA016 contig00031, whole genome shotgun sequence	6205..7044	Sulfamethoxazole	U12338	tet(A)	99.92	1200/1200	JAVXYQ010000047.1 Salmonella enterica strain SA016 contig00039, whole genome shotgun sequence	1552..2751	Doxycycline, Tetracycline	AJ517790	tet(M)	99.9	1920/1920	JAVXYQ010000057.1 Salmonella enterica strain SA016 contig00029, whole genome shotgun sequence	3971..5890	Doxycycline, Tetracycline, Minocycline	X75073	dfrA12	100	498/498	JAVXYQ010000055.1 Salmonella enterica strain SA016 contig00031, whole genome shotgun sequence	4004..4501	Trimethoprim	AM040708	bleO	100	392/399	JAVXYQ010000048.1 Salmonella enterica strain SA016 contig00038, whole genome shotgun sequence	238..629	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2A	99.52	630 / 630	JAVXYQ010000054.1 Salmonella enterica strain SA016 contig00032, whole genome shotgun sequence	6371..7000	enterobacteriales	IncY	99.48	765 / 765	JAVXYQ010000061.1 Salmonella enterica strain SA016 contig00025, whole genome shotgun sequence	14980..15744																																																avrA	JAVXYQ010000083.1	39727..40593	99.08	870	0						
GCA_032337315.1_ASM3233731v1_genomic.fna	Salmonella_enterica	0.5215	584.751 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	8	aadA2,aadA1,aac(6')-Iaa,blaTEM-1B,cml,sul3,tet(A),dfrA12	1	parC_p.T57S	2	ColpVC,IncFIB(K)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aadA2	100	792/792	JAVXYX010000032.1 Salmonella enterica strain A2 contig00023, whole genome shotgun sequence	3711..4502	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	JAVXYX010000033.1 Salmonella enterica strain A2 contig00022, whole genome shotgun sequence	4584..5375	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	99.09	438/438	JAVXYX010000053.1 Salmonella enterica strain A2 contig00002, whole genome shotgun sequence	650422..650859	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	JAVXYX010000033.1 Salmonella enterica strain A2 contig00022, whole genome shotgun sequence	6779..7639	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	JAVXYX010000033.1 Salmonella enterica strain A2 contig00022, whole genome shotgun sequence	5394..6315	Chloramphenicol	M22614	sul3	100	792/792	JAVXYX010000033.1 Salmonella enterica strain A2 contig00022, whole genome shotgun sequence	2111..2902	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	JAVXYX010000034.1 Salmonella enterica strain A2 contig00021, whole genome shotgun sequence	5911..7110	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	JAVXYX010000032.1 Salmonella enterica strain A2 contig00023, whole genome shotgun sequence	2806..3303	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	JAVXYX010000028.1 Salmonella enterica strain A2 contig00027, whole genome shotgun sequence	1600..1792	enterobacteriales	IncFIB(K)	98.93	560 / 560	JAVXYX010000037.1 Salmonella enterica strain A2 contig00018, whole genome shotgun sequence	34990..35549																																																avrA	JAVXYX010000052.1	544303..545172	99.54	870	0						
GCA_032337335.1_ASM3233733v1_genomic.fna	Salmonella_enterica	0.5218	292.16 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	8	aph(4)-Ia,aac(3)-IV,aadA2,aac(6')-Iaa,blaTEM-1B,sul1,tet(A),dfrA12	2	gyrA_p.S83F,parC_p.T57S	3	Col(pHAD28),Col440I,IncFIB(K)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aph(4)-Ia	100	1026/1026	JAVXYP010000029.1 Salmonella enterica strain SA040 contig00023, whole genome shotgun sequence	1144..2169	Hygromycin	V01499	aac(3)-IV	100	777/777	JAVXYP010000029.1 Salmonella enterica strain SA040 contig00023, whole genome shotgun sequence	139..915	Gentamicin, Tobramycin	DQ241380	aadA2	100	792/792	JAVXYP010000033.1 Salmonella enterica strain SA040 contig00019, whole genome shotgun sequence	3462..4253	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.95	438/438	JAVXYP010000051.1 Salmonella enterica strain SA040 contig00001, whole genome shotgun sequence	467018..467455	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	JAVXYP010000030.1 Salmonella enterica strain SA040 contig00022, whole genome shotgun sequence	1083..1943	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	JAVXYP010000033.1 Salmonella enterica strain SA040 contig00019, whole genome shotgun sequence	2118..2957	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	JAVXYP010000033.1 Salmonella enterica strain SA040 contig00019, whole genome shotgun sequence	12255..13454	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	JAVXYP010000033.1 Salmonella enterica strain SA040 contig00019, whole genome shotgun sequence	4661..5158	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																																																																gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	JAVXYP010000028.1 Salmonella enterica strain SA040 contig00024, whole genome shotgun sequence	3093..3223	enterobacteriales	Col440I	92.11	114 / 114	JAVXYP010000027.1 Salmonella enterica strain SA040 contig00025, whole genome shotgun sequence	3594..3707		enterobacteriales	IncFIB(K)	98.93	560 / 560	JAVXYP010000031.1 Salmonella enterica strain SA040 contig00021, whole genome shotgun sequence	5120..5679																																									avrA	JAVXYP010000046.1	54435..55304	98.966	870	0						
GCA_032337375.1_ASM3233737v1_genomic.fna	Salmonella_enterica	0.5219	390.29 KB	3	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	8	aph(4)-Ia,aac(3)-IV,aadA2,aac(6')-Iaa,blaTEM-1B,sul1,tet(A),dfrA12	2	gyrA_p.S83F,parC_p.T57S	2	Col156,IncFIB(K)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aph(4)-Ia	100	1026/1026	JAVXYN010000028.1 Salmonella enterica strain SA048 contig00021, whole genome shotgun sequence	4119..5144	Hygromycin	V01499	aac(3)-IV	100	777/777	JAVXYN010000028.1 Salmonella enterica strain SA048 contig00021, whole genome shotgun sequence	5373..6149	Gentamicin, Tobramycin	DQ241380	aadA2	100	792/792	JAVXYN010000031.1 Salmonella enterica strain SA048 contig00018, whole genome shotgun sequence	22018..22809	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.95	438/438	JAVXYN010000048.1 Salmonella enterica strain SA048 contig00001, whole genome shotgun sequence	676762..677199	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	JAVXYN010000029.1 Salmonella enterica strain SA048 contig00020, whole genome shotgun sequence	1083..1943	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	JAVXYN010000031.1 Salmonella enterica strain SA048 contig00018, whole genome shotgun sequence	23314..24153	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	JAVXYN010000031.1 Salmonella enterica strain SA048 contig00018, whole genome shotgun sequence	12817..14016	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	JAVXYN010000031.1 Salmonella enterica strain SA048 contig00018, whole genome shotgun sequence	21113..21610	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																																																																gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col156	93.51	154 / 154	JAVXYN010000026.1 Salmonella enterica strain SA048 contig00023, whole genome shotgun sequence	548..701	enterobacteriales	IncFIB(K)	98.93	560 / 560	JAVXYN010000033.1 Salmonella enterica strain SA048 contig00016, whole genome shotgun sequence	5120..5679																																																avrA	JAVXYN010000045.1	39578..40447	98.966	870	0						
GCA_032337395.1_ASM3233739v1_genomic.fna	Salmonella_enterica	0.521	4.911 MB	1	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	8	aac(6')-Iaa,aadA2,aadA1,aadA1,blaTEM-1B,mph(A),sul1,tet(A),dfrA12	1	parC_p.T57S	2	Col(pHAD28),IncR	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	JAVXYK010000001.1 Salmonella enterica strain D7 1, whole genome shotgun sequence	2394754..2395191	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	JAVXYK010000002.1 Salmonella enterica strain D7 2, whole genome shotgun sequence	36464..37255	Spectinomycin, Streptomycin	JQ364967	aadA1	99.87	792/792	JAVXYK010000002.1 Salmonella enterica strain D7 2, whole genome shotgun sequence	16754..17545	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	JAVXYK010000002.1 Salmonella enterica strain D7 2, whole genome shotgun sequence	16754..17545	Spectinomycin, Streptomycin	JQ414041	blaTEM-1B	100	861/861	JAVXYK010000002.1 Salmonella enterica strain D7 2, whole genome shotgun sequence	19584..20444	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	JAVXYK010000002.1 Salmonella enterica strain D7 2, whole genome shotgun sequence	22210..23115	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	sul1	100	840/840	JAVXYK010000002.1 Salmonella enterica strain D7 2, whole genome shotgun sequence	37760..38599	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	JAVXYK010000001.1 Salmonella enterica strain D7 1, whole genome shotgun sequence	310095..311294	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	JAVXYK010000002.1 Salmonella enterica strain D7 2, whole genome shotgun sequence	35559..36056	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																																																									parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	JAVXYK010000003.1 Salmonella enterica strain D7 3, whole genome shotgun sequence	4338..4468	enterobacteriales	IncR	100	251 / 251	JAVXYK010000002.1 Salmonella enterica strain D7 2, whole genome shotgun sequence	8497..8747																																																avrA	JAVXYK010000001.1	1100995..1101864	99.195	870	0						
GCA_032337415.1_ASM3233741v1_genomic.fna	Salmonella_enterica	0.5203	738.124 KB	3	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	9	aph(3')-Ia,aadA1,aac(6')-Iaa,blaTEM-1B,mef(B),cml,sul3,tet(A),dfrA12	1	parC_p.T57S	3	Col(pHAD28),IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aph(3')-Ia	100	816/816	JAVXYM010000084.1 Salmonella enterica strain SA684 contig00045, whole genome shotgun sequence	189..1004	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aadA1	100	792/792	JAVXYM010000106.1 Salmonella enterica strain SA684 contig00023, whole genome shotgun sequence	3475..4266	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.03	438/438	JAVXYM010000128.1 Salmonella enterica strain SA684 contig00001, whole genome shotgun sequence	809685..810122	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	JAVXYM010000096.1 Salmonella enterica strain SA684 contig00033, whole genome shotgun sequence	149..1009	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mef(B)	100	1073/1230	JAVXYM010000090.1 Salmonella enterica strain SA684 contig00039, whole genome shotgun sequence	1..1073	Erythromycin, Azithromycin	FJ196385	cml	96.66	929/909	JAVXYM010000106.1 Salmonella enterica strain SA684 contig00023, whole genome shotgun sequence	4285..5206	Chloramphenicol	M22614	sul3	100	792/792	JAVXYM010000106.1 Salmonella enterica strain SA684 contig00023, whole genome shotgun sequence	1002..1793	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	JAVXYM010000107.1 Salmonella enterica strain SA684 contig00022, whole genome shotgun sequence	3641..4840	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	JAVXYM010000088.1 Salmonella enterica strain SA684 contig00041, whole genome shotgun sequence	614..1111	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																																																									parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	JAVXYM010000105.1 Salmonella enterica strain SA684 contig00024, whole genome shotgun sequence	3533..3663	enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	JAVXYM010000109.1 Salmonella enterica strain SA684 contig00020, whole genome shotgun sequence	2623..3304		enterobacteriales	IncFIC(FII)	94	500 / 499	JAVXYM010000112.1 Salmonella enterica strain SA684 contig00017, whole genome shotgun sequence	2722..3218																																									avrA	JAVXYM010000127.1	567383..568252	99.195	870	0						
GCA_032337435.1_ASM3233743v1_genomic.fna	Salmonella_enterica	0.5188	441.527 KB	5	aroC_5,dnaN_75,hemD_54,hisD_4,purE_76,sucA_109,thrA_75	696	8:i:z6	9	aadA1,aadA1,aac(3)-IV,aadA2,aac(6')-Iaa,blaTEM-1B,sul3,sul1,tet(A),dfrA12	1	parC_p.T57S	2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_75	hemD	100	100	hemD_54	hisD	100	100	hisD_4	purE	100	100	purE_76	sucA	100	100	sucA_109	thrA	100	100	thrA_75	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aadA1	99.87	792/792	JAVXYO010000039.1 Salmonella enterica strain SA046 contig00026, whole genome shotgun sequence	362..1153	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	JAVXYO010000039.1 Salmonella enterica strain SA046 contig00026, whole genome shotgun sequence	362..1153	Spectinomycin, Streptomycin	JQ414041	aac(3)-IV	100	777/777	JAVXYO010000042.1 Salmonella enterica strain SA046 contig00023, whole genome shotgun sequence	142..918	Gentamicin, Tobramycin	DQ241380	aadA2	100	792/792	JAVXYO010000044.1 Salmonella enterica strain SA046 contig00021, whole genome shotgun sequence	21719..22510	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	98.4	438/438	JAVXYO010000064.1 Salmonella enterica strain SA046 contig00001, whole genome shotgun sequence	146762..147199	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	JAVXYO010000042.1 Salmonella enterica strain SA046 contig00023, whole genome shotgun sequence	18597..19457	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul3	100	792/792	JAVXYO010000039.1 Salmonella enterica strain SA046 contig00026, whole genome shotgun sequence	2835..3626	Sulfamethoxazole	AJ459418	sul1	100	840/840	JAVXYO010000044.1 Salmonella enterica strain SA046 contig00021, whole genome shotgun sequence	23015..23854	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	JAVXYO010000044.1 Salmonella enterica strain SA046 contig00021, whole genome shotgun sequence	15780..16979	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	JAVXYO010000044.1 Salmonella enterica strain SA046 contig00021, whole genome shotgun sequence	20814..21311	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	JAVXYO010000056.1 Salmonella enterica strain SA046 contig00009, whole genome shotgun sequence	104412..104738	enterobacteriales	IncHI2A	99.52	630 / 630	JAVXYO010000056.1 Salmonella enterica strain SA046 contig00009, whole genome shotgun sequence	88915..89544																																																avrA	JAVXYO010000062.1	509970..510839	99.655	870	0						
GCA_032337455.1_ASM3233745v1_genomic.fna	Salmonella_enterica	0.5211	4.911 MB	1	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	8	aac(6')-Iaa,aadA2,aadA1,aadA1,blaTEM-1B,mph(A),sul1,tet(A),dfrA12	1	parC_p.T57S	2	Col(pHAD28),IncR	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	JAVXYJ010000001.1 Salmonella enterica strain D15 1, whole genome shotgun sequence	2394754..2395191	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	JAVXYJ010000002.1 Salmonella enterica strain D15 2, whole genome shotgun sequence	42962..43753	Spectinomycin, Streptomycin	JQ364967	aadA1	99.87	792/792	JAVXYJ010000002.1 Salmonella enterica strain D15 2, whole genome shotgun sequence	16754..17545	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	JAVXYJ010000002.1 Salmonella enterica strain D15 2, whole genome shotgun sequence	16754..17545	Spectinomycin, Streptomycin	JQ414041	blaTEM-1B	100	861/861	JAVXYJ010000002.1 Salmonella enterica strain D15 2, whole genome shotgun sequence	19584..20444	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	JAVXYJ010000002.1 Salmonella enterica strain D15 2, whole genome shotgun sequence	22210..23115	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	sul1	100	840/840	JAVXYJ010000002.1 Salmonella enterica strain D15 2, whole genome shotgun sequence	44258..45097	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	JAVXYJ010000001.1 Salmonella enterica strain D15 1, whole genome shotgun sequence	310095..311294	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	JAVXYJ010000002.1 Salmonella enterica strain D15 2, whole genome shotgun sequence	42057..42554	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																																																									parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	JAVXYJ010000003.1 Salmonella enterica strain D15 3, whole genome shotgun sequence	2120..2250	enterobacteriales	IncR	100	251 / 251	JAVXYJ010000002.1 Salmonella enterica strain D15 2, whole genome shotgun sequence	8497..8747																																																avrA	JAVXYJ010000001.1	1100995..1101864	99.195	870	0						
GCA_032338635.1_PDT001830412.1_genomic.fna	Salmonella_enterica	0.5218	214.784 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHWP010000002.1 Salmonella enterica strain PNUSAS366989 SAMN36726308-rid18897583.denovo.02, whole genome shotgun sequence	207388..207825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHWP010000076.1 Salmonella enterica strain PNUSAS366989 SAMN36726308-rid18897583.guided.32, whole genome shotgun sequence	1724..2161	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNHWP010000035.1 Salmonella enterica strain PNUSAS366989 SAMN36726308-rid18897583.denovo.36, whole genome shotgun sequence	6827..7469	enterobacteriales	IncFII(S)	100	262 / 262	ABNHWP010000057.1 Salmonella enterica strain PNUSAS366989 SAMN36726308-rid18897583.denovo.60, whole genome shotgun sequence	625..886																																																avrA	ABNHWP010000001.1	450786..451655	99.885	870	0						
GCA_032338755.1_PDT001830407.1_genomic.fna	Salmonella_enterica	0.5219	376.037 KB	5	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNHWT010000002.1 Salmonella enterica strain PNUSAS366993 SAMN36726208-rid18897563.denovo.02, whole genome shotgun sequence	478449..478886	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNHWT010000041.1 Salmonella enterica strain PNUSAS366993 SAMN36726208-rid18897563.guided.23, whole genome shotgun sequence	9802..10239	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNHWT010000018.1 Salmonella enterica strain PNUSAS366993 SAMN36726208-rid18897563.denovo.20, whole genome shotgun sequence	7948..8853	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNHWT010000044.1 Salmonella enterica strain PNUSAS366993 SAMN36726208-rid18897563.guided.36, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNHWT010000018.1 Salmonella enterica strain PNUSAS366993 SAMN36726208-rid18897563.denovo.20, whole genome shotgun sequence	19554..20767	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNHWT010000043.1 Salmonella enterica strain PNUSAS366993 SAMN36726208-rid18897563.guided.34, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNHWT010000018.1 Salmonella enterica strain PNUSAS366993 SAMN36726208-rid18897563.denovo.20, whole genome shotgun sequence	14164..15003	Sulfamethoxazole	U12338	sul1	100	840/840	ABNHWT010000042.1 Salmonella enterica strain PNUSAS366993 SAMN36726208-rid18897563.guided.28, whole genome shotgun sequence	4155..4994	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNHWT010000018.1 Salmonella enterica strain PNUSAS366993 SAMN36726208-rid18897563.denovo.20, whole genome shotgun sequence	17679..18953	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNHWT010000042.1 Salmonella enterica strain PNUSAS366993 SAMN36726208-rid18897563.guided.28, whole genome shotgun sequence	7670..8944	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNHWT010000018.1 Salmonella enterica strain PNUSAS366993 SAMN36726208-rid18897563.denovo.20, whole genome shotgun sequence	16048..16521	Trimethoprim	X00926	dfrA1	100	474/474	ABNHWT010000042.1 Salmonella enterica strain PNUSAS366993 SAMN36726208-rid18897563.guided.28, whole genome shotgun sequence	6039..6512	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNHWT010000022.1 Salmonella enterica strain PNUSAS366993 SAMN36726208-rid18897563.denovo.25, whole genome shotgun sequence	8391..8641																																																						avrA	ABNHWT010000001.1	552944..553813	99.77	870	0						
GCA_032338775.1_PDT001830406.1_genomic.fna	Salmonella_enterica	0.5214	113.529 KB	13	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNHWU010000038.1 Salmonella enterica strain PNUSAS366992 SAMN36726205-rid18898993.denovo.038, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNHWU010000118.1 Salmonella enterica strain PNUSAS366992 SAMN36726205-rid18898993.guided.095, whole genome shotgun sequence	530..967	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABNHWU010000045.1 Salmonella enterica strain PNUSAS366992 SAMN36726205-rid18898993.denovo.045, whole genome shotgun sequence	11532..11793																																																						avrA	ABNHWU010000006.1	93997..94866	98.966	870	0						
GCA_032338795.1_PDT001830405.1_genomic.fna	Salmonella_enterica	0.5214	476.57 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	1	IncFIB(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHWV010000001.1 Salmonella enterica strain PNUSAS367001 SAMN36726198-rid18897553.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHWV010000040.1 Salmonella enterica strain PNUSAS367001 SAMN36726198-rid18897553.guided.30, whole genome shotgun sequence	2437..2874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHWV010000018.1 Salmonella enterica strain PNUSAS367001 SAMN36726198-rid18897553.denovo.18, whole genome shotgun sequence	6826..7468																																																						avrA	ABNHWV010000002.1	553426..554295	99.54	870	0						
GCA_032338915.1_PDT001912906.1_genomic.fna	Salmonella_enterica	0.5212	153.484 KB	9	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHXE010000004.1 Salmonella enterica strain FDA1197181-S009-008 SAMN37661938-rid19586763.denovo.04, whole genome shotgun sequence	130433..130870	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHXE010000064.1 Salmonella enterica strain FDA1197181-S009-008 SAMN37661938-rid19586763.guided.43, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHXE010000022.1	39348..40218	99.196	871	0						
GCA_032338995.1_PDT001912905.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHXF010000001.1 Salmonella enterica strain PNUSAS387227 SAMN37661925-rid19586723.denovo.01, whole genome shotgun sequence	487438..487875	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHXF010000025.1 Salmonella enterica strain PNUSAS387227 SAMN37661925-rid19586723.guided.16, whole genome shotgun sequence	16193..16630	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHXF010000014.1 Salmonella enterica strain PNUSAS387227 SAMN37661925-rid19586723.denovo.15, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNHXF010000018.1 Salmonella enterica strain PNUSAS387227 SAMN37661925-rid19586723.denovo.21, whole genome shotgun sequence	3413..3674																																																avrA	ABNHXF010000002.1	553641..554510	99.54	870	0						
GCA_032339015.1_PDT001912904.1_genomic.fna	Salmonella_enterica	0.5209	408.251 KB	4	aroC_4,dnaN_164,hemD_134,hisD_195,purE_132,sucA_46,thrA_158	544	8:z10:z6	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_4	dnaN	100	100	dnaN_164	hemD	100	100	hemD_134	hisD	100	100	hisD_195	purE	100	100	purE_132	sucA	100	100	sucA_46	thrA	100	100	thrA_158	8	z10	z6	Salmonella enterica subspecies enterica (subspecies I)	Molade or Wippra	The predicted serotypes share the same general formula: 8:z10:z6 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNHXH010000001.1 Salmonella enterica strain PNUSAS387231 SAMN37661921-rid19586713.denovo.01, whole genome shotgun sequence	815392..815829	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNHXH010000032.1 Salmonella enterica strain PNUSAS387231 SAMN37661921-rid19586713.guided.21, whole genome shotgun sequence	2300..2737	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNHXH010000003.1 Salmonella enterica strain PNUSAS387231 SAMN37661921-rid19586713.denovo.03, whole genome shotgun sequence	401765..402187	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNHXH010000030.1 Salmonella enterica strain PNUSAS387231 SAMN37661921-rid19586713.guided.16, whole genome shotgun sequence	18572..18994	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNHXH010000019.1 Salmonella enterica strain PNUSAS387231 SAMN37661921-rid19586713.denovo.23, whole genome shotgun sequence	1708..1838																																																						avrA	ABNHXH010000002.1	151345..152214	99.195	870	0						
GCA_032339035.1_PDT001912903.1_genomic.fna	Salmonella_enterica	0.5218	410.978 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNHXG010000001.1 Salmonella enterica strain PNUSAS387229 SAMN37661923-rid19586703.denovo.01, whole genome shotgun sequence	835112..835549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNHXG010000026.1 Salmonella enterica strain PNUSAS387229 SAMN37661923-rid19586703.guided.18, whole genome shotgun sequence	4619..5056	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHXG010000003.1	148520..149389	99.77	870	0						
GCA_032339055.1_PDT001912902.1_genomic.fna	Salmonella_enterica	0.5217	466.714 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHXL010000001.1 Salmonella enterica strain PNUSAS387228 SAMN37661924-rid19586693.denovo.01, whole genome shotgun sequence	674296..674733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHXL010000023.1 Salmonella enterica strain PNUSAS387228 SAMN37661924-rid19586693.guided.17, whole genome shotgun sequence	797..1234	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHXL010000009.1	150695..151565	99.196	871	0						
GCA_032339075.1_PDT001912901.1_genomic.fna	Salmonella_enterica	0.5217	410.978 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNHXJ010000001.1 Salmonella enterica strain PNUSAS387230 SAMN37661922-rid19586753.denovo.01, whole genome shotgun sequence	684026..684463	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNHXJ010000026.1 Salmonella enterica strain PNUSAS387230 SAMN37661922-rid19586753.guided.19, whole genome shotgun sequence	9496..9933	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHXJ010000003.1	148520..149389	99.77	870	0						
GCA_032339095.1_PDT001912899.1_genomic.fna	Salmonella_enterica	0.5225	521.433 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNHXI010000001.1 Salmonella enterica strain PNUSAS387233 SAMN37661919-rid19586743.denovo.01, whole genome shotgun sequence	835025..835462	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNHXI010000026.1 Salmonella enterica strain PNUSAS387233 SAMN37661919-rid19586743.guided.21, whole genome shotgun sequence	75..512	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNHXI010000014.1 Salmonella enterica strain PNUSAS387233 SAMN37661919-rid19586743.denovo.15, whole genome shotgun sequence	3954..5153	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNHXI010000025.1 Salmonella enterica strain PNUSAS387233 SAMN37661919-rid19586743.guided.17, whole genome shotgun sequence	3043..4242	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	92.11	114 / 114	ABNHXI010000014.1 Salmonella enterica strain PNUSAS387233 SAMN37661919-rid19586743.denovo.15, whole genome shotgun sequence	153..266																																																						avrA	ABNHXI010000002.1	595896..596765	99.77	870	0						
GCA_032339115.1_PDT001912900.1_genomic.fna	Salmonella_enterica	0.5211	478.79 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHXK010000001.1 Salmonella enterica strain PNUSAS387232 SAMN37661920-rid19586683.denovo.01, whole genome shotgun sequence	162379..162816	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHXK010000028.1 Salmonella enterica strain PNUSAS387232 SAMN37661920-rid19586683.guided.19, whole genome shotgun sequence	3265..3702	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHXK010000014.1 Salmonella enterica strain PNUSAS387232 SAMN37661920-rid19586683.denovo.14, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNHXK010000018.1 Salmonella enterica strain PNUSAS387232 SAMN37661920-rid19586683.denovo.21, whole genome shotgun sequence	3446..3707																																																avrA	ABNHXK010000002.1	585418..586287	99.54	870	0						
GCA_032339135.1_PDT001912896.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHXO010000001.1 Salmonella enterica strain PNUSAS387206 SAMN37661918-rid19586653.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHXO010000025.1 Salmonella enterica strain PNUSAS387206 SAMN37661918-rid19586653.guided.17, whole genome shotgun sequence	3184..3621	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHXO010000012.1 Salmonella enterica strain PNUSAS387206 SAMN37661918-rid19586653.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNHXO010000015.1 Salmonella enterica strain PNUSAS387206 SAMN37661918-rid19586653.denovo.18, whole genome shotgun sequence	3369..3630																																																avrA	ABNHXO010000002.1	553636..554505	99.54	870	0						
GCA_032339155.1_PDT001912898.1_genomic.fna	Salmonella_enterica	0.5212	383.918 KB	6	aroC_83,dnaN_46,hemD_25,hisD_148,purE_33,sucA_23,thrA_63	450	13:d:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_83	dnaN	100	100	dnaN_46	hemD	100	100	hemD_25	hisD	100	100	hisD_148	purE	100	100	purE_33	sucA	100	100	sucA_23	thrA	100	100	thrA_63	13	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Telelkebir		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNHXM010000003.1 Salmonella enterica strain PNUSAS387210 SAMN37661916-rid19586673.denovo.03, whole genome shotgun sequence	37901..38338	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNHXM010000046.1 Salmonella enterica strain PNUSAS387210 SAMN37661916-rid19586673.guided.28, whole genome shotgun sequence	2556..2993	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNHXM010000001.1 Salmonella enterica strain PNUSAS387210 SAMN37661916-rid19586673.denovo.01, whole genome shotgun sequence	390280..390702	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNHXM010000045.1 Salmonella enterica strain PNUSAS387210 SAMN37661916-rid19586673.guided.26, whole genome shotgun sequence	14709..15131	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032339175.1_PDT001912897.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHXN010000001.1 Salmonella enterica strain PNUSAS387219 SAMN37661906-rid19586663.denovo.01, whole genome shotgun sequence	774368..774805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHXN010000022.1 Salmonella enterica strain PNUSAS387219 SAMN37661906-rid19586663.guided.20, whole genome shotgun sequence	1716..2153	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHXN010000012.1 Salmonella enterica strain PNUSAS387219 SAMN37661906-rid19586663.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNHXN010000015.1 Salmonella enterica strain PNUSAS387219 SAMN37661906-rid19586663.denovo.16, whole genome shotgun sequence	3388..3649																																																avrA	ABNHXN010000002.1	553636..554505	99.54	870	0						
GCA_032339185.1_PDT001912895.1_genomic.fna	Salmonella_enterica	0.521	737.169 KB	2	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNHXP010000001.1 Salmonella enterica strain PNUSAS387222 SAMN37661901-rid19586643.denovo.01, whole genome shotgun sequence	648005..648442	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNHXP010000020.1 Salmonella enterica strain PNUSAS387222 SAMN37661901-rid19586643.guided.14, whole genome shotgun sequence	13364..13801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHXP010000003.1	183308..184177	99.425	870	0						
GCA_032339215.1_PDT001912893.1_genomic.fna	Salmonella_enterica	0.5192	328.693 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHXQ010000001.1 Salmonella enterica strain PNUSAS387213 SAMN37661913-rid19586623.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHXQ010000035.1 Salmonella enterica strain PNUSAS387213 SAMN37661913-rid19586623.guided.27, whole genome shotgun sequence	10376..10813	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNHXQ010000008.1 Salmonella enterica strain PNUSAS387213 SAMN37661913-rid19586623.denovo.08, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNHXQ010000036.1 Salmonella enterica strain PNUSAS387213 SAMN37661913-rid19586623.guided.29, whole genome shotgun sequence	291..713	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHXQ010000002.1	169368..170237	99.195	870	0						
GCA_032339235.1_PDT001912892.1_genomic.fna	Salmonella_enterica	0.5217	341.22 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHXT010000001.1 Salmonella enterica strain PNUSAS387217 SAMN37661910-rid19586613.denovo.01, whole genome shotgun sequence	482682..483119	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHXT010000041.1 Salmonella enterica strain PNUSAS387217 SAMN37661910-rid19586613.guided.30, whole genome shotgun sequence	3534..3971	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNHXT010000016.1 Salmonella enterica strain PNUSAS387217 SAMN37661910-rid19586613.denovo.16, whole genome shotgun sequence	76933..77575	enterobacteriales	IncFII(S)	100	262 / 262	ABNHXT010000016.1 Salmonella enterica strain PNUSAS387217 SAMN37661910-rid19586613.denovo.16, whole genome shotgun sequence	61587..61848																																																avrA	ABNHXT010000004.1	174641..175510	99.885	870	0						
GCA_032339255.1_PDT001912894.1_genomic.fna	Salmonella_enterica	0.5201	678.5 KB	2	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNHXR010000001.1 Salmonella enterica strain PNUSAS387224 SAMN37661897-rid19586633.denovo.01, whole genome shotgun sequence	1379659..1380096	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNHXR010000018.1 Salmonella enterica strain PNUSAS387224 SAMN37661897-rid19586633.guided.10, whole genome shotgun sequence	8915..9352	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNHXR010000009.1 Salmonella enterica strain PNUSAS387224 SAMN37661897-rid19586633.denovo.09, whole genome shotgun sequence	65006..66151	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNHXR010000020.1 Salmonella enterica strain PNUSAS387224 SAMN37661897-rid19586633.guided.14, whole genome shotgun sequence	21865..23010	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNHXR010000014.1 Salmonella enterica strain PNUSAS387224 SAMN37661897-rid19586633.denovo.18, whole genome shotgun sequence	1271..1401	enterobacteriales	Col440I	90.27	113 / 114	ABNHXR010000013.1 Salmonella enterica strain PNUSAS387224 SAMN37661897-rid19586633.denovo.17, whole genome shotgun sequence	3520..3632		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNHXR010000009.1 Salmonella enterica strain PNUSAS387224 SAMN37661897-rid19586633.denovo.09, whole genome shotgun sequence	70643..70784		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNHXR010000020.1 Salmonella enterica strain PNUSAS387224 SAMN37661897-rid19586633.guided.14, whole genome shotgun sequence	17232..17373																																		avrA	ABNHXR010000002.1	179094..179963	99.425	870	0						
GCA_032339275.1_PDT001912890.1_genomic.fna	Salmonella_enterica	0.5192	394.481 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNHXU010000001.1 Salmonella enterica strain FDA1199253-S004-010 SAMN37661907-rid19586593.denovo.01, whole genome shotgun sequence	498158..498595	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNHXU010000032.1 Salmonella enterica strain FDA1199253-S004-010 SAMN37661907-rid19586593.guided.19, whole genome shotgun sequence	9646..10083	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHXU010000002.1	545006..545874	99.425	870	0						
GCA_032339295.1_PDT001912891.1_genomic.fna	Salmonella_enterica	0.5214	501.261 KB	5	aroC_104,dnaN_100,hemD_54,hisD_78,purE_104,sucA_9,thrA_48	292	8:z4,z24:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_104	dnaN	100	100	dnaN_100	hemD	100	100	hemD_54	hisD	100	100	hisD_78	purE	100	100	purE_104	sucA	100	100	sucA_9	thrA	100	100	thrA_48	8	z4,z24	-	Salmonella enterica subspecies enterica (subspecies I)	Albany or Duesseldorf	The predicted serotypes share the same general formula: 8:z4,z24:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHXS010000002.1 Salmonella enterica strain PNUSAS387220 SAMN37661904-rid19586603.denovo.02, whole genome shotgun sequence	483344..483781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHXS010000025.1 Salmonella enterica strain PNUSAS387220 SAMN37661904-rid19586603.guided.15, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	95.65	138 / 142	ABNHXS010000011.1 Salmonella enterica strain PNUSAS387220 SAMN37661904-rid19586603.denovo.11, whole genome shotgun sequence	16534..16669																																																						avrA	ABNHXS010000001.1	145248..146117	99.08	870	0						
GCA_032339315.1_PDT001912889.1_genomic.fna	Salmonella_enterica	0.5214	225.554 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNHXV010000002.1 Salmonella enterica strain FDA1197181-S009-010 SAMN37661900-rid19586583.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNHXV010000052.1 Salmonella enterica strain FDA1197181-S009-010 SAMN37661900-rid19586583.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNHXV010000004.1	174540..175408	100	869	0						
GCA_032339335.1_PDT001912888.1_genomic.fna	Salmonella_enterica	0.5208	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHXX010000001.1 Salmonella enterica strain PNUSAS387225 SAMN37661894-rid19586573.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHXX010000024.1 Salmonella enterica strain PNUSAS387225 SAMN37661894-rid19586573.guided.15, whole genome shotgun sequence	3908..4345	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABNHXX010000025.1 Salmonella enterica strain PNUSAS387225 SAMN37661894-rid19586573.guided.16, whole genome shotgun sequence	3908..4345	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHXX010000012.1 Salmonella enterica strain PNUSAS387225 SAMN37661894-rid19586573.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNHXX010000012.1 Salmonella enterica strain PNUSAS387225 SAMN37661894-rid19586573.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNHXX010000002.1	553636..554505	99.54	870	0						
GCA_032339355.1_PDT001912887.1_genomic.fna	Salmonella_enterica	0.5212	215.724 KB	7	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHXW010000001.1 Salmonella enterica strain FDA1197181-S009-009 SAMN37661895-rid19586563.denovo.01, whole genome shotgun sequence	396598..397035	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHXW010000051.1 Salmonella enterica strain FDA1197181-S009-009 SAMN37661895-rid19586563.guided.33, whole genome shotgun sequence	4881..5318	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHXW010000021.1	39470..40340	99.196	871	0						
GCA_032339375.1_PDT001912886.1_genomic.fna	Salmonella_enterica	0.5195	368.134 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHXZ010000001.1 Salmonella enterica strain PNUSAS387214 SAMN37661912-rid19586553.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHXZ010000036.1 Salmonella enterica strain PNUSAS387214 SAMN37661912-rid19586553.guided.24, whole genome shotgun sequence	13458..13895	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNHXZ010000005.1 Salmonella enterica strain PNUSAS387214 SAMN37661912-rid19586553.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNHXZ010000037.1 Salmonella enterica strain PNUSAS387214 SAMN37661912-rid19586553.guided.26, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHXZ010000002.1	173924..174793	99.195	870	0						
GCA_032339395.1_PDT001912884.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHYB010000001.1 Salmonella enterica strain PNUSAS387211 SAMN37661915-rid19586533.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHYB010000024.1 Salmonella enterica strain PNUSAS387211 SAMN37661915-rid19586533.guided.18, whole genome shotgun sequence	5376..5813	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHYB010000012.1 Salmonella enterica strain PNUSAS387211 SAMN37661915-rid19586533.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNHYB010000012.1 Salmonella enterica strain PNUSAS387211 SAMN37661915-rid19586533.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNHYB010000002.1	553636..554505	99.54	870	0						
GCA_032339415.1_PDT001912885.1_genomic.fna	Salmonella_enterica	0.5197	396.374 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNHXY010000001.1 Salmonella enterica strain FDA1199253-S004-026 SAMN37661896-rid19586543.denovo.01, whole genome shotgun sequence	498158..498595	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNHXY010000035.1 Salmonella enterica strain FDA1199253-S004-026 SAMN37661896-rid19586543.guided.25, whole genome shotgun sequence	3537..3974	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHXY010000002.1	544714..545582	99.425	870	0						
GCA_032339455.1_PDT001912883.1_genomic.fna	Salmonella_enterica	0.5229	263.611 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHYA010000001.1 Salmonella enterica strain PNUSAS387221 SAMN37661902-rid19586523.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNHYA010000035.1 Salmonella enterica strain PNUSAS387221 SAMN37661902-rid19586523.guided.25, whole genome shotgun sequence	2350..2787	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHYA010000004.1	179418..180287	99.655	870	0						
GCA_032339495.1_PDT001912879.1_genomic.fna	Salmonella_enterica	0.521	344.707 KB	6	aroC_83,dnaN_46,hemD_25,hisD_148,purE_33,sucA_23,thrA_63	450	13:d:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_83	dnaN	100	100	dnaN_46	hemD	100	100	hemD_25	hisD	100	100	hisD_148	purE	100	100	purE_33	sucA	100	100	sucA_23	thrA	100	100	thrA_63	13	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Telelkebir		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNHYG010000002.1 Salmonella enterica strain PNUSAS387218 SAMN37661908-rid19586483.denovo.02, whole genome shotgun sequence	37901..38338	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNHYG010000046.1 Salmonella enterica strain PNUSAS387218 SAMN37661908-rid19586483.guided.36, whole genome shotgun sequence	1585..2022	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNHYG010000006.1 Salmonella enterica strain PNUSAS387218 SAMN37661908-rid19586483.denovo.06, whole genome shotgun sequence	177154..177576	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNHYG010000044.1 Salmonella enterica strain PNUSAS387218 SAMN37661908-rid19586483.guided.27, whole genome shotgun sequence	16318..16740	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032339525.1_PDT001912881.1_genomic.fna	Salmonella_enterica	0.52	159.544 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNHYF010000009.1 Salmonella enterica strain PNUSAS387223 SAMN37661898-rid19586503.denovo.09, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNHYF010000055.1 Salmonella enterica strain PNUSAS387223 SAMN37661898-rid19586503.guided.48, whole genome shotgun sequence	776..1210	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032339575.1_PDT001912877.1_genomic.fna	Salmonella_enterica	0.5197	287.333 KB	7	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNHYH010000004.1 Salmonella enterica strain FDA1236474-C001-001 SAMN37661905-rid19586463.denovo.04, whole genome shotgun sequence	148138..148575	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNHYH010000029.1 Salmonella enterica strain FDA1236474-C001-001 SAMN37661905-rid19586463.guided.21, whole genome shotgun sequence	16421..16858	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNHYH010000001.1 Salmonella enterica strain FDA1236474-C001-001 SAMN37661905-rid19586463.denovo.01, whole genome shotgun sequence	160606..161028	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNHYH010000032.1 Salmonella enterica strain FDA1236474-C001-001 SAMN37661905-rid19586463.guided.25, whole genome shotgun sequence	22725..23147	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHYH010000002.1	186351..187220	99.655	870	0						
GCA_032339595.1_PDT001912875.1_genomic.fna	Salmonella_enterica	0.522	355.803 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHYJ010000001.1 Salmonella enterica strain PNUSAS387215 SAMN37661911-rid19586443.denovo.01, whole genome shotgun sequence	591894..592331	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHYJ010000040.1 Salmonella enterica strain PNUSAS387215 SAMN37661911-rid19586443.guided.28, whole genome shotgun sequence	1826..2263	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNHYJ010000015.1 Salmonella enterica strain PNUSAS387215 SAMN37661911-rid19586443.denovo.15, whole genome shotgun sequence	15164..15806	enterobacteriales	IncFII(S)	100	262 / 262	ABNHYJ010000015.1 Salmonella enterica strain PNUSAS387215 SAMN37661911-rid19586443.denovo.15, whole genome shotgun sequence	30891..31152																																																avrA	ABNHYJ010000005.1	175008..175877	99.885	870	0						
GCA_032339615.1_PDT001912876.1_genomic.fna	Salmonella_enterica	0.5206	478.724 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHYI010000001.1 Salmonella enterica strain PNUSAS387216 SAMN37661909-rid19586453.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHYI010000025.1 Salmonella enterica strain PNUSAS387216 SAMN37661909-rid19586453.guided.16, whole genome shotgun sequence	17217..17654	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHYI010000015.1 Salmonella enterica strain PNUSAS387216 SAMN37661909-rid19586453.denovo.15, whole genome shotgun sequence	15268..15910	enterobacteriales	IncFII(S)	100	262 / 262	ABNHYI010000017.1 Salmonella enterica strain PNUSAS387216 SAMN37661909-rid19586453.denovo.20, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.93	374 / 374	ABNHYI010000011.1 Salmonella enterica strain PNUSAS387216 SAMN37661909-rid19586453.denovo.11, whole genome shotgun sequence	32011..32384																																									avrA	ABNHYI010000002.1	553690..554559	99.54	870	0						
GCA_032339635.1_PDT001912873.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHYM010000001.1 Salmonella enterica strain PNUSAS387212 SAMN37661914-rid19586423.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.27	429/438	ABNHYM010000025.1 Salmonella enterica strain PNUSAS387212 SAMN37661914-rid19586423.guided.18, whole genome shotgun sequence	1..429	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHYM010000012.1 Salmonella enterica strain PNUSAS387212 SAMN37661914-rid19586423.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNHYM010000012.1 Salmonella enterica strain PNUSAS387212 SAMN37661914-rid19586423.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABNHYM010000002.1	553636..554505	99.54	870	0						
GCA_032339655.1_PDT001912874.1_genomic.fna	Salmonella_enterica	0.5207	480.72 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNHYK010000008.1 Salmonella enterica strain PNUSAS387226 SAMN37661891-rid19586433.denovo.08, whole genome shotgun sequence	145169..145606	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	426/438	ABNHYK010000031.1 Salmonella enterica strain PNUSAS387226 SAMN37661891-rid19586433.guided.29, whole genome shotgun sequence	1..426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHYK010000001.1	204158..205027	99.425	870	0						
GCA_032339695.1_PDT001912870.1_genomic.fna	Salmonella_enterica	0.5211	296.474 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHYO010000001.1 Salmonella enterica strain FDA1197181-S009-016 SAMN37661890-rid19586393.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHYO010000046.1 Salmonella enterica strain FDA1197181-S009-016 SAMN37661890-rid19586393.guided.26, whole genome shotgun sequence	20972..21409	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHYO010000018.1	39358..40228	99.196	871	0						
GCA_032339715.1_PDT001912872.1_genomic.fna	Salmonella_enterica	0.5195	383.965 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHYN010000001.1 Salmonella enterica strain PNUSAS387209 SAMN37661917-rid19586413.denovo.01, whole genome shotgun sequence	258398..258835	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHYN010000056.1 Salmonella enterica strain PNUSAS387209 SAMN37661917-rid19586413.guided.31, whole genome shotgun sequence	5009..5446	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032339735.1_PDT001912869.1_genomic.fna	Salmonella_enterica	0.521	478.749 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHYP010000001.1 Salmonella enterica strain PNUSAS387204 SAMN37661889-rid19586383.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHYP010000027.1 Salmonella enterica strain PNUSAS387204 SAMN37661889-rid19586383.guided.19, whole genome shotgun sequence	5240..5677	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHYP010000014.1 Salmonella enterica strain PNUSAS387204 SAMN37661889-rid19586383.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNHYP010000014.1 Salmonella enterica strain PNUSAS387204 SAMN37661889-rid19586383.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNHYP010000002.1	585348..586217	99.54	870	0						
GCA_032339755.1_PDT001912868.1_genomic.fna	Salmonella_enterica	0.5193	301.414 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	4	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,fosA7,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHYQ010000001.1 Salmonella enterica strain PNUSAS387205 SAMN37661888-rid19586373.denovo.01, whole genome shotgun sequence	486024..486461	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHYQ010000058.1 Salmonella enterica strain PNUSAS387205 SAMN37661888-rid19586373.guided.48, whole genome shotgun sequence	1163..1600	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNHYQ010000007.1 Salmonella enterica strain PNUSAS387205 SAMN37661888-rid19586373.denovo.07, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.4	423/423	ABNHYQ010000054.1 Salmonella enterica strain PNUSAS387205 SAMN37661888-rid19586373.guided.38, whole genome shotgun sequence	9453..9875	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNHYQ010000055.1 Salmonella enterica strain PNUSAS387205 SAMN37661888-rid19586373.guided.39, whole genome shotgun sequence	9453..9875	Fosfomycin	LAPJ01000014	sul2	100	816/816	ABNHYQ010000035.1 Salmonella enterica strain PNUSAS387205 SAMN37661888-rid19586373.denovo.37, whole genome shotgun sequence	2652..3467	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNHYQ010000056.1 Salmonella enterica strain PNUSAS387205 SAMN37661888-rid19586373.guided.40, whole genome shotgun sequence	9342..10157	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNHYQ010000036.1 Salmonella enterica strain PNUSAS387205 SAMN37661888-rid19586373.denovo.42, whole genome shotgun sequence	1203..2408	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNHYQ010000057.1 Salmonella enterica strain PNUSAS387205 SAMN37661888-rid19586373.guided.41, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																									parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHYQ010000021.1	64444..65313	99.195	870	0						
GCA_032339775.1_PDT001912867.1_genomic.fna	Salmonella_enterica	0.5217	324.529 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHYR010000001.1 Salmonella enterica strain PNUSAS387208 SAMN37661886-rid19586363.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNHYR010000024.1 Salmonella enterica strain PNUSAS387208 SAMN37661886-rid19586363.denovo.25, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHYR010000024.1 Salmonella enterica strain PNUSAS387208 SAMN37661886-rid19586363.denovo.25, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNHYR010000035.1 Salmonella enterica strain PNUSAS387208 SAMN37661886-rid19586363.denovo.40, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNHYR010000035.1 Salmonella enterica strain PNUSAS387208 SAMN37661886-rid19586363.denovo.40, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNHYR010000051.1 Salmonella enterica strain PNUSAS387208 SAMN37661886-rid19586363.guided.34, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHYR010000051.1 Salmonella enterica strain PNUSAS387208 SAMN37661886-rid19586363.guided.34, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNHYR010000052.1 Salmonella enterica strain PNUSAS387208 SAMN37661886-rid19586363.guided.35, whole genome shotgun sequence	344..781	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNHYR010000054.1 Salmonella enterica strain PNUSAS387208 SAMN37661886-rid19586363.guided.38, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNHYR010000054.1 Salmonella enterica strain PNUSAS387208 SAMN37661886-rid19586363.guided.38, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNHYR010000024.1 Salmonella enterica strain PNUSAS387208 SAMN37661886-rid19586363.denovo.25, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNHYR010000051.1 Salmonella enterica strain PNUSAS387208 SAMN37661886-rid19586363.guided.34, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNHYR010000024.1 Salmonella enterica strain PNUSAS387208 SAMN37661886-rid19586363.denovo.25, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNHYR010000053.1 Salmonella enterica strain PNUSAS387208 SAMN37661886-rid19586363.guided.37, whole genome shotgun sequence	3476..4675	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNHYR010000027.1 Salmonella enterica strain PNUSAS387208 SAMN37661886-rid19586363.denovo.28, whole genome shotgun sequence	9109..9668																																																						avrA	ABNHYR010000002.1	149828..150697	99.655	870	0						
GCA_032339795.1_PDT001912866.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHYU010000001.1 Salmonella enterica strain PNUSAS387207 SAMN37661887-rid19586353.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHYU010000022.1 Salmonella enterica strain PNUSAS387207 SAMN37661887-rid19586353.guided.18, whole genome shotgun sequence	3849..4286	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHYU010000012.1 Salmonella enterica strain PNUSAS387207 SAMN37661887-rid19586353.denovo.13, whole genome shotgun sequence	40535..41177	enterobacteriales	IncFII(S)	100	262 / 262	ABNHYU010000015.1 Salmonella enterica strain PNUSAS387207 SAMN37661887-rid19586353.denovo.16, whole genome shotgun sequence	3392..3653																																																avrA	ABNHYU010000002.1	553636..554505	99.54	870	0						
GCA_032339835.1_PDT001912865.1_genomic.fna	Salmonella_enterica	0.5199	316.643 KB	6	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNHYT010000004.1 Salmonella enterica strain FDA1236474-C001-003 SAMN37661748-rid19586343.denovo.04, whole genome shotgun sequence	147879..148316	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNHYT010000032.1 Salmonella enterica strain FDA1236474-C001-003 SAMN37661748-rid19586343.guided.22, whole genome shotgun sequence	16421..16858	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNHYT010000006.1 Salmonella enterica strain FDA1236474-C001-003 SAMN37661748-rid19586343.denovo.06, whole genome shotgun sequence	160606..161028	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNHYT010000031.1 Salmonella enterica strain FDA1236474-C001-003 SAMN37661748-rid19586343.guided.19, whole genome shotgun sequence	74280..74702	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHYT010000005.1	186353..187222	99.655	870	0						
GCA_032339875.1_PDT001912864.1_genomic.fna	Salmonella_enterica	0.5209	430.434 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHYW010000001.1 Salmonella enterica strain FDA1197181-S009-006 SAMN37661741-rid19586333.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHYW010000034.1 Salmonella enterica strain FDA1197181-S009-006 SAMN37661741-rid19586333.guided.14, whole genome shotgun sequence	4065..4502	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHYW010000009.1	150720..151590	99.196	871	0						
GCA_032339895.1_PDT001912861.1_genomic.fna	Salmonella_enterica	0.5194	439.514 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNHYX010000002.1 Salmonella enterica strain FDA1199253-S004-018 SAMN37661746-rid19586303.denovo.02, whole genome shotgun sequence	474530..474967	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNHYX010000032.1 Salmonella enterica strain FDA1199253-S004-018 SAMN37661746-rid19586303.guided.22, whole genome shotgun sequence	27013..27450	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHYX010000001.1	544714..545582	99.425	870	0						
GCA_032339935.1_PDT001912859.1_genomic.fna	Salmonella_enterica	0.5194	394.481 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNHYZ010000001.1 Salmonella enterica strain FDA1199253-S004-020 SAMN37661738-rid19586283.denovo.01, whole genome shotgun sequence	498158..498595	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNHYZ010000033.1 Salmonella enterica strain FDA1199253-S004-020 SAMN37661738-rid19586283.guided.24, whole genome shotgun sequence	12095..12532	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHYZ010000002.1	544714..545582	99.425	870	0						
GCA_032339975.1_PDT001912857.1_genomic.fna	Salmonella_enterica	0.5194	386.783 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNHZC010000002.1 Salmonella enterica strain FDA1199253-S004-025 SAMN37661743-rid19586263.denovo.02, whole genome shotgun sequence	474529..474966	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNHZC010000037.1 Salmonella enterica strain FDA1199253-S004-025 SAMN37661743-rid19586263.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHZC010000001.1	544714..545582	99.425	870	0						
GCA_032339995.1_PDT001912856.1_genomic.fna	Salmonella_enterica	0.5209	263.889 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHZB010000001.1 Salmonella enterica strain FDA1197181-S009-007 SAMN37661739-rid19586253.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHZB010000051.1 Salmonella enterica strain FDA1197181-S009-007 SAMN37661739-rid19586253.guided.30, whole genome shotgun sequence	10479..10916	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHZB010000019.1	39348..40218	99.196	871	0						
GCA_032340015.1_PDT001912855.1_genomic.fna	Salmonella_enterica	0.5191	395.024 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNHZD010000002.1 Salmonella enterica strain FDA1199253-S004-017 SAMN37661744-rid19586243.denovo.02, whole genome shotgun sequence	474530..474967	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNHZD010000033.1 Salmonella enterica strain FDA1199253-S004-017 SAMN37661744-rid19586243.guided.16, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNHZD010000001.1	544714..545582	99.425	870	0						
GCA_032340135.1_PDT001912849.1_genomic.fna	Salmonella_enterica	0.5168	214.302 KB	9	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	14	aac(6')-Iaa,aadA1,aadA13,aph(4)-Ia,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(3)-IV,aadA13,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,fosA7,fosA7,mph(B),erm(N),mph(B),erm(N),sul1,sul2,sul1,sul1,sul2,tet(B),tet(B)	1	parC_p.T57S	5	IncHI2,IncHI2A,IncI1-I(Alpha),IncW,IncW,IncY	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAPZPL010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.03, whole genome shotgun sequence	186899..187336	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	DAPZPL010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.31, whole genome shotgun sequence	43606..44397	Spectinomycin, Streptomycin	JX185132	aadA13	100	798/798	DAPZPL010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.33, whole genome shotgun sequence	6695..7492	Spectinomycin, Streptomycin	NC010643	aph(4)-Ia	100	1026/1026	DAPZPL010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.42, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aph(6)-Id	100	837/837	DAPZPL010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.42, whole genome shotgun sequence	7089..7925	Streptomycin	M28829	aph(3')-Ia	99.88	816/816	DAPZPL010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.42, whole genome shotgun sequence	5938..6753	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EF015636	aph(3'')-Ib	100	803/804	DAPZPL010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.42, whole genome shotgun sequence	7925..8727	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAPZPL010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.42, whole genome shotgun sequence	7925..8728	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAPZPL010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.42, whole genome shotgun sequence	7925..8728	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAPZPL010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.42, whole genome shotgun sequence	7925..8728	Streptomycin	AF321550	aac(3)-IV	100	777/777	DAPZPL010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.42, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aadA13	100	798/798	DAPZPL010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.37, whole genome shotgun sequence	200..997	Spectinomycin, Streptomycin	NC010643	aac(6')-Iaa	98.17	438/438	DAPZPL010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.48, whole genome shotgun sequence	2118..2555	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	DAPZPL010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.49, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	DAPZPL010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.49, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	aadA1	100	792/792	DAPZPL010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.52, whole genome shotgun sequence	367..1158	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	DAPZPL010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.53, whole genome shotgun sequence	367..1158	Spectinomycin, Streptomycin	JX185132	aph(6)-Id	100	837/837	DAPZPL010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.55, whole genome shotgun sequence	838..1674	Streptomycin	M28829	aph(3')-Ia	99.88	816/816	DAPZPL010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.55, whole genome shotgun sequence	2010..2825	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EF015636	aph(3'')-Ib	100	803/804	DAPZPL010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.55, whole genome shotgun sequence	36..838	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAPZPL010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.55, whole genome shotgun sequence	35..838	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAPZPL010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.55, whole genome shotgun sequence	35..838	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAPZPL010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.55, whole genome shotgun sequence	35..838	Streptomycin	AF321550	fosA7	97.16	423/423	DAPZPL010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.07, whole genome shotgun sequence	160606..161028	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	DAPZPL010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.38, whole genome shotgun sequence	18575..18997	Fosfomycin	LAPJ01000014	mph(B)	100	902/909	DAPZPL010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.31, whole genome shotgun sequence	33629..34530	Erythromycin, Spiramycin, Telithromycin	D85892	erm(N)	100	903/903	DAPZPL010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.33, whole genome shotgun sequence	274..1176	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	MZ015744	mph(B)	100	902/909	DAPZPL010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.43, whole genome shotgun sequence	5808..6709	Erythromycin, Spiramycin, Telithromycin	D85892	erm(N)	100	903/903	DAPZPL010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.58, whole genome shotgun sequence	861..1763	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	MZ015744	sul1	100	840/840	DAPZPL010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.31, whole genome shotgun sequence	42262..43101	Sulfamethoxazole	U12338	sul2	100	816/816	DAPZPL010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.42, whole genome shotgun sequence	8789..9604	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAPZPL010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.52, whole genome shotgun sequence	1663..2502	Sulfamethoxazole	U12338	sul1	100	840/840	DAPZPL010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.53, whole genome shotgun sequence	1663..2502	Sulfamethoxazole	U12338	sul2	100	816/816	DAPZPL010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.57, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	tet(B)	99.92	1206/1206	DAPZPL010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.45, whole genome shotgun sequence	1202..2407	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	DAPZPL010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.51, whole genome shotgun sequence	2023..3228	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	DAPZPL010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.29, whole genome shotgun sequence	23176..23502	enterobacteriales	IncHI2A	99.37	630 / 630	DAPZPL010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.29, whole genome shotgun sequence	38370..38999		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAPZPL010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.23, whole genome shotgun sequence	72172..72313		enterobacteriales	IncW	100	243 / 243	DAPZPL010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.33, whole genome shotgun sequence	10934..11176		enterobacteriales	IncW	100	243 / 243	DAPZPL010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.guided.37, whole genome shotgun sequence	4439..4681		enterobacteriales	IncY	99.74	765 / 765	DAPZPL010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Derby strain S414 isolate S414_swine_DK_2018 SAMEA113940708-rid19586193.denovo.21, whole genome shotgun sequence	24256..25020																				avrA	DAPZPL010000002.1	223954..224823	99.655	870	0						
GCA_032340155.1_PDT001912846.1_genomic.fna	Salmonella_enterica	0.5219	370.126 KB	5	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNHZJ010000004.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325479 SAMN37661729-rid19586163.denovo.04, whole genome shotgun sequence	252455..252892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHZJ010000026.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325479 SAMN37661729-rid19586163.denovo.29, whole genome shotgun sequence	7785..8621	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNHZJ010000026.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325479 SAMN37661729-rid19586163.denovo.29, whole genome shotgun sequence	8621..9423	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNHZJ010000026.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325479 SAMN37661729-rid19586163.denovo.29, whole genome shotgun sequence	8621..9424	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNHZJ010000026.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325479 SAMN37661729-rid19586163.denovo.29, whole genome shotgun sequence	8621..9424	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNHZJ010000026.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325479 SAMN37661729-rid19586163.denovo.29, whole genome shotgun sequence	8621..9424	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNHZJ010000044.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325479 SAMN37661729-rid19586163.guided.16, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHZJ010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325479 SAMN37661729-rid19586163.guided.32, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNHZJ010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325479 SAMN37661729-rid19586163.guided.32, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNHZJ010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325479 SAMN37661729-rid19586163.guided.32, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNHZJ010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325479 SAMN37661729-rid19586163.guided.32, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNHZJ010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325479 SAMN37661729-rid19586163.guided.32, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNHZJ010000026.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325479 SAMN37661729-rid19586163.denovo.29, whole genome shotgun sequence	893..2092	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNHZJ010000048.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325479 SAMN37661729-rid19586163.guided.33, whole genome shotgun sequence	959..2158	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	96.1	154 / 154	ABNHZJ010000032.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325479 SAMN37661729-rid19586163.denovo.37, whole genome shotgun sequence	374..527																																																						avrA	ABNHZJ010000001.1	573598..574467	99.655	870	0						
GCA_032340175.1_PDT001912845.1_genomic.fna	Salmonella_enterica	0.5208	322.45 KB	5	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNHZK010000001.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325484 SAMN37661727-rid19586153.denovo.01, whole genome shotgun sequence	779764..780201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNHZK010000034.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325484 SAMN37661727-rid19586153.guided.20, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNHZK010000024.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325484 SAMN37661727-rid19586153.denovo.27, whole genome shotgun sequence	239..369	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNHZK010000018.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325484 SAMN37661727-rid19586153.denovo.18, whole genome shotgun sequence	69150..69291																																																avrA	ABNHZK010000005.1	140114..140983	99.425	870	0						
GCA_032340195.1_PDT001912843.1_genomic.fna	Salmonella_enterica	0.5224	214.056 KB	7	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHZL010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325483 SAMN37661726-rid19586133.denovo.01, whole genome shotgun sequence	493797..494234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHZL010000040.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325483 SAMN37661726-rid19586133.guided.30, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032340215.1_PDT001912842.1_genomic.fna	Salmonella_enterica	0.5207	208.808 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHZM010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNHZM010000034.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.denovo.36, whole genome shotgun sequence	12008..12799	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHZM010000034.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.denovo.36, whole genome shotgun sequence	12008..12799	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNHZM010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.denovo.44, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNHZM010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.denovo.44, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNHZM010000057.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.guided.28, whole genome shotgun sequence	12434..12871	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNHZM010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.guided.39, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHZM010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.guided.39, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	99.9	1026/1026	ABNHZM010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.guided.47, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNHZM010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.guided.47, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(4)-Ia	100	1026/1026	ABNHZM010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.guided.48, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNHZM010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.guided.48, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNHZM010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.denovo.43, whole genome shotgun sequence	3180..4393	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNHZM010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.guided.52, whole genome shotgun sequence	89..1302	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNHZM010000034.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.denovo.36, whole genome shotgun sequence	10664..11503	Sulfamethoxazole	U12338	sul1	100	840/840	ABNHZM010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.guided.39, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNHZM010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.denovo.33, whole genome shotgun sequence	1766..2965	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNHZM010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.guided.50, whole genome shotgun sequence	1797..2996	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNHZM010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.denovo.26, whole genome shotgun sequence	22996..23555	enterobacteriales	IncX1	98.94	377 / 377	ABNHZM010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325482 SAMN37661725-rid19586123.denovo.29, whole genome shotgun sequence	32325..32701																																																avrA	ABNHZM010000002.1	93814..94683	99.655	870	0						
GCA_032340235.1_PDT001912841.1_genomic.fna	Salmonella_enterica	0.5213	194.291 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNHZN010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325481 SAMN37661724-rid19586113.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNHZN010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325481 SAMN37661724-rid19586113.denovo.42, whole genome shotgun sequence	12004..12795	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHZN010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325481 SAMN37661724-rid19586113.denovo.42, whole genome shotgun sequence	12004..12795	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNHZN010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325481 SAMN37661724-rid19586113.guided.37, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNHZN010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325481 SAMN37661724-rid19586113.guided.41, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNHZN010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325481 SAMN37661724-rid19586113.guided.41, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNHZN010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325481 SAMN37661724-rid19586113.denovo.42, whole genome shotgun sequence	10660..11499	Sulfamethoxazole	U12338	sul1	100	840/840	ABNHZN010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325481 SAMN37661724-rid19586113.guided.41, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNHZN010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325481 SAMN37661724-rid19586113.denovo.34, whole genome shotgun sequence	1806..3005	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNHZN010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325481 SAMN37661724-rid19586113.guided.36, whole genome shotgun sequence	850..2049	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNHZN010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325481 SAMN37661724-rid19586113.denovo.38, whole genome shotgun sequence	9109..9668																																																						avrA	ABNHZN010000002.1	94795..95664	99.655	870	0						
GCA_032340255.1_PDT001912840.1_genomic.fna	Salmonella_enterica	0.5217	370.126 KB	4	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNHZO010000001.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325480 SAMN37661723-rid19586103.denovo.01, whole genome shotgun sequence	681260..681697	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHZO010000022.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325480 SAMN37661723-rid19586103.denovo.25, whole genome shotgun sequence	7807..8643	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNHZO010000022.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325480 SAMN37661723-rid19586103.denovo.25, whole genome shotgun sequence	8643..9445	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNHZO010000022.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325480 SAMN37661723-rid19586103.denovo.25, whole genome shotgun sequence	8643..9446	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNHZO010000022.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325480 SAMN37661723-rid19586103.denovo.25, whole genome shotgun sequence	8643..9446	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNHZO010000022.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325480 SAMN37661723-rid19586103.denovo.25, whole genome shotgun sequence	8643..9446	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNHZO010000037.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325480 SAMN37661723-rid19586103.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHZO010000039.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325480 SAMN37661723-rid19586103.guided.28, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNHZO010000039.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325480 SAMN37661723-rid19586103.guided.28, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNHZO010000039.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325480 SAMN37661723-rid19586103.guided.28, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNHZO010000039.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325480 SAMN37661723-rid19586103.guided.28, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNHZO010000039.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325480 SAMN37661723-rid19586103.guided.28, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNHZO010000022.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325480 SAMN37661723-rid19586103.denovo.25, whole genome shotgun sequence	915..2114	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNHZO010000040.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325480 SAMN37661723-rid19586103.guided.29, whole genome shotgun sequence	448..1647	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	96.1	154 / 154	ABNHZO010000026.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325480 SAMN37661723-rid19586103.denovo.31, whole genome shotgun sequence	483..636																																																						avrA	ABNHZO010000003.1	573274..574143	99.655	870	0						
GCA_032340275.1_PDT001912839.1_genomic.fna	Salmonella_enterica	0.5209	284.076 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNHZP010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325478 SAMN37661580-rid19586093.denovo.01, whole genome shotgun sequence	293268..293705	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNHZP010000032.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325478 SAMN37661580-rid19586093.guided.18, whole genome shotgun sequence	20586..21023	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNHZP010000022.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325478 SAMN37661580-rid19586093.denovo.24, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNHZP010000023.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325478 SAMN37661580-rid19586093.denovo.26, whole genome shotgun sequence	3408..3669																																																avrA	ABNHZP010000002.1	553499..554368	99.54	870	0						
GCA_032340295.1_PDT001912838.1_genomic.fna	Salmonella_enterica	0.5212	436.306 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHZQ010000001.1 Salmonella enterica strain FDA1197180-S004-007 SAMN37661576-rid19586083.denovo.01, whole genome shotgun sequence	561993..562430	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNHZQ010000026.1 Salmonella enterica strain FDA1197180-S004-007 SAMN37661576-rid19586083.guided.12, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNHZQ010000020.1 Salmonella enterica strain FDA1197180-S004-007 SAMN37661576-rid19586083.denovo.23, whole genome shotgun sequence	3981..4111																																																						avrA	ABNHZQ010000010.1	175891..176759	99.195	870	0						
GCA_032340335.1_PDT001912837.1_genomic.fna	Salmonella_enterica	0.5206	226.091 KB	8	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	ColRNAI,IncFIB(AP001918)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHZR010000014.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325476 SAMN37661578-rid19586073.denovo.14, whole genome shotgun sequence	81026..81463	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNHZR010000065.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325476 SAMN37661578-rid19586073.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	91.07	112 / 130	ABNHZR010000050.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325476 SAMN37661578-rid19586073.denovo.53, whole genome shotgun sequence	2006..2117	enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNHZR010000030.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325476 SAMN37661578-rid19586073.denovo.31, whole genome shotgun sequence	1834..2515																																																avrA	ABNHZR010000001.1	103726..104595	98.966	870	0						
GCA_032340355.1_PDT001912835.1_genomic.fna	Salmonella_enterica	0.5207	381.312 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,sul2,sul2,tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNHZT010000004.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.denovo.04, whole genome shotgun sequence	159422..159859	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHZT010000026.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.denovo.27, whole genome shotgun sequence	1665..2501	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNHZT010000026.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.denovo.27, whole genome shotgun sequence	2501..3304	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNHZT010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.guided.28, whole genome shotgun sequence	17458..18294	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNHZT010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.guided.28, whole genome shotgun sequence	16655..17458	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNHZT010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.guided.33, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNHZT010000028.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.denovo.30, whole genome shotgun sequence	12540..13685	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNHZT010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.guided.34, whole genome shotgun sequence	3881..5026	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNHZT010000050.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.guided.41, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNHZT010000050.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.guided.41, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNHZT010000050.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.guided.41, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNHZT010000048.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.guided.37, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNHZT010000026.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.denovo.27, whole genome shotgun sequence	3365..4180	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNHZT010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.guided.28, whole genome shotgun sequence	15779..16594	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNHZT010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.guided.40, whole genome shotgun sequence	965..2239	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																			enterobacteriales	IncC	100	417 / 417	ABNHZT010000024.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.denovo.25, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNHZT010000019.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.denovo.20, whole genome shotgun sequence	16891..17150		enterobacteriales	IncX1	98.66	374 / 374	ABNHZT010000022.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325473 SAMN37661577-rid19586053.denovo.23, whole genome shotgun sequence	8565..8938																																									avrA	ABNHZT010000001.1	505438..506306	99.54	870	0						
GCA_032340375.1_PDT001912832.1_genomic.fna	Salmonella_enterica	0.5222	76.759 KB	23	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHZU010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325448 SAMN37661467-rid19586023.denovo.002, whole genome shotgun sequence	83545..83982	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHZU010000139.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325448 SAMN37661467-rid19586023.guided.087, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNHZU010000106.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325448 SAMN37661467-rid19586023.denovo.109, whole genome shotgun sequence	3229..3380																																																						avrA	ABNHZU010000010.1	95312..96180	99.77	870	0						
GCA_032340415.1_PDT001912831.1_genomic.fna	Salmonella_enterica	0.5215	113.597 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHZV010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325442 SAMN37661264-rid19586003.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHZV010000079.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325442 SAMN37661264-rid19586003.guided.45, whole genome shotgun sequence	24942..25379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNHZV010000059.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325442 SAMN37661264-rid19586003.denovo.62, whole genome shotgun sequence	3229..3380																																																						avrA	ABNHZV010000005.1	122817..123685	99.77	870	0						
GCA_032340455.1_PDT001912829.1_genomic.fna	Salmonella_enterica	0.5224	60.893 KB	26	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHZX010000067.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325446 SAMN37661269-rid19585983.denovo.068, whole genome shotgun sequence	12463..12900	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHZX010000139.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325446 SAMN37661269-rid19585983.guided.067, whole genome shotgun sequence	14159..14596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNHZX010000110.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325446 SAMN37661269-rid19585983.denovo.113, whole genome shotgun sequence	3229..3380																																																						avrA	ABNHZX010000008.1	101010..101878	99.77	870	0						
GCA_032340475.1_PDT001912828.1_genomic.fna	Salmonella_enterica	0.521	136.74 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNHZY010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325443 SAMN37661266-rid19585973.denovo.01, whole genome shotgun sequence	145433..145870	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNHZY010000076.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325443 SAMN37661266-rid19585973.guided.32, whole genome shotgun sequence	31738..32175	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNHZY010000058.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325443 SAMN37661266-rid19585973.denovo.61, whole genome shotgun sequence	3229..3380																																																						avrA	ABNHZY010000004.1	156369..157237	99.77	870	0						
GCA_032340495.1_PDT001912824.1_genomic.fna	Salmonella_enterica	0.5218	86.871 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIAC010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325445 SAMN37661268-rid19585933.denovo.001, whole genome shotgun sequence	20924..21361	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIAC010000110.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325445 SAMN37661268-rid19585933.guided.038, whole genome shotgun sequence	26463..26900	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNIAC010000085.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325445 SAMN37661268-rid19585933.denovo.088, whole genome shotgun sequence	3229..3380																																																						avrA	ABNIAC010000009.1	99963..100831	99.77	870	0						
GCA_032340525.1_PDT001912826.1_genomic.fna	Salmonella_enterica	0.5217	102.986 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIAA010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325444 SAMN37661267-rid19585953.denovo.002, whole genome shotgun sequence	52365..52802	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIAA010000100.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325444 SAMN37661267-rid19585953.guided.060, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNIAA010000072.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325444 SAMN37661267-rid19585953.denovo.075, whole genome shotgun sequence	3229..3380																																																						avrA	ABNIAA010000005.1	108205..109073	99.77	870	0						
GCA_032340555.1_PDT001912825.1_genomic.fna	Salmonella_enterica	0.5215	88.391 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIAB010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325447 SAMN37661270-rid19585943.denovo.001, whole genome shotgun sequence	83724..84161	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIAB010000107.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325447 SAMN37661270-rid19585943.guided.026, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNIAB010000076.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325447 SAMN37661270-rid19585943.denovo.079, whole genome shotgun sequence	3229..3380																																																						avrA	ABNIAB010000007.1	100998..101866	99.77	870	0						
GCA_032340595.1_PDT001912820.1_genomic.fna	Salmonella_enterica	0.5213	142.51 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIAF010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325441 SAMN37661262-rid19585903.denovo.02, whole genome shotgun sequence	12479..12916	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIAF010000079.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325441 SAMN37661262-rid19585903.guided.48, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNIAF010000060.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325441 SAMN37661262-rid19585903.denovo.63, whole genome shotgun sequence	3229..3380																																																						avrA	ABNIAF010000003.1	121637..122505	99.77	870	0						
GCA_032340615.1_PDT001912823.1_genomic.fna	Salmonella_enterica	0.5209	184.929 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIAD010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325440 SAMN37661271-rid19585923.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIAD010000058.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325440 SAMN37661271-rid19585923.guided.28, whole genome shotgun sequence	20625..21062	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNIAD010000042.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325440 SAMN37661271-rid19585923.denovo.45, whole genome shotgun sequence	3229..3380																																																						avrA	ABNIAD010000005.1	108456..109324	99.77	870	0						
GCA_032340655.1_PDT001912817.1_genomic.fna	Salmonella_enterica	0.5211	120.424 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIAI010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325439 SAMN37661202-rid19585873.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIAI010000077.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325439 SAMN37661202-rid19585873.guided.42, whole genome shotgun sequence	8082..8519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNIAI010000059.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325439 SAMN37661202-rid19585873.denovo.62, whole genome shotgun sequence	3229..3380																																																						avrA	ABNIAI010000003.1	123342..124210	99.77	870	0						
GCA_032340675.1_PDT001912816.1_genomic.fna	Salmonella_enterica	0.5205	178.174 KB	10	aroC_92,dnaN_125,hemD_78,hisD_128,purE_138,sucA_9,thrA_141	463	3,10:e,h:l,w	3	aac(6')-Iaa,aac(2')-IIa,aac(2')-IIa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_92	dnaN	100	100	dnaN_125	hemD	100	100	hemD_78	hisD	100	100	hisD_128	purE	100	100	purE_138	sucA	100	100	sucA_9	thrA	100	100	thrA_141	3,10	e,h	l,w	Salmonella enterica subspecies enterica (subspecies I)	Meleagridis		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNIAJ010000001.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12325438 SAMN37661201-rid19585863.denovo.01, whole genome shotgun sequence	314259..314696	Amikacin, Tobramycin	NC_003197	aac(2')-IIa	98.72	783/783	ABNIAJ010000013.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12325438 SAMN37661201-rid19585863.denovo.13, whole genome shotgun sequence	21130..21912	Kasugamycin	AB669090	aac(2')-IIa	98.72	783/783	ABNIAJ010000064.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12325438 SAMN37661201-rid19585863.guided.33, whole genome shotgun sequence	561..1343	Kasugamycin	AB669090	aac(6')-Iaa	98.86	438/438	ABNIAJ010000066.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12325438 SAMN37661201-rid19585863.guided.37, whole genome shotgun sequence	15883..16320	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNIAJ010000003.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12325438 SAMN37661201-rid19585863.denovo.03, whole genome shotgun sequence	158254..158676	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNIAJ010000067.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12325438 SAMN37661201-rid19585863.guided.41, whole genome shotgun sequence	21554..21976	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIAJ010000005.1	125130..125999	98.851	870	0						
GCA_032340695.1_PDT001912815.1_genomic.fna	Salmonella_enterica	0.5212	95.871 KB	15	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:f,g:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	f,g	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNIAK010000014.1 Salmonella enterica subsp. enterica strain FSIS12325437 SAMN37661200-rid19585853.denovo.014, whole genome shotgun sequence	15529..15966	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNIAK010000125.1 Salmonella enterica subsp. enterica strain FSIS12325437 SAMN37661200-rid19585853.guided.060, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNIAK010000091.1 Salmonella enterica subsp. enterica strain FSIS12325437 SAMN37661200-rid19585853.denovo.094, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABNIAK010000089.1 Salmonella enterica subsp. enterica strain FSIS12325437 SAMN37661200-rid19585853.denovo.092, whole genome shotgun sequence	3175..3285		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNIAK010000059.1 Salmonella enterica subsp. enterica strain FSIS12325437 SAMN37661200-rid19585853.denovo.061, whole genome shotgun sequence	2005..2146																																									avrA	ABNIAK010000001.1	158921..159790	99.425	870	0						
GCA_032340735.1_PDT001912812.1_genomic.fna	Salmonella_enterica	0.5215	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIAL010000001.1 Salmonella enterica strain PNUSAS388313 SAMN37658799-rid19585823.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIAL010000028.1 Salmonella enterica strain PNUSAS388313 SAMN37658799-rid19585823.guided.19, whole genome shotgun sequence	11174..11611	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIAL010000018.1 Salmonella enterica strain PNUSAS388313 SAMN37658799-rid19585823.denovo.18, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABNIAL010000019.1 Salmonella enterica strain PNUSAS388313 SAMN37658799-rid19585823.denovo.21, whole genome shotgun sequence	3392..3653																																																avrA	ABNIAL010000002.1	553636..554505	99.54	870	0						
GCA_032340755.1_PDT001912811.1_genomic.fna	Salmonella_enterica	0.5212	270.252 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNIAM010000004.1 Salmonella enterica strain PNUSAS388324 SAMN37658839-rid19585813.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																avrA	ABNIAM010000003.1	174650..175518	100	869	0						
GCA_032340795.1_PDT001912810.1_genomic.fna	Salmonella_enterica	0.5211	186.396 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIAO010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325464 SAMN37658886-rid19585803.denovo.01, whole genome shotgun sequence	145463..145900	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIAO010000064.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325464 SAMN37658886-rid19585803.guided.39, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNIAO010000043.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325464 SAMN37658886-rid19585803.denovo.46, whole genome shotgun sequence	3229..3380																																																						avrA	ABNIAO010000011.1	94139..95007	99.77	870	0						
GCA_032340835.1_PDT001912958.1_genomic.fna	Salmonella_enterica	0.5212	680.381 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	4	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,mph(A),erm(B),mph(A),erm(B)	1	parC_p.T57S	1	IncFII	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNIAR010000001.1 Salmonella enterica strain PNUSAS388360 SAMN37664118-rid19587263.denovo.01, whole genome shotgun sequence	516539..516976	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNIAR010000022.1 Salmonella enterica strain PNUSAS388360 SAMN37664118-rid19587263.guided.14, whole genome shotgun sequence	2078..2515	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNIAR010000011.1 Salmonella enterica strain PNUSAS388360 SAMN37664118-rid19587263.denovo.11, whole genome shotgun sequence	19663..20523	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNIAR010000025.1 Salmonella enterica strain PNUSAS388360 SAMN37664118-rid19587263.guided.17, whole genome shotgun sequence	7676..8536	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	903/906	ABNIAR010000011.1 Salmonella enterica strain PNUSAS388360 SAMN37664118-rid19587263.denovo.11, whole genome shotgun sequence	14654..15556	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	erm(B)	99.73	738/738	ABNIAR010000011.1 Salmonella enterica strain PNUSAS388360 SAMN37664118-rid19587263.denovo.11, whole genome shotgun sequence	12735..13472	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	JN899585	mph(A)	100	903/906	ABNIAR010000025.1 Salmonella enterica strain PNUSAS388360 SAMN37664118-rid19587263.guided.17, whole genome shotgun sequence	2667..3569	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	erm(B)	99.73	738/738	ABNIAR010000025.1 Salmonella enterica strain PNUSAS388360 SAMN37664118-rid19587263.guided.17, whole genome shotgun sequence	748..1485	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	JN899585																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII	100	261 / 261	ABNIAR010000011.1 Salmonella enterica strain PNUSAS388360 SAMN37664118-rid19587263.denovo.11, whole genome shotgun sequence	25526..25786																																																						avrA	ABNIAR010000002.1	544224..545092	99.425	870	0						
GCA_032340855.1_PDT001912804.1_genomic.fna	Salmonella_enterica	0.5232	77.366 KB	21	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIAQ010000003.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325432 SAMN37658830-rid19585743.denovo.003, whole genome shotgun sequence	11353..11790	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNIAQ010000144.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325432 SAMN37658830-rid19585743.guided.097, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIAQ010000009.1	97926..98795	99.54	870	0						
GCA_032340875.1_PDT001912954.1_genomic.fna	Salmonella_enterica	0.5213	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIAS010000001.1 Salmonella enterica strain PNUSAS388364 SAMN37664088-rid19587223.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIAS010000026.1 Salmonella enterica strain PNUSAS388364 SAMN37664088-rid19587223.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIAS010000016.1 Salmonella enterica strain PNUSAS388364 SAMN37664088-rid19587223.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNIAS010000017.1 Salmonella enterica strain PNUSAS388364 SAMN37664088-rid19587223.denovo.20, whole genome shotgun sequence	3438..3699																																																avrA	ABNIAS010000002.1	553636..554505	99.54	870	0						
GCA_032340895.1_PDT001912950.1_genomic.fna	Salmonella_enterica	0.5228	241.701 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIAT010000001.1 Salmonella enterica strain PNUSAS388369 SAMN37664093-rid19587183.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIAT010000056.1 Salmonella enterica strain PNUSAS388369 SAMN37664093-rid19587183.guided.30, whole genome shotgun sequence	8806..9243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIAT010000005.1	66915..67784	99.655	870	0						
GCA_032340915.1_PDT001912941.1_genomic.fna	Salmonella_enterica	0.5213	465.757 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIAU010000001.1 Salmonella enterica strain PNUSAS388473 SAMN37663439-rid19587093.denovo.01, whole genome shotgun sequence	1339140..1339577	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIAU010000022.1 Salmonella enterica strain PNUSAS388473 SAMN37663439-rid19587093.guided.12, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIAU010000008.1	140215..141083	99.195	870	0						
GCA_032341115.1_PDT001912807.1_genomic.fna	Salmonella_enterica	0.5211	328.279 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIBG010000002.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.denovo.02, whole genome shotgun sequence	159410..159847	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIBG010000025.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.denovo.25, whole genome shotgun sequence	321..1157	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIBG010000025.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.denovo.25, whole genome shotgun sequence	1157..1960	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNIBG010000037.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.denovo.46, whole genome shotgun sequence	137..952	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	V00359	aac(6')-Iaa	98.63	438/438	ABNIBG010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.guided.29, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIBG010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.guided.38, whole genome shotgun sequence	3272..4108	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIBG010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.guided.38, whole genome shotgun sequence	2469..3272	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNIBG010000051.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.guided.44, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	V00359	blaCMY-2	100	1146/1146	ABNIBG010000025.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.denovo.25, whole genome shotgun sequence	31177..32322	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNIBG010000033.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.denovo.37, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNIBG010000033.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.denovo.37, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNIBG010000033.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.denovo.37, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNIBG010000043.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.guided.27, whole genome shotgun sequence	26789..27934	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNIBG010000050.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.guided.43, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNIBG010000050.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.guided.43, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNIBG010000050.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.guided.43, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNIBG010000029.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.denovo.32, whole genome shotgun sequence	2703..3916	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIBG010000048.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.guided.41, whole genome shotgun sequence	780..1993	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNIBG010000025.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.denovo.25, whole genome shotgun sequence	2021..2836	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIBG010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.guided.38, whole genome shotgun sequence	1593..2408	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNIBG010000029.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.denovo.32, whole genome shotgun sequence	828..2102	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNIBG010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.guided.42, whole genome shotgun sequence	869..2143	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																														gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNIBG010000023.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.denovo.23, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNIBG010000021.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.denovo.21, whole genome shotgun sequence	16913..17172		enterobacteriales	IncX1	98.66	374 / 374	ABNIBG010000021.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325471 SAMN37659634-rid19585773.denovo.21, whole genome shotgun sequence	52767..53140																																									avrA	ABNIBG010000006.1	174456..175324	99.54	870	0						
GCA_032341195.1_PDT001912803.1_genomic.fna	Salmonella_enterica	0.5215	181.078 KB	10	aroC_48,dnaN_108,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	356	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_108	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIBH010000007.1 Salmonella enterica strain PNUSAS388325 SAMN37658793-rid19585733.denovo.07, whole genome shotgun sequence	37958..38395	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIBH010000066.1 Salmonella enterica strain PNUSAS388325 SAMN37658793-rid19585733.guided.41, whole genome shotgun sequence	2180..2617	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032341255.1_PDT001912799.1_genomic.fna	Salmonella_enterica	0.5212	430.457 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIBL010000002.1 Salmonella enterica strain PNUSAS388317 SAMN37658836-rid19585693.denovo.02, whole genome shotgun sequence	385684..386121	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIBL010000046.1 Salmonella enterica strain PNUSAS388317 SAMN37658836-rid19585693.guided.22, whole genome shotgun sequence	12401..12838	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIBL010000010.1	95018..95888	99.196	871	0						
GCA_032341275.1_PDT001912798.1_genomic.fna	Salmonella_enterica	0.523	717.513 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIBM010000001.1 Salmonella enterica strain PNUSAS388322 SAMN37658833-rid19585683.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIBM010000033.1 Salmonella enterica strain PNUSAS388322 SAMN37658833-rid19585683.guided.20, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032341295.1_PDT001912797.1_genomic.fna	Salmonella_enterica	0.5224	474.019 KB	3	aroC_16,dnaN_16,hemD_20,hisD_1044,purE_8,sucA_12,thrA_18	4856	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_1044	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIBN010000001.1 Salmonella enterica strain PNUSAS388319 SAMN37658796-rid19585673.denovo.01, whole genome shotgun sequence	658214..658651	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIBN010000029.1 Salmonella enterica strain PNUSAS388319 SAMN37658796-rid19585673.guided.22, whole genome shotgun sequence	91..528	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIBN010000002.1	510238..511104	98.966	870	0						
GCA_032341315.1_PDT001912796.1_genomic.fna	Salmonella_enterica	0.5213	187.53 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIBO010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325467 SAMN37658889-rid19585663.denovo.01, whole genome shotgun sequence	145566..146003	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIBO010000065.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325467 SAMN37658889-rid19585663.guided.39, whole genome shotgun sequence	14171..14608	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNIBO010000047.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325467 SAMN37658889-rid19585663.denovo.50, whole genome shotgun sequence	3229..3380																																																						avrA	ABNIBO010000005.1	156369..157237	99.77	870	0						
GCA_032341335.1_PDT001912795.1_genomic.fna	Salmonella_enterica	0.5213	351.732 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,floR,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIBP010000003.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325461 SAMN37658883-rid19585653.denovo.03, whole genome shotgun sequence	159375..159812	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIBP010000024.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325461 SAMN37658883-rid19585653.denovo.26, whole genome shotgun sequence	6991..7827	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIBP010000024.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325461 SAMN37658883-rid19585653.denovo.26, whole genome shotgun sequence	6188..6991	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNIBP010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325461 SAMN37658883-rid19585653.guided.27, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIBP010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325461 SAMN37658883-rid19585653.guided.28, whole genome shotgun sequence	5872..6708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIBP010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325461 SAMN37658883-rid19585653.guided.28, whole genome shotgun sequence	5069..5872	Streptomycin	AF321551	floR	98.19	1214/1215	ABNIBP010000029.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325461 SAMN37658883-rid19585653.denovo.33, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNIBP010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325461 SAMN37658883-rid19585653.guided.35, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIBP010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325461 SAMN37658883-rid19585653.guided.36, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNIBP010000024.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325461 SAMN37658883-rid19585653.denovo.26, whole genome shotgun sequence	5312..6127	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIBP010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325461 SAMN37658883-rid19585653.guided.28, whole genome shotgun sequence	4193..5008	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNIBP010000024.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325461 SAMN37658883-rid19585653.denovo.26, whole genome shotgun sequence	9088..10362	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNIBP010000048.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325461 SAMN37658883-rid19585653.guided.37, whole genome shotgun sequence	570..1844	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																													gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNIBP010000020.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325461 SAMN37658883-rid19585653.denovo.20, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNIBP010000017.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325461 SAMN37658883-rid19585653.denovo.17, whole genome shotgun sequence	16913..17172		enterobacteriales	IncX1	98.66	374 / 374	ABNIBP010000017.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325461 SAMN37658883-rid19585653.denovo.17, whole genome shotgun sequence	52767..53140																																									avrA	ABNIBP010000006.1	173801..174669	99.54	870	0						
GCA_032341365.1_PDT001912794.1_genomic.fna	Salmonella_enterica	0.5204	353.44 KB	6	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIBS010000002.1 Salmonella enterica strain PNUSAS388312 SAMN37658827-rid19585643.denovo.02, whole genome shotgun sequence	453340..453777	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNIBS010000037.1 Salmonella enterica strain PNUSAS388312 SAMN37658827-rid19585643.guided.19, whole genome shotgun sequence	34574..35011	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIBS010000001.1	600316..601185	99.425	870	0						
GCA_032341475.1_PDT001912787.1_genomic.fna	Salmonella_enterica	0.521	289.548 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIBW010000001.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325472 SAMN37659637-rid19585393.denovo.01, whole genome shotgun sequence	477283..477720	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIBW010000028.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325472 SAMN37659637-rid19585393.guided.18, whole genome shotgun sequence	19816..20253	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIBW010000010.1	181804..182672	99.195	870	0						
GCA_032341495.1_PDT001912293.1_genomic.fna	Salmonella_enterica	0.5207	591.234 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNIBY010000001.1 Salmonella enterica strain PNUSAS388396 SAMN37657751-rid19580703.denovo.01, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNIBY010000029.1 Salmonella enterica strain PNUSAS388396 SAMN37657751-rid19580703.guided.12, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNIBY010000013.1 Salmonella enterica strain PNUSAS388396 SAMN37657751-rid19580703.denovo.14, whole genome shotgun sequence	34930..35463																																																						avrA	ABNIBY010000003.1	491322..492190	99.425	870	0						
GCA_032341515.1_PDT001830404.1_genomic.fna	Salmonella_enterica	0.5205	223.167 KB	6	aroC_5,dnaN_14,hemD_21,hisD_9,purE_6,sucA_12,thrA_17	49	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIBZ010000001.1 Salmonella enterica strain PNUSAS366990 SAMN36726202-rid18900103.denovo.01, whole genome shotgun sequence	639713..640150	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIBZ010000052.1 Salmonella enterica strain PNUSAS366990 SAMN36726202-rid18900103.guided.11, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNIBZ010000018.1 Salmonella enterica strain PNUSAS366990 SAMN36726202-rid18900103.denovo.19, whole genome shotgun sequence	70385..70526																																																						avrA	ABNIBZ010000003.1	39482..40351	99.54	870	0						
GCA_032341535.1_PDT001912786.1_genomic.fna	Salmonella_enterica	0.5209	297.604 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIBX010000002.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.denovo.02, whole genome shotgun sequence	159441..159878	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIBX010000023.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.denovo.24, whole genome shotgun sequence	2501..3337	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIBX010000023.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.denovo.24, whole genome shotgun sequence	3337..4140	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNIBX010000037.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.denovo.46, whole genome shotgun sequence	135..950	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	V00359	aac(6')-Iaa	98.63	438/438	ABNIBX010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.guided.29, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIBX010000048.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.guided.40, whole genome shotgun sequence	2086..2922	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIBX010000048.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.guided.40, whole genome shotgun sequence	1283..2086	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNIBX010000053.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.guided.45, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	V00359	blaCMY-2	100	1146/1146	ABNIBX010000023.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.denovo.24, whole genome shotgun sequence	33357..34502	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNIBX010000034.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.denovo.37, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNIBX010000034.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.denovo.37, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNIBX010000034.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.denovo.37, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNIBX010000050.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.guided.42, whole genome shotgun sequence	224..1369	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNIBX010000052.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.guided.44, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNIBX010000052.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.guided.44, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNIBX010000052.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.guided.44, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNIBX010000032.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.denovo.35, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIBX010000051.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.guided.43, whole genome shotgun sequence	296..1509	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNIBX010000023.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.denovo.24, whole genome shotgun sequence	4201..5016	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIBX010000048.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.guided.40, whole genome shotgun sequence	407..1222	Sulfamethoxazole	AY034138	tet(A)	100	1240/1275	ABNIBX010000023.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.denovo.24, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNIBX010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.guided.41, whole genome shotgun sequence	841..2115	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncC	100	417 / 417	ABNIBX010000029.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.denovo.32, whole genome shotgun sequence	3264..3680	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNIBX010000020.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.denovo.21, whole genome shotgun sequence	16912..17171		enterobacteriales	IncX1	98.66	374 / 374	ABNIBX010000020.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325470 SAMN37659631-rid19584093.denovo.21, whole genome shotgun sequence	52766..53139																																									avrA	ABNIBX010000005.1	173549..174417	99.54	870	0						
GCA_032341555.1_PDT001830403.1_genomic.fna	Salmonella_enterica	0.5217	213.812 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNICA010000002.1 Salmonella enterica strain PNUSAS366999 SAMN36726200-rid18896683.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNICA010000071.1 Salmonella enterica strain PNUSAS366999 SAMN36726200-rid18896683.guided.47, whole genome shotgun sequence	3558..3995	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNICA010000050.1 Salmonella enterica strain PNUSAS366999 SAMN36726200-rid18896683.denovo.53, whole genome shotgun sequence	1251..1381	enterobacteriales	IncFIB(S)	100	643 / 643	ABNICA010000042.1 Salmonella enterica strain PNUSAS366999 SAMN36726200-rid18896683.denovo.44, whole genome shotgun sequence	665..1307		enterobacteriales	IncFII(S)	100	262 / 262	ABNICA010000032.1 Salmonella enterica strain PNUSAS366999 SAMN36726200-rid18896683.denovo.32, whole genome shotgun sequence	20996..21257																																									avrA	ABNICA010000007.1	39863..40731	100	869	0						
GCA_032341595.1_PDT001830402.1_genomic.fna	Salmonella_enterica	0.5213	478.496 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNICB010000001.1 Salmonella enterica strain PNUSAS366996 SAMN36726201-rid18897543.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNICB010000027.1 Salmonella enterica strain PNUSAS366996 SAMN36726201-rid18897543.guided.16, whole genome shotgun sequence	17883..18320	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNICB010000016.1 Salmonella enterica strain PNUSAS366996 SAMN36726201-rid18897543.denovo.17, whole genome shotgun sequence	6838..7480	enterobacteriales	IncFII(S)	100	262 / 262	ABNICB010000018.1 Salmonella enterica strain PNUSAS366996 SAMN36726201-rid18897543.denovo.21, whole genome shotgun sequence	3370..3631																																																avrA	ABNICB010000002.1	553493..554362	99.54	870	0						
GCA_032341615.1_PDT001830400.1_genomic.fna	Salmonella_enterica	0.5212	359.475 KB	6	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNICD010000002.1 Salmonella enterica strain PNUSAS366998 SAMN36726199-rid18897523.denovo.02, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNICD010000053.1 Salmonella enterica strain PNUSAS366998 SAMN36726199-rid18897523.guided.29, whole genome shotgun sequence	10135..10572	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNICD010000012.1	101941..102810	99.655	870	0						
GCA_032341635.1_PDT001830401.1_genomic.fna	Salmonella_enterica	0.5215	231.447 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNICC010000001.1 Salmonella enterica strain PNUSAS366994 SAMN36726207-rid18897533.denovo.01, whole genome shotgun sequence	520687..521124	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNICC010000050.1 Salmonella enterica strain PNUSAS366994 SAMN36726207-rid18897533.guided.34, whole genome shotgun sequence	2666..3103	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNICC010000018.1	39477..40345	99.195	870	0						
GCA_032341655.1_PDT001830399.1_genomic.fna	Salmonella_enterica	0.5218	273.33 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNICE010000002.1 Salmonella enterica strain PNUSAS366991 SAMN36726209-rid18898983.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNICE010000058.1 Salmonella enterica strain PNUSAS366991 SAMN36726209-rid18898983.guided.36, whole genome shotgun sequence	10083..10520	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNICE010000033.1 Salmonella enterica strain PNUSAS366991 SAMN36726209-rid18898983.denovo.35, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNICE010000031.1 Salmonella enterica strain PNUSAS366991 SAMN36726209-rid18898983.denovo.32, whole genome shotgun sequence	15642..15903																																																avrA	ABNICE010000003.1	209060..209928	100	869	0						
GCA_032341675.1_PDT001830398.1_genomic.fna	Salmonella_enterica	0.52	285.878 KB	7	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNICG010000011.1 Salmonella enterica strain PNUSAS366995 SAMN36726204-rid18897513.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNICG010000061.1 Salmonella enterica strain PNUSAS366995 SAMN36726204-rid18897513.guided.31, whole genome shotgun sequence	5396..5833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNICG010000028.1 Salmonella enterica strain PNUSAS366995 SAMN36726204-rid18897513.denovo.28, whole genome shotgun sequence	22357..22890	enterobacteriales	IncX1	98.4	374 / 374	ABNICG010000023.1 Salmonella enterica strain PNUSAS366995 SAMN36726204-rid18897513.denovo.23, whole genome shotgun sequence	6956..7329																																																avrA	ABNICG010000002.1	39344..40210	98.966	870	0						
GCA_032341695.1_PDT001830397.1_genomic.fna	Salmonella_enterica	0.5208	262.041 KB	8	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2	1	gyrA_p.S83F	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNICI010000001.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.denovo.01, whole genome shotgun sequence	159455..159892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNICI010000026.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.denovo.27, whole genome shotgun sequence	1768..2604	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNICI010000026.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.denovo.27, whole genome shotgun sequence	2604..3407	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNICI010000049.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.guided.28, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNICI010000050.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.guided.31, whole genome shotgun sequence	9100..9936	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNICI010000050.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.guided.31, whole genome shotgun sequence	8297..9100	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNICI010000055.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.guided.45, whole genome shotgun sequence	127..942	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	blaTEM-214	100	819/861	ABNICI010000030.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.denovo.34, whole genome shotgun sequence	3300..4118	Unknown Beta-lactam	KP050491	blaTEM-206	100	819/861	ABNICI010000030.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.denovo.34, whole genome shotgun sequence	3300..4118	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	819/861	ABNICI010000030.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.denovo.34, whole genome shotgun sequence	3300..4118	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNICI010000035.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.denovo.41, whole genome shotgun sequence	327..1472	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNICI010000053.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.guided.40, whole genome shotgun sequence	351..1496	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNICI010000054.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.guided.44, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNICI010000054.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.guided.44, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNICI010000054.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.guided.44, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNICI010000031.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.denovo.36, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNICI010000052.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.guided.35, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNICI010000026.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.denovo.27, whole genome shotgun sequence	3468..4283	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNICI010000050.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.guided.31, whole genome shotgun sequence	7421..8236	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																			gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNICI010000024.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.denovo.25, whole genome shotgun sequence	13108..13524	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNICI010000020.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.denovo.21, whole genome shotgun sequence	16913..17172		enterobacteriales	IncX1	98.66	374 / 374	ABNICI010000020.1 Salmonella enterica strain PNUSAS367000 SAMN36726203-rid18897503.denovo.21, whole genome shotgun sequence	52767..53140																																									avrA	ABNICI010000014.1	39484..40352	99.54	870	0						
GCA_032341775.1_PDT001830390.1_genomic.fna	Salmonella_enterica	0.5135	225.612 KB	8	aroC_33,dnaN_26,hemD_30,hisD_26,purE_21,sucA_32*,thrA_28	63*	60:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	99.8003992015968	100	sucA_32*	thrA	100	100	thrA_28	60	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 60:r:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNICM010000006.1 Salmonella enterica strain PNUSAS366988 SAMN36726102-rid18897473.denovo.06, whole genome shotgun sequence	165580..166017	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNICM010000078.1 Salmonella enterica strain PNUSAS366988 SAMN36726102-rid18897473.guided.30, whole genome shotgun sequence	39940..40377	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNICM010000008.1	121845..122714	96.322	870	0						
GCA_032341875.1_PDT001912955.1_genomic.fna	Salmonella_enterica	0.5208	249.008 KB	7	aroC_42,dnaN_169,hemD_48,hisD_149,purE_40,sucA_23,thrA_4	2388	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_169	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_40	sucA	100	100	sucA_23	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNICP010000005.1 Salmonella enterica strain PNUSAS388367 SAMN37664091-rid19587233.denovo.05, whole genome shotgun sequence	151942..152379	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNICP010000045.1 Salmonella enterica strain PNUSAS388367 SAMN37664091-rid19587233.guided.28, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNICP010000006.1 Salmonella enterica strain PNUSAS388367 SAMN37664091-rid19587233.denovo.06, whole genome shotgun sequence	262717..263250																																																						avrA	ABNICP010000001.1	177100..177968	99.31	870	0						
GCA_032341895.1_PDT001912946.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNICR010000001.1 Salmonella enterica strain PNUSAS388472 SAMN37663486-rid19587143.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNICR010000025.1 Salmonella enterica strain PNUSAS388472 SAMN37663486-rid19587143.guided.16, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNICR010000016.1 Salmonella enterica strain PNUSAS388472 SAMN37663486-rid19587143.denovo.18, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNICR010000013.1 Salmonella enterica strain PNUSAS388472 SAMN37663486-rid19587143.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNICR010000002.1	553636..554505	99.54	870	0						
GCA_032341915.1_PDT001912952.1_genomic.fna	Salmonella_enterica	0.521	226.08 KB	5	aroC_17,dnaN_2,hemD_10,hisD_166,purE_147,sucA_21,thrA_119	493	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_2	hemD	100	100	hemD_10	hisD	100	100	hisD_166	purE	100	100	purE_147	sucA	100	100	sucA_21	thrA	100	100	thrA_119	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNICQ010000001.1 Salmonella enterica strain PNUSAS388374 SAMN37664098-rid19587203.denovo.01, whole genome shotgun sequence	358593..359030	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNICQ010000055.1 Salmonella enterica strain PNUSAS388374 SAMN37664098-rid19587203.guided.24, whole genome shotgun sequence	42427..42864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNICQ010000002.1	149690..150559	99.655	870	0						
GCA_032341935.1_PDT001912945.1_genomic.fna	Salmonella_enterica	0.5208	475.818 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(p14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNICS010000001.1 Salmonella enterica strain PNUSAS388471 SAMN37663489-rid19587133.denovo.01, whole genome shotgun sequence	498159..498596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNICS010000026.1 Salmonella enterica strain PNUSAS388471 SAMN37663489-rid19587133.guided.16, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNICS010000014.1 Salmonella enterica strain PNUSAS388471 SAMN37663489-rid19587133.denovo.14, whole genome shotgun sequence	17040..17682	enterobacteriales	IncFII(p14)	92.02	263 / 262	ABNICS010000014.1 Salmonella enterica strain PNUSAS388471 SAMN37663489-rid19587133.denovo.14, whole genome shotgun sequence	33599..33857																																																avrA	ABNICS010000002.1	498369..499237	99.425	870	0						
GCA_032341955.1_PDT001912943.1_genomic.fna	Salmonella_enterica	0.5225	705.952 KB	2	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNICT010000001.1 Salmonella enterica strain PNUSAS388469 SAMN37663487-rid19587113.denovo.01, whole genome shotgun sequence	1115325..1115762	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNICT010000019.1 Salmonella enterica strain PNUSAS388469 SAMN37663487-rid19587113.guided.15, whole genome shotgun sequence	8806..9243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNICT010000002.1	553754..554623	99.77	870	0						
GCA_032342035.1_PDT001912925.1_genomic.fna	Salmonella_enterica	0.523	467.002 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNICY010000001.1 Salmonella enterica strain PNUSAS388468 SAMN37663442-rid19586933.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNICY010000028.1 Salmonella enterica strain PNUSAS388468 SAMN37663442-rid19586933.guided.19, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032342135.1_PDT001912923.1_genomic.fna	Salmonella_enterica	0.5219	611.486 KB	3	aroC_2,dnaN_2,hemD_9,hisD_7,purE_105,sucA_513,thrA_86	2462	7:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_9	hisD	100	100	hisD_7	purE	100	100	purE_105	sucA	100	100	sucA_513	thrA	100	100	thrA_86	7	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Potsdam		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNICZ010000001.1 Salmonella enterica strain PNUSAS388467 SAMN37663441-rid19586913.denovo.01, whole genome shotgun sequence	462091..462528	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNICZ010000025.1 Salmonella enterica strain PNUSAS388467 SAMN37663441-rid19586913.guided.19, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNICZ010000002.1	565953..566822	99.655	870	0						
GCA_032342955.1_PDT001912957.1_genomic.fna	Salmonella_enterica	0.5217	470.908 KB	3	aroC_13,dnaN_208,hemD_49,hisD_719,purE_33,sucA_16,thrA_4	2940	38:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_208	hemD	100	100	hemD_49	hisD	100	100	hisD_719	purE	100	100	purE_33	sucA	100	100	sucA_16	thrA	100	100	thrA_4	38	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Freetown		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNIEN010000001.1 Salmonella enterica strain PNUSAS388366 SAMN37664090-rid19587253.denovo.01, whole genome shotgun sequence	686036..686473	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNIEN010000033.1 Salmonella enterica strain PNUSAS388366 SAMN37664090-rid19587253.guided.20, whole genome shotgun sequence	5080..5517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIEN010000003.1	152797..153665	99.31	870	0						
GCA_032343195.1_PDT001830337.1_genomic.fna	Salmonella_enterica	0.5212	405.99 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIFC010000001.1 Salmonella enterica strain PNUSAS366974 SAMN36726062-rid18898743.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIFC010000032.1 Salmonella enterica strain PNUSAS366974 SAMN36726062-rid18898743.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIFC010000018.1 Salmonella enterica strain PNUSAS366974 SAMN36726062-rid18898743.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNIFC010000020.1 Salmonella enterica strain PNUSAS366974 SAMN36726062-rid18898743.denovo.23, whole genome shotgun sequence	3405..3666																																																avrA	ABNIFC010000002.1	553312..554181	99.54	870	0						
GCA_032343255.1_PDT001830333.1_genomic.fna	Salmonella_enterica	0.522	438.232 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNIFE010000001.1 Salmonella enterica strain PNUSAS366971 SAMN36726050-rid18896603.denovo.01, whole genome shotgun sequence	834416..834853	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNIFE010000024.1 Salmonella enterica strain PNUSAS366971 SAMN36726050-rid18896603.guided.17, whole genome shotgun sequence	24353..24790	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIFE010000002.1	564592..565461	99.77	870	0						
GCA_032343275.1_PDT001830332.1_genomic.fna	Salmonella_enterica	0.5205	393.66 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIFF010000010.1 Salmonella enterica strain PNUSAS366969 SAMN36726046-rid18898733.denovo.10, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIFF010000050.1 Salmonella enterica strain PNUSAS366969 SAMN36726046-rid18898733.guided.26, whole genome shotgun sequence	19437..19874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNIFF010000020.1 Salmonella enterica strain PNUSAS366969 SAMN36726046-rid18898733.denovo.20, whole genome shotgun sequence	55748..56281																																																						avrA	ABNIFF010000002.1	39344..40210	98.966	870	0						
GCA_032343295.1_PDT001830331.1_genomic.fna	Salmonella_enterica	0.5211	406.795 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIFG010000004.1 Salmonella enterica strain PNUSAS366973 SAMN36726051-rid18898723.denovo.04, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIFG010000027.1 Salmonella enterica strain PNUSAS366973 SAMN36726051-rid18898723.guided.15, whole genome shotgun sequence	2710..3147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIFG010000018.1 Salmonella enterica strain PNUSAS366973 SAMN36726051-rid18898723.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNIFG010000019.1 Salmonella enterica strain PNUSAS366973 SAMN36726051-rid18898723.denovo.22, whole genome shotgun sequence	3415..3676																																																avrA	ABNIFG010000001.1	585270..586139	99.54	870	0						
GCA_032343315.1_PDT001830330.1_genomic.fna	Salmonella_enterica	0.5211	532.149 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNIFH010000010.1 Salmonella enterica strain PNUSAS366968 SAMN36726048-rid18897263.denovo.10, whole genome shotgun sequence	70822..71259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNIFH010000028.1 Salmonella enterica strain PNUSAS366968 SAMN36726048-rid18897263.guided.14, whole genome shotgun sequence	16407..16844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIFH010000002.1	138363..139232	98.966	870	0						
GCA_032343335.1_PDT001830329.1_genomic.fna	Salmonella_enterica	0.5212	406.116 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIFI010000001.1 Salmonella enterica strain PNUSAS366970 SAMN36726047-rid18898713.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIFI010000029.1 Salmonella enterica strain PNUSAS366970 SAMN36726047-rid18898713.guided.20, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIFI010000019.1 Salmonella enterica strain PNUSAS366970 SAMN36726047-rid18898713.denovo.21, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNIFI010000021.1 Salmonella enterica strain PNUSAS366970 SAMN36726047-rid18898713.denovo.23, whole genome shotgun sequence	3382..3643																																																avrA	ABNIFI010000006.1	174754..175623	99.54	870	0						
GCA_032343355.1_PDT001830317.1_genomic.fna	Salmonella_enterica	0.5227	299.366 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIFJ010000001.1 Salmonella enterica strain PNUSAS366930 SAMN36721244-rid18899993.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIFJ010000031.1 Salmonella enterica strain PNUSAS366930 SAMN36721244-rid18899993.guided.25, whole genome shotgun sequence	12921..13358	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIFJ010000003.1	149923..150792	99.655	870	0						
GCA_032343375.1_PDT001830316.1_genomic.fna	Salmonella_enterica	0.5188	411.508 KB	5	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	3	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,sul1,sul1	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNIFK010000001.1 Salmonella enterica strain PNUSAS366939 SAMN36721239-rid18896563.denovo.01, whole genome shotgun sequence	150008..150445	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNIFK010000029.1 Salmonella enterica strain PNUSAS366939 SAMN36721239-rid18896563.denovo.34, whole genome shotgun sequence	261..1040	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	98.17	438/438	ABNIFK010000038.1 Salmonella enterica strain PNUSAS366939 SAMN36721239-rid18896563.guided.30, whole genome shotgun sequence	2408..2845	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNIFK010000041.1 Salmonella enterica strain PNUSAS366939 SAMN36721239-rid18896563.guided.33, whole genome shotgun sequence	996..1775	Spectinomycin, Streptomycin	D43625	sul1	100	840/840	ABNIFK010000022.1 Salmonella enterica strain PNUSAS366939 SAMN36721239-rid18896563.denovo.22, whole genome shotgun sequence	21315..22154	Sulfamethoxazole	X15024	sul1	100	840/840	ABNIFK010000039.1 Salmonella enterica strain PNUSAS366939 SAMN36721239-rid18896563.guided.31, whole genome shotgun sequence	292..1131	Sulfamethoxazole	X15024																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncHI2	100	327 / 327	ABNIFK010000025.1 Salmonella enterica strain PNUSAS366939 SAMN36721239-rid18896563.denovo.26, whole genome shotgun sequence	3134..3460	enterobacteriales	IncHI2A	100	630 / 630	ABNIFK010000023.1 Salmonella enterica strain PNUSAS366939 SAMN36721239-rid18896563.denovo.23, whole genome shotgun sequence	8856..9485																																																avrA	ABNIFK010000002.1	554441..555309	99.195	870	0						
GCA_032343395.1_PDT001830314.1_genomic.fna	Salmonella_enterica	0.521	465.913 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIFM010000001.1 Salmonella enterica strain PNUSAS366931 SAMN36721245-rid18898673.denovo.01, whole genome shotgun sequence	594123..594560	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIFM010000023.1 Salmonella enterica strain PNUSAS366931 SAMN36721245-rid18898673.guided.18, whole genome shotgun sequence	3350..3787	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIFM010000009.1	159686..160554	99.195	870	0						
GCA_032343415.1_PDT001830315.1_genomic.fna	Salmonella_enterica	0.5208	430.005 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIFL010000001.1 Salmonella enterica strain PNUSAS366935 SAMN36721248-rid18897213.denovo.01, whole genome shotgun sequence	562522..562959	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIFL010000028.1 Salmonella enterica strain PNUSAS366935 SAMN36721248-rid18897213.guided.14, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIFL010000010.1	140073..140941	99.195	870	0						
GCA_032343435.1_PDT001830313.1_genomic.fna	Salmonella_enterica	0.5232	294.482 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIFN010000001.1 Salmonella enterica strain PNUSAS366941 SAMN36721238-rid18897203.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIFN010000034.1 Salmonella enterica strain PNUSAS366941 SAMN36721238-rid18897203.guided.22, whole genome shotgun sequence	11323..11760	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032343455.1_PDT001830311.1_genomic.fna	Salmonella_enterica	0.5219	391.761 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIFP010000002.1 Salmonella enterica strain PNUSAS366936 SAMN36721249-rid18897193.denovo.02, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIFP010000025.1 Salmonella enterica strain PNUSAS366936 SAMN36721249-rid18897193.guided.20, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIFP010000003.1	256145..257014	99.31	870	0						
GCA_032343475.1_PDT001830312.1_genomic.fna	Salmonella_enterica	0.5195	258.68 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIFO010000001.1 Salmonella enterica strain PNUSAS366932 SAMN36721246-rid18898663.denovo.01, whole genome shotgun sequence	209000..209437	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIFO010000072.1 Salmonella enterica strain PNUSAS366932 SAMN36721246-rid18898663.guided.36, whole genome shotgun sequence	9655..10092	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNIFO010000017.1 Salmonella enterica strain PNUSAS366932 SAMN36721246-rid18898663.denovo.17, whole genome shotgun sequence	40588..41230	enterobacteriales	IncFII(S)	100	262 / 262	ABNIFO010000017.1 Salmonella enterica strain PNUSAS366932 SAMN36721246-rid18898663.denovo.17, whole genome shotgun sequence	56315..56576		enterobacteriales	IncFII(p96A)	99.06	534 / 534	ABNIFO010000026.1 Salmonella enterica strain PNUSAS366932 SAMN36721246-rid18898663.denovo.26, whole genome shotgun sequence	16931..17464																																									avrA	ABNIFO010000006.1	94133..95002	99.885	870	0						
GCA_032343495.1_PDT001830309.1_genomic.fna	Salmonella_enterica	0.5223	521.437 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNIFR010000001.1 Salmonella enterica strain PNUSAS366942 SAMN36721241-rid18898653.denovo.01, whole genome shotgun sequence	684162..684599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNIFR010000018.1 Salmonella enterica strain PNUSAS366942 SAMN36721241-rid18898653.guided.14, whole genome shotgun sequence	22353..22790	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIFR010000002.1	593643..594512	99.77	870	0						
GCA_032343515.1_PDT001830310.1_genomic.fna	Salmonella_enterica	0.5209	397.383 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	Col8282,IncI1-I(Alpha),IncX4,pSL483	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIFQ010000001.1 Salmonella enterica strain PNUSAS366938 SAMN36721240-rid18897183.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIFQ010000035.1 Salmonella enterica strain PNUSAS366938 SAMN36721240-rid18897183.guided.27, whole genome shotgun sequence	1671..2108	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col8282	90.59	202 / 207	ABNIFQ010000024.1 Salmonella enterica strain PNUSAS366938 SAMN36721240-rid18897183.denovo.26, whole genome shotgun sequence	3957..4158	enterobacteriales	IncI1-I(Alpha)	98.59	142 / 142	ABNIFQ010000014.1 Salmonella enterica strain PNUSAS366938 SAMN36721240-rid18897183.denovo.14, whole genome shotgun sequence	66622..66763		enterobacteriales	IncX4	99.73	374 / 374	ABNIFQ010000020.1 Salmonella enterica strain PNUSAS366938 SAMN36721240-rid18897183.denovo.20, whole genome shotgun sequence	13656..14029		enterobacteriales	pSL483	100	995 / 995	ABNIFQ010000018.1 Salmonella enterica strain PNUSAS366938 SAMN36721240-rid18897183.denovo.18, whole genome shotgun sequence	27844..28838																																		avrA	ABNIFQ010000002.1	149913..150782	99.655	870	0						
GCA_032343535.1_PDT001830308.1_genomic.fna	Salmonella_enterica	0.5214	655.977 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIFS010000001.1 Salmonella enterica strain PNUSAS366934 SAMN36721247-rid18896553.denovo.01, whole genome shotgun sequence	518034..518471	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIFS010000034.1 Salmonella enterica strain PNUSAS366934 SAMN36721247-rid18896553.guided.18, whole genome shotgun sequence	14687..15124	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIFS010000003.1	504316..505186	99.196	871	0						
GCA_032343555.1_PDT001830307.1_genomic.fna	Salmonella_enterica	0.5205	394.643 KB	5	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIFT010000002.1 Salmonella enterica strain PNUSAS366933 SAMN36721243-rid18899983.denovo.02, whole genome shotgun sequence	145326..145763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIFT010000022.1 Salmonella enterica strain PNUSAS366933 SAMN36721243-rid18899983.guided.19, whole genome shotgun sequence	18404..18841	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNIFT010000010.1	175196..176065	99.655	870	0						
GCA_032343575.1_PDT001830306.1_genomic.fna	Salmonella_enterica	0.5227	336.406 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIFU010000001.1 Salmonella enterica strain PNUSAS366940 SAMN36721237-rid18896543.denovo.01, whole genome shotgun sequence	663650..664087	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIFU010000036.1 Salmonella enterica strain PNUSAS366940 SAMN36721237-rid18896543.guided.27, whole genome shotgun sequence	1435..1872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIFU010000002.1	94085..94954	99.655	870	0						
GCA_032343635.1_PDT001830305.1_genomic.fna	Salmonella_enterica	0.5217	333.002 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIFV010000001.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNIFV010000025.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.denovo.25, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIFV010000025.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.denovo.25, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNIFV010000035.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.denovo.40, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNIFV010000035.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.denovo.40, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNIFV010000039.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.denovo.46, whole genome shotgun sequence	93..908	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	X62115	aadA1	99.75	792/792	ABNIFV010000044.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.guided.30, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIFV010000044.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.guided.30, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNIFV010000048.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.guided.39, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNIFV010000048.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.guided.39, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNIFV010000050.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.guided.45, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	X62115	aac(6')-Iaa	97.49	438/438	ABNIFV010000051.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.guided.47, whole genome shotgun sequence	232..669	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	ABNIFV010000032.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.denovo.34, whole genome shotgun sequence	3786..4999	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIFV010000047.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.guided.36, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNIFV010000025.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.denovo.25, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNIFV010000044.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.guided.30, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNIFV010000025.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.denovo.25, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNIFV010000046.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.guided.35, whole genome shotgun sequence	2847..4046	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNIFV010000031.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.denovo.33, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNIFV010000049.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.guided.43, whole genome shotgun sequence	1247..1720	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNIFV010000024.1 Salmonella enterica strain PNUSAS366943 SAMN36721242-rid18897173.denovo.24, whole genome shotgun sequence	23066..23625																																																						avrA	ABNIFV010000003.1	149828..150697	99.655	870	0						
GCA_032343755.1_PDT001830280.1_genomic.fna	Salmonella_enterica	0.5224	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIGE010000001.1 Salmonella enterica strain PNUSAS366927 SAMN36721225-rid18896503.denovo.01, whole genome shotgun sequence	790218..790655	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIGE010000028.1 Salmonella enterica strain PNUSAS366927 SAMN36721225-rid18896503.guided.23, whole genome shotgun sequence	518..955	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIGE010000002.1	95178..96047	98.966	870	0						
GCA_032343775.1_PDT001830281.1_genomic.fna	Salmonella_enterica	0.5213	430.099 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIGD010000001.1 Salmonella enterica strain PNUSAS366926 SAMN36721227-rid18896513.denovo.01, whole genome shotgun sequence	383043..383480	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIGD010000030.1 Salmonella enterica strain PNUSAS366926 SAMN36721227-rid18896513.guided.19, whole genome shotgun sequence	3055..3492	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIGD010000002.1	503598..504466	99.195	870	0						
GCA_032343815.1_PDT001830279.1_genomic.fna	Salmonella_enterica	0.5198	161.392 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNIGF010000010.1 Salmonella enterica strain PNUSAS366920 SAMN36721232-rid18896493.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNIGF010000056.1 Salmonella enterica strain PNUSAS366920 SAMN36721232-rid18896493.guided.34, whole genome shotgun sequence	7954..8388	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032343835.1_PDT001830278.1_genomic.fna	Salmonella_enterica	0.5227	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIGG010000001.1 Salmonella enterica strain PNUSAS366929 SAMN36721235-rid18896483.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIGG010000026.1 Salmonella enterica strain PNUSAS366929 SAMN36721235-rid18896483.guided.18, whole genome shotgun sequence	2590..3027	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIGG010000002.1	129887..130756	98.966	870	0						
GCA_032343855.1_PDT001830277.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIGH010000001.1 Salmonella enterica strain PNUSAS366928 SAMN36721226-rid18896473.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIGH010000023.1 Salmonella enterica strain PNUSAS366928 SAMN36721226-rid18896473.guided.18, whole genome shotgun sequence	2544..2981	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIGH010000013.1 Salmonella enterica strain PNUSAS366928 SAMN36721226-rid18896473.denovo.13, whole genome shotgun sequence	40544..41186	enterobacteriales	IncFII(S)	100	262 / 262	ABNIGH010000016.1 Salmonella enterica strain PNUSAS366928 SAMN36721226-rid18896473.denovo.17, whole genome shotgun sequence	3401..3662																																																avrA	ABNIGH010000002.1	552689..553558	99.54	870	0						
GCA_032343875.1_PDT001830276.1_genomic.fna	Salmonella_enterica	0.5212	478.79 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIGI010000002.1 Salmonella enterica strain PNUSAS366925 SAMN36721234-rid18896463.denovo.02, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIGI010000028.1 Salmonella enterica strain PNUSAS366925 SAMN36721234-rid18896463.guided.21, whole genome shotgun sequence	3188..3625	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIGI010000014.1 Salmonella enterica strain PNUSAS366925 SAMN36721234-rid18896463.denovo.14, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNIGI010000018.1 Salmonella enterica strain PNUSAS366925 SAMN36721234-rid18896463.denovo.20, whole genome shotgun sequence	3395..3656																																																avrA	ABNIGI010000001.1	585487..586356	99.54	870	0						
GCA_032343895.1_PDT001830275.1_genomic.fna	Salmonella_enterica	0.5212	673.261 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIGJ010000001.1 Salmonella enterica strain PNUSAS366919 SAMN36721233-rid18896453.denovo.01, whole genome shotgun sequence	642138..642575	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIGJ010000021.1 Salmonella enterica strain PNUSAS366919 SAMN36721233-rid18896453.guided.14, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032343915.1_PDT001912951.1_genomic.fna	Salmonella_enterica	0.5197	368.134 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIGM010000001.1 Salmonella enterica strain PNUSAS388372 SAMN37664096-rid19587193.denovo.01, whole genome shotgun sequence	486107..486544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIGM010000034.1 Salmonella enterica strain PNUSAS388372 SAMN37664096-rid19587193.guided.14, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNIGM010000005.1 Salmonella enterica strain PNUSAS388372 SAMN37664096-rid19587193.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNIGM010000037.1 Salmonella enterica strain PNUSAS388372 SAMN37664096-rid19587193.guided.28, whole genome shotgun sequence	6683..7105	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIGM010000007.1	169369..170238	99.195	870	0						
GCA_032343935.1_PDT001912953.1_genomic.fna	Salmonella_enterica	0.523	243.281 KB	5	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIGL010000001.1 Salmonella enterica strain PNUSAS388377 SAMN37664101-rid19587213.denovo.01, whole genome shotgun sequence	170009..170446	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIGL010000036.1 Salmonella enterica strain PNUSAS388377 SAMN37664101-rid19587213.guided.20, whole genome shotgun sequence	42396..42833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032343955.1_PDT001830274.1_genomic.fna	Salmonella_enterica	0.5206	375.53 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	5	Col8282,IncFII(pHN7A8),IncI1-I(Alpha),IncX4,pSL483	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIGK010000001.1 Salmonella enterica strain PNUSAS366923 SAMN36721229-rid18896443.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIGK010000037.1 Salmonella enterica strain PNUSAS366923 SAMN36721229-rid18896443.guided.24, whole genome shotgun sequence	1756..2193	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col8282	90.59	202 / 207	ABNIGK010000028.1 Salmonella enterica strain PNUSAS366923 SAMN36721229-rid18896443.denovo.31, whole genome shotgun sequence	3957..4158	enterobacteriales	IncFII(pHN7A8)	96.92	260 / 260	ABNIGK010000020.1 Salmonella enterica strain PNUSAS366923 SAMN36721229-rid18896443.denovo.20, whole genome shotgun sequence	10370..10629		enterobacteriales	IncI1-I(Alpha)	98.59	142 / 142	ABNIGK010000014.1 Salmonella enterica strain PNUSAS366923 SAMN36721229-rid18896443.denovo.14, whole genome shotgun sequence	67434..67575		enterobacteriales	IncX4	99.73	374 / 374	ABNIGK010000022.1 Salmonella enterica strain PNUSAS366923 SAMN36721229-rid18896443.denovo.22, whole genome shotgun sequence	13656..14029		enterobacteriales	pSL483	100	995 / 995	ABNIGK010000018.1 Salmonella enterica strain PNUSAS366923 SAMN36721229-rid18896443.denovo.18, whole genome shotgun sequence	27844..28838																											avrA	ABNIGK010000002.1	150337..151206	99.655	870	0						
GCA_032343975.1_PDT001912949.1_genomic.fna	Salmonella_enterica	0.5227	263.566 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIGN010000001.1 Salmonella enterica strain PNUSAS388382 SAMN37663897-rid19587173.denovo.01, whole genome shotgun sequence	512311..512748	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIGN010000043.1 Salmonella enterica strain PNUSAS388382 SAMN37663897-rid19587173.guided.25, whole genome shotgun sequence	40112..40549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIGN010000005.1	150017..150886	99.655	870	0						
GCA_032344015.1_PDT001912931.1_genomic.fna	Salmonella_enterica	0.522	466.418 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIGP010000001.1 Salmonella enterica strain PNUSAS388474 SAMN37663485-rid19586993.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIGP010000021.1 Salmonella enterica strain PNUSAS388474 SAMN37663485-rid19586993.guided.18, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIGP010000011.1	150695..151565	99.196	871	0						
GCA_032344035.1_PDT001912924.1_genomic.fna	Salmonella_enterica	0.5225	472.757 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIGQ010000001.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.denovo.01, whole genome shotgun sequence	172249..172686	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNIGQ010000022.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.denovo.29, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNIGQ010000030.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.guided.14, whole genome shotgun sequence	30280..30717	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNIGQ010000036.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.guided.28, whole genome shotgun sequence	2051..2830	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNIGQ010000022.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.denovo.29, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNIGQ010000036.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.guided.28, whole genome shotgun sequence	1055..1921	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNIGQ010000020.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.denovo.24, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNIGQ010000033.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.guided.23, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNIGQ010000019.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.denovo.22, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIGQ010000034.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.guided.26, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNIGQ010000022.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.denovo.29, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNIGQ010000036.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.guided.28, whole genome shotgun sequence	139..795	Ciprofloxacin	AY070235	sul1	100	840/840	ABNIGQ010000025.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.denovo.33, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNIGQ010000037.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.guided.32, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNIGQ010000019.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.denovo.22, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNIGQ010000035.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.guided.27, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNIGQ010000019.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.denovo.22, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNIGQ010000035.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.guided.27, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNIGQ010000017.1 Salmonella enterica strain PNUSAS388466 SAMN37663440-rid19586923.denovo.18, whole genome shotgun sequence	4434..4684																																																						avrA	ABNIGQ010000002.1	583640..584509	99.77	870	0						
GCA_032344055.1_PDT001830273.1_genomic.fna	Salmonella_enterica	0.5215	395.208 KB	4	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIGR010000001.1 Salmonella enterica strain PNUSAS366918 SAMN36721231-rid18896433.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIGR010000025.1 Salmonella enterica strain PNUSAS366918 SAMN36721231-rid18896433.guided.18, whole genome shotgun sequence	201..638	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIGR010000003.1	371909..372778	99.31	870	0						
GCA_032344075.1_PDT001830272.1_genomic.fna	Salmonella_enterica	0.5225	762.445 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIGS010000001.1 Salmonella enterica strain PNUSAS366921 SAMN36721230-rid18896423.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIGS010000020.1 Salmonella enterica strain PNUSAS366921 SAMN36721230-rid18896423.guided.14, whole genome shotgun sequence	3090..3527	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNIGS010000004.1	553566..554435	99.655	870	0						
GCA_032344095.1_PDT001830270.1_genomic.fna	Salmonella_enterica	0.5234	397.893 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIGU010000001.1 Salmonella enterica strain PNUSAS366924 SAMN36721224-rid18896403.denovo.01, whole genome shotgun sequence	622355..622792	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIGU010000029.1 Salmonella enterica strain PNUSAS366924 SAMN36721224-rid18896403.guided.21, whole genome shotgun sequence	21237..21674	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	ABNIGU010000013.1 Salmonella enterica strain PNUSAS366924 SAMN36721224-rid18896403.denovo.13, whole genome shotgun sequence	18838..18977																																																						avrA	ABNIGU010000002.1	95066..95935	99.655	870	0						
GCA_032344115.1_PDT001830271.1_genomic.fna	Salmonella_enterica	0.5212	401.713 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIGT010000001.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.denovo.01, whole genome shotgun sequence	537510..537947	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIGT010000019.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.denovo.19, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNIGT010000019.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.denovo.19, whole genome shotgun sequence	30930..31732	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNIGT010000029.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.guided.20, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNIGT010000029.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.guided.20, whole genome shotgun sequence	3378..4180	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNIGT010000032.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.guided.25, whole genome shotgun sequence	2816..3253	Amikacin, Tobramycin	NC_003197	blaTEM-214	100	824/861	ABNIGT010000016.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.denovo.16, whole genome shotgun sequence	53503..54326	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNIGT010000016.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.denovo.16, whole genome shotgun sequence	53503..54326	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNIGT010000016.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.denovo.16, whole genome shotgun sequence	53503..54326	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNIGT010000019.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.denovo.19, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNIGT010000029.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.guided.20, whole genome shotgun sequence	33397..34542	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNIGT010000034.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.guided.29, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNIGT010000034.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.guided.29, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNIGT010000034.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.guided.29, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNIGT010000019.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.denovo.19, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIGT010000033.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNIGT010000019.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.denovo.19, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIGT010000029.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.guided.20, whole genome shotgun sequence	4241..5056	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNIGT010000019.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.denovo.19, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNIGT010000029.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.guided.20, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncC	100	417 / 417	ABNIGT010000016.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.denovo.16, whole genome shotgun sequence	17490..17906	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNIGT010000015.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.denovo.15, whole genome shotgun sequence	29705..29964		enterobacteriales	IncX1	98.66	374 / 374	ABNIGT010000015.1 Salmonella enterica strain PNUSAS366917 SAMN36721228-rid18896413.denovo.15, whole genome shotgun sequence	65559..65932																																									avrA	ABNIGT010000002.1	504348..505216	99.54	870	0						
GCA_032344215.1_PDT001830266.1_genomic.fna	Salmonella_enterica	0.5205	657.676 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(p14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNIGY010000001.1 Salmonella enterica strain PNUSAS366922 SAMN36721223-rid18896363.denovo.01, whole genome shotgun sequence	498159..498596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNIGY010000022.1 Salmonella enterica strain PNUSAS366922 SAMN36721223-rid18896363.guided.17, whole genome shotgun sequence	4258..4695	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNIGY010000010.1 Salmonella enterica strain PNUSAS366922 SAMN36721223-rid18896363.denovo.10, whole genome shotgun sequence	17040..17682	enterobacteriales	IncFII(p14)	92.02	263 / 262	ABNIGY010000010.1 Salmonella enterica strain PNUSAS366922 SAMN36721223-rid18896363.denovo.10, whole genome shotgun sequence	33612..33870																																																avrA	ABNIGY010000003.1	498418..498979	99.645	563	0	avrA	ABNIGY010000003.1	498979..499237	98.842	259	9.8e-131
GCA_032344255.1_PDT001830262.1_genomic.fna	Salmonella_enterica	0.5221	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIHC010000001.1 Salmonella enterica strain PNUSAS366880 SAMN36720863-rid18896323.denovo.01, whole genome shotgun sequence	833828..834265	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIHC010000028.1 Salmonella enterica strain PNUSAS366880 SAMN36720863-rid18896323.guided.20, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIHC010000002.1	129887..130756	98.966	870	0						
GCA_032344275.1_PDT001830263.1_genomic.fna	Salmonella_enterica	0.5213	152.952 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIHB010000002.1 Salmonella enterica strain PNUSAS366897 SAMN36720867-rid18896333.denovo.02, whole genome shotgun sequence	53510..53947	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIHB010000057.1 Salmonella enterica strain PNUSAS366897 SAMN36720867-rid18896333.guided.42, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNIHB010000050.1 Salmonella enterica strain PNUSAS366897 SAMN36720867-rid18896333.denovo.53, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIHB010000042.1 Salmonella enterica strain PNUSAS366897 SAMN36720867-rid18896333.denovo.43, whole genome shotgun sequence	6818..7460		enterobacteriales	IncFII(S)	100	262 / 262	ABNIHB010000045.1 Salmonella enterica strain PNUSAS366897 SAMN36720867-rid18896333.denovo.48, whole genome shotgun sequence	3395..3656																																									avrA	ABNIHB010000001.1	505326..506195	99.54	870	0						
GCA_032344295.1_PDT001830261.1_genomic.fna	Salmonella_enterica	0.5209	102.154 KB	17	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIHD010000032.1 Salmonella enterica strain PNUSAS366784 SAMN36720859-rid18896313.denovo.32, whole genome shotgun sequence	24919..25356	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNIHD010000074.1 Salmonella enterica strain PNUSAS366784 SAMN36720859-rid18896313.guided.53, whole genome shotgun sequence	10458..10895	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIHD010000075.1 Salmonella enterica strain PNUSAS366784 SAMN36720859-rid18896313.guided.54, whole genome shotgun sequence	10458..10895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNIHD010000030.1 Salmonella enterica strain PNUSAS366784 SAMN36720859-rid18896313.denovo.30, whole genome shotgun sequence	34958..35491																																																						avrA	ABNIHD010000027.1	39428..40297	99.425	870	0						
GCA_032344315.1_PDT001830260.1_genomic.fna	Salmonella_enterica	0.5212	323.942 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIHE010000001.1 Salmonella enterica strain PNUSAS366887 SAMN36720861-rid18896303.denovo.01, whole genome shotgun sequence	458961..459398	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIHE010000040.1 Salmonella enterica strain PNUSAS366887 SAMN36720861-rid18896303.guided.32, whole genome shotgun sequence	979..1416	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNIHE010000020.1 Salmonella enterica strain PNUSAS366887 SAMN36720861-rid18896303.denovo.20, whole genome shotgun sequence	59120..59762	enterobacteriales	IncFII(S)	100	262 / 262	ABNIHE010000020.1 Salmonella enterica strain PNUSAS366887 SAMN36720861-rid18896303.denovo.20, whole genome shotgun sequence	43774..44035																																																avrA	ABNIHE010000002.1	209723..210592	99.885	870	0						
GCA_032344355.1_PDT001830257.1_genomic.fna	Salmonella_enterica	0.5212	478.724 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIHH010000001.1 Salmonella enterica strain PNUSAS366879 SAMN36720860-rid18896273.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIHH010000024.1 Salmonella enterica strain PNUSAS366879 SAMN36720860-rid18896273.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIHH010000016.1 Salmonella enterica strain PNUSAS366879 SAMN36720860-rid18896273.denovo.18, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNIHH010000013.1 Salmonella enterica strain PNUSAS366879 SAMN36720860-rid18896273.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNIHH010000002.1	553553..554422	99.54	870	0						
GCA_032344395.1_PDT001830256.1_genomic.fna	Salmonella_enterica	0.5207	288.46 KB	7	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIHJ010000012.1 Salmonella enterica strain PNUSAS366882 SAMN36720862-rid18896263.denovo.12, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIHJ010000046.1 Salmonella enterica strain PNUSAS366882 SAMN36720862-rid18896263.guided.24, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNIHJ010000020.1 Salmonella enterica strain PNUSAS366882 SAMN36720862-rid18896263.denovo.20, whole genome shotgun sequence	34958..35491																																																						avrA	ABNIHJ010000002.1	39478..40344	98.966	870	0						
GCA_032344455.1_PDT001830250.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIHO010000001.1 Salmonella enterica strain PNUSAS366888 SAMN36720783-rid18896203.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIHO010000023.1 Salmonella enterica strain PNUSAS366888 SAMN36720783-rid18896203.guided.17, whole genome shotgun sequence	20612..21049	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIHO010000015.1 Salmonella enterica strain PNUSAS366888 SAMN36720783-rid18896203.denovo.16, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABNIHO010000018.1 Salmonella enterica strain PNUSAS366888 SAMN36720783-rid18896203.denovo.21, whole genome shotgun sequence	3397..3658																																																avrA	ABNIHO010000002.1	553636..554505	99.54	870	0						
GCA_032344465.1_PDT001830254.1_genomic.fna	Salmonella_enterica	0.5216	277.732 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIHL010000001.1 Salmonella enterica strain PNUSAS366886 SAMN36720779-rid18896243.denovo.01, whole genome shotgun sequence	413095..413532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIHL010000047.1 Salmonella enterica strain PNUSAS366886 SAMN36720779-rid18896243.guided.31, whole genome shotgun sequence	12427..12864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNIHL010000017.1 Salmonella enterica strain PNUSAS366886 SAMN36720779-rid18896243.denovo.17, whole genome shotgun sequence	48390..49032	enterobacteriales	IncFII(S)	100	262 / 262	ABNIHL010000017.1 Salmonella enterica strain PNUSAS366886 SAMN36720779-rid18896243.denovo.17, whole genome shotgun sequence	64117..64378																																																avrA	ABNIHL010000004.1	145796..146665	99.885	870	0						
GCA_032344495.1_PDT001830253.1_genomic.fna	Salmonella_enterica	0.5192	378.455 KB	6	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIHK010000002.1 Salmonella enterica strain PNUSAS366877 SAMN36720777-rid18896233.denovo.02, whole genome shotgun sequence	386386..386823	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIHK010000035.1 Salmonella enterica strain PNUSAS366877 SAMN36720777-rid18896233.guided.20, whole genome shotgun sequence	20589..21026	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032344515.1_PDT001830252.1_genomic.fna	Salmonella_enterica	0.521	443.139 KB	4	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIHM010000001.1 Salmonella enterica strain PNUSAS366878 SAMN36720784-rid18896223.denovo.01, whole genome shotgun sequence	780059..780496	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIHM010000029.1 Salmonella enterica strain PNUSAS366878 SAMN36720784-rid18896223.guided.15, whole genome shotgun sequence	26396..26833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIHM010000020.1 Salmonella enterica strain PNUSAS366878 SAMN36720784-rid18896223.denovo.21, whole genome shotgun sequence	18129..18771	enterobacteriales	IncFII(S)	100	262 / 262	ABNIHM010000020.1 Salmonella enterica strain PNUSAS366878 SAMN36720784-rid18896223.denovo.21, whole genome shotgun sequence	3429..3690																																																avrA	ABNIHM010000002.1	506077..506946	99.54	870	0						
GCA_032344535.1_PDT001830251.1_genomic.fna	Salmonella_enterica	0.5209	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIHN010000001.1 Salmonella enterica strain PNUSAS366884 SAMN36720781-rid18896213.denovo.01, whole genome shotgun sequence	815078..815515	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIHN010000032.1 Salmonella enterica strain PNUSAS366884 SAMN36720781-rid18896213.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNIHN010000018.1 Salmonella enterica strain PNUSAS366884 SAMN36720781-rid18896213.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNIHN010000019.1 Salmonella enterica strain PNUSAS366884 SAMN36720781-rid18896213.denovo.22, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.66	374 / 374	ABNIHN010000020.1 Salmonella enterica strain PNUSAS366884 SAMN36720781-rid18896213.denovo.23, whole genome shotgun sequence	4078..4451																																									avrA	ABNIHN010000002.1	553181..554050	99.54	870	0						
GCA_032344555.1_PDT001830248.1_genomic.fna	Salmonella_enterica	0.5221	250.907 KB	7	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNIHQ010000002.1 Salmonella enterica strain PNUSAS366881 SAMN36720782-rid18896183.denovo.02, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNIHQ010000046.1 Salmonella enterica strain PNUSAS366881 SAMN36720782-rid18896183.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNIHQ010000006.1	43271..44140	99.77	870	0						
GCA_032344575.1_PDT001830249.1_genomic.fna	Salmonella_enterica	0.5212	273.328 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNIHP010000002.1 Salmonella enterica strain PNUSAS366883 SAMN36720778-rid18896193.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNIHP010000042.1 Salmonella enterica strain PNUSAS366883 SAMN36720778-rid18896193.guided.31, whole genome shotgun sequence	33194..33631	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNIHP010000023.1 Salmonella enterica strain PNUSAS366883 SAMN36720778-rid18896193.denovo.23, whole genome shotgun sequence	44728..45370	enterobacteriales	IncFII(S)	100	262 / 262	ABNIHP010000023.1 Salmonella enterica strain PNUSAS366883 SAMN36720778-rid18896193.denovo.23, whole genome shotgun sequence	29382..29643		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNIHP010000019.1 Salmonella enterica strain PNUSAS366883 SAMN36720778-rid18896193.denovo.19, whole genome shotgun sequence	70092..70233																																									avrA	ABNIHP010000005.1	174759..175627	100	869	0						
GCA_032344595.1_PDT001830247.1_genomic.fna	Salmonella_enterica	0.5207	489.494 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIHR010000001.1 Salmonella enterica strain PNUSAS366885 SAMN36720780-rid18896173.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIHR010000028.1 Salmonella enterica strain PNUSAS366885 SAMN36720780-rid18896173.guided.21, whole genome shotgun sequence	3634..4071	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIHR010000019.1 Salmonella enterica strain PNUSAS366885 SAMN36720780-rid18896173.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNIHR010000020.1 Salmonella enterica strain PNUSAS366885 SAMN36720780-rid18896173.denovo.23, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.93	374 / 374	ABNIHR010000015.1 Salmonella enterica strain PNUSAS366885 SAMN36720780-rid18896173.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNIHR010000002.1	553684..554553	99.54	870	0						
GCA_032344955.1_PDT001912956.1_genomic.fna	Salmonella_enterica	0.5218	417.161 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIII010000001.1 Salmonella enterica strain PNUSAS388379 SAMN37664103-rid19587243.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIII010000033.1 Salmonella enterica strain PNUSAS388379 SAMN37664103-rid19587243.guided.18, whole genome shotgun sequence	42746..43183	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIII010000006.1	202681..203550	98.966	870	0						
GCA_032345115.1_PDT001830080.1_genomic.fna	Salmonella_enterica	0.5206	363.123 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZPO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465102-rid18894503.denovo.01, whole genome shotgun sequence	756467..756904	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZPO010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465102-rid18894503.guided.20, whole genome shotgun sequence	15933..16370	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZPO010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465102-rid18894503.denovo.16, whole genome shotgun sequence	63370..63629	enterobacteriales	IncX1	98.66	374 / 374	DAPZPO010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465102-rid18894503.denovo.16, whole genome shotgun sequence	24675..25048																																																avrA	DAPZPO010000002.1	173552..174420	99.655	870	0						
GCA_032345135.1_PDT001830078.1_genomic.fna	Salmonella_enterica	0.5204	400.162 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZPQ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465095-rid18894483.denovo.06, whole genome shotgun sequence	138621..139058	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZPQ010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465095-rid18894483.guided.13, whole genome shotgun sequence	12218..12655	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZPQ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465095-rid18894483.denovo.18, whole genome shotgun sequence	63391..63650	enterobacteriales	IncX1	98.66	374 / 374	DAPZPQ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465095-rid18894483.denovo.18, whole genome shotgun sequence	24683..25056																																																avrA	DAPZPQ010000001.1	504464..505332	99.655	870	0						
GCA_032345155.1_PDT001830079.1_genomic.fna	Salmonella_enterica	0.521	377.991 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZPP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465100-rid18894493.denovo.01, whole genome shotgun sequence	793749..794186	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZPP010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465100-rid18894493.guided.24, whole genome shotgun sequence	10837..11274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZPP010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465100-rid18894493.denovo.16, whole genome shotgun sequence	63409..63668	enterobacteriales	IncX1	98.66	374 / 374	DAPZPP010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465100-rid18894493.denovo.16, whole genome shotgun sequence	24683..25056																																																avrA	DAPZPP010000005.1	173569..174437	99.655	870	0						
GCA_032345175.1_PDT001830076.1_genomic.fna	Salmonella_enterica	0.5213	236.077 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNIIP010000002.1 Salmonella enterica strain PNUSAS366814 SAMN36718571-rid18894473.denovo.02, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNIIP010000042.1 Salmonella enterica strain PNUSAS366814 SAMN36718571-rid18894473.guided.36, whole genome shotgun sequence	2896..3333	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNIIP010000001.1	452559..453427	100	869	0						
GCA_032345215.1_PDT001830069.1_genomic.fna	Salmonella_enterica	0.5209	403.015 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZPU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465099-rid18894433.denovo.01, whole genome shotgun sequence	476341..476778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZPU010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465099-rid18894433.guided.23, whole genome shotgun sequence	13162..13599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZPU010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465099-rid18894433.denovo.15, whole genome shotgun sequence	63400..63659	enterobacteriales	IncX1	98.66	374 / 374	DAPZPU010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465099-rid18894433.denovo.15, whole genome shotgun sequence	24683..25056																																																avrA	DAPZPU010000002.1	496418..497286	99.655	870	0						
GCA_032345235.1_PDT001830075.1_genomic.fna	Salmonella_enterica	0.5217	545.718 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNIIQ010000001.1 Salmonella enterica strain PNUSAS366815 SAMN36718406-rid18894083.denovo.01, whole genome shotgun sequence	397862..398299	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNIIQ010000029.1 Salmonella enterica strain PNUSAS366815 SAMN36718406-rid18894083.guided.18, whole genome shotgun sequence	2543..2980	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIIQ010000002.1	544607..545475	99.425	870	0						
GCA_032345255.1_PDT001830071.1_genomic.fna	Salmonella_enterica	0.5209	405.771 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZPS010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465103-rid18894443.denovo.04, whole genome shotgun sequence	156131..156568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZPS010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465103-rid18894443.guided.22, whole genome shotgun sequence	13162..13599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZPS010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465103-rid18894443.denovo.15, whole genome shotgun sequence	63390..63649	enterobacteriales	IncX1	98.66	374 / 374	DAPZPS010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465103-rid18894443.denovo.15, whole genome shotgun sequence	24675..25048																																																avrA	DAPZPS010000001.1	504475..505343	99.655	870	0						
GCA_032345265.1_PDT001830070.1_genomic.fna	Salmonella_enterica	0.5209	275.525 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZPT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465101-rid18894063.denovo.01, whole genome shotgun sequence	476341..476778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZPT010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465101-rid18894063.guided.29, whole genome shotgun sequence	13162..13599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZPT010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465101-rid18894063.denovo.19, whole genome shotgun sequence	63399..63658	enterobacteriales	IncX1	98.66	374 / 374	DAPZPT010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465101-rid18894063.denovo.19, whole genome shotgun sequence	24683..25056																																																avrA	DAPZPT010000002.1	173410..174278	99.655	870	0						
GCA_032345295.1_PDT001830072.1_genomic.fna	Salmonella_enterica	0.5203	403.046 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZPR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465104-rid18894073.denovo.01, whole genome shotgun sequence	802296..802733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZPR010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465104-rid18894073.guided.12, whole genome shotgun sequence	5703..6140	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZPR010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465104-rid18894073.denovo.16, whole genome shotgun sequence	63401..63660	enterobacteriales	IncX1	98.66	374 / 374	DAPZPR010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465104-rid18894073.denovo.16, whole genome shotgun sequence	24675..25048																																																avrA	DAPZPR010000002.1	504469..505337	99.655	870	0						
GCA_032345315.1_PDT001830068.1_genomic.fna	Salmonella_enterica	0.5209	310.267 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZPV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465098-rid18894053.denovo.01, whole genome shotgun sequence	156126..156563	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZPV010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465098-rid18894053.guided.27, whole genome shotgun sequence	13162..13599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZPV010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465098-rid18894053.denovo.19, whole genome shotgun sequence	63400..63659	enterobacteriales	IncX1	98.66	374 / 374	DAPZPV010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465098-rid18894053.denovo.19, whole genome shotgun sequence	24683..25056																																																avrA	DAPZPV010000005.1	148172..149040	99.655	870	0						
GCA_032345335.1_PDT001830066.1_genomic.fna	Salmonella_enterica	0.5205	239.91 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZPX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465096-rid18894423.denovo.01, whole genome shotgun sequence	39279..39716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZPX010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465096-rid18894423.guided.23, whole genome shotgun sequence	13162..13599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZPX010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465096-rid18894423.denovo.19, whole genome shotgun sequence	63400..63659	enterobacteriales	IncX1	98.66	374 / 374	DAPZPX010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465096-rid18894423.denovo.19, whole genome shotgun sequence	24683..25056																																																avrA	DAPZPX010000002.1	173549..174417	99.655	870	0						
GCA_032345355.1_PDT001830067.1_genomic.fna	Salmonella_enterica	0.5209	362.95 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZPW010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465097-rid18894043.denovo.03, whole genome shotgun sequence	156124..156561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZPW010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465097-rid18894043.guided.25, whole genome shotgun sequence	10544..10981	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZPW010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465097-rid18894043.denovo.16, whole genome shotgun sequence	63392..63651	enterobacteriales	IncX1	98.66	374 / 374	DAPZPW010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465097-rid18894043.denovo.16, whole genome shotgun sequence	24675..25048																																																avrA	DAPZPW010000001.1	504507..505375	99.655	870	0						
GCA_032345375.1_PDT001830065.1_genomic.fna	Salmonella_enterica	0.5207	362.796 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZPY010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465094-rid18894033.denovo.03, whole genome shotgun sequence	156096..156533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZPY010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465094-rid18894033.guided.28, whole genome shotgun sequence	13162..13599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZPY010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465094-rid18894033.denovo.17, whole genome shotgun sequence	63409..63668	enterobacteriales	IncX1	98.66	374 / 374	DAPZPY010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465094-rid18894033.denovo.17, whole genome shotgun sequence	24683..25056																																																avrA	DAPZPY010000002.1	148176..149044	99.655	870	0						
GCA_032345395.1_PDT001830064.1_genomic.fna	Salmonella_enterica	0.5208	362.82 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZPZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465093-rid18894413.denovo.01, whole genome shotgun sequence	476573..477010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZPZ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465093-rid18894413.guided.26, whole genome shotgun sequence	13162..13599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZPZ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465093-rid18894413.denovo.16, whole genome shotgun sequence	5707..5966	enterobacteriales	IncX1	98.66	374 / 374	DAPZPZ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465093-rid18894413.denovo.16, whole genome shotgun sequence	41561..41934																																																avrA	DAPZPZ010000002.1	173549..174417	99.655	870	0						
GCA_032345415.1_PDT001830063.1_genomic.fna	Salmonella_enterica	0.5208	402.997 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQB010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465092-rid18894403.denovo.03, whole genome shotgun sequence	156094..156531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQB010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465092-rid18894403.guided.25, whole genome shotgun sequence	13162..13599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQB010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465092-rid18894403.denovo.16, whole genome shotgun sequence	63409..63668	enterobacteriales	IncX1	98.66	374 / 374	DAPZQB010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465092-rid18894403.denovo.16, whole genome shotgun sequence	24683..25056																																																avrA	DAPZQB010000009.1	173563..174431	99.655	870	0						
GCA_032345435.1_PDT001830061.1_genomic.fna	Salmonella_enterica	0.5212	215.631 KB	8	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQC010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465090-rid18894393.denovo.03, whole genome shotgun sequence	224836..225273	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQC010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465090-rid18894393.guided.48, whole genome shotgun sequence	1451..1888	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQC010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465090-rid18894393.denovo.19, whole genome shotgun sequence	63391..63650	enterobacteriales	IncX1	98.66	374 / 374	DAPZQC010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465090-rid18894393.denovo.19, whole genome shotgun sequence	24683..25056																																																avrA	DAPZQC010000004.1	148160..149028	99.655	870	0						
GCA_032345455.1_PDT001830062.1_genomic.fna	Salmonella_enterica	0.5211	310.278 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465091-rid18894023.denovo.01, whole genome shotgun sequence	615076..615513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQA010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465091-rid18894023.guided.29, whole genome shotgun sequence	10760..11197	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQA010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465091-rid18894023.denovo.18, whole genome shotgun sequence	63400..63659	enterobacteriales	IncX1	98.66	374 / 374	DAPZQA010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465091-rid18894023.denovo.18, whole genome shotgun sequence	24683..25056																																																avrA	DAPZQA010000008.1	173563..174431	99.655	870	0						
GCA_032345475.1_PDT001830060.1_genomic.fna	Salmonella_enterica	0.5211	310.745 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465089-rid18894013.denovo.01, whole genome shotgun sequence	557341..557778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQD010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465089-rid18894013.guided.32, whole genome shotgun sequence	7354..7791	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQD010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465089-rid18894013.denovo.17, whole genome shotgun sequence	63391..63650	enterobacteriales	IncX1	98.66	374 / 374	DAPZQD010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465089-rid18894013.denovo.17, whole genome shotgun sequence	24683..25056																																																avrA	DAPZQD010000003.1	173550..174418	99.655	870	0						
GCA_032345495.1_PDT001830058.1_genomic.fna	Salmonella_enterica	0.5207	233.36 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQF010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465087-rid18894003.denovo.02, whole genome shotgun sequence	147554..147991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQF010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465087-rid18894003.guided.34, whole genome shotgun sequence	12155..12592	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQF010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465087-rid18894003.denovo.19, whole genome shotgun sequence	63410..63669	enterobacteriales	IncX1	98.66	374 / 374	DAPZQF010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465087-rid18894003.denovo.19, whole genome shotgun sequence	24675..25048																																																avrA	DAPZQF010000001.1	173558..174426	99.655	870	0						
GCA_032345515.1_PDT001830059.1_genomic.fna	Salmonella_enterica	0.521	297.405 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465088-rid18894383.denovo.01, whole genome shotgun sequence	251390..251827	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQE010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465088-rid18894383.guided.33, whole genome shotgun sequence	4216..4653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQE010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465088-rid18894383.denovo.16, whole genome shotgun sequence	63297..63556	enterobacteriales	IncX1	98.66	374 / 374	DAPZQE010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465088-rid18894383.denovo.16, whole genome shotgun sequence	24683..25056																																																avrA	DAPZQE010000002.1	173282..174150	99.655	870	0						
GCA_032345535.1_PDT001830057.1_genomic.fna	Salmonella_enterica	0.5209	239.911 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQH010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465086-rid18893993.denovo.04, whole genome shotgun sequence	106610..107047	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQH010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465086-rid18893993.guided.29, whole genome shotgun sequence	13162..13599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQH010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465086-rid18893993.denovo.19, whole genome shotgun sequence	63400..63659	enterobacteriales	IncX1	98.66	374 / 374	DAPZQH010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465086-rid18893993.denovo.19, whole genome shotgun sequence	24683..25056																																																avrA	DAPZQH010000001.1	173549..174417	99.655	870	0						
GCA_032345555.1_PDT001830056.1_genomic.fna	Salmonella_enterica	0.5208	262.189 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465085-rid18893983.denovo.01, whole genome shotgun sequence	147556..147993	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQG010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465085-rid18893983.guided.33, whole genome shotgun sequence	13162..13599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQG010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465085-rid18893983.denovo.19, whole genome shotgun sequence	63428..63687	enterobacteriales	IncX1	98.66	374 / 374	DAPZQG010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465085-rid18893983.denovo.19, whole genome shotgun sequence	24675..25048																																																avrA	DAPZQG010000007.1	173563..174431	99.655	870	0						
GCA_032345575.1_PDT001830053.1_genomic.fna	Salmonella_enterica	0.5209	320.186 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQK010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465082-rid18894363.denovo.02, whole genome shotgun sequence	154196..154633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAPZQK010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465082-rid18894363.guided.30, whole genome shotgun sequence	13162..13599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQK010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465082-rid18894363.guided.31, whole genome shotgun sequence	13162..13599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																							enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQK010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465082-rid18894363.denovo.18, whole genome shotgun sequence	63392..63651	enterobacteriales	IncX1	98.66	374 / 374	DAPZQK010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465082-rid18894363.denovo.18, whole genome shotgun sequence	24675..25048																																																avrA	DAPZQK010000008.1	173563..174431	99.655	870	0						
GCA_032345595.1_PDT001830055.1_genomic.fna	Salmonella_enterica	0.5208	362.593 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465084-rid18893973.denovo.01, whole genome shotgun sequence	373311..373748	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQJ010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465084-rid18893973.guided.23, whole genome shotgun sequence	13162..13599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQJ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465084-rid18893973.denovo.16, whole genome shotgun sequence	63400..63659	enterobacteriales	IncX1	98.66	374 / 374	DAPZQJ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465084-rid18893973.denovo.16, whole genome shotgun sequence	24683..25056																																																avrA	DAPZQJ010000007.1	173549..174417	99.655	870	0						
GCA_032345615.1_PDT001830054.1_genomic.fna	Salmonella_enterica	0.521	231.734 KB	8	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQI010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465083-rid18894373.denovo.05, whole genome shotgun sequence	224767..225204	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQI010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465083-rid18894373.guided.41, whole genome shotgun sequence	2922..3359	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQI010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465083-rid18894373.denovo.19, whole genome shotgun sequence	63400..63659	enterobacteriales	IncX1	98.66	374 / 374	DAPZQI010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465083-rid18894373.denovo.19, whole genome shotgun sequence	24683..25056																																																avrA	DAPZQI010000006.1	148147..149015	99.655	870	0						
GCA_032345635.1_PDT001830051.1_genomic.fna	Salmonella_enterica	0.5216	171.015 KB	8	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQM010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465080-rid18894353.denovo.23, whole genome shotgun sequence	12449..12886	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQM010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465080-rid18894353.guided.36, whole genome shotgun sequence	12122..12559	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAPZQM010000002.1	173426..174294	99.655	870	0						
GCA_032345655.1_PDT001830052.1_genomic.fna	Salmonella_enterica	0.5209	320.348 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQL010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465081-rid18893963.denovo.02, whole genome shotgun sequence	156114..156551	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQL010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465081-rid18893963.guided.28, whole genome shotgun sequence	10801..11238	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQL010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465081-rid18893963.denovo.17, whole genome shotgun sequence	63392..63651	enterobacteriales	IncX1	98.66	374 / 374	DAPZQL010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465081-rid18893963.denovo.17, whole genome shotgun sequence	24675..25048																																																avrA	DAPZQL010000001.1	504445..505313	99.655	870	0						
GCA_032345675.1_PDT001830049.1_genomic.fna	Salmonella_enterica	0.5209	403.026 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQO010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465078-rid18894343.denovo.04, whole genome shotgun sequence	156113..156550	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQO010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465078-rid18894343.guided.25, whole genome shotgun sequence	13162..13599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQO010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465078-rid18894343.denovo.16, whole genome shotgun sequence	63392..63651	enterobacteriales	IncX1	98.66	374 / 374	DAPZQO010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465078-rid18894343.denovo.16, whole genome shotgun sequence	24675..25048																																																avrA	DAPZQO010000001.1	504446..505314	99.655	870	0						
GCA_032345695.1_PDT001830050.1_genomic.fna	Salmonella_enterica	0.5203	142.903 KB	11	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(AP001918),IncFIC(FII),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQN010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465079-rid18893953.denovo.08, whole genome shotgun sequence	12412..12849	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQN010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465079-rid18893953.guided.58, whole genome shotgun sequence	618..1055	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(AP001918)	98.53	682 / 682	DAPZQN010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465079-rid18893953.denovo.44, whole genome shotgun sequence	8590..9271	enterobacteriales	IncFIC(FII)	100	499 / 499	DAPZQN010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465079-rid18893953.denovo.25, whole genome shotgun sequence	17276..17774		enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQN010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465079-rid18893953.denovo.26, whole genome shotgun sequence	63400..63659		enterobacteriales	IncX1	98.66	374 / 374	DAPZQN010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465079-rid18893953.denovo.26, whole genome shotgun sequence	24683..25056																																		avrA	DAPZQN010000001.1	173563..174431	99.655	870	0						
GCA_032345715.1_PDT001830048.1_genomic.fna	Salmonella_enterica	0.521	187.106 KB	8	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQP010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465077-rid18893943.denovo.02, whole genome shotgun sequence	156124..156561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQP010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465077-rid18893943.guided.35, whole genome shotgun sequence	6223..6660	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQP010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465077-rid18893943.denovo.21, whole genome shotgun sequence	63400..63659	enterobacteriales	IncX1	98.66	374 / 374	DAPZQP010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465077-rid18893943.denovo.21, whole genome shotgun sequence	24683..25056																																																avrA	DAPZQP010000001.1	173549..174417	99.655	870	0						
GCA_032345735.1_PDT001830046.1_genomic.fna	Salmonella_enterica	0.521	307.235 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQQ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465075-rid18893923.denovo.06, whole genome shotgun sequence	63991..64428	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQQ010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465075-rid18893923.guided.32, whole genome shotgun sequence	714..1151	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQQ010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465075-rid18893923.denovo.19, whole genome shotgun sequence	63389..63648	enterobacteriales	IncX1	98.66	374 / 374	DAPZQQ010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465075-rid18893923.denovo.19, whole genome shotgun sequence	24683..25056																																																avrA	DAPZQQ010000005.1	173801..174669	99.655	870	0						
GCA_032345755.1_PDT001830047.1_genomic.fna	Salmonella_enterica	0.5213	199.829 KB	8	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQR010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465076-rid18893933.denovo.02, whole genome shotgun sequence	137211..137648	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQR010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465076-rid18893933.guided.38, whole genome shotgun sequence	6068..6505	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQR010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465076-rid18893933.denovo.22, whole genome shotgun sequence	63400..63659	enterobacteriales	IncX1	98.66	374 / 374	DAPZQR010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465076-rid18893933.denovo.22, whole genome shotgun sequence	24683..25056																																																avrA	DAPZQR010000007.1	173563..174431	99.655	870	0						
GCA_032345775.1_PDT001830000.1_genomic.fna	Salmonella_enterica	0.5209	263.699 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAPZQS010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465029-rid18893633.denovo.04, whole genome shotgun sequence	15405..15842	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAPZQS010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465029-rid18893633.guided.32, whole genome shotgun sequence	2461..2898	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAPZQS010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465029-rid18893633.denovo.19, whole genome shotgun sequence	63409..63668	enterobacteriales	IncX1	98.66	374 / 374	DAPZQS010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin isolate Salmonella Dublin SAMEA111465029-rid18893633.denovo.19, whole genome shotgun sequence	24683..25056																																																avrA	DAPZQS010000001.1	504456..505324	99.655	870	0						
GCA_032345795.1_PDT001829976.1_genomic.fna	Salmonella_enterica	0.5225	257.67 KB	7	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIIS010000001.1 Salmonella enterica strain PNUSAS366822 SAMN36718031-rid18893463.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNIIS010000044.1 Salmonella enterica strain PNUSAS366822 SAMN36718031-rid18893463.guided.28, whole genome shotgun sequence	12059..12496	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNIIS010000031.1 Salmonella enterica strain PNUSAS366822 SAMN36718031-rid18893463.denovo.34, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNIIS010000032.1 Salmonella enterica strain PNUSAS366822 SAMN36718031-rid18893463.denovo.35, whole genome shotgun sequence	2528..2639																																																avrA	ABNIIS010000004.1	174277..175145	99.425	870	0						
GCA_032345815.1_PDT001829975.1_genomic.fna	Salmonella_enterica	0.5223	355.413 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIIT010000001.1 Salmonella enterica strain PNUSAS366816 SAMN36718028-rid18893453.denovo.01, whole genome shotgun sequence	454799..455236	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIIT010000028.1 Salmonella enterica strain PNUSAS366816 SAMN36718028-rid18893453.guided.20, whole genome shotgun sequence	12491..12928	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIIT010000009.1	146983..147852	98.966	870	0						
GCA_032345835.1_PDT001829974.1_genomic.fna	Salmonella_enterica	0.5221	481.27 KB	3	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNIIU010000001.1 Salmonella enterica strain PNUSAS366823 SAMN36718026-rid18893443.denovo.01, whole genome shotgun sequence	450602..451039	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNIIU010000028.1 Salmonella enterica strain PNUSAS366823 SAMN36718026-rid18893443.guided.23, whole genome shotgun sequence	1672..2109	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032345855.1_PDT001829972.1_genomic.fna	Salmonella_enterica	0.5204	359.81 KB	5	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col156	aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIIV010000001.1 Salmonella enterica strain PNUSAS366817 SAMN36718029-rid18893423.denovo.01, whole genome shotgun sequence	543030..543467	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNIIV010000031.1 Salmonella enterica strain PNUSAS366817 SAMN36718029-rid18893423.guided.25, whole genome shotgun sequence	12768..13205	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNIIV010000025.1 Salmonella enterica strain PNUSAS366817 SAMN36718029-rid18893423.denovo.28, whole genome shotgun sequence	557..687	enterobacteriales	Col156	96.1	154 / 154	ABNIIV010000026.1 Salmonella enterica strain PNUSAS366817 SAMN36718029-rid18893423.denovo.29, whole genome shotgun sequence	483..636																																																avrA	ABNIIV010000002.1	600571..601440	99.425	870	0						
GCA_032345875.1_PDT001829977.1_genomic.fna	Salmonella_enterica	0.5211	406.339 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIIR010000001.1 Salmonella enterica strain PNUSAS366818 SAMN36718030-rid18893473.denovo.01, whole genome shotgun sequence	706588..707025	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIIR010000028.1 Salmonella enterica strain PNUSAS366818 SAMN36718030-rid18893473.guided.21, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIIR010000020.1 Salmonella enterica strain PNUSAS366818 SAMN36718030-rid18893473.denovo.22, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNIIR010000017.1 Salmonella enterica strain PNUSAS366818 SAMN36718030-rid18893473.denovo.17, whole genome shotgun sequence	37108..37369																																																avrA	ABNIIR010000002.1	553636..554505	99.54	870	0						
GCA_032345895.1_PDT001829970.1_genomic.fna	Salmonella_enterica	0.521	696.122 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIIW010000001.1 Salmonella enterica strain PNUSAS366824 SAMN36718002-rid18893403.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIIW010000017.1 Salmonella enterica strain PNUSAS366824 SAMN36718002-rid18893403.guided.12, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032345905.1_PDT001829969.1_genomic.fna	Salmonella_enterica	0.5213	407.022 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIIX010000001.1 Salmonella enterica strain PNUSAS366820 SAMN36718005-rid18893393.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIIX010000029.1 Salmonella enterica strain PNUSAS366820 SAMN36718005-rid18893393.guided.22, whole genome shotgun sequence	6260..6697	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIIX010000020.1 Salmonella enterica strain PNUSAS366820 SAMN36718005-rid18893393.denovo.20, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNIIX010000021.1 Salmonella enterica strain PNUSAS366820 SAMN36718005-rid18893393.denovo.23, whole genome shotgun sequence	3392..3653																																																avrA	ABNIIX010000002.1	553636..554505	99.54	870	0						
GCA_032345955.1_PDT001829967.1_genomic.fna	Salmonella_enterica	0.5214	405.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIIZ010000001.1 Salmonella enterica strain PNUSAS366819 SAMN36718004-rid18893373.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIIZ010000027.1 Salmonella enterica strain PNUSAS366819 SAMN36718004-rid18893373.guided.23, whole genome shotgun sequence	6642..7079	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIIZ010000020.1 Salmonella enterica strain PNUSAS366819 SAMN36718004-rid18893373.denovo.20, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABNIIZ010000022.1 Salmonella enterica strain PNUSAS366819 SAMN36718004-rid18893373.denovo.22, whole genome shotgun sequence	3413..3674																																																avrA	ABNIIZ010000002.1	553636..554505	99.54	870	0						
GCA_032345975.1_PDT001829968.1_genomic.fna	Salmonella_enterica	0.5205	235.697 KB	7	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncQ1,IncQ1	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIIY010000004.1 Salmonella enterica strain PNUSAS366828 SAMN36718007-rid18893383.denovo.04, whole genome shotgun sequence	202094..202531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIIY010000037.1 Salmonella enterica strain PNUSAS366828 SAMN36718007-rid18893383.guided.30, whole genome shotgun sequence	2967..3404	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncQ1	100	796 / 796	ABNIIY010000030.1 Salmonella enterica strain PNUSAS366828 SAMN36718007-rid18893383.denovo.31, whole genome shotgun sequence	3597..4392	enterobacteriales	IncQ1	100	796 / 796	ABNIIY010000038.1 Salmonella enterica strain PNUSAS366828 SAMN36718007-rid18893383.guided.32, whole genome shotgun sequence	1022..1817																																																avrA	ABNIIY010000009.1	136434..137303	98.966	870	0						
GCA_032345995.1_PDT001912948.1_genomic.fna	Salmonella_enterica	0.5228	324.823 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIJA010000001.1 Salmonella enterica strain PNUSAS388381 SAMN37663896-rid19587163.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIJA010000036.1 Salmonella enterica strain PNUSAS388381 SAMN37663896-rid19587163.guided.23, whole genome shotgun sequence	13025..13462	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNIJA010000016.1 Salmonella enterica strain PNUSAS388381 SAMN37663896-rid19587163.denovo.16, whole genome shotgun sequence	68708..68849																																																						avrA	ABNIJA010000004.1	150017..150886	99.655	870	0						
GCA_032346015.1_PDT001829973.1_genomic.fna	Salmonella_enterica	0.5148	171.652 KB	9	aroC_470,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2197	50:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_470	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABNIJB010000009.1 Salmonella enterica strain PNUSAS366825 SAMN36718025-rid18893433.denovo.09, whole genome shotgun sequence	5166..5603	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABNIJB010000074.1 Salmonella enterica strain PNUSAS366825 SAMN36718025-rid18893433.guided.50, whole genome shotgun sequence	1411..1848	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032346035.1_PDT001829971.1_genomic.fna	Salmonella_enterica	0.5201	266.875 KB	6	aroC_15,dnaN_126,hemD_101,hisD_88,purE_8,sucA_19,thrA_18	446	16:b:e,n,x	10	aac(6')-Iaa,aadA2,aadA1,aadA2,aac(6')-Iaa,aadA1,blaTEM-1B,blaTEM-1B,mph(A),mph(A),cmlA1,cmlA1,cmlA1,qnrS1,qnrS1,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12	0		3	IncFIA(HI1),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_126	hemD	100	100	hemD_101	hisD	100	100	hisD_88	purE	100	100	purE_8	sucA	100	100	sucA_19	thrA	100	100	thrA_18	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNIJC010000001.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.denovo.01, whole genome shotgun sequence	561002..561439	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNIJC010000028.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.denovo.29, whole genome shotgun sequence	6506..7297	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNIJC010000028.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.denovo.29, whole genome shotgun sequence	4101..4892	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABNIJC010000039.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.guided.31, whole genome shotgun sequence	2703..3494	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	98.4	438/438	ABNIJC010000040.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.guided.33, whole genome shotgun sequence	158..595	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNIJC010000042.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.guided.35, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	blaTEM-1B	100	861/861	ABNIJC010000026.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.denovo.27, whole genome shotgun sequence	18090..18950	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNIJC010000043.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.guided.36, whole genome shotgun sequence	1110..1970	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNIJC010000027.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.denovo.28, whole genome shotgun sequence	69..974	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	ABNIJC010000038.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.guided.30, whole genome shotgun sequence	110..1015	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	cmlA1	99.92	1260/1260	ABNIJC010000028.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.denovo.29, whole genome shotgun sequence	4985..6244	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNIJC010000039.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.guided.31, whole genome shotgun sequence	3756..5015	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNIJC010000042.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.guided.35, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	qnrS1	99.85	657/657	ABNIJC010000027.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.denovo.28, whole genome shotgun sequence	6564..7220	Ciprofloxacin	AB187515	qnrS1	99.85	657/657	ABNIJC010000038.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.guided.30, whole genome shotgun sequence	6605..7261	Ciprofloxacin	AB187515	sul3	100	792/792	ABNIJC010000028.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.denovo.29, whole genome shotgun sequence	1628..2419	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNIJC010000044.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.guided.37, whole genome shotgun sequence	1669..2460	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABNIJC010000026.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.denovo.27, whole genome shotgun sequence	14454..15653	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNIJC010000041.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.guided.34, whole genome shotgun sequence	1125..2324	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABNIJC010000028.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.denovo.29, whole genome shotgun sequence	7705..8202	Trimethoprim	AM040708	dfrA12	100	498/498	ABNIJC010000039.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.guided.31, whole genome shotgun sequence	1798..2295	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																									enterobacteriales	IncFIA(HI1)	100	388 / 388	ABNIJC010000026.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.denovo.27, whole genome shotgun sequence	1295..1682	enterobacteriales	IncHI1A	100	420 / 420	ABNIJC010000019.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.denovo.19, whole genome shotgun sequence	41616..42035		enterobacteriales	IncHI1B(R27)	100	540 / 540	ABNIJC010000019.1 Salmonella enterica strain PNUSAS366821 SAMN36718027-rid18893413.denovo.19, whole genome shotgun sequence	28000..28539	R27																																								avrA	ABNIJC010000010.1	169788..170657	99.77	870	0						
GCA_032346055.1_PDT001829966.1_genomic.fna	Salmonella_enterica	0.5191	224.781 KB	7	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIJD010000004.1 Salmonella enterica strain PNUSAS366826 SAMN36718003-rid18893363.denovo.04, whole genome shotgun sequence	277383..277820	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIJD010000046.1 Salmonella enterica strain PNUSAS366826 SAMN36718003-rid18893363.guided.31, whole genome shotgun sequence	15923..16360	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032346075.1_PDT001829965.1_genomic.fna	Salmonella_enterica	0.5214	324.304 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIJE010000002.1 Salmonella enterica strain PNUSAS366829 SAMN36718001-rid18893353.denovo.02, whole genome shotgun sequence	200058..200495	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIJE010000032.1 Salmonella enterica strain PNUSAS366829 SAMN36718001-rid18893353.guided.26, whole genome shotgun sequence	1117..1554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIJE010000023.1 Salmonella enterica strain PNUSAS366829 SAMN36718001-rid18893353.denovo.23, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNIJE010000024.1 Salmonella enterica strain PNUSAS366829 SAMN36718001-rid18893353.denovo.25, whole genome shotgun sequence	3413..3674																																																avrA	ABNIJE010000001.1	553624..554493	99.54	870	0						
GCA_032346095.1_PDT001829964.1_genomic.fna	Salmonella_enterica	0.5216	565.012 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNIJF010000001.1 Salmonella enterica strain PNUSAS366827 SAMN36718006-rid18893343.denovo.01, whole genome shotgun sequence	486958..487395	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNIJF010000023.1 Salmonella enterica strain PNUSAS366827 SAMN36718006-rid18893343.guided.20, whole genome shotgun sequence	14545..14982	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIJF010000002.1	544607..545475	99.425	870	0						
GCA_032346115.1_PDT001829963.1_genomic.fna	Salmonella_enterica	0.5199	451.159 KB	4	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	3	Col(pHAD28),ColpVC,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNIJG010000001.1 Salmonella enterica strain PNUSAS366786 SAMN36717702-rid18893333.denovo.01, whole genome shotgun sequence	384683..385120	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNIJG010000029.1 Salmonella enterica strain PNUSAS366786 SAMN36717702-rid18893333.guided.22, whole genome shotgun sequence	622..1059	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABNIJG010000007.1 Salmonella enterica strain PNUSAS366786 SAMN36717702-rid18893333.denovo.07, whole genome shotgun sequence	166241..166663	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNIJG010000031.1 Salmonella enterica strain PNUSAS366786 SAMN36717702-rid18893333.guided.24, whole genome shotgun sequence	10974..11396	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.15	113 / 131	ABNIJG010000021.1 Salmonella enterica strain PNUSAS366786 SAMN36717702-rid18893333.denovo.25, whole genome shotgun sequence	1410..1522	enterobacteriales	ColpVC	98.96	193 / 193	ABNIJG010000022.1 Salmonella enterica strain PNUSAS366786 SAMN36717702-rid18893333.denovo.26, whole genome shotgun sequence	805..997		enterobacteriales	IncX1	98.93	374 / 374	ABNIJG010000019.1 Salmonella enterica strain PNUSAS366786 SAMN36717702-rid18893333.denovo.19, whole genome shotgun sequence	6868..7241																																									avrA	ABNIJG010000002.1	518388..519257	99.54	870	0						
GCA_032346135.1_PDT001829962.1_genomic.fna	Salmonella_enterica	0.5212	476.615 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIJH010000001.1 Salmonella enterica strain PNUSAS366800 SAMN36717704-rid18893323.denovo.01, whole genome shotgun sequence	293165..293602	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIJH010000032.1 Salmonella enterica strain PNUSAS366800 SAMN36717704-rid18893323.guided.16, whole genome shotgun sequence	43392..43829	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIJH010000020.1 Salmonella enterica strain PNUSAS366800 SAMN36717704-rid18893323.denovo.22, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNIJH010000022.1 Salmonella enterica strain PNUSAS366800 SAMN36717704-rid18893323.denovo.24, whole genome shotgun sequence	3412..3673																																																avrA	ABNIJH010000002.1	506568..507437	99.54	870	0						
GCA_032346155.1_PDT001829961.1_genomic.fna	Salmonella_enterica	0.5212	192.463 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIJI010000006.1 Salmonella enterica strain PNUSAS366797 SAMN36717701-rid18893313.denovo.06, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIJI010000054.1 Salmonella enterica strain PNUSAS366797 SAMN36717701-rid18893313.guided.36, whole genome shotgun sequence	8806..9243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABNIJI010000041.1 Salmonella enterica strain PNUSAS366797 SAMN36717701-rid18893313.denovo.44, whole genome shotgun sequence	482..635																																																						avrA	ABNIJI010000004.1	183935..184803	99.77	870	0						
GCA_032346175.1_PDT001829960.1_genomic.fna	Salmonella_enterica	0.5214	406.455 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIJJ010000001.1 Salmonella enterica strain PNUSAS366792 SAMN36717703-rid18893303.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIJJ010000031.1 Salmonella enterica strain PNUSAS366792 SAMN36717703-rid18893303.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIJJ010000018.1 Salmonella enterica strain PNUSAS366792 SAMN36717703-rid18893303.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNIJJ010000020.1 Salmonella enterica strain PNUSAS366792 SAMN36717703-rid18893303.denovo.23, whole genome shotgun sequence	3415..3676																																																avrA	ABNIJJ010000002.1	553378..554247	99.54	870	0						
GCA_032346395.1_PDT001829949.1_genomic.fna	Salmonella_enterica	0.5194	139.536 KB	11	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIJV010000006.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309829 SAMN36717651-rid18893193.denovo.006, whole genome shotgun sequence	86590..87027	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIJV010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309829 SAMN36717651-rid18893193.denovo.051, whole genome shotgun sequence	12987..13823	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIJV010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309829 SAMN36717651-rid18893193.denovo.051, whole genome shotgun sequence	13823..14626	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNIJV010000124.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309829 SAMN36717651-rid18893193.guided.036, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIJV010000127.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309829 SAMN36717651-rid18893193.guided.068, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIJV010000127.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309829 SAMN36717651-rid18893193.guided.068, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNIJV010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309829 SAMN36717651-rid18893193.denovo.078, whole genome shotgun sequence	645..1850	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNIJV010000128.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309829 SAMN36717651-rid18893193.guided.077, whole genome shotgun sequence	2389..3594	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNIJV010000072.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309829 SAMN36717651-rid18893193.denovo.076, whole genome shotgun sequence	1732..2413	enterobacteriales	IncFII	96.95	262 / 261	ABNIJV010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309829 SAMN36717651-rid18893193.denovo.051, whole genome shotgun sequence	12103..12364		enterobacteriales	IncFII	96.95	262 / 261	ABNIJV010000127.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309829 SAMN36717651-rid18893193.guided.068, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNIJV010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309829 SAMN36717651-rid18893193.denovo.089, whole genome shotgun sequence	209..350		enterobacteriales	IncX1	100	373 / 373	ABNIJV010000062.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309829 SAMN36717651-rid18893193.denovo.065, whole genome shotgun sequence	2153..2525																											avrA	ABNIJV010000018.1	83056..83925	99.655	870	0						
GCA_032346435.1_PDT001829947.1_genomic.fna	Salmonella_enterica	0.5215	162.368 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIJW010000002.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309828 SAMN36717650-rid18893173.denovo.02, whole genome shotgun sequence	17216..17653	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIJW010000079.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309828 SAMN36717650-rid18893173.guided.30, whole genome shotgun sequence	30283..30720	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIJW010000062.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309828 SAMN36717650-rid18893173.denovo.65, whole genome shotgun sequence	1194..1836	enterobacteriales	IncFII(S)	100	262 / 262	ABNIJW010000052.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309828 SAMN36717650-rid18893173.denovo.55, whole genome shotgun sequence	7573..7834																																																avrA	ABNIJW010000010.1	98347..99216	99.54	870	0						
GCA_032346455.1_PDT001829946.1_genomic.fna	Salmonella_enterica	0.5215	98.236 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		4	Col156,Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIJX010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309826 SAMN36717648-rid18893163.denovo.001, whole genome shotgun sequence	83715..84152	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNIJX010000091.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309826 SAMN36717648-rid18893163.denovo.098, whole genome shotgun sequence	17..796	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNIJX010000099.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309826 SAMN36717648-rid18893163.guided.052, whole genome shotgun sequence	14160..14597	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNIJX010000104.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309826 SAMN36717648-rid18893163.guided.095, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNIJX010000086.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309826 SAMN36717648-rid18893163.denovo.092, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNIJX010000103.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309826 SAMN36717648-rid18893163.guided.091, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNIJX010000068.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309826 SAMN36717648-rid18893163.denovo.071, whole genome shotgun sequence	5127..6341	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNIJX010000102.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309826 SAMN36717648-rid18893163.guided.079, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNIJX010000101.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309826 SAMN36717648-rid18893163.guided.074, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNIJX010000068.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309826 SAMN36717648-rid18893163.denovo.071, whole genome shotgun sequence	3015..4190	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNIJX010000102.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309826 SAMN36717648-rid18893163.guided.079, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	Col156	94.81	154 / 154	ABNIJX010000077.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309826 SAMN36717648-rid18893163.denovo.082, whole genome shotgun sequence	791..944	enterobacteriales	Col440I	92.04	113 / 114	ABNIJX010000080.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309826 SAMN36717648-rid18893163.denovo.085, whole genome shotgun sequence	1334..1446		enterobacteriales	IncFIB(S)	100	643 / 643	ABNIJX010000055.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309826 SAMN36717648-rid18893163.denovo.057, whole genome shotgun sequence	6821..7463		enterobacteriales	IncFII(S)	100	262 / 262	ABNIJX010000063.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309826 SAMN36717648-rid18893163.denovo.066, whole genome shotgun sequence	9325..9586																																		avrA	ABNIJX010000003.1	122906..123775	99.885	870	0						
GCA_032346475.1_PDT001829944.1_genomic.fna	Salmonella_enterica	0.522	106.708 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	3	aac(6')-Iaa,aadA1,aac(6')-Iaa,aadA1,blaIMP-27,blaIMP-27	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIJZ010000005.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309825 SAMN36717647-rid18893143.denovo.05, whole genome shotgun sequence	175606..176043	Amikacin, Tobramycin	NC_003197	aadA1	100	789/789	ABNIJZ010000019.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309825 SAMN36717647-rid18893143.denovo.19, whole genome shotgun sequence	49838..50626	Spectinomycin, Streptomycin	JQ480156	aac(6')-Iaa	97.49	438/438	ABNIJZ010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309825 SAMN36717647-rid18893143.guided.41, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197	aadA1	100	789/789	ABNIJZ010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309825 SAMN36717647-rid18893143.guided.43, whole genome shotgun sequence	12645..13433	Spectinomycin, Streptomycin	JQ480156	blaIMP-27	100	741/741	ABNIJZ010000019.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309825 SAMN36717647-rid18893143.denovo.19, whole genome shotgun sequence	48447..49187	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam	JF894248	blaIMP-27	100	741/741	ABNIJZ010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309825 SAMN36717647-rid18893143.guided.43, whole genome shotgun sequence	11254..11994	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam	JF894248																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIJZ010000003.1	130202..131071	99.655	870	0						
GCA_032346495.1_PDT001829945.1_genomic.fna	Salmonella_enterica	0.5206	177.829 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIJY010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309827 SAMN36717649-rid18893153.denovo.04, whole genome shotgun sequence	100832..101269	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIJY010000062.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309827 SAMN36717649-rid18893153.guided.30, whole genome shotgun sequence	15216..15653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIJY010000037.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309827 SAMN36717649-rid18893153.denovo.40, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNIJY010000041.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309827 SAMN36717649-rid18893153.denovo.44, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	98.93	374 / 374	ABNIJY010000031.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309827 SAMN36717649-rid18893153.denovo.32, whole genome shotgun sequence	32011..32384																																									avrA	ABNIJY010000007.1	149415..150284	99.54	870	0						
GCA_032346515.1_PDT001829943.1_genomic.fna	Salmonella_enterica	0.5219	124.157 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIKB010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309824 SAMN36717646-rid18893133.denovo.001, whole genome shotgun sequence	477956..478393	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNIKB010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309824 SAMN36717646-rid18893133.denovo.040, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIKB010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309824 SAMN36717646-rid18893133.denovo.040, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNIKB010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309824 SAMN36717646-rid18893133.guided.032, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNIKB010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309824 SAMN36717646-rid18893133.guided.062, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIKB010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309824 SAMN36717646-rid18893133.guided.062, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNIKB010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309824 SAMN36717646-rid18893133.denovo.073, whole genome shotgun sequence	901..1776	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNIKB010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309824 SAMN36717646-rid18893133.guided.072, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNIKB010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309824 SAMN36717646-rid18893133.denovo.081, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABNIKB010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309824 SAMN36717646-rid18893133.guided.080, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABNIKB010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309824 SAMN36717646-rid18893133.denovo.040, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNIKB010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309824 SAMN36717646-rid18893133.guided.062, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNIKB010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309824 SAMN36717646-rid18893133.denovo.040, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNIKB010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309824 SAMN36717646-rid18893133.guided.057, whole genome shotgun sequence	6946..8145	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNIKB010000057.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309824 SAMN36717646-rid18893133.denovo.061, whole genome shotgun sequence	6982..7541																																																						avrA	ABNIKB010000003.1	95066..95935	99.655	870	0						
GCA_032346535.1_PDT001829942.1_genomic.fna	Salmonella_enterica	0.5226	79.857 KB	20	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIKA010000024.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313652 SAMN36717645-rid18893123.denovo.024, whole genome shotgun sequence	52276..52713	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNIKA010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313652 SAMN36717645-rid18893123.denovo.063, whole genome shotgun sequence	22834..23625	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIKA010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313652 SAMN36717645-rid18893123.denovo.063, whole genome shotgun sequence	22834..23625	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNIKA010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313652 SAMN36717645-rid18893123.denovo.105, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNIKA010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313652 SAMN36717645-rid18893123.denovo.105, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNIKA010000139.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313652 SAMN36717645-rid18893123.guided.096, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNIKA010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313652 SAMN36717645-rid18893123.guided.101, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIKA010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313652 SAMN36717645-rid18893123.guided.101, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNIKA010000142.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313652 SAMN36717645-rid18893123.guided.108, whole genome shotgun sequence	247..1272	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNIKA010000143.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313652 SAMN36717645-rid18893123.guided.133, whole genome shotgun sequence	87..863	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNIKA010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313652 SAMN36717645-rid18893123.denovo.063, whole genome shotgun sequence	21490..22329	Sulfamethoxazole	U12338	sul1	100	840/840	ABNIKA010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313652 SAMN36717645-rid18893123.guided.101, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNIKA010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313652 SAMN36717645-rid18893123.denovo.063, whole genome shotgun sequence	7774..8973	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNIKA010000138.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313652 SAMN36717645-rid18893123.guided.087, whole genome shotgun sequence	1920..3119	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNIKA010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313652 SAMN36717645-rid18893123.denovo.077, whole genome shotgun sequence	9491..10050																																																						avrA	ABNIKA010000009.1	39534..40403	99.655	870	0						
GCA_032346555.1_PDT001829941.1_genomic.fna	Salmonella_enterica	0.5209	56.646 KB	27	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIKC010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313649 SAMN36717642-rid18893113.denovo.074, whole genome shotgun sequence	7357..7794	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIKC010000203.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313649 SAMN36717642-rid18893113.guided.076, whole genome shotgun sequence	7385..7822	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNIKC010000127.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313649 SAMN36717642-rid18893113.denovo.130, whole genome shotgun sequence	3094..3224	enterobacteriales	IncHI2A	99.52	630 / 630	ABNIKC010000095.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313649 SAMN36717642-rid18893113.denovo.098, whole genome shotgun sequence	2849..3478		enterobacteriales	IncX1	100	373 / 373	ABNIKC010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313649 SAMN36717642-rid18893113.denovo.144, whole genome shotgun sequence	2690..3062																																									avrA	ABNIKC010000013.1	80233..81102	99.655	870	0						
GCA_032346575.1_PDT001829940.1_genomic.fna	Salmonella_enterica	0.5231	60.457 KB	25	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIKD010000022.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313650 SAMN36717643-rid18893103.denovo.022, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNIKD010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313650 SAMN36717643-rid18893103.denovo.095, whole genome shotgun sequence	12006..12797	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIKD010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313650 SAMN36717643-rid18893103.denovo.095, whole genome shotgun sequence	12006..12797	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNIKD010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313650 SAMN36717643-rid18893103.denovo.130, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNIKD010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313650 SAMN36717643-rid18893103.denovo.130, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNIKD010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313650 SAMN36717643-rid18893103.guided.041, whole genome shotgun sequence	32275..32712	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNIKD010000160.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313650 SAMN36717643-rid18893103.guided.096, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIKD010000160.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313650 SAMN36717643-rid18893103.guided.096, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNIKD010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313650 SAMN36717643-rid18893103.guided.128, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNIKD010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313650 SAMN36717643-rid18893103.guided.128, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNIKD010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313650 SAMN36717643-rid18893103.denovo.095, whole genome shotgun sequence	10662..11501	Sulfamethoxazole	U12338	sul1	100	840/840	ABNIKD010000160.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313650 SAMN36717643-rid18893103.guided.096, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNIKD010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313650 SAMN36717643-rid18893103.denovo.103, whole genome shotgun sequence	1801..3000	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNIKD010000162.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313650 SAMN36717643-rid18893103.guided.120, whole genome shotgun sequence	1832..3031	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNIKD010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313650 SAMN36717643-rid18893103.denovo.086, whole genome shotgun sequence	14005..14564																																																						avrA	ABNIKD010000033.1	39683..40552	99.655	870	0						
GCA_032346595.1_PDT001829939.1_genomic.fna	Salmonella_enterica	0.5218	97.11 KB	19	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,floR,floR	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIKE010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313651 SAMN36717644-rid18893093.denovo.003, whole genome shotgun sequence	15514..15951	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIKE010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313651 SAMN36717644-rid18893093.guided.064, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	ABNIKE010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313651 SAMN36717644-rid18893093.denovo.089, whole genome shotgun sequence	2852..4065	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIKE010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313651 SAMN36717644-rid18893093.guided.091, whole genome shotgun sequence	1806..3019	Chloramphenicol, Florfenicol	AF118107																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNIKE010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313651 SAMN36717644-rid18893093.denovo.084, whole genome shotgun sequence	5564..6123																																																						avrA	ABNIKE010000024.1	39524..40393	99.655	870	0						
GCA_032346615.1_PDT001829937.1_genomic.fna	Salmonella_enterica	0.5211	50.467 KB	29	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIKF010000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313622 SAMN36717559-rid18893073.denovo.009, whole genome shotgun sequence	12445..12882	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIKF010000117.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313622 SAMN36717559-rid18893073.denovo.120, whole genome shotgun sequence	4191..5027	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIKF010000117.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313622 SAMN36717559-rid18893073.denovo.120, whole genome shotgun sequence	5027..5830	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNIKF010000212.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313622 SAMN36717559-rid18893073.guided.059, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIKF010000215.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313622 SAMN36717559-rid18893073.guided.130, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIKF010000215.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313622 SAMN36717559-rid18893073.guided.130, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNIKF010000143.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313622 SAMN36717559-rid18893073.denovo.148, whole genome shotgun sequence	2202..3407	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNIKF010000216.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313622 SAMN36717559-rid18893073.guided.147, whole genome shotgun sequence	2233..3438	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNIKF010000108.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313622 SAMN36717559-rid18893073.denovo.111, whole genome shotgun sequence	6727..7408	enterobacteriales	IncFII	96.95	262 / 261	ABNIKF010000117.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313622 SAMN36717559-rid18893073.denovo.120, whole genome shotgun sequence	3307..3568		enterobacteriales	IncFII	96.95	262 / 261	ABNIKF010000215.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313622 SAMN36717559-rid18893073.guided.130, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNIKF010000162.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313622 SAMN36717559-rid18893073.denovo.167, whole genome shotgun sequence	142..283		enterobacteriales	IncX1	100	373 / 373	ABNIKF010000150.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313622 SAMN36717559-rid18893073.denovo.155, whole genome shotgun sequence	2732..3104																											avrA	ABNIKF010000032.1	39484..40353	99.655	870	0						
GCA_032346635.1_PDT001829935.1_genomic.fna	Salmonella_enterica	0.521	59.015 KB	29	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIKG010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313647 SAMN36717561-rid18893053.denovo.012, whole genome shotgun sequence	82930..83367	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIKG010000103.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313647 SAMN36717561-rid18893053.denovo.106, whole genome shotgun sequence	5745..6581	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIKG010000103.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313647 SAMN36717561-rid18893053.denovo.106, whole genome shotgun sequence	6581..7384	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNIKG010000191.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313647 SAMN36717561-rid18893053.guided.058, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIKG010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313647 SAMN36717561-rid18893053.guided.121, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIKG010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313647 SAMN36717561-rid18893053.guided.121, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNIKG010000143.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313647 SAMN36717561-rid18893053.denovo.148, whole genome shotgun sequence	1853..3058	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNIKG010000195.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313647 SAMN36717561-rid18893053.guided.147, whole genome shotgun sequence	1867..3072	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNIKG010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313647 SAMN36717561-rid18893053.denovo.145, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNIKG010000103.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313647 SAMN36717561-rid18893053.denovo.106, whole genome shotgun sequence	4861..5122		enterobacteriales	IncFII	96.95	262 / 261	ABNIKG010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313647 SAMN36717561-rid18893053.guided.121, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNIKG010000139.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313647 SAMN36717561-rid18893053.denovo.143, whole genome shotgun sequence	247..388		enterobacteriales	IncX1	100	373 / 373	ABNIKG010000148.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313647 SAMN36717561-rid18893053.denovo.153, whole genome shotgun sequence	2732..3104																											avrA	ABNIKG010000026.1	39484..40353	99.655	870	0						
GCA_032346655.1_PDT001829933.1_genomic.fna	Salmonella_enterica	0.5231	67.917 KB	23	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIKJ010000003.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313621 SAMN36717558-rid18893033.denovo.003, whole genome shotgun sequence	17246..17683	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIKJ010000142.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313621 SAMN36717558-rid18893033.guided.063, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIKJ010000107.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313621 SAMN36717558-rid18893033.denovo.110, whole genome shotgun sequence	2212..2854	enterobacteriales	IncFII(S)	100	262 / 262	ABNIKJ010000099.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313621 SAMN36717558-rid18893033.denovo.102, whole genome shotgun sequence	3395..3656																																																avrA	ABNIKJ010000039.1	43550..44419	99.54	870	0						
GCA_032346675.1_PDT001829932.1_genomic.fna	Salmonella_enterica	0.5217	404.256 KB	6	aroC_4,dnaN_164,hemD_134,hisD_195,purE_132,sucA_46,thrA_158	544	8:z10:z6	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440I,Col440I	aroC	100	100	aroC_4	dnaN	100	100	dnaN_164	hemD	100	100	hemD_134	hisD	100	100	hisD_195	purE	100	100	purE_132	sucA	100	100	sucA_46	thrA	100	100	thrA_158	8	z10	z6	Salmonella enterica subspecies enterica (subspecies I)	Molade or Wippra	The predicted serotypes share the same general formula: 8:z10:z6 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNIKI010000001.1 Salmonella enterica strain W217-3-1 SAMN36717551-rid18893023.denovo.01, whole genome shotgun sequence	249272..249709	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNIKI010000033.1 Salmonella enterica strain W217-3-1 SAMN36717551-rid18893023.guided.21, whole genome shotgun sequence	16500..16937	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNIKI010000003.1 Salmonella enterica strain W217-3-1 SAMN36717551-rid18893023.denovo.03, whole genome shotgun sequence	396020..396442	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNIKI010000032.1 Salmonella enterica strain W217-3-1 SAMN36717551-rid18893023.guided.20, whole genome shotgun sequence	18631..19053	Fosfomycin	LAPJ01000014	qnrB19	100	645/645	ABNIKI010000023.1 Salmonella enterica strain W217-3-1 SAMN36717551-rid18893023.denovo.27, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIKI010000035.1 Salmonella enterica strain W217-3-1 SAMN36717551-rid18893023.guided.28, whole genome shotgun sequence	606..1250	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNIKI010000020.1 Salmonella enterica strain W217-3-1 SAMN36717551-rid18893023.denovo.24, whole genome shotgun sequence	3785..3915	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIKI010000023.1 Salmonella enterica strain W217-3-1 SAMN36717551-rid18893023.denovo.27, whole genome shotgun sequence	1522..1652		enterobacteriales	Col440I	90.27	113 / 114	ABNIKI010000021.1 Salmonella enterica strain W217-3-1 SAMN36717551-rid18893023.denovo.25, whole genome shotgun sequence	3345..3457		enterobacteriales	Col440I	90.2	102 / 114	ABNIKI010000035.1 Salmonella enterica strain W217-3-1 SAMN36717551-rid18893023.guided.28, whole genome shotgun sequence	1..102																																		avrA	ABNIKI010000011.1	39305..40174	99.195	870	0						
GCA_032346695.1_PDT001829931.1_genomic.fna	Salmonella_enterica	0.5169	250.493 KB	7	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_81	9482	-:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_81	-	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV -:z4,z32:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABNIKH010000001.1 Salmonella enterica strain W216-14-1 SAMN36717554-rid18893013.denovo.01, whole genome shotgun sequence	165713..166150	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABNIKH010000061.1 Salmonella enterica strain W216-14-1 SAMN36717554-rid18893013.guided.25, whole genome shotgun sequence	3917..4354	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032346715.1_PDT001829930.1_genomic.fna	Salmonella_enterica	0.5216	243.178 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIKK010000001.1 Salmonella enterica strain W216-18-1 SAMN36717553-rid18893003.denovo.01, whole genome shotgun sequence	306276..306713	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIKK010000048.1 Salmonella enterica strain W216-18-1 SAMN36717553-rid18893003.guided.32, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNIKK010000018.1 Salmonella enterica strain W216-18-1 SAMN36717553-rid18893003.denovo.18, whole genome shotgun sequence	36049..36691	enterobacteriales	IncFII(S)	100	262 / 262	ABNIKK010000018.1 Salmonella enterica strain W216-18-1 SAMN36717553-rid18893003.denovo.18, whole genome shotgun sequence	51776..52037																																																avrA	ABNIKK010000004.1	174640..175509	99.885	870	0						
GCA_032346735.1_PDT001829929.1_genomic.fna	Salmonella_enterica	0.5213	192.031 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIKL010000003.1 Salmonella enterica strain W216-12-1 SAMN36717552-rid18892993.denovo.03, whole genome shotgun sequence	145403..145840	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIKL010000061.1 Salmonella enterica strain W216-12-1 SAMN36717552-rid18892993.guided.43, whole genome shotgun sequence	2005..2442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNIKL010000018.1 Salmonella enterica strain W216-12-1 SAMN36717552-rid18892993.denovo.18, whole genome shotgun sequence	36049..36691	enterobacteriales	IncFII(S)	100	262 / 262	ABNIKL010000018.1 Salmonella enterica strain W216-12-1 SAMN36717552-rid18892993.denovo.18, whole genome shotgun sequence	51776..52037																																																avrA	ABNIKL010000002.1	110229..111098	99.885	870	0						
GCA_032346755.1_PDT001829926.1_genomic.fna	Salmonella_enterica	0.5172	227.824 KB	8	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_81	9482	-:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_81	-	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV -:z4,z32:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABNIKO010000001.1 Salmonella enterica strain W215-11-1 SAMN36717550-rid18892963.denovo.01, whole genome shotgun sequence	201371..201808	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABNIKO010000062.1 Salmonella enterica strain W215-11-1 SAMN36717550-rid18892963.guided.34, whole genome shotgun sequence	4352..4789	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032346795.1_PDT001829928.1_genomic.fna	Salmonella_enterica	0.5228	75.735 KB	20	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIKM010000021.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313619 SAMN36717555-rid18892983.denovo.021, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNIKM010000115.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313619 SAMN36717555-rid18892983.guided.060, whole genome shotgun sequence	14483..14920	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIKM010000037.1	43551..44420	99.425	870	0						
GCA_032346805.1_PDT001829927.1_genomic.fna	Salmonella_enterica	0.5217	62.634 KB	26	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	-:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		3	Col(pHAD28),ColRNAI,IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	-	Salmonella enterica subspecies enterica (subspecies I)	I -:i:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIKN010000058.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313618 SAMN36717556-rid18892973.denovo.059, whole genome shotgun sequence	15511..15948	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIKN010000120.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313618 SAMN36717556-rid18892973.denovo.125, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIKN010000120.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313618 SAMN36717556-rid18892973.denovo.125, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNIKN010000158.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313618 SAMN36717556-rid18892973.guided.083, whole genome shotgun sequence	15501..15938	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIKN010000160.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313618 SAMN36717556-rid18892973.guided.124, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIKN010000160.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313618 SAMN36717556-rid18892973.guided.124, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNIKN010000135.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313618 SAMN36717556-rid18892973.denovo.141, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNIKN010000161.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313618 SAMN36717556-rid18892973.guided.140, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNIKN010000120.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313618 SAMN36717556-rid18892973.denovo.125, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNIKN010000160.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313618 SAMN36717556-rid18892973.guided.124, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNIKN010000081.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313618 SAMN36717556-rid18892973.denovo.084, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNIKN010000159.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313618 SAMN36717556-rid18892973.guided.101, whole genome shotgun sequence	2249..3454	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNIKN010000108.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313618 SAMN36717556-rid18892973.denovo.112, whole genome shotgun sequence	1326..1445	enterobacteriales	ColRNAI	90.08	131 / 130	ABNIKN010000118.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313618 SAMN36717556-rid18892973.denovo.122, whole genome shotgun sequence	4021..4151		enterobacteriales	IncY	99.74	765 / 765	ABNIKN010000091.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313618 SAMN36717556-rid18892973.denovo.094, whole genome shotgun sequence	12952..13716																																									avrA	ABNIKN010000004.1	93863..94732	99.885	870	0						
GCA_032346835.1_PDT001829925.1_genomic.fna	Salmonella_enterica	0.5168	250.433 KB	7	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_81	9482	-:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_81	-	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV -:z4,z32:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABNIKQ010000001.1 Salmonella enterica strain W216-11-1 SAMN36717549-rid18892953.denovo.01, whole genome shotgun sequence	201422..201859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABNIKQ010000065.1 Salmonella enterica strain W216-11-1 SAMN36717549-rid18892953.guided.31, whole genome shotgun sequence	2551..2988	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032346855.1_PDT001829924.1_genomic.fna	Salmonella_enterica	0.5225	257.115 KB	7	aroC_13,dnaN_11,hemD_25,hisD_197,purE_12,sucA_71,thrA_4	548	21:b:e,n,x	5	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,qnrB19,qnrB19,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_197	purE	100	100	purE_12	sucA	100	100	sucA_71	thrA	100	100	thrA_4	21	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Minnesota		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIKP010000002.1 Salmonella enterica strain W221-18-1 SAMN36717546-rid18892943.denovo.02, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIKP010000050.1 Salmonella enterica strain W221-18-1 SAMN36717546-rid18892943.guided.36, whole genome shotgun sequence	2005..2442	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNIKP010000029.1 Salmonella enterica strain W221-18-1 SAMN36717546-rid18892943.denovo.29, whole genome shotgun sequence	21209..22354	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNIKP010000051.1 Salmonella enterica strain W221-18-1 SAMN36717546-rid18892943.guided.38, whole genome shotgun sequence	157..1302	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	qnrB19	100	645/645	ABNIKP010000037.1 Salmonella enterica strain W221-18-1 SAMN36717546-rid18892943.denovo.43, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIKP010000052.1 Salmonella enterica strain W221-18-1 SAMN36717546-rid18892943.guided.42, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABNIKP010000031.1 Salmonella enterica strain W221-18-1 SAMN36717546-rid18892943.denovo.33, whole genome shotgun sequence	7574..8389	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIKP010000048.1 Salmonella enterica strain W221-18-1 SAMN36717546-rid18892943.guided.32, whole genome shotgun sequence	7615..8430	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNIKP010000031.1 Salmonella enterica strain W221-18-1 SAMN36717546-rid18892943.denovo.33, whole genome shotgun sequence	10566..11765	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNIKP010000048.1 Salmonella enterica strain W221-18-1 SAMN36717546-rid18892943.guided.32, whole genome shotgun sequence	10607..11806	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIKP010000037.1 Salmonella enterica strain W221-18-1 SAMN36717546-rid18892943.denovo.43, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIKP010000052.1 Salmonella enterica strain W221-18-1 SAMN36717546-rid18892943.guided.42, whole genome shotgun sequence	2334..2464		enterobacteriales	IncC	100	417 / 417	ABNIKP010000024.1 Salmonella enterica strain W221-18-1 SAMN36717546-rid18892943.denovo.24, whole genome shotgun sequence	38349..38765																																									avrA	ABNIKP010000001.1	504059..504928	99.31	870	0						
GCA_032346875.1_PDT001829923.1_genomic.fna	Salmonella_enterica	0.5221	711.782 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIKR010000001.1 Salmonella enterica strain W217-10-1 SAMN36717547-rid18892933.denovo.01, whole genome shotgun sequence	645017..645454	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIKR010000016.1 Salmonella enterica strain W217-10-1 SAMN36717547-rid18892933.guided.10, whole genome shotgun sequence	14604..15041	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIKR010000003.1	560262..561132	99.656	871	0						
GCA_032346895.1_PDT001829921.1_genomic.fna	Salmonella_enterica	0.5217	409.779 KB	4	aroC_347,dnaN_394,hemD_78,hisD_496,purE_426,sucA_9,thrA_102	1549	8:r:z6	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_347	dnaN	100	100	dnaN_394	hemD	100	100	hemD_78	hisD	100	100	hisD_496	purE	100	100	purE_426	sucA	100	100	sucA_9	thrA	100	100	thrA_102	8	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Altona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIKT010000001.1 Salmonella enterica strain MPSPSA2192-2 SAMN36717541-rid18892913.denovo.01, whole genome shotgun sequence	139666..140103	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIKT010000036.1 Salmonella enterica strain MPSPSA2192-2 SAMN36717541-rid18892913.guided.26, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIKT010000027.1 Salmonella enterica strain MPSPSA2192-2 SAMN36717541-rid18892913.denovo.31, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIKT010000037.1 Salmonella enterica strain MPSPSA2192-2 SAMN36717541-rid18892913.guided.30, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIKT010000027.1 Salmonella enterica strain MPSPSA2192-2 SAMN36717541-rid18892913.denovo.31, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIKT010000037.1 Salmonella enterica strain MPSPSA2192-2 SAMN36717541-rid18892913.guided.30, whole genome shotgun sequence	2044..2174																																																avrA	ABNIKT010000003.1	401093..401962	99.195	870	0						
GCA_032346915.1_PDT001829922.1_genomic.fna	Salmonella_enterica	0.5217	404.552 KB	4	aroC_4,dnaN_164,hemD_134,hisD_195,purE_132,sucA_46,thrA_158	544	8:z10:z6	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440I,Col440I	aroC	100	100	aroC_4	dnaN	100	100	dnaN_164	hemD	100	100	hemD_134	hisD	100	100	hisD_195	purE	100	100	purE_132	sucA	100	100	sucA_46	thrA	100	100	thrA_158	8	z10	z6	Salmonella enterica subspecies enterica (subspecies I)	Molade or Wippra	The predicted serotypes share the same general formula: 8:z10:z6 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNIKS010000001.1 Salmonella enterica strain W217-5-1 SAMN36717543-rid18892923.denovo.01, whole genome shotgun sequence	344043..344480	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNIKS010000035.1 Salmonella enterica strain W217-5-1 SAMN36717543-rid18892923.guided.21, whole genome shotgun sequence	12989..13426	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNIKS010000003.1 Salmonella enterica strain W217-5-1 SAMN36717543-rid18892923.denovo.03, whole genome shotgun sequence	396020..396442	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNIKS010000034.1 Salmonella enterica strain W217-5-1 SAMN36717543-rid18892923.guided.20, whole genome shotgun sequence	18631..19053	Fosfomycin	LAPJ01000014	qnrB19	100	645/645	ABNIKS010000022.1 Salmonella enterica strain W217-5-1 SAMN36717543-rid18892923.denovo.26, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIKS010000037.1 Salmonella enterica strain W217-5-1 SAMN36717543-rid18892923.guided.28, whole genome shotgun sequence	606..1250	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNIKS010000020.1 Salmonella enterica strain W217-5-1 SAMN36717543-rid18892923.denovo.24, whole genome shotgun sequence	3785..3915	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIKS010000022.1 Salmonella enterica strain W217-5-1 SAMN36717543-rid18892923.denovo.26, whole genome shotgun sequence	1522..1652		enterobacteriales	Col440I	90.27	113 / 114	ABNIKS010000021.1 Salmonella enterica strain W217-5-1 SAMN36717543-rid18892923.denovo.25, whole genome shotgun sequence	3345..3457		enterobacteriales	Col440I	90.2	102 / 114	ABNIKS010000037.1 Salmonella enterica strain W217-5-1 SAMN36717543-rid18892923.guided.28, whole genome shotgun sequence	1..102																																		avrA	ABNIKS010000002.1	140422..141291	99.195	870	0						
GCA_032346935.1_PDT001829920.1_genomic.fna	Salmonella_enterica	0.5169	250.127 KB	8	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_81	9482	-:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_81	-	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV -:z4,z32:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABNIKU010000005.1 Salmonella enterica strain W215-21-1 SAMN36717544-rid18892903.denovo.05, whole genome shotgun sequence	165723..166160	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABNIKU010000070.1 Salmonella enterica strain W215-21-1 SAMN36717544-rid18892903.guided.36, whole genome shotgun sequence	4352..4789	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032346955.1_PDT001829919.1_genomic.fna	Salmonella_enterica	0.5207	440.752 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_547	2370	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_547	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIKV010000004.1 Salmonella enterica strain W221-10-1 SAMN36717542-rid18892893.denovo.04, whole genome shotgun sequence	318132..318569	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIKV010000029.1 Salmonella enterica strain W221-10-1 SAMN36717542-rid18892893.guided.20, whole genome shotgun sequence	30963..31400	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIKV010000014.1	93874..94743	99.195	870	0						
GCA_032346975.1_PDT001829918.1_genomic.fna	Salmonella_enterica	0.5216	554.468 KB	4	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNIKW010000004.1 Salmonella enterica strain W217-4-1 SAMN36717548-rid18892883.denovo.04, whole genome shotgun sequence	135912..136349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNIKW010000025.1 Salmonella enterica strain W217-4-1 SAMN36717548-rid18892883.guided.17, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIKW010000003.1	650514..651383	99.31	870	0						
GCA_032346995.1_PDT001829917.1_genomic.fna	Salmonella_enterica	0.5216	524.505 KB	4	aroC_347,dnaN_394,hemD_78,hisD_496,purE_426,sucA_9,thrA_102	1549	8:r:z6	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_347	dnaN	100	100	dnaN_394	hemD	100	100	hemD_78	hisD	100	100	hisD_496	purE	100	100	purE_426	sucA	100	100	sucA_9	thrA	100	100	thrA_102	8	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Altona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIKX010000001.1 Salmonella enterica strain MPSPSA2192-3 SAMN36717545-rid18892873.denovo.01, whole genome shotgun sequence	736224..736661	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIKX010000034.1 Salmonella enterica strain MPSPSA2192-3 SAMN36717545-rid18892873.guided.23, whole genome shotgun sequence	15888..16325	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIKX010000026.1 Salmonella enterica strain MPSPSA2192-3 SAMN36717545-rid18892873.denovo.30, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIKX010000036.1 Salmonella enterica strain MPSPSA2192-3 SAMN36717545-rid18892873.guided.29, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIKX010000026.1 Salmonella enterica strain MPSPSA2192-3 SAMN36717545-rid18892873.denovo.30, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIKX010000036.1 Salmonella enterica strain MPSPSA2192-3 SAMN36717545-rid18892873.guided.29, whole genome shotgun sequence	2044..2174																																																avrA	ABNIKX010000004.1	500316..501185	99.195	870	0						
GCA_032347035.1_PDT001829914.1_genomic.fna	Salmonella_enterica	0.5217	366.635 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_547	2370	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_547	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNILB010000001.1 Salmonella enterica strain W240-23-1 SAMN36717520-rid18892383.denovo.01, whole genome shotgun sequence	726523..726960	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNILB010000039.1 Salmonella enterica strain W240-23-1 SAMN36717520-rid18892383.guided.20, whole genome shotgun sequence	31475..31912	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNILB010000012.1	93876..94745	99.195	870	0						
GCA_032347055.1_PDT001829915.1_genomic.fna	Salmonella_enterica	0.5227	290.009 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNILA010000001.1 Salmonella enterica strain MPSPSA2191-3 SAMN36717517-rid18892393.denovo.01, whole genome shotgun sequence	222438..222875	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNILA010000038.1 Salmonella enterica strain MPSPSA2191-3 SAMN36717517-rid18892393.guided.24, whole genome shotgun sequence	4199..4636	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNILA010000004.1	28833..29702	98.966	870	0						
GCA_032347075.1_PDT001829916.1_genomic.fna	Salmonella_enterica	0.5226	270.869 KB	6	aroC_13,dnaN_11,hemD_25,hisD_197,purE_12,sucA_71,thrA_4	548	21:b:e,n,x	5	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,qnrB19,qnrB19,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_197	purE	100	100	purE_12	sucA	100	100	sucA_71	thrA	100	100	thrA_4	21	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Minnesota		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIKY010000003.1 Salmonella enterica strain W221-1-1 SAMN36717513-rid18892403.denovo.03, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIKY010000039.1 Salmonella enterica strain W221-1-1 SAMN36717513-rid18892403.guided.28, whole genome shotgun sequence	4842..5279	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNIKY010000021.1 Salmonella enterica strain W221-1-1 SAMN36717513-rid18892403.denovo.21, whole genome shotgun sequence	42079..43224	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNIKY010000038.1 Salmonella enterica strain W221-1-1 SAMN36717513-rid18892403.guided.27, whole genome shotgun sequence	157..1302	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	qnrB19	100	645/645	ABNIKY010000028.1 Salmonella enterica strain W221-1-1 SAMN36717513-rid18892403.denovo.34, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIKY010000042.1 Salmonella enterica strain W221-1-1 SAMN36717513-rid18892403.guided.33, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABNIKY010000019.1 Salmonella enterica strain W221-1-1 SAMN36717513-rid18892403.denovo.19, whole genome shotgun sequence	7574..8389	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIKY010000040.1 Salmonella enterica strain W221-1-1 SAMN36717513-rid18892403.guided.29, whole genome shotgun sequence	685..1500	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNIKY010000019.1 Salmonella enterica strain W221-1-1 SAMN36717513-rid18892403.denovo.19, whole genome shotgun sequence	10566..11765	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNIKY010000040.1 Salmonella enterica strain W221-1-1 SAMN36717513-rid18892403.guided.29, whole genome shotgun sequence	3677..4876	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIKY010000028.1 Salmonella enterica strain W221-1-1 SAMN36717513-rid18892403.denovo.34, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIKY010000042.1 Salmonella enterica strain W221-1-1 SAMN36717513-rid18892403.guided.33, whole genome shotgun sequence	2334..2464		enterobacteriales	IncC	100	417 / 417	ABNIKY010000019.1 Salmonella enterica strain W221-1-1 SAMN36717513-rid18892403.denovo.19, whole genome shotgun sequence	53355..53771																																									avrA	ABNIKY010000001.1	504059..504928	99.31	870	0						
GCA_032347095.1_PDT001829913.1_genomic.fna	Salmonella_enterica	0.521	246.326 KB	8	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_547	2370	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_547	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNILC010000008.1 Salmonella enterica strain W221-2-1 SAMN36717519-rid18892863.denovo.08, whole genome shotgun sequence	100601..101038	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNILC010000039.1 Salmonella enterica strain W221-2-1 SAMN36717519-rid18892863.guided.33, whole genome shotgun sequence	86..523	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNILC010000005.1	194417..195286	99.195	870	0						
GCA_032347115.1_PDT001829911.1_genomic.fna	Salmonella_enterica	0.5216	396.359 KB	4	aroC_347,dnaN_394,hemD_78,hisD_496,purE_426,sucA_9,thrA_102	1549	8:r:z6	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_347	dnaN	100	100	dnaN_394	hemD	100	100	hemD_78	hisD	100	100	hisD_496	purE	100	100	purE_426	sucA	100	100	sucA_9	thrA	100	100	thrA_102	8	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Altona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNILD010000001.1 Salmonella enterica strain MPSPSA2192-1 SAMN36717518-rid18892853.denovo.01, whole genome shotgun sequence	1073739..1074176	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNILD010000041.1 Salmonella enterica strain MPSPSA2192-1 SAMN36717518-rid18892853.guided.30, whole genome shotgun sequence	5701..6138	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNILD010000030.1 Salmonella enterica strain MPSPSA2192-1 SAMN36717518-rid18892853.denovo.34, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNILD010000042.1 Salmonella enterica strain MPSPSA2192-1 SAMN36717518-rid18892853.guided.33, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNILD010000030.1 Salmonella enterica strain MPSPSA2192-1 SAMN36717518-rid18892853.denovo.34, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNILD010000042.1 Salmonella enterica strain MPSPSA2192-1 SAMN36717518-rid18892853.guided.33, whole genome shotgun sequence	2044..2174																																																avrA	ABNILD010000003.1	401112..401981	99.195	870	0						
GCA_032347135.1_PDT001829909.1_genomic.fna	Salmonella_enterica	0.5215	404.244 KB	5	aroC_4,dnaN_164,hemD_134,hisD_195,purE_132,sucA_46,thrA_158	544	8:z10:z6	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440I,Col440I	aroC	100	100	aroC_4	dnaN	100	100	dnaN_164	hemD	100	100	hemD_134	hisD	100	100	hisD_195	purE	100	100	purE_132	sucA	100	100	sucA_46	thrA	100	100	thrA_158	8	z10	z6	Salmonella enterica subspecies enterica (subspecies I)	Molade or Wippra	The predicted serotypes share the same general formula: 8:z10:z6 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNILF010000011.1 Salmonella enterica strain W217-13-1 SAMN36717516-rid18892843.denovo.11, whole genome shotgun sequence	148954..149391	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNILF010000028.1 Salmonella enterica strain W217-13-1 SAMN36717516-rid18892843.guided.15, whole genome shotgun sequence	16028..16465	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNILF010000004.1 Salmonella enterica strain W217-13-1 SAMN36717516-rid18892843.denovo.04, whole genome shotgun sequence	395860..396282	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNILF010000030.1 Salmonella enterica strain W217-13-1 SAMN36717516-rid18892843.guided.19, whole genome shotgun sequence	18631..19053	Fosfomycin	LAPJ01000014	qnrB19	100	645/645	ABNILF010000020.1 Salmonella enterica strain W217-13-1 SAMN36717516-rid18892843.denovo.24, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNILF010000032.1 Salmonella enterica strain W217-13-1 SAMN36717516-rid18892843.guided.25, whole genome shotgun sequence	606..1250	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNILF010000018.1 Salmonella enterica strain W217-13-1 SAMN36717516-rid18892843.denovo.22, whole genome shotgun sequence	3785..3915	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNILF010000020.1 Salmonella enterica strain W217-13-1 SAMN36717516-rid18892843.denovo.24, whole genome shotgun sequence	1522..1652		enterobacteriales	Col440I	90.27	113 / 114	ABNILF010000019.1 Salmonella enterica strain W217-13-1 SAMN36717516-rid18892843.denovo.23, whole genome shotgun sequence	3345..3457		enterobacteriales	Col440I	90.2	102 / 114	ABNILF010000032.1 Salmonella enterica strain W217-13-1 SAMN36717516-rid18892843.guided.25, whole genome shotgun sequence	1..102																																		avrA	ABNILF010000002.1	140422..141291	99.195	870	0						
GCA_032347155.1_PDT001829908.1_genomic.fna	Salmonella_enterica	0.522	728.667 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pHCM2)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNILG010000001.1 Salmonella enterica strain W222-6-1 SAMN36717521-rid18892833.denovo.01, whole genome shotgun sequence	645017..645454	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNILG010000018.1 Salmonella enterica strain W222-6-1 SAMN36717521-rid18892833.guided.14, whole genome shotgun sequence	9830..10267	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	99.31	875 / 875	ABNILG010000007.1 Salmonella enterica strain W222-6-1 SAMN36717521-rid18892833.denovo.07, whole genome shotgun sequence	82686..83560																																																						avrA	ABNILG010000004.1	560788..561658	99.656	871	0						
GCA_032347175.1_PDT001829910.1_genomic.fna	Salmonella_enterica	0.5222	496.506 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNILE010000001.1 Salmonella enterica strain MPSPSA2191-4 SAMN36717512-rid18892363.denovo.01, whole genome shotgun sequence	790293..790730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNILE010000032.1 Salmonella enterica strain MPSPSA2191-4 SAMN36717512-rid18892363.guided.18, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNILE010000002.1	28833..29702	98.966	870	0						
GCA_032347195.1_PDT001829907.1_genomic.fna	Salmonella_enterica	0.5222	219.319 KB	8	aroC_13,dnaN_11,hemD_25,hisD_197,purE_12,sucA_71,thrA_4	548	21:b:e,n,x	7	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,qnrB19,qnrB19,sul1,sul2,sul1,sul2,sul2,tet(A),tet(A),tet(A),dfrA21,dfrA21	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_197	purE	100	100	purE_12	sucA	100	100	sucA_71	thrA	100	100	thrA_4	21	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Minnesota		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNILH010000002.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.denovo.02, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNILH010000052.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.guided.31, whole genome shotgun sequence	13018..13455	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNILH010000026.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.denovo.26, whole genome shotgun sequence	42078..43223	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNILH010000053.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.guided.34, whole genome shotgun sequence	4270..5415	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	qnrB19	100	645/645	ABNILH010000040.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.denovo.48, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNILH010000059.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.guided.47, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul1	100	840/840	ABNILH010000016.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.denovo.16, whole genome shotgun sequence	59878..60717	Sulfamethoxazole	U12338	sul2	100	816/816	ABNILH010000033.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.denovo.35, whole genome shotgun sequence	7574..8389	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNILH010000055.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.guided.40, whole genome shotgun sequence	4000..4839	Sulfamethoxazole	U12338	sul2	99.88	816/816	ABNILH010000056.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.guided.41, whole genome shotgun sequence	685..1500	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNILH010000057.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.guided.42, whole genome shotgun sequence	685..1500	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNILH010000033.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.denovo.35, whole genome shotgun sequence	10566..11765	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNILH010000056.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.guided.41, whole genome shotgun sequence	3677..4876	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNILH010000057.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.guided.42, whole genome shotgun sequence	3677..4876	Doxycycline, Tetracycline	AJ517790	dfrA21	100	498/498	ABNILH010000016.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.denovo.16, whole genome shotgun sequence	58853..59350	Trimethoprim	AY552589	dfrA21	100	498/498	ABNILH010000055.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.guided.40, whole genome shotgun sequence	2975..3472	Trimethoprim	AY552589																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNILH010000040.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.denovo.48, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNILH010000059.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.guided.47, whole genome shotgun sequence	2334..2464		enterobacteriales	IncC	100	417 / 417	ABNILH010000029.1 Salmonella enterica strain W221-19-1 SAMN36717514-rid18892353.denovo.29, whole genome shotgun sequence	38349..38765																																									avrA	ABNILH010000001.1	503991..504860	99.31	870	0						
GCA_032347215.1_PDT001829897.1_genomic.fna	Salmonella_enterica	0.5214	99.781 KB	17	aroC_182,dnaN_73,hemD_10,hisD_196,purE_163,sucA_173,thrA_159	3335	-:z29:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_182	dnaN	100	100	dnaN_73	hemD	100	100	hemD_10	hisD	100	100	hisD_196	purE	100	100	purE_163	sucA	100	100	sucA_173	thrA	100	100	thrA_159	-	z29	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z29:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNILI010000005.1 Salmonella enterica subsp. enterica serovar Widemarsh strain FSIS12323799 SAMN36717445-rid18892313.denovo.005, whole genome shotgun sequence	13062..13499	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNILI010000101.1 Salmonella enterica subsp. enterica serovar Widemarsh strain FSIS12323799 SAMN36717445-rid18892313.guided.052, whole genome shotgun sequence	14275..14712	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNILI010000003.1	120128..120997	99.195	870	0						
GCA_032347235.1_PDT001829895.1_genomic.fna	Salmonella_enterica	0.5211	349.272 KB	6	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNILK010000001.1 Salmonella enterica strain MPSPSA2185-3 SAMN36717407-rid18892303.denovo.01, whole genome shotgun sequence	133976..134413	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNILK010000026.1 Salmonella enterica strain MPSPSA2185-3 SAMN36717407-rid18892303.denovo.29, whole genome shotgun sequence	6775..7611	Streptomycin	M28829	aph(3'')-Ib	100	780/804	ABNILK010000026.1 Salmonella enterica strain MPSPSA2185-3 SAMN36717407-rid18892303.denovo.29, whole genome shotgun sequence	7611..8390	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNILK010000042.1 Salmonella enterica strain MPSPSA2185-3 SAMN36717407-rid18892303.guided.28, whole genome shotgun sequence	6219..7055	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNILK010000042.1 Salmonella enterica strain MPSPSA2185-3 SAMN36717407-rid18892303.guided.28, whole genome shotgun sequence	5416..6219	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNILK010000043.1 Salmonella enterica strain MPSPSA2185-3 SAMN36717407-rid18892303.guided.31, whole genome shotgun sequence	2397..2834	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNILK010000026.1 Salmonella enterica strain MPSPSA2185-3 SAMN36717407-rid18892303.denovo.29, whole genome shotgun sequence	85..900	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNILK010000042.1 Salmonella enterica strain MPSPSA2185-3 SAMN36717407-rid18892303.guided.28, whole genome shotgun sequence	4540..5355	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNILK010000026.1 Salmonella enterica strain MPSPSA2185-3 SAMN36717407-rid18892303.denovo.29, whole genome shotgun sequence	4240..5514	Doxycycline, Tetracycline	AF534183	tet(A)	100	1172/1200	ABNILK010000042.1 Salmonella enterica strain MPSPSA2185-3 SAMN36717407-rid18892303.guided.28, whole genome shotgun sequence	1..1172	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNILK010000026.1 Salmonella enterica strain MPSPSA2185-3 SAMN36717407-rid18892303.denovo.29, whole genome shotgun sequence	1427..1557	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNILK010000042.1 Salmonella enterica strain MPSPSA2185-3 SAMN36717407-rid18892303.guided.28, whole genome shotgun sequence	3883..4013																																																											
GCA_032347255.1_PDT001829896.1_genomic.fna	Salmonella_enterica	0.522	56.273 KB	28	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	10	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNILJ010000019.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.denovo.019, whole genome shotgun sequence	12422..12859	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNILJ010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.denovo.077, whole genome shotgun sequence	18454..19245	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNILJ010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.denovo.077, whole genome shotgun sequence	18454..19245	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNILJ010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.denovo.136, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNILJ010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.denovo.136, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNILJ010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.denovo.177, whole genome shotgun sequence	93..908	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	X62115	aac(6')-Iaa	97.49	438/438	ABNILJ010000186.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.guided.072, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNILJ010000189.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.guided.113, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNILJ010000189.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.guided.113, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNILJ010000191.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.guided.138, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNILJ010000191.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.guided.138, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNILJ010000195.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.guided.175, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	X62115	blaCTX-M-65	100	876/876	ABNILJ010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.denovo.142, whole genome shotgun sequence	1095..1970	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNILJ010000193.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.guided.143, whole genome shotgun sequence	928..1803	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNILJ010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.denovo.134, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNILJ010000192.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.guided.139, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNILJ010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.denovo.077, whole genome shotgun sequence	17110..17949	Sulfamethoxazole	U12338	sul1	100	840/840	ABNILJ010000189.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.guided.113, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNILJ010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.denovo.077, whole genome shotgun sequence	3394..4593	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNILJ010000188.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.guided.107, whole genome shotgun sequence	6414..7613	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNILJ010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.denovo.128, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNILJ010000194.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.guided.151, whole genome shotgun sequence	1031..1504	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNILJ010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.denovo.095, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX1	98.93	374 / 374	ABNILJ010000176.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323800 SAMN36717444-rid18892763.denovo.187, whole genome shotgun sequence	226..599																																																avrA	ABNILJ010000040.1	39430..40299	99.655	870	0						
GCA_032347275.1_PDT001829894.1_genomic.fna	Salmonella_enterica	0.5218	306.36 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	5	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,floR,floR,qnrS1,qnrS1,tet(A),tet(A)	1	parC_p.T57S	2	IncFIC(FII),IncR,IncR	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNILL010000011.1 Salmonella enterica strain W210-12-1 SAMN36717400-rid18892753.denovo.11, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNILL010000043.1 Salmonella enterica strain W210-12-1 SAMN36717400-rid18892753.guided.30, whole genome shotgun sequence	9819..10256	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNILL010000023.1 Salmonella enterica strain W210-12-1 SAMN36717400-rid18892753.denovo.23, whole genome shotgun sequence	31912..32772	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNILL010000041.1 Salmonella enterica strain W210-12-1 SAMN36717400-rid18892753.guided.27, whole genome shotgun sequence	1608..2468	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNILL010000022.1 Salmonella enterica strain W210-12-1 SAMN36717400-rid18892753.denovo.22, whole genome shotgun sequence	33932..35145	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNILL010000044.1 Salmonella enterica strain W210-12-1 SAMN36717400-rid18892753.guided.35, whole genome shotgun sequence	2073..3286	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNILL010000023.1 Salmonella enterica strain W210-12-1 SAMN36717400-rid18892753.denovo.23, whole genome shotgun sequence	612..1268	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNILL010000045.1 Salmonella enterica strain W210-12-1 SAMN36717400-rid18892753.guided.38, whole genome shotgun sequence	400..1056	Ciprofloxacin	AB187515	tet(A)	100	1275/1275	ABNILL010000022.1 Salmonella enterica strain W210-12-1 SAMN36717400-rid18892753.denovo.22, whole genome shotgun sequence	35746..37020	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNILL010000044.1 Salmonella enterica strain W210-12-1 SAMN36717400-rid18892753.guided.35, whole genome shotgun sequence	3887..5161	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIC(FII)	94.19	499 / 499	ABNILL010000022.1 Salmonella enterica strain W210-12-1 SAMN36717400-rid18892753.denovo.22, whole genome shotgun sequence	29298..29794	enterobacteriales	IncR	100	251 / 251	ABNILL010000023.1 Salmonella enterica strain W210-12-1 SAMN36717400-rid18892753.denovo.23, whole genome shotgun sequence	10758..11008		enterobacteriales	IncR	100	251 / 251	ABNILL010000041.1 Salmonella enterica strain W210-12-1 SAMN36717400-rid18892753.guided.27, whole genome shotgun sequence	23372..23622																																									avrA	ABNILL010000009.1	131970..132839	98.966	870	0						
GCA_032347295.1_PDT001829893.1_genomic.fna	Salmonella_enterica	0.5186	85.777 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	5	IncFIA(HI1),IncFII(pSE11),IncHI1A,IncHI1B(R27),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNILM010000014.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323794 SAMN36717409-rid18892743.denovo.014, whole genome shotgun sequence	84702..85139	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNILM010000139.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323794 SAMN36717409-rid18892743.guided.056, whole genome shotgun sequence	15059..15496	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNILM010000103.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323794 SAMN36717409-rid18892743.denovo.107, whole genome shotgun sequence	2342..3547	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNILM010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323794 SAMN36717409-rid18892743.guided.106, whole genome shotgun sequence	2373..3578	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIA(HI1)	100	388 / 388	ABNILM010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323794 SAMN36717409-rid18892743.denovo.072, whole genome shotgun sequence	855..1242	enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNILM010000075.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323794 SAMN36717409-rid18892743.denovo.077, whole genome shotgun sequence	4655..4914		enterobacteriales	IncHI1A	100	420 / 420	ABNILM010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323794 SAMN36717409-rid18892743.denovo.076, whole genome shotgun sequence	2987..3406		enterobacteriales	IncHI1B(R27)	100	540 / 540	ABNILM010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323794 SAMN36717409-rid18892743.denovo.047, whole genome shotgun sequence	23682..24221	R27	enterobacteriales	IncX1	100	373 / 373	ABNILM010000114.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323794 SAMN36717409-rid18892743.denovo.118, whole genome shotgun sequence	1118..1490																											avrA	ABNILM010000011.1	110001..110870	99.655	870	0						
GCA_032347315.1_PDT001829891.1_genomic.fna	Salmonella_enterica	0.5216	306.36 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	5	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,floR,floR,qnrS1,qnrS1,tet(A),tet(A)	1	parC_p.T57S	2	IncFIC(FII),IncR,IncR	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNILP010000010.1 Salmonella enterica strain W210-17-1 SAMN36717403-rid18892733.denovo.10, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNILP010000042.1 Salmonella enterica strain W210-17-1 SAMN36717403-rid18892733.guided.27, whole genome shotgun sequence	8041..8478	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNILP010000023.1 Salmonella enterica strain W210-17-1 SAMN36717403-rid18892733.denovo.24, whole genome shotgun sequence	31914..32774	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNILP010000043.1 Salmonella enterica strain W210-17-1 SAMN36717403-rid18892733.guided.28, whole genome shotgun sequence	1608..2468	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNILP010000022.1 Salmonella enterica strain W210-17-1 SAMN36717403-rid18892733.denovo.23, whole genome shotgun sequence	33932..35145	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNILP010000045.1 Salmonella enterica strain W210-17-1 SAMN36717403-rid18892733.guided.34, whole genome shotgun sequence	1593..2806	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNILP010000023.1 Salmonella enterica strain W210-17-1 SAMN36717403-rid18892733.denovo.24, whole genome shotgun sequence	614..1270	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNILP010000046.1 Salmonella enterica strain W210-17-1 SAMN36717403-rid18892733.guided.39, whole genome shotgun sequence	400..1056	Ciprofloxacin	AB187515	tet(A)	100	1275/1275	ABNILP010000022.1 Salmonella enterica strain W210-17-1 SAMN36717403-rid18892733.denovo.23, whole genome shotgun sequence	35746..37020	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNILP010000045.1 Salmonella enterica strain W210-17-1 SAMN36717403-rid18892733.guided.34, whole genome shotgun sequence	3407..4681	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIC(FII)	94.19	499 / 499	ABNILP010000022.1 Salmonella enterica strain W210-17-1 SAMN36717403-rid18892733.denovo.23, whole genome shotgun sequence	29298..29794	enterobacteriales	IncR	100	251 / 251	ABNILP010000023.1 Salmonella enterica strain W210-17-1 SAMN36717403-rid18892733.denovo.24, whole genome shotgun sequence	10760..11010		enterobacteriales	IncR	100	251 / 251	ABNILP010000043.1 Salmonella enterica strain W210-17-1 SAMN36717403-rid18892733.guided.28, whole genome shotgun sequence	23372..23622																																									avrA	ABNILP010000009.1	131929..132798	98.966	870	0						
GCA_032347335.1_PDT001829892.1_genomic.fna	Salmonella_enterica	0.5225	60.406 KB	24	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNILN010000008.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323795 SAMN36717411-rid18892293.denovo.008, whole genome shotgun sequence	17726..18163	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNILN010000163.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323795 SAMN36717411-rid18892293.guided.076, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.92	557 / 643	ABNILN010000137.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323795 SAMN36717411-rid18892293.denovo.140, whole genome shotgun sequence	1253..1809	enterobacteriales	IncFII(S)	100	262 / 262	ABNILN010000110.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323795 SAMN36717411-rid18892293.denovo.113, whole genome shotgun sequence	4776..5037																																																avrA	ABNILN010000056.1	24898..25767	99.54	870	0						
GCA_032347355.1_PDT001829890.1_genomic.fna	Salmonella_enterica	0.5222	517.378 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_547	2370	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_547	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNILO010000003.1 Salmonella enterica strain W209-28-1 SAMN36717413-rid18892283.denovo.03, whole genome shotgun sequence	476550..476987	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNILO010000026.1 Salmonella enterica strain W209-28-1 SAMN36717413-rid18892283.guided.18, whole genome shotgun sequence	4680..5117	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNILO010000002.1	534651..535520	99.195	870	0						
GCA_032347375.1_PDT001829885.1_genomic.fna	Salmonella_enterica	0.52	263.533 KB	7	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,floR,floR,OqxB,OqxA,qnrB19,OqxB,OqxA,qnrB19,sul2,sul2,tet(A),tet(A),bleO,bleO	1	parC_p.T57S	4	Col(pHAD28),Col440I,Col440I,IncHI2,IncHI2A	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNILR010000012.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.denovo.12, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNILR010000040.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.denovo.44, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNILR010000040.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.denovo.44, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.03	438/438	ABNILR010000055.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.guided.30, whole genome shotgun sequence	10107..10544	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNILR010000060.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.guided.49, whole genome shotgun sequence	1873..2709	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNILR010000060.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.guided.49, whole genome shotgun sequence	1070..1873	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNILR010000044.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.denovo.51, whole genome shotgun sequence	533..1393	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNILR010000062.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.guided.53, whole genome shotgun sequence	1032..1892	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNILR010000032.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.denovo.34, whole genome shotgun sequence	6164..7377	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNILR010000058.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.guided.45, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	OqxB	100	3153/3153	ABNILR010000036.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.denovo.40, whole genome shotgun sequence	597..3749	Chloramphenicol, Nalidixic acid, Ciprofloxacin, Trimethoprim	EU370913	OqxA	100	1176/1176	ABNILR010000036.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.denovo.40, whole genome shotgun sequence	3773..4948	Chloramphenicol, Nalidixic acid, Ciprofloxacin, Trimethoprim	EU370913	qnrB19	100	645/645	ABNILR010000043.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.denovo.50, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	OqxB	100	3153/3153	ABNILR010000057.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.guided.39, whole genome shotgun sequence	1495..4647	Chloramphenicol, Nalidixic acid, Ciprofloxacin, Trimethoprim	EU370913	OqxA	100	1176/1176	ABNILR010000057.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.guided.39, whole genome shotgun sequence	296..1471	Chloramphenicol, Nalidixic acid, Ciprofloxacin, Trimethoprim	EU370913	qnrB19	100	645/645	ABNILR010000061.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.guided.52, whole genome shotgun sequence	620..1264	Ciprofloxacin	EU432277	sul2	100	816/816	ABNILR010000040.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.denovo.44, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNILR010000060.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.guided.49, whole genome shotgun sequence	194..1009	Sulfamethoxazole	HQ840942	tet(A)	100	1275/1275	ABNILR010000032.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.denovo.34, whole genome shotgun sequence	4289..5563	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNILR010000059.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.guided.48, whole genome shotgun sequence	1528..2802	Doxycycline, Tetracycline	AF534183	bleO	100	392/399	ABNILR010000046.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.denovo.56, whole genome shotgun sequence	135..526	Bleomycin	AF051917	bleO	100	392/399	ABNILR010000063.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.guided.54, whole genome shotgun sequence	175..566	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNILR010000043.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.denovo.50, whole genome shotgun sequence	1150..1280	enterobacteriales	Col440I	94.59	111 / 114	ABNILR010000038.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.denovo.42, whole genome shotgun sequence	3987..4097		enterobacteriales	Col440I	91.23	114 / 114	ABNILR010000061.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.guided.52, whole genome shotgun sequence	3..116		enterobacteriales	IncHI2	100	327 / 327	ABNILR010000022.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.denovo.22, whole genome shotgun sequence	5691..6017		enterobacteriales	IncHI2A	99.52	630 / 630	ABNILR010000022.1 Salmonella enterica strain MPSPSA2186-2 SAMN36717406-rid18892263.denovo.22, whole genome shotgun sequence	23444..24073																											avrA	ABNILR010000001.1	39467..40336	98.966	870	0						
GCA_032347395.1_PDT001829887.1_genomic.fna	Salmonella_enterica	0.5221	702.435 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNILQ010000001.1 Salmonella enterica strain W209-14-1 SAMN36717412-rid18892273.denovo.01, whole genome shotgun sequence	645093..645530	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNILQ010000023.1 Salmonella enterica strain W209-14-1 SAMN36717412-rid18892273.guided.14, whole genome shotgun sequence	9809..10246	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNILQ010000013.1 Salmonella enterica strain W209-14-1 SAMN36717412-rid18892273.denovo.17, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNILQ010000024.1 Salmonella enterica strain W209-14-1 SAMN36717412-rid18892273.guided.16, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNILQ010000013.1 Salmonella enterica strain W209-14-1 SAMN36717412-rid18892273.denovo.17, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNILQ010000024.1 Salmonella enterica strain W209-14-1 SAMN36717412-rid18892273.guided.16, whole genome shotgun sequence	2334..2464																																																avrA	ABNILQ010000002.1	561516..562386	99.656	871	0						
GCA_032347415.1_PDT001829883.1_genomic.fna	Salmonella_enterica	0.5205	251.526 KB	7	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pKPC-CAV1321	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNILU010000013.1 Salmonella enterica strain W217-21-1 SAMN36717408-rid18892683.denovo.013, whole genome shotgun sequence	70815..71252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNILU010000137.1 Salmonella enterica strain W217-21-1 SAMN36717408-rid18892683.guided.029, whole genome shotgun sequence	8643..9080	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1321	94.61	594 / 596	ABNILU010000039.1 Salmonella enterica strain W217-21-1 SAMN36717408-rid18892683.denovo.042, whole genome shotgun sequence	5285..5878																																																						avrA	ABNILU010000001.1	120482..121351	98.851	870	0						
GCA_032347435.1_PDT001829884.1_genomic.fna	Salmonella_enterica	0.5221	141.4 KB	11	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNILS010000001.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323797 SAMN36717405-rid18892693.denovo.01, whole genome shotgun sequence	488126..488563	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNILS010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323797 SAMN36717405-rid18892693.denovo.51, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNILS010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323797 SAMN36717405-rid18892693.denovo.51, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNILS010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323797 SAMN36717405-rid18892693.denovo.51, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNILS010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323797 SAMN36717405-rid18892693.denovo.51, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNILS010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323797 SAMN36717405-rid18892693.denovo.51, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNILS010000061.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323797 SAMN36717405-rid18892693.guided.34, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNILS010000064.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323797 SAMN36717405-rid18892693.guided.50, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNILS010000064.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323797 SAMN36717405-rid18892693.guided.50, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNILS010000064.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323797 SAMN36717405-rid18892693.guided.50, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNILS010000064.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323797 SAMN36717405-rid18892693.guided.50, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNILS010000064.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323797 SAMN36717405-rid18892693.guided.50, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNILS010000048.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323797 SAMN36717405-rid18892693.denovo.53, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNILS010000065.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323797 SAMN36717405-rid18892693.guided.52, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	ABNILS010000046.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323797 SAMN36717405-rid18892693.denovo.49, whole genome shotgun sequence	792..945																																																						avrA	ABNILS010000015.1	39785..40654	99.655	870	0						
GCA_032347455.1_PDT001829882.1_genomic.fna	Salmonella_enterica	0.5205	226.94 KB	8	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pKPC-CAV1321	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNILT010000013.1 Salmonella enterica strain W212-11-1 SAMN36717404-rid18892253.denovo.013, whole genome shotgun sequence	70815..71252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNILT010000132.1 Salmonella enterica strain W212-11-1 SAMN36717404-rid18892253.guided.032, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1321	94.61	594 / 596	ABNILT010000060.1 Salmonella enterica strain W212-11-1 SAMN36717404-rid18892253.denovo.063, whole genome shotgun sequence	779..1372																																																						avrA	ABNILT010000001.1	120482..121351	98.851	870	0						
GCA_032347465.1_PDT001829881.1_genomic.fna	Salmonella_enterica	0.5192	84.082 KB	20	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	15	aac(6')-Iaa,aadA1,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Ic,aph(3')-IIa,aph(4)-Ia,aac(3)-IV,aadA1,aac(6')-Iaa,aph(3')-Ia,aph(4)-Ia,aac(3)-IV,aph(6)-Ic,aph(3')-IIa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaCMY-2,blaCMY-2,fosA7,fosA7,floR,floR,sul2,sul2,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	4	ColRNAI,ColRNAI,IncC,IncHI2,IncHI2A	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNILV010000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.002, whole genome shotgun sequence	102079..102516	Amikacin, Tobramycin	NC_003197	aadA1	100	789/789	ABNILV010000040.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.040, whole genome shotgun sequence	2027..2815	Spectinomycin, Streptomycin	JQ480156	aph(3')-Ia	100	816/816	ABNILV010000096.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.101, whole genome shotgun sequence	1930..2745	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(6)-Id	100	837/837	ABNILV010000099.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.104, whole genome shotgun sequence	2557..3393	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNILV010000099.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.104, whole genome shotgun sequence	3393..4195	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNILV010000099.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.104, whole genome shotgun sequence	3393..4196	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNILV010000099.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.104, whole genome shotgun sequence	3393..4196	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNILV010000099.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.104, whole genome shotgun sequence	3393..4196	Streptomycin	AF321550	aph(6)-Ic	100	801/801	ABNILV010000109.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.116, whole genome shotgun sequence	2053..2853	Streptomycin	X01702	aph(3')-IIa	100	795/795	ABNILV010000109.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.116, whole genome shotgun sequence	819..1613	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	aph(4)-Ia	100	1026/1026	ABNILV010000110.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.117, whole genome shotgun sequence	1147..2172	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNILV010000110.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.117, whole genome shotgun sequence	142..918	Gentamicin, Tobramycin	DQ241380	aadA1	100	789/789	ABNILV010000137.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.041, whole genome shotgun sequence	2068..2856	Spectinomycin, Streptomycin	JQ480156	aac(6')-Iaa	97.26	438/438	ABNILV010000140.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.088, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNILV010000143.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.114, whole genome shotgun sequence	1259..2074	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(4)-Ia	100	1026/1026	ABNILV010000144.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.118, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNILV010000144.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.118, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(6)-Ic	100	801/801	ABNILV010000145.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.119, whole genome shotgun sequence	1291..2091	Streptomycin	X01702	aph(3')-IIa	100	795/795	ABNILV010000145.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.119, whole genome shotgun sequence	57..851	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	aph(6)-Id	100	837/837	ABNILV010000149.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.125, whole genome shotgun sequence	836..1672	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNILV010000149.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.125, whole genome shotgun sequence	33..836	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNILV010000150.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.126, whole genome shotgun sequence	836..1672	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNILV010000150.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.126, whole genome shotgun sequence	34..836	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNILV010000150.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.126, whole genome shotgun sequence	33..836	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNILV010000150.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.126, whole genome shotgun sequence	33..836	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNILV010000150.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.126, whole genome shotgun sequence	33..836	Streptomycin	AF321550	blaCMY-2	100	1146/1146	ABNILV010000066.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.068, whole genome shotgun sequence	20216..21361	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNILV010000139.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.070, whole genome shotgun sequence	645..1790	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	fosA7	100	423/423	ABNILV010000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.003, whole genome shotgun sequence	139772..140194	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNILV010000138.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.043, whole genome shotgun sequence	36813..37235	Fosfomycin	LAPJ01000014	floR	98.01	1007/1215	ABNILV010000103.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.108, whole genome shotgun sequence	3278..4284	Chloramphenicol, Florfenicol	AF118107	floR	98.35	1214/1215	ABNILV010000142.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.111, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNILV010000057.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.059, whole genome shotgun sequence	26694..27509	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNILV010000147.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.123, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1240/1275	ABNILV010000112.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.122, whole genome shotgun sequence	1218..2457	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNILV010000146.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.121, whole genome shotgun sequence	1259..2533	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNILV010000040.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.040, whole genome shotgun sequence	877..1350	Trimethoprim	X00926	dfrA1	100	474/474	ABNILV010000137.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.041, whole genome shotgun sequence	918..1391	Trimethoprim	X00926																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNILV010000096.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.101, whole genome shotgun sequence	810..940	enterobacteriales	ColRNAI	90.08	131 / 130	ABNILV010000143.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.guided.114, whole genome shotgun sequence	3064..3194		enterobacteriales	IncC	100	417 / 417	ABNILV010000062.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.064, whole genome shotgun sequence	17491..17907		enterobacteriales	IncHI2	100	327 / 327	ABNILV010000104.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.109, whole genome shotgun sequence	60..386		enterobacteriales	IncHI2A	99.52	630 / 630	ABNILV010000095.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS12323792 SAMN36717396-rid18892673.denovo.100, whole genome shotgun sequence	2796..3425																											avrA	ABNILV010000012.1	79337..80206	99.54	870	0						
GCA_032347495.1_PDT001829879.1_genomic.fna	Salmonella_enterica	0.5227	132.561 KB	11	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNILX010000001.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323791 SAMN36717395-rid18892663.denovo.01, whole genome shotgun sequence	252456..252893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNILX010000051.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323791 SAMN36717395-rid18892663.denovo.54, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNILX010000051.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323791 SAMN36717395-rid18892663.denovo.54, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNILX010000051.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323791 SAMN36717395-rid18892663.denovo.54, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNILX010000051.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323791 SAMN36717395-rid18892663.denovo.54, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNILX010000051.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323791 SAMN36717395-rid18892663.denovo.54, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNILX010000067.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323791 SAMN36717395-rid18892663.guided.51, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNILX010000068.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323791 SAMN36717395-rid18892663.guided.56, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNILX010000068.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323791 SAMN36717395-rid18892663.guided.56, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNILX010000068.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323791 SAMN36717395-rid18892663.guided.56, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNILX010000068.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323791 SAMN36717395-rid18892663.guided.56, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNILX010000068.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323791 SAMN36717395-rid18892663.guided.56, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNILX010000054.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323791 SAMN36717395-rid18892663.denovo.59, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNILX010000069.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323791 SAMN36717395-rid18892663.guided.58, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNILX010000004.1	139890..140759	99.655	870	0						
GCA_032347515.1_PDT001829880.1_genomic.fna	Salmonella_enterica	0.5217	95.694 KB	17	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pHCM2),IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNILW010000030.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323789 SAMN36717392-rid18892243.denovo.030, whole genome shotgun sequence	52281..52718	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNILW010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323789 SAMN36717392-rid18892243.denovo.060, whole genome shotgun sequence	18452..19243	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNILW010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323789 SAMN36717392-rid18892243.denovo.060, whole genome shotgun sequence	18452..19243	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNILW010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323789 SAMN36717392-rid18892243.guided.057, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNILW010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323789 SAMN36717392-rid18892243.guided.080, whole genome shotgun sequence	167..958	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNILW010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323789 SAMN36717392-rid18892243.guided.080, whole genome shotgun sequence	167..958	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNILW010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323789 SAMN36717392-rid18892243.denovo.060, whole genome shotgun sequence	17108..17947	Sulfamethoxazole	U12338	sul1	100	840/840	ABNILW010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323789 SAMN36717392-rid18892243.guided.080, whole genome shotgun sequence	1463..2302	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNILW010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323789 SAMN36717392-rid18892243.denovo.060, whole genome shotgun sequence	3392..4591	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNILW010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323789 SAMN36717392-rid18892243.guided.076, whole genome shotgun sequence	4983..6182	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pHCM2)	98.51	875 / 875	ABNILW010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323789 SAMN36717392-rid18892243.denovo.015, whole genome shotgun sequence	64606..65480	enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNILW010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323789 SAMN36717392-rid18892243.denovo.038, whole genome shotgun sequence	36931..37490																																																avrA	ABNILW010000022.1	81701..82570	99.655	870	0						
GCA_032347535.1_PDT001829878.1_genomic.fna	Salmonella_enterica	0.5226	84.579 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNILY010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323790 SAMN36717394-rid18892233.denovo.002, whole genome shotgun sequence	56387..56824	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNILY010000117.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323790 SAMN36717394-rid18892233.guided.069, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNILY010000029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323790 SAMN36717394-rid18892233.denovo.029, whole genome shotgun sequence	44716..45358	enterobacteriales	IncFII(S)	100	262 / 262	ABNILY010000029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323790 SAMN36717394-rid18892233.denovo.029, whole genome shotgun sequence	29370..29631																																																avrA	ABNILY010000007.1	106603..107471	100	869	0						
GCA_032347615.1_PDT001829870.1_genomic.fna	Salmonella_enterica	0.5214	148.675 KB	9	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIMF010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323785 SAMN36717296-rid18892183.denovo.01, whole genome shotgun sequence	377093..377530	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNIMF010000070.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323785 SAMN36717296-rid18892183.guided.52, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNIMF010000032.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323785 SAMN36717296-rid18892183.denovo.32, whole genome shotgun sequence	27650..27791																																																						avrA	ABNIMF010000008.1	149695..150564	99.54	870	0						
GCA_032347635.1_PDT001829873.1_genomic.fna	Salmonella_enterica	0.5215	57.13 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIMC010000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323788 SAMN36717298-rid18892203.denovo.022, whole genome shotgun sequence	14142..14579	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIMC010000166.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323788 SAMN36717298-rid18892203.guided.073, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNIMC010000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323788 SAMN36717298-rid18892203.denovo.015, whole genome shotgun sequence	45501..46316	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIMC010000164.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323788 SAMN36717298-rid18892203.guided.031, whole genome shotgun sequence	45532..46347	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNIMC010000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323788 SAMN36717298-rid18892203.denovo.015, whole genome shotgun sequence	48493..49692	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNIMC010000164.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323788 SAMN36717298-rid18892203.guided.031, whole genome shotgun sequence	48524..49723	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	ColpVC	98.96	193 / 193	ABNIMC010000136.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323788 SAMN36717298-rid18892203.denovo.140, whole genome shotgun sequence	805..997																																																						avrA	ABNIMC010000004.1	43760..44629	99.885	870	0						
GCA_032347655.1_PDT001829872.1_genomic.fna	Salmonella_enterica	0.5214	504.405 KB	3	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	7	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,qnrB19,qnrB19,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	3	Col(BS512),Col(pHAD28),Col(pHAD28),IncR	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIMB010000001.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.denovo.01, whole genome shotgun sequence	911995..912432	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIMB010000031.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.guided.17, whole genome shotgun sequence	3704..4141	Amikacin, Tobramycin	NC_003197	mph(A)	100	906/906	ABNIMB010000015.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.denovo.16, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	ABNIMB010000032.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.guided.19, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNIMB010000015.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.denovo.16, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIMB010000034.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.guided.25, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNIMB010000021.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.denovo.27, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIMB010000035.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.guided.26, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul1	100	840/840	ABNIMB010000015.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.denovo.16, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNIMB010000032.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.guided.19, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNIMB010000015.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.denovo.16, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNIMB010000032.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.guided.19, whole genome shotgun sequence	9840..11114	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNIMB010000015.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.denovo.16, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNIMB010000032.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.guided.19, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(BS512)	100	233 / 233	ABNIMB010000022.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.denovo.28, whole genome shotgun sequence	400..632	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIMB010000021.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.denovo.27, whole genome shotgun sequence	1150..1280		enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIMB010000035.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.guided.26, whole genome shotgun sequence	2044..2174		enterobacteriales	IncR	100	251 / 251	ABNIMB010000016.1 Salmonella enterica strain MPSPSA2186-1 SAMN36717297-rid18892193.denovo.18, whole genome shotgun sequence	8402..8652																																		avrA	ABNIMB010000002.1	162805..163674	98.966	870	0						
GCA_032347675.1_PDT001829877.1_genomic.fna	Salmonella_enterica	0.5217	115.877 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNILZ010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323793 SAMN36717397-rid18892223.denovo.001, whole genome shotgun sequence	50920..51357	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNILZ010000101.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323793 SAMN36717397-rid18892223.guided.039, whole genome shotgun sequence	15470..15907	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNILZ010000063.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323793 SAMN36717397-rid18892223.denovo.066, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNILZ010000067.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323793 SAMN36717397-rid18892223.denovo.070, whole genome shotgun sequence	3415..3676																																																avrA	ABNILZ010000003.1	175196..176065	99.54	870	0						
GCA_032347695.1_PDT001829875.1_genomic.fna	Salmonella_enterica	0.5212	386.399 KB	5	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,floR,floR,qnrB19,qnrB19,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),IncC,IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIMA010000001.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.denovo.01, whole genome shotgun sequence	562022..562459	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIMA010000025.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.denovo.27, whole genome shotgun sequence	10080..10916	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIMA010000025.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.denovo.27, whole genome shotgun sequence	9277..10080	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	ABNIMA010000039.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.guided.24, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIMA010000042.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.guided.32, whole genome shotgun sequence	2364..3200	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIMA010000042.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.guided.32, whole genome shotgun sequence	1561..2364	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNIMA010000026.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.denovo.29, whole genome shotgun sequence	4283..5143	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNIMA010000043.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.guided.33, whole genome shotgun sequence	3962..4822	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNIMA010000025.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.denovo.27, whole genome shotgun sequence	14052..15265	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIMA010000044.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.guided.35, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNIMA010000031.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.denovo.38, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIMA010000045.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.guided.37, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABNIMA010000025.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.denovo.27, whole genome shotgun sequence	8401..9216	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIMA010000042.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.guided.32, whole genome shotgun sequence	685..1500	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNIMA010000025.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.denovo.27, whole genome shotgun sequence	12177..13451	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNIMA010000042.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.guided.32, whole genome shotgun sequence	4461..5735	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIMA010000031.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.denovo.38, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIMA010000045.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.guided.37, whole genome shotgun sequence	2044..2174		enterobacteriales	IncC	100	417 / 417	ABNIMA010000020.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.denovo.20, whole genome shotgun sequence	17492..17908		enterobacteriales	IncX4	100	374 / 374	ABNIMA010000023.1 Salmonella enterica strain MPSPSA2190-1 SAMN36717389-rid18892213.denovo.23, whole genome shotgun sequence	1007..1380																																		avrA	ABNIMA010000002.1	93992..94861	99.54	870	0						
GCA_032347955.1_PDT001829837.1_genomic.fna	Salmonella_enterica	0.5216	106.248 KB	13	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIMR010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323784 SAMN36717291-rid18891953.denovo.01, whole genome shotgun sequence	344933..345370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNIMR010000090.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323784 SAMN36717291-rid18891953.guided.45, whole genome shotgun sequence	34785..35222	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNIMR010000064.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323784 SAMN36717291-rid18891953.denovo.67, whole genome shotgun sequence	4702..4843																																																						avrA	ABNIMR010000008.1	43551..44420	99.54	870	0						
GCA_032347975.1_PDT001829835.1_genomic.fna	Salmonella_enterica	0.5218	108.446 KB	15	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIMT010000002.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323782 SAMN36717289-rid18891943.denovo.002, whole genome shotgun sequence	62398..62835	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNIMT010000101.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323782 SAMN36717289-rid18891943.guided.066, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNIMT010000071.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323782 SAMN36717289-rid18891943.denovo.073, whole genome shotgun sequence	11466..11607																																																						avrA	ABNIMT010000015.1	105301..106170	99.54	870	0						
GCA_032347995.1_PDT001829833.1_genomic.fna	Salmonella_enterica	0.5223	290.009 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIMU010000001.1 Salmonella enterica strain MPSPSA2191-2 SAMN36717287-rid18891933.denovo.01, whole genome shotgun sequence	790200..790637	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIMU010000037.1 Salmonella enterica strain MPSPSA2191-2 SAMN36717287-rid18891933.guided.21, whole genome shotgun sequence	19388..19825	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIMU010000002.1	28833..29702	98.966	870	0						
GCA_032348015.1_PDT001829831.1_genomic.fna	Salmonella_enterica	0.521	400.549 KB	5	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,floR,floR,qnrB19,qnrB19,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),IncC,IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIMW010000005.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.denovo.05, whole genome shotgun sequence	223453..223890	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIMW010000018.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.denovo.20, whole genome shotgun sequence	10080..10916	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIMW010000018.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.denovo.20, whole genome shotgun sequence	9277..10080	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	ABNIMW010000032.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.guided.17, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIMW010000034.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.guided.24, whole genome shotgun sequence	2364..3200	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIMW010000034.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.guided.24, whole genome shotgun sequence	1561..2364	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNIMW010000019.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.denovo.22, whole genome shotgun sequence	4283..5143	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNIMW010000035.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.guided.26, whole genome shotgun sequence	3962..4822	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNIMW010000018.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.denovo.20, whole genome shotgun sequence	14052..15265	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIMW010000036.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNIMW010000023.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.denovo.30, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIMW010000037.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.guided.29, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABNIMW010000018.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.denovo.20, whole genome shotgun sequence	8401..9216	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIMW010000034.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.guided.24, whole genome shotgun sequence	685..1500	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNIMW010000018.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.denovo.20, whole genome shotgun sequence	12177..13451	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNIMW010000034.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.guided.24, whole genome shotgun sequence	4461..5735	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIMW010000023.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.denovo.30, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIMW010000037.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.guided.29, whole genome shotgun sequence	2044..2174		enterobacteriales	IncC	100	417 / 417	ABNIMW010000015.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.denovo.15, whole genome shotgun sequence	17492..17908		enterobacteriales	IncX4	100	374 / 374	ABNIMW010000017.1 Salmonella enterica strain MPSPSA2190-2 SAMN36717279-rid18892503.denovo.19, whole genome shotgun sequence	1007..1380																																		avrA	ABNIMW010000003.1	95008..95877	99.54	870	0						
GCA_032348035.1_PDT001829832.1_genomic.fna	Salmonella_enterica	0.5214	121.023 KB	13	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIMV010000043.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323781 SAMN36717286-rid18891923.denovo.43, whole genome shotgun sequence	15464..15901	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNIMV010000084.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323781 SAMN36717286-rid18891923.guided.61, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNIMV010000046.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323781 SAMN36717286-rid18891923.denovo.47, whole genome shotgun sequence	27651..27792																																																						avrA	ABNIMV010000007.1	81662..82531	99.54	870	0						
GCA_032348055.1_PDT001829826.1_genomic.fna	Salmonella_enterica	0.5224	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIMY010000001.1 Salmonella enterica strain MPSPSA2191-1 SAMN36717283-rid18892493.denovo.01, whole genome shotgun sequence	790140..790577	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIMY010000027.1 Salmonella enterica strain MPSPSA2191-1 SAMN36717283-rid18892493.guided.18, whole genome shotgun sequence	14155..14592	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIMY010000002.1	28833..29702	98.966	870	0						
GCA_032348075.1_PDT001829830.1_genomic.fna	Salmonella_enterica	0.5215	98.158 KB	15	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIMX010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323780 SAMN36717284-rid18891913.denovo.01, whole genome shotgun sequence	227265..227702	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNIMX010000094.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323780 SAMN36717284-rid18891913.guided.36, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNIMX010000064.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323780 SAMN36717284-rid18891913.denovo.67, whole genome shotgun sequence	11601..11742																																																						avrA	ABNIMX010000005.1	124219..125088	99.54	870	0						
GCA_032348095.1_PDT001829824.1_genomic.fna	Salmonella_enterica	0.5214	133.428 KB	14	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIMZ010000001.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.denovo.01, whole genome shotgun sequence	175569..176006	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIMZ010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.denovo.44, whole genome shotgun sequence	28572..29408	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIMZ010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.denovo.44, whole genome shotgun sequence	27769..28572	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNIMZ010000079.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.guided.47, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIMZ010000081.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.guided.58, whole genome shotgun sequence	4793..5629	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIMZ010000081.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.guided.58, whole genome shotgun sequence	3990..4793	Streptomycin	AF321551	blaTEM-214	100	824/861	ABNIMZ010000062.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.denovo.66, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNIMZ010000062.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.denovo.66, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNIMZ010000062.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.denovo.66, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNIMZ010000066.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.denovo.72, whole genome shotgun sequence	1405..2550	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNIMZ010000083.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.guided.71, whole genome shotgun sequence	1436..2581	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNIMZ010000084.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.guided.78, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNIMZ010000084.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.guided.78, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNIMZ010000084.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.guided.78, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNIMZ010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.denovo.44, whole genome shotgun sequence	32544..33757	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIMZ010000082.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.guided.67, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNIMZ010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.denovo.44, whole genome shotgun sequence	26893..27708	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIMZ010000081.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.guided.58, whole genome shotgun sequence	3114..3929	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNIMZ010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.denovo.44, whole genome shotgun sequence	30669..31943	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNIMZ010000081.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.guided.58, whole genome shotgun sequence	6890..8164	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncC	100	417 / 417	ABNIMZ010000039.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.denovo.39, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNIMZ010000040.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.denovo.40, whole genome shotgun sequence	16903..17162		enterobacteriales	IncX1	98.66	374 / 374	ABNIMZ010000054.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323568 SAMN36717212-rid18892483.denovo.57, whole genome shotgun sequence	8871..9244																																									avrA	ABNIMZ010000015.1	39484..40352	99.54	870	0						
GCA_032348115.1_PDT001829823.1_genomic.fna	Salmonella_enterica	0.5215	138.742 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNINA010000025.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323559 SAMN36717214-rid18891863.denovo.25, whole genome shotgun sequence	14076..14513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNINA010000064.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323559 SAMN36717214-rid18891863.guided.40, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNINA010000042.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323559 SAMN36717214-rid18891863.denovo.45, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNINA010000049.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323559 SAMN36717214-rid18891863.denovo.52, whole genome shotgun sequence	3397..3658																																																avrA	ABNINA010000003.1	175197..176066	99.54	870	0						
GCA_032348135.1_PDT001829822.1_genomic.fna	Salmonella_enterica	0.5214	172.511 KB	9	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNINB010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323779 SAMN36717213-rid18891853.denovo.01, whole genome shotgun sequence	474195..474632	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNINB010000069.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323779 SAMN36717213-rid18891853.guided.57, whole genome shotgun sequence	4002..4439	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNINB010000043.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323779 SAMN36717213-rid18891853.denovo.44, whole genome shotgun sequence	20616..20757																																																						avrA	ABNINB010000005.1	124130..124999	99.54	870	0						
GCA_032348155.1_PDT001829814.1_genomic.fna	Salmonella_enterica	0.5212	386.154 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	13	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,floR,floR,qnrB19,qnrB19,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),Col440I,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNINC010000010.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.10, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNINC010000014.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.14, whole genome shotgun sequence	67257..68093	Streptomycin	M28829	aph(3'')-Ib	100	529/804	ABNINC010000014.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.14, whole genome shotgun sequence	68936..69464	Streptomycin	AF321551	aph(3'')-Ib	99.2957746478873	284/804	ABNINC010000014.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.14, whole genome shotgun sequence	68093..68374	Streptomycin	AF321551	aac(6')-Iaa	97.03	438/438	ABNINC010000045.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.guided.30, whole genome shotgun sequence	12612..13049	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNINC010000046.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.guided.32, whole genome shotgun sequence	4150..4986	Streptomycin	M28829	aph(3'')-Ib	100	529/804	ABNINC010000046.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.guided.32, whole genome shotgun sequence	5829..6357	Streptomycin	AF321551	aph(3'')-Ib	99.2957746478873	284/804	ABNINC010000046.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.guided.32, whole genome shotgun sequence	4986..5267	Streptomycin	AF321551	blaTEM-220	99.88	861/861	ABNINC010000018.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.18, whole genome shotgun sequence	5461..6321	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNINC010000018.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.18, whole genome shotgun sequence	5461..6321	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNINC010000018.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.18, whole genome shotgun sequence	5461..6321	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNINC010000018.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.18, whole genome shotgun sequence	5461..6321	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNINC010000018.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.18, whole genome shotgun sequence	5461..6321	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	ABNINC010000043.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.guided.25, whole genome shotgun sequence	17307..18167	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNINC010000043.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.guided.25, whole genome shotgun sequence	17307..18167	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNINC010000043.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.guided.25, whole genome shotgun sequence	17307..18167	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNINC010000043.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.guided.25, whole genome shotgun sequence	17307..18167	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNINC010000043.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.guided.25, whole genome shotgun sequence	17307..18167	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNINC010000014.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.14, whole genome shotgun sequence	65087..66300	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNINC010000046.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.guided.32, whole genome shotgun sequence	1980..3193	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNINC010000030.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.35, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNINC010000047.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.guided.37, whole genome shotgun sequence	620..1264	Ciprofloxacin	EU432277	sul2	100	816/816	ABNINC010000014.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.14, whole genome shotgun sequence	69525..70340	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNINC010000046.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.guided.32, whole genome shotgun sequence	6418..7233	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNINC010000018.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.18, whole genome shotgun sequence	7250..8449	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNINC010000043.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.guided.25, whole genome shotgun sequence	19096..20295	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNINC010000014.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.14, whole genome shotgun sequence	68443..68916	Trimethoprim	AF393510	dfrA14	100	474/474	ABNINC010000046.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.guided.32, whole genome shotgun sequence	5336..5809	Trimethoprim	AF393510																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNINC010000029.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.34, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNINC010000030.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.35, whole genome shotgun sequence	1522..1652		enterobacteriales	Col440I	91.23	114 / 114	ABNINC010000047.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.guided.37, whole genome shotgun sequence	3..116		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNINC010000014.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.14, whole genome shotgun sequence	74186..74327		enterobacteriales	IncX1	98.94	377 / 377	ABNINC010000018.1 Salmonella enterica strain W204-18-1 SAMN36717203-rid18892443.denovo.18, whole genome shotgun sequence	16086..16462																											avrA	ABNINC010000002.1	122176..123045	98.966	870	0						
GCA_032348175.1_PDT001829820.1_genomic.fna	Salmonella_enterica	0.5223	52.679 KB	28	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncFII(pEH01)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIND010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.denovo.001, whole genome shotgun sequence	350595..351032	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNIND010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.denovo.082, whole genome shotgun sequence	18463..19254	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIND010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.denovo.082, whole genome shotgun sequence	18463..19254	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNIND010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.denovo.136, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNIND010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.denovo.136, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNIND010000184.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.guided.079, whole genome shotgun sequence	8263..8700	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNIND010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.guided.120, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIND010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.guided.120, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNIND010000190.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.guided.135, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNIND010000190.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.guided.135, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNIND010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.denovo.140, whole genome shotgun sequence	907..1782	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNIND010000191.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.guided.144, whole genome shotgun sequence	602..1477	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNIND010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.denovo.130, whole genome shotgun sequence	3189..4402	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIND010000189.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.guided.131, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNIND010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.denovo.082, whole genome shotgun sequence	17119..17958	Sulfamethoxazole	U12338	sul1	100	840/840	ABNIND010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.guided.120, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNIND010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.denovo.082, whole genome shotgun sequence	3403..4602	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNIND010000186.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.guided.107, whole genome shotgun sequence	7849..9048	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNIND010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.denovo.067, whole genome shotgun sequence	9109..9668	enterobacteriales	IncFII(pEH01)	99.17	726 / 726	ABNIND010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323561 SAMN36717210-rid18891843.denovo.112, whole genome shotgun sequence	7926..8651																																																avrA	ABNIND010000026.1	39430..40299	99.655	870	0						
GCA_032348195.1_PDT001829805.1_genomic.fna	Salmonella_enterica	0.5204	474.427 KB	4	aroC_104,dnaN_100,hemD_54,hisD_78,purE_104,sucA_9,thrA_48	292	8:z4,z24:-	6	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,floR,floR,sul2,sul2,sul2,tet(A),tet(A)	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_104	dnaN	100	100	dnaN_100	hemD	100	100	hemD_54	hisD	100	100	hisD_78	purE	100	100	purE_104	sucA	100	100	sucA_9	thrA	100	100	thrA_48	8	z4,z24	-	Salmonella enterica subspecies enterica (subspecies I)	Albany or Duesseldorf	The predicted serotypes share the same general formula: 8:z4,z24:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNINE010000001.1 Salmonella enterica strain MPSPSA2176-1 SAMN36717192-rid18891763.denovo.01, whole genome shotgun sequence	784284..784721	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	99.88	804/804	ABNINE010000022.1 Salmonella enterica strain MPSPSA2176-1 SAMN36717192-rid18891763.denovo.29, whole genome shotgun sequence	2..805	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNINE010000022.1 Salmonella enterica strain MPSPSA2176-1 SAMN36717192-rid18891763.denovo.29, whole genome shotgun sequence	2..805	Streptomycin	AF313472	aac(6')-Iaa	98.63	438/438	ABNINE010000034.1 Salmonella enterica strain MPSPSA2176-1 SAMN36717192-rid18891763.guided.19, whole genome shotgun sequence	12662..13099	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	99.88	804/804	ABNINE010000038.1 Salmonella enterica strain MPSPSA2176-1 SAMN36717192-rid18891763.guided.27, whole genome shotgun sequence	1246..2049	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNINE010000038.1 Salmonella enterica strain MPSPSA2176-1 SAMN36717192-rid18891763.guided.27, whole genome shotgun sequence	1246..2049	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	ABNINE010000039.1 Salmonella enterica strain MPSPSA2176-1 SAMN36717192-rid18891763.guided.28, whole genome shotgun sequence	1246..2049	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	ABNINE010000039.1 Salmonella enterica strain MPSPSA2176-1 SAMN36717192-rid18891763.guided.28, whole genome shotgun sequence	1246..2049	Streptomycin	AF313472	aph(6)-Id	99.88	837/837	ABNINE010000040.1 Salmonella enterica strain MPSPSA2176-1 SAMN36717192-rid18891763.guided.33, whole genome shotgun sequence	307..1143	Streptomycin	M28829	floR	98.11	1214/1215	ABNINE010000021.1 Salmonella enterica strain MPSPSA2176-1 SAMN36717192-rid18891763.denovo.26, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNINE010000037.1 Salmonella enterica strain MPSPSA2176-1 SAMN36717192-rid18891763.guided.25, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNINE010000022.1 Salmonella enterica strain MPSPSA2176-1 SAMN36717192-rid18891763.denovo.29, whole genome shotgun sequence	866..1681	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNINE010000038.1 Salmonella enterica strain MPSPSA2176-1 SAMN36717192-rid18891763.guided.27, whole genome shotgun sequence	370..1185	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNINE010000039.1 Salmonella enterica strain MPSPSA2176-1 SAMN36717192-rid18891763.guided.28, whole genome shotgun sequence	370..1185	Sulfamethoxazole	AY034138	tet(A)	99.83	1200/1200	ABNINE010000020.1 Salmonella enterica strain MPSPSA2176-1 SAMN36717192-rid18891763.denovo.24, whole genome shotgun sequence	612..1811	Doxycycline, Tetracycline	AY196695	tet(A)	99.83	1200/1200	ABNINE010000036.1 Salmonella enterica strain MPSPSA2176-1 SAMN36717192-rid18891763.guided.23, whole genome shotgun sequence	1308..2507	Doxycycline, Tetracycline	AY196695																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																						avrA	ABNINE010000002.1	39430..40299	99.08	870	0						
GCA_032348215.1_PDT001829804.1_genomic.fna	Salmonella_enterica	0.5219	226.25 KB	8	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,floR,floR,sul2,sul2	1	parC_p.T57S	2	IncI1-I(Alpha),IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNINF010000007.1 Salmonella enterica strain MPSPSA2176-2 SAMN36717186-rid18891753.denovo.07, whole genome shotgun sequence	61877..62314	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNINF010000042.1 Salmonella enterica strain MPSPSA2176-2 SAMN36717186-rid18891753.denovo.45, whole genome shotgun sequence	1159..1950	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNINF010000042.1 Salmonella enterica strain MPSPSA2176-2 SAMN36717186-rid18891753.denovo.45, whole genome shotgun sequence	1159..1950	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	99.09	438/438	ABNINF010000062.1 Salmonella enterica strain MPSPSA2176-2 SAMN36717186-rid18891753.guided.40, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNINF010000063.1 Salmonella enterica strain MPSPSA2176-2 SAMN36717186-rid18891753.guided.48, whole genome shotgun sequence	1200..1991	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNINF010000063.1 Salmonella enterica strain MPSPSA2176-2 SAMN36717186-rid18891753.guided.48, whole genome shotgun sequence	1200..1991	Spectinomycin, Streptomycin	JQ414041	floR	98.19	1214/1215	ABNINF010000046.1 Salmonella enterica strain MPSPSA2176-2 SAMN36717186-rid18891753.denovo.52, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNINF010000065.1 Salmonella enterica strain MPSPSA2176-2 SAMN36717186-rid18891753.guided.51, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNINF010000045.1 Salmonella enterica strain MPSPSA2176-2 SAMN36717186-rid18891753.denovo.50, whole genome shotgun sequence	328..1143	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNINF010000064.1 Salmonella enterica strain MPSPSA2176-2 SAMN36717186-rid18891753.guided.49, whole genome shotgun sequence	1483..2298	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNINF010000020.1 Salmonella enterica strain MPSPSA2176-2 SAMN36717186-rid18891753.denovo.20, whole genome shotgun sequence	71712..71853	enterobacteriales	IncR	100	251 / 251	ABNINF010000027.1 Salmonella enterica strain MPSPSA2176-2 SAMN36717186-rid18891753.denovo.27, whole genome shotgun sequence	30050..30300																																																avrA	ABNINF010000002.1	39446..40315	99.54	870	0						
GCA_032348225.1_PDT001829803.1_genomic.fna	Salmonella_enterica	0.5209	375.657 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	13	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,floR,floR,qnrB19,qnrB19,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNING010000011.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.11, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNING010000018.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.19, whole genome shotgun sequence	66777..67613	Streptomycin	M28829	aph(3'')-Ib	100	529/804	ABNING010000018.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.19, whole genome shotgun sequence	68456..68984	Streptomycin	AF321551	aph(3'')-Ib	99.2957746478873	284/804	ABNING010000018.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.19, whole genome shotgun sequence	67613..67894	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNING010000056.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.guided.32, whole genome shotgun sequence	4150..4986	Streptomycin	M28829	aph(3'')-Ib	100	529/804	ABNING010000056.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.guided.32, whole genome shotgun sequence	5829..6357	Streptomycin	AF321551	aph(3'')-Ib	99.2957746478873	284/804	ABNING010000056.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.guided.32, whole genome shotgun sequence	4986..5267	Streptomycin	AF321551	aac(6')-Iaa	97.03	438/438	ABNING010000057.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.guided.36, whole genome shotgun sequence	2849..3286	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	ABNING010000019.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.20, whole genome shotgun sequence	5461..6321	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNING010000019.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.20, whole genome shotgun sequence	5461..6321	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNING010000019.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.20, whole genome shotgun sequence	5461..6321	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNING010000019.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.20, whole genome shotgun sequence	5461..6321	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNING010000019.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.20, whole genome shotgun sequence	5461..6321	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	ABNING010000054.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.guided.26, whole genome shotgun sequence	17307..18167	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNING010000054.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.guided.26, whole genome shotgun sequence	17307..18167	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNING010000054.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.guided.26, whole genome shotgun sequence	17307..18167	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNING010000054.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.guided.26, whole genome shotgun sequence	17307..18167	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNING010000054.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.guided.26, whole genome shotgun sequence	17307..18167	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNING010000018.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.19, whole genome shotgun sequence	64607..65820	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNING010000056.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.guided.32, whole genome shotgun sequence	1980..3193	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNING010000034.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.40, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNING010000058.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.guided.39, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABNING010000018.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.19, whole genome shotgun sequence	69045..69860	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNING010000056.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.guided.32, whole genome shotgun sequence	6418..7233	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNING010000019.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.20, whole genome shotgun sequence	7250..8449	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNING010000054.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.guided.26, whole genome shotgun sequence	19096..20295	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNING010000018.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.19, whole genome shotgun sequence	67963..68436	Trimethoprim	AF393510	dfrA14	100	474/474	ABNING010000056.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.guided.32, whole genome shotgun sequence	5336..5809	Trimethoprim	AF393510																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNING010000034.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.40, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNING010000058.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.guided.39, whole genome shotgun sequence	2334..2464		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNING010000027.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.29, whole genome shotgun sequence	1997..2138		enterobacteriales	IncX1	98.94	377 / 377	ABNING010000019.1 Salmonella enterica strain W204-17-1 SAMN36717191-rid18890873.denovo.20, whole genome shotgun sequence	16086..16462																																		avrA	ABNING010000002.1	122176..123045	98.966	870	0						
GCA_032348255.1_PDT001829801.1_genomic.fna	Salmonella_enterica	0.5219	225.556 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNINH010000004.1 Salmonella enterica strain MPSPSA2178-1 SAMN36717181-rid18891733.denovo.04, whole genome shotgun sequence	68382..68819	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNINH010000050.1 Salmonella enterica strain MPSPSA2178-1 SAMN36717181-rid18891733.guided.33, whole genome shotgun sequence	17538..17975	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNINH010000017.1 Salmonella enterica strain MPSPSA2178-1 SAMN36717181-rid18891733.denovo.17, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNINH010000017.1 Salmonella enterica strain MPSPSA2178-1 SAMN36717181-rid18891733.denovo.17, whole genome shotgun sequence	30407..30668																																																avrA	ABNINH010000005.1	97953..98821	100	869	0						
GCA_032348275.1_PDT001829800.1_genomic.fna	Salmonella_enterica	0.523	41.947 KB	36	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNINJ010000062.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323773 SAMN36717183-rid18891723.denovo.062, whole genome shotgun sequence	11494..11931	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNINJ010000219.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323773 SAMN36717183-rid18891723.guided.093, whole genome shotgun sequence	8046..8483	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNINJ010000156.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323773 SAMN36717183-rid18891723.denovo.159, whole genome shotgun sequence	245..386																																																						avrA	ABNINJ010000035.1	39469..40338	99.54	870	0						
GCA_032348295.1_PDT001829799.1_genomic.fna	Salmonella_enterica	0.522	763.384 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNINK010000002.1 Salmonella enterica strain W204-20-1 SAMN36717187-rid18890863.denovo.02, whole genome shotgun sequence	586307..586744	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNINK010000030.1 Salmonella enterica strain W204-20-1 SAMN36717187-rid18890863.guided.14, whole genome shotgun sequence	12824..13261	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNINK010000018.1 Salmonella enterica strain W204-20-1 SAMN36717187-rid18890863.denovo.21, whole genome shotgun sequence	3134..3264	enterobacteriales	Col(pHAD28)	90.08	131 / 131	ABNINK010000019.1 Salmonella enterica strain W204-20-1 SAMN36717187-rid18890863.denovo.22, whole genome shotgun sequence	254..384																																																avrA	ABNINK010000001.1	786437..787307	99.656	871	0						
GCA_032348305.1_PDT001829798.1_genomic.fna	Salmonella_enterica	0.5225	397.971 KB	4	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aac(6')-Iaa,floR,floR,qnrS1,qnrS1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNINM010000001.1 Salmonella enterica strain MPSPSA2177-1 SAMN36717184-rid18890853.denovo.01, whole genome shotgun sequence	982359..982796	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNINM010000031.1 Salmonella enterica strain MPSPSA2177-1 SAMN36717184-rid18890853.guided.20, whole genome shotgun sequence	2358..2795	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	ABNINM010000018.1 Salmonella enterica strain MPSPSA2177-1 SAMN36717184-rid18890853.denovo.21, whole genome shotgun sequence	6455..7668	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNINM010000034.1 Salmonella enterica strain MPSPSA2177-1 SAMN36717184-rid18890853.guided.25, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNINM010000006.1 Salmonella enterica strain MPSPSA2177-1 SAMN36717184-rid18890853.denovo.06, whole genome shotgun sequence	333943..334599	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNINM010000029.1 Salmonella enterica strain MPSPSA2177-1 SAMN36717184-rid18890853.guided.15, whole genome shotgun sequence	47024..47680	Ciprofloxacin	AB187515	sul1	100	840/840	ABNINM010000018.1 Salmonella enterica strain MPSPSA2177-1 SAMN36717184-rid18890853.denovo.21, whole genome shotgun sequence	1065..1904	Sulfamethoxazole	U12338	sul1	100	840/840	ABNINM010000033.1 Salmonella enterica strain MPSPSA2177-1 SAMN36717184-rid18890853.guided.23, whole genome shotgun sequence	199..1038	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNINM010000018.1 Salmonella enterica strain MPSPSA2177-1 SAMN36717184-rid18890853.denovo.21, whole genome shotgun sequence	4580..5854	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNINM010000033.1 Salmonella enterica strain MPSPSA2177-1 SAMN36717184-rid18890853.guided.23, whole genome shotgun sequence	3714..4988	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNINM010000018.1 Salmonella enterica strain MPSPSA2177-1 SAMN36717184-rid18890853.denovo.21, whole genome shotgun sequence	2949..3422	Trimethoprim	X00926	dfrA1	100	474/474	ABNINM010000033.1 Salmonella enterica strain MPSPSA2177-1 SAMN36717184-rid18890853.guided.23, whole genome shotgun sequence	2083..2556	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNINM010000011.1	39348..40216	99.655	869	0						
GCA_032348335.1_PDT001829802.1_genomic.fna	Salmonella_enterica	0.5223	501.619 KB	3	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aac(6')-Iaa,floR,floR,qnrS1,qnrS1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNINI010000001.1 Salmonella enterica strain MPSPSA2177-2 SAMN36717189-rid18891743.denovo.01, whole genome shotgun sequence	1327640..1328077	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNINI010000029.1 Salmonella enterica strain MPSPSA2177-2 SAMN36717189-rid18891743.guided.17, whole genome shotgun sequence	5655..6092	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	ABNINI010000016.1 Salmonella enterica strain MPSPSA2177-2 SAMN36717189-rid18891743.denovo.19, whole genome shotgun sequence	6664..7877	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNINI010000033.1 Salmonella enterica strain MPSPSA2177-2 SAMN36717189-rid18891743.guided.23, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNINI010000005.1 Salmonella enterica strain MPSPSA2177-2 SAMN36717189-rid18891743.denovo.05, whole genome shotgun sequence	333218..333874	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNINI010000028.1 Salmonella enterica strain MPSPSA2177-2 SAMN36717189-rid18891743.guided.14, whole genome shotgun sequence	40431..41087	Ciprofloxacin	AB187515	sul1	100	840/840	ABNINI010000016.1 Salmonella enterica strain MPSPSA2177-2 SAMN36717189-rid18891743.denovo.19, whole genome shotgun sequence	1274..2113	Sulfamethoxazole	U12338	sul1	100	840/840	ABNINI010000032.1 Salmonella enterica strain MPSPSA2177-2 SAMN36717189-rid18891743.guided.21, whole genome shotgun sequence	991..1830	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNINI010000016.1 Salmonella enterica strain MPSPSA2177-2 SAMN36717189-rid18891743.denovo.19, whole genome shotgun sequence	4789..6063	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNINI010000032.1 Salmonella enterica strain MPSPSA2177-2 SAMN36717189-rid18891743.guided.21, whole genome shotgun sequence	4506..5780	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNINI010000016.1 Salmonella enterica strain MPSPSA2177-2 SAMN36717189-rid18891743.denovo.19, whole genome shotgun sequence	3158..3631	Trimethoprim	X00926	dfrA1	100	474/474	ABNINI010000032.1 Salmonella enterica strain MPSPSA2177-2 SAMN36717189-rid18891743.guided.21, whole genome shotgun sequence	2875..3348	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNINI010000003.1	213353..214221	99.655	869	0						
GCA_032348375.1_PDT001829797.1_genomic.fna	Salmonella_enterica	0.5219	81.099 KB	20	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNINL010000007.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323774 SAMN36717185-rid18890843.denovo.007, whole genome shotgun sequence	15508..15945	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNINL010000121.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323774 SAMN36717185-rid18890843.guided.083, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNINL010000092.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323774 SAMN36717185-rid18890843.denovo.095, whole genome shotgun sequence	53..194																																																						avrA	ABNINL010000003.1	105307..106176	99.54	870	0						
GCA_032348395.1_PDT001829792.1_genomic.fna	Salmonella_enterica	0.523	59.15 KB	23	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNINO010000053.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323775 SAMN36717188-rid18891683.denovo.053, whole genome shotgun sequence	12541..12978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNINO010000153.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323775 SAMN36717188-rid18891683.guided.103, whole genome shotgun sequence	2168..2605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032348415.1_PDT001829794.1_genomic.fna	Salmonella_enterica	0.5234	273.194 KB	7	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	-:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	-	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNINN010000008.1 Salmonella enterica strain PNUSAS366785 SAMN36717180-rid18891693.denovo.08, whole genome shotgun sequence	226014..226451	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNINN010000039.1 Salmonella enterica strain PNUSAS366785 SAMN36717180-rid18891693.guided.29, whole genome shotgun sequence	14251..14688	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNINN010000004.1	130793..131662	98.966	870	0						
GCA_032348435.1_PDT001829791.1_genomic.fna	Salmonella_enterica	0.5228	75.564 KB	20	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNINP010000019.1 Salmonella enterica subsp. enterica strain FSIS12323772 SAMN36717176-rid18891673.denovo.019, whole genome shotgun sequence	62364..62801	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNINP010000146.1 Salmonella enterica subsp. enterica strain FSIS12323772 SAMN36717176-rid18891673.guided.063, whole genome shotgun sequence	14336..14773	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNINP010000106.1 Salmonella enterica subsp. enterica strain FSIS12323772 SAMN36717176-rid18891673.denovo.109, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABNINP010000099.1 Salmonella enterica subsp. enterica strain FSIS12323772 SAMN36717176-rid18891673.denovo.102, whole genome shotgun sequence	3175..3285																																																avrA	ABNINP010000006.1	62007..62876	99.425	870	0						
GCA_032348455.1_PDT001829789.1_genomic.fna	Salmonella_enterica	0.5229	54.161 KB	29	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNINQ010000033.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323771 SAMN36717175-rid18890823.denovo.033, whole genome shotgun sequence	31058..31495	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNINQ010000183.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323771 SAMN36717175-rid18890823.guided.064, whole genome shotgun sequence	14158..14595	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNINQ010000136.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323771 SAMN36717175-rid18890823.denovo.139, whole genome shotgun sequence	186..316																																																						avrA	ABNINQ010000019.1	61525..62394	99.425	870	0						
GCA_032348475.1_PDT001829788.1_genomic.fna	Salmonella_enterica	0.5229	35.99 KB	39	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNINR010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323768 SAMN36717177-rid18890813.denovo.135, whole genome shotgun sequence	1786..2223	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNINR010000246.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323768 SAMN36717177-rid18890813.guided.134, whole genome shotgun sequence	7344..7781	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNINR010000182.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323768 SAMN36717177-rid18890813.denovo.185, whole genome shotgun sequence	898..1457																																																						avrA	ABNINR010000033.1	39430..40299	99.655	870	0						
GCA_032348495.1_PDT001829782.1_genomic.fna	Salmonella_enterica	0.5205	341.161 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_46	99	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_46	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNINT010000001.1 Salmonella enterica strain MPSPSA2181-1 SAMN36717145-rid18890783.denovo.01, whole genome shotgun sequence	145366..145803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNINT010000043.1 Salmonella enterica strain MPSPSA2181-1 SAMN36717145-rid18890783.guided.35, whole genome shotgun sequence	6855..7292	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.69	643 / 643	ABNINT010000019.1 Salmonella enterica strain MPSPSA2181-1 SAMN36717145-rid18890783.denovo.19, whole genome shotgun sequence	36043..36685	enterobacteriales	IncFII(S)	100	262 / 262	ABNINT010000019.1 Salmonella enterica strain MPSPSA2181-1 SAMN36717145-rid18890783.denovo.19, whole genome shotgun sequence	51770..52031																																																avrA	ABNINT010000005.1	175019..175888	99.77	870	0						
GCA_032348515.1_PDT001829780.1_genomic.fna	Salmonella_enterica	0.5218	267.152 KB	7	aroC_13,dnaN_11,hemD_25,hisD_197,purE_12,sucA_71,thrA_4	548	21:b:e,n,x	7	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,blaCMY-2,blaCMY-2,qnrB19,qnrB19,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	3	Col(BS512),Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_197	purE	100	100	purE_12	sucA	100	100	sucA_71	thrA	100	100	thrA_4	21	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Minnesota		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNINS010000003.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.denovo.03, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197	aadA1	99.87	792/792	ABNINS010000031.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.denovo.36, whole genome shotgun sequence	1159..1950	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	ABNINS010000031.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.denovo.36, whole genome shotgun sequence	1159..1950	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNINS010000039.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.denovo.48, whole genome shotgun sequence	137..952	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	V00359	aac(6')-Iaa	97.95	438/438	ABNINS010000052.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.guided.30, whole genome shotgun sequence	13426..13863	Amikacin, Tobramycin	NC_003197	aadA1	99.87	792/792	ABNINS010000054.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.guided.35, whole genome shotgun sequence	1200..1991	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	ABNINS010000054.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.guided.35, whole genome shotgun sequence	1200..1991	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNINS010000058.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.guided.47, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	V00359	blaCMY-2	100	1146/1146	ABNINS010000022.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.denovo.22, whole genome shotgun sequence	42079..43224	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNINS010000050.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.guided.28, whole genome shotgun sequence	16839..17984	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	qnrB19	100	645/645	ABNINS010000034.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.denovo.41, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNINS010000056.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.guided.40, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABNINS010000028.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.denovo.32, whole genome shotgun sequence	7571..8386	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNINS010000057.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.guided.43, whole genome shotgun sequence	685..1500	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNINS010000032.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.denovo.38, whole genome shotgun sequence	1674..2873	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNINS010000055.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.guided.37, whole genome shotgun sequence	1267..2466	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(BS512)	100	233 / 233	ABNINS010000035.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.denovo.42, whole genome shotgun sequence	400..632	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNINS010000034.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.denovo.41, whole genome shotgun sequence	1522..1652		enterobacteriales	Col(pHAD28)	100	131 / 131	ABNINS010000056.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.guided.40, whole genome shotgun sequence	2334..2464		enterobacteriales	IncC	100	417 / 417	ABNINS010000023.1 Salmonella enterica strain W207-23-1 SAMN36717153-rid18891613.denovo.23, whole genome shotgun sequence	38349..38765																																		avrA	ABNINS010000001.1	552133..553002	99.31	870	0						
GCA_032348575.1_PDT001829771.1_genomic.fna	Salmonella_enterica	0.5218	168.749 KB	7	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNINW010000006.1 Salmonella enterica strain MPSPSA2182-2 SAMN36717120-rid18891563.denovo.06, whole genome shotgun sequence	207829..208266	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNINW010000041.1 Salmonella enterica strain MPSPSA2182-2 SAMN36717120-rid18891563.guided.27, whole genome shotgun sequence	29928..30365	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNINW010000035.1 Salmonella enterica strain MPSPSA2182-2 SAMN36717120-rid18891563.denovo.38, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNINW010000044.1 Salmonella enterica strain MPSPSA2182-2 SAMN36717120-rid18891563.guided.40, whole genome shotgun sequence	717..1361	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNINW010000035.1 Salmonella enterica strain MPSPSA2182-2 SAMN36717120-rid18891563.denovo.38, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNINW010000044.1 Salmonella enterica strain MPSPSA2182-2 SAMN36717120-rid18891563.guided.40, whole genome shotgun sequence	61..191																																																avrA	ABNINW010000002.1	93982..94851	99.54	870	0						
GCA_032348605.1_PDT001829770.1_genomic.fna	Salmonella_enterica	0.5194	182.892 KB	8	aroC_293,dnaN_264,hemD_80,hisD_257,purE_294,sucA_271,thrA_236	1208	42:r:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_293	dnaN	100	100	dnaN_264	hemD	100	100	hemD_80	hisD	100	100	hisD_257	purE	100	100	purE_294	sucA	100	100	sucA_271	thrA	100	100	thrA_236	42	r	-	Salmonella enterica subspecies salamae (subspecies II)	II 42:r:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.66	438/438	ABNINX010000001.1 Salmonella enterica strain W209-12-1 SAMN36717124-rid18891553.denovo.01, whole genome shotgun sequence	390762..391199	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.66	438/438	ABNINX010000063.1 Salmonella enterica strain W209-12-1 SAMN36717124-rid18891553.guided.39, whole genome shotgun sequence	3744..4181	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032348615.1_PDT001829767.1_genomic.fna	Salmonella_enterica	0.5204	271.387 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_46	99	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_46	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIOA010000001.1 Salmonella enterica strain MPSPSA2181-2 SAMN36717122-rid18891533.denovo.01, whole genome shotgun sequence	567059..567496	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIOA010000052.1 Salmonella enterica strain MPSPSA2181-2 SAMN36717122-rid18891533.guided.22, whole genome shotgun sequence	13793..14230	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.69	643 / 643	ABNIOA010000019.1 Salmonella enterica strain MPSPSA2181-2 SAMN36717122-rid18891533.denovo.19, whole genome shotgun sequence	36043..36685	enterobacteriales	IncFII(S)	100	262 / 262	ABNIOA010000019.1 Salmonella enterica strain MPSPSA2181-2 SAMN36717122-rid18891533.denovo.19, whole genome shotgun sequence	51770..52031																																																avrA	ABNIOA010000004.1	174809..175678	99.77	870	0						
GCA_032348645.1_PDT001829768.1_genomic.fna	Salmonella_enterica	0.5224	250.842 KB	6	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNINY010000001.1 Salmonella enterica strain MPSPSA2180 SAMN36717123-rid18890733.denovo.01, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNINY010000035.1 Salmonella enterica strain MPSPSA2180 SAMN36717123-rid18890733.guided.24, whole genome shotgun sequence	2403..2840	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNINY010000027.1 Salmonella enterica strain MPSPSA2180 SAMN36717123-rid18890733.denovo.31, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNINY010000038.1 Salmonella enterica strain MPSPSA2180 SAMN36717123-rid18890733.guided.30, whole genome shotgun sequence	532..1176	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNINY010000027.1 Salmonella enterica strain MPSPSA2180 SAMN36717123-rid18890733.denovo.31, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNINY010000038.1 Salmonella enterica strain MPSPSA2180 SAMN36717123-rid18890733.guided.30, whole genome shotgun sequence	2575..2705																																																avrA	ABNINY010000017.1	36961..37830	99.425	870	0						
GCA_032348675.1_PDT001829766.1_genomic.fna	Salmonella_enterica	0.5202	324.147 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_46	99	4:i:1,2	1	aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_46	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNINZ010000001.1 Salmonella enterica strain MPSPSA2182-1 SAMN36717118-rid18891523.denovo.01, whole genome shotgun sequence	480062..480499	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(S)	99.69	643 / 643	ABNINZ010000019.1 Salmonella enterica strain MPSPSA2182-1 SAMN36717118-rid18891523.denovo.19, whole genome shotgun sequence	36043..36685	enterobacteriales	IncFII(S)	100	262 / 262	ABNINZ010000019.1 Salmonella enterica strain MPSPSA2182-1 SAMN36717118-rid18891523.denovo.19, whole genome shotgun sequence	51770..52031																																																avrA	ABNINZ010000004.1	174652..175521	99.77	870	0						
GCA_032348695.1_PDT001829765.1_genomic.fna	Salmonella_enterica	0.5236	47.234 KB	32	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIOB010000014.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323765 SAMN36717107-rid18891513.denovo.014, whole genome shotgun sequence	16050..16487	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIOB010000237.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323765 SAMN36717107-rid18891513.guided.080, whole genome shotgun sequence	14160..14597	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	262 / 262	ABNIOB010000148.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323765 SAMN36717107-rid18891513.denovo.150, whole genome shotgun sequence	3344..3605																																																						avrA	ABNIOB010000037.1	39685..40554	99.54	870	0						
GCA_032348715.1_PDT001829763.1_genomic.fna	Salmonella_enterica	0.5229	321.415 KB	5	aroC_140,dnaN_105,hemD_85,hisD_93,purE_14,sucA_10,thrA_3	440	35:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_85	hisD	100	100	hisD_93	purE	100	100	purE_14	sucA	100	100	sucA_10	thrA	100	100	thrA_3	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIOD010000002.1 Salmonella enterica strain MPSPSA2184-3 SAMN36717101-rid18890723.denovo.02, whole genome shotgun sequence	477515..477952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIOD010000036.1 Salmonella enterica strain MPSPSA2184-3 SAMN36717101-rid18890723.guided.20, whole genome shotgun sequence	10127..10564	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIOD010000029.1 Salmonella enterica strain MPSPSA2184-3 SAMN36717101-rid18890723.denovo.32, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIOD010000039.1 Salmonella enterica strain MPSPSA2184-3 SAMN36717101-rid18890723.guided.34, whole genome shotgun sequence	620..1264	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNIOD010000027.1 Salmonella enterica strain MPSPSA2184-3 SAMN36717101-rid18890723.denovo.30, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIOD010000029.1 Salmonella enterica strain MPSPSA2184-3 SAMN36717101-rid18890723.denovo.32, whole genome shotgun sequence	1150..1280		enterobacteriales	Col(pHAD28)	92.5	120 / 131	ABNIOD010000030.1 Salmonella enterica strain MPSPSA2184-3 SAMN36717101-rid18890723.denovo.33, whole genome shotgun sequence	1958..2077		enterobacteriales	Col440I	91.23	114 / 114	ABNIOD010000039.1 Salmonella enterica strain MPSPSA2184-3 SAMN36717101-rid18890723.guided.34, whole genome shotgun sequence	3..116																																													
GCA_032348735.1_PDT001829764.1_genomic.fna	Salmonella_enterica	0.5232	49.269 KB	35	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIOC010000011.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.denovo.011, whole genome shotgun sequence	62412..62849	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNIOC010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.denovo.083, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIOC010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.denovo.083, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNIOC010000143.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.denovo.148, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNIOC010000143.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.denovo.148, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNIOC010000206.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.guided.062, whole genome shotgun sequence	15611..16048	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNIOC010000207.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.guided.084, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIOC010000207.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.guided.084, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNIOC010000210.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.guided.146, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNIOC010000210.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.guided.146, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNIOC010000137.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.denovo.140, whole genome shotgun sequence	3189..4402	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIOC010000209.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.guided.144, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNIOC010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.denovo.083, whole genome shotgun sequence	17100..17939	Sulfamethoxazole	U12338	sul1	100	840/840	ABNIOC010000207.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.guided.084, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNIOC010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.denovo.083, whole genome shotgun sequence	3384..4583	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNIOC010000207.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.guided.084, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNIOC010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323766 SAMN36717108-rid18891503.denovo.163, whole genome shotgun sequence	932..1491																																																						avrA	ABNIOC010000043.1	39430..40299	99.655	870	0						
GCA_032348755.1_PDT001829759.1_genomic.fna	Salmonella_enterica	0.5233	483.147 KB	3	aroC_140,dnaN_105,hemD_85,hisD_93,purE_14,sucA_10,thrA_3	440	35:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_85	hisD	100	100	hisD_93	purE	100	100	purE_14	sucA	100	100	sucA_10	thrA	100	100	thrA_3	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIOE010000001.1 Salmonella enterica strain MPSPSA2183-1 SAMN36717109-rid18891473.denovo.01, whole genome shotgun sequence	477515..477952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIOE010000029.1 Salmonella enterica strain MPSPSA2183-1 SAMN36717109-rid18891473.guided.19, whole genome shotgun sequence	14884..15321	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIOE010000022.1 Salmonella enterica strain MPSPSA2183-1 SAMN36717109-rid18891473.denovo.25, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIOE010000031.1 Salmonella enterica strain MPSPSA2183-1 SAMN36717109-rid18891473.guided.27, whole genome shotgun sequence	687..1331	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIOE010000022.1 Salmonella enterica strain MPSPSA2183-1 SAMN36717109-rid18891473.denovo.25, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	92.5	120 / 131	ABNIOE010000023.1 Salmonella enterica strain MPSPSA2183-1 SAMN36717109-rid18891473.denovo.26, whole genome shotgun sequence	1958..2077		enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIOE010000031.1 Salmonella enterica strain MPSPSA2183-1 SAMN36717109-rid18891473.guided.27, whole genome shotgun sequence	31..161																																																				
GCA_032348775.1_PDT001829756.1_genomic.fna	Salmonella_enterica	0.5225	82.58 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIOG010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323763 SAMN36717102-rid18890683.denovo.003, whole genome shotgun sequence	12587..13024	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNIOG010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323763 SAMN36717102-rid18890683.denovo.059, whole genome shotgun sequence	22819..23610	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIOG010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323763 SAMN36717102-rid18890683.denovo.059, whole genome shotgun sequence	22819..23610	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNIOG010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323763 SAMN36717102-rid18890683.guided.081, whole genome shotgun sequence	13909..14346	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNIOG010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323763 SAMN36717102-rid18890683.guided.083, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIOG010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323763 SAMN36717102-rid18890683.guided.083, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNIOG010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323763 SAMN36717102-rid18890683.denovo.059, whole genome shotgun sequence	21475..22314	Sulfamethoxazole	U12338	sul1	100	840/840	ABNIOG010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323763 SAMN36717102-rid18890683.guided.083, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNIOG010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323763 SAMN36717102-rid18890683.denovo.059, whole genome shotgun sequence	7759..8958	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNIOG010000147.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323763 SAMN36717102-rid18890683.guided.093, whole genome shotgun sequence	1858..3057	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNIOG010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323763 SAMN36717102-rid18890683.denovo.106, whole genome shotgun sequence	2178..2737																																																						avrA	ABNIOG010000008.1	81424..82293	99.655	870	0						
GCA_032348795.1_PDT001829758.1_genomic.fna	Salmonella_enterica	0.5234	339.569 KB	5	aroC_140,dnaN_105,hemD_85,hisD_93,purE_14,sucA_10,thrA_3	440	35:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_85	hisD	100	100	hisD_93	purE	100	100	purE_14	sucA	100	100	sucA_10	thrA	100	100	thrA_3	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIOF010000001.1 Salmonella enterica strain MPSPSA2184-1 SAMN36717111-rid18890703.denovo.01, whole genome shotgun sequence	625396..625833	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIOF010000033.1 Salmonella enterica strain MPSPSA2184-1 SAMN36717111-rid18890703.guided.21, whole genome shotgun sequence	1006..1443	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIOF010000026.1 Salmonella enterica strain MPSPSA2184-1 SAMN36717111-rid18890703.denovo.29, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIOF010000035.1 Salmonella enterica strain MPSPSA2184-1 SAMN36717111-rid18890703.guided.31, whole genome shotgun sequence	620..1264	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNIOF010000024.1 Salmonella enterica strain MPSPSA2184-1 SAMN36717111-rid18890703.denovo.27, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIOF010000026.1 Salmonella enterica strain MPSPSA2184-1 SAMN36717111-rid18890703.denovo.29, whole genome shotgun sequence	1150..1280		enterobacteriales	Col(pHAD28)	92.5	120 / 131	ABNIOF010000027.1 Salmonella enterica strain MPSPSA2184-1 SAMN36717111-rid18890703.denovo.30, whole genome shotgun sequence	1958..2077		enterobacteriales	Col440I	91.23	114 / 114	ABNIOF010000035.1 Salmonella enterica strain MPSPSA2184-1 SAMN36717111-rid18890703.guided.31, whole genome shotgun sequence	3..116																																													
GCA_032348815.1_PDT001829755.1_genomic.fna	Salmonella_enterica	0.5234	49.535 KB	31	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIOI010000049.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323764 SAMN36717104-rid18891463.denovo.049, whole genome shotgun sequence	17145..17582	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIOI010000197.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323764 SAMN36717104-rid18891463.guided.074, whole genome shotgun sequence	14100..14537	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIOI010000162.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323764 SAMN36717104-rid18891463.denovo.165, whole genome shotgun sequence	887..1529	enterobacteriales	IncFII(S)	100	262 / 262	ABNIOI010000126.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323764 SAMN36717104-rid18891463.denovo.129, whole genome shotgun sequence	3373..3634																																																avrA	ABNIOI010000034.1	43550..44419	99.54	870	0						
GCA_032348835.1_PDT001829753.1_genomic.fna	Salmonella_enterica	0.5233	321.019 KB	4	aroC_140,dnaN_105,hemD_85,hisD_93,purE_14,sucA_10,thrA_3	440	35:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_85	hisD	100	100	hisD_93	purE	100	100	purE_14	sucA	100	100	sucA_10	thrA	100	100	thrA_3	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIOH010000001.1 Salmonella enterica strain MPSPSA2183-3 SAMN36717105-rid18890673.denovo.01, whole genome shotgun sequence	477514..477951	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIOH010000030.1 Salmonella enterica strain MPSPSA2183-3 SAMN36717105-rid18890673.guided.22, whole genome shotgun sequence	14149..14586	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIOH010000024.1 Salmonella enterica strain MPSPSA2183-3 SAMN36717105-rid18890673.denovo.27, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIOH010000032.1 Salmonella enterica strain MPSPSA2183-3 SAMN36717105-rid18890673.guided.29, whole genome shotgun sequence	687..1331	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIOH010000024.1 Salmonella enterica strain MPSPSA2183-3 SAMN36717105-rid18890673.denovo.27, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	92.5	120 / 131	ABNIOH010000025.1 Salmonella enterica strain MPSPSA2183-3 SAMN36717105-rid18890673.denovo.28, whole genome shotgun sequence	1958..2077		enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIOH010000032.1 Salmonella enterica strain MPSPSA2183-3 SAMN36717105-rid18890673.guided.29, whole genome shotgun sequence	31..161																																																				
GCA_032348855.1_PDT001829750.1_genomic.fna	Salmonella_enterica	0.5221	91.883 KB	19	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIOK010000022.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.denovo.022, whole genome shotgun sequence	62439..62876	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNIOK010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.denovo.056, whole genome shotgun sequence	22713..23504	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIOK010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.denovo.056, whole genome shotgun sequence	22713..23504	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNIOK010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.denovo.089, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNIOK010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.denovo.089, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNIOK010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.guided.047, whole genome shotgun sequence	15469..15906	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNIOK010000122.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.guided.083, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIOK010000122.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.guided.083, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNIOK010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.guided.092, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNIOK010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.guided.092, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNIOK010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.denovo.094, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNIOK010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.guided.093, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNIOK010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.denovo.087, whole genome shotgun sequence	2831..4044	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIOK010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.guided.090, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNIOK010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.denovo.056, whole genome shotgun sequence	21369..22208	Sulfamethoxazole	U12338	sul1	100	840/840	ABNIOK010000122.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.guided.083, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNIOK010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.denovo.056, whole genome shotgun sequence	7653..8852	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNIOK010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.guided.068, whole genome shotgun sequence	7833..9032	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNIOK010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323761 SAMN36717082-rid18891443.denovo.063, whole genome shotgun sequence	14637..15196																																																						avrA	ABNIOK010000004.1	105251..106120	99.655	870	0						
GCA_032348875.1_PDT001829752.1_genomic.fna	Salmonella_enterica	0.5208	70.38 KB	27	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-VIa,aadA1,aadA1,sul1,sul1,tet(B),tet(B)	1	parC_p.T57S	5	Col(pHAD28),IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIOJ010000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.denovo.009, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNIOJ010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.denovo.073, whole genome shotgun sequence	13313..14215	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	99.75	792/792	ABNIOJ010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.denovo.073, whole genome shotgun sequence	14379..15170	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIOJ010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.denovo.073, whole genome shotgun sequence	14379..15170	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNIOJ010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.denovo.101, whole genome shotgun sequence	3632..4468	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNIOJ010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.denovo.101, whole genome shotgun sequence	4468..5271	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNIOJ010000159.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.guided.064, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIOJ010000162.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.guided.105, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNIOJ010000162.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.guided.105, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aac(3)-VIa	100	903/903	ABNIOJ010000163.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.guided.116, whole genome shotgun sequence	37..939	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	99.75	792/792	ABNIOJ010000165.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.guided.136, whole genome shotgun sequence	975..1766	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNIOJ010000165.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.guided.136, whole genome shotgun sequence	975..1766	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNIOJ010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.denovo.073, whole genome shotgun sequence	6474..7313	Sulfamethoxazole	U12338	sul1	100	840/840	ABNIOJ010000161.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.guided.102, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABNIOJ010000112.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.denovo.119, whole genome shotgun sequence	2253..3458	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNIOJ010000164.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.guided.118, whole genome shotgun sequence	2284..3489	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.15	113 / 131	ABNIOJ010000111.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.denovo.117, whole genome shotgun sequence	1410..1522	enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNIOJ010000108.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.denovo.113, whole genome shotgun sequence	1242..1923		enterobacteriales	IncFII	96.95	262 / 261	ABNIOJ010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.denovo.101, whole genome shotgun sequence	2748..3009		enterobacteriales	IncFII	96.95	262 / 261	ABNIOJ010000162.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.guided.105, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNIOJ010000077.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.denovo.080, whole genome shotgun sequence	3027..3168		enterobacteriales	IncX1	100	373 / 373	ABNIOJ010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323760 SAMN36717081-rid18890663.denovo.123, whole genome shotgun sequence	2732..3104																				avrA	ABNIOJ010000047.1	39484..40353	99.655	870	0						
GCA_032348895.1_PDT001829745.1_genomic.fna	Salmonella_enterica	0.5193	400.955 KB	5	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	5	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,floR,floR,qnrB19,qnrB19,tet(A),tet(A)	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),Col440I,IncHI2,IncHI2A	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIOM010000001.1 Salmonella enterica strain MPSPSA2185-1 SAMN36716692-rid18891413.denovo.01, whole genome shotgun sequence	396442..396879	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNIOM010000038.1 Salmonella enterica strain MPSPSA2185-1 SAMN36716692-rid18891413.guided.22, whole genome shotgun sequence	13835..14272	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNIOM010000029.1 Salmonella enterica strain MPSPSA2185-1 SAMN36716692-rid18891413.denovo.36, whole genome shotgun sequence	108..968	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNIOM010000043.1 Salmonella enterica strain MPSPSA2185-1 SAMN36716692-rid18891413.guided.35, whole genome shotgun sequence	1033..1893	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNIOM010000022.1 Salmonella enterica strain MPSPSA2185-1 SAMN36716692-rid18891413.denovo.24, whole genome shotgun sequence	6163..7376	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIOM010000041.1 Salmonella enterica strain MPSPSA2185-1 SAMN36716692-rid18891413.guided.30, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNIOM010000027.1 Salmonella enterica strain MPSPSA2185-1 SAMN36716692-rid18891413.denovo.32, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIOM010000042.1 Salmonella enterica strain MPSPSA2185-1 SAMN36716692-rid18891413.guided.33, whole genome shotgun sequence	620..1264	Ciprofloxacin	EU432277	tet(A)	100	1275/1275	ABNIOM010000022.1 Salmonella enterica strain MPSPSA2185-1 SAMN36716692-rid18891413.denovo.24, whole genome shotgun sequence	4288..5562	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNIOM010000040.1 Salmonella enterica strain MPSPSA2185-1 SAMN36716692-rid18891413.guided.28, whole genome shotgun sequence	4329..5603	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNIOM010000026.1 Salmonella enterica strain MPSPSA2185-1 SAMN36716692-rid18891413.denovo.31, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIOM010000027.1 Salmonella enterica strain MPSPSA2185-1 SAMN36716692-rid18891413.denovo.32, whole genome shotgun sequence	1150..1280		enterobacteriales	Col440I	91.23	114 / 114	ABNIOM010000042.1 Salmonella enterica strain MPSPSA2185-1 SAMN36716692-rid18891413.guided.33, whole genome shotgun sequence	3..116		enterobacteriales	IncHI2	100	327 / 327	ABNIOM010000017.1 Salmonella enterica strain MPSPSA2185-1 SAMN36716692-rid18891413.denovo.17, whole genome shotgun sequence	34238..34564		enterobacteriales	IncHI2A	99.52	630 / 630	ABNIOM010000017.1 Salmonella enterica strain MPSPSA2185-1 SAMN36716692-rid18891413.denovo.17, whole genome shotgun sequence	53102..53731																											avrA	ABNIOM010000003.1	93864..94733	99.54	870	0						
GCA_032348915.1_PDT001829747.1_genomic.fna	Salmonella_enterica	0.5228	60.243 KB	23	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIOL010000020.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323732 SAMN36716693-rid18891423.denovo.020, whole genome shotgun sequence	11353..11790	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNIOL010000143.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323732 SAMN36716693-rid18891423.guided.053, whole genome shotgun sequence	20585..21022	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNIOL010000111.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323732 SAMN36716693-rid18891423.denovo.114, whole genome shotgun sequence	557..687	enterobacteriales	Col(pHAD28)	90.27	113 / 131	ABNIOL010000113.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323732 SAMN36716693-rid18891423.denovo.116, whole genome shotgun sequence	1600..1712																																																avrA	ABNIOL010000008.1	94979..95848	99.54	870	0						
GCA_032348935.1_PDT001829741.1_genomic.fna	Salmonella_enterica	0.5217	49.71 KB	30	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCMY-2,blaCMY-2,fosA7,fosA7,floR,floR,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncC	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIOO010000008.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.denovo.008, whole genome shotgun sequence	16084..16521	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIOO010000115.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.denovo.117, whole genome shotgun sequence	1876..2712	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIOO010000115.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.denovo.117, whole genome shotgun sequence	1073..1876	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNIOO010000177.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.denovo.185, whole genome shotgun sequence	137..952	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aac(6')-Iaa	97.95	438/438	ABNIOO010000204.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.guided.123, whole genome shotgun sequence	8022..8459	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIOO010000206.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.guided.141, whole genome shotgun sequence	1907..2743	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIOO010000206.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.guided.141, whole genome shotgun sequence	1104..1907	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNIOO010000208.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.guided.182, whole genome shotgun sequence	129..944	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	blaCMY-2	100	1146/1146	ABNIOO010000015.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.denovo.015, whole genome shotgun sequence	883..2028	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNIOO010000203.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.guided.120, whole genome shotgun sequence	914..2059	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	fosA7	97.16	423/423	ABNIOO010000127.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.denovo.132, whole genome shotgun sequence	4820..5242	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNIOO010000205.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.guided.131, whole genome shotgun sequence	4817..5239	Fosfomycin	LAPJ01000014	floR	98.27	1214/1215	ABNIOO010000115.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.denovo.117, whole genome shotgun sequence	5848..7061	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNIOO010000207.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.guided.148, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNIOO010000115.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.denovo.117, whole genome shotgun sequence	197..1012	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIOO010000206.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.guided.141, whole genome shotgun sequence	228..1043	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNIOO010000115.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.denovo.117, whole genome shotgun sequence	3973..5247	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNIOO010000206.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.guided.141, whole genome shotgun sequence	4004..5278	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNIOO010000142.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.denovo.149, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	92.04	113 / 114	ABNIOO010000149.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.denovo.156, whole genome shotgun sequence	1334..1446		enterobacteriales	IncC	100	417 / 417	ABNIOO010000084.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323733 SAMN36716695-rid18890603.denovo.084, whole genome shotgun sequence	17493..17909																																									avrA	ABNIOO010000017.1	62183..63052	99.195	870	0						
GCA_032348955.1_PDT001829740.1_genomic.fna	Salmonella_enterica	0.5214	314.392 KB	6	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNIOP010000007.1 Salmonella enterica strain MPSPSA2185-2 SAMN36716688-rid18891393.denovo.07, whole genome shotgun sequence	213716..214153	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNIOP010000040.1 Salmonella enterica strain MPSPSA2185-2 SAMN36716688-rid18891393.guided.30, whole genome shotgun sequence	10373..10810	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIOP010000029.1 Salmonella enterica strain MPSPSA2185-2 SAMN36716688-rid18891393.denovo.33, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIOP010000041.1 Salmonella enterica strain MPSPSA2185-2 SAMN36716688-rid18891393.guided.32, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIOP010000029.1 Salmonella enterica strain MPSPSA2185-2 SAMN36716688-rid18891393.denovo.33, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIOP010000041.1 Salmonella enterica strain MPSPSA2185-2 SAMN36716688-rid18891393.guided.32, whole genome shotgun sequence	2044..2174																																																avrA	ABNIOP010000022.1	39421..40290	99.31	870	0						
GCA_032348975.1_PDT001829743.1_genomic.fna	Salmonella_enterica	0.5227	91.164 KB	17	aroC_5,dnaN_14,hemD_21,hisD_9,purE_6,sucA_12,thrA_17	49	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNION010000005.1 Salmonella enterica subsp. enterica serovar Saintpaul strain FSIS12323734 SAMN36716697-rid18890623.denovo.05, whole genome shotgun sequence	56304..56741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNION010000092.1 Salmonella enterica subsp. enterica serovar Saintpaul strain FSIS12323734 SAMN36716697-rid18890623.guided.60, whole genome shotgun sequence	20570..21007	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNION010000006.1	114651..115520	99.54	870	0						
GCA_032348995.1_PDT001829736.1_genomic.fna	Salmonella_enterica	0.5202	251.525 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pKPC-CAV1321	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNIOS010000010.1 Salmonella enterica strain W195-26-1 SAMN36716638-rid18890583.denovo.010, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNIOS010000114.1 Salmonella enterica strain W195-26-1 SAMN36716638-rid18890583.guided.025, whole genome shotgun sequence	8874..9311	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1321	94.61	594 / 596	ABNIOS010000053.1 Salmonella enterica strain W195-26-1 SAMN36716638-rid18890583.denovo.056, whole genome shotgun sequence	781..1374																																																						avrA	ABNIOS010000002.1	120682..121551	98.851	870	0						
GCA_032349015.1_PDT001829739.1_genomic.fna	Salmonella_enterica	0.5221	388.63 KB	4	aroC_157,dnaN_142,hemD_49,hisD_16,purE_40,sucA_35,thrA_3	505	4:l,v:1,7	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,floR,floR,qnrB19,qnrB19,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_157	dnaN	100	100	dnaN_142	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_3	4	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Bredeney		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNIOQ010000001.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.denovo.01, whole genome shotgun sequence	702082..702519	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIOQ010000016.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.denovo.16, whole genome shotgun sequence	50666..51502	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIOQ010000016.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.denovo.16, whole genome shotgun sequence	49863..50666	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNIOQ010000035.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.guided.22, whole genome shotgun sequence	16808..17644	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIOQ010000035.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.guided.22, whole genome shotgun sequence	16005..16808	Streptomycin	AF321551	aac(6')-Iaa	98.17	438/438	ABNIOQ010000037.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.guided.24, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	ABNIOQ010000016.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.denovo.16, whole genome shotgun sequence	54638..55851	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIOQ010000039.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNIOQ010000028.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.denovo.33, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIOQ010000040.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.guided.35, whole genome shotgun sequence	547..1191	Ciprofloxacin	EU432277	sul2	100	816/816	ABNIOQ010000016.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.denovo.16, whole genome shotgun sequence	48987..49802	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIOQ010000035.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.guided.22, whole genome shotgun sequence	15129..15944	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNIOQ010000016.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.denovo.16, whole genome shotgun sequence	52763..54037	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNIOQ010000035.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.guided.22, whole genome shotgun sequence	18905..20179	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNIOQ010000027.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.denovo.32, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIOQ010000028.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.denovo.33, whole genome shotgun sequence	1150..1280		enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNIOQ010000029.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.denovo.34, whole genome shotgun sequence	1479..1609		enterobacteriales	IncC	100	417 / 417	ABNIOQ010000016.1 Salmonella enterica strain MPSPSA2165-3 SAMN36716691-rid18891383.denovo.16, whole genome shotgun sequence	17611..18027																																													
GCA_032349035.1_PDT001829735.1_genomic.fna	Salmonella_enterica	0.523	263.482 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIOR010000001.1 Salmonella enterica strain MPSPSA2167 SAMN36716637-rid18891363.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIOR010000033.1 Salmonella enterica strain MPSPSA2167 SAMN36716637-rid18891363.guided.25, whole genome shotgun sequence	12411..12848	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIOR010000003.1	39349..40218	99.655	870	0						
GCA_032349075.1_PDT001829732.1_genomic.fna	Salmonella_enterica	0.5203	251.525 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pKPC-CAV1321	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNIOT010000010.1 Salmonella enterica strain W194-24-1 SAMN36716635-rid18890563.denovo.010, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNIOT010000131.1 Salmonella enterica strain W194-24-1 SAMN36716635-rid18890563.guided.070, whole genome shotgun sequence	1677..2114	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1321	94.61	594 / 596	ABNIOT010000042.1 Salmonella enterica strain W194-24-1 SAMN36716635-rid18890563.denovo.043, whole genome shotgun sequence	5285..5878																																																						avrA	ABNIOT010000002.1	120621..121490	98.851	870	0						
GCA_032349295.1_PDT001912984.1_genomic.fna	Salmonella_enterica	0.522	331.949 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIPB010000001.1 Salmonella enterica strain PNUSAS388451 SAMN37664105-rid19587463.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIPB010000030.1 Salmonella enterica strain PNUSAS388451 SAMN37664105-rid19587463.guided.21, whole genome shotgun sequence	10129..10566	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIPB010000006.1	147026..147895	98.966	870	0						
GCA_032349355.1_PDT001829731.1_genomic.fna	Salmonella_enterica	0.5203	251.525 KB	7	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pKPC-CAV1321	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNIPC010000012.1 Salmonella enterica strain W195-27-1 SAMN36716631-rid18890553.denovo.012, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNIPC010000122.1 Salmonella enterica strain W195-27-1 SAMN36716631-rid18890553.guided.038, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1321	94.61	594 / 596	ABNIPC010000043.1 Salmonella enterica strain W195-27-1 SAMN36716631-rid18890553.denovo.045, whole genome shotgun sequence	5285..5878																																																						avrA	ABNIPC010000001.1	39877..40746	98.851	870	0						
GCA_032349435.1_PDT001829728.1_genomic.fna	Salmonella_enterica	0.5193	366.669 KB	5	aroC_41,dnaN_42,hemD_43,hisD_733,purE_9,sucA_558,thrA_2	2881	8:d:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),ColpVC	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_733	purE	100	100	purE_9	sucA	100	100	sucA_558	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNIPE010000005.1 Salmonella enterica strain MPSPSA2166 SAMN36716634-rid18891323.denovo.05, whole genome shotgun sequence	221105..221542	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNIPE010000035.1 Salmonella enterica strain MPSPSA2166 SAMN36716634-rid18891323.guided.21, whole genome shotgun sequence	1654..2091	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIPE010000026.1 Salmonella enterica strain MPSPSA2166 SAMN36716634-rid18891323.denovo.29, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIPE010000038.1 Salmonella enterica strain MPSPSA2166 SAMN36716634-rid18891323.guided.31, whole genome shotgun sequence	687..1331	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNIPE010000024.1 Salmonella enterica strain MPSPSA2166 SAMN36716634-rid18891323.denovo.26, whole genome shotgun sequence	611..741	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIPE010000026.1 Salmonella enterica strain MPSPSA2166 SAMN36716634-rid18891323.denovo.29, whole genome shotgun sequence	1150..1280		enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIPE010000038.1 Salmonella enterica strain MPSPSA2166 SAMN36716634-rid18891323.guided.31, whole genome shotgun sequence	31..161		enterobacteriales	ColpVC	97.38	191 / 193	ABNIPE010000029.1 Salmonella enterica strain MPSPSA2166 SAMN36716634-rid18891323.denovo.33, whole genome shotgun sequence	1517..1707																																		avrA	ABNIPE010000002.1	93877..94746	99.425	870	0						
GCA_032349465.1_PDT001829729.1_genomic.fna	Salmonella_enterica	0.5226	386.137 KB	4	aroC_157,dnaN_142,hemD_49,hisD_16,purE_40,sucA_35,thrA_3	505	4:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_157	dnaN	100	100	dnaN_142	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_3	4	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Bredeney		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNIPD010000001.1 Salmonella enterica strain MPSPSA2171-1 SAMN36716629-rid18891333.denovo.01, whole genome shotgun sequence	693546..693983	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNIPD010000027.1 Salmonella enterica strain MPSPSA2171-1 SAMN36716629-rid18891333.guided.19, whole genome shotgun sequence	7905..8342	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032349595.1_PDT001829723.1_genomic.fna	Salmonella_enterica	0.5205	246.013 KB	8	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pKPC-CAV1321	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNIPK010000012.1 Salmonella enterica strain W196-18-1 SAMN36716593-rid18891283.denovo.012, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNIPK010000143.1 Salmonella enterica strain W196-18-1 SAMN36716593-rid18891283.guided.031, whole genome shotgun sequence	14108..14545	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1321	94.61	594 / 596	ABNIPK010000039.1 Salmonella enterica strain W196-18-1 SAMN36716593-rid18891283.denovo.042, whole genome shotgun sequence	7142..7735																																																						avrA	ABNIPK010000001.1	120621..121490	98.851	870	0						
GCA_032349645.1_PDT001829721.1_genomic.fna	Salmonella_enterica	0.523	203.486 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIPJ010000001.1 Salmonella enterica strain MPSPSA2168-2 SAMN36716589-rid18890523.denovo.01, whole genome shotgun sequence	134913..135350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIPJ010000042.1 Salmonella enterica strain MPSPSA2168-2 SAMN36716589-rid18890523.guided.28, whole genome shotgun sequence	30265..30702	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIPJ010000034.1 Salmonella enterica strain MPSPSA2168-2 SAMN36716589-rid18890523.denovo.38, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIPJ010000045.1 Salmonella enterica strain MPSPSA2168-2 SAMN36716589-rid18890523.guided.36, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIPJ010000034.1 Salmonella enterica strain MPSPSA2168-2 SAMN36716589-rid18890523.denovo.38, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIPJ010000045.1 Salmonella enterica strain MPSPSA2168-2 SAMN36716589-rid18890523.guided.36, whole genome shotgun sequence	2044..2174																																																avrA	ABNIPJ010000004.1	39349..40218	99.54	870	0						
GCA_032349655.1_PDT001829720.1_genomic.fna	Salmonella_enterica	0.5229	390.827 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIPL010000001.1 Salmonella enterica strain MPSPSA2168-1 SAMN36716588-rid18891273.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIPL010000040.1 Salmonella enterica strain MPSPSA2168-1 SAMN36716588-rid18891273.guided.31, whole genome shotgun sequence	2635..3072	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIPL010000030.1 Salmonella enterica strain MPSPSA2168-1 SAMN36716588-rid18891273.denovo.34, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIPL010000041.1 Salmonella enterica strain MPSPSA2168-1 SAMN36716588-rid18891273.guided.32, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIPL010000030.1 Salmonella enterica strain MPSPSA2168-1 SAMN36716588-rid18891273.denovo.34, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIPL010000041.1 Salmonella enterica strain MPSPSA2168-1 SAMN36716588-rid18891273.guided.32, whole genome shotgun sequence	2044..2174																																																avrA	ABNIPL010000003.1	39430..40299	99.54	870	0						
GCA_032349735.1_PDT001829717.1_genomic.fna	Salmonella_enterica	0.5211	648.166 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNIPN010000002.1 Salmonella enterica strain MPSPSA2169-2 SAMN36716592-rid18891243.denovo.02, whole genome shotgun sequence	643303..643740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNIPN010000024.1 Salmonella enterica strain MPSPSA2169-2 SAMN36716592-rid18891243.guided.19, whole genome shotgun sequence	2033..2470	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIPN010000003.1	496441..497309	99.425	870	0						
GCA_032349755.1_PDT001829716.1_genomic.fna	Salmonella_enterica	0.52	206.724 KB	8	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pKPC-CAV1321	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNIPO010000011.1 Salmonella enterica strain W185-21-1 SAMN36716590-rid18890513.denovo.011, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNIPO010000111.1 Salmonella enterica strain W185-21-1 SAMN36716590-rid18890513.guided.024, whole genome shotgun sequence	6967..7404	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1321	94.61	594 / 596	ABNIPO010000053.1 Salmonella enterica strain W185-21-1 SAMN36716590-rid18890513.denovo.055, whole genome shotgun sequence	3079..3672																																																						avrA	ABNIPO010000001.1	131918..132787	98.966	870	0						
GCA_032349775.1_PDT001829719.1_genomic.fna	Salmonella_enterica	0.5225	316.994 KB	6	aroC_84,dnaN_76,hemD_38,hisD_16,purE_12,sucA_13,thrA_4	226	6,14:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_76	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	6,14	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Carrau		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNIPM010000001.1 Salmonella enterica strain W196-15-1 SAMN36716585-rid18891263.denovo.01, whole genome shotgun sequence	257292..257729	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNIPM010000055.1 Salmonella enterica strain W196-15-1 SAMN36716585-rid18891263.guided.41, whole genome shotgun sequence	4846..5283	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIPM010000002.1	150303..151171	98.851	870	0						
GCA_032349815.1_PDT001829712.1_genomic.fna	Salmonella_enterica	0.5216	219.795 KB	7	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNIPP010000013.1 Salmonella enterica strain W197-25-1 SAMN36716548-rid18890503.denovo.13, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNIPP010000040.1 Salmonella enterica strain W197-25-1 SAMN36716548-rid18890503.guided.29, whole genome shotgun sequence	8538..8975	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIPP010000002.1	131918..132787	98.966	870	0						
GCA_032350025.1_PDT001829656.1_genomic.fna	Salmonella_enterica	0.5203	280.335 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pKPC-CAV1321	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNIPR010000012.1 Salmonella enterica strain W198-23-1 SAMN36716547-rid18890253.denovo.012, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNIPR010000102.1 Salmonella enterica strain W198-23-1 SAMN36716547-rid18890253.guided.031, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1321	94.61	594 / 596	ABNIPR010000039.1 Salmonella enterica strain W198-23-1 SAMN36716547-rid18890253.denovo.041, whole genome shotgun sequence	5141..5734																																																						avrA	ABNIPR010000001.1	117940..118809	98.966	870	0						
GCA_032350065.1_PDT001829652.1_genomic.fna	Salmonella_enterica	0.5202	227.704 KB	8	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pKPC-CAV1321	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNIPT010000013.1 Salmonella enterica strain W196-22-1 SAMN36716539-rid18890213.denovo.013, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNIPT010000148.1 Salmonella enterica strain W196-22-1 SAMN36716539-rid18890213.guided.033, whole genome shotgun sequence	9841..10278	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1321	94.61	594 / 596	ABNIPT010000045.1 Salmonella enterica strain W196-22-1 SAMN36716539-rid18890213.denovo.048, whole genome shotgun sequence	7142..7735																																																						avrA	ABNIPT010000001.1	120621..121490	98.851	870	0						
GCA_032350095.1_PDT001829650.1_genomic.fna	Salmonella_enterica	0.5176	258.492 KB	7	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,qnrB19,qnrB19	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col(pHAD28),IncHI2,IncHI2A	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIPS010000008.1 Salmonella enterica strain MPSPSA2170-2 SAMN36716540-rid18890193.denovo.08, whole genome shotgun sequence	152021..152458	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIPS010000053.1 Salmonella enterica strain MPSPSA2170-2 SAMN36716540-rid18890193.guided.32, whole genome shotgun sequence	12495..12932	Amikacin, Tobramycin	NC_003197	fosA7	96.22	423/423	ABNIPS010000002.1 Salmonella enterica strain MPSPSA2170-2 SAMN36716540-rid18890193.denovo.02, whole genome shotgun sequence	135926..136348	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	ABNIPS010000052.1 Salmonella enterica strain MPSPSA2170-2 SAMN36716540-rid18890193.guided.30, whole genome shotgun sequence	13935..14357	Fosfomycin	LAPJ01000014	qnrB19	100	645/645	ABNIPS010000037.1 Salmonella enterica strain MPSPSA2170-2 SAMN36716540-rid18890193.denovo.43, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIPS010000057.1 Salmonella enterica strain MPSPSA2170-2 SAMN36716540-rid18890193.guided.44, whole genome shotgun sequence	739..1383	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIPS010000037.1 Salmonella enterica strain MPSPSA2170-2 SAMN36716540-rid18890193.denovo.43, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNIPS010000038.1 Salmonella enterica strain MPSPSA2170-2 SAMN36716540-rid18890193.denovo.45, whole genome shotgun sequence	546..674		enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIPS010000057.1 Salmonella enterica strain MPSPSA2170-2 SAMN36716540-rid18890193.guided.44, whole genome shotgun sequence	83..213		enterobacteriales	IncHI2	100	327 / 327	ABNIPS010000016.1 Salmonella enterica strain MPSPSA2170-2 SAMN36716540-rid18890193.denovo.16, whole genome shotgun sequence	79144..79470		enterobacteriales	IncHI2A	100	630 / 630	ABNIPS010000016.1 Salmonella enterica strain MPSPSA2170-2 SAMN36716540-rid18890193.denovo.16, whole genome shotgun sequence	94336..94965																											avrA	ABNIPS010000006.1	39431..40300	99.195	870	0						
GCA_032350195.1_PDT001829644.1_genomic.fna	Salmonella_enterica	0.5202	465.946 KB	2	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNIPW010000001.1 Salmonella enterica strain MPSPSA2172-3 SAMN36716505-rid18890133.denovo.01, whole genome shotgun sequence	1315906..1316343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNIPW010000033.1 Salmonella enterica strain MPSPSA2172-3 SAMN36716505-rid18890133.guided.20, whole genome shotgun sequence	16450..16887	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIPW010000022.1 Salmonella enterica strain MPSPSA2172-3 SAMN36716505-rid18890133.denovo.26, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIPW010000035.1 Salmonella enterica strain MPSPSA2172-3 SAMN36716505-rid18890133.guided.25, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIPW010000022.1 Salmonella enterica strain MPSPSA2172-3 SAMN36716505-rid18890133.denovo.26, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIPW010000035.1 Salmonella enterica strain MPSPSA2172-3 SAMN36716505-rid18890133.guided.25, whole genome shotgun sequence	2044..2174																																																avrA	ABNIPW010000002.1	425550..426419	99.425	870	0						
GCA_032350205.1_PDT001829648.1_genomic.fna	Salmonella_enterica	0.5206	403.249 KB	5	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNIPU010000005.1 Salmonella enterica strain MPSPSA2172-1 SAMN36716514-rid18890173.denovo.05, whole genome shotgun sequence	165177..165614	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNIPU010000030.1 Salmonella enterica strain MPSPSA2172-1 SAMN36716514-rid18890173.guided.21, whole genome shotgun sequence	16450..16887	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIPU010000023.1 Salmonella enterica strain MPSPSA2172-1 SAMN36716514-rid18890173.denovo.27, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIPU010000033.1 Salmonella enterica strain MPSPSA2172-1 SAMN36716514-rid18890173.guided.26, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIPU010000023.1 Salmonella enterica strain MPSPSA2172-1 SAMN36716514-rid18890173.denovo.27, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIPU010000033.1 Salmonella enterica strain MPSPSA2172-1 SAMN36716514-rid18890173.guided.26, whole genome shotgun sequence	2044..2174																																																avrA	ABNIPU010000004.1	425508..426377	99.425	870	0						
GCA_032350275.1_PDT001829640.1_genomic.fna	Salmonella_enterica	0.5212	281.019 KB	7	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNIPX010000014.1 Salmonella enterica strain W197-27-1 SAMN36716509-rid18890093.denovo.14, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNIPX010000041.1 Salmonella enterica strain W197-27-1 SAMN36716509-rid18890093.guided.25, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIPX010000002.1	131918..132787	98.966	870	0						
GCA_032350295.1_PDT001829636.1_genomic.fna	Salmonella_enterica	0.5214	451.167 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA2b,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA2b,blaTEM-1A,blaTEM-1A,lnu(F),lnu(F),floR,floR,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIPY010000001.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.denovo.01, whole genome shotgun sequence	984224..984661	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIPY010000019.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.denovo.21, whole genome shotgun sequence	5288..6124	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNIPY010000019.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.denovo.21, whole genome shotgun sequence	4485..5288	Streptomycin	AF321551	aadA2b	99.87	780/780	ABNIPY010000022.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.denovo.28, whole genome shotgun sequence	760..1539	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.09	438/438	ABNIPY010000029.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.guided.19, whole genome shotgun sequence	24227..24664	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIPY010000031.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.guided.23, whole genome shotgun sequence	5329..6165	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNIPY010000031.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.guided.23, whole genome shotgun sequence	4526..5329	Streptomycin	AF321551	aadA2b	99.87	780/780	ABNIPY010000033.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.guided.26, whole genome shotgun sequence	801..1580	Spectinomycin, Streptomycin	D43625	blaTEM-1A	100	861/861	ABNIPY010000019.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.denovo.21, whole genome shotgun sequence	2587..3447	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNIPY010000031.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.guided.23, whole genome shotgun sequence	2628..3488	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	lnu(F)	100	759/822	ABNIPY010000022.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.denovo.28, whole genome shotgun sequence	1671..2429	Lincomycin	EU118119	lnu(F)	100	761/822	ABNIPY010000033.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.guided.26, whole genome shotgun sequence	1712..2472	Lincomycin	EU118119	floR	98.19	1214/1215	ABNIPY010000019.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.denovo.21, whole genome shotgun sequence	9260..10473	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIPY010000032.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.guided.25, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNIPY010000023.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.denovo.29, whole genome shotgun sequence	97..753	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNIPY010000034.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.guided.30, whole genome shotgun sequence	690..1346	Ciprofloxacin	AB187515	sul2	100	816/816	ABNIPY010000019.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.denovo.21, whole genome shotgun sequence	3609..4424	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIPY010000031.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.guided.23, whole genome shotgun sequence	3650..4465	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNIPY010000019.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.denovo.21, whole genome shotgun sequence	7385..8659	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNIPY010000031.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.guided.23, whole genome shotgun sequence	7426..8700	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.93	374 / 374	ABNIPY010000018.1 Salmonella enterica strain MPSPSA2173-1 SAMN36716284-rid18890053.denovo.20, whole genome shotgun sequence	4641..5014																																																						avrA	ABNIPY010000003.1	130895..131764	99.54	870	0						
GCA_032350415.1_PDT001829617.1_genomic.fna	Salmonella_enterica	0.521	337.924 KB	6	aroC_2,dnaN_59,hemD_23,hisD_64,purE_38,sucA_19,thrA_12	1499	8:r:1,5	11	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,floR,floR,qnrS4,qnrS4,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	0		1	IncY	aroC	100	100	aroC_2	dnaN	100	100	dnaN_59	hemD	100	100	hemD_23	hisD	100	100	hisD_64	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNIQC010000001.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.denovo.01, whole genome shotgun sequence	261367..261804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNIQC010000050.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.guided.16, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	ABNIQC010000034.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.denovo.38, whole genome shotgun sequence	317..1177	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNIQC010000034.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.denovo.38, whole genome shotgun sequence	317..1177	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNIQC010000034.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.denovo.38, whole genome shotgun sequence	317..1177	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNIQC010000034.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.denovo.38, whole genome shotgun sequence	317..1177	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNIQC010000034.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.denovo.38, whole genome shotgun sequence	317..1177	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	ABNIQC010000053.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.guided.37, whole genome shotgun sequence	357..1217	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNIQC010000053.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.guided.37, whole genome shotgun sequence	357..1217	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNIQC010000053.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.guided.37, whole genome shotgun sequence	357..1217	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNIQC010000053.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.guided.37, whole genome shotgun sequence	357..1217	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNIQC010000053.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.guided.37, whole genome shotgun sequence	357..1217	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.11	1214/1215	ABNIQC010000031.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.denovo.34, whole genome shotgun sequence	965..2178	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNIQC010000055.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.guided.42, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	qnrS4	100	657/657	ABNIQC010000038.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.denovo.46, whole genome shotgun sequence	737..1393	Ciprofloxacin	FJ418153	qnrS4	100	657/657	ABNIQC010000057.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.guided.45, whole genome shotgun sequence	594..1250	Ciprofloxacin	FJ418153	sul2	100	816/816	ABNIQC010000028.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.denovo.31, whole genome shotgun sequence	3486..4301	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIQC010000054.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.guided.39, whole genome shotgun sequence	3526..4341	Sulfamethoxazole	AY034138	tet(A)	99.92	1275/1275	ABNIQC010000031.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.denovo.34, whole genome shotgun sequence	2779..4053	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1275/1275	ABNIQC010000056.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.guided.43, whole genome shotgun sequence	1002..2276	Doxycycline, Tetracycline	AF534183	dfrA14	100	406/474	ABNIQC010000040.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.denovo.49, whole genome shotgun sequence	1..406	Trimethoprim	KF921535	dfrA14	100	409/474	ABNIQC010000058.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.guided.48, whole genome shotgun sequence	1201..1609	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncY	98.82	765 / 765	ABNIQC010000030.1 Salmonella enterica strain PNUSAS366645 SAMN36716204-rid18889863.denovo.33, whole genome shotgun sequence	3856..4620																																																						avrA	ABNIQC010000002.1	409792..410661	99.31	870	0						
GCA_032350435.1_PDT001829619.1_genomic.fna	Salmonella_enterica	0.5223	237.138 KB	8	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNIQA010000007.1 Salmonella enterica strain MPSPSA2175-1 SAMN36716205-rid18889883.denovo.07, whole genome shotgun sequence	68452..68889	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNIQA010000043.1 Salmonella enterica strain MPSPSA2175-1 SAMN36716205-rid18889883.guided.31, whole genome shotgun sequence	2712..3149	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIQA010000031.1 Salmonella enterica strain MPSPSA2175-1 SAMN36716205-rid18889883.denovo.35, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIQA010000044.1 Salmonella enterica strain MPSPSA2175-1 SAMN36716205-rid18889883.guided.34, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIQA010000031.1 Salmonella enterica strain MPSPSA2175-1 SAMN36716205-rid18889883.denovo.35, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIQA010000044.1 Salmonella enterica strain MPSPSA2175-1 SAMN36716205-rid18889883.guided.34, whole genome shotgun sequence	2044..2174																																																avrA	ABNIQA010000021.1	36962..37831	99.425	870	0						
GCA_032350455.1_PDT001829614.1_genomic.fna	Salmonella_enterica	0.5219	235.397 KB	7	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNIQE010000001.1 Salmonella enterica strain MPSPSA2174-1 SAMN36716213-rid18889833.denovo.01, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNIQE010000040.1 Salmonella enterica strain MPSPSA2174-1 SAMN36716213-rid18889833.guided.31, whole genome shotgun sequence	3236..3673	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIQE010000029.1 Salmonella enterica strain MPSPSA2174-1 SAMN36716213-rid18889833.denovo.33, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIQE010000041.1 Salmonella enterica strain MPSPSA2174-1 SAMN36716213-rid18889833.guided.32, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIQE010000029.1 Salmonella enterica strain MPSPSA2174-1 SAMN36716213-rid18889833.denovo.33, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIQE010000041.1 Salmonella enterica strain MPSPSA2174-1 SAMN36716213-rid18889833.guided.32, whole genome shotgun sequence	2044..2174																																																avrA	ABNIQE010000020.1	36961..37830	99.425	870	0						
GCA_032350475.1_PDT001829616.1_genomic.fna	Salmonella_enterica	0.521	306.373 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	13	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,floR,floR,qnrB19,qnrB19,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),Col440I,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNIQB010000012.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.12, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIQB010000017.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.17, whole genome shotgun sequence	66779..67615	Streptomycin	M28829	aph(3'')-Ib	100	529/804	ABNIQB010000017.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.17, whole genome shotgun sequence	68458..68986	Streptomycin	AF321551	aph(3'')-Ib	99.2957746478873	284/804	ABNIQB010000017.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.17, whole genome shotgun sequence	67615..67896	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNIQB010000047.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.guided.31, whole genome shotgun sequence	4150..4986	Streptomycin	M28829	aph(3'')-Ib	100	529/804	ABNIQB010000047.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.guided.31, whole genome shotgun sequence	5829..6357	Streptomycin	AF321551	aph(3'')-Ib	99.2957746478873	284/804	ABNIQB010000047.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.guided.31, whole genome shotgun sequence	4986..5267	Streptomycin	AF321551	aac(6')-Iaa	97.03	438/438	ABNIQB010000049.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.guided.33, whole genome shotgun sequence	5442..5879	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	ABNIQB010000019.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.19, whole genome shotgun sequence	5461..6321	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNIQB010000019.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.19, whole genome shotgun sequence	5461..6321	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNIQB010000019.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.19, whole genome shotgun sequence	5461..6321	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNIQB010000019.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.19, whole genome shotgun sequence	5461..6321	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNIQB010000019.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.19, whole genome shotgun sequence	5461..6321	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	ABNIQB010000046.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.guided.25, whole genome shotgun sequence	17307..18167	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNIQB010000046.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.guided.25, whole genome shotgun sequence	17307..18167	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNIQB010000046.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.guided.25, whole genome shotgun sequence	17307..18167	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNIQB010000046.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.guided.25, whole genome shotgun sequence	17307..18167	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNIQB010000046.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.guided.25, whole genome shotgun sequence	17307..18167	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNIQB010000017.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.17, whole genome shotgun sequence	64609..65822	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIQB010000047.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.guided.31, whole genome shotgun sequence	1980..3193	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNIQB010000032.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.37, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIQB010000050.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.guided.39, whole genome shotgun sequence	620..1264	Ciprofloxacin	EU432277	sul2	100	816/816	ABNIQB010000017.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.17, whole genome shotgun sequence	69047..69862	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIQB010000047.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.guided.31, whole genome shotgun sequence	6418..7233	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNIQB010000019.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.19, whole genome shotgun sequence	7250..8449	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNIQB010000046.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.guided.25, whole genome shotgun sequence	19096..20295	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNIQB010000017.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.17, whole genome shotgun sequence	67965..68438	Trimethoprim	AF393510	dfrA14	100	474/474	ABNIQB010000047.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.guided.31, whole genome shotgun sequence	5336..5809	Trimethoprim	AF393510																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNIQB010000031.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.36, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIQB010000032.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.37, whole genome shotgun sequence	1522..1652		enterobacteriales	Col440I	91.23	114 / 114	ABNIQB010000050.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.guided.39, whole genome shotgun sequence	3..116		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNIQB010000017.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.17, whole genome shotgun sequence	73708..73849		enterobacteriales	IncX1	98.94	377 / 377	ABNIQB010000019.1 Salmonella enterica strain W204-12-1 SAMN36716208-rid18889853.denovo.19, whole genome shotgun sequence	16086..16462																											avrA	ABNIQB010000001.1	122176..123045	98.966	870	0						
GCA_032350495.1_PDT001829615.1_genomic.fna	Salmonella_enterica	0.5221	306.668 KB	5	aroC_426,dnaN_399,hemD_68,hisD_21,purE_136,sucA_83,thrA_432	1604	16:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_426	dnaN	100	100	dnaN_399	hemD	100	100	hemD_68	hisD	100	100	hisD_21	purE	100	100	purE_136	sucA	100	100	sucA_83	thrA	100	100	thrA_432	16	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Saphra		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIQD010000005.1 Salmonella enterica strain W202-11-1 SAMN36716210-rid18889843.denovo.05, whole genome shotgun sequence	198118..198555	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIQD010000040.1 Salmonella enterica strain W202-11-1 SAMN36716210-rid18889843.guided.16, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIQD010000002.1	131570..132439	99.195	870	0						
GCA_032350515.1_PDT001829599.1_genomic.fna	Salmonella_enterica	0.5202	436.393 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIQH010000001.1 Salmonella enterica strain PNUSAS366651 SAMN36716179-rid18889683.denovo.01, whole genome shotgun sequence	628624..629061	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIQH010000029.1 Salmonella enterica strain PNUSAS366651 SAMN36716179-rid18889683.guided.21, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNIQH010000015.1 Salmonella enterica strain PNUSAS366651 SAMN36716179-rid18889683.denovo.15, whole genome shotgun sequence	34944..35477	enterobacteriales	IncX1	98.66	374 / 374	ABNIQH010000018.1 Salmonella enterica strain PNUSAS366651 SAMN36716179-rid18889683.denovo.19, whole genome shotgun sequence	6956..7329																																																avrA	ABNIQH010000012.1	93870..94740	99.196	871	0						
GCA_032350535.1_PDT001829602.1_genomic.fna	Salmonella_enterica	0.5202	696.648 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIQF010000001.1 Salmonella enterica strain PNUSAS366655 SAMN36716187-rid18889713.denovo.01, whole genome shotgun sequence	239149..239586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIQF010000027.1 Salmonella enterica strain PNUSAS366655 SAMN36716187-rid18889713.guided.15, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIQF010000018.1 Salmonella enterica strain PNUSAS366655 SAMN36716187-rid18889713.denovo.20, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNIQF010000019.1 Salmonella enterica strain PNUSAS366655 SAMN36716187-rid18889713.denovo.21, whole genome shotgun sequence	3413..3674		enterobacteriales	IncX1	99.47	377 / 377	ABNIQF010000014.1 Salmonella enterica strain PNUSAS366655 SAMN36716187-rid18889713.denovo.16, whole genome shotgun sequence	35224..35600																																									avrA	ABNIQF010000002.1	553615..554484	99.54	870	0						
GCA_032350555.1_PDT001829598.1_genomic.fna	Salmonella_enterica	0.5202	129.253 KB	11	aroC_110,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2711	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_110	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNIQG010000001.1 Salmonella enterica strain PNUSAS366656 SAMN36716178-rid18889673.denovo.01, whole genome shotgun sequence	42641..43078	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNIQG010000063.1 Salmonella enterica strain PNUSAS366656 SAMN36716178-rid18889673.guided.45, whole genome shotgun sequence	2693..3130	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNIQG010000039.1 Salmonella enterica strain PNUSAS366656 SAMN36716178-rid18889673.denovo.39, whole genome shotgun sequence	3303..3945																																																																	
GCA_032350575.1_PDT001829594.1_genomic.fna	Salmonella_enterica	0.5213	229.313 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIQI010000001.1 Salmonella enterica strain PNUSAS366648 SAMN36716167-rid18889633.denovo.01, whole genome shotgun sequence	232216..232653	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIQI010000040.1 Salmonella enterica strain PNUSAS366648 SAMN36716167-rid18889633.guided.24, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNIQI010000005.1	95312..96180	99.77	870	0						
GCA_032350595.1_PDT001829593.1_genomic.fna	Salmonella_enterica	0.5209	508.533 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI(Gamma)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIQJ010000001.1 Salmonella enterica strain PNUSAS366027 SAMN36716160-rid18889623.denovo.01, whole genome shotgun sequence	644043..644480	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIQJ010000020.1 Salmonella enterica strain PNUSAS366027 SAMN36716160-rid18889623.guided.15, whole genome shotgun sequence	12350..12787	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI(Gamma)	100	137 / 141	ABNIQJ010000010.1 Salmonella enterica strain PNUSAS366027 SAMN36716160-rid18889623.denovo.10, whole genome shotgun sequence	72654..72790																																																																	
GCA_032350615.1_PDT001829591.1_genomic.fna	Salmonella_enterica	0.5212	366.533 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIQL010000001.1 Salmonella enterica strain PNUSAS366658 SAMN36716166-rid18889603.denovo.01, whole genome shotgun sequence	475472..475909	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIQL010000036.1 Salmonella enterica strain PNUSAS366658 SAMN36716166-rid18889603.guided.24, whole genome shotgun sequence	3277..3714	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIQL010000010.1	122091..122959	99.195	870	0						
GCA_032350655.1_PDT001829592.1_genomic.fna	Salmonella_enterica	0.523	386.231 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIQK010000001.1 Salmonella enterica strain PNUSAS366024 SAMN36716161-rid18889613.denovo.01, whole genome shotgun sequence	828133..828570	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIQK010000039.1 Salmonella enterica strain PNUSAS366024 SAMN36716161-rid18889613.guided.25, whole genome shotgun sequence	1099..1536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIQK010000005.1	93999..94868	98.966	870	0						
GCA_032350675.1_PDT001829584.1_genomic.fna	Salmonella_enterica	0.5221	316.628 KB	5	aroC_5,dnaN_14,hemD_21,hisD_9,purE_6,sucA_12,thrA_17	49	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIQP010000001.1 Salmonella enterica strain PNUSAS366650 SAMN36716170-rid18889533.denovo.01, whole genome shotgun sequence	638920..639357	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIQP010000034.1 Salmonella enterica strain PNUSAS366650 SAMN36716170-rid18889533.guided.20, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNIQP010000003.1	140362..141231	99.54	870	0						
GCA_032350695.1_PDT001829585.1_genomic.fna	Salmonella_enterica	0.521	436.417 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIQM010000001.1 Salmonella enterica strain PNUSAS366017 SAMN36716158-rid18889543.denovo.01, whole genome shotgun sequence	477449..477886	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIQM010000041.1 Salmonella enterica strain PNUSAS366017 SAMN36716158-rid18889543.guided.19, whole genome shotgun sequence	7021..7458	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIQM010000002.1	504322..505192	99.196	871	0						
GCA_032350735.1_PDT001913120.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIQQ010000001.1 Salmonella enterica strain PNUSAS388248 SAMN37666047-rid19588483.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIQQ010000024.1 Salmonella enterica strain PNUSAS388248 SAMN37666047-rid19588483.guided.15, whole genome shotgun sequence	14206..14643	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIQQ010000012.1 Salmonella enterica strain PNUSAS388248 SAMN37666047-rid19588483.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNIQQ010000016.1 Salmonella enterica strain PNUSAS388248 SAMN37666047-rid19588483.denovo.19, whole genome shotgun sequence	3422..3683																																																avrA	ABNIQQ010000002.1	553636..554505	99.54	870	0						
GCA_032350755.1_PDT001913119.1_genomic.fna	Salmonella_enterica	0.5209	681.024 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNIQR010000001.1 Salmonella enterica strain PNUSAS388241 SAMN37666043-rid19588993.denovo.01, whole genome shotgun sequence	443798..444235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNIQR010000023.1 Salmonella enterica strain PNUSAS388241 SAMN37666043-rid19588993.guided.15, whole genome shotgun sequence	17805..18242	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIQR010000003.1	496996..497864	99.425	870	0						
GCA_032350775.1_PDT001913116.1_genomic.fna	Salmonella_enterica	0.5215	396.727 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNIQT010000001.1 Salmonella enterica strain PNUSAS388252 SAMN37666051-rid19588453.denovo.01, whole genome shotgun sequence	867009..867446	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNIQT010000025.1 Salmonella enterica strain PNUSAS388252 SAMN37666051-rid19588453.guided.18, whole genome shotgun sequence	1306..1743	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIQT010000007.1	129172..130041	99.77	870	0						
GCA_032350795.1_PDT001913118.1_genomic.fna	Salmonella_enterica	0.521	477.912 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIQS010000001.1 Salmonella enterica strain PNUSAS388237 SAMN37666045-rid19588473.denovo.01, whole genome shotgun sequence	774415..774852	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIQS010000029.1 Salmonella enterica strain PNUSAS388237 SAMN37666045-rid19588473.guided.19, whole genome shotgun sequence	6087..6524	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIQS010000013.1 Salmonella enterica strain PNUSAS388237 SAMN37666045-rid19588473.denovo.13, whole genome shotgun sequence	40538..41180	enterobacteriales	IncFII(S)	100	262 / 262	ABNIQS010000017.1 Salmonella enterica strain PNUSAS388237 SAMN37666045-rid19588473.denovo.20, whole genome shotgun sequence	3404..3665																																																avrA	ABNIQS010000002.1	174836..175705	99.54	870	0						
GCA_032350815.1_PDT001913113.1_genomic.fna	Salmonella_enterica	0.5223	298.951 KB	5	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIQU010000001.1 Salmonella enterica strain PNUSAS388260 SAMN37666042-rid19588433.denovo.01, whole genome shotgun sequence	170226..170663	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIQU010000033.1 Salmonella enterica strain PNUSAS388260 SAMN37666042-rid19588433.guided.26, whole genome shotgun sequence	4266..4703	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032350835.1_PDT001913108.1_genomic.fna	Salmonella_enterica	0.521	302.035 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIQV010000001.1 Salmonella enterica strain PNUSAS388257 SAMN37666027-rid19588393.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIQV010000045.1 Salmonella enterica strain PNUSAS388257 SAMN37666027-rid19588393.guided.25, whole genome shotgun sequence	19532..19969	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNIQV010000003.1	208058..208926	99.77	870	0						
GCA_032350855.1_PDT001913107.1_genomic.fna	Salmonella_enterica	0.5213	555.927 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNIQW010000001.1 Salmonella enterica strain PNUSAS388236 SAMN37666026-rid19588383.denovo.01, whole genome shotgun sequence	867009..867446	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNIQW010000024.1 Salmonella enterica strain PNUSAS388236 SAMN37666026-rid19588383.guided.17, whole genome shotgun sequence	4349..4786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIQW010000002.1	563628..564497	99.77	870	0						
GCA_032350875.1_PDT001913103.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIQY010000001.1 Salmonella enterica strain PNUSAS388249 SAMN37666038-rid19588353.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIQY010000024.1 Salmonella enterica strain PNUSAS388249 SAMN37666038-rid19588353.guided.14, whole genome shotgun sequence	16644..17081	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIQY010000012.1 Salmonella enterica strain PNUSAS388249 SAMN37666038-rid19588353.denovo.13, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNIQY010000016.1 Salmonella enterica strain PNUSAS388249 SAMN37666038-rid19588353.denovo.19, whole genome shotgun sequence	3436..3697																																																avrA	ABNIQY010000002.1	553636..554505	99.54	870	0						
GCA_032350895.1_PDT001913104.1_genomic.fna	Salmonella_enterica	0.5208	158.376 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNIQX010000010.1 Salmonella enterica strain PNUSAS388240 SAMN37666032-rid19588963.denovo.10, whole genome shotgun sequence	29911..30345	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNIQX010000058.1 Salmonella enterica strain PNUSAS388240 SAMN37666032-rid19588963.guided.41, whole genome shotgun sequence	5545..5979	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032350915.1_PDT001913098.1_genomic.fna	Salmonella_enterica	0.5213	489.659 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIQZ010000001.1 Salmonella enterica strain PNUSAS388256 SAMN37666033-rid19588313.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIQZ010000024.1 Salmonella enterica strain PNUSAS388256 SAMN37666033-rid19588313.guided.20, whole genome shotgun sequence	2866..3303	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIQZ010000012.1 Salmonella enterica strain PNUSAS388256 SAMN37666033-rid19588313.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNIQZ010000015.1 Salmonella enterica strain PNUSAS388256 SAMN37666033-rid19588313.denovo.17, whole genome shotgun sequence	3390..3651																																																avrA	ABNIQZ010000002.1	553045..553914	99.54	870	0						
GCA_032350935.1_PDT001913097.1_genomic.fna	Salmonella_enterica	0.5203	489.743 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	7	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIRA010000001.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.denovo.01, whole genome shotgun sequence	815093..815530	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIRA010000027.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.guided.18, whole genome shotgun sequence	4119..4556	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	ABNIRA010000013.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.denovo.13, whole genome shotgun sequence	5461..6321	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNIRA010000013.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.denovo.13, whole genome shotgun sequence	5461..6321	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNIRA010000013.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.denovo.13, whole genome shotgun sequence	5461..6321	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNIRA010000013.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.denovo.13, whole genome shotgun sequence	5461..6321	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNIRA010000013.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.denovo.13, whole genome shotgun sequence	5461..6321	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	ABNIRA010000028.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.guided.19, whole genome shotgun sequence	615..1475	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNIRA010000028.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.guided.19, whole genome shotgun sequence	615..1475	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNIRA010000028.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.guided.19, whole genome shotgun sequence	615..1475	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNIRA010000028.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.guided.19, whole genome shotgun sequence	615..1475	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNIRA010000028.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.guided.19, whole genome shotgun sequence	615..1475	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	99.92	1200/1200	ABNIRA010000013.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.denovo.13, whole genome shotgun sequence	7250..8449	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNIRA010000028.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.guided.19, whole genome shotgun sequence	2404..3603	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIRA010000012.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNIRA010000016.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.denovo.20, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.94	377 / 377	ABNIRA010000013.1 Salmonella enterica strain PNUSAS388238 SAMN37666031-rid19588303.denovo.13, whole genome shotgun sequence	16086..16462																																									avrA	ABNIRA010000002.1	553193..554062	99.54	870	0						
GCA_032350955.1_PDT001913065.1_genomic.fna	Salmonella_enterica	0.5211	591.637 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNIRB010000001.1 Salmonella enterica strain PNUSAS388649 SAMN37664592-rid19588083.denovo.01, whole genome shotgun sequence	398391..398828	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNIRB010000028.1 Salmonella enterica strain PNUSAS388649 SAMN37664592-rid19588083.guided.15, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.39	446 / 445	ABNIRB010000011.1 Salmonella enterica strain PNUSAS388649 SAMN37664592-rid19588083.denovo.12, whole genome shotgun sequence	39786..40230	enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABNIRB010000011.1 Salmonella enterica strain PNUSAS388649 SAMN37664592-rid19588083.denovo.12, whole genome shotgun sequence	40491..40703																																																avrA	ABNIRB010000003.1	496410..497278	99.425	870	0						
GCA_032350975.1_PDT001913061.1_genomic.fna	Salmonella_enterica	0.5222	333.002 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIRC010000001.1 Salmonella enterica strain PNUSAS388595 SAMN37664562-rid19588063.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIRC010000035.1 Salmonella enterica strain PNUSAS388595 SAMN37664562-rid19588063.guided.26, whole genome shotgun sequence	957..1394	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRC010000002.1	149828..150697	99.655	870	0						
GCA_032350995.1_PDT001913055.1_genomic.fna	Salmonella_enterica	0.5211	436.56 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIRD010000001.1 Salmonella enterica strain PNUSAS388586 SAMN37664574-rid19588023.denovo.01, whole genome shotgun sequence	498125..498562	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIRD010000025.1 Salmonella enterica strain PNUSAS388586 SAMN37664574-rid19588023.guided.14, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRD010000003.1	140447..141316	99.425	870	0						
GCA_032351015.1_PDT001913053.1_genomic.fna	Salmonella_enterica	0.5214	737.356 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIRE010000001.1 Salmonella enterica strain PNUSAS388589 SAMN37664565-rid19588013.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIRE010000018.1 Salmonella enterica strain PNUSAS388589 SAMN37664565-rid19588013.guided.13, whole genome shotgun sequence	12622..13059	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNIRE010000009.1 Salmonella enterica strain PNUSAS388589 SAMN37664565-rid19588013.denovo.09, whole genome shotgun sequence	20417..20950																																																						avrA	ABNIRE010000002.1	561740..562610	99.656	871	0						
GCA_032351035.1_PDT001913050.1_genomic.fna	Salmonella_enterica	0.5205	660.381 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNIRF010000001.1 Salmonella enterica strain PNUSAS388584 SAMN37664571-rid19587993.denovo.01, whole genome shotgun sequence	398384..398821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNIRF010000022.1 Salmonella enterica strain PNUSAS388584 SAMN37664571-rid19587993.guided.12, whole genome shotgun sequence	36105..36542	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRF010000003.1	496325..497193	99.425	870	0						
GCA_032351075.1_PDT001912988.1_genomic.fna	Salmonella_enterica	0.5219	366.828 KB	4	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNIRK010000001.1 Salmonella enterica strain PNUSAS388376 SAMN37664100-rid19587493.denovo.01, whole genome shotgun sequence	840518..840955	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNIRK010000050.1 Salmonella enterica strain PNUSAS388376 SAMN37664100-rid19587493.guided.19, whole genome shotgun sequence	24921..25358	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRK010000003.1	100125..100994	99.54	870	0						
GCA_032351095.1_PDT001913048.1_genomic.fna	Salmonella_enterica	0.5222	767.476 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIRH010000001.1 Salmonella enterica strain PNUSAS388587 SAMN37664564-rid19587973.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIRH010000017.1 Salmonella enterica strain PNUSAS388587 SAMN37664564-rid19587973.guided.13, whole genome shotgun sequence	16879..17316	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRH010000002.1	562159..563029	99.656	871	0						
GCA_032351115.1_PDT001913034.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIRI010000001.1 Salmonella enterica strain PNUSAS388601 SAMN37664327-rid19587863.denovo.01, whole genome shotgun sequence	283975..284412	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIRI010000028.1 Salmonella enterica strain PNUSAS388601 SAMN37664327-rid19587863.guided.18, whole genome shotgun sequence	17712..18149	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNIRI010000022.1 Salmonella enterica strain PNUSAS388601 SAMN37664327-rid19587863.denovo.25, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIRI010000015.1 Salmonella enterica strain PNUSAS388601 SAMN37664327-rid19587863.denovo.15, whole genome shotgun sequence	49285..49927		enterobacteriales	IncFII(S)	100	262 / 262	ABNIRI010000015.1 Salmonella enterica strain PNUSAS388601 SAMN37664327-rid19587863.denovo.15, whole genome shotgun sequence	5032..5293																																									avrA	ABNIRI010000002.1	553432..554301	99.54	870	0						
GCA_032351135.1_PDT001913019.1_genomic.fna	Salmonella_enterica	0.5214	278.671 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	0		1	Col8282	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIRJ010000001.1 Salmonella enterica strain PNUSAS388515 SAMN37664294-rid19587743.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIRJ010000032.1 Salmonella enterica strain PNUSAS388515 SAMN37664294-rid19587743.denovo.36, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIRJ010000032.1 Salmonella enterica strain PNUSAS388515 SAMN37664294-rid19587743.denovo.36, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNIRJ010000056.1 Salmonella enterica strain PNUSAS388515 SAMN37664294-rid19587743.guided.29, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIRJ010000058.1 Salmonella enterica strain PNUSAS388515 SAMN37664294-rid19587743.guided.35, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIRJ010000058.1 Salmonella enterica strain PNUSAS388515 SAMN37664294-rid19587743.guided.35, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNIRJ010000039.1 Salmonella enterica strain PNUSAS388515 SAMN37664294-rid19587743.denovo.44, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNIRJ010000059.1 Salmonella enterica strain PNUSAS388515 SAMN37664294-rid19587743.guided.43, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNIRJ010000032.1 Salmonella enterica strain PNUSAS388515 SAMN37664294-rid19587743.denovo.36, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNIRJ010000058.1 Salmonella enterica strain PNUSAS388515 SAMN37664294-rid19587743.guided.35, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	Col8282	90.1	202 / 207	ABNIRJ010000033.1 Salmonella enterica strain PNUSAS388515 SAMN37664294-rid19587743.denovo.37, whole genome shotgun sequence	191..392																																																						avrA	ABNIRJ010000002.1	540741..541610	99.885	870	0						
GCA_032351155.1_PDT001913041.1_genomic.fna	Salmonella_enterica	0.5215	430.295 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIRG010000001.1 Salmonella enterica strain PNUSAS388598 SAMN37664560-rid19587923.denovo.01, whole genome shotgun sequence	477376..477813	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIRG010000024.1 Salmonella enterica strain PNUSAS388598 SAMN37664560-rid19587923.guided.12, whole genome shotgun sequence	35495..35932	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRG010000010.1	121136..122004	99.195	870	0						
GCA_032351175.1_PDT001912978.1_genomic.fna	Salmonella_enterica	0.5218	322.927 KB	6	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIRN010000002.1 Salmonella enterica strain PNUSAS388353 SAMN37664111-rid19587413.denovo.02, whole genome shotgun sequence	183728..184165	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNIRN010000032.1 Salmonella enterica strain PNUSAS388353 SAMN37664111-rid19587413.guided.27, whole genome shotgun sequence	3560..3997	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNIRN010000028.1 Salmonella enterica strain PNUSAS388353 SAMN37664111-rid19587413.denovo.30, whole genome shotgun sequence	574..704																																																						avrA	ABNIRN010000006.1	149711..150581	99.426	871	0						
GCA_032351195.1_PDT001912985.1_genomic.fna	Salmonella_enterica	0.5209	407.356 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIRM010000001.1 Salmonella enterica strain PNUSAS388557 SAMN37664143-rid19587473.denovo.01, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIRM010000041.1 Salmonella enterica strain PNUSAS388557 SAMN37664143-rid19587473.guided.27, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRM010000012.1	98922..99790	99.195	870	0						
GCA_032351215.1_PDT001912980.1_genomic.fna	Salmonella_enterica	0.5219	395.234 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNIRL010000001.1 Salmonella enterica strain PNUSAS388454 SAMN37664108-rid19587433.denovo.01, whole genome shotgun sequence	838616..839053	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNIRL010000023.1 Salmonella enterica strain PNUSAS388454 SAMN37664108-rid19587433.guided.17, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRL010000006.1	154752..155621	98.851	870	0						
GCA_032351235.1_PDT001912974.1_genomic.fna	Salmonella_enterica	0.5214	258.942 KB	6	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNIRO010000004.1 Salmonella enterica strain PNUSAS388555 SAMN37664145-rid19587383.denovo.04, whole genome shotgun sequence	255137..255574	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNIRO010000036.1 Salmonella enterica strain PNUSAS388555 SAMN37664145-rid19587383.guided.21, whole genome shotgun sequence	21745..22182	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRO010000008.1	39349..40217	99.425	870	0						
GCA_032351255.1_PDT001912973.1_genomic.fna	Salmonella_enterica	0.5229	263.61 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIRP010000001.1 Salmonella enterica strain PNUSAS388375 SAMN37664099-rid19587373.denovo.01, whole genome shotgun sequence	512987..513424	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIRP010000040.1 Salmonella enterica strain PNUSAS388375 SAMN37664099-rid19587373.guided.23, whole genome shotgun sequence	36080..36517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRP010000001.1	950169..951038	99.655	870	0						
GCA_032351275.1_PDT001829575.1_genomic.fna	Salmonella_enterica	0.5204	269.465 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIRQ010000001.1 Salmonella enterica strain PNUSAS366014 SAMN36716155-rid18889443.denovo.01, whole genome shotgun sequence	139976..140413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIRQ010000055.1 Salmonella enterica strain PNUSAS366014 SAMN36716155-rid18889443.guided.43, whole genome shotgun sequence	363..800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNIRQ010000016.1 Salmonella enterica strain PNUSAS366014 SAMN36716155-rid18889443.denovo.16, whole genome shotgun sequence	48449..49091	enterobacteriales	IncFII(S)	100	262 / 262	ABNIRQ010000016.1 Salmonella enterica strain PNUSAS366014 SAMN36716155-rid18889443.denovo.16, whole genome shotgun sequence	64176..64437		enterobacteriales	IncFII(p96A)	100	534 / 534	ABNIRQ010000021.1 Salmonella enterica strain PNUSAS366014 SAMN36716155-rid18889443.denovo.21, whole genome shotgun sequence	7157..7690																																									avrA	ABNIRQ010000007.1	95312..96181	99.885	870	0						
GCA_032351295.1_PDT001829570.1_genomic.fna	Salmonella_enterica	0.5206	405.327 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIRR010000001.1 Salmonella enterica strain PNUSAS366013 SAMN36716144-rid18889393.denovo.01, whole genome shotgun sequence	477447..477884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIRR010000052.1 Salmonella enterica strain PNUSAS366013 SAMN36716144-rid18889393.guided.17, whole genome shotgun sequence	29652..30089	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRR010000012.1	93876..94746	99.196	871	0						
GCA_032351315.1_PDT001829558.1_genomic.fna	Salmonella_enterica	0.5227	443.198 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIRT010000001.1 Salmonella enterica strain PNUSAS366018 SAMN36716125-rid18889273.denovo.01, whole genome shotgun sequence	838577..839014	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIRT010000031.1 Salmonella enterica strain PNUSAS366018 SAMN36716125-rid18889273.guided.17, whole genome shotgun sequence	9700..10137	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRT010000003.1	183141..184010	98.851	870	0						
GCA_032351335.1_PDT001829564.1_genomic.fna	Salmonella_enterica	0.5201	341.281 KB	6	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNIRS010000001.1 Salmonella enterica strain PNUSAS366033 SAMN36716119-rid18889333.denovo.01, whole genome shotgun sequence	469436..469873	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNIRS010000066.1 Salmonella enterica strain PNUSAS366033 SAMN36716119-rid18889333.guided.48, whole genome shotgun sequence	145..582	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNIRS010000016.1 Salmonella enterica strain PNUSAS366033 SAMN36716119-rid18889333.denovo.16, whole genome shotgun sequence	79053..79695	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNIRS010000026.1 Salmonella enterica strain PNUSAS366033 SAMN36716119-rid18889333.denovo.26, whole genome shotgun sequence	18874..19456																																																avrA	ABNIRS010000004.1	97471..98340	99.425	870	0						
GCA_032351355.1_PDT001829551.1_genomic.fna	Salmonella_enterica	0.5225	712.007 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIRV010000001.1 Salmonella enterica strain W230-24-1 SAMN36716104-rid18889203.denovo.01, whole genome shotgun sequence	862121..862558	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIRV010000021.1 Salmonella enterica strain W230-24-1 SAMN36716104-rid18889203.guided.14, whole genome shotgun sequence	10168..10605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRV010000003.1	560487..561357	99.656	871	0						
GCA_032351375.1_PDT001829556.1_genomic.fna	Salmonella_enterica	0.5208	413.118 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIRU010000002.1 Salmonella enterica strain PNUSAS366012 SAMN36716129-rid18889253.denovo.02, whole genome shotgun sequence	384045..384482	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIRU010000049.1 Salmonella enterica strain PNUSAS366012 SAMN36716129-rid18889253.guided.17, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRU010000012.1	94857..95727	99.196	871	0						
GCA_032351395.1_PDT001829548.1_genomic.fna	Salmonella_enterica	0.5226	259.81 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIRX010000001.1 Salmonella enterica strain MPSPSA2193-1 SAMN36716101-rid18889173.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIRX010000035.1 Salmonella enterica strain MPSPSA2193-1 SAMN36716101-rid18889173.guided.23, whole genome shotgun sequence	40028..40465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRX010000004.1	39526..40395	99.655	870	0						
GCA_032351415.1_PDT001829549.1_genomic.fna	Salmonella_enterica	0.5225	728.964 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIRW010000001.1 Salmonella enterica strain W230-21-1 SAMN36716103-rid18889183.denovo.01, whole genome shotgun sequence	645017..645454	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIRW010000018.1 Salmonella enterica strain W230-21-1 SAMN36716103-rid18889183.guided.13, whole genome shotgun sequence	2018..2455	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRW010000003.1	560493..561363	99.656	871	0						
GCA_032351435.1_PDT001829540.1_genomic.fna	Salmonella_enterica	0.5217	303.831 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNIRY010000013.1 Salmonella enterica strain W231-1-1 SAMN36715896-rid18889123.denovo.13, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNIRY010000032.1 Salmonella enterica strain W231-1-1 SAMN36715896-rid18889123.guided.23, whole genome shotgun sequence	1..438	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRY010000002.1	131918..132787	98.966	870	0						
GCA_032351455.1_PDT001829538.1_genomic.fna	Salmonella_enterica	0.5217	231.593 KB	7	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNIRZ010000001.1 Salmonella enterica strain W184-24-1 SAMN36715892-rid18888683.denovo.01, whole genome shotgun sequence	346957..347394	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNIRZ010000041.1 Salmonella enterica strain W184-24-1 SAMN36715892-rid18888683.guided.28, whole genome shotgun sequence	4018..4455	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIRZ010000003.1	150569..151438	99.54	870	0						
GCA_032351475.1_PDT001829537.1_genomic.fna	Salmonella_enterica	0.5219	496.516 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNISA010000001.1 Salmonella enterica strain W231-9-1 SAMN36715893-rid18889113.denovo.01, whole genome shotgun sequence	831966..832403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNISA010000032.1 Salmonella enterica strain W231-9-1 SAMN36715893-rid18889113.guided.15, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNISA010000002.1	28833..29702	98.966	870	0						
GCA_032351495.1_PDT001829534.1_genomic.fna	Salmonella_enterica	0.5234	205.442 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aadA1,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aadA1,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNISB010000001.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNISB010000015.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.denovo.15, whole genome shotgun sequence	58494..59330	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNISB010000015.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.denovo.15, whole genome shotgun sequence	57692..58494	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNISB010000015.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.denovo.15, whole genome shotgun sequence	57691..58494	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNISB010000015.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.denovo.15, whole genome shotgun sequence	57691..58494	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNISB010000015.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.denovo.15, whole genome shotgun sequence	57691..58494	Streptomycin	AF321550	aadA1	99.49	792/792	ABNISB010000015.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.denovo.15, whole genome shotgun sequence	72307..73098	Spectinomycin, Streptomycin	JX185132	aac(6')-Iaa	97.49	438/438	ABNISB010000034.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.guided.27, whole genome shotgun sequence	1663..2100	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNISB010000035.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.guided.28, whole genome shotgun sequence	2771..3607	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNISB010000035.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.guided.28, whole genome shotgun sequence	1969..2771	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNISB010000035.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.guided.28, whole genome shotgun sequence	1968..2771	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNISB010000035.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.guided.28, whole genome shotgun sequence	1968..2771	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNISB010000035.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.guided.28, whole genome shotgun sequence	1968..2771	Streptomycin	AF321550	aadA1	99.49	792/792	ABNISB010000036.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.guided.31, whole genome shotgun sequence	1186..1977	Spectinomycin, Streptomycin	JX185132	sul1	100	840/840	ABNISB010000015.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.denovo.15, whole genome shotgun sequence	73603..74442	Sulfamethoxazole	U12338	sul1	100	840/840	ABNISB010000036.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.guided.31, whole genome shotgun sequence	2482..3321	Sulfamethoxazole	U12338	tet(A)	99.92	1200/1200	ABNISB010000015.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.denovo.15, whole genome shotgun sequence	65023..66222	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNISB010000037.1 Salmonella enterica strain MPSPSA2165-2 SAMN36715885-rid18888663.guided.32, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNISB010000003.1	39452..40321	99.655	870	0						
GCA_032351515.1_PDT001829533.1_genomic.fna	Salmonella_enterica	0.522	313.972 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNISD010000001.1 Salmonella enterica strain W231-13-1 SAMN36715886-rid18888653.denovo.01, whole genome shotgun sequence	517829..518266	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNISD010000038.1 Salmonella enterica strain W231-13-1 SAMN36715886-rid18888653.guided.23, whole genome shotgun sequence	12663..13100	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNISD010000002.1	129887..130756	98.966	870	0						
GCA_032351535.1_PDT001829536.1_genomic.fna	Salmonella_enterica	0.5213	250.733 KB	5	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNISC010000001.1 Salmonella enterica strain W184-22-1 SAMN36715891-rid18888673.denovo.01, whole genome shotgun sequence	346957..347394	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNISC010000038.1 Salmonella enterica strain W184-22-1 SAMN36715891-rid18888673.guided.26, whole genome shotgun sequence	4426..4863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNISC010000006.1	94141..95010	99.54	870	0						
GCA_032351555.1_PDT001829531.1_genomic.fna	Salmonella_enterica	0.5201	251.525 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pKPC-CAV1321	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNISE010000011.1 Salmonella enterica strain W194-14-1 SAMN36715887-rid18888643.denovo.011, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNISE010000132.1 Salmonella enterica strain W194-14-1 SAMN36715887-rid18888643.guided.032, whole genome shotgun sequence	4163..4600	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1321	94.61	594 / 596	ABNISE010000042.1 Salmonella enterica strain W194-14-1 SAMN36715887-rid18888643.denovo.044, whole genome shotgun sequence	5285..5878																																																						avrA	ABNISE010000002.1	120621..121490	98.851	870	0						
GCA_032351575.1_PDT001829529.1_genomic.fna	Salmonella_enterica	0.5219	286.627 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNISF010000001.1 Salmonella enterica strain W232-5-1 SAMN36715883-rid18888633.denovo.01, whole genome shotgun sequence	831966..832403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNISF010000036.1 Salmonella enterica strain W232-5-1 SAMN36715883-rid18888633.guided.17, whole genome shotgun sequence	10168..10605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNISF010000003.1	28833..29702	98.966	870	0						
GCA_032351595.1_PDT001829524.1_genomic.fna	Salmonella_enterica	0.522	647.765 KB	2	aroC_16,dnaN_16,hemD_20,hisD_1044,purE_8,sucA_12,thrA_18	4856	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_1044	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNISH010000001.1 Salmonella enterica strain PNUSAS366748 SAMN36715846-rid18888603.denovo.01, whole genome shotgun sequence	442653..443090	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNISH010000024.1 Salmonella enterica strain PNUSAS366748 SAMN36715846-rid18888603.guided.12, whole genome shotgun sequence	14444..14881	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNISH010000002.1	510238..511104	98.966	870	0						
GCA_032351615.1_PDT001829528.1_genomic.fna	Salmonella_enterica	0.5186	221.873 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,blaTEM-1B,floR,floR,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNISG010000003.1 Salmonella enterica strain W187-21-1 SAMN36715880-rid18888623.denovo.03, whole genome shotgun sequence	89013..89450	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNISG010000055.1 Salmonella enterica strain W187-21-1 SAMN36715880-rid18888623.guided.38, whole genome shotgun sequence	1200..1637	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNISG010000039.1 Salmonella enterica strain W187-21-1 SAMN36715880-rid18888623.denovo.45, whole genome shotgun sequence	147..1007	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNISG010000057.1 Salmonella enterica strain W187-21-1 SAMN36715880-rid18888623.guided.43, whole genome shotgun sequence	1608..2468	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	99.88	861/861	ABNISG010000058.1 Salmonella enterica strain W187-21-1 SAMN36715880-rid18888623.guided.44, whole genome shotgun sequence	1608..2468	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNISG010000032.1 Salmonella enterica strain W187-21-1 SAMN36715880-rid18888623.denovo.34, whole genome shotgun sequence	2938..4151	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNISG010000056.1 Salmonella enterica strain W187-21-1 SAMN36715880-rid18888623.guided.41, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	tet(A)	100	1275/1275	ABNISG010000032.1 Salmonella enterica strain W187-21-1 SAMN36715880-rid18888623.denovo.34, whole genome shotgun sequence	1063..2337	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNISG010000059.1 Salmonella enterica strain W187-21-1 SAMN36715880-rid18888623.guided.46, whole genome shotgun sequence	1104..2378	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																									parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNISG010000004.1	93678..94547	99.77	870	0						
GCA_032351635.1_PDT001829516.1_genomic.fna	Salmonella_enterica	0.522	501.172 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(D),tet(D),dfrA14,dfrA14	1	parC_p.T57S	1	IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNISJ010000005.1 Salmonella enterica strain MPSPSA2163-1 SAMN36715843-rid18888533.denovo.05, whole genome shotgun sequence	220750..221187	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNISJ010000023.1 Salmonella enterica strain MPSPSA2163-1 SAMN36715843-rid18888533.denovo.26, whole genome shotgun sequence	5523..6353	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	ABNISJ010000023.1 Salmonella enterica strain MPSPSA2163-1 SAMN36715843-rid18888533.denovo.26, whole genome shotgun sequence	6359..7162	Streptomycin	AF321551	aac(6')-Iaa	99.54	438/438	ABNISJ010000036.1 Salmonella enterica strain MPSPSA2163-1 SAMN36715843-rid18888533.guided.23, whole genome shotgun sequence	9807..10244	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNISJ010000037.1 Salmonella enterica strain MPSPSA2163-1 SAMN36715843-rid18888533.guided.24, whole genome shotgun sequence	3213..4043	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	ABNISJ010000037.1 Salmonella enterica strain MPSPSA2163-1 SAMN36715843-rid18888533.guided.24, whole genome shotgun sequence	2404..3207	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNISJ010000023.1 Salmonella enterica strain MPSPSA2163-1 SAMN36715843-rid18888533.denovo.26, whole genome shotgun sequence	3942..4802	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNISJ010000037.1 Salmonella enterica strain MPSPSA2163-1 SAMN36715843-rid18888533.guided.24, whole genome shotgun sequence	4764..5624	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNISJ010000023.1 Salmonella enterica strain MPSPSA2163-1 SAMN36715843-rid18888533.denovo.26, whole genome shotgun sequence	7223..8038	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNISJ010000037.1 Salmonella enterica strain MPSPSA2163-1 SAMN36715843-rid18888533.guided.24, whole genome shotgun sequence	1528..2343	Sulfamethoxazole	AY034138	tet(D)	100	1185/1185	ABNISJ010000026.1 Salmonella enterica strain MPSPSA2163-1 SAMN36715843-rid18888533.denovo.30, whole genome shotgun sequence	1641..2825	Doxycycline, Tetracycline	AF467077	tet(D)	100	1185/1185	ABNISJ010000038.1 Salmonella enterica strain MPSPSA2163-1 SAMN36715843-rid18888533.guided.29, whole genome shotgun sequence	739..1923	Doxycycline, Tetracycline	AF467077	dfrA14	100	474/474	ABNISJ010000021.1 Salmonella enterica strain MPSPSA2163-1 SAMN36715843-rid18888533.denovo.21, whole genome shotgun sequence	18822..19295	Trimethoprim	KF921535	dfrA14	100	474/474	ABNISJ010000039.1 Salmonella enterica strain MPSPSA2163-1 SAMN36715843-rid18888533.guided.31, whole genome shotgun sequence	2350..2823	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncN	99.81	514 / 514	ABNISJ010000024.1 Salmonella enterica strain MPSPSA2163-1 SAMN36715843-rid18888533.denovo.27, whole genome shotgun sequence	230..743																																																						avrA	ABNISJ010000003.1	514773..515641	99.655	870	0						
GCA_032351655.1_PDT001829520.1_genomic.fna	Salmonella_enterica	0.5223	474.019 KB	3	aroC_16,dnaN_16,hemD_20,hisD_1044,purE_8,sucA_12,thrA_18	4856	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_1044	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNISI010000001.1 Salmonella enterica strain PNUSAS366747 SAMN36715845-rid18889053.denovo.01, whole genome shotgun sequence	657589..658026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNISI010000025.1 Salmonella enterica strain PNUSAS366747 SAMN36715845-rid18889053.guided.18, whole genome shotgun sequence	5256..5693	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNISI010000002.1	182060..182926	98.966	870	0						
GCA_032351675.1_PDT001829511.1_genomic.fna	Salmonella_enterica	0.5212	182.235 KB	8	aroC_84,dnaN_76,hemD_38,hisD_16,purE_12,sucA_13,thrA_4	226	6,14:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_76	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	6,14	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Carrau		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNISK010000003.1 Salmonella enterica strain W190-25-1 SAMN36715837-rid18888493.denovo.03, whole genome shotgun sequence	257231..257668	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNISK010000049.1 Salmonella enterica strain W190-25-1 SAMN36715837-rid18888493.guided.36, whole genome shotgun sequence	5271..5708	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNISK010000001.1	150124..150992	98.851	870	0						
GCA_032351695.1_PDT001829513.1_genomic.fna	Salmonella_enterica	0.5222	496.506 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNISL010000001.1 Salmonella enterica strain W232-7-1 SAMN36715841-rid18888513.denovo.01, whole genome shotgun sequence	831966..832403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNISL010000033.1 Salmonella enterica strain W232-7-1 SAMN36715841-rid18888513.guided.19, whole genome shotgun sequence	9207..9644	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNISL010000002.1	28833..29702	98.966	870	0						
GCA_032351715.1_PDT001913110.1_genomic.fna	Salmonella_enterica	0.5216	411.419 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNISN010000001.1 Salmonella enterica strain PNUSAS388251 SAMN37666039-rid19588403.denovo.01, whole genome shotgun sequence	835148..835585	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNISN010000027.1 Salmonella enterica strain PNUSAS388251 SAMN37666039-rid19588403.guided.19, whole genome shotgun sequence	2137..2574	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNISN010000003.1	130571..131440	99.77	870	0						
GCA_032351755.1_PDT001913105.1_genomic.fna	Salmonella_enterica	0.5211	509.596 KB	2	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNISO010000001.1 Salmonella enterica strain PNUSAS388261 SAMN37666023-rid19588363.denovo.01, whole genome shotgun sequence	648107..648544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNISO010000025.1 Salmonella enterica strain PNUSAS388261 SAMN37666023-rid19588363.guided.17, whole genome shotgun sequence	1694..2131	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNISO010000003.1	150036..150905	99.425	870	0						
GCA_032351775.1_PDT001913094.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNISP010000001.1 Salmonella enterica strain PNUSAS388259 SAMN37666021-rid19588943.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNISP010000025.1 Salmonella enterica strain PNUSAS388259 SAMN37666021-rid19588943.guided.17, whole genome shotgun sequence	13891..14328	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNISP010000012.1 Salmonella enterica strain PNUSAS388259 SAMN37666021-rid19588943.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNISP010000015.1 Salmonella enterica strain PNUSAS388259 SAMN37666021-rid19588943.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABNISP010000002.1	553636..554505	99.54	870	0						
GCA_032351795.1_PDT001913092.1_genomic.fna	Salmonella_enterica	0.5216	358.323 KB	5	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNISQ010000001.1 Salmonella enterica strain PNUSAS388246 SAMN37666028-rid19588263.denovo.01, whole genome shotgun sequence	482625..483062	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNISQ010000044.1 Salmonella enterica strain PNUSAS388246 SAMN37666028-rid19588263.guided.30, whole genome shotgun sequence	5801..6238	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNISQ010000014.1 Salmonella enterica strain PNUSAS388246 SAMN37666028-rid19588263.denovo.14, whole genome shotgun sequence	29596..30238	enterobacteriales	IncFII(S)	100	262 / 262	ABNISQ010000014.1 Salmonella enterica strain PNUSAS388246 SAMN37666028-rid19588263.denovo.14, whole genome shotgun sequence	45323..45584																																																avrA	ABNISQ010000005.1	174633..175502	99.885	870	0						
GCA_032351855.1_PDT001913078.1_genomic.fna	Salmonella_enterica	0.5202	310.786 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),IncR	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIST010000001.1 Salmonella enterica strain PNUSAS388660 SAMN37665835-rid19588163.denovo.01, whole genome shotgun sequence	523191..523628	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIST010000048.1 Salmonella enterica strain PNUSAS388660 SAMN37665835-rid19588163.guided.29, whole genome shotgun sequence	2114..2551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNIST010000031.1 Salmonella enterica strain PNUSAS388660 SAMN37665835-rid19588163.denovo.34, whole genome shotgun sequence	2165..2295	enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNIST010000035.1 Salmonella enterica strain PNUSAS388660 SAMN37665835-rid19588163.denovo.38, whole genome shotgun sequence	547..675		enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNIST010000036.1 Salmonella enterica strain PNUSAS388660 SAMN37665835-rid19588163.denovo.39, whole genome shotgun sequence	1517..1647		enterobacteriales	IncR	100	251 / 251	ABNIST010000021.1 Salmonella enterica strain PNUSAS388660 SAMN37665835-rid19588163.denovo.22, whole genome shotgun sequence	5014..5264																																		avrA	ABNIST010000003.1	145724..146593	98.966	870	0						
GCA_032351875.1_PDT001913075.1_genomic.fna	Salmonella_enterica	0.5216	188.669 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNISU010000005.1 Salmonella enterica strain PNUSAS388642 SAMN37664601-rid19588143.denovo.05, whole genome shotgun sequence	174999..175436	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNISU010000051.1 Salmonella enterica strain PNUSAS388642 SAMN37664601-rid19588143.guided.32, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032351895.1_PDT001913080.1_genomic.fna	Salmonella_enterica	0.521	162.685 KB	10	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNISR010000001.1 Salmonella enterica strain PNUSAS388663 SAMN37665832-rid19588173.denovo.01, whole genome shotgun sequence	471451..471888	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNISR010000063.1 Salmonella enterica strain PNUSAS388663 SAMN37665832-rid19588173.guided.39, whole genome shotgun sequence	14209..14646	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNISR010000009.1	140470..141338	99.195	870	0						
GCA_032351915.1_PDT001913074.1_genomic.fna	Salmonella_enterica	0.5214	278.339 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(B),tet(B)	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNISV010000001.1 Salmonella enterica strain PNUSAS388643 SAMN37664599-rid19588883.denovo.01, whole genome shotgun sequence	194735..195172	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNISV010000059.1 Salmonella enterica strain PNUSAS388643 SAMN37664599-rid19588883.guided.35, whole genome shotgun sequence	3712..4149	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNISV010000046.1 Salmonella enterica strain PNUSAS388643 SAMN37664599-rid19588883.denovo.51, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNISV010000062.1 Salmonella enterica strain PNUSAS388643 SAMN37664599-rid19588883.guided.50, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	tet(B)	100	1206/1206	ABNISV010000040.1 Salmonella enterica strain PNUSAS388643 SAMN37664599-rid19588883.denovo.43, whole genome shotgun sequence	423..1628	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNISV010000061.1 Salmonella enterica strain PNUSAS388643 SAMN37664599-rid19588883.guided.48, whole genome shotgun sequence	1959..3164	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	100	131 / 131	ABNISV010000046.1 Salmonella enterica strain PNUSAS388643 SAMN37664599-rid19588883.denovo.51, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNISV010000062.1 Salmonella enterica strain PNUSAS388643 SAMN37664599-rid19588883.guided.50, whole genome shotgun sequence	2044..2174																																																avrA	ABNISV010000002.1	434758..435627	99.885	870	0						
GCA_032351935.1_PDT001913076.1_genomic.fna	Salmonella_enterica	0.5202	430.183 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNISS010000001.1 Salmonella enterica strain PNUSAS388621 SAMN37664605-rid19588153.denovo.01, whole genome shotgun sequence	562114..562551	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNISS010000033.1 Salmonella enterica strain PNUSAS388621 SAMN37664605-rid19588153.guided.18, whole genome shotgun sequence	2700..3137	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNISS010000010.1	140313..141181	99.195	870	0						
GCA_032351955.1_PDT001913073.1_genomic.fna	Salmonella_enterica	0.5214	729.09 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNISW010000001.1 Salmonella enterica strain PNUSAS388599 SAMN37664604-rid19588133.denovo.01, whole genome shotgun sequence	691937..692374	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNISW010000023.1 Salmonella enterica strain PNUSAS388599 SAMN37664604-rid19588133.guided.18, whole genome shotgun sequence	2821..3258	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABNISW010000011.1 Salmonella enterica strain PNUSAS388599 SAMN37664604-rid19588133.denovo.11, whole genome shotgun sequence	26820..27141																																																						avrA	ABNISW010000002.1	655492..656362	99.656	871	0						
GCA_032351975.1_PDT001913071.1_genomic.fna	Salmonella_enterica	0.5227	513.92 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1A,blaTEM-1A	0		1	IncB/O/K/Z,IncB/O/K/Z	aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNISY010000001.1 Salmonella enterica strain PNUSAS388641 SAMN37664598-rid19588123.denovo.01, whole genome shotgun sequence	666959..667396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNISY010000027.1 Salmonella enterica strain PNUSAS388641 SAMN37664598-rid19588123.guided.18, whole genome shotgun sequence	5025..5462	Amikacin, Tobramycin	NC_003197	blaTEM-1A	100	861/861	ABNISY010000011.1 Salmonella enterica strain PNUSAS388641 SAMN37664598-rid19588123.denovo.11, whole genome shotgun sequence	37255..38115	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNISY010000025.1 Salmonella enterica strain PNUSAS388641 SAMN37664598-rid19588123.guided.13, whole genome shotgun sequence	5408..6268	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncB/O/K/Z	92	150 / 149	ABNISY010000011.1 Salmonella enterica strain PNUSAS388641 SAMN37664598-rid19588123.denovo.11, whole genome shotgun sequence	43423..43571	enterobacteriales	IncB/O/K/Z	92	150 / 149	ABNISY010000025.1 Salmonella enterica strain PNUSAS388641 SAMN37664598-rid19588123.guided.13, whole genome shotgun sequence	11576..11724																																																avrA	ABNISY010000003.1	510000..510869	99.195	870	0						
GCA_032351995.1_PDT001913070.1_genomic.fna	Salmonella_enterica	0.5209	504.555 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNISX010000001.1 Salmonella enterica strain PNUSAS388645 SAMN37664596-rid19588113.denovo.01, whole genome shotgun sequence	477437..477874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNISX010000028.1 Salmonella enterica strain PNUSAS388645 SAMN37664596-rid19588113.guided.15, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNISX010000002.1	551517..552386	99.195	870	0						
GCA_032352015.1_PDT001913064.1_genomic.fna	Salmonella_enterica	0.5224	410.978 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNITA010000001.1 Salmonella enterica strain PNUSAS388648 SAMN37664594-rid19588843.denovo.01, whole genome shotgun sequence	833321..833758	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNITA010000022.1 Salmonella enterica strain PNUSAS388648 SAMN37664594-rid19588843.guided.16, whole genome shotgun sequence	3553..3990	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNITA010000002.1	563315..564184	99.77	870	0						
GCA_032352035.1_PDT001913046.1_genomic.fna	Salmonella_enterica	0.5138	328.703 KB	6	aroC_262*,dnaN_25,hemD_29,hisD_211,purE_20,sucA_252,thrA_340	Unknown	40:z36:-	0		1	parC_p.T57S	1	IncFII(S)	aroC	99.8003992015968	100	aroC_262*	dnaN	100	100	dnaN_25	hemD	100	100	hemD_29	hisD	100	100	hisD_211	purE	100	100	purE_20	sucA	100	100	sucA_252	thrA	100	100	thrA_340	40	z36	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 40:z36:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABNITC010000030.1 Salmonella enterica strain PNUSAS388583 SAMN37664572-rid19587963.denovo.32, whole genome shotgun sequence	3653..3914																																																																	
GCA_032352055.1_PDT001913037.1_genomic.fna	Salmonella_enterica	0.5219	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNITD010000003.1 Salmonella enterica strain PNUSAS388620 SAMN37664561-rid19588763.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNITD010000036.1 Salmonella enterica strain PNUSAS388620 SAMN37664561-rid19588763.guided.27, whole genome shotgun sequence	7613..8050	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNITD010000016.1 Salmonella enterica strain PNUSAS388620 SAMN37664561-rid19588763.denovo.16, whole genome shotgun sequence	44751..45393	enterobacteriales	IncFII(S)	100	262 / 262	ABNITD010000016.1 Salmonella enterica strain PNUSAS388620 SAMN37664561-rid19588763.denovo.16, whole genome shotgun sequence	29405..29666																																																avrA	ABNITD010000005.1	175028..175896	100	869	0						
GCA_032352095.1_PDT001913049.1_genomic.fna	Salmonella_enterica	0.5212	272.904 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(M),tet(B),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNITB010000001.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNITB010000032.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.32, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNITB010000032.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.32, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNITB010000051.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.59, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNITB010000051.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.59, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNITB010000059.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.guided.35, whole genome shotgun sequence	1328..1765	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNITB010000060.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.guided.36, whole genome shotgun sequence	6042..6833	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNITB010000063.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.guided.39, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNITB010000066.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.guided.58, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNITB010000066.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.guided.58, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNITB010000049.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.56, whole genome shotgun sequence	533..1393	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNITB010000067.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.guided.60, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABNITB010000032.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.32, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNITB010000044.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.50, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABNITB010000060.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.guided.36, whole genome shotgun sequence	7095..8354	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNITB010000063.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.guided.39, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNITB010000065.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.guided.53, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	770/819	ABNITB010000047.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.54, whole genome shotgun sequence	1..770	Sulfamethoxazole	AJ514834	sul2	100	770/852	ABNITB010000047.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.54, whole genome shotgun sequence	1..770	Sulfamethoxazole	FJ197818	sul2	100	770/816	ABNITB010000047.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.54, whole genome shotgun sequence	1..770	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNITB010000068.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.guided.62, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNITB010000069.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.guided.63, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	100	816/816	ABNITB010000070.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.guided.64, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNITB010000031.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.31, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNITB010000032.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.32, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABNITB010000063.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.guided.39, whole genome shotgun sequence	4527..6446	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNITB010000064.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.guided.46, whole genome shotgun sequence	4253..5458	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABNITB010000032.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.32, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABNITB010000060.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.guided.36, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																	enterobacteriales	Col156	94.81	154 / 154	ABNITB010000038.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.43, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABNITB010000046.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.52, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABNITB010000050.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.57, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNITB010000029.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.29, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNITB010000022.1 Salmonella enterica strain PNUSAS388588 SAMN37664563-rid19587983.denovo.22, whole genome shotgun sequence	55745..56241																											avrA	ABNITB010000002.1	508765..509634	99.885	870	0						
GCA_032352115.1_PDT001913036.1_genomic.fna	Salmonella_enterica	0.5185	174.877 KB	9	aroC_25,dnaN_176,hemD_27,hisD_22,purE_18,sucA_67,thrA_91	643	47:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_25	dnaN	100	100	dnaN_176	hemD	100	100	hemD_27	hisD	100	100	hisD_22	purE	100	100	purE_18	sucA	100	100	sucA_67	thrA	100	100	thrA_91	47	b	-	Salmonella enterica subspecies salamae (subspecies II)	II 47:b:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	95.43	438/438	ABNITE010000007.1 Salmonella enterica strain PNUSAS388604 SAMN37664328-rid19587883.denovo.07, whole genome shotgun sequence	99227..99664	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.43	438/438	ABNITE010000064.1 Salmonella enterica strain PNUSAS388604 SAMN37664328-rid19587883.guided.41, whole genome shotgun sequence	14701..15138	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.39	446 / 445	ABNITE010000023.1 Salmonella enterica strain PNUSAS388604 SAMN37664328-rid19587883.denovo.23, whole genome shotgun sequence	26154..26598	enterobacteriales	IncFII(Yp)	91.67	216 / 230	ABNITE010000023.1 Salmonella enterica strain PNUSAS388604 SAMN37664328-rid19587883.denovo.23, whole genome shotgun sequence	26859..27073																																																											
GCA_032352135.1_PDT001913031.1_genomic.fna	Salmonella_enterica	0.5226	297.107 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNITF010000001.1 Salmonella enterica strain PNUSAS388602 SAMN37664312-rid19587843.denovo.01, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNITF010000033.1 Salmonella enterica strain PNUSAS388602 SAMN37664312-rid19587843.guided.20, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032352155.1_PDT001913023.1_genomic.fna	Salmonella_enterica	0.5218	257.839 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNITJ010000002.1 Salmonella enterica strain PNUSAS388516 SAMN37664311-rid19587773.denovo.02, whole genome shotgun sequence	145192..145629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNITJ010000059.1 Salmonella enterica strain PNUSAS388516 SAMN37664311-rid19587773.guided.31, whole genome shotgun sequence	8853..9290	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNITJ010000023.1 Salmonella enterica strain PNUSAS388516 SAMN37664311-rid19587773.denovo.23, whole genome shotgun sequence	44740..45382	enterobacteriales	IncFII(S)	100	262 / 262	ABNITJ010000023.1 Salmonella enterica strain PNUSAS388516 SAMN37664311-rid19587773.denovo.23, whole genome shotgun sequence	29394..29655																																																avrA	ABNITJ010000001.1	450786..451655	99.885	870	0						
GCA_032352235.1_PDT001912986.1_genomic.fna	Salmonella_enterica	0.5214	202.548 KB	7	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNITL010000001.1 Salmonella enterica strain PNUSAS388556 SAMN37664144-rid19587483.denovo.01, whole genome shotgun sequence	383367..383804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNITL010000052.1 Salmonella enterica strain PNUSAS388556 SAMN37664144-rid19587483.guided.37, whole genome shotgun sequence	7504..7941	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNITL010000022.1	39345..40213	99.195	870	0						
GCA_032352255.1_PDT001912987.1_genomic.fna	Salmonella_enterica	0.5206	364.009 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNITK010000001.1 Salmonella enterica strain PNUSAS388378 SAMN37664102-rid19588663.denovo.01, whole genome shotgun sequence	414162..414599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNITK010000032.1 Salmonella enterica strain PNUSAS388378 SAMN37664102-rid19588663.guided.24, whole genome shotgun sequence	18394..18831	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNITK010000018.1 Salmonella enterica strain PNUSAS388378 SAMN37664102-rid19588663.denovo.18, whole genome shotgun sequence	34930..35463																																																						avrA	ABNITK010000003.1	394755..395623	99.425	870	0						
GCA_032352275.1_PDT001912981.1_genomic.fna	Salmonella_enterica	0.5218	520.829 KB	4	aroC_16,dnaN_16,hemD_20,hisD_1044,purE_8,sucA_12,thrA_18	4856	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_1044	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNITN010000001.1 Salmonella enterica strain PNUSAS388559 SAMN37664141-rid19587443.denovo.01, whole genome shotgun sequence	136548..136985	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNITN010000025.1 Salmonella enterica strain PNUSAS388559 SAMN37664141-rid19587443.guided.13, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNITN010000003.1	510238..511104	98.966	870	0						
GCA_032352295.1_PDT001912977.1_genomic.fna	Salmonella_enterica	0.5227	450.629 KB	4	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNITM010000001.1 Salmonella enterica strain PNUSAS388368 SAMN37664092-rid19588643.denovo.01, whole genome shotgun sequence	416659..417096	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNITM010000033.1 Salmonella enterica strain PNUSAS388368 SAMN37664092-rid19588643.guided.24, whole genome shotgun sequence	10078..10515	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNITM010000004.1	121418..122287	99.54	870	0						
GCA_032352315.1_PDT001912971.1_genomic.fna	Salmonella_enterica	0.521	489.747 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNITO010000001.1 Salmonella enterica strain PNUSAS388352 SAMN37664110-rid19587363.denovo.01, whole genome shotgun sequence	812851..813288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNITO010000027.1 Salmonella enterica strain PNUSAS388352 SAMN37664110-rid19587363.guided.16, whole genome shotgun sequence	26099..26536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNITO010000016.1 Salmonella enterica strain PNUSAS388352 SAMN37664110-rid19587363.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNITO010000017.1 Salmonella enterica strain PNUSAS388352 SAMN37664110-rid19587363.denovo.20, whole genome shotgun sequence	3414..3675																																																avrA	ABNITO010000002.1	553366..554235	99.54	870	0						
GCA_032352335.1_PDT001912969.1_genomic.fna	Salmonella_enterica	0.5214	381.909 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNITP010000001.1 Salmonella enterica strain PNUSAS388355 SAMN37664113-rid19587343.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNITP010000030.1 Salmonella enterica strain PNUSAS388355 SAMN37664113-rid19587343.guided.24, whole genome shotgun sequence	2294..2731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNITP010000020.1 Salmonella enterica strain PNUSAS388355 SAMN37664113-rid19587343.denovo.21, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNITP010000022.1 Salmonella enterica strain PNUSAS388355 SAMN37664113-rid19587343.denovo.23, whole genome shotgun sequence	3386..3647																																																avrA	ABNITP010000002.1	553636..554505	99.54	870	0						
GCA_032352355.1_PDT001912967.1_genomic.fna	Salmonella_enterica	0.5219	728.62 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNITQ010000001.1 Salmonella enterica strain PNUSAS388453 SAMN37664107-rid19588623.denovo.01, whole genome shotgun sequence	417119..417556	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNITQ010000022.1 Salmonella enterica strain PNUSAS388453 SAMN37664107-rid19588623.guided.11, whole genome shotgun sequence	30279..30716	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNITQ010000002.1	562145..563015	99.656	871	0						
GCA_032352375.1_PDT001912966.1_genomic.fna	Salmonella_enterica	0.5224	210.452 KB	7	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNITR010000001.1 Salmonella enterica strain PNUSAS388370 SAMN37664094-rid19587323.denovo.01, whole genome shotgun sequence	666939..667376	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNITR010000046.1 Salmonella enterica strain PNUSAS388370 SAMN37664094-rid19587323.guided.36, whole genome shotgun sequence	2847..3284	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNITR010000007.1	140179..141048	99.31	870	0						
GCA_032352395.1_PDT001912965.1_genomic.fna	Salmonella_enterica	0.5193	337.506 KB	6	aroC_46,dnaN_588,hemD_3,hisD_800,purE_517,sucA_2,thrA_1	3868	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_588	hemD	100	100	hemD_3	hisD	100	100	hisD_800	purE	100	100	purE_517	sucA	100	100	sucA_2	thrA	100	100	thrA_1	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNITS010000001.1 Salmonella enterica strain PNUSAS388380 SAMN37664104-rid19587313.denovo.01, whole genome shotgun sequence	523867..524304	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNITS010000048.1 Salmonella enterica strain PNUSAS388380 SAMN37664104-rid19587313.guided.32, whole genome shotgun sequence	10021..10458	Amikacin, Tobramycin	NC_003197	fosA7	93.14	423/423	ABNITS010000002.1 Salmonella enterica strain PNUSAS388380 SAMN37664104-rid19587313.denovo.02, whole genome shotgun sequence	159569..159991	Fosfomycin	LAPJ01000014	fosA7	93.14	423/423	ABNITS010000046.1 Salmonella enterica strain PNUSAS388380 SAMN37664104-rid19587313.guided.17, whole genome shotgun sequence	87912..88334	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNITS010000003.1	94301..95172	99.541	872	0						
GCA_032352405.1_PDT001912961.1_genomic.fna	Salmonella_enterica	0.5232	263.566 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNITV010000001.1 Salmonella enterica strain PNUSAS388452 SAMN37664106-rid19587283.denovo.01, whole genome shotgun sequence	512985..513422	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNITV010000040.1 Salmonella enterica strain PNUSAS388452 SAMN37664106-rid19587283.guided.29, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNITV010000005.1	144058..144927	99.655	870	0						
GCA_032352435.1_PDT001912963.1_genomic.fna	Salmonella_enterica	0.5227	263.61 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNITT010000001.1 Salmonella enterica strain PNUSAS388363 SAMN37664121-rid19587293.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNITT010000037.1 Salmonella enterica strain PNUSAS388363 SAMN37664121-rid19587293.guided.25, whole genome shotgun sequence	5116..5553	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNITT010000002.1	149828..150697	99.655	870	0						
GCA_032352455.1_PDT001829510.1_genomic.fna	Salmonella_enterica	0.5221	335.6 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNITU010000001.1 Salmonella enterica strain W232-2-1 SAMN36715836-rid18889033.denovo.01, whole genome shotgun sequence	222201..222638	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNITU010000030.1 Salmonella enterica strain W232-2-1 SAMN36715836-rid18889033.guided.21, whole genome shotgun sequence	9186..9623	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNITU010000003.1	28833..29702	98.966	870	0						
GCA_032352465.1_PDT001912960.1_genomic.fna	Salmonella_enterica	0.5213	613.409 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNITW010000001.1 Salmonella enterica strain PNUSAS388351 SAMN37664109-rid19588603.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNITW010000027.1 Salmonella enterica strain PNUSAS388351 SAMN37664109-rid19588603.guided.13, whole genome shotgun sequence	39056..39493	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNITW010000002.1	655212..656082	99.656	871	0						
GCA_032352495.1_PDT001829509.1_genomic.fna	Salmonella_enterica	0.5214	303.896 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNITX010000014.1 Salmonella enterica strain W232-6-1 SAMN36715838-rid18888483.denovo.14, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNITX010000036.1 Salmonella enterica strain W232-6-1 SAMN36715838-rid18888483.guided.19, whole genome shotgun sequence	15010..15447	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNITX010000003.1	131918..132787	98.966	870	0						
GCA_032352695.1_PDT001829495.1_genomic.fna	Salmonella_enterica	0.5213	222.496 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIUH010000002.1 Salmonella enterica strain W058-28-1 SAMN36715817-rid18888983.denovo.02, whole genome shotgun sequence	145229..145666	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIUH010000056.1 Salmonella enterica strain W058-28-1 SAMN36715817-rid18888983.guided.36, whole genome shotgun sequence	6001..6438	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNIUH010000018.1 Salmonella enterica strain W058-28-1 SAMN36715817-rid18888983.denovo.18, whole genome shotgun sequence	44712..45354	enterobacteriales	IncFII(S)	100	262 / 262	ABNIUH010000018.1 Salmonella enterica strain W058-28-1 SAMN36715817-rid18888983.denovo.18, whole genome shotgun sequence	60439..60700																																																avrA	ABNIUH010000005.1	94139..95008	99.885	870	0						
GCA_032352875.1_PDT001829492.1_genomic.fna	Salmonella_enterica	0.5222	496.506 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNIUJ010000001.1 Salmonella enterica strain W233-1-1 SAMN36715814-rid18888363.denovo.01, whole genome shotgun sequence	831966..832403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNIUJ010000036.1 Salmonella enterica strain W233-1-1 SAMN36715814-rid18888363.guided.18, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIUJ010000002.1	129887..130756	98.966	870	0						
GCA_032353015.1_PDT001913111.1_genomic.fna	Salmonella_enterica	0.5213	565.661 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNIUO010000001.1 Salmonella enterica strain PNUSAS388664 SAMN37666040-rid19588413.denovo.01, whole genome shotgun sequence	814929..815366	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNIUO010000028.1 Salmonella enterica strain PNUSAS388664 SAMN37666040-rid19588413.guided.19, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIUO010000002.1	518376..519245	99.425	870	0						
GCA_032353035.1_PDT001913114.1_genomic.fna	Salmonella_enterica	0.5213	443.011 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIUN010000001.1 Salmonella enterica strain PNUSAS388242 SAMN37666049-rid19588983.denovo.01, whole genome shotgun sequence	1318110..1318547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIUN010000023.1 Salmonella enterica strain PNUSAS388242 SAMN37666049-rid19588983.guided.18, whole genome shotgun sequence	2168..2605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIUN010000009.1	150695..151565	99.196	871	0						
GCA_032353055.1_PDT001913099.1_genomic.fna	Salmonella_enterica	0.5203	672.44 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIUP010000001.1 Salmonella enterica strain PNUSAS388245 SAMN37666029-rid19588953.denovo.01, whole genome shotgun sequence	643438..643875	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIUP010000044.1 Salmonella enterica strain PNUSAS388245 SAMN37666029-rid19588953.guided.29, whole genome shotgun sequence	2403..2840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	92.34	261 / 262	ABNIUP010000011.1 Salmonella enterica strain PNUSAS388245 SAMN37666029-rid19588953.denovo.12, whole genome shotgun sequence	39073..39328																																																																	
GCA_032353095.1_PDT001913095.1_genomic.fna	Salmonella_enterica	0.5208	382.713 KB	5	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNIUQ010000001.1 Salmonella enterica strain PNUSAS388258 SAMN37666037-rid19588283.denovo.01, whole genome shotgun sequence	307821..308258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNIUQ010000032.1 Salmonella enterica strain PNUSAS388258 SAMN37666037-rid19588283.guided.20, whole genome shotgun sequence	3288..3725	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032353115.1_PDT001913089.1_genomic.fna	Salmonella_enterica	0.5195	128.866 KB	13	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncFII(p96A)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIUS010000005.1 Salmonella enterica strain PNUSAS388658 SAMN37666012-rid19588933.denovo.05, whole genome shotgun sequence	52427..52864	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIUS010000081.1 Salmonella enterica strain PNUSAS388658 SAMN37666012-rid19588933.guided.57, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIUS010000009.1 Salmonella enterica strain PNUSAS388658 SAMN37666012-rid19588933.denovo.09, whole genome shotgun sequence	151016..151658	enterobacteriales	IncFII(S)	100	262 / 262	ABNIUS010000066.1 Salmonella enterica strain PNUSAS388658 SAMN37666012-rid19588933.denovo.68, whole genome shotgun sequence	3393..3654		enterobacteriales	IncFII(p96A)	97.19	534 / 534	ABNIUS010000036.1 Salmonella enterica strain PNUSAS388658 SAMN37666012-rid19588933.denovo.36, whole genome shotgun sequence	32662..33195																																									avrA	ABNIUS010000003.1	149438..150307	99.54	870	0						
GCA_032353135.1_PDT001913093.1_genomic.fna	Salmonella_enterica	0.5199	711.558 KB	2	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNIUR010000001.1 Salmonella enterica strain PNUSAS388255 SAMN37666022-rid19588273.denovo.01, whole genome shotgun sequence	1436999..1437436	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIUR010000014.1 Salmonella enterica strain PNUSAS388255 SAMN37666022-rid19588273.denovo.15, whole genome shotgun sequence	8027..8863	Streptomycin	M28829	aph(3'')-Ib	99.87	780/804	ABNIUR010000014.1 Salmonella enterica strain PNUSAS388255 SAMN37666022-rid19588273.denovo.15, whole genome shotgun sequence	8863..9642	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNIUR010000029.1 Salmonella enterica strain PNUSAS388255 SAMN37666022-rid19588273.guided.16, whole genome shotgun sequence	2248..3084	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNIUR010000029.1 Salmonella enterica strain PNUSAS388255 SAMN37666022-rid19588273.guided.16, whole genome shotgun sequence	1445..2248	Streptomycin	AF321551	aac(6')-Iaa	99.32	438/438	ABNIUR010000031.1 Salmonella enterica strain PNUSAS388255 SAMN37666022-rid19588273.guided.26, whole genome shotgun sequence	2112..2549	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNIUR010000014.1 Salmonella enterica strain PNUSAS388255 SAMN37666022-rid19588273.denovo.15, whole genome shotgun sequence	85..900	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIUR010000029.1 Salmonella enterica strain PNUSAS388255 SAMN37666022-rid19588273.guided.16, whole genome shotgun sequence	569..1384	Sulfamethoxazole	AY034138	tet(A)	99.83	1200/1200	ABNIUR010000014.1 Salmonella enterica strain PNUSAS388255 SAMN37666022-rid19588273.denovo.15, whole genome shotgun sequence	5401..6600	Doxycycline, Tetracycline	AJ517790	tet(A)	99.83	1200/1200	ABNIUR010000029.1 Salmonella enterica strain PNUSAS388255 SAMN37666022-rid19588273.guided.16, whole genome shotgun sequence	4511..5710	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNIUR010000014.1 Salmonella enterica strain PNUSAS388255 SAMN37666022-rid19588273.denovo.15, whole genome shotgun sequence	1427..1557	enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNIUR010000015.1 Salmonella enterica strain PNUSAS388255 SAMN37666022-rid19588273.denovo.18, whole genome shotgun sequence	4886..5005		enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNIUR010000022.1 Salmonella enterica strain PNUSAS388255 SAMN37666022-rid19588273.denovo.25, whole genome shotgun sequence	1733..1863																																									avrA	ABNIUR010000002.1	572972..573841	99.425	870	0						
GCA_032353155.1_PDT001913085.1_genomic.fna	Salmonella_enterica	0.5212	213.785 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNIUT010000002.1 Salmonella enterica strain PNUSAS388650 SAMN37666020-rid19588203.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNIUT010000055.1 Salmonella enterica strain PNUSAS388650 SAMN37666020-rid19588203.guided.36, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNIUT010000026.1 Salmonella enterica strain PNUSAS388650 SAMN37666020-rid19588203.denovo.26, whole genome shotgun sequence	44772..45414	enterobacteriales	IncFII(S)	100	262 / 262	ABNIUT010000026.1 Salmonella enterica strain PNUSAS388650 SAMN37666020-rid19588203.denovo.26, whole genome shotgun sequence	29426..29687																																																avrA	ABNIUT010000006.1	175018..175886	100	869	0						
GCA_032353175.1_PDT001913086.1_genomic.fna	Salmonella_enterica	0.5217	165.003 KB	9	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:z10:e,n,z15	10	aac(6')-Iaa,aadA2,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aadA2,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,blaTEM-1B,blaTEM-1B,floR,floR,floR,sul1,sul2,sul1,sul2,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	2	IncFIB(K),IncY	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIUU010000001.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.denovo.01, whole genome shotgun sequence	331817..332254	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNIUU010000040.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.denovo.43, whole genome shotgun sequence	3370..4161	Spectinomycin, Streptomycin	JQ364967	aph(3'')-Ib	100	803/804	ABNIUU010000041.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.denovo.44, whole genome shotgun sequence	5836..6638	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNIUU010000041.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.denovo.44, whole genome shotgun sequence	5836..6639	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNIUU010000041.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.denovo.44, whole genome shotgun sequence	5836..6639	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNIUU010000041.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.denovo.44, whole genome shotgun sequence	5836..6639	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNIUU010000041.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.denovo.44, whole genome shotgun sequence	5096..5836	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNIUU010000041.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.denovo.44, whole genome shotgun sequence	5096..5836	Streptomycin	M28829	aac(6')-Iaa	98.63	438/438	ABNIUU010000065.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.guided.36, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNIUU010000068.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.guided.48, whole genome shotgun sequence	4211..5002	Spectinomycin, Streptomycin	JQ364967	aph(3'')-Ib	100	803/804	ABNIUU010000069.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.guided.52, whole genome shotgun sequence	1660..2462	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNIUU010000069.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.guided.52, whole genome shotgun sequence	1659..2462	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNIUU010000069.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.guided.52, whole genome shotgun sequence	1659..2462	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNIUU010000069.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.guided.52, whole genome shotgun sequence	1659..2462	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNIUU010000069.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.guided.52, whole genome shotgun sequence	2462..3202	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNIUU010000069.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.guided.52, whole genome shotgun sequence	2462..3202	Streptomycin	M28829	blaTEM-1B	100	861/861	ABNIUU010000046.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.denovo.50, whole genome shotgun sequence	4501..5361	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNIUU010000074.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.guided.64, whole genome shotgun sequence	446..1306	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNIUU010000052.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.denovo.59, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIUU010000071.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.guided.57, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	floR	98.85	1133/1215	ABNIUU010000072.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.guided.60, whole genome shotgun sequence	937..2069	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNIUU010000040.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.denovo.43, whole genome shotgun sequence	2026..2865	Sulfamethoxazole	U12338	sul2	100	816/816	ABNIUU010000041.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.denovo.44, whole genome shotgun sequence	9010..9825	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNIUU010000068.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.guided.48, whole genome shotgun sequence	5507..6346	Sulfamethoxazole	U12338	sul2	100	816/816	ABNIUU010000073.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.guided.62, whole genome shotgun sequence	618..1433	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNIUU010000047.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.denovo.51, whole genome shotgun sequence	2428..3627	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNIUU010000070.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.guided.53, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABNIUU010000040.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.denovo.43, whole genome shotgun sequence	4569..5066	Trimethoprim	AM040708	dfrA12	100	498/498	ABNIUU010000068.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.guided.48, whole genome shotgun sequence	3306..3803	Trimethoprim	AM040708																																																																																																																																																																																																																																																													parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(K)	98.93	560 / 560	ABNIUU010000038.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.denovo.39, whole genome shotgun sequence	5029..5588	enterobacteriales	IncY	99.74	765 / 765	ABNIUU010000019.1 Salmonella enterica strain PNUSAS388659 SAMN37666013-rid19588213.denovo.19, whole genome shotgun sequence	66650..67414																																																avrA	ABNIUU010000002.1	107435..108304	99.195	870	0						
GCA_032353235.1_PDT001913084.1_genomic.fna	Salmonella_enterica	0.5205	255.387 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIUV010000001.1 Salmonella enterica strain PNUSAS388655 SAMN37666018-rid19588923.denovo.01, whole genome shotgun sequence	477369..477806	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIUV010000036.1 Salmonella enterica strain PNUSAS388655 SAMN37666018-rid19588923.guided.27, whole genome shotgun sequence	10521..10958	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIUV010000011.1	140470..141338	99.195	870	0						
GCA_032353255.1_PDT001913082.1_genomic.fna	Salmonella_enterica	0.5205	364.166 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIUX010000001.1 Salmonella enterica strain PNUSAS388661 SAMN37665834-rid19588913.denovo.01, whole genome shotgun sequence	512587..513024	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIUX010000033.1 Salmonella enterica strain PNUSAS388661 SAMN37665834-rid19588913.guided.27, whole genome shotgun sequence	1665..2102	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIUX010000011.1	140211..141079	99.195	870	0						
GCA_032353295.1_PDT001913083.1_genomic.fna	Salmonella_enterica	0.5208	187.419 KB	7	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIUW010000001.1 Salmonella enterica strain PNUSAS388657 SAMN37666015-rid19588193.denovo.01, whole genome shotgun sequence	374389..374826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIUW010000056.1 Salmonella enterica strain PNUSAS388657 SAMN37666015-rid19588193.guided.38, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIUW010000009.1	140193..141061	99.195	870	0						
GCA_032353335.1_PDT001913079.1_genomic.fna	Salmonella_enterica	0.5222	271.713 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIUZ010000001.1 Salmonella enterica strain PNUSAS388662 SAMN37665833-rid19588903.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIUZ010000030.1 Salmonella enterica strain PNUSAS388662 SAMN37665833-rid19588903.guided.23, whole genome shotgun sequence	10979..11416	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032353355.1_PDT001913081.1_genomic.fna	Salmonella_enterica	0.5214	304.38 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIUY010000001.1 Salmonella enterica strain PNUSAS388651 SAMN37665831-rid19588183.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIUY010000032.1 Salmonella enterica strain PNUSAS388651 SAMN37665831-rid19588183.guided.18, whole genome shotgun sequence	32398..32835	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIUY010000022.1 Salmonella enterica strain PNUSAS388651 SAMN37665831-rid19588183.denovo.23, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNIUY010000025.1 Salmonella enterica strain PNUSAS388651 SAMN37665831-rid19588183.denovo.28, whole genome shotgun sequence	3439..3700																																																avrA	ABNIUY010000002.1	175197..176066	99.54	870	0						
GCA_032353415.1_PDT001913072.1_genomic.fna	Salmonella_enterica	0.521	203.4 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIVB010000003.1 Salmonella enterica strain PNUSAS388596 SAMN37664602-rid19588873.denovo.03, whole genome shotgun sequence	63806..64243	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIVB010000057.1 Salmonella enterica strain PNUSAS388596 SAMN37664602-rid19588873.guided.21, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032353455.1_PDT001913067.1_genomic.fna	Salmonella_enterica	0.5218	268.224 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIVC010000001.1 Salmonella enterica strain PNUSAS388597 SAMN37664603-rid19588853.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIVC010000039.1 Salmonella enterica strain PNUSAS388597 SAMN37664603-rid19588853.guided.27, whole genome shotgun sequence	5021..5458	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNIVC010000006.1	94133..95001	99.77	870	0						
GCA_032353475.1_PDT001913066.1_genomic.fna	Salmonella_enterica	0.5199	448.097 KB	5	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIVD010000008.1 Salmonella enterica strain PNUSAS388640 SAMN37664597-rid19588093.denovo.08, whole genome shotgun sequence	77045..77482	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIVD010000073.1 Salmonella enterica strain PNUSAS388640 SAMN37664597-rid19588093.guided.29, whole genome shotgun sequence	2961..3398	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNIVD010000022.1 Salmonella enterica strain PNUSAS388640 SAMN37664597-rid19588093.denovo.22, whole genome shotgun sequence	5955..6597																																																						avrA	ABNIVD010000007.1	93857..94726	99.77	870	0						
GCA_032353515.1_PDT001913057.1_genomic.fna	Salmonella_enterica	0.5233	302.964 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIVG010000001.1 Salmonella enterica strain PNUSAS388590 SAMN37664570-rid19588813.denovo.01, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIVG010000034.1 Salmonella enterica strain PNUSAS388590 SAMN37664570-rid19588813.guided.20, whole genome shotgun sequence	4312..4749	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032353555.1_PDT001913059.1_genomic.fna	Salmonella_enterica	0.5215	661.819 KB	2	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNIVE010000001.1 Salmonella enterica strain PNUSAS388594 SAMN37664566-rid19588823.denovo.01, whole genome shotgun sequence	648314..648751	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNIVE010000020.1 Salmonella enterica strain PNUSAS388594 SAMN37664566-rid19588823.guided.15, whole genome shotgun sequence	5496..5933	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIVE010000002.1	511356..512225	99.425	870	0						
GCA_032353635.1_PDT001913044.1_genomic.fna	Salmonella_enterica	0.5221	282.825 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,mph(A),mph(A),floR,floR,qnrB19,qnrB19,sul2,sul2,sul2,tet(B),tet(A),tet(B),tet(A),dfrA17,dfrA17	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIVK010000001.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.denovo.01, whole genome shotgun sequence	580653..581090	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIVK010000032.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.denovo.32, whole genome shotgun sequence	3925..4761	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIVK010000032.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.denovo.32, whole genome shotgun sequence	3122..3925	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNIVK010000058.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.guided.43, whole genome shotgun sequence	3208..3645	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIVK010000059.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.guided.44, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIVK010000059.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.guided.44, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNIVK010000060.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.guided.45, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIVK010000060.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.guided.45, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNIVK010000046.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.denovo.57, whole genome shotgun sequence	511..1371	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNIVK010000067.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.guided.59, whole genome shotgun sequence	246..1106	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNIVK010000041.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.denovo.46, whole genome shotgun sequence	3276..4181	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	ABNIVK010000066.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.guided.55, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNIVK010000032.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.denovo.32, whole genome shotgun sequence	7897..9110	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNIVK010000061.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.guided.48, whole genome shotgun sequence	2237..3450	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNIVK010000043.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.denovo.51, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIVK010000063.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.guided.50, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABNIVK010000032.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.denovo.32, whole genome shotgun sequence	2246..3061	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNIVK010000059.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.guided.44, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIVK010000060.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.guided.45, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNIVK010000031.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.denovo.31, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	99.92	1275/1275	ABNIVK010000032.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.denovo.32, whole genome shotgun sequence	6022..7296	Doxycycline, Tetracycline	AF534183	tet(B)	100	1206/1206	ABNIVK010000062.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.guided.49, whole genome shotgun sequence	2081..3286	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	99.92	1275/1275	ABNIVK010000065.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.guided.53, whole genome shotgun sequence	1195..2469	Doxycycline, Tetracycline	AF534183	dfrA17	100	474/474	ABNIVK010000044.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.denovo.54, whole genome shotgun sequence	75..548	Trimethoprim	FJ460238	dfrA17	100	474/474	ABNIVK010000064.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.guided.52, whole genome shotgun sequence	1910..2383	Trimethoprim	FJ460238																																																																																																																																																																																																																																																																																																													enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIVK010000043.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.denovo.51, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIVK010000063.1 Salmonella enterica strain PNUSAS388592 SAMN37664569-rid19587943.guided.50, whole genome shotgun sequence	2044..2174																																																avrA	ABNIVK010000002.1	622546..623415	99.885	870	0						
GCA_032353695.1_PDT001913052.1_genomic.fna	Salmonella_enterica	0.5222	260.27 KB	6	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNIVI010000002.1 Salmonella enterica strain PNUSAS388581 SAMN37664576-rid19588793.denovo.02, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNIVI010000037.1 Salmonella enterica strain PNUSAS388581 SAMN37664576-rid19588793.guided.17, whole genome shotgun sequence	39050..39487	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNIVI010000006.1	93732..94601	99.77	870	0						
GCA_032353715.1_PDT001913035.1_genomic.fna	Salmonella_enterica	0.5215	255.333 KB	7	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIVL010000008.1 Salmonella enterica strain PNUSAS388603 SAMN37664326-rid19587873.denovo.08, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIVL010000046.1 Salmonella enterica strain PNUSAS388603 SAMN37664326-rid19587873.guided.31, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIVL010000002.1	93991..94859	99.31	870	0						
GCA_032353735.1_PDT001913033.1_genomic.fna	Salmonella_enterica	0.5211	556.4 KB	4	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIVN010000002.1 Salmonella enterica strain PNUSAS388605 SAMN37664329-rid19587853.denovo.02, whole genome shotgun sequence	479379..479816	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNIVN010000016.1 Salmonella enterica strain PNUSAS388605 SAMN37664329-rid19587853.guided.14, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIVN010000003.1	569492..570361	99.425	870	0						
GCA_032353755.1_PDT001913042.1_genomic.fna	Salmonella_enterica	0.5135	161.616 KB	8	aroC_380,dnaN_482,hemD_276,hisD_511,purE_240,sucA_360,thrA_208	2868	40:z4,z32:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_380	dnaN	100	100	dnaN_482	hemD	100	100	hemD_276	hisD	100	100	hisD_511	purE	100	100	purE_240	sucA	100	100	sucA_360	thrA	100	100	thrA_208	40	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV [1],40:z4,z32:-	SalmID reports this as ssp VII, which has not been formally recognized.	O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032353795.1_PDT001913027.1_genomic.fna	Salmonella_enterica	0.5213	278.112 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul2,tet(B),tet(B)	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIVO010000001.1 Salmonella enterica strain PNUSAS388600 SAMN37664313-rid19588743.denovo.01, whole genome shotgun sequence	580429..580866	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIVO010000035.1 Salmonella enterica strain PNUSAS388600 SAMN37664313-rid19588743.denovo.39, whole genome shotgun sequence	808..1644	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIVO010000035.1 Salmonella enterica strain PNUSAS388600 SAMN37664313-rid19588743.denovo.39, whole genome shotgun sequence	1644..2447	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNIVO010000055.1 Salmonella enterica strain PNUSAS388600 SAMN37664313-rid19588743.guided.32, whole genome shotgun sequence	1043..1480	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNIVO010000057.1 Salmonella enterica strain PNUSAS388600 SAMN37664313-rid19588743.guided.40, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNIVO010000057.1 Salmonella enterica strain PNUSAS388600 SAMN37664313-rid19588743.guided.40, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNIVO010000044.1 Salmonella enterica strain PNUSAS388600 SAMN37664313-rid19588743.denovo.51, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNIVO010000059.1 Salmonella enterica strain PNUSAS388600 SAMN37664313-rid19588743.guided.50, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNIVO010000043.1 Salmonella enterica strain PNUSAS388600 SAMN37664313-rid19588743.denovo.49, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIVO010000058.1 Salmonella enterica strain PNUSAS388600 SAMN37664313-rid19588743.guided.47, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABNIVO010000035.1 Salmonella enterica strain PNUSAS388600 SAMN37664313-rid19588743.denovo.39, whole genome shotgun sequence	2508..3323	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNIVO010000057.1 Salmonella enterica strain PNUSAS388600 SAMN37664313-rid19588743.guided.40, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNIVO010000031.1 Salmonella enterica strain PNUSAS388600 SAMN37664313-rid19588743.denovo.34, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNIVO010000056.1 Salmonella enterica strain PNUSAS388600 SAMN37664313-rid19588743.guided.35, whole genome shotgun sequence	8581..9786	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIVO010000043.1 Salmonella enterica strain PNUSAS388600 SAMN37664313-rid19588743.denovo.49, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIVO010000058.1 Salmonella enterica strain PNUSAS388600 SAMN37664313-rid19588743.guided.47, whole genome shotgun sequence	2416..2546																																																avrA	ABNIVO010000002.1	402683..403552	99.885	870	0						
GCA_032354295.1_PDT001829491.1_genomic.fna	Salmonella_enterica	0.521	398.464 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNIVT010000003.1 Salmonella enterica strain MPSPSA2163-2 SAMN36715815-rid18888353.denovo.03, whole genome shotgun sequence	255071..255508	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNIVT010000049.1 Salmonella enterica strain MPSPSA2163-2 SAMN36715815-rid18888353.guided.27, whole genome shotgun sequence	2005..2442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIVT010000002.1	39468..40336	99.425	870	0						
GCA_032354335.1_PDT001912970.1_genomic.fna	Salmonella_enterica	0.5203	191.425 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIVS010000001.1 Salmonella enterica strain PNUSAS388358 SAMN37664116-rid19587353.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIVS010000053.1 Salmonella enterica strain PNUSAS388358 SAMN37664116-rid19587353.guided.26, whole genome shotgun sequence	20610..21047	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNIVS010000028.1 Salmonella enterica strain PNUSAS388358 SAMN37664116-rid19587353.denovo.29, whole genome shotgun sequence	15449..15982																																																						avrA	ABNIVS010000002.1	208425..209293	99.77	870	0						
GCA_032354355.1_PDT001912972.1_genomic.fna	Salmonella_enterica	0.5227	368.405 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIVR010000001.1 Salmonella enterica strain PNUSAS388365 SAMN37664089-rid19588633.denovo.01, whole genome shotgun sequence	626785..627222	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIVR010000039.1 Salmonella enterica strain PNUSAS388365 SAMN37664089-rid19588633.guided.20, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIVR010000002.1	150017..150886	99.655	870	0						
GCA_032354375.1_PDT001912982.1_genomic.fna	Salmonella_enterica	0.5199	166.306 KB	8	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	5	Col(pHAD28),Col440I,ColRNAI,IncFII(pCTU2),pESA2	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNIVP010000005.1 Salmonella enterica strain PNUSAS388371 SAMN37664095-rid19588653.denovo.05, whole genome shotgun sequence	230358..230795	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNIVP010000067.1 Salmonella enterica strain PNUSAS388371 SAMN37664095-rid19588653.guided.41, whole genome shotgun sequence	5679..6116	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNIVP010000046.1 Salmonella enterica strain PNUSAS388371 SAMN37664095-rid19588653.denovo.49, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	94.59	111 / 114	ABNIVP010000045.1 Salmonella enterica strain PNUSAS388371 SAMN37664095-rid19588653.denovo.48, whole genome shotgun sequence	3175..3285		enterobacteriales	ColRNAI	90.08	131 / 130	ABNIVP010000044.1 Salmonella enterica strain PNUSAS388371 SAMN37664095-rid19588653.denovo.47, whole genome shotgun sequence	3981..4111		enterobacteriales	IncFII(pCTU2)	97.23	577 / 577	ABNIVP010000031.1 Salmonella enterica strain PNUSAS388371 SAMN37664095-rid19588653.denovo.31, whole genome shotgun sequence	6055..6631		enterobacteriales	pESA2	98.4	750 / 750	ABNIVP010000031.1 Salmonella enterica strain PNUSAS388371 SAMN37664095-rid19588653.denovo.31, whole genome shotgun sequence	22450..23199																											avrA	ABNIVP010000013.1	119051..119920	99.54	870	0						
GCA_032354395.1_PDT001829487.1_genomic.fna	Salmonella_enterica	0.5209	243.626 KB	6	aroC_84,dnaN_76,hemD_38,hisD_16,purE_12,sucA_13,thrA_4	226	6,14:y:1,7	3	aac(6')-Iaa,aac(6')-Iaa,sul1,sul1,dfrA25,dfrA25	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_76	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	6,14	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Carrau		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIVW010000001.1 Salmonella enterica strain W190-43-1 SAMN36715816-rid18888323.denovo.01, whole genome shotgun sequence	257292..257729	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIVW010000051.1 Salmonella enterica strain W190-43-1 SAMN36715816-rid18888323.guided.37, whole genome shotgun sequence	5579..6016	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNIVW010000016.1 Salmonella enterica strain W190-43-1 SAMN36715816-rid18888323.denovo.16, whole genome shotgun sequence	54775..55614	Sulfamethoxazole	U12338	sul1	100	840/840	ABNIVW010000048.1 Salmonella enterica strain W190-43-1 SAMN36715816-rid18888323.guided.19, whole genome shotgun sequence	15985..16824	Sulfamethoxazole	U12338	dfrA25	100	459/459	ABNIVW010000016.1 Salmonella enterica strain W190-43-1 SAMN36715816-rid18888323.denovo.16, whole genome shotgun sequence	56138..56596	Trimethoprim	DQ267940	dfrA25	100	459/459	ABNIVW010000048.1 Salmonella enterica strain W190-43-1 SAMN36715816-rid18888323.guided.19, whole genome shotgun sequence	15003..15461	Trimethoprim	DQ267940																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIVW010000002.1	150117..150985	98.851	870	0						
GCA_032354415.1_PDT001829489.1_genomic.fna	Salmonella_enterica	0.5221	201.946 KB	8	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIVU010000013.1 Salmonella enterica strain MPSPSA2164 SAMN36715813-rid18888343.denovo.13, whole genome shotgun sequence	105018..105455	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIVU010000045.1 Salmonella enterica strain MPSPSA2164 SAMN36715813-rid18888343.guided.36, whole genome shotgun sequence	2720..3157	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNIVU010000036.1 Salmonella enterica strain MPSPSA2164 SAMN36715813-rid18888343.denovo.39, whole genome shotgun sequence	557..687	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNIVU010000037.1 Salmonella enterica strain MPSPSA2164 SAMN36715813-rid18888343.denovo.40, whole genome shotgun sequence	1708..1838																																																											
GCA_032354425.1_PDT001829488.1_genomic.fna	Salmonella_enterica	0.5214	499.816 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNIVV010000001.1 Salmonella enterica strain W232-8-1 SAMN36715810-rid18888333.denovo.01, whole genome shotgun sequence	831966..832403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNIVV010000032.1 Salmonella enterica strain W232-8-1 SAMN36715810-rid18888333.guided.10, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIVV010000002.1	28833..29702	98.966	870	0						
GCA_032354455.1_PDT001829486.1_genomic.fna	Salmonella_enterica	0.5129	226.373 KB	9	aroC_33,dnaN_26,hemD_30,hisD_282,purE_229,sucA_1348,thrA_28	9869	50:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_282	purE	100	100	purE_229	sucA	100	100	sucA_1348	thrA	100	100	thrA_28	50	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 50:r:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNIVZ010000004.1 Salmonella enterica strain W178-29-3 SAMN36715812-rid18888313.denovo.04, whole genome shotgun sequence	107805..108242	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNIVZ010000097.1 Salmonella enterica strain W178-29-3 SAMN36715812-rid18888313.guided.33, whole genome shotgun sequence	18795..19232	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIVZ010000007.1	177849..178718	96.552	870	0						
GCA_032354475.1_PDT001829483.1_genomic.fna	Salmonella_enterica	0.5191	528.434 KB	4	aroC_41,dnaN_42,hemD_43,hisD_733,purE_9,sucA_558,thrA_2	2881	8:d:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),ColpVC	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_733	purE	100	100	purE_9	sucA	100	100	sucA_558	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNIVX010000002.1 Salmonella enterica strain MPSPSA2163-4 SAMN36715801-rid18888293.denovo.02, whole genome shotgun sequence	477375..477812	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNIVX010000027.1 Salmonella enterica strain MPSPSA2163-4 SAMN36715801-rid18888293.guided.17, whole genome shotgun sequence	1964..2401	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIVX010000022.1 Salmonella enterica strain MPSPSA2163-4 SAMN36715801-rid18888293.denovo.25, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIVX010000030.1 Salmonella enterica strain MPSPSA2163-4 SAMN36715801-rid18888293.guided.27, whole genome shotgun sequence	687..1331	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNIVX010000021.1 Salmonella enterica strain MPSPSA2163-4 SAMN36715801-rid18888293.denovo.24, whole genome shotgun sequence	611..741	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIVX010000022.1 Salmonella enterica strain MPSPSA2163-4 SAMN36715801-rid18888293.denovo.25, whole genome shotgun sequence	1150..1280		enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIVX010000030.1 Salmonella enterica strain MPSPSA2163-4 SAMN36715801-rid18888293.guided.27, whole genome shotgun sequence	31..161		enterobacteriales	ColpVC	97.38	191 / 193	ABNIVX010000024.1 Salmonella enterica strain MPSPSA2163-4 SAMN36715801-rid18888293.denovo.28, whole genome shotgun sequence	1517..1707																																		avrA	ABNIVX010000003.1	140159..141028	99.425	870	0						
GCA_032354515.1_PDT001829475.1_genomic.fna	Salmonella_enterica	0.5201	694.492 KB	2	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),ColpVC	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIVY010000001.1 Salmonella enterica strain W229-10-1 SAMN36715389-rid18888943.denovo.01, whole genome shotgun sequence	830204..830641	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIVY010000026.1 Salmonella enterica strain W229-10-1 SAMN36715389-rid18888943.guided.18, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIVY010000017.1 Salmonella enterica strain W229-10-1 SAMN36715389-rid18888943.denovo.21, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIVY010000027.1 Salmonella enterica strain W229-10-1 SAMN36715389-rid18888943.guided.20, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIVY010000017.1 Salmonella enterica strain W229-10-1 SAMN36715389-rid18888943.denovo.21, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIVY010000027.1 Salmonella enterica strain W229-10-1 SAMN36715389-rid18888943.guided.20, whole genome shotgun sequence	2334..2464		enterobacteriales	ColpVC	100	193 / 193	ABNIVY010000018.1 Salmonella enterica strain W229-10-1 SAMN36715389-rid18888943.denovo.22, whole genome shotgun sequence	1397..1589																																									avrA	ABNIVY010000003.1	170193..171062	98.966	870	0						
GCA_032354555.1_PDT001829473.1_genomic.fna	Salmonella_enterica	0.5225	655.358 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIWA010000001.1 Salmonella enterica strain W228-1-1 SAMN36715387-rid18888213.denovo.01, whole genome shotgun sequence	1319493..1319930	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIWA010000020.1 Salmonella enterica strain W228-1-1 SAMN36715387-rid18888213.guided.15, whole genome shotgun sequence	6126..6563	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIWA010000003.1	560492..561362	99.656	871	0						
GCA_032354565.1_PDT001829472.1_genomic.fna	Salmonella_enterica	0.5149	201.864 KB	9	aroC_30*,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433*	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	IncFIB(pB171),IncFII(SARC14),IncFII(Yp),IncFII(pMET)	aroC	99.8003992015968	100	aroC_30*	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNIWB010000007.1 Salmonella enterica strain W227-13-1 SAMN36715384-rid18888203.denovo.07, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNIWB010000088.1 Salmonella enterica strain W227-13-1 SAMN36715384-rid18888203.guided.40, whole genome shotgun sequence	4349..4786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNIWB010000013.1 Salmonella enterica strain W227-13-1 SAMN36715384-rid18888203.denovo.13, whole genome shotgun sequence	20559..21201	enterobacteriales	IncFII(SARC14)	95.29	446 / 445	ABNIWB010000013.1 Salmonella enterica strain W227-13-1 SAMN36715384-rid18888203.denovo.13, whole genome shotgun sequence	130625..131069		enterobacteriales	IncFII(Yp)	90.74	216 / 230	ABNIWB010000013.1 Salmonella enterica strain W227-13-1 SAMN36715384-rid18888203.denovo.13, whole genome shotgun sequence	131330..131544		enterobacteriales	IncFII(pMET)	90.24	584 / 577	ABNIWB010000032.1 Salmonella enterica strain W227-13-1 SAMN36715384-rid18888203.denovo.33, whole genome shotgun sequence	15932..16514																																													
GCA_032354615.1_PDT001829469.1_genomic.fna	Salmonella_enterica	0.5153	192.612 KB	9	aroC_30*,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433*	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	IncFIB(pB171),IncFII(SARC14),IncFII(Yp),IncFII(pMET)	aroC	99.8003992015968	100	aroC_30*	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNIWC010000012.1 Salmonella enterica strain W227-7-1 SAMN36715388-rid18888183.denovo.12, whole genome shotgun sequence	4415..4852	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNIWC010000095.1 Salmonella enterica strain W227-7-1 SAMN36715388-rid18888183.guided.65, whole genome shotgun sequence	642..1079	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNIWC010000010.1 Salmonella enterica strain W227-7-1 SAMN36715388-rid18888183.denovo.10, whole genome shotgun sequence	20559..21201	enterobacteriales	IncFII(SARC14)	95.29	446 / 445	ABNIWC010000010.1 Salmonella enterica strain W227-7-1 SAMN36715388-rid18888183.denovo.10, whole genome shotgun sequence	130625..131069		enterobacteriales	IncFII(Yp)	90.74	216 / 230	ABNIWC010000010.1 Salmonella enterica strain W227-7-1 SAMN36715388-rid18888183.denovo.10, whole genome shotgun sequence	131330..131544		enterobacteriales	IncFII(pMET)	90.24	584 / 577	ABNIWC010000035.1 Salmonella enterica strain W227-7-1 SAMN36715388-rid18888183.denovo.36, whole genome shotgun sequence	20402..20984																																													
GCA_032354755.1_PDT001829457.1_genomic.fna	Salmonella_enterica	0.5223	62.568 KB	24	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIWI010000053.1 Salmonella enterica strain PNUSAS366727 SAMN36715372-rid18888083.denovo.053, whole genome shotgun sequence	20203..20640	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIWI010000134.1 Salmonella enterica strain PNUSAS366727 SAMN36715372-rid18888083.guided.068, whole genome shotgun sequence	15468..15905	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIWI010000079.1 Salmonella enterica strain PNUSAS366727 SAMN36715372-rid18888083.denovo.081, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNIWI010000089.1 Salmonella enterica strain PNUSAS366727 SAMN36715372-rid18888083.denovo.092, whole genome shotgun sequence	3395..3656																																																avrA	ABNIWI010000013.1	81622..82491	99.54	870	0						
GCA_032354775.1_PDT001829456.1_genomic.fna	Salmonella_enterica	0.5226	79.038 KB	20	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIWJ010000037.1 Salmonella enterica strain PNUSAS366726 SAMN36715373-rid18888073.denovo.037, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIWJ010000104.1 Salmonella enterica strain PNUSAS366726 SAMN36715373-rid18888073.guided.076, whole genome shotgun sequence	4016..4453	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABNIWJ010000035.1 Salmonella enterica strain PNUSAS366726 SAMN36715373-rid18888073.denovo.035, whole genome shotgun sequence	25281..25540																																																																	
GCA_032354795.1_PDT001829449.1_genomic.fna	Salmonella_enterica	0.5203	398.206 KB	3	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),ColpVC	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIWN010000001.1 Salmonella enterica strain W229-3-1 SAMN36715365-rid18888043.denovo.01, whole genome shotgun sequence	830204..830641	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIWN010000024.1 Salmonella enterica strain W229-3-1 SAMN36715365-rid18888043.guided.17, whole genome shotgun sequence	8875..9312	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIWN010000020.1 Salmonella enterica strain W229-3-1 SAMN36715365-rid18888043.denovo.24, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIWN010000027.1 Salmonella enterica strain W229-3-1 SAMN36715365-rid18888043.guided.23, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIWN010000020.1 Salmonella enterica strain W229-3-1 SAMN36715365-rid18888043.denovo.24, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIWN010000027.1 Salmonella enterica strain W229-3-1 SAMN36715365-rid18888043.guided.23, whole genome shotgun sequence	2334..2464		enterobacteriales	ColpVC	100	193 / 193	ABNIWN010000021.1 Salmonella enterica strain W229-3-1 SAMN36715365-rid18888043.denovo.25, whole genome shotgun sequence	1397..1589																																									avrA	ABNIWN010000005.1	39471..40340	98.966	870	0						
GCA_032354815.1_PDT001829454.1_genomic.fna	Salmonella_enterica	0.5218	86.691 KB	19	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIWK010000004.1 Salmonella enterica strain PNUSAS366724 SAMN36715370-rid18888063.denovo.004, whole genome shotgun sequence	52260..52697	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIWK010000106.1 Salmonella enterica strain PNUSAS366724 SAMN36715370-rid18888063.guided.080, whole genome shotgun sequence	4869..5306	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIWK010000063.1 Salmonella enterica strain PNUSAS366724 SAMN36715370-rid18888063.denovo.063, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNIWK010000075.1 Salmonella enterica strain PNUSAS366724 SAMN36715370-rid18888063.denovo.075, whole genome shotgun sequence	3402..3663																																																avrA	ABNIWK010000003.1	110005..110874	99.54	870	0						
GCA_032354875.1_PDT001829451.1_genomic.fna	Salmonella_enterica	0.5235	53.811 KB	28	aroC_6,dnaN_14,hemD_26,hisD_583,purE_8,sucA_9,thrA_38	2065	-:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_14	hemD	100	100	hemD_26	hisD	100	100	hisD_583	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_38	-	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:l,v:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIWM010000016.1 Salmonella enterica strain PNUSAS366725 SAMN36715369-rid18888883.denovo.016, whole genome shotgun sequence	52484..52921	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIWM010000168.1 Salmonella enterica strain PNUSAS366725 SAMN36715369-rid18888883.guided.078, whole genome shotgun sequence	15736..16173	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIWM010000020.1	61569..62438	99.425	870	0						
GCA_032354895.1_PDT001829448.1_genomic.fna	Salmonella_enterica	0.5223	712.013 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIWO010000001.1 Salmonella enterica strain W228-9-1 SAMN36715363-rid18888033.denovo.01, whole genome shotgun sequence	862121..862558	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIWO010000019.1 Salmonella enterica strain W228-9-1 SAMN36715363-rid18888033.guided.15, whole genome shotgun sequence	3906..4343	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIWO010000003.1	560493..561363	99.656	871	0						
GCA_032354915.1_PDT001829447.1_genomic.fna	Salmonella_enterica	0.5205	300.515 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIWP010000004.1 Salmonella enterica strain I-MAP-07B-2 SAMN31139101-rid18888023.denovo.04, whole genome shotgun sequence	115018..115455	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIWP010000042.1 Salmonella enterica strain I-MAP-07B-2 SAMN31139101-rid18888023.guided.26, whole genome shotgun sequence	5910..6347	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIWP010000022.1 Salmonella enterica strain I-MAP-07B-2 SAMN31139101-rid18888023.denovo.23, whole genome shotgun sequence	15086..15728	enterobacteriales	IncFII(S)	100	262 / 262	ABNIWP010000028.1 Salmonella enterica strain I-MAP-07B-2 SAMN31139101-rid18888023.denovo.31, whole genome shotgun sequence	301..562		enterobacteriales	IncX1	98.66	374 / 374	ABNIWP010000025.1 Salmonella enterica strain I-MAP-07B-2 SAMN31139101-rid18888023.denovo.28, whole genome shotgun sequence	1857..2230																																									avrA	ABNIWP010000001.1	552809..553678	99.54	870	0						
GCA_032354955.1_PDT001829437.1_genomic.fna	Salmonella_enterica	0.5217	728.964 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIWQ010000001.1 Salmonella enterica strain W230-10-1 SAMN36715201-rid18887963.denovo.01, whole genome shotgun sequence	704760..705197	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIWQ010000023.1 Salmonella enterica strain W230-10-1 SAMN36715201-rid18887963.guided.16, whole genome shotgun sequence	5701..6138	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIWQ010000002.1	560788..561658	99.656	871	0						
GCA_032354975.1_PDT001829434.1_genomic.fna	Salmonella_enterica	0.5223	509.333 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIWR010000003.1 Salmonella enterica strain W230-9-1 SAMN36715192-rid18887943.denovo.03, whole genome shotgun sequence	372589..373026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIWR010000022.1 Salmonella enterica strain W230-9-1 SAMN36715192-rid18887943.guided.15, whole genome shotgun sequence	450..887	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIWR010000002.1	560778..561648	99.656	871	0						
GCA_032354995.1_PDT001829432.1_genomic.fna	Salmonella_enterica	0.5142	170.617 KB	11	aroC_33,dnaN_173,hemD_30,hisD_26,purE_141,sucA_275,thrA_28	1256	48:i:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_173	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_141	sucA	100	100	sucA_275	thrA	100	100	thrA_28	48	i	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:i:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIWT010000014.1 Salmonella enterica strain 6-MAP-04-2 SAMN36715187-rid18887933.denovo.014, whole genome shotgun sequence	115213..115650	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIWT010000103.1 Salmonella enterica strain 6-MAP-04-2 SAMN36715187-rid18887933.guided.044, whole genome shotgun sequence	7418..7855	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIWT010000007.1	89667..90536	96.667	870	0						
GCA_032355015.1_PDT001829429.1_genomic.fna	Salmonella_enterica	0.514	172.123 KB	11	aroC_33,dnaN_173,hemD_30,hisD_26,purE_141,sucA_275,thrA_28	1256	48:i:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_173	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_141	sucA	100	100	sucA_275	thrA	100	100	thrA_28	48	i	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:i:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIWS010000014.1 Salmonella enterica strain 6-MAP-03-3 SAMN36715197-rid18887923.denovo.014, whole genome shotgun sequence	118693..119130	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIWS010000102.1 Salmonella enterica strain 6-MAP-03-3 SAMN36715197-rid18887923.guided.039, whole genome shotgun sequence	24375..24812	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIWS010000005.1	154954..155823	96.667	870	0						
GCA_032355035.1_PDT001829427.1_genomic.fna	Salmonella_enterica	0.5212	480.173 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIWU010000001.1 Salmonella enterica strain PNUSAS366706 SAMN36715167-rid18887913.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIWU010000027.1 Salmonella enterica strain PNUSAS366706 SAMN36715167-rid18887913.guided.17, whole genome shotgun sequence	19290..19727	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIWU010000016.1 Salmonella enterica strain PNUSAS366706 SAMN36715167-rid18887913.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNIWU010000018.1 Salmonella enterica strain PNUSAS366706 SAMN36715167-rid18887913.denovo.21, whole genome shotgun sequence	3402..3663																																																avrA	ABNIWU010000002.1	553426..554295	99.54	870	0						
GCA_032355055.1_PDT001829425.1_genomic.fna	Salmonella_enterica	0.5212	489.746 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIWW010000001.1 Salmonella enterica strain PNUSAS366705 SAMN36715171-rid18888773.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIWW010000025.1 Salmonella enterica strain PNUSAS366705 SAMN36715171-rid18888773.guided.16, whole genome shotgun sequence	16570..17007	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIWW010000016.1 Salmonella enterica strain PNUSAS366705 SAMN36715171-rid18888773.denovo.18, whole genome shotgun sequence	6827..7469	enterobacteriales	IncFII(S)	100	262 / 262	ABNIWW010000018.1 Salmonella enterica strain PNUSAS366705 SAMN36715171-rid18888773.denovo.20, whole genome shotgun sequence	3395..3656																																																avrA	ABNIWW010000002.1	552682..553551	99.54	870	0						
GCA_032355095.1_PDT001829424.1_genomic.fna	Salmonella_enterica	0.521	284.072 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIWX010000001.1 Salmonella enterica strain PNUSAS366707 SAMN36715168-rid18887893.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIWX010000036.1 Salmonella enterica strain PNUSAS366707 SAMN36715168-rid18887893.guided.18, whole genome shotgun sequence	4311..4748	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIWX010000020.1 Salmonella enterica strain PNUSAS366707 SAMN36715168-rid18887893.denovo.23, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNIWX010000025.1 Salmonella enterica strain PNUSAS366707 SAMN36715168-rid18887893.denovo.28, whole genome shotgun sequence	2453..2714																																																avrA	ABNIWX010000002.1	553309..554178	99.54	870	0						
GCA_032355115.1_PDT001829421.1_genomic.fna	Salmonella_enterica	0.5138	322.356 KB	6	aroC_88,dnaN_26,hemD_30,hisD_84,purE_21,sucA_92,thrA_80	1845	61:c:z35	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_84	purE	100	100	purE_21	sucA	100	100	sucA_92	thrA	100	100	thrA_80	61	c	z35	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:c:z35		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNIWY010000010.1 Salmonella enterica strain PNUSAS366704 SAMN36715172-rid18888753.denovo.10, whole genome shotgun sequence	111586..112023	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNIWY010000050.1 Salmonella enterica strain PNUSAS366704 SAMN36715172-rid18888753.guided.27, whole genome shotgun sequence	10135..10572	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIWY010000002.1	154692..155561	96.552	870	0						
GCA_032355175.1_PDT001475035.2_genomic.fna	Salmonella_enterica	0.5215	329.997 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col3M	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNIXA010000001.1 Salmonella enterica strain III-MAP16-1 SAMN31581328-rid18887483.denovo.01, whole genome shotgun sequence	177323..177760	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNIXA010000026.1 Salmonella enterica strain III-MAP16-1 SAMN31581328-rid18887483.guided.15, whole genome shotgun sequence	20763..21200	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNIXA010000021.1 Salmonella enterica strain III-MAP16-1 SAMN31581328-rid18887483.denovo.24, whole genome shotgun sequence	1800..1930	enterobacteriales	Col3M	99.36	157 / 157	ABNIXA010000024.1 Salmonella enterica strain III-MAP16-1 SAMN31581328-rid18887483.denovo.27, whole genome shotgun sequence	231..387																																																avrA	ABNIXA010000002.1	515739..516608	99.77	870	0						
GCA_032355195.1_PDT001829417.1_genomic.fna	Salmonella_enterica	0.5218	712.044 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIXC010000001.1 Salmonella enterica strain W229-11-1 SAMN36715162-rid18887453.denovo.01, whole genome shotgun sequence	594804..595241	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIXC010000019.1 Salmonella enterica strain W229-11-1 SAMN36715162-rid18887453.guided.12, whole genome shotgun sequence	12476..12913	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIXC010000003.1	560524..561394	99.656	871	0						
GCA_032355215.1_PDT001829413.1_genomic.fna	Salmonella_enterica	0.519	477.857 KB	4	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNIXD010000001.1 Salmonella enterica strain W230-2-1 SAMN36715154-rid18887813.denovo.01, whole genome shotgun sequence	164434..164871	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNIXD010000039.1 Salmonella enterica strain W230-2-1 SAMN36715154-rid18887813.guided.23, whole genome shotgun sequence	10149..10586	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIXD010000025.1 Salmonella enterica strain W230-2-1 SAMN36715154-rid18887813.denovo.29, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIXD010000041.1 Salmonella enterica strain W230-2-1 SAMN36715154-rid18887813.guided.28, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIXD010000025.1 Salmonella enterica strain W230-2-1 SAMN36715154-rid18887813.denovo.29, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIXD010000041.1 Salmonella enterica strain W230-2-1 SAMN36715154-rid18887813.guided.28, whole genome shotgun sequence	2334..2464																																																avrA	ABNIXD010000009.1	137682..138551	99.31	870	0						
GCA_032355235.1_PDT001829409.1_genomic.fna	Salmonella_enterica	0.522	711.945 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIXG010000001.1 Salmonella enterica strain W230-1-1 SAMN36715158-rid18887803.denovo.01, whole genome shotgun sequence	645017..645454	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIXG010000022.1 Salmonella enterica strain W230-1-1 SAMN36715158-rid18887803.guided.16, whole genome shotgun sequence	2392..2829	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIXG010000003.1	560425..561295	99.656	871	0						
GCA_032355255.1_PDT001829410.1_genomic.fna	Salmonella_enterica	0.5197	459.987 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_795,sucA_16,thrA_4	4557	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_795	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNIXF010000001.1 Salmonella enterica strain W229-16-1 SAMN36715157-rid18887423.denovo.01, whole genome shotgun sequence	250650..251087	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNIXF010000029.1 Salmonella enterica strain W229-16-1 SAMN36715157-rid18887423.guided.25, whole genome shotgun sequence	1187..1624	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	95.79	261 / 262	ABNIXF010000009.1 Salmonella enterica strain W229-16-1 SAMN36715157-rid18887423.denovo.09, whole genome shotgun sequence	52019..52277																																																						avrA	ABNIXF010000011.1	106982..107850	99.425	870	0						
GCA_032355275.1_PDT001829412.1_genomic.fna	Salmonella_enterica	0.5222	180.549 KB	7	aroC_217,dnaN_208,hemD_13,hisD_249,purE_218,sucA_23,thrA_4	751	13:d:1,7	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_217	dnaN	100	100	dnaN_208	hemD	100	100	hemD_13	hisD	100	100	hisD_249	purE	100	100	purE_218	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Grumpensis		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNIXE010000001.1 Salmonella enterica strain W229-12-1 SAMN36715159-rid18887443.denovo.01, whole genome shotgun sequence	37896..38333	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNIXE010000056.1 Salmonella enterica strain W229-12-1 SAMN36715159-rid18887443.guided.36, whole genome shotgun sequence	9857..10294	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNIXE010000010.1 Salmonella enterica strain W229-12-1 SAMN36715159-rid18887443.denovo.10, whole genome shotgun sequence	162231..162653	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNIXE010000058.1 Salmonella enterica strain W229-12-1 SAMN36715159-rid18887443.guided.44, whole genome shotgun sequence	300..722	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032355365.1_PDT001829401.1_genomic.fna	Salmonella_enterica	0.5203	270.802 KB	6	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	5	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,fosA7,fosA7,sul2,sul2,tet(A),tet(A)	2	gyrA_p.S83F,parC_p.T57S	4	Col(pHAD28),ColRNAI,ColpVC,IncC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNIXJ010000001.1 Salmonella enterica strain W223-10-1 SAMN36715146-rid18887383.denovo.01, whole genome shotgun sequence	145013..145450	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNIXJ010000040.1 Salmonella enterica strain W223-10-1 SAMN36715146-rid18887383.guided.31, whole genome shotgun sequence	6032..6469	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNIXJ010000020.1 Salmonella enterica strain W223-10-1 SAMN36715146-rid18887383.denovo.20, whole genome shotgun sequence	9032..10177	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNIXJ010000036.1 Salmonella enterica strain W223-10-1 SAMN36715146-rid18887383.guided.27, whole genome shotgun sequence	4554..5699	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	fosA7	100	423/423	ABNIXJ010000010.1 Salmonella enterica strain W223-10-1 SAMN36715146-rid18887383.denovo.10, whole genome shotgun sequence	166241..166663	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNIXJ010000035.1 Salmonella enterica strain W223-10-1 SAMN36715146-rid18887383.guided.25, whole genome shotgun sequence	28857..29279	Fosfomycin	LAPJ01000014	sul2	100	816/816	ABNIXJ010000016.1 Salmonella enterica strain W223-10-1 SAMN36715146-rid18887383.denovo.16, whole genome shotgun sequence	70375..71190	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIXJ010000039.1 Salmonella enterica strain W223-10-1 SAMN36715146-rid18887383.guided.30, whole genome shotgun sequence	685..1500	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNIXJ010000016.1 Salmonella enterica strain W223-10-1 SAMN36715146-rid18887383.denovo.16, whole genome shotgun sequence	66999..68198	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNIXJ010000039.1 Salmonella enterica strain W223-10-1 SAMN36715146-rid18887383.guided.30, whole genome shotgun sequence	3677..4876	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNIXJ010000028.1 Salmonella enterica strain W223-10-1 SAMN36715146-rid18887383.denovo.34, whole genome shotgun sequence	1271..1401	enterobacteriales	ColRNAI	90.08	131 / 130	ABNIXJ010000026.1 Salmonella enterica strain W223-10-1 SAMN36715146-rid18887383.denovo.32, whole genome shotgun sequence	4021..4151		enterobacteriales	ColpVC	98.96	193 / 193	ABNIXJ010000027.1 Salmonella enterica strain W223-10-1 SAMN36715146-rid18887383.denovo.33, whole genome shotgun sequence	805..997		enterobacteriales	IncC	100	417 / 417	ABNIXJ010000016.1 Salmonella enterica strain W223-10-1 SAMN36715146-rid18887383.denovo.16, whole genome shotgun sequence	24993..25409																																		avrA	ABNIXJ010000025.1	28833..29702	99.54	870	0						
GCA_032355385.1_PDT001829400.1_genomic.fna	Salmonella_enterica	0.5216	226.822 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNIXK010000012.1 Salmonella enterica strain W230-3-1 SAMN36715144-rid18887373.denovo.12, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNIXK010000038.1 Salmonella enterica strain W230-3-1 SAMN36715144-rid18887373.guided.34, whole genome shotgun sequence	4244..4681	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIXK010000004.1	131918..132787	98.966	870	0						
GCA_032355425.1_PDT001829402.1_genomic.fna	Salmonella_enterica	0.5214	457.156 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pHCM2)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIXI010000001.1 Salmonella enterica strain W222-21-1 SAMN36715147-rid18887393.denovo.01, whole genome shotgun sequence	862118..862555	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIXI010000022.1 Salmonella enterica strain W222-21-1 SAMN36715147-rid18887393.guided.14, whole genome shotgun sequence	20529..20966	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	99.31	875 / 875	ABNIXI010000011.1 Salmonella enterica strain W222-21-1 SAMN36715147-rid18887393.denovo.11, whole genome shotgun sequence	82686..83560																																																						avrA	ABNIXI010000002.1	514923..515793	99.656	871	0						
GCA_032355445.1_PDT001829405.1_genomic.fna	Salmonella_enterica	0.5216	600.705 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pHCM2)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIXH010000001.1 Salmonella enterica strain W222-26-1 SAMN36715151-rid18887403.denovo.01, whole genome shotgun sequence	385222..385659	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIXH010000021.1 Salmonella enterica strain W222-26-1 SAMN36715151-rid18887403.guided.18, whole genome shotgun sequence	5279..5716	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	99.31	875 / 875	ABNIXH010000010.1 Salmonella enterica strain W222-26-1 SAMN36715151-rid18887403.denovo.10, whole genome shotgun sequence	82686..83560																																																						avrA	ABNIXH010000003.1	560486..561356	99.656	871	0						
GCA_032355465.1_PDT001829398.1_genomic.fna	Salmonella_enterica	0.5225	712.012 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIXM010000001.1 Salmonella enterica strain W230-4-1 SAMN36715143-rid18887743.denovo.01, whole genome shotgun sequence	385211..385648	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIXM010000020.1 Salmonella enterica strain W230-4-1 SAMN36715143-rid18887743.guided.15, whole genome shotgun sequence	2211..2648	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIXM010000003.1	560492..561362	99.656	871	0						
GCA_032355665.1_PDT001829390.1_genomic.fna	Salmonella_enterica	0.5219	366.635 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_547	2370	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_547	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIXT010000001.1 Salmonella enterica strain W241-12-1 SAMN36715129-rid18887323.denovo.01, whole genome shotgun sequence	449114..449551	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIXT010000040.1 Salmonella enterica strain W241-12-1 SAMN36715129-rid18887323.guided.28, whole genome shotgun sequence	6646..7083	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIXT010000011.1	95049..95918	99.195	870	0						
GCA_032355685.1_PDT001829391.1_genomic.fna	Salmonella_enterica	0.5216	292.084 KB	6	aroC_84,dnaN_76,hemD_38,hisD_16,purE_12,sucA_13,thrA_4	226	6,14:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pHCM2)	aroC	100	100	aroC_84	dnaN	100	100	dnaN_76	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	6,14	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Carrau		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIXS010000001.1 Salmonella enterica strain W226-7-1 SAMN36715130-rid18887333.denovo.01, whole genome shotgun sequence	256880..257317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIXS010000040.1 Salmonella enterica strain W226-7-1 SAMN36715130-rid18887333.guided.30, whole genome shotgun sequence	25828..26265	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	98.4	875 / 875	ABNIXS010000015.1 Salmonella enterica strain W226-7-1 SAMN36715130-rid18887333.denovo.15, whole genome shotgun sequence	24056..24930																																																						avrA	ABNIXS010000002.1	150117..150985	98.851	870	0						
GCA_032355715.1_PDT001829388.1_genomic.fna	Salmonella_enterica	0.5195	336.096 KB	6	aroC_358,dnaN_1235,hemD_25,hisD_625,purE_161,sucA_16,thrA_4	9484	8:c:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(Yp),IncFII(pEH01)	aroC	100	100	aroC_358	dnaN	100	100	dnaN_1235	hemD	100	100	hemD_25	hisD	100	100	hisD_625	purE	100	100	purE_161	sucA	100	100	sucA_16	thrA	100	100	thrA_4	8	c	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Santiago or Belem	The predicted serotypes share the same general formula: 8:c:e,n,x and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIXU010000002.1 Salmonella enterica strain W222-18-1 SAMN36715128-rid18887693.denovo.02, whole genome shotgun sequence	107999..108436	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIXU010000035.1 Salmonella enterica strain W222-18-1 SAMN36715128-rid18887693.guided.25, whole genome shotgun sequence	4432..4869	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	93.91	230 / 230	ABNIXU010000017.1 Salmonella enterica strain W222-18-1 SAMN36715128-rid18887693.denovo.17, whole genome shotgun sequence	3577..3806	enterobacteriales	IncFII(pEH01)	99.45	726 / 726	ABNIXU010000022.1 Salmonella enterica strain W222-18-1 SAMN36715128-rid18887693.denovo.22, whole genome shotgun sequence	8724..9449																																																avrA	ABNIXU010000007.1	134427..135296	98.851	870	0						
GCA_032355765.1_PDT001829387.1_genomic.fna	Salmonella_enterica	0.5202	235.169 KB	8	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	5	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,fosA7,fosA7,sul2,sul2,tet(A),tet(A)	2	gyrA_p.S83F,parC_p.T57S	4	Col(pHAD28),ColRNAI,ColpVC,IncC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNIXV010000004.1 Salmonella enterica strain W223-11-1 SAMN36715127-rid18887313.denovo.04, whole genome shotgun sequence	145211..145648	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNIXV010000044.1 Salmonella enterica strain W223-11-1 SAMN36715127-rid18887313.guided.29, whole genome shotgun sequence	12609..13046	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNIXV010000027.1 Salmonella enterica strain W223-11-1 SAMN36715127-rid18887313.denovo.27, whole genome shotgun sequence	8969..10114	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNIXV010000045.1 Salmonella enterica strain W223-11-1 SAMN36715127-rid18887313.guided.32, whole genome shotgun sequence	9010..10155	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	fosA7	100	423/423	ABNIXV010000009.1 Salmonella enterica strain W223-11-1 SAMN36715127-rid18887313.denovo.09, whole genome shotgun sequence	166241..166663	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNIXV010000046.1 Salmonella enterica strain W223-11-1 SAMN36715127-rid18887313.guided.33, whole genome shotgun sequence	24837..25259	Fosfomycin	LAPJ01000014	sul2	100	816/816	ABNIXV010000016.1 Salmonella enterica strain W223-11-1 SAMN36715127-rid18887313.denovo.16, whole genome shotgun sequence	70375..71190	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIXV010000047.1 Salmonella enterica strain W223-11-1 SAMN36715127-rid18887313.guided.35, whole genome shotgun sequence	1828..2643	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNIXV010000016.1 Salmonella enterica strain W223-11-1 SAMN36715127-rid18887313.denovo.16, whole genome shotgun sequence	66999..68198	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNIXV010000047.1 Salmonella enterica strain W223-11-1 SAMN36715127-rid18887313.guided.35, whole genome shotgun sequence	4820..6019	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNIXV010000036.1 Salmonella enterica strain W223-11-1 SAMN36715127-rid18887313.denovo.42, whole genome shotgun sequence	1271..1401	enterobacteriales	ColRNAI	90.08	131 / 130	ABNIXV010000034.1 Salmonella enterica strain W223-11-1 SAMN36715127-rid18887313.denovo.40, whole genome shotgun sequence	4021..4151		enterobacteriales	ColpVC	98.96	193 / 193	ABNIXV010000035.1 Salmonella enterica strain W223-11-1 SAMN36715127-rid18887313.denovo.41, whole genome shotgun sequence	805..997		enterobacteriales	IncC	100	417 / 417	ABNIXV010000016.1 Salmonella enterica strain W223-11-1 SAMN36715127-rid18887313.denovo.16, whole genome shotgun sequence	24993..25409																																		avrA	ABNIXV010000029.1	28832..29701	99.54	870	0						
GCA_032355805.1_PDT001829385.1_genomic.fna	Salmonella_enterica	0.5197	248.951 KB	7	aroC_358,dnaN_1235,hemD_25,hisD_625,purE_161,sucA_16,thrA_4	9484	8:c:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(Yp),IncFII(pEH01)	aroC	100	100	aroC_358	dnaN	100	100	dnaN_1235	hemD	100	100	hemD_25	hisD	100	100	hisD_625	purE	100	100	purE_161	sucA	100	100	sucA_16	thrA	100	100	thrA_4	8	c	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Santiago or Belem	The predicted serotypes share the same general formula: 8:c:e,n,x and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIXW010000001.1 Salmonella enterica strain W222-14-1 SAMN36715122-rid18887303.denovo.01, whole genome shotgun sequence	107999..108436	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIXW010000038.1 Salmonella enterica strain W222-14-1 SAMN36715122-rid18887303.guided.29, whole genome shotgun sequence	3030..3467	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	93.91	230 / 230	ABNIXW010000019.1 Salmonella enterica strain W222-14-1 SAMN36715122-rid18887303.denovo.19, whole genome shotgun sequence	3577..3806	enterobacteriales	IncFII(pEH01)	99.45	726 / 726	ABNIXW010000024.1 Salmonella enterica strain W222-14-1 SAMN36715122-rid18887303.denovo.24, whole genome shotgun sequence	8724..9449																																																avrA	ABNIXW010000008.1	95308..96177	98.851	870	0						
GCA_032355845.1_PDT001829382.1_genomic.fna	Salmonella_enterica	0.5194	336.284 KB	6	aroC_358,dnaN_1235,hemD_25,hisD_625,purE_161,sucA_16,thrA_4	9484	8:c:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(Yp),IncFII(pEH01)	aroC	100	100	aroC_358	dnaN	100	100	dnaN_1235	hemD	100	100	hemD_25	hisD	100	100	hisD_625	purE	100	100	purE_161	sucA	100	100	sucA_16	thrA	100	100	thrA_4	8	c	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Santiago or Belem	The predicted serotypes share the same general formula: 8:c:e,n,x and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIXX010000002.1 Salmonella enterica strain W222-11-1 SAMN36715117-rid18887653.denovo.02, whole genome shotgun sequence	107999..108436	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIXX010000035.1 Salmonella enterica strain W222-11-1 SAMN36715117-rid18887653.guided.24, whole genome shotgun sequence	7459..7896	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	93.91	230 / 230	ABNIXX010000017.1 Salmonella enterica strain W222-11-1 SAMN36715117-rid18887653.denovo.17, whole genome shotgun sequence	3577..3806	enterobacteriales	IncFII(pEH01)	99.45	726 / 726	ABNIXX010000023.1 Salmonella enterica strain W222-11-1 SAMN36715117-rid18887653.denovo.25, whole genome shotgun sequence	8724..9449																																																avrA	ABNIXX010000007.1	134427..135296	98.851	870	0						
GCA_032355865.1_PDT001829381.1_genomic.fna	Salmonella_enterica	0.5211	456.086 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIXY010000005.1 Salmonella enterica strain PNUSAS366686 SAMN36715098-rid18887643.denovo.05, whole genome shotgun sequence	162383..162820	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIXY010000024.1 Salmonella enterica strain PNUSAS366686 SAMN36715098-rid18887643.guided.15, whole genome shotgun sequence	18515..18952	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIXY010000015.1 Salmonella enterica strain PNUSAS366686 SAMN36715098-rid18887643.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNIXY010000015.1 Salmonella enterica strain PNUSAS366686 SAMN36715098-rid18887643.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNIXY010000001.1	553497..554366	99.54	870	0						
GCA_032355885.1_PDT001829380.1_genomic.fna	Salmonella_enterica	0.5219	533.079 KB	4	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNIXZ010000001.1 Salmonella enterica strain PNUSAS366685 SAMN36715100-rid18887293.denovo.01, whole genome shotgun sequence	145118..145555	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNIXZ010000024.1 Salmonella enterica strain PNUSAS366685 SAMN36715100-rid18887293.guided.16, whole genome shotgun sequence	11168..11605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIXZ010000003.1	544767..545635	99.655	869	0						
GCA_032355905.1_PDT001829377.1_genomic.fna	Salmonella_enterica	0.5216	170.798 KB	10	aroC_20,dnaN_4,hemD_23,hisD_14,purE_16,sucA_19,thrA_140	423	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_20	dnaN	100	100	dnaN_4	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_19	thrA	100	100	thrA_140	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIYA010000012.1 Salmonella enterica strain PNUSAS366684 SAMN36715102-rid18887613.denovo.12, whole genome shotgun sequence	37880..38317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIYA010000059.1 Salmonella enterica strain PNUSAS366684 SAMN36715102-rid18887613.guided.44, whole genome shotgun sequence	1970..2407	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032355925.1_PDT001829375.1_genomic.fna	Salmonella_enterica	0.5217	208.73 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNIYB010000002.1 Salmonella enterica strain PNUSAS366687 SAMN36715096-rid18887283.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNIYB010000052.1 Salmonella enterica strain PNUSAS366687 SAMN36715096-rid18887283.guided.32, whole genome shotgun sequence	16227..16664	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNIYB010000041.1 Salmonella enterica strain PNUSAS366687 SAMN36715096-rid18887283.denovo.44, whole genome shotgun sequence	1251..1381	enterobacteriales	IncFIB(S)	100	643 / 643	ABNIYB010000016.1 Salmonella enterica strain PNUSAS366687 SAMN36715096-rid18887283.denovo.16, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	ABNIYB010000016.1 Salmonella enterica strain PNUSAS366687 SAMN36715096-rid18887283.denovo.16, whole genome shotgun sequence	30407..30668																																									avrA	ABNIYB010000008.1	98189..99057	100	869	0						
GCA_032355945.1_PDT001829373.1_genomic.fna	Salmonella_enterica	0.5152	202.177 KB	9	aroC_30*,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433*	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	IncFIB(pB171),IncFII(SARC14),IncFII(Yp),IncFII(pMET)	aroC	99.8003992015968	100	aroC_30*	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNIYD010000014.1 Salmonella enterica strain W227-5-1 SAMN36715094-rid18887583.denovo.14, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNIYD010000087.1 Salmonella enterica strain W227-5-1 SAMN36715094-rid18887583.guided.45, whole genome shotgun sequence	4349..4786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNIYD010000012.1 Salmonella enterica strain W227-5-1 SAMN36715094-rid18887583.denovo.12, whole genome shotgun sequence	20559..21201	enterobacteriales	IncFII(SARC14)	95.29	446 / 445	ABNIYD010000012.1 Salmonella enterica strain W227-5-1 SAMN36715094-rid18887583.denovo.12, whole genome shotgun sequence	130625..131069		enterobacteriales	IncFII(Yp)	90.74	216 / 230	ABNIYD010000012.1 Salmonella enterica strain W227-5-1 SAMN36715094-rid18887583.denovo.12, whole genome shotgun sequence	131330..131544		enterobacteriales	IncFII(pMET)	90.24	584 / 577	ABNIYD010000034.1 Salmonella enterica strain W227-5-1 SAMN36715094-rid18887583.denovo.35, whole genome shotgun sequence	15932..16514																																													
GCA_032355965.1_PDT001829374.1_genomic.fna	Salmonella_enterica	0.5219	295.591 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_547	2370	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_547	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIYC010000008.1 Salmonella enterica strain W241-10-1 SAMN36715104-rid18887593.denovo.08, whole genome shotgun sequence	129633..130070	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIYC010000040.1 Salmonella enterica strain W241-10-1 SAMN36715104-rid18887593.guided.28, whole genome shotgun sequence	530..967	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIYC010000012.1	95049..95918	99.195	870	0						
GCA_032356025.1_PDT001829372.1_genomic.fna	Salmonella_enterica	0.5149	97.345 KB	17	aroC_30*,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433*	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(SARC14),IncFII(Yp)	aroC	99.8003992015968	100	aroC_30*	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNIYE010000055.1 Salmonella enterica strain W227-1-1 SAMN36715107-rid18887573.denovo.056, whole genome shotgun sequence	15058..15495	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNIYE010000139.1 Salmonella enterica strain W227-1-1 SAMN36715107-rid18887573.guided.058, whole genome shotgun sequence	4349..4786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNIYE010000004.1 Salmonella enterica strain W227-1-1 SAMN36715107-rid18887573.denovo.004, whole genome shotgun sequence	20559..21201	enterobacteriales	IncFII(SARC14)	95.29	446 / 445	ABNIYE010000004.1 Salmonella enterica strain W227-1-1 SAMN36715107-rid18887573.denovo.004, whole genome shotgun sequence	130625..131069		enterobacteriales	IncFII(Yp)	90.74	216 / 230	ABNIYE010000004.1 Salmonella enterica strain W227-1-1 SAMN36715107-rid18887573.denovo.004, whole genome shotgun sequence	131330..131544																																																				
GCA_032356085.1_PDT001829370.1_genomic.fna	Salmonella_enterica	0.5205	495.201 KB	5	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	5	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,fosA7,fosA7,sul2,sul2,tet(A),tet(A)	2	gyrA_p.S83F,parC_p.T57S	4	Col(pHAD28),ColRNAI,ColpVC,IncC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNIYF010000003.1 Salmonella enterica strain W223-21-1 SAMN36715038-rid18887273.denovo.03, whole genome shotgun sequence	145296..145733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNIYF010000041.1 Salmonella enterica strain W223-21-1 SAMN36715038-rid18887273.guided.29, whole genome shotgun sequence	4668..5105	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNIYF010000020.1 Salmonella enterica strain W223-21-1 SAMN36715038-rid18887273.denovo.20, whole genome shotgun sequence	41378..42523	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNIYF010000039.1 Salmonella enterica strain W223-21-1 SAMN36715038-rid18887273.guided.27, whole genome shotgun sequence	4539..5684	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	fosA7	100	423/423	ABNIYF010000008.1 Salmonella enterica strain W223-21-1 SAMN36715038-rid18887273.denovo.08, whole genome shotgun sequence	166241..166663	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNIYF010000038.1 Salmonella enterica strain W223-21-1 SAMN36715038-rid18887273.guided.25, whole genome shotgun sequence	26141..26563	Fosfomycin	LAPJ01000014	sul2	100	816/816	ABNIYF010000014.1 Salmonella enterica strain W223-21-1 SAMN36715038-rid18887273.denovo.14, whole genome shotgun sequence	70375..71190	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIYF010000042.1 Salmonella enterica strain W223-21-1 SAMN36715038-rid18887273.guided.30, whole genome shotgun sequence	685..1500	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNIYF010000014.1 Salmonella enterica strain W223-21-1 SAMN36715038-rid18887273.denovo.14, whole genome shotgun sequence	66999..68198	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNIYF010000042.1 Salmonella enterica strain W223-21-1 SAMN36715038-rid18887273.guided.30, whole genome shotgun sequence	3677..4876	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNIYF010000030.1 Salmonella enterica strain W223-21-1 SAMN36715038-rid18887273.denovo.36, whole genome shotgun sequence	1271..1401	enterobacteriales	ColRNAI	90.08	131 / 130	ABNIYF010000027.1 Salmonella enterica strain W223-21-1 SAMN36715038-rid18887273.denovo.33, whole genome shotgun sequence	4021..4151		enterobacteriales	ColpVC	98.96	193 / 193	ABNIYF010000029.1 Salmonella enterica strain W223-21-1 SAMN36715038-rid18887273.denovo.35, whole genome shotgun sequence	805..997		enterobacteriales	IncC	100	417 / 417	ABNIYF010000014.1 Salmonella enterica strain W223-21-1 SAMN36715038-rid18887273.denovo.14, whole genome shotgun sequence	24993..25409																																		avrA	ABNIYF010000024.1	28833..29702	99.54	870	0						
GCA_032356105.1_PDT001829367.1_genomic.fna	Salmonella_enterica	0.5213	292.467 KB	6	aroC_84,dnaN_76,hemD_38,hisD_16,purE_12,sucA_13,thrA_4	226	6,14:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pHCM2)	aroC	100	100	aroC_84	dnaN	100	100	dnaN_76	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	6,14	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Carrau		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIYG010000001.1 Salmonella enterica strain W224-1-1 SAMN36715039-rid18887533.denovo.01, whole genome shotgun sequence	257292..257729	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIYG010000042.1 Salmonella enterica strain W224-1-1 SAMN36715039-rid18887533.guided.23, whole genome shotgun sequence	34052..34489	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	98.4	875 / 875	ABNIYG010000016.1 Salmonella enterica strain W224-1-1 SAMN36715039-rid18887533.denovo.16, whole genome shotgun sequence	24056..24930																																																						avrA	ABNIYG010000002.1	150117..150985	98.851	870	0						
GCA_032356125.1_PDT001829363.1_genomic.fna	Salmonella_enterica	0.5214	292.467 KB	6	aroC_84,dnaN_76,hemD_38,hisD_16,purE_12,sucA_13,thrA_4	226	6,14:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pHCM2)	aroC	100	100	aroC_84	dnaN	100	100	dnaN_76	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	6,14	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Carrau		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIYI010000001.1 Salmonella enterica strain W224-9-1 SAMN36715034-rid18887503.denovo.01, whole genome shotgun sequence	257292..257729	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIYI010000045.1 Salmonella enterica strain W224-9-1 SAMN36715034-rid18887503.guided.29, whole genome shotgun sequence	24469..24906	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	98.4	875 / 875	ABNIYI010000015.1 Salmonella enterica strain W224-9-1 SAMN36715034-rid18887503.denovo.15, whole genome shotgun sequence	24056..24930																																																						avrA	ABNIYI010000002.1	150117..150985	98.851	870	0						
GCA_032356205.1_PDT001829359.1_genomic.fna	Salmonella_enterica	0.5217	366.635 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_547	2370	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_547	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIYL010000001.1 Salmonella enterica strain W241-1-1 SAMN36715011-rid18887243.denovo.01, whole genome shotgun sequence	786713..787150	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIYL010000039.1 Salmonella enterica strain W241-1-1 SAMN36715011-rid18887243.guided.24, whole genome shotgun sequence	14303..14740	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIYL010000011.1	94857..95726	99.195	870	0						
GCA_032356385.1_PDT001829355.1_genomic.fna	Salmonella_enterica	0.5219	292.468 KB	6	aroC_84,dnaN_76,hemD_38,hisD_16,purE_12,sucA_13,thrA_4	226	6,14:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_76	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	6,14	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Carrau		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIYP010000001.1 Salmonella enterica strain W225-5-1 SAMN36715005-rid18886863.denovo.01, whole genome shotgun sequence	257616..258053	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIYP010000041.1 Salmonella enterica strain W225-5-1 SAMN36715005-rid18886863.guided.31, whole genome shotgun sequence	2584..3021	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIYP010000002.1	150117..150985	98.851	870	0						
GCA_032356995.1_PDT001829326.1_genomic.fna	Salmonella_enterica	0.5212	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIYV010000001.1 Salmonella enterica strain PNUSAS366596 SAMN36714841-rid18887043.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIYV010000026.1 Salmonella enterica strain PNUSAS366596 SAMN36714841-rid18887043.guided.14, whole genome shotgun sequence	32197..32634	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIYV010000017.1 Salmonella enterica strain PNUSAS366596 SAMN36714841-rid18887043.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNIYV010000018.1 Salmonella enterica strain PNUSAS366596 SAMN36714841-rid18887043.denovo.20, whole genome shotgun sequence	3403..3664																																																avrA	ABNIYV010000002.1	553575..554444	99.54	870	0						
GCA_032357035.1_PDT001829330.1_genomic.fna	Salmonella_enterica	0.5205	510.078 KB	3	aroC_43,dnaN_47,hemD_49,hisD_16,purE_41,sucA_15,thrA_3	241	4:d:1,7	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col156	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIYS010000001.1 Salmonella enterica strain PNUSAS366602 SAMN36714846-rid18886763.denovo.01, whole genome shotgun sequence	585522..585959	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIYS010000025.1 Salmonella enterica strain PNUSAS366602 SAMN36714846-rid18886763.guided.17, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNIYS010000016.1 Salmonella enterica strain PNUSAS366602 SAMN36714846-rid18886763.denovo.19, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNIYS010000026.1 Salmonella enterica strain PNUSAS366602 SAMN36714846-rid18886763.guided.20, whole genome shotgun sequence	920..1564	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIYS010000016.1 Salmonella enterica strain PNUSAS366602 SAMN36714846-rid18886763.denovo.19, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNIYS010000026.1 Salmonella enterica strain PNUSAS366602 SAMN36714846-rid18886763.guided.20, whole genome shotgun sequence	264..394		enterobacteriales	Col156	93.51	154 / 154	ABNIYS010000015.1 Salmonella enterica strain PNUSAS366602 SAMN36714846-rid18886763.denovo.18, whole genome shotgun sequence	3357..3510																																									avrA	ABNIYS010000003.1	162693..163562	98.966	870	0						
GCA_032357115.1_PDT001829323.1_genomic.fna	Salmonella_enterica	0.5209	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIYX010000001.1 Salmonella enterica strain PNUSAS366598 SAMN36714844-rid18886733.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIYX010000023.1 Salmonella enterica strain PNUSAS366598 SAMN36714844-rid18886733.guided.13, whole genome shotgun sequence	20586..21023	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIYX010000016.1 Salmonella enterica strain PNUSAS366598 SAMN36714844-rid18886733.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNIYX010000017.1 Salmonella enterica strain PNUSAS366598 SAMN36714844-rid18886733.denovo.20, whole genome shotgun sequence	3412..3673																																																avrA	ABNIYX010000002.1	553635..554504	99.54	870	0						
GCA_032357185.1_PDT001829309.1_genomic.fna	Salmonella_enterica	0.5212	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncL	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIYZ010000001.1 Salmonella enterica strain PNUSAS366594 SAMN36714837-rid18886973.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIYZ010000025.1 Salmonella enterica strain PNUSAS366594 SAMN36714837-rid18886973.guided.18, whole genome shotgun sequence	6731..7168	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIYZ010000017.1 Salmonella enterica strain PNUSAS366594 SAMN36714837-rid18886973.denovo.19, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNIYZ010000014.1 Salmonella enterica strain PNUSAS366594 SAMN36714837-rid18886973.denovo.14, whole genome shotgun sequence	5032..5293		enterobacteriales	IncL	95.2	666 / 661	ABNIYZ010000013.1 Salmonella enterica strain PNUSAS366594 SAMN36714837-rid18886973.denovo.13, whole genome shotgun sequence	43827..44490																																									avrA	ABNIYZ010000002.1	553426..554295	99.54	870	0						
GCA_032357205.1_PDT001829306.1_genomic.fna	Salmonella_enterica	0.521	381.697 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIZA010000002.1 Salmonella enterica strain PNUSAS366627 SAMN36714817-rid18886633.denovo.02, whole genome shotgun sequence	482402..482839	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIZA010000024.1 Salmonella enterica strain PNUSAS366627 SAMN36714817-rid18886633.guided.17, whole genome shotgun sequence	15878..16315	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032357225.1_PDT001829312.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIYY010000001.1 Salmonella enterica strain PNUSAS366601 SAMN36714847-rid18886983.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIYY010000025.1 Salmonella enterica strain PNUSAS366601 SAMN36714847-rid18886983.guided.15, whole genome shotgun sequence	25423..25860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIYY010000018.1 Salmonella enterica strain PNUSAS366601 SAMN36714847-rid18886983.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNIYY010000019.1 Salmonella enterica strain PNUSAS366601 SAMN36714847-rid18886983.denovo.21, whole genome shotgun sequence	3403..3664																																																avrA	ABNIYY010000002.1	553636..554505	99.54	870	0						
GCA_032357465.1_PDT001913115.1_genomic.fna	Salmonella_enterica	0.5216	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIZH010000001.1 Salmonella enterica strain PNUSAS388263 SAMN37666052-rid19588443.denovo.01, whole genome shotgun sequence	800775..801212	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIZH010000002.1	129869..130738	98.966	870	0						
GCA_032357505.1_PDT001913109.1_genomic.fna	Salmonella_enterica	0.5195	288.744 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	4	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIZI010000001.1 Salmonella enterica strain PNUSAS388254 SAMN37666030-rid19588973.denovo.01, whole genome shotgun sequence	486024..486461	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIZI010000058.1 Salmonella enterica strain PNUSAS388254 SAMN37666030-rid19588973.guided.43, whole genome shotgun sequence	1178..1615	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNIZI010000008.1 Salmonella enterica strain PNUSAS388254 SAMN37666030-rid19588973.denovo.08, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNIZI010000057.1 Salmonella enterica strain PNUSAS388254 SAMN37666030-rid19588973.guided.42, whole genome shotgun sequence	2345..2767	Fosfomycin	LAPJ01000014	sul2	100	816/816	ABNIZI010000036.1 Salmonella enterica strain PNUSAS388254 SAMN37666030-rid19588973.denovo.37, whole genome shotgun sequence	2652..3467	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIZI010000054.1 Salmonella enterica strain PNUSAS388254 SAMN37666030-rid19588973.guided.38, whole genome shotgun sequence	6210..7025	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNIZI010000037.1 Salmonella enterica strain PNUSAS388254 SAMN37666030-rid19588973.denovo.41, whole genome shotgun sequence	1203..2408	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNIZI010000056.1 Salmonella enterica strain PNUSAS388254 SAMN37666030-rid19588973.guided.40, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIZI010000020.1	64444..65313	99.195	870	0						
GCA_032357525.1_PDT001913122.1_genomic.fna	Salmonella_enterica	0.5211	278.344 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNIZF010000001.1 Salmonella enterica strain PNUSAS388247 SAMN37666050-rid19588503.denovo.01, whole genome shotgun sequence	486073..486510	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNIZF010000051.1 Salmonella enterica strain PNUSAS388247 SAMN37666050-rid19588503.guided.34, whole genome shotgun sequence	1739..2176	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNIZF010000033.1 Salmonella enterica strain PNUSAS388247 SAMN37666050-rid19588503.denovo.37, whole genome shotgun sequence	423..1628	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNIZF010000052.1 Salmonella enterica strain PNUSAS388247 SAMN37666050-rid19588503.guided.36, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABNIZF010000002.1	540741..541610	99.885	870	0						
GCA_032357545.1_PDT001913102.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNIZK010000001.1 Salmonella enterica strain PNUSAS388244 SAMN37666036-rid19588343.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNIZK010000022.1 Salmonella enterica strain PNUSAS388244 SAMN37666036-rid19588343.guided.15, whole genome shotgun sequence	2761..3198	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNIZK010000012.1 Salmonella enterica strain PNUSAS388244 SAMN37666036-rid19588343.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNIZK010000012.1 Salmonella enterica strain PNUSAS388244 SAMN37666036-rid19588343.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABNIZK010000002.1	553636..554505	99.54	870	0						
GCA_032357585.1_PDT001913106.1_genomic.fna	Salmonella_enterica	0.5191	301.141 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	4	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIZJ010000001.1 Salmonella enterica strain PNUSAS388262 SAMN37666035-rid19588373.denovo.01, whole genome shotgun sequence	486024..486461	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIZJ010000052.1 Salmonella enterica strain PNUSAS388262 SAMN37666035-rid19588373.guided.22, whole genome shotgun sequence	44275..44712	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNIZJ010000009.1 Salmonella enterica strain PNUSAS388262 SAMN37666035-rid19588373.denovo.09, whole genome shotgun sequence	27818..28240	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNIZJ010000054.1 Salmonella enterica strain PNUSAS388262 SAMN37666035-rid19588373.guided.32, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014	sul2	100	816/816	ABNIZJ010000033.1 Salmonella enterica strain PNUSAS388262 SAMN37666035-rid19588373.denovo.38, whole genome shotgun sequence	2652..3467	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNIZJ010000056.1 Salmonella enterica strain PNUSAS388262 SAMN37666035-rid19588373.guided.37, whole genome shotgun sequence	12911..13726	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNIZJ010000034.1 Salmonella enterica strain PNUSAS388262 SAMN37666035-rid19588373.denovo.40, whole genome shotgun sequence	1203..2408	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNIZJ010000057.1 Salmonella enterica strain PNUSAS388262 SAMN37666035-rid19588373.guided.39, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIZJ010000018.1	64444..65313	99.195	870	0						
GCA_032357625.1_PDT001913096.1_genomic.fna	Salmonella_enterica	0.5211	695.948 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIZO010000001.1 Salmonella enterica strain PNUSAS388235 SAMN37666025-rid19588293.denovo.01, whole genome shotgun sequence	642673..643110	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIZO010000023.1 Salmonella enterica strain PNUSAS388235 SAMN37666025-rid19588293.guided.15, whole genome shotgun sequence	13556..13993	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032357645.1_PDT001913100.1_genomic.fna	Salmonella_enterica	0.5206	430.003 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIZM010000001.1 Salmonella enterica strain PNUSAS388239 SAMN37666034-rid19588323.denovo.01, whole genome shotgun sequence	561438..561875	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIZM010000029.1 Salmonella enterica strain PNUSAS388239 SAMN37666034-rid19588323.guided.20, whole genome shotgun sequence	3308..3745	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIZM010000011.1	106090..106958	99.195	870	0						
GCA_032357665.1_PDT001913101.1_genomic.fna	Salmonella_enterica	0.5217	521.113 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNIZL010000001.1 Salmonella enterica strain PNUSAS388250 SAMN37666024-rid19588333.denovo.01, whole genome shotgun sequence	884388..884825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNIZL010000023.1 Salmonella enterica strain PNUSAS388250 SAMN37666024-rid19588333.guided.16, whole genome shotgun sequence	5140..5577	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIZL010000002.1	594060..594929	99.77	870	0						
GCA_032357705.1_PDT001913088.1_genomic.fna	Salmonella_enterica	0.5215	241.123 KB	7	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNIZP010000010.1 Salmonella enterica strain PNUSAS388652 SAMN37666014-rid19588233.denovo.10, whole genome shotgun sequence	167427..167864	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNIZP010000043.1 Salmonella enterica strain PNUSAS388652 SAMN37666014-rid19588233.guided.34, whole genome shotgun sequence	6496..6933	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.94	377 / 377	ABNIZP010000025.1 Salmonella enterica strain PNUSAS388652 SAMN37666014-rid19588233.denovo.25, whole genome shotgun sequence	6729..7105																																																																	
GCA_032357725.1_PDT001913091.1_genomic.fna	Salmonella_enterica	0.522	376.501 KB	6	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIZN010000006.1 Salmonella enterica strain PNUSAS388656 SAMN37666019-rid19588253.denovo.06, whole genome shotgun sequence	226081..226518	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIZN010000031.1 Salmonella enterica strain PNUSAS388656 SAMN37666019-rid19588253.guided.24, whole genome shotgun sequence	15370..15807	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIZN010000008.1	174537..175406	99.77	870	0						
GCA_032357795.1_PDT001913068.1_genomic.fna	Salmonella_enterica	0.5213	465.912 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIZQ010000001.1 Salmonella enterica strain PNUSAS388646 SAMN37664593-rid19588103.denovo.01, whole genome shotgun sequence	560719..561156	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIZQ010000030.1 Salmonella enterica strain PNUSAS388646 SAMN37664593-rid19588103.guided.14, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIZQ010000009.1	175681..176549	99.195	870	0						
GCA_032357815.1_PDT001913063.1_genomic.fna	Salmonella_enterica	0.5214	465.92 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIZR010000001.1 Salmonella enterica strain PNUSAS388647 SAMN37664595-rid19588073.denovo.01, whole genome shotgun sequence	560095..560532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIZR010000029.1 Salmonella enterica strain PNUSAS388647 SAMN37664595-rid19588073.guided.19, whole genome shotgun sequence	9389..9826	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIZR010000010.1	93870..94738	99.195	870	0						
GCA_032357925.1_PDT001913045.1_genomic.fna	Salmonella_enterica	0.5222	610.616 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNIZW010000001.1 Salmonella enterica strain PNUSAS388591 SAMN37664567-rid19587953.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNIZW010000022.1 Salmonella enterica strain PNUSAS388591 SAMN37664567-rid19587953.guided.16, whole genome shotgun sequence	3296..3733	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIZW010000002.1	515763..516633	99.656	871	0						
GCA_032357995.1_PDT001913038.1_genomic.fna	Salmonella_enterica	0.5211	466.26 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNIZX010000001.1 Salmonella enterica strain PNUSAS388582 SAMN37664573-rid19587893.denovo.01, whole genome shotgun sequence	603404..603841	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNIZX010000025.1 Salmonella enterica strain PNUSAS388582 SAMN37664573-rid19587893.guided.13, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNIZX010000009.1	140203..141071	99.195	870	0						
GCA_032358085.1_PDT001912983.1_genomic.fna	Salmonella_enterica	0.5209	424.881 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJAA010000001.1 Salmonella enterica strain PNUSAS388356 SAMN37664114-rid19587453.denovo.01, whole genome shotgun sequence	645054..645491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJAA010000023.1 Salmonella enterica strain PNUSAS388356 SAMN37664114-rid19587453.guided.16, whole genome shotgun sequence	20585..21022	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJAA010000002.1	514705..515573	99.655	870	0						
GCA_032358595.1_PDT001912976.1_genomic.fna	Salmonella_enterica	0.5217	401.15 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJAC010000001.1 Salmonella enterica strain PNUSAS388362 SAMN37664120-rid19587403.denovo.01, whole genome shotgun sequence	787208..787645	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJAC010000037.1 Salmonella enterica strain PNUSAS388362 SAMN37664120-rid19587403.guided.25, whole genome shotgun sequence	3923..4360	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJAC010000008.1	140203..141071	99.195	870	0						
GCA_032358615.1_PDT001912979.1_genomic.fna	Salmonella_enterica	0.5226	367.996 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJAB010000001.1 Salmonella enterica strain PNUSAS388359 SAMN37664117-rid19587423.denovo.01, whole genome shotgun sequence	612850..613287	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJAB010000032.1 Salmonella enterica strain PNUSAS388359 SAMN37664117-rid19587423.guided.21, whole genome shotgun sequence	9952..10389	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJAB010000002.1	149828..150697	99.655	870	0						
GCA_032358635.1_PDT001912962.1_genomic.fna	Salmonella_enterica	0.5222	613.244 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJAG010000001.1 Salmonella enterica strain PNUSAS388354 SAMN37664112-rid19588613.denovo.01, whole genome shotgun sequence	635545..635982	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJAG010000020.1 Salmonella enterica strain PNUSAS388354 SAMN37664112-rid19588613.guided.16, whole genome shotgun sequence	5243..5680	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJAG010000002.1	654496..655366	99.656	871	0						
GCA_032358655.1_PDT001912968.1_genomic.fna	Salmonella_enterica	0.5199	226.588 KB	8	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_58,thrA_4	239	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_4	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJAE010000006.1 Salmonella enterica strain PNUSAS388373 SAMN37664097-rid19587333.denovo.006, whole genome shotgun sequence	206776..207213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJAE010000126.1 Salmonella enterica strain PNUSAS388373 SAMN37664097-rid19587333.guided.033, whole genome shotgun sequence	2186..2623	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNJAE010000030.1 Salmonella enterica strain PNUSAS388373 SAMN37664097-rid19587333.denovo.031, whole genome shotgun sequence	11456..12098																																																																	
GCA_032358675.1_PDT001912975.1_genomic.fna	Salmonella_enterica	0.5219	292.049 KB	6	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJAD010000004.1 Salmonella enterica strain PNUSAS388558 SAMN37664142-rid19587393.denovo.04, whole genome shotgun sequence	136641..137078	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJAD010000026.1 Salmonella enterica strain PNUSAS388558 SAMN37664142-rid19587393.guided.21, whole genome shotgun sequence	22015..22452	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJAD010000001.1	541401..542267	99.08	870	0						
GCA_032358815.1_PDT001912959.1_genomic.fna	Salmonella_enterica	0.5213	390.321 KB	4	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJAF010000001.1 Salmonella enterica strain PNUSAS388357 SAMN37664115-rid19587273.denovo.01, whole genome shotgun sequence	498726..499163	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJAF010000029.1 Salmonella enterica strain PNUSAS388357 SAMN37664115-rid19587273.guided.20, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032358855.1_PDT001829324.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJAJ010000001.1 Salmonella enterica strain PNUSAS366603 SAMN36714845-rid18887033.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJAJ010000028.1 Salmonella enterica strain PNUSAS366603 SAMN36714845-rid18887033.guided.16, whole genome shotgun sequence	2213..2650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJAJ010000019.1 Salmonella enterica strain PNUSAS366603 SAMN36714845-rid18887033.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNJAJ010000020.1 Salmonella enterica strain PNUSAS366603 SAMN36714845-rid18887033.denovo.23, whole genome shotgun sequence	3392..3653																																																avrA	ABNJAJ010000002.1	553575..554444	99.54	870	0						
GCA_032358875.1_PDT001829322.1_genomic.fna	Salmonella_enterica	0.52	171.828 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNJAK010000010.1 Salmonella enterica strain PNUSAS366597 SAMN36714840-rid18887023.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNJAK010000055.1 Salmonella enterica strain PNUSAS366597 SAMN36714840-rid18887023.guided.36, whole genome shotgun sequence	10647..11081	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032358975.1_PDT001829320.1_genomic.fna	Salmonella_enterica	0.5218	263.453 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJAM010000001.1 Salmonella enterica strain PNUSAS366600 SAMN36714843-rid18886713.denovo.01, whole genome shotgun sequence	460175..460612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJAM010000040.1 Salmonella enterica strain PNUSAS366600 SAMN36714843-rid18886713.guided.34, whole genome shotgun sequence	3234..3671	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNJAM010000017.1 Salmonella enterica strain PNUSAS366600 SAMN36714843-rid18886713.denovo.17, whole genome shotgun sequence	66928..68133	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJAM010000039.1 Salmonella enterica strain PNUSAS366600 SAMN36714843-rid18886713.guided.30, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJAM010000017.1 Salmonella enterica strain PNUSAS366600 SAMN36714843-rid18886713.denovo.17, whole genome shotgun sequence	74519..74660	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJAM010000039.1 Salmonella enterica strain PNUSAS366600 SAMN36714843-rid18886713.guided.30, whole genome shotgun sequence	3169..3310																																																avrA	ABNJAM010000005.1	150022..150891	99.655	870	0						
GCA_032359015.1_PDT001829316.1_genomic.fna	Salmonella_enterica	0.5222	474.019 KB	3	aroC_16,dnaN_16,hemD_20,hisD_1044,purE_8,sucA_12,thrA_18	4856	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_1044	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJAO010000001.1 Salmonella enterica strain PNUSAS366604 SAMN36714854-rid18886693.denovo.01, whole genome shotgun sequence	370160..370597	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJAO010000025.1 Salmonella enterica strain PNUSAS366604 SAMN36714854-rid18886693.guided.19, whole genome shotgun sequence	18102..18539	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJAO010000002.1	182060..182926	98.966	870	0						
GCA_032359035.1_PDT001829317.1_genomic.fna	Salmonella_enterica	0.5208	290.326 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJAN010000011.1 Salmonella enterica strain PNUSAS366595 SAMN36714839-rid18887003.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJAN010000043.1 Salmonella enterica strain PNUSAS366595 SAMN36714839-rid18887003.guided.26, whole genome shotgun sequence	9944..10381	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJAN010000019.1 Salmonella enterica strain PNUSAS366595 SAMN36714839-rid18887003.denovo.19, whole genome shotgun sequence	34957..35490																																																						avrA	ABNJAN010000001.1	187683..188549	98.966	870	0						
GCA_032359055.1_PDT001829321.1_genomic.fna	Salmonella_enterica	0.5225	531.5 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNJAL010000001.1 Salmonella enterica strain PNUSAS366593 SAMN36714836-rid18886723.denovo.01, whole genome shotgun sequence	499242..499679	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJAL010000017.1 Salmonella enterica strain PNUSAS366593 SAMN36714836-rid18886723.denovo.21, whole genome shotgun sequence	548..1384	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJAL010000017.1 Salmonella enterica strain PNUSAS366593 SAMN36714836-rid18886723.denovo.21, whole genome shotgun sequence	1384..2187	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	ABNJAL010000022.1 Salmonella enterica strain PNUSAS366593 SAMN36714836-rid18886723.guided.16, whole genome shotgun sequence	20588..21025	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJAL010000025.1 Salmonella enterica strain PNUSAS366593 SAMN36714836-rid18886723.guided.20, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJAL010000025.1 Salmonella enterica strain PNUSAS366593 SAMN36714836-rid18886723.guided.20, whole genome shotgun sequence	5879..6682	Streptomycin	AF321551	blaTEM-1A	100	861/861	ABNJAL010000017.1 Salmonella enterica strain PNUSAS366593 SAMN36714836-rid18886723.denovo.21, whole genome shotgun sequence	3225..4085	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNJAL010000025.1 Salmonella enterica strain PNUSAS366593 SAMN36714836-rid18886723.guided.20, whole genome shotgun sequence	3981..4841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	ABNJAL010000015.1 Salmonella enterica strain PNUSAS366593 SAMN36714836-rid18886723.denovo.15, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJAL010000027.1 Salmonella enterica strain PNUSAS366593 SAMN36714836-rid18886723.guided.23, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNJAL010000017.1 Salmonella enterica strain PNUSAS366593 SAMN36714836-rid18886723.denovo.21, whole genome shotgun sequence	2248..3063	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNJAL010000025.1 Salmonella enterica strain PNUSAS366593 SAMN36714836-rid18886723.guided.20, whole genome shotgun sequence	5003..5818	Sulfamethoxazole	AY034138	tet(A)	100	1226/1275	ABNJAL010000018.1 Salmonella enterica strain PNUSAS366593 SAMN36714836-rid18886723.denovo.25, whole genome shotgun sequence	692..1917	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	ABNJAL010000026.1 Salmonella enterica strain PNUSAS366593 SAMN36714836-rid18886723.guided.22, whole genome shotgun sequence	788..1987	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABNJAL010000028.1 Salmonella enterica strain PNUSAS366593 SAMN36714836-rid18886723.guided.24, whole genome shotgun sequence	713..1987	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNJAL010000015.1 Salmonella enterica strain PNUSAS366593 SAMN36714836-rid18886723.denovo.15, whole genome shotgun sequence	11449..11699																																																						avrA	ABNJAL010000003.1	130389..131258	99.54	870	0						
GCA_032359155.1_PDT001829314.1_genomic.fna	Salmonella_enterica	0.5197	324.076 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1C,blaTEM-1C,sul2,sul2,tet(A),tet(A)	0		4	Col(pHAD28),IncC,IncFII(pCoo),IncX1,IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJAQ010000003.1 Salmonella enterica strain PNUSAS366599 SAMN36714842-rid18886993.denovo.03, whole genome shotgun sequence	34939..35376	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJAQ010000053.1 Salmonella enterica strain PNUSAS366599 SAMN36714842-rid18886993.guided.39, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	blaTEM-1C	100	861/861	ABNJAQ010000020.1 Salmonella enterica strain PNUSAS366599 SAMN36714842-rid18886993.denovo.20, whole genome shotgun sequence	2393..3253	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1C	100	861/861	ABNJAQ010000052.1 Salmonella enterica strain PNUSAS366599 SAMN36714842-rid18886993.guided.38, whole genome shotgun sequence	10534..11394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	sul2	100	816/816	ABNJAQ010000024.1 Salmonella enterica strain PNUSAS366599 SAMN36714842-rid18886993.denovo.24, whole genome shotgun sequence	11572..12387	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNJAQ010000051.1 Salmonella enterica strain PNUSAS366599 SAMN36714842-rid18886993.guided.35, whole genome shotgun sequence	3114..3929	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNJAQ010000024.1 Salmonella enterica strain PNUSAS366599 SAMN36714842-rid18886993.denovo.24, whole genome shotgun sequence	14564..15763	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJAQ010000051.1 Salmonella enterica strain PNUSAS366599 SAMN36714842-rid18886993.guided.35, whole genome shotgun sequence	6106..7305	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNJAQ010000038.1 Salmonella enterica strain PNUSAS366599 SAMN36714842-rid18886993.denovo.43, whole genome shotgun sequence	371..501	enterobacteriales	IncC	100	417 / 417	ABNJAQ010000024.1 Salmonella enterica strain PNUSAS366599 SAMN36714842-rid18886993.denovo.24, whole genome shotgun sequence	57353..57769		enterobacteriales	IncFII(pCoo)	95.06	263 / 262	ABNJAQ010000020.1 Salmonella enterica strain PNUSAS366599 SAMN36714842-rid18886993.denovo.20, whole genome shotgun sequence	17621..17880		enterobacteriales	IncX1	98.93	374 / 374	ABNJAQ010000030.1 Salmonella enterica strain PNUSAS366599 SAMN36714842-rid18886993.denovo.30, whole genome shotgun sequence	32011..32384		enterobacteriales	IncX1	94.65	374 / 374	ABNJAQ010000031.1 Salmonella enterica strain PNUSAS366599 SAMN36714842-rid18886993.denovo.31, whole genome shotgun sequence	2952..3325																											avrA	ABNJAQ010000007.1	149678..150547	99.885	870	0						
GCA_032359175.1_PDT001829310.1_genomic.fna	Salmonella_enterica	0.5208	213.146 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		1	IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJAS010000001.1 Salmonella enterica strain PNUSAS366592 SAMN36714838-rid18886653.denovo.01, whole genome shotgun sequence	458966..459403	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJAS010000021.1 Salmonella enterica strain PNUSAS366592 SAMN36714838-rid18886653.denovo.21, whole genome shotgun sequence	80667..81503	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJAS010000021.1 Salmonella enterica strain PNUSAS366592 SAMN36714838-rid18886653.denovo.21, whole genome shotgun sequence	79864..80667	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNJAS010000054.1 Salmonella enterica strain PNUSAS366592 SAMN36714838-rid18886653.guided.40, whole genome shotgun sequence	4793..5629	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJAS010000054.1 Salmonella enterica strain PNUSAS366592 SAMN36714838-rid18886653.guided.40, whole genome shotgun sequence	3990..4793	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNJAS010000055.1 Salmonella enterica strain PNUSAS366592 SAMN36714838-rid18886653.guided.42, whole genome shotgun sequence	826..1263	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNJAS010000021.1 Salmonella enterica strain PNUSAS366592 SAMN36714838-rid18886653.denovo.21, whole genome shotgun sequence	49502..50647	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNJAS010000051.1 Salmonella enterica strain PNUSAS366592 SAMN36714838-rid18886653.guided.31, whole genome shotgun sequence	25227..26372	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNJAS010000021.1 Salmonella enterica strain PNUSAS366592 SAMN36714838-rid18886653.denovo.21, whole genome shotgun sequence	78988..79803	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNJAS010000054.1 Salmonella enterica strain PNUSAS366592 SAMN36714838-rid18886653.guided.40, whole genome shotgun sequence	3114..3929	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNJAS010000021.1 Salmonella enterica strain PNUSAS366592 SAMN36714838-rid18886653.denovo.21, whole genome shotgun sequence	82764..84038	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJAS010000054.1 Salmonella enterica strain PNUSAS366592 SAMN36714838-rid18886653.guided.40, whole genome shotgun sequence	6890..8164	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncC	100	417 / 417	ABNJAS010000026.1 Salmonella enterica strain PNUSAS366592 SAMN36714838-rid18886653.denovo.26, whole genome shotgun sequence	17493..17909																																																						avrA	ABNJAS010000003.1	174926..175795	99.885	870	0						
GCA_032359475.1_PDT001913112.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJAZ010000001.1 Salmonella enterica strain PNUSAS388253 SAMN37666044-rid19588423.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJAZ010000024.1 Salmonella enterica strain PNUSAS388253 SAMN37666044-rid19588423.guided.14, whole genome shotgun sequence	34044..34481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJAZ010000012.1 Salmonella enterica strain PNUSAS388253 SAMN37666044-rid19588423.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNJAZ010000016.1 Salmonella enterica strain PNUSAS388253 SAMN37666044-rid19588423.denovo.19, whole genome shotgun sequence	3404..3665																																																avrA	ABNJAZ010000002.1	553636..554505	99.54	870	0						
GCA_032359495.1_PDT001829300.1_genomic.fna	Salmonella_enterica	0.5214	345.027 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJAY010000003.1 Salmonella enterica strain PNUSAS366630 SAMN36714834-rid18886593.denovo.03, whole genome shotgun sequence	386462..386899	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJAY010000037.1 Salmonella enterica strain PNUSAS366630 SAMN36714834-rid18886593.guided.27, whole genome shotgun sequence	5154..5591	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJAY010000012.1	95049..95917	99.195	870	0						
GCA_032359515.1_PDT001912964.1_genomic.fna	Salmonella_enterica	0.5216	605.666 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJBB010000001.1 Salmonella enterica strain PNUSAS388361 SAMN37664119-rid19587303.denovo.01, whole genome shotgun sequence	410913..411350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJBB010000026.1 Salmonella enterica strain PNUSAS388361 SAMN37664119-rid19587303.guided.14, whole genome shotgun sequence	12997..13434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJBB010000002.1	562148..563018	99.656	871	0						
GCA_032359535.1_PDT001913054.1_genomic.fna	Salmonella_enterica	0.5221	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJBA010000001.1 Salmonella enterica strain PNUSAS388593 SAMN37664568-rid19588803.denovo.01, whole genome shotgun sequence	800110..800547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJBA010000024.1 Salmonella enterica strain PNUSAS388593 SAMN37664568-rid19588803.guided.13, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJBA010000002.1	183136..184005	98.966	870	0						
GCA_032359555.1_PDT001829299.1_genomic.fna	Salmonella_enterica	0.5203	320.024 KB	5	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_19,thrA_12	582	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJBC010000005.1 Salmonella enterica strain PNUSAS366626 SAMN36714833-rid18886933.denovo.05, whole genome shotgun sequence	145385..145822	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJBC010000042.1 Salmonella enterica strain PNUSAS366626 SAMN36714833-rid18886933.guided.19, whole genome shotgun sequence	19826..20263	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.81	113 / 114	ABNJBC010000032.1 Salmonella enterica strain PNUSAS366626 SAMN36714833-rid18886933.denovo.35, whole genome shotgun sequence	2528..2639	enterobacteriales	ColpVC	98.96	193 / 193	ABNJBC010000035.1 Salmonella enterica strain PNUSAS366626 SAMN36714833-rid18886933.denovo.38, whole genome shotgun sequence	805..997																																																avrA	ABNJBC010000004.1	93733..94602	99.54	870	0						
GCA_032359605.1_PDT001829296.1_genomic.fna	Salmonella_enterica	0.5223	728.681 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJBE010000001.1 Salmonella enterica strain PNUSAS366624 SAMN36714832-rid18886573.denovo.01, whole genome shotgun sequence	645015..645452	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJBE010000018.1 Salmonella enterica strain PNUSAS366624 SAMN36714832-rid18886573.guided.11, whole genome shotgun sequence	15075..15512	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNJBE010000015.1 Salmonella enterica strain PNUSAS366624 SAMN36714832-rid18886573.denovo.18, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNJBE010000021.1 Salmonella enterica strain PNUSAS366624 SAMN36714832-rid18886573.guided.19, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNJBE010000015.1 Salmonella enterica strain PNUSAS366624 SAMN36714832-rid18886573.denovo.18, whole genome shotgun sequence	1522..1652																																																						avrA	ABNJBE010000002.1	561102..561972	99.656	871	0						
GCA_032359625.1_PDT001829297.1_genomic.fna	Salmonella_enterica	0.521	283.016 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJBD010000004.1 Salmonella enterica strain PNUSAS366628 SAMN36714830-rid18886923.denovo.04, whole genome shotgun sequence	162580..163017	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJBD010000033.1 Salmonella enterica strain PNUSAS366628 SAMN36714830-rid18886923.guided.19, whole genome shotgun sequence	16784..17221	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJBD010000022.1 Salmonella enterica strain PNUSAS366628 SAMN36714830-rid18886923.denovo.24, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNJBD010000026.1 Salmonella enterica strain PNUSAS366628 SAMN36714830-rid18886923.denovo.28, whole genome shotgun sequence	131..392																																																avrA	ABNJBD010000001.1	553303..554172	99.54	870	0						
GCA_032359665.1_PDT001829298.1_genomic.fna	Salmonella_enterica	0.5209	258.89 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJBF010000001.1 Salmonella enterica strain PNUSAS366629 SAMN36714831-rid18886583.denovo.01, whole genome shotgun sequence	293249..293686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJBF010000032.1 Salmonella enterica strain PNUSAS366629 SAMN36714831-rid18886583.guided.19, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJBF010000024.1 Salmonella enterica strain PNUSAS366629 SAMN36714831-rid18886583.denovo.27, whole genome shotgun sequence	6829..7471	enterobacteriales	IncFII(S)	100	262 / 262	ABNJBF010000025.1 Salmonella enterica strain PNUSAS366629 SAMN36714831-rid18886583.denovo.28, whole genome shotgun sequence	3381..3642																																																avrA	ABNJBF010000002.1	39351..40220	99.54	870	0						
GCA_032359745.1_PDT001829292.1_genomic.fna	Salmonella_enterica	0.5222	230.525 KB	8	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNJBI010000001.1 Salmonella enterica strain PNUSAS366625 SAMN36714816-rid18886903.denovo.01, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNJBI010000039.1 Salmonella enterica strain PNUSAS366625 SAMN36714816-rid18886903.guided.28, whole genome shotgun sequence	9258..9695	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJBI010000009.1	39475..40344	99.77	870	0						
GCA_032360125.1_PDT001829274.1_genomic.fna	Salmonella_enterica	0.5214	557.211 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNJBM010000009.1 Salmonella enterica strain PNUSAS366572 SAMN36714346-rid18886153.denovo.09, whole genome shotgun sequence	70822..71259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNJBM010000029.1 Salmonella enterica strain PNUSAS366572 SAMN36714346-rid18886153.guided.17, whole genome shotgun sequence	2168..2605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJBM010000003.1	95209..96078	98.966	870	0						
GCA_032360165.1_PDT001829273.1_genomic.fna	Salmonella_enterica	0.521	215.99 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJBN010000002.1 Salmonella enterica strain PNUSAS366556 SAMN36714338-rid18886503.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJBN010000053.1 Salmonella enterica strain PNUSAS366556 SAMN36714338-rid18886503.guided.16, whole genome shotgun sequence	24942..25379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJBN010000015.1 Salmonella enterica strain PNUSAS366556 SAMN36714338-rid18886503.denovo.15, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNJBN010000015.1 Salmonella enterica strain PNUSAS366556 SAMN36714338-rid18886503.denovo.15, whole genome shotgun sequence	22559..22820																																																avrA	ABNJBN010000005.1	155216..156084	100	869	0						
GCA_032360185.1_PDT001829284.1_genomic.fna	Salmonella_enterica	0.5214	412.228 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJBL010000001.1 Salmonella enterica strain PNUSAS366553 SAMN36714341-rid18886233.denovo.01, whole genome shotgun sequence	293264..293701	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJBL010000030.1 Salmonella enterica strain PNUSAS366553 SAMN36714341-rid18886233.guided.20, whole genome shotgun sequence	5683..6120	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJBL010000020.1 Salmonella enterica strain PNUSAS366553 SAMN36714341-rid18886233.denovo.21, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNJBL010000017.1 Salmonella enterica strain PNUSAS366553 SAMN36714341-rid18886233.denovo.17, whole genome shotgun sequence	3877..4138																																																avrA	ABNJBL010000002.1	553053..553922	99.54	870	0						
GCA_032360205.1_PDT001829270.1_genomic.fna	Salmonella_enterica	0.5202	223.473 KB	8	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJBO010000007.1 Salmonella enterica strain PNUSAS366559 SAMN36714336-rid18886123.denovo.07, whole genome shotgun sequence	80793..81230	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJBO010000072.1 Salmonella enterica strain PNUSAS366559 SAMN36714336-rid18886123.guided.37, whole genome shotgun sequence	7591..8028	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNJBO010000038.1 Salmonella enterica strain PNUSAS366559 SAMN36714336-rid18886123.denovo.39, whole genome shotgun sequence	11447..12089	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNJBO010000035.1 Salmonella enterica strain PNUSAS366559 SAMN36714336-rid18886123.denovo.35, whole genome shotgun sequence	18858..19440																																																avrA	ABNJBO010000003.1	39349..40218	99.425	870	0						
GCA_032360245.1_PDT001829264.1_genomic.fna	Salmonella_enterica	0.5227	280.611 KB	7	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJBQ010000001.1 Salmonella enterica strain PNUSAS366555 SAMN36714340-rid18886063.denovo.01, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJBQ010000048.1 Salmonella enterica strain PNUSAS366555 SAMN36714340-rid18886063.guided.34, whole genome shotgun sequence	4398..4835	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJBQ010000004.1	39350..40219	98.851	870	0						
GCA_032360305.1_PDT001913123.1_genomic.fna	Salmonella_enterica	0.5212	410.978 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJBS010000001.1 Salmonella enterica strain PNUSAS388243 SAMN37666048-rid19588513.denovo.01, whole genome shotgun sequence	867009..867446	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJBS010000025.1 Salmonella enterica strain PNUSAS388243 SAMN37666048-rid19588513.guided.16, whole genome shotgun sequence	9808..10245	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJBS010000002.1	563628..564497	99.77	870	0						
GCA_032360345.1_PDT001913087.1_genomic.fna	Salmonella_enterica	0.5222	88.055 KB	16	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJBU010000031.1 Salmonella enterica strain PNUSAS388653 SAMN37666017-rid19588223.denovo.31, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJBU010000092.1 Salmonella enterica strain PNUSAS388653 SAMN37666017-rid19588223.guided.72, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABNJBU010000046.1 Salmonella enterica strain PNUSAS388653 SAMN37666017-rid19588223.denovo.46, whole genome shotgun sequence	17320..17579																																																																	
GCA_032360625.1_PDT001913117.1_genomic.fna	Salmonella_enterica	0.5223	390.438 KB	5	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJCH010000001.1 Salmonella enterica strain PNUSAS388264 SAMN37666046-rid19588463.denovo.01, whole genome shotgun sequence	170344..170781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJCH010000030.1 Salmonella enterica strain PNUSAS388264 SAMN37666046-rid19588463.guided.20, whole genome shotgun sequence	11634..12071	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032360685.1_PDT001913090.1_genomic.fna	Salmonella_enterica	0.5215	219.164 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJCI010000001.1 Salmonella enterica strain PNUSAS388654 SAMN37666016-rid19588243.denovo.01, whole genome shotgun sequence	292144..292581	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJCI010000044.1 Salmonella enterica strain PNUSAS388654 SAMN37666016-rid19588243.guided.33, whole genome shotgun sequence	12388..12825	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJCI010000021.1 Salmonella enterica strain PNUSAS388654 SAMN37666016-rid19588243.denovo.21, whole genome shotgun sequence	49893..50535	enterobacteriales	IncFII(S)	100	262 / 262	ABNJCI010000035.1 Salmonella enterica strain PNUSAS388654 SAMN37666016-rid19588243.denovo.38, whole genome shotgun sequence	3413..3674																																																avrA	ABNJCI010000002.1	175197..176066	99.54	870	0						
GCA_032360745.1_PDT001828900.1_genomic.fna	Salmonella_enterica	0.5229	496.515 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJCK010000001.1 Salmonella enterica strain PNUSAS366090 SAMN36713653-rid18882623.denovo.01, whole genome shotgun sequence	790298..790735	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJCK010000024.1 Salmonella enterica strain PNUSAS366090 SAMN36713653-rid18882623.guided.15, whole genome shotgun sequence	2559..2996	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJCK010000002.1	147016..147885	98.966	870	0						
GCA_032360785.1_PDT001828899.1_genomic.fna	Salmonella_enterica	0.5198	442.727 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJCL010000002.1 Salmonella enterica strain PNUSAS366087 SAMN36713650-rid18882613.denovo.02, whole genome shotgun sequence	477381..477818	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJCL010000015.1 Salmonella enterica strain PNUSAS366087 SAMN36713650-rid18882613.denovo.15, whole genome shotgun sequence	2740..3273	enterobacteriales	IncX1	98.4	374 / 374	ABNJCL010000018.1 Salmonella enterica strain PNUSAS366087 SAMN36713650-rid18882613.denovo.18, whole genome shotgun sequence	6956..7329																																																avrA	ABNJCL010000009.1	150753..151623	99.196	871	0						
GCA_032360815.1_PDT001828898.1_genomic.fna	Salmonella_enterica	0.5221	219.542 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJCM010000001.1 Salmonella enterica strain PNUSAS366092 SAMN36713651-rid18882143.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJCM010000040.1 Salmonella enterica strain PNUSAS366092 SAMN36713651-rid18882143.guided.29, whole genome shotgun sequence	797..1234	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJCM010000005.1	94133..95001	99.77	870	0						
GCA_032360865.1_PDT001828897.1_genomic.fna	Salmonella_enterica	0.5228	192.568 KB	8	aroC_397,dnaN_380,hemD_121,hisD_99,purE_411,sucA_9,thrA_406	1370	7:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_397	dnaN	100	100	dnaN_380	hemD	100	100	hemD_121	hisD	100	100	hisD_99	purE	100	100	purE_411	sucA	100	100	sucA_9	thrA	100	100	thrA_406	7	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Oslo		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJCO010000002.1 Salmonella enterica strain PNUSAS366078 SAMN36713652-rid18882133.denovo.02, whole genome shotgun sequence	77687..78124	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJCO010000053.1 Salmonella enterica strain PNUSAS366078 SAMN36713652-rid18882133.guided.42, whole genome shotgun sequence	383..820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNJCO010000023.1 Salmonella enterica strain PNUSAS366078 SAMN36713652-rid18882133.denovo.23, whole genome shotgun sequence	65917..66058																																																						avrA	ABNJCO010000008.1	138495..139364	99.77	870	0						
GCA_032360885.1_PDT001828896.1_genomic.fna	Salmonella_enterica	0.5219	280.393 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJCN010000001.1 Salmonella enterica strain PNUSAS366073 SAMN36713621-rid18882123.denovo.01, whole genome shotgun sequence	214945..215382	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJCN010000044.1 Salmonella enterica strain PNUSAS366073 SAMN36713621-rid18882123.guided.33, whole genome shotgun sequence	2684..3121	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJCN010000017.1 Salmonella enterica strain PNUSAS366073 SAMN36713621-rid18882123.denovo.17, whole genome shotgun sequence	48402..49044	enterobacteriales	IncFII(S)	100	262 / 262	ABNJCN010000017.1 Salmonella enterica strain PNUSAS366073 SAMN36713621-rid18882123.denovo.17, whole genome shotgun sequence	64129..64390																																																avrA	ABNJCN010000002.1	209366..210235	99.885	870	0						
GCA_032360905.1_PDT001828895.1_genomic.fna	Salmonella_enterica	0.5214	696.588 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJCQ010000001.1 Salmonella enterica strain PNUSAS366080 SAMN36713615-rid18882603.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJCQ010000023.1 Salmonella enterica strain PNUSAS366080 SAMN36713615-rid18882603.guided.21, whole genome shotgun sequence	225..662	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJCQ010000013.1 Salmonella enterica strain PNUSAS366080 SAMN36713615-rid18882603.denovo.13, whole genome shotgun sequence	40524..41166	enterobacteriales	IncFII(S)	100	262 / 262	ABNJCQ010000017.1 Salmonella enterica strain PNUSAS366080 SAMN36713615-rid18882603.denovo.17, whole genome shotgun sequence	3387..3648																																																avrA	ABNJCQ010000002.1	553690..554559	99.54	870	0						
GCA_032360925.1_PDT001828894.1_genomic.fna	Salmonella_enterica	0.521	396.832 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJCP010000010.1 Salmonella enterica strain PNUSAS366089 SAMN36713618-rid18882593.denovo.10, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJCP010000035.1 Salmonella enterica strain PNUSAS366089 SAMN36713618-rid18882593.guided.29, whole genome shotgun sequence	883..1320	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJCP010000020.1 Salmonella enterica strain PNUSAS366089 SAMN36713618-rid18882593.denovo.20, whole genome shotgun sequence	34957..35490																																																						avrA	ABNJCP010000009.1	187683..188549	98.966	870	0						
GCA_032360945.1_PDT001828893.1_genomic.fna	Salmonella_enterica	0.5209	263.523 KB	7	aroC_46,dnaN_661,hemD_3,hisD_18,purE_6,sucA_138,thrA_1	4108	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_661	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJCS010000009.1 Salmonella enterica strain PNUSAS366081 SAMN36713616-rid18882113.denovo.09, whole genome shotgun sequence	137171..137608	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJCS010000041.1 Salmonella enterica strain PNUSAS366081 SAMN36713616-rid18882113.guided.30, whole genome shotgun sequence	8026..8463	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJCS010000019.1 Salmonella enterica strain PNUSAS366081 SAMN36713616-rid18882113.denovo.19, whole genome shotgun sequence	34958..35491																																																						avrA	ABNJCS010000005.1	187301..188167	98.966	870	0						
GCA_032360985.1_PDT001828892.1_genomic.fna	Salmonella_enterica	0.5199	321.34 KB	6	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJCR010000002.1 Salmonella enterica strain PNUSAS366076 SAMN36713617-rid18882583.denovo.02, whole genome shotgun sequence	395350..395787	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJCR010000046.1 Salmonella enterica strain PNUSAS366076 SAMN36713617-rid18882583.guided.38, whole genome shotgun sequence	618..1055	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNJCR010000020.1 Salmonella enterica strain PNUSAS366076 SAMN36713617-rid18882583.denovo.20, whole genome shotgun sequence	59137..59779																																																																	
GCA_032361005.1_PDT001828891.1_genomic.fna	Salmonella_enterica	0.5215	300.723 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJCT010000001.1 Salmonella enterica strain PNUSAS366075 SAMN36713619-rid18882103.denovo.01, whole genome shotgun sequence	212960..213397	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJCT010000047.1 Salmonella enterica strain PNUSAS366075 SAMN36713619-rid18882103.guided.34, whole genome shotgun sequence	659..1096	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJCT010000016.1 Salmonella enterica strain PNUSAS366075 SAMN36713619-rid18882103.denovo.16, whole genome shotgun sequence	68489..69131	enterobacteriales	IncFII(S)	100	262 / 262	ABNJCT010000016.1 Salmonella enterica strain PNUSAS366075 SAMN36713619-rid18882103.denovo.16, whole genome shotgun sequence	84216..84477																																																avrA	ABNJCT010000002.1	209356..210225	99.885	870	0						
GCA_032361025.1_PDT001828889.1_genomic.fna	Salmonella_enterica	0.5212	225.555 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		1	IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJCW010000003.1 Salmonella enterica strain PNUSAS366074 SAMN36713620-rid18882563.denovo.03, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJCW010000048.1 Salmonella enterica strain PNUSAS366074 SAMN36713620-rid18882563.denovo.55, whole genome shotgun sequence	17..796	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNJCW010000055.1 Salmonella enterica strain PNUSAS366074 SAMN36713620-rid18882563.guided.37, whole genome shotgun sequence	2864..3301	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJCW010000059.1 Salmonella enterica strain PNUSAS366074 SAMN36713620-rid18882563.guided.53, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNJCW010000044.1 Salmonella enterica strain PNUSAS366074 SAMN36713620-rid18882563.denovo.50, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNJCW010000058.1 Salmonella enterica strain PNUSAS366074 SAMN36713620-rid18882563.guided.48, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNJCW010000035.1 Salmonella enterica strain PNUSAS366074 SAMN36713620-rid18882563.denovo.39, whole genome shotgun sequence	5127..6341	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNJCW010000056.1 Salmonella enterica strain PNUSAS366074 SAMN36713620-rid18882563.guided.38, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNJCW010000057.1 Salmonella enterica strain PNUSAS366074 SAMN36713620-rid18882563.guided.43, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNJCW010000035.1 Salmonella enterica strain PNUSAS366074 SAMN36713620-rid18882563.denovo.39, whole genome shotgun sequence	3015..4190	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNJCW010000056.1 Salmonella enterica strain PNUSAS366074 SAMN36713620-rid18882563.guided.38, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	IncFII(S)	100	262 / 262	ABNJCW010000023.1 Salmonella enterica strain PNUSAS366074 SAMN36713620-rid18882563.denovo.23, whole genome shotgun sequence	50949..51210																																																						avrA	ABNJCW010000001.1	506627..507496	99.885	870	0						
GCA_032361045.1_PDT001828888.1_genomic.fna	Salmonella_enterica	0.5214	489.886 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJCV010000001.1 Salmonella enterica strain PNUSAS366091 SAMN36713606-rid18882093.denovo.01, whole genome shotgun sequence	608441..608878	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJCV010000024.1 Salmonella enterica strain PNUSAS366091 SAMN36713606-rid18882093.guided.17, whole genome shotgun sequence	14401..14838	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJCV010000014.1 Salmonella enterica strain PNUSAS366091 SAMN36713606-rid18882093.denovo.14, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNJCV010000017.1 Salmonella enterica strain PNUSAS366091 SAMN36713606-rid18882093.denovo.19, whole genome shotgun sequence	3446..3707																																																avrA	ABNJCV010000002.1	553635..554504	99.54	870	0						
GCA_032361505.1_PDT001828887.1_genomic.fna	Salmonella_enterica	0.5214	261.656 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJCX010000010.1 Salmonella enterica strain PNUSAS366086 SAMN36713612-rid18882083.denovo.10, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJCX010000038.1 Salmonella enterica strain PNUSAS366086 SAMN36713612-rid18882083.guided.29, whole genome shotgun sequence	1817..2254	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJCX010000020.1 Salmonella enterica strain PNUSAS366086 SAMN36713612-rid18882083.denovo.20, whole genome shotgun sequence	34957..35490																																																						avrA	ABNJCX010000011.1	153747..154615	99.54	870	0						
GCA_032361525.1_PDT001828886.1_genomic.fna	Salmonella_enterica	0.5216	437.192 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJCY010000001.1 Salmonella enterica strain PNUSAS366077 SAMN36713611-rid18882073.denovo.01, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJCY010000031.1 Salmonella enterica strain PNUSAS366077 SAMN36713611-rid18882073.guided.19, whole genome shotgun sequence	6572..7009	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNJCY010000013.1 Salmonella enterica strain PNUSAS366077 SAMN36713611-rid18882073.denovo.13, whole genome shotgun sequence	69143..70348	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJCY010000030.1 Salmonella enterica strain PNUSAS366077 SAMN36713611-rid18882073.guided.18, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNJCY010000021.1 Salmonella enterica strain PNUSAS366077 SAMN36713611-rid18882073.denovo.25, whole genome shotgun sequence	547..675	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJCY010000013.1 Salmonella enterica strain PNUSAS366077 SAMN36713611-rid18882073.denovo.13, whole genome shotgun sequence	76734..76875		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJCY010000030.1 Salmonella enterica strain PNUSAS366077 SAMN36713611-rid18882073.guided.18, whole genome shotgun sequence	3169..3310																																									avrA	ABNJCY010000008.1	147016..147885	98.966	870	0						
GCA_032361545.1_PDT001828883.1_genomic.fna	Salmonella_enterica	0.5219	316.025 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNJDA010000011.1 Salmonella enterica strain PNUSAS366083 SAMN36713610-rid18882063.denovo.11, whole genome shotgun sequence	70815..71252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNJDA010000031.1 Salmonella enterica strain PNUSAS366083 SAMN36713610-rid18882063.guided.22, whole genome shotgun sequence	8551..8988	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJDA010000003.1	131928..132797	98.966	870	0						
GCA_032361565.1_PDT001828879.1_genomic.fna	Salmonella_enterica	0.5209	529.604 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJCZ010000002.1 Salmonella enterica strain PNUSAS366532 SAMN36713576-rid18882523.denovo.02, whole genome shotgun sequence	288170..288607	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJCZ010000027.1 Salmonella enterica strain PNUSAS366532 SAMN36713576-rid18882523.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJCZ010000016.1 Salmonella enterica strain PNUSAS366532 SAMN36713576-rid18882523.denovo.17, whole genome shotgun sequence	36763..37405	enterobacteriales	IncFII(S)	100	262 / 262	ABNJCZ010000016.1 Salmonella enterica strain PNUSAS366532 SAMN36713576-rid18882523.denovo.17, whole genome shotgun sequence	42855..43116																																																avrA	ABNJCZ010000001.1	552994..553863	99.54	870	0						
GCA_032361605.1_PDT001828881.1_genomic.fna	Salmonella_enterica	0.5211	490.04 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJDB010000001.1 Salmonella enterica strain PNUSAS366088 SAMN36713607-rid18882043.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJDB010000023.1 Salmonella enterica strain PNUSAS366088 SAMN36713607-rid18882043.guided.14, whole genome shotgun sequence	13059..13496	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJDB010000011.1 Salmonella enterica strain PNUSAS366088 SAMN36713607-rid18882043.denovo.11, whole genome shotgun sequence	47948..48590	enterobacteriales	IncFII(S)	100	262 / 262	ABNJDB010000011.1 Salmonella enterica strain PNUSAS366088 SAMN36713607-rid18882043.denovo.11, whole genome shotgun sequence	3704..3965																																																avrA	ABNJDB010000002.1	505461..506330	99.54	870	0						
GCA_032361625.1_PDT001828876.1_genomic.fna	Salmonella_enterica	0.5218	425.575 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNJDC010000004.1 Salmonella enterica strain PNUSAS366520 SAMN36713549-rid18882023.denovo.04, whole genome shotgun sequence	354324..354761	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNJDC010000026.1 Salmonella enterica strain PNUSAS366520 SAMN36713549-rid18882023.guided.21, whole genome shotgun sequence	234..671	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJDC010000002.1	131918..132787	98.966	870	0						
GCA_032361645.1_PDT001828874.1_genomic.fna	Salmonella_enterica	0.5215	430.195 KB	5	aroC_16,dnaN_2,hemD_45,hisD_1540,purE_36,sucA_39,thrA_42	7922	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_1540	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJDE010000001.1 Salmonella enterica strain PNUSAS366524 SAMN36713545-rid18882493.denovo.01, whole genome shotgun sequence	386462..386899	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJDE010000023.1 Salmonella enterica strain PNUSAS366524 SAMN36713545-rid18882493.guided.18, whole genome shotgun sequence	19408..19845	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJDE010000010.1	140203..141071	99.195	870	0						
GCA_032361665.1_PDT001828873.1_genomic.fna	Salmonella_enterica	0.5208	673.542 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJDD010000001.1 Salmonella enterica strain PNUSAS366515 SAMN36713537-rid18882013.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJDD010000015.1 Salmonella enterica strain PNUSAS366515 SAMN36713537-rid18882013.guided.12, whole genome shotgun sequence	8400..8837	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032361685.1_PDT001828871.1_genomic.fna	Salmonella_enterica	0.5217	592.026 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJDG010000001.1 Salmonella enterica strain PNUSAS366512 SAMN36713538-rid18881993.denovo.01, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNJDG010000028.1 Salmonella enterica strain PNUSAS366512 SAMN36713538-rid18881993.guided.18, whole genome shotgun sequence	14211..14648	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJDG010000003.1	496940..497808	99.425	870	0						
GCA_032361725.1_PDT001828870.1_genomic.fna	Salmonella_enterica	0.5221	402.668 KB	5	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNJDH010000001.1 Salmonella enterica strain PNUSAS366521 SAMN36713548-rid18882483.denovo.01, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNJDH010000024.1 Salmonella enterica strain PNUSAS366521 SAMN36713548-rid18882483.guided.20, whole genome shotgun sequence	15035..15472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJDH010000007.1	179115..179983	99.655	870	0						
GCA_032361745.1_PDT001828872.1_genomic.fna	Salmonella_enterica	0.5205	507.504 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	-	Salmonella enterica subspecies enterica (subspecies I)	I 9:l,z28:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJDF010000001.1 Salmonella enterica strain PNUSAS366518 SAMN36713551-rid18882003.denovo.01, whole genome shotgun sequence	398384..398821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNJDF010000024.1 Salmonella enterica strain PNUSAS366518 SAMN36713551-rid18882003.guided.18, whole genome shotgun sequence	3571..4008	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJDF010000002.1	496848..497716	99.425	870	0						
GCA_032361805.1_PDT001828868.1_genomic.fna	Salmonella_enterica	0.5213	489.854 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJDI010000001.1 Salmonella enterica strain PNUSAS366519 SAMN36713550-rid18882463.denovo.01, whole genome shotgun sequence	550202..550639	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJDI010000024.1 Salmonella enterica strain PNUSAS366519 SAMN36713550-rid18882463.guided.17, whole genome shotgun sequence	1930..2367	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJDI010000014.1 Salmonella enterica strain PNUSAS366519 SAMN36713550-rid18882463.denovo.14, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	ABNJDI010000014.1 Salmonella enterica strain PNUSAS366519 SAMN36713550-rid18882463.denovo.14, whole genome shotgun sequence	55649..55910																																																avrA	ABNJDI010000002.1	553181..554050	99.54	870	0						
GCA_032361825.1_PDT001828869.1_genomic.fna	Salmonella_enterica	0.5227	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJDJ010000001.1 Salmonella enterica strain PNUSAS366516 SAMN36713539-rid18882473.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJDJ010000022.1 Salmonella enterica strain PNUSAS366516 SAMN36713539-rid18882473.guided.15, whole genome shotgun sequence	287..724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJDJ010000002.1	183135..184004	98.851	870	0						
GCA_032361845.1_PDT001828867.1_genomic.fna	Salmonella_enterica	0.5203	430.918 KB	4	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJDK010000001.1 Salmonella enterica strain PNUSAS366523 SAMN36713546-rid18882453.denovo.01, whole genome shotgun sequence	754561..754998	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJDK010000023.1 Salmonella enterica strain PNUSAS366523 SAMN36713546-rid18882453.guided.12, whole genome shotgun sequence	15990..16427	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032361905.1_PDT001828866.1_genomic.fna	Salmonella_enterica	0.5227	397.496 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJDL010000001.1 Salmonella enterica strain PNUSAS366513 SAMN36713541-rid18881983.denovo.01, whole genome shotgun sequence	790277..790714	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJDL010000023.1 Salmonella enterica strain PNUSAS366513 SAMN36713541-rid18881983.guided.17, whole genome shotgun sequence	7859..8296	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJDL010000002.1	182986..183855	98.851	870	0						
GCA_032361915.1_PDT001828865.1_genomic.fna	Salmonella_enterica	0.5212	713.148 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJDM010000001.1 Salmonella enterica strain PNUSAS366527 SAMN36713542-rid18882443.denovo.01, whole genome shotgun sequence	978025..978462	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJDM010000019.1 Salmonella enterica strain PNUSAS366527 SAMN36713542-rid18882443.guided.15, whole genome shotgun sequence	8259..8696	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJDM010000010.1 Salmonella enterica strain PNUSAS366527 SAMN36713542-rid18882443.denovo.10, whole genome shotgun sequence	12418..12951																																																						avrA	ABNJDM010000003.1	563725..564594	99.77	870	0						
GCA_032361965.1_PDT001828864.1_genomic.fna	Salmonella_enterica	0.5231	320.367 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJDN010000001.1 Salmonella enterica strain PNUSAS366517 SAMN36713540-rid18882433.denovo.01, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJDN010000035.1 Salmonella enterica strain PNUSAS366517 SAMN36713540-rid18882433.guided.28, whole genome shotgun sequence	1639..2076	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032361985.1_PDT001828860.1_genomic.fna	Salmonella_enterica	0.5205	490.113 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJDO010000001.1 Salmonella enterica strain PNUSAS366525 SAMN36713544-rid18882413.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJDO010000021.1 Salmonella enterica strain PNUSAS366525 SAMN36713544-rid18882413.guided.16, whole genome shotgun sequence	3315..3752	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJDO010000012.1 Salmonella enterica strain PNUSAS366525 SAMN36713544-rid18882413.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNJDO010000015.1 Salmonella enterica strain PNUSAS366525 SAMN36713544-rid18882413.denovo.18, whole genome shotgun sequence	3404..3665		enterobacteriales	IncX1	98.93	374 / 374	ABNJDO010000014.1 Salmonella enterica strain PNUSAS366525 SAMN36713544-rid18882413.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNJDO010000002.1	553577..554446	99.54	870	0						
GCA_032362025.1_PDT001828885.1_genomic.fna	Salmonella_enterica	0.5208	363.228 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJDQ010000001.1 Salmonella enterica strain PNUSAS366079 SAMN36713614-rid18882553.denovo.01, whole genome shotgun sequence	798729..799166	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJDQ010000035.1 Salmonella enterica strain PNUSAS366079 SAMN36713614-rid18882553.guided.30, whole genome shotgun sequence	1732..2169	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJDQ010000003.1	113473..114342	99.195	870	0						
GCA_032362045.1_PDT001913039.1_genomic.fna	Salmonella_enterica	0.523	444.116 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJDR010000001.1 Salmonella enterica strain PNUSAS388585 SAMN37664575-rid19587903.denovo.01, whole genome shotgun sequence	573972..574409	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJDR010000029.1 Salmonella enterica strain PNUSAS388585 SAMN37664575-rid19587903.guided.22, whole genome shotgun sequence	3650..4087	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJDR010000002.1	149828..150697	99.655	870	0						
GCA_032362065.1_PDT001828882.1_genomic.fna	Salmonella_enterica	0.5212	192.474 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJDS010000005.1 Salmonella enterica strain PNUSAS366085 SAMN36713608-rid18882053.denovo.05, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJDS010000048.1 Salmonella enterica strain PNUSAS366085 SAMN36713608-rid18882053.guided.38, whole genome shotgun sequence	5217..5654	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJDS010000006.1	174642..175510	99.77	870	0						
GCA_032363755.1_PDT001828049.1_genomic.fna	Salmonella_enterica	0.522	558.057 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNJDZ010000001.1 Salmonella enterica strain PNUSAS366184 SAMN36705884-rid18875883.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNJDZ010000023.1 Salmonella enterica strain PNUSAS366184 SAMN36705884-rid18875883.guided.17, whole genome shotgun sequence	1199..1636	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJDZ010000003.1	94228..95097	98.966	870	0						
GCA_032363775.1_PDT001828045.1_genomic.fna	Salmonella_enterica	0.5208	489.854 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJEA010000001.1 Salmonella enterica strain PNUSAS366178 SAMN36705882-rid18875843.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJEA010000024.1 Salmonella enterica strain PNUSAS366178 SAMN36705882-rid18875843.guided.13, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJEA010000012.1 Salmonella enterica strain PNUSAS366178 SAMN36705882-rid18875843.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNJEA010000015.1 Salmonella enterica strain PNUSAS366178 SAMN36705882-rid18875843.denovo.18, whole genome shotgun sequence	3395..3656																																																avrA	ABNJEA010000002.1	553199..554068	99.54	870	0						
GCA_032363795.1_PDT001828042.1_genomic.fna	Salmonella_enterica	0.521	490.001 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJEB010000001.1 Salmonella enterica strain PNUSAS366176 SAMN36705818-rid18875813.denovo.01, whole genome shotgun sequence	774495..774932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJEB010000019.1 Salmonella enterica strain PNUSAS366176 SAMN36705818-rid18875813.guided.10, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	262 / 262	ABNJEB010000012.1 Salmonella enterica strain PNUSAS366176 SAMN36705818-rid18875813.denovo.15, whole genome shotgun sequence	3182..3443																																																						avrA	ABNJEB010000002.1	553630..554499	99.54	870	0						
GCA_032363815.1_PDT001828047.1_genomic.fna	Salmonella_enterica	0.5215	283.628 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul2,tet(B),tet(B)	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJEE010000001.1 Salmonella enterica strain PNUSAS366186 SAMN36705880-rid18875863.denovo.01, whole genome shotgun sequence	570490..570927	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJEE010000034.1 Salmonella enterica strain PNUSAS366186 SAMN36705880-rid18875863.denovo.34, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJEE010000034.1 Salmonella enterica strain PNUSAS366186 SAMN36705880-rid18875863.denovo.34, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNJEE010000048.1 Salmonella enterica strain PNUSAS366186 SAMN36705880-rid18875863.guided.42, whole genome shotgun sequence	2283..3119	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJEE010000048.1 Salmonella enterica strain PNUSAS366186 SAMN36705880-rid18875863.guided.42, whole genome shotgun sequence	1480..2283	Streptomycin	AF321551	aac(6')-Iaa	100	399/438	ABNJEE010000052.1 Salmonella enterica strain PNUSAS366186 SAMN36705880-rid18875863.guided.51, whole genome shotgun sequence	1..399	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNJEE010000042.1 Salmonella enterica strain PNUSAS366186 SAMN36705880-rid18875863.denovo.48, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNJEE010000051.1 Salmonella enterica strain PNUSAS366186 SAMN36705880-rid18875863.guided.47, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNJEE010000040.1 Salmonella enterica strain PNUSAS366186 SAMN36705880-rid18875863.denovo.45, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNJEE010000050.1 Salmonella enterica strain PNUSAS366186 SAMN36705880-rid18875863.guided.44, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABNJEE010000034.1 Salmonella enterica strain PNUSAS366186 SAMN36705880-rid18875863.denovo.34, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNJEE010000048.1 Salmonella enterica strain PNUSAS366186 SAMN36705880-rid18875863.guided.42, whole genome shotgun sequence	604..1419	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNJEE010000029.1 Salmonella enterica strain PNUSAS366186 SAMN36705880-rid18875863.denovo.29, whole genome shotgun sequence	7275..8480	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJEE010000049.1 Salmonella enterica strain PNUSAS366186 SAMN36705880-rid18875863.guided.43, whole genome shotgun sequence	747..1952	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	100	131 / 131	ABNJEE010000040.1 Salmonella enterica strain PNUSAS366186 SAMN36705880-rid18875863.denovo.45, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNJEE010000050.1 Salmonella enterica strain PNUSAS366186 SAMN36705880-rid18875863.guided.44, whole genome shotgun sequence	2044..2174																																																avrA	ABNJEE010000002.1	573763..574632	99.885	870	0						
GCA_032363835.1_PDT001828050.1_genomic.fna	Salmonella_enterica	0.5196	769.812 KB	2	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJEC010000001.1 Salmonella enterica strain PNUSAS366185 SAMN36705883-rid18875893.denovo.01, whole genome shotgun sequence	671787..672224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJEC010000034.1 Salmonella enterica strain PNUSAS366185 SAMN36705883-rid18875893.guided.27, whole genome shotgun sequence	1376..1813	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNJEC010000014.1 Salmonella enterica strain PNUSAS366185 SAMN36705883-rid18875893.denovo.14, whole genome shotgun sequence	5935..6577																																																						avrA	ABNJEC010000003.1	325411..326280	99.425	870	0						
GCA_032363855.1_PDT001828048.1_genomic.fna	Salmonella_enterica	0.5229	527.523 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJED010000001.1 Salmonella enterica strain PNUSAS366181 SAMN36705881-rid18875873.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJED010000040.1 Salmonella enterica strain PNUSAS366181 SAMN36705881-rid18875873.guided.22, whole genome shotgun sequence	4886..5323	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJED010000003.1	149828..150697	99.655	870	0						
GCA_032363875.1_PDT001828046.1_genomic.fna	Salmonella_enterica	0.5216	282.835 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	Col8282	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJEF010000001.1 Salmonella enterica strain PNUSAS366187 SAMN36705885-rid18875853.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJEF010000033.1 Salmonella enterica strain PNUSAS366187 SAMN36705885-rid18875853.denovo.38, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJEF010000033.1 Salmonella enterica strain PNUSAS366187 SAMN36705885-rid18875853.denovo.38, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNJEF010000048.1 Salmonella enterica strain PNUSAS366187 SAMN36705885-rid18875853.guided.36, whole genome shotgun sequence	2895..3332	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJEF010000049.1 Salmonella enterica strain PNUSAS366187 SAMN36705885-rid18875853.guided.37, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJEF010000049.1 Salmonella enterica strain PNUSAS366187 SAMN36705885-rid18875853.guided.37, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNJEF010000038.1 Salmonella enterica strain PNUSAS366187 SAMN36705885-rid18875853.denovo.44, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNJEF010000050.1 Salmonella enterica strain PNUSAS366187 SAMN36705885-rid18875853.guided.43, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNJEF010000033.1 Salmonella enterica strain PNUSAS366187 SAMN36705885-rid18875853.denovo.38, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNJEF010000049.1 Salmonella enterica strain PNUSAS366187 SAMN36705885-rid18875853.guided.37, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNJEF010000027.1 Salmonella enterica strain PNUSAS366187 SAMN36705885-rid18875853.denovo.30, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJEF010000047.1 Salmonella enterica strain PNUSAS366187 SAMN36705885-rid18875853.guided.29, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col8282	90.1	202 / 207	ABNJEF010000035.1 Salmonella enterica strain PNUSAS366187 SAMN36705885-rid18875853.denovo.40, whole genome shotgun sequence	191..392																																																						avrA	ABNJEF010000002.1	589500..590369	99.885	870	0						
GCA_032363895.1_PDT001828044.1_genomic.fna	Salmonella_enterica	0.5196	274.637 KB	6	aroC_175,dnaN_11,hemD_125,hisD_199,purE_9,sucA_9,thrA_160	557	6,14:z:l,z13,z28	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_175	dnaN	100	100	dnaN_11	hemD	100	100	hemD_125	hisD	100	100	hisD_199	purE	100	100	purE_9	sucA	100	100	sucA_9	thrA	100	100	thrA_160	6,14	z	l,z13,z28	Salmonella enterica subspecies enterica (subspecies I)	Poano		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNJEG010000001.1 Salmonella enterica strain PNUSAS366179 SAMN36705886-rid18875833.denovo.01, whole genome shotgun sequence	534839..535276	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNJEG010000055.1 Salmonella enterica strain PNUSAS366179 SAMN36705886-rid18875833.guided.16, whole genome shotgun sequence	16432..16869	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJEG010000009.1	140515..141384	98.966	870	0						
GCA_032363915.1_PDT001828041.1_genomic.fna	Salmonella_enterica	0.5226	367.797 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJEI010000001.1 Salmonella enterica strain PNUSAS366182 SAMN36705822-rid18875803.denovo.01, whole genome shotgun sequence	595669..596106	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJEI010000043.1 Salmonella enterica strain PNUSAS366182 SAMN36705822-rid18875803.guided.33, whole genome shotgun sequence	495..932	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJEI010000007.1	127356..128225	98.966	870	0						
GCA_032363935.1_PDT001828040.1_genomic.fna	Salmonella_enterica	0.5224	417.917 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJEJ010000001.1 Salmonella enterica strain PNUSAS366183 SAMN36705821-rid18875793.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJEJ010000024.1 Salmonella enterica strain PNUSAS366183 SAMN36705821-rid18875793.guided.13, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJEJ010000003.1	150323..151192	99.655	870	0						
GCA_032363955.1_PDT001828043.1_genomic.fna	Salmonella_enterica	0.5216	482.762 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNJEH010000002.1 Salmonella enterica strain PNUSAS366174 SAMN36705816-rid18875823.denovo.02, whole genome shotgun sequence	403902..404339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNJEH010000036.1 Salmonella enterica strain PNUSAS366174 SAMN36705816-rid18875823.guided.27, whole genome shotgun sequence	649..1086	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJEH010000001.1	549391..550260	99.655	870	0						
GCA_032363975.1_PDT001828039.1_genomic.fna	Salmonella_enterica	0.5216	341.378 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5!,purE_5!,sucA_9,thrA_2	Unknown	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5!	purE	100	100	purE_5!	sucA	100	100	sucA_9	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJEK010000004.1 Salmonella enterica strain PNUSAS366175 SAMN36705820-rid18875783.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJEK010000036.1 Salmonella enterica strain PNUSAS366175 SAMN36705820-rid18875783.guided.16, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNJEK010000015.1 Salmonella enterica strain PNUSAS366175 SAMN36705820-rid18875783.denovo.17, whole genome shotgun sequence	74964..76163	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJEK010000038.1 Salmonella enterica strain PNUSAS366175 SAMN36705820-rid18875783.guided.30, whole genome shotgun sequence	2878..4077	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	100	643 / 643	ABNJEK010000016.1 Salmonella enterica strain PNUSAS366175 SAMN36705820-rid18875783.denovo.18, whole genome shotgun sequence	48418..49060	enterobacteriales	IncFII(S)	100	262 / 262	ABNJEK010000016.1 Salmonella enterica strain PNUSAS366175 SAMN36705820-rid18875783.denovo.18, whole genome shotgun sequence	64145..64406		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJEK010000015.1 Salmonella enterica strain PNUSAS366175 SAMN36705820-rid18875783.denovo.17, whole genome shotgun sequence	84953..85094																																									avrA	ABNJEK010000001.1	446736..447604	100	869	0						
GCA_032363995.1_PDT001828038.1_genomic.fna	Salmonella_enterica	0.5203	424.198 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJEL010000001.1 Salmonella enterica strain PNUSAS366177 SAMN36705823-rid18875773.denovo.01, whole genome shotgun sequence	18984..19421	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJEL010000032.1 Salmonella enterica strain PNUSAS366177 SAMN36705823-rid18875773.guided.16, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABNJEL010000024.1 Salmonella enterica strain PNUSAS366177 SAMN36705823-rid18875773.denovo.27, whole genome shotgun sequence	4022..4152	enterobacteriales	IncFII(S)	100	262 / 262	ABNJEL010000022.1 Salmonella enterica strain PNUSAS366177 SAMN36705823-rid18875773.denovo.25, whole genome shotgun sequence	3130..3391		enterobacteriales	IncX1	98.66	374 / 374	ABNJEL010000020.1 Salmonella enterica strain PNUSAS366177 SAMN36705823-rid18875773.denovo.22, whole genome shotgun sequence	30551..30924																																									avrA	ABNJEL010000002.1	505838..506707	99.54	870	0						
GCA_032364015.1_PDT001828036.1_genomic.fna	Salmonella_enterica	0.5222	501.166 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJEM010000001.1 Salmonella enterica strain PNUSAS366188 SAMN36705819-rid18875753.denovo.01, whole genome shotgun sequence	645037..645474	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJEM010000021.1 Salmonella enterica strain PNUSAS366188 SAMN36705819-rid18875753.guided.17, whole genome shotgun sequence	238..675	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJEM010000007.1	140050..140919	99.655	870	0						
GCA_032364175.1_PDT001827987.1_genomic.fna	Salmonella_enterica	0.5212	412.183 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJEX010000001.1 Salmonella enterica strain PNUSAS364687 SAMN36704165-rid18875263.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJEX010000026.1 Salmonella enterica strain PNUSAS364687 SAMN36704165-rid18875263.guided.19, whole genome shotgun sequence	10910..11347	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJEX010000015.1 Salmonella enterica strain PNUSAS364687 SAMN36704165-rid18875263.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNJEX010000015.1 Salmonella enterica strain PNUSAS364687 SAMN36704165-rid18875263.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNJEX010000002.1	553438..554307	99.54	870	0						
GCA_032364215.1_PDT001827983.1_genomic.fna	Salmonella_enterica	0.5209	283.016 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJEW010000001.1 Salmonella enterica strain PNUSAS364691 SAMN36704160-rid18875223.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJEW010000031.1 Salmonella enterica strain PNUSAS364691 SAMN36704160-rid18875223.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJEW010000021.1 Salmonella enterica strain PNUSAS364691 SAMN36704160-rid18875223.denovo.23, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABNJEW010000023.1 Salmonella enterica strain PNUSAS364691 SAMN36704160-rid18875223.denovo.26, whole genome shotgun sequence	3438..3699																																																avrA	ABNJEW010000006.1	175109..175978	99.54	870	0						
GCA_032364235.1_PDT001827982.1_genomic.fna	Salmonella_enterica	0.5206	306.287 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJEY010000001.1 Salmonella enterica strain PNUSAS364686 SAMN36704162-rid18875213.denovo.01, whole genome shotgun sequence	477374..477811	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJEY010000036.1 Salmonella enterica strain PNUSAS364686 SAMN36704162-rid18875213.guided.15, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABNJEY010000019.1 Salmonella enterica strain PNUSAS364686 SAMN36704162-rid18875213.denovo.20, whole genome shotgun sequence	63082..63343																																																						avrA	ABNJEY010000012.1	93864..94733	99.195	870	0						
GCA_032364295.1_PDT001827981.1_genomic.fna	Salmonella_enterica	0.5212	300.952 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJEZ010000002.1 Salmonella enterica strain PNUSAS364690 SAMN36704161-rid18875203.denovo.02, whole genome shotgun sequence	414074..414511	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJEZ010000032.1 Salmonella enterica strain PNUSAS364690 SAMN36704161-rid18875203.guided.25, whole genome shotgun sequence	6527..6964	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJEZ010000001.1	512112..512981	99.425	870	0						
GCA_032364375.1_PDT001828037.1_genomic.fna	Salmonella_enterica	0.522	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJFD010000001.1 Salmonella enterica strain PNUSAS366180 SAMN36705817-rid18875763.denovo.01, whole genome shotgun sequence	834154..834591	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJFD010000031.1 Salmonella enterica strain PNUSAS366180 SAMN36705817-rid18875763.guided.20, whole genome shotgun sequence	2745..3182	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNJFD010000009.1 Salmonella enterica strain PNUSAS366180 SAMN36705817-rid18875763.denovo.09, whole genome shotgun sequence	96200..96341																																																						avrA	ABNJFD010000002.1	147125..147994	98.966	870	0						
GCA_032364435.1_PDT001827930.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJFC010000001.1 Salmonella enterica strain 23OH06CL02-S2 SAMN36703837-rid18874693.denovo.01, whole genome shotgun sequence	774554..774991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJFC010000023.1 Salmonella enterica strain 23OH06CL02-S2 SAMN36703837-rid18874693.guided.12, whole genome shotgun sequence	26922..27359	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJFC010000002.1	553468..554337	99.54	870	0						
GCA_032364455.1_PDT001827955.1_genomic.fna	Salmonella_enterica	0.5206	475.601 KB	4	aroC_110,dnaN_123,hemD_40,hisD_112,purE_90,sucA_114,thrA_102	4330	9:c:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_110	dnaN	100	100	dnaN_123	hemD	100	100	hemD_40	hisD	100	100	hisD_112	purE	100	100	purE_90	sucA	100	100	sucA_114	thrA	100	100	thrA_102	9	c	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Alabama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJFH010000001.1 Salmonella enterica strain PNUSAS366137 SAMN36703971-rid18874943.denovo.01, whole genome shotgun sequence	283786..284223	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.94	436/438	ABNJFH010000028.1 Salmonella enterica strain PNUSAS366137 SAMN36703971-rid18874943.guided.21, whole genome shotgun sequence	1..436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.36	643 / 643	ABNJFH010000015.1 Salmonella enterica strain PNUSAS366137 SAMN36703971-rid18874943.denovo.15, whole genome shotgun sequence	15751..16393																																																																	
GCA_032364475.1_PDT001827953.1_genomic.fna	Salmonella_enterica	0.5228	443.915 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJFJ010000001.1 Salmonella enterica strain PNUSAS366135 SAMN36703973-rid18874923.denovo.01, whole genome shotgun sequence	790294..790731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJFJ010000024.1 Salmonella enterica strain PNUSAS366135 SAMN36703973-rid18874923.guided.18, whole genome shotgun sequence	2733..3170	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJFJ010000005.1	183125..183994	98.966	870	0						
GCA_032364495.1_PDT001827954.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJFI010000001.1 Salmonella enterica strain PNUSAS366134 SAMN36703968-rid18874933.denovo.01, whole genome shotgun sequence	501647..502084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJFI010000013.1 Salmonella enterica strain PNUSAS366134 SAMN36703968-rid18874933.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNJFI010000017.1 Salmonella enterica strain PNUSAS366134 SAMN36703968-rid18874933.denovo.17, whole genome shotgun sequence	3388..3649																																																avrA	ABNJFI010000002.1	553636..554505	99.54	870	0						
GCA_032364505.1_PDT001827951.1_genomic.fna	Salmonella_enterica	0.5206	755.648 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJFK010000001.1 Salmonella enterica strain PNUSAS366138 SAMN36703970-rid18874903.denovo.01, whole genome shotgun sequence	397391..397828	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.42	419/438	ABNJFK010000026.1 Salmonella enterica strain PNUSAS366138 SAMN36703970-rid18874903.guided.22, whole genome shotgun sequence	1..419	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJFK010000003.1	556203..557071	99.425	870	0						
GCA_032364575.1_PDT001827948.1_genomic.fna	Salmonella_enterica	0.5182	226.065 KB	8	aroC_210,dnaN_11,hemD_17,hisD_113,purE_33,sucA_107,thrA_4	2519	8:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_210	dnaN	100	100	dnaN_11	hemD	100	100	hemD_17	hisD	100	100	hisD_113	purE	100	100	purE_33	sucA	100	100	sucA_107	thrA	100	100	thrA_4	8	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Glostrup or Chomedey	The predicted serotypes share the same general formula: 8:z10:e,n,z15 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJFN010000002.1 Salmonella enterica strain PNUSAS366136 SAMN36703972-rid18874873.denovo.02, whole genome shotgun sequence	41649..42086	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJFN010000085.1 Salmonella enterica strain PNUSAS366136 SAMN36703972-rid18874873.guided.48, whole genome shotgun sequence	4903..5340	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNJFN010000036.1 Salmonella enterica strain PNUSAS366136 SAMN36703972-rid18874873.denovo.37, whole genome shotgun sequence	17721..18363																																																																	
GCA_032364695.1_PDT001827934.1_genomic.fna	Salmonella_enterica	0.5217	203.759 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,sul1,sul1,sul1,tet(A),tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJFV010000001.1 Salmonella enterica strain 23OH06CB03-S1 SAMN36703833-rid18874733.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJFV010000025.1 Salmonella enterica strain 23OH06CB03-S1 SAMN36703833-rid18874733.denovo.29, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJFV010000025.1 Salmonella enterica strain 23OH06CB03-S1 SAMN36703833-rid18874733.denovo.29, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNJFV010000049.1 Salmonella enterica strain 23OH06CB03-S1 SAMN36703833-rid18874733.guided.24, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJFV010000050.1 Salmonella enterica strain 23OH06CB03-S1 SAMN36703833-rid18874733.guided.27, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJFV010000050.1 Salmonella enterica strain 23OH06CB03-S1 SAMN36703833-rid18874733.guided.27, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aadA1	99.62	792/792	ABNJFV010000051.1 Salmonella enterica strain 23OH06CB03-S1 SAMN36703833-rid18874733.guided.28, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.62	792/792	ABNJFV010000051.1 Salmonella enterica strain 23OH06CB03-S1 SAMN36703833-rid18874733.guided.28, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNJFV010000025.1 Salmonella enterica strain 23OH06CB03-S1 SAMN36703833-rid18874733.denovo.29, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJFV010000050.1 Salmonella enterica strain 23OH06CB03-S1 SAMN36703833-rid18874733.guided.27, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJFV010000051.1 Salmonella enterica strain 23OH06CB03-S1 SAMN36703833-rid18874733.guided.28, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNJFV010000025.1 Salmonella enterica strain 23OH06CB03-S1 SAMN36703833-rid18874733.denovo.29, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJFV010000050.1 Salmonella enterica strain 23OH06CB03-S1 SAMN36703833-rid18874733.guided.27, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJFV010000051.1 Salmonella enterica strain 23OH06CB03-S1 SAMN36703833-rid18874733.guided.28, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNJFV010000028.1 Salmonella enterica strain 23OH06CB03-S1 SAMN36703833-rid18874733.denovo.33, whole genome shotgun sequence	9108..9667																																																						avrA	ABNJFV010000002.1	149828..150697	99.655	870	0						
GCA_032364715.1_PDT001827931.1_genomic.fna	Salmonella_enterica	0.5201	419.663 KB	5	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	2	IncFIB(AP001918),IncFII,IncFII	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJFW010000001.1 Salmonella enterica strain 23OH06CL02-S1 SAMN36703836-rid18874703.denovo.01, whole genome shotgun sequence	605210..605647	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJFW010000021.1 Salmonella enterica strain 23OH06CL02-S1 SAMN36703836-rid18874703.denovo.23, whole genome shotgun sequence	6683..7519	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJFW010000021.1 Salmonella enterica strain 23OH06CL02-S1 SAMN36703836-rid18874703.denovo.23, whole genome shotgun sequence	7519..8322	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNJFW010000034.1 Salmonella enterica strain 23OH06CL02-S1 SAMN36703836-rid18874703.guided.24, whole genome shotgun sequence	9060..9497	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJFW010000036.1 Salmonella enterica strain 23OH06CL02-S1 SAMN36703836-rid18874703.guided.27, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJFW010000036.1 Salmonella enterica strain 23OH06CL02-S1 SAMN36703836-rid18874703.guided.27, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNJFW010000022.1 Salmonella enterica strain 23OH06CL02-S1 SAMN36703836-rid18874703.denovo.25, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJFW010000035.1 Salmonella enterica strain 23OH06CL02-S1 SAMN36703836-rid18874703.guided.26, whole genome shotgun sequence	4199..5404	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNJFW010000016.1 Salmonella enterica strain 23OH06CL02-S1 SAMN36703836-rid18874703.denovo.18, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNJFW010000021.1 Salmonella enterica strain 23OH06CL02-S1 SAMN36703836-rid18874703.denovo.23, whole genome shotgun sequence	5799..6060		enterobacteriales	IncFII	96.95	262 / 261	ABNJFW010000036.1 Salmonella enterica strain 23OH06CL02-S1 SAMN36703836-rid18874703.guided.27, whole genome shotgun sequence	4572..4833																																									avrA	ABNJFW010000002.1	155723..156592	99.655	870	0						
GCA_032364735.1_PDT001827927.1_genomic.fna	Salmonella_enterica	0.5185	240.158 KB	7	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	5	IncFIB(AP001918),IncFII,IncFII(pSE11),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJFY010000013.1 Salmonella enterica strain 23OH05CB12-S2 SAMN36703840-rid18874663.denovo.13, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJFY010000026.1 Salmonella enterica strain 23OH05CB12-S2 SAMN36703840-rid18874663.denovo.28, whole genome shotgun sequence	33995..34831	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNJFY010000026.1 Salmonella enterica strain 23OH05CB12-S2 SAMN36703840-rid18874663.denovo.28, whole genome shotgun sequence	34831..35634	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNJFY010000074.1 Salmonella enterica strain 23OH05CB12-S2 SAMN36703840-rid18874663.guided.25, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJFY010000077.1 Salmonella enterica strain 23OH05CB12-S2 SAMN36703840-rid18874663.guided.53, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNJFY010000077.1 Salmonella enterica strain 23OH05CB12-S2 SAMN36703840-rid18874663.guided.53, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNJFY010000043.1 Salmonella enterica strain 23OH05CB12-S2 SAMN36703840-rid18874663.denovo.46, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJFY010000076.1 Salmonella enterica strain 23OH05CB12-S2 SAMN36703840-rid18874663.guided.47, whole genome shotgun sequence	4199..5404	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNJFY010000034.1 Salmonella enterica strain 23OH05CB12-S2 SAMN36703840-rid18874663.denovo.36, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNJFY010000026.1 Salmonella enterica strain 23OH05CB12-S2 SAMN36703840-rid18874663.denovo.28, whole genome shotgun sequence	33111..33372		enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNJFY010000029.1 Salmonella enterica strain 23OH05CB12-S2 SAMN36703840-rid18874663.denovo.31, whole genome shotgun sequence	10248..10507		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNJFY010000031.1 Salmonella enterica strain 23OH05CB12-S2 SAMN36703840-rid18874663.denovo.33, whole genome shotgun sequence	17259..17400		enterobacteriales	IncX1	100	373 / 373	ABNJFY010000046.1 Salmonella enterica strain 23OH05CB12-S2 SAMN36703840-rid18874663.denovo.50, whole genome shotgun sequence	2153..2525																											avrA	ABNJFY010000014.1	102634..103503	99.655	870	0						
GCA_032364755.1_PDT001827928.1_genomic.fna	Salmonella_enterica	0.5198	237.354 KB	7	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJFX010000013.1 Salmonella enterica strain 23OH06CB09-S2 SAMN36703839-rid18874673.denovo.13, whole genome shotgun sequence	86586..87023	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJFX010000069.1 Salmonella enterica strain 23OH06CB09-S2 SAMN36703839-rid18874673.guided.35, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	ABNJFX010000045.1 Salmonella enterica strain 23OH06CB09-S2 SAMN36703839-rid18874673.denovo.48, whole genome shotgun sequence	1831..2512	enterobacteriales	IncFII	96.56	262 / 261	ABNJFX010000027.1 Salmonella enterica strain 23OH06CB09-S2 SAMN36703839-rid18874673.denovo.29, whole genome shotgun sequence	36476..36737		enterobacteriales	IncX1	100	373 / 373	ABNJFX010000036.1 Salmonella enterica strain 23OH06CB09-S2 SAMN36703839-rid18874673.denovo.39, whole genome shotgun sequence	2153..2525																																									avrA	ABNJFX010000014.1	102634..103503	99.655	870	0						
GCA_032365015.1_PDT001827901.1_genomic.fna	Salmonella_enterica	0.5226	143.301 KB	11	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJGJ010000033.1 Salmonella enterica strain PNUSAS366133 SAMN36703830-rid18874403.denovo.33, whole genome shotgun sequence	16326..16763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJGJ010000083.1 Salmonella enterica strain PNUSAS366133 SAMN36703830-rid18874403.guided.62, whole genome shotgun sequence	391..828	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032365035.1_PDT001827899.1_genomic.fna	Salmonella_enterica	0.5215	400.829 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJGL010000001.1 Salmonella enterica strain PNUSAS366108 SAMN36702585-rid18874383.denovo.01, whole genome shotgun sequence	406619..407056	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJGL010000027.1 Salmonella enterica strain PNUSAS366108 SAMN36702585-rid18874383.guided.21, whole genome shotgun sequence	5930..6367	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJGL010000018.1 Salmonella enterica strain PNUSAS366108 SAMN36702585-rid18874383.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNJGL010000015.1 Salmonella enterica strain PNUSAS366108 SAMN36702585-rid18874383.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNJGL010000002.1	553636..554505	99.54	870	0						
GCA_032365055.1_PDT001827900.1_genomic.fna	Salmonella_enterica	0.5211	406.408 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJGK010000001.1 Salmonella enterica strain PNUSAS366099 SAMN36702589-rid18874393.denovo.01, whole genome shotgun sequence	815099..815536	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJGK010000026.1 Salmonella enterica strain PNUSAS366099 SAMN36702589-rid18874393.guided.15, whole genome shotgun sequence	41768..42205	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJGK010000020.1 Salmonella enterica strain PNUSAS366099 SAMN36702589-rid18874393.denovo.22, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNJGK010000021.1 Salmonella enterica strain PNUSAS366099 SAMN36702589-rid18874393.denovo.24, whole genome shotgun sequence	3390..3651																																																avrA	ABNJGK010000002.1	553187..554056	99.54	870	0						
GCA_032365075.1_PDT001827891.1_genomic.fna	Salmonella_enterica	0.5221	443.026 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJGP010000001.1 Salmonella enterica strain PNUSAS366098 SAMN36702592-rid18874303.denovo.01, whole genome shotgun sequence	396598..397035	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJGP010000025.1 Salmonella enterica strain PNUSAS366098 SAMN36702592-rid18874303.guided.20, whole genome shotgun sequence	312..749	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJGP010000012.1	93870..94740	99.196	871	0						
GCA_032365095.1_PDT001827896.1_genomic.fna	Salmonella_enterica	0.5212	387.632 KB	4	aroC_11,dnaN_10,hemD_13,hisD_13,purE_10,sucA_13,thrA_4	20	4:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJGM010000010.1 Salmonella enterica strain PNUSAS366113 SAMN36702591-rid18874353.denovo.10, whole genome shotgun sequence	15284..15721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJGM010000028.1 Salmonella enterica strain PNUSAS366113 SAMN36702591-rid18874353.guided.21, whole genome shotgun sequence	5135..5572	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNJGM010000003.1 Salmonella enterica strain PNUSAS366113 SAMN36702591-rid18874353.denovo.03, whole genome shotgun sequence	154944..155366	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNJGM010000027.1 Salmonella enterica strain PNUSAS366113 SAMN36702591-rid18874353.guided.20, whole genome shotgun sequence	10954..11376	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032365105.1_PDT001827893.1_genomic.fna	Salmonella_enterica	0.5214	321.135 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJGO010000001.1 Salmonella enterica strain PNUSAS366096 SAMN36702593-rid18874323.denovo.01, whole genome shotgun sequence	937157..937594	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNJGO010000031.1 Salmonella enterica strain PNUSAS366096 SAMN36702593-rid18874323.guided.25, whole genome shotgun sequence	6926..7363	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJGO010000001.1	496996..497864	99.425	870	0						
GCA_032365125.1_PDT001827895.1_genomic.fna	Salmonella_enterica	0.5228	227.051 KB	6	aroC_5,dnaN_14,hemD_21,hisD_9,purE_6,sucA_12,thrA_17	49	4:z10:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	z10	1,2	Salmonella enterica subspecies enterica (subspecies I)	Haifa		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJGN010000003.1 Salmonella enterica strain PNUSAS366106 SAMN36702583-rid18874343.denovo.03, whole genome shotgun sequence	145145..145582	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJGN010000043.1 Salmonella enterica strain PNUSAS366106 SAMN36702583-rid18874343.guided.39, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJGN010000006.1	86078..86947	99.655	870	0						
GCA_032365175.1_PDT001827889.1_genomic.fna	Salmonella_enterica	0.5202	200.87 KB	9	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22*	1612*	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	99.8003992015968	100	thrA_22*	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJGQ010000013.1 Salmonella enterica strain PNUSAS366109 SAMN36702582-rid18874283.denovo.13, whole genome shotgun sequence	37880..38317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJGQ010000054.1 Salmonella enterica strain PNUSAS366109 SAMN36702582-rid18874283.guided.40, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNJGQ010000024.1 Salmonella enterica strain PNUSAS366109 SAMN36702582-rid18874283.denovo.24, whole genome shotgun sequence	62737..63379																																																																	
GCA_032365195.1_PDT001827884.1_genomic.fna	Salmonella_enterica	0.5224	398.132 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJGT010000001.1 Salmonella enterica strain PNUSAS366097 SAMN36702498-rid18874233.denovo.01, whole genome shotgun sequence	838577..839014	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJGT010000041.1 Salmonella enterica strain PNUSAS366097 SAMN36702498-rid18874233.guided.16, whole genome shotgun sequence	13035..13472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJGT010000002.1	183156..184025	98.851	870	0						
GCA_032365215.1_PDT001827888.1_genomic.fna	Salmonella_enterica	0.5216	191.427 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJGR010000001.1 Salmonella enterica strain PNUSAS366093 SAMN36702497-rid18874273.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJGR010000044.1 Salmonella enterica strain PNUSAS366093 SAMN36702497-rid18874273.guided.32, whole genome shotgun sequence	9199..9636	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJGR010000004.1	156163..157031	99.77	870	0						
GCA_032365235.1_PDT001827887.1_genomic.fna	Salmonella_enterica	0.5216	222.796 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_121,thrA_2	376	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_121	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJGS010000002.1 Salmonella enterica strain PNUSAS366105 SAMN36702499-rid18874263.denovo.02, whole genome shotgun sequence	207360..207797	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJGS010000047.1 Salmonella enterica strain PNUSAS366105 SAMN36702499-rid18874263.guided.32, whole genome shotgun sequence	13456..13893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJGS010000018.1 Salmonella enterica strain PNUSAS366105 SAMN36702499-rid18874263.denovo.18, whole genome shotgun sequence	6821..7463	enterobacteriales	IncFII(S)	100	262 / 262	ABNJGS010000018.1 Salmonella enterica strain PNUSAS366105 SAMN36702499-rid18874263.denovo.18, whole genome shotgun sequence	22527..22788																																																avrA	ABNJGS010000001.1	450474..451343	99.885	870	0						
GCA_032365255.1_PDT001827882.1_genomic.fna	Salmonella_enterica	0.5212	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJGU010000001.1 Salmonella enterica strain PNUSAS366101 SAMN36702495-rid18874213.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJGU010000026.1 Salmonella enterica strain PNUSAS366101 SAMN36702495-rid18874213.guided.19, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJGU010000017.1 Salmonella enterica strain PNUSAS366101 SAMN36702495-rid18874213.denovo.18, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNJGU010000019.1 Salmonella enterica strain PNUSAS366101 SAMN36702495-rid18874213.denovo.22, whole genome shotgun sequence	3415..3676																																																avrA	ABNJGU010000002.1	553636..554505	99.54	870	0						
GCA_032365275.1_PDT001827883.1_genomic.fna	Salmonella_enterica	0.5213	183.766 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJGV010000001.1 Salmonella enterica strain PNUSAS366103 SAMN36702496-rid18874223.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJGV010000057.1 Salmonella enterica strain PNUSAS366103 SAMN36702496-rid18874223.guided.45, whole genome shotgun sequence	2168..2605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJGV010000006.1	154652..155520	99.77	870	0						
GCA_032365295.1_PDT001827881.1_genomic.fna	Salmonella_enterica	0.5213	592.205 KB	4	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJGW010000001.1 Salmonella enterica strain PNUSAS366111 SAMN36702492-rid18874203.denovo.01, whole genome shotgun sequence	624689..625126	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJGW010000025.1 Salmonella enterica strain PNUSAS366111 SAMN36702492-rid18874203.guided.16, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	ABNJGW010000018.1 Salmonella enterica strain PNUSAS366111 SAMN36702492-rid18874203.denovo.21, whole genome shotgun sequence	1189..1298																																																																	
GCA_032365305.1_PDT001827880.1_genomic.fna	Salmonella_enterica	0.5204	158.376 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNJGX010000010.1 Salmonella enterica strain PNUSAS366110 SAMN36702494-rid18874193.denovo.10, whole genome shotgun sequence	29911..30345	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNJGX010000060.1 Salmonella enterica strain PNUSAS366110 SAMN36702494-rid18874193.guided.41, whole genome shotgun sequence	2518..2952	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	ABNJGX010000020.1 Salmonella enterica strain PNUSAS366110 SAMN36702494-rid18874193.denovo.20, whole genome shotgun sequence	23493..24367																																																																	
GCA_032365335.1_PDT001827857.1_genomic.fna	Salmonella_enterica	0.5189	367.721 KB	4	aroC_43,dnaN_47,hemD_49,hisD_16,purE_41,sucA_15,thrA_3	241	4:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Bredeney		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJGZ010000001.1 Salmonella enterica strain PNUSAS365993 SAMN36702464-rid18873843.denovo.01, whole genome shotgun sequence	412761..413198	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJGZ010000040.1 Salmonella enterica strain PNUSAS365993 SAMN36702464-rid18873843.guided.22, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	97.41	193 / 193	ABNJGZ010000031.1 Salmonella enterica strain PNUSAS365993 SAMN36702464-rid18873843.denovo.34, whole genome shotgun sequence	278..470																																																						avrA	ABNJGZ010000002.1	174847..175715	98.851	870	0						
GCA_032365375.1_PDT001827856.1_genomic.fna	Salmonella_enterica	0.521	599.97 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJHA010000001.1 Salmonella enterica strain PNUSAS365997 SAMN36702463-rid18873833.denovo.01, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNJHA010000030.1 Salmonella enterica strain PNUSAS365997 SAMN36702463-rid18873833.guided.22, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJHA010000015.1 Salmonella enterica strain PNUSAS365997 SAMN36702463-rid18873833.denovo.15, whole genome shotgun sequence	34930..35463																																																						avrA	ABNJHA010000003.1	496788..497656	99.425	870	0						
GCA_032365415.1_PDT001913069.1_genomic.fna	Salmonella_enterica	0.5214	372.914 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJHB010000001.1 Salmonella enterica strain PNUSAS388644 SAMN37664600-rid19588863.denovo.01, whole genome shotgun sequence	498135..498572	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJHB010000033.1 Salmonella enterica strain PNUSAS388644 SAMN37664600-rid19588863.guided.24, whole genome shotgun sequence	2216..2653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJHB010000003.1	140447..141316	99.425	870	0						
GCA_032365515.1_PDT001827855.1_genomic.fna	Salmonella_enterica	0.5228	496.638 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJHI010000001.1 Salmonella enterica strain PNUSAS365992 SAMN36702458-rid18873823.denovo.01, whole genome shotgun sequence	790278..790715	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJHI010000030.1 Salmonella enterica strain PNUSAS365992 SAMN36702458-rid18873823.guided.17, whole genome shotgun sequence	12019..12456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJHI010000002.1	157375..158244	98.966	870	0						
GCA_032365555.1_PDT001827852.1_genomic.fna	Salmonella_enterica	0.5212	412.518 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJHL010000001.1 Salmonella enterica strain PNUSAS366002 SAMN36702459-rid18873803.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJHL010000027.1 Salmonella enterica strain PNUSAS366002 SAMN36702459-rid18873803.guided.20, whole genome shotgun sequence	8844..9281	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNJHL010000021.1 Salmonella enterica strain PNUSAS366002 SAMN36702459-rid18873803.denovo.24, whole genome shotgun sequence	1480..1610	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJHL010000019.1 Salmonella enterica strain PNUSAS366002 SAMN36702459-rid18873803.denovo.21, whole genome shotgun sequence	6818..7460		enterobacteriales	IncFII(S)	100	262 / 262	ABNJHL010000020.1 Salmonella enterica strain PNUSAS366002 SAMN36702459-rid18873803.denovo.22, whole genome shotgun sequence	3404..3665																																									avrA	ABNJHL010000002.1	553224..554093	99.54	870	0						
GCA_032365575.1_PDT001827854.1_genomic.fna	Salmonella_enterica	0.5229	397.812 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJHJ010000001.1 Salmonella enterica strain PNUSAS365996 SAMN36702461-rid18873813.denovo.01, whole genome shotgun sequence	575258..575695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJHJ010000032.1 Salmonella enterica strain PNUSAS365996 SAMN36702461-rid18873813.guided.20, whole genome shotgun sequence	20589..21026	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJHJ010000006.1	149825..150694	99.655	870	0						
GCA_032365595.1_PDT001827851.1_genomic.fna	Salmonella_enterica	0.5216	228.021 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJHM010000001.1 Salmonella enterica strain PNUSAS366003 SAMN36702460-rid18873793.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJHM010000049.1 Salmonella enterica strain PNUSAS366003 SAMN36702460-rid18873793.guided.36, whole genome shotgun sequence	10028..10465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJHM010000018.1 Salmonella enterica strain PNUSAS366003 SAMN36702460-rid18873793.denovo.18, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNJHM010000018.1 Salmonella enterica strain PNUSAS366003 SAMN36702460-rid18873793.denovo.18, whole genome shotgun sequence	30407..30668																																																avrA	ABNJHM010000002.1	209589..210457	100	869	0						
GCA_032365615.1_PDT001827850.1_genomic.fna	Salmonella_enterica	0.5201	416.404 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJHN010000001.1 Salmonella enterica strain PNUSAS366000 SAMN36702456-rid18873783.denovo.01, whole genome shotgun sequence	645054..645491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJHN010000029.1 Salmonella enterica strain PNUSAS366000 SAMN36702456-rid18873783.guided.19, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJHN010000003.1	513747..514615	99.655	870	0						
GCA_032365635.1_PDT001827853.1_genomic.fna	Salmonella_enterica	0.5224	443.099 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJHK010000001.1 Salmonella enterica strain PNUSAS366004 SAMN36702462-rid18874103.denovo.01, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJHK010000038.1 Salmonella enterica strain PNUSAS366004 SAMN36702462-rid18874103.guided.18, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJHK010000004.1	183141..184010	98.851	870	0						
GCA_032365655.1_PDT001827848.1_genomic.fna	Salmonella_enterica	0.5203	185.183 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1237,purE_1,sucA_1,thrA_5	6142	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1237	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNJHP010000011.1 Salmonella enterica strain PNUSAS365999 SAMN36702453-rid18874093.denovo.11, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNJHP010000057.1 Salmonella enterica strain PNUSAS365999 SAMN36702453-rid18874093.guided.39, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																																						
GCA_032365675.1_PDT001827849.1_genomic.fna	Salmonella_enterica	0.5221	279.482 KB	6	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNJHO010000001.1 Salmonella enterica strain PNUSAS366001 SAMN36702457-rid18873773.denovo.01, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNJHO010000031.1 Salmonella enterica strain PNUSAS366001 SAMN36702457-rid18873773.guided.24, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJHO010000005.1	179115..179983	99.655	870	0						
GCA_032365705.1_PDT001827846.1_genomic.fna	Salmonella_enterica	0.5192	187.835 KB	9	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJHS010000007.1 Salmonella enterica strain PNUSAS365994 SAMN36702455-rid18873753.denovo.07, whole genome shotgun sequence	91439..91876	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJHS010000082.1 Salmonella enterica strain PNUSAS365994 SAMN36702455-rid18873753.guided.39, whole genome shotgun sequence	21824..22261	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNJHS010000038.1 Salmonella enterica strain PNUSAS365994 SAMN36702455-rid18873753.denovo.40, whole genome shotgun sequence	11447..12089	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNJHS010000037.1 Salmonella enterica strain PNUSAS365994 SAMN36702455-rid18873753.denovo.38, whole genome shotgun sequence	18874..19456																																																avrA	ABNJHS010000003.1	97470..98339	99.425	870	0						
GCA_032365735.1_PDT001827845.1_genomic.fna	Salmonella_enterica	0.5232	365.952 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJHV010000001.1 Salmonella enterica strain PNUSAS365998 SAMN36702454-rid18873743.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJHV010000031.1 Salmonella enterica strain PNUSAS365998 SAMN36702454-rid18873743.guided.24, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJHV010000002.1	149923..150792	99.655	870	0						
GCA_032365915.1_PDT001827827.1_genomic.fna	Salmonella_enterica	0.5215	565.066 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJIJ010000003.1 Salmonella enterica strain PNUSAS362522 SAMN36702360-rid18873603.denovo.03, whole genome shotgun sequence	596478..596915	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNJIJ010000020.1 Salmonella enterica strain PNUSAS362522 SAMN36702360-rid18873603.guided.18, whole genome shotgun sequence	3588..4025	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJIJ010000002.1	544607..545475	99.425	870	0						
GCA_032365935.1_PDT001827825.1_genomic.fna	Salmonella_enterica	0.5213	268.364 KB	7	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNJIL010000002.1 Salmonella enterica strain PNUSAS363334 SAMN36702351-rid18873583.denovo.02, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNJIL010000044.1 Salmonella enterica strain PNUSAS363334 SAMN36702351-rid18873583.guided.31, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNJIL010000027.1 Salmonella enterica strain PNUSAS363334 SAMN36702351-rid18873583.denovo.28, whole genome shotgun sequence	2973..4178	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJIL010000046.1 Salmonella enterica strain PNUSAS363334 SAMN36702351-rid18873583.guided.33, whole genome shotgun sequence	5566..6771	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJIL010000027.1 Salmonella enterica strain PNUSAS363334 SAMN36702351-rid18873583.denovo.28, whole genome shotgun sequence	10564..10705																																																						avrA	ABNJIL010000007.1	101826..102695	99.77	870	0						
GCA_032365955.1_PDT001827835.1_genomic.fna	Salmonella_enterica	0.5208	139.756 KB	12	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNJIB010000036.1 Salmonella enterica strain PNUSAS362800 SAMN36702364-rid18873663.denovo.37, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNJIB010000083.1 Salmonella enterica strain PNUSAS362800 SAMN36702364-rid18873663.guided.55, whole genome shotgun sequence	12494..12931	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABNJIB010000044.1 Salmonella enterica strain PNUSAS362800 SAMN36702364-rid18873663.denovo.45, whole genome shotgun sequence	11532..11793	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNJIB010000037.1 Salmonella enterica strain PNUSAS362800 SAMN36702364-rid18873663.denovo.38, whole genome shotgun sequence	22329..22470																																																avrA	ABNJIB010000013.1	60548..61417	98.966	870	0						
GCA_032365975.1_PDT001827834.1_genomic.fna	Salmonella_enterica	0.5205	305.517 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJIC010000001.1 Salmonella enterica strain PNUSAS362525 SAMN36702369-rid18873653.denovo.01, whole genome shotgun sequence	800277..800714	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJIC010000041.1 Salmonella enterica strain PNUSAS362525 SAMN36702369-rid18873653.guided.23, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJIC010000002.1	551294..552163	99.195	870	0						
GCA_032365995.1_PDT001827833.1_genomic.fna	Salmonella_enterica	0.5199	230.952 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	5	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,floR,floR,qnrS1,qnrS1,tet(A),tet(A)	1	parC_p.T57S	2	IncI1-I(Alpha),IncR	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJID010000001.1 Salmonella enterica strain PNUSAS362801 SAMN36702365-rid18874063.denovo.01, whole genome shotgun sequence	486107..486544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJID010000051.1 Salmonella enterica strain PNUSAS362801 SAMN36702365-rid18874063.guided.28, whole genome shotgun sequence	31789..32226	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNJID010000004.1 Salmonella enterica strain PNUSAS362801 SAMN36702365-rid18874063.denovo.04, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNJID010000052.1 Salmonella enterica strain PNUSAS362801 SAMN36702365-rid18874063.guided.35, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014	floR	98.19	1214/1215	ABNJID010000034.1 Salmonella enterica strain PNUSAS362801 SAMN36702365-rid18874063.denovo.37, whole genome shotgun sequence	8664..9877	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJID010000055.1 Salmonella enterica strain PNUSAS362801 SAMN36702365-rid18874063.guided.43, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNJID010000034.1 Salmonella enterica strain PNUSAS362801 SAMN36702365-rid18874063.denovo.37, whole genome shotgun sequence	1026..1682	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNJID010000054.1 Salmonella enterica strain PNUSAS362801 SAMN36702365-rid18874063.guided.40, whole genome shotgun sequence	1067..1723	Ciprofloxacin	AB187515	tet(A)	100	1275/1275	ABNJID010000034.1 Salmonella enterica strain PNUSAS362801 SAMN36702365-rid18874063.denovo.37, whole genome shotgun sequence	6789..8063	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJID010000054.1 Salmonella enterica strain PNUSAS362801 SAMN36702365-rid18874063.guided.40, whole genome shotgun sequence	6830..8104	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNJID010000027.1 Salmonella enterica strain PNUSAS362801 SAMN36702365-rid18874063.denovo.29, whole genome shotgun sequence	22339..22480	enterobacteriales	IncR	100	251 / 251	ABNJID010000033.1 Salmonella enterica strain PNUSAS362801 SAMN36702365-rid18874063.denovo.36, whole genome shotgun sequence	8313..8563																																																avrA	ABNJID010000002.1	60944..61813	99.195	870	0						
GCA_032366015.1_PDT001827831.1_genomic.fna	Salmonella_enterica	0.5218	100.084 KB	15	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJIF010000034.1 Salmonella enterica strain PNUSAS362510 SAMN36702367-rid18873633.denovo.35, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJIF010000076.1 Salmonella enterica strain PNUSAS362510 SAMN36702367-rid18873633.guided.33, whole genome shotgun sequence	10144..10581	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABNJIF010000040.1 Salmonella enterica strain PNUSAS362510 SAMN36702367-rid18873633.denovo.42, whole genome shotgun sequence	26921..27180																																																																	
GCA_032366035.1_PDT001827832.1_genomic.fna	Salmonella_enterica	0.5207	348.536 KB	6	aroC_72,dnaN_107,hemD_8,hisD_129,purE_107,sucA_109,thrA_530	2565	30:z38:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440II,IncFII(Yp),IncFII(p96A)	aroC	100	100	aroC_72	dnaN	100	100	dnaN_107	hemD	100	100	hemD_8	hisD	100	100	hisD_129	purE	100	100	purE_107	sucA	100	100	sucA_109	thrA	100	100	thrA_530	30	z38	-	Salmonella enterica subspecies enterica (subspecies I)	Ago		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJIE010000009.1 Salmonella enterica strain PNUSAS362541 SAMN36702370-rid18873643.denovo.09, whole genome shotgun sequence	146096..146533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJIE010000030.1 Salmonella enterica strain PNUSAS362541 SAMN36702370-rid18873643.guided.27, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440II	97.16	282 / 282	ABNJIE010000025.1 Salmonella enterica strain PNUSAS362541 SAMN36702370-rid18873643.denovo.28, whole genome shotgun sequence	5136..5417	enterobacteriales	IncFII(Yp)	92.61	230 / 230	ABNJIE010000020.1 Salmonella enterica strain PNUSAS362541 SAMN36702370-rid18873643.denovo.21, whole genome shotgun sequence	51954..52182		enterobacteriales	IncFII(p96A)	99.06	534 / 534	ABNJIE010000021.1 Salmonella enterica strain PNUSAS362541 SAMN36702370-rid18873643.denovo.23, whole genome shotgun sequence	16372..16905																																									avrA	ABNJIE010000005.1	39348..40217	99.195	870	0						
GCA_032366055.1_PDT001827830.1_genomic.fna	Salmonella_enterica	0.5219	762.276 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJIG010000002.1 Salmonella enterica strain PNUSAS362509 SAMN36702368-rid18873623.denovo.02, whole genome shotgun sequence	158922..159359	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJIG010000025.1 Salmonella enterica strain PNUSAS362509 SAMN36702368-rid18873623.guided.11, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJIG010000005.1	173752..174621	99.77	870	0						
GCA_032366075.1_PDT001827828.1_genomic.fna	Salmonella_enterica	0.5212	430.857 KB	5	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJII010000001.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.denovo.01, whole genome shotgun sequence	172274..172711	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJII010000029.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.denovo.31, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABNJII010000036.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.guided.30, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNJII010000037.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.guided.32, whole genome shotgun sequence	2884..3321	Amikacin, Tobramycin	NC_003197	blaCARB-2	100	867/867	ABNJII010000029.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.denovo.31, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNJII010000036.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.guided.30, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNJII010000027.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.denovo.28, whole genome shotgun sequence	6582..7487	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNJII010000041.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.guided.38, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNJII010000025.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.denovo.26, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJII010000040.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.guided.37, whole genome shotgun sequence	546..1759	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNJII010000029.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.denovo.31, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNJII010000036.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.guided.30, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNJII010000027.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.denovo.28, whole genome shotgun sequence	432..1271	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJII010000042.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.guided.39, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNJII010000025.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.denovo.26, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJII010000038.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.guided.33, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNJII010000025.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.denovo.26, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNJII010000038.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.guided.33, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNJII010000021.1 Salmonella enterica strain PNUSAS362535 SAMN36702363-rid18874053.denovo.21, whole genome shotgun sequence	4434..4684																																																						avrA	ABNJII010000004.1	174469..175338	99.77	870	0						
GCA_032366095.1_PDT001827829.1_genomic.fna	Salmonella_enterica	0.5195	280.812 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJIH010000001.1 Salmonella enterica strain PNUSAS362508 SAMN36702366-rid18873613.denovo.01, whole genome shotgun sequence	477368..477805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJIH010000037.1 Salmonella enterica strain PNUSAS362508 SAMN36702366-rid18873613.guided.24, whole genome shotgun sequence	24988..25425	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJIH010000010.1	140075..140943	99.195	870	0						
GCA_032366115.1_PDT001827826.1_genomic.fna	Salmonella_enterica	0.5212	406.14 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJIK010000001.1 Salmonella enterica strain PNUSAS363340 SAMN36702357-rid18873593.denovo.01, whole genome shotgun sequence	815019..815456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJIK010000031.1 Salmonella enterica strain PNUSAS363340 SAMN36702357-rid18873593.guided.25, whole genome shotgun sequence	2528..2965	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJIK010000020.1 Salmonella enterica strain PNUSAS363340 SAMN36702357-rid18873593.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNJIK010000021.1 Salmonella enterica strain PNUSAS363340 SAMN36702357-rid18873593.denovo.22, whole genome shotgun sequence	3423..3684																																																avrA	ABNJIK010000002.1	505304..506173	99.54	870	0						
GCA_032366135.1_PDT001827822.1_genomic.fna	Salmonella_enterica	0.5225	397.494 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440II	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJIN010000001.1 Salmonella enterica strain PNUSAS362540 SAMN36702361-rid18873563.denovo.01, whole genome shotgun sequence	833834..834271	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJIN010000032.1 Salmonella enterica strain PNUSAS362540 SAMN36702361-rid18873563.guided.25, whole genome shotgun sequence	2282..2719	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNJIN010000020.1 Salmonella enterica strain PNUSAS362540 SAMN36702361-rid18873563.denovo.21, whole genome shotgun sequence	1939..2067	enterobacteriales	Col440II	98.23	282 / 282	ABNJIN010000020.1 Salmonella enterica strain PNUSAS362540 SAMN36702361-rid18873563.denovo.21, whole genome shotgun sequence	2645..2926																																																avrA	ABNJIN010000005.1	183240..184109	98.966	870	0						
GCA_032366155.1_PDT001827823.1_genomic.fna	Salmonella_enterica	0.5213	438.302 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJIM010000001.1 Salmonella enterica strain PNUSAS363330 SAMN36702347-rid18874043.denovo.01, whole genome shotgun sequence	633861..634298	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJIM010000027.1 Salmonella enterica strain PNUSAS363330 SAMN36702347-rid18874043.guided.20, whole genome shotgun sequence	8093..8530	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJIM010000015.1 Salmonella enterica strain PNUSAS363330 SAMN36702347-rid18874043.denovo.15, whole genome shotgun sequence	6696..7229																																																						avrA	ABNJIM010000002.1	516805..517674	99.77	870	0						
GCA_032366175.1_PDT001827821.1_genomic.fna	Salmonella_enterica	0.5211	223.58 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,floR,floR,qnrB19,qnrB19,sul2,sul2,sul2,tet(B),tet(B)	0		3	Col(pHAD28),Col(pHAD28),IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJIO010000001.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.denovo.01, whole genome shotgun sequence	458960..459397	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJIO010000046.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.denovo.50, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJIO010000046.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.denovo.50, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aadA1	99.87	792/792	ABNJIO010000047.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.denovo.51, whole genome shotgun sequence	2324..3115	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	ABNJIO010000047.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.denovo.51, whole genome shotgun sequence	2324..3115	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNJIO010000069.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.46, whole genome shotgun sequence	107..544	Amikacin, Tobramycin	NC_003197	aadA1	99.87	792/792	ABNJIO010000075.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.64, whole genome shotgun sequence	1201..1992	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	ABNJIO010000075.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.64, whole genome shotgun sequence	1201..1992	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNJIO010000076.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.67, whole genome shotgun sequence	836..1672	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJIO010000076.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.67, whole genome shotgun sequence	33..836	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNJIO010000077.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.68, whole genome shotgun sequence	836..1672	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNJIO010000077.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.68, whole genome shotgun sequence	34..836	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNJIO010000077.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.68, whole genome shotgun sequence	33..836	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNJIO010000077.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.68, whole genome shotgun sequence	33..836	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNJIO010000077.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.68, whole genome shotgun sequence	33..836	Streptomycin	AF321550	blaTEM-1B	100	861/861	ABNJIO010000057.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.denovo.66, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNJIO010000078.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.69, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.02	1214/1215	ABNJIO010000054.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.denovo.62, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.02	1214/1215	ABNJIO010000074.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.61, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNJIO010000052.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.denovo.59, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNJIO010000073.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.58, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABNJIO010000046.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.denovo.50, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	99.88	816/816	ABNJIO010000071.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.56, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNJIO010000072.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.57, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNJIO010000035.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.denovo.35, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJIO010000070.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.49, whole genome shotgun sequence	2783..3988	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																						enterobacteriales	Col(pHAD28)	100	131 / 131	ABNJIO010000052.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.denovo.59, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNJIO010000073.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.guided.58, whole genome shotgun sequence	2145..2275		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNJIO010000042.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.denovo.44, whole genome shotgun sequence	2057..2738		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNJIO010000027.1 Salmonella enterica strain PNUSAS363333 SAMN36702350-rid18873553.denovo.27, whole genome shotgun sequence	11086..11582																																		avrA	ABNJIO010000002.1	540740..541609	99.885	870	0						
GCA_032366185.1_PDT001827820.1_genomic.fna	Salmonella_enterica	0.5221	263.615 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJIP010000001.1 Salmonella enterica strain PNUSAS362515 SAMN36702343-rid18873543.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJIP010000034.1 Salmonella enterica strain PNUSAS362515 SAMN36702343-rid18873543.guided.14, whole genome shotgun sequence	42437..42874	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNJIP010000028.1 Salmonella enterica strain PNUSAS362515 SAMN36702343-rid18873543.denovo.32, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNJIP010000037.1 Salmonella enterica strain PNUSAS362515 SAMN36702343-rid18873543.guided.30, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNJIP010000028.1 Salmonella enterica strain PNUSAS362515 SAMN36702343-rid18873543.denovo.32, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNJIP010000037.1 Salmonella enterica strain PNUSAS362515 SAMN36702343-rid18873543.guided.30, whole genome shotgun sequence	2044..2174																																																avrA	ABNJIP010000002.1	60548..61417	99.54	870	0						
GCA_032366215.1_PDT001827818.1_genomic.fna	Salmonella_enterica	0.5202	107.85 KB	14	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	IncFII(S),IncFII(SARC14),IncFII(Yp),IncI2(Delta)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNJIR010000040.1 Salmonella enterica strain PNUSAS362526 SAMN36702310-rid18874033.denovo.040, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNJIR010000108.1 Salmonella enterica strain PNUSAS362526 SAMN36702310-rid18874033.guided.071, whole genome shotgun sequence	6790..7227	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABNJIR010000049.1 Salmonella enterica strain PNUSAS362526 SAMN36702310-rid18874033.denovo.049, whole genome shotgun sequence	11532..11793	enterobacteriales	IncFII(SARC14)	94.84	446 / 445	ABNJIR010000072.1 Salmonella enterica strain PNUSAS362526 SAMN36702310-rid18874033.denovo.073, whole genome shotgun sequence	2775..3219		enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABNJIR010000072.1 Salmonella enterica strain PNUSAS362526 SAMN36702310-rid18874033.denovo.073, whole genome shotgun sequence	2302..2514		enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABNJIR010000043.1 Salmonella enterica strain PNUSAS362526 SAMN36702310-rid18874033.denovo.043, whole genome shotgun sequence	29415..29736																																		avrA	ABNJIR010000006.1	86365..87234	98.966	870	0						
GCA_032366235.1_PDT001827817.1_genomic.fna	Salmonella_enterica	0.5224	723.691 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJIT010000001.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.denovo.01, whole genome shotgun sequence	638994..639431	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJIT010000020.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.denovo.24, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABNJIT010000032.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.guided.23, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.76	413/438	ABNJIT010000035.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.guided.29, whole genome shotgun sequence	1..413	Amikacin, Tobramycin	NC_003197	blaCARB-2	100	867/867	ABNJIT010000020.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.denovo.24, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNJIT010000032.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.guided.23, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNJIT010000019.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.denovo.22, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNJIT010000031.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.guided.21, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNJIT010000018.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.denovo.19, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJIT010000034.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.guided.27, whole genome shotgun sequence	1194..2407	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNJIT010000020.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.denovo.24, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNJIT010000032.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.guided.23, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNJIT010000024.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.denovo.32, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJIT010000036.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.guided.31, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNJIT010000018.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.denovo.19, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJIT010000033.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.guided.26, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNJIT010000018.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.denovo.19, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNJIT010000033.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.guided.26, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNJIT010000015.1 Salmonella enterica strain PNUSAS362529 SAMN36702362-rid18874023.denovo.15, whole genome shotgun sequence	4434..4684																																																						avrA	ABNJIT010000002.1	586519..587388	99.77	870	0						
GCA_032366255.1_PDT001827819.1_genomic.fna	Salmonella_enterica	0.5219	186.395 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJIQ010000001.1 Salmonella enterica strain PNUSAS362511 SAMN36702298-rid18873533.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJIQ010000054.1 Salmonella enterica strain PNUSAS362511 SAMN36702298-rid18873533.guided.44, whole genome shotgun sequence	2370..2807	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJIQ010000005.1	98027..98895	99.77	870	0						
GCA_032366275.1_PDT001827815.1_genomic.fna	Salmonella_enterica	0.5214	349.605 KB	4	aroC_5,dnaN_2,hemD_786,hisD_7,purE_6,sucA_6,thrA_11	Unknown	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_786	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJIU010000001.1 Salmonella enterica strain PNUSAS363331 SAMN36702348-rid18873513.denovo.01, whole genome shotgun sequence	294039..294476	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJIU010000035.1 Salmonella enterica strain PNUSAS363331 SAMN36702348-rid18873513.guided.23, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	ABNJIU010000020.1 Salmonella enterica strain PNUSAS363331 SAMN36702348-rid18873513.denovo.20, whole genome shotgun sequence	17580..17839																																																						avrA	ABNJIU010000002.1	140565..141433	99.425	869	0						
GCA_032366295.1_PDT001827816.1_genomic.fna	Salmonella_enterica	0.5191	224.409 KB	7	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJIS010000002.1 Salmonella enterica strain PNUSAS362543 SAMN36702344-rid18873523.denovo.02, whole genome shotgun sequence	511849..512286	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJIS010000039.1 Salmonella enterica strain PNUSAS362543 SAMN36702344-rid18873523.guided.22, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJIS010000021.1 Salmonella enterica strain PNUSAS362543 SAMN36702344-rid18873523.denovo.21, whole genome shotgun sequence	34958..35491																																																						avrA	ABNJIS010000001.1	418655..419524	99.195	870	0						
GCA_032366315.1_PDT001827814.1_genomic.fna	Salmonella_enterica	0.5212	324.294 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJIV010000001.1 Salmonella enterica strain PNUSAS363343 SAMN36702345-rid18873503.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJIV010000028.1 Salmonella enterica strain PNUSAS363343 SAMN36702345-rid18873503.guided.22, whole genome shotgun sequence	8080..8517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJIV010000019.1 Salmonella enterica strain PNUSAS363343 SAMN36702345-rid18873503.denovo.21, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNJIV010000020.1 Salmonella enterica strain PNUSAS363343 SAMN36702345-rid18873503.denovo.23, whole genome shotgun sequence	3392..3653																																																avrA	ABNJIV010000002.1	553636..554505	99.54	870	0						
GCA_032366335.1_PDT001827813.1_genomic.fna	Salmonella_enterica	0.5212	238.812 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	Col8282	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJIY010000001.1 Salmonella enterica strain PNUSAS362513 SAMN36702301-rid18874013.denovo.01, whole genome shotgun sequence	482710..483147	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJIY010000033.1 Salmonella enterica strain PNUSAS362513 SAMN36702301-rid18874013.denovo.37, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJIY010000033.1 Salmonella enterica strain PNUSAS362513 SAMN36702301-rid18874013.denovo.37, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNJIY010000049.1 Salmonella enterica strain PNUSAS362513 SAMN36702301-rid18874013.guided.25, whole genome shotgun sequence	12427..12864	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJIY010000053.1 Salmonella enterica strain PNUSAS362513 SAMN36702301-rid18874013.guided.38, whole genome shotgun sequence	3451..4287	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJIY010000053.1 Salmonella enterica strain PNUSAS362513 SAMN36702301-rid18874013.guided.38, whole genome shotgun sequence	2648..3451	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNJIY010000041.1 Salmonella enterica strain PNUSAS362513 SAMN36702301-rid18874013.denovo.47, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNJIY010000054.1 Salmonella enterica strain PNUSAS362513 SAMN36702301-rid18874013.guided.46, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNJIY010000033.1 Salmonella enterica strain PNUSAS362513 SAMN36702301-rid18874013.denovo.37, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNJIY010000053.1 Salmonella enterica strain PNUSAS362513 SAMN36702301-rid18874013.guided.38, whole genome shotgun sequence	1772..2587	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNJIY010000030.1 Salmonella enterica strain PNUSAS362513 SAMN36702301-rid18874013.denovo.31, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJIY010000051.1 Salmonella enterica strain PNUSAS362513 SAMN36702301-rid18874013.guided.33, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col8282	90.1	202 / 207	ABNJIY010000035.1 Salmonella enterica strain PNUSAS362513 SAMN36702301-rid18874013.denovo.40, whole genome shotgun sequence	191..392																																																						avrA	ABNJIY010000002.1	589500..590369	99.885	870	0						
GCA_032366355.1_PDT001827812.1_genomic.fna	Salmonella_enterica	0.5214	394.338 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJIW010000001.1 Salmonella enterica strain PNUSAS363332 SAMN36702349-rid18873493.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJIW010000027.1 Salmonella enterica strain PNUSAS363332 SAMN36702349-rid18873493.guided.19, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJIW010000002.1	145182..146051	99.31	870	0						
GCA_032366395.1_PDT001827811.1_genomic.fna	Salmonella_enterica	0.522	257.84 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJIX010000002.1 Salmonella enterica strain PNUSAS363329 SAMN36702346-rid18873483.denovo.02, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJIX010000043.1 Salmonella enterica strain PNUSAS363329 SAMN36702346-rid18873483.guided.28, whole genome shotgun sequence	11014..11451	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJIX010000023.1 Salmonella enterica strain PNUSAS363329 SAMN36702346-rid18873483.denovo.23, whole genome shotgun sequence	44724..45366	enterobacteriales	IncFII(S)	100	262 / 262	ABNJIX010000023.1 Salmonella enterica strain PNUSAS363329 SAMN36702346-rid18873483.denovo.23, whole genome shotgun sequence	29378..29639																																																avrA	ABNJIX010000003.1	209589..210457	100	869	0						
GCA_032366655.1_PDT001827808.1_genomic.fna	Salmonella_enterica	0.522	385.933 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJJB010000001.1 Salmonella enterica strain PNUSAS363338 SAMN36702355-rid18874003.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJJB010000027.1 Salmonella enterica strain PNUSAS363338 SAMN36702355-rid18874003.guided.22, whole genome shotgun sequence	2717..3154	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJJB010000002.1	183147..184016	98.966	870	0						
GCA_032366695.1_PDT001827809.1_genomic.fna	Salmonella_enterica	0.5213	430.294 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJJA010000001.1 Salmonella enterica strain PNUSAS362523 SAMN36702307-rid18873463.denovo.01, whole genome shotgun sequence	601625..602062	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJJA010000040.1 Salmonella enterica strain PNUSAS362523 SAMN36702307-rid18873463.guided.22, whole genome shotgun sequence	8809..9246	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJJA010000010.1	140203..141071	99.195	870	0						
GCA_032366715.1_PDT001827810.1_genomic.fna	Salmonella_enterica	0.5204	490.114 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJIZ010000001.1 Salmonella enterica strain PNUSAS362544 SAMN36702304-rid18873473.denovo.01, whole genome shotgun sequence	774411..774848	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJIZ010000021.1 Salmonella enterica strain PNUSAS362544 SAMN36702304-rid18873473.guided.18, whole genome shotgun sequence	4014..4451	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABNJIZ010000014.1 Salmonella enterica strain PNUSAS362544 SAMN36702304-rid18873473.denovo.15, whole genome shotgun sequence	32011..32384																																																						avrA	ABNJIZ010000002.1	553690..554559	99.54	870	0						
GCA_032366755.1_PDT001827806.1_genomic.fna	Salmonella_enterica	0.5213	143.361 KB	10	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNJJD010000034.1 Salmonella enterica strain PNUSAS363336 SAMN36702353-rid18873443.denovo.34, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNJJD010000067.1 Salmonella enterica strain PNUSAS363336 SAMN36702353-rid18873443.guided.49, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.08	131 / 131	ABNJJD010000053.1 Salmonella enterica strain PNUSAS363336 SAMN36702353-rid18873443.denovo.56, whole genome shotgun sequence	3445..3575	enterobacteriales	IncFII(S)	99.62	262 / 262	ABNJJD010000029.1 Salmonella enterica strain PNUSAS363336 SAMN36702353-rid18873443.denovo.29, whole genome shotgun sequence	43515..43776																																																avrA	ABNJJD010000001.1	93997..94866	98.851	870	0						
GCA_032366775.1_PDT001827805.1_genomic.fna	Salmonella_enterica	0.5211	406.45 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJJE010000001.1 Salmonella enterica strain PNUSAS362537 SAMN36702308-rid18873433.denovo.01, whole genome shotgun sequence	774494..774931	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJJE010000027.1 Salmonella enterica strain PNUSAS362537 SAMN36702308-rid18873433.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJJE010000019.1 Salmonella enterica strain PNUSAS362537 SAMN36702308-rid18873433.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNJJE010000020.1 Salmonella enterica strain PNUSAS362537 SAMN36702308-rid18873433.denovo.23, whole genome shotgun sequence	3369..3630																																																avrA	ABNJJE010000002.1	584594..585463	99.54	870	0						
GCA_032366795.1_PDT001827807.1_genomic.fna	Salmonella_enterica	0.5209	331.147 KB	6	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJJC010000001.1 Salmonella enterica strain PNUSAS362514 SAMN36702342-rid18873453.denovo.01, whole genome shotgun sequence	177329..177766	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJJC010000040.1 Salmonella enterica strain PNUSAS362514 SAMN36702342-rid18873453.guided.29, whole genome shotgun sequence	2620..3057	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJJC010000023.1 Salmonella enterica strain PNUSAS362514 SAMN36702342-rid18873453.denovo.24, whole genome shotgun sequence	2077..2610																																																						avrA	ABNJJC010000008.1	60944..61813	99.77	870	0						
GCA_032366815.1_PDT001827804.1_genomic.fna	Salmonella_enterica	0.5218	259.655 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJJF010000002.1 Salmonella enterica strain PNUSAS363342 SAMN36702359-rid18873423.denovo.02, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJJF010000042.1 Salmonella enterica strain PNUSAS363342 SAMN36702359-rid18873423.guided.30, whole genome shotgun sequence	2908..3345	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJJF010000022.1 Salmonella enterica strain PNUSAS363342 SAMN36702359-rid18873423.denovo.22, whole genome shotgun sequence	44739..45381	enterobacteriales	IncFII(S)	100	262 / 262	ABNJJF010000022.1 Salmonella enterica strain PNUSAS363342 SAMN36702359-rid18873423.denovo.22, whole genome shotgun sequence	29393..29654																																																avrA	ABNJJF010000004.1	174641..175509	100	869	0						
GCA_032366835.1_PDT001827803.1_genomic.fna	Salmonella_enterica	0.5213	254.222 KB	5	aroC_5,dnaN_2,hemD_786,hisD_7,purE_6,sucA_6,thrA_11	Unknown	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_786	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJJG010000001.1 Salmonella enterica strain PNUSAS363339 SAMN36702356-rid18873993.denovo.01, whole genome shotgun sequence	294039..294476	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJJG010000038.1 Salmonella enterica strain PNUSAS363339 SAMN36702356-rid18873993.guided.25, whole genome shotgun sequence	20570..21007	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	ABNJJG010000024.1 Salmonella enterica strain PNUSAS363339 SAMN36702356-rid18873993.denovo.24, whole genome shotgun sequence	17580..17839																																																						avrA	ABNJJG010000002.1	140565..141433	99.425	869	0						
GCA_032366855.1_PDT001827801.1_genomic.fna	Salmonella_enterica	0.5216	225.555 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJJI010000001.1 Salmonella enterica strain PNUSAS363341 SAMN36702358-rid18873403.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJJI010000045.1 Salmonella enterica strain PNUSAS363341 SAMN36702358-rid18873403.guided.31, whole genome shotgun sequence	11877..12314	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJJI010000028.1 Salmonella enterica strain PNUSAS363341 SAMN36702358-rid18873403.denovo.28, whole genome shotgun sequence	44718..45360	enterobacteriales	IncFII(S)	100	262 / 262	ABNJJI010000028.1 Salmonella enterica strain PNUSAS363341 SAMN36702358-rid18873403.denovo.28, whole genome shotgun sequence	29372..29633																																																avrA	ABNJJI010000005.1	176090..176958	100	869	0						
GCA_032366875.1_PDT001827802.1_genomic.fna	Salmonella_enterica	0.5204	340.073 KB	6	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJJH010000001.1 Salmonella enterica strain PNUSAS362521 SAMN36702302-rid18873413.denovo.01, whole genome shotgun sequence	566184..566621	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJJH010000039.1 Salmonella enterica strain PNUSAS362521 SAMN36702302-rid18873413.guided.29, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNJJH010000024.1 Salmonella enterica strain PNUSAS362521 SAMN36702302-rid18873413.denovo.24, whole genome shotgun sequence	5937..6579	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNJJH010000023.1 Salmonella enterica strain PNUSAS362521 SAMN36702302-rid18873413.denovo.23, whole genome shotgun sequence	18874..19456																																																avrA	ABNJJH010000003.1	139987..140856	99.425	870	0						
GCA_032366895.1_PDT001827800.1_genomic.fna	Salmonella_enterica	0.5204	301.285 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncI1-I(Alpha)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJJK010000012.1 Salmonella enterica strain PNUSAS363335 SAMN36702352-rid18873393.denovo.12, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJJK010000042.1 Salmonella enterica strain PNUSAS363335 SAMN36702352-rid18873393.guided.30, whole genome shotgun sequence	7487..7924	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJJK010000019.1 Salmonella enterica strain PNUSAS363335 SAMN36702352-rid18873393.denovo.19, whole genome shotgun sequence	34951..35484	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJJK010000015.1 Salmonella enterica strain PNUSAS363335 SAMN36702352-rid18873393.denovo.15, whole genome shotgun sequence	68693..68834																																																avrA	ABNJJK010000001.1	187845..188711	98.966	870	0						
GCA_032366915.1_PDT001827798.1_genomic.fna	Salmonella_enterica	0.5214	412.535 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJJL010000001.1 Salmonella enterica strain PNUSAS362528 SAMN36702305-rid18873383.denovo.01, whole genome shotgun sequence	774212..774649	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJJL010000025.1 Salmonella enterica strain PNUSAS362528 SAMN36702305-rid18873383.guided.17, whole genome shotgun sequence	20627..21064	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJJL010000018.1 Salmonella enterica strain PNUSAS362528 SAMN36702305-rid18873383.denovo.19, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABNJJL010000019.1 Salmonella enterica strain PNUSAS362528 SAMN36702305-rid18873383.denovo.22, whole genome shotgun sequence	3423..3684																																																avrA	ABNJJL010000002.1	553636..554505	99.54	870	0						
GCA_032366925.1_PDT001827799.1_genomic.fna	Salmonella_enterica	0.5214	232.068 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJJJ010000001.1 Salmonella enterica strain PNUSAS362518 SAMN36702297-rid18872993.denovo.01, whole genome shotgun sequence	176096..176533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJJJ010000032.1 Salmonella enterica strain PNUSAS362518 SAMN36702297-rid18872993.guided.25, whole genome shotgun sequence	8555..8992	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNJJJ010000028.1 Salmonella enterica strain PNUSAS362518 SAMN36702297-rid18872993.denovo.31, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJJJ010000024.1 Salmonella enterica strain PNUSAS362518 SAMN36702297-rid18872993.denovo.24, whole genome shotgun sequence	6828..7470		enterobacteriales	IncFII(S)	100	262 / 262	ABNJJJ010000025.1 Salmonella enterica strain PNUSAS362518 SAMN36702297-rid18872993.denovo.26, whole genome shotgun sequence	3392..3653																																									avrA	ABNJJJ010000002.1	553632..554501	99.54	870	0						
GCA_032366955.1_PDT001827796.1_genomic.fna	Salmonella_enterica	0.5203	144.531 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNJJN010000007.1 Salmonella enterica strain PNUSAS362519 SAMN36702299-rid18873373.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNJJN010000067.1 Salmonella enterica strain PNUSAS362519 SAMN36702299-rid18873373.guided.61, whole genome shotgun sequence	755..1189	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032366975.1_PDT001827797.1_genomic.fna	Salmonella_enterica	0.5211	405.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJJM010000001.1 Salmonella enterica strain PNUSAS363350 SAMN36702311-rid18872983.denovo.01, whole genome shotgun sequence	815011..815448	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJJM010000023.1 Salmonella enterica strain PNUSAS363350 SAMN36702311-rid18872983.guided.14, whole genome shotgun sequence	36827..37264	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJJM010000017.1 Salmonella enterica strain PNUSAS363350 SAMN36702311-rid18872983.denovo.20, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABNJJM010000018.1 Salmonella enterica strain PNUSAS363350 SAMN36702311-rid18872983.denovo.21, whole genome shotgun sequence	3402..3663																																																avrA	ABNJJM010000002.1	553211..554080	99.54	870	0						
GCA_032366995.1_PDT001827795.1_genomic.fna	Salmonella_enterica	0.5196	239.834 KB	6	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJJO010000002.1 Salmonella enterica strain PNUSAS362542 SAMN36702309-rid18872973.denovo.02, whole genome shotgun sequence	594927..595364	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJJO010000042.1 Salmonella enterica strain PNUSAS362542 SAMN36702309-rid18872973.guided.31, whole genome shotgun sequence	2413..2850	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJJO010000019.1 Salmonella enterica strain PNUSAS362542 SAMN36702309-rid18872973.denovo.19, whole genome shotgun sequence	34958..35491																																																						avrA	ABNJJO010000001.1	507870..508739	99.195	870	0						
GCA_032367005.1_PDT001827794.1_genomic.fna	Salmonella_enterica	0.5207	174.501 KB	8	aroC_20,dnaN_4,hemD_23,hisD_14,purE_16,sucA_19,thrA_140	423	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_20	dnaN	100	100	dnaN_4	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_19	thrA	100	100	thrA_140	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJJP010000009.1 Salmonella enterica strain PNUSAS362536 SAMN36702303-rid18872963.denovo.09, whole genome shotgun sequence	37880..38317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJJP010000047.1 Salmonella enterica strain PNUSAS362536 SAMN36702303-rid18872963.guided.36, whole genome shotgun sequence	15862..16299	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032367035.1_PDT001827793.1_genomic.fna	Salmonella_enterica	0.5212	405.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJJQ010000001.1 Salmonella enterica strain PNUSAS362530 SAMN36702290-rid18873363.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJJQ010000029.1 Salmonella enterica strain PNUSAS362530 SAMN36702290-rid18873363.guided.15, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNJJQ010000024.1 Salmonella enterica strain PNUSAS362530 SAMN36702290-rid18873363.denovo.27, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJJQ010000019.1 Salmonella enterica strain PNUSAS362530 SAMN36702290-rid18873363.denovo.22, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABNJJQ010000020.1 Salmonella enterica strain PNUSAS362530 SAMN36702290-rid18873363.denovo.23, whole genome shotgun sequence	3415..3676																																									avrA	ABNJJQ010000002.1	553634..554503	99.54	870	0						
GCA_032367055.1_PDT001827792.1_genomic.fna	Salmonella_enterica	0.5203	714.718 KB	3	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNJJR010000001.1 Salmonella enterica strain PNUSAS362534 SAMN36702293-rid18873353.denovo.01, whole genome shotgun sequence	492160..492597	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNJJR010000035.1 Salmonella enterica strain PNUSAS362534 SAMN36702293-rid18873353.guided.21, whole genome shotgun sequence	4031..4468	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJJR010000005.1	104148..105016	99.655	869	0						
GCA_032367075.1_PDT001827791.1_genomic.fna	Salmonella_enterica	0.5154	310.605 KB	6	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	44:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	44	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 44:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNJJS010000010.1 Salmonella enterica strain PNUSAS362539 SAMN36702295-rid18873343.denovo.10, whole genome shotgun sequence	4992..5429	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNJJS010000048.1 Salmonella enterica strain PNUSAS362539 SAMN36702295-rid18873343.guided.30, whole genome shotgun sequence	4359..4796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032367095.1_PDT001827789.1_genomic.fna	Salmonella_enterica	0.521	367.869 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJJU010000001.1 Salmonella enterica strain PNUSAS362520 SAMN36702306-rid18872943.denovo.01, whole genome shotgun sequence	633685..634122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJJU010000032.1 Salmonella enterica strain PNUSAS362520 SAMN36702306-rid18872943.guided.25, whole genome shotgun sequence	11615..12052	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJJU010000018.1 Salmonella enterica strain PNUSAS362520 SAMN36702306-rid18872943.denovo.18, whole genome shotgun sequence	5854..6387																																																						avrA	ABNJJU010000005.1	183624..184493	99.77	870	0						
GCA_032367115.1_PDT001827788.1_genomic.fna	Salmonella_enterica	0.5218	223.292 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJJV010000001.1 Salmonella enterica strain PNUSAS362532 SAMN36702296-rid18873333.denovo.01, whole genome shotgun sequence	458964..459401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJJV010000046.1 Salmonella enterica strain PNUSAS362532 SAMN36702296-rid18873333.guided.33, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJJV010000030.1 Salmonella enterica strain PNUSAS362532 SAMN36702296-rid18873333.denovo.30, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNJJV010000030.1 Salmonella enterica strain PNUSAS362532 SAMN36702296-rid18873333.denovo.30, whole genome shotgun sequence	9325..9586																																																avrA	ABNJJV010000002.1	209733..210602	99.885	870	0						
GCA_032367155.1_PDT001827786.1_genomic.fna	Salmonella_enterica	0.5222	411.847 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJJX010000001.1 Salmonella enterica strain PNUSAS362538 SAMN36702291-rid18873313.denovo.01, whole genome shotgun sequence	683707..684144	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJJX010000024.1 Salmonella enterica strain PNUSAS362538 SAMN36702291-rid18873313.guided.22, whole genome shotgun sequence	2075..2512	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJJX010000002.1	563615..564484	99.77	870	0						
GCA_032367175.1_PDT001827787.1_genomic.fna	Salmonella_enterica	0.5206	324.3 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJJW010000001.1 Salmonella enterica strain PNUSAS362533 SAMN36702292-rid18873323.denovo.01, whole genome shotgun sequence	774297..774734	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJJW010000032.1 Salmonella enterica strain PNUSAS362533 SAMN36702292-rid18873323.guided.26, whole genome shotgun sequence	7468..7905	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJJW010000023.1 Salmonella enterica strain PNUSAS362533 SAMN36702292-rid18873323.denovo.23, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNJJW010000024.1 Salmonella enterica strain PNUSAS362533 SAMN36702292-rid18873323.denovo.25, whole genome shotgun sequence	3390..3651		enterobacteriales	IncX1	98.93	374 / 374	ABNJJW010000018.1 Salmonella enterica strain PNUSAS362533 SAMN36702292-rid18873323.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABNJJW010000002.1	553419..554288	99.54	870	0						
GCA_032367195.1_PDT001827785.1_genomic.fna	Salmonella_enterica	0.5206	406.452 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		4	IncFIB(S),IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJJY010000001.1 Salmonella enterica strain PNUSAS362531 SAMN36702294-rid18872933.denovo.01, whole genome shotgun sequence	774552..774989	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJJY010000019.1 Salmonella enterica strain PNUSAS362531 SAMN36702294-rid18872933.denovo.19, whole genome shotgun sequence	18766..19602	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJJY010000019.1 Salmonella enterica strain PNUSAS362531 SAMN36702294-rid18872933.denovo.19, whole genome shotgun sequence	19602..20405	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNJJY010000031.1 Salmonella enterica strain PNUSAS362531 SAMN36702294-rid18872933.guided.21, whole genome shotgun sequence	20627..21064	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJJY010000033.1 Salmonella enterica strain PNUSAS362531 SAMN36702294-rid18872933.guided.25, whole genome shotgun sequence	3204..4040	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJJY010000033.1 Salmonella enterica strain PNUSAS362531 SAMN36702294-rid18872933.guided.25, whole genome shotgun sequence	2401..3204	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNJJY010000026.1 Salmonella enterica strain PNUSAS362531 SAMN36702294-rid18872933.denovo.31, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNJJY010000035.1 Salmonella enterica strain PNUSAS362531 SAMN36702294-rid18872933.guided.30, whole genome shotgun sequence	3944..4804	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNJJY010000019.1 Salmonella enterica strain PNUSAS362531 SAMN36702294-rid18872933.denovo.19, whole genome shotgun sequence	20466..21281	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNJJY010000033.1 Salmonella enterica strain PNUSAS362531 SAMN36702294-rid18872933.guided.25, whole genome shotgun sequence	1525..2340	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNJJY010000019.1 Salmonella enterica strain PNUSAS362531 SAMN36702294-rid18872933.denovo.19, whole genome shotgun sequence	24794..25993	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJJY010000036.1 Salmonella enterica strain PNUSAS362531 SAMN36702294-rid18872933.guided.33, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJJY010000022.1 Salmonella enterica strain PNUSAS362531 SAMN36702294-rid18872933.denovo.24, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNJJY010000024.1 Salmonella enterica strain PNUSAS362531 SAMN36702294-rid18872933.denovo.28, whole genome shotgun sequence	3393..3654		enterobacteriales	IncN	100	514 / 514	ABNJJY010000019.1 Salmonella enterica strain PNUSAS362531 SAMN36702294-rid18872933.denovo.19, whole genome shotgun sequence	459..972		enterobacteriales	IncX1	98.66	374 / 374	ABNJJY010000016.1 Salmonella enterica strain PNUSAS362531 SAMN36702294-rid18872933.denovo.16, whole genome shotgun sequence	6057..6430																																		avrA	ABNJJY010000002.1	552981..553850	99.54	870	0						
GCA_032367215.1_PDT001827784.1_genomic.fna	Salmonella_enterica	0.5217	257.839 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJJZ010000001.1 Salmonella enterica strain PNUSAS362527 SAMN36702259-rid18872923.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJJZ010000052.1 Salmonella enterica strain PNUSAS362527 SAMN36702259-rid18872923.guided.36, whole genome shotgun sequence	6241..6678	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJJZ010000018.1 Salmonella enterica strain PNUSAS362527 SAMN36702259-rid18872923.denovo.18, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABNJJZ010000018.1 Salmonella enterica strain PNUSAS362527 SAMN36702259-rid18872923.denovo.18, whole genome shotgun sequence	22542..22803																																																avrA	ABNJJZ010000004.1	174651..175519	100	869	0						
GCA_032367235.1_PDT001827783.1_genomic.fna	Salmonella_enterica	0.5209	290.029 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJKA010000011.1 Salmonella enterica strain PNUSAS362516 SAMN36702260-rid18873303.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJKA010000051.1 Salmonella enterica strain PNUSAS362516 SAMN36702260-rid18873303.guided.40, whole genome shotgun sequence	808..1245	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJKA010000021.1 Salmonella enterica strain PNUSAS362516 SAMN36702260-rid18873303.denovo.21, whole genome shotgun sequence	67045..67578																																																						avrA	ABNJKA010000001.1	187683..188549	98.966	870	0						
GCA_032367295.1_PDT001827782.1_genomic.fna	Salmonella_enterica	0.5223	106.568 KB	14	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJKC010000036.1 Salmonella enterica strain PNUSAS362517 SAMN36702261-rid18873293.denovo.36, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJKC010000075.1 Salmonella enterica strain PNUSAS362517 SAMN36702261-rid18873293.guided.58, whole genome shotgun sequence	10144..10581	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABNJKC010000034.1 Salmonella enterica strain PNUSAS362517 SAMN36702261-rid18873293.denovo.34, whole genome shotgun sequence	25281..25540																																																																	
GCA_032367315.1_PDT001827764.1_genomic.fna	Salmonella_enterica	0.5203	490.114 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJKB010000001.1 Salmonella enterica strain 23MO06CB03-S1 SAMN36702032-rid18872833.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJKB010000026.1 Salmonella enterica strain 23MO06CB03-S1 SAMN36702032-rid18872833.guided.16, whole genome shotgun sequence	20612..21049	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJKB010000018.1 Salmonella enterica strain 23MO06CB03-S1 SAMN36702032-rid18872833.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNJKB010000019.1 Salmonella enterica strain 23MO06CB03-S1 SAMN36702032-rid18872833.denovo.21, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.93	374 / 374	ABNJKB010000014.1 Salmonella enterica strain 23MO06CB03-S1 SAMN36702032-rid18872833.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNJKB010000002.1	553714..554583	99.54	870	0						
GCA_032367335.1_PDT001827781.1_genomic.fna	Salmonella_enterica	0.5208	200.851 KB	9	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJKD010000011.1 Salmonella enterica strain PNUSAS365972 SAMN36702120-rid18873283.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNJKD010000052.1 Salmonella enterica strain PNUSAS365972 SAMN36702120-rid18873283.guided.36, whole genome shotgun sequence	12208..12645	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJKD010000053.1 Salmonella enterica strain PNUSAS365972 SAMN36702120-rid18873283.guided.37, whole genome shotgun sequence	12208..12645	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJKD010000027.1 Salmonella enterica strain PNUSAS365972 SAMN36702120-rid18873283.denovo.27, whole genome shotgun sequence	34957..35490																																																						avrA	ABNJKD010000002.1	39606..40472	98.966	870	0						
GCA_032367625.1_PDT001827769.1_genomic.fna	Salmonella_enterica	0.5212	223.105 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJKN010000001.1 Salmonella enterica strain PNUSAS364249 SAMN36702038-rid18872863.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJKN010000053.1 Salmonella enterica strain PNUSAS364249 SAMN36702038-rid18872863.guided.16, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJKN010000018.1 Salmonella enterica strain PNUSAS364249 SAMN36702038-rid18872863.denovo.19, whole genome shotgun sequence	48383..49025	enterobacteriales	IncFII(S)	100	262 / 262	ABNJKN010000018.1 Salmonella enterica strain PNUSAS364249 SAMN36702038-rid18872863.denovo.19, whole genome shotgun sequence	64110..64371																																																avrA	ABNJKN010000010.1	39568..40436	100	869	0						
GCA_032367645.1_PDT001827770.1_genomic.fna	Salmonella_enterica	0.5218	333.002 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJKL010000001.1 Salmonella enterica strain 23MO06CL01-S1 SAMN36702034-rid18872873.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJKL010000024.1 Salmonella enterica strain 23MO06CL01-S1 SAMN36702034-rid18872873.denovo.24, whole genome shotgun sequence	1059..1850	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJKL010000024.1 Salmonella enterica strain 23MO06CL01-S1 SAMN36702034-rid18872873.denovo.24, whole genome shotgun sequence	1059..1850	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNJKL010000042.1 Salmonella enterica strain 23MO06CL01-S1 SAMN36702034-rid18872873.guided.30, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJKL010000045.1 Salmonella enterica strain 23MO06CL01-S1 SAMN36702034-rid18872873.guided.35, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJKL010000045.1 Salmonella enterica strain 23MO06CL01-S1 SAMN36702034-rid18872873.guided.35, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNJKL010000033.1 Salmonella enterica strain 23MO06CL01-S1 SAMN36702034-rid18872873.denovo.38, whole genome shotgun sequence	1091..1966	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNJKL010000047.1 Salmonella enterica strain 23MO06CL01-S1 SAMN36702034-rid18872873.guided.40, whole genome shotgun sequence	769..1644	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNJKL010000035.1 Salmonella enterica strain 23MO06CL01-S1 SAMN36702034-rid18872873.denovo.41, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABNJKL010000048.1 Salmonella enterica strain 23MO06CL01-S1 SAMN36702034-rid18872873.guided.43, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABNJKL010000024.1 Salmonella enterica strain 23MO06CL01-S1 SAMN36702034-rid18872873.denovo.24, whole genome shotgun sequence	2355..3194	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJKL010000045.1 Salmonella enterica strain 23MO06CL01-S1 SAMN36702034-rid18872873.guided.35, whole genome shotgun sequence	2393..3232	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNJKL010000024.1 Salmonella enterica strain 23MO06CL01-S1 SAMN36702034-rid18872873.denovo.24, whole genome shotgun sequence	15711..16910	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJKL010000043.1 Salmonella enterica strain 23MO06CL01-S1 SAMN36702034-rid18872873.guided.31, whole genome shotgun sequence	7268..8467	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNJKL010000028.1 Salmonella enterica strain 23MO06CL01-S1 SAMN36702034-rid18872873.denovo.28, whole genome shotgun sequence	9109..9668																																																						avrA	ABNJKL010000003.1	149828..150697	99.655	870	0						
GCA_032367665.1_PDT001827768.1_genomic.fna	Salmonella_enterica	0.5208	382.677 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJKO010000001.1 Salmonella enterica strain PNUSAS365252 SAMN36702039-rid18872853.denovo.01, whole genome shotgun sequence	477714..478151	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJKO010000035.1 Salmonella enterica strain PNUSAS365252 SAMN36702039-rid18872853.guided.17, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJKO010000002.1	39627..40496	99.31	870	0						
GCA_032367685.1_PDT001827767.1_genomic.fna	Salmonella_enterica	0.5224	337.826 KB	5	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJKP010000001.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.denovo.01, whole genome shotgun sequence	638774..639211	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJKP010000033.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.denovo.37, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNJKP010000043.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.guided.19, whole genome shotgun sequence	9243..9680	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJKP010000050.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.guided.46, whole genome shotgun sequence	15..794	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNJKP010000033.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.denovo.37, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNJKP010000048.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.guided.40, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNJKP010000025.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.denovo.27, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNJKP010000046.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.guided.34, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNJKP010000025.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.denovo.27, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJKP010000049.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.guided.41, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNJKP010000033.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.denovo.37, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNJKP010000048.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.guided.40, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNJKP010000025.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.denovo.27, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJKP010000047.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.guided.38, whole genome shotgun sequence	25..864	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNJKP010000025.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.denovo.27, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJKP010000047.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.guided.38, whole genome shotgun sequence	3540..4814	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNJKP010000025.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.denovo.27, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNJKP010000047.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.guided.38, whole genome shotgun sequence	1909..2382	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNJKP010000031.1 Salmonella enterica strain PNUSAS365271 SAMN36702035-rid18873213.denovo.35, whole genome shotgun sequence	482..732																																																						avrA	ABNJKP010000002.1	552838..553707	99.77	870	0						
GCA_032367705.1_PDT001827766.1_genomic.fna	Salmonella_enterica	0.521	191.39 KB	6	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJKQ010000001.1 Salmonella enterica strain PNUSAS365272 SAMN36702036-rid18873203.denovo.01, whole genome shotgun sequence	477714..478151	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJKQ010000040.1 Salmonella enterica strain PNUSAS365272 SAMN36702036-rid18873203.guided.23, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJKQ010000008.1	39465..40334	99.31	870	0						
GCA_032367725.1_PDT001827763.1_genomic.fna	Salmonella_enterica	0.5215	385.969 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJKU010000001.1 Salmonella enterica strain PNUSAS365273 SAMN36702037-rid18872823.denovo.01, whole genome shotgun sequence	824566..825003	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJKU010000035.1 Salmonella enterica strain PNUSAS365273 SAMN36702037-rid18872823.guided.12, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJKU010000005.1	183105..183974	98.851	870	0						
GCA_032367745.1_PDT001827765.1_genomic.fna	Salmonella_enterica	0.5185	330.642 KB	6	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJKR010000008.1 Salmonella enterica strain 23MO06CG01-S1 SAMN36702033-rid18872843.denovo.08, whole genome shotgun sequence	86588..87025	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJKR010000026.1 Salmonella enterica strain 23MO06CG01-S1 SAMN36702033-rid18872843.denovo.27, whole genome shotgun sequence	33995..34831	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJKR010000026.1 Salmonella enterica strain 23MO06CG01-S1 SAMN36702033-rid18872843.denovo.27, whole genome shotgun sequence	34831..35634	Streptomycin	AF321551	aac(6')-Iaa	98.28	408/438	ABNJKR010000061.1 Salmonella enterica strain 23MO06CG01-S1 SAMN36702033-rid18872843.guided.21, whole genome shotgun sequence	1..408	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJKR010000064.1 Salmonella enterica strain 23MO06CG01-S1 SAMN36702033-rid18872843.guided.51, whole genome shotgun sequence	2932..3768	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJKR010000064.1 Salmonella enterica strain 23MO06CG01-S1 SAMN36702033-rid18872843.guided.51, whole genome shotgun sequence	2129..2932	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNJKR010000043.1 Salmonella enterica strain 23MO06CG01-S1 SAMN36702033-rid18872843.denovo.46, whole genome shotgun sequence	1430..2635	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJKR010000065.1 Salmonella enterica strain 23MO06CG01-S1 SAMN36702033-rid18872843.guided.53, whole genome shotgun sequence	659..1864	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNJKR010000033.1 Salmonella enterica strain 23MO06CG01-S1 SAMN36702033-rid18872843.denovo.35, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNJKR010000026.1 Salmonella enterica strain 23MO06CG01-S1 SAMN36702033-rid18872843.denovo.27, whole genome shotgun sequence	33111..33372		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNJKR010000031.1 Salmonella enterica strain 23MO06CG01-S1 SAMN36702033-rid18872843.denovo.33, whole genome shotgun sequence	16993..17134		enterobacteriales	IncX1	100	373 / 373	ABNJKR010000039.1 Salmonella enterica strain 23MO06CG01-S1 SAMN36702033-rid18872843.denovo.41, whole genome shotgun sequence	2153..2525																																		avrA	ABNJKR010000017.1	83195..84064	99.655	870	0						
GCA_032367765.1_PDT001827762.1_genomic.fna	Salmonella_enterica	0.5227	332.888 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJKS010000001.1 Salmonella enterica strain PNUSAS365254 SAMN36702023-rid18873193.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJKS010000035.1 Salmonella enterica strain PNUSAS365254 SAMN36702023-rid18873193.guided.26, whole genome shotgun sequence	9709..10146	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJKS010000002.1	150351..151220	99.655	870	0						
GCA_032367785.1_PDT001827761.1_genomic.fna	Salmonella_enterica	0.5202	387.954 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNJKT010000004.1 Salmonella enterica strain PNUSAS365257 SAMN36702026-rid18873183.denovo.04, whole genome shotgun sequence	284396..284833	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNJKT010000029.1 Salmonella enterica strain PNUSAS365257 SAMN36702026-rid18873183.guided.22, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032367805.1_PDT001827760.1_genomic.fna	Salmonella_enterica	0.5225	268.871 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJKV010000001.1 Salmonella enterica strain PNUSAS365253 SAMN36702021-rid18872813.denovo.01, whole genome shotgun sequence	460175..460612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJKV010000039.1 Salmonella enterica strain PNUSAS365253 SAMN36702021-rid18872813.guided.28, whole genome shotgun sequence	15118..15555	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJKV010000006.1	94085..94954	99.655	870	0						
GCA_032367825.1_PDT001827759.1_genomic.fna	Salmonella_enterica	0.5205	440.062 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJKW010000001.1 Salmonella enterica strain PNUSAS365259 SAMN36702028-rid18872803.denovo.01, whole genome shotgun sequence	158983..159420	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJKW010000028.1 Salmonella enterica strain PNUSAS365259 SAMN36702028-rid18872803.guided.18, whole genome shotgun sequence	11346..11783	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJKW010000015.1 Salmonella enterica strain PNUSAS365259 SAMN36702028-rid18872803.denovo.15, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNJKW010000015.1 Salmonella enterica strain PNUSAS365259 SAMN36702028-rid18872803.denovo.15, whole genome shotgun sequence	12917..13178		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJKW010000013.1 Salmonella enterica strain PNUSAS365259 SAMN36702028-rid18872803.denovo.13, whole genome shotgun sequence	23047..23188																																									avrA	ABNJKW010000002.1	553198..554067	99.54	870	0						
GCA_032367845.1_PDT001827757.1_genomic.fna	Salmonella_enterica	0.5212	194.27 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJKY010000002.1 Salmonella enterica strain PNUSAS363345 SAMN36702012-rid18873173.denovo.02, whole genome shotgun sequence	31517..31954	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJKY010000034.1 Salmonella enterica strain PNUSAS363345 SAMN36702012-rid18873173.denovo.34, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJKY010000034.1 Salmonella enterica strain PNUSAS363345 SAMN36702012-rid18873173.denovo.34, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNJKY010000070.1 Salmonella enterica strain PNUSAS363345 SAMN36702012-rid18873173.guided.52, whole genome shotgun sequence	161..598	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJKY010000071.1 Salmonella enterica strain PNUSAS363345 SAMN36702012-rid18873173.guided.59, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJKY010000071.1 Salmonella enterica strain PNUSAS363345 SAMN36702012-rid18873173.guided.59, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNJKY010000034.1 Salmonella enterica strain PNUSAS363345 SAMN36702012-rid18873173.denovo.34, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJKY010000071.1 Salmonella enterica strain PNUSAS363345 SAMN36702012-rid18873173.guided.59, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNJKY010000034.1 Salmonella enterica strain PNUSAS363345 SAMN36702012-rid18873173.denovo.34, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJKY010000072.1 Salmonella enterica strain PNUSAS363345 SAMN36702012-rid18873173.guided.60, whole genome shotgun sequence	1866..3065	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNJKY010000042.1 Salmonella enterica strain PNUSAS363345 SAMN36702012-rid18873173.denovo.44, whole genome shotgun sequence	9109..9668																																																						avrA	ABNJKY010000005.1	93808..94677	99.655	870	0						
GCA_032367865.1_PDT001827758.1_genomic.fna	Salmonella_enterica	0.5215	394.024 KB	5	aroC_186,dnaN_35,hemD_78,hisD_75,purE_39,sucA_182,thrA_97	588	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_186	dnaN	100	100	dnaN_35	hemD	100	100	hemD_78	hisD	100	100	hisD_75	purE	100	100	purE_39	sucA	100	100	sucA_182	thrA	100	100	thrA_97	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNJKX010000001.1 Salmonella enterica strain PNUSAS365274 SAMN36702017-rid18872793.denovo.01, whole genome shotgun sequence	476757..477194	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNJKX010000037.1 Salmonella enterica strain PNUSAS365274 SAMN36702017-rid18872793.guided.31, whole genome shotgun sequence	101..538	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.47	129 / 131	ABNJKX010000027.1 Salmonella enterica strain PNUSAS365274 SAMN36702017-rid18872793.denovo.29, whole genome shotgun sequence	1970..2098																																																						avrA	ABNJKX010000007.1	180948..181817	99.54	870	0						
GCA_032367885.1_PDT001827755.1_genomic.fna	Salmonella_enterica	0.5201	238.812 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		3	Col440I,ColRNAI,IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJLB010000001.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.denovo.01, whole genome shotgun sequence	581408..581845	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNJLB010000034.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.denovo.37, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNJLB010000038.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.denovo.42, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJLB010000038.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.denovo.42, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNJLB010000055.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.guided.40, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJLB010000055.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.guided.40, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNJLB010000056.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.guided.45, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNJLB010000057.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.guided.48, whole genome shotgun sequence	149..964	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EU722351	blaTEM-1B	100	861/861	ABNJLB010000043.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.denovo.50, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNJLB010000058.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.guided.49, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNJLB010000038.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.denovo.42, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNJLB010000055.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.guided.40, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNJLB010000031.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJLB010000054.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.guided.34, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col440I	94.59	111 / 114	ABNJLB010000037.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.denovo.41, whole genome shotgun sequence	3175..3285	enterobacteriales	ColRNAI	90.91	132 / 130	ABNJLB010000041.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.denovo.46, whole genome shotgun sequence	320..450		enterobacteriales	IncX1	98.93	374 / 374	ABNJLB010000029.1 Salmonella enterica strain PNUSAS365255 SAMN36702024-rid18872783.denovo.29, whole genome shotgun sequence	32399..32772																																									avrA	ABNJLB010000002.1	621311..622180	99.885	870	0						
GCA_032367905.1_PDT001827756.1_genomic.fna	Salmonella_enterica	0.5216	257.839 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJKZ010000018.1 Salmonella enterica strain PNUSAS365258 SAMN36702027-rid18873163.denovo.18, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJKZ010000048.1 Salmonella enterica strain PNUSAS365258 SAMN36702027-rid18873163.guided.25, whole genome shotgun sequence	19541..19978	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	ABNJKZ010000025.1 Salmonella enterica strain PNUSAS365258 SAMN36702027-rid18873163.denovo.26, whole genome shotgun sequence	17605..18804	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNJKZ010000051.1 Salmonella enterica strain PNUSAS365258 SAMN36702027-rid18873163.guided.40, whole genome shotgun sequence	91..1290	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	100	643 / 643	ABNJKZ010000026.1 Salmonella enterica strain PNUSAS365258 SAMN36702027-rid18873163.denovo.27, whole genome shotgun sequence	44707..45349	enterobacteriales	IncFII(S)	100	262 / 262	ABNJKZ010000026.1 Salmonella enterica strain PNUSAS365258 SAMN36702027-rid18873163.denovo.27, whole genome shotgun sequence	29361..29622		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJKZ010000025.1 Salmonella enterica strain PNUSAS365258 SAMN36702027-rid18873163.denovo.26, whole genome shotgun sequence	37787..37928																																									avrA	ABNJKZ010000005.1	175018..175886	100	869	0						
GCA_032367925.1_PDT001827754.1_genomic.fna	Salmonella_enterica	0.5226	335.713 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJLA010000001.1 Salmonella enterica strain PNUSAS365261 SAMN36702030-rid18872773.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJLA010000039.1 Salmonella enterica strain PNUSAS365261 SAMN36702030-rid18872773.guided.24, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJLA010000002.1	94085..94954	99.655	870	0						
GCA_032367945.1_PDT001827752.1_genomic.fna	Salmonella_enterica	0.5195	149.012 KB	13	aroC_110,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2711	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_110	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNJLD010000002.1 Salmonella enterica strain PNUSAS363344 SAMN36702011-rid18873153.denovo.02, whole genome shotgun sequence	42641..43078	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNJLD010000069.1 Salmonella enterica strain PNUSAS363344 SAMN36702011-rid18873153.guided.34, whole genome shotgun sequence	12295..12732	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNJLD010000041.1 Salmonella enterica strain PNUSAS363344 SAMN36702011-rid18873153.denovo.43, whole genome shotgun sequence	2610..3252	enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABNJLD010000045.1 Salmonella enterica strain PNUSAS363344 SAMN36702011-rid18873153.denovo.47, whole genome shotgun sequence	18534..19126																																																											
GCA_032367965.1_PDT001827753.1_genomic.fna	Salmonella_enterica	0.5213	429.948 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJLC010000001.1 Salmonella enterica strain PNUSAS365256 SAMN36702025-rid18872763.denovo.01, whole genome shotgun sequence	562532..562969	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJLC010000028.1 Salmonella enterica strain PNUSAS365256 SAMN36702025-rid18872763.guided.18, whole genome shotgun sequence	27015..27452	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJLC010000009.1	140191..141059	99.195	870	0						
GCA_032367985.1_PDT001827751.1_genomic.fna	Salmonella_enterica	0.5221	385.535 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJLE010000001.1 Salmonella enterica strain PNUSAS363347 SAMN36702014-rid18873143.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJLE010000033.1 Salmonella enterica strain PNUSAS363347 SAMN36702014-rid18873143.guided.28, whole genome shotgun sequence	2024..2461	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJLE010000002.1	39571..40440	98.966	870	0						
GCA_032368005.1_PDT001827749.1_genomic.fna	Salmonella_enterica	0.521	357.768 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJLG010000001.1 Salmonella enterica strain PNUSAS365276 SAMN36702019-rid18872743.denovo.01, whole genome shotgun sequence	177085..177522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJLG010000032.1 Salmonella enterica strain PNUSAS365276 SAMN36702019-rid18872743.guided.23, whole genome shotgun sequence	2307..2744	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	98.59	142 / 142	ABNJLG010000015.1 Salmonella enterica strain PNUSAS365276 SAMN36702019-rid18872743.denovo.15, whole genome shotgun sequence	70389..70530																																																						avrA	ABNJLG010000002.1	595896..596765	99.77	870	0						
GCA_032368025.1_PDT001827750.1_genomic.fna	Salmonella_enterica	0.5211	456.236 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJLF010000005.1 Salmonella enterica strain PNUSAS363348 SAMN36702015-rid18872753.denovo.05, whole genome shotgun sequence	162533..162970	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJLF010000024.1 Salmonella enterica strain PNUSAS363348 SAMN36702015-rid18872753.guided.14, whole genome shotgun sequence	43391..43828	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJLF010000015.1 Salmonella enterica strain PNUSAS363348 SAMN36702015-rid18872753.denovo.16, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNJLF010000019.1 Salmonella enterica strain PNUSAS363348 SAMN36702015-rid18872753.denovo.22, whole genome shotgun sequence	3402..3663																																																avrA	ABNJLF010000002.1	553391..554260	99.54	870	0						
GCA_032368045.1_PDT001827748.1_genomic.fna	Salmonella_enterica	0.5199	254.522 KB	7	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJLH010000009.1 Salmonella enterica strain PNUSAS365277 SAMN36702020-rid18872733.denovo.09, whole genome shotgun sequence	147579..148016	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJLH010000035.1 Salmonella enterica strain PNUSAS365277 SAMN36702020-rid18872733.guided.25, whole genome shotgun sequence	13503..13940	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNJLH010000017.1 Salmonella enterica strain PNUSAS365277 SAMN36702020-rid18872733.denovo.17, whole genome shotgun sequence	14445..15087																																																																	
GCA_032368065.1_PDT001827747.1_genomic.fna	Salmonella_enterica	0.5198	368.985 KB	6	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_107	307	4:b:1,2	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(D),tet(D)	0		1	Col(pHAD28)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_107	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJLK010000004.1 Salmonella enterica strain PNUSAS365260 SAMN36702029-rid18873133.denovo.04, whole genome shotgun sequence	380333..380770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJLK010000044.1 Salmonella enterica strain PNUSAS365260 SAMN36702029-rid18873133.guided.29, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNJLK010000035.1 Salmonella enterica strain PNUSAS365260 SAMN36702029-rid18873133.denovo.39, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNJLK010000047.1 Salmonella enterica strain PNUSAS365260 SAMN36702029-rid18873133.guided.40, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	tet(D)	100	1185/1185	ABNJLK010000031.1 Salmonella enterica strain PNUSAS365260 SAMN36702029-rid18873133.denovo.35, whole genome shotgun sequence	1641..2825	Doxycycline, Tetracycline	AF467077	tet(D)	100	1185/1185	ABNJLK010000046.1 Salmonella enterica strain PNUSAS365260 SAMN36702029-rid18873133.guided.34, whole genome shotgun sequence	740..1924	Doxycycline, Tetracycline	AF467077																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	100	131 / 131	ABNJLK010000035.1 Salmonella enterica strain PNUSAS365260 SAMN36702029-rid18873133.denovo.39, whole genome shotgun sequence	1150..1280																																																																	
GCA_032368085.1_PDT001827746.1_genomic.fna	Salmonella_enterica	0.5212	239.645 KB	8	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJLJ010000011.1 Salmonella enterica strain PNUSAS363346 SAMN36702013-rid18873123.denovo.11, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJLJ010000054.1 Salmonella enterica strain PNUSAS363346 SAMN36702013-rid18873123.guided.21, whole genome shotgun sequence	42435..42872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJLJ010000024.1 Salmonella enterica strain PNUSAS363346 SAMN36702013-rid18873123.denovo.25, whole genome shotgun sequence	34957..35490																																																						avrA	ABNJLJ010000010.1	39450..40316	98.966	870	0						
GCA_032368105.1_PDT001827744.1_genomic.fna	Salmonella_enterica	0.5216	482.864 KB	4	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNJLL010000001.1 Salmonella enterica strain PNUSAS365269 SAMN36702022-rid18872713.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNJLL010000036.1 Salmonella enterica strain PNUSAS365269 SAMN36702022-rid18872713.guided.19, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJLL010000002.1	523247..524116	99.195	870	0						
GCA_032368125.1_PDT001827743.1_genomic.fna	Salmonella_enterica	0.5223	335.99 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJLM010000001.1 Salmonella enterica strain PNUSAS363349 SAMN36702016-rid18872703.denovo.01, whole genome shotgun sequence	791595..792032	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJLM010000040.1 Salmonella enterica strain PNUSAS363349 SAMN36702016-rid18872703.guided.29, whole genome shotgun sequence	4348..4785	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNJLM010000031.1 Salmonella enterica strain PNUSAS363349 SAMN36702016-rid18872703.denovo.34, whole genome shotgun sequence	1506..1636																																																						avrA	ABNJLM010000009.1	39456..40325	98.966	870	0						
GCA_032368145.1_PDT001827745.1_genomic.fna	Salmonella_enterica	0.5213	565.179 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJLI010000001.1 Salmonella enterica strain PNUSAS365275 SAMN36702018-rid18872723.denovo.01, whole genome shotgun sequence	99977..100414	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNJLI010000025.1 Salmonella enterica strain PNUSAS365275 SAMN36702018-rid18872723.guided.18, whole genome shotgun sequence	20571..21008	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJLI010000002.1	544631..545499	99.425	870	0						
GCA_032368165.1_PDT001827742.1_genomic.fna	Salmonella_enterica	0.5212	489.522 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJLN010000001.1 Salmonella enterica strain PNUSAS364237 SAMN36701999-rid18873113.denovo.01, whole genome shotgun sequence	815076..815513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJLN010000026.1 Salmonella enterica strain PNUSAS364237 SAMN36701999-rid18873113.guided.17, whole genome shotgun sequence	8844..9281	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJLN010000014.1 Salmonella enterica strain PNUSAS364237 SAMN36701999-rid18873113.denovo.16, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNJLN010000011.1 Salmonella enterica strain PNUSAS364237 SAMN36701999-rid18873113.denovo.12, whole genome shotgun sequence	3709..3970																																																avrA	ABNJLN010000002.1	552939..553808	99.54	870	0						
GCA_032368185.1_PDT001827741.1_genomic.fna	Salmonella_enterica	0.5218	205.997 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJLO010000001.1 Salmonella enterica strain PNUSAS365267 SAMN36701987-rid18873103.denovo.01, whole genome shotgun sequence	325562..325999	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJLO010000054.1 Salmonella enterica strain PNUSAS365267 SAMN36701987-rid18873103.guided.35, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032368205.1_PDT001827740.1_genomic.fna	Salmonella_enterica	0.5218	257.644 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	13	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA2,aadA17,blaTEM-1A,blaTEM-1A,lnu(F),lnu(F),floR,floR,qnrB19,qnrB19,sul2,sul2,tet(B),tet(A),tet(A),tet(B),dfrA12,dfrA12	0		3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJLP010000001.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.denovo.01, whole genome shotgun sequence	458970..459407	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJLP010000033.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.denovo.34, whole genome shotgun sequence	3678..4514	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJLP010000033.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.denovo.34, whole genome shotgun sequence	2875..3678	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNJLP010000066.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.guided.30, whole genome shotgun sequence	11501..11938	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJLP010000069.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.guided.40, whole genome shotgun sequence	3719..4555	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJLP010000069.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.guided.40, whole genome shotgun sequence	2916..3719	Streptomycin	AF321551	aadA2	100	792/792	ABNJLP010000072.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.guided.54, whole genome shotgun sequence	950..1741	Spectinomycin, Streptomycin	JQ364967	aadA17	98.86	792/792	ABNJLP010000075.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.guided.62, whole genome shotgun sequence	46..837	Spectinomycin, Streptomycin	FJ460181	blaTEM-1A	100	861/861	ABNJLP010000033.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.denovo.34, whole genome shotgun sequence	977..1837	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNJLP010000069.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.guided.40, whole genome shotgun sequence	1018..1878	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	lnu(F)	100	822/822	ABNJLP010000051.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.denovo.60, whole genome shotgun sequence	74..895	Lincomycin	EU118119	lnu(F)	100	822/822	ABNJLP010000073.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.guided.58, whole genome shotgun sequence	115..936	Lincomycin	EU118119	floR	98.19	1214/1215	ABNJLP010000033.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.denovo.34, whole genome shotgun sequence	7650..8863	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJLP010000071.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.guided.47, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNJLP010000052.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.denovo.61, whole genome shotgun sequence	272..916	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNJLP010000074.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.guided.59, whole genome shotgun sequence	313..957	Ciprofloxacin	EU432277	sul2	100	816/816	ABNJLP010000033.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.denovo.34, whole genome shotgun sequence	1999..2814	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNJLP010000069.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.guided.40, whole genome shotgun sequence	2040..2855	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNJLP010000024.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.denovo.24, whole genome shotgun sequence	1093..2298	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1275/1275	ABNJLP010000033.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.denovo.34, whole genome shotgun sequence	5775..7049	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJLP010000069.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.guided.40, whole genome shotgun sequence	5816..7090	Doxycycline, Tetracycline	AF534183	tet(B)	100	1206/1206	ABNJLP010000070.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.guided.41, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABNJLP010000048.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.denovo.55, whole genome shotgun sequence	725..1222	Trimethoprim	AM040708	dfrA12	100	498/498	ABNJLP010000072.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.guided.54, whole genome shotgun sequence	45..542	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																				enterobacteriales	ColRNAI	90.08	131 / 130	ABNJLP010000038.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.denovo.43, whole genome shotgun sequence	3981..4111	enterobacteriales	IncFIB(S)	100	643 / 643	ABNJLP010000025.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.denovo.25, whole genome shotgun sequence	19583..20225		enterobacteriales	IncFII(S)	100	262 / 262	ABNJLP010000025.1 Salmonella enterica strain PNUSAS365268 SAMN36701988-rid18872693.denovo.25, whole genome shotgun sequence	35310..35571																																									avrA	ABNJLP010000004.1	143595..144464	99.885	870	0						
GCA_032368245.1_PDT001827738.1_genomic.fna	Salmonella_enterica	0.5221	236.105 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJLR010000002.1 Salmonella enterica strain PNUSAS365270 SAMN36701989-rid18872673.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.76	413/438	ABNJLR010000039.1 Salmonella enterica strain PNUSAS365270 SAMN36701989-rid18872673.guided.32, whole genome shotgun sequence	1..413	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJLR010000018.1 Salmonella enterica strain PNUSAS365270 SAMN36701989-rid18872673.denovo.18, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNJLR010000018.1 Salmonella enterica strain PNUSAS365270 SAMN36701989-rid18872673.denovo.18, whole genome shotgun sequence	30407..30668																																																avrA	ABNJLR010000004.1	175018..175886	100	869	0						
GCA_032368265.1_PDT001827737.1_genomic.fna	Salmonella_enterica	0.5212	430.206 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJLS010000001.1 Salmonella enterica strain PNUSAS364248 SAMN36701996-rid18873093.denovo.01, whole genome shotgun sequence	1058907..1059344	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJLS010000025.1 Salmonella enterica strain PNUSAS364248 SAMN36701996-rid18873093.guided.19, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJLS010000014.1 Salmonella enterica strain PNUSAS364248 SAMN36701996-rid18873093.denovo.14, whole genome shotgun sequence	5854..6387																																																						avrA	ABNJLS010000007.1	192358..193228	99.196	871	0						
GCA_032368285.1_PDT001827736.1_genomic.fna	Salmonella_enterica	0.5199	242.986 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJLT010000005.1 Salmonella enterica strain PNUSAS364251 SAMN36701998-rid18873083.denovo.05, whole genome shotgun sequence	147578..148015	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJLT010000042.1 Salmonella enterica strain PNUSAS364251 SAMN36701998-rid18873083.guided.38, whole genome shotgun sequence	1291..1728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNJLT010000022.1 Salmonella enterica strain PNUSAS364251 SAMN36701998-rid18873083.denovo.22, whole genome shotgun sequence	12713..13355																																																																	
GCA_032368305.1_PDT001827739.1_genomic.fna	Salmonella_enterica	0.5213	278.344 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJLQ010000002.1 Salmonella enterica strain PNUSAS364245 SAMN36701997-rid18872683.denovo.02, whole genome shotgun sequence	179699..180136	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJLQ010000046.1 Salmonella enterica strain PNUSAS364245 SAMN36701997-rid18872683.guided.33, whole genome shotgun sequence	7586..8023	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNJLQ010000029.1 Salmonella enterica strain PNUSAS364245 SAMN36701997-rid18872683.denovo.32, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJLQ010000045.1 Salmonella enterica strain PNUSAS364245 SAMN36701997-rid18872683.guided.31, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col156	94.81	154 / 154	ABNJLQ010000032.1 Salmonella enterica strain PNUSAS364245 SAMN36701997-rid18872683.denovo.36, whole genome shotgun sequence	792..945																																																						avrA	ABNJLQ010000001.1	540741..541610	99.885	870	0						
GCA_032368325.1_PDT001827735.1_genomic.fna	Salmonella_enterica	0.5221	412.353 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJLU010000001.1 Salmonella enterica strain PNUSAS365262 SAMN36701982-rid18873073.denovo.01, whole genome shotgun sequence	262758..263195	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJLU010000029.1 Salmonella enterica strain PNUSAS365262 SAMN36701982-rid18873073.guided.22, whole genome shotgun sequence	2886..3323	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJLU010000002.1	516631..517501	99.656	871	0						
GCA_032368345.1_PDT001827734.1_genomic.fna	Salmonella_enterica	0.5216	385.675 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJLV010000003.1 Salmonella enterica strain PNUSAS364238 SAMN36701993-rid18872663.denovo.03, whole genome shotgun sequence	145192..145629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJLV010000047.1 Salmonella enterica strain PNUSAS364238 SAMN36701993-rid18872663.guided.30, whole genome shotgun sequence	2519..2956	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJLV010000021.1 Salmonella enterica strain PNUSAS364238 SAMN36701993-rid18872663.denovo.21, whole genome shotgun sequence	44530..45172	enterobacteriales	IncFII(S)	100	262 / 262	ABNJLV010000021.1 Salmonella enterica strain PNUSAS364238 SAMN36701993-rid18872663.denovo.21, whole genome shotgun sequence	29184..29445																																																avrA	ABNJLV010000001.1	450780..451649	99.885	870	0						
GCA_032368365.1_PDT001827732.1_genomic.fna	Salmonella_enterica	0.5216	229.358 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	13	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aadA2,aadA17,blaTEM-1A,blaTEM-1A,lnu(F),lnu(F),floR,floR,floR,qnrB19,qnrB19,sul2,sul2,tet(B),tet(A),tet(A),tet(B),dfrA12,dfrA12	0		3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJLX010000001.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.denovo.01, whole genome shotgun sequence	482682..483119	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJLX010000032.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.denovo.34, whole genome shotgun sequence	3678..4514	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJLX010000032.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.denovo.34, whole genome shotgun sequence	2875..3678	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNJLX010000059.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.guided.38, whole genome shotgun sequence	3719..4555	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJLX010000059.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.guided.38, whole genome shotgun sequence	2916..3719	Streptomycin	AF321551	aadA2	100	792/792	ABNJLX010000063.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.guided.50, whole genome shotgun sequence	950..1741	Spectinomycin, Streptomycin	JQ364967	aadA17	98.86	792/792	ABNJLX010000066.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.guided.59, whole genome shotgun sequence	46..837	Spectinomycin, Streptomycin	FJ460181	blaTEM-1A	100	861/861	ABNJLX010000032.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.denovo.34, whole genome shotgun sequence	977..1837	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNJLX010000059.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.guided.38, whole genome shotgun sequence	1018..1878	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	lnu(F)	100	822/822	ABNJLX010000047.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.denovo.57, whole genome shotgun sequence	74..895	Lincomycin	EU118119	lnu(F)	100	822/822	ABNJLX010000064.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.guided.55, whole genome shotgun sequence	115..936	Lincomycin	EU118119	floR	98.19	1214/1215	ABNJLX010000032.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.denovo.34, whole genome shotgun sequence	7650..8863	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJLX010000061.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.guided.42, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNJLX010000062.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.guided.43, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNJLX010000048.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.denovo.58, whole genome shotgun sequence	274..918	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNJLX010000065.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.guided.56, whole genome shotgun sequence	314..958	Ciprofloxacin	EU432277	sul2	100	816/816	ABNJLX010000032.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.denovo.34, whole genome shotgun sequence	1999..2814	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNJLX010000059.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.guided.38, whole genome shotgun sequence	2040..2855	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNJLX010000022.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.denovo.22, whole genome shotgun sequence	1093..2298	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1275/1275	ABNJLX010000032.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.denovo.34, whole genome shotgun sequence	5775..7049	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJLX010000059.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.guided.38, whole genome shotgun sequence	5816..7090	Doxycycline, Tetracycline	AF534183	tet(B)	100	1206/1206	ABNJLX010000060.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.guided.39, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABNJLX010000043.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.denovo.51, whole genome shotgun sequence	725..1222	Trimethoprim	AM040708	dfrA12	100	498/498	ABNJLX010000063.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.guided.50, whole genome shotgun sequence	45..542	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																				enterobacteriales	ColRNAI	90.08	131 / 130	ABNJLX010000036.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.denovo.41, whole genome shotgun sequence	3981..4111	enterobacteriales	IncFIB(S)	100	643 / 643	ABNJLX010000028.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.denovo.28, whole genome shotgun sequence	20272..20914		enterobacteriales	IncFII(S)	100	262 / 262	ABNJLX010000028.1 Salmonella enterica strain PNUSAS365264 SAMN36701984-rid18873063.denovo.28, whole genome shotgun sequence	4926..5187																																									avrA	ABNJLX010000004.1	143595..144464	99.885	870	0						
GCA_032368385.1_PDT001827733.1_genomic.fna	Salmonella_enterica	0.5211	276.437 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJLW010000001.1 Salmonella enterica strain PNUSAS364250 SAMN36701991-rid18872653.denovo.01, whole genome shotgun sequence	569491..569928	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJLW010000037.1 Salmonella enterica strain PNUSAS364250 SAMN36701991-rid18872653.guided.26, whole genome shotgun sequence	999..1436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJLW010000006.1	174559..175428	99.885	870	0						
GCA_032368405.1_PDT001827731.1_genomic.fna	Salmonella_enterica	0.5213	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJLY010000001.1 Salmonella enterica strain PNUSAS365278 SAMN36701990-rid18873053.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJLY010000027.1 Salmonella enterica strain PNUSAS365278 SAMN36701990-rid18873053.guided.14, whole genome shotgun sequence	42653..43090	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJLY010000018.1 Salmonella enterica strain PNUSAS365278 SAMN36701990-rid18873053.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNJLY010000020.1 Salmonella enterica strain PNUSAS365278 SAMN36701990-rid18873053.denovo.23, whole genome shotgun sequence	3402..3663																																																avrA	ABNJLY010000002.1	553636..554505	99.54	870	0						
GCA_032368425.1_PDT001827730.1_genomic.fna	Salmonella_enterica	0.5214	370.233 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJLZ010000001.1 Salmonella enterica strain PNUSAS364247 SAMN36701994-rid18873043.denovo.01, whole genome shotgun sequence	560095..560532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJLZ010000032.1 Salmonella enterica strain PNUSAS364247 SAMN36701994-rid18873043.guided.23, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJLZ010000011.1	125816..126684	99.195	870	0						
GCA_032368705.1_PDT001827729.1_genomic.fna	Salmonella_enterica	0.5218	677.361 KB	3	aroC_70,dnaN_7,hemD_10,hisD_10,purE_2,sucA_10,thrA_14	181	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI(Gamma)	aroC	100	100	aroC_70	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_2	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNJMC010000001.1 Salmonella enterica strain PNUSAS365266 SAMN36701986-rid18872643.denovo.01, whole genome shotgun sequence	425190..425627	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNJMC010000032.1 Salmonella enterica strain PNUSAS365266 SAMN36701986-rid18872643.guided.22, whole genome shotgun sequence	3246..3683	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI(Gamma)	100	137 / 141	ABNJMC010000012.1 Salmonella enterica strain PNUSAS365266 SAMN36701986-rid18872643.denovo.12, whole genome shotgun sequence	72324..72460																																																						avrA	ABNJMC010000003.1	523915..524784	99.31	870	0						
GCA_032368725.1_PDT001827728.1_genomic.fna	Salmonella_enterica	0.5208	416.254 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJME010000010.1 Salmonella enterica strain PNUSAS364241 SAMN36701995-rid18872633.denovo.10, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJME010000035.1 Salmonella enterica strain PNUSAS364241 SAMN36701995-rid18872633.guided.19, whole genome shotgun sequence	40134..40571	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJME010000016.1 Salmonella enterica strain PNUSAS364241 SAMN36701995-rid18872633.denovo.16, whole genome shotgun sequence	34333..34866																																																						avrA	ABNJME010000002.1	187682..188548	98.966	870	0						
GCA_032368745.1_PDT001827727.1_genomic.fna	Salmonella_enterica	0.5218	322.06 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJMD010000001.1 Salmonella enterica strain PNUSAS364236 SAMN36701992-rid18873033.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJMD010000044.1 Salmonella enterica strain PNUSAS364236 SAMN36701992-rid18873033.guided.31, whole genome shotgun sequence	10980..11417	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJMD010000026.1 Salmonella enterica strain PNUSAS364236 SAMN36701992-rid18873033.denovo.26, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNJMD010000026.1 Salmonella enterica strain PNUSAS364236 SAMN36701992-rid18873033.denovo.26, whole genome shotgun sequence	9325..9586																																																avrA	ABNJMD010000002.1	208868..209737	99.885	870	0						
GCA_032368765.1_PDT001827726.1_genomic.fna	Salmonella_enterica	0.5208	162.803 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNJMG010000010.1 Salmonella enterica strain PNUSAS365263 SAMN36701983-rid18873023.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNJMG010000059.1 Salmonella enterica strain PNUSAS365263 SAMN36701983-rid18873023.guided.39, whole genome shotgun sequence	16439..16873	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032368785.1_PDT001827724.1_genomic.fna	Salmonella_enterica	0.5222	277.605 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJMH010000003.1 Salmonella enterica strain PNUSAS364239 SAMN36701935-rid18872623.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJMH010000039.1 Salmonella enterica strain PNUSAS364239 SAMN36701935-rid18872623.guided.28, whole genome shotgun sequence	17964..18401	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJMH010000022.1 Salmonella enterica strain PNUSAS364239 SAMN36701935-rid18872623.denovo.22, whole genome shotgun sequence	44739..45381	enterobacteriales	IncFII(S)	100	262 / 262	ABNJMH010000022.1 Salmonella enterica strain PNUSAS364239 SAMN36701935-rid18872623.denovo.22, whole genome shotgun sequence	29393..29654																																																avrA	ABNJMH010000001.1	401397..402265	100	869	0						
GCA_032368805.1_PDT001827723.1_genomic.fna	Salmonella_enterica	0.5217	636.739 KB	3	aroC_139,dnaN_174,hemD_68,hisD_132,purE_133,sucA_9,thrA_168	578	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_139	dnaN	100	100	dnaN_174	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_133	sucA	100	100	sucA_9	thrA	100	100	thrA_168	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJMI010000001.1 Salmonella enterica strain PNUSAS364242 SAMN36701934-rid18872613.denovo.01, whole genome shotgun sequence	145161..145598	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJMI010000023.1 Salmonella enterica strain PNUSAS364242 SAMN36701934-rid18872613.guided.18, whole genome shotgun sequence	4560..4997	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJMI010000002.1	574344..575213	99.195	870	0						
GCA_032368825.1_PDT001827725.1_genomic.fna	Salmonella_enterica	0.5202	205.448 KB	9	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJMF010000002.1 Salmonella enterica strain PNUSAS365265 SAMN36701985-rid18873013.denovo.02, whole genome shotgun sequence	313213..313650	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJMF010000044.1 Salmonella enterica strain PNUSAS365265 SAMN36701985-rid18873013.guided.37, whole genome shotgun sequence	8046..8483	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNJMF010000028.1 Salmonella enterica strain PNUSAS365265 SAMN36701985-rid18873013.denovo.28, whole genome shotgun sequence	32335..32977																																																																	
GCA_032368845.1_PDT001827722.1_genomic.fna	Salmonella_enterica	0.5217	324.613 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJMJ010000003.1 Salmonella enterica strain PNUSAS364240 SAMN36701936-rid18873003.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJMJ010000063.1 Salmonella enterica strain PNUSAS364240 SAMN36701936-rid18873003.guided.47, whole genome shotgun sequence	853..1290	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJMJ010000027.1 Salmonella enterica strain PNUSAS364240 SAMN36701936-rid18873003.denovo.27, whole genome shotgun sequence	30264..30906	enterobacteriales	IncFII(S)	100	262 / 262	ABNJMJ010000027.1 Salmonella enterica strain PNUSAS364240 SAMN36701936-rid18873003.denovo.27, whole genome shotgun sequence	14918..15179		enterobacteriales	IncI(Gamma)	97.81	137 / 141	ABNJMJ010000025.1 Salmonella enterica strain PNUSAS364240 SAMN36701936-rid18873003.denovo.25, whole genome shotgun sequence	29352..29488																																									avrA	ABNJMJ010000001.1	401291..402159	100	869	0						
GCA_032368865.1_PDT001827713.1_genomic.fna	Salmonella_enterica	0.5207	382.363 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJMK010000002.1 Salmonella enterica strain PNUSAS364990 SAMN36701829-rid18872533.denovo.02, whole genome shotgun sequence	79916..80353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJMK010000041.1 Salmonella enterica strain PNUSAS364990 SAMN36701829-rid18872533.guided.23, whole genome shotgun sequence	8006..8443	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJMK010000003.1	145182..146051	99.31	870	0						
GCA_032368935.1_PDT001827696.1_genomic.fna	Salmonella_enterica	0.5221	97.688 KB	16	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJMN010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309786 SAMN36701811-rid18870993.denovo.015, whole genome shotgun sequence	86804..87241	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJMN010000016.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309786 SAMN36701811-rid18870993.denovo.016, whole genome shotgun sequence	4225..5016	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJMN010000016.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309786 SAMN36701811-rid18870993.denovo.016, whole genome shotgun sequence	4225..5016	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNJMN010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309786 SAMN36701811-rid18870993.guided.070, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJMN010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309786 SAMN36701811-rid18870993.guided.083, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJMN010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309786 SAMN36701811-rid18870993.guided.083, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aadA1	99.62	792/792	ABNJMN010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309786 SAMN36701811-rid18870993.guided.084, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.62	792/792	ABNJMN010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309786 SAMN36701811-rid18870993.guided.084, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNJMN010000016.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309786 SAMN36701811-rid18870993.denovo.016, whole genome shotgun sequence	5521..6360	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJMN010000103.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309786 SAMN36701811-rid18870993.guided.089, whole genome shotgun sequence	542..1381	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNJMN010000016.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309786 SAMN36701811-rid18870993.denovo.016, whole genome shotgun sequence	18877..20076	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJMN010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309786 SAMN36701811-rid18870993.guided.076, whole genome shotgun sequence	1583..2782	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNJMN010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309786 SAMN36701811-rid18870993.denovo.063, whole genome shotgun sequence	10177..10736																																																						avrA	ABNJMN010000011.1	81701..82570	99.655	870	0						
GCA_032368955.1_PDT001827692.1_genomic.fna	Salmonella_enterica	0.5222	361.677 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJMO010000001.1 Salmonella enterica strain PNUSAS364978 SAMN36701826-rid18872343.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJMO010000041.1 Salmonella enterica strain PNUSAS364978 SAMN36701826-rid18872343.guided.22, whole genome shotgun sequence	10406..10843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNJMO010000025.1 Salmonella enterica strain PNUSAS364978 SAMN36701826-rid18872343.denovo.28, whole genome shotgun sequence	1506..1636																																																						avrA	ABNJMO010000007.1	39350..40219	98.966	870	0						
GCA_032368975.1_PDT001827683.1_genomic.fna	Salmonella_enterica	0.5224	312.027 KB	5	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNJMP010000005.1 Salmonella enterica strain PNUSAS364986 SAMN36701825-rid18872263.denovo.05, whole genome shotgun sequence	220722..221159	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNJMP010000039.1 Salmonella enterica strain PNUSAS364986 SAMN36701825-rid18872263.guided.23, whole genome shotgun sequence	21915..22352	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJMP010000002.1	512772..513641	99.54	870	0						
GCA_032368995.1_PDT001827675.1_genomic.fna	Salmonella_enterica	0.5205	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJMR010000001.1 Salmonella enterica strain PNUSAS366066 SAMN36701931-rid18872193.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJMR010000029.1 Salmonella enterica strain PNUSAS366066 SAMN36701931-rid18872193.guided.21, whole genome shotgun sequence	3075..3512	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJMR010000012.1 Salmonella enterica strain PNUSAS366066 SAMN36701931-rid18872193.denovo.13, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABNJMR010000017.1 Salmonella enterica strain PNUSAS366066 SAMN36701931-rid18872193.denovo.19, whole genome shotgun sequence	3399..3660		enterobacteriales	IncX1	98.93	374 / 374	ABNJMR010000013.1 Salmonella enterica strain PNUSAS366066 SAMN36701931-rid18872193.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNJMR010000002.1	553362..554231	99.54	870	0						
GCA_032369015.1_PDT001827677.1_genomic.fna	Salmonella_enterica	0.5215	480.955 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJMQ010000001.1 Salmonella enterica strain PNUSAS366061 SAMN36701926-rid18872203.denovo.01, whole genome shotgun sequence	293401..293838	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJMQ010000027.1 Salmonella enterica strain PNUSAS366061 SAMN36701926-rid18872203.guided.21, whole genome shotgun sequence	2018..2455	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJMQ010000013.1 Salmonella enterica strain PNUSAS366061 SAMN36701926-rid18872203.denovo.13, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNJMQ010000016.1 Salmonella enterica strain PNUSAS366061 SAMN36701926-rid18872203.denovo.17, whole genome shotgun sequence	3446..3707																																																avrA	ABNJMQ010000002.1	553627..554496	99.54	870	0						
GCA_032369025.1_PDT001827669.1_genomic.fna	Salmonella_enterica	0.5218	695.863 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJMS010000001.1 Salmonella enterica strain PNUSAS366067 SAMN36701930-rid18872143.denovo.01, whole genome shotgun sequence	510731..511168	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNJMS010000021.1 Salmonella enterica strain PNUSAS366067 SAMN36701930-rid18872143.guided.18, whole genome shotgun sequence	2909..3346	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJMS010000003.1	544677..545545	99.425	870	0						
GCA_032369055.1_PDT001827664.1_genomic.fna	Salmonella_enterica	0.5215	489.747 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	1	Col(pHAD28)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	ABNJMT010000001.1 Salmonella enterica strain PNUSAS366058 SAMN36701918-rid18870943.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABNJMT010000022.1 Salmonella enterica strain PNUSAS366058 SAMN36701918-rid18870943.guided.14, whole genome shotgun sequence	12879..13316	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNJMT010000014.1 Salmonella enterica strain PNUSAS366058 SAMN36701918-rid18870943.denovo.17, whole genome shotgun sequence	3852..3982																																																						avrA	ABNJMT010000002.1	553174..554043	99.54	870	0						
GCA_032369075.1_PDT001827660.1_genomic.fna	Salmonella_enterica	0.5224	560.95 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNJMU010000001.1 Salmonella enterica strain PNUSAS366056 SAMN36701920-rid18872073.denovo.01, whole genome shotgun sequence	997055..997492	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNJMU010000025.1 Salmonella enterica strain PNUSAS366056 SAMN36701920-rid18872073.guided.19, whole genome shotgun sequence	371..808	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJMU010000013.1 Salmonella enterica strain PNUSAS366056 SAMN36701920-rid18872073.denovo.13, whole genome shotgun sequence	68008..68149																																																						avrA	ABNJMU010000003.1	419907..420777	99.426	871	0						
GCA_032369115.1_PDT001827652.1_genomic.fna	Salmonella_enterica	0.5207	489.863 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJMW010000001.1 Salmonella enterica strain PNUSAS365853 SAMN36701908-rid18872003.denovo.01, whole genome shotgun sequence	244941..245378	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJMW010000023.1 Salmonella enterica strain PNUSAS365853 SAMN36701908-rid18872003.guided.18, whole genome shotgun sequence	11563..12000	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABNJMW010000014.1 Salmonella enterica strain PNUSAS365853 SAMN36701908-rid18872003.denovo.14, whole genome shotgun sequence	32011..32384																																																						avrA	ABNJMW010000002.1	553553..554422	99.54	870	0						
GCA_032369135.1_PDT001827648.1_genomic.fna	Salmonella_enterica	0.521	475.453 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(Yp),IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJMX010000001.1 Salmonella enterica strain PNUSAS365624 SAMN36701883-rid18871983.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJMX010000029.1 Salmonella enterica strain PNUSAS365624 SAMN36701883-rid18871983.guided.15, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	92.64	231 / 230	ABNJMX010000015.1 Salmonella enterica strain PNUSAS365624 SAMN36701883-rid18871983.denovo.16, whole genome shotgun sequence	47919..48147	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJMX010000013.1 Salmonella enterica strain PNUSAS365624 SAMN36701883-rid18871983.denovo.13, whole genome shotgun sequence	15875..16016																																																avrA	ABNJMX010000002.1	145175..146044	99.31	870	0						
GCA_032369255.1_PDT001827715.1_genomic.fna	Salmonella_enterica	0.521	403.434 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJNA010000011.1 Salmonella enterica strain PNUSAS364988 SAMN36701823-rid18872553.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJNA010000052.1 Salmonella enterica strain PNUSAS364988 SAMN36701823-rid18872553.guided.25, whole genome shotgun sequence	8084..8521	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJNA010000017.1 Salmonella enterica strain PNUSAS364988 SAMN36701823-rid18872553.denovo.17, whole genome shotgun sequence	34957..35490																																																						avrA	ABNJNA010000001.1	187683..188549	98.966	870	0						
GCA_032369295.1_PDT001827710.1_genomic.fna	Salmonella_enterica	0.5214	246.374 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJNE010000010.1 Salmonella enterica strain PNUSAS364981 SAMN36701822-rid18872503.denovo.10, whole genome shotgun sequence	44146..44583	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJNE010000046.1 Salmonella enterica strain PNUSAS364981 SAMN36701822-rid18872503.guided.33, whole genome shotgun sequence	870..1307	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFII(S)	100	262 / 262	ABNJNE010000033.1 Salmonella enterica strain PNUSAS364981 SAMN36701822-rid18872503.denovo.35, whole genome shotgun sequence	16..277																																																						avrA	ABNJNE010000002.1	553635..554504	99.54	870	0						
GCA_032369395.1_PDT001827686.1_genomic.fna	Salmonella_enterica	0.5225	83.031 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJNK010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.denovo.001, whole genome shotgun sequence	175343..175780	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJNK010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.denovo.059, whole genome shotgun sequence	18441..19232	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJNK010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.denovo.059, whole genome shotgun sequence	18441..19232	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNJNK010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.denovo.091, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNJNK010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.denovo.091, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNJNK010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.guided.073, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJNK010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.guided.079, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJNK010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.guided.079, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNJNK010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.guided.090, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNJNK010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.guided.090, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNJNK010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.denovo.103, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNJNK010000132.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.guided.105, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNJNK010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.denovo.085, whole genome shotgun sequence	3168..4381	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJNK010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.guided.086, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNJNK010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.denovo.059, whole genome shotgun sequence	17097..17936	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJNK010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.guided.079, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNJNK010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.denovo.059, whole genome shotgun sequence	3381..4580	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJNK010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.guided.070, whole genome shotgun sequence	7861..9060	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNJNK010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309779 SAMN36701775-rid18870983.denovo.062, whole genome shotgun sequence	14634..15193																																																						avrA	ABNJNK010000010.1	124387..125256	99.655	870	0						
GCA_032369495.1_PDT001827676.1_genomic.fna	Salmonella_enterica	0.5222	376.536 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJNN010000004.1 Salmonella enterica strain PNUSAS366063 SAMN36701924-rid18870973.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJNN010000038.1 Salmonella enterica strain PNUSAS366063 SAMN36701924-rid18870973.guided.28, whole genome shotgun sequence	6866..7303	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJNN010000015.1 Salmonella enterica strain PNUSAS366063 SAMN36701924-rid18870973.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNJNN010000015.1 Salmonella enterica strain PNUSAS366063 SAMN36701924-rid18870973.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNJNN010000001.1	446309..447177	100	869	0						
GCA_032369515.1_PDT001827672.1_genomic.fna	Salmonella_enterica	0.5219	275.208 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJNQ010000001.1 Salmonella enterica strain PNUSAS366065 SAMN36701932-rid18872173.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJNQ010000042.1 Salmonella enterica strain PNUSAS366065 SAMN36701932-rid18872173.guided.30, whole genome shotgun sequence	5769..6206	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJNQ010000003.1	208425..209293	99.77	870	0						
GCA_032369525.1_PDT001827674.1_genomic.fna	Salmonella_enterica	0.5223	521.125 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJNO010000001.1 Salmonella enterica strain PNUSAS366070 SAMN36701927-rid18870963.denovo.01, whole genome shotgun sequence	683864..684301	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJNO010000025.1 Salmonella enterica strain PNUSAS366070 SAMN36701927-rid18870963.guided.17, whole genome shotgun sequence	2630..3067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJNO010000002.1	563804..564673	99.77	870	0						
GCA_032369555.1_PDT001827668.1_genomic.fna	Salmonella_enterica	0.5208	403.837 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	5	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,qnrS1,qnrS1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJNP010000001.1 Salmonella enterica strain PNUSAS366059 SAMN36701917-rid18872133.denovo.01, whole genome shotgun sequence	486124..486561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJNP010000040.1 Salmonella enterica strain PNUSAS366059 SAMN36701917-rid18872133.guided.33, whole genome shotgun sequence	1616..2053	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNJNP010000004.1 Salmonella enterica strain PNUSAS366059 SAMN36701917-rid18872133.denovo.04, whole genome shotgun sequence	388439..388861	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNJNP010000041.1 Salmonella enterica strain PNUSAS366059 SAMN36701917-rid18872133.guided.40, whole genome shotgun sequence	49..471	Fosfomycin	LAPJ01000014	qnrS1	100	657/657	ABNJNP010000019.1 Salmonella enterica strain PNUSAS366059 SAMN36701917-rid18872133.denovo.19, whole genome shotgun sequence	23886..24542	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNJNP010000037.1 Salmonella enterica strain PNUSAS366059 SAMN36701917-rid18872133.guided.22, whole genome shotgun sequence	28454..29110	Ciprofloxacin	AB187515	tet(A)	100	1200/1200	ABNJNP010000019.1 Salmonella enterica strain PNUSAS366059 SAMN36701917-rid18872133.denovo.19, whole genome shotgun sequence	19276..20475	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJNP010000037.1 Salmonella enterica strain PNUSAS366059 SAMN36701917-rid18872133.guided.22, whole genome shotgun sequence	32521..33720	Doxycycline, Tetracycline	AJ517790	dfrA1	100	474/474	ABNJNP010000019.1 Salmonella enterica strain PNUSAS366059 SAMN36701917-rid18872133.denovo.19, whole genome shotgun sequence	21708..22181	Trimethoprim	X00926	dfrA1	100	474/474	ABNJNP010000037.1 Salmonella enterica strain PNUSAS366059 SAMN36701917-rid18872133.guided.22, whole genome shotgun sequence	30815..31288	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJNP010000002.1	124110..124979	99.195	870	0						
GCA_032369575.1_PDT001827666.1_genomic.fna	Salmonella_enterica	0.5224	337.834 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJNR010000001.1 Salmonella enterica strain PNUSAS366054 SAMN36701922-rid18870953.denovo.01, whole genome shotgun sequence	789056..789493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJNR010000029.1 Salmonella enterica strain PNUSAS366054 SAMN36701922-rid18870953.guided.24, whole genome shotgun sequence	757..1194	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJNR010000002.1	153273..154142	99.195	870	0						
GCA_032369585.1_PDT001827661.1_genomic.fna	Salmonella_enterica	0.5203	245.647 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJNS010000001.1 Salmonella enterica strain PNUSAS366052 SAMN36701915-rid18872083.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJNS010000027.1 Salmonella enterica strain PNUSAS366052 SAMN36701915-rid18872083.denovo.27, whole genome shotgun sequence	1056..1847	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJNS010000027.1 Salmonella enterica strain PNUSAS366052 SAMN36701915-rid18872083.denovo.27, whole genome shotgun sequence	1056..1847	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNJNS010000050.1 Salmonella enterica strain PNUSAS366052 SAMN36701915-rid18872083.guided.36, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJNS010000050.1 Salmonella enterica strain PNUSAS366052 SAMN36701915-rid18872083.guided.36, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNJNS010000053.1 Salmonella enterica strain PNUSAS366052 SAMN36701915-rid18872083.guided.44, whole genome shotgun sequence	1408..1845	Amikacin, Tobramycin	NC_003197	blaCTX-M-65	100	876/876	ABNJNS010000037.1 Salmonella enterica strain PNUSAS366052 SAMN36701915-rid18872083.denovo.40, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNJNS010000052.1 Salmonella enterica strain PNUSAS366052 SAMN36701915-rid18872083.guided.43, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNJNS010000039.1 Salmonella enterica strain PNUSAS366052 SAMN36701915-rid18872083.denovo.42, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABNJNS010000055.1 Salmonella enterica strain PNUSAS366052 SAMN36701915-rid18872083.guided.50, whole genome shotgun sequence	7..423	Fosfomycin	AB522970	sul1	100	840/840	ABNJNS010000027.1 Salmonella enterica strain PNUSAS366052 SAMN36701915-rid18872083.denovo.27, whole genome shotgun sequence	2352..3191	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJNS010000050.1 Salmonella enterica strain PNUSAS366052 SAMN36701915-rid18872083.guided.36, whole genome shotgun sequence	2393..3232	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNJNS010000027.1 Salmonella enterica strain PNUSAS366052 SAMN36701915-rid18872083.denovo.27, whole genome shotgun sequence	15708..16907	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJNS010000051.1 Salmonella enterica strain PNUSAS366052 SAMN36701915-rid18872083.guided.37, whole genome shotgun sequence	141..1340	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNJNS010000031.1 Salmonella enterica strain PNUSAS366052 SAMN36701915-rid18872083.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABNJNS010000004.1	94091..94960	99.655	870	0						
GCA_032369615.1_PDT001827658.1_genomic.fna	Salmonella_enterica	0.5211	113.89 KB	15	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJNU010000010.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309790 SAMN36701912-rid18872053.denovo.010, whole genome shotgun sequence	83635..84072	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJNU010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309790 SAMN36701912-rid18872053.guided.060, whole genome shotgun sequence	7917..8354	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNJNU010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309790 SAMN36701912-rid18872053.denovo.061, whole genome shotgun sequence	2337..2896	enterobacteriales	IncX1	98.93	374 / 374	ABNJNU010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309790 SAMN36701912-rid18872053.denovo.098, whole genome shotgun sequence	1136..1509																																																avrA	ABNJNU010000002.1	150300..151169	99.655	870	0						
GCA_032369635.1_PDT001827659.1_genomic.fna	Salmonella_enterica	0.5215	225.563 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJNT010000001.1 Salmonella enterica strain PNUSAS366057 SAMN36701919-rid18872063.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJNT010000047.1 Salmonella enterica strain PNUSAS366057 SAMN36701919-rid18872063.guided.36, whole genome shotgun sequence	1275..1712	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJNT010000018.1 Salmonella enterica strain PNUSAS366057 SAMN36701919-rid18872063.denovo.18, whole genome shotgun sequence	44629..45271	enterobacteriales	IncFII(S)	100	262 / 262	ABNJNT010000018.1 Salmonella enterica strain PNUSAS366057 SAMN36701919-rid18872063.denovo.18, whole genome shotgun sequence	60356..60617																																																avrA	ABNJNT010000004.1	98459..99328	99.885	870	0						
GCA_032369875.1_PDT001827632.1_genomic.fna	Salmonella_enterica	0.5193	238.812 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	IncI2(Delta),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJOF010000001.1 Salmonella enterica strain PNUSAS365652 SAMN36701889-rid18871833.denovo.01, whole genome shotgun sequence	580943..581380	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJOF010000037.1 Salmonella enterica strain PNUSAS365652 SAMN36701889-rid18871833.denovo.42, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJOF010000037.1 Salmonella enterica strain PNUSAS365652 SAMN36701889-rid18871833.denovo.42, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNJOF010000051.1 Salmonella enterica strain PNUSAS365652 SAMN36701889-rid18871833.guided.30, whole genome shotgun sequence	12354..12791	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJOF010000054.1 Salmonella enterica strain PNUSAS365652 SAMN36701889-rid18871833.guided.40, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJOF010000054.1 Salmonella enterica strain PNUSAS365652 SAMN36701889-rid18871833.guided.40, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNJOF010000039.1 Salmonella enterica strain PNUSAS365652 SAMN36701889-rid18871833.denovo.45, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNJOF010000055.1 Salmonella enterica strain PNUSAS365652 SAMN36701889-rid18871833.guided.44, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNJOF010000037.1 Salmonella enterica strain PNUSAS365652 SAMN36701889-rid18871833.denovo.42, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNJOF010000054.1 Salmonella enterica strain PNUSAS365652 SAMN36701889-rid18871833.guided.40, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNJOF010000031.1 Salmonella enterica strain PNUSAS365652 SAMN36701889-rid18871833.denovo.35, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJOF010000053.1 Salmonella enterica strain PNUSAS365652 SAMN36701889-rid18871833.guided.34, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncI2(Delta)	97.83	322 / 316	ABNJOF010000027.1 Salmonella enterica strain PNUSAS365652 SAMN36701889-rid18871833.denovo.27, whole genome shotgun sequence	7443..7764	enterobacteriales	IncX1	98.94	377 / 377	ABNJOF010000028.1 Salmonella enterica strain PNUSAS365652 SAMN36701889-rid18871833.denovo.28, whole genome shotgun sequence	27382..27758																																																avrA	ABNJOF010000002.1	540735..541604	99.885	870	0						
GCA_032369895.1_PDT001827630.1_genomic.fna	Salmonella_enterica	0.5211	443.139 KB	4	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJOG010000001.1 Salmonella enterica strain PNUSAS365852 SAMN36701909-rid18871813.denovo.01, whole genome shotgun sequence	90824..91261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJOG010000032.1 Salmonella enterica strain PNUSAS365852 SAMN36701909-rid18871813.guided.22, whole genome shotgun sequence	6581..7018	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJOG010000020.1 Salmonella enterica strain PNUSAS365852 SAMN36701909-rid18871813.denovo.21, whole genome shotgun sequence	18103..18745	enterobacteriales	IncFII(S)	100	262 / 262	ABNJOG010000020.1 Salmonella enterica strain PNUSAS365852 SAMN36701909-rid18871813.denovo.21, whole genome shotgun sequence	3403..3664																																																avrA	ABNJOG010000002.1	506636..507505	99.54	870	0						
GCA_032369915.1_PDT001827629.1_genomic.fna	Salmonella_enterica	0.5221	269.482 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJOH010000001.1 Salmonella enterica strain PNUSAS365644 SAMN36701850-rid18870893.denovo.01, whole genome shotgun sequence	460178..460615	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJOH010000039.1 Salmonella enterica strain PNUSAS365644 SAMN36701850-rid18870893.guided.29, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJOH010000005.1	149829..150698	99.655	870	0						
GCA_032369935.1_PDT001827627.1_genomic.fna	Salmonella_enterica	0.5205	150.888 KB	12	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_150,thrA_22	464	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_150	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJOI010000018.1 Salmonella enterica strain PNUSAS365642 SAMN36701870-rid18871793.denovo.18, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJOI010000068.1 Salmonella enterica strain PNUSAS365642 SAMN36701870-rid18871793.guided.37, whole genome shotgun sequence	8118..8555	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNJOI010000035.1 Salmonella enterica strain PNUSAS365642 SAMN36701870-rid18871793.denovo.36, whole genome shotgun sequence	11388..12030	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNJOI010000023.1 Salmonella enterica strain PNUSAS365642 SAMN36701870-rid18871793.denovo.23, whole genome shotgun sequence	69899..70040																																																											
GCA_032369975.1_PDT001827612.1_genomic.fna	Salmonella_enterica	0.5222	608.178 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,sul1,sul1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJOL010000001.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.denovo.01, whole genome shotgun sequence	638994..639431	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJOL010000014.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.denovo.14, whole genome shotgun sequence	4165..4944	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNJOL010000027.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.guided.20, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJOL010000029.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.guided.25, whole genome shotgun sequence	2190..2969	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNJOL010000014.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.denovo.14, whole genome shotgun sequence	3169..4035	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNJOL010000029.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.guided.25, whole genome shotgun sequence	1194..2060	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNJOL010000014.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.denovo.14, whole genome shotgun sequence	11599..12504	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNJOL010000031.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.guided.28, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNJOL010000020.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.denovo.24, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJOL010000028.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.guided.23, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNJOL010000014.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.denovo.14, whole genome shotgun sequence	2253..2909	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNJOL010000029.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.guided.25, whole genome shotgun sequence	278..934	Ciprofloxacin	AY070235	sul1	100	840/840	ABNJOL010000014.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.denovo.14, whole genome shotgun sequence	5449..6288	Sulfamethoxazole	U12338	sul1	100	737/828	ABNJOL010000033.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.guided.30, whole genome shotgun sequence	453..1189	Sulfamethoxazole	AY522923	sul1	100	737/840	ABNJOL010000033.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.guided.30, whole genome shotgun sequence	453..1189	Sulfamethoxazole	AY115475	sul1	100	737/882	ABNJOL010000033.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.guided.30, whole genome shotgun sequence	453..1189	Sulfamethoxazole	DQ914960	sul1	100	737/840	ABNJOL010000033.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.guided.30, whole genome shotgun sequence	453..1189	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJOL010000034.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.guided.31, whole genome shotgun sequence	49..888	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNJOL010000019.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.denovo.22, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJOL010000030.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.guided.27, whole genome shotgun sequence	999..2273	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNJOL010000019.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.denovo.22, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNJOL010000032.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.guided.29, whole genome shotgun sequence	200..673	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNJOL010000014.1 Salmonella enterica strain PNUSAS365627 SAMN36701865-rid18871653.denovo.14, whole genome shotgun sequence	17829..18079																																																						avrA	ABNJOL010000002.1	553468..554337	99.77	870	0						
GCA_032369985.1_PDT001827609.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJOM010000001.1 Salmonella enterica strain PNUSAS365639 SAMN36701856-rid18870873.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJOM010000025.1 Salmonella enterica strain PNUSAS365639 SAMN36701856-rid18870873.guided.15, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJOM010000019.1 Salmonella enterica strain PNUSAS365639 SAMN36701856-rid18870873.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNJOM010000020.1 Salmonella enterica strain PNUSAS365639 SAMN36701856-rid18870873.denovo.23, whole genome shotgun sequence	3402..3663																																																avrA	ABNJOM010000002.1	553636..554505	99.54	870	0						
GCA_032370015.1_PDT001827615.1_genomic.fna	Salmonella_enterica	0.5217	390.06 KB	5	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNJOJ010000001.1 Salmonella enterica strain PNUSAS365632 SAMN36701877-rid18871683.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNJOJ010000043.1 Salmonella enterica strain PNUSAS365632 SAMN36701877-rid18871683.guided.24, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJOJ010000002.1	523246..524115	99.195	870	0						
GCA_032370035.1_PDT001827605.1_genomic.fna	Salmonella_enterica	0.5211	347.76 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJON010000001.1 Salmonella enterica strain PNUSAS365625 SAMN36701862-rid18871593.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJON010000027.1 Salmonella enterica strain PNUSAS365625 SAMN36701862-rid18871593.guided.18, whole genome shotgun sequence	15920..16357	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJON010000002.1	145182..146051	99.31	870	0						
GCA_032370055.1_PDT001827603.1_genomic.fna	Salmonella_enterica	0.5225	704.615 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJOO010000001.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.denovo.01, whole genome shotgun sequence	172378..172815	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJOO010000023.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.denovo.27, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNJOO010000042.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.guided.22, whole genome shotgun sequence	5186..5623	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJOO010000044.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.guided.26, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNJOO010000023.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.denovo.27, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNJOO010000044.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.guided.26, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNJOO010000021.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.denovo.23, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNJOO010000046.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.guided.32, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNJOO010000026.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.denovo.30, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJOO010000047.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.guided.33, whole genome shotgun sequence	1073..2286	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNJOO010000023.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.denovo.27, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNJOO010000044.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.guided.26, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNJOO010000017.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.denovo.18, whole genome shotgun sequence	13347..14186	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJOO010000048.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.guided.35, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNJOO010000017.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.denovo.18, whole genome shotgun sequence	9397..10671	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJOO010000045.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.guided.31, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNJOO010000017.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.denovo.18, whole genome shotgun sequence	11829..12302	Trimethoprim	X00926	dfrA1	100	474/474	ABNJOO010000045.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.guided.31, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNJOO010000018.1 Salmonella enterica strain PNUSAS364985 SAMN36701824-rid18871573.denovo.19, whole genome shotgun sequence	8419..8669																																																						avrA	ABNJOO010000002.1	553468..554337	99.77	870	0						
GCA_032370075.1_PDT001827599.1_genomic.fna	Salmonella_enterica	0.5212	225.554 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJOQ010000004.1 Salmonella enterica strain PNUSAS364980 SAMN36701818-rid18870863.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJOQ010000063.1 Salmonella enterica strain PNUSAS364980 SAMN36701818-rid18870863.guided.44, whole genome shotgun sequence	1422..1859	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJOQ010000005.1	98459..99327	100	869	0						
GCA_032370095.1_PDT001827600.1_genomic.fna	Salmonella_enterica	0.522	402.132 KB	4	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNJOP010000001.1 Salmonella enterica strain PNUSAS365630 SAMN36701887-rid18871543.denovo.01, whole genome shotgun sequence	755560..755997	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNJOP010000031.1 Salmonella enterica strain PNUSAS365630 SAMN36701887-rid18871543.guided.23, whole genome shotgun sequence	11275..11712	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJOP010000016.1 Salmonella enterica strain PNUSAS365630 SAMN36701887-rid18871543.denovo.16, whole genome shotgun sequence	6073..6606																																																						avrA	ABNJOP010000002.1	406099..406968	99.54	870	0						
GCA_032370135.1_PDT001827592.1_genomic.fna	Salmonella_enterica	0.5208	695.775 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJOR010000001.1 Salmonella enterica strain PNUSAS365634 SAMN36701871-rid18871473.denovo.01, whole genome shotgun sequence	642138..642575	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJOR010000017.1 Salmonella enterica strain PNUSAS365634 SAMN36701871-rid18871473.guided.12, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032370155.1_PDT001827589.1_genomic.fna	Salmonella_enterica	0.5214	406.161 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJOT010000001.1 Salmonella enterica strain PNUSAS365646 SAMN36701875-rid18871443.denovo.01, whole genome shotgun sequence	774531..774968	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJOT010000027.1 Salmonella enterica strain PNUSAS365646 SAMN36701875-rid18871443.guided.20, whole genome shotgun sequence	8818..9255	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJOT010000017.1 Salmonella enterica strain PNUSAS365646 SAMN36701875-rid18871443.denovo.18, whole genome shotgun sequence	6833..7475	enterobacteriales	IncFII(S)	100	262 / 262	ABNJOT010000019.1 Salmonella enterica strain PNUSAS365646 SAMN36701875-rid18871443.denovo.22, whole genome shotgun sequence	3316..3577																																																avrA	ABNJOT010000002.1	553572..554441	99.54	870	0						
GCA_032370175.1_PDT001827585.1_genomic.fna	Salmonella_enterica	0.5202	279.074 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJOU010000001.1 Salmonella enterica strain PNUSAS365647 SAMN36701876-rid18871403.denovo.01, whole genome shotgun sequence	458968..459405	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJOU010000038.1 Salmonella enterica strain PNUSAS365647 SAMN36701876-rid18871403.denovo.42, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJOU010000038.1 Salmonella enterica strain PNUSAS365647 SAMN36701876-rid18871403.denovo.42, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNJOU010000048.1 Salmonella enterica strain PNUSAS365647 SAMN36701876-rid18871403.guided.30, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJOU010000052.1 Salmonella enterica strain PNUSAS365647 SAMN36701876-rid18871403.guided.45, whole genome shotgun sequence	1733..2569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJOU010000052.1 Salmonella enterica strain PNUSAS365647 SAMN36701876-rid18871403.guided.45, whole genome shotgun sequence	930..1733	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNJOU010000041.1 Salmonella enterica strain PNUSAS365647 SAMN36701876-rid18871403.denovo.47, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNJOU010000053.1 Salmonella enterica strain PNUSAS365647 SAMN36701876-rid18871403.guided.46, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNJOU010000038.1 Salmonella enterica strain PNUSAS365647 SAMN36701876-rid18871403.denovo.42, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNJOU010000052.1 Salmonella enterica strain PNUSAS365647 SAMN36701876-rid18871403.guided.45, whole genome shotgun sequence	54..869	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNJOU010000033.1 Salmonella enterica strain PNUSAS365647 SAMN36701876-rid18871403.denovo.36, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJOU010000051.1 Salmonella enterica strain PNUSAS365647 SAMN36701876-rid18871403.guided.37, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncY	99.74	765 / 765	ABNJOU010000017.1 Salmonella enterica strain PNUSAS365647 SAMN36701876-rid18871403.denovo.17, whole genome shotgun sequence	38912..39676																																																						avrA	ABNJOU010000002.1	573787..574656	99.885	870	0						
GCA_032370195.1_PDT001827580.1_genomic.fna	Salmonella_enterica	0.5211	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJOX010000001.1 Salmonella enterica strain PNUSAS365638 SAMN36701888-rid18871353.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJOX010000025.1 Salmonella enterica strain PNUSAS365638 SAMN36701888-rid18871353.guided.14, whole genome shotgun sequence	41331..41768	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJOX010000017.1 Salmonella enterica strain PNUSAS365638 SAMN36701888-rid18871353.denovo.19, whole genome shotgun sequence	5513..6155	enterobacteriales	IncFII(S)	100	262 / 262	ABNJOX010000018.1 Salmonella enterica strain PNUSAS365638 SAMN36701888-rid18871353.denovo.21, whole genome shotgun sequence	3402..3663																																																avrA	ABNJOX010000002.1	553643..554512	99.54	870	0						
GCA_032370215.1_PDT001827583.1_genomic.fna	Salmonella_enterica	0.5203	255.31 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJOV010000001.1 Salmonella enterica strain PNUSAS365650 SAMN36701861-rid18871383.denovo.01, whole genome shotgun sequence	482238..482675	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJOV010000039.1 Salmonella enterica strain PNUSAS365650 SAMN36701861-rid18871383.guided.25, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABNJOV010000021.1 Salmonella enterica strain PNUSAS365650 SAMN36701861-rid18871383.denovo.21, whole genome shotgun sequence	28403..28724																																																						avrA	ABNJOV010000005.1	145172..146041	99.31	870	0						
GCA_032370275.1_PDT001827576.1_genomic.fna	Salmonella_enterica	0.5197	88.378 KB	17	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJOY010000042.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309788 SAMN36701801-rid18871313.denovo.042, whole genome shotgun sequence	15476..15913	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJOY010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309788 SAMN36701801-rid18871313.denovo.053, whole genome shotgun sequence	2754..3590	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNJOY010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309788 SAMN36701801-rid18871313.denovo.053, whole genome shotgun sequence	1952..2754	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNJOY010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309788 SAMN36701801-rid18871313.denovo.053, whole genome shotgun sequence	1951..2754	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNJOY010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309788 SAMN36701801-rid18871313.denovo.053, whole genome shotgun sequence	1951..2754	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNJOY010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309788 SAMN36701801-rid18871313.denovo.053, whole genome shotgun sequence	1951..2754	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNJOY010000152.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309788 SAMN36701801-rid18871313.guided.075, whole genome shotgun sequence	881..1717	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNJOY010000152.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309788 SAMN36701801-rid18871313.guided.075, whole genome shotgun sequence	79..881	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNJOY010000152.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309788 SAMN36701801-rid18871313.guided.075, whole genome shotgun sequence	78..881	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNJOY010000152.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309788 SAMN36701801-rid18871313.guided.075, whole genome shotgun sequence	78..881	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNJOY010000152.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309788 SAMN36701801-rid18871313.guided.075, whole genome shotgun sequence	78..881	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNJOY010000153.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309788 SAMN36701801-rid18871313.guided.079, whole genome shotgun sequence	7399..7836	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNJOY010000072.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309788 SAMN36701801-rid18871313.denovo.073, whole genome shotgun sequence	10178..10504	enterobacteriales	IncHI2A	99.37	630 / 630	ABNJOY010000091.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309788 SAMN36701801-rid18871313.denovo.095, whole genome shotgun sequence	1537..2166		enterobacteriales	IncX1	100	373 / 373	ABNJOY010000076.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309788 SAMN36701801-rid18871313.denovo.078, whole genome shotgun sequence	2153..2525																																									avrA	ABNJOY010000017.1	81687..82556	99.655	870	0						
GCA_032370315.1_PDT001827572.1_genomic.fna	Salmonella_enterica	0.5221	209.191 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJPB010000001.1 Salmonella enterica strain PNUSAS364983 SAMN36701830-rid18871283.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJPB010000043.1 Salmonella enterica strain PNUSAS364983 SAMN36701830-rid18871283.guided.32, whole genome shotgun sequence	2275..2712	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJPB010000006.1	98459..99327	99.77	870	0						
GCA_032370335.1_PDT001827569.1_genomic.fna	Salmonella_enterica	0.5206	442.07 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJPC010000001.1 Salmonella enterica strain PNUSAS365635 SAMN36701848-rid18871253.denovo.01, whole genome shotgun sequence	519769..520206	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNJPC010000024.1 Salmonella enterica strain PNUSAS365635 SAMN36701848-rid18871253.guided.18, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJPC010000002.1	556191..557059	99.425	870	0						
GCA_032370355.1_PDT001827567.1_genomic.fna	Salmonella_enterica	0.5208	215.576 KB	8	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJPD010000001.1 Salmonella enterica strain PNUSAS364977 SAMN36701831-rid18871233.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJPD010000059.1 Salmonella enterica strain PNUSAS364977 SAMN36701831-rid18871233.guided.40, whole genome shotgun sequence	1478..1915	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJPD010000022.1 Salmonella enterica strain PNUSAS364977 SAMN36701831-rid18871233.denovo.22, whole genome shotgun sequence	2550..3083																																																						avrA	ABNJPD010000006.1	218413..219282	99.425	870	0						
GCA_032370375.1_PDT001827565.1_genomic.fna	Salmonella_enterica	0.5225	723.696 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJPE010000001.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.denovo.01, whole genome shotgun sequence	615289..615726	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJPE010000025.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.denovo.27, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABNJPE010000051.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.guided.42, whole genome shotgun sequence	93..872	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNJPE010000025.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.denovo.27, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNJPE010000044.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.guided.31, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNJPE010000021.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.denovo.22, whole genome shotgun sequence	10066..10971	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNJPE010000049.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.guided.38, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNJPE010000028.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.denovo.30, whole genome shotgun sequence	614..1827	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNJPE010000045.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.guided.32, whole genome shotgun sequence	2011..3224	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJPE010000046.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.guided.33, whole genome shotgun sequence	2011..3224	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNJPE010000025.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.denovo.27, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNJPE010000044.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.guided.31, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNJPE010000021.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.denovo.22, whole genome shotgun sequence	3916..4755	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJPE010000050.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.guided.39, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1240/1275	ABNJPE010000021.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.denovo.22, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJPE010000047.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.guided.34, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNJPE010000021.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.denovo.22, whole genome shotgun sequence	2398..2871	Trimethoprim	X00926	dfrA1	100	474/474	ABNJPE010000047.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.guided.34, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNJPE010000019.1 Salmonella enterica strain PNUSAS364984 SAMN36701819-rid18871213.denovo.20, whole genome shotgun sequence	8321..8571																																																						avrA	ABNJPE010000002.1	553468..554337	99.77	870	0						
GCA_032370415.1_PDT001827563.1_genomic.fna	Salmonella_enterica	0.5206	208.73 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJPF010000002.1 Salmonella enterica strain PNUSAS364991 SAMN36701820-rid18871203.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJPF010000062.1 Salmonella enterica strain PNUSAS364991 SAMN36701820-rid18871203.guided.20, whole genome shotgun sequence	20567..21004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJPF010000006.1	98458..99326	100	869	0						
GCA_032370435.1_PDT001827561.1_genomic.fna	Salmonella_enterica	0.5225	114.757 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJPH010000002.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.denovo.02, whole genome shotgun sequence	187535..187972	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJPH010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.denovo.46, whole genome shotgun sequence	22586..23377	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJPH010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.denovo.46, whole genome shotgun sequence	22586..23377	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNJPH010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.denovo.62, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNJPH010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.denovo.62, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNJPH010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.guided.55, whole genome shotgun sequence	7368..7805	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJPH010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.guided.64, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJPH010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.guided.64, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNJPH010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.guided.70, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNJPH010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.guided.70, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNJPH010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.denovo.75, whole genome shotgun sequence	1468..2681	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNJPH010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.guided.76, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJPH010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.guided.77, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNJPH010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.denovo.46, whole genome shotgun sequence	21242..22081	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJPH010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.guided.64, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNJPH010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.denovo.46, whole genome shotgun sequence	7526..8725	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJPH010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.guided.58, whole genome shotgun sequence	6747..7946	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNJPH010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309787 SAMN36701813-rid18871183.denovo.49, whole genome shotgun sequence	14637..15196																																																						avrA	ABNJPH010000018.1	81701..82570	99.655	870	0						
GCA_032370455.1_PDT001827557.1_genomic.fna	Salmonella_enterica	0.5225	243.442 KB	7	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNJPI010000002.1 Salmonella enterica strain PNUSAS364982 SAMN36701832-rid18871143.denovo.02, whole genome shotgun sequence	293540..293977	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNJPI010000056.1 Salmonella enterica strain PNUSAS364982 SAMN36701832-rid18871143.guided.39, whole genome shotgun sequence	941..1378	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNJPI010000031.1 Salmonella enterica strain PNUSAS364982 SAMN36701832-rid18871143.denovo.33, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNJPI010000035.1 Salmonella enterica strain PNUSAS364982 SAMN36701832-rid18871143.denovo.37, whole genome shotgun sequence	2528..2639																																																avrA	ABNJPI010000006.1	94166..95034	99.425	870	0						
GCA_032370475.1_PDT001827556.1_genomic.fna	Salmonella_enterica	0.5212	477.515 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJPJ010000001.1 Salmonella enterica strain PNUSAS364989 SAMN36701828-rid18871133.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJPJ010000033.1 Salmonella enterica strain PNUSAS364989 SAMN36701828-rid18871133.guided.16, whole genome shotgun sequence	3148..3585	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJPJ010000016.1 Salmonella enterica strain PNUSAS364989 SAMN36701828-rid18871133.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNJPJ010000021.1 Salmonella enterica strain PNUSAS364989 SAMN36701828-rid18871133.denovo.24, whole genome shotgun sequence	3402..3663																																																avrA	ABNJPJ010000002.1	553635..554504	99.54	870	0						
GCA_032370515.1_PDT001827552.1_genomic.fna	Salmonella_enterica	0.5221	93.596 KB	17	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJPN010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309778 SAMN36701763-rid18870823.denovo.001, whole genome shotgun sequence	20159..20596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJPN010000110.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309778 SAMN36701763-rid18870823.guided.056, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJPN010000090.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309778 SAMN36701763-rid18870823.denovo.093, whole genome shotgun sequence	1003..1645																																																						avrA	ABNJPN010000003.1	98972..99841	99.54	870	0						
GCA_032370595.1_PDT001827548.1_genomic.fna	Salmonella_enterica	0.5227	79.264 KB	19	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJPP010000024.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309777 SAMN36701762-rid18871073.denovo.024, whole genome shotgun sequence	11313..11750	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJPP010000089.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309777 SAMN36701762-rid18871073.denovo.093, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNJPP010000089.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309777 SAMN36701762-rid18871073.denovo.093, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNJPP010000089.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309777 SAMN36701762-rid18871073.denovo.093, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNJPP010000089.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309777 SAMN36701762-rid18871073.denovo.093, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNJPP010000089.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309777 SAMN36701762-rid18871073.denovo.093, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNJPP010000118.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309777 SAMN36701762-rid18871073.guided.057, whole genome shotgun sequence	14650..15087	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJPP010000121.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309777 SAMN36701762-rid18871073.guided.092, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNJPP010000121.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309777 SAMN36701762-rid18871073.guided.092, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNJPP010000121.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309777 SAMN36701762-rid18871073.guided.092, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNJPP010000121.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309777 SAMN36701762-rid18871073.guided.092, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNJPP010000121.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309777 SAMN36701762-rid18871073.guided.092, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNJPP010000090.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309777 SAMN36701762-rid18871073.denovo.095, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJPP010000122.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309777 SAMN36701762-rid18871073.guided.094, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJPP010000099.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309777 SAMN36701762-rid18871073.denovo.104, whole genome shotgun sequence	92..233																																																						avrA	ABNJPP010000009.1	81342..82211	99.655	870	0						
GCA_032370635.1_PDT001827544.1_genomic.fna	Salmonella_enterica	0.5188	78.213 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	1	parC_p.T57S	4	IncHI2,IncHI2A,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJPQ010000015.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309823 SAMN36701771-rid18870813.denovo.015, whole genome shotgun sequence	80624..81061	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJPQ010000175.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309823 SAMN36701771-rid18870813.guided.089, whole genome shotgun sequence	7690..8127	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNJPQ010000086.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309823 SAMN36701771-rid18870813.denovo.087, whole genome shotgun sequence	4784..5929	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNJPQ010000177.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309823 SAMN36701771-rid18870813.guided.098, whole genome shotgun sequence	765..1910	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNJPQ010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309823 SAMN36701771-rid18870813.denovo.070, whole genome shotgun sequence	10220..10546	enterobacteriales	IncHI2A	99.52	630 / 630	ABNJPQ010000104.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309823 SAMN36701771-rid18870813.denovo.108, whole genome shotgun sequence	1570..2199		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJPQ010000086.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309823 SAMN36701771-rid18870813.denovo.087, whole genome shotgun sequence	245..386		enterobacteriales	IncX1	100	373 / 373	ABNJPQ010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309823 SAMN36701771-rid18870813.denovo.071, whole genome shotgun sequence	2218..2590																																		avrA	ABNJPQ010000007.1	102634..103503	99.655	870	0						
GCA_032371135.1_PDT001826534.1_genomic.fna	Salmonella_enterica	0.522	337.594 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJQC010000001.1 Salmonella enterica strain PNUSAS365844 SAMN36697762-rid18859643.denovo.01, whole genome shotgun sequence	772111..772548	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJQC010000039.1 Salmonella enterica strain PNUSAS365844 SAMN36697762-rid18859643.guided.31, whole genome shotgun sequence	909..1346	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJQC010000003.1	153272..154141	99.195	870	0						
GCA_032371175.1_PDT001826532.1_genomic.fna	Salmonella_enterica	0.5199	559.957 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJQE010000001.1 Salmonella enterica strain PNUSAS365846 SAMN36697763-rid18859623.denovo.01, whole genome shotgun sequence	343544..343981	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNJQE010000026.1 Salmonella enterica strain PNUSAS365846 SAMN36697763-rid18859623.guided.19, whole genome shotgun sequence	2168..2605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJQE010000002.1	556062..556930	99.425	870	0						
GCA_032371195.1_PDT001826530.1_genomic.fna	Salmonella_enterica	0.5204	651.303 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJQF010000001.1 Salmonella enterica strain PNUSAS365840 SAMN36697758-rid18859603.denovo.01, whole genome shotgun sequence	856719..857156	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNJQF010000028.1 Salmonella enterica strain PNUSAS365840 SAMN36697758-rid18859603.guided.25, whole genome shotgun sequence	19..456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJQF010000003.1	556075..556943	99.425	870	0						
GCA_032371215.1_PDT001826531.1_genomic.fna	Salmonella_enterica	0.5226	269.482 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJQG010000001.1 Salmonella enterica strain PNUSAS365837 SAMN36697755-rid18859613.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJQG010000030.1 Salmonella enterica strain PNUSAS365837 SAMN36697755-rid18859613.guided.16, whole genome shotgun sequence	40144..40581	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJQG010000002.1	149828..150697	99.655	870	0						
GCA_032371235.1_PDT001826528.1_genomic.fna	Salmonella_enterica	0.5214	386.109 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJQH010000001.1 Salmonella enterica strain PNUSAS365847 SAMN36697765-rid18859583.denovo.01, whole genome shotgun sequence	512754..513191	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJQH010000040.1 Salmonella enterica strain PNUSAS365847 SAMN36697765-rid18859583.guided.18, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJQH010000011.1	140203..141071	99.195	870	0						
GCA_032371255.1_PDT001826527.1_genomic.fna	Salmonella_enterica	0.521	489.886 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJQJ010000001.1 Salmonella enterica strain PNUSAS365842 SAMN36697760-rid18859573.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJQJ010000026.1 Salmonella enterica strain PNUSAS365842 SAMN36697760-rid18859573.guided.17, whole genome shotgun sequence	3953..4390	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNJQJ010000017.1 Salmonella enterica strain PNUSAS365842 SAMN36697760-rid18859573.denovo.19, whole genome shotgun sequence	6847..7489	enterobacteriales	IncFII(S)	100	262 / 262	ABNJQJ010000018.1 Salmonella enterica strain PNUSAS365842 SAMN36697760-rid18859573.denovo.21, whole genome shotgun sequence	3423..3684																																																avrA	ABNJQJ010000002.1	553499..554368	99.54	870	0						
GCA_032371275.1_PDT001826524.1_genomic.fna	Salmonella_enterica	0.521	385.705 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJQI010000001.1 Salmonella enterica strain PNUSAS365848 SAMN36697764-rid18859543.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJQI010000042.1 Salmonella enterica strain PNUSAS365848 SAMN36697764-rid18859543.guided.15, whole genome shotgun sequence	1505..1942	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJQI010000002.1	504310..505180	99.196	871	0						
GCA_032371295.1_PDT001826522.1_genomic.fna	Salmonella_enterica	0.5208	412.066 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJQL010000001.1 Salmonella enterica strain PNUSAS365836 SAMN36697754-rid18859523.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJQL010000041.1 Salmonella enterica strain PNUSAS365836 SAMN36697754-rid18859523.guided.14, whole genome shotgun sequence	41953..42390	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJQL010000002.1	504322..505192	99.196	871	0						
GCA_032371315.1_PDT001826519.1_genomic.fna	Salmonella_enterica	0.521	191.007 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJQK010000002.1 Salmonella enterica strain PNUSAS365835 SAMN36697753-rid18859493.denovo.02, whole genome shotgun sequence	151395..151832	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJQK010000057.1 Salmonella enterica strain PNUSAS365835 SAMN36697753-rid18859493.guided.36, whole genome shotgun sequence	16439..16876	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNJQK010000033.1 Salmonella enterica strain PNUSAS365835 SAMN36697753-rid18859493.denovo.33, whole genome shotgun sequence	14189..14831																																																																	
GCA_032371335.1_PDT001826518.1_genomic.fna	Salmonella_enterica	0.5212	406.453 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJQO010000001.1 Salmonella enterica strain PNUSAS365833 SAMN36697751-rid18859483.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJQO010000026.1 Salmonella enterica strain PNUSAS365833 SAMN36697751-rid18859483.guided.15, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJQO010000013.1 Salmonella enterica strain PNUSAS365833 SAMN36697751-rid18859483.denovo.13, whole genome shotgun sequence	40531..41173	enterobacteriales	IncFII(S)	100	262 / 262	ABNJQO010000018.1 Salmonella enterica strain PNUSAS365833 SAMN36697751-rid18859483.denovo.21, whole genome shotgun sequence	3425..3686																																																avrA	ABNJQO010000002.1	553547..554416	99.54	870	0						
GCA_032371355.1_PDT001826520.1_genomic.fna	Salmonella_enterica	0.5207	477.306 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJQM010000001.1 Salmonella enterica strain PNUSAS365841 SAMN36697759-rid18859503.denovo.01, whole genome shotgun sequence	477371..477808	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJQM010000033.1 Salmonella enterica strain PNUSAS365841 SAMN36697759-rid18859503.guided.16, whole genome shotgun sequence	38261..38698	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABNJQM010000015.1 Salmonella enterica strain PNUSAS365841 SAMN36697759-rid18859503.denovo.15, whole genome shotgun sequence	27694..28015																																																						avrA	ABNJQM010000009.1	140203..141071	99.195	870	0						
GCA_032371375.1_PDT001826517.1_genomic.fna	Salmonella_enterica	0.5212	390.074 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNJQR010000001.1 Salmonella enterica strain 23IA06GB03-S1 SAMN36677153-rid18859473.denovo.01, whole genome shotgun sequence	778959..779396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNJQR010000038.1 Salmonella enterica strain 23IA06GB03-S1 SAMN36677153-rid18859473.guided.20, whole genome shotgun sequence	15470..15907	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNJQR010000026.1 Salmonella enterica strain 23IA06GB03-S1 SAMN36677153-rid18859473.denovo.29, whole genome shotgun sequence	239..369																																																						avrA	ABNJQR010000002.1	560841..561710	99.425	870	0						
GCA_032371395.1_PDT001826515.1_genomic.fna	Salmonella_enterica	0.5217	391.1 KB	4	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJQN010000001.1 Salmonella enterica strain PNUSAS365832 SAMN36697750-rid18859453.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJQN010000034.1 Salmonella enterica strain PNUSAS365832 SAMN36697750-rid18859453.guided.20, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJQN010000003.1	120799..121668	99.31	870	0						
GCA_032371415.1_PDT001826510.1_genomic.fna	Salmonella_enterica	0.5213	489.854 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJQP010000001.1 Salmonella enterica strain PNUSAS365742 SAMN36697732-rid18859403.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJQP010000024.1 Salmonella enterica strain PNUSAS365742 SAMN36697732-rid18859403.guided.16, whole genome shotgun sequence	11960..12397	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJQP010000013.1 Salmonella enterica strain PNUSAS365742 SAMN36697732-rid18859403.denovo.13, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNJQP010000013.1 Salmonella enterica strain PNUSAS365742 SAMN36697732-rid18859403.denovo.13, whole genome shotgun sequence	4416..4677																																																avrA	ABNJQP010000002.1	553181..554050	99.54	870	0						
GCA_032371435.1_PDT001826502.1_genomic.fna	Salmonella_enterica	0.5211	489.863 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJQQ010000001.1 Salmonella enterica strain PNUSAS365737 SAMN36697719-rid18859323.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJQQ010000021.1 Salmonella enterica strain PNUSAS365737 SAMN36697719-rid18859323.guided.15, whole genome shotgun sequence	22075..22512	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJQQ010000012.1 Salmonella enterica strain PNUSAS365737 SAMN36697719-rid18859323.denovo.12, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNJQQ010000012.1 Salmonella enterica strain PNUSAS365737 SAMN36697719-rid18859323.denovo.12, whole genome shotgun sequence	53083..53344																																																avrA	ABNJQQ010000002.1	553560..554429	99.54	870	0						
GCA_032371455.1_PDT001826501.1_genomic.fna	Salmonella_enterica	0.5203	727.316 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCRY)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNJQS010000001.1 Salmonella enterica strain PNUSAS365738 SAMN36697722-rid18859313.denovo.01, whole genome shotgun sequence	492195..492632	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNJQS010000020.1 Salmonella enterica strain PNUSAS365738 SAMN36697722-rid18859313.guided.14, whole genome shotgun sequence	24630..25067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	96.45	591 / 593	ABNJQS010000014.1 Salmonella enterica strain PNUSAS365738 SAMN36697722-rid18859313.denovo.16, whole genome shotgun sequence	18545..19135																																																						avrA	ABNJQS010000004.1	133513..134382	99.54	870	0						
GCA_032371475.1_PDT001826500.1_genomic.fna	Salmonella_enterica	0.5221	762.445 KB	2	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJQT010000001.1 Salmonella enterica strain PNUSAS365745 SAMN36697721-rid18859303.denovo.01, whole genome shotgun sequence	1369376..1369813	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJQT010000018.1 Salmonella enterica strain PNUSAS365745 SAMN36697721-rid18859303.guided.11, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJQT010000003.1	553695..554564	99.655	870	0						
GCA_032371495.1_PDT001826496.1_genomic.fna	Salmonella_enterica	0.5207	478.749 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJQX010000001.1 Salmonella enterica strain PNUSAS365743 SAMN36697718-rid18859263.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJQX010000025.1 Salmonella enterica strain PNUSAS365743 SAMN36697718-rid18859263.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJQX010000013.1 Salmonella enterica strain PNUSAS365743 SAMN36697718-rid18859263.denovo.15, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNJQX010000017.1 Salmonella enterica strain PNUSAS365743 SAMN36697718-rid18859263.denovo.20, whole genome shotgun sequence	3422..3683																																																avrA	ABNJQX010000002.1	585342..586211	99.54	870	0						
GCA_032371515.1_PDT001826499.1_genomic.fna	Salmonella_enterica	0.5216	341.379 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJQU010000004.1 Salmonella enterica strain PNUSAS365740 SAMN36697720-rid18859293.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJQU010000039.1 Salmonella enterica strain PNUSAS365740 SAMN36697720-rid18859293.guided.16, whole genome shotgun sequence	26379..26816	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJQU010000015.1 Salmonella enterica strain PNUSAS365740 SAMN36697720-rid18859293.denovo.17, whole genome shotgun sequence	48415..49057	enterobacteriales	IncFII(S)	100	262 / 262	ABNJQU010000015.1 Salmonella enterica strain PNUSAS365740 SAMN36697720-rid18859293.denovo.17, whole genome shotgun sequence	64142..64403																																																avrA	ABNJQU010000001.1	446434..447302	100	869	0						
GCA_032371535.1_PDT001826497.1_genomic.fna	Salmonella_enterica	0.5215	496.516 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJQW010000001.1 Salmonella enterica strain PNUSAS365746 SAMN36697735-rid18859273.denovo.01, whole genome shotgun sequence	283019..283456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJQW010000029.1 Salmonella enterica strain PNUSAS365746 SAMN36697735-rid18859273.guided.12, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNJQW010000019.1 Salmonella enterica strain PNUSAS365746 SAMN36697735-rid18859273.denovo.22, whole genome shotgun sequence	547..675																																																						avrA	ABNJQW010000002.1	147026..147895	98.966	870	0						
GCA_032371555.1_PDT001826492.1_genomic.fna	Salmonella_enterica	0.522	729.931 KB	2	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJQY010000001.1 Salmonella enterica strain PNUSAS365732 SAMN36697724-rid18859223.denovo.01, whole genome shotgun sequence	1365578..1366015	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJQY010000017.1 Salmonella enterica strain PNUSAS365732 SAMN36697724-rid18859223.guided.13, whole genome shotgun sequence	3455..3892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJQY010000003.1	149620..150489	99.77	870	0						
GCA_032371575.1_PDT001826494.1_genomic.fna	Salmonella_enterica	0.5207	697.187 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	-	Salmonella enterica subspecies enterica (subspecies I)	I 9:l,z28:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJQV010000001.1 Salmonella enterica strain PNUSAS365750 SAMN36697716-rid18859243.denovo.01, whole genome shotgun sequence	498233..498670	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNJQV010000019.1 Salmonella enterica strain PNUSAS365750 SAMN36697716-rid18859243.guided.10, whole genome shotgun sequence	32257..32694	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJQV010000004.1	146831..147699	99.31	870	0						
GCA_032371595.1_PDT001826487.1_genomic.fna	Salmonella_enterica	0.522	429.852 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJRB010000001.1 Salmonella enterica strain PNUSAS365739 SAMN36697730-rid18859173.denovo.01, whole genome shotgun sequence	684222..684659	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJRB010000022.1 Salmonella enterica strain PNUSAS365739 SAMN36697730-rid18859173.guided.16, whole genome shotgun sequence	8413..8850	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJRB010000004.1	148520..149389	99.77	870	0						
GCA_032371615.1_PDT001826491.1_genomic.fna	Salmonella_enterica	0.5211	490.039 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87G	3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJRC010000001.1 Salmonella enterica strain PNUSAS365735 SAMN36697731-rid18859213.denovo.01, whole genome shotgun sequence	815093..815530	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJRC010000023.1 Salmonella enterica strain PNUSAS365735 SAMN36697731-rid18859213.guided.16, whole genome shotgun sequence	5765..6202	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNJRC010000016.1 Salmonella enterica strain PNUSAS365735 SAMN36697731-rid18859213.denovo.19, whole genome shotgun sequence	368..498	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJRC010000011.1 Salmonella enterica strain PNUSAS365735 SAMN36697731-rid18859213.denovo.11, whole genome shotgun sequence	48669..49311		enterobacteriales	IncFII(S)	100	262 / 262	ABNJRC010000011.1 Salmonella enterica strain PNUSAS365735 SAMN36697731-rid18859213.denovo.11, whole genome shotgun sequence	4416..4677																																									avrA	ABNJRC010000002.1	552973..553842	99.54	870	0						
GCA_032371625.1_PDT001826489.1_genomic.fna	Salmonella_enterica	0.5228	761.553 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJQZ010000001.1 Salmonella enterica strain PNUSAS365741 SAMN36697717-rid18859193.denovo.01, whole genome shotgun sequence	481590..482027	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJQZ010000018.1 Salmonella enterica strain PNUSAS365741 SAMN36697717-rid18859193.guided.14, whole genome shotgun sequence	2313..2750	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJQZ010000004.1	553876..554745	99.77	870	0						
GCA_032371655.1_PDT001826269.1_genomic.fna	Salmonella_enterica	0.521	448.498 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJRA010000009.1 Salmonella enterica strain PNUSAS365482 SAMN36696265-rid18855723.denovo.09, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJRA010000030.1 Salmonella enterica strain PNUSAS365482 SAMN36696265-rid18855723.guided.19, whole genome shotgun sequence	31448..31885	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJRA010000016.1 Salmonella enterica strain PNUSAS365482 SAMN36696265-rid18855723.denovo.16, whole genome shotgun sequence	34958..35491																																																						avrA	ABNJRA010000003.1	153372..154238	98.966	870	0						
GCA_032371715.1_PDT001826245.1_genomic.fna	Salmonella_enterica	0.5213	822.124 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJRF010000001.1 Salmonella enterica strain PNUSAS365571 SAMN36696318-rid18855623.denovo.01, whole genome shotgun sequence	645015..645452	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJRF010000017.1 Salmonella enterica strain PNUSAS365571 SAMN36696318-rid18855623.guided.08, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJRF010000003.1	562134..563004	99.656	871	0						
GCA_032371775.1_PDT001826010.1_genomic.fna	Salmonella_enterica	0.5219	207.444 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJRG010000001.1 Salmonella enterica strain PNUSAS365196 SAMN36694955-rid18854703.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJRG010000049.1 Salmonella enterica strain PNUSAS365196 SAMN36694955-rid18854703.guided.35, whole genome shotgun sequence	4767..5204	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJRG010000004.1	208950..209818	99.77	870	0						
GCA_032371815.1_PDT001826512.1_genomic.fna	Salmonella_enterica	0.5213	215.934 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJRI010000001.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJRI010000025.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.denovo.26, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJRI010000025.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.denovo.26, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNJRI010000033.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.denovo.39, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNJRI010000033.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.denovo.39, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNJRI010000043.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.denovo.52, whole genome shotgun sequence	93..908	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	aac(6')-Iaa	97.49	438/438	ABNJRI010000052.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.guided.35, whole genome shotgun sequence	3700..4137	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNJRI010000053.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.guided.37, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNJRI010000053.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.guided.37, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(4)-Ia	99.9	1026/1026	ABNJRI010000054.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.guided.38, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNJRI010000054.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.guided.38, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNJRI010000056.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.guided.41, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJRI010000056.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.guided.41, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNJRI010000058.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.guided.53, whole genome shotgun sequence	2..817	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	blaCTX-M-65	100	876/876	ABNJRI010000016.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.denovo.16, whole genome shotgun sequence	83373..84248	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNJRI010000057.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.guided.48, whole genome shotgun sequence	1138..2013	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNJRI010000025.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.denovo.26, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJRI010000056.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.guided.41, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNJRI010000025.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.denovo.26, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJRI010000050.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.guided.28, whole genome shotgun sequence	10775..11974	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNJRI010000032.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.denovo.36, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNJRI010000055.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.guided.40, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNJRI010000028.1 Salmonella enterica strain PNUSAS365748 SAMN36697726-rid18859423.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABNJRI010000002.1	149828..150697	99.655	870	0						
GCA_032371955.1_PDT001826078.1_genomic.fna	Salmonella_enterica	0.5212	225.461 KB	8	aroC_43,dnaN_41,hemD_16,hisD_85,purE_40,sucA_58,thrA_3	1392	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(S),IncFII(Yp)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_3	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJRM010000007.1 Salmonella enterica strain PNUSAS365390 SAMN36695432-rid18855003.denovo.07, whole genome shotgun sequence	179130..179567	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJRM010000071.1 Salmonella enterica strain PNUSAS365390 SAMN36695432-rid18855003.guided.41, whole genome shotgun sequence	4651..5088	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABNJRM010000027.1 Salmonella enterica strain PNUSAS365390 SAMN36695432-rid18855003.denovo.27, whole genome shotgun sequence	9092..9353	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNJRM010000024.1 Salmonella enterica strain PNUSAS365390 SAMN36695432-rid18855003.denovo.24, whole genome shotgun sequence	29355..29581																																																avrA	ABNJRM010000005.1	106623..107492	99.54	870	0						
GCA_032371995.1_PDT001701277.1_genomic.fna	Salmonella_enterica	0.5202	252.196 KB	6	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pKPC-CAV1321	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNJRO010000004.1 Salmonella enterica strain PNUSAS344670 SAMN34365127-rid17759963.denovo.04, whole genome shotgun sequence	374812..375249	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNJRO010000072.1 Salmonella enterica strain PNUSAS344670 SAMN34365127-rid17759963.guided.53, whole genome shotgun sequence	708..1145	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1321	94.61	594 / 596	ABNJRO010000026.1 Salmonella enterica strain PNUSAS344670 SAMN34365127-rid17759963.denovo.27, whole genome shotgun sequence	5092..5685																																																																	
GCA_032372015.1_PDT001701276.1_genomic.fna	Salmonella_enterica	0.5208	433.114 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJRP010000001.1 Salmonella enterica strain PNUSAS344667 SAMN34365125-rid17759473.denovo.01, whole genome shotgun sequence	487457..487894	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJRP010000020.1 Salmonella enterica strain PNUSAS344667 SAMN34365125-rid17759473.guided.13, whole genome shotgun sequence	27419..27856	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJRP010000013.1 Salmonella enterica strain PNUSAS344667 SAMN34365125-rid17759473.denovo.15, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNJRP010000015.1 Salmonella enterica strain PNUSAS344667 SAMN34365125-rid17759473.denovo.18, whole genome shotgun sequence	3395..3656																																																avrA	ABNJRP010000002.1	553366..554235	99.54	870	0						
GCA_032372035.1_PDT001701275.1_genomic.fna	Salmonella_enterica	0.52	464.59 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJRR010000002.1 Salmonella enterica strain PNUSAS344660 SAMN34365114-rid17759463.denovo.02, whole genome shotgun sequence	255071..255508	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNJRR010000044.1 Salmonella enterica strain PNUSAS344660 SAMN34365114-rid17759463.guided.24, whole genome shotgun sequence	12101..12538	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.93	374 / 374	ABNJRR010000018.1 Salmonella enterica strain PNUSAS344660 SAMN34365114-rid17759463.denovo.19, whole genome shotgun sequence	772..1145																																																						avrA	ABNJRR010000003.1	120956..121824	99.425	870	0						
GCA_032372055.1_PDT001701274.1_genomic.fna	Salmonella_enterica	0.5209	564.325 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncR,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJRS010000001.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.denovo.01, whole genome shotgun sequence	172191..172628	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJRS010000022.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.denovo.27, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNJRS010000031.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.guided.14, whole genome shotgun sequence	27664..28101	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJRS010000033.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.guided.26, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNJRS010000022.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.denovo.27, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNJRS010000033.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.guided.26, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNJRS010000020.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.denovo.24, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNJRS010000032.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.guided.23, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNJRS010000019.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.denovo.22, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJRS010000034.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.guided.28, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNJRS010000022.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.denovo.27, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNJRS010000033.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.guided.26, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNJRS010000024.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.denovo.32, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJRS010000036.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.guided.31, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNJRS010000019.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.denovo.22, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJRS010000035.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.guided.29, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNJRS010000019.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.denovo.22, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNJRS010000035.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.guided.29, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNJRS010000016.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.denovo.19, whole genome shotgun sequence	4434..4684	enterobacteriales	IncX1	94.92	374 / 374	ABNJRS010000013.1 Salmonella enterica strain PNUSAS344663 SAMN34365118-rid17759453.denovo.16, whole genome shotgun sequence	13796..14169																																																avrA	ABNJRS010000002.1	583639..584508	99.77	870	0						
GCA_032372075.1_PDT001701267.1_genomic.fna	Salmonella_enterica	0.5225	552.828 KB	3	aroC_99,dnaN_175,hemD_58,hisD_11,purE_111,sucA_9,thrA_2	639	3,10:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_99	dnaN	100	100	dnaN_175	hemD	100	100	hemD_58	hisD	100	100	hisD_11	purE	100	100	purE_111	sucA	100	100	sucA_9	thrA	100	100	thrA_2	3,10	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Orion		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJRQ010000001.1 Salmonella enterica strain PNUSAS344653 SAMN34365109-rid17759943.denovo.01, whole genome shotgun sequence	718395..718832	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJRQ010000023.1 Salmonella enterica strain PNUSAS344653 SAMN34365109-rid17759943.guided.19, whole genome shotgun sequence	1868..2305	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.04	115 / 131	ABNJRQ010000016.1 Salmonella enterica strain PNUSAS344653 SAMN34365109-rid17759943.denovo.18, whole genome shotgun sequence	1100..1214																																																																	
GCA_032372095.1_PDT001701266.1_genomic.fna	Salmonella_enterica	0.5173	300.874 KB	6	aroC_42,dnaN_169,hemD_48,hisD_149,purE_40,sucA_23,thrA_4	2388	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col156,ColpVC,IncX1	aroC	100	100	aroC_42	dnaN	100	100	dnaN_169	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_40	sucA	100	100	sucA_23	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJRT010000002.1 Salmonella enterica strain PNUSAS344669 SAMN34365110-rid17759393.denovo.02, whole genome shotgun sequence	93696..94133	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJRT010000056.1 Salmonella enterica strain PNUSAS344669 SAMN34365110-rid17759393.guided.24, whole genome shotgun sequence	16444..16881	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	96.75	154 / 154	ABNJRT010000031.1 Salmonella enterica strain PNUSAS344669 SAMN34365110-rid17759393.denovo.34, whole genome shotgun sequence	882..1035	enterobacteriales	ColpVC	98.45	193 / 193	ABNJRT010000041.1 Salmonella enterica strain PNUSAS344669 SAMN34365110-rid17759393.denovo.44, whole genome shotgun sequence	283..475		enterobacteriales	IncX1	98.14	377 / 377	ABNJRT010000023.1 Salmonella enterica strain PNUSAS344669 SAMN34365110-rid17759393.denovo.23, whole genome shotgun sequence	769..1145																																									avrA	ABNJRT010000001.1	177623..178491	99.31	870	0						
GCA_032372115.1_PDT001700942.1_genomic.fna	Salmonella_enterica	0.5217	341.897 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJRV010000004.1 Salmonella enterica strain PNUSAS344580 SAMN34361040-rid17757313.denovo.04, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJRV010000048.1 Salmonella enterica strain PNUSAS344580 SAMN34361040-rid17757313.guided.28, whole genome shotgun sequence	8038..8475	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJRV010000014.1 Salmonella enterica strain PNUSAS344580 SAMN34361040-rid17757313.denovo.14, whole genome shotgun sequence	14681..15323	enterobacteriales	IncFII(S)	100	262 / 262	ABNJRV010000014.1 Salmonella enterica strain PNUSAS344580 SAMN34361040-rid17757313.denovo.14, whole genome shotgun sequence	30408..30669		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJRV010000016.1 Salmonella enterica strain PNUSAS344580 SAMN34361040-rid17757313.denovo.16, whole genome shotgun sequence	68651..68792																																									avrA	ABNJRV010000001.1	446565..447433	100	869	0						
GCA_032372135.1_PDT001700941.1_genomic.fna	Salmonella_enterica	0.5217	372.915 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Farmsen or Poona	The predicted serotypes share the same general formula: 13:z:1,6 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJRU010000001.1 Salmonella enterica strain PNUSAS344564 SAMN34361043-rid17755793.denovo.01, whole genome shotgun sequence	642581..643018	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJRU010000027.1 Salmonella enterica strain PNUSAS344564 SAMN34361043-rid17755793.guided.20, whole genome shotgun sequence	6215..6652	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJRU010000008.1	140438..141307	99.425	870	0						
GCA_032372155.1_PDT001700940.1_genomic.fna	Salmonella_enterica	0.5212	490.177 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJRW010000001.1 Salmonella enterica strain PNUSAS344588 SAMN34361044-rid17757303.denovo.01, whole genome shotgun sequence	771414..771851	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJRW010000025.1 Salmonella enterica strain PNUSAS344588 SAMN34361044-rid17757303.guided.18, whole genome shotgun sequence	765..1202	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJRW010000012.1 Salmonella enterica strain PNUSAS344588 SAMN34361044-rid17757303.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNJRW010000012.1 Salmonella enterica strain PNUSAS344588 SAMN34361044-rid17757303.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABNJRW010000002.1	585480..586349	99.54	870	0						
GCA_032372175.1_PDT001700939.1_genomic.fna	Salmonella_enterica	0.521	363.494 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJRX010000003.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.denovo.03, whole genome shotgun sequence	159429..159866	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	837/837	ABNJRX010000019.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.denovo.19, whole genome shotgun sequence	8324..9160	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJRX010000019.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.denovo.19, whole genome shotgun sequence	9160..9963	Streptomycin	AF321551	aph(6)-Id	99.88	837/837	ABNJRX010000034.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.guided.21, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJRX010000034.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.guided.21, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNJRX010000035.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.guided.24, whole genome shotgun sequence	1450..1887	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNJRX010000019.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.denovo.19, whole genome shotgun sequence	39180..40325	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNJRX010000034.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.guided.21, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABNJRX010000019.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.denovo.19, whole genome shotgun sequence	3975..5188	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJRX010000038.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.guided.29, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNJRX010000019.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.denovo.19, whole genome shotgun sequence	10024..10839	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNJRX010000034.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.guided.21, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNJRX010000019.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.denovo.19, whole genome shotgun sequence	5789..7063	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJRX010000034.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.guided.21, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNJRX010000020.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.denovo.20, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNJRX010000016.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.denovo.16, whole genome shotgun sequence	29465..29724		enterobacteriales	IncX1	98.66	374 / 374	ABNJRX010000016.1 Salmonella enterica strain PNUSAS344572 SAMN34361034-rid17757293.denovo.16, whole genome shotgun sequence	65319..65692																																									avrA	ABNJRX010000007.1	171792..172660	99.54	870	0						
GCA_032372195.1_PDT001700938.1_genomic.fna	Salmonella_enterica	0.5214	229.222 KB	7	aroC_216,dnaN_206,hemD_25,hisD_248,purE_223*,sucA_35,thrA_196	763*	9:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_216	dnaN	100	100	dnaN_206	hemD	100	100	hemD_25	hisD	100	100	hisD_248	purE	99.749373433584	100	purE_223*	sucA	100	100	sucA_35	thrA	100	100	thrA_196	9	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Goettingen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJRY010000012.1 Salmonella enterica strain PNUSAS344566 SAMN34361041-rid17755783.denovo.12, whole genome shotgun sequence	94186..94623	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJRY010000044.1 Salmonella enterica strain PNUSAS344566 SAMN34361041-rid17755783.guided.33, whole genome shotgun sequence	111..548	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJRY010000011.1	136586..137455	99.655	870	0						
GCA_032372215.1_PDT001700937.1_genomic.fna	Salmonella_enterica	0.5211	489.618 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJRZ010000001.1 Salmonella enterica strain PNUSAS344570 SAMN34361038-rid17757283.denovo.01, whole genome shotgun sequence	811872..812309	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJRZ010000026.1 Salmonella enterica strain PNUSAS344570 SAMN34361038-rid17757283.guided.16, whole genome shotgun sequence	19233..19670	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJRZ010000013.1 Salmonella enterica strain PNUSAS344570 SAMN34361038-rid17757283.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNJRZ010000016.1 Salmonella enterica strain PNUSAS344570 SAMN34361038-rid17757283.denovo.19, whole genome shotgun sequence	3395..3656																																																avrA	ABNJRZ010000002.1	553372..554241	99.54	870	0						
GCA_032372235.1_PDT001700936.1_genomic.fna	Salmonella_enterica	0.5216	762.582 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJSB010000001.1 Salmonella enterica strain PNUSAS344573 SAMN34361046-rid17755773.denovo.01, whole genome shotgun sequence	481938..482375	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJSB010000024.1 Salmonella enterica strain PNUSAS344573 SAMN34361046-rid17755773.guided.16, whole genome shotgun sequence	5148..5585	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	98.59	142 / 142	ABNJSB010000011.1 Salmonella enterica strain PNUSAS344573 SAMN34361046-rid17755773.denovo.11, whole genome shotgun sequence	66631..66772																																																						avrA	ABNJSB010000004.1	553682..554551	99.655	870	0						
GCA_032372255.1_PDT001700935.1_genomic.fna	Salmonella_enterica	0.5217	261.712 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJSC010000001.1 Salmonella enterica strain PNUSAS344578 SAMN34361037-rid17757273.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJSC010000025.1 Salmonella enterica strain PNUSAS344578 SAMN34361037-rid17757273.denovo.25, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJSC010000025.1 Salmonella enterica strain PNUSAS344578 SAMN34361037-rid17757273.denovo.25, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNJSC010000047.1 Salmonella enterica strain PNUSAS344578 SAMN34361037-rid17757273.guided.32, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJSC010000047.1 Salmonella enterica strain PNUSAS344578 SAMN34361037-rid17757273.guided.32, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNJSC010000050.1 Salmonella enterica strain PNUSAS344578 SAMN34361037-rid17757273.guided.37, whole genome shotgun sequence	817..1254	Amikacin, Tobramycin	NC_003197	blaCTX-M-65	100	876/876	ABNJSC010000038.1 Salmonella enterica strain PNUSAS344578 SAMN34361037-rid17757273.denovo.43, whole genome shotgun sequence	899..1774	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNJSC010000052.1 Salmonella enterica strain PNUSAS344578 SAMN34361037-rid17757273.guided.45, whole genome shotgun sequence	256..1131	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNJSC010000040.1 Salmonella enterica strain PNUSAS344578 SAMN34361037-rid17757273.denovo.47, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	99.76	417/417	ABNJSC010000054.1 Salmonella enterica strain PNUSAS344578 SAMN34361037-rid17757273.guided.51, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	fosA3	100	417/417	ABNJSC010000055.1 Salmonella enterica strain PNUSAS344578 SAMN34361037-rid17757273.guided.52, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABNJSC010000025.1 Salmonella enterica strain PNUSAS344578 SAMN34361037-rid17757273.denovo.25, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJSC010000047.1 Salmonella enterica strain PNUSAS344578 SAMN34361037-rid17757273.guided.32, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNJSC010000025.1 Salmonella enterica strain PNUSAS344578 SAMN34361037-rid17757273.denovo.25, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJSC010000053.1 Salmonella enterica strain PNUSAS344578 SAMN34361037-rid17757273.guided.46, whole genome shotgun sequence	999..2198	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																															gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNJSC010000030.1 Salmonella enterica strain PNUSAS344578 SAMN34361037-rid17757273.denovo.30, whole genome shotgun sequence	9109..9668																																																						avrA	ABNJSC010000004.1	150288..151157	99.655	870	0						
GCA_032372275.1_PDT001700934.1_genomic.fna	Salmonella_enterica	0.5221	528.209 KB	3	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJSA010000001.1 Salmonella enterica strain PNUSAS344567 SAMN34361047-rid17757263.denovo.01, whole genome shotgun sequence	657552..657989	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJSA010000019.1 Salmonella enterica strain PNUSAS344567 SAMN34361047-rid17757263.guided.15, whole genome shotgun sequence	4455..4892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJSA010000002.1	510022..510888	98.966	870	0						
GCA_032372295.1_PDT001700933.1_genomic.fna	Salmonella_enterica	0.5218	355.438 KB	5	aroC_6,dnaN_14,hemD_26,hisD_583,purE_8,sucA_9,thrA_38	2065	17:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_14	hemD	100	100	hemD_26	hisD	100	100	hisD_583	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_38	17	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Michigan		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJSD010000005.1 Salmonella enterica strain PNUSAS344568 SAMN34361048-rid17755763.denovo.05, whole genome shotgun sequence	312388..312825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJSD010000042.1 Salmonella enterica strain PNUSAS344568 SAMN34361048-rid17755763.guided.33, whole genome shotgun sequence	57..494	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJSD010000001.1	178559..179428	99.425	870	0						
GCA_032372315.1_PDT001700931.1_genomic.fna	Salmonella_enterica	0.5226	469.28 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pMET)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNJSF010000001.1 Salmonella enterica strain PNUSAS344575 SAMN34361002-rid17755753.denovo.01, whole genome shotgun sequence	995380..995817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNJSF010000024.1 Salmonella enterica strain PNUSAS344575 SAMN34361002-rid17755753.guided.20, whole genome shotgun sequence	89..526	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pMET)	98.27	577 / 577	ABNJSF010000017.1 Salmonella enterica strain PNUSAS344575 SAMN34361002-rid17755753.denovo.17, whole genome shotgun sequence	28348..28924																																																						avrA	ABNJSF010000003.1	140108..140977	99.54	870	0						
GCA_032372335.1_PDT001700932.1_genomic.fna	Salmonella_enterica	0.5214	472.046 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJSE010000001.1 Salmonella enterica strain PNUSAS344581 SAMN34361006-rid17757253.denovo.01, whole genome shotgun sequence	645014..645451	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJSE010000037.1 Salmonella enterica strain PNUSAS344581 SAMN34361006-rid17757253.guided.23, whole genome shotgun sequence	1057..1494	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJSE010000002.1	658450..659320	99.656	871	0						
GCA_032372355.1_PDT001700930.1_genomic.fna	Salmonella_enterica	0.5207	492.697 KB	4	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	2	Col(pHAD28),IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNJSG010000003.1 Salmonella enterica strain PNUSAS344579 SAMN34361004-rid17757243.denovo.03, whole genome shotgun sequence	145279..145716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNJSG010000032.1 Salmonella enterica strain PNUSAS344579 SAMN34361004-rid17757243.guided.26, whole genome shotgun sequence	3731..4168	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABNJSG010000009.1 Salmonella enterica strain PNUSAS344579 SAMN34361004-rid17757243.denovo.09, whole genome shotgun sequence	166009..166431	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNJSG010000031.1 Salmonella enterica strain PNUSAS344579 SAMN34361004-rid17757243.guided.25, whole genome shotgun sequence	1056..1478	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.15	113 / 131	ABNJSG010000023.1 Salmonella enterica strain PNUSAS344579 SAMN34361004-rid17757243.denovo.27, whole genome shotgun sequence	1409..1521	enterobacteriales	IncX1	98.93	374 / 374	ABNJSG010000017.1 Salmonella enterica strain PNUSAS344579 SAMN34361004-rid17757243.denovo.17, whole genome shotgun sequence	6868..7241																																																avrA	ABNJSG010000002.1	518101..518971	99.426	871	0						
GCA_032372375.1_PDT001700929.1_genomic.fna	Salmonella_enterica	0.5208	368.134 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJSH010000001.1 Salmonella enterica strain PNUSAS344576 SAMN34361007-rid17757233.denovo.01, whole genome shotgun sequence	486113..486550	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJSH010000034.1 Salmonella enterica strain PNUSAS344576 SAMN34361007-rid17757233.guided.25, whole genome shotgun sequence	30..467	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNJSH010000005.1 Salmonella enterica strain PNUSAS344576 SAMN34361007-rid17757233.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNJSH010000036.1 Salmonella enterica strain PNUSAS344576 SAMN34361007-rid17757233.guided.35, whole genome shotgun sequence	24..446	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJSH010000002.1	174402..175271	99.195	870	0						
GCA_032372395.1_PDT001700928.1_genomic.fna	Salmonella_enterica	0.5213	680.269 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJSI010000001.1 Salmonella enterica strain PNUSAS344585 SAMN34361001-rid17755743.denovo.01, whole genome shotgun sequence	510328..510765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNJSI010000026.1 Salmonella enterica strain PNUSAS344585 SAMN34361001-rid17755743.guided.18, whole genome shotgun sequence	2251..2688	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJSI010000004.1	544791..545659	99.425	870	0						
GCA_032372415.1_PDT001700926.1_genomic.fna	Salmonella_enterica	0.5228	397.494 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJSJ010000001.1 Salmonella enterica strain PNUSAS344577 SAMN34360999-rid17755723.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJSJ010000024.1 Salmonella enterica strain PNUSAS344577 SAMN34360999-rid17755723.guided.17, whole genome shotgun sequence	5075..5512	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJSJ010000006.1	183081..183950	98.966	870	0						
GCA_032372435.1_PDT001700927.1_genomic.fna	Salmonella_enterica	0.5215	706.177 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJSK010000001.1 Salmonella enterica strain PNUSAS344587 SAMN34361005-rid17755733.denovo.01, whole genome shotgun sequence	615752..616189	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJSK010000030.1 Salmonella enterica strain PNUSAS344587 SAMN34361005-rid17755733.guided.22, whole genome shotgun sequence	5015..5452	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNJSK010000016.1 Salmonella enterica strain PNUSAS344587 SAMN34361005-rid17755733.denovo.16, whole genome shotgun sequence	11599..12241																																																						avrA	ABNJSK010000002.1	536864..537733	99.77	870	0						
GCA_032372455.1_PDT001700925.1_genomic.fna	Salmonella_enterica	0.5214	490.103 KB	3	aroC_5,dnaN_2,hemD_360,hisD_7,purE_6,sucA_6,thrA_11	1973	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_360	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJSL010000001.1 Salmonella enterica strain PNUSAS344586 SAMN34361000-rid17755713.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJSL010000023.1 Salmonella enterica strain PNUSAS344586 SAMN34361000-rid17755713.guided.18, whole genome shotgun sequence	4316..4753	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJSL010000012.1 Salmonella enterica strain PNUSAS344586 SAMN34361000-rid17755713.denovo.12, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABNJSL010000012.1 Salmonella enterica strain PNUSAS344586 SAMN34361000-rid17755713.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABNJSL010000002.1	553547..554416	99.54	870	0						
GCA_032372475.1_PDT001700924.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJSM010000001.1 Salmonella enterica strain PNUSAS344574 SAMN34361003-rid17757223.denovo.01, whole genome shotgun sequence	493020..493457	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJSM010000021.1 Salmonella enterica strain PNUSAS344574 SAMN34361003-rid17757223.guided.15, whole genome shotgun sequence	8147..8584	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJSM010000013.1 Salmonella enterica strain PNUSAS344574 SAMN34361003-rid17757223.denovo.13, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNJSM010000013.1 Salmonella enterica strain PNUSAS344574 SAMN34361003-rid17757223.denovo.13, whole genome shotgun sequence	53092..53353																																																avrA	ABNJSM010000002.1	553636..554505	99.54	870	0						
GCA_032372635.1_PDT001700710.1_genomic.fna	Salmonella_enterica	0.5214	222.811 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJSV010000001.1 Salmonella enterica strain PNUSAS344562 SAMN34356057-rid17754373.denovo.01, whole genome shotgun sequence	492243..492680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJSV010000047.1 Salmonella enterica strain PNUSAS344562 SAMN34356057-rid17754373.guided.23, whole genome shotgun sequence	7872..8309	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJSV010000018.1 Salmonella enterica strain PNUSAS344562 SAMN34356057-rid17754373.denovo.18, whole genome shotgun sequence	6137..6779	enterobacteriales	IncFII(S)	100	262 / 262	ABNJSV010000018.1 Salmonella enterica strain PNUSAS344562 SAMN34356057-rid17754373.denovo.18, whole genome shotgun sequence	21864..22125																																																avrA	ABNJSV010000002.1	209366..210235	99.885	870	0						
GCA_032372675.1_PDT001700709.1_genomic.fna	Salmonella_enterica	0.5208	341.062 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJSW010000001.1 Salmonella enterica strain PNUSAS344559 SAMN34356053-rid17754363.denovo.01, whole genome shotgun sequence	645054..645491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJSW010000031.1 Salmonella enterica strain PNUSAS344559 SAMN34356053-rid17754363.guided.27, whole genome shotgun sequence	7484..7921	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJSW010000002.1	741156..742024	99.54	870	0						
GCA_032372695.1_PDT001700707.1_genomic.fna	Salmonella_enterica	0.5204	166.261 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJSZ010000001.1 Salmonella enterica strain PNUSAS344561 SAMN34356056-rid17754343.denovo.01, whole genome shotgun sequence	581421..581858	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNJSZ010000042.1 Salmonella enterica strain PNUSAS344561 SAMN34356056-rid17754343.denovo.45, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABNJSZ010000045.1 Salmonella enterica strain PNUSAS344561 SAMN34356056-rid17754343.denovo.49, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJSZ010000045.1 Salmonella enterica strain PNUSAS344561 SAMN34356056-rid17754343.denovo.49, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNJSZ010000060.1 Salmonella enterica strain PNUSAS344561 SAMN34356056-rid17754343.guided.27, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJSZ010000063.1 Salmonella enterica strain PNUSAS344561 SAMN34356056-rid17754343.guided.48, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJSZ010000063.1 Salmonella enterica strain PNUSAS344561 SAMN34356056-rid17754343.guided.48, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNJSZ010000064.1 Salmonella enterica strain PNUSAS344561 SAMN34356056-rid17754343.guided.51, whole genome shotgun sequence	1840..2655	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EU722351	blaTEM-1B	100	861/861	ABNJSZ010000053.1 Salmonella enterica strain PNUSAS344561 SAMN34356056-rid17754343.denovo.59, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNJSZ010000065.1 Salmonella enterica strain PNUSAS344561 SAMN34356056-rid17754343.guided.58, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNJSZ010000045.1 Salmonella enterica strain PNUSAS344561 SAMN34356056-rid17754343.denovo.49, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNJSZ010000063.1 Salmonella enterica strain PNUSAS344561 SAMN34356056-rid17754343.guided.48, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNJSZ010000038.1 Salmonella enterica strain PNUSAS344561 SAMN34356056-rid17754343.denovo.40, whole genome shotgun sequence	4850..6055	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJSZ010000062.1 Salmonella enterica strain PNUSAS344561 SAMN34356056-rid17754343.guided.41, whole genome shotgun sequence	7025..8230	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncX1	98.66	374 / 374	ABNJSZ010000028.1 Salmonella enterica strain PNUSAS344561 SAMN34356056-rid17754343.denovo.29, whole genome shotgun sequence	6956..7329																																																						avrA	ABNJSZ010000008.1	93833..94702	99.885	870	0						
GCA_032372715.1_PDT001700706.1_genomic.fna	Salmonella_enterica	0.5231	239.5 KB	5	aroC_140,dnaN_105,hemD_85,hisD_93,purE_14,sucA_10,thrA_3	440	35:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_85	hisD	100	100	hisD_93	purE	100	100	purE_14	sucA	100	100	sucA_10	thrA	100	100	thrA_3	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJSY010000001.1 Salmonella enterica strain PNUSAS344557 SAMN34356055-rid17754333.denovo.01, whole genome shotgun sequence	462192..462629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJSY010000039.1 Salmonella enterica strain PNUSAS344557 SAMN34356055-rid17754333.guided.26, whole genome shotgun sequence	15853..16290	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNJSY010000029.1 Salmonella enterica strain PNUSAS344557 SAMN34356055-rid17754333.denovo.32, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	92.5	120 / 131	ABNJSY010000031.1 Salmonella enterica strain PNUSAS344557 SAMN34356055-rid17754333.denovo.34, whole genome shotgun sequence	1958..2077		enterobacteriales	Col440I	92.98	114 / 114	ABNJSY010000032.1 Salmonella enterica strain PNUSAS344557 SAMN34356055-rid17754333.denovo.35, whole genome shotgun sequence	571..684																																																				
GCA_032372735.1_PDT001700705.1_genomic.fna	Salmonella_enterica	0.521	373.034 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	4	Col440I,IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJSX010000003.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.denovo.03, whole genome shotgun sequence	159417..159854	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJSX010000023.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.denovo.23, whole genome shotgun sequence	326..1162	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJSX010000023.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.denovo.23, whole genome shotgun sequence	1162..1965	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNJSX010000036.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.denovo.45, whole genome shotgun sequence	137..952	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	V00359	aph(6)-Id	100	837/837	ABNJSX010000045.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.guided.28, whole genome shotgun sequence	17959..18795	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJSX010000045.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.guided.28, whole genome shotgun sequence	17156..17959	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNJSX010000047.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.guided.31, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNJSX010000052.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.guided.44, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	V00359	blaCMY-2	100	1146/1146	ABNJSX010000023.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.denovo.23, whole genome shotgun sequence	31182..32327	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNJSX010000034.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.denovo.39, whole genome shotgun sequence	884..1707	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNJSX010000034.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.denovo.39, whole genome shotgun sequence	884..1707	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNJSX010000034.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.denovo.39, whole genome shotgun sequence	884..1707	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNJSX010000046.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.guided.29, whole genome shotgun sequence	12061..13206	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNJSX010000051.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.guided.43, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNJSX010000051.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.guided.43, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNJSX010000051.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.guided.43, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.11	1214/1215	ABNJSX010000028.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.denovo.32, whole genome shotgun sequence	2629..3842	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNJSX010000050.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.guided.41, whole genome shotgun sequence	339..1552	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNJSX010000023.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.denovo.23, whole genome shotgun sequence	2026..2841	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNJSX010000045.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.guided.28, whole genome shotgun sequence	16280..17095	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNJSX010000028.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.denovo.32, whole genome shotgun sequence	754..2028	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJSX010000049.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.guided.40, whole genome shotgun sequence	775..2049	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																														gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	Col440I	93.69	111 / 114	ABNJSX010000032.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.denovo.36, whole genome shotgun sequence	339..449	enterobacteriales	IncC	100	417 / 417	ABNJSX010000021.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.denovo.21, whole genome shotgun sequence	17493..17909		enterobacteriales	IncFII(S)	97.71	262 / 262	ABNJSX010000018.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.denovo.18, whole genome shotgun sequence	16913..17172		enterobacteriales	IncX1	98.66	374 / 374	ABNJSX010000018.1 Salmonella enterica strain PNUSAS344560 SAMN34356054-rid17754323.denovo.18, whole genome shotgun sequence	52766..53139																																		avrA	ABNJSX010000007.1	173549..174417	99.54	870	0						
GCA_032372915.1_PDT001700708.1_genomic.fna	Salmonella_enterica	0.5223	49.566 KB	33	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNJTJ010000058.1 Salmonella enterica strain PNUSAS344563 SAMN34356059-rid17754353.denovo.058, whole genome shotgun sequence	12871..13305	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNJTJ010000178.1 Salmonella enterica strain PNUSAS344563 SAMN34356059-rid17754353.guided.083, whole genome shotgun sequence	15443..15877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032373035.1_PDT001700700.1_genomic.fna	Salmonella_enterica	0.5212	158.162 KB	10	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI1-I(Alpha),pXuzhou21	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJTK010000001.1 Salmonella enterica strain PNUSAS344558 SAMN34356058-rid17754273.denovo.01, whole genome shotgun sequence	20912..21349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJTK010000044.1 Salmonella enterica strain PNUSAS344558 SAMN34356058-rid17754273.guided.37, whole genome shotgun sequence	2060..2497	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJTK010000024.1 Salmonella enterica strain PNUSAS344558 SAMN34356058-rid17754273.denovo.24, whole genome shotgun sequence	82603..82744	enterobacteriales	pXuzhou21	99.86	720 / 720	ABNJTK010000032.1 Salmonella enterica strain PNUSAS344558 SAMN34356058-rid17754273.denovo.32, whole genome shotgun sequence	23692..24411																																																											
GCA_032373205.1_PDT001700695.1_genomic.fna	Salmonella_enterica	0.52	510.117 KB	3	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	Col(pHAD28),Col156,Col440I,ColRNAI	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJTO010000001.1 Salmonella enterica strain 23WA04CH01-S1 SAMN34354149-rid17754083.denovo.01, whole genome shotgun sequence	923816..924253	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJTO010000048.1 Salmonella enterica strain 23WA04CH01-S1 SAMN34354149-rid17754083.guided.19, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNJTO010000031.1 Salmonella enterica strain 23WA04CH01-S1 SAMN34354149-rid17754083.denovo.34, whole genome shotgun sequence	1708..1838	enterobacteriales	Col156	98.03	152 / 154	ABNJTO010000027.1 Salmonella enterica strain 23WA04CH01-S1 SAMN34354149-rid17754083.denovo.30, whole genome shotgun sequence	967..1118		enterobacteriales	Col440I	90.27	113 / 114	ABNJTO010000026.1 Salmonella enterica strain 23WA04CH01-S1 SAMN34354149-rid17754083.denovo.29, whole genome shotgun sequence	3345..3457		enterobacteriales	ColRNAI	90.83	109 / 130	ABNJTO010000023.1 Salmonella enterica strain 23WA04CH01-S1 SAMN34354149-rid17754083.denovo.26, whole genome shotgun sequence	1011..1119																																		avrA	ABNJTO010000003.1	162705..163574	98.966	870	0						
GCA_032373245.1_PDT001700694.1_genomic.fna	Salmonella_enterica	0.5218	198.474 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJTP010000001.1 Salmonella enterica strain 23WA04CL01-S1 SAMN34354148-rid17754073.denovo.01, whole genome shotgun sequence	367038..367475	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJTP010000036.1 Salmonella enterica strain 23WA04CL01-S1 SAMN34354148-rid17754073.denovo.37, whole genome shotgun sequence	13712..14503	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJTP010000036.1 Salmonella enterica strain 23WA04CL01-S1 SAMN34354148-rid17754073.denovo.37, whole genome shotgun sequence	13712..14503	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNJTP010000057.1 Salmonella enterica strain 23WA04CL01-S1 SAMN34354148-rid17754073.guided.40, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJTP010000058.1 Salmonella enterica strain 23WA04CL01-S1 SAMN34354148-rid17754073.guided.47, whole genome shotgun sequence	1257..2048	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJTP010000058.1 Salmonella enterica strain 23WA04CL01-S1 SAMN34354148-rid17754073.guided.47, whole genome shotgun sequence	1257..2048	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNJTP010000036.1 Salmonella enterica strain 23WA04CL01-S1 SAMN34354148-rid17754073.denovo.37, whole genome shotgun sequence	1..876	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNJTP010000060.1 Salmonella enterica strain 23WA04CL01-S1 SAMN34354148-rid17754073.guided.51, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNJTP010000044.1 Salmonella enterica strain 23WA04CL01-S1 SAMN34354148-rid17754073.denovo.49, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABNJTP010000059.1 Salmonella enterica strain 23WA04CL01-S1 SAMN34354148-rid17754073.guided.48, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABNJTP010000036.1 Salmonella enterica strain 23WA04CL01-S1 SAMN34354148-rid17754073.denovo.37, whole genome shotgun sequence	12368..13207	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJTP010000058.1 Salmonella enterica strain 23WA04CL01-S1 SAMN34354148-rid17754073.guided.47, whole genome shotgun sequence	2553..3392	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNJTP010000033.1 Salmonella enterica strain 23WA04CL01-S1 SAMN34354148-rid17754073.denovo.34, whole genome shotgun sequence	9109..9668																																																						avrA	ABNJTP010000002.1	94085..94954	99.655	870	0						
GCA_032373275.1_PDT001700693.1_genomic.fna	Salmonella_enterica	0.5171	128.811 KB	12	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJTQ010000023.1 Salmonella enterica strain 23WA04CG01-S1 SAMN34354150-rid17754223.denovo.23, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJTQ010000099.1 Salmonella enterica strain 23WA04CG01-S1 SAMN34354150-rid17754223.guided.47, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNJTQ010000038.1 Salmonella enterica strain 23WA04CG01-S1 SAMN34354150-rid17754223.denovo.39, whole genome shotgun sequence	28959..29285	enterobacteriales	IncHI2A	99.52	630 / 630	ABNJTQ010000051.1 Salmonella enterica strain 23WA04CG01-S1 SAMN34354150-rid17754223.denovo.53, whole genome shotgun sequence	13360..13989		enterobacteriales	IncX1	100	373 / 373	ABNJTQ010000069.1 Salmonella enterica strain 23WA04CG01-S1 SAMN34354150-rid17754223.denovo.72, whole genome shotgun sequence	1551..1923																																									avrA	ABNJTQ010000017.1	94076..94945	99.655	870	0						
GCA_032373645.1_PDT001700674.1_genomic.fna	Salmonella_enterica	0.5218	178.018 KB	8	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJUE010000001.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12216647 SAMN34353948-rid17753903.denovo.01, whole genome shotgun sequence	471495..471932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJUE010000055.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12216647 SAMN34353948-rid17753903.guided.24, whole genome shotgun sequence	15831..16268	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJUE010000008.1	140193..141061	99.195	870	0						
GCA_032373705.1_PDT001700667.1_genomic.fna	Salmonella_enterica	0.5214	705.054 KB	2	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNJUK010000001.1 Salmonella enterica strain PNUSAS344496 SAMN34353887-rid17753853.denovo.01, whole genome shotgun sequence	661121..661558	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNJUK010000022.1 Salmonella enterica strain PNUSAS344496 SAMN34353887-rid17753853.guided.12, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJUK010000002.1	575563..576431	99.655	869	0						
GCA_032373715.1_PDT001700666.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJUJ010000001.1 Salmonella enterica strain PNUSAS344505 SAMN34353893-rid17753843.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJUJ010000023.1 Salmonella enterica strain PNUSAS344505 SAMN34353893-rid17753843.guided.19, whole genome shotgun sequence	5539..5976	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJUJ010000012.1 Salmonella enterica strain PNUSAS344505 SAMN34353893-rid17753843.denovo.12, whole genome shotgun sequence	40541..41183	enterobacteriales	IncFII(S)	100	262 / 262	ABNJUJ010000016.1 Salmonella enterica strain PNUSAS344505 SAMN34353893-rid17753843.denovo.17, whole genome shotgun sequence	3402..3663																																																avrA	ABNJUJ010000002.1	553642..554511	99.54	870	0						
GCA_032373745.1_PDT001700668.1_genomic.fna	Salmonella_enterica	0.522	243.948 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJUI010000001.1 Salmonella enterica strain PNUSAS344476 SAMN34353883-rid17754183.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJUI010000041.1 Salmonella enterica strain PNUSAS344476 SAMN34353883-rid17754183.guided.33, whole genome shotgun sequence	1011..1448	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNJUI010000019.1 Salmonella enterica strain PNUSAS344476 SAMN34353883-rid17754183.denovo.19, whole genome shotgun sequence	65921..67126	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJUI010000040.1 Salmonella enterica strain PNUSAS344476 SAMN34353883-rid17754183.guided.32, whole genome shotgun sequence	1442..2647	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJUI010000019.1 Salmonella enterica strain PNUSAS344476 SAMN34353883-rid17754183.denovo.19, whole genome shotgun sequence	73512..73653																																																						avrA	ABNJUI010000002.1	39540..40409	99.655	870	0						
GCA_032373765.1_PDT001700665.1_genomic.fna	Salmonella_enterica	0.5214	442.837 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJUL010000001.1 Salmonella enterica strain PNUSAS344503 SAMN34353890-rid17753833.denovo.01, whole genome shotgun sequence	530245..530682	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJUL010000024.1 Salmonella enterica strain PNUSAS344503 SAMN34353890-rid17753833.guided.12, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJUL010000010.1	181315..182183	99.195	870	0						
GCA_032373805.1_PDT001700664.1_genomic.fna	Salmonella_enterica	0.5212	361.901 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJUN010000001.1 Salmonella enterica strain PNUSAS344501 SAMN34353891-rid17753823.denovo.01, whole genome shotgun sequence	836423..836860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJUN010000037.1 Salmonella enterica strain PNUSAS344501 SAMN34353891-rid17753823.guided.13, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNJUN010000027.1 Salmonella enterica strain PNUSAS344501 SAMN34353891-rid17753823.denovo.30, whole genome shotgun sequence	967..1095	enterobacteriales	ColRNAI	90.08	131 / 130	ABNJUN010000019.1 Salmonella enterica strain PNUSAS344501 SAMN34353891-rid17753823.denovo.22, whole genome shotgun sequence	3010..3140																																																avrA	ABNJUN010000006.1	129893..130762	98.966	870	0						
GCA_032373825.1_PDT001700663.1_genomic.fna	Salmonella_enterica	0.5215	711.406 KB	2	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJUM010000001.1 Salmonella enterica strain PNUSAS344504 SAMN34353892-rid17754173.denovo.01, whole genome shotgun sequence	664239..664676	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJUM010000019.1 Salmonella enterica strain PNUSAS344504 SAMN34353892-rid17754173.guided.12, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032373845.1_PDT001700662.1_genomic.fna	Salmonella_enterica	0.5212	640.352 KB	4	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNJUP010000001.1 Salmonella enterica strain PNUSAS344500 SAMN34353889-rid17753813.denovo.01, whole genome shotgun sequence	540039..540476	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNJUP010000024.1 Salmonella enterica strain PNUSAS344500 SAMN34353889-rid17753813.guided.17, whole genome shotgun sequence	9603..10040	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJUP010000004.1	545463..546331	99.655	869	0						
GCA_032373865.1_PDT001700659.1_genomic.fna	Salmonella_enterica	0.5206	581.757 KB	3	aroC_18,dnaN_7,hemD_128,hisD_9,purE_39,sucA_9,thrA_153	513	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_7	hemD	100	100	hemD_128	hisD	100	100	hisD_9	purE	100	100	purE_39	sucA	100	100	sucA_9	thrA	100	100	thrA_153	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNJUR010000001.1 Salmonella enterica strain PNUSAS344498 SAMN34353880-rid17753783.denovo.01, whole genome shotgun sequence	833013..833450	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNJUR010000017.1 Salmonella enterica strain PNUSAS344498 SAMN34353880-rid17753783.guided.10, whole genome shotgun sequence	16454..16891	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABNJUR010000004.1 Salmonella enterica strain PNUSAS344498 SAMN34353880-rid17753783.denovo.04, whole genome shotgun sequence	164455..164877	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNJUR010000019.1 Salmonella enterica strain PNUSAS344498 SAMN34353880-rid17753783.guided.15, whole genome shotgun sequence	20715..21137	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJUR010000002.1	557840..558709	99.54	870	0						
GCA_032373875.1_PDT001700661.1_genomic.fna	Salmonella_enterica	0.5216	714.718 KB	2	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNJUO010000001.1 Salmonella enterica strain PNUSAS344497 SAMN34353886-rid17753803.denovo.01, whole genome shotgun sequence	661121..661558	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNJUO010000024.1 Salmonella enterica strain PNUSAS344497 SAMN34353886-rid17753803.guided.12, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJUO010000003.1	575563..576431	99.655	869	0						
GCA_032373905.1_PDT001700660.1_genomic.fna	Salmonella_enterica	0.5201	413.273 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJUQ010000001.1 Salmonella enterica strain PNUSAS344499 SAMN34353888-rid17753793.denovo.01, whole genome shotgun sequence	738744..739181	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJUQ010000027.1 Salmonella enterica strain PNUSAS344499 SAMN34353888-rid17753793.guided.12, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032373925.1_PDT001700658.1_genomic.fna	Salmonella_enterica	0.5216	512.742 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJUS010000001.1 Salmonella enterica strain PNUSAS344507 SAMN34353881-rid17754163.denovo.01, whole genome shotgun sequence	684116..684553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJUS010000026.1 Salmonella enterica strain PNUSAS344507 SAMN34353881-rid17754163.guided.16, whole genome shotgun sequence	7481..7918	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNJUS010000020.1 Salmonella enterica strain PNUSAS344507 SAMN34353881-rid17754163.denovo.23, whole genome shotgun sequence	546..674																																																						avrA	ABNJUS010000003.1	108909..109778	99.77	870	0						
GCA_032373965.1_PDT001700657.1_genomic.fna	Salmonella_enterica	0.5207	413.269 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJUT010000001.1 Salmonella enterica strain PNUSAS344508 SAMN34353879-rid17753773.denovo.01, whole genome shotgun sequence	738744..739181	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJUT010000024.1 Salmonella enterica strain PNUSAS344508 SAMN34353879-rid17753773.guided.15, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032373985.1_PDT001700655.1_genomic.fna	Salmonella_enterica	0.5211	327.221 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJUU010000002.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.denovo.02, whole genome shotgun sequence	145342..145779	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJUU010000024.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.denovo.24, whole genome shotgun sequence	31733..32569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJUU010000024.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.denovo.24, whole genome shotgun sequence	30930..31733	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNJUU010000042.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.guided.31, whole genome shotgun sequence	4793..5629	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJUU010000042.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.guided.31, whole genome shotgun sequence	3990..4793	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNJUU010000044.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.guided.35, whole genome shotgun sequence	1158..1595	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNJUU010000024.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.denovo.24, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	823/861	ABNJUU010000031.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.denovo.36, whole genome shotgun sequence	3300..4122	Unknown Beta-lactam	KP050491	blaTEM-206	100	823/861	ABNJUU010000031.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.denovo.36, whole genome shotgun sequence	3300..4122	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	823/861	ABNJUU010000031.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.denovo.36, whole genome shotgun sequence	3300..4122	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNJUU010000040.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.guided.27, whole genome shotgun sequence	25227..26372	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNJUU010000046.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.guided.41, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNJUU010000046.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.guided.41, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNJUU010000046.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.guided.41, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNJUU010000024.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.denovo.24, whole genome shotgun sequence	35705..36918	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJUU010000045.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.guided.37, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNJUU010000024.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.denovo.24, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNJUU010000042.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.guided.31, whole genome shotgun sequence	3114..3929	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNJUU010000024.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.denovo.24, whole genome shotgun sequence	33830..35104	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJUU010000042.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.guided.31, whole genome shotgun sequence	6890..8164	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncC	100	417 / 417	ABNJUU010000022.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.denovo.22, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNJUU010000021.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.denovo.21, whole genome shotgun sequence	29613..29872		enterobacteriales	IncX1	98.66	374 / 374	ABNJUU010000021.1 Salmonella enterica strain PNUSAS344479 SAMN34353885-rid17753753.denovo.21, whole genome shotgun sequence	65467..65840																																									avrA	ABNJUU010000006.1	174682..175550	99.54	870	0						
GCA_032374005.1_PDT001700656.1_genomic.fna	Salmonella_enterica	0.521	478.499 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJUV010000001.1 Salmonella enterica strain PNUSAS344478 SAMN34353884-rid17753763.denovo.01, whole genome shotgun sequence	162506..162943	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJUV010000032.1 Salmonella enterica strain PNUSAS344478 SAMN34353884-rid17753763.guided.21, whole genome shotgun sequence	718..1155	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJUV010000016.1 Salmonella enterica strain PNUSAS344478 SAMN34353884-rid17753763.denovo.16, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABNJUV010000020.1 Salmonella enterica strain PNUSAS344478 SAMN34353884-rid17753763.denovo.23, whole genome shotgun sequence	3415..3676																																																avrA	ABNJUV010000002.1	584926..585795	99.54	870	0						
GCA_032374025.1_PDT001700654.1_genomic.fna	Salmonella_enterica	0.5212	456.207 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJUW010000005.1 Salmonella enterica strain PNUSAS344477 SAMN34353882-rid17753743.denovo.05, whole genome shotgun sequence	162504..162941	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJUW010000031.1 Salmonella enterica strain PNUSAS344477 SAMN34353882-rid17753743.guided.24, whole genome shotgun sequence	1192..1629	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJUW010000019.1 Salmonella enterica strain PNUSAS344477 SAMN34353882-rid17753743.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNJUW010000020.1 Salmonella enterica strain PNUSAS344477 SAMN34353882-rid17753743.denovo.22, whole genome shotgun sequence	3415..3676																																																avrA	ABNJUW010000001.1	585161..586030	99.54	870	0						
GCA_032374125.1_PDT001700652.1_genomic.fna	Salmonella_enterica	0.5209	489.854 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJVC010000001.1 Salmonella enterica strain PNUSAS344502 SAMN34353877-rid17753733.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJVC010000024.1 Salmonella enterica strain PNUSAS344502 SAMN34353877-rid17753733.guided.14, whole genome shotgun sequence	21567..22004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJVC010000011.1 Salmonella enterica strain PNUSAS344502 SAMN34353877-rid17753733.denovo.12, whole genome shotgun sequence	40482..41124																																																						avrA	ABNJVC010000002.1	505304..506173	99.54	870	0						
GCA_032374145.1_PDT001700653.1_genomic.fna	Salmonella_enterica	0.521	489.739 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJVB010000001.1 Salmonella enterica strain PNUSAS344506 SAMN34353878-rid17754153.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJVB010000024.1 Salmonella enterica strain PNUSAS344506 SAMN34353878-rid17754153.guided.10, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJVB010000011.1 Salmonella enterica strain PNUSAS344506 SAMN34353878-rid17754153.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNJVB010000014.1 Salmonella enterica strain PNUSAS344506 SAMN34353878-rid17754153.denovo.17, whole genome shotgun sequence	3424..3685																																																avrA	ABNJVB010000002.1	553181..554050	99.54	870	0						
GCA_032374305.1_PDT001700643.1_genomic.fna	Salmonella_enterica	0.5196	408.403 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pKPC-CAV1321	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJVI010000001.1 Salmonella enterica strain PNUSAS344457 SAMN34353572-rid17754133.denovo.01, whole genome shotgun sequence	827490..827927	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNJVI010000064.1 Salmonella enterica strain PNUSAS344457 SAMN34353572-rid17754133.guided.10, whole genome shotgun sequence	9842..10279	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1321	94.61	594 / 596	ABNJVI010000023.1 Salmonella enterica strain PNUSAS344457 SAMN34353572-rid17754133.denovo.26, whole genome shotgun sequence	487..1080																																																						avrA	ABNJVI010000002.1	544369..545237	99.425	870	0						
GCA_032375045.1_PDT001912836.1_genomic.fna	Salmonella_enterica	0.5181	130.454 KB	12	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	5	ColRNAI,IncHI2,IncHI2A,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNHZS010000013.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.denovo.013, whole genome shotgun sequence	85827..86264	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNHZS010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.denovo.048, whole genome shotgun sequence	2754..3590	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNHZS010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.denovo.048, whole genome shotgun sequence	1952..2754	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNHZS010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.denovo.048, whole genome shotgun sequence	1951..2754	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNHZS010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.denovo.048, whole genome shotgun sequence	1951..2754	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNHZS010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.denovo.048, whole genome shotgun sequence	1951..2754	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNHZS010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.guided.047, whole genome shotgun sequence	2795..3631	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNHZS010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.guided.047, whole genome shotgun sequence	1993..2795	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNHZS010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.guided.047, whole genome shotgun sequence	1992..2795	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNHZS010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.guided.047, whole genome shotgun sequence	1992..2795	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNHZS010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.guided.047, whole genome shotgun sequence	1992..2795	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNHZS010000124.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.guided.050, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	91.07	112 / 130	ABNHZS010000092.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.denovo.096, whole genome shotgun sequence	248..359	enterobacteriales	IncHI2	100	327 / 327	ABNHZS010000039.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.denovo.039, whole genome shotgun sequence	12764..13090		enterobacteriales	IncHI2A	99.37	630 / 630	ABNHZS010000039.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.denovo.039, whole genome shotgun sequence	31074..31703		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNHZS010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.denovo.046, whole genome shotgun sequence	10772..10913		enterobacteriales	IncX1	100	373 / 373	ABNHZS010000072.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325477 SAMN37661579-rid19586063.denovo.076, whole genome shotgun sequence	2153..2525																											avrA	ABNHZS010000028.1	39484..40353	99.655	870	0						
GCA_032375365.1_PDT001832047.1_genomic.fna	Salmonella_enterica	0.5199	307.95 KB	6	aroC_41,dnaN_332,hemD_411,hisD_16,purE_28!,purE_28!,sucA_14,thrA_96	Unknown	40:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_411	hisD	100	100	hisD_16	purE	100	100	purE_28!	purE	100	100	purE_28!	sucA	100	100	sucA_14	40	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Allandale		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNJVP010000002.1 Salmonella enterica subsp. enterica serovar Allandale strain SAL-22-VL-NY-FL-0004 SAMN36748257-rid18913333.denovo.02, whole genome shotgun sequence	386323..386760	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNJVP010000054.1 Salmonella enterica subsp. enterica serovar Allandale strain SAL-22-VL-NY-FL-0004 SAMN36748257-rid18913333.guided.23, whole genome shotgun sequence	13029..13466	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNJVP010000020.1 Salmonella enterica subsp. enterica serovar Allandale strain SAL-22-VL-NY-FL-0004 SAMN36748257-rid18913333.denovo.21, whole genome shotgun sequence	65491..66133																																																						avrA	ABNJVP010000001.1	624692..625561	99.54	870	0						
GCA_032375425.1_PDT001828890.1_genomic.fna	Salmonella_enterica	0.5211	729.094 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	2	IncC,IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJCU010000001.1 Salmonella enterica strain PNUSAS366072 SAMN36713622-rid18882573.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJCU010000013.1 Salmonella enterica strain PNUSAS366072 SAMN36713622-rid18882573.denovo.13, whole genome shotgun sequence	33294..34130	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJCU010000013.1 Salmonella enterica strain PNUSAS366072 SAMN36713622-rid18882573.denovo.13, whole genome shotgun sequence	32491..33294	Streptomycin	AF321551	aac(6')-Iaa	99.54	438/438	ABNJCU010000032.1 Salmonella enterica strain PNUSAS366072 SAMN36713622-rid18882573.guided.21, whole genome shotgun sequence	1043..1480	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJCU010000034.1 Salmonella enterica strain PNUSAS366072 SAMN36713622-rid18882573.guided.23, whole genome shotgun sequence	7702..8538	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNJCU010000034.1 Salmonella enterica strain PNUSAS366072 SAMN36713622-rid18882573.guided.23, whole genome shotgun sequence	6899..7702	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNJCU010000013.1 Salmonella enterica strain PNUSAS366072 SAMN36713622-rid18882573.denovo.13, whole genome shotgun sequence	2126..3271	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNJCU010000031.1 Salmonella enterica strain PNUSAS366072 SAMN36713622-rid18882573.guided.18, whole genome shotgun sequence	22321..23466	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.27	1214/1215	ABNJCU010000013.1 Salmonella enterica strain PNUSAS366072 SAMN36713622-rid18882573.denovo.13, whole genome shotgun sequence	37266..38479	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNJCU010000035.1 Salmonella enterica strain PNUSAS366072 SAMN36713622-rid18882573.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNJCU010000013.1 Salmonella enterica strain PNUSAS366072 SAMN36713622-rid18882573.denovo.13, whole genome shotgun sequence	31615..32430	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNJCU010000034.1 Salmonella enterica strain PNUSAS366072 SAMN36713622-rid18882573.guided.23, whole genome shotgun sequence	6023..6838	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNJCU010000013.1 Salmonella enterica strain PNUSAS366072 SAMN36713622-rid18882573.denovo.13, whole genome shotgun sequence	35391..36665	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJCU010000034.1 Salmonella enterica strain PNUSAS366072 SAMN36713622-rid18882573.guided.23, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncC	100	417 / 417	ABNJCU010000011.1 Salmonella enterica strain PNUSAS366072 SAMN36713622-rid18882573.denovo.11, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNJCU010000012.1 Salmonella enterica strain PNUSAS366072 SAMN36713622-rid18882573.denovo.12, whole genome shotgun sequence	15755..16288																																																avrA	ABNJCU010000002.1	561918..562788	99.656	871	0						
GCA_032379875.1_PDT001826535.1_genomic.fna	Salmonella_enterica	0.5198	697.085 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJVT010000001.1 Salmonella enterica strain PNUSAS365851 SAMN36697768-rid18859653.denovo.01, whole genome shotgun sequence	1109517..1109954	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNJVT010000026.1 Salmonella enterica strain PNUSAS365851 SAMN36697768-rid18859653.guided.12, whole genome shotgun sequence	21292..21729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJVT010000003.1	556069..556937	99.425	870	0						
GCA_032379975.1_PDT001826533.1_genomic.fna	Salmonella_enterica	0.5205	664.448 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJVW010000001.1 Salmonella enterica strain PNUSAS365849 SAMN36697766-rid18859633.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJVW010000024.1 Salmonella enterica strain PNUSAS365849 SAMN36697766-rid18859633.guided.12, whole genome shotgun sequence	31733..32170	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	ABNJVW010000019.1 Salmonella enterica strain PNUSAS365849 SAMN36697766-rid18859633.denovo.22, whole genome shotgun sequence	792..945	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJVW010000016.1 Salmonella enterica strain PNUSAS365849 SAMN36697766-rid18859633.denovo.17, whole genome shotgun sequence	6818..7460		enterobacteriales	IncFII(S)	100	262 / 262	ABNJVW010000017.1 Salmonella enterica strain PNUSAS365849 SAMN36697766-rid18859633.denovo.20, whole genome shotgun sequence	3413..3674		enterobacteriales	IncX1	98.93	374 / 374	ABNJVW010000012.1 Salmonella enterica strain PNUSAS365849 SAMN36697766-rid18859633.denovo.13, whole genome shotgun sequence	32011..32384																																		avrA	ABNJVW010000002.1	553567..554436	99.54	870	0						
GCA_032379995.1_PDT001826529.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJVV010000001.1 Salmonella enterica strain PNUSAS365839 SAMN36697756-rid18859593.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJVV010000027.1 Salmonella enterica strain PNUSAS365839 SAMN36697756-rid18859593.guided.15, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJVV010000015.1 Salmonella enterica strain PNUSAS365839 SAMN36697756-rid18859593.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNJVV010000017.1 Salmonella enterica strain PNUSAS365839 SAMN36697756-rid18859593.denovo.20, whole genome shotgun sequence	3412..3673																																																avrA	ABNJVV010000002.1	553635..554504	99.54	870	0						
GCA_032380055.1_PDT001826525.1_genomic.fna	Salmonella_enterica	0.5215	728.678 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,Col8282,IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJVU010000001.1 Salmonella enterica strain PNUSAS365843 SAMN36697761-rid18859553.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNJVU010000025.1 Salmonella enterica strain PNUSAS365843 SAMN36697761-rid18859553.guided.15, whole genome shotgun sequence	20652..21089	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	90.79	152 / 154	ABNJVU010000014.1 Salmonella enterica strain PNUSAS365843 SAMN36697761-rid18859553.denovo.17, whole genome shotgun sequence	3270..3421	enterobacteriales	Col8282	100	207 / 207	ABNJVU010000015.1 Salmonella enterica strain PNUSAS365843 SAMN36697761-rid18859553.denovo.18, whole genome shotgun sequence	414..620		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNJVU010000011.1 Salmonella enterica strain PNUSAS365843 SAMN36697761-rid18859553.denovo.11, whole genome shotgun sequence	70669..70810																																									avrA	ABNJVU010000003.1	553682..554551	99.655	870	0						
GCA_032380155.1_PDT001826514.1_genomic.fna	Salmonella_enterica	0.5212	489.854 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJVX010000001.1 Salmonella enterica strain PNUSAS365747 SAMN36697734-rid18859443.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJVX010000026.1 Salmonella enterica strain PNUSAS365747 SAMN36697734-rid18859443.guided.19, whole genome shotgun sequence	792..1229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJVX010000012.1 Salmonella enterica strain PNUSAS365747 SAMN36697734-rid18859443.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNJVX010000015.1 Salmonella enterica strain PNUSAS365747 SAMN36697734-rid18859443.denovo.17, whole genome shotgun sequence	3392..3653																																																avrA	ABNJVX010000002.1	553187..554056	99.54	870	0						
GCA_032380175.1_PDT001826516.1_genomic.fna	Salmonella_enterica	0.5211	257.839 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJVY010000002.1 Salmonella enterica strain PNUSAS365834 SAMN36697752-rid18859463.denovo.02, whole genome shotgun sequence	68378..68815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJVY010000042.1 Salmonella enterica strain PNUSAS365834 SAMN36697752-rid18859463.guided.17, whole genome shotgun sequence	35819..36256	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJVY010000021.1 Salmonella enterica strain PNUSAS365834 SAMN36697752-rid18859463.denovo.23, whole genome shotgun sequence	44738..45380	enterobacteriales	IncFII(S)	100	262 / 262	ABNJVY010000021.1 Salmonella enterica strain PNUSAS365834 SAMN36697752-rid18859463.denovo.23, whole genome shotgun sequence	29392..29653																																																avrA	ABNJVY010000007.1	94134..95002	100	869	0						
GCA_032380295.1_PDT001826503.1_genomic.fna	Salmonella_enterica	0.5196	740.08 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNJWD010000001.1 Salmonella enterica strain PNUSAS365736 SAMN36697715-rid18859333.denovo.01, whole genome shotgun sequence	1307190..1307627	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNJWD010000015.1 Salmonella enterica strain PNUSAS365736 SAMN36697715-rid18859333.guided.07, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJWD010000003.1	556454..557322	99.425	870	0						
GCA_032380355.1_PDT001826493.1_genomic.fna	Salmonella_enterica	0.5208	372.914 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJWE010000001.1 Salmonella enterica strain PNUSAS365752 SAMN36697728-rid18859233.denovo.01, whole genome shotgun sequence	498132..498569	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJWE010000029.1 Salmonella enterica strain PNUSAS365752 SAMN36697728-rid18859233.guided.21, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJWE010000003.1	140447..141316	99.425	870	0						
GCA_032380495.1_PDT001826481.1_genomic.fna	Salmonella_enterica	0.5207	521.667 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJWI010000001.1 Salmonella enterica strain PNUSAS365814 SAMN36697541-rid18859123.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJWI010000032.1 Salmonella enterica strain PNUSAS365814 SAMN36697541-rid18859123.guided.17, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJWI010000022.1 Salmonella enterica strain PNUSAS365814 SAMN36697541-rid18859123.denovo.25, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNJWI010000024.1 Salmonella enterica strain PNUSAS365814 SAMN36697541-rid18859123.denovo.27, whole genome shotgun sequence	3398..3659																																																avrA	ABNJWI010000002.1	553193..554062	99.54	870	0						
GCA_032380615.1_PDT001826479.1_genomic.fna	Salmonella_enterica	0.5199	518.746 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJWJ010000003.1 Salmonella enterica strain PNUSAS365816 SAMN36697540-rid18859113.denovo.03, whole genome shotgun sequence	414591..415028	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJWJ010000021.1 Salmonella enterica strain PNUSAS365816 SAMN36697540-rid18859113.guided.13, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	97.91	191 / 193	ABNJWJ010000020.1 Salmonella enterica strain PNUSAS365816 SAMN36697540-rid18859113.denovo.23, whole genome shotgun sequence	1534..1724																																																																	
GCA_032380635.1_PDT001826478.1_genomic.fna	Salmonella_enterica	0.5219	386.582 KB	5	aroC_114,dnaN_3,hemD_8,hisD_114,purE_76,sucA_9,thrA_109	312	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_114	dnaN	100	100	dnaN_3	hemD	100	100	hemD_8	hisD	100	100	hisD_114	purE	100	100	purE_76	sucA	100	100	sucA_9	thrA	100	100	thrA_109	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJWL010000001.1 Salmonella enterica strain PNUSAS365813 SAMN36697539-rid18858383.denovo.01, whole genome shotgun sequence	585127..585564	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJWL010000038.1 Salmonella enterica strain PNUSAS365813 SAMN36697539-rid18858383.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJWL010000003.1	96603..97472	99.08	870	0						
GCA_032380695.1_PDT001826476.1_genomic.fna	Salmonella_enterica	0.522	208.731 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJWM010000001.1 Salmonella enterica strain PNUSAS365812 SAMN36697537-rid18859093.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJWM010000053.1 Salmonella enterica strain PNUSAS365812 SAMN36697537-rid18859093.guided.42, whole genome shotgun sequence	4037..4474	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJWM010000027.1 Salmonella enterica strain PNUSAS365812 SAMN36697537-rid18859093.denovo.27, whole genome shotgun sequence	44717..45359	enterobacteriales	IncFII(S)	100	262 / 262	ABNJWM010000027.1 Salmonella enterica strain PNUSAS365812 SAMN36697537-rid18859093.denovo.27, whole genome shotgun sequence	29371..29632																																																avrA	ABNJWM010000007.1	39580..40448	100	869	0						
GCA_032380735.1_PDT001826471.1_genomic.fna	Salmonella_enterica	0.522	759.041 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJWN010000001.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.denovo.01, whole genome shotgun sequence	462724..463161	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJWN010000021.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.denovo.25, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNJWN010000035.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.guided.12, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJWN010000037.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.guided.24, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNJWN010000021.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.denovo.25, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNJWN010000037.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.guided.24, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNJWN010000019.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.denovo.22, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNJWN010000038.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.guided.27, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNJWN010000018.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.denovo.21, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJWN010000039.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.guided.28, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNJWN010000021.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.denovo.25, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNJWN010000037.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.guided.24, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNJWN010000024.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.denovo.32, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJWN010000041.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.guided.31, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNJWN010000018.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.denovo.21, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJWN010000040.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.guided.29, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNJWN010000018.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.denovo.21, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNJWN010000040.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.guided.29, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNJWN010000015.1 Salmonella enterica strain PNUSAS365779 SAMN36697403-rid18859053.denovo.18, whole genome shotgun sequence	4434..4684																																																						avrA	ABNJWN010000003.1	553474..554343	99.77	870	0						
GCA_032380835.1_PDT001826470.1_genomic.fna	Salmonella_enterica	0.5235	342.679 KB	5	aroC_84,dnaN_76,hemD_38,hisD_16,purE_12,sucA_13,thrA_4	226	6,14:b:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_76	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	6,14	b	1,7	Salmonella enterica subspecies enterica (subspecies I)	Tucson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJWO010000001.1 Salmonella enterica strain PNUSAS365788 SAMN36697393-rid18858363.denovo.01, whole genome shotgun sequence	529519..529956	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJWO010000034.1 Salmonella enterica strain PNUSAS365788 SAMN36697393-rid18858363.guided.22, whole genome shotgun sequence	20467..20904	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJWO010000002.1	142366..143235	98.966	870	0						
GCA_032380855.1_PDT001826467.1_genomic.fna	Salmonella_enterica	0.5211	759.368 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJWP010000001.1 Salmonella enterica strain PNUSAS365772 SAMN36697400-rid18859023.denovo.01, whole genome shotgun sequence	162450..162887	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJWP010000025.1 Salmonella enterica strain PNUSAS365772 SAMN36697400-rid18859023.guided.18, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJWP010000017.1 Salmonella enterica strain PNUSAS365772 SAMN36697400-rid18859023.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNJWP010000014.1 Salmonella enterica strain PNUSAS365772 SAMN36697400-rid18859023.denovo.14, whole genome shotgun sequence	4416..4677																																																avrA	ABNJWP010000003.1	584142..585011	99.54	870	0						
GCA_032380915.1_PDT001826466.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJWQ010000001.1 Salmonella enterica strain PNUSAS365774 SAMN36697402-rid18859013.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJWQ010000032.1 Salmonella enterica strain PNUSAS365774 SAMN36697402-rid18859013.guided.22, whole genome shotgun sequence	3428..3865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJWQ010000020.1 Salmonella enterica strain PNUSAS365774 SAMN36697402-rid18859013.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNJWQ010000022.1 Salmonella enterica strain PNUSAS365774 SAMN36697402-rid18859013.denovo.25, whole genome shotgun sequence	3346..3607																																																avrA	ABNJWQ010000002.1	553635..554504	99.54	870	0						
GCA_032380935.1_PDT001826465.1_genomic.fna	Salmonella_enterica	0.5223	269.469 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJWR010000001.1 Salmonella enterica strain PNUSAS365773 SAMN36697401-rid18858353.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJWR010000036.1 Salmonella enterica strain PNUSAS365773 SAMN36697401-rid18858353.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJWR010000002.1	149828..150697	99.655	870	0						
GCA_032380945.1_PDT001826464.1_genomic.fna	Salmonella_enterica	0.5213	392.258 KB	4	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJWT010000001.1 Salmonella enterica strain PNUSAS365787 SAMN36697398-rid18859003.denovo.01, whole genome shotgun sequence	933426..933863	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJWT010000031.1 Salmonella enterica strain PNUSAS365787 SAMN36697398-rid18859003.guided.22, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032381055.1_PDT001826462.1_genomic.fna	Salmonella_enterica	0.5221	393.592 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJWS010000001.1 Salmonella enterica strain PNUSAS365789 SAMN36697396-rid18858983.denovo.01, whole genome shotgun sequence	446976..447413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJWS010000026.1 Salmonella enterica strain PNUSAS365789 SAMN36697396-rid18858983.guided.17, whole genome shotgun sequence	20566..21003	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032381075.1_PDT001826461.1_genomic.fna	Salmonella_enterica	0.5219	701.105 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	Col440I,IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJWU010000001.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.denovo.01, whole genome shotgun sequence	172127..172564	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJWU010000021.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.denovo.24, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNJWU010000032.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.guided.14, whole genome shotgun sequence	20568..21005	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJWU010000036.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.guided.29, whole genome shotgun sequence	2424..3203	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNJWU010000021.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.denovo.24, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNJWU010000036.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.guided.29, whole genome shotgun sequence	1428..2294	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNJWU010000019.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.denovo.22, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNJWU010000037.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.guided.31, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNJWU010000018.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.denovo.21, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJWU010000034.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNJWU010000021.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.denovo.24, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNJWU010000036.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.guided.29, whole genome shotgun sequence	512..1168	Ciprofloxacin	AY070235	sul1	100	840/840	ABNJWU010000025.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.denovo.33, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJWU010000038.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.guided.32, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNJWU010000018.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.denovo.21, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNJWU010000035.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.guided.28, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNJWU010000018.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.denovo.21, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNJWU010000035.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.guided.28, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	ABNJWU010000023.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.denovo.26, whole genome shotgun sequence	3345..3457	enterobacteriales	IncR	100	251 / 251	ABNJWU010000015.1 Salmonella enterica strain PNUSAS365780 SAMN36697523-rid18858973.denovo.18, whole genome shotgun sequence	4434..4684																																																avrA	ABNJWU010000002.1	553534..554403	99.77	870	0						
GCA_032381095.1_PDT001826460.1_genomic.fna	Salmonella_enterica	0.5196	309.988 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJWV010000001.1 Salmonella enterica strain PNUSAS365775 SAMN36697391-rid18858343.denovo.01, whole genome shotgun sequence	486107..486544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJWV010000040.1 Salmonella enterica strain PNUSAS365775 SAMN36697391-rid18858343.guided.19, whole genome shotgun sequence	36805..37242	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNJWV010000004.1 Salmonella enterica strain PNUSAS365775 SAMN36697391-rid18858343.denovo.04, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNJWV010000041.1 Salmonella enterica strain PNUSAS365775 SAMN36697391-rid18858343.guided.26, whole genome shotgun sequence	16565..16987	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJWV010000002.1	169368..170237	99.195	870	0						
GCA_032381115.1_PDT001826459.1_genomic.fna	Salmonella_enterica	0.522	443.313 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJWW010000001.1 Salmonella enterica strain PNUSAS365786 SAMN36697522-rid18858963.denovo.01, whole genome shotgun sequence	477378..477815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJWW010000025.1 Salmonella enterica strain PNUSAS365786 SAMN36697522-rid18858963.guided.17, whole genome shotgun sequence	20576..21013	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJWW010000010.1	175904..176772	99.195	870	0						
GCA_032381155.1_PDT001826456.1_genomic.fna	Salmonella_enterica	0.5215	390.853 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJWX010000001.1 Salmonella enterica strain PNUSAS365776 SAMN36697390-rid18858933.denovo.01, whole genome shotgun sequence	561489..561926	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJWX010000034.1 Salmonella enterica strain PNUSAS365776 SAMN36697390-rid18858933.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJWX010000010.1	162163..163031	99.195	870	0						
GCA_032381255.1_PDT001826450.1_genomic.fna	Salmonella_enterica	0.521	440.064 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJXB010000001.1 Salmonella enterica strain PNUSAS365798 SAMN36697318-rid18858323.denovo.01, whole genome shotgun sequence	787638..788075	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJXB010000023.1 Salmonella enterica strain PNUSAS365798 SAMN36697318-rid18858323.guided.13, whole genome shotgun sequence	43989..44426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJXB010000012.1 Salmonella enterica strain PNUSAS365798 SAMN36697318-rid18858323.denovo.14, whole genome shotgun sequence	36763..37405	enterobacteriales	IncFII(S)	100	262 / 262	ABNJXB010000012.1 Salmonella enterica strain PNUSAS365798 SAMN36697318-rid18858323.denovo.14, whole genome shotgun sequence	42855..43116																																																avrA	ABNJXB010000002.1	553153..554022	99.54	870	0						
GCA_032381275.1_PDT001826453.1_genomic.fna	Salmonella_enterica	0.5207	592.179 KB	4	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJXA010000001.1 Salmonella enterica strain PNUSAS365792 SAMN36697315-rid18858913.denovo.01, whole genome shotgun sequence	624780..625217	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJXA010000025.1 Salmonella enterica strain PNUSAS365792 SAMN36697315-rid18858913.guided.10, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	ABNJXA010000017.1 Salmonella enterica strain PNUSAS365792 SAMN36697315-rid18858913.denovo.20, whole genome shotgun sequence	1189..1298																																																																	
GCA_032381295.1_PDT001826455.1_genomic.fna	Salmonella_enterica	0.5206	384.988 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJWZ010000001.1 Salmonella enterica strain PNUSAS365781 SAMN36697399-rid18858333.denovo.01, whole genome shotgun sequence	642138..642575	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJWZ010000021.1 Salmonella enterica strain PNUSAS365781 SAMN36697399-rid18858333.guided.15, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032381635.1_PDT001826468.1_genomic.fna	Salmonella_enterica	0.5218	278.475 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJXJ010000003.1 Salmonella enterica strain PNUSAS365778 SAMN36697524-rid18859033.denovo.03, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJXJ010000037.1 Salmonella enterica strain PNUSAS365778 SAMN36697524-rid18859033.guided.29, whole genome shotgun sequence	7958..8395	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJXJ010000021.1 Salmonella enterica strain PNUSAS365778 SAMN36697524-rid18859033.denovo.21, whole genome shotgun sequence	44729..45371	enterobacteriales	IncFII(S)	100	262 / 262	ABNJXJ010000021.1 Salmonella enterica strain PNUSAS365778 SAMN36697524-rid18859033.denovo.21, whole genome shotgun sequence	29383..29644																																																avrA	ABNJXJ010000001.1	446752..447620	100	869	0						
GCA_032381655.1_PDT001826458.1_genomic.fna	Salmonella_enterica	0.5219	443.924 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJXK010000001.1 Salmonella enterica strain PNUSAS365784 SAMN36697389-rid18858953.denovo.01, whole genome shotgun sequence	839841..840278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJXK010000038.1 Salmonella enterica strain PNUSAS365784 SAMN36697389-rid18858953.guided.18, whole genome shotgun sequence	21817..22254	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJXK010000003.1	183135..184004	98.966	870	0						
GCA_032381675.1_PDT001826457.1_genomic.fna	Salmonella_enterica	0.5205	432.371 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNJXL010000004.1 Salmonella enterica strain PNUSAS365782 SAMN36697394-rid18858943.denovo.04, whole genome shotgun sequence	253103..253540	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNJXL010000034.1 Salmonella enterica strain PNUSAS365782 SAMN36697394-rid18858943.guided.20, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032381695.1_PDT001826451.1_genomic.fna	Salmonella_enterica	0.5209	261.878 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJXN010000001.1 Salmonella enterica strain PNUSAS365793 SAMN36697320-rid18858893.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJXN010000037.1 Salmonella enterica strain PNUSAS365793 SAMN36697320-rid18858893.guided.20, whole genome shotgun sequence	44280..44717	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJXN010000020.1 Salmonella enterica strain PNUSAS365793 SAMN36697320-rid18858893.denovo.21, whole genome shotgun sequence	34958..35491																																																						avrA	ABNJXN010000010.1	134933..135802	99.425	870	0						
GCA_032381715.1_PDT001826449.1_genomic.fna	Salmonella_enterica	0.5224	406.102 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJXM010000001.1 Salmonella enterica strain PNUSAS365799 SAMN36697314-rid18858883.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJXM010000028.1 Salmonella enterica strain PNUSAS365799 SAMN36697314-rid18858883.guided.10, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJXM010000003.1	149828..150697	99.655	870	0						
GCA_032381735.1_PDT001826448.1_genomic.fna	Salmonella_enterica	0.5207	465.913 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJXO010000001.1 Salmonella enterica strain PNUSAS365801 SAMN36697319-rid18858313.denovo.01, whole genome shotgun sequence	1331695..1332132	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJXO010000022.1 Salmonella enterica strain PNUSAS365801 SAMN36697319-rid18858313.guided.11, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJXO010000008.1	175192..176060	99.195	870	0						
GCA_032381755.1_PDT001826447.1_genomic.fna	Salmonella_enterica	0.5207	204.025 KB	7	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNJXV010000001.1 Salmonella enterica strain PNUSAS365783 SAMN36697322-rid18858873.denovo.01, whole genome shotgun sequence	346836..347273	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNJXV010000043.1 Salmonella enterica strain PNUSAS365783 SAMN36697322-rid18858873.guided.27, whole genome shotgun sequence	16344..16781	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJXV010000004.1	151002..151871	99.54	870	0						
GCA_032382555.1_PDT001914691.1_genomic.fna	Salmonella_enterica	0.5216	161.067 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-65,blaCTX-M-65	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJYC010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310219 SAMN37668569-rid19598633.denovo.01, whole genome shotgun sequence	198097..198534	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJYC010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310219 SAMN37668569-rid19598633.guided.40, whole genome shotgun sequence	12387..12824	Amikacin, Tobramycin	NC_003197	blaCTX-M-65	100	876/876	ABNJYC010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310219 SAMN37668569-rid19598633.denovo.74, whole genome shotgun sequence	1701..2576	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNJYC010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310219 SAMN37668569-rid19598633.guided.79, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNJYC010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310219 SAMN37668569-rid19598633.denovo.55, whole genome shotgun sequence	3577..4136																																																						avrA	ABNJYC010000027.1	39536..40405	99.655	870	0						
GCA_032382575.1_PDT001914690.1_genomic.fna	Salmonella_enterica	0.5194	115.472 KB	15	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	7	aac(6')-Iaa,aadA12,aph(3')-Ia,aac(6')-Iaa,aadA12,aph(3')-Ia,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul1,sul1,tet(B),tet(B)	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),IncHI2,IncHI2A	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJYB010000007.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.denovo.007, whole genome shotgun sequence	57230..57667	Amikacin, Tobramycin	NC_003197	aadA12	100	792/792	ABNJYB010000029.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.denovo.029, whole genome shotgun sequence	11298..12089	Spectinomycin, Streptomycin	AY665771	aph(3')-Ia	99.75	816/816	ABNJYB010000083.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.denovo.091, whole genome shotgun sequence	525..1340	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU855787	aac(6')-Iaa	99.77	438/438	ABNJYB010000100.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.guided.059, whole genome shotgun sequence	8077..8514	Amikacin, Tobramycin	NC_003197	aadA12	100	792/792	ABNJYB010000101.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.guided.066, whole genome shotgun sequence	3310..4101	Spectinomycin, Streptomycin	AY665771	aph(3')-Ia	99.75	816/816	ABNJYB010000106.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.guided.089, whole genome shotgun sequence	106..921	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU855787	blaTEM-1B	100	861/861	ABNJYB010000069.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.denovo.073, whole genome shotgun sequence	3188..4048	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNJYB010000105.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.guided.084, whole genome shotgun sequence	1318..2178	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNJYB010000076.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.denovo.081, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNJYB010000104.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.guided.083, whole genome shotgun sequence	720..1364	Ciprofloxacin	EU432277	sul1	100	840/840	ABNJYB010000029.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.denovo.029, whole genome shotgun sequence	9954..10793	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJYB010000101.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.guided.066, whole genome shotgun sequence	4606..5445	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABNJYB010000072.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.denovo.076, whole genome shotgun sequence	2342..3547	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNJYB010000103.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.guided.079, whole genome shotgun sequence	2373..3578	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNJYB010000076.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.denovo.081, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNJYB010000104.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.guided.083, whole genome shotgun sequence	64..194		enterobacteriales	IncHI2	100	327 / 327	ABNJYB010000050.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.denovo.051, whole genome shotgun sequence	18910..19236		enterobacteriales	IncHI2A	99.52	630 / 630	ABNJYB010000057.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310214 SAMN37668570-rid19600123.denovo.058, whole genome shotgun sequence	6755..7384																																		avrA	ABNJYB010000008.1	36961..37830	99.425	870	0						
GCA_032382595.1_PDT001914689.1_genomic.fna	Salmonella_enterica	0.5217	219.324 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJYD010000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310216 SAMN37668566-rid19598623.denovo.05, whole genome shotgun sequence	96496..96933	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNJYD010000069.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310216 SAMN37668566-rid19598623.guided.49, whole genome shotgun sequence	7458..7895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNJYD010000053.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310216 SAMN37668566-rid19598623.denovo.56, whole genome shotgun sequence	188..318	enterobacteriales	IncFIB(S)	100	643 / 643	ABNJYD010000044.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310216 SAMN37668566-rid19598623.denovo.45, whole genome shotgun sequence	6826..7468		enterobacteriales	IncFII(S)	100	262 / 262	ABNJYD010000045.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310216 SAMN37668566-rid19598623.denovo.47, whole genome shotgun sequence	9327..9588																																									avrA	ABNJYD010000001.1	208334..209203	99.885	870	0						
GCA_032382615.1_PDT001914688.1_genomic.fna	Salmonella_enterica	0.5206	101.672 KB	15	aroC_10,dnaN_7!,dnaN_7!,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	Unknown	4:i:1,2	6	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul1,sul1,tet(A),tet(A)	0		3	Col(pHAD28),Col156,IncFII	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7!	dnaN	100	100	dnaN_7!	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJYE010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310217 SAMN37668567-rid19597053.denovo.001, whole genome shotgun sequence	162386..162823	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNJYE010000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310217 SAMN37668567-rid19597053.denovo.011, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABNJYE010000103.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310217 SAMN37668567-rid19597053.guided.043, whole genome shotgun sequence	34673..35452	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNJYE010000104.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310217 SAMN37668567-rid19597053.guided.050, whole genome shotgun sequence	24928..25365	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNJYE010000067.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310217 SAMN37668567-rid19597053.denovo.071, whole genome shotgun sequence	7212..8072	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNJYE010000107.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310217 SAMN37668567-rid19597053.guided.084, whole genome shotgun sequence	76..936	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNJYE010000082.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310217 SAMN37668567-rid19597053.denovo.088, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNJYE010000108.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310217 SAMN37668567-rid19597053.guided.094, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul1	100	840/840	ABNJYE010000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310217 SAMN37668567-rid19597053.denovo.011, whole genome shotgun sequence	60117..60956	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJYE010000103.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310217 SAMN37668567-rid19597053.guided.043, whole genome shotgun sequence	35957..36796	Sulfamethoxazole	U12338	tet(A)	99.92	1200/1200	ABNJYE010000077.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310217 SAMN37668567-rid19597053.denovo.082, whole genome shotgun sequence	2385..3584	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNJYE010000106.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310217 SAMN37668567-rid19597053.guided.081, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	100	131 / 131	ABNJYE010000082.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310217 SAMN37668567-rid19597053.denovo.088, whole genome shotgun sequence	1150..1280	enterobacteriales	Col156	94.81	154 / 154	ABNJYE010000072.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310217 SAMN37668567-rid19597053.denovo.076, whole genome shotgun sequence	792..945		enterobacteriales	IncFII	99.62	261 / 261	ABNJYE010000061.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310217 SAMN37668567-rid19597053.denovo.064, whole genome shotgun sequence	4059..4319																																									avrA	ABNJYE010000012.1	108093..108962	99.885	870	0						
GCA_032382635.1_PDT001914424.1_genomic.fna	Salmonella_enterica	0.5181	282.525 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:1,2	9	aac(6')-Iaa,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,lnu(G),lnu(G),sul1,sul2,sul1,sul2,tet(B),tet(B)	0		3	IncFIA(HI1),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQADQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.denovo.01, whole genome shotgun sequence	581162..581599	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	DAQADQ010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.denovo.21, whole genome shotgun sequence	2184..2975	Spectinomycin, Streptomycin	FJ591054	aph(6)-Id	100	837/837	DAQADQ010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.denovo.47, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQADQ010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.denovo.47, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	DAQADQ010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.guided.35, whole genome shotgun sequence	24837..25274	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	DAQADQ010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.guided.38, whole genome shotgun sequence	5444..6235	Spectinomycin, Streptomycin	FJ591054	aph(6)-Id	100	837/837	DAQADQ010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.guided.46, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQADQ010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.guided.46, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQADQ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.denovo.53, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQADQ010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.guided.52, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	lnu(G)	100	804/804	DAQADQ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.denovo.13, whole genome shotgun sequence	6171..6974	Lincomycin	KX470419	lnu(G)	100	804/804	DAQADQ010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.guided.27, whole genome shotgun sequence	28403..29206	Lincomycin	KX470419	sul1	100	840/840	DAQADQ010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.denovo.21, whole genome shotgun sequence	840..1679	Sulfamethoxazole	U12338	sul2	100	816/816	DAQADQ010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.denovo.47, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQADQ010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.guided.38, whole genome shotgun sequence	6740..7579	Sulfamethoxazole	U12338	sul2	100	816/816	DAQADQ010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.guided.46, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	DAQADQ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.denovo.13, whole genome shotgun sequence	424..1629	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQADQ010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.guided.27, whole genome shotgun sequence	33748..34953	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIA(HI1)	100	388 / 388	DAQADQ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.denovo.13, whole genome shotgun sequence	50530..50917	enterobacteriales	IncHI1A	99.76	420 / 420	DAQADQ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.denovo.22, whole genome shotgun sequence	40598..41017		enterobacteriales	IncHI1B(R27)	100	540 / 540	DAQADQ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S283 isolate S283_swine_DK_2018 SAMEA113940711-rid19596543.denovo.22, whole genome shotgun sequence	26982..27521	R27																																								avrA	DAQADQ010000002.1	539642..540511	99.885	870	0						
GCA_032382895.1_PDT001914708.1_genomic.fna	Salmonella_enterica	0.519	235.126 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJYK010000001.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32310148 SAMN37668601-rid19597073.denovo.01, whole genome shotgun sequence	486112..486549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJYK010000049.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32310148 SAMN37668601-rid19597073.guided.21, whole genome shotgun sequence	20590..21027	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNJYK010000004.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32310148 SAMN37668601-rid19597073.denovo.04, whole genome shotgun sequence	18006..18428	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNJYK010000051.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32310148 SAMN37668601-rid19597073.guided.32, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJYK010000002.1	123230..124099	99.195	870	0						
GCA_032383795.1_PDT001914692.1_genomic.fna	Salmonella_enterica	0.5225	216.45 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJYM010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310218 SAMN37668568-rid19601563.denovo.01, whole genome shotgun sequence	460178..460615	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJYM010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310218 SAMN37668568-rid19601563.guided.29, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJYM010000002.1	149895..150764	99.655	870	0						
GCA_032383935.1_PDT001914018.1_genomic.fna	Salmonella_enterica	0.5207	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul2,sul1,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAFS010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 58M225 SAMEA112364926-rid19598763.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAFS010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 58M225 SAMEA112364926-rid19598763.denovo.53, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAFS010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 58M225 SAMEA112364926-rid19598763.denovo.53, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAFS010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 58M225 SAMEA112364926-rid19598763.guided.55, whole genome shotgun sequence	3155..3589	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAFS010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 58M225 SAMEA112364926-rid19598763.guided.56, whole genome shotgun sequence	2443..3279	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAFS010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 58M225 SAMEA112364926-rid19598763.guided.56, whole genome shotgun sequence	1640..2443	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQAFS010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 58M225 SAMEA112364926-rid19598763.denovo.62, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAFS010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 58M225 SAMEA112364926-rid19598763.guided.65, whole genome shotgun sequence	106..966	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAFS010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 58M225 SAMEA112364926-rid19598763.denovo.42, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAFS010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 58M225 SAMEA112364926-rid19598763.guided.52, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAFS010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 58M225 SAMEA112364926-rid19598763.denovo.42, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAFS010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 58M225 SAMEA112364926-rid19598763.denovo.53, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	DAQAFS010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 58M225 SAMEA112364926-rid19598763.guided.56, whole genome shotgun sequence	764..1579	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAFS010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 58M225 SAMEA112364926-rid19598763.guided.58, whole genome shotgun sequence	2061..2900	Sulfamethoxazole	U12338	dfrA7	100	474/474	DAQAFS010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 58M225 SAMEA112364926-rid19598763.denovo.42, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAFS010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 58M225 SAMEA112364926-rid19598763.guided.58, whole genome shotgun sequence	1017..1490	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032383955.1_PDT001914017.1_genomic.fna	Salmonella_enterica	0.5207	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,blaTEM-1B,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul1,sul2,sul2,dfrA7,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAFX010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAFX010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.denovo.50, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAFX010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.denovo.50, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAFX010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.guided.40, whole genome shotgun sequence	9576..10010	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	99.75	804/804	DAQAFX010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.guided.65, whole genome shotgun sequence	583..1386	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAQAFX010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.guided.66, whole genome shotgun sequence	583..1386	Streptomycin	AF321551	aph(6)-Id	99.88	837/837	DAQAFX010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.guided.69, whole genome shotgun sequence	601..1437	Streptomycin	M28829	aph(6)-Id	100	837/837	DAQAFX010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.guided.70, whole genome shotgun sequence	601..1437	Streptomycin	M28829	blaTEM-1B	100	861/861	DAQAFX010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.denovo.62, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	99.88	861/861	DAQAFX010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.guided.60, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAFX010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.guided.61, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAFX010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.denovo.43, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAFX010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.guided.64, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAFX010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.denovo.43, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAFX010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.denovo.50, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	99.88	840/840	DAQAFX010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.guided.51, whole genome shotgun sequence	3313..4152	Sulfamethoxazole	U12338	sul1	100	840/840	DAQAFX010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.guided.52, whole genome shotgun sequence	3313..4152	Sulfamethoxazole	U12338	sul2	99.88	816/816	DAQAFX010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.guided.67, whole genome shotgun sequence	545..1360	Sulfamethoxazole	HQ840942	sul2	100	816/816	DAQAFX010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.guided.68, whole genome shotgun sequence	545..1360	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQAFX010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.denovo.43, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAFX010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.guided.51, whole genome shotgun sequence	2269..2742	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAFX010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 54M132 SAMEA112364922-rid19600573.guided.52, whole genome shotgun sequence	2269..2742	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																														gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032383975.1_PDT001914016.1_genomic.fna	Salmonella_enterica	0.5207	161.067 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAFW010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 53M131 SAMEA112364921-rid19595673.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAFW010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 53M131 SAMEA112364921-rid19595673.denovo.51, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAFW010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 53M131 SAMEA112364921-rid19595673.denovo.51, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQAFW010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 53M131 SAMEA112364921-rid19595673.guided.54, whole genome shotgun sequence	1733..2569	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAFW010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 53M131 SAMEA112364921-rid19595673.guided.54, whole genome shotgun sequence	930..1733	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAFW010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 53M131 SAMEA112364921-rid19595673.guided.56, whole genome shotgun sequence	603..1037	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQAFW010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 53M131 SAMEA112364921-rid19595673.denovo.61, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAFW010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 53M131 SAMEA112364921-rid19595673.guided.60, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAFW010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 53M131 SAMEA112364921-rid19595673.denovo.43, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAFW010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 53M131 SAMEA112364921-rid19595673.guided.42, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAFW010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 53M131 SAMEA112364921-rid19595673.denovo.43, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAFW010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 53M131 SAMEA112364921-rid19595673.denovo.51, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAFW010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 53M131 SAMEA112364921-rid19595673.guided.42, whole genome shotgun sequence	7991..8830	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAFW010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 53M131 SAMEA112364921-rid19595673.guided.54, whole genome shotgun sequence	54..869	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQAFW010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 53M131 SAMEA112364921-rid19595673.denovo.43, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAFW010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 53M131 SAMEA112364921-rid19595673.guided.42, whole genome shotgun sequence	6947..7420	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032383995.1_PDT001914015.1_genomic.fna	Salmonella_enterica	0.5206	172.065 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAFY010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAFY010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.denovo.51, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAFY010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.denovo.51, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAFY010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.guided.40, whole genome shotgun sequence	11682..12116	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAFY010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.guided.56, whole genome shotgun sequence	2249..3085	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAFY010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.guided.56, whole genome shotgun sequence	1446..2249	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQAFY010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.denovo.63, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAFY010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.guided.61, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	99.88	861/861	DAQAFY010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.guided.62, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAFY010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.denovo.44, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAFY010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.guided.67, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAFY010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.denovo.44, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAFY010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.denovo.51, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAFY010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.guided.54, whole genome shotgun sequence	2210..3049	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAFY010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.guided.56, whole genome shotgun sequence	570..1385	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQAFY010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.denovo.44, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAFY010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 52M130 SAMEA112364920-rid19598753.guided.54, whole genome shotgun sequence	1166..1639	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032384015.1_PDT001914014.1_genomic.fna	Salmonella_enterica	0.5207	161.067 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAFT010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 51M127 SAMEA112364919-rid19597143.denovo.09, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAFT010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 51M127 SAMEA112364919-rid19597143.denovo.50, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAFT010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 51M127 SAMEA112364919-rid19597143.denovo.50, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQAFT010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 51M127 SAMEA112364919-rid19597143.guided.53, whole genome shotgun sequence	2139..2975	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAFT010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 51M127 SAMEA112364919-rid19597143.guided.53, whole genome shotgun sequence	1336..2139	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAFT010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 51M127 SAMEA112364919-rid19597143.guided.54, whole genome shotgun sequence	470..904	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQAFT010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 51M127 SAMEA112364919-rid19597143.denovo.59, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAFT010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 51M127 SAMEA112364919-rid19597143.guided.62, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAFT010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 51M127 SAMEA112364919-rid19597143.denovo.41, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAFT010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 51M127 SAMEA112364919-rid19597143.guided.63, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAFT010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 51M127 SAMEA112364919-rid19597143.denovo.41, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAFT010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 51M127 SAMEA112364919-rid19597143.denovo.50, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAFT010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 51M127 SAMEA112364919-rid19597143.guided.44, whole genome shotgun sequence	6374..7213	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAFT010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 51M127 SAMEA112364919-rid19597143.guided.53, whole genome shotgun sequence	460..1275	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQAFT010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 51M127 SAMEA112364919-rid19597143.denovo.41, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAFT010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 51M127 SAMEA112364919-rid19597143.guided.44, whole genome shotgun sequence	5330..5803	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032384035.1_PDT001914013.1_genomic.fna	Salmonella_enterica	0.5208	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul1,sul2,dfrA7,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAFV010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAFV010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.denovo.49, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAFV010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.denovo.49, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAFV010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.guided.39, whole genome shotgun sequence	9763..10197	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAFV010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.guided.57, whole genome shotgun sequence	1697..2533	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAFV010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.guided.57, whole genome shotgun sequence	894..1697	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQAFV010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.denovo.60, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAFV010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.guided.66, whole genome shotgun sequence	3..863	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAFV010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.denovo.41, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAFV010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.guided.48, whole genome shotgun sequence	14..673	Chloramphenicol	V00622	sul1	100	840/840	DAQAFV010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.denovo.41, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAFV010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.denovo.49, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAFV010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.guided.51, whole genome shotgun sequence	2847..3686	Sulfamethoxazole	U12338	sul1	100	840/840	DAQAFV010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.guided.52, whole genome shotgun sequence	2847..3686	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAFV010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.guided.57, whole genome shotgun sequence	18..833	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQAFV010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.denovo.41, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	99.79	474/474	DAQAFV010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.guided.51, whole genome shotgun sequence	1803..2276	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAFV010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 48M109 SAMEA112364916-rid19598743.guided.52, whole genome shotgun sequence	1803..2276	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																										gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032384055.1_PDT001914011.1_genomic.fna	Salmonella_enterica	0.5208	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAFU010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 42M33 SAMEA112364910-rid19595663.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAFU010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 42M33 SAMEA112364910-rid19595663.denovo.53, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAFU010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 42M33 SAMEA112364910-rid19595663.denovo.53, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAFU010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 42M33 SAMEA112364910-rid19595663.guided.50, whole genome shotgun sequence	3093..3527	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAFU010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 42M33 SAMEA112364910-rid19595663.guided.52, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAFU010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 42M33 SAMEA112364910-rid19595663.guided.52, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQAFU010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 42M33 SAMEA112364910-rid19595663.denovo.59, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAFU010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 42M33 SAMEA112364910-rid19595663.guided.63, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAFU010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 42M33 SAMEA112364910-rid19595663.denovo.42, whole genome shotgun sequence	8088..8747	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAFU010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 42M33 SAMEA112364910-rid19595663.guided.41, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAFU010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 42M33 SAMEA112364910-rid19595663.denovo.42, whole genome shotgun sequence	181..1020	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAFU010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 42M33 SAMEA112364910-rid19595663.denovo.53, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAFU010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 42M33 SAMEA112364910-rid19595663.guided.41, whole genome shotgun sequence	7991..8830	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAFU010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 42M33 SAMEA112364910-rid19595663.guided.52, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQAFU010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 42M33 SAMEA112364910-rid19595663.denovo.42, whole genome shotgun sequence	1591..2064	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAFU010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 42M33 SAMEA112364910-rid19595663.guided.41, whole genome shotgun sequence	6947..7420	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032384075.1_PDT001914010.1_genomic.fna	Salmonella_enterica	0.5207	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,catA1,sul1,sul2,sul2,sul1,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAFZ010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAFZ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.denovo.51, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAFZ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.denovo.51, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAFZ010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.guided.50, whole genome shotgun sequence	2122..2556	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAFZ010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.guided.53, whole genome shotgun sequence	3361..4197	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAFZ010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.guided.53, whole genome shotgun sequence	2558..3361	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQAFZ010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.denovo.60, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAFZ010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.guided.64, whole genome shotgun sequence	60..920	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAFZ010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.denovo.43, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAFZ010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.guided.70, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	catA1	99.7	660/660	DAQAFZ010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.guided.71, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAFZ010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.denovo.43, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAFZ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.denovo.51, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	DAQAFZ010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.guided.53, whole genome shotgun sequence	1682..2497	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAFZ010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.guided.62, whole genome shotgun sequence	582..1421	Sulfamethoxazole	U12338	dfrA7	100	474/474	DAQAFZ010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.denovo.43, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAFZ010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 41M30 SAMEA112364909-rid19598733.guided.63, whole genome shotgun sequence	1043..1516	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032384095.1_PDT001914009.1_genomic.fna	Salmonella_enterica	0.5207	161.067 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,catA1,sul1,sul2,sul2,sul1,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAGA010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.denovo.09, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAGA010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.denovo.49, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGA010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.denovo.49, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAGA010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.guided.47, whole genome shotgun sequence	4219..4653	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAGA010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.guided.48, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGA010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.guided.48, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQAGA010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.denovo.59, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAGA010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.guided.60, whole genome shotgun sequence	376..1236	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAGA010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.denovo.42, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.7	660/660	DAQAGA010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.guided.54, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAGA010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.guided.55, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAGA010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.denovo.42, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAGA010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.denovo.49, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	DAQAGA010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.guided.48, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAGA010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.guided.51, whole genome shotgun sequence	2890..3729	Sulfamethoxazole	U12338	dfrA7	100	474/474	DAQAGA010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.denovo.42, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAGA010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 39M11 SAMEA112364907-rid19597133.guided.51, whole genome shotgun sequence	1846..2319	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032384115.1_PDT001914008.1_genomic.fna	Salmonella_enterica	0.5207	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul2,sul1,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAGB010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 38M8 SAMEA112364906-rid19600193.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAGB010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 38M8 SAMEA112364906-rid19600193.denovo.46, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGB010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 38M8 SAMEA112364906-rid19600193.denovo.46, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAGB010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 38M8 SAMEA112364906-rid19600193.guided.45, whole genome shotgun sequence	4139..4573	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAGB010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 38M8 SAMEA112364906-rid19600193.guided.48, whole genome shotgun sequence	2993..3829	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGB010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 38M8 SAMEA112364906-rid19600193.guided.48, whole genome shotgun sequence	2190..2993	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQAGB010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 38M8 SAMEA112364906-rid19600193.denovo.57, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAGB010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 38M8 SAMEA112364906-rid19600193.guided.56, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAGB010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 38M8 SAMEA112364906-rid19600193.denovo.39, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAGB010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 38M8 SAMEA112364906-rid19600193.guided.58, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAGB010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 38M8 SAMEA112364906-rid19600193.denovo.39, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAGB010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 38M8 SAMEA112364906-rid19600193.denovo.46, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	DAQAGB010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 38M8 SAMEA112364906-rid19600193.guided.48, whole genome shotgun sequence	1314..2129	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAGB010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 38M8 SAMEA112364906-rid19600193.guided.50, whole genome shotgun sequence	1987..2826	Sulfamethoxazole	U12338	dfrA7	100	474/474	DAQAGB010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 38M8 SAMEA112364906-rid19600193.denovo.39, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAGB010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 38M8 SAMEA112364906-rid19600193.guided.50, whole genome shotgun sequence	943..1416	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032384135.1_PDT001914006.1_genomic.fna	Salmonella_enterica	0.5208	161.067 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,catA1,catA1,catA1,sul1,sul2,sul1,sul1,sul2,dfrA7,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAGD010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.denovo.09, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAGD010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.denovo.52, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGD010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.denovo.52, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQAGD010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.guided.51, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGD010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.guided.51, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAGD010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.guided.56, whole genome shotgun sequence	138..572	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQAGD010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.denovo.62, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAGD010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.guided.64, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAGD010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.denovo.43, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAGD010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.guided.41, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAGD010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.guided.42, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAGD010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.denovo.43, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAGD010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.denovo.52, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	99.88	840/840	DAQAGD010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.guided.41, whole genome shotgun sequence	7991..8830	Sulfamethoxazole	U12338	sul1	100	840/840	DAQAGD010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.guided.42, whole genome shotgun sequence	7991..8830	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAGD010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.guided.51, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQAGD010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.denovo.43, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAGD010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.guided.41, whole genome shotgun sequence	6947..7420	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAGD010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 36L257 SAMEA112364904-rid19601633.guided.42, whole genome shotgun sequence	6947..7420	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																			gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032384155.1_PDT001914005.1_genomic.fna	Salmonella_enterica	0.5208	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul2,sul2,sul1,dfrA7,dfrA7	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAGC010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAGC010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.denovo.50, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGC010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.denovo.50, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAGC010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.guided.47, whole genome shotgun sequence	1637..2071	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAGC010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.guided.48, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGC010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.guided.48, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	aph(6)-Id	99.88	837/837	DAQAGC010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.guided.49, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGC010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.guided.49, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQAGC010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.denovo.65, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAGC010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.guided.64, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAGC010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.denovo.40, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAGC010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.guided.51, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAGC010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.denovo.40, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAGC010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.denovo.50, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	DAQAGC010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.guided.48, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	sul2	100	816/816	DAQAGC010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.guided.49, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAGC010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.guided.55, whole genome shotgun sequence	2416..3255	Sulfamethoxazole	U12338	dfrA7	100	474/474	DAQAGC010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.denovo.40, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAGC010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 34L232 SAMEA112364902-rid19598723.guided.55, whole genome shotgun sequence	1372..1845	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																																																																																													
GCA_032384235.1_PDT001914007.1_genomic.fna	Salmonella_enterica	0.5208	161.067 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAGF010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 37M7 SAMEA112364905-rid19600563.denovo.09, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAGF010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 37M7 SAMEA112364905-rid19600563.denovo.49, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGF010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 37M7 SAMEA112364905-rid19600563.denovo.49, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQAGF010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 37M7 SAMEA112364905-rid19600563.guided.48, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGF010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 37M7 SAMEA112364905-rid19600563.guided.48, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQAGF010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 37M7 SAMEA112364905-rid19600563.denovo.56, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAGF010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 37M7 SAMEA112364905-rid19600563.guided.55, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAGF010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 37M7 SAMEA112364905-rid19600563.denovo.43, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAGF010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 37M7 SAMEA112364905-rid19600563.guided.42, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAGF010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 37M7 SAMEA112364905-rid19600563.denovo.43, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAGF010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 37M7 SAMEA112364905-rid19600563.denovo.49, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAGF010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 37M7 SAMEA112364905-rid19600563.guided.42, whole genome shotgun sequence	7991..8830	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAGF010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 37M7 SAMEA112364905-rid19600563.guided.48, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQAGF010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 37M7 SAMEA112364905-rid19600563.denovo.43, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAGF010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 37M7 SAMEA112364905-rid19600563.guided.42, whole genome shotgun sequence	6947..7420	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																															gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032384415.1_PDT001914801.1_genomic.fna	Salmonella_enterica	0.521	405.765 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAGS010000003.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759863-rid19603613.denovo.03, whole genome shotgun sequence	155746..156183	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAGS010000038.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759863-rid19603613.guided.22, whole genome shotgun sequence	2853..3290	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAGS010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759863-rid19603613.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAGS010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759863-rid19603613.denovo.15, whole genome shotgun sequence	63437..63696		enterobacteriales	IncX1	98.66	374 / 374	DAQAGS010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759863-rid19603613.denovo.15, whole genome shotgun sequence	24684..25057																																									avrA	DAQAGS010000001.1	504306..505174	99.655	870	0						
GCA_032384475.1_PDT001914774.1_genomic.fna	Salmonella_enterica	0.521	417.068 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAGV010000005.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759819-rid19603353.denovo.05, whole genome shotgun sequence	155774..156211	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAGV010000033.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759819-rid19603353.guided.21, whole genome shotgun sequence	13781..14218	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAGV010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759819-rid19603353.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAGV010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759819-rid19603353.denovo.14, whole genome shotgun sequence	63437..63696		enterobacteriales	IncX1	98.66	374 / 374	DAQAGV010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759819-rid19603353.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAGV010000001.1	504306..505174	99.655	870	0						
GCA_032384535.1_PDT001914004.1_genomic.fna	Salmonella_enterica	0.5207	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAGT010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 31L191 SAMEA112364899-rid19597123.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAGT010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 31L191 SAMEA112364899-rid19597123.denovo.52, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGT010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 31L191 SAMEA112364899-rid19597123.denovo.52, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAGT010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 31L191 SAMEA112364899-rid19597123.guided.46, whole genome shotgun sequence	5298..5732	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAGT010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 31L191 SAMEA112364899-rid19597123.guided.51, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGT010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 31L191 SAMEA112364899-rid19597123.guided.51, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQAGT010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 31L191 SAMEA112364899-rid19597123.denovo.60, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAGT010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 31L191 SAMEA112364899-rid19597123.guided.59, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAGT010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 31L191 SAMEA112364899-rid19597123.denovo.43, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAGT010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 31L191 SAMEA112364899-rid19597123.guided.42, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAGT010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 31L191 SAMEA112364899-rid19597123.denovo.43, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAGT010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 31L191 SAMEA112364899-rid19597123.denovo.52, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAGT010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 31L191 SAMEA112364899-rid19597123.guided.42, whole genome shotgun sequence	7991..8830	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAGT010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 31L191 SAMEA112364899-rid19597123.guided.51, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQAGT010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 31L191 SAMEA112364899-rid19597123.denovo.43, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAGT010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 31L191 SAMEA112364899-rid19597123.guided.42, whole genome shotgun sequence	6947..7420	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032384575.1_PDT001914003.1_genomic.fna	Salmonella_enterica	0.5207	161.067 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAGU010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.denovo.09, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAGU010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.denovo.51, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGU010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.denovo.51, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQAGU010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.guided.50, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGU010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.guided.50, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAGU010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.guided.54, whole genome shotgun sequence	1089..1523	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.24	435/438	DAQAGU010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.guided.55, whole genome shotgun sequence	1089..1523	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQAGU010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.denovo.60, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAGU010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.guided.59, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAGU010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.denovo.44, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAGU010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.guided.43, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAGU010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.denovo.44, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAGU010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.denovo.51, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAGU010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.guided.43, whole genome shotgun sequence	7991..8830	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAGU010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.guided.50, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQAGU010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.denovo.44, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAGU010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 30L150 SAMEA112364898-rid19598713.guided.43, whole genome shotgun sequence	6947..7420	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032384595.1_PDT001914002.1_genomic.fna	Salmonella_enterica	0.5207	154.992 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA7,dfrA7	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAGW010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 28L107 SAMEA112364896-rid19601623.denovo.09, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAGW010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 28L107 SAMEA112364896-rid19601623.denovo.51, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGW010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 28L107 SAMEA112364896-rid19601623.denovo.51, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQAGW010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 28L107 SAMEA112364896-rid19601623.guided.50, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGW010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 28L107 SAMEA112364896-rid19601623.guided.50, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAGW010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 28L107 SAMEA112364896-rid19601623.guided.55, whole genome shotgun sequence	2547..2981	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQAGW010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 28L107 SAMEA112364896-rid19601623.denovo.63, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAGW010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 28L107 SAMEA112364896-rid19601623.guided.62, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAGW010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 28L107 SAMEA112364896-rid19601623.denovo.44, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAGW010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 28L107 SAMEA112364896-rid19601623.guided.43, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAGW010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 28L107 SAMEA112364896-rid19601623.denovo.44, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAGW010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 28L107 SAMEA112364896-rid19601623.denovo.51, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAGW010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 28L107 SAMEA112364896-rid19601623.guided.43, whole genome shotgun sequence	7991..8830	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAGW010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 28L107 SAMEA112364896-rid19601623.guided.50, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQAGW010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 28L107 SAMEA112364896-rid19601623.denovo.44, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAGW010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 28L107 SAMEA112364896-rid19601623.guided.43, whole genome shotgun sequence	6947..7420	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																																																																																																																		
GCA_032384615.1_PDT001914001.1_genomic.fna	Salmonella_enterica	0.5207	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,blaTEM-1B,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul2,sul2,sul1,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAGX010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.denovo.11, whole genome shotgun sequence	29908..30342	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAGX010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.denovo.47, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGX010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.denovo.47, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAGX010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.guided.46, whole genome shotgun sequence	3336..3770	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	99.88	804/804	DAQAGX010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.guided.49, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	DAQAGX010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.guided.50, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQAGX010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.guided.65, whole genome shotgun sequence	100..936	Streptomycin	M28829	aph(6)-Id	99.88	837/837	DAQAGX010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.guided.66, whole genome shotgun sequence	100..936	Streptomycin	M28829	blaTEM-1B	100	861/861	DAQAGX010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.denovo.56, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	99.88	861/861	DAQAGX010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.guided.58, whole genome shotgun sequence	441..1301	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAGX010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.guided.59, whole genome shotgun sequence	441..1301	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAGX010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.denovo.38, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAGX010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.guided.67, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAGX010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.denovo.38, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAGX010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.denovo.47, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	DAQAGX010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.guided.49, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	sul2	100	816/816	DAQAGX010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.guided.50, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAGX010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.guided.52, whole genome shotgun sequence	1979..2818	Sulfamethoxazole	U12338	dfrA7	100	474/474	DAQAGX010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.denovo.38, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAGX010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 24F129 SAMEA112364892-rid19595653.guided.52, whole genome shotgun sequence	935..1408	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																												gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032384635.1_PDT001913999.1_genomic.fna	Salmonella_enterica	0.5209	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,sul2,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAGY010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAGY010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.denovo.52, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGY010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.denovo.52, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAGY010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.guided.40, whole genome shotgun sequence	9223..9657	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	837/837	DAQAGY010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.guided.50, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGY010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.guided.50, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQAGY010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.guided.51, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAGY010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.guided.51, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQAGY010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.denovo.59, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAGY010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.guided.58, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAGY010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.denovo.41, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAGY010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.guided.66, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAGY010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.denovo.41, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAGY010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.denovo.52, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAGY010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.guided.43, whole genome shotgun sequence	7011..7850	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAGY010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.guided.50, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	sul2	100	816/816	DAQAGY010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.guided.51, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQAGY010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.denovo.41, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAGY010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 18F80 SAMEA112364886-rid19597113.guided.43, whole genome shotgun sequence	5967..6440	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																			gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032384715.1_PDT001911872.1_genomic.fna	Salmonella_enterica	0.5216	312.848 KB	6	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJYS010000001.1 Salmonella enterica strain PNUSAS388062 SAMN37648377-rid19576773.denovo.01, whole genome shotgun sequence	133819..134256	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNJYS010000033.1 Salmonella enterica strain PNUSAS388062 SAMN37648377-rid19576773.guided.28, whole genome shotgun sequence	6020..6457	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032384855.1_PDT001826445.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJYY010000001.1 Salmonella enterica strain PNUSAS365795 SAMN36697321-rid18858303.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJYY010000023.1 Salmonella enterica strain PNUSAS365795 SAMN36697321-rid18858303.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJYY010000012.1 Salmonella enterica strain PNUSAS365795 SAMN36697321-rid18858303.denovo.14, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNJYY010000016.1 Salmonella enterica strain PNUSAS365795 SAMN36697321-rid18858303.denovo.19, whole genome shotgun sequence	3407..3668																																																avrA	ABNJYY010000002.1	553636..554505	99.54	870	0						
GCA_032384895.1_PDT001826443.1_genomic.fna	Salmonella_enterica	0.5216	341.368 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5!,purE_5!,sucA_9,thrA_2	Unknown	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5!	purE	100	100	purE_5!	sucA	100	100	sucA_9	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJZA010000004.1 Salmonella enterica strain PNUSAS365796 SAMN36697317-rid18858293.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJZA010000037.1 Salmonella enterica strain PNUSAS365796 SAMN36697317-rid18858293.guided.16, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJZA010000015.1 Salmonella enterica strain PNUSAS365796 SAMN36697317-rid18858293.denovo.17, whole genome shotgun sequence	48460..49102	enterobacteriales	IncFII(S)	100	262 / 262	ABNJZA010000015.1 Salmonella enterica strain PNUSAS365796 SAMN36697317-rid18858293.denovo.17, whole genome shotgun sequence	64187..64448																																																avrA	ABNJZA010000001.1	446742..447610	100	869	0						
GCA_032384915.1_PDT001826444.1_genomic.fna	Salmonella_enterica	0.5205	341.891 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJYX010000003.1 Salmonella enterica strain PNUSAS365794 SAMN36697312-rid18858853.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJYX010000040.1 Salmonella enterica strain PNUSAS365794 SAMN36697312-rid18858853.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJYX010000016.1 Salmonella enterica strain PNUSAS365794 SAMN36697312-rid18858853.denovo.17, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	ABNJYX010000016.1 Salmonella enterica strain PNUSAS365794 SAMN36697312-rid18858853.denovo.17, whole genome shotgun sequence	64139..64400																																																avrA	ABNJYX010000005.1	175018..175886	100	869	0						
GCA_032384935.1_PDT001826446.1_genomic.fna	Salmonella_enterica	0.5209	478.724 KB	3	aroC_5,dnaN_2,hemD_360,hisD_7,purE_6,sucA_6,thrA_11	1973	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_360	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJYW010000001.1 Salmonella enterica strain PNUSAS365800 SAMN36697313-rid18858863.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJYW010000021.1 Salmonella enterica strain PNUSAS365800 SAMN36697313-rid18858863.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJYW010000002.1	553362..554231	99.54	870	0						
GCA_032384955.1_PDT001826430.1_genomic.fna	Salmonella_enterica	0.5225	121.979 KB	13	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNJZB010000006.1 Salmonella enterica strain PNUSAS365727 SAMN36696990-rid18858243.denovo.06, whole genome shotgun sequence	16068..16505	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNJZB010000076.1 Salmonella enterica strain PNUSAS365727 SAMN36696990-rid18858243.guided.48, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNJZB010000008.1	95115..95983	99.195	870	0						
GCA_032385315.1_PDT001826401.1_genomic.fna	Salmonella_enterica	0.5218	405.34 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNJZE010000001.1 Salmonella enterica strain PNUSAS365676 SAMN36696570-rid18858553.denovo.01, whole genome shotgun sequence	456549..456986	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNJZE010000022.1 Salmonella enterica strain PNUSAS365676 SAMN36696570-rid18858553.guided.18, whole genome shotgun sequence	2657..3094	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJZE010000002.1	149708..150577	99.425	870	0						
GCA_032385335.1_PDT001914808.1_genomic.fna	Salmonella_enterica	0.5211	476.801 KB	3	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAHT010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759873-rid19603673.denovo.01, whole genome shotgun sequence	794359..794796	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAHT010000030.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759873-rid19603673.guided.21, whole genome shotgun sequence	1714..2151	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAHT010000012.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759873-rid19603673.denovo.12, whole genome shotgun sequence	63410..63669	enterobacteriales	IncX1	98.66	374 / 374	DAQAHT010000012.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759873-rid19603673.denovo.12, whole genome shotgun sequence	24697..25070																																																avrA	DAQAHT010000002.1	504111..504979	99.655	870	0						
GCA_032385355.1_PDT001914810.1_genomic.fna	Salmonella_enterica	0.5211	402.375 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAHR010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759876-rid19603693.denovo.04, whole genome shotgun sequence	155746..156183	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAHR010000035.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759876-rid19603693.guided.17, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAHR010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759876-rid19603693.denovo.26, whole genome shotgun sequence	1293..1423																																																						avrA	DAQAHR010000001.1	504305..505173	99.655	870	0						
GCA_032385375.1_PDT001914807.1_genomic.fna	Salmonella_enterica	0.521	405.781 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAHS010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759872-rid19603663.denovo.01, whole genome shotgun sequence	800630..801067	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAHS010000030.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759872-rid19603663.guided.16, whole genome shotgun sequence	15933..16370	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAHS010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759872-rid19603663.denovo.13, whole genome shotgun sequence	63410..63669	enterobacteriales	IncX1	98.66	374 / 374	DAQAHS010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759872-rid19603663.denovo.13, whole genome shotgun sequence	24697..25070																																																avrA	DAQAHS010000002.1	504111..504979	99.655	870	0						
GCA_032385395.1_PDT001914806.1_genomic.fna	Salmonella_enterica	0.521	362.983 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAHU010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759871-rid19603653.denovo.01, whole genome shotgun sequence	462481..462918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAHU010000033.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759871-rid19603653.guided.21, whole genome shotgun sequence	10557..10994	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAHU010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759871-rid19603653.denovo.15, whole genome shotgun sequence	63410..63669	enterobacteriales	IncX1	98.66	374 / 374	DAQAHU010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759871-rid19603653.denovo.15, whole genome shotgun sequence	24697..25070																																																avrA	DAQAHU010000002.1	504111..504979	99.655	870	0						
GCA_032385415.1_PDT001914805.1_genomic.fna	Salmonella_enterica	0.5211	362.98 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAHV010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759870-rid19603643.denovo.01, whole genome shotgun sequence	462330..462767	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAHV010000047.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759870-rid19603643.guided.30, whole genome shotgun sequence	13077..13514	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAHV010000016.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759870-rid19603643.denovo.16, whole genome shotgun sequence	63410..63669	enterobacteriales	IncX1	98.66	374 / 374	DAQAHV010000016.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759870-rid19603643.denovo.16, whole genome shotgun sequence	24697..25070																																																avrA	DAQAHV010000002.1	504111..504979	99.655	870	0						
GCA_032385435.1_PDT001914802.1_genomic.fna	Salmonella_enterica	0.5204	406.375 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAHX010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759865-rid19603623.denovo.04, whole genome shotgun sequence	149764..150201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAHX010000036.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759865-rid19603623.guided.19, whole genome shotgun sequence	9835..10272	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAHX010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759865-rid19603623.denovo.25, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAHX010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759865-rid19603623.denovo.15, whole genome shotgun sequence	63409..63668		enterobacteriales	IncX1	98.66	374 / 374	DAQAHX010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759865-rid19603623.denovo.15, whole genome shotgun sequence	24683..25056																																									avrA	DAQAHX010000001.1	504575..505443	99.655	870	0						
GCA_032385455.1_PDT001914803.1_genomic.fna	Salmonella_enterica	0.5204	417.037 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa	0		5	ColRNAI,IncFIB(AP001918),IncFII(S),IncFII(pCoo),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAHW010000005.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759866-rid19603633.denovo.05, whole genome shotgun sequence	155743..156180	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	ColRNAI	90.08	131 / 130	DAQAHW010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759866-rid19603633.denovo.24, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFIB(AP001918)	99.27	682 / 682	DAQAHW010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759866-rid19603633.denovo.13, whole genome shotgun sequence	80579..81260		enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAHW010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759866-rid19603633.denovo.14, whole genome shotgun sequence	63436..63695		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	DAQAHW010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759866-rid19603633.denovo.13, whole genome shotgun sequence	12327..12588		enterobacteriales	IncX1	98.66	374 / 374	DAQAHW010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759866-rid19603633.denovo.14, whole genome shotgun sequence	24683..25056																											avrA	DAQAHW010000002.1	504299..505167	99.655	870	0						
GCA_032385475.1_PDT001914800.1_genomic.fna	Salmonella_enterica	0.5209	405.765 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAHY010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759862-rid19603603.denovo.01, whole genome shotgun sequence	802055..802492	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAHY010000032.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759862-rid19603603.guided.21, whole genome shotgun sequence	4627..5064	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAHY010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759862-rid19603603.denovo.24, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAHY010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759862-rid19603603.denovo.13, whole genome shotgun sequence	63437..63696		enterobacteriales	IncX1	98.66	374 / 374	DAQAHY010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759862-rid19603603.denovo.13, whole genome shotgun sequence	24684..25057																																									avrA	DAQAHY010000002.1	504306..505174	99.655	870	0						
GCA_032385495.1_PDT001914799.1_genomic.fna	Salmonella_enterica	0.521	405.765 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAHZ010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759860-rid19603593.denovo.04, whole genome shotgun sequence	155745..156182	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAHZ010000036.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759860-rid19603593.guided.20, whole genome shotgun sequence	13793..14230	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAHZ010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759860-rid19603593.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAHZ010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759860-rid19603593.denovo.14, whole genome shotgun sequence	63437..63696		enterobacteriales	IncX1	98.66	374 / 374	DAQAHZ010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759860-rid19603593.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAHZ010000001.1	504306..505174	99.655	870	0						
GCA_032385515.1_PDT001914797.1_genomic.fna	Salmonella_enterica	0.5208	405.765 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIA010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759858-rid19603573.denovo.04, whole genome shotgun sequence	155706..156143	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIA010000037.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759858-rid19603573.guided.19, whole genome shotgun sequence	5412..5849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIA010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759858-rid19603573.denovo.27, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIA010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759858-rid19603573.denovo.14, whole genome shotgun sequence	63437..63696		enterobacteriales	IncX1	98.66	374 / 374	DAQAIA010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759858-rid19603573.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAIA010000001.1	504306..505174	99.655	870	0						
GCA_032385535.1_PDT001914785.1_genomic.fna	Salmonella_enterica	0.521	405.765 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIF010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759830-rid19603463.denovo.04, whole genome shotgun sequence	155748..156185	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIF010000040.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759830-rid19603463.guided.23, whole genome shotgun sequence	146..583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIF010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759830-rid19603463.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIF010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759830-rid19603463.denovo.14, whole genome shotgun sequence	63392..63651		enterobacteriales	IncX1	98.66	374 / 374	DAQAIF010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759830-rid19603463.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAIF010000001.1	504581..505449	99.655	870	0						
GCA_032385555.1_PDT001914790.1_genomic.fna	Salmonella_enterica	0.5208	478.284 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIC010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759837-rid19603513.denovo.01, whole genome shotgun sequence	799942..800379	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIC010000031.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759837-rid19603513.guided.19, whole genome shotgun sequence	13162..13599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIC010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759837-rid19603513.denovo.13, whole genome shotgun sequence	63406..63665	enterobacteriales	IncX1	98.66	374 / 374	DAQAIC010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759837-rid19603513.denovo.13, whole genome shotgun sequence	24683..25056																																																avrA	DAQAIC010000002.1	504456..505324	99.655	870	0						
GCA_032385575.1_PDT001914775.1_genomic.fna	Salmonella_enterica	0.5207	402.378 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIK010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759820-rid19603363.denovo.04, whole genome shotgun sequence	155769..156206	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIK010000038.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759820-rid19603363.guided.22, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIK010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759820-rid19603363.denovo.27, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIK010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759820-rid19603363.denovo.15, whole genome shotgun sequence	63428..63687		enterobacteriales	IncX1	98.66	374 / 374	DAQAIK010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759820-rid19603363.denovo.15, whole genome shotgun sequence	24684..25057																																									avrA	DAQAIK010000001.1	504306..505174	99.655	870	0						
GCA_032385595.1_PDT001914776.1_genomic.fna	Salmonella_enterica	0.5205	405.765 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAII010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759821-rid19603373.denovo.04, whole genome shotgun sequence	154968..155405	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAII010000034.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759821-rid19603373.guided.19, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAII010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759821-rid19603373.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAII010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759821-rid19603373.denovo.14, whole genome shotgun sequence	63422..63681		enterobacteriales	IncX1	98.66	374 / 374	DAQAII010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759821-rid19603373.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAII010000001.1	504294..505162	99.655	870	0						
GCA_032385615.1_PDT001914791.1_genomic.fna	Salmonella_enterica	0.5209	412.036 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIB010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759838-rid19603523.denovo.01, whole genome shotgun sequence	802055..802492	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIB010000037.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759838-rid19603523.guided.20, whole genome shotgun sequence	13175..13612	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIB010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759838-rid19603523.denovo.23, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIB010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759838-rid19603523.denovo.13, whole genome shotgun sequence	63437..63696		enterobacteriales	IncX1	98.66	374 / 374	DAQAIB010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759838-rid19603523.denovo.13, whole genome shotgun sequence	24684..25057																																									avrA	DAQAIB010000002.1	504304..505172	99.655	870	0						
GCA_032385635.1_PDT001914789.1_genomic.fna	Salmonella_enterica	0.5207	405.765 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAID010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759834-rid19603503.denovo.04, whole genome shotgun sequence	155751..156188	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAID010000038.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759834-rid19603503.guided.20, whole genome shotgun sequence	11142..11579	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAID010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759834-rid19603503.denovo.27, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAID010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759834-rid19603503.denovo.14, whole genome shotgun sequence	63481..63740		enterobacteriales	IncX1	98.66	374 / 374	DAQAID010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759834-rid19603503.denovo.14, whole genome shotgun sequence	24683..25056																																									avrA	DAQAID010000001.1	504299..505167	99.655	870	0						
GCA_032385655.1_PDT001914788.1_genomic.fna	Salmonella_enterica	0.5209	417.666 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIE010000005.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759833-rid19603493.denovo.05, whole genome shotgun sequence	156125..156562	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIE010000034.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759833-rid19603493.guided.21, whole genome shotgun sequence	13162..13599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIE010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759833-rid19603493.denovo.14, whole genome shotgun sequence	63414..63673	enterobacteriales	IncX1	98.66	374 / 374	DAQAIE010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759833-rid19603493.denovo.14, whole genome shotgun sequence	24683..25056																																																avrA	DAQAIE010000001.1	504451..505319	99.655	870	0						
GCA_032385675.1_PDT001914782.1_genomic.fna	Salmonella_enterica	0.521	362.82 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIG010000011.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759827-rid19603433.denovo.11, whole genome shotgun sequence	39279..39716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIG010000039.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759827-rid19603433.guided.23, whole genome shotgun sequence	10657..11094	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIG010000016.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759827-rid19603433.denovo.16, whole genome shotgun sequence	63400..63659	enterobacteriales	IncX1	98.66	374 / 374	DAQAIG010000016.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759827-rid19603433.denovo.16, whole genome shotgun sequence	24683..25056																																																avrA	DAQAIG010000001.1	504457..505325	99.655	870	0						
GCA_032385695.1_PDT001914781.1_genomic.fna	Salmonella_enterica	0.5208	400.507 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759826-rid19603423.denovo.01, whole genome shotgun sequence	787153..787590	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIJ010000038.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759826-rid19603423.guided.25, whole genome shotgun sequence	3571..4008	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIJ010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759826-rid19603423.denovo.27, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIJ010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759826-rid19603423.denovo.14, whole genome shotgun sequence	63437..63696		enterobacteriales	IncX1	98.66	374 / 374	DAQAIJ010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759826-rid19603423.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAIJ010000002.1	504311..505179	99.655	870	0						
GCA_032385715.1_PDT001914779.1_genomic.fna	Salmonella_enterica	0.5209	327.217 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIH010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759824-rid19603403.denovo.04, whole genome shotgun sequence	90619..91056	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIH010000043.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759824-rid19603403.guided.30, whole genome shotgun sequence	1689..2126	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIH010000029.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759824-rid19603403.denovo.32, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIH010000018.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759824-rid19603403.denovo.18, whole genome shotgun sequence	63418..63677		enterobacteriales	IncX1	98.66	374 / 374	DAQAIH010000018.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759824-rid19603403.denovo.18, whole genome shotgun sequence	24683..25056																																									avrA	DAQAIH010000005.1	173564..174432	99.655	870	0						
GCA_032385735.1_PDT001914771.1_genomic.fna	Salmonella_enterica	0.5203	362.967 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		5	ColRNAI,IncFIB(AP001918),IncFII(S),IncFII(pCoo),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIN010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759816-rid19603323.denovo.01, whole genome shotgun sequence	799509..799946	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIN010000041.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759816-rid19603323.guided.24, whole genome shotgun sequence	13654..14091	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIN010000027.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759816-rid19603323.denovo.30, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFIB(AP001918)	99.27	682 / 682	DAQAIN010000020.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759816-rid19603323.denovo.21, whole genome shotgun sequence	23027..23708		enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIN010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759816-rid19603323.denovo.15, whole genome shotgun sequence	63436..63695		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	DAQAIN010000017.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759816-rid19603323.denovo.17, whole genome shotgun sequence	12327..12588		enterobacteriales	IncX1	98.66	374 / 374	DAQAIN010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759816-rid19603323.denovo.15, whole genome shotgun sequence	24683..25056																											avrA	DAQAIN010000006.1	173564..174432	99.655	870	0						
GCA_032385755.1_PDT001914773.1_genomic.fna	Salmonella_enterica	0.5206	406.75 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIL010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759818-rid19603343.denovo.01, whole genome shotgun sequence	802056..802493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIL010000035.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759818-rid19603343.guided.18, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIL010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759818-rid19603343.denovo.24, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIL010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759818-rid19603343.denovo.13, whole genome shotgun sequence	63437..63696		enterobacteriales	IncX1	98.66	374 / 374	DAQAIL010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759818-rid19603343.denovo.13, whole genome shotgun sequence	24684..25057																																									avrA	DAQAIL010000002.1	504311..505179	99.655	870	0						
GCA_032385775.1_PDT001914772.1_genomic.fna	Salmonella_enterica	0.5206	405.765 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIM010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759817-rid19603333.denovo.01, whole genome shotgun sequence	802056..802493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIM010000036.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759817-rid19603333.guided.19, whole genome shotgun sequence	13522..13959	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIM010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759817-rid19603333.denovo.25, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIM010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759817-rid19603333.denovo.14, whole genome shotgun sequence	63437..63696		enterobacteriales	IncX1	98.66	374 / 374	DAQAIM010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759817-rid19603333.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAIM010000002.1	504311..505179	99.655	870	0						
GCA_032385795.1_PDT001914769.1_genomic.fna	Salmonella_enterica	0.5204	405.765 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:-:-	1	aac(6')-Iaa,aac(6')-Iaa	0		5	ColRNAI,IncFIB(AP001918),IncFII(S),IncFII(pCoo),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	-	-	Salmonella enterica subspecies enterica (subspecies I)	9:-:-	H antigens were not detected. This is an atypical result that should be further investigated. Most Salmonella strains have at least fliC, encoding the Phase 1 H antigen, even if it is not expressed.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIO010000002.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759813-rid19603303.denovo.02, whole genome shotgun sequence	281738..282175	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIO010000044.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759813-rid19603303.guided.24, whole genome shotgun sequence	11143..11580	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIO010000027.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759813-rid19603303.denovo.30, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFIB(AP001918)	99.27	682 / 682	DAQAIO010000019.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759813-rid19603303.denovo.20, whole genome shotgun sequence	22743..23424		enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIO010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759813-rid19603303.denovo.14, whole genome shotgun sequence	63427..63686		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	DAQAIO010000016.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759813-rid19603303.denovo.16, whole genome shotgun sequence	12841..13102		enterobacteriales	IncX1	98.66	374 / 374	DAQAIO010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759813-rid19603303.denovo.14, whole genome shotgun sequence	24683..25056																											avrA	DAQAIO010000001.1	504281..505149	99.655	870	0						
GCA_032385815.1_PDT001914770.1_genomic.fna	Salmonella_enterica	0.5206	400.446 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		5	ColRNAI,IncFIB(AP001918),IncFII(S),IncFII(pCoo),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIP010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759814-rid19603313.denovo.01, whole genome shotgun sequence	799235..799672	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIP010000041.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759814-rid19603313.guided.28, whole genome shotgun sequence	1780..2217	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIP010000026.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759814-rid19603313.denovo.29, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFIB(AP001918)	99.27	682 / 682	DAQAIP010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759814-rid19603313.denovo.21, whole genome shotgun sequence	22749..23430		enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIP010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759814-rid19603313.denovo.14, whole genome shotgun sequence	63400..63659		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	DAQAIP010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759814-rid19603313.denovo.15, whole genome shotgun sequence	12328..12589		enterobacteriales	IncX1	98.66	374 / 374	DAQAIP010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759814-rid19603313.denovo.14, whole genome shotgun sequence	24683..25056																											avrA	DAQAIP010000007.1	173576..174444	99.655	870	0						
GCA_032385835.1_PDT001914768.1_genomic.fna	Salmonella_enterica	0.5209	402.366 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,tet(A),tet(A)	0		4	ColRNAI,IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIS010000002.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.denovo.02, whole genome shotgun sequence	278516..278953	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAIS010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.denovo.22, whole genome shotgun sequence	10615..11451	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	DAQAIS010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.denovo.22, whole genome shotgun sequence	11451..12253	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	DAQAIS010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.denovo.22, whole genome shotgun sequence	11451..12254	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	DAQAIS010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.denovo.22, whole genome shotgun sequence	11451..12254	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	DAQAIS010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.denovo.22, whole genome shotgun sequence	11451..12254	Streptomycin	AF321550	aac(6')-Iaa	98.63	438/438	DAQAIS010000044.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.guided.23, whole genome shotgun sequence	13707..14144	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAIS010000045.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.guided.25, whole genome shotgun sequence	6511..7347	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	DAQAIS010000045.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.guided.25, whole genome shotgun sequence	5709..6511	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	DAQAIS010000045.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.guided.25, whole genome shotgun sequence	5708..6511	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	DAQAIS010000045.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.guided.25, whole genome shotgun sequence	5708..6511	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	DAQAIS010000045.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.guided.25, whole genome shotgun sequence	5708..6511	Streptomycin	AF321550	blaTEM-1B	100	861/861	DAQAIS010000027.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.denovo.31, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAIS010000047.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.guided.30, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	DAQAIS010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.denovo.22, whole genome shotgun sequence	15941..17140	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQAIS010000045.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.guided.25, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIS010000029.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.denovo.34, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIS010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.denovo.15, whole genome shotgun sequence	66025..66284		enterobacteriales	IncN	100	514 / 514	DAQAIS010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.denovo.27, whole genome shotgun sequence	748..1261		enterobacteriales	IncX1	98.66	374 / 374	DAQAIS010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759812-rid19603293.denovo.15, whole genome shotgun sequence	27290..27663																																		avrA	DAQAIS010000001.1	504282..505150	99.655	870	0						
GCA_032385855.1_PDT001914766.1_genomic.fna	Salmonella_enterica	0.5208	402.366 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,tet(A),tet(A)	0		4	ColRNAI,IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIR010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.denovo.04, whole genome shotgun sequence	155747..156184	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAIR010000025.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.denovo.26, whole genome shotgun sequence	10573..11409	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	DAQAIR010000025.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.denovo.26, whole genome shotgun sequence	11409..12211	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	DAQAIR010000025.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.denovo.26, whole genome shotgun sequence	11409..12212	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	DAQAIR010000025.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.denovo.26, whole genome shotgun sequence	11409..12212	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	DAQAIR010000025.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.denovo.26, whole genome shotgun sequence	11409..12212	Streptomycin	AF321550	aac(6')-Iaa	98.63	438/438	DAQAIR010000045.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.guided.22, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAIR010000046.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.guided.27, whole genome shotgun sequence	6511..7347	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	DAQAIR010000046.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.guided.27, whole genome shotgun sequence	5709..6511	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	DAQAIR010000046.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.guided.27, whole genome shotgun sequence	5708..6511	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	DAQAIR010000046.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.guided.27, whole genome shotgun sequence	5708..6511	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	DAQAIR010000046.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.guided.27, whole genome shotgun sequence	5708..6511	Streptomycin	AF321550	blaTEM-1B	100	861/861	DAQAIR010000028.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.denovo.32, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAIR010000048.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.guided.31, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	DAQAIR010000025.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.denovo.26, whole genome shotgun sequence	15899..17098	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQAIR010000046.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.guided.27, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIR010000030.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.denovo.34, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIR010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.denovo.15, whole genome shotgun sequence	66025..66284		enterobacteriales	IncN	100	514 / 514	DAQAIR010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.denovo.25, whole genome shotgun sequence	18664..19177		enterobacteriales	IncX1	98.66	374 / 374	DAQAIR010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759809-rid19603273.denovo.15, whole genome shotgun sequence	27290..27663																																		avrA	DAQAIR010000001.1	504288..505156	99.655	870	0						
GCA_032385875.1_PDT001914767.1_genomic.fna	Salmonella_enterica	0.5209	405.765 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,tet(A),tet(A)	0		4	ColRNAI,IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIQ010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.denovo.04, whole genome shotgun sequence	152516..152953	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAIQ010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.denovo.21, whole genome shotgun sequence	10660..11496	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	DAQAIQ010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.denovo.21, whole genome shotgun sequence	11496..12298	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	DAQAIQ010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.denovo.21, whole genome shotgun sequence	11496..12299	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	DAQAIQ010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.denovo.21, whole genome shotgun sequence	11496..12299	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	DAQAIQ010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.denovo.21, whole genome shotgun sequence	11496..12299	Streptomycin	AF321550	aph(6)-Id	100	837/837	DAQAIQ010000044.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.guided.23, whole genome shotgun sequence	6511..7347	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	DAQAIQ010000044.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.guided.23, whole genome shotgun sequence	5709..6511	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	DAQAIQ010000044.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.guided.23, whole genome shotgun sequence	5708..6511	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	DAQAIQ010000044.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.guided.23, whole genome shotgun sequence	5708..6511	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	DAQAIQ010000044.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.guided.23, whole genome shotgun sequence	5708..6511	Streptomycin	AF321550	aac(6')-Iaa	98.63	438/438	DAQAIQ010000048.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.guided.34, whole genome shotgun sequence	729..1166	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQAIQ010000026.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.denovo.30, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAIQ010000047.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.guided.29, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	DAQAIQ010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.denovo.21, whole genome shotgun sequence	15986..17185	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQAIQ010000044.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.guided.23, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIQ010000028.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.denovo.32, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIQ010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.denovo.15, whole genome shotgun sequence	66025..66284		enterobacteriales	IncN	100	514 / 514	DAQAIQ010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.denovo.26, whole genome shotgun sequence	748..1261		enterobacteriales	IncX1	98.66	374 / 374	DAQAIQ010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759811-rid19603283.denovo.15, whole genome shotgun sequence	27290..27663																																		avrA	DAQAIQ010000001.1	504282..505150	99.655	870	0						
GCA_032385895.1_PDT001914765.1_genomic.fna	Salmonella_enterica	0.5209	405.765 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,tet(A),tet(A)	0		4	ColRNAI,IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIT010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.denovo.04, whole genome shotgun sequence	155755..156192	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAIT010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.denovo.22, whole genome shotgun sequence	10658..11494	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	DAQAIT010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.denovo.22, whole genome shotgun sequence	11494..12296	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	DAQAIT010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.denovo.22, whole genome shotgun sequence	11494..12297	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	DAQAIT010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.denovo.22, whole genome shotgun sequence	11494..12297	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	DAQAIT010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.denovo.22, whole genome shotgun sequence	11494..12297	Streptomycin	AF321550	aac(6')-Iaa	98.63	438/438	DAQAIT010000044.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.guided.21, whole genome shotgun sequence	11175..11612	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAIT010000046.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.guided.25, whole genome shotgun sequence	6511..7347	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	DAQAIT010000046.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.guided.25, whole genome shotgun sequence	5709..6511	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	DAQAIT010000046.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.guided.25, whole genome shotgun sequence	5708..6511	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	DAQAIT010000046.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.guided.25, whole genome shotgun sequence	5708..6511	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	DAQAIT010000046.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.guided.25, whole genome shotgun sequence	5708..6511	Streptomycin	AF321550	blaTEM-1B	100	861/861	DAQAIT010000026.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.denovo.31, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAIT010000048.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.guided.30, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	DAQAIT010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.denovo.22, whole genome shotgun sequence	15984..17183	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQAIT010000046.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.guided.25, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIT010000028.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.denovo.33, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIT010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.denovo.15, whole genome shotgun sequence	66025..66284		enterobacteriales	IncN	100	514 / 514	DAQAIT010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.denovo.27, whole genome shotgun sequence	1082..1595		enterobacteriales	IncX1	98.66	374 / 374	DAQAIT010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759807-rid19603263.denovo.15, whole genome shotgun sequence	27290..27663																																		avrA	DAQAIT010000001.1	504288..505156	99.655	870	0						
GCA_032385935.1_PDT001914761.1_genomic.fna	Salmonella_enterica	0.5207	421.397 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIV010000005.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759800-rid19603233.denovo.05, whole genome shotgun sequence	160300..160737	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIV010000033.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759800-rid19603233.guided.19, whole genome shotgun sequence	15933..16370	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIV010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759800-rid19603233.denovo.14, whole genome shotgun sequence	63370..63629	enterobacteriales	IncX1	98.66	374 / 374	DAQAIV010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759800-rid19603233.denovo.14, whole genome shotgun sequence	24675..25048																																																avrA	DAQAIV010000001.1	504244..505112	99.655	870	0						
GCA_032385955.1_PDT001914760.1_genomic.fna	Salmonella_enterica	0.5207	405.765 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIW010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759798-rid19603223.denovo.04, whole genome shotgun sequence	155644..156081	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIW010000037.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759798-rid19603223.guided.22, whole genome shotgun sequence	13083..13520	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIW010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759798-rid19603223.denovo.27, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIW010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759798-rid19603223.denovo.15, whole genome shotgun sequence	63446..63705		enterobacteriales	IncX1	98.66	374 / 374	DAQAIW010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759798-rid19603223.denovo.15, whole genome shotgun sequence	24684..25057																																									avrA	DAQAIW010000001.1	504298..505166	99.655	870	0						
GCA_032385975.1_PDT001914762.1_genomic.fna	Salmonella_enterica	0.5204	421.519 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIU010000005.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759801-rid19603243.denovo.05, whole genome shotgun sequence	160422..160859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIU010000033.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759801-rid19603243.guided.13, whole genome shotgun sequence	15933..16370	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIU010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759801-rid19603243.denovo.16, whole genome shotgun sequence	63370..63629	enterobacteriales	IncX1	98.66	374 / 374	DAQAIU010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759801-rid19603243.denovo.16, whole genome shotgun sequence	24675..25048																																																avrA	DAQAIU010000001.1	504244..505112	99.655	870	0						
GCA_032385995.1_PDT001914759.1_genomic.fna	Salmonella_enterica	0.5206	411.802 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIX010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759797-rid19603213.denovo.04, whole genome shotgun sequence	155638..156075	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIX010000034.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759797-rid19603213.guided.21, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIX010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759797-rid19603213.denovo.25, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIX010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759797-rid19603213.denovo.14, whole genome shotgun sequence	63446..63705		enterobacteriales	IncX1	98.66	374 / 374	DAQAIX010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759797-rid19603213.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAIX010000001.1	504563..505431	99.655	870	0						
GCA_032386015.1_PDT001914754.1_genomic.fna	Salmonella_enterica	0.5204	402.365 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		5	ColRNAI,IncFIB(AP001918),IncFII(S),IncFII(pCoo),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIZ010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759765-rid19603163.denovo.04, whole genome shotgun sequence	155749..156186	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIZ010000044.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759765-rid19603163.guided.34, whole genome shotgun sequence	814..1251	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIZ010000030.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759765-rid19603163.denovo.32, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFIB(AP001918)	99.27	682 / 682	DAQAIZ010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759765-rid19603163.denovo.22, whole genome shotgun sequence	23027..23708		enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIZ010000016.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759765-rid19603163.denovo.16, whole genome shotgun sequence	63427..63686		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	DAQAIZ010000019.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759765-rid19603163.denovo.19, whole genome shotgun sequence	12327..12588		enterobacteriales	IncX1	98.66	374 / 374	DAQAIZ010000016.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759765-rid19603163.denovo.16, whole genome shotgun sequence	24683..25056																											avrA	DAQAIZ010000001.1	504305..505173	99.655	870	0						
GCA_032386035.1_PDT001914751.1_genomic.fna	Salmonella_enterica	0.5209	402.365 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJA010000003.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759762-rid19603133.denovo.03, whole genome shotgun sequence	154217..154654	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJA010000041.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759762-rid19603133.guided.28, whole genome shotgun sequence	3016..3453	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJA010000025.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759762-rid19603133.denovo.27, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJA010000016.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759762-rid19603133.denovo.16, whole genome shotgun sequence	63436..63695		enterobacteriales	IncX1	98.66	374 / 374	DAQAJA010000016.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759762-rid19603133.denovo.16, whole genome shotgun sequence	24683..25056																																									avrA	DAQAJA010000001.1	504293..505161	99.655	870	0						
GCA_032386055.1_PDT001914756.1_genomic.fna	Salmonella_enterica	0.5209	363.104 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAIY010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759767-rid19603183.denovo.04, whole genome shotgun sequence	148103..148540	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAIY010000040.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759767-rid19603183.guided.31, whole genome shotgun sequence	636..1073	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAIY010000029.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759767-rid19603183.denovo.30, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAIY010000018.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759767-rid19603183.denovo.18, whole genome shotgun sequence	63436..63695		enterobacteriales	IncX1	98.66	374 / 374	DAQAIY010000018.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759767-rid19603183.denovo.18, whole genome shotgun sequence	24683..25056																																									avrA	DAQAIY010000001.1	504317..505185	99.655	870	0						
GCA_032386075.1_PDT001914750.1_genomic.fna	Salmonella_enterica	0.5209	374.958 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJB010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759761-rid19603123.denovo.01, whole genome shotgun sequence	802048..802485	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJB010000037.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759761-rid19603123.guided.22, whole genome shotgun sequence	5475..5912	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJB010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759761-rid19603123.denovo.27, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJB010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759761-rid19603123.denovo.14, whole genome shotgun sequence	63428..63687		enterobacteriales	IncX1	98.66	374 / 374	DAQAJB010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759761-rid19603123.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJB010000007.1	173652..174520	99.655	870	0						
GCA_032386095.1_PDT001914748.1_genomic.fna	Salmonella_enterica	0.5209	405.699 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJC010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759758-rid19603103.denovo.01, whole genome shotgun sequence	802056..802493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJC010000035.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759758-rid19603103.guided.20, whole genome shotgun sequence	7506..7943	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJC010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759758-rid19603103.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJC010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759758-rid19603103.denovo.13, whole genome shotgun sequence	63425..63684		enterobacteriales	IncX1	98.66	374 / 374	DAQAJC010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759758-rid19603103.denovo.13, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJC010000002.1	504304..505172	99.655	870	0						
GCA_032386115.1_PDT001914747.1_genomic.fna	Salmonella_enterica	0.5209	405.382 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJD010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759757-rid19603093.denovo.01, whole genome shotgun sequence	802055..802492	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJD010000034.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759757-rid19603093.guided.22, whole genome shotgun sequence	2234..2671	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJD010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759757-rid19603093.denovo.27, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJD010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759757-rid19603093.denovo.14, whole genome shotgun sequence	63425..63684		enterobacteriales	IncX1	98.66	374 / 374	DAQAJD010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759757-rid19603093.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJD010000002.1	504304..505172	99.655	870	0						
GCA_032386135.1_PDT001914741.1_genomic.fna	Salmonella_enterica	0.5209	362.967 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJF010000008.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759749-rid19603033.denovo.08, whole genome shotgun sequence	98869..99306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJF010000035.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759749-rid19603033.guided.28, whole genome shotgun sequence	166..603	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJF010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759749-rid19603033.denovo.24, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJF010000016.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759749-rid19603033.denovo.16, whole genome shotgun sequence	63425..63684		enterobacteriales	IncX1	98.66	374 / 374	DAQAJF010000016.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759749-rid19603033.denovo.16, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJF010000006.1	173652..174520	99.655	870	0						
GCA_032386155.1_PDT001914744.1_genomic.fna	Salmonella_enterica	0.5209	405.6 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJH010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759753-rid19603063.denovo.01, whole genome shotgun sequence	802054..802491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJH010000037.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759753-rid19603063.guided.24, whole genome shotgun sequence	2621..3058	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJH010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759753-rid19603063.denovo.23, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJH010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759753-rid19603063.denovo.13, whole genome shotgun sequence	63425..63684		enterobacteriales	IncX1	98.66	374 / 374	DAQAJH010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759753-rid19603063.denovo.13, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJH010000002.1	504303..505171	99.655	870	0						
GCA_032386175.1_PDT001914740.1_genomic.fna	Salmonella_enterica	0.5208	402.378 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJI010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759747-rid19603023.denovo.04, whole genome shotgun sequence	155754..156191	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJI010000040.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759747-rid19603023.guided.25, whole genome shotgun sequence	9966..10403	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJI010000027.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759747-rid19603023.denovo.30, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJI010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759747-rid19603023.denovo.14, whole genome shotgun sequence	63437..63696		enterobacteriales	IncX1	98.66	374 / 374	DAQAJI010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759747-rid19603023.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJI010000001.1	504311..505179	99.655	870	0						
GCA_032386195.1_PDT001914739.1_genomic.fna	Salmonella_enterica	0.521	262.265 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJG010000002.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759746-rid19603013.denovo.02, whole genome shotgun sequence	155747..156184	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJG010000051.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759746-rid19603013.guided.37, whole genome shotgun sequence	3139..3576	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJG010000040.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759746-rid19603013.denovo.42, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJG010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759746-rid19603013.denovo.21, whole genome shotgun sequence	63437..63696		enterobacteriales	IncX1	98.66	374 / 374	DAQAJG010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759746-rid19603013.denovo.21, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJG010000007.1	173652..174520	99.655	870	0						
GCA_032386215.1_PDT001914734.1_genomic.fna	Salmonella_enterica	0.5201	405.765 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		5	ColRNAI,IncFIB(AP001918),IncFII(S),IncFII(pCoo),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJK010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759735-rid19602973.denovo.01, whole genome shotgun sequence	802056..802493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJK010000036.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759735-rid19602973.guided.18, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJK010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759735-rid19602973.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFIB(AP001918)	99.27	682 / 682	DAQAJK010000011.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759735-rid19602973.denovo.11, whole genome shotgun sequence	80594..81275		enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJK010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759735-rid19602973.denovo.14, whole genome shotgun sequence	63427..63686		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	DAQAJK010000011.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759735-rid19602973.denovo.11, whole genome shotgun sequence	12342..12603		enterobacteriales	IncX1	98.66	374 / 374	DAQAJK010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759735-rid19602973.denovo.14, whole genome shotgun sequence	24683..25056																											avrA	DAQAJK010000002.1	504295..505163	99.655	870	0						
GCA_032386235.1_PDT001914731.1_genomic.fna	Salmonella_enterica	0.5204	405.765 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJL010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759688-rid19602943.denovo.04, whole genome shotgun sequence	155756..156193	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJL010000038.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759688-rid19602943.guided.12, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJL010000025.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759688-rid19602943.denovo.28, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJL010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759688-rid19602943.denovo.16, whole genome shotgun sequence	63419..63678		enterobacteriales	IncX1	98.66	374 / 374	DAQAJL010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759688-rid19602943.denovo.16, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJL010000001.1	504306..505174	99.655	870	0						
GCA_032386255.1_PDT001914728.1_genomic.fna	Salmonella_enterica	0.5203	405.765 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJN010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759684-rid19602913.denovo.04, whole genome shotgun sequence	155757..156194	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJN010000036.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759684-rid19602913.guided.13, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJN010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759684-rid19602913.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJN010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759684-rid19602913.denovo.16, whole genome shotgun sequence	63437..63696		enterobacteriales	IncX1	98.66	374 / 374	DAQAJN010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759684-rid19602913.denovo.16, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJN010000001.1	504305..505173	99.655	870	0						
GCA_032386275.1_PDT001914726.1_genomic.fna	Salmonella_enterica	0.5209	417.047 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJQ010000005.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759682-rid19602893.denovo.05, whole genome shotgun sequence	155753..156190	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJQ010000034.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759682-rid19602893.guided.19, whole genome shotgun sequence	15075..15512	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJQ010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759682-rid19602893.denovo.25, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJQ010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759682-rid19602893.denovo.14, whole genome shotgun sequence	63401..63660		enterobacteriales	IncX1	98.66	374 / 374	DAQAJQ010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759682-rid19602893.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJQ010000001.1	504305..505173	99.655	870	0						
GCA_032386335.1_PDT001914738.1_genomic.fna	Salmonella_enterica	0.5209	400.759 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJJ010000008.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759744-rid19603003.denovo.08, whole genome shotgun sequence	117335..117772	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJJ010000037.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759744-rid19603003.guided.25, whole genome shotgun sequence	7008..7445	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJJ010000028.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759744-rid19603003.denovo.30, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJJ010000016.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759744-rid19603003.denovo.16, whole genome shotgun sequence	63437..63696		enterobacteriales	IncX1	98.66	374 / 374	DAQAJJ010000016.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759744-rid19603003.denovo.16, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJJ010000001.1	504311..505179	99.655	870	0						
GCA_032386345.1_PDT001914729.1_genomic.fna	Salmonella_enterica	0.5203	180.935 KB	10	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		5	ColRNAI,IncFIB(AP001918),IncFII(S),IncFII(pCoo),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJM010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759686-rid19602923.denovo.04, whole genome shotgun sequence	20681..21118	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.77	406/438	DAQAJM010000068.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759686-rid19602923.guided.58, whole genome shotgun sequence	1..406	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJM010000051.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759686-rid19602923.denovo.51, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFIB(AP001918)	99.27	682 / 682	DAQAJM010000034.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759686-rid19602923.denovo.34, whole genome shotgun sequence	22749..23430		enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJM010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759686-rid19602923.denovo.21, whole genome shotgun sequence	63418..63677		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	DAQAJM010000027.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759686-rid19602923.denovo.27, whole genome shotgun sequence	12276..12537		enterobacteriales	IncX1	98.66	374 / 374	DAQAJM010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759686-rid19602923.denovo.21, whole genome shotgun sequence	24683..25056																											avrA	DAQAJM010000005.1	173545..174413	99.655	870	0						
GCA_032386375.1_PDT001914786.1_genomic.fna	Salmonella_enterica	0.5209	402.385 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJO010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759831-rid19603473.denovo.01, whole genome shotgun sequence	800182..800619	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJO010000034.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759831-rid19603473.guided.23, whole genome shotgun sequence	2884..3321	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJO010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759831-rid19603473.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJO010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759831-rid19603473.denovo.14, whole genome shotgun sequence	63419..63678		enterobacteriales	IncX1	98.66	374 / 374	DAQAJO010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759831-rid19603473.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJO010000002.1	504574..505442	99.655	870	0						
GCA_032386395.1_PDT001914787.1_genomic.fna	Salmonella_enterica	0.5209	405.765 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJP010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759832-rid19603483.denovo.04, whole genome shotgun sequence	148166..148603	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJP010000042.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759832-rid19603483.guided.24, whole genome shotgun sequence	3628..4065	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJP010000025.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759832-rid19603483.denovo.28, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJP010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759832-rid19603483.denovo.16, whole genome shotgun sequence	63419..63678		enterobacteriales	IncX1	98.66	374 / 374	DAQAJP010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759832-rid19603483.denovo.16, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJP010000001.1	504304..505172	99.655	870	0						
GCA_032386415.1_PDT001914746.1_genomic.fna	Salmonella_enterica	0.5209	400.769 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJE010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759756-rid19603083.denovo.01, whole genome shotgun sequence	802055..802492	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJE010000033.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759756-rid19603083.guided.20, whole genome shotgun sequence	7416..7853	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJE010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759756-rid19603083.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJE010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759756-rid19603083.denovo.14, whole genome shotgun sequence	63425..63684		enterobacteriales	IncX1	98.66	374 / 374	DAQAJE010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759756-rid19603083.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJE010000002.1	504304..505172	99.655	870	0						
GCA_032386435.1_PDT001914784.1_genomic.fna	Salmonella_enterica	0.5208	302.955 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJR010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759829-rid19603453.denovo.01, whole genome shotgun sequence	751713..752150	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJR010000051.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759829-rid19603453.guided.28, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJR010000031.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759829-rid19603453.denovo.34, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJR010000017.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759829-rid19603453.denovo.17, whole genome shotgun sequence	63392..63651		enterobacteriales	IncX1	98.66	374 / 374	DAQAJR010000017.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759829-rid19603453.denovo.17, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJR010000004.1	173652..174520	99.655	870	0						
GCA_032386455.1_PDT001914778.1_genomic.fna	Salmonella_enterica	0.5205	407.031 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJT010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759823-rid19603393.denovo.04, whole genome shotgun sequence	155749..156186	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJT010000034.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759823-rid19603393.guided.12, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJT010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759823-rid19603393.denovo.25, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJT010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759823-rid19603393.denovo.15, whole genome shotgun sequence	63436..63695		enterobacteriales	IncX1	98.66	374 / 374	DAQAJT010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759823-rid19603393.denovo.15, whole genome shotgun sequence	24683..25056																																									avrA	DAQAJT010000001.1	504311..505179	99.655	870	0						
GCA_032386475.1_PDT001914783.1_genomic.fna	Salmonella_enterica	0.5207	416.463 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,tet(A),tet(A)	0		4	ColRNAI,IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJS010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.denovo.04, whole genome shotgun sequence	155755..156192	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAJS010000019.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.denovo.19, whole genome shotgun sequence	10724..11560	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	DAQAJS010000019.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.denovo.19, whole genome shotgun sequence	11560..12362	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	DAQAJS010000019.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.denovo.19, whole genome shotgun sequence	11560..12363	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	DAQAJS010000019.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.denovo.19, whole genome shotgun sequence	11560..12363	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	DAQAJS010000019.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.denovo.19, whole genome shotgun sequence	11560..12363	Streptomycin	AF321550	aph(6)-Id	100	837/837	DAQAJS010000041.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.guided.20, whole genome shotgun sequence	28663..29499	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	DAQAJS010000041.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.guided.20, whole genome shotgun sequence	27861..28663	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	DAQAJS010000041.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.guided.20, whole genome shotgun sequence	27860..28663	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	DAQAJS010000041.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.guided.20, whole genome shotgun sequence	27860..28663	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	DAQAJS010000041.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.guided.20, whole genome shotgun sequence	27860..28663	Streptomycin	AF321550	aac(6')-Iaa	98.63	438/438	DAQAJS010000042.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.guided.24, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQAJS010000019.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.denovo.19, whole genome shotgun sequence	18178..19038	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAJS010000041.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.guided.20, whole genome shotgun sequence	21185..22045	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	DAQAJS010000019.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.denovo.19, whole genome shotgun sequence	16050..17249	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQAJS010000041.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.guided.20, whole genome shotgun sequence	22974..24173	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJS010000026.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.denovo.30, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJS010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.denovo.14, whole genome shotgun sequence	63418..63677		enterobacteriales	IncN	100	514 / 514	DAQAJS010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.denovo.27, whole genome shotgun sequence	859..1372		enterobacteriales	IncX1	98.66	374 / 374	DAQAJS010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759828-rid19603443.denovo.14, whole genome shotgun sequence	24683..25056																																		avrA	DAQAJS010000008.1	148248..149116	99.655	870	0						
GCA_032386495.1_PDT001914758.1_genomic.fna	Salmonella_enterica	0.5209	367.886 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJX010000007.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759791-rid19603203.denovo.07, whole genome shotgun sequence	106610..107047	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJX010000040.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759791-rid19603203.guided.27, whole genome shotgun sequence	67..504	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJX010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759791-rid19603203.denovo.15, whole genome shotgun sequence	63400..63659	enterobacteriales	IncX1	98.66	374 / 374	DAQAJX010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759791-rid19603203.denovo.15, whole genome shotgun sequence	24683..25056																																																avrA	DAQAJX010000001.1	504458..505326	99.655	870	0						
GCA_032386515.1_PDT001914777.1_genomic.fna	Salmonella_enterica	0.521	402.385 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJU010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759822-rid19603383.denovo.04, whole genome shotgun sequence	155747..156184	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJU010000037.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759822-rid19603383.guided.23, whole genome shotgun sequence	2051..2488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJU010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759822-rid19603383.denovo.27, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJU010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759822-rid19603383.denovo.14, whole genome shotgun sequence	63428..63687		enterobacteriales	IncX1	98.66	374 / 374	DAQAJU010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759822-rid19603383.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJU010000001.1	504304..505172	99.655	870	0						
GCA_032386535.1_PDT001914757.1_genomic.fna	Salmonella_enterica	0.5208	405.765 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJW010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759789-rid19603193.denovo.04, whole genome shotgun sequence	155688..156125	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJW010000035.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759789-rid19603193.guided.20, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJW010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759789-rid19603193.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJW010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759789-rid19603193.denovo.14, whole genome shotgun sequence	63437..63696		enterobacteriales	IncX1	98.66	374 / 374	DAQAJW010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759789-rid19603193.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAJW010000001.1	504305..505173	99.655	870	0						
GCA_032386555.1_PDT001914763.1_genomic.fna	Salmonella_enterica	0.5208	476.669 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJV010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759802-rid19603253.denovo.01, whole genome shotgun sequence	804411..804848	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJV010000031.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759802-rid19603253.guided.19, whole genome shotgun sequence	15933..16370	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJV010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759802-rid19603253.denovo.13, whole genome shotgun sequence	63370..63629	enterobacteriales	IncX1	98.66	374 / 374	DAQAJV010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759802-rid19603253.denovo.13, whole genome shotgun sequence	24675..25048																																																avrA	DAQAJV010000002.1	504244..505112	99.655	870	0						
GCA_032386575.1_PDT001914736.1_genomic.fna	Salmonella_enterica	0.5205	495.23 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJY010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759739-rid19602993.denovo.01, whole genome shotgun sequence	800083..800520	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAJY010000028.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759739-rid19602993.guided.10, whole genome shotgun sequence	15933..16370	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJY010000012.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759739-rid19602993.denovo.13, whole genome shotgun sequence	63388..63647	enterobacteriales	IncX1	98.66	374 / 374	DAQAJY010000012.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759739-rid19602993.denovo.13, whole genome shotgun sequence	24675..25048																																																avrA	DAQAJY010000002.1	504268..505136	99.655	870	0						
GCA_032386595.1_PDT001914732.1_genomic.fna	Salmonella_enterica	0.521	458.48 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,tet(A),tet(A)	0		4	ColRNAI,IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAJZ010000006.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.denovo.06, whole genome shotgun sequence	155751..156188	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAJZ010000018.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.denovo.18, whole genome shotgun sequence	19206..20042	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	DAQAJZ010000018.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.denovo.18, whole genome shotgun sequence	20042..20844	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	DAQAJZ010000018.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.denovo.18, whole genome shotgun sequence	20042..20845	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	DAQAJZ010000018.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.denovo.18, whole genome shotgun sequence	20042..20845	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	DAQAJZ010000018.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.denovo.18, whole genome shotgun sequence	20042..20845	Streptomycin	AF321550	aph(6)-Id	100	837/837	DAQAJZ010000036.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.guided.21, whole genome shotgun sequence	5172..6008	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	DAQAJZ010000036.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.guided.21, whole genome shotgun sequence	4370..5172	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	DAQAJZ010000036.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.guided.21, whole genome shotgun sequence	4369..5172	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	DAQAJZ010000036.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.guided.21, whole genome shotgun sequence	4369..5172	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	DAQAJZ010000036.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.guided.21, whole genome shotgun sequence	4369..5172	Streptomycin	AF321550	aac(6')-Iaa	98.63	438/438	DAQAJZ010000037.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.guided.22, whole genome shotgun sequence	9161..9598	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQAJZ010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.denovo.28, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAJZ010000041.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.guided.27, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	DAQAJZ010000018.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.denovo.18, whole genome shotgun sequence	24532..25731	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQAJZ010000039.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.guided.24, whole genome shotgun sequence	821..2020	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	ColRNAI	90.08	131 / 130	DAQAJZ010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.denovo.30, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAJZ010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.denovo.13, whole genome shotgun sequence	66025..66284		enterobacteriales	IncN	100	514 / 514	DAQAJZ010000018.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.denovo.18, whole genome shotgun sequence	899..1412		enterobacteriales	IncX1	98.66	374 / 374	DAQAJZ010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759692-rid19602953.denovo.13, whole genome shotgun sequence	27290..27663																																		avrA	DAQAJZ010000001.1	504282..505150	99.655	870	0						
GCA_032386615.1_PDT001914727.1_genomic.fna	Salmonella_enterica	0.52	402.395 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		5	ColRNAI,IncFIB(AP001918),IncFII(S),IncFII(pCoo),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAKA010000003.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759683-rid19602903.denovo.03, whole genome shotgun sequence	155741..156178	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAKA010000043.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759683-rid19602903.guided.22, whole genome shotgun sequence	1892..2329	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAKA010000028.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759683-rid19602903.denovo.31, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFIB(AP001918)	99.27	682 / 682	DAQAKA010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759683-rid19602903.denovo.23, whole genome shotgun sequence	22763..23444		enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAKA010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759683-rid19602903.denovo.15, whole genome shotgun sequence	63428..63687		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	DAQAKA010000017.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759683-rid19602903.denovo.18, whole genome shotgun sequence	12327..12588		enterobacteriales	IncX1	98.66	374 / 374	DAQAKA010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759683-rid19602903.denovo.15, whole genome shotgun sequence	24684..25057																											avrA	DAQAKA010000001.1	504305..505173	99.655	870	0						
GCA_032386635.1_PDT001914725.1_genomic.fna	Salmonella_enterica	0.521	264.018 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAKB010000003.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759681-rid19602883.denovo.03, whole genome shotgun sequence	245977..246414	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAKB010000045.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759681-rid19602883.guided.32, whole genome shotgun sequence	7417..7854	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAKB010000033.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759681-rid19602883.denovo.36, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAKB010000018.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759681-rid19602883.denovo.18, whole genome shotgun sequence	63401..63660		enterobacteriales	IncX1	98.66	374 / 374	DAQAKB010000018.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759681-rid19602883.denovo.18, whole genome shotgun sequence	24684..25057																																									avrA	DAQAKB010000001.1	173652..174520	99.655	870	0						
GCA_032386655.1_PDT001914724.1_genomic.fna	Salmonella_enterica	0.521	362.967 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAKC010000007.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759680-rid19602873.denovo.07, whole genome shotgun sequence	139047..139484	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAKC010000040.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759680-rid19602873.guided.31, whole genome shotgun sequence	3454..3891	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAKC010000029.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759680-rid19602873.denovo.32, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAKC010000017.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759680-rid19602873.denovo.17, whole genome shotgun sequence	63401..63660		enterobacteriales	IncX1	98.66	374 / 374	DAQAKC010000017.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759680-rid19602873.denovo.17, whole genome shotgun sequence	24684..25057																																									avrA	DAQAKC010000001.1	505205..506073	99.655	870	0						
GCA_032386675.1_PDT001914723.1_genomic.fna	Salmonella_enterica	0.521	478.287 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAKD010000006.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759679-rid19602863.denovo.06, whole genome shotgun sequence	159029..159466	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAKD010000027.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759679-rid19602863.guided.20, whole genome shotgun sequence	9268..9705	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAKD010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759679-rid19602863.denovo.13, whole genome shotgun sequence	63406..63665	enterobacteriales	IncX1	98.66	374 / 374	DAQAKD010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759679-rid19602863.denovo.13, whole genome shotgun sequence	24683..25056																																																avrA	DAQAKD010000001.1	504157..505025	99.655	870	0						
GCA_032386695.1_PDT001914722.1_genomic.fna	Salmonella_enterica	0.5204	478.287 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAKE010000006.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759678-rid19602853.denovo.06, whole genome shotgun sequence	159035..159472	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAKE010000027.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759678-rid19602853.guided.11, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAKE010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759678-rid19602853.denovo.14, whole genome shotgun sequence	63406..63665	enterobacteriales	IncX1	98.66	374 / 374	DAQAKE010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759678-rid19602853.denovo.14, whole genome shotgun sequence	24683..25056																																																avrA	DAQAKE010000001.1	504157..505025	99.655	870	0						
GCA_032386735.1_PDT001914704.1_genomic.fna	Salmonella_enterica	0.5203	441.795 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJZF010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310146 SAMN37668599-rid19601583.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJZF010000032.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310146 SAMN37668599-rid19601583.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJZF010000020.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310146 SAMN37668599-rid19601583.denovo.23, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABNJZF010000015.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310146 SAMN37668599-rid19601583.denovo.15, whole genome shotgun sequence	4108..4369		enterobacteriales	IncX1	98.93	374 / 374	ABNJZF010000017.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310146 SAMN37668599-rid19601583.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABNJZF010000002.1	554120..554989	99.54	870	0						
GCA_032386755.1_PDT001914693.1_genomic.fna	Salmonella_enterica	0.5214	234.757 KB	7	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNJZG010000001.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS32310215 SAMN37668571-rid19602773.denovo.01, whole genome shotgun sequence	147847..148284	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNJZG010000044.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS32310215 SAMN37668571-rid19602773.guided.29, whole genome shotgun sequence	16059..16496	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNJZG010000036.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS32310215 SAMN37668571-rid19602773.denovo.38, whole genome shotgun sequence	371..501																																																																	
GCA_032386775.1_PDT001914000.1_genomic.fna	Salmonella_enterica	0.5206	161.062 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAKG010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 22F108 SAMEA112364890-rid19600183.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAKG010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 22F108 SAMEA112364890-rid19600183.denovo.47, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAKG010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 22F108 SAMEA112364890-rid19600183.denovo.47, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAKG010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 22F108 SAMEA112364890-rid19600183.guided.39, whole genome shotgun sequence	995..1429	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAKG010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 22F108 SAMEA112364890-rid19600183.guided.50, whole genome shotgun sequence	3384..4220	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAKG010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 22F108 SAMEA112364890-rid19600183.guided.50, whole genome shotgun sequence	2581..3384	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQAKG010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 22F108 SAMEA112364890-rid19600183.denovo.56, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAKG010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 22F108 SAMEA112364890-rid19600183.guided.57, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAKG010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 22F108 SAMEA112364890-rid19600183.denovo.41, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAKG010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 22F108 SAMEA112364890-rid19600183.guided.53, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAKG010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 22F108 SAMEA112364890-rid19600183.denovo.41, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAKG010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 22F108 SAMEA112364890-rid19600183.denovo.47, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAKG010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 22F108 SAMEA112364890-rid19600183.guided.49, whole genome shotgun sequence	3247..4086	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAKG010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 22F108 SAMEA112364890-rid19600183.guided.50, whole genome shotgun sequence	1705..2520	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQAKG010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 22F108 SAMEA112364890-rid19600183.denovo.41, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAKG010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 22F108 SAMEA112364890-rid19600183.guided.49, whole genome shotgun sequence	2203..2676	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032386935.1_PDT001826441.1_genomic.fna	Salmonella_enterica	0.5225	68.512 KB	22	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJZI010000048.1 Salmonella enterica strain PNUSAS365724 SAMN36696988-rid18858833.denovo.048, whole genome shotgun sequence	14076..14513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJZI010000144.1 Salmonella enterica strain PNUSAS365724 SAMN36696988-rid18858833.guided.062, whole genome shotgun sequence	8890..9327	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJZI010000074.1 Salmonella enterica strain PNUSAS365724 SAMN36696988-rid18858833.denovo.075, whole genome shotgun sequence	9243..9885	enterobacteriales	IncFII(S)	100	262 / 262	ABNJZI010000093.1 Salmonella enterica strain PNUSAS365724 SAMN36696988-rid18858833.denovo.096, whole genome shotgun sequence	3423..3684																																																avrA	ABNJZI010000017.1	62026..62895	99.54	870	0						
GCA_032386975.1_PDT001826408.1_genomic.fna	Salmonella_enterica	0.5211	228.096 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNJZS010000002.1 Salmonella enterica strain PNUSAS365664 SAMN36696568-rid18858183.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNJZS010000051.1 Salmonella enterica strain PNUSAS365664 SAMN36696568-rid18858183.guided.18, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNJZS010000016.1 Salmonella enterica strain PNUSAS365664 SAMN36696568-rid18858183.denovo.16, whole genome shotgun sequence	86329..86971	enterobacteriales	IncFII(S)	100	262 / 262	ABNJZS010000016.1 Salmonella enterica strain PNUSAS365664 SAMN36696568-rid18858183.denovo.16, whole genome shotgun sequence	70983..71244		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNJZS010000030.1 Salmonella enterica strain PNUSAS365664 SAMN36696568-rid18858183.denovo.32, whole genome shotgun sequence	17647..17788																																									avrA	ABNJZS010000005.1	155205..156073	100	869	0						
GCA_032386995.1_PDT001826433.1_genomic.fna	Salmonella_enterica	0.5225	73.731 KB	22	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	7	aac(6')-Iaa,aadA12,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA12,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNJZR010000021.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.denovo.021, whole genome shotgun sequence	11318..11755	Amikacin, Tobramycin	NC_003197	aadA12	100	792/792	ABNJZR010000107.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.denovo.110, whole genome shotgun sequence	369..1160	Spectinomycin, Streptomycin	AY665771	aph(6)-Id	100	831/831	ABNJZR010000110.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.denovo.115, whole genome shotgun sequence	8..838	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABNJZR010000110.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.denovo.115, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNJZR010000144.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.guided.083, whole genome shotgun sequence	14412..14849	Amikacin, Tobramycin	NC_003197	aadA12	100	792/792	ABNJZR010000145.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.guided.111, whole genome shotgun sequence	3709..4500	Spectinomycin, Streptomycin	AY665771	aph(6)-Id	100	831/831	ABNJZR010000146.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.guided.114, whole genome shotgun sequence	3586..4416	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABNJZR010000146.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.guided.114, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNJZR010000113.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.denovo.120, whole genome shotgun sequence	523..1383	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNJZR010000148.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.guided.118, whole genome shotgun sequence	1166..2026	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNJZR010000110.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.denovo.115, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNJZR010000146.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.guided.114, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNJZR010000105.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.denovo.108, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJZR010000147.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.guided.117, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncFIB(S)	100	643 / 643	ABNJZR010000098.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.denovo.101, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNJZR010000040.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.denovo.040, whole genome shotgun sequence	29425..29686		enterobacteriales	IncX1	99.2	374 / 374	ABNJZR010000089.1 Salmonella enterica strain PNUSAS365726 SAMN36696985-rid18858253.denovo.092, whole genome shotgun sequence	3540..3913																																									avrA	ABNJZR010000009.1	100081..100950	99.885	870	0						
GCA_032387015.1_PDT001826407.1_genomic.fna	Salmonella_enterica	0.5211	301.044 KB	5	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNJZN010000001.1 Salmonella enterica strain PNUSAS365673 SAMN36696561-rid18858603.denovo.01, whole genome shotgun sequence	346929..347366	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNJZN010000032.1 Salmonella enterica strain PNUSAS365673 SAMN36696561-rid18858603.guided.20, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJZN010000005.1	150551..151420	99.54	870	0						
GCA_032387035.1_PDT001826406.1_genomic.fna	Salmonella_enterica	0.5222	62.108 KB	23	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJZO010000047.1 Salmonella enterica strain PNUSAS365725 SAMN36696986-rid18858593.denovo.047, whole genome shotgun sequence	16082..16519	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJZO010000148.1 Salmonella enterica strain PNUSAS365725 SAMN36696986-rid18858593.guided.082, whole genome shotgun sequence	15614..16051	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJZO010000086.1 Salmonella enterica strain PNUSAS365725 SAMN36696986-rid18858593.denovo.088, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNJZO010000099.1 Salmonella enterica strain PNUSAS365725 SAMN36696986-rid18858593.denovo.101, whole genome shotgun sequence	3413..3674																																																avrA	ABNJZO010000004.1	61999..62868	99.54	870	0						
GCA_032387055.1_PDT001826403.1_genomic.fna	Salmonella_enterica	0.5223	358.37 KB	5	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNJZP010000001.1 Salmonella enterica strain PNUSAS365668 SAMN36696572-rid18858173.denovo.01, whole genome shotgun sequence	681123..681560	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJZP010000026.1 Salmonella enterica strain PNUSAS365668 SAMN36696572-rid18858173.denovo.30, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNJZP010000026.1 Salmonella enterica strain PNUSAS365668 SAMN36696572-rid18858173.denovo.30, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNJZP010000026.1 Salmonella enterica strain PNUSAS365668 SAMN36696572-rid18858173.denovo.30, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNJZP010000026.1 Salmonella enterica strain PNUSAS365668 SAMN36696572-rid18858173.denovo.30, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNJZP010000026.1 Salmonella enterica strain PNUSAS365668 SAMN36696572-rid18858173.denovo.30, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNJZP010000040.1 Salmonella enterica strain PNUSAS365668 SAMN36696572-rid18858173.guided.21, whole genome shotgun sequence	31087..31524	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNJZP010000042.1 Salmonella enterica strain PNUSAS365668 SAMN36696572-rid18858173.guided.29, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNJZP010000042.1 Salmonella enterica strain PNUSAS365668 SAMN36696572-rid18858173.guided.29, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNJZP010000042.1 Salmonella enterica strain PNUSAS365668 SAMN36696572-rid18858173.guided.29, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNJZP010000042.1 Salmonella enterica strain PNUSAS365668 SAMN36696572-rid18858173.guided.29, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNJZP010000042.1 Salmonella enterica strain PNUSAS365668 SAMN36696572-rid18858173.guided.29, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNJZP010000028.1 Salmonella enterica strain PNUSAS365668 SAMN36696572-rid18858173.denovo.32, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJZP010000043.1 Salmonella enterica strain PNUSAS365668 SAMN36696572-rid18858173.guided.34, whole genome shotgun sequence	977..2176	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNJZP010000002.1	526334..527203	99.655	870	0						
GCA_032387075.1_PDT001826405.1_genomic.fna	Salmonella_enterica	0.5198	465.733 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJZQ010000002.1 Salmonella enterica strain PNUSAS365672 SAMN36696564-rid18858583.denovo.02, whole genome shotgun sequence	477381..477818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJZQ010000028.1 Salmonella enterica strain PNUSAS365672 SAMN36696564-rid18858583.guided.22, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJZQ010000016.1 Salmonella enterica strain PNUSAS365672 SAMN36696564-rid18858583.denovo.17, whole genome shotgun sequence	2465..2998	enterobacteriales	IncX1	98.4	374 / 374	ABNJZQ010000019.1 Salmonella enterica strain PNUSAS365672 SAMN36696564-rid18858583.denovo.20, whole genome shotgun sequence	6956..7329																																																avrA	ABNJZQ010000012.1	95071..95941	99.196	871	0						
GCA_032387115.1_PDT001826398.1_genomic.fna	Salmonella_enterica	0.52	368.265 KB	6	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNJZU010000004.1 Salmonella enterica strain PNUSAS365685 SAMN36696881-rid18858163.denovo.04, whole genome shotgun sequence	367994..368431	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNJZU010000041.1 Salmonella enterica strain PNUSAS365685 SAMN36696881-rid18858163.guided.30, whole genome shotgun sequence	2616..3053	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNJZU010000019.1 Salmonella enterica strain PNUSAS365685 SAMN36696881-rid18858163.denovo.19, whole genome shotgun sequence	43919..44561																																																																	
GCA_032387155.1_PDT001826389.1_genomic.fna	Salmonella_enterica	0.5207	224.153 KB	7	aroC_16,dnaN_2,hemD_95,hisD_117,purE_36,sucA_39,thrA_117	350	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_95	hisD	100	100	hisD_117	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_117	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJZY010000001.1 Salmonella enterica strain PNUSAS365675 SAMN36696562-rid18858453.denovo.01, whole genome shotgun sequence	526418..526855	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJZY010000042.1 Salmonella enterica strain PNUSAS365675 SAMN36696562-rid18858453.guided.30, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNJZY010000033.1 Salmonella enterica strain PNUSAS365675 SAMN36696562-rid18858453.denovo.36, whole genome shotgun sequence	1251..1381	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJZY010000022.1 Salmonella enterica strain PNUSAS365675 SAMN36696562-rid18858453.denovo.22, whole genome shotgun sequence	2465..2998																																																avrA	ABNJZY010000016.1	93876..94745	99.31	870	0						
GCA_032387175.1_PDT001826396.1_genomic.fna	Salmonella_enterica	0.5201	305.823 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKAA010000001.1 Salmonella enterica strain PNUSAS365666 SAMN36696565-rid18858513.denovo.01, whole genome shotgun sequence	512004..512441	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKAA010000042.1 Salmonella enterica strain PNUSAS365666 SAMN36696565-rid18858513.guided.24, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKAA010000022.1 Salmonella enterica strain PNUSAS365666 SAMN36696565-rid18858513.denovo.22, whole genome shotgun sequence	2465..2998																																																						avrA	ABNKAA010000013.1	95071..95941	99.196	871	0						
GCA_032387195.1_PDT001826390.1_genomic.fna	Salmonella_enterica	0.5217	98.812 KB	16	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNJZW010000023.1 Salmonella enterica strain PNUSAS365731 SAMN36696983-rid18858463.denovo.23, whole genome shotgun sequence	16074..16511	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNJZW010000084.1 Salmonella enterica strain PNUSAS365731 SAMN36696983-rid18858463.guided.46, whole genome shotgun sequence	15774..16211	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNJZW010000059.1 Salmonella enterica strain PNUSAS365731 SAMN36696983-rid18858463.denovo.61, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABNJZW010000067.1 Salmonella enterica strain PNUSAS365731 SAMN36696983-rid18858463.denovo.70, whole genome shotgun sequence	3421..3682																																																avrA	ABNJZW010000001.1	175109..175978	99.54	870	0						
GCA_032387215.1_PDT001826387.1_genomic.fna	Salmonella_enterica	0.5211	233.971 KB	8	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNJZZ010000001.1 Salmonella enterica strain PNUSAS365670 SAMN36696567-rid18858443.denovo.01, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNJZZ010000045.1 Salmonella enterica strain PNUSAS365670 SAMN36696567-rid18858443.guided.26, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNJZZ010000023.1 Salmonella enterica strain PNUSAS365670 SAMN36696567-rid18858443.denovo.23, whole genome shotgun sequence	6324..6857																																																						avrA	ABNJZZ010000015.1	93995..94864	99.54	870	0						
GCA_032387235.1_PDT001826388.1_genomic.fna	Salmonella_enterica	0.5209	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNJZX010000001.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJZX010000012.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.denovo.12, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJZX010000012.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.denovo.12, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNJZX010000039.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.denovo.46, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNJZX010000039.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.denovo.46, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNJZX010000053.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.guided.14, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNJZX010000056.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.guided.29, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNJZX010000056.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.guided.29, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNJZX010000059.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.guided.45, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNJZX010000059.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.guided.45, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNJZX010000041.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.denovo.48, whole genome shotgun sequence	828..1703	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNJZX010000060.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.guided.50, whole genome shotgun sequence	507..1382	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNJZX010000036.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.denovo.41, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNJZX010000057.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.guided.40, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNJZX010000012.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.denovo.12, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNJZX010000056.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.guided.29, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNJZX010000012.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.denovo.12, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNJZX010000056.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.guided.29, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNJZX010000033.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.denovo.37, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNJZX010000058.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.guided.42, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNJZX010000029.1 Salmonella enterica strain PNUSAS365686 SAMN36696880-rid18858143.denovo.33, whole genome shotgun sequence	9109..9668																																																						avrA	ABNJZX010000002.1	94091..94960	99.655	870	0						
GCA_032387355.1_PDT001826319.1_genomic.fna	Salmonella_enterica	0.5227	81.511 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKAI010000024.1 Salmonella enterica strain PNUSAS365729 SAMN36696989-rid18854273.denovo.024, whole genome shotgun sequence	12525..12962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKAI010000116.1 Salmonella enterica strain PNUSAS365729 SAMN36696989-rid18854273.guided.080, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKAI010000078.1 Salmonella enterica strain PNUSAS365729 SAMN36696989-rid18854273.denovo.081, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNKAI010000044.1 Salmonella enterica strain PNUSAS365729 SAMN36696989-rid18854273.denovo.044, whole genome shotgun sequence	29393..29654																																																avrA	ABNKAI010000004.1	105286..106155	99.885	870	0						
GCA_032387375.1_PDT001826321.1_genomic.fna	Salmonella_enterica	0.5226	638.61 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pMET)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNKAH010000001.1 Salmonella enterica strain PNUSAS365687 SAMN36696927-rid18857363.denovo.01, whole genome shotgun sequence	1123371..1123808	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNKAH010000026.1 Salmonella enterica strain PNUSAS365687 SAMN36696927-rid18857363.guided.19, whole genome shotgun sequence	2675..3112	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pMET)	98.27	577 / 577	ABNKAH010000016.1 Salmonella enterica strain PNUSAS365687 SAMN36696927-rid18857363.denovo.17, whole genome shotgun sequence	28348..28924																																																						avrA	ABNKAH010000003.1	543741..544610	99.54	870	0						
GCA_032387395.1_PDT001914809.1_genomic.fna	Salmonella_enterica	0.521	476.801 KB	3	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAKJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759874-rid19603683.denovo.01, whole genome shotgun sequence	794359..794796	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAKJ010000032.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759874-rid19603683.guided.17, whole genome shotgun sequence	15933..16370	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAKJ010000012.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759874-rid19603683.denovo.12, whole genome shotgun sequence	63410..63669	enterobacteriales	IncX1	98.66	374 / 374	DAQAKJ010000012.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759874-rid19603683.denovo.12, whole genome shotgun sequence	24697..25070																																																avrA	DAQAKJ010000002.1	504111..504979	99.655	870	0						
GCA_032387415.1_PDT001826318.1_genomic.fna	Salmonella_enterica	0.5224	353.729 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNKAG010000002.1 Salmonella enterica strain PNUSAS365677 SAMN36696573-rid18857343.denovo.02, whole genome shotgun sequence	293528..293965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNKAG010000023.1 Salmonella enterica strain PNUSAS365677 SAMN36696573-rid18857343.guided.17, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKAG010000001.1	406257..407125	99.425	870	0						
GCA_032387435.1_PDT001914794.1_genomic.fna	Salmonella_enterica	0.5209	402.365 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAKK010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759850-rid19603553.denovo.04, whole genome shotgun sequence	155133..155570	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAKK010000039.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759850-rid19603553.guided.28, whole genome shotgun sequence	263..700	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAKK010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759850-rid19603553.denovo.25, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAKK010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759850-rid19603553.denovo.14, whole genome shotgun sequence	63427..63686		enterobacteriales	IncX1	98.66	374 / 374	DAQAKK010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759850-rid19603553.denovo.14, whole genome shotgun sequence	24683..25056																																									avrA	DAQAKK010000001.1	504305..505173	99.655	870	0						
GCA_032387455.1_PDT001914780.1_genomic.fna	Salmonella_enterica	0.52	477.473 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		5	ColRNAI,IncFIB(AP001918),IncFII(S),IncFII(pCoo),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAKM010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759825-rid19603413.denovo.01, whole genome shotgun sequence	802035..802472	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAKM010000035.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759825-rid19603413.guided.19, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAKM010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759825-rid19603413.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFIB(AP001918)	99.27	682 / 682	DAQAKM010000012.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759825-rid19603413.denovo.12, whole genome shotgun sequence	80443..81124		enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAKM010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759825-rid19603413.denovo.15, whole genome shotgun sequence	63427..63686		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	DAQAKM010000012.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759825-rid19603413.denovo.12, whole genome shotgun sequence	12191..12452		enterobacteriales	IncX1	98.66	374 / 374	DAQAKM010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759825-rid19603413.denovo.15, whole genome shotgun sequence	24683..25056																											avrA	DAQAKM010000002.1	504594..505462	99.655	870	0						
GCA_032387475.1_PDT001914793.1_genomic.fna	Salmonella_enterica	0.5209	405.765 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAKL010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759840-rid19603543.denovo.01, whole genome shotgun sequence	802056..802493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAKL010000035.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759840-rid19603543.guided.20, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAKL010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759840-rid19603543.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAKL010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759840-rid19603543.denovo.14, whole genome shotgun sequence	63425..63684		enterobacteriales	IncX1	98.66	374 / 374	DAQAKL010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759840-rid19603543.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAKL010000002.1	504298..505166	99.655	870	0						
GCA_032387495.1_PDT001914755.1_genomic.fna	Salmonella_enterica	0.5209	362.967 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAKN010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759766-rid19603173.denovo.01, whole genome shotgun sequence	794418..794855	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAKN010000041.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759766-rid19603173.guided.27, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAKN010000030.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759766-rid19603173.denovo.33, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAKN010000017.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759766-rid19603173.denovo.17, whole genome shotgun sequence	63436..63695		enterobacteriales	IncX1	98.66	374 / 374	DAQAKN010000017.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759766-rid19603173.denovo.17, whole genome shotgun sequence	24683..25056																																									avrA	DAQAKN010000003.1	173564..174432	99.655	870	0						
GCA_032387515.1_PDT001914735.1_genomic.fna	Salmonella_enterica	0.5203	412.036 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		5	ColRNAI,IncFIB(AP001918),IncFII(S),IncFII(pCoo),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAKO010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759737-rid19602983.denovo.04, whole genome shotgun sequence	155691..156128	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAKO010000035.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759737-rid19602983.guided.22, whole genome shotgun sequence	14149..14586	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAKO010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759737-rid19602983.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFIB(AP001918)	99.27	682 / 682	DAQAKO010000012.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759737-rid19602983.denovo.12, whole genome shotgun sequence	80415..81096		enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAKO010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759737-rid19602983.denovo.15, whole genome shotgun sequence	63445..63704		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	DAQAKO010000012.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759737-rid19602983.denovo.12, whole genome shotgun sequence	12163..12424		enterobacteriales	IncX1	98.66	374 / 374	DAQAKO010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759737-rid19602983.denovo.15, whole genome shotgun sequence	24683..25056																											avrA	DAQAKO010000001.1	504293..505161	99.655	870	0						
GCA_032387535.1_PDT001914749.1_genomic.fna	Salmonella_enterica	0.521	421.172 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAKQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759759-rid19603113.denovo.01, whole genome shotgun sequence	802056..802493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAKQ010000034.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759759-rid19603113.guided.24, whole genome shotgun sequence	3123..3560	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAKQ010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759759-rid19603113.denovo.25, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAKQ010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759759-rid19603113.denovo.13, whole genome shotgun sequence	63425..63684		enterobacteriales	IncX1	98.66	374 / 374	DAQAKQ010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759759-rid19603113.denovo.13, whole genome shotgun sequence	24684..25057																																									avrA	DAQAKQ010000002.1	504304..505172	99.655	870	0						
GCA_032387555.1_PDT001914743.1_genomic.fna	Salmonella_enterica	0.5209	402.385 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAKP010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759752-rid19603053.denovo.01, whole genome shotgun sequence	802056..802493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAKP010000043.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759752-rid19603053.guided.30, whole genome shotgun sequence	684..1121	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAKP010000025.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759752-rid19603053.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAKP010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759752-rid19603053.denovo.14, whole genome shotgun sequence	63425..63684		enterobacteriales	IncX1	98.66	374 / 374	DAQAKP010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759752-rid19603053.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQAKP010000002.1	504574..505442	99.655	870	0						
GCA_032387595.1_PDT001826308.1_genomic.fna	Salmonella_enterica	0.5221	517.345 KB	4	aroC_16,dnaN_16,hemD_20,hisD_1044,purE_8,sucA_12,thrA_18	4856	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_1044	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKAK010000001.1 Salmonella enterica strain PNUSAS365493 SAMN36696281-rid18857303.denovo.01, whole genome shotgun sequence	658214..658651	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKAK010000023.1 Salmonella enterica strain PNUSAS365493 SAMN36696281-rid18857303.guided.17, whole genome shotgun sequence	7314..7751	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKAK010000003.1	510238..511104	98.966	870	0						
GCA_032387615.1_PDT001826311.1_genomic.fna	Salmonella_enterica	0.5196	415.114 KB	5	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	2	Col(pHAD28),IncFII(p96A)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNKAL010000001.1 Salmonella enterica strain PNUSAS365545 SAMN36696350-rid18858103.denovo.01, whole genome shotgun sequence	692482..692919	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKAL010000022.1 Salmonella enterica strain PNUSAS365545 SAMN36696350-rid18858103.denovo.23, whole genome shotgun sequence	6372..7208	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNKAL010000022.1 Salmonella enterica strain PNUSAS365545 SAMN36696350-rid18858103.denovo.23, whole genome shotgun sequence	5341..6154	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	V00359	aph(3'')-Ib	100	804/804	ABNKAL010000022.1 Salmonella enterica strain PNUSAS365545 SAMN36696350-rid18858103.denovo.23, whole genome shotgun sequence	7208..8011	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNKAL010000037.1 Salmonella enterica strain PNUSAS365545 SAMN36696350-rid18858103.guided.22, whole genome shotgun sequence	2774..3211	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKAL010000041.1 Salmonella enterica strain PNUSAS365545 SAMN36696350-rid18858103.guided.28, whole genome shotgun sequence	3998..4834	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNKAL010000041.1 Salmonella enterica strain PNUSAS365545 SAMN36696350-rid18858103.guided.28, whole genome shotgun sequence	5052..5865	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	V00359	aph(3'')-Ib	100	804/804	ABNKAL010000041.1 Salmonella enterica strain PNUSAS365545 SAMN36696350-rid18858103.guided.28, whole genome shotgun sequence	3195..3998	Streptomycin	AF321551	sul2	99.88	816/816	ABNKAL010000007.1 Salmonella enterica strain PNUSAS365545 SAMN36696350-rid18858103.denovo.07, whole genome shotgun sequence	346212..347027	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNKAL010000039.1 Salmonella enterica strain PNUSAS365545 SAMN36696350-rid18858103.guided.25, whole genome shotgun sequence	4840..5655	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNKAL010000023.1 Salmonella enterica strain PNUSAS365545 SAMN36696350-rid18858103.denovo.26, whole genome shotgun sequence	1194..2399	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNKAL010000040.1 Salmonella enterica strain PNUSAS365545 SAMN36696350-rid18858103.guided.27, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNKAL010000024.1 Salmonella enterica strain PNUSAS365545 SAMN36696350-rid18858103.denovo.30, whole genome shotgun sequence	2209..2339	enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNKAL010000018.1 Salmonella enterica strain PNUSAS365545 SAMN36696350-rid18858103.denovo.18, whole genome shotgun sequence	15755..16288																																																avrA	ABNKAL010000010.1	148277..149145	99.655	869	0						
GCA_032387635.1_PDT001826317.1_genomic.fna	Salmonella_enterica	0.5224	376.532 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKAJ010000004.1 Salmonella enterica strain PNUSAS365684 SAMN36696882-rid18855953.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(S)	100	643 / 643	ABNKAJ010000015.1 Salmonella enterica strain PNUSAS365684 SAMN36696882-rid18855953.denovo.15, whole genome shotgun sequence	48410..49052	enterobacteriales	IncFII(S)	100	262 / 262	ABNKAJ010000015.1 Salmonella enterica strain PNUSAS365684 SAMN36696882-rid18855953.denovo.15, whole genome shotgun sequence	64137..64398																																																avrA	ABNKAJ010000001.1	446736..447604	100	869	0						
GCA_032387655.1_PDT001826307.1_genomic.fna	Salmonella_enterica	0.5212	227.725 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKAN010000001.1 Salmonella enterica strain PNUSAS365605 SAMN36696361-rid18855923.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKAN010000046.1 Salmonella enterica strain PNUSAS365605 SAMN36696361-rid18855923.guided.33, whole genome shotgun sequence	17110..17547	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.89	193 / 193	ABNKAN010000040.1 Salmonella enterica strain PNUSAS365605 SAMN36696361-rid18855923.denovo.43, whole genome shotgun sequence	1653..1845	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKAN010000032.1 Salmonella enterica strain PNUSAS365605 SAMN36696361-rid18855923.denovo.34, whole genome shotgun sequence	6815..7457		enterobacteriales	IncFII(S)	100	262 / 262	ABNKAN010000035.1 Salmonella enterica strain PNUSAS365605 SAMN36696361-rid18855923.denovo.37, whole genome shotgun sequence	3413..3674																																									avrA	ABNKAN010000015.1	39351..40220	99.54	870	0						
GCA_032387695.1_PDT001826303.1_genomic.fna	Salmonella_enterica	0.5206	600.32 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKAO010000001.1 Salmonella enterica strain PNUSAS365550 SAMN36696345-rid18857293.denovo.01, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNKAO010000025.1 Salmonella enterica strain PNUSAS365550 SAMN36696345-rid18857293.guided.14, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKAO010000013.1 Salmonella enterica strain PNUSAS365550 SAMN36696345-rid18857293.denovo.13, whole genome shotgun sequence	34958..35491																																																						avrA	ABNKAO010000003.1	497130..497998	99.425	870	0						
GCA_032387715.1_PDT001826302.1_genomic.fna	Salmonella_enterica	0.5224	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKAP010000001.1 Salmonella enterica strain PNUSAS365510 SAMN36696287-rid18855893.denovo.01, whole genome shotgun sequence	790294..790731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKAP010000031.1 Salmonella enterica strain PNUSAS365510 SAMN36696287-rid18855893.guided.14, whole genome shotgun sequence	14262..14699	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKAP010000002.1	129887..130756	98.966	870	0						
GCA_032387745.1_PDT001826296.1_genomic.fna	Salmonella_enterica	0.5223	398.059 KB	5	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNKAT010000007.1 Salmonella enterica strain PNUSAS365500 SAMN36696292-rid18858073.denovo.07, whole genome shotgun sequence	176724..177161	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNKAT010000035.1 Salmonella enterica strain PNUSAS365500 SAMN36696292-rid18858073.guided.26, whole genome shotgun sequence	363..800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNKAT010000015.1 Salmonella enterica strain PNUSAS365500 SAMN36696292-rid18858073.denovo.15, whole genome shotgun sequence	66818..66959																																																						avrA	ABNKAT010000002.1	407821..408690	99.31	870	0						
GCA_032387795.1_PDT001914012.1_genomic.fna	Salmonella_enterica	0.5207	172.069 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul2,sul2,sul1,dfrA7,dfrA7	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQAKS010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAKS010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.denovo.51, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAKS010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.denovo.51, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQAKS010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.guided.41, whole genome shotgun sequence	6963..7397	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQAKS010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.guided.61, whole genome shotgun sequence	1024..1860	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQAKS010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.guided.61, whole genome shotgun sequence	221..1024	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQAKS010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.denovo.64, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	99.88	861/861	DAQAKS010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.guided.62, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQAKS010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.guided.63, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQAKS010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.denovo.42, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQAKS010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.guided.59, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQAKS010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.denovo.42, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQAKS010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.denovo.51, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	DAQAKS010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.guided.53, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	sul2	99.75	816/816	DAQAKS010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.guided.54, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQAKS010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.guided.57, whole genome shotgun sequence	1324..2163	Sulfamethoxazole	U12338	dfrA7	100	474/474	DAQAKS010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.denovo.42, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQAKS010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate 46M103 SAMEA112364914-rid19601643.guided.57, whole genome shotgun sequence	280..753	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																										gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032387815.1_PDT001826294.1_genomic.fna	Salmonella_enterica	0.5213	476.632 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKAS010000001.1 Salmonella enterica strain PNUSAS365590 SAMN36696386-rid18855853.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKAS010000032.1 Salmonella enterica strain PNUSAS365590 SAMN36696386-rid18855853.guided.19, whole genome shotgun sequence	32229..32666	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKAS010000020.1 Salmonella enterica strain PNUSAS365590 SAMN36696386-rid18855853.denovo.23, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNKAS010000017.1 Salmonella enterica strain PNUSAS365590 SAMN36696386-rid18855853.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABNKAS010000002.1	506094..506963	99.54	870	0						
GCA_032387855.1_PDT001826286.1_genomic.fna	Salmonella_enterica	0.5212	572.054 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKAV010000001.1 Salmonella enterica strain PNUSAS365508 SAMN36696304-rid18858053.denovo.01, whole genome shotgun sequence	642976..643413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKAV010000020.1 Salmonella enterica strain PNUSAS365508 SAMN36696304-rid18858053.guided.15, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032387875.1_PDT001826285.1_genomic.fna	Salmonella_enterica	0.522	341.181 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKAW010000002.1 Salmonella enterica strain PNUSAS365556 SAMN36696339-rid18855803.denovo.02, whole genome shotgun sequence	145210..145647	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKAW010000052.1 Salmonella enterica strain PNUSAS365556 SAMN36696339-rid18855803.guided.29, whole genome shotgun sequence	11385..11822	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKAW010000018.1 Salmonella enterica strain PNUSAS365556 SAMN36696339-rid18855803.denovo.18, whole genome shotgun sequence	36049..36691	enterobacteriales	IncFII(S)	100	262 / 262	ABNKAW010000018.1 Salmonella enterica strain PNUSAS365556 SAMN36696339-rid18855803.denovo.18, whole genome shotgun sequence	51776..52037																																																avrA	ABNKAW010000001.1	450786..451655	99.885	870	0						
GCA_032387895.1_PDT001826292.1_genomic.fna	Salmonella_enterica	0.5208	203.76 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	3	IncFIB(pN55391),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKAU010000005.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.denovo.005, whole genome shotgun sequence	52023..52460	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKAU010000035.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.denovo.035, whole genome shotgun sequence	18747..19538	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKAU010000035.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.denovo.035, whole genome shotgun sequence	18747..19538	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNKAU010000052.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.denovo.059, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNKAU010000052.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.denovo.059, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNKAU010000094.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.guided.040, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKAU010000094.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.guided.040, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNKAU010000100.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.guided.058, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNKAU010000100.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.guided.058, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNKAU010000101.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.guided.064, whole genome shotgun sequence	2267..2704	Amikacin, Tobramycin	NC_003197	blaCTX-M-65	100	876/876	ABNKAU010000073.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.denovo.082, whole genome shotgun sequence	946..1821	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNKAU010000102.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.guided.080, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNKAU010000045.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.denovo.050, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNKAU010000099.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.guided.055, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNKAU010000035.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.denovo.035, whole genome shotgun sequence	17403..18242	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKAU010000094.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.guided.040, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKAU010000035.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.denovo.035, whole genome shotgun sequence	3687..4886	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNKAU010000096.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.guided.043, whole genome shotgun sequence	4571..5770	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKAU010000097.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.guided.044, whole genome shotgun sequence	4571..5770	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKAU010000032.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.denovo.032, whole genome shotgun sequence	9109..9668	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNKAU010000044.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.denovo.049, whole genome shotgun sequence	6101..6242		enterobacteriales	IncX1	98.93	374 / 374	ABNKAU010000027.1 Salmonella enterica strain PNUSAS365608 SAMN36696364-rid18855843.denovo.027, whole genome shotgun sequence	10125..10498																																									avrA	ABNKAU010000001.1	39430..40299	99.655	870	0						
GCA_032387915.1_PDT001826276.1_genomic.fna	Salmonella_enterica	0.5213	148.449 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKAZ010000001.1 Salmonella enterica strain PNUSAS365611 SAMN36696366-rid18857233.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKAZ010000037.1 Salmonella enterica strain PNUSAS365611 SAMN36696366-rid18857233.denovo.37, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKAZ010000037.1 Salmonella enterica strain PNUSAS365611 SAMN36696366-rid18857233.denovo.37, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNKAZ010000069.1 Salmonella enterica strain PNUSAS365611 SAMN36696366-rid18857233.guided.42, whole genome shotgun sequence	180..617	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKAZ010000073.1 Salmonella enterica strain PNUSAS365611 SAMN36696366-rid18857233.guided.56, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKAZ010000073.1 Salmonella enterica strain PNUSAS365611 SAMN36696366-rid18857233.guided.56, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNKAZ010000037.1 Salmonella enterica strain PNUSAS365611 SAMN36696366-rid18857233.denovo.37, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKAZ010000073.1 Salmonella enterica strain PNUSAS365611 SAMN36696366-rid18857233.guided.56, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKAZ010000037.1 Salmonella enterica strain PNUSAS365611 SAMN36696366-rid18857233.denovo.37, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKAZ010000070.1 Salmonella enterica strain PNUSAS365611 SAMN36696366-rid18857233.guided.47, whole genome shotgun sequence	7268..8467	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKAZ010000043.1 Salmonella enterica strain PNUSAS365611 SAMN36696366-rid18857233.denovo.44, whole genome shotgun sequence	9109..9668																																																						avrA	ABNKAZ010000012.1	39349..40218	99.655	870	0						
GCA_032387935.1_PDT001826284.1_genomic.fna	Salmonella_enterica	0.5209	406.986 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKAX010000001.1 Salmonella enterica strain PNUSAS365591 SAMN36696389-rid18855793.denovo.01, whole genome shotgun sequence	477388..477825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKAX010000037.1 Salmonella enterica strain PNUSAS365591 SAMN36696389-rid18855793.guided.21, whole genome shotgun sequence	4649..5086	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKAX010000017.1	39476..40346	99.196	871	0						
GCA_032387955.1_PDT001826281.1_genomic.fna	Salmonella_enterica	0.5212	489.907 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKAY010000001.1 Salmonella enterica strain PNUSAS365547 SAMN36696348-rid18858043.denovo.01, whole genome shotgun sequence	293258..293695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKAY010000023.1 Salmonella enterica strain PNUSAS365547 SAMN36696348-rid18858043.guided.22, whole genome shotgun sequence	335..772	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKAY010000014.1 Salmonella enterica strain PNUSAS365547 SAMN36696348-rid18858043.denovo.14, whole genome shotgun sequence	40545..41187	enterobacteriales	IncFII(S)	100	262 / 262	ABNKAY010000017.1 Salmonella enterica strain PNUSAS365547 SAMN36696348-rid18858043.denovo.17, whole genome shotgun sequence	3392..3653																																																avrA	ABNKAY010000002.1	584138..585007	99.54	870	0						
GCA_032387975.1_PDT001826274.1_genomic.fna	Salmonella_enterica	0.5211	321.639 KB	6	aroC_13,dnaN_127,hemD_506,hisD_113,purE_114,sucA_107,thrA_4	3095	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_506	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKBA010000001.1 Salmonella enterica strain PNUSAS365587 SAMN36696384-rid18854243.denovo.01, whole genome shotgun sequence	348348..348785	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKBA010000036.1 Salmonella enterica strain PNUSAS365587 SAMN36696384-rid18854243.guided.21, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKBA010000016.1	39397..40266	99.425	870	0						
GCA_032388035.1_PDT001826262.1_genomic.fna	Salmonella_enterica	0.5212	349.597 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKBD010000004.1 Salmonella enterica strain PNUSAS365495 SAMN36696305-rid18854213.denovo.04, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKBD010000026.1 Salmonella enterica strain PNUSAS365495 SAMN36696305-rid18854213.guided.20, whole genome shotgun sequence	5992..6429	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKBD010000001.1	586739..587608	99.54	870	0						
GCA_032388075.1_PDT001826261.1_genomic.fna	Salmonella_enterica	0.521	399.339 KB	6	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNKBE010000001.1 Salmonella enterica strain PNUSAS365549 SAMN36696346-rid18858023.denovo.01, whole genome shotgun sequence	529346..529783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNKBE010000077.1 Salmonella enterica strain PNUSAS365549 SAMN36696346-rid18858023.guided.34, whole genome shotgun sequence	8312..8749	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNKBE010000026.1 Salmonella enterica strain PNUSAS365549 SAMN36696346-rid18858023.denovo.26, whole genome shotgun sequence	11463..12105	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNKBE010000028.1 Salmonella enterica strain PNUSAS365549 SAMN36696346-rid18858023.denovo.28, whole genome shotgun sequence	10792..11374																																																avrA	ABNKBE010000004.1	139845..140714	99.77	870	0						
GCA_032388095.1_PDT001826257.1_genomic.fna	Salmonella_enterica	0.5211	266.881 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNKBG010000001.1 Salmonella enterica strain PNUSAS365490 SAMN36696310-rid18855673.denovo.01, whole genome shotgun sequence	494575..495012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNKBG010000035.1 Salmonella enterica strain PNUSAS365490 SAMN36696310-rid18855673.guided.26, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKBG010000002.1	144854..145723	99.31	870	0						
GCA_032388115.1_PDT001826254.1_genomic.fna	Salmonella_enterica	0.521	478.612 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKBH010000001.1 Salmonella enterica strain PNUSAS365511 SAMN36696297-rid18854203.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKBH010000028.1 Salmonella enterica strain PNUSAS365511 SAMN36696297-rid18854203.guided.16, whole genome shotgun sequence	11229..11666	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKBH010000015.1 Salmonella enterica strain PNUSAS365511 SAMN36696297-rid18854203.denovo.15, whole genome shotgun sequence	48513..49155	enterobacteriales	IncFII(S)	100	262 / 262	ABNKBH010000015.1 Salmonella enterica strain PNUSAS365511 SAMN36696297-rid18854203.denovo.15, whole genome shotgun sequence	4260..4521																																																avrA	ABNKBH010000002.1	585485..586354	99.54	870	0						
GCA_032388135.1_PDT001826252.1_genomic.fna	Salmonella_enterica	0.523	473.222 KB	4	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNKBJ010000001.1 Salmonella enterica strain PNUSAS365562 SAMN36696327-rid18854193.denovo.01, whole genome shotgun sequence	258764..259201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNKBJ010000029.1 Salmonella enterica strain PNUSAS365562 SAMN36696327-rid18854193.guided.25, whole genome shotgun sequence	845..1282	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKBJ010000002.1	557472..558340	99.425	870	0						
GCA_032388155.1_PDT001826250.1_genomic.fna	Salmonella_enterica	0.5202	233.591 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	5	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		4	ColpVC,IncC,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKBI010000001.1 Salmonella enterica strain PNUSAS365498 SAMN36696306-rid18855653.denovo.01, whole genome shotgun sequence	145193..145630	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	812/816	ABNKBI010000048.1 Salmonella enterica strain PNUSAS365498 SAMN36696306-rid18855653.denovo.53, whole genome shotgun sequence	1..812	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	V00359	aac(6')-Iaa	100	438/438	ABNKBI010000062.1 Salmonella enterica strain PNUSAS365498 SAMN36696306-rid18855653.guided.42, whole genome shotgun sequence	9278..9715	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNKBI010000064.1 Salmonella enterica strain PNUSAS365498 SAMN36696306-rid18855653.guided.57, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	V00359	blaCMY-2	100	1146/1146	ABNKBI010000020.1 Salmonella enterica strain PNUSAS365498 SAMN36696306-rid18855653.denovo.20, whole genome shotgun sequence	14261..15406	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNKBI010000059.1 Salmonella enterica strain PNUSAS365498 SAMN36696306-rid18855653.guided.35, whole genome shotgun sequence	13901..15046	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNKBI010000035.1 Salmonella enterica strain PNUSAS365498 SAMN36696306-rid18855653.denovo.37, whole genome shotgun sequence	10342..11157	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNKBI010000060.1 Salmonella enterica strain PNUSAS365498 SAMN36696306-rid18855653.guided.36, whole genome shotgun sequence	10383..11198	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNKBI010000035.1 Salmonella enterica strain PNUSAS365498 SAMN36696306-rid18855653.denovo.37, whole genome shotgun sequence	13334..14533	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKBI010000060.1 Salmonella enterica strain PNUSAS365498 SAMN36696306-rid18855653.guided.36, whole genome shotgun sequence	13375..14574	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	ColpVC	96.89	193 / 193	ABNKBI010000046.1 Salmonella enterica strain PNUSAS365498 SAMN36696306-rid18855653.denovo.51, whole genome shotgun sequence	1524..1716	enterobacteriales	IncC	100	417 / 417	ABNKBI010000033.1 Salmonella enterica strain PNUSAS365498 SAMN36696306-rid18855653.denovo.33, whole genome shotgun sequence	28109..28525		enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	ABNKBI010000018.1 Salmonella enterica strain PNUSAS365498 SAMN36696306-rid18855653.denovo.18, whole genome shotgun sequence	68617..68756		enterobacteriales	IncX1	98.66	374 / 374	ABNKBI010000031.1 Salmonella enterica strain PNUSAS365498 SAMN36696306-rid18855653.denovo.31, whole genome shotgun sequence	13108..13481																																		avrA	ABNKBI010000004.1	131700..132569	99.885	870	0						
GCA_032388175.1_PDT001826248.1_genomic.fna	Salmonella_enterica	0.5159	378.664 KB	5	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNKBL010000004.1 Salmonella enterica strain PNUSAS365548 SAMN36696347-rid18857153.denovo.04, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNKBL010000037.1 Salmonella enterica strain PNUSAS365548 SAMN36696347-rid18857153.guided.26, whole genome shotgun sequence	1254..1691	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032388195.1_PDT001826246.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKBK010000001.1 Salmonella enterica strain PNUSAS365559 SAMN36696330-rid18857143.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKBK010000020.1 Salmonella enterica strain PNUSAS365559 SAMN36696330-rid18857143.guided.17, whole genome shotgun sequence	2651..3088	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABNKBK010000002.1	553636..554505	99.54	870	0						
GCA_032388215.1_PDT001826243.1_genomic.fna	Salmonella_enterica	0.521	498.558 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKBM010000001.1 Salmonella enterica strain PNUSAS365551 SAMN36696344-rid18857123.denovo.01, whole genome shotgun sequence	422055..422492	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNKBM010000029.1 Salmonella enterica strain PNUSAS365551 SAMN36696344-rid18857123.guided.22, whole genome shotgun sequence	5800..6237	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKBM010000014.1 Salmonella enterica strain PNUSAS365551 SAMN36696344-rid18857123.denovo.15, whole genome shotgun sequence	34958..35491																																																						avrA	ABNKBM010000003.1	394867..395735	99.425	870	0						
GCA_032388235.1_PDT001826240.1_genomic.fna	Salmonella_enterica	0.5209	490.014 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKBP010000001.1 Salmonella enterica strain PNUSAS365561 SAMN36696328-rid18855613.denovo.01, whole genome shotgun sequence	815011..815448	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKBP010000023.1 Salmonella enterica strain PNUSAS365561 SAMN36696328-rid18855613.guided.14, whole genome shotgun sequence	3693..4130	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNKBP010000012.1 Salmonella enterica strain PNUSAS365561 SAMN36696328-rid18855613.denovo.12, whole genome shotgun sequence	19657..20517	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNKBP010000025.1 Salmonella enterica strain PNUSAS365561 SAMN36696328-rid18855613.guided.20, whole genome shotgun sequence	1405..2265	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKBP010000012.1 Salmonella enterica strain PNUSAS365561 SAMN36696328-rid18855613.denovo.12, whole genome shotgun sequence	53662..54304	enterobacteriales	IncFII(S)	100	262 / 262	ABNKBP010000012.1 Salmonella enterica strain PNUSAS365561 SAMN36696328-rid18855613.denovo.12, whole genome shotgun sequence	4454..4715																																																avrA	ABNKBP010000002.1	553355..554224	99.54	870	0						
GCA_032388255.1_PDT001826239.1_genomic.fna	Salmonella_enterica	0.5213	600.304 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKBQ010000001.1 Salmonella enterica strain PNUSAS365560 SAMN36696329-rid18857993.denovo.01, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNKBQ010000025.1 Salmonella enterica strain PNUSAS365560 SAMN36696329-rid18857993.guided.11, whole genome shotgun sequence	35996..36433	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKBQ010000003.1	497124..497992	99.425	870	0						
GCA_032388275.1_PDT001826242.1_genomic.fna	Salmonella_enterica	0.5214	291.859 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKBN010000001.1 Salmonella enterica strain PNUSAS365567 SAMN36696322-rid18854183.denovo.01, whole genome shotgun sequence	381670..382107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKBN010000031.1 Salmonella enterica strain PNUSAS365567 SAMN36696322-rid18854183.guided.26, whole genome shotgun sequence	1081..1518	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKBN010000002.1	402725..403594	99.885	870	0						
GCA_032388295.1_PDT001826241.1_genomic.fna	Salmonella_enterica	0.5206	396.964 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6*,sucA_138,thrA_133	404*	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	99.749373433584	100	purE_6*	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKBO010000010.1 Salmonella enterica strain PNUSAS365520 SAMN36696269-rid18858003.denovo.10, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKBO010000053.1 Salmonella enterica strain PNUSAS365520 SAMN36696269-rid18858003.guided.22, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKBO010000019.1 Salmonella enterica strain PNUSAS365520 SAMN36696269-rid18858003.denovo.19, whole genome shotgun sequence	34957..35490																																																						avrA	ABNKBO010000003.1	39554..40420	98.966	870	0						
GCA_032388315.1_PDT001826234.1_genomic.fna	Salmonella_enterica	0.5215	195.318 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKBS010000001.1 Salmonella enterica strain PNUSAS365503 SAMN36696303-rid18857983.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNKBS010000041.1 Salmonella enterica strain PNUSAS365503 SAMN36696303-rid18857983.denovo.47, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNKBS010000041.1 Salmonella enterica strain PNUSAS365503 SAMN36696303-rid18857983.denovo.47, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNKBS010000060.1 Salmonella enterica strain PNUSAS365503 SAMN36696303-rid18857983.guided.38, whole genome shotgun sequence	10083..10520	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNKBS010000063.1 Salmonella enterica strain PNUSAS365503 SAMN36696303-rid18857983.guided.46, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNKBS010000063.1 Salmonella enterica strain PNUSAS365503 SAMN36696303-rid18857983.guided.46, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNKBS010000040.1 Salmonella enterica strain PNUSAS365503 SAMN36696303-rid18857983.denovo.44, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNKBS010000061.1 Salmonella enterica strain PNUSAS365503 SAMN36696303-rid18857983.guided.43, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	dfrA14	100	474/474	ABNKBS010000038.1 Salmonella enterica strain PNUSAS365503 SAMN36696303-rid18857983.denovo.41, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNKBS010000062.1 Salmonella enterica strain PNUSAS365503 SAMN36696303-rid18857983.guided.45, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKBS010000033.1 Salmonella enterica strain PNUSAS365503 SAMN36696303-rid18857983.denovo.34, whole genome shotgun sequence	9109..9668																																																						avrA	ABNKBS010000002.1	93814..94683	99.655	870	0						
GCA_032388335.1_PDT001826230.1_genomic.fna	Salmonella_enterica	0.5211	600.324 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKBT010000001.1 Salmonella enterica strain PNUSAS365573 SAMN36696316-rid18855583.denovo.01, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNKBT010000025.1 Salmonella enterica strain PNUSAS365573 SAMN36696316-rid18855583.guided.21, whole genome shotgun sequence	2293..2730	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKBT010000014.1 Salmonella enterica strain PNUSAS365573 SAMN36696316-rid18855583.denovo.14, whole genome shotgun sequence	34930..35463																																																						avrA	ABNKBT010000003.1	497142..498010	99.425	870	0						
GCA_032388355.1_PDT001826225.1_genomic.fna	Salmonella_enterica	0.5214	400.759 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKBU010000001.1 Salmonella enterica strain PNUSAS365506 SAMN36696300-rid18855563.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKBU010000030.1 Salmonella enterica strain PNUSAS365506 SAMN36696300-rid18855563.guided.24, whole genome shotgun sequence	2016..2453	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKBU010000017.1 Salmonella enterica strain PNUSAS365506 SAMN36696300-rid18855563.denovo.17, whole genome shotgun sequence	48121..48763	enterobacteriales	IncFII(S)	100	262 / 262	ABNKBU010000017.1 Salmonella enterica strain PNUSAS365506 SAMN36696300-rid18855563.denovo.17, whole genome shotgun sequence	3877..4138																																																avrA	ABNKBU010000002.1	506069..506938	99.54	870	0						
GCA_032388415.1_PDT001826224.1_genomic.fna	Salmonella_enterica	0.5213	232.04 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKBV010000001.1 Salmonella enterica strain PNUSAS365604 SAMN36696365-rid18857073.denovo.01, whole genome shotgun sequence	704098..704535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKBV010000046.1 Salmonella enterica strain PNUSAS365604 SAMN36696365-rid18857073.guided.30, whole genome shotgun sequence	12448..12885	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKBV010000028.1 Salmonella enterica strain PNUSAS365604 SAMN36696365-rid18857073.denovo.29, whole genome shotgun sequence	6829..7471	enterobacteriales	IncFII(S)	100	262 / 262	ABNKBV010000033.1 Salmonella enterica strain PNUSAS365604 SAMN36696365-rid18857073.denovo.36, whole genome shotgun sequence	3392..3653																																																avrA	ABNKBV010000003.1	26040..26909	99.54	870	0						
GCA_032388455.1_PDT001826214.1_genomic.fna	Salmonella_enterica	0.5229	527.231 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKBY010000001.1 Salmonella enterica strain PNUSAS365544 SAMN36696351-rid18857923.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKBY010000030.1 Salmonella enterica strain PNUSAS365544 SAMN36696351-rid18857923.guided.20, whole genome shotgun sequence	2641..3078	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKBY010000003.1	150877..151746	99.655	870	0						
GCA_032388465.1_PDT001826212.1_genomic.fna	Salmonella_enterica	0.5213	331.92 KB	6	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNKBZ010000001.1 Salmonella enterica strain PNUSAS365502 SAMN36696308-rid18854163.denovo.01, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNKBZ010000054.1 Salmonella enterica strain PNUSAS365502 SAMN36696308-rid18854163.guided.36, whole genome shotgun sequence	3342..3779	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKBZ010000012.1	101941..102810	99.655	870	0						
GCA_032388495.1_PDT001826210.1_genomic.fna	Salmonella_enterica	0.5215	238.813 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKCB010000001.1 Salmonella enterica strain PNUSAS365512 SAMN36696298-rid18855513.denovo.01, whole genome shotgun sequence	145585..146022	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKCB010000037.1 Salmonella enterica strain PNUSAS365512 SAMN36696298-rid18855513.denovo.41, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKCB010000037.1 Salmonella enterica strain PNUSAS365512 SAMN36696298-rid18855513.denovo.41, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNKCB010000054.1 Salmonella enterica strain PNUSAS365512 SAMN36696298-rid18855513.guided.22, whole genome shotgun sequence	21451..21888	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKCB010000057.1 Salmonella enterica strain PNUSAS365512 SAMN36696298-rid18855513.guided.40, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKCB010000057.1 Salmonella enterica strain PNUSAS365512 SAMN36696298-rid18855513.guided.40, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNKCB010000043.1 Salmonella enterica strain PNUSAS365512 SAMN36696298-rid18855513.denovo.48, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNKCB010000058.1 Salmonella enterica strain PNUSAS365512 SAMN36696298-rid18855513.guided.47, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNKCB010000037.1 Salmonella enterica strain PNUSAS365512 SAMN36696298-rid18855513.denovo.41, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNKCB010000057.1 Salmonella enterica strain PNUSAS365512 SAMN36696298-rid18855513.guided.40, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942																																																																																																																																																																																																																																																																																																																																																																																																																																																																																	avrA	ABNKCB010000002.1	434309..435178	99.885	870	0						
GCA_032388515.1_PDT001826209.1_genomic.fna	Salmonella_enterica	0.5208	302.608 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pXuzhou21	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNKCA010000006.1 Salmonella enterica strain PNUSAS365610 SAMN36696362-rid18857913.denovo.06, whole genome shotgun sequence	231350..231787	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNKCA010000037.1 Salmonella enterica strain PNUSAS365610 SAMN36696362-rid18857913.guided.32, whole genome shotgun sequence	545..982	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pXuzhou21	91.92	718 / 720	ABNKCA010000022.1 Salmonella enterica strain PNUSAS365610 SAMN36696362-rid18857913.denovo.22, whole genome shotgun sequence	16644..17361																																																						avrA	ABNKCA010000001.1	39604..40473	98.966	870	0						
GCA_032388525.1_PDT001826208.1_genomic.fna	Salmonella_enterica	0.5218	320.3 KB	6	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(S),IncFII(SARC14)	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKCC010000012.1 Salmonella enterica strain PNUSAS365555 SAMN36696340-rid18857013.denovo.12, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKCC010000032.1 Salmonella enterica strain PNUSAS365555 SAMN36696340-rid18857013.guided.28, whole genome shotgun sequence	2184..2621	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	93.63	251 / 262	ABNKCC010000015.1 Salmonella enterica strain PNUSAS365555 SAMN36696340-rid18857013.denovo.15, whole genome shotgun sequence	75692..75939	enterobacteriales	IncFII(SARC14)	95.07	446 / 445	ABNKCC010000015.1 Salmonella enterica strain PNUSAS365555 SAMN36696340-rid18857013.denovo.15, whole genome shotgun sequence	76199..76643																																																											
GCA_032388555.1_PDT001826202.1_genomic.fna	Salmonella_enterica	0.5224	394.426 KB	5	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKCE010000001.1 Salmonella enterica strain PNUSAS365504 SAMN36696290-rid18855483.denovo.01, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKCE010000031.1 Salmonella enterica strain PNUSAS365504 SAMN36696290-rid18855483.guided.22, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNKCE010000024.1 Salmonella enterica strain PNUSAS365504 SAMN36696290-rid18855483.denovo.27, whole genome shotgun sequence	557..687																																																						avrA	ABNKCE010000014.1	36961..37830	99.425	870	0						
GCA_032388575.1_PDT001826203.1_genomic.fna	Salmonella_enterica	0.5207	249.15 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKCD010000001.1 Salmonella enterica strain PNUSAS365496 SAMN36696302-rid18856993.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKCD010000038.1 Salmonella enterica strain PNUSAS365496 SAMN36696302-rid18856993.guided.24, whole genome shotgun sequence	14362..14799	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKCD010000020.1 Salmonella enterica strain PNUSAS365496 SAMN36696302-rid18856993.denovo.20, whole genome shotgun sequence	6036..6569																																																						avrA	ABNKCD010000009.1	188329..189198	99.425	870	0						
GCA_032388595.1_PDT001826201.1_genomic.fna	Salmonella_enterica	0.5207	396.855 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKCG010000009.1 Salmonella enterica strain PNUSAS365489 SAMN36696271-rid18856983.denovo.09, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKCG010000032.1 Salmonella enterica strain PNUSAS365489 SAMN36696271-rid18856983.guided.20, whole genome shotgun sequence	24531..24968	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKCG010000019.1 Salmonella enterica strain PNUSAS365489 SAMN36696271-rid18856983.denovo.19, whole genome shotgun sequence	34958..35491																																																						avrA	ABNKCG010000004.1	39478..40344	98.966	870	0						
GCA_032388635.1_PDT001826199.1_genomic.fna	Salmonella_enterica	0.5211	492.307 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKCH010000001.1 Salmonella enterica strain PNUSAS365516 SAMN36696280-rid18856973.denovo.01, whole genome shotgun sequence	812465..812902	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKCH010000027.1 Salmonella enterica strain PNUSAS365516 SAMN36696280-rid18856973.guided.21, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNKCH010000016.1 Salmonella enterica strain PNUSAS365516 SAMN36696280-rid18856973.denovo.16, whole genome shotgun sequence	19281..20141	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNKCH010000026.1 Salmonella enterica strain PNUSAS365516 SAMN36696280-rid18856973.guided.20, whole genome shotgun sequence	6409..7269	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKCH010000016.1 Salmonella enterica strain PNUSAS365516 SAMN36696280-rid18856973.denovo.16, whole genome shotgun sequence	53286..53928	enterobacteriales	IncFII(S)	100	262 / 262	ABNKCH010000016.1 Salmonella enterica strain PNUSAS365516 SAMN36696280-rid18856973.denovo.16, whole genome shotgun sequence	4078..4339																																																avrA	ABNKCH010000002.1	552789..553658	99.54	870	0						
GCA_032388655.1_PDT001826197.1_genomic.fna	Salmonella_enterica	0.5222	324.384 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKCJ010000003.1 Salmonella enterica strain PNUSAS365497 SAMN36696286-rid18854153.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKCJ010000043.1 Salmonella enterica strain PNUSAS365497 SAMN36696286-rid18854153.guided.35, whole genome shotgun sequence	2479..2916	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKCJ010000015.1 Salmonella enterica strain PNUSAS365497 SAMN36696286-rid18854153.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNKCJ010000015.1 Salmonella enterica strain PNUSAS365497 SAMN36696286-rid18854153.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNKCJ010000002.1	389076..389944	100	869	0						
GCA_032388675.1_PDT001826193.1_genomic.fna	Salmonella_enterica	0.5212	225.554 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKCK010000002.1 Salmonella enterica strain PNUSAS365486 SAMN36696296-rid18856943.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKCK010000063.1 Salmonella enterica strain PNUSAS365486 SAMN36696296-rid18856943.guided.31, whole genome shotgun sequence	17538..17975	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKCK010000001.1	446611..447479	100	869	0						
GCA_032388695.1_PDT001826194.1_genomic.fna	Salmonella_enterica	0.5206	328.806 KB	5	aroC_162,dnaN_475,hemD_387,hisD_604,purE_517,sucA_6,thrA_16	2194	13:b:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_162	dnaN	100	100	dnaN_475	hemD	100	100	hemD_387	hisD	100	100	hisD_604	purE	100	100	purE_517	sucA	100	100	sucA_6	thrA	100	100	thrA_16	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNKCI010000002.1 Salmonella enterica strain PNUSAS365523 SAMN36696288-rid18857893.denovo.02, whole genome shotgun sequence	148094..148531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNKCI010000039.1 Salmonella enterica strain PNUSAS365523 SAMN36696288-rid18857893.guided.26, whole genome shotgun sequence	14606..15043	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNKCI010000032.1 Salmonella enterica strain PNUSAS365523 SAMN36696288-rid18857893.denovo.35, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNKCI010000042.1 Salmonella enterica strain PNUSAS365523 SAMN36696288-rid18857893.guided.38, whole genome shotgun sequence	606..1250	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNKCI010000032.1 Salmonella enterica strain PNUSAS365523 SAMN36696288-rid18857893.denovo.35, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNKCI010000033.1 Salmonella enterica strain PNUSAS365523 SAMN36696288-rid18857893.denovo.36, whole genome shotgun sequence	829..959		enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNKCI010000034.1 Salmonella enterica strain PNUSAS365523 SAMN36696288-rid18857893.denovo.37, whole genome shotgun sequence	547..675		enterobacteriales	Col440I	90.2	102 / 114	ABNKCI010000042.1 Salmonella enterica strain PNUSAS365523 SAMN36696288-rid18857893.guided.38, whole genome shotgun sequence	1..102		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNKCI010000023.1 Salmonella enterica strain PNUSAS365523 SAMN36696288-rid18857893.denovo.23, whole genome shotgun sequence	19680..19821																											avrA	ABNKCI010000001.1	517452..518321	98.966	870	0						
GCA_032388715.1_PDT001826187.1_genomic.fna	Salmonella_enterica	0.5212	382.677 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNKCM010000001.1 Salmonella enterica strain PNUSAS365494 SAMN36696268-rid18854143.denovo.01, whole genome shotgun sequence	480328..480765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNKCM010000032.1 Salmonella enterica strain PNUSAS365494 SAMN36696268-rid18854143.guided.16, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKCM010000002.1	144854..145723	99.31	870	0						
GCA_032388735.1_PDT001826192.1_genomic.fna	Salmonella_enterica	0.5214	480.935 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKCL010000001.1 Salmonella enterica strain PNUSAS365522 SAMN36696264-rid18855453.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKCL010000023.1 Salmonella enterica strain PNUSAS365522 SAMN36696264-rid18855453.guided.18, whole genome shotgun sequence	9694..10131	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKCL010000015.1 Salmonella enterica strain PNUSAS365522 SAMN36696264-rid18855453.denovo.15, whole genome shotgun sequence	48580..49222	enterobacteriales	IncFII(S)	100	262 / 262	ABNKCL010000015.1 Salmonella enterica strain PNUSAS365522 SAMN36696264-rid18855453.denovo.15, whole genome shotgun sequence	4327..4588																																																avrA	ABNKCL010000002.1	553224..554093	99.54	870	0						
GCA_032388815.1_PDT001826182.1_genomic.fna	Salmonella_enterica	0.521	728.673 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNKCN010000001.1 Salmonella enterica strain PNUSAS365501 SAMN36696270-rid18855413.denovo.01, whole genome shotgun sequence	645015..645452	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNKCN010000015.1 Salmonella enterica strain PNUSAS365501 SAMN36696270-rid18855413.guided.11, whole genome shotgun sequence	30564..31001	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKCN010000004.1	563845..564715	99.656	871	0						
GCA_032388835.1_PDT001826155.1_genomic.fna	Salmonella_enterica	0.5221	597.175 KB	3	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNKCP010000002.1 Salmonella enterica strain PNUSAS365378 SAMN36695422-rid18854103.denovo.02, whole genome shotgun sequence	20549..20986	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNKCP010000024.1 Salmonella enterica strain PNUSAS365378 SAMN36695422-rid18854103.guided.17, whole genome shotgun sequence	290..727	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKCP010000004.1	177654..178522	99.655	869	0						
GCA_032388875.1_PDT001826154.1_genomic.fna	Salmonella_enterica	0.5211	96.666 KB	16	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKCR010000048.1 Salmonella enterica strain PNUSAS365403 SAMN36695442-rid18857843.denovo.48, whole genome shotgun sequence	15432..15869	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKCR010000098.1 Salmonella enterica strain PNUSAS365403 SAMN36695442-rid18857843.guided.62, whole genome shotgun sequence	14990..15427	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNKCR010000083.1 Salmonella enterica strain PNUSAS365403 SAMN36695442-rid18857843.denovo.86, whole genome shotgun sequence	1905..2035																																																						avrA	ABNKCR010000009.1	43674..44543	98.966	870	0						
GCA_032389015.1_PDT001826145.1_genomic.fna	Salmonella_enterica	0.5218	366.952 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKCY010000002.1 Salmonella enterica strain PNUSAS365361 SAMN36695359-rid18855243.denovo.02, whole genome shotgun sequence	383218..383655	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKCY010000031.1 Salmonella enterica strain PNUSAS365361 SAMN36695359-rid18855243.guided.21, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKCY010000007.1	212718..213587	99.195	870	0						
GCA_032389055.1_PDT001826137.1_genomic.fna	Salmonella_enterica	0.5209	309.804 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKDB010000001.1 Salmonella enterica strain PNUSAS365358 SAMN36695364-rid18854083.denovo.01, whole genome shotgun sequence	477459..477896	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKDB010000035.1 Salmonella enterica strain PNUSAS365358 SAMN36695364-rid18854083.guided.25, whole genome shotgun sequence	985..1422	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKDB010000020.1 Salmonella enterica strain PNUSAS365358 SAMN36695364-rid18854083.denovo.20, whole genome shotgun sequence	2465..2998																																																						avrA	ABNKDB010000018.1	39348..40218	99.196	871	0						
GCA_032389355.1_PDT001914792.1_genomic.fna	Salmonella_enterica	0.5201	402.395 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		5	ColRNAI,IncFIB(AP001918),IncFII(S),IncFII(pCoo),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQALF010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759839-rid19603533.denovo.04, whole genome shotgun sequence	155756..156193	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQALF010000039.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759839-rid19603533.guided.20, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQALF010000027.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759839-rid19603533.denovo.30, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFIB(AP001918)	99.27	682 / 682	DAQALF010000020.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759839-rid19603533.denovo.22, whole genome shotgun sequence	22763..23444		enterobacteriales	IncFII(S)	97.71	262 / 262	DAQALF010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759839-rid19603533.denovo.15, whole genome shotgun sequence	63428..63687		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	DAQALF010000017.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759839-rid19603533.denovo.17, whole genome shotgun sequence	12328..12589		enterobacteriales	IncX1	98.66	374 / 374	DAQALF010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759839-rid19603533.denovo.15, whole genome shotgun sequence	24684..25057																											avrA	DAQALF010000001.1	504293..505161	99.655	870	0						
GCA_032389375.1_PDT001914753.1_genomic.fna	Salmonella_enterica	0.5204	421.173 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		5	ColRNAI,IncFIB(AP001918),IncFII(S),IncFII(pCoo),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQALH010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759764-rid19603153.denovo.01, whole genome shotgun sequence	802035..802472	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQALH010000039.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759764-rid19603153.guided.30, whole genome shotgun sequence	456..893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQALH010000026.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759764-rid19603153.denovo.28, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFIB(AP001918)	99.27	682 / 682	DAQALH010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759764-rid19603153.denovo.13, whole genome shotgun sequence	77673..78354		enterobacteriales	IncFII(S)	97.71	262 / 262	DAQALH010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759764-rid19603153.denovo.15, whole genome shotgun sequence	63409..63668		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	DAQALH010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759764-rid19603153.denovo.13, whole genome shotgun sequence	12755..13016		enterobacteriales	IncX1	98.66	374 / 374	DAQALH010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759764-rid19603153.denovo.15, whole genome shotgun sequence	24683..25056																											avrA	DAQALH010000002.1	504312..505180	99.655	870	0						
GCA_032389395.1_PDT001914752.1_genomic.fna	Salmonella_enterica	0.5201	477.658 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		5	ColRNAI,IncFIB(AP001918),IncFII(S),IncFII(pCoo),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQALG010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759763-rid19603143.denovo.01, whole genome shotgun sequence	802054..802491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQALG010000032.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759763-rid19603143.guided.15, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQALG010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759763-rid19603143.denovo.25, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFIB(AP001918)	99.27	682 / 682	DAQALG010000011.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759763-rid19603143.denovo.11, whole genome shotgun sequence	80585..81266		enterobacteriales	IncFII(S)	97.71	262 / 262	DAQALG010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759763-rid19603143.denovo.14, whole genome shotgun sequence	63427..63686		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	DAQALG010000011.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759763-rid19603143.denovo.11, whole genome shotgun sequence	12333..12594		enterobacteriales	IncX1	98.66	374 / 374	DAQALG010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759763-rid19603143.denovo.14, whole genome shotgun sequence	24683..25056																											avrA	DAQALG010000002.1	504299..505167	99.655	870	0						
GCA_032389415.1_PDT001914742.1_genomic.fna	Salmonella_enterica	0.5209	384.465 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQALK010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759750-rid19603043.denovo.01, whole genome shotgun sequence	802055..802492	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQALK010000037.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759750-rid19603043.guided.22, whole genome shotgun sequence	5473..5910	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQALK010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759750-rid19603043.denovo.27, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQALK010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759750-rid19603043.denovo.15, whole genome shotgun sequence	63425..63684		enterobacteriales	IncX1	98.66	374 / 374	DAQALK010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759750-rid19603043.denovo.15, whole genome shotgun sequence	24684..25057																																									avrA	DAQALK010000007.1	173652..174520	99.655	870	0						
GCA_032389455.1_PDT001914745.1_genomic.fna	Salmonella_enterica	0.5209	441.535 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQALI010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759755-rid19603073.denovo.01, whole genome shotgun sequence	802055..802492	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQALI010000034.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759755-rid19603073.guided.27, whole genome shotgun sequence	48..485	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQALI010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759755-rid19603073.denovo.24, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQALI010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759755-rid19603073.denovo.13, whole genome shotgun sequence	63425..63684		enterobacteriales	IncX1	98.66	374 / 374	DAQALI010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759755-rid19603073.denovo.13, whole genome shotgun sequence	24684..25057																																									avrA	DAQALI010000002.1	504304..505172	99.655	870	0						
GCA_032389475.1_PDT001914733.1_genomic.fna	Salmonella_enterica	0.5209	401.59 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQALJ010000002.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759693-rid19602963.denovo.02, whole genome shotgun sequence	286403..286840	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQALJ010000035.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759693-rid19602963.guided.29, whole genome shotgun sequence	690..1127	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQALJ010000026.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759693-rid19602963.denovo.28, whole genome shotgun sequence	358..488	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQALJ010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759693-rid19602963.denovo.15, whole genome shotgun sequence	63379..63638		enterobacteriales	IncX1	98.66	374 / 374	DAQALJ010000015.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759693-rid19602963.denovo.15, whole genome shotgun sequence	24675..25048																																									avrA	DAQALJ010000001.1	504180..505048	99.655	870	0						
GCA_032389495.1_PDT001914709.1_genomic.fna	Salmonella_enterica	0.5217	151.366 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKDE010000012.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310147 SAMN37668600-rid19602823.denovo.12, whole genome shotgun sequence	11319..11756	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKDE010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310147 SAMN37668600-rid19602823.denovo.46, whole genome shotgun sequence	22619..23410	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKDE010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310147 SAMN37668600-rid19602823.denovo.46, whole genome shotgun sequence	22619..23410	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNKDE010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310147 SAMN37668600-rid19602823.denovo.73, whole genome shotgun sequence	93..908	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	aac(6')-Iaa	97.49	438/438	ABNKDE010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310147 SAMN37668600-rid19602823.guided.32, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKDE010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310147 SAMN37668600-rid19602823.guided.55, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKDE010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310147 SAMN37668600-rid19602823.guided.55, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNKDE010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310147 SAMN37668600-rid19602823.guided.71, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	sul1	100	840/840	ABNKDE010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310147 SAMN37668600-rid19602823.denovo.46, whole genome shotgun sequence	21275..22114	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKDE010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310147 SAMN37668600-rid19602823.guided.55, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKDE010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310147 SAMN37668600-rid19602823.denovo.46, whole genome shotgun sequence	7559..8758	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKDE010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310147 SAMN37668600-rid19602823.guided.51, whole genome shotgun sequence	5819..7018	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKDE010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310147 SAMN37668600-rid19602823.denovo.47, whole genome shotgun sequence	9109..9668																																																						avrA	ABNKDE010000016.1	94091..94960	99.655	870	0						
GCA_032389595.1_PDT001826116.1_genomic.fna	Salmonella_enterica	0.5225	73.715 KB	20	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	-:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	-	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:l,v:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKDH010000019.1 Salmonella enterica strain PNUSAS365399 SAMN36695448-rid18856703.denovo.019, whole genome shotgun sequence	15398..15835	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKDH010000122.1 Salmonella enterica strain PNUSAS365399 SAMN36695448-rid18856703.guided.065, whole genome shotgun sequence	14510..14947	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKDH010000014.1	81932..82800	98.851	870	0						
GCA_032389635.1_PDT001826112.1_genomic.fna	Salmonella_enterica	0.5217	130.777 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKDG010000004.1 Salmonella enterica strain PNUSAS365401 SAMN36695446-rid18856683.denovo.04, whole genome shotgun sequence	52463..52900	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKDG010000077.1 Salmonella enterica strain PNUSAS365401 SAMN36695446-rid18856683.guided.55, whole genome shotgun sequence	9243..9680	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKDG010000054.1 Salmonella enterica strain PNUSAS365401 SAMN36695446-rid18856683.denovo.54, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNKDG010000060.1 Salmonella enterica strain PNUSAS365401 SAMN36695446-rid18856683.denovo.62, whole genome shotgun sequence	3428..3689																																																avrA	ABNKDG010000003.1	43540..44409	99.54	870	0						
GCA_032389655.1_PDT001826102.1_genomic.fna	Salmonella_enterica	0.5215	382.958 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKDK010000002.1 Salmonella enterica strain PNUSAS365382 SAMN36695425-rid18856643.denovo.02, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKDK010000038.1 Salmonella enterica strain PNUSAS365382 SAMN36695425-rid18856643.guided.26, whole genome shotgun sequence	2526..2963	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKDK010000008.1	192372..193240	99.195	870	0						
GCA_032389675.1_PDT001826107.1_genomic.fna	Salmonella_enterica	0.5213	234.888 KB	7	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKDI010000002.1 Salmonella enterica strain PNUSAS365418 SAMN36695506-rid18857763.denovo.02, whole genome shotgun sequence	339727..340164	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKDI010000048.1 Salmonella enterica strain PNUSAS365418 SAMN36695506-rid18857763.guided.24, whole genome shotgun sequence	248..685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKDI010000003.1	39428..40297	99.195	870	0						
GCA_032389695.1_PDT001826101.1_genomic.fna	Salmonella_enterica	0.5224	231.914 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKDL010000001.1 Salmonella enterica strain PNUSAS365359 SAMN36695360-rid18856633.denovo.01, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKDL010000042.1 Salmonella enterica strain PNUSAS365359 SAMN36695360-rid18856633.guided.19, whole genome shotgun sequence	40046..40483	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKDL010000008.1	39475..40344	98.966	870	0						
GCA_032389735.1_PDT001826097.1_genomic.fna	Salmonella_enterica	0.5214	304.376 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKDN010000001.1 Salmonella enterica strain PNUSAS365392 SAMN36695434-rid18857743.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKDN010000036.1 Salmonella enterica strain PNUSAS365392 SAMN36695434-rid18857743.guided.28, whole genome shotgun sequence	1310..1747	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKDN010000024.1 Salmonella enterica strain PNUSAS365392 SAMN36695434-rid18857743.denovo.24, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNKDN010000025.1 Salmonella enterica strain PNUSAS365392 SAMN36695434-rid18857743.denovo.27, whole genome shotgun sequence	3393..3654																																																avrA	ABNKDN010000002.1	553627..554496	99.54	870	0						
GCA_032389795.1_PDT001826090.1_genomic.fna	Salmonella_enterica	0.522	178.111 KB	9	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,IncFIB(pHCM2)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNKDP010000001.1 Salmonella enterica strain PNUSAS365380 SAMN36695438-rid18854043.denovo.01, whole genome shotgun sequence	177149..177586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNKDP010000052.1 Salmonella enterica strain PNUSAS365380 SAMN36695438-rid18854043.guided.39, whole genome shotgun sequence	9229..9666	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	ABNKDP010000044.1 Salmonella enterica strain PNUSAS365380 SAMN36695438-rid18854043.denovo.47, whole genome shotgun sequence	3345..3457	enterobacteriales	IncFIB(pHCM2)	97.29	884 / 875	ABNKDP010000018.1 Salmonella enterica strain PNUSAS365380 SAMN36695438-rid18854043.denovo.18, whole genome shotgun sequence	11561..12444																																																avrA	ABNKDP010000008.1	109070..109939	99.77	870	0						
GCA_032389815.1_PDT001826089.1_genomic.fna	Salmonella_enterica	0.5222	397.888 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNKDR010000001.1 Salmonella enterica strain PNUSAS365386 SAMN36695436-rid18856583.denovo.01, whole genome shotgun sequence	458315..458752	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNKDR010000028.1 Salmonella enterica strain PNUSAS365386 SAMN36695436-rid18856583.guided.20, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKDR010000002.1	553810..554679	99.77	870	0						
GCA_032389835.1_PDT001826088.1_genomic.fna	Salmonella_enterica	0.5218	565.067 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKDS010000001.1 Salmonella enterica strain PNUSAS365388 SAMN36695427-rid18855033.denovo.01, whole genome shotgun sequence	486957..487394	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNKDS010000026.1 Salmonella enterica strain PNUSAS365388 SAMN36695427-rid18855033.guided.20, whole genome shotgun sequence	20560..20997	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKDS010000002.1	544613..545481	99.425	870	0						
GCA_032389855.1_PDT001826087.1_genomic.fna	Salmonella_enterica	0.5209	351.05 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKDT010000001.1 Salmonella enterica strain PNUSAS365393 SAMN36695433-rid18857733.denovo.01, whole genome shotgun sequence	414618..415055	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKDT010000032.1 Salmonella enterica strain PNUSAS365393 SAMN36695433-rid18857733.guided.25, whole genome shotgun sequence	1515..1952	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032389895.1_PDT001826085.1_genomic.fna	Salmonella_enterica	0.5205	166.041 KB	9	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKDU010000001.1 Salmonella enterica strain PNUSAS365385 SAMN36695430-rid18855023.denovo.01, whole genome shotgun sequence	232698..233135	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKDU010000074.1 Salmonella enterica strain PNUSAS365385 SAMN36695430-rid18855023.guided.46, whole genome shotgun sequence	5420..5857	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	97.37	152 / 154	ABNKDU010000053.1 Salmonella enterica strain PNUSAS365385 SAMN36695430-rid18855023.denovo.56, whole genome shotgun sequence	967..1118																																																						avrA	ABNKDU010000003.1	159664..160533	99.885	870	0						
GCA_032389915.1_PDT001826083.1_genomic.fna	Salmonella_enterica	0.5235	38.58 KB	36	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNKDV010000063.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323714 SAMN36696873-rid18855013.denovo.063, whole genome shotgun sequence	11314..11751	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNKDV010000219.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323714 SAMN36696873-rid18855013.guided.100, whole genome shotgun sequence	15452..15889	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNKDV010000143.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323714 SAMN36696873-rid18855013.denovo.146, whole genome shotgun sequence	4738..4868	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNKDV010000153.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323714 SAMN36696873-rid18855013.denovo.156, whole genome shotgun sequence	557..687																																																avrA	ABNKDV010000007.1	82934..83803	99.54	870	0						
GCA_032389935.1_PDT001826079.1_genomic.fna	Salmonella_enterica	0.5209	144.531 KB	12	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNKEA010000006.1 Salmonella enterica strain PNUSAS365363 SAMN36695361-rid18856543.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNKEA010000069.1 Salmonella enterica strain PNUSAS365363 SAMN36695361-rid18856543.guided.50, whole genome shotgun sequence	8597..9031	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032389955.1_PDT001826081.1_genomic.fna	Salmonella_enterica	0.5207	161.067 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul2,sul2	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNKDY010000011.1 Salmonella enterica strain PNUSAS365389 SAMN36695426-rid18856553.denovo.11, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKDY010000050.1 Salmonella enterica strain PNUSAS365389 SAMN36695426-rid18856553.denovo.54, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNKDY010000050.1 Salmonella enterica strain PNUSAS365389 SAMN36695426-rid18856553.denovo.54, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	ABNKDY010000066.1 Salmonella enterica strain PNUSAS365389 SAMN36695426-rid18856553.guided.48, whole genome shotgun sequence	6150..6584	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKDY010000070.1 Salmonella enterica strain PNUSAS365389 SAMN36695426-rid18856553.guided.65, whole genome shotgun sequence	891..1727	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNKDY010000070.1 Salmonella enterica strain PNUSAS365389 SAMN36695426-rid18856553.guided.65, whole genome shotgun sequence	88..891	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNKDY010000058.1 Salmonella enterica strain PNUSAS365389 SAMN36695426-rid18856553.denovo.63, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNKDY010000071.1 Salmonella enterica strain PNUSAS365389 SAMN36695426-rid18856553.guided.67, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	ABNKDY010000048.1 Salmonella enterica strain PNUSAS365389 SAMN36695426-rid18856553.denovo.50, whole genome shotgun sequence	223..882	Chloramphenicol	V00622	catA1	99.85	660/660	ABNKDY010000068.1 Salmonella enterica strain PNUSAS365389 SAMN36695426-rid18856553.guided.53, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul2	100	816/816	ABNKDY010000050.1 Salmonella enterica strain PNUSAS365389 SAMN36695426-rid18856553.denovo.54, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNKDY010000069.1 Salmonella enterica strain PNUSAS365389 SAMN36695426-rid18856553.guided.59, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032390015.1_PDT001826074.1_genomic.fna	Salmonella_enterica	0.5223	393.68 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNKDZ010000001.1 Salmonella enterica strain PNUSAS365383 SAMN36695435-rid18856523.denovo.01, whole genome shotgun sequence	458316..458753	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNKDZ010000030.1 Salmonella enterica strain PNUSAS365383 SAMN36695435-rid18856523.guided.22, whole genome shotgun sequence	7599..8036	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKDZ010000002.1	553810..554679	99.77	870	0						
GCA_032390235.1_PDT001826031.1_genomic.fna	Salmonella_enterica	0.5226	54.003 KB	28	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	-:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	-	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,s,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKEN010000019.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323711 SAMN36696870-rid18854793.denovo.019, whole genome shotgun sequence	12497..12934	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKEN010000193.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323711 SAMN36696870-rid18854793.guided.066, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKEN010000006.1	99720..100589	98.851	870	0						
GCA_032390255.1_PDT001826032.1_genomic.fna	Salmonella_enterica	0.5218	46.442 KB	31	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	-:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	-	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKEM010000014.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323713 SAMN36696872-rid18857643.denovo.014, whole genome shotgun sequence	52362..52799	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKEM010000205.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323713 SAMN36696872-rid18857643.guided.120, whole genome shotgun sequence	7383..7820	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNKEM010000077.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323713 SAMN36696872-rid18857643.denovo.077, whole genome shotgun sequence	4771..5193	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNKEM010000206.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323713 SAMN36696872-rid18857643.guided.130, whole genome shotgun sequence	4802..5224	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKEM010000009.1	81797..82666	99.195	870	0						
GCA_032390275.1_PDT001826030.1_genomic.fna	Salmonella_enterica	0.5223	90.049 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKEO010000019.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323303 SAMN36696563-rid18854783.denovo.019, whole genome shotgun sequence	75554..75991	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKEO010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323303 SAMN36696563-rid18854783.denovo.056, whole genome shotgun sequence	22844..23635	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKEO010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323303 SAMN36696563-rid18854783.denovo.056, whole genome shotgun sequence	22844..23635	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNKEO010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323303 SAMN36696563-rid18854783.guided.057, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKEO010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323303 SAMN36696563-rid18854783.guided.077, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKEO010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323303 SAMN36696563-rid18854783.guided.077, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNKEO010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323303 SAMN36696563-rid18854783.denovo.056, whole genome shotgun sequence	21500..22339	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKEO010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323303 SAMN36696563-rid18854783.guided.077, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKEO010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323303 SAMN36696563-rid18854783.denovo.056, whole genome shotgun sequence	7784..8983	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKEO010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323303 SAMN36696563-rid18854783.guided.078, whole genome shotgun sequence	5821..7020	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKEO010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323303 SAMN36696563-rid18854783.denovo.075, whole genome shotgun sequence	8460..9019																																																						avrA	ABNKEO010000003.1	105427..106296	99.655	870	0						
GCA_032390315.1_PDT001826022.1_genomic.fna	Salmonella_enterica	0.521	490.178 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKES010000006.1 Salmonella enterica strain PNUSAS365198 SAMN36694947-rid18857633.denovo.06, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKES010000032.1 Salmonella enterica strain PNUSAS365198 SAMN36694947-rid18857633.guided.28, whole genome shotgun sequence	540..977	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKES010000021.1 Salmonella enterica strain PNUSAS365198 SAMN36694947-rid18857633.denovo.22, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNKES010000022.1 Salmonella enterica strain PNUSAS365198 SAMN36694947-rid18857633.denovo.23, whole genome shotgun sequence	3436..3697																																																avrA	ABNKES010000001.1	585363..586232	99.54	870	0						
GCA_032390335.1_PDT001826025.1_genomic.fna	Salmonella_enterica	0.523	48.83 KB	29	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNKEQ010000018.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323709 SAMN36696566-rid18853983.denovo.018, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNKEQ010000163.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323709 SAMN36696566-rid18853983.guided.080, whole genome shotgun sequence	9386..9823	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNKEQ010000129.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323709 SAMN36696566-rid18853983.denovo.132, whole genome shotgun sequence	557..687																																																						avrA	ABNKEQ010000025.1	43539..44408	99.54	870	0						
GCA_032390355.1_PDT001826024.1_genomic.fna	Salmonella_enterica	0.5187	148.275 KB	9	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKER010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323710 SAMN36696569-rid18856373.denovo.12, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKER010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323710 SAMN36696569-rid18856373.denovo.33, whole genome shotgun sequence	30980..31816	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNKER010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323710 SAMN36696569-rid18856373.denovo.33, whole genome shotgun sequence	31816..32619	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNKER010000067.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323710 SAMN36696569-rid18856373.guided.35, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKER010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323710 SAMN36696569-rid18856373.guided.57, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNKER010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323710 SAMN36696569-rid18856373.guided.57, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNKER010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323710 SAMN36696569-rid18856373.denovo.55, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNKER010000069.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323710 SAMN36696569-rid18856373.guided.53, whole genome shotgun sequence	4113..5318	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNKER010000038.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323710 SAMN36696569-rid18856373.denovo.40, whole genome shotgun sequence	1890..2571	enterobacteriales	IncFII	96.95	262 / 261	ABNKER010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323710 SAMN36696569-rid18856373.denovo.33, whole genome shotgun sequence	30096..30357		enterobacteriales	IncFII	96.95	262 / 261	ABNKER010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323710 SAMN36696569-rid18856373.guided.57, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNKER010000035.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323710 SAMN36696569-rid18856373.denovo.37, whole genome shotgun sequence	17147..17288		enterobacteriales	IncX1	100	373 / 373	ABNKER010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323710 SAMN36696569-rid18856373.denovo.48, whole genome shotgun sequence	2153..2525																											avrA	ABNKER010000029.1	39484..40353	99.655	870	0						
GCA_032390425.1_PDT001826017.1_genomic.fna	Salmonella_enterica	0.522	437.222 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKEU010000001.1 Salmonella enterica strain PNUSAS365202 SAMN36694954-rid18856353.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKEU010000026.1 Salmonella enterica strain PNUSAS365202 SAMN36694954-rid18856353.guided.18, whole genome shotgun sequence	22095..22532	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNKEU010000020.1 Salmonella enterica strain PNUSAS365202 SAMN36694954-rid18856353.denovo.23, whole genome shotgun sequence	547..675																																																						avrA	ABNKEU010000008.1	39350..40219	98.966	870	0						
GCA_032390455.1_PDT001826015.1_genomic.fna	Salmonella_enterica	0.5238	49.792 KB	32	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	4	aac(6')-Iaa,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),ColRNAI,IncQ1,IncQ1	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNKEV010000058.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323729 SAMN36696452-rid18853963.denovo.058, whole genome shotgun sequence	11341..11778	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	671/804	ABNKEV010000118.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323729 SAMN36696452-rid18853963.denovo.122, whole genome shotgun sequence	8803..9473	Streptomycin	AF321551	aac(6')-Iaa	98.17	438/438	ABNKEV010000178.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323729 SAMN36696452-rid18853963.guided.059, whole genome shotgun sequence	14766..15203	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	695/804	ABNKEV010000181.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323729 SAMN36696452-rid18853963.guided.121, whole genome shotgun sequence	7879..8573	Streptomycin	AF321551	sul2	100	816/816	ABNKEV010000118.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323729 SAMN36696452-rid18853963.denovo.122, whole genome shotgun sequence	85..900	Sulfamethoxazole	FN995456	sul2	100	816/816	ABNKEV010000181.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323729 SAMN36696452-rid18853963.guided.121, whole genome shotgun sequence	7003..7818	Sulfamethoxazole	FN995456	tet(A)	99.92	1200/1200	ABNKEV010000118.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323729 SAMN36696452-rid18853963.denovo.122, whole genome shotgun sequence	6703..7902	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNKEV010000181.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323729 SAMN36696452-rid18853963.guided.121, whole genome shotgun sequence	1..1200	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNKEV010000135.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323729 SAMN36696452-rid18853963.denovo.139, whole genome shotgun sequence	239..369	enterobacteriales	ColRNAI	90.08	131 / 130	ABNKEV010000138.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323729 SAMN36696452-rid18853963.denovo.142, whole genome shotgun sequence	3981..4111		enterobacteriales	IncQ1	100	796 / 796	ABNKEV010000118.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323729 SAMN36696452-rid18853963.denovo.122, whole genome shotgun sequence	2240..3035		enterobacteriales	IncQ1	100	796 / 796	ABNKEV010000181.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323729 SAMN36696452-rid18853963.guided.121, whole genome shotgun sequence	4868..5663																																		avrA	ABNKEV010000015.1	61400..62269	99.425	870	0						
GCA_032390475.1_PDT001826013.1_genomic.fna	Salmonella_enterica	0.5211	412.182 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKEW010000001.1 Salmonella enterica strain PNUSAS365201 SAMN36694950-rid18853953.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKEW010000029.1 Salmonella enterica strain PNUSAS365201 SAMN36694950-rid18853953.guided.23, whole genome shotgun sequence	8806..9243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKEW010000020.1 Salmonella enterica strain PNUSAS365201 SAMN36694950-rid18853953.denovo.21, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNKEW010000021.1 Salmonella enterica strain PNUSAS365201 SAMN36694950-rid18853953.denovo.24, whole genome shotgun sequence	3390..3651																																																avrA	ABNKEW010000002.1	585348..586217	99.54	870	0						
GCA_032390495.1_PDT001825901.1_genomic.fna	Salmonella_enterica	0.5227	355.434 KB	6	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_19,thrA_12	582	8:z4,z23:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	z4,z23	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Chailey		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKEY010000001.1 Salmonella enterica strain PNUSAS365203 SAMN36694957-rid18853763.denovo.01, whole genome shotgun sequence	487972..488409	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKEY010000027.1 Salmonella enterica strain PNUSAS365203 SAMN36694957-rid18853763.guided.24, whole genome shotgun sequence	1536..1973	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKEY010000007.1	140159..141027	99.425	870	0						
GCA_032390535.1_PDT001825899.1_genomic.fna	Salmonella_enterica	0.5214	334.219 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKEZ010000001.1 Salmonella enterica strain PNUSAS365192 SAMN36694951-rid18853743.denovo.01, whole genome shotgun sequence	199594..200031	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKEZ010000030.1 Salmonella enterica strain PNUSAS365192 SAMN36694951-rid18853743.guided.23, whole genome shotgun sequence	10577..11014	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKEZ010000022.1 Salmonella enterica strain PNUSAS365192 SAMN36694951-rid18853743.denovo.24, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNKEZ010000019.1 Salmonella enterica strain PNUSAS365192 SAMN36694951-rid18853743.denovo.19, whole genome shotgun sequence	37086..37347																																																avrA	ABNKEZ010000004.1	132198..133067	99.54	870	0						
GCA_032390545.1_PDT001825896.1_genomic.fna	Salmonella_enterica	0.5234	40.109 KB	38	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKFB010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323727 SAMN36696455-rid18853713.denovo.062, whole genome shotgun sequence	12484..12921	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKFB010000233.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323727 SAMN36696455-rid18853713.guided.109, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKFB010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323727 SAMN36696455-rid18853713.denovo.181, whole genome shotgun sequence	891..1450																																																						avrA	ABNKFB010000013.1	61403..62272	99.655	870	0						
GCA_032390575.1_PDT001825894.1_genomic.fna	Salmonella_enterica	0.5215	216.912 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKFA010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323726 SAMN36696440-rid18853693.denovo.01, whole genome shotgun sequence	193590..194027	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKFA010000050.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323726 SAMN36696440-rid18853693.guided.27, whole genome shotgun sequence	24926..25363	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKFA010000035.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323726 SAMN36696440-rid18853693.denovo.37, whole genome shotgun sequence	6840..7482	enterobacteriales	IncFII(S)	100	262 / 262	ABNKFA010000037.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323726 SAMN36696440-rid18853693.denovo.40, whole genome shotgun sequence	5032..5293																																																avrA	ABNKFA010000005.1	149524..150393	99.54	870	0						
GCA_032390595.1_PDT001825893.1_genomic.fna	Salmonella_enterica	0.5219	375.533 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKFC010000001.1 Salmonella enterica strain PNUSAS365197 SAMN36694952-rid18853683.denovo.01, whole genome shotgun sequence	460175..460612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.96	392/438	ABNKFC010000037.1 Salmonella enterica strain PNUSAS365197 SAMN36694952-rid18853683.guided.31, whole genome shotgun sequence	1..392	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNKFC010000015.1 Salmonella enterica strain PNUSAS365197 SAMN36694952-rid18853683.denovo.15, whole genome shotgun sequence	65949..67154	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNKFC010000033.1 Salmonella enterica strain PNUSAS365197 SAMN36694952-rid18853683.guided.25, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNKFC010000015.1 Salmonella enterica strain PNUSAS365197 SAMN36694952-rid18853683.denovo.15, whole genome shotgun sequence	73540..73681	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNKFC010000033.1 Salmonella enterica strain PNUSAS365197 SAMN36694952-rid18853683.guided.25, whole genome shotgun sequence	3169..3310																																																avrA	ABNKFC010000002.1	149913..150782	99.655	870	0						
GCA_032390615.1_PDT001825892.1_genomic.fna	Salmonella_enterica	0.5207	97.25 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFII(29),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKFD010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323723 SAMN36696443-rid18853673.denovo.012, whole genome shotgun sequence	84702..85139	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKFD010000109.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323723 SAMN36696443-rid18853673.guided.052, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(29)	97.3	259 / 259	ABNKFD010000035.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323723 SAMN36696443-rid18853673.denovo.035, whole genome shotgun sequence	59291..59549	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNKFD010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323723 SAMN36696443-rid18853673.denovo.043, whole genome shotgun sequence	28207..28348		enterobacteriales	IncX1	100	373 / 373	ABNKFD010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323723 SAMN36696443-rid18853673.denovo.083, whole genome shotgun sequence	2153..2525																																									avrA	ABNKFD010000042.1	39484..40353	99.655	870	0						
GCA_032390635.1_PDT001825890.1_genomic.fna	Salmonella_enterica	0.5229	51.084 KB	27	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	-:z10:e,n,x	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	-	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNKFE010000064.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323725 SAMN36696439-rid18853653.denovo.065, whole genome shotgun sequence	11353..11790	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKFE010000112.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323725 SAMN36696439-rid18853653.denovo.116, whole genome shotgun sequence	5974..6810	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNKFE010000112.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323725 SAMN36696439-rid18853653.denovo.116, whole genome shotgun sequence	6810..7612	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNKFE010000112.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323725 SAMN36696439-rid18853653.denovo.116, whole genome shotgun sequence	6810..7613	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNKFE010000112.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323725 SAMN36696439-rid18853653.denovo.116, whole genome shotgun sequence	6810..7613	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNKFE010000112.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323725 SAMN36696439-rid18853653.denovo.116, whole genome shotgun sequence	6810..7613	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNKFE010000159.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323725 SAMN36696439-rid18853653.guided.064, whole genome shotgun sequence	14122..14559	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKFE010000162.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323725 SAMN36696439-rid18853653.guided.115, whole genome shotgun sequence	1512..2348	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNKFE010000162.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323725 SAMN36696439-rid18853653.guided.115, whole genome shotgun sequence	710..1512	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNKFE010000162.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323725 SAMN36696439-rid18853653.guided.115, whole genome shotgun sequence	709..1512	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNKFE010000162.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323725 SAMN36696439-rid18853653.guided.115, whole genome shotgun sequence	709..1512	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNKFE010000162.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323725 SAMN36696439-rid18853653.guided.115, whole genome shotgun sequence	709..1512	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNKFE010000132.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323725 SAMN36696439-rid18853653.denovo.136, whole genome shotgun sequence	805..997																																																						avrA	ABNKFE010000037.1	39546..40415	99.655	870	0						
GCA_032390655.1_PDT001825880.1_genomic.fna	Salmonella_enterica	0.5212	227.968 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKFH010000001.1 Salmonella enterica strain PNUSAS365357 SAMN36694656-rid18853553.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKFH010000032.1 Salmonella enterica strain PNUSAS365357 SAMN36694656-rid18853553.guided.26, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKFH010000023.1 Salmonella enterica strain PNUSAS365357 SAMN36694656-rid18853553.denovo.23, whole genome shotgun sequence	18142..18784	enterobacteriales	IncFII(S)	100	262 / 262	ABNKFH010000023.1 Salmonella enterica strain PNUSAS365357 SAMN36694656-rid18853553.denovo.23, whole genome shotgun sequence	3404..3665																																																avrA	ABNKFH010000002.1	552945..553814	99.54	870	0						
GCA_032390675.1_PDT001825889.1_genomic.fna	Salmonella_enterica	0.5232	66.914 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19*	32*	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	99.8003992015968	100	thrA_19*	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKFF010000011.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323724 SAMN36696444-rid18853643.denovo.011, whole genome shotgun sequence	75501..75938	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKFF010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323724 SAMN36696444-rid18853643.denovo.026, whole genome shotgun sequence	22873..23664	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKFF010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323724 SAMN36696444-rid18853643.denovo.026, whole genome shotgun sequence	22873..23664	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNKFF010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323724 SAMN36696444-rid18853643.guided.064, whole genome shotgun sequence	24926..25363	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKFF010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323724 SAMN36696444-rid18853643.guided.099, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKFF010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323724 SAMN36696444-rid18853643.guided.099, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNKFF010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323724 SAMN36696444-rid18853643.denovo.026, whole genome shotgun sequence	21529..22368	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKFF010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323724 SAMN36696444-rid18853643.guided.099, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKFF010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323724 SAMN36696444-rid18853643.denovo.026, whole genome shotgun sequence	7813..9012	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKFF010000154.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323724 SAMN36696444-rid18853643.guided.095, whole genome shotgun sequence	4056..5255	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKFF010000104.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323724 SAMN36696444-rid18853643.denovo.109, whole genome shotgun sequence	5831..6390																																																						avrA	ABNKFF010000012.1	81363..82232	99.655	870	0						
GCA_032390715.1_PDT001825875.1_genomic.fna	Salmonella_enterica	0.5227	397.608 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKFI010000001.1 Salmonella enterica strain PNUSAS365333 SAMN36694642-rid18853503.denovo.01, whole genome shotgun sequence	170344..170781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKFI010000029.1 Salmonella enterica strain PNUSAS365333 SAMN36694642-rid18853503.guided.23, whole genome shotgun sequence	13846..14283	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032390735.1_PDT001825874.1_genomic.fna	Salmonella_enterica	0.5217	310.922 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA12,aph(3')-Ia,aac(6')-Iaa,aadA12,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	0		2	IncFIB(AP001918),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKFJ010000001.1 Salmonella enterica strain PNUSAS365329 SAMN36694647-rid18853493.denovo.01, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aadA12	100	792/792	ABNKFJ010000029.1 Salmonella enterica strain PNUSAS365329 SAMN36694647-rid18853493.denovo.32, whole genome shotgun sequence	8019..8810	Spectinomycin, Streptomycin	AY665771	aph(3')-Ia	100	816/816	ABNKFJ010000041.1 Salmonella enterica strain PNUSAS365329 SAMN36694647-rid18853493.denovo.48, whole genome shotgun sequence	397..1212	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	EU722351	aac(6')-Iaa	100	438/438	ABNKFJ010000055.1 Salmonella enterica strain PNUSAS365329 SAMN36694647-rid18853493.guided.20, whole genome shotgun sequence	12431..12868	Amikacin, Tobramycin	NC_003197	aadA12	100	792/792	ABNKFJ010000057.1 Salmonella enterica strain PNUSAS365329 SAMN36694647-rid18853493.guided.31, whole genome shotgun sequence	5406..6197	Spectinomycin, Streptomycin	AY665771	aph(3')-Ia	100	816/816	ABNKFJ010000061.1 Salmonella enterica strain PNUSAS365329 SAMN36694647-rid18853493.guided.46, whole genome shotgun sequence	289..1104	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	EU722351	blaTEM-1B	100	861/861	ABNKFJ010000032.1 Salmonella enterica strain PNUSAS365329 SAMN36694647-rid18853493.denovo.35, whole genome shotgun sequence	3706..4566	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNKFJ010000058.1 Salmonella enterica strain PNUSAS365329 SAMN36694647-rid18853493.guided.36, whole genome shotgun sequence	3883..4743	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	ABNKFJ010000029.1 Salmonella enterica strain PNUSAS365329 SAMN36694647-rid18853493.denovo.32, whole genome shotgun sequence	6675..7514	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKFJ010000057.1 Salmonella enterica strain PNUSAS365329 SAMN36694647-rid18853493.guided.31, whole genome shotgun sequence	6702..7541	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKFJ010000035.1 Salmonella enterica strain PNUSAS365329 SAMN36694647-rid18853493.denovo.41, whole genome shotgun sequence	1995..3194	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKFJ010000060.1 Salmonella enterica strain PNUSAS365329 SAMN36694647-rid18853493.guided.40, whole genome shotgun sequence	2036..3235	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNKFJ010000033.1 Salmonella enterica strain PNUSAS365329 SAMN36694647-rid18853493.denovo.38, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII(S)	100	262 / 262	ABNKFJ010000025.1 Salmonella enterica strain PNUSAS365329 SAMN36694647-rid18853493.denovo.26, whole genome shotgun sequence	29426..29687																																																avrA	ABNKFJ010000007.1	94132..95001	99.885	870	0						
GCA_032390755.1_PDT001825873.1_genomic.fna	Salmonella_enterica	0.5212	872.098 KB	2	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNKFK010000001.1 Salmonella enterica strain PNUSAS365332 SAMN36694645-rid18853483.denovo.01, whole genome shotgun sequence	1332214..1332651	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNKFK010000016.1 Salmonella enterica strain PNUSAS365332 SAMN36694645-rid18853483.guided.13, whole genome shotgun sequence	8488..8925	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKFK010000003.1	149711..150580	99.425	870	0						
GCA_032390775.1_PDT001825872.1_genomic.fna	Salmonella_enterica	0.5217	341.897 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKFL010000003.1 Salmonella enterica strain PNUSAS365327 SAMN36694641-rid18853473.denovo.03, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKFL010000042.1 Salmonella enterica strain PNUSAS365327 SAMN36694641-rid18853473.guided.26, whole genome shotgun sequence	10059..10496	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKFL010000016.1 Salmonella enterica strain PNUSAS365327 SAMN36694641-rid18853473.denovo.16, whole genome shotgun sequence	48455..49097	enterobacteriales	IncFII(S)	100	262 / 262	ABNKFL010000016.1 Salmonella enterica strain PNUSAS365327 SAMN36694641-rid18853473.denovo.16, whole genome shotgun sequence	64182..64443																																																avrA	ABNKFL010000004.1	209589..210457	100	869	0						
GCA_032390795.1_PDT001825871.1_genomic.fna	Salmonella_enterica	0.5216	602.584 KB	4	aroC_18,dnaN_7,hemD_47,hisD_9,purE_5,sucA_526,thrA_22	2562	4:z4,z23:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_7	hemD	100	100	hemD_47	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_526	thrA	100	100	thrA_22	4	z4,z23	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanleyville		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKFM010000005.1 Salmonella enterica strain PNUSAS365324 SAMN36694638-rid18853463.denovo.05, whole genome shotgun sequence	384434..384871	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKFM010000027.1 Salmonella enterica strain PNUSAS365324 SAMN36694638-rid18853463.guided.14, whole genome shotgun sequence	33990..34427	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABNKFM010000003.1 Salmonella enterica strain PNUSAS365324 SAMN36694638-rid18853463.denovo.03, whole genome shotgun sequence	397231..397653	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNKFM010000030.1 Salmonella enterica strain PNUSAS365324 SAMN36694638-rid18853463.guided.20, whole genome shotgun sequence	4047..4469	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKFM010000002.1	555294..556163	99.54	870	0						
GCA_032390815.1_PDT001825869.1_genomic.fna	Salmonella_enterica	0.5225	237.189 KB	6	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKFO010000001.1 Salmonella enterica strain PNUSAS365353 SAMN36694651-rid18853443.denovo.01, whole genome shotgun sequence	170344..170781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKFO010000038.1 Salmonella enterica strain PNUSAS365353 SAMN36694651-rid18853443.guided.30, whole genome shotgun sequence	4059..4496	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032390835.1_PDT001825870.1_genomic.fna	Salmonella_enterica	0.5209	430.185 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKFN010000001.1 Salmonella enterica strain PNUSAS365321 SAMN36694630-rid18853453.denovo.01, whole genome shotgun sequence	560094..560531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKFN010000033.1 Salmonella enterica strain PNUSAS365321 SAMN36694630-rid18853453.guided.21, whole genome shotgun sequence	18750..19187	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKFN010000010.1	122091..122959	99.195	870	0						
GCA_032390855.1_PDT001825865.1_genomic.fna	Salmonella_enterica	0.5224	684.717 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pMET)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNKFP010000001.1 Salmonella enterica strain PNUSAS365323 SAMN36694644-rid18853403.denovo.01, whole genome shotgun sequence	996556..996993	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNKFP010000024.1 Salmonella enterica strain PNUSAS365323 SAMN36694644-rid18853403.guided.19, whole genome shotgun sequence	470..907	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pMET)	98.27	577 / 577	ABNKFP010000016.1 Salmonella enterica strain PNUSAS365323 SAMN36694644-rid18853403.denovo.17, whole genome shotgun sequence	28348..28924																																																						avrA	ABNKFP010000003.1	543741..544610	99.54	870	0						
GCA_032390875.1_PDT001825864.1_genomic.fna	Salmonella_enterica	0.5205	382.203 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKFQ010000001.1 Salmonella enterica strain PNUSAS365322 SAMN36694621-rid18853393.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKFQ010000020.1 Salmonella enterica strain PNUSAS365322 SAMN36694621-rid18853393.guided.12, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032390895.1_PDT001825863.1_genomic.fna	Salmonella_enterica	0.5211	356.367 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKFR010000002.1 Salmonella enterica strain PNUSAS365356 SAMN36694655-rid18853383.denovo.02, whole genome shotgun sequence	182412..182849	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKFR010000028.1 Salmonella enterica strain PNUSAS365356 SAMN36694655-rid18853383.guided.24, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032390915.1_PDT001825862.1_genomic.fna	Salmonella_enterica	0.5214	284.116 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKFS010000001.1 Salmonella enterica strain PNUSAS365355 SAMN36694654-rid18853373.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKFS010000038.1 Salmonella enterica strain PNUSAS365355 SAMN36694654-rid18853373.guided.32, whole genome shotgun sequence	4705..5142	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKFS010000028.1 Salmonella enterica strain PNUSAS365355 SAMN36694654-rid18853373.denovo.28, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNKFS010000030.1 Salmonella enterica strain PNUSAS365355 SAMN36694654-rid18853373.denovo.31, whole genome shotgun sequence	3366..3627																																																avrA	ABNKFS010000002.1	132356..133225	99.54	870	0						
GCA_032390935.1_PDT001825859.1_genomic.fna	Salmonella_enterica	0.5207	222.569 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaTEM-1B,blaCARB-2,blaTEM-1B,blaCARB-2,floR,floR,sul2,sul2,sul1,tet(G),tet(G),dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKFU010000003.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.denovo.03, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNKFU010000054.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.denovo.63, whole genome shotgun sequence	17..796	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNKFU010000064.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.guided.34, whole genome shotgun sequence	7954..8391	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNKFU010000070.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.guided.56, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaTEM-1B	100	861/861	ABNKFU010000018.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.denovo.18, whole genome shotgun sequence	80500..81360	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCARB-2	100	867/867	ABNKFU010000046.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.denovo.53, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaTEM-1B	100	861/861	ABNKFU010000063.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.guided.31, whole genome shotgun sequence	121..981	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCARB-2	100	867/867	ABNKFU010000069.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.guided.50, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNKFU010000038.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.denovo.43, whole genome shotgun sequence	5127..6341	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNKFU010000067.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.guided.42, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNKFU010000018.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.denovo.18, whole genome shotgun sequence	74862..75677	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNKFU010000063.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.guided.31, whole genome shotgun sequence	5804..6619	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNKFU010000068.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.guided.46, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNKFU010000038.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.denovo.43, whole genome shotgun sequence	3015..4190	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNKFU010000067.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.guided.42, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140	dfrA1	99.79	474/474	ABNKFU010000018.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.denovo.18, whole genome shotgun sequence	85450..85923	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNKFU010000018.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.denovo.18, whole genome shotgun sequence	85450..85923	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNKFU010000018.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.denovo.18, whole genome shotgun sequence	85450..85923	Trimethoprim	X00926	dfrA1	99.79	474/474	ABNKFU010000071.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.guided.59, whole genome shotgun sequence	58..531	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNKFU010000071.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.guided.59, whole genome shotgun sequence	58..531	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNKFU010000071.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.guided.59, whole genome shotgun sequence	58..531	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																									enterobacteriales	IncFIB(S)	100	643 / 643	ABNKFU010000015.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.denovo.15, whole genome shotgun sequence	48487..49129	enterobacteriales	IncFII(S)	100	262 / 262	ABNKFU010000015.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.denovo.15, whole genome shotgun sequence	64214..64475		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNKFU010000033.1 Salmonella enterica strain PNUSAS365318 SAMN36694628-rid18853343.denovo.35, whole genome shotgun sequence	7041..7182																																									avrA	ABNKFU010000001.1	506470..507339	99.885	870	0						
GCA_032390955.1_PDT001825860.1_genomic.fna	Salmonella_enterica	0.522	185.107 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKFT010000001.1 Salmonella enterica strain PNUSAS365352 SAMN36694652-rid18853353.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKFT010000056.1 Salmonella enterica strain PNUSAS365352 SAMN36694652-rid18853353.guided.38, whole genome shotgun sequence	5541..5978	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKFT010000004.1	165192..166060	99.77	870	0						
GCA_032391015.1_PDT001825836.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKFX010000001.1 Salmonella enterica strain PNUSAS365320 SAMN36694631-rid18853113.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKFX010000024.1 Salmonella enterica strain PNUSAS365320 SAMN36694631-rid18853113.guided.18, whole genome shotgun sequence	5042..5479	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKFX010000012.1 Salmonella enterica strain PNUSAS365320 SAMN36694631-rid18853113.denovo.13, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNKFX010000016.1 Salmonella enterica strain PNUSAS365320 SAMN36694631-rid18853113.denovo.19, whole genome shotgun sequence	3397..3658																																																avrA	ABNKFX010000002.1	553636..554505	99.54	870	0						
GCA_032391045.1_PDT001825833.1_genomic.fna	Salmonella_enterica	0.5206	282.835 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	p0111	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKFY010000001.1 Salmonella enterica strain PNUSAS365313 SAMN36694629-rid18853093.denovo.01, whole genome shotgun sequence	591135..591572	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKFY010000035.1 Salmonella enterica strain PNUSAS365313 SAMN36694629-rid18853093.denovo.40, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKFY010000035.1 Salmonella enterica strain PNUSAS365313 SAMN36694629-rid18853093.denovo.40, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNKFY010000047.1 Salmonella enterica strain PNUSAS365313 SAMN36694629-rid18853093.guided.29, whole genome shotgun sequence	10123..10560	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKFY010000051.1 Salmonella enterica strain PNUSAS365313 SAMN36694629-rid18853093.guided.39, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKFY010000051.1 Salmonella enterica strain PNUSAS365313 SAMN36694629-rid18853093.guided.39, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNKFY010000039.1 Salmonella enterica strain PNUSAS365313 SAMN36694629-rid18853093.denovo.45, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNKFY010000052.1 Salmonella enterica strain PNUSAS365313 SAMN36694629-rid18853093.guided.44, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNKFY010000035.1 Salmonella enterica strain PNUSAS365313 SAMN36694629-rid18853093.denovo.40, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNKFY010000051.1 Salmonella enterica strain PNUSAS365313 SAMN36694629-rid18853093.guided.39, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNKFY010000029.1 Salmonella enterica strain PNUSAS365313 SAMN36694629-rid18853093.denovo.30, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNKFY010000049.1 Salmonella enterica strain PNUSAS365313 SAMN36694629-rid18853093.guided.34, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	p0111	98.31	885 / 885	ABNKFY010000015.1 Salmonella enterica strain PNUSAS365313 SAMN36694629-rid18853093.denovo.15, whole genome shotgun sequence	24374..25258																																																						avrA	ABNKFY010000002.1	540729..541598	99.885	870	0						
GCA_032391075.1_PDT001825831.1_genomic.fna	Salmonella_enterica	0.5201	511.218 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKGA010000001.1 Salmonella enterica strain PNUSAS365334 SAMN36694639-rid18853083.denovo.01, whole genome shotgun sequence	708204..708641	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKGA010000025.1 Salmonella enterica strain PNUSAS365334 SAMN36694639-rid18853083.guided.22, whole genome shotgun sequence	1426..1863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKGA010000003.1	407632..408500	99.31	870	0						
GCA_032391115.1_PDT001825829.1_genomic.fna	Salmonella_enterica	0.5223	762.446 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNKGC010000001.1 Salmonella enterica strain PNUSAS365328 SAMN36694637-rid18853073.denovo.01, whole genome shotgun sequence	482124..482561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNKGC010000021.1 Salmonella enterica strain PNUSAS365328 SAMN36694637-rid18853073.guided.16, whole genome shotgun sequence	783..1220	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKGC010000004.1	553694..554563	99.655	870	0						
GCA_032391135.1_PDT001825828.1_genomic.fna	Salmonella_enterica	0.5226	379.288 KB	5	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNKGD010000002.1 Salmonella enterica strain PNUSAS365331 SAMN36694643-rid18853063.denovo.02, whole genome shotgun sequence	386839..387276	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNKGD010000034.1 Salmonella enterica strain PNUSAS365331 SAMN36694643-rid18853063.guided.23, whole genome shotgun sequence	13884..14321	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKGD010000010.1	145444..146313	99.425	870	0						
GCA_032391155.1_PDT001825825.1_genomic.fna	Salmonella_enterica	0.5215	430.002 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKGH010000001.1 Salmonella enterica strain PNUSAS365317 SAMN36694625-rid18852183.denovo.01, whole genome shotgun sequence	562448..562885	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKGH010000029.1 Salmonella enterica strain PNUSAS365317 SAMN36694625-rid18852183.guided.18, whole genome shotgun sequence	26742..27179	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKGH010000011.1	93876..94744	99.195	870	0						
GCA_032391175.1_PDT001825826.1_genomic.fna	Salmonella_enterica	0.5222	496.638 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKGF010000001.1 Salmonella enterica strain PNUSAS365330 SAMN36694640-rid18853043.denovo.01, whole genome shotgun sequence	790278..790715	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKGF010000025.1 Salmonella enterica strain PNUSAS365330 SAMN36694640-rid18853043.guided.12, whole genome shotgun sequence	24276..24713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKGF010000002.1	157375..158244	98.966	870	0						
GCA_032391195.1_PDT001825827.1_genomic.fna	Salmonella_enterica	0.5211	660.466 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKGE010000001.1 Salmonella enterica strain PNUSAS365326 SAMN36694646-rid18853053.denovo.01, whole genome shotgun sequence	397247..397684	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNKGE010000024.1 Salmonella enterica strain PNUSAS365326 SAMN36694646-rid18853053.guided.14, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.39	446 / 445	ABNKGE010000011.1 Salmonella enterica strain PNUSAS365326 SAMN36694646-rid18853053.denovo.12, whole genome shotgun sequence	39786..40230	enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABNKGE010000011.1 Salmonella enterica strain PNUSAS365326 SAMN36694646-rid18853053.denovo.12, whole genome shotgun sequence	40491..40703																																																avrA	ABNKGE010000003.1	496410..497278	99.425	870	0						
GCA_032391215.1_PDT001825824.1_genomic.fna	Salmonella_enterica	0.5222	444.116 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKGG010000001.1 Salmonella enterica strain PNUSAS365314 SAMN36694622-rid18853033.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKGG010000030.1 Salmonella enterica strain PNUSAS365314 SAMN36694622-rid18853033.guided.12, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKGG010000002.1	149828..150697	99.655	870	0						
GCA_032391235.1_PDT001825822.1_genomic.fna	Salmonella_enterica	0.5209	593.848 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(p14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKGJ010000001.1 Salmonella enterica strain PNUSAS365312 SAMN36694624-rid18853013.denovo.01, whole genome shotgun sequence	538106..538543	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNKGJ010000028.1 Salmonella enterica strain PNUSAS365312 SAMN36694624-rid18853013.guided.19, whole genome shotgun sequence	21460..21897	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNKGJ010000012.1 Salmonella enterica strain PNUSAS365312 SAMN36694624-rid18853013.denovo.12, whole genome shotgun sequence	17040..17682	enterobacteriales	IncFII(p14)	92.02	263 / 262	ABNKGJ010000012.1 Salmonella enterica strain PNUSAS365312 SAMN36694624-rid18853013.denovo.12, whole genome shotgun sequence	33612..33870																																																avrA	ABNKGJ010000003.1	498621..499489	99.425	870	0						
GCA_032391275.1_PDT001825820.1_genomic.fna	Salmonella_enterica	0.5229	335.331 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKGK010000001.1 Salmonella enterica strain PNUSAS365319 SAMN36694623-rid18852173.denovo.01, whole genome shotgun sequence	791116..791553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKGK010000035.1 Salmonella enterica strain PNUSAS365319 SAMN36694623-rid18852173.guided.22, whole genome shotgun sequence	2646..3083	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032391295.1_PDT001825819.1_genomic.fna	Salmonella_enterica	0.5216	397.918 KB	5	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNKGL010000001.1 Salmonella enterica strain PNUSAS365316 SAMN36694626-rid18852993.denovo.01, whole genome shotgun sequence	666961..667398	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNKGL010000029.1 Salmonella enterica strain PNUSAS365316 SAMN36694626-rid18852993.guided.12, whole genome shotgun sequence	42411..42848	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKGL010000004.1	275704..276573	99.31	870	0						
GCA_032391555.1_PDT001825807.1_genomic.fna	Salmonella_enterica	0.5208	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKGV010000001.1 Salmonella enterica strain Chicken Gizzard SAMN36693265-rid18852123.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKGV010000048.1 Salmonella enterica strain Chicken Gizzard SAMN36693265-rid18852123.guided.26, whole genome shotgun sequence	21957..22394	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKGV010000029.1 Salmonella enterica strain Chicken Gizzard SAMN36693265-rid18852123.denovo.31, whole genome shotgun sequence	10191..10750																																																						avrA	ABNKGV010000002.1	148527..149396	99.655	870	0						
GCA_032392115.1_PDT001825654.1_genomic.fna	Salmonella_enterica	0.523	49.039 KB	31	aroC_347,dnaN_394,hemD_78,hisD_496,purE_426,sucA_9,thrA_102	1549	-:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_347	dnaN	100	100	dnaN_394	hemD	100	100	hemD_78	hisD	100	100	hisD_496	purE	100	100	purE_426	sucA	100	100	sucA_9	thrA	100	100	thrA_102	-	r	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:r:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKHX010000015.1 Salmonella enterica subsp. enterica serovar Altona strain FSIS22313617 SAMN36694420-rid18851413.denovo.015, whole genome shotgun sequence	11799..12236	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKHX010000198.1 Salmonella enterica subsp. enterica serovar Altona strain FSIS22313617 SAMN36694420-rid18851413.guided.106, whole genome shotgun sequence	9161..9598	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNKHX010000143.1 Salmonella enterica subsp. enterica serovar Altona strain FSIS22313617 SAMN36694420-rid18851413.denovo.146, whole genome shotgun sequence	2659..2800																																																						avrA	ABNKHX010000072.1	22215..23084	99.195	870	0						
GCA_032392135.1_PDT001825651.1_genomic.fna	Salmonella_enterica	0.5214	47.304 KB	33	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKHZ010000013.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313616 SAMN36694419-rid18851383.denovo.013, whole genome shotgun sequence	12383..12820	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKHZ010000234.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313616 SAMN36694419-rid18851383.guided.066, whole genome shotgun sequence	15485..15922	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNKHZ010000102.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313616 SAMN36694419-rid18851383.denovo.105, whole genome shotgun sequence	4504..4763	enterobacteriales	IncX1	100	373 / 373	ABNKHZ010000137.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313616 SAMN36694419-rid18851383.denovo.140, whole genome shotgun sequence	2153..2525																																																avrA	ABNKHZ010000006.1	100577..101446	99.655	870	0						
GCA_032392155.1_PDT001825652.1_genomic.fna	Salmonella_enterica	0.5226	47.539 KB	34	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKHY010000017.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313585 SAMN36694418-rid18851393.denovo.017, whole genome shotgun sequence	52315..52752	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKHY010000196.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313585 SAMN36694418-rid18851393.guided.083, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKHY010000073.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313585 SAMN36694418-rid18851393.denovo.073, whole genome shotgun sequence	2119..2678																																																						avrA	ABNKHY010000011.1	81701..82570	99.655	870	0						
GCA_032392175.1_PDT001825650.1_genomic.fna	Salmonella_enterica	0.5229	56.177 KB	31	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKIA010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313584 SAMN36694417-rid18851373.denovo.061, whole genome shotgun sequence	12523..12960	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKIA010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313584 SAMN36694417-rid18851373.denovo.067, whole genome shotgun sequence	22808..23599	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKIA010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313584 SAMN36694417-rid18851373.denovo.067, whole genome shotgun sequence	22808..23599	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNKIA010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313584 SAMN36694417-rid18851373.guided.070, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKIA010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313584 SAMN36694417-rid18851373.guided.070, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNKIA010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313584 SAMN36694417-rid18851373.guided.084, whole genome shotgun sequence	14986..15423	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNKIA010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313584 SAMN36694417-rid18851373.denovo.067, whole genome shotgun sequence	21464..22303	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKIA010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313584 SAMN36694417-rid18851373.guided.070, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKIA010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313584 SAMN36694417-rid18851373.denovo.067, whole genome shotgun sequence	7748..8947	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKIA010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313584 SAMN36694417-rid18851373.guided.070, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKIA010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313584 SAMN36694417-rid18851373.denovo.073, whole genome shotgun sequence	9109..9668																																																						avrA	ABNKIA010000022.1	61415..62284	99.655	870	0						
GCA_032392195.1_PDT001825649.1_genomic.fna	Salmonella_enterica	0.5196	331.277 KB	5	aroC_14,dnaN_536,hemD_40,hisD_797,purE_8,sucA_12,thrA_1	Unknown	8:z38:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_536	hemD	100	100	hemD_40	hisD	100	100	hisD_797	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_1	8	z38	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I 8:z38:e,n,z15	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKIB010000001.1 Salmonella enterica strain FDA1230004-C002-001 SAMN36694356-rid18851363.denovo.01, whole genome shotgun sequence	636584..637021	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKIB010000040.1 Salmonella enterica strain FDA1230004-C002-001 SAMN36694356-rid18851363.guided.27, whole genome shotgun sequence	16418..16855	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032392215.1_PDT001825648.1_genomic.fna	Salmonella_enterica	0.5217	213.562 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKIC010000002.1 Salmonella enterica strain FDA1230501-C001-001 SAMN36694355-rid18851353.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKIC010000072.1 Salmonella enterica strain FDA1230501-C001-001 SAMN36694355-rid18851353.guided.49, whole genome shotgun sequence	1473..1910	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKIC010000025.1 Salmonella enterica strain FDA1230501-C001-001 SAMN36694355-rid18851353.denovo.25, whole genome shotgun sequence	44727..45369	enterobacteriales	IncFII(S)	100	262 / 262	ABNKIC010000025.1 Salmonella enterica strain FDA1230501-C001-001 SAMN36694355-rid18851353.denovo.25, whole genome shotgun sequence	29381..29642																																																avrA	ABNKIC010000008.1	39348..40216	100	869	0						
GCA_032392255.1_PDT001825647.1_genomic.fna	Salmonella_enterica	0.5191	374.625 KB	5	aroC_92,dnaN_187,hemD_54,hisD_349,purE_418,sucA_90,thrA_565	2542	8:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_92	dnaN	100	100	dnaN_187	hemD	100	100	hemD_54	hisD	100	100	hisD_349	purE	100	100	purE_418	sucA	100	100	sucA_90	thrA	100	100	thrA_565	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKIE010000001.1 Salmonella enterica strain FDA1228824-C001-004 SAMN36694354-rid18851343.denovo.01, whole genome shotgun sequence	755073..755510	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKIE010000031.1 Salmonella enterica strain FDA1228824-C001-004 SAMN36694354-rid18851343.guided.19, whole genome shotgun sequence	16431..16868	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	ABNKIE010000021.1 Salmonella enterica strain FDA1228824-C001-004 SAMN36694354-rid18851343.denovo.24, whole genome shotgun sequence	1189..1298																																																						avrA	ABNKIE010000002.1	138062..138931	99.195	870	0						
GCA_032392445.1_PDT001914798.1_genomic.fna	Salmonella_enterica	0.5209	402.385 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQAMB010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759859-rid19603583.denovo.01, whole genome shotgun sequence	802056..802493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQAMB010000036.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759859-rid19603583.guided.21, whole genome shotgun sequence	8464..8901	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQAMB010000023.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759859-rid19603583.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQAMB010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759859-rid19603583.denovo.13, whole genome shotgun sequence	63437..63696		enterobacteriales	IncX1	98.66	374 / 374	DAQAMB010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759859-rid19603583.denovo.13, whole genome shotgun sequence	24684..25057																																									avrA	DAQAMB010000002.1	504576..505444	99.655	870	0						
GCA_032395525.1_PDT001914796.1_genomic.fna	Salmonella_enterica	0.521	412.036 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQARS010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759856-rid19603563.denovo.04, whole genome shotgun sequence	155747..156184	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQARS010000037.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759856-rid19603563.guided.21, whole genome shotgun sequence	4059..4496	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQARS010000022.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759856-rid19603563.denovo.25, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQARS010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759856-rid19603563.denovo.14, whole genome shotgun sequence	63437..63696		enterobacteriales	IncX1	98.66	374 / 374	DAQARS010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759856-rid19603563.denovo.14, whole genome shotgun sequence	24684..25057																																									avrA	DAQARS010000001.1	504582..505450	99.655	870	0						
GCA_032396585.1_PDT001914730.1_genomic.fna	Salmonella_enterica	0.5201	405.765 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		5	ColRNAI,IncFIB(AP001918),IncFII(S),IncFII(pCoo),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQATQ010000004.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759687-rid19602933.denovo.04, whole genome shotgun sequence	155755..156192	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQATQ010000041.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759687-rid19602933.guided.23, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQATQ010000026.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759687-rid19602933.denovo.29, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFIB(AP001918)	99.27	682 / 682	DAQATQ010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759687-rid19602933.denovo.14, whole genome shotgun sequence	22749..23430		enterobacteriales	IncFII(S)	97.71	262 / 262	DAQATQ010000016.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759687-rid19602933.denovo.17, whole genome shotgun sequence	63418..63677		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	DAQATQ010000014.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759687-rid19602933.denovo.14, whole genome shotgun sequence	45301..45562		enterobacteriales	IncX1	98.66	374 / 374	DAQATQ010000016.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759687-rid19602933.denovo.17, whole genome shotgun sequence	24683..25056																											avrA	DAQATQ010000001.1	486021..486889	99.655	870	0						
GCA_032413105.1_PDT001824299.1_genomic.fna	Salmonella_enterica	0.5211	490.178 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKIN010000001.1 Salmonella enterica strain PNUSAS365108 SAMN36678048-rid18836683.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKIN010000028.1 Salmonella enterica strain PNUSAS365108 SAMN36678048-rid18836683.guided.16, whole genome shotgun sequence	30268..30705	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKIN010000017.1 Salmonella enterica strain PNUSAS365108 SAMN36678048-rid18836683.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNKIN010000018.1 Salmonella enterica strain PNUSAS365108 SAMN36678048-rid18836683.denovo.21, whole genome shotgun sequence	3392..3653																																																avrA	ABNKIN010000002.1	585348..586217	99.54	870	0						
GCA_032413125.1_PDT001824300.1_genomic.fna	Salmonella_enterica	0.5217	269.771 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKIL010000001.1 Salmonella enterica strain PNUSAS365097 SAMN36678049-rid18836693.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKIL010000038.1 Salmonella enterica strain PNUSAS365097 SAMN36678049-rid18836693.guided.23, whole genome shotgun sequence	13021..13458	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKIL010000002.1	149828..150697	99.655	870	0						
GCA_032413145.1_PDT001824298.1_genomic.fna	Salmonella_enterica	0.5211	694.757 KB	2	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKIO010000001.1 Salmonella enterica strain PNUSAS365103 SAMN36678044-rid18836673.denovo.01, whole genome shotgun sequence	1098281..1098718	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKIO010000027.1 Salmonella enterica strain PNUSAS365103 SAMN36678044-rid18836673.guided.17, whole genome shotgun sequence	2254..2691	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNKIO010000015.1 Salmonella enterica strain PNUSAS365103 SAMN36678044-rid18836673.denovo.16, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNKIO010000017.1 Salmonella enterica strain PNUSAS365103 SAMN36678044-rid18836673.denovo.20, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	98.66	374 / 374	ABNKIO010000016.1 Salmonella enterica strain PNUSAS365103 SAMN36678044-rid18836673.denovo.18, whole genome shotgun sequence	5341..5714																																									avrA	ABNKIO010000002.1	553169..554038	99.54	870	0						
GCA_032413155.1_PDT001824297.1_genomic.fna	Salmonella_enterica	0.5224	326.563 KB	4	aroC_10,dnaN_71,hemD_21,hisD_12,purE_15,sucA_20,thrA_18	212	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_71	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_18	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNKIQ010000001.1 Salmonella enterica strain PNUSAS365101 SAMN36678039-rid18836663.denovo.01, whole genome shotgun sequence	462885..463322	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNKIQ010000020.1 Salmonella enterica strain PNUSAS365101 SAMN36678039-rid18836663.guided.17, whole genome shotgun sequence	32251..32688	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKIQ010000006.1	149352..150221	99.77	870	0						
GCA_032413185.1_PDT001824296.1_genomic.fna	Salmonella_enterica	0.5215	278.672 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aadA24,aph(6)-Id,aph(3'')-Ib,aadA24,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,floR,floR,qnrB19,qnrB19,sul2,sul2,sul2,sul2,tet(M),tet(B),tet(M),tet(B),dfrA12,dfrA12	0		3	Col(pHAD28),Col(pHAD28),IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKIR010000001.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.denovo.01, whole genome shotgun sequence	570674..571111	Amikacin, Tobramycin	NC_003197	aadA24	99.36	780/780	ABNKIR010000036.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.denovo.36, whole genome shotgun sequence	4690..5469	Spectinomycin, Streptomycin	DQ677333	aph(6)-Id	100	837/837	ABNKIR010000053.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.denovo.62, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	660/804	ABNKIR010000057.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.denovo.71, whole genome shotgun sequence	1..660	Streptomycin	AF321551	aadA24	99.36	780/780	ABNKIR010000064.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.guided.38, whole genome shotgun sequence	4731..5510	Spectinomycin, Streptomycin	DQ677333	aac(6')-Iaa	100	438/438	ABNKIR010000066.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.guided.42, whole genome shotgun sequence	4536..4973	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKIR010000072.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.guided.60, whole genome shotgun sequence	188..1024	Streptomycin	M28829	aph(3'')-Ib	100	662/804	ABNKIR010000077.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.guided.69, whole genome shotgun sequence	69..730	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNKIR010000049.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.denovo.56, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNKIR010000071.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.guided.57, whole genome shotgun sequence	461..1321	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.11	1214/1215	ABNKIR010000041.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.denovo.44, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNKIR010000068.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.guided.49, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNKIR010000046.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.denovo.51, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNKIR010000069.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.guided.52, whole genome shotgun sequence	895..1539	Ciprofloxacin	EU432277	sul2	100	816/816	ABNKIR010000073.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.guided.64, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNKIR010000074.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.guided.65, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNKIR010000075.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.guided.66, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNKIR010000076.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.guided.67, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(M)	96.15	1920/1920	ABNKIR010000036.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.denovo.36, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNKIR010000037.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.denovo.37, whole genome shotgun sequence	7275..8480	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNKIR010000064.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.guided.38, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNKIR010000070.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.guided.53, whole genome shotgun sequence	683..1888	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABNKIR010000036.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.denovo.36, whole genome shotgun sequence	5889..6386	Trimethoprim	AM040708	dfrA12	100	498/498	ABNKIR010000064.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.guided.38, whole genome shotgun sequence	5930..6427	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	100	131 / 131	ABNKIR010000046.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.denovo.51, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNKIR010000069.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.guided.52, whole genome shotgun sequence	239..369		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNKIR010000033.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.denovo.33, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNKIR010000025.1 Salmonella enterica strain PNUSAS365105 SAMN36678047-rid18836653.denovo.25, whole genome shotgun sequence	55571..56067																																		avrA	ABNKIR010000002.1	540740..541609	99.885	870	0						
GCA_032413205.1_PDT001824295.1_genomic.fna	Salmonella_enterica	0.5215	273.33 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKIS010000002.1 Salmonella enterica strain PNUSAS365100 SAMN36678043-rid18836643.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKIS010000046.1 Salmonella enterica strain PNUSAS365100 SAMN36678043-rid18836643.guided.26, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKIS010000022.1 Salmonella enterica strain PNUSAS365100 SAMN36678043-rid18836643.denovo.22, whole genome shotgun sequence	44718..45360	enterobacteriales	IncFII(S)	100	262 / 262	ABNKIS010000022.1 Salmonella enterica strain PNUSAS365100 SAMN36678043-rid18836643.denovo.22, whole genome shotgun sequence	29372..29633		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNKIS010000018.1 Salmonella enterica strain PNUSAS365100 SAMN36678043-rid18836643.denovo.18, whole genome shotgun sequence	66857..66998																																									avrA	ABNKIS010000004.1	209589..210457	100	869	0						
GCA_032413225.1_PDT001824294.1_genomic.fna	Salmonella_enterica	0.5222	354.316 KB	5	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_19,thrA_12	582	8:z4,z23:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	z4,z23	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Chailey		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKIP010000001.1 Salmonella enterica strain PNUSAS365106 SAMN36678040-rid18836633.denovo.01, whole genome shotgun sequence	487972..488409	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKIP010000026.1 Salmonella enterica strain PNUSAS365106 SAMN36678040-rid18836633.guided.19, whole genome shotgun sequence	3250..3687	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKIP010000007.1	140164..141032	99.425	870	0						
GCA_032413245.1_PDT001824292.1_genomic.fna	Salmonella_enterica	0.5214	193.866 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKIU010000001.1 Salmonella enterica strain PNUSAS365102 SAMN36678042-rid18836613.denovo.01, whole genome shotgun sequence	460175..460612	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKIU010000015.1 Salmonella enterica strain PNUSAS365102 SAMN36678042-rid18836613.denovo.15, whole genome shotgun sequence	1396..2187	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKIU010000015.1 Salmonella enterica strain PNUSAS365102 SAMN36678042-rid18836613.denovo.15, whole genome shotgun sequence	1396..2187	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNKIU010000049.1 Salmonella enterica strain PNUSAS365102 SAMN36678042-rid18836613.guided.28, whole genome shotgun sequence	22546..22983	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKIU010000052.1 Salmonella enterica strain PNUSAS365102 SAMN36678042-rid18836613.guided.38, whole genome shotgun sequence	1437..2228	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKIU010000052.1 Salmonella enterica strain PNUSAS365102 SAMN36678042-rid18836613.guided.38, whole genome shotgun sequence	1437..2228	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNKIU010000015.1 Salmonella enterica strain PNUSAS365102 SAMN36678042-rid18836613.denovo.15, whole genome shotgun sequence	2692..3531	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKIU010000052.1 Salmonella enterica strain PNUSAS365102 SAMN36678042-rid18836613.guided.38, whole genome shotgun sequence	2733..3572	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKIU010000015.1 Salmonella enterica strain PNUSAS365102 SAMN36678042-rid18836613.denovo.15, whole genome shotgun sequence	16048..17247	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKIU010000051.1 Salmonella enterica strain PNUSAS365102 SAMN36678042-rid18836613.guided.37, whole genome shotgun sequence	7833..9032	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNKIU010000035.1 Salmonella enterica strain PNUSAS365102 SAMN36678042-rid18836613.denovo.40, whole genome shotgun sequence	3121..3594	Trimethoprim	AF393510	dfrA14	100	474/474	ABNKIU010000053.1 Salmonella enterica strain PNUSAS365102 SAMN36678042-rid18836613.guided.43, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKIU010000031.1 Salmonella enterica strain PNUSAS365102 SAMN36678042-rid18836613.denovo.34, whole genome shotgun sequence	9109..9668																																																						avrA	ABNKIU010000002.1	149828..150697	99.655	870	0						
GCA_032413265.1_PDT001824293.1_genomic.fna	Salmonella_enterica	0.5218	244.606 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKIT010000001.1 Salmonella enterica strain PNUSAS365099 SAMN36678050-rid18836623.denovo.01, whole genome shotgun sequence	404305..404742	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKIT010000027.1 Salmonella enterica strain PNUSAS365099 SAMN36678050-rid18836623.denovo.28, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKIT010000027.1 Salmonella enterica strain PNUSAS365099 SAMN36678050-rid18836623.denovo.28, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNKIT010000053.1 Salmonella enterica strain PNUSAS365099 SAMN36678050-rid18836623.guided.32, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKIT010000053.1 Salmonella enterica strain PNUSAS365099 SAMN36678050-rid18836623.guided.32, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNKIT010000054.1 Salmonella enterica strain PNUSAS365099 SAMN36678050-rid18836623.guided.37, whole genome shotgun sequence	3535..3972	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNKIT010000027.1 Salmonella enterica strain PNUSAS365099 SAMN36678050-rid18836623.denovo.28, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKIT010000053.1 Salmonella enterica strain PNUSAS365099 SAMN36678050-rid18836623.guided.32, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKIT010000027.1 Salmonella enterica strain PNUSAS365099 SAMN36678050-rid18836623.denovo.28, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKIT010000053.1 Salmonella enterica strain PNUSAS365099 SAMN36678050-rid18836623.guided.32, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKIT010000030.1 Salmonella enterica strain PNUSAS365099 SAMN36678050-rid18836623.denovo.33, whole genome shotgun sequence	9109..9668																																																						avrA	ABNKIT010000002.1	149828..150697	99.655	870	0						
GCA_032413285.1_PDT001824291.1_genomic.fna	Salmonella_enterica	0.5212	406.452 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKIV010000001.1 Salmonella enterica strain PNUSAS365098 SAMN36678046-rid18836603.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKIV010000030.1 Salmonella enterica strain PNUSAS365098 SAMN36678046-rid18836603.guided.22, whole genome shotgun sequence	3307..3744	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKIV010000021.1 Salmonella enterica strain PNUSAS365098 SAMN36678046-rid18836603.denovo.21, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNKIV010000022.1 Salmonella enterica strain PNUSAS365098 SAMN36678046-rid18836603.denovo.23, whole genome shotgun sequence	3392..3653																																																avrA	ABNKIV010000002.1	585348..586217	99.54	870	0						
GCA_032413305.1_PDT001824289.1_genomic.fna	Salmonella_enterica	0.5213	489.885 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKIY010000001.1 Salmonella enterica strain PNUSAS365104 SAMN36678041-rid18836583.denovo.01, whole genome shotgun sequence	774495..774932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKIY010000028.1 Salmonella enterica strain PNUSAS365104 SAMN36678041-rid18836583.guided.19, whole genome shotgun sequence	8093..8530	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKIY010000018.1 Salmonella enterica strain PNUSAS365104 SAMN36678041-rid18836583.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNKIY010000019.1 Salmonella enterica strain PNUSAS365104 SAMN36678041-rid18836583.denovo.21, whole genome shotgun sequence	3402..3663																																																avrA	ABNKIY010000002.1	553606..554475	99.54	870	0						
GCA_032413325.1_PDT001824283.1_genomic.fna	Salmonella_enterica	0.5201	416.129 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKIZ010000001.1 Salmonella enterica strain PNUSAS365182 SAMN36676957-rid18836533.denovo.01, whole genome shotgun sequence	1361168..1361605	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKIZ010000033.1 Salmonella enterica strain PNUSAS365182 SAMN36676957-rid18836533.guided.22, whole genome shotgun sequence	10228..10665	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKIZ010000003.1	140050..140919	99.425	870	0						
GCA_032413345.1_PDT001824290.1_genomic.fna	Salmonella_enterica	0.5214	219.508 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKIW010000001.1 Salmonella enterica strain PNUSAS365107 SAMN36678045-rid18836593.denovo.01, whole genome shotgun sequence	233304..233741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKIW010000043.1 Salmonella enterica strain PNUSAS365107 SAMN36678045-rid18836593.guided.30, whole genome shotgun sequence	20620..21057	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKIW010000002.1	208058..208926	99.77	870	0						
GCA_032413365.1_PDT001824284.1_genomic.fna	Salmonella_enterica	0.5208	696.432 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKIX010000001.1 Salmonella enterica strain PNUSAS365177 SAMN36676960-rid18836543.denovo.01, whole genome shotgun sequence	642138..642575	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKIX010000018.1 Salmonella enterica strain PNUSAS365177 SAMN36676960-rid18836543.guided.10, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032413385.1_PDT001824282.1_genomic.fna	Salmonella_enterica	0.5211	363.494 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKJC010000003.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.denovo.03, whole genome shotgun sequence	159454..159891	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKJC010000021.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.denovo.22, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNKJC010000021.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.denovo.22, whole genome shotgun sequence	30930..31732	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNKJC010000031.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.denovo.40, whole genome shotgun sequence	137..952	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	aac(6')-Iaa	98.63	438/438	ABNKJC010000043.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.guided.26, whole genome shotgun sequence	2916..3353	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKJC010000045.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.guided.32, whole genome shotgun sequence	3249..4085	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNKJC010000045.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.guided.32, whole genome shotgun sequence	2447..3249	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNKJC010000049.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.guided.39, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	blaCMY-2	100	1146/1146	ABNKJC010000021.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.denovo.22, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNKJC010000027.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.denovo.31, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNKJC010000027.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.denovo.31, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNKJC010000027.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.denovo.31, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNKJC010000044.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.guided.30, whole genome shotgun sequence	2983..4128	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNKJC010000048.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.guided.36, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNKJC010000048.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.guided.36, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNKJC010000048.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.guided.36, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNKJC010000021.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.denovo.22, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNKJC010000046.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.guided.33, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNKJC010000021.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.denovo.22, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNKJC010000045.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.guided.32, whole genome shotgun sequence	1571..2386	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNKJC010000021.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.denovo.22, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNKJC010000047.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.guided.35, whole genome shotgun sequence	1263..2537	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncC	100	417 / 417	ABNKJC010000019.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.denovo.20, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNKJC010000016.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.denovo.17, whole genome shotgun sequence	29712..29971		enterobacteriales	IncX1	98.66	374 / 374	ABNKJC010000016.1 Salmonella enterica strain PNUSAS365181 SAMN36676956-rid18836523.denovo.17, whole genome shotgun sequence	65566..65939																																									avrA	ABNKJC010000007.1	173549..174417	99.54	870	0						
GCA_032413405.1_PDT001824280.1_genomic.fna	Salmonella_enterica	0.5213	311.44 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKJA010000005.1 Salmonella enterica strain PNUSAS365164 SAMN36676950-rid18836513.denovo.05, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKJA010000042.1 Salmonella enterica strain PNUSAS365164 SAMN36676950-rid18836513.guided.20, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKJA010000018.1 Salmonella enterica strain PNUSAS365164 SAMN36676950-rid18836513.denovo.18, whole genome shotgun sequence	48484..49126	enterobacteriales	IncFII(S)	100	262 / 262	ABNKJA010000018.1 Salmonella enterica strain PNUSAS365164 SAMN36676950-rid18836513.denovo.18, whole genome shotgun sequence	64210..64471																																																avrA	ABNKJA010000003.1	203947..204815	100	869	0						
GCA_032413425.1_PDT001824279.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKJB010000001.1 Salmonella enterica strain PNUSAS365169 SAMN36676964-rid18836503.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKJB010000023.1 Salmonella enterica strain PNUSAS365169 SAMN36676964-rid18836503.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKJB010000012.1 Salmonella enterica strain PNUSAS365169 SAMN36676964-rid18836503.denovo.14, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	ABNKJB010000015.1 Salmonella enterica strain PNUSAS365169 SAMN36676964-rid18836503.denovo.18, whole genome shotgun sequence	3337..3598																																																avrA	ABNKJB010000002.1	553636..554505	99.54	870	0						
GCA_032413445.1_PDT001824276.1_genomic.fna	Salmonella_enterica	0.5211	492.287 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKJD010000001.1 Salmonella enterica strain PNUSAS365176 SAMN36676962-rid18836253.denovo.01, whole genome shotgun sequence	149396..149833	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKJD010000021.1 Salmonella enterica strain PNUSAS365176 SAMN36676962-rid18836253.guided.16, whole genome shotgun sequence	7597..8034	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032413465.1_PDT001824273.1_genomic.fna	Salmonella_enterica	0.5218	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKJE010000005.1 Salmonella enterica strain PNUSAS365161 SAMN36676972-rid18836453.denovo.05, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKJE010000045.1 Salmonella enterica strain PNUSAS365161 SAMN36676972-rid18836453.guided.30, whole genome shotgun sequence	10946..11383	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKJE010000017.1 Salmonella enterica strain PNUSAS365161 SAMN36676972-rid18836453.denovo.17, whole genome shotgun sequence	48415..49057	enterobacteriales	IncFII(S)	100	262 / 262	ABNKJE010000017.1 Salmonella enterica strain PNUSAS365161 SAMN36676972-rid18836453.denovo.17, whole genome shotgun sequence	64141..64402																																																avrA	ABNKJE010000001.1	174651..175519	100	869	0						
GCA_032413485.1_PDT001824263.1_genomic.fna	Salmonella_enterica	0.5201	490.113 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKJI010000001.1 Salmonella enterica strain PNUSAS365171 SAMN36676949-rid18836363.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKJI010000022.1 Salmonella enterica strain PNUSAS365171 SAMN36676949-rid18836363.guided.12, whole genome shotgun sequence	31548..31985	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNKJI010000017.1 Salmonella enterica strain PNUSAS365171 SAMN36676949-rid18836363.denovo.20, whole genome shotgun sequence	967..1118	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKJI010000011.1 Salmonella enterica strain PNUSAS365171 SAMN36676949-rid18836363.denovo.13, whole genome shotgun sequence	40536..41178		enterobacteriales	IncFII(S)	100	262 / 262	ABNKJI010000015.1 Salmonella enterica strain PNUSAS365171 SAMN36676949-rid18836363.denovo.18, whole genome shotgun sequence	3404..3665		enterobacteriales	IncX1	98.93	374 / 374	ABNKJI010000012.1 Salmonella enterica strain PNUSAS365171 SAMN36676949-rid18836363.denovo.14, whole genome shotgun sequence	32011..32384																																		avrA	ABNKJI010000002.1	553684..554553	99.54	870	0						
GCA_032413505.1_PDT001824266.1_genomic.fna	Salmonella_enterica	0.5216	728.878 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncR,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNKJJ010000001.1 Salmonella enterica strain PNUSAS365159 SAMN36676952-rid18836243.denovo.01, whole genome shotgun sequence	150000..150437	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNKJJ010000027.1 Salmonella enterica strain PNUSAS365159 SAMN36676952-rid18836243.guided.17, whole genome shotgun sequence	16164..16601	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNKJJ010000017.1 Salmonella enterica strain PNUSAS365159 SAMN36676952-rid18836243.denovo.19, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNKJJ010000031.1 Salmonella enterica strain PNUSAS365159 SAMN36676952-rid18836243.guided.28, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNKJJ010000017.1 Salmonella enterica strain PNUSAS365159 SAMN36676952-rid18836243.denovo.19, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNKJJ010000030.1 Salmonella enterica strain PNUSAS365159 SAMN36676952-rid18836243.guided.26, whole genome shotgun sequence	490..1703	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNKJJ010000017.1 Salmonella enterica strain PNUSAS365159 SAMN36676952-rid18836243.denovo.19, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKJJ010000029.1 Salmonella enterica strain PNUSAS365159 SAMN36676952-rid18836243.guided.23, whole genome shotgun sequence	1321..2160	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNKJJ010000017.1 Salmonella enterica strain PNUSAS365159 SAMN36676952-rid18836243.denovo.19, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNKJJ010000029.1 Salmonella enterica strain PNUSAS365159 SAMN36676952-rid18836243.guided.23, whole genome shotgun sequence	4836..6110	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNKJJ010000017.1 Salmonella enterica strain PNUSAS365159 SAMN36676952-rid18836243.denovo.19, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNKJJ010000029.1 Salmonella enterica strain PNUSAS365159 SAMN36676952-rid18836243.guided.23, whole genome shotgun sequence	3205..3678	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNKJJ010000016.1 Salmonella enterica strain PNUSAS365159 SAMN36676952-rid18836243.denovo.18, whole genome shotgun sequence	15775..16025	enterobacteriales	IncX1	94.92	374 / 374	ABNKJJ010000010.1 Salmonella enterica strain PNUSAS365159 SAMN36676952-rid18836243.denovo.11, whole genome shotgun sequence	13796..14169																																																avrA	ABNKJJ010000004.1	553473..554342	99.77	870	0						
GCA_032413525.1_PDT001824269.1_genomic.fna	Salmonella_enterica	0.5196	430.193 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKJF010000001.1 Salmonella enterica strain PNUSAS365165 SAMN36676970-rid18836413.denovo.01, whole genome shotgun sequence	563827..564264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKJF010000031.1 Salmonella enterica strain PNUSAS365165 SAMN36676970-rid18836413.guided.19, whole genome shotgun sequence	25984..26421	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKJF010000009.1	140202..141070	99.195	870	0						
GCA_032413545.1_PDT001824265.1_genomic.fna	Salmonella_enterica	0.5203	490.113 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKJH010000001.1 Salmonella enterica strain PNUSAS365184 SAMN36676954-rid18836383.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKJH010000021.1 Salmonella enterica strain PNUSAS365184 SAMN36676954-rid18836383.guided.12, whole genome shotgun sequence	34148..34585	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKJH010000012.1 Salmonella enterica strain PNUSAS365184 SAMN36676954-rid18836383.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNKJH010000016.1 Salmonella enterica strain PNUSAS365184 SAMN36676954-rid18836383.denovo.19, whole genome shotgun sequence	3388..3649		enterobacteriales	IncX1	98.93	374 / 374	ABNKJH010000013.1 Salmonella enterica strain PNUSAS365184 SAMN36676954-rid18836383.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNKJH010000002.1	553684..554553	99.54	870	0						
GCA_032413565.1_PDT001824270.1_genomic.fna	Salmonella_enterica	0.521	222.566 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKJG010000003.1 Salmonella enterica strain PNUSAS365174 SAMN36676965-rid18836423.denovo.03, whole genome shotgun sequence	162385..162822	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNKJG010000024.1 Salmonella enterica strain PNUSAS365174 SAMN36676965-rid18836423.denovo.24, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNKJG010000048.1 Salmonella enterica strain PNUSAS365174 SAMN36676965-rid18836423.guided.28, whole genome shotgun sequence	13403..13840	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNKJG010000053.1 Salmonella enterica strain PNUSAS365174 SAMN36676965-rid18836423.guided.45, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNKJG010000033.1 Salmonella enterica strain PNUSAS365174 SAMN36676965-rid18836423.denovo.37, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNKJG010000052.1 Salmonella enterica strain PNUSAS365174 SAMN36676965-rid18836423.guided.43, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNKJG010000033.1 Salmonella enterica strain PNUSAS365174 SAMN36676965-rid18836423.denovo.37, whole genome shotgun sequence	6603..7817	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNKJG010000051.1 Salmonella enterica strain PNUSAS365174 SAMN36676965-rid18836423.guided.38, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNKJG010000049.1 Salmonella enterica strain PNUSAS365174 SAMN36676965-rid18836423.guided.31, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNKJG010000033.1 Salmonella enterica strain PNUSAS365174 SAMN36676965-rid18836423.denovo.37, whole genome shotgun sequence	4491..5666	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNKJG010000051.1 Salmonella enterica strain PNUSAS365174 SAMN36676965-rid18836423.guided.38, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	IncFIB(S)	100	643 / 643	ABNKJG010000019.1 Salmonella enterica strain PNUSAS365174 SAMN36676965-rid18836423.denovo.19, whole genome shotgun sequence	36050..36692	enterobacteriales	IncFII(S)	100	262 / 262	ABNKJG010000019.1 Salmonella enterica strain PNUSAS365174 SAMN36676965-rid18836423.denovo.19, whole genome shotgun sequence	51777..52038																																																avrA	ABNKJG010000001.1	506658..507527	99.885	870	0						
GCA_032413585.1_PDT001824233.1_genomic.fna	Salmonella_enterica	0.5205	74.284 KB	21	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKJK010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323708 SAMN36676602-rid18836123.denovo.012, whole genome shotgun sequence	52328..52765	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKJK010000088.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323708 SAMN36676602-rid18836123.denovo.091, whole genome shotgun sequence	5750..6586	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKJK010000088.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323708 SAMN36676602-rid18836123.denovo.091, whole genome shotgun sequence	6586..7389	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNKJK010000159.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323708 SAMN36676602-rid18836123.guided.069, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKJK010000162.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323708 SAMN36676602-rid18836123.guided.098, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKJK010000162.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323708 SAMN36676602-rid18836123.guided.098, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNKJK010000107.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323708 SAMN36676602-rid18836123.denovo.112, whole genome shotgun sequence	2279..3484	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNKJK010000163.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323708 SAMN36676602-rid18836123.guided.111, whole genome shotgun sequence	2310..3515	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNKJK010000108.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323708 SAMN36676602-rid18836123.denovo.113, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNKJK010000088.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323708 SAMN36676602-rid18836123.denovo.091, whole genome shotgun sequence	4866..5127		enterobacteriales	IncFII	96.95	262 / 261	ABNKJK010000162.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323708 SAMN36676602-rid18836123.guided.098, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABNKJK010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323708 SAMN36676602-rid18836123.denovo.088, whole genome shotgun sequence	2153..2525																																		avrA	ABNKJK010000009.1	102495..103364	99.655	870	0						
GCA_032413605.1_PDT001824232.1_genomic.fna	Salmonella_enterica	0.5227	68.198 KB	19	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNKJL010000042.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12323707 SAMN36676601-rid18836113.denovo.042, whole genome shotgun sequence	14072..14509	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNKJL010000138.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12323707 SAMN36676601-rid18836113.guided.043, whole genome shotgun sequence	14128..14565	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKJL010000082.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12323707 SAMN36676601-rid18836113.denovo.085, whole genome shotgun sequence	3876..4409																																																						avrA	ABNKJL010000008.1	102242..103111	99.77	870	0						
GCA_032413625.1_PDT001824231.1_genomic.fna	Salmonella_enterica	0.523	49.832 KB	31	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNKJM010000055.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323608 SAMN36676585-rid18836103.denovo.055, whole genome shotgun sequence	11360..11797	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNKJM010000207.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323608 SAMN36676585-rid18836103.guided.106, whole genome shotgun sequence	7396..7833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNKJM010000151.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323608 SAMN36676585-rid18836103.denovo.154, whole genome shotgun sequence	557..687	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNKJM010000152.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323608 SAMN36676585-rid18836103.denovo.155, whole genome shotgun sequence	186..316		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNKJM010000158.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323608 SAMN36676585-rid18836103.denovo.161, whole genome shotgun sequence	114..255																																									avrA	ABNKJM010000032.1	43689..44557	99.655	869	0						
GCA_032413645.1_PDT001824230.1_genomic.fna	Salmonella_enterica	0.5221	54.856 KB	28	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKJP010000055.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323610 SAMN36676582-rid18836223.denovo.055, whole genome shotgun sequence	15174..15611	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNKJP010000122.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323610 SAMN36676582-rid18836223.denovo.126, whole genome shotgun sequence	6054..6856	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNKJP010000122.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323610 SAMN36676582-rid18836223.denovo.126, whole genome shotgun sequence	6054..6857	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNKJP010000122.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323610 SAMN36676582-rid18836223.denovo.126, whole genome shotgun sequence	6054..6857	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNKJP010000122.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323610 SAMN36676582-rid18836223.denovo.126, whole genome shotgun sequence	6054..6857	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNKJP010000122.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323610 SAMN36676582-rid18836223.denovo.126, whole genome shotgun sequence	5314..6054	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNKJP010000122.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323610 SAMN36676582-rid18836223.denovo.126, whole genome shotgun sequence	5314..6054	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABNKJP010000206.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323610 SAMN36676582-rid18836223.guided.069, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNKJP010000209.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323610 SAMN36676582-rid18836223.guided.125, whole genome shotgun sequence	1076..1878	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNKJP010000209.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323610 SAMN36676582-rid18836223.guided.125, whole genome shotgun sequence	1075..1878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNKJP010000209.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323610 SAMN36676582-rid18836223.guided.125, whole genome shotgun sequence	1075..1878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNKJP010000209.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323610 SAMN36676582-rid18836223.guided.125, whole genome shotgun sequence	1075..1878	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNKJP010000209.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323610 SAMN36676582-rid18836223.guided.125, whole genome shotgun sequence	1878..2618	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNKJP010000209.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323610 SAMN36676582-rid18836223.guided.125, whole genome shotgun sequence	1878..2618	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNKJP010000132.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323610 SAMN36676582-rid18836223.denovo.136, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABNKJP010000083.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323610 SAMN36676582-rid18836223.denovo.084, whole genome shotgun sequence	4945..5441																																																avrA	ABNKJP010000021.1	61533..62402	98.966	870	0						
GCA_032413665.1_PDT001824229.1_genomic.fna	Salmonella_enterica	0.5219	46.592 KB	34	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	-:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	-	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKJO010000013.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323607 SAMN36676584-rid18836093.denovo.013, whole genome shotgun sequence	17174..17611	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKJO010000221.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323607 SAMN36676584-rid18836093.guided.032, whole genome shotgun sequence	31183..31620	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNKJO010000112.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323607 SAMN36676584-rid18836093.denovo.114, whole genome shotgun sequence	10203..10625	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNKJO010000224.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323607 SAMN36676584-rid18836093.guided.136, whole genome shotgun sequence	4776..5198	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKJO010000010.1	80378..81247	99.195	870	0						
GCA_032413685.1_PDT001824228.1_genomic.fna	Salmonella_enterica	0.5228	99.302 KB	15	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNKJN010000037.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323705 SAMN36676583-rid18836213.denovo.37, whole genome shotgun sequence	31542..31979	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNKJN010000075.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323705 SAMN36676583-rid18836213.guided.60, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABNKJN010000064.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323705 SAMN36676583-rid18836213.denovo.67, whole genome shotgun sequence	2246..2354	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNKJN010000061.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323705 SAMN36676583-rid18836213.denovo.64, whole genome shotgun sequence	257..398																																																avrA	ABNKJN010000003.1	145386..146255	99.425	870	0						
GCA_032413785.1_PDT001824227.1_genomic.fna	Salmonella_enterica	0.5214	136.556 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKJR010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323609 SAMN36676581-rid18836083.denovo.03, whole genome shotgun sequence	52336..52773	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKJR010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323609 SAMN36676581-rid18836083.guided.49, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKJR010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323609 SAMN36676581-rid18836083.denovo.31, whole genome shotgun sequence	36932..37491																																																						avrA	ABNKJR010000004.1	149828..150697	99.655	870	0						
GCA_032414065.1_PDT001824183.1_genomic.fna	Salmonella_enterica	0.5226	47.737 KB	36	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKKC010000019.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313614 SAMN36676451-rid18836173.denovo.019, whole genome shotgun sequence	15507..15944	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKKC010000188.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313614 SAMN36676451-rid18836173.guided.023, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNKKC010000067.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313614 SAMN36676451-rid18836173.denovo.068, whole genome shotgun sequence	14120..15265	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNKKC010000190.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313614 SAMN36676451-rid18836173.guided.094, whole genome shotgun sequence	13901..15046	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNKKC010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313614 SAMN36676451-rid18836173.denovo.096, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNKKC010000192.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313614 SAMN36676451-rid18836173.guided.135, whole genome shotgun sequence	3114..3929	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNKKC010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313614 SAMN36676451-rid18836173.denovo.096, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKKC010000192.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313614 SAMN36676451-rid18836173.guided.135, whole genome shotgun sequence	6106..7305	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNKKC010000151.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313614 SAMN36676451-rid18836173.denovo.156, whole genome shotgun sequence	371..501	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNKKC010000152.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313614 SAMN36676451-rid18836173.denovo.157, whole genome shotgun sequence	3139..3269		enterobacteriales	Col(pHAD28)	93.02	129 / 131	ABNKKC010000159.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313614 SAMN36676451-rid18836173.denovo.164, whole genome shotgun sequence	1391..1519		enterobacteriales	IncC	100	417 / 417	ABNKKC010000049.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313614 SAMN36676451-rid18836173.denovo.050, whole genome shotgun sequence	37532..37948																																		avrA	ABNKKC010000008.1	84001..84870	99.885	870	0						
GCA_032414085.1_PDT001824177.1_genomic.fna	Salmonella_enterica	0.5227	65.002 KB	24	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKKB010000047.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313615 SAMN36676456-rid18835623.denovo.048, whole genome shotgun sequence	17262..17699	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKKB010000147.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313615 SAMN36676456-rid18835623.guided.036, whole genome shotgun sequence	33730..34167	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKKB010000092.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313615 SAMN36676456-rid18835623.denovo.095, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNKKB010000106.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313615 SAMN36676456-rid18835623.denovo.109, whole genome shotgun sequence	3392..3653																																																avrA	ABNKKB010000007.1	61525..62394	99.54	870	0						
GCA_032414105.1_PDT001824176.1_genomic.fna	Salmonella_enterica	0.5216	65.926 KB	26	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKKD010000026.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313613 SAMN36676445-rid18835613.denovo.026, whole genome shotgun sequence	52404..52841	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKKD010000160.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313613 SAMN36676445-rid18835613.guided.074, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNKKD010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313613 SAMN36676445-rid18835613.denovo.087, whole genome shotgun sequence	4655..4914	enterobacteriales	IncX1	100	373 / 373	ABNKKD010000137.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313613 SAMN36676445-rid18835613.denovo.140, whole genome shotgun sequence	1118..1490																																																avrA	ABNKKD010000043.1	39484..40353	99.655	870	0						
GCA_032414115.1_PDT001824170.1_genomic.fna	Salmonella_enterica	0.5212	61.317 KB	24	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKKG010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313610 SAMN36676433-rid18835563.denovo.058, whole genome shotgun sequence	12529..12966	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKKG010000165.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313610 SAMN36676433-rid18835563.guided.069, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNKKG010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313610 SAMN36676433-rid18835563.denovo.087, whole genome shotgun sequence	4356..4615	enterobacteriales	IncX1	100	373 / 373	ABNKKG010000120.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313610 SAMN36676433-rid18835563.denovo.123, whole genome shotgun sequence	2153..2525																																																avrA	ABNKKG010000042.1	39484..40353	99.655	870	0						
GCA_032414165.1_PDT001824167.1_genomic.fna	Salmonella_enterica	0.5236	60.874 KB	25	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKKH010000020.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313609 SAMN36676430-rid18835533.denovo.020, whole genome shotgun sequence	12469..12906	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKKH010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313609 SAMN36676430-rid18835533.denovo.072, whole genome shotgun sequence	18454..19245	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKKH010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313609 SAMN36676430-rid18835533.denovo.072, whole genome shotgun sequence	18454..19245	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNKKH010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313609 SAMN36676430-rid18835533.guided.079, whole genome shotgun sequence	5726..6163	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKKH010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313609 SAMN36676430-rid18835533.guided.093, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKKH010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313609 SAMN36676430-rid18835533.guided.093, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	fosA3	100	417/417	ABNKKH010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313609 SAMN36676430-rid18835533.denovo.134, whole genome shotgun sequence	268..684	Fosfomycin	AB522970	fosA3	100	417/417	ABNKKH010000169.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313609 SAMN36676430-rid18835533.guided.149, whole genome shotgun sequence	309..725	Fosfomycin	AB522970	sul1	100	840/840	ABNKKH010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313609 SAMN36676430-rid18835533.denovo.072, whole genome shotgun sequence	17110..17949	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKKH010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313609 SAMN36676430-rid18835533.guided.093, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKKH010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313609 SAMN36676430-rid18835533.denovo.072, whole genome shotgun sequence	3394..4593	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKKH010000168.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313609 SAMN36676430-rid18835533.guided.116, whole genome shotgun sequence	1895..3094	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKKH010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313609 SAMN36676430-rid18835533.denovo.121, whole genome shotgun sequence	2095..2654																																																						avrA	ABNKKH010000037.1	39528..40397	99.655	870	0						
GCA_032414205.1_PDT001824165.1_genomic.fna	Salmonella_enterica	0.521	65.65 KB	21	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKKI010000015.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313611 SAMN36676436-rid18835513.denovo.015, whole genome shotgun sequence	82028..82465	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKKI010000099.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313611 SAMN36676436-rid18835513.denovo.102, whole genome shotgun sequence	2263..3099	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKKI010000099.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313611 SAMN36676436-rid18835513.denovo.102, whole genome shotgun sequence	3099..3902	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNKKI010000168.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313611 SAMN36676436-rid18835513.guided.055, whole genome shotgun sequence	14012..14449	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKKI010000170.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313611 SAMN36676436-rid18835513.guided.103, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKKI010000170.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313611 SAMN36676436-rid18835513.guided.103, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNKKI010000112.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313611 SAMN36676436-rid18835513.denovo.116, whole genome shotgun sequence	2275..3480	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNKKI010000171.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313611 SAMN36676436-rid18835513.guided.119, whole genome shotgun sequence	1834..3039	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNKKI010000103.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313611 SAMN36676436-rid18835513.denovo.107, whole genome shotgun sequence	2480..3161	enterobacteriales	IncFII	96.95	262 / 261	ABNKKI010000099.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313611 SAMN36676436-rid18835513.denovo.102, whole genome shotgun sequence	1379..1640		enterobacteriales	IncFII	96.95	262 / 261	ABNKKI010000170.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313611 SAMN36676436-rid18835513.guided.103, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABNKKI010000087.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313611 SAMN36676436-rid18835513.denovo.090, whole genome shotgun sequence	2153..2525																																		avrA	ABNKKI010000007.1	39484..40353	99.655	870	0						
GCA_032414225.1_PDT001824160.1_genomic.fna	Salmonella_enterica	0.522	67.935 KB	25	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKKK010000061.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313608 SAMN36676428-rid18835473.denovo.061, whole genome shotgun sequence	12393..12830	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKKK010000161.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313608 SAMN36676428-rid18835473.guided.086, whole genome shotgun sequence	15427..15864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKKK010000002.1	99063..99932	98.966	870	0						
GCA_032414285.1_PDT001824156.1_genomic.fna	Salmonella_enterica	0.5229	53.018 KB	26	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNKKL010000062.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313603 SAMN36676418-rid18835433.denovo.063, whole genome shotgun sequence	11319..11756	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKKL010000120.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313603 SAMN36676418-rid18835433.denovo.124, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNKKL010000120.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313603 SAMN36676418-rid18835433.denovo.124, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNKKL010000120.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313603 SAMN36676418-rid18835433.denovo.124, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNKKL010000120.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313603 SAMN36676418-rid18835433.denovo.124, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNKKL010000120.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313603 SAMN36676418-rid18835433.denovo.124, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNKKL010000153.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313603 SAMN36676418-rid18835433.guided.108, whole genome shotgun sequence	8082..8519	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKKL010000154.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313603 SAMN36676418-rid18835433.guided.122, whole genome shotgun sequence	1512..2348	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNKKL010000154.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313603 SAMN36676418-rid18835433.guided.122, whole genome shotgun sequence	710..1512	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNKKL010000154.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313603 SAMN36676418-rid18835433.guided.122, whole genome shotgun sequence	709..1512	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNKKL010000154.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313603 SAMN36676418-rid18835433.guided.122, whole genome shotgun sequence	709..1512	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNKKL010000154.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313603 SAMN36676418-rid18835433.guided.122, whole genome shotgun sequence	709..1512	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNKKL010000118.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313603 SAMN36676418-rid18835433.denovo.121, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKKL010000155.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313603 SAMN36676418-rid18835433.guided.134, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKKL010000035.1	39546..40415	99.655	870	0						
GCA_032414305.1_PDT001824152.1_genomic.fna	Salmonella_enterica	0.5239	57.233 KB	23	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	-:l,v:1,6	2	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	-	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:l,v:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKKN010000062.1 Salmonella enterica subsp. enterica serovar London strain FSIS22313605 SAMN36676422-rid18835403.denovo.063, whole genome shotgun sequence	11351..11788	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.75	816/816	ABNKKN010000104.1 Salmonella enterica subsp. enterica serovar London strain FSIS22313605 SAMN36676422-rid18835403.denovo.107, whole genome shotgun sequence	1930..2745	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EF015636	aac(6')-Iaa	99.77	438/438	ABNKKN010000133.1 Salmonella enterica subsp. enterica serovar London strain FSIS22313605 SAMN36676422-rid18835403.guided.062, whole genome shotgun sequence	15468..15905	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.75	816/816	ABNKKN010000136.1 Salmonella enterica subsp. enterica serovar London strain FSIS22313605 SAMN36676422-rid18835403.guided.115, whole genome shotgun sequence	2819..3634	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EF015636																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNKKN010000104.1 Salmonella enterica subsp. enterica serovar London strain FSIS22313605 SAMN36676422-rid18835403.denovo.107, whole genome shotgun sequence	810..940																																																						avrA	ABNKKN010000006.1	35245..36114	99.425	870	0						
GCA_032414365.1_PDT001824143.1_genomic.fna	Salmonella_enterica	0.5207	517.55 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKKS010000001.1 Salmonella enterica strain PNUSAS365077 SAMN36676401-rid18835313.denovo.01, whole genome shotgun sequence	383862..384299	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKKS010000039.1 Salmonella enterica strain PNUSAS365077 SAMN36676401-rid18835313.guided.16, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKKS010000002.1	504340..505210	99.196	871	0						
GCA_032414385.1_PDT001824145.1_genomic.fna	Salmonella_enterica	0.5231	54.69 KB	27	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKKQ010000011.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313600 SAMN36676410-rid18835333.denovo.011, whole genome shotgun sequence	17745..18182	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKKQ010000184.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313600 SAMN36676410-rid18835333.guided.035, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKKQ010000146.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313600 SAMN36676410-rid18835333.denovo.149, whole genome shotgun sequence	1457..2099	enterobacteriales	IncFII(S)	100	262 / 262	ABNKKQ010000140.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313600 SAMN36676410-rid18835333.denovo.143, whole genome shotgun sequence	1102..1363																																																avrA	ABNKKQ010000037.1	43666..44535	99.54	870	0						
GCA_032414405.1_PDT001824144.1_genomic.fna	Salmonella_enterica	0.5232	65.086 KB	22	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNKKR010000022.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313598 SAMN36676405-rid18835323.denovo.022, whole genome shotgun sequence	12417..12854	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNKKR010000145.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313598 SAMN36676405-rid18835323.guided.109, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNKKR010000110.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313598 SAMN36676405-rid18835323.denovo.113, whole genome shotgun sequence	557..687																																																						avrA	ABNKKR010000008.1	105420..106289	99.54	870	0						
GCA_032414425.1_PDT001824142.1_genomic.fna	Salmonella_enterica	0.5227	68.204 KB	23	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(3)-IV,fosA3,fosA3,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKKT010000025.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.denovo.025, whole genome shotgun sequence	52333..52770	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKKT010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.denovo.068, whole genome shotgun sequence	22780..23571	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKKT010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.denovo.068, whole genome shotgun sequence	22780..23571	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNKKT010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.denovo.108, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNKKT010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.denovo.108, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNKKT010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.guided.032, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKKT010000139.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.guided.095, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKKT010000139.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.guided.095, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNKKT010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.guided.113, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNKKT010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.guided.113, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	aac(3)-IV	99.87	777/777	ABNKKT010000143.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.guided.137, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	fosA3	100	417/417	ABNKKT010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.denovo.120, whole genome shotgun sequence	320..736	Fosfomycin	AB522970	fosA3	100	417/417	ABNKKT010000142.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.guided.119, whole genome shotgun sequence	361..777	Fosfomycin	AB522970	floR	98.19	1214/1215	ABNKKT010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.denovo.104, whole genome shotgun sequence	2840..4053	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNKKT010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.guided.105, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNKKT010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.denovo.068, whole genome shotgun sequence	21436..22275	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKKT010000139.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.guided.095, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKKT010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.denovo.068, whole genome shotgun sequence	7720..8919	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKKT010000138.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.guided.091, whole genome shotgun sequence	1858..3057	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKKT010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313599 SAMN36676407-rid18835303.denovo.097, whole genome shotgun sequence	5580..6139																																																						avrA	ABNKKT010000007.1	39536..40405	99.655	870	0						
GCA_032414445.1_PDT001824141.1_genomic.fna	Salmonella_enterica	0.5232	60.396 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKKW010000012.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313601 SAMN36676412-rid18835293.denovo.012, whole genome shotgun sequence	83772..84209	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKKW010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313601 SAMN36676412-rid18835293.denovo.088, whole genome shotgun sequence	11962..12753	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKKW010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313601 SAMN36676412-rid18835293.denovo.088, whole genome shotgun sequence	11962..12753	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNKKW010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313601 SAMN36676412-rid18835293.guided.070, whole genome shotgun sequence	14199..14636	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKKW010000165.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313601 SAMN36676412-rid18835293.guided.105, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKKW010000165.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313601 SAMN36676412-rid18835293.guided.105, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNKKW010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313601 SAMN36676412-rid18835293.denovo.129, whole genome shotgun sequence	625..1500	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNKKW010000169.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313601 SAMN36676412-rid18835293.guided.127, whole genome shotgun sequence	664..1539	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNKKW010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313601 SAMN36676412-rid18835293.denovo.141, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABNKKW010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313601 SAMN36676412-rid18835293.guided.140, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABNKKW010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313601 SAMN36676412-rid18835293.denovo.088, whole genome shotgun sequence	10618..11457	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKKW010000165.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313601 SAMN36676412-rid18835293.guided.105, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKKW010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313601 SAMN36676412-rid18835293.denovo.098, whole genome shotgun sequence	1822..3021	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKKW010000168.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313601 SAMN36676412-rid18835293.guided.115, whole genome shotgun sequence	1853..3052	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKKW010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313601 SAMN36676412-rid18835293.denovo.132, whole genome shotgun sequence	906..1465																																																						avrA	ABNKKW010000019.1	61495..62364	99.655	870	0						
GCA_032414485.1_PDT001824140.1_genomic.fna	Salmonella_enterica	0.5211	386.287 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKKX010000001.1 Salmonella enterica strain PNUSAS365079 SAMN36676398-rid18835283.denovo.01, whole genome shotgun sequence	644481..644918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKKX010000027.1 Salmonella enterica strain PNUSAS365079 SAMN36676398-rid18835283.guided.19, whole genome shotgun sequence	16416..16853	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032414545.1_PDT001824136.1_genomic.fna	Salmonella_enterica	0.5207	406.452 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		4	IncFIB(S),IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKKZ010000001.1 Salmonella enterica strain PNUSAS365078 SAMN36676402-rid18835243.denovo.01, whole genome shotgun sequence	774552..774989	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKKZ010000018.1 Salmonella enterica strain PNUSAS365078 SAMN36676402-rid18835243.denovo.18, whole genome shotgun sequence	19105..19941	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKKZ010000018.1 Salmonella enterica strain PNUSAS365078 SAMN36676402-rid18835243.denovo.18, whole genome shotgun sequence	19941..20744	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNKKZ010000032.1 Salmonella enterica strain PNUSAS365078 SAMN36676402-rid18835243.guided.22, whole genome shotgun sequence	7213..8049	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKKZ010000032.1 Salmonella enterica strain PNUSAS365078 SAMN36676402-rid18835243.guided.22, whole genome shotgun sequence	6410..7213	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNKKZ010000034.1 Salmonella enterica strain PNUSAS365078 SAMN36676402-rid18835243.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNKKZ010000025.1 Salmonella enterica strain PNUSAS365078 SAMN36676402-rid18835243.denovo.30, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNKKZ010000035.1 Salmonella enterica strain PNUSAS365078 SAMN36676402-rid18835243.guided.29, whole genome shotgun sequence	3944..4804	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNKKZ010000018.1 Salmonella enterica strain PNUSAS365078 SAMN36676402-rid18835243.denovo.18, whole genome shotgun sequence	20805..21620	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNKKZ010000032.1 Salmonella enterica strain PNUSAS365078 SAMN36676402-rid18835243.guided.22, whole genome shotgun sequence	5534..6349	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNKKZ010000018.1 Salmonella enterica strain PNUSAS365078 SAMN36676402-rid18835243.denovo.18, whole genome shotgun sequence	25133..26332	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKKZ010000032.1 Salmonella enterica strain PNUSAS365078 SAMN36676402-rid18835243.guided.22, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKKZ010000021.1 Salmonella enterica strain PNUSAS365078 SAMN36676402-rid18835243.denovo.23, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNKKZ010000023.1 Salmonella enterica strain PNUSAS365078 SAMN36676402-rid18835243.denovo.27, whole genome shotgun sequence	3410..3671		enterobacteriales	IncN	100	514 / 514	ABNKKZ010000018.1 Salmonella enterica strain PNUSAS365078 SAMN36676402-rid18835243.denovo.18, whole genome shotgun sequence	822..1335		enterobacteriales	IncX1	98.66	374 / 374	ABNKKZ010000015.1 Salmonella enterica strain PNUSAS365078 SAMN36676402-rid18835243.denovo.15, whole genome shotgun sequence	6057..6430																																		avrA	ABNKKZ010000002.1	552869..553738	99.54	870	0						
GCA_032414565.1_PDT001824135.1_genomic.fna	Salmonella_enterica	0.5201	370.32 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKLB010000002.1 Salmonella enterica strain PNUSAS365080 SAMN36676400-rid18835233.denovo.02, whole genome shotgun sequence	521901..522338	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKLB010000055.1 Salmonella enterica strain PNUSAS365080 SAMN36676400-rid18835233.guided.19, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNKLB010000023.1 Salmonella enterica strain PNUSAS365080 SAMN36676400-rid18835233.denovo.25, whole genome shotgun sequence	5946..6588																																																						avrA	ABNKLB010000004.1	140313..141182	99.425	870	0						
GCA_032414645.1_PDT001824131.1_genomic.fna	Salmonella_enterica	0.5211	44.171 KB	32	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKLE010000061.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313591 SAMN36676403-rid18835193.denovo.061, whole genome shotgun sequence	11332..11769	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKLE010000243.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313591 SAMN36676403-rid18835193.guided.065, whole genome shotgun sequence	13706..14143	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNKLE010000158.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313591 SAMN36676403-rid18835193.denovo.160, whole genome shotgun sequence	763..893	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNKLE010000166.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313591 SAMN36676403-rid18835193.denovo.168, whole genome shotgun sequence	2792..2933		enterobacteriales	IncX1	100	373 / 373	ABNKLE010000195.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313591 SAMN36676403-rid18835193.denovo.197, whole genome shotgun sequence	1126..1498																																									avrA	ABNKLE010000033.1	39484..40353	99.655	870	0						
GCA_032414665.1_PDT001824130.1_genomic.fna	Salmonella_enterica	0.5219	72.864 KB	24	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKLF010000023.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313588 SAMN36676395-rid18835183.denovo.023, whole genome shotgun sequence	20239..20676	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKLF010000146.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313588 SAMN36676395-rid18835183.guided.061, whole genome shotgun sequence	12388..12825	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.75	321 / 374	ABNKLF010000145.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313588 SAMN36676395-rid18835183.denovo.148, whole genome shotgun sequence	299..619																																																						avrA	ABNKLF010000039.1	43555..44424	99.54	870	0						
GCA_032414685.1_PDT001824128.1_genomic.fna	Salmonella_enterica	0.5231	65.801 KB	24	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_58,thrA_4	412	-:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC,ColpVC	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNKLH010000056.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22313590 SAMN36676397-rid18835163.denovo.057, whole genome shotgun sequence	11327..11764	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNKLH010000137.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22313590 SAMN36676397-rid18835163.guided.055, whole genome shotgun sequence	15437..15874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	96.89	193 / 193	ABNKLH010000119.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22313590 SAMN36676397-rid18835163.denovo.122, whole genome shotgun sequence	1524..1716	enterobacteriales	ColpVC	98.96	193 / 193	ABNKLH010000120.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22313590 SAMN36676397-rid18835163.denovo.123, whole genome shotgun sequence	805..997																																																avrA	ABNKLH010000011.1	81877..82746	99.54	870	0						
GCA_032414705.1_PDT001824129.1_genomic.fna	Salmonella_enterica	0.5225	58.316 KB	24	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	-:d:1,2	4	aac(6')-Iaa,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	4	Col(pHAD28),ColRNAI,IncI1-I(Alpha),IncQ1,IncQ1	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	-	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNKLG010000004.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313587 SAMN36676394-rid18835173.denovo.004, whole genome shotgun sequence	83611..84048	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	671/804	ABNKLG010000102.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313587 SAMN36676394-rid18835173.denovo.106, whole genome shotgun sequence	8803..9473	Streptomycin	AF321551	aac(6')-Iaa	98.17	438/438	ABNKLG010000158.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313587 SAMN36676394-rid18835173.guided.100, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	695/804	ABNKLG010000159.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313587 SAMN36676394-rid18835173.guided.105, whole genome shotgun sequence	7879..8573	Streptomycin	AF321551	sul2	100	816/816	ABNKLG010000102.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313587 SAMN36676394-rid18835173.denovo.106, whole genome shotgun sequence	85..900	Sulfamethoxazole	FN995456	sul2	100	816/816	ABNKLG010000159.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313587 SAMN36676394-rid18835173.guided.105, whole genome shotgun sequence	7003..7818	Sulfamethoxazole	FN995456	tet(A)	99.92	1200/1200	ABNKLG010000102.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313587 SAMN36676394-rid18835173.denovo.106, whole genome shotgun sequence	6703..7902	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNKLG010000159.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313587 SAMN36676394-rid18835173.guided.105, whole genome shotgun sequence	1..1200	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNKLG010000114.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313587 SAMN36676394-rid18835173.denovo.118, whole genome shotgun sequence	239..369	enterobacteriales	ColRNAI	90.08	131 / 130	ABNKLG010000117.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313587 SAMN36676394-rid18835173.denovo.121, whole genome shotgun sequence	3981..4111		enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	ABNKLG010000119.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313587 SAMN36676394-rid18835173.denovo.123, whole genome shotgun sequence	226..365		enterobacteriales	IncQ1	100	796 / 796	ABNKLG010000102.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313587 SAMN36676394-rid18835173.denovo.106, whole genome shotgun sequence	2240..3035		enterobacteriales	IncQ1	100	796 / 796	ABNKLG010000159.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313587 SAMN36676394-rid18835173.guided.105, whole genome shotgun sequence	4868..5663																											avrA	ABNKLG010000015.1	81527..82396	99.425	870	0						
GCA_032414725.1_PDT001824127.1_genomic.fna	Salmonella_enterica	0.5229	61.818 KB	27	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKLI010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313589 SAMN36676396-rid18835153.denovo.061, whole genome shotgun sequence	12455..12892	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKLI010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313589 SAMN36676396-rid18835153.denovo.076, whole genome shotgun sequence	18453..19244	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKLI010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313589 SAMN36676396-rid18835153.denovo.076, whole genome shotgun sequence	18453..19244	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNKLI010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313589 SAMN36676396-rid18835153.guided.077, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKLI010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313589 SAMN36676396-rid18835153.guided.077, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNKLI010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313589 SAMN36676396-rid18835153.guided.100, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNKLI010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313589 SAMN36676396-rid18835153.denovo.076, whole genome shotgun sequence	17109..17948	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKLI010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313589 SAMN36676396-rid18835153.guided.077, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKLI010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313589 SAMN36676396-rid18835153.denovo.076, whole genome shotgun sequence	3394..4593	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKLI010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313589 SAMN36676396-rid18835153.guided.077, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKLI010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313589 SAMN36676396-rid18835153.denovo.105, whole genome shotgun sequence	2322..2881																																																						avrA	ABNKLI010000006.1	81701..82570	99.655	870	0						
GCA_032414765.1_PDT001824125.1_genomic.fna	Salmonella_enterica	0.5203	363.672 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B),tet(B)	1	parC_p.T57S	3	Col(pHAD28),IncI1-I(Alpha),IncI1-I(Alpha),IncI1-I(Alpha),p0111	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKLK010000001.1 Salmonella enterica strain PNUSAS365062 SAMN36676329-rid18835133.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKLK010000039.1 Salmonella enterica strain PNUSAS365062 SAMN36676329-rid18835133.guided.25, whole genome shotgun sequence	8093..8530	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNKLK010000014.1 Salmonella enterica strain PNUSAS365062 SAMN36676329-rid18835133.denovo.14, whole genome shotgun sequence	68631..69836	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNKLK010000036.1 Salmonella enterica strain PNUSAS365062 SAMN36676329-rid18835133.guided.21, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABNKLK010000037.1 Salmonella enterica strain PNUSAS365062 SAMN36676329-rid18835133.guided.22, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNKLK010000027.1 Salmonella enterica strain PNUSAS365062 SAMN36676329-rid18835133.denovo.32, whole genome shotgun sequence	547..675	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNKLK010000014.1 Salmonella enterica strain PNUSAS365062 SAMN36676329-rid18835133.denovo.14, whole genome shotgun sequence	76222..76363		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNKLK010000036.1 Salmonella enterica strain PNUSAS365062 SAMN36676329-rid18835133.guided.21, whole genome shotgun sequence	3169..3310		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNKLK010000037.1 Salmonella enterica strain PNUSAS365062 SAMN36676329-rid18835133.guided.22, whole genome shotgun sequence	3169..3310		enterobacteriales	p0111	99.44	885 / 885	ABNKLK010000015.1 Salmonella enterica strain PNUSAS365062 SAMN36676329-rid18835133.denovo.15, whole genome shotgun sequence	64790..65674																											avrA	ABNKLK010000008.1	39350..40219	98.966	870	0						
GCA_032414815.1_PDT001824126.1_genomic.fna	Salmonella_enterica	0.5221	87.363 KB	18	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNKLJ010000002.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313586 SAMN36676331-rid18835143.denovo.002, whole genome shotgun sequence	206108..206545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNKLJ010000114.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313586 SAMN36676331-rid18835143.guided.067, whole genome shotgun sequence	15579..16016	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNKLJ010000085.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313586 SAMN36676331-rid18835143.denovo.088, whole genome shotgun sequence	239..369																																																						avrA	ABNKLJ010000005.1	93878..94747	99.425	870	0						
GCA_032416665.1_PDT001824124.1_genomic.fna	Salmonella_enterica	0.5212	478.653 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKLL010000001.1 Salmonella enterica strain PNUSAS365061 SAMN36676204-rid18835123.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKLL010000027.1 Salmonella enterica strain PNUSAS365061 SAMN36676204-rid18835123.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKLL010000014.1 Salmonella enterica strain PNUSAS365061 SAMN36676204-rid18835123.denovo.15, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNKLL010000018.1 Salmonella enterica strain PNUSAS365061 SAMN36676204-rid18835123.denovo.21, whole genome shotgun sequence	3446..3707																																																avrA	ABNKLL010000002.1	553636..554505	99.54	870	0						
GCA_032416685.1_PDT001824122.1_genomic.fna	Salmonella_enterica	0.5219	159.982 KB	12	aroC_1059,dnaN_206,hemD_38,hisD_16,purE_311,sucA_35,thrA_527	6975	4:l,v:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_1059	dnaN	100	100	dnaN_206	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_311	sucA	100	100	sucA_35	thrA	100	100	thrA_527	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKLN010000017.1 Salmonella enterica strain PNUSAS365057 SAMN36676201-rid18835103.denovo.17, whole genome shotgun sequence	61631..62068	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKLN010000065.1 Salmonella enterica strain PNUSAS365057 SAMN36676201-rid18835103.guided.46, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNKLN010000032.1 Salmonella enterica strain PNUSAS365057 SAMN36676201-rid18835103.denovo.32, whole genome shotgun sequence	25575..25997	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNKLN010000067.1 Salmonella enterica strain PNUSAS365057 SAMN36676201-rid18835103.guided.53, whole genome shotgun sequence	5665..6087	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKLN010000004.1	164499..165368	99.655	870	0						
GCA_032416725.1_PDT001824120.1_genomic.fna	Salmonella_enterica	0.5131	178.534 KB	8	aroC_56,dnaN_1196,hemD_29,hisD_24,purE_20,sucA_26,thrA_340	Unknown	40:z4,z24:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_56	dnaN	100	100	dnaN_1196	hemD	100	100	hemD_29	hisD	100	100	hisD_24	purE	100	100	purE_20	sucA	100	100	sucA_26	thrA	100	100	thrA_340	40	z4,z24	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 40:z4,z24:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032416765.1_PDT001824116.1_genomic.fna	Salmonella_enterica	0.5203	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKLP010000003.1 Salmonella enterica strain PNUSAS365059 SAMN36676202-rid18835043.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKLP010000039.1 Salmonella enterica strain PNUSAS365059 SAMN36676202-rid18835043.guided.18, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKLP010000005.1	174651..175519	100	869	0						
GCA_032416785.1_PDT001824115.1_genomic.fna	Salmonella_enterica	0.5229	354.558 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNKLR010000004.1 Salmonella enterica strain PNUSAS365041 SAMN36675357-rid18835033.denovo.04, whole genome shotgun sequence	293240..293677	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNKLR010000032.1 Salmonella enterica strain PNUSAS365041 SAMN36675357-rid18835033.guided.24, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKLR010000003.1	406221..407089	99.425	870	0						
GCA_032416795.1_PDT001824114.1_genomic.fna	Salmonella_enterica	0.5213	305.592 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKLS010000002.1 Salmonella enterica strain PNUSAS365060 SAMN36676200-rid18835023.denovo.02, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKLS010000031.1 Salmonella enterica strain PNUSAS365060 SAMN36676200-rid18835023.guided.23, whole genome shotgun sequence	8022..8459	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKLS010000017.1 Salmonella enterica strain PNUSAS365060 SAMN36676200-rid18835023.denovo.17, whole genome shotgun sequence	40547..41189	enterobacteriales	IncFII(S)	100	262 / 262	ABNKLS010000022.1 Salmonella enterica strain PNUSAS365060 SAMN36676200-rid18835023.denovo.25, whole genome shotgun sequence	3414..3675																																																avrA	ABNKLS010000003.1	553077..553946	99.54	870	0						
GCA_032416825.1_PDT001824112.1_genomic.fna	Salmonella_enterica	0.5211	456.225 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKLU010000005.1 Salmonella enterica strain PNUSAS365039 SAMN36675355-rid18835003.denovo.05, whole genome shotgun sequence	162522..162959	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKLU010000027.1 Salmonella enterica strain PNUSAS365039 SAMN36675355-rid18835003.guided.20, whole genome shotgun sequence	5509..5946	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKLU010000018.1 Salmonella enterica strain PNUSAS365039 SAMN36675355-rid18835003.denovo.18, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNKLU010000018.1 Salmonella enterica strain PNUSAS365039 SAMN36675355-rid18835003.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABNKLU010000001.1	584922..585791	99.54	870	0						
GCA_032416845.1_PDT001824113.1_genomic.fna	Salmonella_enterica	0.5217	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		4	Col(pHAD28),Col(pHAD28),ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKLT010000002.1 Salmonella enterica strain PNUSAS365040 SAMN36675356-rid18835013.denovo.02, whole genome shotgun sequence	68382..68819	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKLT010000051.1 Salmonella enterica strain PNUSAS365040 SAMN36675356-rid18835013.guided.27, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNKLT010000034.1 Salmonella enterica strain PNUSAS365040 SAMN36675356-rid18835013.denovo.37, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNKLT010000052.1 Salmonella enterica strain PNUSAS365040 SAMN36675356-rid18835013.guided.43, whole genome shotgun sequence	1211..1855	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNKLT010000034.1 Salmonella enterica strain PNUSAS365040 SAMN36675356-rid18835013.denovo.37, whole genome shotgun sequence	1519..1649	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNKLT010000052.1 Salmonella enterica strain PNUSAS365040 SAMN36675356-rid18835013.guided.43, whole genome shotgun sequence	555..685		enterobacteriales	ColRNAI	90.08	131 / 130	ABNKLT010000036.1 Salmonella enterica strain PNUSAS365040 SAMN36675356-rid18835013.denovo.39, whole genome shotgun sequence	810..940		enterobacteriales	IncFIB(S)	100	643 / 643	ABNKLT010000016.1 Salmonella enterica strain PNUSAS365040 SAMN36675356-rid18835013.denovo.16, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	ABNKLT010000016.1 Salmonella enterica strain PNUSAS365040 SAMN36675356-rid18835013.denovo.16, whole genome shotgun sequence	30407..30668																											avrA	ABNKLT010000003.1	401395..402263	100	869	0						
GCA_032418075.1_PDT001824107.1_genomic.fna	Salmonella_enterica	0.5211	469.751 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKLZ010000001.1 Salmonella enterica strain PNUSAS365038 SAMN36675337-rid18834953.denovo.01, whole genome shotgun sequence	771992..772429	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKLZ010000028.1 Salmonella enterica strain PNUSAS365038 SAMN36675337-rid18834953.guided.18, whole genome shotgun sequence	23090..23527	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKLZ010000017.1 Salmonella enterica strain PNUSAS365038 SAMN36675337-rid18834953.denovo.17, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABNKLZ010000017.1 Salmonella enterica strain PNUSAS365038 SAMN36675337-rid18834953.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABNKLZ010000012.1	39351..40220	99.54	870	0						
GCA_032418135.1_PDT001824103.1_genomic.fna	Salmonella_enterica	0.5212	406.145 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKMD010000004.1 Salmonella enterica strain PNUSAS365017 SAMN36675310-rid18834913.denovo.04, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKMD010000034.1 Salmonella enterica strain PNUSAS365017 SAMN36675310-rid18834913.guided.25, whole genome shotgun sequence	11752..12189	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKMD010000022.1 Salmonella enterica strain PNUSAS365017 SAMN36675310-rid18834913.denovo.23, whole genome shotgun sequence	6838..7480	enterobacteriales	IncFII(S)	100	262 / 262	ABNKMD010000024.1 Salmonella enterica strain PNUSAS365017 SAMN36675310-rid18834913.denovo.27, whole genome shotgun sequence	3392..3653																																																avrA	ABNKMD010000001.1	585103..585972	99.54	870	0						
GCA_032418155.1_PDT001824106.1_genomic.fna	Salmonella_enterica	0.5213	196.122 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKMA010000005.1 Salmonella enterica strain PNUSAS365037 SAMN36675326-rid18834943.denovo.05, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKMA010000060.1 Salmonella enterica strain PNUSAS365037 SAMN36675326-rid18834943.guided.30, whole genome shotgun sequence	30133..30570	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKMA010000019.1 Salmonella enterica strain PNUSAS365037 SAMN36675326-rid18834943.denovo.19, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNKMA010000019.1 Salmonella enterica strain PNUSAS365037 SAMN36675326-rid18834943.denovo.19, whole genome shotgun sequence	30407..30668		enterobacteriales	IncI(Gamma)	97.81	137 / 141	ABNKMA010000022.1 Salmonella enterica strain PNUSAS365037 SAMN36675326-rid18834943.denovo.22, whole genome shotgun sequence	71284..71420																																									avrA	ABNKMA010000017.1	39598..40466	100	869	0						
GCA_032418195.1_PDT001824100.1_genomic.fna	Salmonella_enterica	0.5213	210.039 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKMF010000005.1 Salmonella enterica strain PNUSAS364997 SAMN36675272-rid18834883.denovo.05, whole genome shotgun sequence	52410..52847	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKMF010000042.1 Salmonella enterica strain PNUSAS364997 SAMN36675272-rid18834883.guided.33, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKMF010000034.1 Salmonella enterica strain PNUSAS364997 SAMN36675272-rid18834883.denovo.36, whole genome shotgun sequence	6839..7481	enterobacteriales	IncFII(S)	100	262 / 262	ABNKMF010000035.1 Salmonella enterica strain PNUSAS364997 SAMN36675272-rid18834883.denovo.38, whole genome shotgun sequence	3423..3684																																																avrA	ABNKMF010000006.1	175197..176066	99.54	870	0						
GCA_032418215.1_PDT001824101.1_genomic.fna	Salmonella_enterica	0.5211	412.247 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKME010000001.1 Salmonella enterica strain PNUSAS365018 SAMN36675277-rid18834893.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKME010000030.1 Salmonella enterica strain PNUSAS365018 SAMN36675277-rid18834893.guided.17, whole genome shotgun sequence	25647..26084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKME010000020.1 Salmonella enterica strain PNUSAS365018 SAMN36675277-rid18834893.denovo.21, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNKME010000022.1 Salmonella enterica strain PNUSAS365018 SAMN36675277-rid18834893.denovo.24, whole genome shotgun sequence	3382..3643																																																avrA	ABNKME010000006.1	175109..175978	99.54	870	0						
GCA_032418575.1_PDT001824097.1_genomic.fna	Salmonella_enterica	0.5216	192.012 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKMI010000001.1 Salmonella enterica strain PNUSAS365019 SAMN36675275-rid18834853.denovo.01, whole genome shotgun sequence	144042..144479	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKMI010000052.1 Salmonella enterica strain PNUSAS365019 SAMN36675275-rid18834853.guided.23, whole genome shotgun sequence	38884..39321	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKMI010000031.1 Salmonella enterica strain PNUSAS365019 SAMN36675275-rid18834853.denovo.33, whole genome shotgun sequence	24689..25331	enterobacteriales	IncFII(S)	100	262 / 262	ABNKMI010000031.1 Salmonella enterica strain PNUSAS365019 SAMN36675275-rid18834853.denovo.33, whole genome shotgun sequence	9343..9604																																																avrA	ABNKMI010000007.1	39348..40217	99.885	870	0						
GCA_032418595.1_PDT001824095.1_genomic.fna	Salmonella_enterica	0.5212	375.786 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKMK010000002.1 Salmonella enterica strain PNUSAS365002 SAMN36675269-rid18834833.denovo.02, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKMK010000034.1 Salmonella enterica strain PNUSAS365002 SAMN36675269-rid18834833.guided.25, whole genome shotgun sequence	3400..3837	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKMK010000020.1 Salmonella enterica strain PNUSAS365002 SAMN36675269-rid18834833.denovo.20, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNKMK010000020.1 Salmonella enterica strain PNUSAS365002 SAMN36675269-rid18834833.denovo.20, whole genome shotgun sequence	5032..5293																																																avrA	ABNKMK010000001.1	585418..586287	99.54	870	0						
GCA_032418615.1_PDT001824092.1_genomic.fna	Salmonella_enterica	0.5216	189.674 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKMM010000003.1 Salmonella enterica strain PNUSAS365004 SAMN36675265-rid18834803.denovo.03, whole genome shotgun sequence	17254..17691	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKMM010000060.1 Salmonella enterica strain PNUSAS365004 SAMN36675265-rid18834803.guided.45, whole genome shotgun sequence	9965..10402	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKMM010000042.1 Salmonella enterica strain PNUSAS365004 SAMN36675265-rid18834803.denovo.44, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNKMM010000044.1 Salmonella enterica strain PNUSAS365004 SAMN36675265-rid18834803.denovo.47, whole genome shotgun sequence	3859..4120																																																avrA	ABNKMM010000005.1	140720..141589	99.54	870	0						
GCA_032418655.1_PDT001824093.1_genomic.fna	Salmonella_enterica	0.5214	152.954 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKML010000020.1 Salmonella enterica strain PNUSAS364998 SAMN36675271-rid18834813.denovo.20, whole genome shotgun sequence	52338..52775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKML010000051.1 Salmonella enterica strain PNUSAS364998 SAMN36675271-rid18834813.guided.36, whole genome shotgun sequence	13975..14412	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKML010000033.1 Salmonella enterica strain PNUSAS364998 SAMN36675271-rid18834813.denovo.33, whole genome shotgun sequence	9172..9814	enterobacteriales	IncFII(S)	100	262 / 262	ABNKML010000036.1 Salmonella enterica strain PNUSAS364998 SAMN36675271-rid18834813.denovo.39, whole genome shotgun sequence	3426..3687																																																avrA	ABNKML010000014.1	43716..44585	99.54	870	0						
GCA_032418675.1_PDT001824096.1_genomic.fna	Salmonella_enterica	0.5205	284.266 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKMJ010000001.1 Salmonella enterica strain PNUSAS365020 SAMN36675276-rid18834843.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKMJ010000034.1 Salmonella enterica strain PNUSAS365020 SAMN36675276-rid18834843.guided.24, whole genome shotgun sequence	18525..18962	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKMJ010000023.1 Salmonella enterica strain PNUSAS365020 SAMN36675276-rid18834843.denovo.26, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNKMJ010000019.1 Salmonella enterica strain PNUSAS365020 SAMN36675276-rid18834843.denovo.20, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNKMJ010000020.1 Salmonella enterica strain PNUSAS365020 SAMN36675276-rid18834843.denovo.21, whole genome shotgun sequence	32011..32384																																									avrA	ABNKMJ010000006.1	174749..175618	99.54	870	0						
GCA_032418695.1_PDT001824091.1_genomic.fna	Salmonella_enterica	0.5224	191.171 KB	7	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNKMO010000019.1 Salmonella enterica strain PNUSAS365001 SAMN36675266-rid18834793.denovo.19, whole genome shotgun sequence	25626..26063	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNKMO010000048.1 Salmonella enterica strain PNUSAS365001 SAMN36675266-rid18834793.guided.36, whole genome shotgun sequence	14017..14454	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKMO010000010.1	94977..95845	99.195	870	0						
GCA_032418715.1_PDT001824090.1_genomic.fna	Salmonella_enterica	0.5211	199.732 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKMN010000001.1 Salmonella enterica strain PNUSAS365003 SAMN36675270-rid18834783.denovo.01, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKMN010000049.1 Salmonella enterica strain PNUSAS365003 SAMN36675270-rid18834783.guided.31, whole genome shotgun sequence	24924..25361	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKMN010000025.1 Salmonella enterica strain PNUSAS365003 SAMN36675270-rid18834783.denovo.25, whole genome shotgun sequence	44772..45414	enterobacteriales	IncFII(S)	100	262 / 262	ABNKMN010000025.1 Salmonella enterica strain PNUSAS365003 SAMN36675270-rid18834783.denovo.25, whole genome shotgun sequence	29426..29687		enterobacteriales	IncFII(p96A)	99.25	534 / 534	ABNKMN010000028.1 Salmonella enterica strain PNUSAS365003 SAMN36675270-rid18834783.denovo.28, whole genome shotgun sequence	14706..15239																																									avrA	ABNKMN010000002.1	452161..453030	99.885	870	0						
GCA_032418755.1_PDT001824089.1_genomic.fna	Salmonella_enterica	0.5211	305.573 KB	5	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKMQ010000001.1 Salmonella enterica strain PNUSAS364999 SAMN36675268-rid18834773.denovo.01, whole genome shotgun sequence	494284..494721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKMQ010000037.1 Salmonella enterica strain PNUSAS364999 SAMN36675268-rid18834773.guided.25, whole genome shotgun sequence	16439..16876	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKMQ010000002.1	99590..100459	98.966	870	0						
GCA_032418835.1_PDT001823972.1_genomic.fna	Salmonella_enterica	0.522	232.924 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKMW010000001.1 Salmonella enterica strain PNUSAS364899 SAMN36674722-rid18833603.denovo.01, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKMW010000038.1 Salmonella enterica strain PNUSAS364899 SAMN36674722-rid18833603.guided.22, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032418855.1_PDT001823973.1_genomic.fna	Salmonella_enterica	0.5211	394.45 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKMV010000001.1 Salmonella enterica strain PNUSAS364900 SAMN36674723-rid18833613.denovo.01, whole genome shotgun sequence	398384..398821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNKMV010000026.1 Salmonella enterica strain PNUSAS364900 SAMN36674723-rid18833613.guided.15, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKMV010000005.1	193945..194813	99.425	870	0						
GCA_032419795.1_PDT001823917.1_genomic.fna	Salmonella_enterica	0.5202	324.062 KB	5	aroC_62,dnaN_95,hemD_54,hisD_96,purE_100,sucA_9,thrA_100	279	4:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_62	dnaN	100	100	dnaN_95	hemD	100	100	hemD_54	hisD	100	100	hisD_96	purE	100	100	purE_100	sucA	100	100	sucA_9	thrA	100	100	thrA_100	4	d	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:d:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNKOC010000001.1 Salmonella enterica strain PNUSAS364854 SAMN36673822-rid18833163.denovo.01, whole genome shotgun sequence	140760..141197	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNKOC010000036.1 Salmonella enterica strain PNUSAS364854 SAMN36673822-rid18833163.guided.26, whole genome shotgun sequence	2238..2675	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKOC010000002.1	146850..147719	99.31	870	0						
GCA_032419875.1_PDT001823913.1_genomic.fna	Salmonella_enterica	0.521	476.677 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNKOD010000001.1 Salmonella enterica strain PNUSAS364864 SAMN36673823-rid18832593.denovo.01, whole genome shotgun sequence	477889..478326	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNKOD010000031.1 Salmonella enterica strain PNUSAS364864 SAMN36673823-rid18832593.guided.17, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKOD010000002.1	145182..146051	99.31	870	0						
GCA_032419895.1_PDT001823916.1_genomic.fna	Salmonella_enterica	0.5215	367.715 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKOB010000011.1 Salmonella enterica strain PNUSAS364855 SAMN36673824-rid18832623.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKOB010000034.1 Salmonella enterica strain PNUSAS364855 SAMN36673824-rid18832623.guided.28, whole genome shotgun sequence	2332..2769	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKOB010000019.1 Salmonella enterica strain PNUSAS364855 SAMN36673824-rid18832623.denovo.19, whole genome shotgun sequence	34957..35490																																																						avrA	ABNKOB010000003.1	39468..40334	98.966	870	0						
GCA_032419925.1_PDT001823912.1_genomic.fna	Salmonella_enterica	0.5207	695.726 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKOE010000001.1 Salmonella enterica strain PNUSAS364861 SAMN36673825-rid18833153.denovo.01, whole genome shotgun sequence	642454..642891	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032419955.1_PDT001823911.1_genomic.fna	Salmonella_enterica	0.5216	729.093 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	2	IncC,IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNKOF010000001.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.denovo.01, whole genome shotgun sequence	645015..645452	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKOF010000012.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.denovo.12, whole genome shotgun sequence	33291..34127	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKOF010000012.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.denovo.12, whole genome shotgun sequence	32488..33291	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNKOF010000037.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.guided.19, whole genome shotgun sequence	16615..17451	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKOF010000037.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.guided.19, whole genome shotgun sequence	15812..16615	Streptomycin	AF321551	aac(6')-Iaa	99.54	438/438	ABNKOF010000038.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.guided.20, whole genome shotgun sequence	4097..4534	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNKOF010000012.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.denovo.12, whole genome shotgun sequence	2126..3271	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNKOF010000041.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.guided.27, whole genome shotgun sequence	729..1874	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	99.91	1146/1146	ABNKOF010000042.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.guided.28, whole genome shotgun sequence	729..1874	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.27	1214/1215	ABNKOF010000012.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.denovo.12, whole genome shotgun sequence	37263..38476	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNKOF010000040.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.guided.26, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNKOF010000012.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.denovo.12, whole genome shotgun sequence	31612..32427	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNKOF010000037.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.guided.19, whole genome shotgun sequence	14936..15751	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNKOF010000012.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.denovo.12, whole genome shotgun sequence	35388..36662	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNKOF010000037.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.guided.19, whole genome shotgun sequence	18712..19986	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncC	100	417 / 417	ABNKOF010000011.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.denovo.11, whole genome shotgun sequence	17493..17909	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNKOF010000014.1 Salmonella enterica strain PNUSAS364851 SAMN36673828-rid18832583.denovo.14, whole genome shotgun sequence	26421..26562																																																avrA	ABNKOF010000002.1	561934..562804	99.656	871	0						
GCA_032420245.1_PDT001823909.1_genomic.fna	Salmonella_enterica	0.5192	269.281 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKOG010000001.1 Salmonella enterica strain PNUSAS364844 SAMN36673831-rid18832573.denovo.01, whole genome shotgun sequence	486107..486544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKOG010000044.1 Salmonella enterica strain PNUSAS364844 SAMN36673831-rid18832573.guided.31, whole genome shotgun sequence	15380..15817	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNKOG010000005.1 Salmonella enterica strain PNUSAS364844 SAMN36673831-rid18832573.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNKOG010000046.1 Salmonella enterica strain PNUSAS364844 SAMN36673831-rid18832573.guided.34, whole genome shotgun sequence	3834..4256	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKOG010000002.1	151209..152078	99.195	870	0						
GCA_032420265.1_PDT001823907.1_genomic.fna	Salmonella_enterica	0.5217	677.081 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	-:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	-	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:m,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKOH010000001.1 Salmonella enterica strain PNUSAS364850 SAMN36673827-rid18833133.denovo.01, whole genome shotgun sequence	571079..571516	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKOH010000023.1 Salmonella enterica strain PNUSAS364850 SAMN36673827-rid18833133.guided.17, whole genome shotgun sequence	13767..14204	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032420285.1_PDT001823906.1_genomic.fna	Salmonella_enterica	0.522	521.155 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNKOI010000001.1 Salmonella enterica strain PNUSAS364857 SAMN36673818-rid18832553.denovo.01, whole genome shotgun sequence	835211..835648	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNKOI010000022.1 Salmonella enterica strain PNUSAS364857 SAMN36673818-rid18832553.guided.18, whole genome shotgun sequence	4240..4677	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKOI010000002.1	563798..564667	99.77	870	0						
GCA_032420295.1_PDT001823905.1_genomic.fna	Salmonella_enterica	0.5224	433.57 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNKOJ010000001.1 Salmonella enterica strain PNUSAS364849 SAMN36673826-rid18833123.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNKOJ010000022.1 Salmonella enterica strain PNUSAS364849 SAMN36673826-rid18833123.guided.17, whole genome shotgun sequence	5340..5777	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKOJ010000004.1	174118..174987	99.77	870	0						
GCA_032420345.1_PDT001823904.1_genomic.fna	Salmonella_enterica	0.5199	395.884 KB	5	aroC_41,dnaN_42,hemD_43*,hisD_58,purE_9,sucA_12,thrA_2	112*	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(pMET),IncI1-I(Alpha)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	99.7685185185185	100	hemD_43*	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKOL010000004.1 Salmonella enterica strain PNUSAS364865 SAMN36673817-rid18832543.denovo.04, whole genome shotgun sequence	311642..312079	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKOL010000044.1 Salmonella enterica strain PNUSAS364865 SAMN36673817-rid18832543.guided.27, whole genome shotgun sequence	11485..11922	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNKOL010000025.1 Salmonella enterica strain PNUSAS364865 SAMN36673817-rid18832543.denovo.25, whole genome shotgun sequence	5926..6568	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNKOL010000021.1 Salmonella enterica strain PNUSAS364865 SAMN36673817-rid18832543.denovo.21, whole genome shotgun sequence	18874..19456		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNKOL010000014.1 Salmonella enterica strain PNUSAS364865 SAMN36673817-rid18832543.denovo.14, whole genome shotgun sequence	18320..18461																																									avrA	ABNKOL010000001.1	671243..672112	99.425	870	0						
GCA_032420375.1_PDT001823902.1_genomic.fna	Salmonella_enterica	0.5209	209.406 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKOK010000001.1 Salmonella enterica strain PNUSAS364858 SAMN36673820-rid18833113.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKOK010000044.1 Salmonella enterica strain PNUSAS364858 SAMN36673820-rid18833113.guided.30, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKOK010000021.1 Salmonella enterica strain PNUSAS364858 SAMN36673820-rid18833113.denovo.21, whole genome shotgun sequence	2806..3339																																																						avrA	ABNKOK010000009.1	153640..154509	99.425	870	0						
GCA_032420405.1_PDT001823898.1_genomic.fna	Salmonella_enterica	0.5208	436.238 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKOM010000001.1 Salmonella enterica strain PNUSAS364859 SAMN36673815-rid18832503.denovo.01, whole genome shotgun sequence	637202..637639	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKOM010000025.1 Salmonella enterica strain PNUSAS364859 SAMN36673815-rid18832503.guided.17, whole genome shotgun sequence	38371..38808	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKOM010000014.1 Salmonella enterica strain PNUSAS364859 SAMN36673815-rid18832503.denovo.14, whole genome shotgun sequence	6118..6651																																																						avrA	ABNKOM010000009.1	150695..151565	99.196	871	0						
GCA_032420435.1_PDT001823896.1_genomic.fna	Salmonella_enterica	0.5229	291.65 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKON010000001.1 Salmonella enterica strain PNUSAS364860 SAMN36673814-rid18832493.denovo.01, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKON010000038.1 Salmonella enterica strain PNUSAS364860 SAMN36673814-rid18832493.guided.29, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032420465.1_PDT001823894.1_genomic.fna	Salmonella_enterica	0.5227	244.379 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKOP010000001.1 Salmonella enterica strain PNUSAS364219 SAMN36673789-rid18832483.denovo.01, whole genome shotgun sequence	460175..460612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKOP010000044.1 Salmonella enterica strain PNUSAS364219 SAMN36673789-rid18832483.guided.33, whole genome shotgun sequence	8211..8648	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKOP010000004.1	149828..150697	99.655	870	0						
GCA_032420495.1_PDT001823893.1_genomic.fna	Salmonella_enterica	0.521	396.537 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKOQ010000011.1 Salmonella enterica strain PNUSAS364225 SAMN36673787-rid18832473.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKOQ010000033.1 Salmonella enterica strain PNUSAS364225 SAMN36673787-rid18832473.guided.24, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKOQ010000017.1 Salmonella enterica strain PNUSAS364225 SAMN36673787-rid18832473.denovo.17, whole genome shotgun sequence	34957..35490																																																						avrA	ABNKOQ010000002.1	187683..188549	98.966	870	0						
GCA_032420605.1_PDT001823887.1_genomic.fna	Salmonella_enterica	0.5199	354.462 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKOT010000001.1 Salmonella enterica strain PNUSAS364224 SAMN36673785-rid18833053.denovo.01, whole genome shotgun sequence	477381..477818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKOT010000033.1 Salmonella enterica strain PNUSAS364224 SAMN36673785-rid18833053.guided.24, whole genome shotgun sequence	10869..11306	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKOT010000017.1 Salmonella enterica strain PNUSAS364224 SAMN36673785-rid18833053.denovo.17, whole genome shotgun sequence	6118..6651	enterobacteriales	IncX1	98.4	374 / 374	ABNKOT010000020.1 Salmonella enterica strain PNUSAS364224 SAMN36673785-rid18833053.denovo.20, whole genome shotgun sequence	6956..7329																																																avrA	ABNKOT010000010.1	150695..151565	99.196	871	0						
GCA_032420625.1_PDT001823884.1_genomic.fna	Salmonella_enterica	0.5214	406.425 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKOW010000001.1 Salmonella enterica strain PNUSAS364847 SAMN36673780-rid18832423.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKOW010000027.1 Salmonella enterica strain PNUSAS364847 SAMN36673780-rid18832423.guided.20, whole genome shotgun sequence	5615..6052	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKOW010000019.1 Salmonella enterica strain PNUSAS364847 SAMN36673780-rid18832423.denovo.19, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNKOW010000020.1 Salmonella enterica strain PNUSAS364847 SAMN36673780-rid18832423.denovo.22, whole genome shotgun sequence	3378..3639																																																avrA	ABNKOW010000002.1	553572..554441	99.54	870	0						
GCA_032420705.1_PDT001823878.1_genomic.fna	Salmonella_enterica	0.5207	278.67 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul2,sul2,sul2,tet(B),tet(B)	0		1	IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKPA010000001.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.denovo.01, whole genome shotgun sequence	581083..581520	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNKPA010000035.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.denovo.39, whole genome shotgun sequence	555..1370	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNKPA010000038.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.denovo.44, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKPA010000038.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.denovo.44, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNKPA010000057.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.guided.34, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKPA010000059.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.guided.41, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKPA010000059.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.guided.41, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNKPA010000060.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.guided.42, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKPA010000060.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.guided.42, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNKPA010000061.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.guided.50, whole genome shotgun sequence	775..1590	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin	EU722351	blaTEM-1B	100	861/861	ABNKPA010000046.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.denovo.54, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNKPA010000062.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.guided.53, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNKPA010000038.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.denovo.44, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	99.88	816/816	ABNKPA010000059.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.guided.41, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNKPA010000060.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.guided.42, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNKPA010000031.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.denovo.31, whole genome shotgun sequence	7275..8480	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNKPA010000058.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.guided.35, whole genome shotgun sequence	7025..8230	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncX1	98.66	374 / 374	ABNKPA010000027.1 Salmonella enterica strain PNUSAS364216 SAMN36673790-rid18832383.denovo.27, whole genome shotgun sequence	6956..7329																																																						avrA	ABNKPA010000010.1	93863..94732	99.885	870	0						
GCA_032420725.1_PDT001823879.1_genomic.fna	Salmonella_enterica	0.5227	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKOY010000001.1 Salmonella enterica strain PNUSAS364223 SAMN36673781-rid18832393.denovo.01, whole genome shotgun sequence	790286..790723	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKOY010000032.1 Salmonella enterica strain PNUSAS364223 SAMN36673781-rid18832393.guided.21, whole genome shotgun sequence	8846..9283	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKOY010000002.1	127651..128520	98.966	870	0						
GCA_032421005.1_PDT001823871.1_genomic.fna	Salmonella_enterica	0.5229	343.515 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKPC010000001.1 Salmonella enterica strain PNUSAS364222 SAMN36673782-rid18832323.denovo.01, whole genome shotgun sequence	173828..174265	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKPC010000037.1 Salmonella enterica strain PNUSAS364222 SAMN36673782-rid18832323.guided.25, whole genome shotgun sequence	3563..4000	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKPC010000002.1	127651..128520	98.966	870	0						
GCA_032421085.1_PDT001823870.1_genomic.fna	Salmonella_enterica	0.5218	585.664 KB	4	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_746	3848	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_746	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNKPD010000001.1 Salmonella enterica strain PNUSAS364848 SAMN36673783-rid18833003.denovo.01, whole genome shotgun sequence	755810..756247	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNKPD010000031.1 Salmonella enterica strain PNUSAS364848 SAMN36673783-rid18833003.guided.24, whole genome shotgun sequence	5008..5445	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKPD010000016.1 Salmonella enterica strain PNUSAS364848 SAMN36673783-rid18833003.denovo.16, whole genome shotgun sequence	5790..6323																																																						avrA	ABNKPD010000003.1	509662..510531	99.54	870	0						
GCA_032421485.1_PDT001823838.1_genomic.fna	Salmonella_enterica	0.5235	57.396 KB	30	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKQB010000023.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323602 SAMN36673337-rid18832073.denovo.023, whole genome shotgun sequence	48185..48622	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKQB010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323602 SAMN36673337-rid18832073.denovo.067, whole genome shotgun sequence	22673..23464	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKQB010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323602 SAMN36673337-rid18832073.denovo.067, whole genome shotgun sequence	22673..23464	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNKQB010000165.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323602 SAMN36673337-rid18832073.guided.078, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKQB010000169.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323602 SAMN36673337-rid18832073.guided.117, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKQB010000169.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323602 SAMN36673337-rid18832073.guided.117, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNKQB010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323602 SAMN36673337-rid18832073.denovo.067, whole genome shotgun sequence	21329..22168	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKQB010000169.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323602 SAMN36673337-rid18832073.guided.117, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKQB010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323602 SAMN36673337-rid18832073.denovo.067, whole genome shotgun sequence	7613..8812	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKQB010000168.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323602 SAMN36673337-rid18832073.guided.109, whole genome shotgun sequence	6949..8148	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKQB010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323602 SAMN36673337-rid18832073.denovo.098, whole genome shotgun sequence	13835..14394																																																						avrA	ABNKQB010000003.1	82020..82889	99.655	870	0						
GCA_032422485.1_PDT001823778.1_genomic.fna	Salmonella_enterica	0.5237	52.73 KB	31	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKRV010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323600 SAMN36673283-rid18832803.denovo.063, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKRV010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323600 SAMN36673283-rid18832803.denovo.082, whole genome shotgun sequence	18434..19225	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKRV010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323600 SAMN36673283-rid18832803.denovo.082, whole genome shotgun sequence	18434..19225	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNKRV010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323600 SAMN36673283-rid18832803.guided.107, whole genome shotgun sequence	1128..1919	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKRV010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323600 SAMN36673283-rid18832803.guided.107, whole genome shotgun sequence	1128..1919	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNKRV010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323600 SAMN36673283-rid18832803.guided.124, whole genome shotgun sequence	8093..8530	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNKRV010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323600 SAMN36673283-rid18832803.denovo.082, whole genome shotgun sequence	17090..17929	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKRV010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323600 SAMN36673283-rid18832803.guided.107, whole genome shotgun sequence	2424..3263	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKRV010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323600 SAMN36673283-rid18832803.denovo.082, whole genome shotgun sequence	3374..4573	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKRV010000182.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323600 SAMN36673283-rid18832803.guided.141, whole genome shotgun sequence	1392..2591	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKRV010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323600 SAMN36673283-rid18832803.denovo.108, whole genome shotgun sequence	10546..11105																																																						avrA	ABNKRV010000019.1	61168..62037	99.655	870	0						
GCA_032422605.1_PDT001823757.1_genomic.fna	Salmonella_enterica	0.522	51.005 KB	28	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKSC010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323601 SAMN36673284-rid18831463.denovo.058, whole genome shotgun sequence	15448..15885	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKSC010000187.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323601 SAMN36673284-rid18831463.guided.112, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNKSC010000099.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323601 SAMN36673284-rid18831463.denovo.099, whole genome shotgun sequence	4356..4615	enterobacteriales	IncX1	100	373 / 373	ABNKSC010000133.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323601 SAMN36673284-rid18831463.denovo.136, whole genome shotgun sequence	2153..2525																																																avrA	ABNKSC010000034.1	39484..40353	99.655	870	0						
GCA_032422645.1_PDT001823755.1_genomic.fna	Salmonella_enterica	0.5234	57.511 KB	26	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	-:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:l,v:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKSE010000021.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323599 SAMN36673282-rid18831443.denovo.021, whole genome shotgun sequence	48254..48691	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKSE010000143.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323599 SAMN36673282-rid18831443.guided.083, whole genome shotgun sequence	10869..11306	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNKSE010000110.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323599 SAMN36673282-rid18831443.denovo.113, whole genome shotgun sequence	358..488																																																																	
GCA_032422665.1_PDT001823756.1_genomic.fna	Salmonella_enterica	0.5234	62.385 KB	21	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKSD010000010.1 Salmonella enterica subsp. enterica serovar London strain FSIS12323597 SAMN36673285-rid18831453.denovo.010, whole genome shotgun sequence	56368..56805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKSD010000134.1 Salmonella enterica subsp. enterica serovar London strain FSIS12323597 SAMN36673285-rid18831453.guided.079, whole genome shotgun sequence	14539..14976	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNKSD010000103.1 Salmonella enterica subsp. enterica serovar London strain FSIS12323597 SAMN36673285-rid18831453.denovo.106, whole genome shotgun sequence	557..687	enterobacteriales	ColRNAI	90.83	109 / 130	ABNKSD010000097.1 Salmonella enterica subsp. enterica serovar London strain FSIS12323597 SAMN36673285-rid18831453.denovo.100, whole genome shotgun sequence	1016..1124																																																avrA	ABNKSD010000004.1	35283..36152	99.425	870	0						
GCA_032422745.1_PDT001823736.1_genomic.fna	Salmonella_enterica	0.5202	135.812 KB	13	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKSI010000006.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.denovo.006, whole genome shotgun sequence	152560..152997	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKSI010000048.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.denovo.051, whole genome shotgun sequence	16636..17472	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNKSI010000048.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.denovo.051, whole genome shotgun sequence	17472..18275	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNKSI010000098.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.guided.072, whole genome shotgun sequence	2084..2521	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKSI010000099.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.guided.073, whole genome shotgun sequence	2828..3664	Streptomycin	M28829	aph(3'')-Ib	99.75	804/804	ABNKSI010000099.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.guided.073, whole genome shotgun sequence	2025..2828	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNKSI010000100.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.guided.074, whole genome shotgun sequence	2828..3664	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNKSI010000100.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.guided.074, whole genome shotgun sequence	2025..2828	Streptomycin	AF321551	fosA7	96.22	423/423	ABNKSI010000001.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.denovo.001, whole genome shotgun sequence	188532..188954	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	ABNKSI010000095.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.guided.041, whole genome shotgun sequence	31420..31842	Fosfomycin	LAPJ01000014	tet(B)	100	1188/1206	ABNKSI010000077.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.denovo.084, whole genome shotgun sequence	2200..3387	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNKSI010000101.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.guided.083, whole genome shotgun sequence	2231..3436	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNKSI010000072.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.denovo.078, whole genome shotgun sequence	1831..2512	enterobacteriales	IncFII	96.95	262 / 261	ABNKSI010000048.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.denovo.051, whole genome shotgun sequence	15752..16013		enterobacteriales	IncFII	96.95	262 / 261	ABNKSI010000099.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.guided.073, whole genome shotgun sequence	4287..4548		enterobacteriales	IncFII	96.95	262 / 261	ABNKSI010000100.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.guided.074, whole genome shotgun sequence	4287..4548		enterobacteriales	IncX1	100	373 / 373	ABNKSI010000064.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12323593 SAMN36673280-rid18831273.denovo.067, whole genome shotgun sequence	2153..2525																											avrA	ABNKSI010000035.1	39385..40254	99.08	870	0						
GCA_032422785.1_PDT001823737.1_genomic.fna	Salmonella_enterica	0.5225	60.52 KB	25	aroC_46,dnaN_60,hemD_10,hisD_9,purE_6,sucA_12,thrA_17	1628	4:e,h:1,5	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	0		1	p0111	aroC	100	100	aroC_46	dnaN	100	100	dnaN_60	hemD	100	100	hemD_10	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKSJ010000013.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12323595 SAMN36673278-rid18831283.denovo.013, whole genome shotgun sequence	15451..15888	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKSJ010000140.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12323595 SAMN36673278-rid18831283.guided.083, whole genome shotgun sequence	4510..4947	Amikacin, Tobramycin	NC_003197	fosA7	99.76	423/423	ABNKSJ010000025.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12323595 SAMN36673278-rid18831283.denovo.025, whole genome shotgun sequence	17979..18401	Fosfomycin	LAPJ01000014	fosA7	99.76	423/423	ABNKSJ010000142.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12323595 SAMN36673278-rid18831283.guided.115, whole genome shotgun sequence	2197..2619	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	p0111	98.08	885 / 885	ABNKSJ010000040.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12323595 SAMN36673278-rid18831283.denovo.040, whole genome shotgun sequence	10324..11208																																																																	
GCA_032422825.1_PDT001823735.1_genomic.fna	Salmonella_enterica	0.5225	86.022 KB	18	aroC_341,dnaN_11,hemD_8,hisD_404,purE_61,sucA_504,thrA_341	2398	-:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_341	dnaN	100	100	dnaN_11	hemD	100	100	hemD_8	hisD	100	100	hisD_404	purE	100	100	purE_61	sucA	100	100	sucA_504	thrA	100	100	thrA_341	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNKSK010000047.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323594 SAMN36673281-rid18831263.denovo.049, whole genome shotgun sequence	15535..15972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNKSK010000103.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323594 SAMN36673281-rid18831263.guided.047, whole genome shotgun sequence	16445..16882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKSK010000016.1	94379..95248	98.966	870	0						
GCA_032422905.1_PDT001823734.1_genomic.fna	Salmonella_enterica	0.5231	58.474 KB	24	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNKSL010000004.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323596 SAMN36673279-rid18831253.denovo.004, whole genome shotgun sequence	15529..15966	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNKSL010000148.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323596 SAMN36673279-rid18831253.guided.117, whole genome shotgun sequence	2488..2925	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKSL010000006.1	105258..106127	99.54	870	0						
GCA_032422945.1_PDT001823733.1_genomic.fna	Salmonella_enterica	0.5229	82.392 KB	19	aroC_10,dnaN_7*,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19*	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(S)	aroC	100	100	aroC_10	dnaN	99.8003992015968	100	dnaN_7*	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKSM010000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323591 SAMN36673215-rid18831243.denovo.004, whole genome shotgun sequence	13128..13565	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKSM010000124.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323591 SAMN36673215-rid18831243.guided.047, whole genome shotgun sequence	20584..21021	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKSM010000089.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323591 SAMN36673215-rid18831243.denovo.092, whole genome shotgun sequence	6822..7464																																																						avrA	ABNKSM010000009.1	98459..99327	100	869	0						
GCA_032422965.1_PDT001823732.1_genomic.fna	Salmonella_enterica	0.5199	76.702 KB	20	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKSN010000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323592 SAMN36673216-rid18831233.denovo.009, whole genome shotgun sequence	84420..84857	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKSN010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323592 SAMN36673216-rid18831233.denovo.082, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKSN010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323592 SAMN36673216-rid18831233.denovo.082, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNKSN010000166.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323592 SAMN36673216-rid18831233.guided.052, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKSN010000168.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323592 SAMN36673216-rid18831233.guided.110, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKSN010000168.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323592 SAMN36673216-rid18831233.guided.110, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNKSN010000099.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323592 SAMN36673216-rid18831233.denovo.102, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNKSN010000169.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323592 SAMN36673216-rid18831233.guided.111, whole genome shotgun sequence	2198..3403	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNKSN010000106.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323592 SAMN36673216-rid18831233.denovo.109, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNKSN010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323592 SAMN36673216-rid18831233.denovo.082, whole genome shotgun sequence	5800..6061		enterobacteriales	IncFII	96.95	262 / 261	ABNKSN010000168.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323592 SAMN36673216-rid18831233.guided.110, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNKSN010000121.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323592 SAMN36673216-rid18831233.denovo.126, whole genome shotgun sequence	260..401		enterobacteriales	IncX1	100	373 / 373	ABNKSN010000119.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323592 SAMN36673216-rid18831233.denovo.124, whole genome shotgun sequence	2153..2525																											avrA	ABNKSN010000029.1	39484..40353	99.655	870	0						
GCA_032423005.1_PDT001823730.1_genomic.fna	Salmonella_enterica	0.5187	73.908 KB	21	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	3	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,blaCMY-2,fosA7,fosA7	1	parC_p.T57S	2	Col(pHAD28),IncX4,IncX4,IncX4	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKSO010000005.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323566 SAMN36673206-rid18831213.denovo.005, whole genome shotgun sequence	76102..76539	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKSO010000126.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323566 SAMN36673206-rid18831213.guided.073, whole genome shotgun sequence	2318..2755	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNKSO010000048.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323566 SAMN36673206-rid18831213.denovo.048, whole genome shotgun sequence	34416..35561	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	99.91	1146/1146	ABNKSO010000129.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323566 SAMN36673206-rid18831213.guided.094, whole genome shotgun sequence	4637..5782	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNKSO010000130.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323566 SAMN36673206-rid18831213.guided.095, whole genome shotgun sequence	4637..5782	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	fosA7	97.16	423/423	ABNKSO010000017.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323566 SAMN36673206-rid18831213.denovo.017, whole genome shotgun sequence	18070..18492	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNKSO010000125.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323566 SAMN36673206-rid18831213.guided.072, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																							parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNKSO010000097.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323566 SAMN36673206-rid18831213.denovo.103, whole genome shotgun sequence	186..316	enterobacteriales	IncX4	98.88	712 / 712	ABNKSO010000048.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323566 SAMN36673206-rid18831213.denovo.048, whole genome shotgun sequence	30399..31110		enterobacteriales	IncX4	98.88	712 / 712	ABNKSO010000129.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323566 SAMN36673206-rid18831213.guided.094, whole genome shotgun sequence	620..1331		enterobacteriales	IncX4	98.88	712 / 712	ABNKSO010000130.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323566 SAMN36673206-rid18831213.guided.095, whole genome shotgun sequence	620..1331																																		avrA	ABNKSO010000012.1	95993..96862	99.195	870	0						
GCA_032423025.1_PDT001823729.1_genomic.fna	Salmonella_enterica	0.5219	78.045 KB	19	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aadA1,aadA1,aph(3')-Ia,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKSP010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.denovo.001, whole genome shotgun sequence	375090..375527	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKSP010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.denovo.064, whole genome shotgun sequence	18454..19245	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKSP010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.denovo.064, whole genome shotgun sequence	18454..19245	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNKSP010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.denovo.086, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNKSP010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.denovo.086, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNKSP010000103.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.denovo.114, whole genome shotgun sequence	93..908	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin	X62115	aac(6')-Iaa	97.49	438/438	ABNKSP010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.guided.053, whole genome shotgun sequence	24957..25394	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNKSP010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.guided.095, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNKSP010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.guided.095, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aadA1	99.62	792/792	ABNKSP010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.guided.107, whole genome shotgun sequence	1209..2000	Spectinomycin, Streptomycin	JX185132	aadA1	99.62	792/792	ABNKSP010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.guided.107, whole genome shotgun sequence	1209..2000	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNKSP010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.guided.108, whole genome shotgun sequence	1209..2000	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKSP010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.guided.108, whole genome shotgun sequence	1209..2000	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNKSP010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.guided.113, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin	X62115	floR	98.19	1214/1215	ABNKSP010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.denovo.092, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNKSP010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.guided.091, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNKSP010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.denovo.064, whole genome shotgun sequence	17110..17949	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKSP010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.guided.081, whole genome shotgun sequence	356..1195	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKSP010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.denovo.064, whole genome shotgun sequence	3394..4593	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKSP010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.guided.105, whole genome shotgun sequence	418..1617	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNKSP010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.denovo.088, whole genome shotgun sequence	3121..3594	Trimethoprim	AF393510	dfrA14	100	474/474	ABNKSP010000122.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.guided.102, whole genome shotgun sequence	468..941	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKSP010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323565 SAMN36673205-rid18831203.denovo.058, whole genome shotgun sequence	9109..9668																																																						avrA	ABNKSP010000021.1	39372..40241	99.655	870	0						
GCA_032423045.1_PDT001823728.1_genomic.fna	Salmonella_enterica	0.5212	104.283 KB	13	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKSQ010000010.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323569 SAMN36673207-rid18830943.denovo.10, whole genome shotgun sequence	56689..57126	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKSQ010000090.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12323569 SAMN36673207-rid18830943.guided.63, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032423065.1_PDT001823726.1_genomic.fna	Salmonella_enterica	0.5218	134.976 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKSS010000002.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323564 SAMN36673149-rid18831183.denovo.02, whole genome shotgun sequence	44035..44472	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKSS010000087.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323564 SAMN36673149-rid18831183.guided.58, whole genome shotgun sequence	6049..6486	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKSS010000053.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323564 SAMN36673149-rid18831183.denovo.55, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNKSS010000056.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323564 SAMN36673149-rid18831183.denovo.59, whole genome shotgun sequence	3414..3675																																																avrA	ABNKSS010000005.1	109055..109924	99.54	870	0						
GCA_032423085.1_PDT001823727.1_genomic.fna	Salmonella_enterica	0.521	84.964 KB	17	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKSR010000014.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323590 SAMN36673208-rid18831193.denovo.014, whole genome shotgun sequence	84702..85139	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKSR010000113.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323590 SAMN36673208-rid18831193.guided.064, whole genome shotgun sequence	15405..15842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNKSR010000063.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323590 SAMN36673208-rid18831193.denovo.066, whole genome shotgun sequence	4504..4763	enterobacteriales	IncX1	100	373 / 373	ABNKSR010000087.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323590 SAMN36673208-rid18831193.denovo.090, whole genome shotgun sequence	2153..2525																																																avrA	ABNKSR010000038.1	39484..40353	99.655	870	0						
GCA_032423105.1_PDT001823725.1_genomic.fna	Salmonella_enterica	0.5221	76.203 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKST010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323563 SAMN36673148-rid18831173.denovo.003, whole genome shotgun sequence	32145..32582	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKST010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323563 SAMN36673148-rid18831173.denovo.059, whole genome shotgun sequence	22948..23739	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKST010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323563 SAMN36673148-rid18831173.denovo.059, whole genome shotgun sequence	22948..23739	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNKST010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323563 SAMN36673148-rid18831173.guided.057, whole genome shotgun sequence	24966..25403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKST010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323563 SAMN36673148-rid18831173.guided.086, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKST010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323563 SAMN36673148-rid18831173.guided.086, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNKST010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323563 SAMN36673148-rid18831173.denovo.101, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNKST010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323563 SAMN36673148-rid18831173.guided.102, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNKST010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323563 SAMN36673148-rid18831173.denovo.059, whole genome shotgun sequence	21604..22443	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKST010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323563 SAMN36673148-rid18831173.guided.086, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKST010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323563 SAMN36673148-rid18831173.denovo.059, whole genome shotgun sequence	7888..9087	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKST010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323563 SAMN36673148-rid18831173.guided.114, whole genome shotgun sequence	477..1676	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKST010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323563 SAMN36673148-rid18831173.denovo.087, whole genome shotgun sequence	5351..5910																																																						avrA	ABNKST010000023.1	39430..40299	99.655	870	0						
GCA_032423125.1_PDT001823724.1_genomic.fna	Salmonella_enterica	0.5206	58.959 KB	25	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKSU010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323560 SAMN36673146-rid18831163.denovo.060, whole genome shotgun sequence	12511..12948	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKSU010000110.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323560 SAMN36673146-rid18831163.denovo.112, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKSU010000110.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323560 SAMN36673146-rid18831163.denovo.112, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNKSU010000190.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323560 SAMN36673146-rid18831163.guided.113, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKSU010000190.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323560 SAMN36673146-rid18831163.guided.113, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNKSU010000191.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323560 SAMN36673146-rid18831163.guided.132, whole genome shotgun sequence	1921..2358	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNKSU010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323560 SAMN36673146-rid18831163.denovo.135, whole genome shotgun sequence	2296..3501	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNKSU010000192.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323560 SAMN36673146-rid18831163.guided.139, whole genome shotgun sequence	2310..3515	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNKSU010000125.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323560 SAMN36673146-rid18831163.denovo.128, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNKSU010000110.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323560 SAMN36673146-rid18831163.denovo.112, whole genome shotgun sequence	1831..2092		enterobacteriales	IncFII	96.95	262 / 261	ABNKSU010000190.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323560 SAMN36673146-rid18831163.guided.113, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABNKSU010000128.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323560 SAMN36673146-rid18831163.denovo.131, whole genome shotgun sequence	2732..3104																																		avrA	ABNKSU010000039.1	39484..40353	99.655	870	0						
GCA_032423145.1_PDT001823723.1_genomic.fna	Salmonella_enterica	0.5208	94.02 KB	20	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKSV010000010.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323562 SAMN36673147-rid18831153.denovo.010, whole genome shotgun sequence	52324..52761	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKSV010000118.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323562 SAMN36673147-rid18831153.guided.059, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNKSV010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323562 SAMN36673147-rid18831153.denovo.068, whole genome shotgun sequence	4655..4914	enterobacteriales	IncX1	100	373 / 373	ABNKSV010000090.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323562 SAMN36673147-rid18831153.denovo.093, whole genome shotgun sequence	2732..3104																																																avrA	ABNKSV010000007.1	128621..129490	99.655	870	0						
GCA_032423235.1_PDT001823714.1_genomic.fna	Salmonella_enterica	0.521	239.743 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aadA24,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA24,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,floR,floR,qnrB19,qnrB19,sul2,sul2,sul2,sul2,tet(M),tet(B),tet(M),tet(B),dfrA12,dfrA12	0		3	Col(pHAD28),Col(pHAD28),IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKTA010000001.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.denovo.01, whole genome shotgun sequence	570674..571111	Amikacin, Tobramycin	NC_003197	aadA24	99.36	780/780	ABNKTA010000039.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.denovo.41, whole genome shotgun sequence	4690..5469	Spectinomycin, Streptomycin	DQ677333	aph(6)-Id	100	837/837	ABNKTA010000063.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.denovo.70, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKTA010000063.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.denovo.70, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNKTA010000074.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.guided.27, whole genome shotgun sequence	20573..21010	Amikacin, Tobramycin	NC_003197	aadA24	99.36	780/780	ABNKTA010000076.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.guided.43, whole genome shotgun sequence	4731..5510	Spectinomycin, Streptomycin	DQ677333	aph(6)-Id	100	837/837	ABNKTA010000080.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.guided.69, whole genome shotgun sequence	850..1686	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKTA010000080.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.guided.69, whole genome shotgun sequence	47..850	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNKTA010000062.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.denovo.68, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNKTA010000081.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.guided.71, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.11	1214/1215	ABNKTA010000055.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.denovo.60, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNKTA010000079.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.guided.62, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNKTA010000057.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.denovo.63, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNKTA010000082.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.guided.74, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABNKTA010000083.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.guided.76, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNKTA010000084.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.guided.77, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNKTA010000085.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.guided.78, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNKTA010000086.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.guided.79, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(M)	96.15	1920/1920	ABNKTA010000039.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.denovo.41, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNKTA010000040.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.denovo.42, whole genome shotgun sequence	6921..8126	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNKTA010000076.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.guided.43, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNKTA010000078.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.guided.51, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABNKTA010000039.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.denovo.41, whole genome shotgun sequence	5889..6386	Trimethoprim	AM040708	dfrA12	100	498/498	ABNKTA010000076.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.guided.43, whole genome shotgun sequence	5930..6427	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	100	131 / 131	ABNKTA010000057.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.denovo.63, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	92.5	120 / 131	ABNKTA010000058.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.denovo.64, whole genome shotgun sequence	1958..2077		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNKTA010000037.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.denovo.39, whole genome shotgun sequence	14009..14690		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNKTA010000024.1 Salmonella enterica strain PNUSAS364843 SAMN36672544-rid18831063.denovo.24, whole genome shotgun sequence	55736..56232																																		avrA	ABNKTA010000003.1	77576..78445	99.885	870	0						
GCA_032423505.1_PDT001823696.1_genomic.fna	Salmonella_enterica	0.52	142.834 KB	13	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha)	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKTK010000015.1 Salmonella enterica strain 23TN06CG01N-S SAMN36666046-rid18830913.denovo.15, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKTK010000053.1 Salmonella enterica strain 23TN06CG01N-S SAMN36666046-rid18830913.denovo.56, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNKTK010000053.1 Salmonella enterica strain 23TN06CG01N-S SAMN36666046-rid18830913.denovo.56, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNKTK010000077.1 Salmonella enterica strain 23TN06CG01N-S SAMN36666046-rid18830913.guided.50, whole genome shotgun sequence	14409..14846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKTK010000080.1 Salmonella enterica strain 23TN06CG01N-S SAMN36666046-rid18830913.guided.65, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNKTK010000080.1 Salmonella enterica strain 23TN06CG01N-S SAMN36666046-rid18830913.guided.65, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNKTK010000060.1 Salmonella enterica strain 23TN06CG01N-S SAMN36666046-rid18830913.denovo.63, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNKTK010000081.1 Salmonella enterica strain 23TN06CG01N-S SAMN36666046-rid18830913.guided.69, whole genome shotgun sequence	154..1359	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNKTK010000061.1 Salmonella enterica strain 23TN06CG01N-S SAMN36666046-rid18830913.denovo.64, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNKTK010000053.1 Salmonella enterica strain 23TN06CG01N-S SAMN36666046-rid18830913.denovo.56, whole genome shotgun sequence	5800..6061		enterobacteriales	IncFII	96.95	262 / 261	ABNKTK010000080.1 Salmonella enterica strain 23TN06CG01N-S SAMN36666046-rid18830913.guided.65, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNKTK010000033.1 Salmonella enterica strain 23TN06CG01N-S SAMN36666046-rid18830913.denovo.33, whole genome shotgun sequence	35879..36020																																		avrA	ABNKTK010000018.1	102635..103504	99.655	870	0						
GCA_032423525.1_PDT001823703.1_genomic.fna	Salmonella_enterica	0.5211	155.571 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,floR,floR	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKTJ010000001.1 Salmonella enterica strain 23TN06CH01N-S SAMN36666045-rid18830753.denovo.01, whole genome shotgun sequence	461242..461679	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNKTJ010000053.1 Salmonella enterica strain 23TN06CH01N-S SAMN36666045-rid18830753.denovo.55, whole genome shotgun sequence	1053..2078	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNKTJ010000053.1 Salmonella enterica strain 23TN06CH01N-S SAMN36666045-rid18830753.denovo.55, whole genome shotgun sequence	48..824	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNKTJ010000064.1 Salmonella enterica strain 23TN06CH01N-S SAMN36666045-rid18830753.denovo.70, whole genome shotgun sequence	93..908	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aac(6')-Iaa	97.49	438/438	ABNKTJ010000072.1 Salmonella enterica strain 23TN06CH01N-S SAMN36666045-rid18830753.guided.47, whole genome shotgun sequence	12036..12473	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNKTJ010000075.1 Salmonella enterica strain 23TN06CH01N-S SAMN36666045-rid18830753.guided.63, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNKTJ010000075.1 Salmonella enterica strain 23TN06CH01N-S SAMN36666045-rid18830753.guided.63, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNKTJ010000077.1 Salmonella enterica strain 23TN06CH01N-S SAMN36666045-rid18830753.guided.69, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	floR	98.19	1214/1215	ABNKTJ010000055.1 Salmonella enterica strain 23TN06CH01N-S SAMN36666045-rid18830753.denovo.58, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNKTJ010000074.1 Salmonella enterica strain 23TN06CH01N-S SAMN36666045-rid18830753.guided.57, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKTJ010000039.1 Salmonella enterica strain 23TN06CH01N-S SAMN36666045-rid18830753.denovo.39, whole genome shotgun sequence	9109..9668																																																						avrA	ABNKTJ010000008.1	94085..94954	99.655	870	0						
GCA_032423935.1_PDT001823692.1_genomic.fna	Salmonella_enterica	0.5225	376.532 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKTN010000004.1 Salmonella enterica strain PNUSAS364793 SAMN36666031-rid18830693.denovo.04, whole genome shotgun sequence	68378..68815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKTN010000036.1 Salmonella enterica strain PNUSAS364793 SAMN36666031-rid18830693.guided.29, whole genome shotgun sequence	3185..3622	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKTN010000015.1 Salmonella enterica strain PNUSAS364793 SAMN36666031-rid18830693.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNKTN010000015.1 Salmonella enterica strain PNUSAS364793 SAMN36666031-rid18830693.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNKTN010000001.1	446734..447602	100	869	0						
GCA_032423955.1_PDT001823694.1_genomic.fna	Salmonella_enterica	0.5206	406.448 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKTL010000001.1 Salmonella enterica strain PNUSAS364810 SAMN36666030-rid18830893.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.24	425/438	ABNKTL010000026.1 Salmonella enterica strain PNUSAS364810 SAMN36666030-rid18830893.guided.23, whole genome shotgun sequence	1..425	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKTL010000015.1 Salmonella enterica strain PNUSAS364810 SAMN36666030-rid18830893.denovo.15, whole genome shotgun sequence	40545..41187	enterobacteriales	IncFII(S)	100	262 / 262	ABNKTL010000019.1 Salmonella enterica strain PNUSAS364810 SAMN36666030-rid18830893.denovo.19, whole genome shotgun sequence	3415..3676		enterobacteriales	IncX1	98.93	374 / 374	ABNKTL010000016.1 Salmonella enterica strain PNUSAS364810 SAMN36666030-rid18830893.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNKTL010000002.1	553368..554237	99.54	870	0						
GCA_032423975.1_PDT001823693.1_genomic.fna	Salmonella_enterica	0.5181	301.992 KB	7	aroC_361,dnaN_327,hemD_258,hisD_415,purE_366,sucA_329,thrA_363	2416	60:z10:z39	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(Yp)	aroC	100	100	aroC_361	dnaN	100	100	dnaN_327	hemD	100	100	hemD_258	hisD	100	100	hisD_415	purE	100	100	purE_366	sucA	100	100	sucA_329	thrA	100	100	thrA_363	60	z10	z39	Salmonella enterica subspecies salamae (subspecies II)	II 60:z10:z39	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	91.55	438/438	ABNKTM010000007.1 Salmonella enterica strain PNUSAS364798 SAMN36666037-rid18830703.denovo.07, whole genome shotgun sequence	46151..46588	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	91.55	438/438	ABNKTM010000058.1 Salmonella enterica strain PNUSAS364798 SAMN36666037-rid18830703.guided.47, whole genome shotgun sequence	1564..2001	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	92.64	231 / 230	ABNKTM010000021.1 Salmonella enterica strain PNUSAS364798 SAMN36666037-rid18830703.denovo.21, whole genome shotgun sequence	35611..35839																																																						avrA	ABNKTM010000011.1	142118..142978	92.218	861	0						
GCA_032423995.1_PDT001823690.1_genomic.fna	Salmonella_enterica	0.5225	397.305 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKTP010000004.1 Salmonella enterica strain PNUSAS364803 SAMN36666029-rid18830873.denovo.04, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKTP010000030.1 Salmonella enterica strain PNUSAS364803 SAMN36666029-rid18830873.guided.24, whole genome shotgun sequence	897..1334	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKTP010000002.1	94005..94874	98.966	870	0						
GCA_032424045.1_PDT001823691.1_genomic.fna	Salmonella_enterica	0.521	592.797 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKTO010000001.1 Salmonella enterica strain PNUSAS364813 SAMN36666043-rid18830883.denovo.01, whole genome shotgun sequence	398384..398821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNKTO010000023.1 Salmonella enterica strain PNUSAS364813 SAMN36666043-rid18830883.guided.16, whole genome shotgun sequence	18454..18891	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKTO010000003.1	496398..497266	99.425	870	0						
GCA_032424065.1_PDT001823687.1_genomic.fna	Salmonella_enterica	0.5214	480.975 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKTS010000001.1 Salmonella enterica strain PNUSAS364820 SAMN36666033-rid18830673.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKTS010000017.1 Salmonella enterica strain PNUSAS364820 SAMN36666033-rid18830673.guided.15, whole genome shotgun sequence	7427..7864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKTS010000013.1 Salmonella enterica strain PNUSAS364820 SAMN36666033-rid18830673.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNKTS010000013.1 Salmonella enterica strain PNUSAS364820 SAMN36666033-rid18830673.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNKTS010000002.1	553636..554505	99.54	870	0						
GCA_032424115.1_PDT001823689.1_genomic.fna	Salmonella_enterica	0.5215	273.328 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKTQ010000003.1 Salmonella enterica strain PNUSAS364807 SAMN36666039-rid18830863.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKTQ010000044.1 Salmonella enterica strain PNUSAS364807 SAMN36666039-rid18830863.guided.31, whole genome shotgun sequence	4282..4719	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col156	98.03	152 / 154	ABNKTQ010000033.1 Salmonella enterica strain PNUSAS364807 SAMN36666039-rid18830863.denovo.37, whole genome shotgun sequence	967..1118	enterobacteriales	IncFIB(S)	100	643 / 643	ABNKTQ010000016.1 Salmonella enterica strain PNUSAS364807 SAMN36666039-rid18830863.denovo.16, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	ABNKTQ010000016.1 Salmonella enterica strain PNUSAS364807 SAMN36666039-rid18830863.denovo.16, whole genome shotgun sequence	30407..30668																																									avrA	ABNKTQ010000007.1	95114..95982	100	869	0						
GCA_032424155.1_PDT001823686.1_genomic.fna	Salmonella_enterica	0.5214	489.888 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		3	Col(pHAD28),Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKTT010000001.1 Salmonella enterica strain PNUSAS364800 SAMN36666035-rid18830853.denovo.01, whole genome shotgun sequence	774496..774933	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKTT010000024.1 Salmonella enterica strain PNUSAS364800 SAMN36666035-rid18830853.guided.20, whole genome shotgun sequence	530..967	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNKTT010000016.1 Salmonella enterica strain PNUSAS364800 SAMN36666035-rid18830853.denovo.18, whole genome shotgun sequence	4124..4768	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNKTT010000022.1 Salmonella enterica strain PNUSAS364800 SAMN36666035-rid18830853.guided.17, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNKTT010000016.1 Salmonella enterica strain PNUSAS364800 SAMN36666035-rid18830853.denovo.18, whole genome shotgun sequence	3468..3598	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNKTT010000022.1 Salmonella enterica strain PNUSAS364800 SAMN36666035-rid18830853.guided.17, whole genome shotgun sequence	4362..4492		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKTT010000012.1 Salmonella enterica strain PNUSAS364800 SAMN36666035-rid18830853.denovo.12, whole genome shotgun sequence	40566..41208		enterobacteriales	IncFII(S)	100	262 / 262	ABNKTT010000014.1 Salmonella enterica strain PNUSAS364800 SAMN36666035-rid18830853.denovo.14, whole genome shotgun sequence	3446..3707																																		avrA	ABNKTT010000002.1	553616..554485	99.54	870	0						
GCA_032424175.1_PDT001823685.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKTU010000001.1 Salmonella enterica strain PNUSAS364804 SAMN36666044-rid18830843.denovo.01, whole genome shotgun sequence	493975..494412	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKTU010000024.1 Salmonella enterica strain PNUSAS364804 SAMN36666044-rid18830843.guided.20, whole genome shotgun sequence	2702..3139	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKTU010000014.1 Salmonella enterica strain PNUSAS364804 SAMN36666044-rid18830843.denovo.14, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNKTU010000017.1 Salmonella enterica strain PNUSAS364804 SAMN36666044-rid18830843.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABNKTU010000002.1	553633..554502	99.54	870	0						
GCA_032424215.1_PDT001823688.1_genomic.fna	Salmonella_enterica	0.5213	440.06 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKTR010000001.1 Salmonella enterica strain PNUSAS364821 SAMN36666034-rid18830683.denovo.01, whole genome shotgun sequence	158852..159289	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKTR010000028.1 Salmonella enterica strain PNUSAS364821 SAMN36666034-rid18830683.guided.22, whole genome shotgun sequence	342..779	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKTR010000015.1 Salmonella enterica strain PNUSAS364821 SAMN36666034-rid18830683.denovo.15, whole genome shotgun sequence	36763..37405	enterobacteriales	IncFII(S)	100	262 / 262	ABNKTR010000015.1 Salmonella enterica strain PNUSAS364821 SAMN36666034-rid18830683.denovo.15, whole genome shotgun sequence	42855..43116																																																avrA	ABNKTR010000002.1	553190..554059	99.54	870	0						
GCA_032424235.1_PDT001823684.1_genomic.fna	Salmonella_enterica	0.5222	362.218 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKTV010000001.1 Salmonella enterica strain PNUSAS364818 SAMN36666042-rid18830833.denovo.01, whole genome shotgun sequence	570067..570504	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKTV010000041.1 Salmonella enterica strain PNUSAS364818 SAMN36666042-rid18830833.guided.29, whole genome shotgun sequence	1301..1738	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKTV010000014.1 Salmonella enterica strain PNUSAS364818 SAMN36666042-rid18830833.denovo.14, whole genome shotgun sequence	48451..49093	enterobacteriales	IncFII(S)	100	262 / 262	ABNKTV010000014.1 Salmonella enterica strain PNUSAS364818 SAMN36666042-rid18830833.denovo.14, whole genome shotgun sequence	64178..64439																																																avrA	ABNKTV010000003.1	208646..209515	99.885	870	0						
GCA_032424275.1_PDT001823683.1_genomic.fna	Salmonella_enterica	0.5224	759.073 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	5	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNKTW010000001.1 Salmonella enterica strain PNUSAS364812 SAMN36666027-rid18830663.denovo.01, whole genome shotgun sequence	638994..639431	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNKTW010000031.1 Salmonella enterica strain PNUSAS364812 SAMN36666027-rid18830663.guided.25, whole genome shotgun sequence	2330..2767	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNKTW010000017.1 Salmonella enterica strain PNUSAS364812 SAMN36666027-rid18830663.denovo.18, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNKTW010000028.1 Salmonella enterica strain PNUSAS364812 SAMN36666027-rid18830663.guided.17, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	sul1	100	840/840	ABNKTW010000017.1 Salmonella enterica strain PNUSAS364812 SAMN36666027-rid18830663.denovo.18, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKTW010000028.1 Salmonella enterica strain PNUSAS364812 SAMN36666027-rid18830663.guided.17, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNKTW010000017.1 Salmonella enterica strain PNUSAS364812 SAMN36666027-rid18830663.denovo.18, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNKTW010000028.1 Salmonella enterica strain PNUSAS364812 SAMN36666027-rid18830663.guided.17, whole genome shotgun sequence	9840..11114	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNKTW010000017.1 Salmonella enterica strain PNUSAS364812 SAMN36666027-rid18830663.denovo.18, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNKTW010000028.1 Salmonella enterica strain PNUSAS364812 SAMN36666027-rid18830663.guided.17, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNKTW010000016.1 Salmonella enterica strain PNUSAS364812 SAMN36666027-rid18830663.denovo.16, whole genome shotgun sequence	4434..4684																																																						avrA	ABNKTW010000003.1	553473..554342	99.77	870	0						
GCA_032424315.1_PDT001823682.1_genomic.fna	Salmonella_enterica	0.522	278.317 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,blaTEM-1B,blaTEM-1B,mph(A),mph(A),floR,floR,qnrB19,qnrB19,sul2,sul2,sul2,tet(B),tet(A),tet(A),tet(B),dfrA17,dfrA17	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKTX010000001.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.denovo.01, whole genome shotgun sequence	581151..581588	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKTX010000031.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.denovo.31, whole genome shotgun sequence	3925..4761	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKTX010000031.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.denovo.31, whole genome shotgun sequence	3122..3925	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNKTX010000056.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.guided.37, whole genome shotgun sequence	3762..4199	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	804/804	ABNKTX010000061.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.guided.53, whole genome shotgun sequence	901..1704	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNKTX010000062.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.guided.54, whole genome shotgun sequence	901..1704	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNKTX010000064.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.guided.57, whole genome shotgun sequence	519..1355	Streptomycin	M28829	blaTEM-1B	100	861/861	ABNKTX010000048.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.denovo.60, whole genome shotgun sequence	128..988	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNKTX010000065.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.guided.59, whole genome shotgun sequence	246..1106	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNKTX010000039.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.denovo.42, whole genome shotgun sequence	3276..4181	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	ABNKTX010000058.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.guided.45, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNKTX010000031.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.denovo.31, whole genome shotgun sequence	7897..9110	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNKTX010000057.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.guided.44, whole genome shotgun sequence	2237..3450	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNKTX010000043.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.denovo.49, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNKTX010000059.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.guided.48, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABNKTX010000031.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.denovo.31, whole genome shotgun sequence	2246..3061	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNKTX010000061.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.guided.53, whole genome shotgun sequence	25..840	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNKTX010000062.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.guided.54, whole genome shotgun sequence	25..840	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNKTX010000030.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.denovo.30, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	99.92	1275/1275	ABNKTX010000031.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.denovo.31, whole genome shotgun sequence	6022..7296	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1275/1275	ABNKTX010000060.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.guided.50, whole genome shotgun sequence	1195..2469	Doxycycline, Tetracycline	AF534183	tet(B)	100	1206/1206	ABNKTX010000063.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.guided.56, whole genome shotgun sequence	113..1318	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA17	100	474/474	ABNKTX010000044.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.denovo.51, whole genome shotgun sequence	77..550	Trimethoprim	FJ460238	dfrA17	100	474/474	ABNKTX010000066.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.guided.63, whole genome shotgun sequence	84..557	Trimethoprim	FJ460238																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	100	131 / 131	ABNKTX010000043.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.denovo.49, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNKTX010000059.1 Salmonella enterica strain PNUSAS364796 SAMN36666038-rid18830653.guided.48, whole genome shotgun sequence	2044..2174																																																avrA	ABNKTX010000002.1	516598..517467	99.885	870	0						
GCA_032424355.1_PDT001823681.1_genomic.fna	Salmonella_enterica	0.5228	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKTY010000001.1 Salmonella enterica strain PNUSAS364805 SAMN36666032-rid18830823.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKTY010000035.1 Salmonella enterica strain PNUSAS364805 SAMN36666032-rid18830823.guided.25, whole genome shotgun sequence	2506..2943	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNKTY010000013.1 Salmonella enterica strain PNUSAS364805 SAMN36666032-rid18830823.denovo.13, whole genome shotgun sequence	68898..69039																																																						avrA	ABNKTY010000003.1	39561..40430	99.655	870	0						
GCA_032424375.1_PDT001823680.1_genomic.fna	Salmonella_enterica	0.5206	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKUA010000001.1 Salmonella enterica strain PNUSAS364819 SAMN36666036-rid18830813.denovo.01, whole genome shotgun sequence	774378..774815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKUA010000024.1 Salmonella enterica strain PNUSAS364819 SAMN36666036-rid18830813.guided.18, whole genome shotgun sequence	529..966	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKUA010000012.1 Salmonella enterica strain PNUSAS364819 SAMN36666036-rid18830813.denovo.12, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNKUA010000012.1 Salmonella enterica strain PNUSAS364819 SAMN36666036-rid18830813.denovo.12, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNKUA010000014.1 Salmonella enterica strain PNUSAS364819 SAMN36666036-rid18830813.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNKUA010000002.1	553696..554565	99.54	870	0						
GCA_032424415.1_PDT001823679.1_genomic.fna	Salmonella_enterica	0.5218	460.647 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKTZ010000001.1 Salmonella enterica strain PNUSAS364809 SAMN36666041-rid18830643.denovo.01, whole genome shotgun sequence	622355..622792	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKTZ010000030.1 Salmonella enterica strain PNUSAS364809 SAMN36666041-rid18830643.guided.22, whole genome shotgun sequence	2657..3094	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKTZ010000003.1	150300..151169	99.655	870	0						
GCA_032424435.1_PDT001823677.1_genomic.fna	Salmonella_enterica	0.5227	398.251 KB	4	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKUB010000003.1 Salmonella enterica strain PNUSAS364806 SAMN36666025-rid18830623.denovo.03, whole genome shotgun sequence	493839..494276	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKUB010000031.1 Salmonella enterica strain PNUSAS364806 SAMN36666025-rid18830623.guided.24, whole genome shotgun sequence	6950..7387	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032424455.1_PDT001823676.1_genomic.fna	Salmonella_enterica	0.5229	513.92 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNKUC010000001.1 Salmonella enterica strain PNUSAS364811 SAMN36666028-rid18830803.denovo.01, whole genome shotgun sequence	666959..667396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNKUC010000028.1 Salmonella enterica strain PNUSAS364811 SAMN36666028-rid18830803.guided.23, whole genome shotgun sequence	81..518	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKUC010000003.1	510006..510875	99.31	870	0						
GCA_032424475.1_PDT001823675.1_genomic.fna	Salmonella_enterica	0.5215	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKUD010000004.1 Salmonella enterica strain PNUSAS364815 SAMN36666024-rid18830793.denovo.04, whole genome shotgun sequence	37883..38320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKUD010000042.1 Salmonella enterica strain PNUSAS364815 SAMN36666024-rid18830793.guided.29, whole genome shotgun sequence	2016..2453	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKUD010000015.1 Salmonella enterica strain PNUSAS364815 SAMN36666024-rid18830793.denovo.15, whole genome shotgun sequence	44743..45385	enterobacteriales	IncFII(S)	100	262 / 262	ABNKUD010000015.1 Salmonella enterica strain PNUSAS364815 SAMN36666024-rid18830793.denovo.15, whole genome shotgun sequence	29397..29658		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNKUD010000016.1 Salmonella enterica strain PNUSAS364815 SAMN36666024-rid18830793.denovo.16, whole genome shotgun sequence	75386..75527																																									avrA	ABNKUD010000001.1	451833..452701	100	869	0						
GCA_032424495.1_PDT001823674.1_genomic.fna	Salmonella_enterica	0.5204	645.558 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	-	Salmonella enterica subspecies enterica (subspecies I)	I 9:l,z28:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKUE010000001.1 Salmonella enterica strain PNUSAS364817 SAMN36666022-rid18830783.denovo.01, whole genome shotgun sequence	400163..400600	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.94	425/438	ABNKUE010000034.1 Salmonella enterica strain PNUSAS364817 SAMN36666022-rid18830783.guided.35, whole genome shotgun sequence	38..462	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKUE010000003.1	497840..498708	99.425	870	0						
GCA_032424525.1_PDT001823672.1_genomic.fna	Salmonella_enterica	0.5214	489.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKUG010000001.1 Salmonella enterica strain PNUSAS364816 SAMN36666023-rid18830603.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKUG010000023.1 Salmonella enterica strain PNUSAS364816 SAMN36666023-rid18830603.guided.18, whole genome shotgun sequence	4719..5156	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKUG010000012.1 Salmonella enterica strain PNUSAS364816 SAMN36666023-rid18830603.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNKUG010000015.1 Salmonella enterica strain PNUSAS364816 SAMN36666023-rid18830603.denovo.17, whole genome shotgun sequence	3414..3675																																																avrA	ABNKUG010000002.1	553636..554505	99.54	870	0						
GCA_032424555.1_PDT001823673.1_genomic.fna	Salmonella_enterica	0.5216	453.939 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKUF010000001.1 Salmonella enterica strain PNUSAS364814 SAMN36666026-rid18830613.denovo.01, whole genome shotgun sequence	477308..477745	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKUF010000025.1 Salmonella enterica strain PNUSAS364814 SAMN36666026-rid18830613.guided.21, whole genome shotgun sequence	734..1171	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKUF010000010.1	172978..173846	99.195	870	0						
GCA_032424575.1_PDT001823670.1_genomic.fna	Salmonella_enterica	0.5235	526.334 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKUI010000001.1 Salmonella enterica strain PNUSAS364801 SAMN36666013-rid18830773.denovo.01, whole genome shotgun sequence	573972..574409	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKUI010000028.1 Salmonella enterica strain PNUSAS364801 SAMN36666013-rid18830773.guided.21, whole genome shotgun sequence	5368..5805	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKUI010000003.1	149913..150782	99.655	870	0						
GCA_032424595.1_PDT001823669.1_genomic.fna	Salmonella_enterica	0.5213	518.578 KB	4	aroC_115,dnaN_75,hemD_8,hisD_115,purE_2,sucA_116,thrA_110	314	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_115	dnaN	100	100	dnaN_75	hemD	100	100	hemD_8	hisD	100	100	hisD_115	purE	100	100	purE_2	sucA	100	100	sucA_116	thrA	100	100	thrA_110	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNKUJ010000001.1 Salmonella enterica strain PNUSAS364808 SAMN36666015-rid18830583.denovo.01, whole genome shotgun sequence	160558..160995	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNKUJ010000024.1 Salmonella enterica strain PNUSAS364808 SAMN36666015-rid18830583.guided.19, whole genome shotgun sequence	2669..3106	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKUJ010000002.1	107874..108743	98.851	870	0						
GCA_032424615.1_PDT001823671.1_genomic.fna	Salmonella_enterica	0.523	470.505 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKUH010000001.1 Salmonella enterica strain PNUSAS364802 SAMN36666014-rid18830593.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKUH010000030.1 Salmonella enterica strain PNUSAS364802 SAMN36666014-rid18830593.guided.23, whole genome shotgun sequence	3367..3804	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKUH010000003.1	94091..94960	99.655	870	0						
GCA_032424635.1_PDT001823667.1_genomic.fna	Salmonella_enterica	0.5201	480.957 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKUL010000001.1 Salmonella enterica strain PNUSAS364797 SAMN36666016-rid18830563.denovo.01, whole genome shotgun sequence	293348..293785	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKUL010000023.1 Salmonella enterica strain PNUSAS364797 SAMN36666016-rid18830563.guided.17, whole genome shotgun sequence	7571..8008	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKUL010000014.1 Salmonella enterica strain PNUSAS364797 SAMN36666016-rid18830563.denovo.14, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNKUL010000017.1 Salmonella enterica strain PNUSAS364797 SAMN36666016-rid18830563.denovo.18, whole genome shotgun sequence	3404..3665		enterobacteriales	IncI2(Delta)	98.42	316 / 316	ABNKUL010000013.1 Salmonella enterica strain PNUSAS364797 SAMN36666016-rid18830563.denovo.13, whole genome shotgun sequence	58429..58744																																									avrA	ABNKUL010000002.1	553642..554511	99.54	870	0						
GCA_032424675.1_PDT001823663.1_genomic.fna	Salmonella_enterica	0.5226	60.16 KB	25	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCFT010000022.1 TPA_asm: Salmonella enterica isolate 2306S61466 SAMN36665450-rid18830543.denovo.022, whole genome shotgun sequence	16059..16496	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCFT010000157.1 TPA_asm: Salmonella enterica isolate 2306S61466 SAMN36665450-rid18830543.guided.029, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	90.84	131 / 131	DAQCFT010000110.1 TPA_asm: Salmonella enterica isolate 2306S61466 SAMN36665450-rid18830543.denovo.113, whole genome shotgun sequence	3852..3982	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCFT010000076.1 TPA_asm: Salmonella enterica isolate 2306S61466 SAMN36665450-rid18830543.denovo.078, whole genome shotgun sequence	9061..9703		enterobacteriales	IncFII(S)	100	262 / 262	DAQCFT010000102.1 TPA_asm: Salmonella enterica isolate 2306S61466 SAMN36665450-rid18830543.denovo.105, whole genome shotgun sequence	3404..3665																																									avrA	DAQCFT010000038.1	43682..44551	99.54	870	0						
GCA_032424695.1_PDT001823662.1_genomic.fna	Salmonella_enterica	0.5244	25.779 KB	55	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	-:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	-	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQCFU010000083.1 TPA_asm: Salmonella enterica isolate 2306M38204 SAMN36665451-rid18830533.denovo.083, whole genome shotgun sequence	14799..15236	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQCFU010000131.1 TPA_asm: Salmonella enterica isolate 2306M38204 SAMN36665451-rid18830533.denovo.134, whole genome shotgun sequence	5485..6315	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQCFU010000131.1 TPA_asm: Salmonella enterica isolate 2306M38204 SAMN36665451-rid18830533.denovo.134, whole genome shotgun sequence	6321..7124	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	DAQCFU010000347.1 TPA_asm: Salmonella enterica isolate 2306M38204 SAMN36665451-rid18830533.guided.087, whole genome shotgun sequence	14472..14909	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQCFU010000350.1 TPA_asm: Salmonella enterica isolate 2306M38204 SAMN36665451-rid18830533.guided.186, whole genome shotgun sequence	5239..6069	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQCFU010000350.1 TPA_asm: Salmonella enterica isolate 2306M38204 SAMN36665451-rid18830533.guided.186, whole genome shotgun sequence	4430..5233	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQCFU010000131.1 TPA_asm: Salmonella enterica isolate 2306M38204 SAMN36665451-rid18830533.denovo.134, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQCFU010000351.1 TPA_asm: Salmonella enterica isolate 2306M38204 SAMN36665451-rid18830533.guided.207, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	DAQCFU010000131.1 TPA_asm: Salmonella enterica isolate 2306M38204 SAMN36665451-rid18830533.denovo.134, whole genome shotgun sequence	7185..8000	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQCFU010000350.1 TPA_asm: Salmonella enterica isolate 2306M38204 SAMN36665451-rid18830533.guided.186, whole genome shotgun sequence	3554..4369	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCFU010000142.1 TPA_asm: Salmonella enterica isolate 2306M38204 SAMN36665451-rid18830533.denovo.145, whole genome shotgun sequence	9130..9772	enterobacteriales	IncFII(S)	100	262 / 262	DAQCFU010000170.1 TPA_asm: Salmonella enterica isolate 2306M38204 SAMN36665451-rid18830533.denovo.173, whole genome shotgun sequence	3407..3668		enterobacteriales	IncX1	95.76	377 / 377	DAQCFU010000283.1 TPA_asm: Salmonella enterica isolate 2306M38204 SAMN36665451-rid18830533.denovo.288, whole genome shotgun sequence	711..1087																																									avrA	DAQCFU010000018.1	43697..44566	99.54	870	0						
GCA_032424715.1_PDT001823668.1_genomic.fna	Salmonella_enterica	0.5219	389.172 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKUK010000001.1 Salmonella enterica strain PNUSAS364795 SAMN36666017-rid18830573.denovo.01, whole genome shotgun sequence	498140..498577	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKUK010000022.1 Salmonella enterica strain PNUSAS364795 SAMN36666017-rid18830573.guided.21, whole genome shotgun sequence	13..450	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKUK010000008.1	140447..141316	99.425	870	0						
GCA_032424735.1_PDT001823661.1_genomic.fna	Salmonella_enterica	0.5225	49.608 KB	28	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	-:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	-	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCFV010000075.1 TPA_asm: Salmonella enterica isolate 2305W35129 SAMN36665452-rid18830523.denovo.075, whole genome shotgun sequence	5009..5446	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCFV010000177.1 TPA_asm: Salmonella enterica isolate 2305W35129 SAMN36665452-rid18830523.guided.077, whole genome shotgun sequence	14685..15122	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	90.84	131 / 131	DAQCFV010000124.1 TPA_asm: Salmonella enterica isolate 2305W35129 SAMN36665452-rid18830523.denovo.127, whole genome shotgun sequence	3852..3982	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCFV010000022.1 TPA_asm: Salmonella enterica isolate 2305W35129 SAMN36665452-rid18830523.denovo.022, whole genome shotgun sequence	48331..48973		enterobacteriales	IncFII(S)	100	262 / 262	DAQCFV010000022.1 TPA_asm: Salmonella enterica isolate 2305W35129 SAMN36665452-rid18830523.denovo.022, whole genome shotgun sequence	4078..4339																																									avrA	DAQCFV010000036.1	43598..44467	99.54	870	0						
GCA_032424915.1_PDT001823645.1_genomic.fna	Salmonella_enterica	0.5228	443.623 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKUW010000001.1 Salmonella enterica strain PNUSAS364347 SAMN36659864-rid18830263.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKUW010000024.1 Salmonella enterica strain PNUSAS364347 SAMN36659864-rid18830263.guided.15, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKUW010000002.1	146984..147853	98.966	870	0						
GCA_032424935.1_PDT001823640.1_genomic.fna	Salmonella_enterica	0.5222	187.326 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKUZ010000001.1 Salmonella enterica strain PNUSAS364671 SAMN36660392-rid18830363.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKUZ010000041.1 Salmonella enterica strain PNUSAS364671 SAMN36660392-rid18830363.guided.34, whole genome shotgun sequence	2884..3321	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKUZ010000026.1 Salmonella enterica strain PNUSAS364671 SAMN36660392-rid18830363.denovo.26, whole genome shotgun sequence	44728..45370	enterobacteriales	IncFII(S)	100	262 / 262	ABNKUZ010000026.1 Salmonella enterica strain PNUSAS364671 SAMN36660392-rid18830363.denovo.26, whole genome shotgun sequence	29382..29643																																																avrA	ABNKUZ010000002.1	143228..144096	100	869	0						
GCA_032424955.1_PDT001823639.1_genomic.fna	Salmonella_enterica	0.5196	695.93 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKVA010000001.1 Salmonella enterica strain PNUSAS364697 SAMN36660585-rid18830223.denovo.01, whole genome shotgun sequence	642513..642950	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKVA010000023.1 Salmonella enterica strain PNUSAS364697 SAMN36660585-rid18830223.guided.12, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	97.91	191 / 193	ABNKVA010000015.1 Salmonella enterica strain PNUSAS364697 SAMN36660585-rid18830223.denovo.18, whole genome shotgun sequence	1534..1724																																																																	
GCA_032424975.1_PDT001823637.1_genomic.fna	Salmonella_enterica	0.5214	225.555 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKVC010000001.1 Salmonella enterica strain PNUSAS364698 SAMN36660577-rid18830353.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKVC010000052.1 Salmonella enterica strain PNUSAS364698 SAMN36660577-rid18830353.guided.35, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKVC010000026.1 Salmonella enterica strain PNUSAS364698 SAMN36660577-rid18830353.denovo.26, whole genome shotgun sequence	44724..45366	enterobacteriales	IncFII(S)	100	262 / 262	ABNKVC010000026.1 Salmonella enterica strain PNUSAS364698 SAMN36660577-rid18830353.denovo.26, whole genome shotgun sequence	29378..29639																																																avrA	ABNKVC010000002.1	209222..210090	100	869	0						
GCA_032424995.1_PDT001823636.1_genomic.fna	Salmonella_enterica	0.5206	376.58 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKVD010000001.1 Salmonella enterica strain PNUSAS364707 SAMN36660580-rid18830203.denovo.01, whole genome shotgun sequence	774378..774815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKVD010000030.1 Salmonella enterica strain PNUSAS364707 SAMN36660580-rid18830203.guided.23, whole genome shotgun sequence	2684..3121	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKVD010000022.1 Salmonella enterica strain PNUSAS364707 SAMN36660580-rid18830203.denovo.22, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNKVD010000023.1 Salmonella enterica strain PNUSAS364707 SAMN36660580-rid18830203.denovo.24, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.93	374 / 374	ABNKVD010000017.1 Salmonella enterica strain PNUSAS364707 SAMN36660580-rid18830203.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABNKVD010000002.1	553682..554551	99.54	870	0						
GCA_032425055.1_PDT001823646.1_genomic.fna	Salmonella_enterica	0.521	518.832 KB	3	aroC_115,dnaN_75,hemD_8,hisD_115,purE_2,sucA_116,thrA_110	314	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_115	dnaN	100	100	dnaN_75	hemD	100	100	hemD_8	hisD	100	100	hisD_115	purE	100	100	purE_2	sucA	100	100	sucA_116	thrA	100	100	thrA_110	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNKUV010000001.1 Salmonella enterica strain PNUSAS364345 SAMN36659861-rid18830273.denovo.01, whole genome shotgun sequence	159068..159505	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNKUV010000023.1 Salmonella enterica strain PNUSAS364345 SAMN36659861-rid18830273.guided.17, whole genome shotgun sequence	9800..10237	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKUV010000002.1	145364..146233	98.851	870	0						
GCA_032425095.1_PDT001823631.1_genomic.fna	Salmonella_enterica	0.5207	223.987 KB	8	aroC_46,dnaN_588,hemD_3*,hisD_800,purE_517,sucA_2,thrA_1	3868*	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_588	hemD	99.7685185185185	100	hemD_3*	hisD	100	100	hisD_800	purE	100	100	purE_517	sucA	100	100	sucA_2	thrA	100	100	thrA_1	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKVG010000004.1 Salmonella enterica strain PNUSAS364648 SAMN36661011-rid18830173.denovo.04, whole genome shotgun sequence	299068..299505	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKVG010000039.1 Salmonella enterica strain PNUSAS364648 SAMN36661011-rid18830173.guided.32, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197	fosA7	92.91	423/423	ABNKVG010000001.1 Salmonella enterica strain PNUSAS364648 SAMN36661011-rid18830173.denovo.01, whole genome shotgun sequence	284890..285312	Fosfomycin	LAPJ01000014	fosA7	92.91	423/423	ABNKVG010000042.1 Salmonella enterica strain PNUSAS364648 SAMN36661011-rid18830173.guided.37, whole genome shotgun sequence	2116..2538	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKVG010000003.1	94303..95174	99.541	872	0						
GCA_032425135.1_PDT001823627.1_genomic.fna	Salmonella_enterica	0.5214	257.622 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,catA1,catA1,sul1,sul2,sul1,sul2,tet(A),tet(A),dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKVI010000003.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.denovo.03, whole genome shotgun sequence	75347..75784	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	837/837	ABNKVI010000038.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.denovo.42, whole genome shotgun sequence	8849..9685	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKVI010000038.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.denovo.42, whole genome shotgun sequence	9685..10488	Streptomycin	AF321551	aadA1	100	792/792	ABNKVI010000038.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.denovo.42, whole genome shotgun sequence	6245..7036	Spectinomycin, Streptomycin	JX185132	aac(6')-Iaa	96.35	438/438	ABNKVI010000053.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.guided.28, whole genome shotgun sequence	24516..24953	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	837/837	ABNKVI010000055.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.guided.41, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKVI010000055.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.guided.41, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aadA1	100	792/792	ABNKVI010000055.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.guided.41, whole genome shotgun sequence	6229..7020	Spectinomycin, Streptomycin	JX185132	catA1	99.85	660/660	ABNKVI010000029.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.denovo.31, whole genome shotgun sequence	20841..21500	Chloramphenicol	V00622	catA1	99.85	660/660	ABNKVI010000057.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.guided.49, whole genome shotgun sequence	1101..1760	Chloramphenicol	V00622	sul1	100	840/840	ABNKVI010000038.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.denovo.42, whole genome shotgun sequence	4901..5740	Sulfamethoxazole	U12338	sul2	100	816/816	ABNKVI010000038.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.denovo.42, whole genome shotgun sequence	10549..11364	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABNKVI010000055.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.guided.41, whole genome shotgun sequence	7525..8364	Sulfamethoxazole	U12338	sul2	100	816/816	ABNKVI010000055.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.guided.41, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	tet(A)	100	1200/1200	ABNKVI010000029.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.denovo.31, whole genome shotgun sequence	15905..17104	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKVI010000056.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.guided.45, whole genome shotgun sequence	2878..4077	Doxycycline, Tetracycline	AJ517790	dfrA1	99.79	474/474	ABNKVI010000038.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.denovo.42, whole genome shotgun sequence	7129..7602	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNKVI010000038.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.denovo.42, whole genome shotgun sequence	7129..7602	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNKVI010000038.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.denovo.42, whole genome shotgun sequence	7129..7602	Trimethoprim	X00926	dfrA1	99.79	474/474	ABNKVI010000055.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.guided.41, whole genome shotgun sequence	5663..6136	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNKVI010000055.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.guided.41, whole genome shotgun sequence	5663..6136	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNKVI010000055.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.guided.41, whole genome shotgun sequence	5663..6136	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																														gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKVI010000034.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.denovo.37, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNKVI010000040.1 Salmonella enterica strain PNUSAS364695 SAMN36660574-rid18830313.denovo.44, whole genome shotgun sequence	3393..3654																																																avrA	ABNKVI010000010.1	140720..141589	99.54	870	0						
GCA_032425155.1_PDT001823629.1_genomic.fna	Salmonella_enterica	0.5213	558.057 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNKVH010000001.1 Salmonella enterica strain PNUSAS364703 SAMN36660583-rid18830163.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNKVH010000029.1 Salmonella enterica strain PNUSAS364703 SAMN36660583-rid18830163.guided.15, whole genome shotgun sequence	16407..16844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKVH010000002.1	94222..95091	98.966	870	0						
GCA_032425175.1_PDT001823638.1_genomic.fna	Salmonella_enterica	0.5216	191.426 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKVB010000001.1 Salmonella enterica strain PNUSAS364736 SAMN36660901-rid18830213.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKVB010000060.1 Salmonella enterica strain PNUSAS364736 SAMN36660901-rid18830213.guided.39, whole genome shotgun sequence	1668..2105	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKVB010000006.1	39872..40740	99.77	870	0						
GCA_032425235.1_PDT001823623.1_genomic.fna	Salmonella_enterica	0.5197	231.528 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	5	aac(6')-Iaa,aadA7,aac(6')-Iaa,aadA7,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	2	Col(pHAD28),Col440I	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKVL010000001.1 Salmonella enterica strain PNUSAS364665 SAMN36660387-rid18830123.denovo.01, whole genome shotgun sequence	486095..486532	Amikacin, Tobramycin	NC_003197	aadA7	99	798/798	ABNKVL010000015.1 Salmonella enterica strain PNUSAS364665 SAMN36660387-rid18830123.denovo.15, whole genome shotgun sequence	55419..56216	Spectinomycin, Streptomycin	AF224733	aac(6')-Iaa	97.95	438/438	ABNKVL010000042.1 Salmonella enterica strain PNUSAS364665 SAMN36660387-rid18830123.guided.31, whole genome shotgun sequence	5645..6082	Amikacin, Tobramycin	NC_003197	aadA7	99	798/798	ABNKVL010000043.1 Salmonella enterica strain PNUSAS364665 SAMN36660387-rid18830123.guided.32, whole genome shotgun sequence	8885..9682	Spectinomycin, Streptomycin	AF224733	fosA7	97.16	423/423	ABNKVL010000009.1 Salmonella enterica strain PNUSAS364665 SAMN36660387-rid18830123.denovo.09, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNKVL010000046.1 Salmonella enterica strain PNUSAS364665 SAMN36660387-rid18830123.guided.37, whole genome shotgun sequence	1880..2302	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNKVL010000015.1 Salmonella enterica strain PNUSAS364665 SAMN36660387-rid18830123.denovo.15, whole genome shotgun sequence	56721..57560	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKVL010000043.1 Salmonella enterica strain PNUSAS364665 SAMN36660387-rid18830123.guided.32, whole genome shotgun sequence	10187..11026	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKVL010000030.1 Salmonella enterica strain PNUSAS364665 SAMN36660387-rid18830123.denovo.35, whole genome shotgun sequence	3890..5089	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKVL010000045.1 Salmonella enterica strain PNUSAS364665 SAMN36660387-rid18830123.guided.34, whole genome shotgun sequence	3931..5130	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNKVL010000035.1 Salmonella enterica strain PNUSAS364665 SAMN36660387-rid18830123.denovo.41, whole genome shotgun sequence	1708..1838	enterobacteriales	Col440I	93.64	110 / 114	ABNKVL010000031.1 Salmonella enterica strain PNUSAS364665 SAMN36660387-rid18830123.denovo.36, whole genome shotgun sequence	1189..1298																																																avrA	ABNKVL010000012.1	67021..67890	99.195	870	0						
GCA_032425275.1_PDT001823621.1_genomic.fna	Salmonella_enterica	0.5216	447.894 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKVN010000001.1 Salmonella enterica strain PNUSAS364692 SAMN36660588-rid18830113.denovo.01, whole genome shotgun sequence	789056..789493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKVN010000026.1 Salmonella enterica strain PNUSAS364692 SAMN36660588-rid18830113.guided.18, whole genome shotgun sequence	12055..12492	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKVN010000002.1	136017..136886	99.195	870	0						
GCA_032425295.1_PDT001823619.1_genomic.fna	Salmonella_enterica	0.5207	363.669 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKVO010000001.1 Salmonella enterica strain PNUSAS364733 SAMN36660904-rid18830103.denovo.01, whole genome shotgun sequence	477368..477805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKVO010000033.1 Salmonella enterica strain PNUSAS364733 SAMN36660904-rid18830103.guided.26, whole genome shotgun sequence	1953..2390	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKVO010000010.1	139937..140805	99.195	870	0						
GCA_032425315.1_PDT001823618.1_genomic.fna	Salmonella_enterica	0.5215	406.982 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKVP010000001.1 Salmonella enterica strain PNUSAS364750 SAMN36661185-rid18830093.denovo.01, whole genome shotgun sequence	293052..293489	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKVP010000027.1 Salmonella enterica strain PNUSAS364750 SAMN36661185-rid18830093.guided.22, whole genome shotgun sequence	11048..11485	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKVP010000019.1 Salmonella enterica strain PNUSAS364750 SAMN36661185-rid18830093.denovo.21, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNKVP010000016.1 Salmonella enterica strain PNUSAS364750 SAMN36661185-rid18830093.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNKVP010000002.1	553076..553945	99.54	870	0						
GCA_032425335.1_PDT001823616.1_genomic.fna	Salmonella_enterica	0.5203	400.254 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKVR010000001.1 Salmonella enterica strain PNUSAS364751 SAMN36661188-rid18830073.denovo.01, whole genome shotgun sequence	671549..671986	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKVR010000024.1 Salmonella enterica strain PNUSAS364751 SAMN36661188-rid18830073.guided.13, whole genome shotgun sequence	28401..28838	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKVR010000003.1	512235..513104	99.425	870	0						
GCA_032425355.1_PDT001823615.1_genomic.fna	Salmonella_enterica	0.5177	420.9 KB	5	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	8	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,floR,floR,qnrB19,qnrB19,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),ColpVC,IncFIB(pN55391),IncX1	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKVT010000002.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.denovo.02, whole genome shotgun sequence	469459..469896	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNKVT010000015.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.denovo.15, whole genome shotgun sequence	1396..2187	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKVT010000015.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.denovo.15, whole genome shotgun sequence	1396..2187	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNKVT010000039.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.guided.20, whole genome shotgun sequence	1434..2225	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNKVT010000039.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.guided.20, whole genome shotgun sequence	1434..2225	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	99.77	438/438	ABNKVT010000040.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.guided.22, whole genome shotgun sequence	44283..44720	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNKVT010000022.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.denovo.24, whole genome shotgun sequence	991..1851	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNKVT010000046.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.guided.41, whole genome shotgun sequence	1032..1892	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNKVT010000029.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.denovo.33, whole genome shotgun sequence	385..1598	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNKVT010000043.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.guided.36, whole genome shotgun sequence	2606..3819	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNKVT010000032.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.denovo.38, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNKVT010000044.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.guided.37, whole genome shotgun sequence	920..1564	Ciprofloxacin	EU432277	sul1	100	840/840	ABNKVT010000015.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.denovo.15, whole genome shotgun sequence	2692..3531	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKVT010000039.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.guided.20, whole genome shotgun sequence	2730..3569	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNKVT010000015.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.denovo.15, whole genome shotgun sequence	16048..17247	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKVT010000039.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.guided.20, whole genome shotgun sequence	16086..17285	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNKVT010000030.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.denovo.34, whole genome shotgun sequence	1767..2240	Trimethoprim	AF393510	dfrA14	100	474/474	ABNKVT010000045.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.guided.39, whole genome shotgun sequence	467..940	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNKVT010000032.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.denovo.38, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNKVT010000044.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.guided.37, whole genome shotgun sequence	264..394		enterobacteriales	ColpVC	99.48	193 / 193	ABNKVT010000034.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.denovo.42, whole genome shotgun sequence	192..384		enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNKVT010000026.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.denovo.29, whole genome shotgun sequence	9109..9668		enterobacteriales	IncX1	98.66	374 / 374	ABNKVT010000022.1 Salmonella enterica strain PNUSAS364752 SAMN36661187-rid18830063.denovo.24, whole genome shotgun sequence	7617..7990																											avrA	ABNKVT010000001.1	437204..438073	99.425	870	0						
GCA_032425365.1_PDT001823614.1_genomic.fna	Salmonella_enterica	0.5215	490.976 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKVS010000001.1 Salmonella enterica strain PNUSAS364646 SAMN36661009-rid18830053.denovo.01, whole genome shotgun sequence	422062..422499	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNKVS010000027.1 Salmonella enterica strain PNUSAS364646 SAMN36661009-rid18830053.guided.17, whole genome shotgun sequence	2256..2693	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKVS010000003.1	95200..96068	99.425	870	0						
GCA_032425395.1_PDT001823617.1_genomic.fna	Salmonella_enterica	0.5209	390.838 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKVQ010000001.1 Salmonella enterica strain PNUSAS364753 SAMN36661186-rid18830083.denovo.01, whole genome shotgun sequence	571694..572131	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKVQ010000031.1 Salmonella enterica strain PNUSAS364753 SAMN36661186-rid18830083.guided.19, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKVQ010000012.1	93870..94738	99.195	870	0						
GCA_032425415.1_PDT001823612.1_genomic.fna	Salmonella_enterica	0.5212	696.511 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKVU010000001.1 Salmonella enterica strain PNUSAS364667 SAMN36660393-rid18830033.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKVU010000027.1 Salmonella enterica strain PNUSAS364667 SAMN36660393-rid18830033.guided.22, whole genome shotgun sequence	4541..4978	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKVU010000020.1 Salmonella enterica strain PNUSAS364667 SAMN36660393-rid18830033.denovo.21, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNKVU010000017.1 Salmonella enterica strain PNUSAS364667 SAMN36660393-rid18830033.denovo.17, whole genome shotgun sequence	3992..4253																																																avrA	ABNKVU010000002.1	585348..586217	99.54	870	0						
GCA_032425435.1_PDT001823611.1_genomic.fna	Salmonella_enterica	0.5218	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		2	IncFIB(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKVV010000002.1 Salmonella enterica strain PNUSAS364670 SAMN36660388-rid18830023.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKVV010000061.1 Salmonella enterica strain PNUSAS364670 SAMN36660388-rid18830023.guided.31, whole genome shotgun sequence	13416..13853	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNKVV010000018.1 Salmonella enterica strain PNUSAS364670 SAMN36660388-rid18830023.denovo.18, whole genome shotgun sequence	25340..26539	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKVV010000063.1 Salmonella enterica strain PNUSAS364670 SAMN36660388-rid18830023.guided.40, whole genome shotgun sequence	2878..4077	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	100	643 / 643	ABNKVV010000032.1 Salmonella enterica strain PNUSAS364670 SAMN36660388-rid18830023.denovo.34, whole genome shotgun sequence	1519..2161	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNKVV010000018.1 Salmonella enterica strain PNUSAS364670 SAMN36660388-rid18830023.denovo.18, whole genome shotgun sequence	35329..35470																																																avrA	ABNKVV010000001.1	446736..447604	100	869	0						
GCA_032425515.1_PDT001823606.1_genomic.fna	Salmonella_enterica	0.5206	375.921 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKVY010000001.1 Salmonella enterica strain PNUSAS364344 SAMN36660589-rid18829973.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKVY010000032.1 Salmonella enterica strain PNUSAS364344 SAMN36660589-rid18829973.guided.26, whole genome shotgun sequence	3644..4081	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKVY010000023.1 Salmonella enterica strain PNUSAS364344 SAMN36660589-rid18829973.denovo.23, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNKVY010000025.1 Salmonella enterica strain PNUSAS364344 SAMN36660589-rid18829973.denovo.25, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.93	374 / 374	ABNKVY010000018.1 Salmonella enterica strain PNUSAS364344 SAMN36660589-rid18829973.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABNKVY010000002.1	553690..554559	99.54	870	0						
GCA_032425535.1_PDT001823607.1_genomic.fna	Salmonella_enterica	0.5211	296.977 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKVX010000001.1 Salmonella enterica strain PNUSAS364739 SAMN36660899-rid18829983.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKVX010000034.1 Salmonella enterica strain PNUSAS364739 SAMN36660899-rid18829983.guided.23, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKVX010000002.1	371910..372779	99.31	870	0						
GCA_032425555.1_PDT001823594.1_genomic.fna	Salmonella_enterica	0.5213	333.428 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKWJ010000002.1 Salmonella enterica strain PNUSAS364744 SAMN36660991-rid18829853.denovo.02, whole genome shotgun sequence	162888..163325	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKWJ010000029.1 Salmonella enterica strain PNUSAS364744 SAMN36660991-rid18829853.guided.23, whole genome shotgun sequence	20586..21023	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKWJ010000019.1 Salmonella enterica strain PNUSAS364744 SAMN36660991-rid18829853.denovo.19, whole genome shotgun sequence	40565..41207	enterobacteriales	IncFII(S)	100	262 / 262	ABNKWJ010000023.1 Salmonella enterica strain PNUSAS364744 SAMN36660991-rid18829853.denovo.25, whole genome shotgun sequence	3405..3666																																																avrA	ABNKWJ010000001.1	552781..553650	99.54	870	0						
GCA_032425575.1_PDT001823604.1_genomic.fna	Salmonella_enterica	0.5215	273.214 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKVZ010000002.1 Salmonella enterica strain PNUSAS364735 SAMN36660902-rid18829953.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKVZ010000035.1 Salmonella enterica strain PNUSAS364735 SAMN36660902-rid18829953.guided.21, whole genome shotgun sequence	10637..11074	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKVZ010000018.1 Salmonella enterica strain PNUSAS364735 SAMN36660902-rid18829953.denovo.18, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNKVZ010000018.1 Salmonella enterica strain PNUSAS364735 SAMN36660902-rid18829953.denovo.18, whole genome shotgun sequence	30407..30668																																																avrA	ABNKVZ010000004.1	174640..175508	100	869	0						
GCA_032425595.1_PDT001823593.1_genomic.fna	Salmonella_enterica	0.5219	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKWK010000001.1 Salmonella enterica strain PNUSAS364645 SAMN36661013-rid18829843.denovo.01, whole genome shotgun sequence	790286..790723	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKWK010000031.1 Salmonella enterica strain PNUSAS364645 SAMN36661013-rid18829843.guided.21, whole genome shotgun sequence	6053..6490	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKWK010000005.1	93999..94868	98.966	870	0						
GCA_032425615.1_PDT001823592.1_genomic.fna	Salmonella_enterica	0.5219	228.27 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKWL010000002.1 Salmonella enterica strain PNUSAS364738 SAMN36660906-rid18829833.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKWL010000048.1 Salmonella enterica strain PNUSAS364738 SAMN36660906-rid18829833.guided.28, whole genome shotgun sequence	3511..3948	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKWL010000016.1 Salmonella enterica strain PNUSAS364738 SAMN36660906-rid18829833.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNKWL010000016.1 Salmonella enterica strain PNUSAS364738 SAMN36660906-rid18829833.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABNKWL010000007.1	143110..143978	100	869	0						
GCA_032425655.1_PDT001823603.1_genomic.fna	Salmonella_enterica	0.5214	196.845 KB	10	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKWB010000007.1 Salmonella enterica strain PNUSAS364737 SAMN36660900-rid18829943.denovo.07, whole genome shotgun sequence	78506..78943	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKWB010000062.1 Salmonella enterica strain PNUSAS364737 SAMN36660900-rid18829943.guided.37, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKWB010000001.1	39474..40342	99.31	870	0						
GCA_032425675.1_PDT001823600.1_genomic.fna	Salmonella_enterica	0.5212	270.242 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKWF010000004.1 Salmonella enterica strain PNUSAS364740 SAMN36660707-rid18829913.denovo.04, whole genome shotgun sequence	43438..43875	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKWF010000064.1 Salmonella enterica strain PNUSAS364740 SAMN36660707-rid18829913.guided.38, whole genome shotgun sequence	3916..4353	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKWF010000003.1	401137..402005	100	869	0						
GCA_032425685.1_PDT001823602.1_genomic.fna	Salmonella_enterica	0.5214	328.647 KB	5	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKWC010000001.1 Salmonella enterica strain PNUSAS364705 SAMN36660575-rid18829933.denovo.01, whole genome shotgun sequence	259225..259662	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKWC010000036.1 Salmonella enterica strain PNUSAS364705 SAMN36660575-rid18829933.guided.27, whole genome shotgun sequence	2279..2716	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKWC010000003.1	410926..411795	99.77	870	0						
GCA_032425715.1_PDT001823599.1_genomic.fna	Salmonella_enterica	0.5213	596.336 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNKWE010000001.1 Salmonella enterica strain PNUSAS364696 SAMN36660586-rid18829903.denovo.01, whole genome shotgun sequence	498764..499201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNKWE010000022.1 Salmonella enterica strain PNUSAS364696 SAMN36660586-rid18829903.guided.15, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	ABNKWE010000016.1 Salmonella enterica strain PNUSAS364696 SAMN36660586-rid18829903.denovo.19, whole genome shotgun sequence	967..1118																																																						avrA	ABNKWE010000002.1	558824..559693	99.425	870	0						
GCA_032425735.1_PDT001823601.1_genomic.fna	Salmonella_enterica	0.522	482.825 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNKWD010000002.1 Salmonella enterica strain PNUSAS364706 SAMN36660581-rid18829923.denovo.02, whole genome shotgun sequence	404008..404445	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNKWD010000039.1 Salmonella enterica strain PNUSAS364706 SAMN36660581-rid18829923.guided.27, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKWD010000001.1	517101..517970	99.655	870	0						
GCA_032425815.1_PDT001823597.1_genomic.fna	Salmonella_enterica	0.521	520.495 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNKWH010000001.1 Salmonella enterica strain PNUSAS364734 SAMN36660903-rid18829883.denovo.01, whole genome shotgun sequence	683500..683937	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNKWH010000028.1 Salmonella enterica strain PNUSAS364734 SAMN36660903-rid18829883.guided.17, whole genome shotgun sequence	13279..13716	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKWH010000013.1 Salmonella enterica strain PNUSAS364734 SAMN36660903-rid18829883.denovo.13, whole genome shotgun sequence	7417..7950																																																						avrA	ABNKWH010000002.1	562854..563723	99.77	870	0						
GCA_032425835.1_PDT001823587.1_genomic.fna	Salmonella_enterica	0.521	478.499 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKWO010000006.1 Salmonella enterica strain PNUSAS364649 SAMN36661010-rid18829783.denovo.06, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKWO010000030.1 Salmonella enterica strain PNUSAS364649 SAMN36661010-rid18829783.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKWO010000020.1 Salmonella enterica strain PNUSAS364649 SAMN36661010-rid18829783.denovo.23, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNKWO010000022.1 Salmonella enterica strain PNUSAS364649 SAMN36661010-rid18829783.denovo.25, whole genome shotgun sequence	3215..3476																																																avrA	ABNKWO010000001.1	585030..585899	99.54	870	0						
GCA_032425855.1_PDT001823588.1_genomic.fna	Salmonella_enterica	0.5226	381.389 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKWN010000001.1 Salmonella enterica strain PNUSAS364701 SAMN36660578-rid18829793.denovo.01, whole genome shotgun sequence	838577..839014	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKWN010000041.1 Salmonella enterica strain PNUSAS364701 SAMN36660578-rid18829793.guided.17, whole genome shotgun sequence	9708..10145	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKWN010000004.1	94005..94874	98.851	870	0						
GCA_032425895.1_PDT001823584.1_genomic.fna	Salmonella_enterica	0.5213	162.502 KB	11	aroC_6,dnaN_7,hemD_10,hisD_10,purE_2,sucA_10,thrA_14	359	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_2	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNKWR010000004.1 Salmonella enterica strain PNUSAS364743 SAMN36660990-rid18829753.denovo.004, whole genome shotgun sequence	62426..62863	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNKWR010000115.1 Salmonella enterica strain PNUSAS364743 SAMN36660990-rid18829753.guided.045, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKWR010000011.1	95115..95984	99.31	870	0						
GCA_032425905.1_PDT001823586.1_genomic.fna	Salmonella_enterica	0.5202	283.041 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKWP010000001.1 Salmonella enterica strain PNUSAS364732 SAMN36660905-rid18829773.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKWP010000033.1 Salmonella enterica strain PNUSAS364732 SAMN36660905-rid18829773.guided.24, whole genome shotgun sequence	883..1320	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKWP010000020.1 Salmonella enterica strain PNUSAS364732 SAMN36660905-rid18829773.denovo.21, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNKWP010000020.1 Salmonella enterica strain PNUSAS364732 SAMN36660905-rid18829773.denovo.21, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNKWP010000021.1 Salmonella enterica strain PNUSAS364732 SAMN36660905-rid18829773.denovo.22, whole genome shotgun sequence	32011..32384																																									avrA	ABNKWP010000014.1	39351..40220	99.54	870	0						
GCA_032425935.1_PDT001823579.1_genomic.fna	Salmonella_enterica	0.5216	458.337 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNKWT010000001.1 Salmonella enterica strain PNUSAS364704 SAMN36660576-rid18829703.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNKWT010000030.1 Salmonella enterica strain PNUSAS364704 SAMN36660576-rid18829703.guided.18, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKWT010000002.1	123631..124500	98.966	870	0						
GCA_032425955.1_PDT001823577.1_genomic.fna	Salmonella_enterica	0.5214	521.603 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNKWV010000001.1 Salmonella enterica strain PNUSAS364702 SAMN36660582-rid18829683.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNKWV010000028.1 Salmonella enterica strain PNUSAS364702 SAMN36660582-rid18829683.guided.19, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNKWV010000019.1 Salmonella enterica strain PNUSAS364702 SAMN36660582-rid18829683.denovo.22, whole genome shotgun sequence	239..369																																																						avrA	ABNKWV010000005.1	175930..176799	99.425	870	0						
GCA_032425965.1_PDT001823582.1_genomic.fna	Salmonella_enterica	0.5204	406.452 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		4	IncFIB(S),IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKWS010000001.1 Salmonella enterica strain PNUSAS364700 SAMN36660579-rid18829733.denovo.01, whole genome shotgun sequence	774552..774989	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKWS010000017.1 Salmonella enterica strain PNUSAS364700 SAMN36660579-rid18829733.denovo.18, whole genome shotgun sequence	9260..10096	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKWS010000017.1 Salmonella enterica strain PNUSAS364700 SAMN36660579-rid18829733.denovo.18, whole genome shotgun sequence	10096..10899	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNKWS010000034.1 Salmonella enterica strain PNUSAS364700 SAMN36660579-rid18829733.guided.21, whole genome shotgun sequence	12429..12866	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKWS010000036.1 Salmonella enterica strain PNUSAS364700 SAMN36660579-rid18829733.guided.24, whole genome shotgun sequence	7213..8049	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKWS010000036.1 Salmonella enterica strain PNUSAS364700 SAMN36660579-rid18829733.guided.24, whole genome shotgun sequence	6410..7213	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNKWS010000017.1 Salmonella enterica strain PNUSAS364700 SAMN36660579-rid18829733.denovo.18, whole genome shotgun sequence	17416..18276	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNKWS010000037.1 Salmonella enterica strain PNUSAS364700 SAMN36660579-rid18829733.guided.29, whole genome shotgun sequence	3944..4804	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNKWS010000017.1 Salmonella enterica strain PNUSAS364700 SAMN36660579-rid18829733.denovo.18, whole genome shotgun sequence	10960..11775	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNKWS010000036.1 Salmonella enterica strain PNUSAS364700 SAMN36660579-rid18829733.guided.24, whole genome shotgun sequence	5534..6349	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNKWS010000017.1 Salmonella enterica strain PNUSAS364700 SAMN36660579-rid18829733.denovo.18, whole genome shotgun sequence	15288..16487	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKWS010000036.1 Salmonella enterica strain PNUSAS364700 SAMN36660579-rid18829733.guided.24, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKWS010000021.1 Salmonella enterica strain PNUSAS364700 SAMN36660579-rid18829733.denovo.25, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNKWS010000016.1 Salmonella enterica strain PNUSAS364700 SAMN36660579-rid18829733.denovo.17, whole genome shotgun sequence	5032..5293		enterobacteriales	IncN	100	514 / 514	ABNKWS010000023.1 Salmonella enterica strain PNUSAS364700 SAMN36660579-rid18829733.denovo.27, whole genome shotgun sequence	859..1372		enterobacteriales	IncX1	98.66	374 / 374	ABNKWS010000018.1 Salmonella enterica strain PNUSAS364700 SAMN36660579-rid18829733.denovo.19, whole genome shotgun sequence	6057..6430																																		avrA	ABNKWS010000002.1	552869..553738	99.54	870	0						
GCA_032425995.1_PDT001823578.1_genomic.fna	Salmonella_enterica	0.5224	324.573 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKWU010000001.1 Salmonella enterica strain PNUSAS364693 SAMN36660584-rid18829693.denovo.01, whole genome shotgun sequence	608897..609334	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKWU010000032.1 Salmonella enterica strain PNUSAS364693 SAMN36660584-rid18829693.guided.15, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKWU010000004.1	149828..150697	99.655	870	0						
GCA_032426035.1_PDT001823576.1_genomic.fna	Salmonella_enterica	0.5224	272.3 KB	7	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNKWW010000001.1 Salmonella enterica strain PNUSAS364708 SAMN36660587-rid18829673.denovo.01, whole genome shotgun sequence	405412..405849	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNKWW010000035.1 Salmonella enterica strain PNUSAS364708 SAMN36660587-rid18829673.guided.20, whole genome shotgun sequence	10305..10742	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKWW010000007.1	94166..95034	99.425	870	0						
GCA_032426055.1_PDT001823566.1_genomic.fna	Salmonella_enterica	0.5233	397.79 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKWZ010000001.1 Salmonella enterica strain PNUSAS364668 SAMN36660389-rid18829573.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKWZ010000030.1 Salmonella enterica strain PNUSAS364668 SAMN36660389-rid18829573.guided.22, whole genome shotgun sequence	10534..10971	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKWZ010000003.1	150817..151686	99.655	870	0						
GCA_032426075.1_PDT001823567.1_genomic.fna	Salmonella_enterica	0.5212	406.453 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKWY010000001.1 Salmonella enterica strain PNUSAS364666 SAMN36660391-rid18829583.denovo.01, whole genome shotgun sequence	774527..774964	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKWY010000027.1 Salmonella enterica strain PNUSAS364666 SAMN36660391-rid18829583.guided.14, whole genome shotgun sequence	26803..27240	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKWY010000018.1 Salmonella enterica strain PNUSAS364666 SAMN36660391-rid18829583.denovo.21, whole genome shotgun sequence	1935..2577	enterobacteriales	IncFII(S)	100	262 / 262	ABNKWY010000020.1 Salmonella enterica strain PNUSAS364666 SAMN36660391-rid18829583.denovo.23, whole genome shotgun sequence	3013..3274																																																avrA	ABNKWY010000002.1	553559..554428	99.54	870	0						
GCA_032426115.1_PDT001823545.1_genomic.fna	Salmonella_enterica	0.522	521.154 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNKXB010000001.1 Salmonella enterica strain PNUSAS364348 SAMN36659865-rid18829093.denovo.01, whole genome shotgun sequence	683874..684311	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNKXB010000024.1 Salmonella enterica strain PNUSAS364348 SAMN36659865-rid18829093.guided.18, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKXB010000002.1	563786..564655	99.77	870	0						
GCA_032426135.1_PDT001823544.1_genomic.fna	Salmonella_enterica	0.5213	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKXC010000001.1 Salmonella enterica strain PNUSAS364343 SAMN36659862-rid18829083.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKXC010000021.1 Salmonella enterica strain PNUSAS364343 SAMN36659862-rid18829083.guided.13, whole genome shotgun sequence	32389..32826	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKXC010000012.1 Salmonella enterica strain PNUSAS364343 SAMN36659862-rid18829083.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNKXC010000012.1 Salmonella enterica strain PNUSAS364343 SAMN36659862-rid18829083.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABNKXC010000002.1	553636..554505	99.54	870	0						
GCA_032426155.1_PDT001823542.1_genomic.fna	Salmonella_enterica	0.5195	276.524 KB	4	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	4	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,qnrB19,qnrB19,sul2,sul2	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),Col440I,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNKXE010000001.1 Salmonella enterica strain PNUSAS364346 SAMN36659863-rid18829073.denovo.01, whole genome shotgun sequence	813799..814236	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNKXE010000048.1 Salmonella enterica strain PNUSAS364346 SAMN36659863-rid18829073.guided.23, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNKXE010000002.1 Salmonella enterica strain PNUSAS364346 SAMN36659863-rid18829073.denovo.02, whole genome shotgun sequence	311900..312322	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNKXE010000047.1 Salmonella enterica strain PNUSAS364346 SAMN36659863-rid18829073.guided.22, whole genome shotgun sequence	22728..23150	Fosfomycin	LAPJ01000014	qnrB19	100	645/645	ABNKXE010000029.1 Salmonella enterica strain PNUSAS364346 SAMN36659863-rid18829073.denovo.34, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNKXE010000052.1 Salmonella enterica strain PNUSAS364346 SAMN36659863-rid18829073.guided.36, whole genome shotgun sequence	620..1264	Ciprofloxacin	EU432277	sul2	100	816/816	ABNKXE010000026.1 Salmonella enterica strain PNUSAS364346 SAMN36659863-rid18829073.denovo.30, whole genome shotgun sequence	592..1407	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNKXE010000051.1 Salmonella enterica strain PNUSAS364346 SAMN36659863-rid18829073.guided.31, whole genome shotgun sequence	459..1274	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNKXE010000028.1 Salmonella enterica strain PNUSAS364346 SAMN36659863-rid18829073.denovo.33, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNKXE010000029.1 Salmonella enterica strain PNUSAS364346 SAMN36659863-rid18829073.denovo.34, whole genome shotgun sequence	1150..1280		enterobacteriales	Col440I	91.23	114 / 114	ABNKXE010000052.1 Salmonella enterica strain PNUSAS364346 SAMN36659863-rid18829073.guided.36, whole genome shotgun sequence	3..116		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNKXE010000022.1 Salmonella enterica strain PNUSAS364346 SAMN36659863-rid18829073.denovo.24, whole genome shotgun sequence	7578..7719		enterobacteriales	IncX1	98.66	374 / 374	ABNKXE010000019.1 Salmonella enterica strain PNUSAS364346 SAMN36659863-rid18829073.denovo.19, whole genome shotgun sequence	1526..1899																											avrA	ABNKXE010000003.1	184283..185152	99.655	870	0						
GCA_032426175.1_PDT001823543.1_genomic.fna	Salmonella_enterica	0.5191	244.678 KB	7	aroC_83,dnaN_46,hemD_25,hisD_148,purE_33,sucA_23,thrA_63	450	13:d:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	2	Col440II,IncFII(p96A)	aroC	100	100	aroC_83	dnaN	100	100	dnaN_46	hemD	100	100	hemD_25	hisD	100	100	hisD_148	purE	100	100	purE_33	sucA	100	100	sucA_23	thrA	100	100	thrA_63	13	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Telelkebir		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNKXD010000014.1 Salmonella enterica strain PNUSAS364349 SAMN36659866-rid18827733.denovo.14, whole genome shotgun sequence	80106..80543	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNKXD010000052.1 Salmonella enterica strain PNUSAS364349 SAMN36659866-rid18827733.guided.29, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNKXD010000002.1 Salmonella enterica strain PNUSAS364349 SAMN36659866-rid18827733.denovo.02, whole genome shotgun sequence	163785..164207	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNKXD010000050.1 Salmonella enterica strain PNUSAS364349 SAMN36659866-rid18827733.guided.22, whole genome shotgun sequence	53953..54375	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440II	97.16	282 / 282	ABNKXD010000032.1 Salmonella enterica strain PNUSAS364349 SAMN36659866-rid18827733.denovo.36, whole genome shotgun sequence	5136..5417	enterobacteriales	IncFII(p96A)	99.44	534 / 534	ABNKXD010000023.1 Salmonella enterica strain PNUSAS364349 SAMN36659866-rid18827733.denovo.24, whole genome shotgun sequence	15023..15556																																																											
GCA_032426195.1_PDT001823540.1_genomic.fna	Salmonella_enterica	0.5219	109.439 KB	13	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKXG010000034.1 Salmonella enterica strain PNUSAS364626 SAMN36655837-rid18829553.denovo.34, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKXG010000083.1 Salmonella enterica strain PNUSAS364626 SAMN36655837-rid18829553.guided.70, whole genome shotgun sequence	2359..2796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	ABNKXG010000031.1 Salmonella enterica strain PNUSAS364626 SAMN36655837-rid18829553.denovo.31, whole genome shotgun sequence	17453..17712																																																																	
GCA_032426215.1_PDT001823541.1_genomic.fna	Salmonella_enterica	0.5207	200.983 KB	9	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNKXF010000001.1 Salmonella enterica strain PNUSAS364625 SAMN36655838-rid18827723.denovo.01, whole genome shotgun sequence	383356..383793	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNKXF010000067.1 Salmonella enterica strain PNUSAS364625 SAMN36655838-rid18827723.guided.48, whole genome shotgun sequence	5106..5543	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKXF010000005.1	149702..150571	99.54	870	0						
GCA_032426435.1_PDT001823525.1_genomic.fna	Salmonella_enterica	0.5209	689.426 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKXU010000001.1 Salmonella enterica strain PNUSAS364594 SAMN36653442-rid18829013.denovo.01, whole genome shotgun sequence	396390..396827	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNKXU010000023.1 Salmonella enterica strain PNUSAS364594 SAMN36653442-rid18829013.guided.13, whole genome shotgun sequence	28679..29116	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKXU010000003.1	496411..497279	99.425	870	0						
GCA_032426455.1_PDT001823527.1_genomic.fna	Salmonella_enterica	0.5211	478.724 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKXS010000001.1 Salmonella enterica strain PNUSAS364592 SAMN36653432-rid18829023.denovo.01, whole genome shotgun sequence	857643..858080	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKXS010000020.1 Salmonella enterica strain PNUSAS364592 SAMN36653432-rid18829023.guided.13, whole genome shotgun sequence	9487..9924	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKXS010000011.1 Salmonella enterica strain PNUSAS364592 SAMN36653432-rid18829023.denovo.11, whole genome shotgun sequence	40524..41166	enterobacteriales	IncFII(S)	100	262 / 262	ABNKXS010000015.1 Salmonella enterica strain PNUSAS364592 SAMN36653432-rid18829023.denovo.18, whole genome shotgun sequence	3438..3699																																																avrA	ABNKXS010000002.1	553553..554422	99.54	870	0						
GCA_032426485.1_PDT001823526.1_genomic.fna	Salmonella_enterica	0.5226	526.715 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKXT010000001.1 Salmonella enterica strain PNUSAS364598 SAMN36653448-rid18827643.denovo.01, whole genome shotgun sequence	622355..622792	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKXT010000027.1 Salmonella enterica strain PNUSAS364598 SAMN36653448-rid18827643.guided.20, whole genome shotgun sequence	5244..5681	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKXT010000003.1	150300..151169	99.655	870	0						
GCA_032426515.1_PDT001823524.1_genomic.fna	Salmonella_enterica	0.5213	754.868 KB	3	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNKXV010000001.1 Salmonella enterica strain PNUSAS364584 SAMN36653447-rid18829003.denovo.01, whole genome shotgun sequence	479379..479816	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNKXV010000013.1 Salmonella enterica strain PNUSAS364584 SAMN36653447-rid18829003.guided.11, whole genome shotgun sequence	6374..6811	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKXV010000004.1	568749..569618	99.425	870	0						
GCA_032426535.1_PDT001823523.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKXW010000001.1 Salmonella enterica strain PNUSAS364601 SAMN36653454-rid18828993.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKXW010000022.1 Salmonella enterica strain PNUSAS364601 SAMN36653454-rid18828993.guided.18, whole genome shotgun sequence	2103..2540	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKXW010000012.1 Salmonella enterica strain PNUSAS364601 SAMN36653454-rid18828993.denovo.12, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNKXW010000014.1 Salmonella enterica strain PNUSAS364601 SAMN36653454-rid18828993.denovo.16, whole genome shotgun sequence	3395..3656																																																avrA	ABNKXW010000002.1	553637..554506	99.54	870	0						
GCA_032426555.1_PDT001823522.1_genomic.fna	Salmonella_enterica	0.5208	570.278 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKXX010000001.1 Salmonella enterica strain PNUSAS364595 SAMN36653452-rid18828983.denovo.01, whole genome shotgun sequence	642724..643161	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKXX010000017.1 Salmonella enterica strain PNUSAS364595 SAMN36653452-rid18828983.guided.15, whole genome shotgun sequence	501..938	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032426575.1_PDT001823521.1_genomic.fna	Salmonella_enterica	0.5216	709.456 KB	3	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNKXZ010000001.1 Salmonella enterica strain PNUSAS364600 SAMN36653450-rid18827633.denovo.01, whole genome shotgun sequence	540044..540481	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNKXZ010000018.1 Salmonella enterica strain PNUSAS364600 SAMN36653450-rid18827633.guided.14, whole genome shotgun sequence	26100..26537	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKXZ010000003.1	496943..497811	99.655	869	0						
GCA_032426615.1_PDT001823517.1_genomic.fna	Salmonella_enterica	0.5222	578.323 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKYC010000002.1 Salmonella enterica strain PNUSAS364588 SAMN36653437-rid18828973.denovo.02, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNKYC010000023.1 Salmonella enterica strain PNUSAS364588 SAMN36653437-rid18828973.guided.19, whole genome shotgun sequence	1385..1822	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKYC010000003.1	497124..497992	99.425	870	0						
GCA_032426625.1_PDT001823520.1_genomic.fna	Salmonella_enterica	0.5209	443.283 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKXY010000001.1 Salmonella enterica strain PNUSAS364605 SAMN36653445-rid18829533.denovo.01, whole genome shotgun sequence	800756..801193	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKXY010000029.1 Salmonella enterica strain PNUSAS364605 SAMN36653445-rid18829533.guided.19, whole genome shotgun sequence	3385..3822	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNKXY010000020.1 Salmonella enterica strain PNUSAS364605 SAMN36653445-rid18829533.denovo.24, whole genome shotgun sequence	1805..2449	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNKXY010000030.1 Salmonella enterica strain PNUSAS364605 SAMN36653445-rid18829533.guided.23, whole genome shotgun sequence	1136..1780	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNKXY010000020.1 Salmonella enterica strain PNUSAS364605 SAMN36653445-rid18829533.denovo.24, whole genome shotgun sequence	1149..1279	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNKXY010000030.1 Salmonella enterica strain PNUSAS364605 SAMN36653445-rid18829533.guided.23, whole genome shotgun sequence	480..610																																																avrA	ABNKXY010000005.1	183117..183986	98.966	870	0						
GCA_032426655.1_PDT001823518.1_genomic.fna	Salmonella_enterica	0.5224	759.072 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNKYB010000001.1 Salmonella enterica strain PNUSAS364586 SAMN36653441-rid18829523.denovo.01, whole genome shotgun sequence	638994..639431	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNKYB010000028.1 Salmonella enterica strain PNUSAS364586 SAMN36653441-rid18829523.guided.23, whole genome shotgun sequence	2997..3434	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNKYB010000015.1 Salmonella enterica strain PNUSAS364586 SAMN36653441-rid18829523.denovo.15, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNKYB010000026.1 Salmonella enterica strain PNUSAS364586 SAMN36653441-rid18829523.guided.19, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNKYB010000015.1 Salmonella enterica strain PNUSAS364586 SAMN36653441-rid18829523.denovo.15, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNKYB010000027.1 Salmonella enterica strain PNUSAS364586 SAMN36653441-rid18829523.guided.22, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNKYB010000015.1 Salmonella enterica strain PNUSAS364586 SAMN36653441-rid18829523.denovo.15, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNKYB010000026.1 Salmonella enterica strain PNUSAS364586 SAMN36653441-rid18829523.guided.19, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNKYB010000015.1 Salmonella enterica strain PNUSAS364586 SAMN36653441-rid18829523.denovo.15, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNKYB010000026.1 Salmonella enterica strain PNUSAS364586 SAMN36653441-rid18829523.guided.19, whole genome shotgun sequence	9840..11114	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNKYB010000015.1 Salmonella enterica strain PNUSAS364586 SAMN36653441-rid18829523.denovo.15, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNKYB010000026.1 Salmonella enterica strain PNUSAS364586 SAMN36653441-rid18829523.guided.19, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNKYB010000014.1 Salmonella enterica strain PNUSAS364586 SAMN36653441-rid18829523.denovo.14, whole genome shotgun sequence	4434..4684																																																						avrA	ABNKYB010000003.1	553473..554342	99.77	870	0						
GCA_032426675.1_PDT001823516.1_genomic.fna	Salmonella_enterica	0.5209	444.638 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKYD010000001.1 Salmonella enterica strain PNUSAS364608 SAMN36653453-rid18827613.denovo.01, whole genome shotgun sequence	644346..644783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKYD010000019.1 Salmonella enterica strain PNUSAS364608 SAMN36653453-rid18827613.guided.15, whole genome shotgun sequence	14379..14816	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032426695.1_PDT001823515.1_genomic.fna	Salmonella_enterica	0.5215	593.411 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKYF010000001.1 Salmonella enterica strain PNUSAS364593 SAMN36653444-rid18829513.denovo.01, whole genome shotgun sequence	409006..409443	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNKYF010000024.1 Salmonella enterica strain PNUSAS364593 SAMN36653444-rid18829513.guided.15, whole genome shotgun sequence	15883..16320	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKYF010000003.1	497002..497870	99.425	870	0						
GCA_032426715.1_PDT001823513.1_genomic.fna	Salmonella_enterica	0.5195	593.584 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(p14),IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKYG010000001.1 Salmonella enterica strain PNUSAS364607 SAMN36653449-rid18829503.denovo.01, whole genome shotgun sequence	498159..498596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNKYG010000027.1 Salmonella enterica strain PNUSAS364607 SAMN36653449-rid18829503.guided.19, whole genome shotgun sequence	1219..1656	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNKYG010000011.1 Salmonella enterica strain PNUSAS364607 SAMN36653449-rid18829503.denovo.11, whole genome shotgun sequence	17040..17682	enterobacteriales	IncFII(p14)	92.02	263 / 262	ABNKYG010000011.1 Salmonella enterica strain PNUSAS364607 SAMN36653449-rid18829503.denovo.11, whole genome shotgun sequence	33612..33870		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNKYG010000013.1 Salmonella enterica strain PNUSAS364607 SAMN36653449-rid18829503.denovo.13, whole genome shotgun sequence	28440..28973																																									avrA	ABNKYG010000003.1	498412..498973	99.645	563	0	avrA	ABNKYG010000003.1	498973..499231	98.842	259	8.85e-131
GCA_032426755.1_PDT001823512.1_genomic.fna	Salmonella_enterica	0.522	400.784 KB	4	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKYH010000001.1 Salmonella enterica strain PNUSAS364602 SAMN36653438-rid18828953.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKYH010000027.1 Salmonella enterica strain PNUSAS364602 SAMN36653438-rid18828953.guided.22, whole genome shotgun sequence	1758..2195	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKYH010000003.1	453801..454670	99.31	870	0						
GCA_032426775.1_PDT001823509.1_genomic.fna	Salmonella_enterica	0.5218	315.377 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKYK010000002.1 Salmonella enterica strain PNUSAS364599 SAMN36653435-rid18827593.denovo.02, whole genome shotgun sequence	43116..43553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKYK010000032.1 Salmonella enterica strain PNUSAS364599 SAMN36653435-rid18827593.guided.22, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKYK010000005.1	94202..95071	99.31	870	0						
GCA_032426795.1_PDT001823511.1_genomic.fna	Salmonella_enterica	0.5226	379.288 KB	5	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNKYI010000003.1 Salmonella enterica strain PNUSAS364596 SAMN36653451-rid18827603.denovo.03, whole genome shotgun sequence	378504..378941	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNKYI010000031.1 Salmonella enterica strain PNUSAS364596 SAMN36653451-rid18827603.guided.22, whole genome shotgun sequence	13516..13953	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNKYI010000012.1 Salmonella enterica strain PNUSAS364596 SAMN36653451-rid18827603.denovo.12, whole genome shotgun sequence	83026..83167																																																						avrA	ABNKYI010000002.1	443123..443992	99.425	870	0						
GCA_032426815.1_PDT001823510.1_genomic.fna	Salmonella_enterica	0.522	289.53 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKYJ010000003.1 Salmonella enterica strain PNUSAS364589 SAMN36653446-rid18829493.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKYJ010000037.1 Salmonella enterica strain PNUSAS364589 SAMN36653446-rid18829493.guided.23, whole genome shotgun sequence	41588..42025	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKYJ010000016.1 Salmonella enterica strain PNUSAS364589 SAMN36653446-rid18829493.denovo.16, whole genome shotgun sequence	48478..49120	enterobacteriales	IncFII(S)	100	262 / 262	ABNKYJ010000016.1 Salmonella enterica strain PNUSAS364589 SAMN36653446-rid18829493.denovo.16, whole genome shotgun sequence	64205..64466																																																avrA	ABNKYJ010000001.1	451844..452712	100	869	0						
GCA_032426835.1_PDT001823506.1_genomic.fna	Salmonella_enterica	0.5213	376.533 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKYN010000004.1 Salmonella enterica strain PNUSAS364606 SAMN36653434-rid18827583.denovo.04, whole genome shotgun sequence	68365..68802	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKYN010000040.1 Salmonella enterica strain PNUSAS364606 SAMN36653434-rid18827583.guided.14, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKYN010000014.1 Salmonella enterica strain PNUSAS364606 SAMN36653434-rid18827583.denovo.15, whole genome shotgun sequence	48421..49063	enterobacteriales	IncFII(S)	100	262 / 262	ABNKYN010000014.1 Salmonella enterica strain PNUSAS364606 SAMN36653434-rid18827583.denovo.15, whole genome shotgun sequence	64148..64409																																																avrA	ABNKYN010000001.1	451718..452586	100	869	0						
GCA_032426855.1_PDT001823508.1_genomic.fna	Salmonella_enterica	0.5207	377.866 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKYL010000001.1 Salmonella enterica strain PNUSAS364585 SAMN36653429-rid18829483.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKYL010000030.1 Salmonella enterica strain PNUSAS364585 SAMN36653429-rid18829483.guided.14, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKYL010000005.1	120799..121668	99.31	870	0						
GCA_032426875.1_PDT001823505.1_genomic.fna	Salmonella_enterica	0.522	395.206 KB	4	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNKYM010000001.1 Salmonella enterica strain PNUSAS364597 SAMN36653440-rid18829473.denovo.01, whole genome shotgun sequence	170660..171097	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNKYM010000026.1 Salmonella enterica strain PNUSAS364597 SAMN36653440-rid18829473.guided.19, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKYM010000003.1	360428..361297	99.31	870	0						
GCA_032426895.1_PDT001823504.1_genomic.fna	Salmonella_enterica	0.5209	718.781 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKYO010000001.1 Salmonella enterica strain PNUSAS364603 SAMN36653439-rid18827573.denovo.01, whole genome shotgun sequence	643277..643714	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNKYO010000018.1 Salmonella enterica strain PNUSAS364603 SAMN36653439-rid18827573.guided.14, whole genome shotgun sequence	6754..7191	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKYO010000003.1	544832..545700	99.425	870	0						
GCA_032426915.1_PDT001823502.1_genomic.fna	Salmonella_enterica	0.5227	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKYQ010000001.1 Salmonella enterica strain PNUSAS364604 SAMN36653431-rid18828933.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKYQ010000024.1 Salmonella enterica strain PNUSAS364604 SAMN36653431-rid18828933.guided.16, whole genome shotgun sequence	5194..5631	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKYQ010000002.1	147026..147895	98.966	870	0						
GCA_032426935.1_PDT001823501.1_genomic.fna	Salmonella_enterica	0.5219	728.62 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNKYR010000001.1 Salmonella enterica strain PNUSAS364590 SAMN36653430-rid18827563.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNKYR010000020.1 Salmonella enterica strain PNUSAS364590 SAMN36653430-rid18827563.guided.16, whole genome shotgun sequence	3296..3733	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKYR010000003.1	561835..562705	99.656	871	0						
GCA_032426955.1_PDT001823503.1_genomic.fna	Salmonella_enterica	0.5215	190.073 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNKYP010000001.1 Salmonella enterica strain PNUSAS364587 SAMN36653436-rid18829463.denovo.01, whole genome shotgun sequence	408857..409294	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNKYP010000045.1 Salmonella enterica strain PNUSAS364587 SAMN36653436-rid18829463.guided.28, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032426975.1_PDT001823251.1_genomic.fna	Salmonella_enterica	0.5209	476.743 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKYS010000001.1 Salmonella enterica strain PNUSAS364551 SAMN36652694-rid18826403.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKYS010000028.1 Salmonella enterica strain PNUSAS364551 SAMN36652694-rid18826403.guided.17, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKYS010000016.1 Salmonella enterica strain PNUSAS364551 SAMN36652694-rid18826403.denovo.18, whole genome shotgun sequence	48513..49155	enterobacteriales	IncFII(S)	100	262 / 262	ABNKYS010000016.1 Salmonella enterica strain PNUSAS364551 SAMN36652694-rid18826403.denovo.18, whole genome shotgun sequence	4260..4521																																																avrA	ABNKYS010000002.1	553190..554059	99.54	870	0						
GCA_032426995.1_PDT001823246.1_genomic.fna	Salmonella_enterica	0.5211	477.078 KB	5	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKYW010000001.1 Salmonella enterica strain PNUSAS364549 SAMN36652630-rid18826363.denovo.01, whole genome shotgun sequence	293265..293702	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKYW010000033.1 Salmonella enterica strain PNUSAS364549 SAMN36652630-rid18826363.guided.24, whole genome shotgun sequence	4712..5149	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKYW010000024.1 Salmonella enterica strain PNUSAS364549 SAMN36652630-rid18826363.denovo.26, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNKYW010000025.1 Salmonella enterica strain PNUSAS364549 SAMN36652630-rid18826363.denovo.28, whole genome shotgun sequence	3392..3653																																																avrA	ABNKYW010000002.1	506641..507510	99.54	870	0						
GCA_032427005.1_PDT001823249.1_genomic.fna	Salmonella_enterica	0.5217	385.359 KB	5	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNKYT010000007.1 Salmonella enterica strain PNUSAS364565 SAMN36652692-rid18826393.denovo.07, whole genome shotgun sequence	145327..145764	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNKYT010000023.1 Salmonella enterica strain PNUSAS364565 SAMN36652692-rid18826393.guided.18, whole genome shotgun sequence	31293..31730	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNKYT010000003.1	309688..310557	99.77	870	0						
GCA_032427035.1_PDT001823248.1_genomic.fna	Salmonella_enterica	0.5213	225.556 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKYV010000001.1 Salmonella enterica strain PNUSAS364563 SAMN36652689-rid18826383.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKYV010000053.1 Salmonella enterica strain PNUSAS364563 SAMN36652689-rid18826383.guided.26, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKYV010000034.1 Salmonella enterica strain PNUSAS364563 SAMN36652689-rid18826383.denovo.36, whole genome shotgun sequence	6823..7465	enterobacteriales	IncFII(S)	100	262 / 262	ABNKYV010000021.1 Salmonella enterica strain PNUSAS364563 SAMN36652689-rid18826383.denovo.21, whole genome shotgun sequence	3698..3959																																																avrA	ABNKYV010000004.1	155216..156084	100	869	0						
GCA_032427055.1_PDT001823247.1_genomic.fna	Salmonella_enterica	0.5212	283.023 KB	4	aroC_5,dnaN_580,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	3233	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_580	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKYU010000001.1 Salmonella enterica strain PNUSAS364546 SAMN36652637-rid18826373.denovo.01, whole genome shotgun sequence	767803..768240	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKYU010000032.1 Salmonella enterica strain PNUSAS364546 SAMN36652637-rid18826373.guided.21, whole genome shotgun sequence	3202..3639	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKYU010000020.1 Salmonella enterica strain PNUSAS364546 SAMN36652637-rid18826373.denovo.23, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNKYU010000021.1 Salmonella enterica strain PNUSAS364546 SAMN36652637-rid18826373.denovo.24, whole genome shotgun sequence	3400..3661																																																avrA	ABNKYU010000002.1	553062..553931	99.54	870	0						
GCA_032427075.1_PDT001823245.1_genomic.fna	Salmonella_enterica	0.5203	249.995 KB	7	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKYX010000001.1 Salmonella enterica strain PNUSAS364548 SAMN36652693-rid18826613.denovo.01, whole genome shotgun sequence	477381..477818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKYX010000040.1 Salmonella enterica strain PNUSAS364548 SAMN36652693-rid18826613.guided.19, whole genome shotgun sequence	36832..37269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKYX010000021.1 Salmonella enterica strain PNUSAS364548 SAMN36652693-rid18826613.denovo.22, whole genome shotgun sequence	2465..2998																																																						avrA	ABNKYX010000018.1	39476..40346	99.196	871	0						
GCA_032427095.1_PDT001823244.1_genomic.fna	Salmonella_enterica	0.5217	280.934 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col8282,IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKYY010000001.1 Salmonella enterica strain PNUSAS364544 SAMN36652634-rid18826353.denovo.01, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKYY010000037.1 Salmonella enterica strain PNUSAS364544 SAMN36652634-rid18826353.guided.23, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col8282	90.1	202 / 207	ABNKYY010000026.1 Salmonella enterica strain PNUSAS364544 SAMN36652634-rid18826353.denovo.28, whole genome shotgun sequence	416..617	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNKYY010000017.1 Salmonella enterica strain PNUSAS364544 SAMN36652634-rid18826353.denovo.17, whole genome shotgun sequence	72635..72776																																																avrA	ABNKYY010000009.1	39446..40315	98.966	870	0						
GCA_032427115.1_PDT001823242.1_genomic.fna	Salmonella_enterica	0.5208	213.19 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),ColRNAI,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKZB010000001.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.denovo.01, whole genome shotgun sequence	223837..224274	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKZB010000046.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.denovo.51, whole genome shotgun sequence	2501..3337	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKZB010000046.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.denovo.51, whole genome shotgun sequence	3337..4140	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNKZB010000071.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.guided.25, whole genome shotgun sequence	37307..37744	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKZB010000075.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.guided.50, whole genome shotgun sequence	4817..5653	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNKZB010000075.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.guided.50, whole genome shotgun sequence	4014..4817	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNKZB010000024.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.denovo.24, whole genome shotgun sequence	48138..49283	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNKZB010000074.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.guided.46, whole genome shotgun sequence	10694..11839	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.27	1214/1215	ABNKZB010000047.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.denovo.52, whole genome shotgun sequence	538..1751	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNKZB010000076.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.guided.62, whole genome shotgun sequence	1521..2734	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNKZB010000046.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.denovo.51, whole genome shotgun sequence	4201..5016	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNKZB010000075.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.guided.50, whole genome shotgun sequence	3138..3953	Sulfamethoxazole	AY034138	tet(A)	100	1240/1275	ABNKZB010000046.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.denovo.51, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNKZB010000075.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.guided.50, whole genome shotgun sequence	6914..8188	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNKZB010000051.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.denovo.56, whole genome shotgun sequence	371..501	enterobacteriales	ColRNAI	90.08	131 / 130	ABNKZB010000053.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.denovo.58, whole genome shotgun sequence	3981..4111		enterobacteriales	IncC	100	417 / 417	ABNKZB010000027.1 Salmonella enterica strain PNUSAS364550 SAMN36652632-rid18826603.denovo.29, whole genome shotgun sequence	17493..17909																																									avrA	ABNKZB010000002.1	402524..403393	99.885	870	0						
GCA_032427135.1_PDT001823243.1_genomic.fna	Salmonella_enterica	0.5206	279.622 KB	7	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKYZ010000012.1 Salmonella enterica strain PNUSAS364564 SAMN36652691-rid18826343.denovo.12, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKYZ010000044.1 Salmonella enterica strain PNUSAS364564 SAMN36652691-rid18826343.guided.30, whole genome shotgun sequence	21129..21566	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKYZ010000022.1 Salmonella enterica strain PNUSAS364564 SAMN36652691-rid18826343.denovo.22, whole genome shotgun sequence	34957..35490																																																						avrA	ABNKYZ010000001.1	39344..40210	98.966	870	0						
GCA_032427155.1_PDT001823241.1_genomic.fna	Salmonella_enterica	0.521	393.811 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNKZC010000010.1 Salmonella enterica strain PNUSAS364562 SAMN36652690-rid18826333.denovo.10, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNKZC010000042.1 Salmonella enterica strain PNUSAS364562 SAMN36652690-rid18826333.guided.31, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNKZC010000017.1 Salmonella enterica strain PNUSAS364562 SAMN36652690-rid18826333.denovo.17, whole genome shotgun sequence	34904..35437																																																						avrA	ABNKZC010000002.1	187782..188648	98.966	870	0						
GCA_032427195.1_PDT001823239.1_genomic.fna	Salmonella_enterica	0.521	259.488 KB	7	aroC_18,dnaN_437,hemD_10,hisD_121,purE_193,sucA_9,thrA_319	2023	47:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		1	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_437	hemD	100	100	hemD_10	hisD	100	100	hisD_121	purE	100	100	purE_193	sucA	100	100	sucA_9	thrA	100	100	thrA_319	47	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I 47:z4,z23:-	This predicted serotype is not in the Kauffman-White scheme. This antigenic profile has been associated with serotype 'IIIa 47:z4,z23:-' in the Kauffman-White scheme. The existence of the same antigenic formula in multiple species or subspecies is well documented in the Kauffman-White Scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNKZD010000001.1 Salmonella enterica strain PNUSAS364542 SAMN36652635-rid18826323.denovo.01, whole genome shotgun sequence	489339..489776	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNKZD010000045.1 Salmonella enterica strain PNUSAS364542 SAMN36652635-rid18826323.guided.21, whole genome shotgun sequence	35946..36383	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNKZD010000036.1 Salmonella enterica strain PNUSAS364542 SAMN36652635-rid18826323.denovo.39, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNKZD010000048.1 Salmonella enterica strain PNUSAS364542 SAMN36652635-rid18826323.guided.44, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNKZD010000035.1 Salmonella enterica strain PNUSAS364542 SAMN36652635-rid18826323.denovo.38, whole genome shotgun sequence	2208..2338	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNKZD010000036.1 Salmonella enterica strain PNUSAS364542 SAMN36652635-rid18826323.denovo.39, whole genome shotgun sequence	1522..1652		enterobacteriales	Col(pHAD28)	91.07	112 / 131	ABNKZD010000038.1 Salmonella enterica strain PNUSAS364542 SAMN36652635-rid18826323.denovo.41, whole genome shotgun sequence	2225..2336		enterobacteriales	Col(pHAD28)	91.67	132 / 131	ABNKZD010000039.1 Salmonella enterica strain PNUSAS364542 SAMN36652635-rid18826323.denovo.42, whole genome shotgun sequence	1268..1398																																		avrA	ABNKZD010000005.1	39352..40221	99.195	870	0						
GCA_032427215.1_PDT001823238.1_genomic.fna	Salmonella_enterica	0.521	480.935 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKZE010000001.1 Salmonella enterica strain PNUSAS364552 SAMN36652631-rid18826313.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKZE010000026.1 Salmonella enterica strain PNUSAS364552 SAMN36652631-rid18826313.guided.17, whole genome shotgun sequence	8799..9236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKZE010000017.1 Salmonella enterica strain PNUSAS364552 SAMN36652631-rid18826313.denovo.18, whole genome shotgun sequence	40535..41177	enterobacteriales	IncFII(S)	100	262 / 262	ABNKZE010000020.1 Salmonella enterica strain PNUSAS364552 SAMN36652631-rid18826313.denovo.23, whole genome shotgun sequence	3385..3646																																																avrA	ABNKZE010000002.1	553077..553946	99.54	870	0						
GCA_032427225.1_PDT001823237.1_genomic.fna	Salmonella_enterica	0.52	207.798 KB	7	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(pCRY),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNKZF010000012.1 Salmonella enterica strain PNUSAS364545 SAMN36652636-rid18826303.denovo.012, whole genome shotgun sequence	80748..81185	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNKZF010000100.1 Salmonella enterica strain PNUSAS364545 SAMN36652636-rid18826303.guided.031, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNKZF010000029.1 Salmonella enterica strain PNUSAS364545 SAMN36652636-rid18826303.denovo.030, whole genome shotgun sequence	12646..13288	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNKZF010000027.1 Salmonella enterica strain PNUSAS364545 SAMN36652636-rid18826303.denovo.028, whole genome shotgun sequence	21066..21658		enterobacteriales	IncI1-I(Alpha)	98.6	143 / 142	ABNKZF010000019.1 Salmonella enterica strain PNUSAS364545 SAMN36652636-rid18826303.denovo.020, whole genome shotgun sequence	2190..2332																																									avrA	ABNKZF010000009.1	140547..141415	99.425	870	0						
GCA_032427255.1_PDT001823236.1_genomic.fna	Salmonella_enterica	0.5213	283.982 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKZG010000004.1 Salmonella enterica strain PNUSAS364547 SAMN36652629-rid18826293.denovo.04, whole genome shotgun sequence	44102..44539	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKZG010000031.1 Salmonella enterica strain PNUSAS364547 SAMN36652629-rid18826293.guided.24, whole genome shotgun sequence	9466..9903	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKZG010000019.1 Salmonella enterica strain PNUSAS364547 SAMN36652629-rid18826293.denovo.19, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNKZG010000023.1 Salmonella enterica strain PNUSAS364547 SAMN36652629-rid18826293.denovo.26, whole genome shotgun sequence	3402..3663																																																avrA	ABNKZG010000002.1	552955..553824	99.54	870	0						
GCA_032427275.1_PDT001823235.1_genomic.fna	Salmonella_enterica	0.5214	284.136 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKZH010000001.1 Salmonella enterica strain PNUSAS364543 SAMN36652633-rid18826583.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKZH010000031.1 Salmonella enterica strain PNUSAS364543 SAMN36652633-rid18826583.guided.21, whole genome shotgun sequence	12456..12893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKZH010000018.1 Salmonella enterica strain PNUSAS364543 SAMN36652633-rid18826583.denovo.18, whole genome shotgun sequence	40547..41189	enterobacteriales	IncFII(S)	100	262 / 262	ABNKZH010000022.1 Salmonella enterica strain PNUSAS364543 SAMN36652633-rid18826583.denovo.25, whole genome shotgun sequence	3395..3656																																																avrA	ABNKZH010000002.1	552959..553828	99.54	870	0						
GCA_032427475.1_PDT001823217.1_genomic.fna	Salmonella_enterica	0.5218	185.799 KB	7	aroC_231*,dnaN_501,hemD_422,hisD_407*,purE_236,sucA_340,thrA_209*	Unknown	7:a:e,n,z15	0		1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	99.8003992015968	100	aroC_231*	dnaN	100	100	dnaN_501	hemD	100	100	hemD_422	hisD	99.8003992015968	100	hisD_407*	purE	100	100	purE_236	sucA	100	100	sucA_340	thrA	99.8003992015968	100	thrA_209*	7	a	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Denver		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNKZS010000018.1 Salmonella enterica strain PNUSAS364452 SAMN36639576-rid18826173.denovo.18, whole genome shotgun sequence	70580..70721																																																																	
GCA_032427515.1_PDT001823216.1_genomic.fna	Salmonella_enterica	0.5181	268.711 KB	6	aroC_157,dnaN_142,hemD_49,hisD_16,purE_40,sucA_35,thrA_3	505	4:l,v:1,7	13	aac(6')-Iaa,aph(6)-Id,aadA22,aph(3')-Ia,aph(6)-Id,aac(6')-Iaa,aadA22,aadA22,aph(3')-Ia,blaCTX-M-55,blaCTX-M-55,mph(A),lnu(F),lnu(F),lnu(F),mph(A),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul3,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	3	Col440I,IncHI2,IncHI2A	aroC	100	100	aroC_157	dnaN	100	100	dnaN_142	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_3	4	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Bredeney		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNKZT010000001.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.denovo.01, whole genome shotgun sequence	433369..433806	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNKZT010000032.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.denovo.33, whole genome shotgun sequence	5759..6595	Streptomycin	M28829	aadA22	100	792/792	ABNKZT010000038.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.denovo.43, whole genome shotgun sequence	944..1735	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABNKZT010000043.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.denovo.56, whole genome shotgun sequence	239..1054	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin	EF015636	aph(6)-Id	100	837/837	ABNKZT010000048.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.guided.35, whole genome shotgun sequence	392..1228	Streptomycin	M28829	aac(6')-Iaa	98.17	438/438	ABNKZT010000051.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.guided.40, whole genome shotgun sequence	268..705	Amikacin, Tobramycin	NC_003197	aadA22	99.87	792/792	ABNKZT010000054.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.guided.48, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	aadA22	100	792/792	ABNKZT010000055.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.guided.49, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABNKZT010000059.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.guided.55, whole genome shotgun sequence	163..978	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin	EF015636	blaCTX-M-55	100	876/876	ABNKZT010000031.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.denovo.31, whole genome shotgun sequence	8896..9771	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaCTX-M-55	100	876/876	ABNKZT010000058.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.guided.54, whole genome shotgun sequence	85..960	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	mph(A)	100	906/906	ABNKZT010000037.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.denovo.42, whole genome shotgun sequence	2576..3481	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNKZT010000038.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.denovo.43, whole genome shotgun sequence	1867..2688	Lincomycin	EU118119	lnu(F)	100	822/822	ABNKZT010000054.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.guided.48, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	lnu(F)	100	822/822	ABNKZT010000055.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.guided.49, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	mph(A)	100	906/906	ABNKZT010000056.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.guided.52, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.11	1214/1215	ABNKZT010000033.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.denovo.34, whole genome shotgun sequence	776..1989	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNKZT010000052.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.guided.45, whole genome shotgun sequence	922..2135	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNKZT010000031.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.denovo.31, whole genome shotgun sequence	3599..4255	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNKZT010000049.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.guided.36, whole genome shotgun sequence	4336..4992	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNKZT010000042.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.denovo.51, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNKZT010000057.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.guided.53, whole genome shotgun sequence	189..641	Rifampicin	HQ141279	sul3	100	792/792	ABNKZT010000029.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.denovo.29, whole genome shotgun sequence	13388..14179	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNKZT010000047.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.guided.32, whole genome shotgun sequence	1282..2073	Sulfamethoxazole	AJ459418	tet(A)	100	1200/1200	ABNKZT010000032.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.denovo.33, whole genome shotgun sequence	3214..4413	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNKZT010000048.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.guided.35, whole genome shotgun sequence	2574..3773	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNKZT010000042.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.denovo.51, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNKZT010000060.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.guided.58, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.86	114 / 114	ABNKZT010000039.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.denovo.44, whole genome shotgun sequence	354..467	enterobacteriales	IncHI2	100	327 / 327	ABNKZT010000026.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.denovo.26, whole genome shotgun sequence	1933..2259		enterobacteriales	IncHI2A	99.52	630 / 630	ABNKZT010000026.1 Salmonella enterica strain PNUSAS364449 SAMN36639570-rid18826163.denovo.26, whole genome shotgun sequence	20243..20872																																																				
GCA_032427525.1_PDT001823215.1_genomic.fna	Salmonella_enterica	0.521	223.093 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNKZU010000002.1 Salmonella enterica strain PNUSAS364541 SAMN36652156-rid18826513.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNKZU010000059.1 Salmonella enterica strain PNUSAS364541 SAMN36652156-rid18826513.guided.21, whole genome shotgun sequence	6257..6694	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNKZU010000016.1 Salmonella enterica strain PNUSAS364541 SAMN36652156-rid18826513.denovo.16, whole genome shotgun sequence	48425..49067	enterobacteriales	IncFII(S)	100	262 / 262	ABNKZU010000016.1 Salmonella enterica strain PNUSAS364541 SAMN36652156-rid18826513.denovo.16, whole genome shotgun sequence	64152..64413		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNKZU010000018.1 Salmonella enterica strain PNUSAS364541 SAMN36652156-rid18826513.denovo.18, whole genome shotgun sequence	66861..67002																																									avrA	ABNKZU010000005.1	143285..144153	100	869	0						
GCA_032427555.1_PDT001823212.1_genomic.fna	Salmonella_enterica	0.5203	406.91 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKZW010000001.1 Salmonella enterica strain PNUSAS364485 SAMN36652095-rid18826493.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKZW010000022.1 Salmonella enterica strain PNUSAS364485 SAMN36652095-rid18826493.guided.18, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNKZW010000017.1 Salmonella enterica strain PNUSAS364485 SAMN36652095-rid18826493.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNKZW010000018.1 Salmonella enterica strain PNUSAS364485 SAMN36652095-rid18826493.denovo.21, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.93	374 / 374	ABNKZW010000014.1 Salmonella enterica strain PNUSAS364485 SAMN36652095-rid18826493.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNKZW010000002.1	553690..554559	99.54	870	0						
GCA_032427575.1_PDT001823214.1_genomic.fna	Salmonella_enterica	0.5206	688.699 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(p14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNKZV010000001.1 Salmonella enterica strain PNUSAS364444 SAMN36639580-rid18826153.denovo.01, whole genome shotgun sequence	640952..641389	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNKZV010000024.1 Salmonella enterica strain PNUSAS364444 SAMN36639580-rid18826153.guided.17, whole genome shotgun sequence	1382..1819	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNKZV010000009.1 Salmonella enterica strain PNUSAS364444 SAMN36639580-rid18826153.denovo.09, whole genome shotgun sequence	17040..17682	enterobacteriales	IncFII(p14)	92.02	263 / 262	ABNKZV010000009.1 Salmonella enterica strain PNUSAS364444 SAMN36639580-rid18826153.denovo.09, whole genome shotgun sequence	33612..33870																																																avrA	ABNKZV010000002.1	498412..498973	99.645	563	0	avrA	ABNKZV010000002.1	498973..499231	98.842	259	1.03e-130
GCA_032427595.1_PDT001823210.1_genomic.fna	Salmonella_enterica	0.5211	478.51 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col440I,ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNKZX010000001.1 Salmonella enterica strain PNUSAS364490 SAMN36652093-rid18826483.denovo.01, whole genome shotgun sequence	774542..774979	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNKZX010000031.1 Salmonella enterica strain PNUSAS364490 SAMN36652093-rid18826483.guided.15, whole genome shotgun sequence	30268..30705	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col440I	93.81	113 / 114	ABNKZX010000025.1 Salmonella enterica strain PNUSAS364490 SAMN36652093-rid18826483.denovo.28, whole genome shotgun sequence	2528..2639	enterobacteriales	ColRNAI	90.84	131 / 130	ABNKZX010000022.1 Salmonella enterica strain PNUSAS364490 SAMN36652093-rid18826483.denovo.25, whole genome shotgun sequence	3857..3987		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNKZX010000018.1 Salmonella enterica strain PNUSAS364490 SAMN36652093-rid18826483.denovo.19, whole genome shotgun sequence	6824..7466		enterobacteriales	IncFII(S)	100	262 / 262	ABNKZX010000020.1 Salmonella enterica strain PNUSAS364490 SAMN36652093-rid18826483.denovo.22, whole genome shotgun sequence	3387..3648																																		avrA	ABNKZX010000002.1	553678..554547	99.54	870	0						
GCA_032427615.1_PDT001823208.1_genomic.fna	Salmonella_enterica	0.5232	265.098 KB	5	aroC_5,dnaN_14,hemD_21,hisD_9,purE_6,sucA_12,thrA_17	49	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNKZY010000001.1 Salmonella enterica strain PNUSAS364476 SAMN36652091-rid18826473.denovo.01, whole genome shotgun sequence	640245..640682	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNKZY010000033.1 Salmonella enterica strain PNUSAS364476 SAMN36652091-rid18826473.guided.27, whole genome shotgun sequence	11175..11612	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNKZY010000003.1	140035..140904	99.54	870	0						
GCA_032427635.1_PDT001823197.1_genomic.fna	Salmonella_enterica	0.5209	381.289 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLAA010000003.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.denovo.03, whole genome shotgun sequence	159453..159890	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLAA010000020.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.denovo.20, whole genome shotgun sequence	28247..29083	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNLAA010000020.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.denovo.20, whole genome shotgun sequence	27444..28247	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNLAA010000035.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.guided.26, whole genome shotgun sequence	3231..4067	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNLAA010000035.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.guided.26, whole genome shotgun sequence	2428..3231	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNLAA010000036.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.guided.28, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNLAA010000026.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.denovo.32, whole genome shotgun sequence	116..1261	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNLAA010000038.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.guided.31, whole genome shotgun sequence	157..1302	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABNLAA010000020.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.denovo.20, whole genome shotgun sequence	32219..33432	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNLAA010000037.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.guided.30, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNLAA010000020.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.denovo.20, whole genome shotgun sequence	26568..27383	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNLAA010000035.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.guided.26, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNLAA010000020.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.denovo.20, whole genome shotgun sequence	30344..31618	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNLAA010000035.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.guided.26, whole genome shotgun sequence	5328..6602	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABNLAA010000019.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.denovo.19, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNLAA010000016.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.denovo.16, whole genome shotgun sequence	16929..17188		enterobacteriales	IncX1	98.66	374 / 374	ABNLAA010000016.1 Salmonella enterica strain PNUSAS364483 SAMN36652105-rid18826073.denovo.16, whole genome shotgun sequence	52783..53156																																									avrA	ABNLAA010000007.1	173549..174417	99.54	870	0						
GCA_032427675.1_PDT001823196.1_genomic.fna	Salmonella_enterica	0.5219	170.01 KB	11	aroC_124,dnaN_4,hemD_283,hisD_943,purE_5,sucA_12,thrA_38	4075	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_124	dnaN	100	100	dnaN_4	hemD	100	100	hemD_283	hisD	100	100	hisD_943	purE	100	100	purE_5	sucA	100	100	sucA_12	thrA	100	100	thrA_38	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLAB010000016.1 Salmonella enterica strain PNUSAS364487 SAMN36652087-rid18826063.denovo.16, whole genome shotgun sequence	42618..43055	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNLAB010000050.1 Salmonella enterica strain PNUSAS364487 SAMN36652087-rid18826063.guided.42, whole genome shotgun sequence	738..1175	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLAB010000005.1	145002..145870	99.08	870	0						
GCA_032427695.1_PDT001823193.1_genomic.fna	Salmonella_enterica	0.5214	489.989 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	7	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,tet(A),tet(A)	1	gyrA_p.D87N	3	Col(pHAD28),Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLAD010000001.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.denovo.01, whole genome shotgun sequence	821204..821641	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLAD010000024.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.guided.22, whole genome shotgun sequence	3861..4298	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	ABNLAD010000017.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.denovo.18, whole genome shotgun sequence	7822..8682	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNLAD010000017.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.denovo.18, whole genome shotgun sequence	7822..8682	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNLAD010000017.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.denovo.18, whole genome shotgun sequence	7822..8682	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNLAD010000017.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.denovo.18, whole genome shotgun sequence	7822..8682	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNLAD010000017.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.denovo.18, whole genome shotgun sequence	7822..8682	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	ABNLAD010000022.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.guided.19, whole genome shotgun sequence	7796..8656	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNLAD010000022.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.guided.19, whole genome shotgun sequence	7796..8656	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNLAD010000022.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.guided.19, whole genome shotgun sequence	7796..8656	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNLAD010000022.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.guided.19, whole genome shotgun sequence	7796..8656	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNLAD010000022.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.guided.19, whole genome shotgun sequence	7796..8656	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	99.92	1200/1200	ABNLAD010000017.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.denovo.18, whole genome shotgun sequence	5694..6893	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNLAD010000022.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.guided.19, whole genome shotgun sequence	9585..10784	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNLAD010000017.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.denovo.18, whole genome shotgun sequence	936..1066	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNLAD010000022.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.guided.19, whole genome shotgun sequence	2756..2886		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLAD010000016.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.denovo.17, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABNLAD010000018.1 Salmonella enterica strain PNUSAS364478 SAMN36652099-rid18826033.denovo.21, whole genome shotgun sequence	3389..3650																																		avrA	ABNLAD010000002.1	553120..553989	99.54	870	0						
GCA_032427715.1_PDT001823194.1_genomic.fna	Salmonella_enterica	0.522	275.207 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLAC010000001.1 Salmonella enterica strain PNUSAS364489 SAMN36652096-rid18826043.denovo.01, whole genome shotgun sequence	380038..380475	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLAC010000037.1 Salmonella enterica strain PNUSAS364489 SAMN36652096-rid18826043.guided.29, whole genome shotgun sequence	4372..4809	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLAC010000003.1	218734..219602	99.77	870	0						
GCA_032427735.1_PDT001823191.1_genomic.fna	Salmonella_enterica	0.5213	406.452 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLAE010000001.1 Salmonella enterica strain PNUSAS364477 SAMN36652103-rid18826013.denovo.01, whole genome shotgun sequence	162458..162895	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLAE010000029.1 Salmonella enterica strain PNUSAS364477 SAMN36652103-rid18826013.guided.25, whole genome shotgun sequence	3910..4347	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLAE010000020.1 Salmonella enterica strain PNUSAS364477 SAMN36652103-rid18826013.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNLAE010000022.1 Salmonella enterica strain PNUSAS364477 SAMN36652103-rid18826013.denovo.24, whole genome shotgun sequence	3402..3663																																																avrA	ABNLAE010000002.1	585353..586222	99.54	870	0						
GCA_032427755.1_PDT001823184.1_genomic.fna	Salmonella_enterica	0.5211	406.143 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLAI010000001.1 Salmonella enterica strain PNUSAS364486 SAMN36652090-rid18825943.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLAI010000026.1 Salmonella enterica strain PNUSAS364486 SAMN36652090-rid18825943.guided.18, whole genome shotgun sequence	16201..16638	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLAI010000017.1 Salmonella enterica strain PNUSAS364486 SAMN36652090-rid18825943.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNLAI010000019.1 Salmonella enterica strain PNUSAS364486 SAMN36652090-rid18825943.denovo.21, whole genome shotgun sequence	3377..3638																																																avrA	ABNLAI010000002.1	553636..554505	99.54	870	0						
GCA_032427775.1_PDT001823190.1_genomic.fna	Salmonella_enterica	0.5227	443.282 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLAG010000001.1 Salmonella enterica strain PNUSAS364488 SAMN36652100-rid18826003.denovo.01, whole genome shotgun sequence	873682..874119	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLAG010000028.1 Salmonella enterica strain PNUSAS364488 SAMN36652100-rid18826003.guided.18, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLAG010000002.1	183141..184010	98.966	870	0						
GCA_032427795.1_PDT001823188.1_genomic.fna	Salmonella_enterica	0.5169	353.549 KB	6	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNLAF010000003.1 Salmonella enterica strain PNUSAS364474 SAMN36652102-rid18825983.denovo.03, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNLAF010000052.1 Salmonella enterica strain PNUSAS364474 SAMN36652102-rid18825983.guided.37, whole genome shotgun sequence	4407..4844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNLAF010000009.1 Salmonella enterica strain PNUSAS364474 SAMN36652102-rid18825983.denovo.09, whole genome shotgun sequence	183649..184291	enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABNLAF010000031.1 Salmonella enterica strain PNUSAS364474 SAMN36652102-rid18825983.denovo.31, whole genome shotgun sequence	8801..9393																																																											
GCA_032427815.1_PDT001823187.1_genomic.fna	Salmonella_enterica	0.5212	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncFII(pHN7A8)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLAH010000001.1 Salmonella enterica strain PNUSAS364472 SAMN36652094-rid18825973.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLAH010000030.1 Salmonella enterica strain PNUSAS364472 SAMN36652094-rid18825973.guided.23, whole genome shotgun sequence	7849..8286	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLAH010000021.1 Salmonella enterica strain PNUSAS364472 SAMN36652094-rid18825973.denovo.22, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNLAH010000022.1 Salmonella enterica strain PNUSAS364472 SAMN36652094-rid18825973.denovo.24, whole genome shotgun sequence	3382..3643		enterobacteriales	IncFII(pHN7A8)	96.92	260 / 260	ABNLAH010000016.1 Salmonella enterica strain PNUSAS364472 SAMN36652094-rid18825973.denovo.16, whole genome shotgun sequence	40305..40564																																									avrA	ABNLAH010000002.1	553642..554511	99.54	870	0						
GCA_032427835.1_PDT001823183.1_genomic.fna	Salmonella_enterica	0.521	406.402 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLAJ010000001.1 Salmonella enterica strain PNUSAS364484 SAMN36652104-rid18825933.denovo.01, whole genome shotgun sequence	162586..163023	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLAJ010000028.1 Salmonella enterica strain PNUSAS364484 SAMN36652104-rid18825933.guided.23, whole genome shotgun sequence	1322..1759	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLAJ010000019.1 Salmonella enterica strain PNUSAS364484 SAMN36652104-rid18825933.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNLAJ010000016.1 Salmonella enterica strain PNUSAS364484 SAMN36652104-rid18825933.denovo.17, whole genome shotgun sequence	37108..37369																																																avrA	ABNLAJ010000002.1	585474..586343	99.54	870	0						
GCA_032427855.1_PDT001823178.1_genomic.fna	Salmonella_enterica	0.5223	360.438 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNLAL010000001.1 Salmonella enterica strain PNUSAS364439 SAMN36639583-rid18825883.denovo.01, whole genome shotgun sequence	644052..644489	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNLAL010000029.1 Salmonella enterica strain PNUSAS364439 SAMN36639583-rid18825883.guided.22, whole genome shotgun sequence	7123..7560	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLAL010000002.1	94222..95091	98.966	870	0						
GCA_032427875.1_PDT001823176.1_genomic.fna	Salmonella_enterica	0.5214	229.313 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLAM010000001.1 Salmonella enterica strain PNUSAS364473 SAMN36652088-rid18825863.denovo.01, whole genome shotgun sequence	482675..483112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLAM010000040.1 Salmonella enterica strain PNUSAS364473 SAMN36652088-rid18825863.guided.23, whole genome shotgun sequence	40111..40548	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLAM010000026.1 Salmonella enterica strain PNUSAS364473 SAMN36652088-rid18825863.denovo.27, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNLAM010000026.1 Salmonella enterica strain PNUSAS364473 SAMN36652088-rid18825863.denovo.27, whole genome shotgun sequence	9325..9586																																																avrA	ABNLAM010000002.1	210804..211673	99.885	870	0						
GCA_032427895.1_PDT001823182.1_genomic.fna	Salmonella_enterica	0.5212	433.187 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLAK010000001.1 Salmonella enterica strain PNUSAS364482 SAMN36652089-rid18825923.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLAK010000026.1 Salmonella enterica strain PNUSAS364482 SAMN36652089-rid18825923.guided.19, whole genome shotgun sequence	31317..31754	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLAK010000018.1 Salmonella enterica strain PNUSAS364482 SAMN36652089-rid18825923.denovo.21, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNLAK010000016.1 Salmonella enterica strain PNUSAS364482 SAMN36652089-rid18825923.denovo.16, whole genome shotgun sequence	37108..37369																																																avrA	ABNLAK010000002.1	553636..554505	99.54	870	0						
GCA_032427915.1_PDT001823174.1_genomic.fna	Salmonella_enterica	0.5226	443.198 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLAN010000001.1 Salmonella enterica strain PNUSAS364475 SAMN36652101-rid18825843.denovo.01, whole genome shotgun sequence	838577..839014	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLAN010000032.1 Salmonella enterica strain PNUSAS364475 SAMN36652101-rid18825843.guided.18, whole genome shotgun sequence	1409..1846	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLAN010000003.1	183141..184010	98.851	870	0						
GCA_032427935.1_PDT001823175.1_genomic.fna	Salmonella_enterica	0.5208	433.115 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLAO010000001.1 Salmonella enterica strain PNUSAS364479 SAMN36652107-rid18825853.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLAO010000027.1 Salmonella enterica strain PNUSAS364479 SAMN36652107-rid18825853.guided.20, whole genome shotgun sequence	1011..1448	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLAO010000017.1 Salmonella enterica strain PNUSAS364479 SAMN36652107-rid18825853.denovo.18, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNLAO010000015.1 Salmonella enterica strain PNUSAS364479 SAMN36652107-rid18825853.denovo.15, whole genome shotgun sequence	3859..4120																																																avrA	ABNLAO010000002.1	553181..554050	99.54	870	0						
GCA_032427955.1_PDT001823169.1_genomic.fna	Salmonella_enterica	0.5214	406.317 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLAQ010000001.1 Salmonella enterica strain PNUSAS364480 SAMN36652106-rid18825793.denovo.01, whole genome shotgun sequence	774365..774802	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLAQ010000023.1 Salmonella enterica strain PNUSAS364480 SAMN36652106-rid18825793.guided.16, whole genome shotgun sequence	18944..19381	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLAQ010000017.1 Salmonella enterica strain PNUSAS364480 SAMN36652106-rid18825793.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNLAQ010000018.1 Salmonella enterica strain PNUSAS364480 SAMN36652106-rid18825793.denovo.21, whole genome shotgun sequence	3403..3664																																																avrA	ABNLAQ010000002.1	553305..554174	99.54	870	0						
GCA_032427975.1_PDT001823145.1_genomic.fna	Salmonella_enterica	0.522	347.446 KB	6	aroC_10,dnaN_1263,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	9720	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_1263	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLAR010000003.1 Salmonella enterica strain PNUSAS364437 SAMN36639558-rid18825553.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLAR010000040.1 Salmonella enterica strain PNUSAS364437 SAMN36639558-rid18825553.guided.31, whole genome shotgun sequence	1063..1500	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLAR010000016.1 Salmonella enterica strain PNUSAS364437 SAMN36639558-rid18825553.denovo.16, whole genome shotgun sequence	44752..45394	enterobacteriales	IncFII(S)	100	262 / 262	ABNLAR010000016.1 Salmonella enterica strain PNUSAS364437 SAMN36639558-rid18825553.denovo.16, whole genome shotgun sequence	29405..29666																																																avrA	ABNLAR010000005.1	175543..176411	100	869	0						
GCA_032427995.1_PDT001823172.1_genomic.fna	Salmonella_enterica	0.5213	439.379 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLAP010000001.1 Salmonella enterica strain PNUSAS364481 SAMN36652092-rid18825823.denovo.01, whole genome shotgun sequence	774554..774991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLAP010000026.1 Salmonella enterica strain PNUSAS364481 SAMN36652092-rid18825823.guided.22, whole genome shotgun sequence	929..1366	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLAP010000017.1 Salmonella enterica strain PNUSAS364481 SAMN36652092-rid18825823.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNLAP010000019.1 Salmonella enterica strain PNUSAS364481 SAMN36652092-rid18825823.denovo.21, whole genome shotgun sequence	3386..3647																																																avrA	ABNLAP010000002.1	585347..586216	99.54	870	0						
GCA_032428055.1_PDT001823118.1_genomic.fna	Salmonella_enterica	0.5201	740.221 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNLAW010000001.1 Salmonella enterica strain PNUSAS364433 SAMN36639555-rid18825483.denovo.01, whole genome shotgun sequence	1264019..1264456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNLAW010000027.1 Salmonella enterica strain PNUSAS364433 SAMN36639555-rid18825483.guided.18, whole genome shotgun sequence	5685..6122	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLAW010000003.1	554271..555139	99.425	870	0						
GCA_032428095.1_PDT001823114.1_genomic.fna	Salmonella_enterica	0.5223	762.445 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNLAV010000001.1 Salmonella enterica strain PNUSAS364440 SAMN36639585-rid18825443.denovo.01, whole genome shotgun sequence	481953..482390	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNLAV010000020.1 Salmonella enterica strain PNUSAS364440 SAMN36639585-rid18825443.guided.12, whole genome shotgun sequence	16549..16986	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	97.37	152 / 154	ABNLAV010000012.1 Salmonella enterica strain PNUSAS364440 SAMN36639585-rid18825443.denovo.15, whole genome shotgun sequence	967..1118																																																						avrA	ABNLAV010000004.1	553688..554557	99.655	870	0						
GCA_032428115.1_PDT001823112.1_genomic.fna	Salmonella_enterica	0.5208	282.876 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_70,sucA_9,thrA_2	213	4:i:1,2	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,floR,floR,floR,sul2,sul2,tet(A),tet(A)	0		2	Col440I,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_70	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLAX010000001.1 Salmonella enterica strain PNUSAS364450 SAMN36639573-rid18825423.denovo.01, whole genome shotgun sequence	482762..483199	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLAX010000027.1 Salmonella enterica strain PNUSAS364450 SAMN36639573-rid18825423.denovo.27, whole genome shotgun sequence	25227..26063	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNLAX010000027.1 Salmonella enterica strain PNUSAS364450 SAMN36639573-rid18825423.denovo.27, whole genome shotgun sequence	24424..25227	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNLAX010000040.1 Salmonella enterica strain PNUSAS364450 SAMN36639573-rid18825423.guided.28, whole genome shotgun sequence	19734..20570	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNLAX010000040.1 Salmonella enterica strain PNUSAS364450 SAMN36639573-rid18825423.guided.28, whole genome shotgun sequence	18931..19734	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNLAX010000041.1 Salmonella enterica strain PNUSAS364450 SAMN36639573-rid18825423.guided.30, whole genome shotgun sequence	9658..10095	Amikacin, Tobramycin	NC_003197	floR	98.27	1214/1215	ABNLAX010000027.1 Salmonella enterica strain PNUSAS364450 SAMN36639573-rid18825423.denovo.27, whole genome shotgun sequence	29199..30412	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNLAX010000043.1 Salmonella enterica strain PNUSAS364450 SAMN36639573-rid18825423.guided.33, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNLAX010000044.1 Salmonella enterica strain PNUSAS364450 SAMN36639573-rid18825423.guided.34, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNLAX010000027.1 Salmonella enterica strain PNUSAS364450 SAMN36639573-rid18825423.denovo.27, whole genome shotgun sequence	23548..24363	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNLAX010000040.1 Salmonella enterica strain PNUSAS364450 SAMN36639573-rid18825423.guided.28, whole genome shotgun sequence	18055..18870	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNLAX010000027.1 Salmonella enterica strain PNUSAS364450 SAMN36639573-rid18825423.denovo.27, whole genome shotgun sequence	27324..28598	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNLAX010000040.1 Salmonella enterica strain PNUSAS364450 SAMN36639573-rid18825423.guided.28, whole genome shotgun sequence	21831..23105	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																	enterobacteriales	Col440I	92.04	113 / 114	ABNLAX010000030.1 Salmonella enterica strain PNUSAS364450 SAMN36639573-rid18825423.denovo.35, whole genome shotgun sequence	335..447	enterobacteriales	IncC	100	417 / 417	ABNLAX010000025.1 Salmonella enterica strain PNUSAS364450 SAMN36639573-rid18825423.denovo.25, whole genome shotgun sequence	17493..17909																																																avrA	ABNLAX010000008.1	94133..95002	99.885	870	0						
GCA_032428135.1_PDT001823107.1_genomic.fna	Salmonella_enterica	0.5213	729.7 KB	2	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLAZ010000001.1 Salmonella enterica strain PNUSAS364453 SAMN36639569-rid18825373.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLAZ010000021.1 Salmonella enterica strain PNUSAS364453 SAMN36639569-rid18825373.guided.12, whole genome shotgun sequence	29086..29523	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLAZ010000011.1 Salmonella enterica strain PNUSAS364453 SAMN36639569-rid18825373.denovo.11, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNLAZ010000014.1 Salmonella enterica strain PNUSAS364453 SAMN36639569-rid18825373.denovo.17, whole genome shotgun sequence	3446..3707																																																avrA	ABNLAZ010000002.1	553635..554504	99.54	870	0						
GCA_032428155.1_PDT001823104.1_genomic.fna	Salmonella_enterica	0.5147	371.681 KB	5	aroC_33,dnaN_26,hemD_30,hisD_144,purE_464,sucA_87,thrA_134	1848	61:z52:z53	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_144	purE	100	100	purE_464	sucA	100	100	sucA_87	thrA	100	100	thrA_134	61	z52	z53	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:z52:z53		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLBA010000003.1 Salmonella enterica strain PNUSAS364447 SAMN36639575-rid18825343.denovo.03, whole genome shotgun sequence	98304..98741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNLBA010000038.1 Salmonella enterica strain PNUSAS364447 SAMN36639575-rid18825343.guided.29, whole genome shotgun sequence	2552..2989	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLBA010000001.1	154649..155518	96.437	870	0						
GCA_032428195.1_PDT001823109.1_genomic.fna	Salmonella_enterica	0.522	273.337 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLAY010000003.1 Salmonella enterica strain PNUSAS364434 SAMN36639572-rid18825393.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLAY010000040.1 Salmonella enterica strain PNUSAS364434 SAMN36639572-rid18825393.guided.29, whole genome shotgun sequence	12466..12903	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLAY010000016.1 Salmonella enterica strain PNUSAS364434 SAMN36639572-rid18825393.denovo.16, whole genome shotgun sequence	48438..49080	enterobacteriales	IncFII(S)	100	262 / 262	ABNLAY010000016.1 Salmonella enterica strain PNUSAS364434 SAMN36639572-rid18825393.denovo.16, whole genome shotgun sequence	64165..64426																																																avrA	ABNLAY010000007.1	94134..95002	100	869	0						
GCA_032428235.1_PDT001823099.1_genomic.fna	Salmonella_enterica	0.5199	404.246 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLBD010000001.1 Salmonella enterica strain PNUSAS364455 SAMN36639581-rid18825293.denovo.01, whole genome shotgun sequence	486131..486568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLBD010000035.1 Salmonella enterica strain PNUSAS364455 SAMN36639581-rid18825293.guided.26, whole genome shotgun sequence	5333..5770	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNLBD010000004.1 Salmonella enterica strain PNUSAS364455 SAMN36639581-rid18825293.denovo.04, whole genome shotgun sequence	388760..389182	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNLBD010000036.1 Salmonella enterica strain PNUSAS364455 SAMN36639581-rid18825293.guided.28, whole genome shotgun sequence	4099..4521	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNLBD010000015.1 Salmonella enterica strain PNUSAS364455 SAMN36639581-rid18825293.denovo.15, whole genome shotgun sequence	70166..70307																																																						avrA	ABNLBD010000002.1	122297..123166	99.195	870	0						
GCA_032428255.1_PDT001823098.1_genomic.fna	Salmonella_enterica	0.5214	496.515 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI(Gamma)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLBC010000001.1 Salmonella enterica strain PNUSAS364432 SAMN36639578-rid18825283.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLBC010000033.1 Salmonella enterica strain PNUSAS364432 SAMN36639578-rid18825283.guided.20, whole genome shotgun sequence	3781..4218	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI(Gamma)	97.81	137 / 141	ABNLBC010000011.1 Salmonella enterica strain PNUSAS364432 SAMN36639578-rid18825283.denovo.11, whole genome shotgun sequence	79448..79584																																																						avrA	ABNLBC010000002.1	93999..94868	98.966	870	0						
GCA_032428275.1_PDT001823097.1_genomic.fna	Salmonella_enterica	0.523	444.298 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLBE010000001.1 Salmonella enterica strain PNUSAS364436 SAMN36639562-rid18825273.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNLBE010000028.1 Salmonella enterica strain PNUSAS364436 SAMN36639562-rid18825273.guided.20, whole genome shotgun sequence	5114..5551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLBE010000003.1	149828..150697	99.655	870	0						
GCA_032428295.1_PDT001823085.1_genomic.fna	Salmonella_enterica	0.5213	489.907 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLBG010000001.1 Salmonella enterica strain PNUSAS364445 SAMN36639571-rid18825153.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLBG010000024.1 Salmonella enterica strain PNUSAS364445 SAMN36639571-rid18825153.guided.20, whole genome shotgun sequence	1782..2219	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLBG010000013.1 Salmonella enterica strain PNUSAS364445 SAMN36639571-rid18825153.denovo.13, whole genome shotgun sequence	9914..10556	enterobacteriales	IncFII(S)	100	262 / 262	ABNLBG010000013.1 Salmonella enterica strain PNUSAS364445 SAMN36639571-rid18825153.denovo.13, whole genome shotgun sequence	54548..54809																																																avrA	ABNLBG010000002.1	584148..585017	99.54	870	0						
GCA_032428315.1_PDT001823084.1_genomic.fna	Salmonella_enterica	0.5213	465.59 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLBI010000001.1 Salmonella enterica strain PNUSAS364448 SAMN36639574-rid18825143.denovo.01, whole genome shotgun sequence	560095..560532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLBI010000031.1 Salmonella enterica strain PNUSAS364448 SAMN36639574-rid18825143.guided.24, whole genome shotgun sequence	122..559	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLBI010000010.1	93876..94744	99.195	870	0						
GCA_032428355.1_PDT001823094.1_genomic.fna	Salmonella_enterica	0.5215	673.095 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLBF010000001.1 Salmonella enterica strain PNUSAS364443 SAMN36639565-rid18825243.denovo.01, whole genome shotgun sequence	643804..644241	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLBF010000021.1 Salmonella enterica strain PNUSAS364443 SAMN36639565-rid18825243.guided.14, whole genome shotgun sequence	981..1418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNLBF010000022.1 Salmonella enterica strain PNUSAS364443 SAMN36639565-rid18825243.guided.15, whole genome shotgun sequence	981..1418	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032428375.1_PDT001822813.1_genomic.fna	Salmonella_enterica	0.5213	363.943 KB	6	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLBO010000002.1 Salmonella enterica strain PNUSAS364405 SAMN36637453-rid18825083.denovo.02, whole genome shotgun sequence	380331..380768	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLBO010000042.1 Salmonella enterica strain PNUSAS364405 SAMN36637453-rid18825083.guided.28, whole genome shotgun sequence	7014..7451	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032428395.1_PDT001822814.1_genomic.fna	Salmonella_enterica	0.5213	478.612 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLBN010000001.1 Salmonella enterica strain PNUSAS364401 SAMN36637459-rid18825093.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLBN010000027.1 Salmonella enterica strain PNUSAS364401 SAMN36637459-rid18825093.guided.21, whole genome shotgun sequence	1305..1742	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLBN010000012.1 Salmonella enterica strain PNUSAS364401 SAMN36637459-rid18825093.denovo.12, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	ABNLBN010000016.1 Salmonella enterica strain PNUSAS364401 SAMN36637459-rid18825093.denovo.17, whole genome shotgun sequence	3372..3633																																																avrA	ABNLBN010000002.1	585485..586354	99.54	870	0						
GCA_032428595.1_PDT001822809.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLBQ010000001.1 Salmonella enterica strain PNUSAS364402 SAMN36637456-rid18825043.denovo.01, whole genome shotgun sequence	498820..499257	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLBQ010000025.1 Salmonella enterica strain PNUSAS364402 SAMN36637456-rid18825043.guided.23, whole genome shotgun sequence	1159..1596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLBQ010000014.1 Salmonella enterica strain PNUSAS364402 SAMN36637456-rid18825043.denovo.14, whole genome shotgun sequence	40545..41187	enterobacteriales	IncFII(S)	100	262 / 262	ABNLBQ010000017.1 Salmonella enterica strain PNUSAS364402 SAMN36637456-rid18825043.denovo.17, whole genome shotgun sequence	3402..3663																																																avrA	ABNLBQ010000002.1	553636..554505	99.54	870	0						
GCA_032428815.1_PDT001822784.1_genomic.fna	Salmonella_enterica	0.521	192.12 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_150,thrA_22	464	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_150	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLCH010000002.1 Salmonella enterica strain PNUSAS364399 SAMN36637461-rid18824793.denovo.02, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNLCH010000082.1 Salmonella enterica strain PNUSAS364399 SAMN36637461-rid18824793.guided.65, whole genome shotgun sequence	220..657	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNLCH010000025.1 Salmonella enterica strain PNUSAS364399 SAMN36637461-rid18824793.denovo.25, whole genome shotgun sequence	30472..31114																																																																	
GCA_032428855.1_PDT001822785.1_genomic.fna	Salmonella_enterica	0.5215	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLCG010000001.1 Salmonella enterica strain PNUSAS364407 SAMN36637457-rid18824803.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLCG010000026.1 Salmonella enterica strain PNUSAS364407 SAMN36637457-rid18824803.guided.17, whole genome shotgun sequence	12480..12917	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLCG010000013.1 Salmonella enterica strain PNUSAS364407 SAMN36637457-rid18824803.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNLCG010000013.1 Salmonella enterica strain PNUSAS364407 SAMN36637457-rid18824803.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNLCG010000002.1	553432..554301	99.54	870	0						
GCA_032428875.1_PDT001822783.1_genomic.fna	Salmonella_enterica	0.5212	477.585 KB	4	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLCI010000001.1 Salmonella enterica strain PNUSAS364400 SAMN36637460-rid18824783.denovo.01, whole genome shotgun sequence	90824..91261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLCI010000031.1 Salmonella enterica strain PNUSAS364400 SAMN36637460-rid18824783.guided.21, whole genome shotgun sequence	96..533	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLCI010000013.1 Salmonella enterica strain PNUSAS364400 SAMN36637460-rid18824783.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNLCI010000013.1 Salmonella enterica strain PNUSAS364400 SAMN36637460-rid18824783.denovo.13, whole genome shotgun sequence	55606..55867																																																avrA	ABNLCI010000002.1	506648..507517	99.54	870	0						
GCA_032428905.1_PDT001822781.1_genomic.fna	Salmonella_enterica	0.5221	714.02 KB	3	aroC_11,dnaN_10,hemD_25,hisD_42,purE_337,sucA_13,thrA_4	1954	4:e,h:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_42	purE	100	100	purE_337	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLCK010000001.1 Salmonella enterica strain PNUSAS364404 SAMN36637454-rid18824763.denovo.01, whole genome shotgun sequence	643201..643638	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNLCK010000020.1 Salmonella enterica strain PNUSAS364404 SAMN36637454-rid18824763.guided.16, whole genome shotgun sequence	1753..2190	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	ABNLCK010000016.1 Salmonella enterica strain PNUSAS364404 SAMN36637454-rid18824763.denovo.18, whole genome shotgun sequence	192..384																																																						avrA	ABNLCK010000004.1	433910..434779	99.54	870	0						
GCA_032428935.1_PDT001822779.1_genomic.fna	Salmonella_enterica	0.5208	262.018 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLCM010000001.1 Salmonella enterica strain PNUSAS364406 SAMN36637458-rid18824743.denovo.01, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLCM010000046.1 Salmonella enterica strain PNUSAS364406 SAMN36637458-rid18824743.guided.30, whole genome shotgun sequence	5733..6170	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNLCM010000020.1 Salmonella enterica strain PNUSAS364406 SAMN36637458-rid18824743.denovo.20, whole genome shotgun sequence	34958..35491																																																						avrA	ABNLCM010000009.1	192744..193613	99.655	870	0						
GCA_032429335.1_PDT001822757.1_genomic.fna	Salmonella_enterica	0.5222	45.2 KB	32	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNLDF010000059.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313576 SAMN36638865-rid18824523.denovo.060, whole genome shotgun sequence	11318..11755	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNLDF010000216.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313576 SAMN36638865-rid18824523.guided.059, whole genome shotgun sequence	15469..15906	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNLDF010000160.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313576 SAMN36638865-rid18824523.denovo.163, whole genome shotgun sequence	2546..2676	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNLDF010000179.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313576 SAMN36638865-rid18824523.denovo.182, whole genome shotgun sequence	543..673																																																avrA	ABNLDF010000036.1	39350..40219	99.54	870	0						
GCA_032429655.1_PDT001822737.1_genomic.fna	Salmonella_enterica	0.5207	477.517 KB	4	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLDU010000001.1 Salmonella enterica strain 23MDFML005629E SAMN36521214-rid18824323.denovo.01, whole genome shotgun sequence	90824..91261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLDU010000028.1 Salmonella enterica strain 23MDFML005629E SAMN36521214-rid18824323.guided.12, whole genome shotgun sequence	44290..44727	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLDU010000013.1 Salmonella enterica strain 23MDFML005629E SAMN36521214-rid18824323.denovo.14, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNLDU010000013.1 Salmonella enterica strain 23MDFML005629E SAMN36521214-rid18824323.denovo.14, whole genome shotgun sequence	55657..55918																																																avrA	ABNLDU010000002.1	506624..507493	99.54	870	0						
GCA_032429675.1_PDT001822734.1_genomic.fna	Salmonella_enterica	0.5212	477.517 KB	4	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLDX010000001.1 Salmonella enterica strain 23MDFML005619C SAMN36521210-rid18824293.denovo.01, whole genome shotgun sequence	773827..774264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLDX010000028.1 Salmonella enterica strain 23MDFML005619C SAMN36521210-rid18824293.guided.15, whole genome shotgun sequence	24484..24921	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLDX010000012.1 Salmonella enterica strain 23MDFML005619C SAMN36521210-rid18824293.denovo.12, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	ABNLDX010000012.1 Salmonella enterica strain 23MDFML005619C SAMN36521210-rid18824293.denovo.12, whole genome shotgun sequence	55613..55874																																																avrA	ABNLDX010000002.1	506624..507493	99.54	870	0						
GCA_032429695.1_PDT001822736.1_genomic.fna	Salmonella_enterica	0.5212	406.452 KB	5	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLDV010000001.1 Salmonella enterica strain 23MDFML005608G SAMN36521208-rid18824313.denovo.01, whole genome shotgun sequence	90824..91261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLDV010000031.1 Salmonella enterica strain 23MDFML005608G SAMN36521208-rid18824313.guided.21, whole genome shotgun sequence	8015..8452	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLDV010000015.1 Salmonella enterica strain 23MDFML005608G SAMN36521208-rid18824313.denovo.15, whole genome shotgun sequence	18125..18767	enterobacteriales	IncFII(S)	100	262 / 262	ABNLDV010000015.1 Salmonella enterica strain 23MDFML005608G SAMN36521208-rid18824313.denovo.15, whole genome shotgun sequence	3425..3686																																																avrA	ABNLDV010000002.1	506624..507493	99.54	870	0						
GCA_032429715.1_PDT001822735.1_genomic.fna	Salmonella_enterica	0.5211	477.517 KB	4	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLDW010000001.1 Salmonella enterica strain 23MDFML005608H SAMN36521209-rid18824303.denovo.01, whole genome shotgun sequence	90824..91261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLDW010000030.1 Salmonella enterica strain 23MDFML005608H SAMN36521209-rid18824303.guided.18, whole genome shotgun sequence	11579..12016	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLDW010000013.1 Salmonella enterica strain 23MDFML005608H SAMN36521209-rid18824303.denovo.13, whole genome shotgun sequence	18129..18771	enterobacteriales	IncFII(S)	100	262 / 262	ABNLDW010000013.1 Salmonella enterica strain 23MDFML005608H SAMN36521209-rid18824303.denovo.13, whole genome shotgun sequence	3429..3690																																																avrA	ABNLDW010000002.1	506624..507493	99.54	870	0						
GCA_032429735.1_PDT001822732.1_genomic.fna	Salmonella_enterica	0.5213	477.517 KB	4	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLDY010000001.1 Salmonella enterica strain 23MDFML005619E SAMN36521212-rid18824273.denovo.01, whole genome shotgun sequence	90824..91261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLDY010000032.1 Salmonella enterica strain 23MDFML005619E SAMN36521212-rid18824273.guided.20, whole genome shotgun sequence	4936..5373	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLDY010000013.1 Salmonella enterica strain 23MDFML005619E SAMN36521212-rid18824273.denovo.13, whole genome shotgun sequence	18125..18767	enterobacteriales	IncFII(S)	100	262 / 262	ABNLDY010000013.1 Salmonella enterica strain 23MDFML005619E SAMN36521212-rid18824273.denovo.13, whole genome shotgun sequence	3425..3686																																																avrA	ABNLDY010000002.1	506624..507493	99.54	870	0						
GCA_032429755.1_PDT001822733.1_genomic.fna	Salmonella_enterica	0.5213	443.139 KB	5	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLDZ010000002.1 Salmonella enterica strain 23MDFML005619D SAMN36521211-rid18824283.denovo.02, whole genome shotgun sequence	292619..293056	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLDZ010000029.1 Salmonella enterica strain 23MDFML005619D SAMN36521211-rid18824283.guided.19, whole genome shotgun sequence	13216..13653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLDZ010000014.1 Salmonella enterica strain 23MDFML005619D SAMN36521211-rid18824283.denovo.14, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	ABNLDZ010000014.1 Salmonella enterica strain 23MDFML005619D SAMN36521211-rid18824283.denovo.14, whole genome shotgun sequence	51845..52106																																																avrA	ABNLDZ010000001.1	507548..508417	99.54	870	0						
GCA_032429775.1_PDT001822730.1_genomic.fna	Salmonella_enterica	0.5213	477.517 KB	4	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLEB010000001.1 Salmonella enterica strain 23MDFML005608B SAMN36521206-rid18824253.denovo.01, whole genome shotgun sequence	90824..91261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLEB010000026.1 Salmonella enterica strain 23MDFML005608B SAMN36521206-rid18824253.guided.18, whole genome shotgun sequence	4441..4878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLEB010000013.1 Salmonella enterica strain 23MDFML005608B SAMN36521206-rid18824253.denovo.13, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABNLEB010000013.1 Salmonella enterica strain 23MDFML005608B SAMN36521206-rid18824253.denovo.13, whole genome shotgun sequence	55647..55908																																																avrA	ABNLEB010000002.1	507548..508417	99.54	870	0						
GCA_032429795.1_PDT001822731.1_genomic.fna	Salmonella_enterica	0.521	477.517 KB	4	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLEA010000001.1 Salmonella enterica strain 23MDFML005629C SAMN36521213-rid18824263.denovo.01, whole genome shotgun sequence	90824..91261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLEA010000030.1 Salmonella enterica strain 23MDFML005629C SAMN36521213-rid18824263.guided.14, whole genome shotgun sequence	44290..44727	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLEA010000013.1 Salmonella enterica strain 23MDFML005629C SAMN36521213-rid18824263.denovo.15, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	ABNLEA010000013.1 Salmonella enterica strain 23MDFML005629C SAMN36521213-rid18824263.denovo.15, whole genome shotgun sequence	51845..52106																																																avrA	ABNLEA010000002.1	506624..507493	99.54	870	0						
GCA_032429815.1_PDT001822729.1_genomic.fna	Salmonella_enterica	0.5213	477.517 KB	4	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLEC010000001.1 Salmonella enterica strain 23MDFML005608F SAMN36521207-rid18824243.denovo.01, whole genome shotgun sequence	90824..91261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLEC010000030.1 Salmonella enterica strain 23MDFML005608F SAMN36521207-rid18824243.guided.19, whole genome shotgun sequence	12606..13043	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLEC010000013.1 Salmonella enterica strain 23MDFML005608F SAMN36521207-rid18824243.denovo.13, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABNLEC010000013.1 Salmonella enterica strain 23MDFML005608F SAMN36521207-rid18824243.denovo.13, whole genome shotgun sequence	55647..55908																																																avrA	ABNLEC010000002.1	506624..507493	99.54	870	0						
GCA_032429835.1_PDT001822712.1_genomic.fna	Salmonella_enterica	0.5205	402.047 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncI2(Delta)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNLEE010000001.1 Salmonella enterica strain PNUSAS364304 SAMN36615877-rid18824133.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNLEE010000035.1 Salmonella enterica strain PNUSAS364304 SAMN36615877-rid18824133.guided.23, whole genome shotgun sequence	1447..1884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNLEE010000022.1 Salmonella enterica strain PNUSAS364304 SAMN36615877-rid18824133.denovo.25, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNLEE010000024.1 Salmonella enterica strain PNUSAS364304 SAMN36615877-rid18824133.denovo.27, whole genome shotgun sequence	2528..2639		enterobacteriales	IncI2(Delta)	98.42	316 / 316	ABNLEE010000015.1 Salmonella enterica strain PNUSAS364304 SAMN36615877-rid18824133.denovo.15, whole genome shotgun sequence	29589..29904																																									avrA	ABNLEE010000008.1	174277..175145	99.425	870	0						
GCA_032429855.1_PDT001822728.1_genomic.fna	Salmonella_enterica	0.5212	477.517 KB	4	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLED010000001.1 Salmonella enterica strain 23MDFML005629F SAMN36521215-rid18824233.denovo.01, whole genome shotgun sequence	90824..91261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLED010000031.1 Salmonella enterica strain 23MDFML005629F SAMN36521215-rid18824233.guided.17, whole genome shotgun sequence	15091..15528	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLED010000013.1 Salmonella enterica strain 23MDFML005629F SAMN36521215-rid18824233.denovo.13, whole genome shotgun sequence	18125..18767	enterobacteriales	IncFII(S)	100	262 / 262	ABNLED010000013.1 Salmonella enterica strain 23MDFML005629F SAMN36521215-rid18824233.denovo.13, whole genome shotgun sequence	3425..3686																																																avrA	ABNLED010000002.1	506624..507493	99.54	870	0						
GCA_032429875.1_PDT001822711.1_genomic.fna	Salmonella_enterica	0.5206	430.778 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLEF010000001.1 Salmonella enterica strain PNUSAS364301 SAMN36615880-rid18824123.denovo.01, whole genome shotgun sequence	628443..628880	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLEF010000022.1 Salmonella enterica strain PNUSAS364301 SAMN36615880-rid18824123.guided.18, whole genome shotgun sequence	2594..3031	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLEF010000011.1	140193..141061	99.195	870	0						
GCA_032429895.1_PDT001822707.1_genomic.fna	Salmonella_enterica	0.521	707.806 KB	2	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLEG010000001.1 Salmonella enterica strain PNUSAS364319 SAMN36615863-rid18824083.denovo.01, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLEG010000020.1 Salmonella enterica strain PNUSAS364319 SAMN36615863-rid18824083.guided.12, whole genome shotgun sequence	8981..9418	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032429915.1_PDT001822709.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLEH010000001.1 Salmonella enterica strain PNUSAS364321 SAMN36615849-rid18824103.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLEH010000020.1 Salmonella enterica strain PNUSAS364321 SAMN36615849-rid18824103.guided.11, whole genome shotgun sequence	28130..28567	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLEH010000011.1 Salmonella enterica strain PNUSAS364321 SAMN36615849-rid18824103.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNLEH010000014.1 Salmonella enterica strain PNUSAS364321 SAMN36615849-rid18824103.denovo.17, whole genome shotgun sequence	3402..3663																																																avrA	ABNLEH010000002.1	553636..554505	99.54	870	0						
GCA_032429935.1_PDT001822704.1_genomic.fna	Salmonella_enterica	0.5209	517.087 KB	3	aroC_13,dnaN_127,hemD_506,hisD_113,purE_114,sucA_107,thrA_4	3095	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_506	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Farmsen or Poona	The predicted serotypes share the same general formula: 13:z:1,6 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLEI010000001.1 Salmonella enterica strain PNUSAS364317 SAMN36615865-rid18824053.denovo.01, whole genome shotgun sequence	641283..641720	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLEI010000022.1 Salmonella enterica strain PNUSAS364317 SAMN36615865-rid18824053.guided.12, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLEI010000003.1	140447..141316	99.425	870	0						
GCA_032429975.1_PDT001822702.1_genomic.fna	Salmonella_enterica	0.5229	713.851 KB	3	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLEJ010000001.1 Salmonella enterica strain PNUSAS364309 SAMN36615871-rid18824033.denovo.01, whole genome shotgun sequence	396198..396635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLEJ010000032.1 Salmonella enterica strain PNUSAS364309 SAMN36615871-rid18824033.guided.23, whole genome shotgun sequence	4767..5204	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032429995.1_PDT001822699.1_genomic.fna	Salmonella_enterica	0.5223	761.796 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNLEK010000001.1 Salmonella enterica strain PNUSAS364313 SAMN36615868-rid18824003.denovo.01, whole genome shotgun sequence	473677..474114	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNLEK010000020.1 Salmonella enterica strain PNUSAS364313 SAMN36615868-rid18824003.guided.17, whole genome shotgun sequence	2163..2600	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLEK010000005.1	151330..152199	99.77	870	0						
GCA_032430095.1_PDT001822694.1_genomic.fna	Salmonella_enterica	0.5216	165.825 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLEQ010000001.1 Salmonella enterica strain PNUSAS364367 SAMN36617260-rid18823953.denovo.01, whole genome shotgun sequence	193011..193448	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLEQ010000052.1 Salmonella enterica strain PNUSAS364367 SAMN36617260-rid18823953.guided.32, whole genome shotgun sequence	31184..31621	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLEQ010000038.1 Salmonella enterica strain PNUSAS364367 SAMN36617260-rid18823953.denovo.40, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNLEQ010000042.1 Salmonella enterica strain PNUSAS364367 SAMN36617260-rid18823953.denovo.45, whole genome shotgun sequence	3368..3629																																																avrA	ABNLEQ010000014.1	43658..44527	99.54	870	0						
GCA_032430115.1_PDT001822690.1_genomic.fna	Salmonella_enterica	0.521	111.484 KB	12	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLES010000004.1 Salmonella enterica strain PNUSAS364373 SAMN36617254-rid18823913.denovo.04, whole genome shotgun sequence	52364..52801	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLES010000085.1 Salmonella enterica strain PNUSAS364373 SAMN36617254-rid18823913.guided.50, whole genome shotgun sequence	15644..16081	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLES010000005.1	178943..179811	99.195	870	0						
GCA_032430125.1_PDT001822685.1_genomic.fna	Salmonella_enterica	0.5214	194.508 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLEU010000001.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNLEU010000014.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.denovo.14, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNLEU010000014.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.denovo.14, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNLEU010000037.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.denovo.41, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNLEU010000037.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.denovo.41, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNLEU010000048.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.denovo.57, whole genome shotgun sequence	93..908	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	aac(6')-Iaa	97.49	438/438	ABNLEU010000057.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.guided.36, whole genome shotgun sequence	20309..20746	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNLEU010000058.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.guided.40, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNLEU010000058.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.guided.40, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNLEU010000060.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.guided.46, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNLEU010000060.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.guided.46, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNLEU010000063.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.guided.56, whole genome shotgun sequence	127..942	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	floR	98.19	1214/1215	ABNLEU010000037.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.denovo.41, whole genome shotgun sequence	8678..9891	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNLEU010000061.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.guided.48, whole genome shotgun sequence	294..1507	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNLEU010000014.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.denovo.14, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNLEU010000058.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.guided.40, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNLEU010000014.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.denovo.14, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNLEU010000056.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.guided.34, whole genome shotgun sequence	4312..5511	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNLEU010000038.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.denovo.43, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNLEU010000062.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.guided.51, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNLEU010000032.1 Salmonella enterica strain PNUSAS363837 SAMN36616768-rid18823863.denovo.33, whole genome shotgun sequence	9109..9668																																																						avrA	ABNLEU010000006.1	28858..29727	99.655	870	0						
GCA_032430255.1_PDT001822677.1_genomic.fna	Salmonella_enterica	0.5211	478.496 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLEY010000001.1 Salmonella enterica strain PNUSAS364383 SAMN36617504-rid18823783.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLEY010000029.1 Salmonella enterica strain PNUSAS364383 SAMN36617504-rid18823783.guided.17, whole genome shotgun sequence	11836..12273	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNLEY010000022.1 Salmonella enterica strain PNUSAS364383 SAMN36617504-rid18823783.denovo.25, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLEY010000017.1 Salmonella enterica strain PNUSAS364383 SAMN36617504-rid18823783.denovo.20, whole genome shotgun sequence	6825..7467		enterobacteriales	IncFII(S)	100	262 / 262	ABNLEY010000019.1 Salmonella enterica strain PNUSAS364383 SAMN36617504-rid18823783.denovo.22, whole genome shotgun sequence	3413..3674																																									avrA	ABNLEY010000002.1	553300..554169	99.54	870	0						
GCA_032430275.1_PDT001822671.1_genomic.fna	Salmonella_enterica	0.5211	327.339 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	4	Col440I,IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLFA010000001.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.denovo.01, whole genome shotgun sequence	159431..159868	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLFA010000026.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.denovo.26, whole genome shotgun sequence	31733..32569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNLFA010000026.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.denovo.26, whole genome shotgun sequence	30930..31733	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNLFA010000038.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.denovo.46, whole genome shotgun sequence	137..952	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	aac(6')-Iaa	98.63	438/438	ABNLFA010000055.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.guided.34, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLFA010000056.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.guided.37, whole genome shotgun sequence	850..1686	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNLFA010000056.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.guided.37, whole genome shotgun sequence	47..850	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNLFA010000059.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.guided.45, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	blaCMY-2	100	1146/1146	ABNLFA010000026.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.denovo.26, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	819/861	ABNLFA010000033.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.denovo.38, whole genome shotgun sequence	3300..4118	Unknown Beta-lactam	KP050491	blaTEM-206	100	819/861	ABNLFA010000033.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.denovo.38, whole genome shotgun sequence	3300..4118	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	819/861	ABNLFA010000033.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.denovo.38, whole genome shotgun sequence	3300..4118	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNLFA010000052.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.guided.28, whole genome shotgun sequence	29211..30356	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNLFA010000058.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.guided.42, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNLFA010000058.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.guided.42, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNLFA010000058.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.guided.42, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNLFA010000026.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.denovo.26, whole genome shotgun sequence	35705..36918	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNLFA010000057.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.guided.39, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNLFA010000026.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.denovo.26, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNLFA010000052.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.guided.28, whole genome shotgun sequence	55..870	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNLFA010000026.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.denovo.26, whole genome shotgun sequence	33830..35104	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNLFA010000056.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.guided.37, whole genome shotgun sequence	2947..4221	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																														gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	Col440I	93.69	111 / 114	ABNLFA010000034.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.denovo.40, whole genome shotgun sequence	339..449	enterobacteriales	IncC	100	417 / 417	ABNLFA010000024.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.denovo.24, whole genome shotgun sequence	17489..17905		enterobacteriales	IncFII(S)	97.71	262 / 262	ABNLFA010000022.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.denovo.22, whole genome shotgun sequence	5253..5512		enterobacteriales	IncX1	98.66	374 / 374	ABNLFA010000022.1 Salmonella enterica strain PNUSAS364370 SAMN36617251-rid18823723.denovo.22, whole genome shotgun sequence	41106..41479																																		avrA	ABNLFA010000005.1	173549..174417	99.54	870	0						
GCA_032430395.1_PDT001822664.1_genomic.fna	Salmonella_enterica	0.522	74.846 KB	20	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLFG010000020.1 Salmonella enterica strain PNUSAS364365 SAMN36617263-rid18823653.denovo.020, whole genome shotgun sequence	22147..22584	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLFG010000116.1 Salmonella enterica strain PNUSAS364365 SAMN36617263-rid18823653.guided.057, whole genome shotgun sequence	17147..17584	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLFG010000075.1 Salmonella enterica strain PNUSAS364365 SAMN36617263-rid18823653.denovo.076, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNLFG010000039.1 Salmonella enterica strain PNUSAS364365 SAMN36617263-rid18823653.denovo.039, whole genome shotgun sequence	5032..5293																																																avrA	ABNLFG010000004.1	99055..99924	99.54	870	0						
GCA_032430455.1_PDT001822661.1_genomic.fna	Salmonella_enterica	0.5218	251.746 KB	6	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNLFI010000001.1 Salmonella enterica strain PNUSAS363834 SAMN36616774-rid18823623.denovo.01, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNLFI010000048.1 Salmonella enterica strain PNUSAS363834 SAMN36616774-rid18823623.guided.35, whole genome shotgun sequence	3455..3892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLFI010000012.1	101941..102810	99.655	870	0						
GCA_032430515.1_PDT001822645.1_genomic.fna	Salmonella_enterica	0.5208	406.325 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLFK010000001.1 Salmonella enterica strain PNUSAS363832 SAMN36616822-rid18823463.denovo.01, whole genome shotgun sequence	815011..815448	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLFK010000032.1 Salmonella enterica strain PNUSAS363832 SAMN36616822-rid18823463.guided.27, whole genome shotgun sequence	236..673	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNLFK010000016.1 Salmonella enterica strain PNUSAS363832 SAMN36616822-rid18823463.denovo.16, whole genome shotgun sequence	11490..12350	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNLFK010000031.1 Salmonella enterica strain PNUSAS363832 SAMN36616822-rid18823463.guided.23, whole genome shotgun sequence	5861..6721	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLFK010000019.1 Salmonella enterica strain PNUSAS363832 SAMN36616822-rid18823463.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNLFK010000020.1 Salmonella enterica strain PNUSAS363832 SAMN36616822-rid18823463.denovo.22, whole genome shotgun sequence	3415..3676		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNLFK010000014.1 Salmonella enterica strain PNUSAS363832 SAMN36616822-rid18823463.denovo.14, whole genome shotgun sequence	83111..83252																																									avrA	ABNLFK010000002.1	553355..554224	99.54	870	0						
GCA_032430575.1_PDT001822639.1_genomic.fna	Salmonella_enterica	0.5213	257.839 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLFO010000001.1 Salmonella enterica strain PNUSAS364393 SAMN36617507-rid18823403.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLFO010000057.1 Salmonella enterica strain PNUSAS364393 SAMN36617507-rid18823403.guided.39, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLFO010000039.1 Salmonella enterica strain PNUSAS364393 SAMN36617507-rid18823403.denovo.41, whole genome shotgun sequence	6835..7477	enterobacteriales	IncFII(S)	100	262 / 262	ABNLFO010000033.1 Salmonella enterica strain PNUSAS364393 SAMN36617507-rid18823403.denovo.34, whole genome shotgun sequence	29408..29669		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNLFO010000017.1 Salmonella enterica strain PNUSAS364393 SAMN36617507-rid18823403.denovo.17, whole genome shotgun sequence	68476..68617																																									avrA	ABNLFO010000003.1	155205..156073	100	869	0						
GCA_032430675.1_PDT001822629.1_genomic.fna	Salmonella_enterica	0.5215	299.747 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLFT010000001.1 Salmonella enterica strain PNUSAS363874 SAMN36614786-rid18823303.denovo.01, whole genome shotgun sequence	381670..382107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLFT010000031.1 Salmonella enterica strain PNUSAS363874 SAMN36614786-rid18823303.guided.20, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLFT010000003.1	218734..219602	99.77	870	0						
GCA_032430715.1_PDT001822618.1_genomic.fna	Salmonella_enterica	0.5221	223.105 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLFU010000002.1 Salmonella enterica strain PNUSAS364269 SAMN36614810-rid18823193.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLFU010000067.1 Salmonella enterica strain PNUSAS364269 SAMN36614810-rid18823193.guided.42, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNLFU010000032.1 Salmonella enterica strain PNUSAS364269 SAMN36614810-rid18823193.denovo.32, whole genome shotgun sequence	2656..3855	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNLFU010000068.1 Salmonella enterica strain PNUSAS364269 SAMN36614810-rid18823193.guided.46, whole genome shotgun sequence	1803..3002	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	100	643 / 643	ABNLFU010000039.1 Salmonella enterica strain PNUSAS364269 SAMN36614810-rid18823193.denovo.39, whole genome shotgun sequence	6835..7477	enterobacteriales	IncFII(S)	100	262 / 262	ABNLFU010000031.1 Salmonella enterica strain PNUSAS364269 SAMN36614810-rid18823193.denovo.31, whole genome shotgun sequence	29370..29631		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNLFU010000038.1 Salmonella enterica strain PNUSAS364269 SAMN36614810-rid18823193.denovo.38, whole genome shotgun sequence	4986..5127																																									avrA	ABNLFU010000001.1	398344..399212	100	869	0						
GCA_032430815.1_PDT001822615.1_genomic.fna	Salmonella_enterica	0.5209	172.454 KB	9	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLGA010000001.1 Salmonella enterica strain PNUSAS364137 SAMN36613900-rid18823163.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLGA010000057.1 Salmonella enterica strain PNUSAS364137 SAMN36613900-rid18823163.guided.40, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNLGA010000027.1 Salmonella enterica strain PNUSAS364137 SAMN36613900-rid18823163.denovo.27, whole genome shotgun sequence	2806..3339																																																						avrA	ABNLGA010000026.1	39342..40211	99.425	870	0						
GCA_032430835.1_PDT001822606.1_genomic.fna	Salmonella_enterica	0.5209	478.612 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLGC010000001.1 Salmonella enterica strain PNUSAS364135 SAMN36598647-rid18823073.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLGC010000027.1 Salmonella enterica strain PNUSAS364135 SAMN36598647-rid18823073.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLGC010000017.1 Salmonella enterica strain PNUSAS364135 SAMN36598647-rid18823073.denovo.20, whole genome shotgun sequence	6842..7484	enterobacteriales	IncFII(S)	100	262 / 262	ABNLGC010000019.1 Salmonella enterica strain PNUSAS364135 SAMN36598647-rid18823073.denovo.22, whole genome shotgun sequence	3395..3656																																																avrA	ABNLGC010000002.1	585490..586359	99.54	870	0						
GCA_032430855.1_PDT001822597.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLGD010000001.1 Salmonella enterica strain PNUSAS364257 SAMN36614816-rid18822983.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLGD010000027.1 Salmonella enterica strain PNUSAS364257 SAMN36614816-rid18822983.guided.13, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLGD010000016.1 Salmonella enterica strain PNUSAS364257 SAMN36614816-rid18822983.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNLGD010000018.1 Salmonella enterica strain PNUSAS364257 SAMN36614816-rid18822983.denovo.21, whole genome shotgun sequence	3408..3669																																																avrA	ABNLGD010000002.1	553636..554505	99.54	870	0						
GCA_032430895.1_PDT001822588.1_genomic.fna	Salmonella_enterica	0.521	491.377 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLGE010000001.1 Salmonella enterica strain PNUSAS364024 SAMN36613890-rid18822893.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLGE010000029.1 Salmonella enterica strain PNUSAS364024 SAMN36613890-rid18822893.guided.17, whole genome shotgun sequence	8035..8472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLGE010000020.1 Salmonella enterica strain PNUSAS364024 SAMN36613890-rid18822893.denovo.22, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNLGE010000021.1 Salmonella enterica strain PNUSAS364024 SAMN36613890-rid18822893.denovo.24, whole genome shotgun sequence	3414..3675																																																avrA	ABNLGE010000002.1	552968..553837	99.54	870	0						
GCA_032431095.1_PDT001822572.1_genomic.fna	Salmonella_enterica	0.5212	480.935 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLGO010000001.1 Salmonella enterica strain PNUSAS364392 SAMN36617506-rid18822733.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLGO010000026.1 Salmonella enterica strain PNUSAS364392 SAMN36617506-rid18822733.guided.20, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLGO010000018.1 Salmonella enterica strain PNUSAS364392 SAMN36617506-rid18822733.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNLGO010000019.1 Salmonella enterica strain PNUSAS364392 SAMN36617506-rid18822733.denovo.22, whole genome shotgun sequence	3403..3664																																																avrA	ABNLGO010000002.1	553312..554181	99.54	870	0						
GCA_032431115.1_PDT001822571.1_genomic.fna	Salmonella_enterica	0.5213	222.486 KB	6	aroC_43,dnaN_41,hemD_16,hisD_13,purE_41,sucA_13,thrA_4	2328	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(S)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_41	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLGQ010000001.1 Salmonella enterica strain PNUSAS364389 SAMN36617510-rid18822723.denovo.01, whole genome shotgun sequence	168269..168706	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLGQ010000049.1 Salmonella enterica strain PNUSAS364389 SAMN36617510-rid18822723.guided.27, whole genome shotgun sequence	29910..30347	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(S)	93.16	643 / 643	ABNLGQ010000033.1 Salmonella enterica strain PNUSAS364389 SAMN36617510-rid18822723.denovo.36, whole genome shotgun sequence	4527..5169																																																																	
GCA_032431135.1_PDT001822569.1_genomic.fna	Salmonella_enterica	0.5209	480.938 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLGP010000001.1 Salmonella enterica strain PNUSAS364388 SAMN36617511-rid18822703.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLGP010000028.1 Salmonella enterica strain PNUSAS364388 SAMN36617511-rid18822703.guided.15, whole genome shotgun sequence	6158..6595	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLGP010000017.1 Salmonella enterica strain PNUSAS364388 SAMN36617511-rid18822703.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNLGP010000019.1 Salmonella enterica strain PNUSAS364388 SAMN36617511-rid18822703.denovo.22, whole genome shotgun sequence	3402..3663																																																avrA	ABNLGP010000002.1	505608..506477	99.54	870	0						
GCA_032431155.1_PDT001822567.1_genomic.fna	Salmonella_enterica	0.52	425.61 KB	5	aroC_60,dnaN_429,hemD_17,hisD_662,purE_13,sucA_16,thrA_4	2494	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pXuzhou21	aroC	100	100	aroC_60	dnaN	100	100	dnaN_429	hemD	100	100	hemD_17	hisD	100	100	hisD_662	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNLGR010000001.1 Salmonella enterica strain PNUSAS364386 SAMN36617500-rid18822683.denovo.01, whole genome shotgun sequence	79996..80433	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNLGR010000025.1 Salmonella enterica strain PNUSAS364386 SAMN36617500-rid18822683.guided.19, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pXuzhou21	99.86	720 / 720	ABNLGR010000018.1 Salmonella enterica strain PNUSAS364386 SAMN36617500-rid18822683.denovo.20, whole genome shotgun sequence	23692..24411																																																						avrA	ABNLGR010000002.1	150898..151767	99.54	870	0						
GCA_032431175.1_PDT001822566.1_genomic.fna	Salmonella_enterica	0.5212	299.258 KB	6	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLGS010000001.1 Salmonella enterica strain PNUSAS364394 SAMN36617503-rid18822673.denovo.01, whole genome shotgun sequence	377563..378000	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNLGS010000031.1 Salmonella enterica strain PNUSAS364394 SAMN36617503-rid18822673.guided.24, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032431195.1_PDT001822564.1_genomic.fna	Salmonella_enterica	0.5213	469.745 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLGV010000001.1 Salmonella enterica strain PNUSAS364384 SAMN36617502-rid18822653.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLGV010000028.1 Salmonella enterica strain PNUSAS364384 SAMN36617502-rid18822653.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLGV010000019.1 Salmonella enterica strain PNUSAS364384 SAMN36617502-rid18822653.denovo.21, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABNLGV010000016.1 Salmonella enterica strain PNUSAS364384 SAMN36617502-rid18822653.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNLGV010000008.1	174784..175653	99.54	870	0						
GCA_032431215.1_PDT001822565.1_genomic.fna	Salmonella_enterica	0.5214	478.496 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLGT010000001.1 Salmonella enterica strain PNUSAS364387 SAMN36617505-rid18822663.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLGT010000027.1 Salmonella enterica strain PNUSAS364387 SAMN36617505-rid18822663.guided.17, whole genome shotgun sequence	10900..11337	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLGT010000018.1 Salmonella enterica strain PNUSAS364387 SAMN36617505-rid18822663.denovo.20, whole genome shotgun sequence	6823..7465	enterobacteriales	IncFII(S)	100	262 / 262	ABNLGT010000020.1 Salmonella enterica strain PNUSAS364387 SAMN36617505-rid18822663.denovo.23, whole genome shotgun sequence	3417..3678																																																avrA	ABNLGT010000002.1	553312..554181	99.54	870	0						
GCA_032431335.1_PDT001822557.1_genomic.fna	Salmonella_enterica	0.5213	283.966 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLHA010000001.1 Salmonella enterica strain PNUSAS364374 SAMN36617255-rid18822403.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLHA010000035.1 Salmonella enterica strain PNUSAS364374 SAMN36617255-rid18822403.guided.23, whole genome shotgun sequence	12429..12866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLHA010000025.1 Salmonella enterica strain PNUSAS364374 SAMN36617255-rid18822403.denovo.27, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNLHA010000020.1 Salmonella enterica strain PNUSAS364374 SAMN36617255-rid18822403.denovo.20, whole genome shotgun sequence	5998..6259																																																avrA	ABNLHA010000008.1	175196..176065	99.54	870	0						
GCA_032431435.1_PDT001822548.1_genomic.fna	Salmonella_enterica	0.5207	320.894 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	2	acrB_p.R717L,parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLHF010000001.1 Salmonella enterica strain PNUSAS364364 SAMN36617256-rid18822333.denovo.01, whole genome shotgun sequence	471497..471934	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLHF010000043.1 Salmonella enterica strain PNUSAS364364 SAMN36617256-rid18822333.guided.28, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										acrB p.R717L	CGA -> CTA	R -> L	Azithromycin	-	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																						avrA	ABNLHF010000009.1	140470..141338	99.195	870	0						
GCA_032431495.1_PDT001822530.1_genomic.fna	Salmonella_enterica	0.5219	87.164 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLHJ010000001.1 Salmonella enterica strain PNUSAS364363 SAMN36617261-rid18822563.denovo.001, whole genome shotgun sequence	12481..12918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLHJ010000100.1 Salmonella enterica strain PNUSAS364363 SAMN36617261-rid18822563.guided.058, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLHJ010000065.1 Salmonella enterica strain PNUSAS364363 SAMN36617261-rid18822563.denovo.067, whole genome shotgun sequence	6826..7468	enterobacteriales	IncFII(S)	100	262 / 262	ABNLHJ010000045.1 Salmonella enterica strain PNUSAS364363 SAMN36617261-rid18822563.denovo.045, whole genome shotgun sequence	29444..29705																																																avrA	ABNLHJ010000005.1	106623..107491	100	869	0						
GCA_032431555.1_PDT001822526.1_genomic.fna	Salmonella_enterica	0.5223	120.724 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_110,sucA_9,thrA_2	302	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_110	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLHL010000001.1 Salmonella enterica strain PNUSAS364366 SAMN36617262-rid18822173.denovo.01, whole genome shotgun sequence	207031..207468	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLHL010000074.1 Salmonella enterica strain PNUSAS364366 SAMN36617262-rid18822173.guided.37, whole genome shotgun sequence	31247..31684	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLHL010000030.1 Salmonella enterica strain PNUSAS364366 SAMN36617262-rid18822173.denovo.30, whole genome shotgun sequence	44727..45369	enterobacteriales	IncFII(S)	100	262 / 262	ABNLHL010000030.1 Salmonella enterica strain PNUSAS364366 SAMN36617262-rid18822173.denovo.30, whole genome shotgun sequence	29381..29642																																																avrA	ABNLHL010000007.1	122776..123645	99.885	870	0						
GCA_032431575.1_PDT001822525.1_genomic.fna	Salmonella_enterica	0.522	84.842 KB	19	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLHM010000003.1 Salmonella enterica strain PNUSAS364372 SAMN36617253-rid18822543.denovo.003, whole genome shotgun sequence	17217..17654	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLHM010000115.1 Salmonella enterica strain PNUSAS364372 SAMN36617253-rid18822543.guided.080, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLHM010000072.1 Salmonella enterica strain PNUSAS364372 SAMN36617253-rid18822543.denovo.072, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABNLHM010000081.1 Salmonella enterica strain PNUSAS364372 SAMN36617253-rid18822543.denovo.082, whole genome shotgun sequence	3395..3656																																																avrA	ABNLHM010000019.1	81716..82585	99.54	870	0						
GCA_032431585.1_PDT001822519.1_genomic.fna	Salmonella_enterica	0.521	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLHN010000001.1 Salmonella enterica strain PNUSAS363839 SAMN36616770-rid18822123.denovo.01, whole genome shotgun sequence	774495..774932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLHN010000024.1 Salmonella enterica strain PNUSAS363839 SAMN36616770-rid18822123.guided.17, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLHN010000017.1 Salmonella enterica strain PNUSAS363839 SAMN36616770-rid18822123.denovo.19, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNLHN010000018.1 Salmonella enterica strain PNUSAS363839 SAMN36616770-rid18822123.denovo.20, whole genome shotgun sequence	3429..3690																																																avrA	ABNLHN010000002.1	553618..554487	99.54	870	0						
GCA_032431615.1_PDT001822518.1_genomic.fna	Salmonella_enterica	0.5205	168.233 KB	9	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLHO010000001.1 Salmonella enterica strain PNUSAS364371 SAMN36617252-rid18822523.denovo.01, whole genome shotgun sequence	374697..375134	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLHO010000073.1 Salmonella enterica strain PNUSAS364371 SAMN36617252-rid18822523.guided.29, whole genome shotgun sequence	20568..21005	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLHO010000016.1	81526..82394	99.31	870	0						
GCA_032431635.1_PDT001822516.1_genomic.fna	Salmonella_enterica	0.522	257.856 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLHR010000003.1 Salmonella enterica strain PNUSAS363828 SAMN36616823-rid18822103.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLHR010000048.1 Salmonella enterica strain PNUSAS363828 SAMN36616823-rid18822103.guided.36, whole genome shotgun sequence	909..1346	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLHR010000023.1 Salmonella enterica strain PNUSAS363828 SAMN36616823-rid18822103.denovo.23, whole genome shotgun sequence	44739..45381	enterobacteriales	IncFII(S)	100	262 / 262	ABNLHR010000023.1 Salmonella enterica strain PNUSAS363828 SAMN36616823-rid18822103.denovo.23, whole genome shotgun sequence	29394..29655																																																avrA	ABNLHR010000001.1	484788..485656	100	869	0						
GCA_032431675.1_PDT001822512.1_genomic.fna	Salmonella_enterica	0.5215	232.069 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLHQ010000001.1 Salmonella enterica strain PNUSAS364369 SAMN36617250-rid18822083.denovo.01, whole genome shotgun sequence	379683..380120	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLHQ010000037.1 Salmonella enterica strain PNUSAS364369 SAMN36617250-rid18822083.guided.28, whole genome shotgun sequence	8005..8442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLHQ010000008.1 Salmonella enterica strain PNUSAS364369 SAMN36617250-rid18822083.denovo.08, whole genome shotgun sequence	181593..182235	enterobacteriales	IncFII(S)	100	262 / 262	ABNLHQ010000023.1 Salmonella enterica strain PNUSAS364369 SAMN36617250-rid18822083.denovo.23, whole genome shotgun sequence	5032..5293																																																avrA	ABNLHQ010000005.1	149456..150325	99.54	870	0						
GCA_032431715.1_PDT001822510.1_genomic.fna	Salmonella_enterica	0.522	222.127 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLHT010000004.1 Salmonella enterica strain PNUSAS363840 SAMN36616820-rid18822493.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLHT010000045.1 Salmonella enterica strain PNUSAS363840 SAMN36616820-rid18822493.guided.38, whole genome shotgun sequence	3460..3897	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLHT010000018.1 Salmonella enterica strain PNUSAS363840 SAMN36616820-rid18822493.denovo.18, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNLHT010000018.1 Salmonella enterica strain PNUSAS363840 SAMN36616820-rid18822493.denovo.18, whole genome shotgun sequence	22546..22807																																																avrA	ABNLHT010000006.1	94139..95007	100	869	0						
GCA_032431735.1_PDT001822507.1_genomic.fna	Salmonella_enterica	0.5217	609.08 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNLHV010000001.1 Salmonella enterica strain PNUSAS363836 SAMN36616821-rid18822043.denovo.01, whole genome shotgun sequence	458315..458752	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNLHV010000022.1 Salmonella enterica strain PNUSAS363836 SAMN36616821-rid18822043.guided.16, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLHV010000002.1	553689..554558	99.655	870	0						
GCA_032431755.1_PDT001822508.1_genomic.fna	Salmonella_enterica	0.5214	682.779 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNLHU010000001.1 Salmonella enterica strain PNUSAS363833 SAMN36616773-rid18822053.denovo.01, whole genome shotgun sequence	510589..511026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNLHU010000019.1 Salmonella enterica strain PNUSAS363833 SAMN36616773-rid18822053.guided.13, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLHU010000004.1	181803..182671	99.425	870	0						
GCA_032431775.1_PDT001822506.1_genomic.fna	Salmonella_enterica	0.5217	378.608 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLHW010000002.1 Salmonella enterica strain PNUSAS363838 SAMN36616767-rid18822033.denovo.02, whole genome shotgun sequence	207388..207825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLHW010000043.1 Salmonella enterica strain PNUSAS363838 SAMN36616767-rid18822033.guided.26, whole genome shotgun sequence	30269..30706	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLHW010000021.1 Salmonella enterica strain PNUSAS363838 SAMN36616767-rid18822033.denovo.22, whole genome shotgun sequence	44718..45360	enterobacteriales	IncFII(S)	100	262 / 262	ABNLHW010000021.1 Salmonella enterica strain PNUSAS363838 SAMN36616767-rid18822033.denovo.22, whole genome shotgun sequence	29372..29633																																																avrA	ABNLHW010000001.1	450793..451662	99.885	870	0						
GCA_032431795.1_PDT001822504.1_genomic.fna	Salmonella_enterica	0.5221	496.513 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLHZ010000001.1 Salmonella enterica strain PNUSAS363831 SAMN36616775-rid18822023.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLHZ010000030.1 Salmonella enterica strain PNUSAS363831 SAMN36616775-rid18822023.guided.19, whole genome shotgun sequence	12491..12928	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLHZ010000002.1	129887..130756	98.966	870	0						
GCA_032431815.1_PDT001822505.1_genomic.fna	Salmonella_enterica	0.5226	393.841 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLHX010000001.1 Salmonella enterica strain PNUSAS363829 SAMN36616772-rid18822483.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLHX010000029.1 Salmonella enterica strain PNUSAS363829 SAMN36616772-rid18822483.guided.20, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032431835.1_PDT001822503.1_genomic.fna	Salmonella_enterica	0.5222	336.494 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLHY010000001.1 Salmonella enterica strain PNUSAS363835 SAMN36616769-rid18822473.denovo.01, whole genome shotgun sequence	789056..789493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLHY010000029.1 Salmonella enterica strain PNUSAS363835 SAMN36616769-rid18822473.guided.21, whole genome shotgun sequence	10094..10531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLHY010000003.1	153273..154142	99.195	870	0						
GCA_032431855.1_PDT001822502.1_genomic.fna	Salmonella_enterica	0.5219	207.623 KB	9	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	-:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	-	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:y:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLIA010000001.1 Salmonella enterica strain PNUSAS363827 SAMN36616776-rid18822013.denovo.01, whole genome shotgun sequence	370672..371109	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNLIA010000058.1 Salmonella enterica strain PNUSAS363827 SAMN36616776-rid18822013.guided.41, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032431875.1_PDT001822501.1_genomic.fna	Salmonella_enterica	0.5217	550.794 KB	2	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNLIB010000001.1 Salmonella enterica strain PNUSAS364312 SAMN36615869-rid18822003.denovo.01, whole genome shotgun sequence	1390065..1390502	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNLIB010000016.1 Salmonella enterica strain PNUSAS364312 SAMN36615869-rid18822003.guided.14, whole genome shotgun sequence	3895..4332	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLIB010000002.1	149711..150580	99.425	870	0						
GCA_032431895.1_PDT001822490.1_genomic.fna	Salmonella_enterica	0.5206	490.113 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLIC010000001.1 Salmonella enterica strain PNUSAS364296 SAMN36615885-rid18821913.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLIC010000023.1 Salmonella enterica strain PNUSAS364296 SAMN36615885-rid18821913.guided.16, whole genome shotgun sequence	25480..25917	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLIC010000013.1 Salmonella enterica strain PNUSAS364296 SAMN36615885-rid18821913.denovo.13, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	ABNLIC010000017.1 Salmonella enterica strain PNUSAS364296 SAMN36615885-rid18821913.denovo.20, whole genome shotgun sequence	3364..3625		enterobacteriales	IncX1	98.93	374 / 374	ABNLIC010000014.1 Salmonella enterica strain PNUSAS364296 SAMN36615885-rid18821913.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNLIC010000002.1	553684..554553	99.54	870	0						
GCA_032431915.1_PDT001822500.1_genomic.fna	Salmonella_enterica	0.5217	378.178 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLIF010000001.1 Salmonella enterica strain PNUSAS364310 SAMN36615872-rid18821993.denovo.01, whole genome shotgun sequence	559718..560155	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLIF010000029.1 Salmonella enterica strain PNUSAS364310 SAMN36615872-rid18821993.guided.25, whole genome shotgun sequence	2100..2537	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLIF010000011.1	140231..141099	99.195	870	0						
GCA_032431935.1_PDT001822488.1_genomic.fna	Salmonella_enterica	0.5218	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLIE010000004.1 Salmonella enterica strain PNUSAS364303 SAMN36615878-rid18821893.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLIE010000052.1 Salmonella enterica strain PNUSAS364303 SAMN36615878-rid18821893.guided.36, whole genome shotgun sequence	4768..5205	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLIE010000018.1 Salmonella enterica strain PNUSAS364303 SAMN36615878-rid18821893.denovo.18, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNLIE010000018.1 Salmonella enterica strain PNUSAS364303 SAMN36615878-rid18821893.denovo.18, whole genome shotgun sequence	30406..30667																																																avrA	ABNLIE010000005.1	175018..175886	100	869	0						
GCA_032431955.1_PDT001822489.1_genomic.fna	Salmonella_enterica	0.5209	707.807 KB	3	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLID010000002.1 Salmonella enterica strain PNUSAS364318 SAMN36615864-rid18821903.denovo.02, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLID010000020.1 Salmonella enterica strain PNUSAS364318 SAMN36615864-rid18821903.guided.12, whole genome shotgun sequence	8528..8965	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032431975.1_PDT001822487.1_genomic.fna	Salmonella_enterica	0.521	707.807 KB	3	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLIG010000002.1 Salmonella enterica strain PNUSAS364314 SAMN36615867-rid18821883.denovo.02, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLIG010000026.1 Salmonella enterica strain PNUSAS364314 SAMN36615867-rid18821883.guided.15, whole genome shotgun sequence	363..800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032431995.1_PDT001822486.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLIH010000001.1 Salmonella enterica strain PNUSAS364320 SAMN36615850-rid18821873.denovo.01, whole genome shotgun sequence	772388..772825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLIH010000025.1 Salmonella enterica strain PNUSAS364320 SAMN36615850-rid18821873.guided.17, whole genome shotgun sequence	4931..5368	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLIH010000012.1 Salmonella enterica strain PNUSAS364320 SAMN36615850-rid18821873.denovo.12, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	ABNLIH010000016.1 Salmonella enterica strain PNUSAS364320 SAMN36615850-rid18821873.denovo.19, whole genome shotgun sequence	3415..3676																																																avrA	ABNLIH010000002.1	553624..554493	99.54	870	0						
GCA_032432015.1_PDT001822485.1_genomic.fna	Salmonella_enterica	0.5213	440.063 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLII010000001.1 Salmonella enterica strain PNUSAS364311 SAMN36615870-rid18821863.denovo.01, whole genome shotgun sequence	158888..159325	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLII010000027.1 Salmonella enterica strain PNUSAS364311 SAMN36615870-rid18821863.guided.18, whole genome shotgun sequence	6376..6813	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLII010000013.1 Salmonella enterica strain PNUSAS364311 SAMN36615870-rid18821863.denovo.13, whole genome shotgun sequence	36763..37405	enterobacteriales	IncFII(S)	100	262 / 262	ABNLII010000013.1 Salmonella enterica strain PNUSAS364311 SAMN36615870-rid18821863.denovo.13, whole genome shotgun sequence	42855..43116																																																avrA	ABNLII010000002.1	553196..554065	99.54	870	0						
GCA_032432035.1_PDT001822484.1_genomic.fna	Salmonella_enterica	0.5199	391.77 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLIJ010000001.1 Salmonella enterica strain PNUSAS364306 SAMN36615875-rid18821853.denovo.01, whole genome shotgun sequence	563827..564264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLIJ010000032.1 Salmonella enterica strain PNUSAS364306 SAMN36615875-rid18821853.guided.17, whole genome shotgun sequence	13437..13874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLIJ010000011.1	140075..140943	99.195	870	0						
GCA_032432055.1_PDT001822483.1_genomic.fna	Salmonella_enterica	0.5216	532.769 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNLIK010000001.1 Salmonella enterica strain PNUSAS364302 SAMN36615879-rid18821843.denovo.01, whole genome shotgun sequence	385228..385665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNLIK010000023.1 Salmonella enterica strain PNUSAS364302 SAMN36615879-rid18821843.guided.19, whole genome shotgun sequence	2238..2675	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLIK010000002.1	149711..150580	99.54	870	0						
GCA_032432075.1_PDT001822482.1_genomic.fna	Salmonella_enterica	0.5214	376.361 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLIL010000001.1 Salmonella enterica strain PNUSAS364305 SAMN36615876-rid18821833.denovo.01, whole genome shotgun sequence	569502..569939	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLIL010000040.1 Salmonella enterica strain PNUSAS364305 SAMN36615876-rid18821833.guided.30, whole genome shotgun sequence	1422..1859	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLIL010000007.1	174559..175428	99.885	870	0						
GCA_032432095.1_PDT001822480.1_genomic.fna	Salmonella_enterica	0.5203	490.113 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLIN010000001.1 Salmonella enterica strain PNUSAS364299 SAMN36615883-rid18821813.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLIN010000023.1 Salmonella enterica strain PNUSAS364299 SAMN36615883-rid18821813.guided.15, whole genome shotgun sequence	10350..10787	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLIN010000011.1 Salmonella enterica strain PNUSAS364299 SAMN36615883-rid18821813.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNLIN010000015.1 Salmonella enterica strain PNUSAS364299 SAMN36615883-rid18821813.denovo.18, whole genome shotgun sequence	3407..3668		enterobacteriales	IncX1	98.93	374 / 374	ABNLIN010000012.1 Salmonella enterica strain PNUSAS364299 SAMN36615883-rid18821813.denovo.13, whole genome shotgun sequence	32011..32384																																									avrA	ABNLIN010000002.1	553684..554553	99.54	870	0						
GCA_032432115.1_PDT001822481.1_genomic.fna	Salmonella_enterica	0.5207	492.834 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLIM010000001.1 Salmonella enterica strain PNUSAS364298 SAMN36615882-rid18821823.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLIM010000022.1 Salmonella enterica strain PNUSAS364298 SAMN36615882-rid18821823.guided.19, whole genome shotgun sequence	363..800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLIM010000011.1 Salmonella enterica strain PNUSAS364298 SAMN36615882-rid18821823.denovo.11, whole genome shotgun sequence	40518..41160	enterobacteriales	IncFII(S)	100	262 / 262	ABNLIM010000015.1 Salmonella enterica strain PNUSAS364298 SAMN36615882-rid18821823.denovo.17, whole genome shotgun sequence	3325..3586		enterobacteriales	IncX1	98.93	374 / 374	ABNLIM010000012.1 Salmonella enterica strain PNUSAS364298 SAMN36615882-rid18821823.denovo.12, whole genome shotgun sequence	32011..32384																																									avrA	ABNLIM010000002.1	553684..554553	99.54	870	0						
GCA_032432135.1_PDT001822478.1_genomic.fna	Salmonella_enterica	0.5133	242.685 KB	5	aroC_56,dnaN_25,hemD_28,hisD_24,purE_237,sucA_86,thrA_78	3711	48:z36:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_56	dnaN	100	100	dnaN_25	hemD	100	100	hemD_28	hisD	100	100	hisD_24	purE	100	100	purE_237	sucA	100	100	sucA_86	thrA	100	100	thrA_78	48	z36	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 48:z36:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032432155.1_PDT001822479.1_genomic.fna	Salmonella_enterica	0.5209	707.807 KB	2	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLIO010000001.1 Salmonella enterica strain PNUSAS364315 SAMN36615861-rid18821803.denovo.01, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLIO010000023.1 Salmonella enterica strain PNUSAS364315 SAMN36615861-rid18821803.guided.13, whole genome shotgun sequence	8198..8635	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032432175.1_PDT001822477.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLIR010000001.1 Salmonella enterica strain PNUSAS364300 SAMN36615862-rid18821783.denovo.01, whole genome shotgun sequence	780559..780996	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLIR010000023.1 Salmonella enterica strain PNUSAS364300 SAMN36615862-rid18821783.guided.18, whole genome shotgun sequence	6324..6761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLIR010000012.1 Salmonella enterica strain PNUSAS364300 SAMN36615862-rid18821783.denovo.12, whole genome shotgun sequence	40531..41173	enterobacteriales	IncFII(S)	100	262 / 262	ABNLIR010000016.1 Salmonella enterica strain PNUSAS364300 SAMN36615862-rid18821783.denovo.19, whole genome shotgun sequence	3388..3649																																																avrA	ABNLIR010000002.1	553636..554505	99.54	870	0						
GCA_032432215.1_PDT001822475.1_genomic.fna	Salmonella_enterica	0.5219	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLIU010000006.1 Salmonella enterica strain PNUSAS364308 SAMN36615873-rid18821763.denovo.06, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLIU010000051.1 Salmonella enterica strain PNUSAS364308 SAMN36615873-rid18821763.guided.40, whole genome shotgun sequence	3302..3739	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLIU010000018.1 Salmonella enterica strain PNUSAS364308 SAMN36615873-rid18821763.denovo.18, whole genome shotgun sequence	48375..49017	enterobacteriales	IncFII(S)	100	262 / 262	ABNLIU010000018.1 Salmonella enterica strain PNUSAS364308 SAMN36615873-rid18821763.denovo.18, whole genome shotgun sequence	64101..64362																																																avrA	ABNLIU010000004.1	174651..175519	100	869	0						
GCA_032432375.1_PDT001822469.1_genomic.fna	Salmonella_enterica	0.5225	480.777 KB	4	aroC_13,dnaN_109,hemD_49,hisD_13,purE_220,sucA_13,thrA_4	754	30:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_220	sucA	100	100	sucA_13	thrA	100	100	thrA_4	30	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Urbana		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLIY010000001.1 Salmonella enterica strain PNUSAS364322 SAMN36615848-rid18821703.denovo.01, whole genome shotgun sequence	346640..347077	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.93	387/438	ABNLIY010000030.1 Salmonella enterica strain PNUSAS364322 SAMN36615848-rid18821703.guided.25, whole genome shotgun sequence	1..387	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLIY010000003.1	95271..96140	99.425	870	0						
GCA_032432455.1_PDT001822441.1_genomic.fna	Salmonella_enterica	0.5209	700.184 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLJE010000001.1 Salmonella enterica strain PNUSAS363878 SAMN36614763-rid18821423.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLJE010000044.1 Salmonella enterica strain PNUSAS363878 SAMN36614763-rid18821423.guided.22, whole genome shotgun sequence	3725..4162	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLJE010000003.1	504164..505034	99.196	871	0						
GCA_032432475.1_PDT001822463.1_genomic.fna	Salmonella_enterica	0.5208	237.38 KB	7	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLJF010000008.1 Salmonella enterica strain PNUSAS363889 SAMN36614775-rid18821643.denovo.08, whole genome shotgun sequence	78381..78818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNLJF010000054.1 Salmonella enterica strain PNUSAS363889 SAMN36614775-rid18821643.guided.30, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLJF010000001.1	145044..145912	99.31	870	0						
GCA_032432515.1_PDT001822438.1_genomic.fna	Salmonella_enterica	0.5205	186.238 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	0		1	pXuzhou21	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLJI010000001.1 Salmonella enterica strain PNUSAS364179 SAMN36614780-rid18821393.denovo.01, whole genome shotgun sequence	458970..459407	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLJI010000043.1 Salmonella enterica strain PNUSAS364179 SAMN36614780-rid18821393.denovo.44, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNLJI010000043.1 Salmonella enterica strain PNUSAS364179 SAMN36614780-rid18821393.denovo.44, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNLJI010000059.1 Salmonella enterica strain PNUSAS364179 SAMN36614780-rid18821393.guided.49, whole genome shotgun sequence	2415..2852	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLJI010000060.1 Salmonella enterica strain PNUSAS364179 SAMN36614780-rid18821393.guided.50, whole genome shotgun sequence	2846..3682	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNLJI010000060.1 Salmonella enterica strain PNUSAS364179 SAMN36614780-rid18821393.guided.50, whole genome shotgun sequence	2043..2846	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNLJI010000049.1 Salmonella enterica strain PNUSAS364179 SAMN36614780-rid18821393.denovo.53, whole genome shotgun sequence	1334..2194	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNLJI010000062.1 Salmonella enterica strain PNUSAS364179 SAMN36614780-rid18821393.guided.55, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNLJI010000043.1 Salmonella enterica strain PNUSAS364179 SAMN36614780-rid18821393.denovo.44, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNLJI010000060.1 Salmonella enterica strain PNUSAS364179 SAMN36614780-rid18821393.guided.50, whole genome shotgun sequence	1167..1982	Sulfamethoxazole	HQ840942																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	pXuzhou21	99.31	720 / 720	ABNLJI010000032.1 Salmonella enterica strain PNUSAS364179 SAMN36614780-rid18821393.denovo.32, whole genome shotgun sequence	20450..21169																																																						avrA	ABNLJI010000002.1	93863..94732	99.885	870	0						
GCA_032432555.1_PDT001822436.1_genomic.fna	Salmonella_enterica	0.5206	338.231 KB	6	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLJH010000001.1 Salmonella enterica strain PNUSAS364196 SAMN36614792-rid18821373.denovo.01, whole genome shotgun sequence	407530..407967	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLJH010000031.1 Salmonella enterica strain PNUSAS364196 SAMN36614792-rid18821373.guided.23, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032432595.1_PDT001822423.1_genomic.fna	Salmonella_enterica	0.5208	182.469 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLJK010000001.1 Salmonella enterica strain PNUSAS364264 SAMN36614815-rid18821253.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLJK010000061.1 Salmonella enterica strain PNUSAS364264 SAMN36614815-rid18821253.guided.35, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLJK010000010.1	98459..99327	99.77	870	0						
GCA_032432615.1_PDT001822421.1_genomic.fna	Salmonella_enterica	0.5217	272.416 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLJM010000002.1 Salmonella enterica strain PNUSAS364258 SAMN36614821-rid18821233.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLJM010000055.1 Salmonella enterica strain PNUSAS364258 SAMN36614821-rid18821233.guided.41, whole genome shotgun sequence	2890..3327	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLJM010000016.1 Salmonella enterica strain PNUSAS364258 SAMN36614821-rid18821233.denovo.16, whole genome shotgun sequence	6835..7477	enterobacteriales	IncFII(S)	100	262 / 262	ABNLJM010000016.1 Salmonella enterica strain PNUSAS364258 SAMN36614821-rid18821233.denovo.16, whole genome shotgun sequence	22562..22823																																																avrA	ABNLJM010000007.1	98459..99327	100	869	0						
GCA_032432635.1_PDT001822422.1_genomic.fna	Salmonella_enterica	0.5214	405.934 KB	5	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNLJL010000001.1 Salmonella enterica strain PNUSAS364263 SAMN36614823-rid18821243.denovo.01, whole genome shotgun sequence	425225..425662	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNLJL010000042.1 Salmonella enterica strain PNUSAS364263 SAMN36614823-rid18821243.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLJL010000007.1	149710..150579	99.425	870	0						
GCA_032432655.1_PDT001822420.1_genomic.fna	Salmonella_enterica	0.5191	166.657 KB	11	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_150,thrA_22	464	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),pXuzhou21	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_150	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLJN010000005.1 Salmonella enterica strain PNUSAS364265 SAMN36614814-rid18821223.denovo.05, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNLJN010000071.1 Salmonella enterica strain PNUSAS364265 SAMN36614814-rid18821223.guided.26, whole genome shotgun sequence	38872..39309	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNLJN010000035.1 Salmonella enterica strain PNUSAS364265 SAMN36614814-rid18821223.denovo.37, whole genome shotgun sequence	6219..6861	enterobacteriales	pXuzhou21	99.86	720 / 720	ABNLJN010000034.1 Salmonella enterica strain PNUSAS364265 SAMN36614814-rid18821223.denovo.36, whole genome shotgun sequence	23692..24411																																																											
GCA_032432675.1_PDT001822418.1_genomic.fna	Salmonella_enterica	0.5193	172.332 KB	8	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLJP010000005.1 Salmonella enterica strain PNUSAS364256 SAMN36614820-rid18821203.denovo.05, whole genome shotgun sequence	225325..225762	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLJP010000058.1 Salmonella enterica strain PNUSAS364256 SAMN36614820-rid18821203.guided.42, whole genome shotgun sequence	5694..6131	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032432695.1_PDT001822419.1_genomic.fna	Salmonella_enterica	0.5211	430.196 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLJO010000001.1 Salmonella enterica strain PNUSAS364260 SAMN36614817-rid18821213.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLJO010000037.1 Salmonella enterica strain PNUSAS364260 SAMN36614817-rid18821213.guided.22, whole genome shotgun sequence	2267..2704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNLJO010000016.1 Salmonella enterica strain PNUSAS364260 SAMN36614817-rid18821213.denovo.16, whole genome shotgun sequence	2465..2998																																																						avrA	ABNLJO010000011.1	150693..151563	99.196	871	0						
GCA_032432855.1_PDT001917048.1_genomic.fna	Salmonella_enterica	0.5211	552.8 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	-	Salmonella enterica subspecies enterica (subspecies I)	I 9:l,z28:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNLJR010000001.1 Salmonella enterica strain PNUSAS388088 SAMN37675448-rid19624723.denovo.01, whole genome shotgun sequence	187776..188213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNLJR010000024.1 Salmonella enterica strain PNUSAS388088 SAMN37675448-rid19624723.guided.19, whole genome shotgun sequence	6554..6991	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLJR010000003.1	497817..498685	99.425	870	0						
GCA_032432905.1_PDT001917047.1_genomic.fna	Salmonella_enterica	0.5221	299.938 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLJY010000002.1 Salmonella enterica strain PNUSAS388078 SAMN37675466-rid19625313.denovo.02, whole genome shotgun sequence	37883..38320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLJY010000032.1 Salmonella enterica strain PNUSAS388078 SAMN37675466-rid19625313.guided.27, whole genome shotgun sequence	6129..6566	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLJY010000003.1	228887..229755	99.77	870	0						
GCA_032432935.1_PDT001917058.1_genomic.fna	Salmonella_enterica	0.5202	406.252 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLJT010000001.1 Salmonella enterica strain PNUSAS388076 SAMN37675465-rid19624743.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLJT010000024.1 Salmonella enterica strain PNUSAS388076 SAMN37675465-rid19624743.guided.13, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLJT010000017.1 Salmonella enterica strain PNUSAS388076 SAMN37675465-rid19624743.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNLJT010000018.1 Salmonella enterica strain PNUSAS388076 SAMN37675465-rid19624743.denovo.21, whole genome shotgun sequence	3393..3654		enterobacteriales	IncX1	98.93	374 / 374	ABNLJT010000013.1 Salmonella enterica strain PNUSAS388076 SAMN37675465-rid19624743.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNLJT010000002.1	553690..554559	99.54	870	0						
GCA_032432955.1_PDT001917050.1_genomic.fna	Salmonella_enterica	0.5192	659.036 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLJS010000001.1 Salmonella enterica strain PNUSAS388074 SAMN37675462-rid19624733.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLJS010000037.1 Salmonella enterica strain PNUSAS388074 SAMN37675462-rid19624733.guided.12, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLJS010000003.1	506850..507720	99.196	871	0						
GCA_032432975.1_PDT001917040.1_genomic.fna	Salmonella_enterica	0.5212	252.431 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLJU010000002.1 Salmonella enterica strain PNUSAS388073 SAMN37675461-rid19624713.denovo.02, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLJU010000038.1 Salmonella enterica strain PNUSAS388073 SAMN37675461-rid19624713.guided.28, whole genome shotgun sequence	26948..27385	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNLJU010000020.1 Salmonella enterica strain PNUSAS388073 SAMN37675461-rid19624713.denovo.20, whole genome shotgun sequence	34958..35491																																																						avrA	ABNLJU010000016.1	93994..94863	99.425	870	0						
GCA_032432995.1_PDT001917033.1_genomic.fna	Salmonella_enterica	0.5223	280.215 KB	6	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLJW010000001.1 Salmonella enterica strain PNUSAS388094 SAMN37675434-rid19624693.denovo.01, whole genome shotgun sequence	144753..145190	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNLJW010000033.1 Salmonella enterica strain PNUSAS388094 SAMN37675434-rid19624693.guided.26, whole genome shotgun sequence	4191..4628	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLJW010000009.1	39486..40355	99.77	870	0						
GCA_032433015.1_PDT001917017.1_genomic.fna	Salmonella_enterica	0.5209	251.438 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLJV010000001.1 Salmonella enterica strain PNUSAS388695 SAMN37675442-rid19625053.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLJV010000041.1 Salmonella enterica strain PNUSAS388695 SAMN37675442-rid19625053.guided.31, whole genome shotgun sequence	24942..25379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLJV010000003.1	175009..175877	99.77	870	0						
GCA_032433035.1_PDT001916984.1_genomic.fna	Salmonella_enterica	0.5217	482.825 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNLJZ010000002.1 Salmonella enterica strain PNUSAS388494 SAMN37672157-rid19624643.denovo.02, whole genome shotgun sequence	404008..404445	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNLJZ010000031.1 Salmonella enterica strain PNUSAS388494 SAMN37672157-rid19624643.guided.23, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLJZ010000001.1	517482..518351	99.655	870	0						
GCA_032433055.1_PDT001917018.1_genomic.fna	Salmonella_enterica	0.5222	301.777 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLJX010000001.1 Salmonella enterica strain PNUSAS388081 SAMN37675428-rid19625063.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLJX010000035.1 Salmonella enterica strain PNUSAS388081 SAMN37675428-rid19625063.guided.27, whole genome shotgun sequence	2795..3232	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLJX010000002.1	94207..95076	99.31	870	0						
GCA_032433075.1_PDT001916983.1_genomic.fna	Salmonella_enterica	0.5215	230.48 KB	7	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLKE010000001.1 Salmonella enterica strain PNUSAS388512 SAMN37672155-rid19624633.denovo.01, whole genome shotgun sequence	414159..414596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLKE010000036.1 Salmonella enterica strain PNUSAS388512 SAMN37672155-rid19624633.guided.28, whole genome shotgun sequence	7101..7538	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLKE010000007.1	192373..193241	99.195	870	0						
GCA_032433095.1_PDT001916982.1_genomic.fna	Salmonella_enterica	0.5214	219.385 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLKD010000002.1 Salmonella enterica strain PNUSAS388510 SAMN37672166-rid19624623.denovo.02, whole genome shotgun sequence	239063..239500	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLKD010000043.1 Salmonella enterica strain PNUSAS388510 SAMN37672166-rid19624623.guided.30, whole genome shotgun sequence	15827..16264	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLKD010000030.1 Salmonella enterica strain PNUSAS388510 SAMN37672166-rid19624623.denovo.31, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNLKD010000034.1 Salmonella enterica strain PNUSAS388510 SAMN37672166-rid19624623.denovo.37, whole genome shotgun sequence	3402..3663																																																avrA	ABNLKD010000005.1	174842..175711	99.54	870	0						
GCA_032433115.1_PDT001916981.1_genomic.fna	Salmonella_enterica	0.5196	234.968 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLKB010000001.1 Salmonella enterica strain PNUSAS388492 SAMN37672145-rid19624613.denovo.01, whole genome shotgun sequence	486124..486561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLKB010000037.1 Salmonella enterica strain PNUSAS388492 SAMN37672145-rid19624613.guided.20, whole genome shotgun sequence	44275..44712	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNLKB010000003.1 Salmonella enterica strain PNUSAS388492 SAMN37672145-rid19624613.denovo.03, whole genome shotgun sequence	389047..389469	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNLKB010000039.1 Salmonella enterica strain PNUSAS388492 SAMN37672145-rid19624613.guided.28, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLKB010000002.1	121179..122048	99.195	870	0						
GCA_032433135.1_PDT001916980.1_genomic.fna	Salmonella_enterica	0.5215	716.484 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNLKA010000001.1 Salmonella enterica strain PNUSAS388488 SAMN37672168-rid19624603.denovo.01, whole genome shotgun sequence	486958..487395	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNLKA010000023.1 Salmonella enterica strain PNUSAS388488 SAMN37672168-rid19624603.guided.19, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLKA010000003.1	544707..545575	99.425	870	0						
GCA_032433155.1_PDT001916979.1_genomic.fna	Salmonella_enterica	0.5218	427.925 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNLKG010000001.1 Salmonella enterica strain PNUSAS388504 SAMN37672172-rid19624593.denovo.01, whole genome shotgun sequence	486957..487394	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNLKG010000025.1 Salmonella enterica strain PNUSAS388504 SAMN37672172-rid19624593.guided.22, whole genome shotgun sequence	1578..2015	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLKG010000002.1	544607..545475	99.425	870	0						
GCA_032433175.1_PDT001916978.1_genomic.fna	Salmonella_enterica	0.5225	248.845 KB	8	aroC_2,dnaN_14,hemD_24,hisD_14,purE_37,sucA_19,thrA_8	86	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_37	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B	Detected the SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLKF010000002.1 Salmonella enterica strain PNUSAS388508 SAMN37672164-rid19624583.denovo.02, whole genome shotgun sequence	349805..350242	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLKF010000036.1 Salmonella enterica strain PNUSAS388508 SAMN37672164-rid19624583.guided.31, whole genome shotgun sequence	1753..2190	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032433195.1_PDT001916977.1_genomic.fna	Salmonella_enterica	0.5223	287.198 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNLKC010000002.1 Salmonella enterica strain PNUSAS388514 SAMN37672160-rid19624573.denovo.02, whole genome shotgun sequence	624995..625432	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNLKC010000030.1 Salmonella enterica strain PNUSAS388514 SAMN37672160-rid19624573.guided.21, whole genome shotgun sequence	16429..16866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032433215.1_PDT001916976.1_genomic.fna	Salmonella_enterica	0.5217	248.331 KB	6	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLKH010000003.1 Salmonella enterica strain PNUSAS388502 SAMN37672153-rid19624563.denovo.03, whole genome shotgun sequence	181488..181925	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNLKH010000049.1 Salmonella enterica strain PNUSAS388502 SAMN37672153-rid19624563.guided.30, whole genome shotgun sequence	1348..1785	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLKH010000002.1	109034..109903	99.77	870	0						
GCA_032433235.1_PDT001916975.1_genomic.fna	Salmonella_enterica	0.521	342.841 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLKJ010000001.1 Salmonella enterica strain PNUSAS388493 SAMN37672147-rid19624553.denovo.01, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLKJ010000039.1 Salmonella enterica strain PNUSAS388493 SAMN37672147-rid19624553.guided.26, whole genome shotgun sequence	10869..11306	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNLKJ010000027.1 Salmonella enterica strain PNUSAS388493 SAMN37672147-rid19624553.denovo.30, whole genome shotgun sequence	3981..4111																																																						avrA	ABNLKJ010000009.1	192373..193241	99.195	870	0						
GCA_032433255.1_PDT001916973.1_genomic.fna	Salmonella_enterica	0.5215	191.417 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLKM010000001.1 Salmonella enterica strain PNUSAS388498 SAMN37672158-rid19624533.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLKM010000048.1 Salmonella enterica strain PNUSAS388498 SAMN37672158-rid19624533.guided.34, whole genome shotgun sequence	12400..12837	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLKM010000006.1	174800..175668	99.77	870	0						
GCA_032433275.1_PDT001916972.1_genomic.fna	Salmonella_enterica	0.5223	270.709 KB	7	aroC_2,dnaN_14,hemD_24,hisD_14,purE_37,sucA_19,thrA_8	86	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_37	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B	Detected the SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLKL010000002.1 Salmonella enterica strain PNUSAS388496 SAMN37672161-rid19624523.denovo.02, whole genome shotgun sequence	349805..350242	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLKL010000036.1 Salmonella enterica strain PNUSAS388496 SAMN37672161-rid19624523.guided.32, whole genome shotgun sequence	13409..13846	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032433285.1_PDT001916971.1_genomic.fna	Salmonella_enterica	0.5206	382.77 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLKI010000001.1 Salmonella enterica strain PNUSAS388495 SAMN37672151-rid19624513.denovo.01, whole genome shotgun sequence	383528..383965	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLKI010000002.1	504317..505187	99.196	871	0						
GCA_032433315.1_PDT001916970.1_genomic.fna	Salmonella_enterica	0.5211	329.355 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLKO010000003.1 Salmonella enterica strain PNUSAS388490 SAMN37672169-rid19624503.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLKO010000047.1 Salmonella enterica strain PNUSAS388490 SAMN37672169-rid19624503.guided.27, whole genome shotgun sequence	2242..2679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLKO010000022.1 Salmonella enterica strain PNUSAS388490 SAMN37672169-rid19624503.denovo.22, whole genome shotgun sequence	44712..45354	enterobacteriales	IncFII(S)	100	262 / 262	ABNLKO010000022.1 Salmonella enterica strain PNUSAS388490 SAMN37672169-rid19624503.denovo.22, whole genome shotgun sequence	29366..29627																																																avrA	ABNLKO010000006.1	155215..156083	100	869	0						
GCA_032433335.1_PDT001916969.1_genomic.fna	Salmonella_enterica	0.522	257.54 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLKK010000001.1 Salmonella enterica strain PNUSAS388501 SAMN37672152-rid19624493.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLKK010000041.1 Salmonella enterica strain PNUSAS388501 SAMN37672152-rid19624493.guided.34, whole genome shotgun sequence	2810..3247	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLKK010000003.1	218367..219235	99.77	870	0						
GCA_032433355.1_PDT001916968.1_genomic.fna	Salmonella_enterica	0.5213	400.799 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLKN010000001.1 Salmonella enterica strain PNUSAS388511 SAMN37672163-rid19624483.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLKN010000027.1 Salmonella enterica strain PNUSAS388511 SAMN37672163-rid19624483.guided.17, whole genome shotgun sequence	32484..32921	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLKN010000020.1 Salmonella enterica strain PNUSAS388511 SAMN37672163-rid19624483.denovo.22, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNLKN010000021.1 Salmonella enterica strain PNUSAS388511 SAMN37672163-rid19624483.denovo.23, whole genome shotgun sequence	3407..3668																																																avrA	ABNLKN010000002.1	174740..175609	99.54	870	0						
GCA_032433375.1_PDT001916966.1_genomic.fna	Salmonella_enterica	0.5199	177.241 KB	10	aroC_117,dnaN_295,hemD_10,hisD_100,purE_38,sucA_9,thrA_303	2361	9:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_117	dnaN	100	100	dnaN_295	hemD	100	100	hemD_10	hisD	100	100	hisD_100	purE	100	100	purE_38	sucA	100	100	sucA_9	thrA	100	100	thrA_303	9	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Pensacola		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNLKR010000003.1 Salmonella enterica strain PNUSAS388487 SAMN37672167-rid19624463.denovo.03, whole genome shotgun sequence	193907..194344	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNLKR010000080.1 Salmonella enterica strain PNUSAS388487 SAMN37672167-rid19624463.guided.48, whole genome shotgun sequence	23748..24185	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLKR010000009.1	94102..94971	99.08	870	0						
GCA_032433395.1_PDT001916965.1_genomic.fna	Salmonella_enterica	0.521	430.737 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLKQ010000001.1 Salmonella enterica strain PNUSAS388505 SAMN37672170-rid19624453.denovo.01, whole genome shotgun sequence	524351..524788	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLKQ010000034.1 Salmonella enterica strain PNUSAS388505 SAMN37672170-rid19624453.guided.24, whole genome shotgun sequence	6483..6920	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLKQ010000002.1	506828..507698	99.196	871	0						
GCA_032433415.1_PDT001916967.1_genomic.fna	Salmonella_enterica	0.5213	440.006 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLKP010000001.1 Salmonella enterica strain PNUSAS388499 SAMN37672162-rid19624473.denovo.01, whole genome shotgun sequence	774368..774805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLKP010000026.1 Salmonella enterica strain PNUSAS388499 SAMN37672162-rid19624473.guided.21, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLKP010000020.1 Salmonella enterica strain PNUSAS388499 SAMN37672162-rid19624473.denovo.23, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNLKP010000021.1 Salmonella enterica strain PNUSAS388499 SAMN37672162-rid19624473.denovo.24, whole genome shotgun sequence	3406..3667																																																avrA	ABNLKP010000003.1	175187..176056	99.54	870	0						
GCA_032433435.1_PDT001916963.1_genomic.fna	Salmonella_enterica	0.5204	400.215 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNLKS010000001.1 Salmonella enterica strain PNUSAS388507 SAMN37672150-rid19624433.denovo.01, whole genome shotgun sequence	486955..487392	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNLKS010000024.1 Salmonella enterica strain PNUSAS388507 SAMN37672150-rid19624433.guided.21, whole genome shotgun sequence	7880..8317	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNLKS010000015.1 Salmonella enterica strain PNUSAS388507 SAMN37672150-rid19624433.denovo.15, whole genome shotgun sequence	34957..35490																																																						avrA	ABNLKS010000003.1	573365..574233	99.425	870	0						
GCA_032433455.1_PDT001916964.1_genomic.fna	Salmonella_enterica	0.5213	186.405 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLKU010000001.1 Salmonella enterica strain PNUSAS388489 SAMN37672165-rid19624443.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLKU010000045.1 Salmonella enterica strain PNUSAS388489 SAMN37672165-rid19624443.guided.30, whole genome shotgun sequence	32286..32723	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLKU010000006.1	174641..175509	99.77	870	0						
GCA_032433475.1_PDT001916962.1_genomic.fna	Salmonella_enterica	0.5213	695.793 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNLKT010000001.1 Salmonella enterica strain PNUSAS388491 SAMN37672156-rid19624423.denovo.01, whole genome shotgun sequence	486956..487393	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNLKT010000025.1 Salmonella enterica strain PNUSAS388491 SAMN37672156-rid19624423.guided.20, whole genome shotgun sequence	782..1219	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLKT010000003.1	544607..545475	99.425	870	0						
GCA_032433495.1_PDT001916961.1_genomic.fna	Salmonella_enterica	0.5219	191.426 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLKV010000001.1 Salmonella enterica strain PNUSAS388506 SAMN37672154-rid19624413.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	429/438	ABNLKV010000046.1 Salmonella enterica strain PNUSAS388506 SAMN37672154-rid19624413.guided.37, whole genome shotgun sequence	1..429	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLKV010000002.1	218216..219084	99.77	870	0						
GCA_032433515.1_PDT001916960.1_genomic.fna	Salmonella_enterica	0.5219	441.955 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNLKW010000001.1 Salmonella enterica strain PNUSAS388497 SAMN37672159-rid19624403.denovo.01, whole genome shotgun sequence	387573..388010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNLKW010000031.1 Salmonella enterica strain PNUSAS388497 SAMN37672159-rid19624403.guided.16, whole genome shotgun sequence	42414..42851	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLKW010000003.1	553729..554598	99.655	870	0						
GCA_032433535.1_PDT001916959.1_genomic.fna	Salmonella_enterica	0.5217	718.678 KB	2	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	7	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-55,blaTEM-214,blaTEM-209,blaTEM-206,blaTEM-141,blaTEM-1B,blaCTX-M-55,blaTEM-214,blaTEM-206,blaTEM-141,blaTEM-1B	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLKZ010000001.1 Salmonella enterica strain PNUSAS388500 SAMN37672146-rid19624393.denovo.01, whole genome shotgun sequence	1050303..1050740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLKZ010000026.1 Salmonella enterica strain PNUSAS388500 SAMN37672146-rid19624393.guided.21, whole genome shotgun sequence	8796..9233	Amikacin, Tobramycin	NC_003197	blaCTX-M-55	100	876/876	ABNLKZ010000015.1 Salmonella enterica strain PNUSAS388500 SAMN37672146-rid19624393.denovo.15, whole genome shotgun sequence	42359..43234	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-214	100	740/861	ABNLKZ010000015.1 Salmonella enterica strain PNUSAS388500 SAMN37672146-rid19624393.denovo.15, whole genome shotgun sequence	44016..44755	Unknown Beta-lactam	KP050491	blaTEM-209	100	740/861	ABNLKZ010000015.1 Salmonella enterica strain PNUSAS388500 SAMN37672146-rid19624393.denovo.15, whole genome shotgun sequence	44016..44755	Unknown Beta-lactam	KF240808	blaTEM-206	100	740/861	ABNLKZ010000015.1 Salmonella enterica strain PNUSAS388500 SAMN37672146-rid19624393.denovo.15, whole genome shotgun sequence	44016..44755	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	100	740/861	ABNLKZ010000015.1 Salmonella enterica strain PNUSAS388500 SAMN37672146-rid19624393.denovo.15, whole genome shotgun sequence	44016..44755	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	100	740/861	ABNLKZ010000015.1 Salmonella enterica strain PNUSAS388500 SAMN37672146-rid19624393.denovo.15, whole genome shotgun sequence	44016..44755	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNLKZ010000028.1 Salmonella enterica strain PNUSAS388500 SAMN37672146-rid19624393.guided.24, whole genome shotgun sequence	408..1283	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-214	99.87	746/861	ABNLKZ010000028.1 Salmonella enterica strain PNUSAS388500 SAMN37672146-rid19624393.guided.24, whole genome shotgun sequence	2065..2810	Unknown Beta-lactam	KP050491	blaTEM-206	99.87	746/861	ABNLKZ010000028.1 Salmonella enterica strain PNUSAS388500 SAMN37672146-rid19624393.guided.24, whole genome shotgun sequence	2065..2810	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	99.87	746/861	ABNLKZ010000028.1 Salmonella enterica strain PNUSAS388500 SAMN37672146-rid19624393.guided.24, whole genome shotgun sequence	2065..2810	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	99.87	746/861	ABNLKZ010000028.1 Salmonella enterica strain PNUSAS388500 SAMN37672146-rid19624393.guided.24, whole genome shotgun sequence	2065..2810	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																													gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	ABNLKZ010000002.1	144730..145599	99.31	870	0						
GCA_032433555.1_PDT001916958.1_genomic.fna	Salmonella_enterica	0.5196	234.125 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLKX010000001.1 Salmonella enterica strain PNUSAS388503 SAMN37672148-rid19624383.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLKX010000036.1 Salmonella enterica strain PNUSAS388503 SAMN37672148-rid19624383.guided.27, whole genome shotgun sequence	482..919	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNLKX010000004.1 Salmonella enterica strain PNUSAS388503 SAMN37672148-rid19624383.denovo.04, whole genome shotgun sequence	268047..268469	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNLKX010000039.1 Salmonella enterica strain PNUSAS388503 SAMN37672148-rid19624383.guided.31, whole genome shotgun sequence	2995..3417	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLKX010000002.1	183784..184653	99.195	870	0						
GCA_032433575.1_PDT001916957.1_genomic.fna	Salmonella_enterica	0.5214	404.822 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNLKY010000001.1 Salmonella enterica strain PNUSAS388513 SAMN37672149-rid19624373.denovo.01, whole genome shotgun sequence	486999..487436	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNLKY010000030.1 Salmonella enterica strain PNUSAS388513 SAMN37672149-rid19624373.guided.26, whole genome shotgun sequence	2819..3256	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLKY010000002.1	509485..510353	99.425	870	0						
GCA_032433685.1_PDT001917038.1_genomic.fna	Salmonella_enterica	0.5209	191.426 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFII(pCTU2),pESA2,pXuzhou21	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLLB010000002.1 Salmonella enterica strain PNUSAS388096 SAMN37675436-rid19624703.denovo.02, whole genome shotgun sequence	37883..38320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLLB010000047.1 Salmonella enterica strain PNUSAS388096 SAMN37675436-rid19624703.guided.40, whole genome shotgun sequence	9197..9634	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(pCTU2)	96.71	577 / 577	ABNLLB010000035.1 Salmonella enterica strain PNUSAS388096 SAMN37675436-rid19624703.denovo.36, whole genome shotgun sequence	16472..17048	enterobacteriales	pESA2	98.67	750 / 750	ABNLLB010000035.1 Salmonella enterica strain PNUSAS388096 SAMN37675436-rid19624703.denovo.36, whole genome shotgun sequence	9192..9941		enterobacteriales	pXuzhou21	99.86	720 / 720	ABNLLB010000030.1 Salmonella enterica strain PNUSAS388096 SAMN37675436-rid19624703.denovo.30, whole genome shotgun sequence	23692..24411																																									avrA	ABNLLB010000006.1	83042..83910	99.77	870	0						
GCA_032433705.1_PDT001917042.1_genomic.fna	Salmonella_enterica	0.5213	581.006 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLLA010000001.1 Salmonella enterica strain PNUSAS388067 SAMN37675454-rid19625263.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLLA010000040.1 Salmonella enterica strain PNUSAS388067 SAMN37675454-rid19625263.guided.17, whole genome shotgun sequence	20626..21063	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLLA010000002.1	534910..535780	99.196	871	0						
GCA_032433725.1_PDT001917041.1_genomic.fna	Salmonella_enterica	0.523	407.581 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLLD010000001.1 Salmonella enterica strain PNUSAS388068 SAMN37675455-rid19625253.denovo.01, whole genome shotgun sequence	566661..567098	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNLLD010000031.1 Salmonella enterica strain PNUSAS388068 SAMN37675455-rid19625253.guided.22, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLLD010000003.1	150300..151169	99.655	870	0						
GCA_032433745.1_PDT001917039.1_genomic.fna	Salmonella_enterica	0.5218	194.554 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLLE010000003.1 Salmonella enterica strain PNUSAS388093 SAMN37675453-rid19625243.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLLE010000040.1 Salmonella enterica strain PNUSAS388093 SAMN37675453-rid19625243.guided.22, whole genome shotgun sequence	10371..10808	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLLE010000025.1 Salmonella enterica strain PNUSAS388093 SAMN37675453-rid19625243.denovo.26, whole genome shotgun sequence	44721..45363	enterobacteriales	IncFII(S)	100	262 / 262	ABNLLE010000025.1 Salmonella enterica strain PNUSAS388093 SAMN37675453-rid19625243.denovo.26, whole genome shotgun sequence	29375..29636																																																avrA	ABNLLE010000001.1	446498..447366	100	869	0						
GCA_032433785.1_PDT001917032.1_genomic.fna	Salmonella_enterica	0.5222	192.526 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLLG010000006.1 Salmonella enterica strain PNUSAS388080 SAMN37675427-rid19625193.denovo.06, whole genome shotgun sequence	37883..38320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLLG010000041.1 Salmonella enterica strain PNUSAS388080 SAMN37675427-rid19625193.guided.39, whole genome shotgun sequence	1548..1985	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLLG010000002.1	229469..230337	99.77	870	0						
GCA_032433805.1_PDT001917023.1_genomic.fna	Salmonella_enterica	0.5224	109.439 KB	12	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLLH010000032.1 Salmonella enterica strain PNUSAS388103 SAMN37675447-rid19624683.denovo.32, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNLLH010000067.1 Salmonella enterica strain PNUSAS388103 SAMN37675447-rid19624683.guided.57, whole genome shotgun sequence	3885..4322	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABNLLH010000038.1 Salmonella enterica strain PNUSAS388103 SAMN37675447-rid19624683.denovo.38, whole genome shotgun sequence	26921..27180																																																																	
GCA_032433845.1_PDT001917022.1_genomic.fna	Salmonella_enterica	0.5217	272.454 KB	6	aroC_20,dnaN_4,hemD_23,hisD_14,purE_16,sucA_19,thrA_18	42	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_20	dnaN	100	100	dnaN_4	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_19	thrA	100	100	thrA_18	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLLI010000001.1 Salmonella enterica strain PNUSAS388085 SAMN37675431-rid19625103.denovo.01, whole genome shotgun sequence	136255..136692	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLLI010000046.1 Salmonella enterica strain PNUSAS388085 SAMN37675431-rid19625103.guided.38, whole genome shotgun sequence	2337..2774	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032433905.1_PDT001917057.1_genomic.fna	Salmonella_enterica	0.5207	535.547 KB	4	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	2	ColpVC,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNLLL010000001.1 Salmonella enterica strain PNUSAS388071 SAMN37675459-rid19625393.denovo.01, whole genome shotgun sequence	383900..384337	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNLLL010000024.1 Salmonella enterica strain PNUSAS388071 SAMN37675459-rid19625393.guided.18, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABNLLL010000009.1 Salmonella enterica strain PNUSAS388071 SAMN37675459-rid19625393.denovo.09, whole genome shotgun sequence	166241..166663	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNLLL010000025.1 Salmonella enterica strain PNUSAS388071 SAMN37675459-rid19625393.guided.20, whole genome shotgun sequence	8160..8582	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNLLL010000020.1 Salmonella enterica strain PNUSAS388071 SAMN37675459-rid19625393.denovo.24, whole genome shotgun sequence	805..997	enterobacteriales	IncX1	98.93	374 / 374	ABNLLL010000016.1 Salmonella enterica strain PNUSAS388071 SAMN37675459-rid19625393.denovo.16, whole genome shotgun sequence	6868..7241																																																avrA	ABNLLL010000002.1	518328..519197	99.54	870	0						
GCA_032433925.1_PDT001917056.1_genomic.fna	Salmonella_enterica	0.5195	466.224 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFII(p96A),IncFII(pCoo),IncI2(Delta)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLLN010000001.1 Salmonella enterica strain PNUSAS388083 SAMN37675457-rid19625383.denovo.01, whole genome shotgun sequence	1313208..1313645	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLLN010000032.1 Salmonella enterica strain PNUSAS388083 SAMN37675457-rid19625383.guided.17, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNLLN010000012.1 Salmonella enterica strain PNUSAS388083 SAMN37675457-rid19625383.denovo.12, whole genome shotgun sequence	34944..35477	enterobacteriales	IncFII(pCoo)	96.18	262 / 262	ABNLLN010000013.1 Salmonella enterica strain PNUSAS388083 SAMN37675457-rid19625383.denovo.13, whole genome shotgun sequence	61464..61724		enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABNLLN010000015.1 Salmonella enterica strain PNUSAS388083 SAMN37675457-rid19625383.denovo.16, whole genome shotgun sequence	28630..28951																																									avrA	ABNLLN010000007.1	192358..193228	99.196	871	0						
GCA_032433945.1_PDT001917054.1_genomic.fna	Salmonella_enterica	0.5219	307.722 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_19,thrA_1	679	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLLM010000003.1 Salmonella enterica strain PNUSAS388075 SAMN37675463-rid19625363.denovo.03, whole genome shotgun sequence	314041..314478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLLM010000042.1 Salmonella enterica strain PNUSAS388075 SAMN37675463-rid19625363.guided.30, whole genome shotgun sequence	4023..4460	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLLM010000009.1	102072..102937	98.966	870	0						
GCA_032433955.1_PDT001917049.1_genomic.fna	Salmonella_enterica	0.5216	631.964 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLLO010000001.1 Salmonella enterica strain PNUSAS388089 SAMN37675449-rid19625323.denovo.01, whole genome shotgun sequence	683864..684301	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNLLO010000024.1 Salmonella enterica strain PNUSAS388089 SAMN37675449-rid19625323.guided.18, whole genome shotgun sequence	8349..8786	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNLLO010000012.1 Salmonella enterica strain PNUSAS388089 SAMN37675449-rid19625323.denovo.12, whole genome shotgun sequence	64055..65260	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABNLLO010000026.1 Salmonella enterica strain PNUSAS388089 SAMN37675449-rid19625323.guided.23, whole genome shotgun sequence	1429..2634	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNLLO010000027.1 Salmonella enterica strain PNUSAS388089 SAMN37675449-rid19625323.guided.24, whole genome shotgun sequence	1429..2634	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNLLO010000012.1 Salmonella enterica strain PNUSAS388089 SAMN37675449-rid19625323.denovo.12, whole genome shotgun sequence	71646..71787																																																						avrA	ABNLLO010000002.1	563804..564673	99.77	870	0						
GCA_032433985.1_PDT001917051.1_genomic.fna	Salmonella_enterica	0.5205	430.737 KB	4	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	2	ColpVC,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNLLP010000001.1 Salmonella enterica strain PNUSAS388072 SAMN37675460-rid19625333.denovo.01, whole genome shotgun sequence	383900..384337	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNLLP010000031.1 Salmonella enterica strain PNUSAS388072 SAMN37675460-rid19625333.guided.22, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABNLLP010000016.1 Salmonella enterica strain PNUSAS388072 SAMN37675460-rid19625333.denovo.16, whole genome shotgun sequence	38345..38767	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNLLP010000030.1 Salmonella enterica strain PNUSAS388072 SAMN37675460-rid19625333.guided.21, whole genome shotgun sequence	16185..16607	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNLLP010000021.1 Salmonella enterica strain PNUSAS388072 SAMN37675460-rid19625333.denovo.25, whole genome shotgun sequence	805..997	enterobacteriales	IncX1	98.93	374 / 374	ABNLLP010000018.1 Salmonella enterica strain PNUSAS388072 SAMN37675460-rid19625333.denovo.18, whole genome shotgun sequence	6868..7241																																																avrA	ABNLLP010000002.1	518328..519197	99.54	870	0						
GCA_032434005.1_PDT001917046.1_genomic.fna	Salmonella_enterica	0.5211	266.637 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLLQ010000001.1 Salmonella enterica strain PNUSAS388077 SAMN37675464-rid19625303.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLLQ010000042.1 Salmonella enterica strain PNUSAS388077 SAMN37675464-rid19625303.guided.30, whole genome shotgun sequence	1731..2168	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLLQ010000003.1	175534..176402	99.77	870	0						
GCA_032434025.1_PDT001917044.1_genomic.fna	Salmonella_enterica	0.5215	204.876 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLLS010000001.1 Salmonella enterica strain PNUSAS388090 SAMN37675450-rid19625283.denovo.01, whole genome shotgun sequence	581140..581577	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLLS010000037.1 Salmonella enterica strain PNUSAS388090 SAMN37675450-rid19625283.denovo.41, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNLLS010000037.1 Salmonella enterica strain PNUSAS388090 SAMN37675450-rid19625283.denovo.41, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNLLS010000049.1 Salmonella enterica strain PNUSAS388090 SAMN37675450-rid19625283.guided.39, whole genome shotgun sequence	1901..2338	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLLS010000050.1 Salmonella enterica strain PNUSAS388090 SAMN37675450-rid19625283.guided.43, whole genome shotgun sequence	1935..2771	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNLLS010000050.1 Salmonella enterica strain PNUSAS388090 SAMN37675450-rid19625283.guided.43, whole genome shotgun sequence	1132..1935	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNLLS010000039.1 Salmonella enterica strain PNUSAS388090 SAMN37675450-rid19625283.denovo.45, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNLLS010000051.1 Salmonella enterica strain PNUSAS388090 SAMN37675450-rid19625283.guided.44, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNLLS010000037.1 Salmonella enterica strain PNUSAS388090 SAMN37675450-rid19625283.denovo.41, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNLLS010000050.1 Salmonella enterica strain PNUSAS388090 SAMN37675450-rid19625283.guided.43, whole genome shotgun sequence	256..1071	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNLLS010000032.1 Salmonella enterica strain PNUSAS388090 SAMN37675450-rid19625283.denovo.32, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNLLS010000046.1 Salmonella enterica strain PNUSAS388090 SAMN37675450-rid19625283.guided.33, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNLLS010000002.1	508099..508968	99.885	870	0						
GCA_032434045.1_PDT001917037.1_genomic.fna	Salmonella_enterica	0.5209	287.286 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLLR010000001.1 Salmonella enterica strain PNUSAS388098 SAMN37675438-rid19625233.denovo.01, whole genome shotgun sequence	477683..478120	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNLLR010000036.1 Salmonella enterica strain PNUSAS388098 SAMN37675438-rid19625233.guided.18, whole genome shotgun sequence	5729..6166	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLLR010000004.1	144605..145474	99.31	870	0						
GCA_032434065.1_PDT001917035.1_genomic.fna	Salmonella_enterica	0.5203	708.086 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNLLT010000001.1 Salmonella enterica strain PNUSAS388084 SAMN37675430-rid19625213.denovo.01, whole genome shotgun sequence	1071942..1072379	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNLLT010000023.1 Salmonella enterica strain PNUSAS388084 SAMN37675430-rid19625213.guided.16, whole genome shotgun sequence	20558..20995	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLLT010000002.1	508659..509527	99.425	870	0						
GCA_032434085.1_PDT001917030.1_genomic.fna	Salmonella_enterica	0.5216	229.314 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLLU010000002.1 Salmonella enterica strain PNUSAS388082 SAMN37675429-rid19625173.denovo.02, whole genome shotgun sequence	37883..38320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLLU010000037.1 Salmonella enterica strain PNUSAS388082 SAMN37675429-rid19625173.guided.30, whole genome shotgun sequence	3033..3470	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLLU010000003.1	228887..229755	99.77	870	0						
GCA_032434105.1_PDT001917029.1_genomic.fna	Salmonella_enterica	0.5112	228.765 KB	8	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNLLY010000001.1 Salmonella enterica strain PNUSAS388095 SAMN37675435-rid19625163.denovo.01, whole genome shotgun sequence	243617..244054	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNLLY010000044.1 Salmonella enterica strain PNUSAS388095 SAMN37675435-rid19625163.guided.37, whole genome shotgun sequence	3647..4084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNLLY010000035.1 Salmonella enterica strain PNUSAS388095 SAMN37675435-rid19625163.denovo.38, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNLLY010000036.1 Salmonella enterica strain PNUSAS388095 SAMN37675435-rid19625163.denovo.39, whole genome shotgun sequence	2528..2639																																																avrA	ABNLLY010000010.1	39350..40218	99.425	870	0						
GCA_032434125.1_PDT001917025.1_genomic.fna	Salmonella_enterica	0.5224	443.699 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLLW010000001.1 Salmonella enterica strain PNUSAS388100 SAMN37675444-rid19625123.denovo.01, whole genome shotgun sequence	634023..634460	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNLLW010000022.1 Salmonella enterica strain PNUSAS388100 SAMN37675444-rid19625123.guided.18, whole genome shotgun sequence	8063..8500	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLLW010000002.1	563412..564281	99.77	870	0						
GCA_032434135.1_PDT001917020.1_genomic.fna	Salmonella_enterica	0.5213	278.672 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLLV010000001.1 Salmonella enterica strain PNUSAS388694 SAMN37675441-rid19625083.denovo.01, whole genome shotgun sequence	349019..349456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLLV010000048.1 Salmonella enterica strain PNUSAS388694 SAMN37675441-rid19625083.guided.31, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNLLV010000031.1 Salmonella enterica strain PNUSAS388694 SAMN37675441-rid19625083.denovo.34, whole genome shotgun sequence	5918..7123	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNLLV010000049.1 Salmonella enterica strain PNUSAS388694 SAMN37675441-rid19625083.guided.33, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABNLLV010000002.1	540570..541439	99.885	870	0						
GCA_032434165.1_PDT001917028.1_genomic.fna	Salmonella_enterica	0.5198	188.544 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,blaCARB-2,blaCARB-2,sul1,sul1	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLLX010000002.1 Salmonella enterica strain PNUSAS388693 SAMN37675440-rid19625153.denovo.02, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLLX010000062.1 Salmonella enterica strain PNUSAS388693 SAMN37675440-rid19625153.guided.27, whole genome shotgun sequence	21111..21548	Amikacin, Tobramycin	NC_003197	blaCARB-2	100	867/867	ABNLLX010000007.1 Salmonella enterica strain PNUSAS388693 SAMN37675440-rid19625153.denovo.07, whole genome shotgun sequence	133409..134275	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNLLX010000065.1 Salmonella enterica strain PNUSAS388693 SAMN37675440-rid19625153.guided.43, whole genome shotgun sequence	4684..5550	Ampicillin, Amoxicillin, Piperacillin	M69058	sul1	100	840/840	ABNLLX010000007.1 Salmonella enterica strain PNUSAS388693 SAMN37675440-rid19625153.denovo.07, whole genome shotgun sequence	134833..135672	Sulfamethoxazole	U12338	sul1	100	840/840	ABNLLX010000065.1 Salmonella enterica strain PNUSAS388693 SAMN37675440-rid19625153.guided.43, whole genome shotgun sequence	6108..6947	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFIB(S)	100	643 / 643	ABNLLX010000033.1 Salmonella enterica strain PNUSAS388693 SAMN37675440-rid19625153.denovo.34, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNLLX010000033.1 Salmonella enterica strain PNUSAS388693 SAMN37675440-rid19625153.denovo.34, whole genome shotgun sequence	9325..9586		enterobacteriales	IncI(Gamma)	100	137 / 141	ABNLLX010000014.1 Salmonella enterica strain PNUSAS388693 SAMN37675440-rid19625153.denovo.14, whole genome shotgun sequence	15508..15644																																									avrA	ABNLLX010000001.1	506776..507645	99.885	870	0						
GCA_032434185.1_PDT001917019.1_genomic.fna	Salmonella_enterica	0.5213	406.081 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLMA010000001.1 Salmonella enterica strain PNUSAS388086 SAMN37675432-rid19625073.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLMA010000022.1 Salmonella enterica strain PNUSAS388086 SAMN37675432-rid19625073.guided.17, whole genome shotgun sequence	20714..21151	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLMA010000009.1 Salmonella enterica strain PNUSAS388086 SAMN37675432-rid19625073.denovo.09, whole genome shotgun sequence	184322..184964	enterobacteriales	IncFII(S)	100	262 / 262	ABNLMA010000017.1 Salmonella enterica strain PNUSAS388086 SAMN37675432-rid19625073.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABNLMA010000002.1	553635..554504	99.54	870	0						
GCA_032434265.1_PDT001917055.1_genomic.fna	Salmonella_enterica	0.5228	367.381 KB	4	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLME010000001.1 Salmonella enterica strain PNUSAS388069 SAMN37675456-rid19625373.denovo.01, whole genome shotgun sequence	791116..791553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLME010000030.1 Salmonella enterica strain PNUSAS388069 SAMN37675456-rid19625373.guided.24, whole genome shotgun sequence	5025..5462	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032434285.1_PDT001917043.1_genomic.fna	Salmonella_enterica	0.5221	209.278 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLMD010000001.1 Salmonella enterica strain PNUSAS388079 SAMN37675467-rid19625273.denovo.01, whole genome shotgun sequence	37883..38320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLMD010000036.1 Salmonella enterica strain PNUSAS388079 SAMN37675467-rid19625273.guided.34, whole genome shotgun sequence	3401..3838	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLMD010000002.1	228520..229388	99.77	870	0						
GCA_032434325.1_PDT001917031.1_genomic.fna	Salmonella_enterica	0.5218	648.545 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNLMG010000001.1 Salmonella enterica strain PNUSAS388102 SAMN37675446-rid19625183.denovo.01, whole genome shotgun sequence	401140..401577	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNLMG010000027.1 Salmonella enterica strain PNUSAS388102 SAMN37675446-rid19625183.guided.20, whole genome shotgun sequence	2890..3327	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNLMG010000015.1 Salmonella enterica strain PNUSAS388102 SAMN37675446-rid19625183.denovo.15, whole genome shotgun sequence	30267..30408																																																						avrA	ABNLMG010000003.1	553815..554684	99.77	870	0						
GCA_032434345.1_PDT001916974.1_genomic.fna	Salmonella_enterica	0.5218	208.512 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLMH010000001.1 Salmonella enterica strain PNUSAS388509 SAMN37672171-rid19624543.denovo.01, whole genome shotgun sequence	233303..233740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLMH010000044.1 Salmonella enterica strain PNUSAS388509 SAMN37672171-rid19624543.guided.38, whole genome shotgun sequence	4506..4943	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLMH010000003.1	208058..208926	99.77	870	0						
GCA_032434545.1_PDT001917131.1_genomic.fna	Salmonella_enterica	0.5221	396.607 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLMT010000001.1 Salmonella enterica strain PNUSAS388775 SAMN37684012-rid19625693.denovo.01, whole genome shotgun sequence	684219..684656	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNLMT010000026.1 Salmonella enterica strain PNUSAS388775 SAMN37684012-rid19625693.guided.17, whole genome shotgun sequence	1770..2207	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNLMT010000020.1 Salmonella enterica strain PNUSAS388775 SAMN37684012-rid19625693.denovo.23, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNLMT010000027.1 Salmonella enterica strain PNUSAS388775 SAMN37684012-rid19625693.guided.22, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNLMT010000020.1 Salmonella enterica strain PNUSAS388775 SAMN37684012-rid19625693.denovo.23, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNLMT010000027.1 Salmonella enterica strain PNUSAS388775 SAMN37684012-rid19625693.guided.22, whole genome shotgun sequence	2044..2174																																																avrA	ABNLMT010000006.1	182896..183765	99.77	870	0						
GCA_032434585.1_PDT001917139.1_genomic.fna	Salmonella_enterica	0.5226	481.028 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNLMU010000001.1 Salmonella enterica strain PNUSAS388786 SAMN37683972-rid19625723.denovo.01, whole genome shotgun sequence	666961..667398	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNLMU010000030.1 Salmonella enterica strain PNUSAS388786 SAMN37683972-rid19625723.guided.21, whole genome shotgun sequence	1422..1859	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLMU010000002.1	588439..589308	99.31	870	0						
GCA_032434625.1_PDT001917121.1_genomic.fna	Salmonella_enterica	0.5209	504.555 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLMX010000001.1 Salmonella enterica strain PNUSAS388783 SAMN37683980-rid19625643.denovo.01, whole genome shotgun sequence	477583..478020	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLMX010000028.1 Salmonella enterica strain PNUSAS388783 SAMN37683980-rid19625643.guided.19, whole genome shotgun sequence	8213..8650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLMX010000002.1	551495..552364	99.195	870	0						
GCA_032434645.1_PDT001917109.1_genomic.fna	Salmonella_enterica	0.5205	484.733 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLMV010000002.1 Salmonella enterica strain PNUSAS388767 SAMN37683982-rid19625583.denovo.02, whole genome shotgun sequence	416526..416963	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLMV010000022.1 Salmonella enterica strain PNUSAS388767 SAMN37683982-rid19625583.guided.18, whole genome shotgun sequence	2730..3167	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLMV010000001.1	559223..560092	99.425	870	0						
GCA_032434665.1_PDT001917107.1_genomic.fna	Salmonella_enterica	0.5192	604.681 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncFII(p96A)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNLMZ010000001.1 Salmonella enterica strain PNUSAS388770 SAMN37683967-rid19625573.denovo.01, whole genome shotgun sequence	771551..771988	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNLMZ010000025.1 Salmonella enterica strain PNUSAS388770 SAMN37683967-rid19625573.guided.14, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNLMZ010000017.1 Salmonella enterica strain PNUSAS388770 SAMN37683967-rid19625573.denovo.20, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNLMZ010000027.1 Salmonella enterica strain PNUSAS388770 SAMN37683967-rid19625573.guided.23, whole genome shotgun sequence	533..1177	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNLMZ010000017.1 Salmonella enterica strain PNUSAS388770 SAMN37683967-rid19625573.denovo.20, whole genome shotgun sequence	1519..1649	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNLMZ010000018.1 Salmonella enterica strain PNUSAS388770 SAMN37683967-rid19625573.denovo.21, whole genome shotgun sequence	239..369		enterobacteriales	IncFII(p96A)	98.88	534 / 534	ABNLMZ010000012.1 Salmonella enterica strain PNUSAS388770 SAMN37683967-rid19625573.denovo.13, whole genome shotgun sequence	16804..17337																																									avrA	ABNLMZ010000002.1	561368..562237	99.425	870	0						
GCA_032434685.1_PDT001917111.1_genomic.fna	Salmonella_enterica	0.5215	715.474 KB	2	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNLMW010000001.1 Salmonella enterica strain PNUSAS388777 SAMN37684009-rid19625593.denovo.01, whole genome shotgun sequence	675650..676087	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNLMW010000024.1 Salmonella enterica strain PNUSAS388777 SAMN37684009-rid19625593.guided.17, whole genome shotgun sequence	2595..3032	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII	98.08	261 / 261	ABNLMW010000010.1 Salmonella enterica strain PNUSAS388777 SAMN37684009-rid19625593.denovo.10, whole genome shotgun sequence	10229..10488																																																																	
GCA_032434705.1_PDT001917106.1_genomic.fna	Salmonella_enterica	0.5213	489.933 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.S83Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLMY010000001.1 Salmonella enterica strain PNUSAS388785 SAMN37683973-rid19625563.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLMY010000011.1 Salmonella enterica strain PNUSAS388785 SAMN37683973-rid19625563.denovo.11, whole genome shotgun sequence	40529..41171	enterobacteriales	IncFII(S)	100	262 / 262	ABNLMY010000014.1 Salmonella enterica strain PNUSAS388785 SAMN37683973-rid19625563.denovo.16, whole genome shotgun sequence	3392..3653																																																avrA	ABNLMY010000002.1	553092..553961	99.54	870	0						
GCA_032434725.1_PDT001917104.1_genomic.fna	Salmonella_enterica	0.5223	470.162 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLNA010000001.1 Salmonella enterica strain PNUSAS388743 SAMN37683599-rid19625543.denovo.01, whole genome shotgun sequence	960565..961002	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNLNA010000029.1 Salmonella enterica strain PNUSAS388743 SAMN37683599-rid19625543.guided.23, whole genome shotgun sequence	2391..2828	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLNA010000002.1	563774..564643	99.77	870	0						
GCA_032434745.1_PDT001917096.1_genomic.fna	Salmonella_enterica	0.5224	392.732 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNLNC010000001.1 Salmonella enterica strain PNUSAS388747 SAMN37683591-rid19625503.denovo.01, whole genome shotgun sequence	458996..459433	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNLNC010000020.1 Salmonella enterica strain PNUSAS388747 SAMN37683591-rid19625503.guided.19, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLNC010000002.1	174128..174986	98.506	870	0						
GCA_032434765.1_PDT001917101.1_genomic.fna	Salmonella_enterica	0.5205	433.55 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLNB010000001.1 Salmonella enterica strain PNUSAS388744 SAMN37683595-rid19625533.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLNB010000025.1 Salmonella enterica strain PNUSAS388744 SAMN37683595-rid19625533.guided.20, whole genome shotgun sequence	19900..20337	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABNLNB010000017.1 Salmonella enterica strain PNUSAS388744 SAMN37683595-rid19625533.denovo.17, whole genome shotgun sequence	32011..32384																																																						avrA	ABNLNB010000002.1	553474..554343	99.54	870	0						
GCA_032434785.1_PDT001917091.1_genomic.fna	Salmonella_enterica	0.522	446.06 KB	3	aroC_559,dnaN_64,hemD_40,hisD_96,purE_448,sucA_186,thrA_553	2794	7:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_559	dnaN	100	100	dnaN_64	hemD	100	100	hemD_40	hisD	100	100	hisD_96	purE	100	100	purE_448	sucA	100	100	sucA_186	thrA	100	100	thrA_553	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLND010000001.1 Salmonella enterica strain PNUSAS388698 SAMN37682798-rid19625473.denovo.01, whole genome shotgun sequence	642829..643266	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLND010000028.1 Salmonella enterica strain PNUSAS388698 SAMN37682798-rid19625473.guided.22, whole genome shotgun sequence	5082..5519	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNLND010000022.1 Salmonella enterica strain PNUSAS388698 SAMN37682798-rid19625473.denovo.27, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNLND010000030.1 Salmonella enterica strain PNUSAS388698 SAMN37682798-rid19625473.guided.26, whole genome shotgun sequence	1552..2196	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNLND010000022.1 Salmonella enterica strain PNUSAS388698 SAMN37682798-rid19625473.denovo.27, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNLND010000030.1 Salmonella enterica strain PNUSAS388698 SAMN37682798-rid19625473.guided.26, whole genome shotgun sequence	896..1026																																																											
GCA_032434805.1_PDT001917085.1_genomic.fna	Salmonella_enterica	0.5218	413.348 KB	5	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNLNF010000002.1 Salmonella enterica strain PNUSAS388717 SAMN37682763-rid19625433.denovo.02, whole genome shotgun sequence	145589..146026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNLNF010000028.1 Salmonella enterica strain PNUSAS388717 SAMN37682763-rid19625433.guided.15, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLNF010000006.1	173873..174742	99.77	870	0						
GCA_032434825.1_PDT001917084.1_genomic.fna	Salmonella_enterica	0.5212	275.207 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLNE010000001.1 Salmonella enterica strain PNUSAS388718 SAMN37682759-rid19625423.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLNE010000046.1 Salmonella enterica strain PNUSAS388718 SAMN37682759-rid19625423.guided.16, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLNE010000003.1	208048..208916	99.77	870	0						
GCA_032434845.1_PDT001917036.1_genomic.fna	Salmonella_enterica	0.5186	201.297 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLNG010000006.1 Salmonella enterica strain PNUSAS388097 SAMN37675437-rid19625223.denovo.06, whole genome shotgun sequence	72520..72957	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNLNG010000047.1 Salmonella enterica strain PNUSAS388097 SAMN37675437-rid19625223.guided.36, whole genome shotgun sequence	2408..2845	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNLNG010000037.1 Salmonella enterica strain PNUSAS388097 SAMN37675437-rid19625223.denovo.40, whole genome shotgun sequence	4436..5078																																																																	
GCA_032434865.1_PDT001917021.1_genomic.fna	Salmonella_enterica	0.5218	229.313 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLNI010000002.1 Salmonella enterica strain PNUSAS388087 SAMN37675433-rid19625093.denovo.02, whole genome shotgun sequence	37883..38320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLNI010000038.1 Salmonella enterica strain PNUSAS388087 SAMN37675433-rid19625093.guided.30, whole genome shotgun sequence	20997..21434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLNI010000003.1	137709..138577	99.77	870	0						
GCA_032434885.1_PDT001917026.1_genomic.fna	Salmonella_enterica	0.5211	406.407 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	7	aac(6')-Iaa,aadA5,aac(6')-Iaa,aadA5,blaTEM-1B,blaTEM-1B,fosA,fosA,floR,floR,tet(A),tet(A),dfrA17,dfrA17	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLNH010000001.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aadA5	100	789/789	ABNLNH010000018.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.denovo.18, whole genome shotgun sequence	580..1368	Spectinomycin, Streptomycin	AF137361	aac(6')-Iaa	96.35	438/438	ABNLNH010000033.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA5	100	789/789	ABNLNH010000036.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.guided.30, whole genome shotgun sequence	2908..3696	Spectinomycin, Streptomycin	AF137361	blaTEM-1B	100	861/861	ABNLNH010000014.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.denovo.14, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNLNH010000035.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.guided.28, whole genome shotgun sequence	3562..4422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	fosA	95.07	426/426	ABNLNH010000018.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.denovo.18, whole genome shotgun sequence	5426..5851	Fosfomycin	M85195	fosA	95.07	426/426	ABNLNH010000038.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.guided.32, whole genome shotgun sequence	1150..1575	Fosfomycin	M85195	floR	98.19	1214/1215	ABNLNH010000021.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.denovo.24, whole genome shotgun sequence	2613..3826	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNLNH010000037.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.guided.31, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	tet(A)	100	1275/1275	ABNLNH010000021.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.denovo.24, whole genome shotgun sequence	738..2012	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNLNH010000039.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.guided.33, whole genome shotgun sequence	779..2053	Doxycycline, Tetracycline	AF534183	dfrA17	100	474/474	ABNLNH010000018.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.denovo.18, whole genome shotgun sequence	1499..1972	Trimethoprim	FJ460238	dfrA17	100	474/474	ABNLNH010000036.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.guided.30, whole genome shotgun sequence	2304..2777	Trimethoprim	FJ460238																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLNH010000019.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNLNH010000022.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.denovo.25, whole genome shotgun sequence	3351..3612		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNLNH010000014.1 Salmonella enterica strain PNUSAS388101 SAMN37675445-rid19625133.denovo.14, whole genome shotgun sequence	11121..11262																																									avrA	ABNLNH010000002.1	553193..554062	99.54	870	0						
GCA_032435145.1_PDT001917145.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLNY010000001.1 Salmonella enterica strain PNUSAS388780 SAMN37683984-rid19626103.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLNY010000025.1 Salmonella enterica strain PNUSAS388780 SAMN37683984-rid19626103.guided.20, whole genome shotgun sequence	344..781	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLNY010000012.1 Salmonella enterica strain PNUSAS388780 SAMN37683984-rid19626103.denovo.12, whole genome shotgun sequence	20050..20692	enterobacteriales	IncFII(S)	100	262 / 262	ABNLNY010000015.1 Salmonella enterica strain PNUSAS388780 SAMN37683984-rid19626103.denovo.16, whole genome shotgun sequence	3398..3659																																																avrA	ABNLNY010000002.1	553636..554505	99.54	870	0						
GCA_032435165.1_PDT001917149.1_genomic.fna	Salmonella_enterica	0.5196	398.7 KB	5	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncFII(p96A)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNLNW010000001.1 Salmonella enterica strain PNUSAS388789 SAMN37683969-rid19625783.denovo.01, whole genome shotgun sequence	692482..692919	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLNW010000024.1 Salmonella enterica strain PNUSAS388789 SAMN37683969-rid19625783.denovo.26, whole genome shotgun sequence	5947..6783	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNLNW010000024.1 Salmonella enterica strain PNUSAS388789 SAMN37683969-rid19625783.denovo.26, whole genome shotgun sequence	4916..5729	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin	V00359	aph(3'')-Ib	100	804/804	ABNLNW010000024.1 Salmonella enterica strain PNUSAS388789 SAMN37683969-rid19625783.denovo.26, whole genome shotgun sequence	6783..7586	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNLNW010000043.1 Salmonella enterica strain PNUSAS388789 SAMN37683969-rid19625783.guided.28, whole genome shotgun sequence	1312..2148	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNLNW010000043.1 Salmonella enterica strain PNUSAS388789 SAMN37683969-rid19625783.guided.28, whole genome shotgun sequence	2366..3179	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin	V00359	aph(3'')-Ib	100	804/804	ABNLNW010000043.1 Salmonella enterica strain PNUSAS388789 SAMN37683969-rid19625783.guided.28, whole genome shotgun sequence	509..1312	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNLNW010000046.1 Salmonella enterica strain PNUSAS388789 SAMN37683969-rid19625783.guided.36, whole genome shotgun sequence	221..658	Amikacin, Tobramycin	NC_003197	sul2	99.88	816/816	ABNLNW010000006.1 Salmonella enterica strain PNUSAS388789 SAMN37683969-rid19625783.denovo.06, whole genome shotgun sequence	346212..347027	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNLNW010000042.1 Salmonella enterica strain PNUSAS388789 SAMN37683969-rid19625783.guided.25, whole genome shotgun sequence	11914..12729	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNLNW010000025.1 Salmonella enterica strain PNUSAS388789 SAMN37683969-rid19625783.denovo.27, whole genome shotgun sequence	1194..2399	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNLNW010000045.1 Salmonella enterica strain PNUSAS388789 SAMN37683969-rid19625783.guided.31, whole genome shotgun sequence	1596..2801	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNLNW010000026.1 Salmonella enterica strain PNUSAS388789 SAMN37683969-rid19625783.denovo.29, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNLNW010000027.1 Salmonella enterica strain PNUSAS388789 SAMN37683969-rid19625783.denovo.32, whole genome shotgun sequence	2528..2639		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNLNW010000021.1 Salmonella enterica strain PNUSAS388789 SAMN37683969-rid19625783.denovo.21, whole genome shotgun sequence	20872..21405																																									avrA	ABNLNW010000010.1	148277..149145	99.655	869	0						
GCA_032435185.1_PDT001917141.1_genomic.fna	Salmonella_enterica	0.5229	397.314 KB	5	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLNX010000006.1 Salmonella enterica strain PNUSAS388774 SAMN37684013-rid19625733.denovo.06, whole genome shotgun sequence	170344..170781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.35	425/438	ABNLNX010000043.1 Salmonella enterica strain PNUSAS388774 SAMN37684013-rid19625733.guided.25, whole genome shotgun sequence	9958..10382	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032435205.1_PDT001917130.1_genomic.fna	Salmonella_enterica	0.5213	397.887 KB	4	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	Col(pHAD28),Col440I,ColRNAI,IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLNZ010000003.1 Salmonella enterica strain PNUSAS388766 SAMN37683985-rid19626023.denovo.03, whole genome shotgun sequence	500194..500631	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.19	387/438	ABNLNZ010000038.1 Salmonella enterica strain PNUSAS388766 SAMN37683985-rid19626023.guided.25, whole genome shotgun sequence	1..387	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNLNZ010000028.1 Salmonella enterica strain PNUSAS388766 SAMN37683985-rid19626023.denovo.31, whole genome shotgun sequence	371..501	enterobacteriales	Col440I	91.74	109 / 114	ABNLNZ010000029.1 Salmonella enterica strain PNUSAS388766 SAMN37683985-rid19626023.denovo.32, whole genome shotgun sequence	2246..2354		enterobacteriales	ColRNAI	90.08	131 / 130	ABNLNZ010000026.1 Salmonella enterica strain PNUSAS388766 SAMN37683985-rid19626023.denovo.29, whole genome shotgun sequence	3981..4111		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNLNZ010000016.1 Salmonella enterica strain PNUSAS388766 SAMN37683985-rid19626023.denovo.16, whole genome shotgun sequence	5788..5929																																													
GCA_032435225.1_PDT001917150.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLNV010000001.1 Salmonella enterica strain PNUSAS388771 SAMN37684016-rid19626123.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLNV010000026.1 Salmonella enterica strain PNUSAS388771 SAMN37684016-rid19626123.guided.16, whole genome shotgun sequence	7790..8227	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLNV010000012.1 Salmonella enterica strain PNUSAS388771 SAMN37684016-rid19626123.denovo.13, whole genome shotgun sequence	28369..29011	enterobacteriales	IncFII(S)	100	262 / 262	ABNLNV010000016.1 Salmonella enterica strain PNUSAS388771 SAMN37684016-rid19626123.denovo.19, whole genome shotgun sequence	3318..3579																																																avrA	ABNLNV010000002.1	553636..554505	99.54	870	0						
GCA_032435245.1_PDT001917128.1_genomic.fna	Salmonella_enterica	0.5211	490.139 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLOC010000001.1 Salmonella enterica strain PNUSAS388792 SAMN37684006-rid19626013.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLOC010000026.1 Salmonella enterica strain PNUSAS388792 SAMN37684006-rid19626013.guided.17, whole genome shotgun sequence	11059..11496	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLOC010000012.1 Salmonella enterica strain PNUSAS388792 SAMN37684006-rid19626013.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNLOC010000015.1 Salmonella enterica strain PNUSAS388792 SAMN37684006-rid19626013.denovo.18, whole genome shotgun sequence	3372..3633																																																avrA	ABNLOC010000002.1	585481..586350	99.54	870	0						
GCA_032435265.1_PDT001917127.1_genomic.fna	Salmonella_enterica	0.521	363.494 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLOA010000003.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.denovo.03, whole genome shotgun sequence	159424..159861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLOA010000019.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.denovo.19, whole genome shotgun sequence	8324..9160	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNLOA010000019.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.denovo.19, whole genome shotgun sequence	9160..9963	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNLOA010000039.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.guided.29, whole genome shotgun sequence	5134..5571	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	99.88	804/804	ABNLOA010000040.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.guided.30, whole genome shotgun sequence	5550..6353	Streptomycin	AF321551	aph(3'')-Ib	100	804/804	ABNLOA010000041.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.guided.31, whole genome shotgun sequence	5550..6353	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNLOA010000044.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.guided.38, whole genome shotgun sequence	70..906	Streptomycin	M28829	aph(6)-Id	99.88	837/837	ABNLOA010000045.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.guided.39, whole genome shotgun sequence	70..906	Streptomycin	M28829	blaCMY-2	100	1146/1146	ABNLOA010000019.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.denovo.19, whole genome shotgun sequence	37873..39018	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNLOA010000036.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.guided.23, whole genome shotgun sequence	22401..23546	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABNLOA010000019.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.denovo.19, whole genome shotgun sequence	3975..5188	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNLOA010000042.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.guided.34, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNLOA010000019.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.denovo.19, whole genome shotgun sequence	10024..10839	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNLOA010000040.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.guided.30, whole genome shotgun sequence	4674..5489	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNLOA010000041.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.guided.31, whole genome shotgun sequence	4674..5489	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNLOA010000019.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.denovo.19, whole genome shotgun sequence	5789..7063	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNLOA010000043.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.guided.37, whole genome shotgun sequence	642..1916	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNLOA010000020.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.denovo.20, whole genome shotgun sequence	17492..17908	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNLOA010000018.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.denovo.18, whole genome shotgun sequence	29465..29724		enterobacteriales	IncX1	98.66	374 / 374	ABNLOA010000024.1 Salmonella enterica strain PNUSAS388769 SAMN37683968-rid19625673.denovo.27, whole genome shotgun sequence	8876..9249																																									avrA	ABNLOA010000007.1	173371..174239	99.54	870	0						
GCA_032435285.1_PDT001917122.1_genomic.fna	Salmonella_enterica	0.5207	391.749 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLOB010000001.1 Salmonella enterica strain PNUSAS388779 SAMN37683988-rid19625983.denovo.01, whole genome shotgun sequence	563827..564264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLOB010000029.1 Salmonella enterica strain PNUSAS388779 SAMN37683988-rid19625983.guided.24, whole genome shotgun sequence	278..715	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLOB010000011.1	140470..141338	99.195	870	0						
GCA_032435305.1_PDT001917119.1_genomic.fna	Salmonella_enterica	0.5218	417.931 KB	5	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNLOD010000011.1 Salmonella enterica strain PNUSAS388765 SAMN37683986-rid19625633.denovo.11, whole genome shotgun sequence	144834..145271	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNLOD010000037.1 Salmonella enterica strain PNUSAS388765 SAMN37683986-rid19625633.guided.20, whole genome shotgun sequence	2895..3332	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNLOD010000019.1 Salmonella enterica strain PNUSAS388765 SAMN37683986-rid19625633.denovo.22, whole genome shotgun sequence	239..369																																																						avrA	ABNLOD010000005.1	140114..140983	99.425	870	0						
GCA_032435325.1_PDT001917118.1_genomic.fna	Salmonella_enterica	0.5204	391.756 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLOE010000001.1 Salmonella enterica strain PNUSAS388787 SAMN37683971-rid19625963.denovo.01, whole genome shotgun sequence	561832..562269	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLOE010000034.1 Salmonella enterica strain PNUSAS388787 SAMN37683971-rid19625963.guided.23, whole genome shotgun sequence	9059..9496	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLOE010000012.1	140470..141338	99.195	870	0						
GCA_032435345.1_PDT001917112.1_genomic.fna	Salmonella_enterica	0.5218	395.109 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNLOF010000003.1 Salmonella enterica strain PNUSAS388793 SAMN37684005-rid19625933.denovo.03, whole genome shotgun sequence	398418..398855	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNLOF010000031.1 Salmonella enterica strain PNUSAS388793 SAMN37684005-rid19625933.guided.25, whole genome shotgun sequence	2866..3303	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLOF010000002.1	120640..121509	98.851	870	0						
GCA_032435365.1_PDT001917099.1_genomic.fna	Salmonella_enterica	0.5226	203.484 KB	7	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLOG010000001.1 Salmonella enterica strain PNUSAS388745 SAMN37683596-rid19625523.denovo.01, whole genome shotgun sequence	396198..396635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLOG010000038.1 Salmonella enterica strain PNUSAS388745 SAMN37683596-rid19625523.guided.32, whole genome shotgun sequence	301..738	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032436035.1_PDT001917140.1_genomic.fna	Salmonella_enterica	0.5219	406.007 KB	4	aroC_42,dnaN_11,hemD_48,hisD_149,purE_12,sucA_13,thrA_4	1575	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLOR010000001.1 Salmonella enterica strain PNUSAS388791 SAMN37684007-rid19626083.denovo.01, whole genome shotgun sequence	148198..148635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLOR010000039.1 Salmonella enterica strain PNUSAS388791 SAMN37684007-rid19626083.guided.24, whole genome shotgun sequence	6518..6955	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNLOR010000020.1 Salmonella enterica strain PNUSAS388791 SAMN37684007-rid19626083.denovo.20, whole genome shotgun sequence	10205..10847																																																																	
GCA_032436085.1_PDT001917125.1_genomic.fna	Salmonella_enterica	0.5223	271.704 KB	5	aroC_5,dnaN_14,hemD_21,hisD_9,purE_6,sucA_12,thrA_17	49	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLOV010000001.1 Salmonella enterica strain PNUSAS388778 SAMN37683989-rid19626003.denovo.01, whole genome shotgun sequence	524074..524511	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLOV010000063.1 Salmonella enterica strain PNUSAS388778 SAMN37683989-rid19626003.guided.36, whole genome shotgun sequence	3081..3518	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLOV010000002.1	176186..177055	99.54	870	0						
GCA_032436125.1_PDT001917129.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLOS010000001.1 Salmonella enterica strain PNUSAS388784 SAMN37683974-rid19625683.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLOS010000022.1 Salmonella enterica strain PNUSAS388784 SAMN37683974-rid19625683.guided.18, whole genome shotgun sequence	2855..3292	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLOS010000011.1 Salmonella enterica strain PNUSAS388784 SAMN37683974-rid19625683.denovo.12, whole genome shotgun sequence	48503..49145	enterobacteriales	IncFII(S)	100	262 / 262	ABNLOS010000011.1 Salmonella enterica strain PNUSAS388784 SAMN37683974-rid19625683.denovo.12, whole genome shotgun sequence	4250..4511																																																avrA	ABNLOS010000002.1	553636..554505	99.54	870	0						
GCA_032436175.1_PDT001917124.1_genomic.fna	Salmonella_enterica	0.5211	489.667 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLOU010000001.1 Salmonella enterica strain PNUSAS388776 SAMN37684011-rid19625653.denovo.01, whole genome shotgun sequence	815005..815442	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLOU010000025.1 Salmonella enterica strain PNUSAS388776 SAMN37684011-rid19625653.guided.16, whole genome shotgun sequence	8357..8794	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLOU010000002.1	584141..585010	99.54	870	0						
GCA_032436235.1_PDT001917110.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLOX010000001.1 Salmonella enterica strain PNUSAS388773 SAMN37684014-rid19625923.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLOX010000026.1 Salmonella enterica strain PNUSAS388773 SAMN37684014-rid19625923.guided.21, whole genome shotgun sequence	125..562	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLOX010000012.1 Salmonella enterica strain PNUSAS388773 SAMN37684014-rid19625923.denovo.13, whole genome shotgun sequence	20800..21442	enterobacteriales	IncFII(S)	100	262 / 262	ABNLOX010000016.1 Salmonella enterica strain PNUSAS388773 SAMN37684014-rid19625923.denovo.18, whole genome shotgun sequence	3398..3659																																																avrA	ABNLOX010000002.1	553636..554505	99.54	870	0						
GCA_032436245.1_PDT001917113.1_genomic.fna	Salmonella_enterica	0.5213	489.907 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLOY010000001.1 Salmonella enterica strain PNUSAS388790 SAMN37684008-rid19625943.denovo.01, whole genome shotgun sequence	162730..163167	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLOY010000016.1 Salmonella enterica strain PNUSAS388790 SAMN37684008-rid19625943.denovo.16, whole genome shotgun sequence	3045..3687	enterobacteriales	IncFII(S)	100	262 / 262	ABNLOY010000017.1 Salmonella enterica strain PNUSAS388790 SAMN37684008-rid19625943.denovo.18, whole genome shotgun sequence	3377..3638																																																avrA	ABNLOY010000002.1	584148..585017	99.54	870	0						
GCA_032436255.1_PDT001917115.1_genomic.fna	Salmonella_enterica	0.5221	723.706 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNLPA010000001.1 Salmonella enterica strain PNUSAS388794 SAMN37683979-rid19625953.denovo.01, whole genome shotgun sequence	687395..687832	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNLPA010000031.1 Salmonella enterica strain PNUSAS388794 SAMN37683979-rid19625953.guided.19, whole genome shotgun sequence	1294..1731	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNLPA010000016.1 Salmonella enterica strain PNUSAS388794 SAMN37683979-rid19625953.denovo.17, whole genome shotgun sequence	10056..10961	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNLPA010000035.1 Salmonella enterica strain PNUSAS388794 SAMN37683979-rid19625953.guided.29, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNLPA010000018.1 Salmonella enterica strain PNUSAS388794 SAMN37683979-rid19625953.denovo.21, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNLPA010000034.1 Salmonella enterica strain PNUSAS388794 SAMN37683979-rid19625953.guided.28, whole genome shotgun sequence	394..1607	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNLPA010000016.1 Salmonella enterica strain PNUSAS388794 SAMN37683979-rid19625953.denovo.17, whole genome shotgun sequence	3906..4745	Sulfamethoxazole	U12338	sul1	100	840/840	ABNLPA010000033.1 Salmonella enterica strain PNUSAS388794 SAMN37683979-rid19625953.guided.23, whole genome shotgun sequence	3957..4796	Sulfamethoxazole	U12338	tet(A)	100	1230/1275	ABNLPA010000016.1 Salmonella enterica strain PNUSAS388794 SAMN37683979-rid19625953.denovo.17, whole genome shotgun sequence	1..1230	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNLPA010000033.1 Salmonella enterica strain PNUSAS388794 SAMN37683979-rid19625953.guided.23, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNLPA010000016.1 Salmonella enterica strain PNUSAS388794 SAMN37683979-rid19625953.denovo.17, whole genome shotgun sequence	2388..2861	Trimethoprim	X00926	dfrA1	100	474/474	ABNLPA010000033.1 Salmonella enterica strain PNUSAS388794 SAMN37683979-rid19625953.guided.23, whole genome shotgun sequence	2439..2912	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNLPA010000014.1 Salmonella enterica strain PNUSAS388794 SAMN37683979-rid19625953.denovo.15, whole genome shotgun sequence	8490..8740																																																						avrA	ABNLPA010000003.1	553473..554342	99.77	870	0						
GCA_032436295.1_PDT001917105.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLOZ010000001.1 Salmonella enterica strain PNUSAS388788 SAMN37683970-rid19625553.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLOZ010000025.1 Salmonella enterica strain PNUSAS388788 SAMN37683970-rid19625553.guided.16, whole genome shotgun sequence	11142..11579	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLOZ010000011.1 Salmonella enterica strain PNUSAS388788 SAMN37683970-rid19625553.denovo.12, whole genome shotgun sequence	40104..40746	enterobacteriales	IncFII(S)	100	262 / 262	ABNLOZ010000015.1 Salmonella enterica strain PNUSAS388788 SAMN37683970-rid19625553.denovo.18, whole genome shotgun sequence	3263..3524																																																avrA	ABNLOZ010000002.1	553636..554505	99.54	870	0						
GCA_032436315.1_PDT001917100.1_genomic.fna	Salmonella_enterica	0.5213	257.763 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLPC010000001.1 Salmonella enterica strain PNUSAS388751 SAMN37683598-rid19625883.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLPC010000033.1 Salmonella enterica strain PNUSAS388751 SAMN37683598-rid19625883.guided.24, whole genome shotgun sequence	15747..16184	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLPC010000024.1 Salmonella enterica strain PNUSAS388751 SAMN37683598-rid19625883.denovo.25, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNLPC010000025.1 Salmonella enterica strain PNUSAS388751 SAMN37683598-rid19625883.denovo.26, whole genome shotgun sequence	3403..3664																																																avrA	ABNLPC010000005.1	175197..176066	99.54	870	0						
GCA_032436335.1_PDT001917103.1_genomic.fna	Salmonella_enterica	0.5214	275.595 KB	7	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pMET)	aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLPB010000001.1 Salmonella enterica strain PNUSAS388750 SAMN37683597-rid19625903.denovo.01, whole genome shotgun sequence	514206..514643	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLPB010000033.1 Salmonella enterica strain PNUSAS388750 SAMN37683597-rid19625903.guided.29, whole genome shotgun sequence	8352..8789	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pMET)	98.27	577 / 577	ABNLPB010000027.1 Salmonella enterica strain PNUSAS388750 SAMN37683597-rid19625903.denovo.27, whole genome shotgun sequence	4948..5524																																																						avrA	ABNLPB010000005.1	149525..150394	99.425	870	0						
GCA_032436355.1_PDT001917102.1_genomic.fna	Salmonella_enterica	0.5211	297.12 KB	5	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNLPD010000001.1 Salmonella enterica strain PNUSAS388746 SAMN37683592-rid19625893.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNLPD010000034.1 Salmonella enterica strain PNUSAS388746 SAMN37683592-rid19625893.guided.27, whole genome shotgun sequence	12182..12619	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNLPD010000025.1 Salmonella enterica strain PNUSAS388746 SAMN37683592-rid19625893.denovo.29, whole genome shotgun sequence	239..369																																																						avrA	ABNLPD010000003.1	140114..140983	99.425	870	0						
GCA_032436375.1_PDT001917098.1_genomic.fna	Salmonella_enterica	0.5225	737.396 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNLPE010000001.1 Salmonella enterica strain PNUSAS388749 SAMN37683593-rid19625873.denovo.01, whole genome shotgun sequence	645555..645992	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNLPE010000018.1 Salmonella enterica strain PNUSAS388749 SAMN37683593-rid19625873.guided.14, whole genome shotgun sequence	13463..13900	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLPE010000002.1	561758..562628	99.656	871	0						
GCA_032436415.1_PDT001917093.1_genomic.fna	Salmonella_enterica	0.5219	494.115 KB	4	aroC_559,dnaN_64,hemD_40,hisD_96,purE_448,sucA_186,thrA_553	2794	7:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440II	aroC	100	100	aroC_559	dnaN	100	100	dnaN_64	hemD	100	100	hemD_40	hisD	100	100	hisD_96	purE	100	100	purE_448	sucA	100	100	sucA_186	thrA	100	100	thrA_553	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLPG010000001.1 Salmonella enterica strain PNUSAS388697 SAMN37682799-rid19625863.denovo.01, whole genome shotgun sequence	469519..469956	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLPG010000026.1 Salmonella enterica strain PNUSAS388697 SAMN37682799-rid19625863.guided.19, whole genome shotgun sequence	8818..9255	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNLPG010000021.1 Salmonella enterica strain PNUSAS388697 SAMN37682799-rid19625863.denovo.25, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNLPG010000029.1 Salmonella enterica strain PNUSAS388697 SAMN37682799-rid19625863.guided.26, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNLPG010000020.1 Salmonella enterica strain PNUSAS388697 SAMN37682799-rid19625863.denovo.24, whole genome shotgun sequence	846..974	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNLPG010000021.1 Salmonella enterica strain PNUSAS388697 SAMN37682799-rid19625863.denovo.25, whole genome shotgun sequence	1522..1652		enterobacteriales	Col440II	97.87	282 / 282	ABNLPG010000020.1 Salmonella enterica strain PNUSAS388697 SAMN37682799-rid19625863.denovo.24, whole genome shotgun sequence	1551..1832																																																				
GCA_032436435.1_PDT001917087.1_genomic.fna	Salmonella_enterica	0.5217	324.042 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLPI010000002.1 Salmonella enterica strain PNUSAS388719 SAMN37682761-rid19625453.denovo.02, whole genome shotgun sequence	145576..146013	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLPI010000053.1 Salmonella enterica strain PNUSAS388719 SAMN37682761-rid19625453.guided.25, whole genome shotgun sequence	31717..32154	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLPI010000033.1 Salmonella enterica strain PNUSAS388719 SAMN37682761-rid19625453.denovo.36, whole genome shotgun sequence	6829..7471	enterobacteriales	IncFII(S)	100	262 / 262	ABNLPI010000028.1 Salmonella enterica strain PNUSAS388719 SAMN37682761-rid19625453.denovo.30, whole genome shotgun sequence	23970..24231																																																avrA	ABNLPI010000001.1	450792..451661	99.885	870	0						
GCA_032436455.1_PDT001917092.1_genomic.fna	Salmonella_enterica	0.5211	490.178 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLPH010000001.1 Salmonella enterica strain PNUSAS388699 SAMN37682800-rid19625853.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLPH010000026.1 Salmonella enterica strain PNUSAS388699 SAMN37682800-rid19625853.guided.17, whole genome shotgun sequence	6998..7435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLPH010000017.1 Salmonella enterica strain PNUSAS388699 SAMN37682800-rid19625853.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNLPH010000018.1 Salmonella enterica strain PNUSAS388699 SAMN37682800-rid19625853.denovo.21, whole genome shotgun sequence	3395..3656																																																avrA	ABNLPH010000002.1	585354..586223	99.54	870	0						
GCA_032436475.1_PDT001917083.1_genomic.fna	Salmonella_enterica	0.5215	299.606 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLPJ010000001.1 Salmonella enterica strain PNUSAS388720 SAMN37682760-rid19625823.denovo.01, whole genome shotgun sequence	263734..264171	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLPJ010000028.1 Salmonella enterica strain PNUSAS388720 SAMN37682760-rid19625823.guided.20, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLPJ010000017.1	39348..40216	99.195	870	0						
GCA_032436495.1_PDT001917082.1_genomic.fna	Salmonella_enterica	0.5225	222.915 KB	6	aroC_5,dnaN_14,hemD_21,hisD_9,purE_6,sucA_12,thrA_17	49	4:z10:1,2	3	aac(6')-Iaa,aac(6')-Iaa,qnrS1,qnrS1,tet(A),tet(A)	0		2	ColpVC,IncX2,IncX2	aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	z10	1,2	Salmonella enterica subspecies enterica (subspecies I)	Haifa		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLPK010000001.1 Salmonella enterica strain PNUSAS388722 SAMN37682758-rid19625813.denovo.01, whole genome shotgun sequence	638705..639142	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLPK010000050.1 Salmonella enterica strain PNUSAS388722 SAMN37682758-rid19625813.guided.42, whole genome shotgun sequence	960..1397	Amikacin, Tobramycin	NC_003197	qnrS1	100	657/657	ABNLPK010000031.1 Salmonella enterica strain PNUSAS388722 SAMN37682758-rid19625813.denovo.31, whole genome shotgun sequence	14082..14738	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNLPK010000049.1 Salmonella enterica strain PNUSAS388722 SAMN37682758-rid19625813.guided.40, whole genome shotgun sequence	8189..8845	Ciprofloxacin	AB187515	tet(A)	99.92	1200/1200	ABNLPK010000031.1 Salmonella enterica strain PNUSAS388722 SAMN37682758-rid19625813.denovo.31, whole genome shotgun sequence	8228..9427	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNLPK010000047.1 Salmonella enterica strain PNUSAS388722 SAMN37682758-rid19625813.guided.36, whole genome shotgun sequence	3484..4683	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	ColpVC	98.96	193 / 193	ABNLPK010000039.1 Salmonella enterica strain PNUSAS388722 SAMN37682758-rid19625813.denovo.44, whole genome shotgun sequence	805..997	enterobacteriales	IncX2	100	374 / 374	ABNLPK010000031.1 Salmonella enterica strain PNUSAS388722 SAMN37682758-rid19625813.denovo.31, whole genome shotgun sequence	770..1143		enterobacteriales	IncX2	100	374 / 374	ABNLPK010000047.1 Salmonella enterica strain PNUSAS388722 SAMN37682758-rid19625813.guided.36, whole genome shotgun sequence	11768..12141																																									avrA	ABNLPK010000013.1	85712..86581	99.655	870	0						
GCA_032436515.1_PDT001917045.1_genomic.fna	Salmonella_enterica	0.5219	392.631 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_603	2783	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_603	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNLPO010000001.1 Salmonella enterica strain PNUSAS388091 SAMN37675451-rid19625293.denovo.01, whole genome shotgun sequence	674347..674784	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNLPO010000027.1 Salmonella enterica strain PNUSAS388091 SAMN37675451-rid19625293.guided.21, whole genome shotgun sequence	5571..6008	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNLPO010000016.1 Salmonella enterica strain PNUSAS388091 SAMN37675451-rid19625293.denovo.16, whole genome shotgun sequence	19182..19323																																																						avrA	ABNLPO010000006.1	174834..175703	99.54	870	0						
GCA_032436535.1_PDT001917053.1_genomic.fna	Salmonella_enterica	0.5223	257.839 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLPL010000002.1 Salmonella enterica strain PNUSAS388070 SAMN37675458-rid19625353.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLPL010000053.1 Salmonella enterica strain PNUSAS388070 SAMN37675458-rid19625353.guided.37, whole genome shotgun sequence	3264..3701	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLPL010000022.1 Salmonella enterica strain PNUSAS388070 SAMN37675458-rid19625353.denovo.22, whole genome shotgun sequence	44747..45389	enterobacteriales	IncFII(S)	100	262 / 262	ABNLPL010000022.1 Salmonella enterica strain PNUSAS388070 SAMN37675458-rid19625353.denovo.22, whole genome shotgun sequence	29401..29662		enterobacteriales	IncI(Gamma)	97.81	137 / 141	ABNLPL010000018.1 Salmonella enterica strain PNUSAS388070 SAMN37675458-rid19625353.denovo.18, whole genome shotgun sequence	71406..71542																																									avrA	ABNLPL010000001.1	401280..402148	100	869	0						
GCA_032436845.1_PDT001917117.1_genomic.fna	Salmonella_enterica	0.522	773.255 KB	2	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	9	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-55,blaTEM-216,blaTEM-214,blaTEM-209,blaTEM-206,blaTEM-141,blaTEM-1B,blaCTX-M-55,blaTEM-214,blaTEM-206,blaTEM-141,blaTEM-1B,tet(A),tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLPS010000001.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.denovo.01, whole genome shotgun sequence	1329303..1329740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLPS010000037.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.guided.34, whole genome shotgun sequence	115..552	Amikacin, Tobramycin	NC_003197	blaCTX-M-55	100	876/876	ABNLPS010000022.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.denovo.24, whole genome shotgun sequence	731..1606	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-216	100	738/861	ABNLPS010000022.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.denovo.24, whole genome shotgun sequence	2388..3125	Unknown Beta-lactam	KF944358	blaTEM-214	100	738/861	ABNLPS010000022.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.denovo.24, whole genome shotgun sequence	2388..3125	Unknown Beta-lactam	KP050491	blaTEM-209	100	738/861	ABNLPS010000022.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.denovo.24, whole genome shotgun sequence	2388..3125	Unknown Beta-lactam	KF240808	blaTEM-206	100	738/861	ABNLPS010000022.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.denovo.24, whole genome shotgun sequence	2388..3125	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	100	738/861	ABNLPS010000022.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.denovo.24, whole genome shotgun sequence	2388..3125	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	100	738/861	ABNLPS010000022.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.denovo.24, whole genome shotgun sequence	2388..3125	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNLPS010000035.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.guided.26, whole genome shotgun sequence	2..877	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-214	99.87	746/861	ABNLPS010000035.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.guided.26, whole genome shotgun sequence	1659..2404	Unknown Beta-lactam	KP050491	blaTEM-206	99.87	746/861	ABNLPS010000035.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.guided.26, whole genome shotgun sequence	1659..2404	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	99.87	746/861	ABNLPS010000035.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.guided.26, whole genome shotgun sequence	1659..2404	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	99.87	746/861	ABNLPS010000035.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.guided.26, whole genome shotgun sequence	1659..2404	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	ABNLPS010000016.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.denovo.16, whole genome shotgun sequence	2339..3538	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNLPS010000032.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.guided.18, whole genome shotgun sequence	3328..4527	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNLPS010000033.1 Salmonella enterica strain PNUSAS388796 SAMN37683976-rid19625623.guided.19, whole genome shotgun sequence	3328..4527	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	ABNLPS010000003.1	144730..145599	99.31	870	0						
GCA_032436865.1_PDT001917097.1_genomic.fna	Salmonella_enterica	0.5213	196.199 KB	8	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNLPU010000002.1 Salmonella enterica strain PNUSAS388748 SAMN37683594-rid19625513.denovo.02, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNLPU010000044.1 Salmonella enterica strain PNUSAS388748 SAMN37683594-rid19625513.guided.29, whole genome shotgun sequence	15162..15599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLPU010000005.1	93726..94595	99.77	870	0						
GCA_032436955.1_PDT001917114.1_genomic.fna	Salmonella_enterica	0.5217	312.88 KB	4	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLPT010000001.1 Salmonella enterica strain PNUSAS388768 SAMN37683977-rid19625603.denovo.01, whole genome shotgun sequence	931709..932146	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNLPT010000029.1 Salmonella enterica strain PNUSAS388768 SAMN37683977-rid19625603.guided.23, whole genome shotgun sequence	1589..2026	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032436995.1_PDT001917086.1_genomic.fna	Salmonella_enterica	0.5219	173.645 KB	11	aroC_346,dnaN_4,hemD_8,hisD_125,purE_84,sucA_19,thrA_101	1296	9:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_346	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_19	thrA	100	100	thrA_101	9	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Lome		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNLPW010000001.1 Salmonella enterica strain PNUSAS388721 SAMN37682762-rid19625443.denovo.01, whole genome shotgun sequence	149877..150314	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNLPW010000054.1 Salmonella enterica strain PNUSAS388721 SAMN37682762-rid19625443.guided.34, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLPW010000009.1	93973..94842	98.966	870	0						
GCA_032437015.1_PDT001917024.1_genomic.fna	Salmonella_enterica	0.5225	372.288 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLPX010000001.1 Salmonella enterica strain PNUSAS388099 SAMN37675439-rid19625113.denovo.01, whole genome shotgun sequence	558297..558734	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLPX010000032.1 Salmonella enterica strain PNUSAS388099 SAMN37675439-rid19625113.guided.24, whole genome shotgun sequence	3034..3471	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLPX010000015.1	39454..40322	99.195	870	0						
GCA_032437035.1_PDT001917034.1_genomic.fna	Salmonella_enterica	0.5212	382.677 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLPY010000001.1 Salmonella enterica strain PNUSAS388696 SAMN37675443-rid19625203.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNLPY010000030.1 Salmonella enterica strain PNUSAS388696 SAMN37675443-rid19625203.guided.24, whole genome shotgun sequence	1217..1654	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLPY010000002.1	144915..145784	99.31	870	0						
GCA_032437155.1_PDT001822417.1_genomic.fna	Salmonella_enterica	0.5212	478.497 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLQE010000001.1 Salmonella enterica strain PNUSAS364261 SAMN36614818-rid18821193.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLQE010000030.1 Salmonella enterica strain PNUSAS364261 SAMN36614818-rid18821193.guided.17, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLQE010000018.1 Salmonella enterica strain PNUSAS364261 SAMN36614818-rid18821193.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNLQE010000020.1 Salmonella enterica strain PNUSAS364261 SAMN36614818-rid18821193.denovo.22, whole genome shotgun sequence	3425..3686																																																avrA	ABNLQE010000002.1	553643..554512	99.54	870	0						
GCA_032437175.1_PDT001822416.1_genomic.fna	Salmonella_enterica	0.5211	263.808 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLQF010000001.1 Salmonella enterica strain PNUSAS364262 SAMN36614811-rid18821183.denovo.01, whole genome shotgun sequence	384682..385119	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLQF010000070.1 Salmonella enterica strain PNUSAS364262 SAMN36614811-rid18821183.guided.31, whole genome shotgun sequence	648..1085	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLQF010000009.1	150785..151655	99.196	871	0						
GCA_032437195.1_PDT001822415.1_genomic.fna	Salmonella_enterica	0.5224	203.759 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLQG010000001.1 Salmonella enterica strain PNUSAS364266 SAMN36614812-rid18821173.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNLQG010000048.1 Salmonella enterica strain PNUSAS364266 SAMN36614812-rid18821173.guided.30, whole genome shotgun sequence	13009..13446	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLQG010000006.1	39430..40299	99.655	870	0						
GCA_032437375.1_PDT001822406.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLQP010000001.1 Salmonella enterica strain PNUSAS364177 SAMN36614785-rid18821083.denovo.01, whole genome shotgun sequence	774108..774545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLQP010000028.1 Salmonella enterica strain PNUSAS364177 SAMN36614785-rid18821083.guided.23, whole genome shotgun sequence	3651..4088	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLQP010000019.1 Salmonella enterica strain PNUSAS364177 SAMN36614785-rid18821083.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNLQP010000020.1 Salmonella enterica strain PNUSAS364177 SAMN36614785-rid18821083.denovo.22, whole genome shotgun sequence	3399..3660																																																avrA	ABNLQP010000002.1	553648..554517	99.54	870	0						
GCA_032437395.1_PDT001822405.1_genomic.fna	Salmonella_enterica	0.5209	496.975 KB	3	aroC_41,dnaN_332,hemD_79,hisD_62,purE_28,sucA_14,thrA_96	1384	38:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_62	purE	100	100	purE_28	sucA	100	100	sucA_14	thrA	100	100	thrA_96	38	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Inverness		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNLQQ010000001.1 Salmonella enterica strain PNUSAS363888 SAMN36614790-rid18821073.denovo.01, whole genome shotgun sequence	706987..707424	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNLQQ010000028.1 Salmonella enterica strain PNUSAS363888 SAMN36614790-rid18821073.guided.27, whole genome shotgun sequence	414..851	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNLQQ010000013.1 Salmonella enterica strain PNUSAS363888 SAMN36614790-rid18821073.denovo.13, whole genome shotgun sequence	39210..39852																																																						avrA	ABNLQQ010000002.1	505649..506518	99.54	870	0						
GCA_032437415.1_PDT001822403.1_genomic.fna	Salmonella_enterica	0.5211	430.002 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLQS010000001.1 Salmonella enterica strain PNUSAS363883 SAMN36614781-rid18821053.denovo.01, whole genome shotgun sequence	562083..562520	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLQS010000036.1 Salmonella enterica strain PNUSAS363883 SAMN36614781-rid18821053.guided.25, whole genome shotgun sequence	1462..1899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLQS010000009.1	140191..141059	99.195	870	0						
GCA_032437435.1_PDT001822404.1_genomic.fna	Salmonella_enterica	0.5213	406.073 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLQR010000001.1 Salmonella enterica strain PNUSAS364180 SAMN36614788-rid18821063.denovo.01, whole genome shotgun sequence	815076..815513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLQR010000027.1 Salmonella enterica strain PNUSAS364180 SAMN36614788-rid18821063.guided.20, whole genome shotgun sequence	2446..2883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLQR010000018.1 Salmonella enterica strain PNUSAS364180 SAMN36614788-rid18821063.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNLQR010000019.1 Salmonella enterica strain PNUSAS364180 SAMN36614788-rid18821063.denovo.21, whole genome shotgun sequence	3384..3645																																																avrA	ABNLQR010000002.1	553181..554050	99.54	870	0						
GCA_032437455.1_PDT001822401.1_genomic.fna	Salmonella_enterica	0.521	707.364 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15*,purE_12,sucA_15,thrA_4	23*	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	99.8003992015968	100	hisD_15*	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLQU010000001.1 Salmonella enterica strain PNUSAS363891 SAMN36614768-rid18821033.denovo.01, whole genome shotgun sequence	643173..643610	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLQU010000017.1 Salmonella enterica strain PNUSAS363891 SAMN36614768-rid18821033.guided.13, whole genome shotgun sequence	4933..5370	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032437475.1_PDT001822399.1_genomic.fna	Salmonella_enterica	0.5217	251.572 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLQW010000001.1 Salmonella enterica strain PNUSAS363882 SAMN36614778-rid18821013.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLQW010000043.1 Salmonella enterica strain PNUSAS363882 SAMN36614778-rid18821013.guided.27, whole genome shotgun sequence	12103..12540	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLQW010000019.1 Salmonella enterica strain PNUSAS363882 SAMN36614778-rid18821013.denovo.19, whole genome shotgun sequence	48424..49066	enterobacteriales	IncFII(S)	100	262 / 262	ABNLQW010000019.1 Salmonella enterica strain PNUSAS363882 SAMN36614778-rid18821013.denovo.19, whole genome shotgun sequence	64151..64412																																																avrA	ABNLQW010000003.1	175018..175886	100	869	0						
GCA_032437495.1_PDT001822400.1_genomic.fna	Salmonella_enterica	0.5212	598.885 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLQV010000001.1 Salmonella enterica strain PNUSAS363890 SAMN36614760-rid18821023.denovo.01, whole genome shotgun sequence	384606..385043	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLQV010000045.1 Salmonella enterica strain PNUSAS363890 SAMN36614760-rid18821023.guided.19, whole genome shotgun sequence	10045..10482	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLQV010000003.1	504146..505016	99.196	871	0						
GCA_032437515.1_PDT001822398.1_genomic.fna	Salmonella_enterica	0.5217	512.483 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNLQX010000001.1 Salmonella enterica strain PNUSAS364185 SAMN36614767-rid18821003.denovo.01, whole genome shotgun sequence	486956..487393	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNLQX010000022.1 Salmonella enterica strain PNUSAS364185 SAMN36614767-rid18821003.guided.20, whole genome shotgun sequence	1630..2067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLQX010000002.1	544607..545475	99.425	870	0						
GCA_032437535.1_PDT001822397.1_genomic.fna	Salmonella_enterica	0.5228	385.345 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_209*,sucA_13,thrA_4	Unknown	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	99.749373433584	100	purE_209*	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLQY010000001.1 Salmonella enterica strain PNUSAS363884 SAMN36614782-rid18820993.denovo.01, whole genome shotgun sequence	169800..170237	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLQY010000034.1 Salmonella enterica strain PNUSAS363884 SAMN36614782-rid18820993.guided.23, whole genome shotgun sequence	1826..2263	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032437555.1_PDT001822396.1_genomic.fna	Salmonella_enterica	0.5224	397.494 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLRA010000001.1 Salmonella enterica strain PNUSAS364184 SAMN36614764-rid18820983.denovo.01, whole genome shotgun sequence	790294..790731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLRA010000029.1 Salmonella enterica strain PNUSAS364184 SAMN36614764-rid18820983.guided.19, whole genome shotgun sequence	30268..30705	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLRA010000007.1	129887..130756	98.966	870	0						
GCA_032437565.1_PDT001822402.1_genomic.fna	Salmonella_enterica	0.5212	251.572 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLQT010000001.1 Salmonella enterica strain PNUSAS363894 SAMN36614787-rid18821043.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLQT010000044.1 Salmonella enterica strain PNUSAS363894 SAMN36614787-rid18821043.guided.27, whole genome shotgun sequence	25841..26278	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLQT010000019.1 Salmonella enterica strain PNUSAS363894 SAMN36614787-rid18821043.denovo.19, whole genome shotgun sequence	48450..49092	enterobacteriales	IncFII(S)	100	262 / 262	ABNLQT010000019.1 Salmonella enterica strain PNUSAS363894 SAMN36614787-rid18821043.denovo.19, whole genome shotgun sequence	64177..64438																																																avrA	ABNLQT010000003.1	175018..175886	100	869	0						
GCA_032437595.1_PDT001822395.1_genomic.fna	Salmonella_enterica	0.5213	392.192 KB	4	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLQZ010000001.1 Salmonella enterica strain PNUSAS364186 SAMN36614774-rid18820973.denovo.01, whole genome shotgun sequence	933044..933481	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNLQZ010000027.1 Salmonella enterica strain PNUSAS364186 SAMN36614774-rid18820973.guided.21, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032437635.1_PDT001822391.1_genomic.fna	Salmonella_enterica	0.5208	191.768 KB	9	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_150,thrA_22	464	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_150	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLRE010000011.1 Salmonella enterica strain PNUSAS363873 SAMN36614762-rid18820933.denovo.11, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNLRE010000058.1 Salmonella enterica strain PNUSAS363873 SAMN36614762-rid18820933.guided.39, whole genome shotgun sequence	5822..6259	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNLRE010000023.1 Salmonella enterica strain PNUSAS363873 SAMN36614762-rid18820933.denovo.23, whole genome shotgun sequence	35925..36567																																																																	
GCA_032437655.1_PDT001822394.1_genomic.fna	Salmonella_enterica	0.5216	394.619 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNLRB010000001.1 Salmonella enterica strain PNUSAS364178 SAMN36614784-rid18820963.denovo.01, whole genome shotgun sequence	411594..412031	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.47	425/438	ABNLRB010000027.1 Salmonella enterica strain PNUSAS364178 SAMN36614784-rid18820963.guided.26, whole genome shotgun sequence	1..425	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLRB010000003.1	544607..545475	99.425	870	0						
GCA_032437675.1_PDT001822390.1_genomic.fna	Salmonella_enterica	0.5217	338.419 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLRI010000001.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNLRI010000024.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.denovo.24, whole genome shotgun sequence	1156..1947	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNLRI010000024.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.denovo.24, whole genome shotgun sequence	1156..1947	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNLRI010000039.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.denovo.42, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNLRI010000039.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.denovo.42, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNLRI010000050.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.guided.36, whole genome shotgun sequence	3136..3573	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNLRI010000051.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.guided.43, whole genome shotgun sequence	1027..1818	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNLRI010000051.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.guided.43, whole genome shotgun sequence	1027..1818	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNLRI010000053.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.guided.48, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNLRI010000053.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.guided.48, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNLRI010000035.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.denovo.38, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNLRI010000052.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.guided.47, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNLRI010000024.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.denovo.24, whole genome shotgun sequence	2452..3291	Sulfamethoxazole	U12338	sul1	100	840/840	ABNLRI010000051.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.guided.43, whole genome shotgun sequence	2323..3162	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNLRI010000024.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.denovo.24, whole genome shotgun sequence	15808..17007	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNLRI010000054.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.guided.49, whole genome shotgun sequence	1514..2713	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNLRI010000028.1 Salmonella enterica strain PNUSAS363877 SAMN36614773-rid18820923.denovo.28, whole genome shotgun sequence	9109..9668																																																						avrA	ABNLRI010000002.1	149828..150697	99.655	870	0						
GCA_032437695.1_PDT001822393.1_genomic.fna	Salmonella_enterica	0.5211	384.241 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLRD010000002.1 Salmonella enterica strain PNUSAS364181 SAMN36614777-rid18820953.denovo.02, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLRD010000033.1 Salmonella enterica strain PNUSAS364181 SAMN36614777-rid18820953.guided.23, whole genome shotgun sequence	17302..17739	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLRD010000001.1	504334..505204	99.196	871	0						
GCA_032437715.1_PDT001822389.1_genomic.fna	Salmonella_enterica	0.5217	666.533 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLRF010000001.1 Salmonella enterica strain PNUSAS363879 SAMN36614776-rid18820913.denovo.01, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLRF010000027.1 Salmonella enterica strain PNUSAS363879 SAMN36614776-rid18820913.guided.18, whole genome shotgun sequence	5942..6379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLRF010000003.1	514956..515824	99.195	870	0						
GCA_032437735.1_PDT001822388.1_genomic.fna	Salmonella_enterica	0.5214	283.016 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLRG010000001.1 Salmonella enterica strain PNUSAS364197 SAMN36614793-rid18820903.denovo.01, whole genome shotgun sequence	293266..293703	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLRG010000031.1 Salmonella enterica strain PNUSAS364197 SAMN36614793-rid18820903.guided.23, whole genome shotgun sequence	12..449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLRG010000022.1 Salmonella enterica strain PNUSAS364197 SAMN36614793-rid18820903.denovo.22, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABNLRG010000024.1 Salmonella enterica strain PNUSAS364197 SAMN36614793-rid18820903.denovo.26, whole genome shotgun sequence	3410..3671																																																avrA	ABNLRG010000002.1	553318..554187	99.54	870	0						
GCA_032437755.1_PDT001822387.1_genomic.fna	Salmonella_enterica	0.5208	599.073 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLRH010000001.1 Salmonella enterica strain PNUSAS363881 SAMN36614770-rid18820893.denovo.01, whole genome shotgun sequence	386554..386991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLRH010000043.1 Salmonella enterica strain PNUSAS363881 SAMN36614770-rid18820893.guided.21, whole genome shotgun sequence	9905..10342	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLRH010000003.1	504334..505204	99.196	871	0						
GCA_032437775.1_PDT001822385.1_genomic.fna	Salmonella_enterica	0.5204	412.063 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLRK010000001.1 Salmonella enterica strain PNUSAS363892 SAMN36614765-rid18820873.denovo.01, whole genome shotgun sequence	385109..385546	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLRK010000055.1 Salmonella enterica strain PNUSAS363892 SAMN36614765-rid18820873.guided.15, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLRK010000002.1	504316..505186	99.196	871	0						
GCA_032437795.1_PDT001822386.1_genomic.fna	Salmonella_enterica	0.5221	257.755 KB	6	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	Col(pHAD28),IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNLRJ010000001.1 Salmonella enterica strain PNUSAS364182 SAMN36614771-rid18820883.denovo.01, whole genome shotgun sequence	177481..177918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNLRJ010000039.1 Salmonella enterica strain PNUSAS364182 SAMN36614771-rid18820883.guided.31, whole genome shotgun sequence	10444..10881	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNLRJ010000027.1 Salmonella enterica strain PNUSAS364182 SAMN36614771-rid18820883.denovo.28, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNLRJ010000040.1 Salmonella enterica strain PNUSAS364182 SAMN36614771-rid18820883.guided.32, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNLRJ010000027.1 Salmonella enterica strain PNUSAS364182 SAMN36614771-rid18820883.denovo.28, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNLRJ010000042.1 Salmonella enterica strain PNUSAS364182 SAMN36614771-rid18820883.guided.37, whole genome shotgun sequence	1724..2937	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNLRJ010000027.1 Salmonella enterica strain PNUSAS364182 SAMN36614771-rid18820883.denovo.28, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNLRJ010000040.1 Salmonella enterica strain PNUSAS364182 SAMN36614771-rid18820883.guided.32, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNLRJ010000027.1 Salmonella enterica strain PNUSAS364182 SAMN36614771-rid18820883.denovo.28, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNLRJ010000041.1 Salmonella enterica strain PNUSAS364182 SAMN36614771-rid18820883.guided.36, whole genome shotgun sequence	2311..3585	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNLRJ010000027.1 Salmonella enterica strain PNUSAS364182 SAMN36614771-rid18820883.denovo.28, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNLRJ010000041.1 Salmonella enterica strain PNUSAS364182 SAMN36614771-rid18820883.guided.36, whole genome shotgun sequence	680..1153	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNLRJ010000030.1 Salmonella enterica strain PNUSAS364182 SAMN36614771-rid18820883.denovo.34, whole genome shotgun sequence	1164..1294	enterobacteriales	IncR	100	251 / 251	ABNLRJ010000026.1 Salmonella enterica strain PNUSAS364182 SAMN36614771-rid18820883.denovo.27, whole genome shotgun sequence	4434..4684																																																avrA	ABNLRJ010000002.1	553351..554220	99.77	870	0						
GCA_032437815.1_PDT001822384.1_genomic.fna	Salmonella_enterica	0.5192	278.344 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		1	IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLRL010000001.1 Salmonella enterica strain PNUSAS363875 SAMN36614779-rid18820863.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLRL010000052.1 Salmonella enterica strain PNUSAS363875 SAMN36614779-rid18820863.guided.22, whole genome shotgun sequence	31212..31649	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNLRL010000031.1 Salmonella enterica strain PNUSAS363875 SAMN36614779-rid18820863.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNLRL010000053.1 Salmonella enterica strain PNUSAS363875 SAMN36614779-rid18820863.guided.32, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncX1	98.66	374 / 374	ABNLRL010000025.1 Salmonella enterica strain PNUSAS363875 SAMN36614779-rid18820863.denovo.26, whole genome shotgun sequence	6956..7329																																																						avrA	ABNLRL010000002.1	540620..541489	99.885	870	0						
GCA_032437835.1_PDT001917195.1_genomic.fna	Salmonella_enterica	0.5225	223.981 KB	7	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLRO010000004.1 Salmonella enterica strain PNUSAS388841 SAMN37685177-rid19626563.denovo.04, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLRO010000045.1 Salmonella enterica strain PNUSAS388841 SAMN37685177-rid19626563.guided.27, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032437855.1_PDT001822383.1_genomic.fna	Salmonella_enterica	0.5207	540.771 KB	4	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLRM010000001.1 Salmonella enterica strain PNUSAS363893 SAMN36614759-rid18820853.denovo.01, whole genome shotgun sequence	151992..152429	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLRM010000021.1 Salmonella enterica strain PNUSAS363893 SAMN36614759-rid18820853.guided.16, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	fosA7	96.22	423/423	ABNLRM010000002.1 Salmonella enterica strain PNUSAS363893 SAMN36614759-rid18820853.denovo.02, whole genome shotgun sequence	394430..394852	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	ABNLRM010000022.1 Salmonella enterica strain PNUSAS363893 SAMN36614759-rid18820853.guided.17, whole genome shotgun sequence	21923..22345	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	ABNLRM010000015.1 Salmonella enterica strain PNUSAS363893 SAMN36614759-rid18820853.denovo.20, whole genome shotgun sequence	3345..3457																																																						avrA	ABNLRM010000008.1	169096..169965	99.195	870	0						
GCA_032437875.1_PDT001917193.1_genomic.fna	Salmonella_enterica	0.5223	219.318 KB	6	aroC_13,dnaN_11,hemD_25,hisD_197,purE_12,sucA_71,thrA_4	548	21:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_197	purE	100	100	purE_12	sucA	100	100	sucA_71	thrA	100	100	thrA_4	21	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Minnesota		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLRQ010000003.1 Salmonella enterica strain PNUSAS388844 SAMN37685173-rid19626543.denovo.03, whole genome shotgun sequence	37890..38327	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLRQ010000038.1 Salmonella enterica strain PNUSAS388844 SAMN37685173-rid19626543.guided.28, whole genome shotgun sequence	2302..2739	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLRQ010000001.1	552548..553417	99.31	870	0						
GCA_032437895.1_PDT001917194.1_genomic.fna	Salmonella_enterica	0.5218	142.357 KB	10	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_58,thrA_4	239	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pXuzhou21	aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_4	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLRP010000001.1 Salmonella enterica strain PNUSAS388843 SAMN37685174-rid19626553.denovo.01, whole genome shotgun sequence	12517..12954	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLRP010000062.1 Salmonella enterica strain PNUSAS388843 SAMN37685174-rid19626553.guided.56, whole genome shotgun sequence	1839..2276	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pXuzhou21	94.86	720 / 720	ABNLRP010000035.1 Salmonella enterica strain PNUSAS388843 SAMN37685174-rid19626553.denovo.35, whole genome shotgun sequence	29807..30526																																																																	
GCA_032437915.1_PDT001917189.1_genomic.fna	Salmonella_enterica	0.5192	526.086 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	6	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,floR,floR,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLRN010000001.1 Salmonella enterica strain 23NC09GT01-S SAMN37684954-rid19626503.denovo.01, whole genome shotgun sequence	503113..503550	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNLRN010000026.1 Salmonella enterica strain 23NC09GT01-S SAMN37684954-rid19626503.denovo.28, whole genome shotgun sequence	12881..13672	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNLRN010000026.1 Salmonella enterica strain 23NC09GT01-S SAMN37684954-rid19626503.denovo.28, whole genome shotgun sequence	12881..13672	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNLRN010000033.1 Salmonella enterica strain 23NC09GT01-S SAMN37684954-rid19626503.denovo.40, whole genome shotgun sequence	93..908	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	X62115	aac(6')-Iaa	97.95	438/438	ABNLRN010000047.1 Salmonella enterica strain 23NC09GT01-S SAMN37684954-rid19626503.guided.29, whole genome shotgun sequence	2320..2757	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNLRN010000049.1 Salmonella enterica strain 23NC09GT01-S SAMN37684954-rid19626503.guided.34, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNLRN010000049.1 Salmonella enterica strain 23NC09GT01-S SAMN37684954-rid19626503.guided.34, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNLRN010000051.1 Salmonella enterica strain 23NC09GT01-S SAMN37684954-rid19626503.guided.38, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	X62115	floR	98.19	1214/1215	ABNLRN010000029.1 Salmonella enterica strain 23NC09GT01-S SAMN37684954-rid19626503.denovo.33, whole genome shotgun sequence	2293..3506	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNLRN010000050.1 Salmonella enterica strain 23NC09GT01-S SAMN37684954-rid19626503.guided.36, whole genome shotgun sequence	1715..2928	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNLRN010000026.1 Salmonella enterica strain 23NC09GT01-S SAMN37684954-rid19626503.denovo.28, whole genome shotgun sequence	11537..12376	Sulfamethoxazole	U12338	sul1	100	840/840	ABNLRN010000049.1 Salmonella enterica strain 23NC09GT01-S SAMN37684954-rid19626503.guided.34, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNLRN010000024.1 Salmonella enterica strain 23NC09GT01-S SAMN37684954-rid19626503.denovo.25, whole genome shotgun sequence	930..2129	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNLRN010000046.1 Salmonella enterica strain 23NC09GT01-S SAMN37684954-rid19626503.guided.26, whole genome shotgun sequence	961..2160	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNLRN010000023.1 Salmonella enterica strain 23NC09GT01-S SAMN37684954-rid19626503.denovo.24, whole genome shotgun sequence	9109..9668																																																						avrA	ABNLRN010000004.1	145553..146422	98.966	870	0						
GCA_032437935.1_PDT001917187.1_genomic.fna	Salmonella_enterica	0.5213	200.168 KB	8	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLRS010000004.1 Salmonella enterica strain 23NC09GT03-S SAMN37684956-rid19626483.denovo.04, whole genome shotgun sequence	172644..173081	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLRS010000048.1 Salmonella enterica strain 23NC09GT03-S SAMN37684956-rid19626483.guided.21, whole genome shotgun sequence	26098..26535	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLRS010000010.1	150693..151563	99.196	871	0						
GCA_032437955.1_PDT001917188.1_genomic.fna	Salmonella_enterica	0.5213	714.293 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNLRR010000004.1 Salmonella enterica strain 23NC09GT02-S SAMN37684955-rid19626493.denovo.04, whole genome shotgun sequence	77771..78208	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLRR010000017.1 Salmonella enterica strain 23NC09GT02-S SAMN37684955-rid19626493.denovo.21, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNLRR010000017.1 Salmonella enterica strain 23NC09GT02-S SAMN37684955-rid19626493.denovo.21, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNLRR010000017.1 Salmonella enterica strain 23NC09GT02-S SAMN37684955-rid19626493.denovo.21, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNLRR010000017.1 Salmonella enterica strain 23NC09GT02-S SAMN37684955-rid19626493.denovo.21, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNLRR010000017.1 Salmonella enterica strain 23NC09GT02-S SAMN37684955-rid19626493.denovo.21, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNLRR010000029.1 Salmonella enterica strain 23NC09GT02-S SAMN37684955-rid19626493.guided.16, whole genome shotgun sequence	8861..9298	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLRR010000032.1 Salmonella enterica strain 23NC09GT02-S SAMN37684955-rid19626493.guided.20, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNLRR010000032.1 Salmonella enterica strain 23NC09GT02-S SAMN37684955-rid19626493.guided.20, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNLRR010000032.1 Salmonella enterica strain 23NC09GT02-S SAMN37684955-rid19626493.guided.20, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNLRR010000032.1 Salmonella enterica strain 23NC09GT02-S SAMN37684955-rid19626493.guided.20, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNLRR010000032.1 Salmonella enterica strain 23NC09GT02-S SAMN37684955-rid19626493.guided.20, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNLRR010000019.1 Salmonella enterica strain 23NC09GT02-S SAMN37684955-rid19626493.denovo.23, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNLRR010000033.1 Salmonella enterica strain 23NC09GT02-S SAMN37684955-rid19626493.guided.24, whole genome shotgun sequence	932..2131	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.93	374 / 374	ABNLRR010000015.1 Salmonella enterica strain 23NC09GT02-S SAMN37684955-rid19626493.denovo.15, whole genome shotgun sequence	772..1145																																																						avrA	ABNLRR010000003.1	573172..574041	99.655	870	0						
GCA_032437975.1_PDT001917181.1_genomic.fna	Salmonella_enterica	0.5224	259.134 KB	6	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNLRU010000001.1 Salmonella enterica strain PNUSAS388845 SAMN37685178-rid19626423.denovo.01, whole genome shotgun sequence	307821..308258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNLRU010000035.1 Salmonella enterica strain PNUSAS388845 SAMN37685178-rid19626423.guided.29, whole genome shotgun sequence	1351..1788	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032437995.1_PDT001917182.1_genomic.fna	Salmonella_enterica	0.5213	439.379 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLRT010000001.1 Salmonella enterica strain PNUSAS388842 SAMN37685176-rid19626433.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLRT010000025.1 Salmonella enterica strain PNUSAS388842 SAMN37685176-rid19626433.guided.23, whole genome shotgun sequence	328..765	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLRT010000019.1 Salmonella enterica strain PNUSAS388842 SAMN37685176-rid19626433.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNLRT010000020.1 Salmonella enterica strain PNUSAS388842 SAMN37685176-rid19626433.denovo.22, whole genome shotgun sequence	3403..3664																																																avrA	ABNLRT010000002.1	553087..553956	99.54	870	0						
GCA_032438015.1_PDT001917180.1_genomic.fna	Salmonella_enterica	0.5207	299.031 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLRW010000001.1 Salmonella enterica strain PNUSAS388839 SAMN37685175-rid19626413.denovo.01, whole genome shotgun sequence	481402..481839	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLRW010000033.1 Salmonella enterica strain PNUSAS388839 SAMN37685175-rid19626413.guided.27, whole genome shotgun sequence	7636..8073	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLRW010000025.1 Salmonella enterica strain PNUSAS388839 SAMN37685175-rid19626413.denovo.26, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNLRW010000020.1 Salmonella enterica strain PNUSAS388839 SAMN37685175-rid19626413.denovo.20, whole genome shotgun sequence	37106..37367																																																avrA	ABNLRW010000002.1	553623..554492	99.54	870	0						
GCA_032438035.1_PDT001917156.1_genomic.fna	Salmonella_enterica	0.5203	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1237,purE_1,sucA_1,thrA_5	6142	9:d:-	1	aac(6')-Iaa	1	gyrA_p.S83Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1237	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNLRX010000010.1 Salmonella enterica strain PNUSAS388764 SAMN37683987-rid19626173.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																																						
GCA_032438055.1_PDT001917159.1_genomic.fna	Salmonella_enterica	0.5204	430.461 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLRV010000008.1 Salmonella enterica strain PNUSAS388795 SAMN37683978-rid19626203.denovo.08, whole genome shotgun sequence	88728..89165	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLRV010000029.1 Salmonella enterica strain PNUSAS388795 SAMN37683978-rid19626203.guided.21, whole genome shotgun sequence	2006..2443	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLRV010000009.1	232053..232921	99.195	870	0						
GCA_032438075.1_PDT001917120.1_genomic.fna	Salmonella_enterica	0.5217	761.787 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	0		2	IncI1-I(Alpha),pXuzhou21	aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNLRZ010000001.1 Salmonella enterica strain PNUSAS388772 SAMN37684015-rid19625973.denovo.01, whole genome shotgun sequence	482042..482479	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNLRZ010000025.1 Salmonella enterica strain PNUSAS388772 SAMN37684015-rid19625973.guided.19, whole genome shotgun sequence	955..1392	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNLRZ010000009.1 Salmonella enterica strain PNUSAS388772 SAMN37684015-rid19625973.denovo.09, whole genome shotgun sequence	80494..81354	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNLRZ010000021.1 Salmonella enterica strain PNUSAS388772 SAMN37684015-rid19625973.guided.14, whole genome shotgun sequence	121..981	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNLRZ010000009.1 Salmonella enterica strain PNUSAS388772 SAMN37684015-rid19625973.denovo.09, whole genome shotgun sequence	74856..75671	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNLRZ010000021.1 Salmonella enterica strain PNUSAS388772 SAMN37684015-rid19625973.guided.14, whole genome shotgun sequence	5804..6619	Sulfamethoxazole	AY034138	dfrA1	99.79	474/474	ABNLRZ010000009.1 Salmonella enterica strain PNUSAS388772 SAMN37684015-rid19625973.denovo.09, whole genome shotgun sequence	85444..85917	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNLRZ010000009.1 Salmonella enterica strain PNUSAS388772 SAMN37684015-rid19625973.denovo.09, whole genome shotgun sequence	85444..85917	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNLRZ010000009.1 Salmonella enterica strain PNUSAS388772 SAMN37684015-rid19625973.denovo.09, whole genome shotgun sequence	85444..85917	Trimethoprim	X00926	dfrA1	99.79	474/474	ABNLRZ010000024.1 Salmonella enterica strain PNUSAS388772 SAMN37684015-rid19625973.guided.17, whole genome shotgun sequence	5128..5601	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNLRZ010000024.1 Salmonella enterica strain PNUSAS388772 SAMN37684015-rid19625973.guided.17, whole genome shotgun sequence	5128..5601	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNLRZ010000024.1 Salmonella enterica strain PNUSAS388772 SAMN37684015-rid19625973.guided.17, whole genome shotgun sequence	5128..5601	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncI1-I(Alpha)	98.59	142 / 142	ABNLRZ010000009.1 Salmonella enterica strain PNUSAS388772 SAMN37684015-rid19625973.denovo.09, whole genome shotgun sequence	94331..94472	enterobacteriales	pXuzhou21	99.86	720 / 720	ABNLRZ010000012.1 Salmonella enterica strain PNUSAS388772 SAMN37684015-rid19625973.denovo.12, whole genome shotgun sequence	23691..24410																																																avrA	ABNLRZ010000004.1	553743..554612	99.77	870	0						
GCA_032438095.1_PDT001917155.1_genomic.fna	Salmonella_enterica	0.5216	382.598 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLRY010000004.1 Salmonella enterica strain PNUSAS388797 SAMN37683975-rid19626163.denovo.04, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLRY010000041.1 Salmonella enterica strain PNUSAS388797 SAMN37683975-rid19626163.guided.30, whole genome shotgun sequence	4157..4594	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLRY010000015.1 Salmonella enterica strain PNUSAS388797 SAMN37683975-rid19626163.denovo.15, whole genome shotgun sequence	48453..49095	enterobacteriales	IncFII(S)	100	262 / 262	ABNLRY010000015.1 Salmonella enterica strain PNUSAS388797 SAMN37683975-rid19626163.denovo.15, whole genome shotgun sequence	64179..64440																																																avrA	ABNLRY010000001.1	484836..485704	100	869	0						
GCA_032438115.1_PDT001917090.1_genomic.fna	Salmonella_enterica	0.5216	345.655 KB	5	aroC_105,dnaN_2,hemD_3,hisD_12,purE_5,sucA_19,thrA_17	293	3,10:y:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_105	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	y	1,2	Salmonella enterica subspecies enterica (subspecies I)	Amager		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNLSA010000001.1 Salmonella enterica strain PNUSAS388700 SAMN37682797-rid19625843.denovo.01, whole genome shotgun sequence	661350..661787	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNLSA010000026.1 Salmonella enterica strain PNUSAS388700 SAMN37682797-rid19625843.guided.21, whole genome shotgun sequence	18165..18602	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLSA010000006.1	93865..94734	99.655	870	0						
GCA_032438135.1_PDT001822382.1_genomic.fna	Salmonella_enterica	0.522	447.457 KB	4	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLSD010000009.1 Salmonella enterica strain PNUSAS364183 SAMN36614752-rid18820843.denovo.09, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNLSD010000027.1 Salmonella enterica strain PNUSAS364183 SAMN36614752-rid18820843.guided.20, whole genome shotgun sequence	12081..12518	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032438175.1_PDT001822380.1_genomic.fna	Salmonella_enterica	0.5222	519.682 KB	3	aroC_81,dnaN_5,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	362	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_81	dnaN	100	100	dnaN_5	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNLSC010000001.1 Salmonella enterica strain PNUSAS363876 SAMN36614756-rid18820823.denovo.01, whole genome shotgun sequence	678816..679253	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNLSC010000022.1 Salmonella enterica strain PNUSAS363876 SAMN36614756-rid18820823.guided.15, whole genome shotgun sequence	4271..4708	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	ABNLSC010000016.1 Salmonella enterica strain PNUSAS363876 SAMN36614756-rid18820823.denovo.19, whole genome shotgun sequence	3345..3457																																																						avrA	ABNLSC010000002.1	562528..563397	99.31	870	0						
GCA_032438195.1_PDT001822379.1_genomic.fna	Salmonella_enterica	0.5202	568.577 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLSG010000003.1 Salmonella enterica strain PNUSAS363871 SAMN36614757-rid18820813.denovo.03, whole genome shotgun sequence	478283..478720	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLSG010000052.1 Salmonella enterica strain PNUSAS363871 SAMN36614757-rid18820813.guided.28, whole genome shotgun sequence	2765..3202	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNLSG010000022.1 Salmonella enterica strain PNUSAS363871 SAMN36614757-rid18820813.denovo.23, whole genome shotgun sequence	11455..12097																																																						avrA	ABNLSG010000005.1	181117..181986	99.425	870	0						
GCA_032438215.1_PDT001822378.1_genomic.fna	Salmonella_enterica	0.5221	207.445 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLSF010000002.1 Salmonella enterica strain PNUSAS364143 SAMN36613904-rid18820803.denovo.02, whole genome shotgun sequence	145462..145899	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLSF010000041.1 Salmonella enterica strain PNUSAS364143 SAMN36613904-rid18820803.guided.22, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLSF010000003.1	174490..175358	99.77	870	0						
GCA_032438235.1_PDT001822381.1_genomic.fna	Salmonella_enterica	0.5209	412.056 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLSE010000001.1 Salmonella enterica strain PNUSAS363887 SAMN36614753-rid18820833.denovo.01, whole genome shotgun sequence	383750..384187	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLSE010000036.1 Salmonella enterica strain PNUSAS363887 SAMN36614753-rid18820833.guided.25, whole genome shotgun sequence	934..1371	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLSE010000002.1	504331..505201	99.196	871	0						
GCA_032438255.1_PDT001822377.1_genomic.fna	Salmonella_enterica	0.521	367.861 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLSH010000001.1 Salmonella enterica strain PNUSAS364136 SAMN36613902-rid18820793.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLSH010000028.1 Salmonella enterica strain PNUSAS364136 SAMN36613902-rid18820793.guided.18, whole genome shotgun sequence	16382..16819	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLSH010000022.1 Salmonella enterica strain PNUSAS364136 SAMN36613902-rid18820793.denovo.24, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNLSH010000023.1 Salmonella enterica strain PNUSAS364136 SAMN36613902-rid18820793.denovo.26, whole genome shotgun sequence	3384..3645																																																avrA	ABNLSH010000005.1	175109..175978	99.54	870	0						
GCA_032438295.1_PDT001822369.1_genomic.fna	Salmonella_enterica	0.5214	278.283 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLSO010000002.1 Salmonella enterica strain PNUSAS364028 SAMN36613895-rid18820713.denovo.02, whole genome shotgun sequence	68365..68802	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLSO010000042.1 Salmonella enterica strain PNUSAS364028 SAMN36613895-rid18820713.guided.19, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.83	109 / 130	ABNLSO010000031.1 Salmonella enterica strain PNUSAS364028 SAMN36613895-rid18820713.denovo.34, whole genome shotgun sequence	1015..1123	enterobacteriales	IncFIB(S)	100	643 / 643	ABNLSO010000020.1 Salmonella enterica strain PNUSAS364028 SAMN36613895-rid18820713.denovo.21, whole genome shotgun sequence	44728..45370		enterobacteriales	IncFII(S)	100	262 / 262	ABNLSO010000020.1 Salmonella enterica strain PNUSAS364028 SAMN36613895-rid18820713.denovo.21, whole genome shotgun sequence	29382..29643																																									avrA	ABNLSO010000004.1	174640..175508	100	869	0						
GCA_032438305.1_PDT001822372.1_genomic.fna	Salmonella_enterica	0.5224	214.236 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLSN010000001.1 Salmonella enterica strain PNUSAS364139 SAMN36613901-rid18820743.denovo.01, whole genome shotgun sequence	572209..572646	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNLSN010000037.1 Salmonella enterica strain PNUSAS364139 SAMN36613901-rid18820743.guided.28, whole genome shotgun sequence	17287..17724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLSN010000007.1	39430..40299	99.655	870	0						
GCA_032438335.1_PDT001822373.1_genomic.fna	Salmonella_enterica	0.5202	462.528 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(p14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNLSK010000003.1 Salmonella enterica strain PNUSAS364027 SAMN36613889-rid18820753.denovo.03, whole genome shotgun sequence	341457..341894	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNLSK010000024.1 Salmonella enterica strain PNUSAS364027 SAMN36613889-rid18820753.guided.17, whole genome shotgun sequence	20599..21036	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNLSK010000012.1 Salmonella enterica strain PNUSAS364027 SAMN36613889-rid18820753.denovo.12, whole genome shotgun sequence	17040..17682	enterobacteriales	IncFII(p14)	92.02	263 / 262	ABNLSK010000012.1 Salmonella enterica strain PNUSAS364027 SAMN36613889-rid18820753.denovo.12, whole genome shotgun sequence	33612..33870																																																avrA	ABNLSK010000002.1	498418..498979	99.645	563	0	avrA	ABNLSK010000002.1	498979..499237	98.842	259	8.03e-131
GCA_032438355.1_PDT001822375.1_genomic.fna	Salmonella_enterica	0.521	401.349 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLSJ010000001.1 Salmonella enterica strain PNUSAS364141 SAMN36613905-rid18820773.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLSJ010000028.1 Salmonella enterica strain PNUSAS364141 SAMN36613905-rid18820773.guided.15, whole genome shotgun sequence	24917..25354	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLSJ010000019.1 Salmonella enterica strain PNUSAS364141 SAMN36613905-rid18820773.denovo.21, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNLSJ010000021.1 Salmonella enterica strain PNUSAS364141 SAMN36613905-rid18820773.denovo.24, whole genome shotgun sequence	3381..3642																																																avrA	ABNLSJ010000008.1	174740..175609	99.54	870	0						
GCA_032438375.1_PDT001822374.1_genomic.fna	Salmonella_enterica	0.5227	397.72 KB	6	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNLSL010000003.1 Salmonella enterica strain PNUSAS364142 SAMN36613899-rid18820763.denovo.03, whole genome shotgun sequence	256215..256652	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNLSL010000038.1 Salmonella enterica strain PNUSAS364142 SAMN36613899-rid18820763.guided.29, whole genome shotgun sequence	6175..6612	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLSL010000001.1	407821..408690	99.31	870	0						
GCA_032438435.1_PDT001822367.1_genomic.fna	Salmonella_enterica	0.5214	271.178 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA12,aph(3')-Ia,aac(6')-Iaa,aadA12,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	0		2	IncFIB(AP001918),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLSQ010000001.1 Salmonella enterica strain PNUSAS364029 SAMN36613894-rid18820693.denovo.01, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aadA12	100	792/792	ABNLSQ010000029.1 Salmonella enterica strain PNUSAS364029 SAMN36613894-rid18820693.denovo.31, whole genome shotgun sequence	8019..8810	Spectinomycin, Streptomycin	AY665771	aph(3')-Ia	100	816/816	ABNLSQ010000042.1 Salmonella enterica strain PNUSAS364029 SAMN36613894-rid18820693.denovo.49, whole genome shotgun sequence	397..1212	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EU722351	aac(6')-Iaa	100	438/438	ABNLSQ010000056.1 Salmonella enterica strain PNUSAS364029 SAMN36613894-rid18820693.guided.20, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aadA12	100	792/792	ABNLSQ010000058.1 Salmonella enterica strain PNUSAS364029 SAMN36613894-rid18820693.guided.32, whole genome shotgun sequence	5406..6197	Spectinomycin, Streptomycin	AY665771	aph(3')-Ia	100	816/816	ABNLSQ010000062.1 Salmonella enterica strain PNUSAS364029 SAMN36613894-rid18820693.guided.48, whole genome shotgun sequence	289..1104	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EU722351	blaTEM-1B	100	861/861	ABNLSQ010000032.1 Salmonella enterica strain PNUSAS364029 SAMN36613894-rid18820693.denovo.36, whole genome shotgun sequence	3706..4566	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNLSQ010000060.1 Salmonella enterica strain PNUSAS364029 SAMN36613894-rid18820693.guided.37, whole genome shotgun sequence	3883..4743	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	ABNLSQ010000029.1 Salmonella enterica strain PNUSAS364029 SAMN36613894-rid18820693.denovo.31, whole genome shotgun sequence	6675..7514	Sulfamethoxazole	U12338	sul1	100	840/840	ABNLSQ010000058.1 Salmonella enterica strain PNUSAS364029 SAMN36613894-rid18820693.guided.32, whole genome shotgun sequence	6702..7541	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNLSQ010000037.1 Salmonella enterica strain PNUSAS364029 SAMN36613894-rid18820693.denovo.43, whole genome shotgun sequence	1995..3194	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNLSQ010000061.1 Salmonella enterica strain PNUSAS364029 SAMN36613894-rid18820693.guided.42, whole genome shotgun sequence	2036..3235	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNLSQ010000035.1 Salmonella enterica strain PNUSAS364029 SAMN36613894-rid18820693.denovo.40, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII(S)	100	262 / 262	ABNLSQ010000025.1 Salmonella enterica strain PNUSAS364029 SAMN36613894-rid18820693.denovo.27, whole genome shotgun sequence	29377..29638																																																avrA	ABNLSQ010000004.1	173873..174742	99.885	870	0						
GCA_032438455.1_PDT001822366.1_genomic.fna	Salmonella_enterica	0.5178	138.714 KB	11	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	2	IncHI2,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLSR010000013.1 Salmonella enterica strain 23NM06CH01-S1 isolate PNUSAS364023 SAMN36613886-rid18820683.denovo.013, whole genome shotgun sequence	81360..81797	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLSR010000038.1 Salmonella enterica strain 23NM06CH01-S1 isolate PNUSAS364023 SAMN36613886-rid18820683.denovo.041, whole genome shotgun sequence	4472..5308	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNLSR010000038.1 Salmonella enterica strain 23NM06CH01-S1 isolate PNUSAS364023 SAMN36613886-rid18820683.denovo.041, whole genome shotgun sequence	3670..4472	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNLSR010000038.1 Salmonella enterica strain 23NM06CH01-S1 isolate PNUSAS364023 SAMN36613886-rid18820683.denovo.041, whole genome shotgun sequence	3669..4472	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNLSR010000038.1 Salmonella enterica strain 23NM06CH01-S1 isolate PNUSAS364023 SAMN36613886-rid18820683.denovo.041, whole genome shotgun sequence	3669..4472	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNLSR010000038.1 Salmonella enterica strain 23NM06CH01-S1 isolate PNUSAS364023 SAMN36613886-rid18820683.denovo.041, whole genome shotgun sequence	3669..4472	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNLSR010000101.1 Salmonella enterica strain 23NM06CH01-S1 isolate PNUSAS364023 SAMN36613886-rid18820683.guided.030, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLSR010000102.1 Salmonella enterica strain 23NM06CH01-S1 isolate PNUSAS364023 SAMN36613886-rid18820683.guided.039, whole genome shotgun sequence	4513..5349	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNLSR010000102.1 Salmonella enterica strain 23NM06CH01-S1 isolate PNUSAS364023 SAMN36613886-rid18820683.guided.039, whole genome shotgun sequence	3711..4513	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNLSR010000102.1 Salmonella enterica strain 23NM06CH01-S1 isolate PNUSAS364023 SAMN36613886-rid18820683.guided.039, whole genome shotgun sequence	3710..4513	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNLSR010000102.1 Salmonella enterica strain 23NM06CH01-S1 isolate PNUSAS364023 SAMN36613886-rid18820683.guided.039, whole genome shotgun sequence	3710..4513	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNLSR010000102.1 Salmonella enterica strain 23NM06CH01-S1 isolate PNUSAS364023 SAMN36613886-rid18820683.guided.039, whole genome shotgun sequence	3710..4513	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNLSR010000050.1 Salmonella enterica strain 23NM06CH01-S1 isolate PNUSAS364023 SAMN36613886-rid18820683.denovo.054, whole genome shotgun sequence	9675..10001	enterobacteriales	IncX1	100	373 / 373	ABNLSR010000060.1 Salmonella enterica strain 23NM06CH01-S1 isolate PNUSAS364023 SAMN36613886-rid18820683.denovo.064, whole genome shotgun sequence	1310..1682																																																avrA	ABNLSR010000030.1	39620..39693	100	74	1.14e-34						
GCA_032438475.1_PDT001822365.1_genomic.fna	Salmonella_enterica	0.5217	271.427 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLST010000002.1 Salmonella enterica strain PNUSAS364022 SAMN36613891-rid18820673.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLST010000047.1 Salmonella enterica strain PNUSAS364022 SAMN36613891-rid18820673.guided.20, whole genome shotgun sequence	31716..32153	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLST010000015.1 Salmonella enterica strain PNUSAS364022 SAMN36613891-rid18820673.denovo.15, whole genome shotgun sequence	86305..86947	enterobacteriales	IncFII(S)	100	262 / 262	ABNLST010000015.1 Salmonella enterica strain PNUSAS364022 SAMN36613891-rid18820673.denovo.15, whole genome shotgun sequence	70959..71220																																																avrA	ABNLST010000005.1	174651..175519	100	869	0						
GCA_032438495.1_PDT001822364.1_genomic.fna	Salmonella_enterica	0.5209	222.467 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLSV010000001.1 Salmonella enterica strain PNUSAS364026 SAMN36613888-rid18820643.denovo.01, whole genome shotgun sequence	207360..207797	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLSV010000050.1 Salmonella enterica strain PNUSAS364026 SAMN36613888-rid18820643.guided.25, whole genome shotgun sequence	25948..26385	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLSV010000023.1 Salmonella enterica strain PNUSAS364026 SAMN36613888-rid18820643.denovo.23, whole genome shotgun sequence	44700..45342	enterobacteriales	IncFII(S)	100	262 / 262	ABNLSV010000023.1 Salmonella enterica strain PNUSAS364026 SAMN36613888-rid18820643.denovo.23, whole genome shotgun sequence	29375..29636																																																avrA	ABNLSV010000002.1	208672..209541	99.885	870	0						
GCA_032438535.1_PDT001822363.1_genomic.fna	Salmonella_enterica	0.5223	397.629 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLSU010000001.1 Salmonella enterica strain PNUSAS364031 SAMN36613892-rid18820663.denovo.01, whole genome shotgun sequence	838577..839014	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLSU010000040.1 Salmonella enterica strain PNUSAS364031 SAMN36613892-rid18820663.guided.21, whole genome shotgun sequence	24980..25417	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLSU010000003.1	129893..130762	98.851	870	0						
GCA_032438555.1_PDT001822353.1_genomic.fna	Salmonella_enterica	0.5214	214.777 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	gyrA_p.D87Y	3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLSW010000001.1 Salmonella enterica strain PNUSAS364076 SAMN36612093-rid18820533.denovo.01, whole genome shotgun sequence	291604..292041	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLSW010000051.1 Salmonella enterica strain PNUSAS364076 SAMN36612093-rid18820533.guided.25, whole genome shotgun sequence	29686..30123	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNLSW010000044.1 Salmonella enterica strain PNUSAS364076 SAMN36612093-rid18820533.denovo.47, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNLSW010000054.1 Salmonella enterica strain PNUSAS364076 SAMN36612093-rid18820533.guided.48, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNLSW010000044.1 Salmonella enterica strain PNUSAS364076 SAMN36612093-rid18820533.denovo.47, whole genome shotgun sequence	1150..1280	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLSW010000021.1 Salmonella enterica strain PNUSAS364076 SAMN36612093-rid18820533.denovo.21, whole genome shotgun sequence	40540..41182		enterobacteriales	IncFII(S)	100	262 / 262	ABNLSW010000021.1 Salmonella enterica strain PNUSAS364076 SAMN36612093-rid18820533.denovo.21, whole genome shotgun sequence	55659..55920																																									avrA	ABNLSW010000011.1	175197..176066	99.54	870	0						
GCA_032438575.1_PDT001822352.1_genomic.fna	Salmonella_enterica	0.5211	406.317 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLSX010000001.1 Salmonella enterica strain PNUSAS364079 SAMN36612099-rid18820523.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLSX010000029.1 Salmonella enterica strain PNUSAS364079 SAMN36612099-rid18820523.guided.18, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLSX010000014.1 Salmonella enterica strain PNUSAS364079 SAMN36612099-rid18820523.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNLSX010000014.1 Salmonella enterica strain PNUSAS364079 SAMN36612099-rid18820523.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNLSX010000002.1	553636..554505	99.54	870	0						
GCA_032438595.1_PDT001822351.1_genomic.fna	Salmonella_enterica	0.5217	97.374 KB	15	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLSY010000047.1 Salmonella enterica strain PNUSAS364082 SAMN36612104-rid18820513.denovo.49, whole genome shotgun sequence	14137..14574	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLSY010000085.1 Salmonella enterica strain PNUSAS364082 SAMN36612104-rid18820513.guided.38, whole genome shotgun sequence	32398..32835	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLSY010000059.1 Salmonella enterica strain PNUSAS364082 SAMN36612104-rid18820513.denovo.61, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNLSY010000038.1 Salmonella enterica strain PNUSAS364082 SAMN36612104-rid18820513.denovo.39, whole genome shotgun sequence	34702..34963																																																avrA	ABNLSY010000005.1	99049..99918	99.54	870	0						
GCA_032438615.1_PDT001822348.1_genomic.fna	Salmonella_enterica	0.5211	89.49 KB	16	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLTF010000006.1 Salmonella enterica strain PNUSAS364075 SAMN36612091-rid18820483.denovo.06, whole genome shotgun sequence	12532..12969	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLTF010000094.1 Salmonella enterica strain PNUSAS364075 SAMN36612091-rid18820483.guided.61, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNLTF010000016.1 Salmonella enterica strain PNUSAS364075 SAMN36612091-rid18820483.denovo.16, whole genome shotgun sequence	65920..67125	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNLTF010000095.1 Salmonella enterica strain PNUSAS364075 SAMN36612091-rid18820483.guided.64, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNLTF010000016.1 Salmonella enterica strain PNUSAS364075 SAMN36612091-rid18820483.denovo.16, whole genome shotgun sequence	73511..73652	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNLTF010000095.1 Salmonella enterica strain PNUSAS364075 SAMN36612091-rid18820483.guided.64, whole genome shotgun sequence	3169..3310																																																avrA	ABNLTF010000005.1	105340..106209	99.425	870	0						
GCA_032438635.1_PDT001822349.1_genomic.fna	Salmonella_enterica	0.5208	199.319 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	4	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(B),tet(B),bleO,bleO	0		2	Col(pHAD28),IncFII(29)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLTB010000002.1 Salmonella enterica strain PNUSAS364078 SAMN36612097-rid18820493.denovo.02, whole genome shotgun sequence	296640..297077	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLTB010000074.1 Salmonella enterica strain PNUSAS364078 SAMN36612097-rid18820493.guided.29, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNLTB010000051.1 Salmonella enterica strain PNUSAS364078 SAMN36612097-rid18820493.denovo.55, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNLTB010000078.1 Salmonella enterica strain PNUSAS364078 SAMN36612097-rid18820493.guided.59, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	tet(B)	100	1206/1206	ABNLTB010000039.1 Salmonella enterica strain PNUSAS364078 SAMN36612097-rid18820493.denovo.42, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNLTB010000076.1 Salmonella enterica strain PNUSAS364078 SAMN36612097-rid18820493.guided.41, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777	bleO	100	392/399	ABNLTB010000056.1 Salmonella enterica strain PNUSAS364078 SAMN36612097-rid18820493.denovo.62, whole genome shotgun sequence	82..473	Bleomycin	AF051917	bleO	100	392/399	ABNLTB010000079.1 Salmonella enterica strain PNUSAS364078 SAMN36612097-rid18820493.guided.61, whole genome shotgun sequence	123..514	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	100	131 / 131	ABNLTB010000051.1 Salmonella enterica strain PNUSAS364078 SAMN36612097-rid18820493.denovo.55, whole genome shotgun sequence	1522..1652	enterobacteriales	IncFII(29)	95.38	260 / 259	ABNLTB010000029.1 Salmonella enterica strain PNUSAS364078 SAMN36612097-rid18820493.denovo.30, whole genome shotgun sequence	11437..11696																																																avrA	ABNLTB010000001.1	539642..540511	99.885	870	0						
GCA_032438755.1_PDT001821930.1_genomic.fna	Salmonella_enterica	0.5226	656.168 KB	2	aroC_213,dnaN_2,hemD_146,hisD_12,purE_6,sucA_20,thrA_17	Unknown	30:z:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_213	dnaN	100	100	dnaN_2	hemD	100	100	hemD_146	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_20	thrA	100	100	thrA_17	30	z	1,2	Salmonella enterica subspecies enterica (subspecies I)	I 30:z:1,2	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNLTG010000001.1 Salmonella enterica strain PNUSAS364134 SAMN36529429-rid18820133.denovo.01, whole genome shotgun sequence	1347309..1347746	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNLTG010000025.1 Salmonella enterica strain PNUSAS364134 SAMN36529429-rid18820133.guided.16, whole genome shotgun sequence	5647..6084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLTG010000002.1	561297..562166	99.54	870	0						
GCA_032438815.1_PDT001821914.1_genomic.fna	Salmonella_enterica	0.5227	335.422 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLTL010000002.1 Salmonella enterica strain PNUSAS364054 SAMN36524433-rid18819973.denovo.02, whole genome shotgun sequence	493929..494366	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLTL010000032.1 Salmonella enterica strain PNUSAS364054 SAMN36524433-rid18819973.guided.25, whole genome shotgun sequence	7742..8179	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032439065.1_PDT001917186.1_genomic.fna	Salmonella_enterica	0.5215	261.197 KB	5	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNLTR010000002.1 Salmonella enterica strain 23NC09GT04-S SAMN37684957-rid19626473.denovo.02, whole genome shotgun sequence	177744..178181	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNLTR010000037.1 Salmonella enterica strain 23NC09GT04-S SAMN37684957-rid19626473.guided.21, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLTR010000003.1	497500..498368	99.655	869	0						
GCA_032439095.1_PDT001917185.1_genomic.fna	Salmonella_enterica	0.519	228.57 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLTS010000008.1 Salmonella enterica strain 23NC09CL01-S SAMN37684958-rid19626463.denovo.08, whole genome shotgun sequence	86588..87025	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLTS010000029.1 Salmonella enterica strain 23NC09CL01-S SAMN37684958-rid19626463.denovo.29, whole genome shotgun sequence	33995..34831	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNLTS010000029.1 Salmonella enterica strain 23NC09CL01-S SAMN37684958-rid19626463.denovo.29, whole genome shotgun sequence	34831..35634	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNLTS010000076.1 Salmonella enterica strain 23NC09CL01-S SAMN37684958-rid19626463.guided.50, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNLTS010000076.1 Salmonella enterica strain 23NC09CL01-S SAMN37684958-rid19626463.guided.50, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNLTS010000077.1 Salmonella enterica strain 23NC09CL01-S SAMN37684958-rid19626463.guided.67, whole genome shotgun sequence	97..534	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNLTS010000044.1 Salmonella enterica strain 23NC09CL01-S SAMN37684958-rid19626463.denovo.46, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNLTS010000075.1 Salmonella enterica strain 23NC09CL01-S SAMN37684958-rid19626463.guided.47, whole genome shotgun sequence	4114..5319	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNLTS010000036.1 Salmonella enterica strain 23NC09CL01-S SAMN37684958-rid19626463.denovo.36, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNLTS010000029.1 Salmonella enterica strain 23NC09CL01-S SAMN37684958-rid19626463.denovo.29, whole genome shotgun sequence	33111..33372		enterobacteriales	IncFII	96.95	262 / 261	ABNLTS010000076.1 Salmonella enterica strain 23NC09CL01-S SAMN37684958-rid19626463.guided.50, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNLTS010000034.1 Salmonella enterica strain 23NC09CL01-S SAMN37684958-rid19626463.denovo.34, whole genome shotgun sequence	16993..17134		enterobacteriales	IncX1	100	373 / 373	ABNLTS010000042.1 Salmonella enterica strain 23NC09CL01-S SAMN37684958-rid19626463.denovo.44, whole genome shotgun sequence	2153..2525																											avrA	ABNLTS010000018.1	83195..84064	99.655	870	0						
GCA_032439105.1_PDT001917184.1_genomic.fna	Salmonella_enterica	0.5218	195.369 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLTU010000001.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNLTU010000034.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.denovo.38, whole genome shotgun sequence	8171..8962	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNLTU010000034.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.denovo.38, whole genome shotgun sequence	8171..8962	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNLTU010000041.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.denovo.48, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNLTU010000041.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.denovo.48, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNLTU010000056.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.guided.25, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNLTU010000060.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.guided.39, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNLTU010000060.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.guided.39, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNLTU010000062.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.guided.46, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNLTU010000062.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.guided.46, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNLTU010000038.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.denovo.44, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNLTU010000061.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.guided.42, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNLTU010000034.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.denovo.38, whole genome shotgun sequence	6827..7666	Sulfamethoxazole	U12338	sul1	100	840/840	ABNLTU010000060.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.guided.39, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNLTU010000029.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.denovo.30, whole genome shotgun sequence	5607..6806	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNLTU010000059.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.guided.36, whole genome shotgun sequence	972..2171	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNLTU010000030.1 Salmonella enterica strain 23NC09CG01-S SAMN37684959-rid19626453.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABNLTU010000002.1	149828..150697	99.655	870	0						
GCA_032439575.1_PDT001917158.1_genomic.fna	Salmonella_enterica	0.5203	391.756 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLUB010000001.1 Salmonella enterica strain PNUSAS388763 SAMN37684010-rid19626193.denovo.01, whole genome shotgun sequence	563827..564264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLUB010000031.1 Salmonella enterica strain PNUSAS388763 SAMN37684010-rid19626193.guided.16, whole genome shotgun sequence	26195..26632	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLUB010000011.1	179222..180090	99.195	870	0						
GCA_032439675.1_PDT001917052.1_genomic.fna	Salmonella_enterica	0.5222	312.143 KB	6	aroC_2,dnaN_4,hemD_40,hisD_43,purE_481,sucA_2,thrA_425	2125	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_4	hemD	100	100	hemD_40	hisD	100	100	hisD_43	purE	100	100	purE_481	sucA	100	100	sucA_2	thrA	100	100	thrA_425	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNLUE010000001.1 Salmonella enterica strain PNUSAS388092 SAMN37675452-rid19625343.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNLUE010000041.1 Salmonella enterica strain PNUSAS388092 SAMN37675452-rid19625343.guided.31, whole genome shotgun sequence	10647..11084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLUE010000011.1	99818..100687	99.77	870	0						
GCA_032439765.1_PDT001822350.1_genomic.fna	Salmonella_enterica	0.5207	87.159 KB	19	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLUJ010000045.1 Salmonella enterica strain PNUSAS364081 SAMN36612102-rid18820503.denovo.045, whole genome shotgun sequence	20183..20620	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLUJ010000117.1 Salmonella enterica strain PNUSAS364081 SAMN36612102-rid18820503.guided.064, whole genome shotgun sequence	10647..11084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLUJ010000067.1 Salmonella enterica strain PNUSAS364081 SAMN36612102-rid18820503.denovo.068, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNLUJ010000081.1 Salmonella enterica strain PNUSAS364081 SAMN36612102-rid18820503.denovo.082, whole genome shotgun sequence	3399..3660																																																avrA	ABNLUJ010000010.1	109048..109917	99.54	870	0						
GCA_032439925.1_PDT001821908.1_genomic.fna	Salmonella_enterica	0.521	405.406 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLUN010000001.1 Salmonella enterica strain PNUSAS363720 isolate CDPHFDLB-F15M02948-B SAMN36521323-rid18819913.denovo.01, whole genome shotgun sequence	482525..482962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLUN010000031.1 Salmonella enterica strain PNUSAS363720 isolate CDPHFDLB-F15M02948-B SAMN36521323-rid18819913.guided.17, whole genome shotgun sequence	13435..13872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032439945.1_PDT001821907.1_genomic.fna	Salmonella_enterica	0.5214	370.721 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLUQ010000001.1 Salmonella enterica strain PNUSAS363713 isolate CDPHFDLB-F14M01366-D SAMN36521325-rid18819903.denovo.01, whole genome shotgun sequence	609817..610254	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLUQ010000052.1 Salmonella enterica strain PNUSAS363713 isolate CDPHFDLB-F14M01366-D SAMN36521325-rid18819903.guided.27, whole genome shotgun sequence	2234..2671	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLUQ010000003.1	121617..122486	98.966	870	0						
GCA_032439975.1_PDT001821906.1_genomic.fna	Salmonella_enterica	0.5209	386.261 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLUP010000001.1 Salmonella enterica strain PNUSAS363716 isolate CDPHFDLB-F15M02945-B SAMN36521324-rid18819893.denovo.01, whole genome shotgun sequence	482525..482962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLUP010000042.1 Salmonella enterica strain PNUSAS363716 isolate CDPHFDLB-F15M02945-B SAMN36521324-rid18819893.guided.24, whole genome shotgun sequence	2798..3235	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.45	193 / 193	ABNLUP010000029.1 Salmonella enterica strain PNUSAS363716 isolate CDPHFDLB-F15M02945-B SAMN36521324-rid18819893.denovo.32, whole genome shotgun sequence	603..795																																																																	
GCA_032440005.1_PDT001821895.1_genomic.fna	Salmonella_enterica	0.5212	424.457 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLUS010000001.1 Salmonella enterica strain PNUSAS363709 isolate CDPHFDLB-F14M01367-A SAMN36521310-rid18819783.denovo.01, whole genome shotgun sequence	609817..610254	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLUS010000042.1 Salmonella enterica strain PNUSAS363709 isolate CDPHFDLB-F14M01367-A SAMN36521310-rid18819783.guided.25, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNLUS010000029.1 Salmonella enterica strain PNUSAS363709 isolate CDPHFDLB-F14M01367-A SAMN36521310-rid18819783.denovo.32, whole genome shotgun sequence	804..996																																																						avrA	ABNLUS010000003.1	121617..122486	98.966	870	0						
GCA_032440025.1_PDT001821894.1_genomic.fna	Salmonella_enterica	0.5214	370.721 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLUU010000001.1 Salmonella enterica strain PNUSAS363707 isolate CDPHFDLB-F14M01368-A SAMN36521307-rid18819773.denovo.01, whole genome shotgun sequence	609817..610254	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLUU010000041.1 Salmonella enterica strain PNUSAS363707 isolate CDPHFDLB-F14M01368-A SAMN36521307-rid18819773.guided.25, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNLUU010000031.1 Salmonella enterica strain PNUSAS363707 isolate CDPHFDLB-F14M01368-A SAMN36521307-rid18819773.denovo.35, whole genome shotgun sequence	804..996																																																						avrA	ABNLUU010000003.1	121617..122486	98.966	870	0						
GCA_032440045.1_PDT001821899.1_genomic.fna	Salmonella_enterica	0.5213	402.323 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),ColpVC,ColpVC	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLUT010000001.1 Salmonella enterica strain PNUSAS363710 isolate CDPHFDLB-F15M02959-A SAMN36521326-rid18819823.denovo.01, whole genome shotgun sequence	482424..482861	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLUT010000040.1 Salmonella enterica strain PNUSAS363710 isolate CDPHFDLB-F15M02959-A SAMN36521326-rid18819823.guided.27, whole genome shotgun sequence	2963..3400	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	94.96	119 / 131	ABNLUT010000021.1 Salmonella enterica strain PNUSAS363710 isolate CDPHFDLB-F15M02959-A SAMN36521326-rid18819823.denovo.23, whole genome shotgun sequence	3997..4115	enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNLUT010000026.1 Salmonella enterica strain PNUSAS363710 isolate CDPHFDLB-F15M02959-A SAMN36521326-rid18819823.denovo.29, whole genome shotgun sequence	967..1095		enterobacteriales	ColpVC	96.89	193 / 193	ABNLUT010000028.1 Salmonella enterica strain PNUSAS363710 isolate CDPHFDLB-F15M02959-A SAMN36521326-rid18819823.denovo.31, whole genome shotgun sequence	855..1047		enterobacteriales	ColpVC	98.45	193 / 193	ABNLUT010000029.1 Salmonella enterica strain PNUSAS363710 isolate CDPHFDLB-F15M02959-A SAMN36521326-rid18819823.denovo.32, whole genome shotgun sequence	603..795																																													
GCA_032440055.1_PDT001821901.1_genomic.fna	Salmonella_enterica	0.5214	370.721 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLUR010000001.1 Salmonella enterica strain PNUSAS363714 isolate CDPHFDLB-F14M01367-B SAMN36521327-rid18819843.denovo.01, whole genome shotgun sequence	609817..610254	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLUR010000053.1 Salmonella enterica strain PNUSAS363714 isolate CDPHFDLB-F14M01367-B SAMN36521327-rid18819843.guided.27, whole genome shotgun sequence	7743..8180	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNLUR010000035.1 Salmonella enterica strain PNUSAS363714 isolate CDPHFDLB-F14M01367-B SAMN36521327-rid18819843.denovo.38, whole genome shotgun sequence	804..996																																																						avrA	ABNLUR010000002.1	121617..122486	98.966	870	0						
GCA_032440085.1_PDT001821893.1_genomic.fna	Salmonella_enterica	0.5213	402.323 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLUV010000001.1 Salmonella enterica strain PNUSAS363719 isolate CDPHFDLB-F15M02948-A SAMN36521311-rid18819763.denovo.01, whole genome shotgun sequence	482518..482955	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLUV010000034.1 Salmonella enterica strain PNUSAS363719 isolate CDPHFDLB-F15M02948-A SAMN36521311-rid18819763.guided.19, whole genome shotgun sequence	4656..5093	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.45	193 / 193	ABNLUV010000022.1 Salmonella enterica strain PNUSAS363719 isolate CDPHFDLB-F15M02948-A SAMN36521311-rid18819763.denovo.26, whole genome shotgun sequence	603..795																																																																	
GCA_032440105.1_PDT001821892.1_genomic.fna	Salmonella_enterica	0.5215	370.721 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLUX010000001.1 Salmonella enterica strain PNUSAS363718 isolate CDPHFDLB-F14M01368-B SAMN36521308-rid18819753.denovo.01, whole genome shotgun sequence	609817..610254	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLUX010000051.1 Salmonella enterica strain PNUSAS363718 isolate CDPHFDLB-F14M01368-B SAMN36521308-rid18819753.guided.27, whole genome shotgun sequence	8820..9257	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLUX010000003.1	121617..122486	98.966	870	0						
GCA_032440125.1_PDT001821891.1_genomic.fna	Salmonella_enterica	0.5213	386.826 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLUY010000001.1 Salmonella enterica strain PNUSAS363708 isolate CDPHFDLB-F14M01368-C SAMN36521309-rid18819743.denovo.01, whole genome shotgun sequence	609817..610254	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLUY010000037.1 Salmonella enterica strain PNUSAS363708 isolate CDPHFDLB-F14M01368-C SAMN36521309-rid18819743.guided.28, whole genome shotgun sequence	1186..1623	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNLUY010000029.1 Salmonella enterica strain PNUSAS363708 isolate CDPHFDLB-F14M01368-C SAMN36521309-rid18819743.denovo.32, whole genome shotgun sequence	804..996																																																						avrA	ABNLUY010000002.1	121617..122486	98.966	870	0						
GCA_032440145.1_PDT001821890.1_genomic.fna	Salmonella_enterica	0.5214	284.162 KB	6	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLUZ010000005.1 Salmonella enterica strain PNUSAS363717 isolate CDPHFDLB-F14M01367-C SAMN36521306-rid18819733.denovo.05, whole genome shotgun sequence	105407..105844	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLUZ010000056.1 Salmonella enterica strain PNUSAS363717 isolate CDPHFDLB-F14M01367-C SAMN36521306-rid18819733.guided.33, whole genome shotgun sequence	3649..4086	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLUZ010000002.1	121617..122486	98.966	870	0						
GCA_032440305.1_PDT001821882.1_genomic.fna	Salmonella_enterica	0.5205	406.451 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLVG010000001.1 Salmonella enterica strain 23MDFML006204A5 SAMN36521216-rid18819653.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLVG010000033.1 Salmonella enterica strain 23MDFML006204A5 SAMN36521216-rid18819653.guided.31, whole genome shotgun sequence	155..592	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLVG010000020.1 Salmonella enterica strain 23MDFML006204A5 SAMN36521216-rid18819653.denovo.21, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNLVG010000021.1 Salmonella enterica strain 23MDFML006204A5 SAMN36521216-rid18819653.denovo.22, whole genome shotgun sequence	3403..3664		enterobacteriales	IncX1	98.93	374 / 374	ABNLVG010000016.1 Salmonella enterica strain 23MDFML006204A5 SAMN36521216-rid18819653.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABNLVG010000002.1	553362..554231	99.54	870	0						
GCA_032440325.1_PDT001821881.1_genomic.fna	Salmonella_enterica	0.5206	406.451 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLVH010000001.1 Salmonella enterica strain 23MDFML006204A8 SAMN36521217-rid18819643.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLVH010000035.1 Salmonella enterica strain 23MDFML006204A8 SAMN36521217-rid18819643.guided.26, whole genome shotgun sequence	812..1249	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLVH010000018.1 Salmonella enterica strain 23MDFML006204A8 SAMN36521217-rid18819643.denovo.18, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNLVH010000018.1 Salmonella enterica strain 23MDFML006204A8 SAMN36521217-rid18819643.denovo.18, whole genome shotgun sequence	53092..53353		enterobacteriales	IncX1	98.93	374 / 374	ABNLVH010000019.1 Salmonella enterica strain 23MDFML006204A8 SAMN36521217-rid18819643.denovo.19, whole genome shotgun sequence	32011..32384																																									avrA	ABNLVH010000007.1	175099..175968	99.54	870	0						
GCA_032440345.1_PDT001821880.1_genomic.fna	Salmonella_enterica	0.5206	406.91 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLVI010000001.1 Salmonella enterica strain 23MDFML006204A9 SAMN36521218-rid18819633.denovo.01, whole genome shotgun sequence	493643..494080	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLVI010000029.1 Salmonella enterica strain 23MDFML006204A9 SAMN36521218-rid18819633.guided.25, whole genome shotgun sequence	946..1383	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLVI010000015.1 Salmonella enterica strain 23MDFML006204A9 SAMN36521218-rid18819633.denovo.15, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNLVI010000015.1 Salmonella enterica strain 23MDFML006204A9 SAMN36521218-rid18819633.denovo.15, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNLVI010000016.1 Salmonella enterica strain 23MDFML006204A9 SAMN36521218-rid18819633.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNLVI010000007.1	174754..175623	99.54	870	0						
GCA_032440365.1_PDT001821879.1_genomic.fna	Salmonella_enterica	0.5207	284.087 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLVJ010000001.1 Salmonella enterica strain 23MDFML006205A4 SAMN36521219-rid18819623.denovo.01, whole genome shotgun sequence	506295..506732	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLVJ010000034.1 Salmonella enterica strain 23MDFML006205A4 SAMN36521219-rid18819623.guided.25, whole genome shotgun sequence	4302..4739	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLVJ010000022.1 Salmonella enterica strain 23MDFML006205A4 SAMN36521219-rid18819623.denovo.23, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNLVJ010000024.1 Salmonella enterica strain 23MDFML006205A4 SAMN36521219-rid18819623.denovo.26, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	98.93	374 / 374	ABNLVJ010000018.1 Salmonella enterica strain 23MDFML006205A4 SAMN36521219-rid18819623.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABNLVJ010000006.1	175109..175978	99.54	870	0						
GCA_032440425.1_PDT001821876.1_genomic.fna	Salmonella_enterica	0.5193	237.255 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLVM010000015.1 Salmonella enterica strain 23MDFML006223A5 SAMN36521222-rid18819593.denovo.15, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLVM010000041.1 Salmonella enterica strain 23MDFML006223A5 SAMN36521222-rid18819593.denovo.43, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNLVM010000041.1 Salmonella enterica strain 23MDFML006223A5 SAMN36521222-rid18819593.denovo.43, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNLVM010000068.1 Salmonella enterica strain 23MDFML006223A5 SAMN36521222-rid18819593.guided.51, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNLVM010000068.1 Salmonella enterica strain 23MDFML006223A5 SAMN36521222-rid18819593.guided.51, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNLVM010000070.1 Salmonella enterica strain 23MDFML006223A5 SAMN36521222-rid18819593.guided.58, whole genome shotgun sequence	1704..2141	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNLVM010000046.1 Salmonella enterica strain 23MDFML006223A5 SAMN36521222-rid18819593.denovo.48, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNLVM010000069.1 Salmonella enterica strain 23MDFML006223A5 SAMN36521222-rid18819593.guided.55, whole genome shotgun sequence	481..1686	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNLVM010000035.1 Salmonella enterica strain 23MDFML006223A5 SAMN36521222-rid18819593.denovo.36, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNLVM010000041.1 Salmonella enterica strain 23MDFML006223A5 SAMN36521222-rid18819593.denovo.43, whole genome shotgun sequence	5800..6061		enterobacteriales	IncFII	96.95	262 / 261	ABNLVM010000068.1 Salmonella enterica strain 23MDFML006223A5 SAMN36521222-rid18819593.guided.51, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNLVM010000028.1 Salmonella enterica strain 23MDFML006223A5 SAMN36521222-rid18819593.denovo.28, whole genome shotgun sequence	33445..33586		enterobacteriales	IncX1	100	373 / 373	ABNLVM010000040.1 Salmonella enterica strain 23MDFML006223A5 SAMN36521222-rid18819593.denovo.41, whole genome shotgun sequence	2153..2525																											avrA	ABNLVM010000016.1	102634..103503	99.655	870	0						
GCA_032440445.1_PDT001821878.1_genomic.fna	Salmonella_enterica	0.5206	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLVK010000001.1 Salmonella enterica strain 23MDFML006205A7 SAMN36521220-rid18819613.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLVK010000024.1 Salmonella enterica strain 23MDFML006205A7 SAMN36521220-rid18819613.guided.21, whole genome shotgun sequence	814..1251	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLVK010000012.1 Salmonella enterica strain 23MDFML006205A7 SAMN36521220-rid18819613.denovo.12, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNLVK010000012.1 Salmonella enterica strain 23MDFML006205A7 SAMN36521220-rid18819613.denovo.12, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNLVK010000013.1 Salmonella enterica strain 23MDFML006205A7 SAMN36521220-rid18819613.denovo.13, whole genome shotgun sequence	32011..32384																																									avrA	ABNLVK010000002.1	553362..554231	99.54	870	0						
GCA_032440465.1_PDT001821875.1_genomic.fna	Salmonella_enterica	0.5193	240.148 KB	7	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLVN010000013.1 Salmonella enterica strain 23MDFML006223A6 SAMN36521223-rid18819583.denovo.13, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLVN010000040.1 Salmonella enterica strain 23MDFML006223A6 SAMN36521223-rid18819583.denovo.41, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNLVN010000040.1 Salmonella enterica strain 23MDFML006223A6 SAMN36521223-rid18819583.denovo.41, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNLVN010000065.1 Salmonella enterica strain 23MDFML006223A6 SAMN36521223-rid18819583.guided.49, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNLVN010000065.1 Salmonella enterica strain 23MDFML006223A6 SAMN36521223-rid18819583.guided.49, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNLVN010000067.1 Salmonella enterica strain 23MDFML006223A6 SAMN36521223-rid18819583.guided.58, whole genome shotgun sequence	801..1238	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNLVN010000044.1 Salmonella enterica strain 23MDFML006223A6 SAMN36521223-rid18819583.denovo.45, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNLVN010000066.1 Salmonella enterica strain 23MDFML006223A6 SAMN36521223-rid18819583.guided.51, whole genome shotgun sequence	1151..2356	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNLVN010000034.1 Salmonella enterica strain 23MDFML006223A6 SAMN36521223-rid18819583.denovo.35, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNLVN010000040.1 Salmonella enterica strain 23MDFML006223A6 SAMN36521223-rid18819583.denovo.41, whole genome shotgun sequence	5800..6061		enterobacteriales	IncFII	96.95	262 / 261	ABNLVN010000065.1 Salmonella enterica strain 23MDFML006223A6 SAMN36521223-rid18819583.guided.49, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNLVN010000026.1 Salmonella enterica strain 23MDFML006223A6 SAMN36521223-rid18819583.denovo.26, whole genome shotgun sequence	33445..33586		enterobacteriales	IncX1	100	373 / 373	ABNLVN010000043.1 Salmonella enterica strain 23MDFML006223A6 SAMN36521223-rid18819583.denovo.44, whole genome shotgun sequence	2153..2525																											avrA	ABNLVN010000014.1	102634..103503	99.655	870	0						
GCA_032440485.1_PDT001821874.1_genomic.fna	Salmonella_enterica	0.5205	489.863 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLVO010000001.1 Salmonella enterica strain 23MDFML006223A7 SAMN36521224-rid18819573.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLVO010000027.1 Salmonella enterica strain 23MDFML006223A7 SAMN36521224-rid18819573.guided.18, whole genome shotgun sequence	27..464	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLVO010000012.1 Salmonella enterica strain 23MDFML006223A7 SAMN36521224-rid18819573.denovo.13, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNLVO010000012.1 Salmonella enterica strain 23MDFML006223A7 SAMN36521224-rid18819573.denovo.13, whole genome shotgun sequence	53092..53353		enterobacteriales	IncX1	98.93	374 / 374	ABNLVO010000013.1 Salmonella enterica strain 23MDFML006223A7 SAMN36521224-rid18819573.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNLVO010000002.1	553362..554231	99.54	870	0						
GCA_032440505.1_PDT001821877.1_genomic.fna	Salmonella_enterica	0.5207	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLVL010000001.1 Salmonella enterica strain 23MDFML006205A8 SAMN36521221-rid18819603.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLVL010000029.1 Salmonella enterica strain 23MDFML006205A8 SAMN36521221-rid18819603.guided.19, whole genome shotgun sequence	8670..9107	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLVL010000012.1 Salmonella enterica strain 23MDFML006205A8 SAMN36521221-rid18819603.denovo.12, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABNLVL010000017.1 Salmonella enterica strain 23MDFML006205A8 SAMN36521221-rid18819603.denovo.20, whole genome shotgun sequence	3403..3664		enterobacteriales	IncX1	98.93	374 / 374	ABNLVL010000013.1 Salmonella enterica strain 23MDFML006205A8 SAMN36521221-rid18819603.denovo.13, whole genome shotgun sequence	32011..32384																																									avrA	ABNLVL010000002.1	553362..554231	99.54	870	0						
GCA_032440545.1_PDT001821870.1_genomic.fna	Salmonella_enterica	0.5206	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLVP010000001.1 Salmonella enterica strain 23MDFML006224B7 SAMN36521228-rid18819533.denovo.01, whole genome shotgun sequence	512215..512652	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLVP010000027.1 Salmonella enterica strain 23MDFML006224B7 SAMN36521228-rid18819533.guided.17, whole genome shotgun sequence	12729..13166	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLVP010000013.1 Salmonella enterica strain 23MDFML006224B7 SAMN36521228-rid18819533.denovo.13, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNLVP010000013.1 Salmonella enterica strain 23MDFML006224B7 SAMN36521228-rid18819533.denovo.13, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNLVP010000014.1 Salmonella enterica strain 23MDFML006224B7 SAMN36521228-rid18819533.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNLVP010000002.1	553547..554416	99.54	870	0						
GCA_032440805.1_PDT001821873.1_genomic.fna	Salmonella_enterica	0.5206	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLWF010000001.1 Salmonella enterica strain 23MDFML006224B2 SAMN36521225-rid18819563.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLWF010000026.1 Salmonella enterica strain 23MDFML006224B2 SAMN36521225-rid18819563.guided.19, whole genome shotgun sequence	4119..4556	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLWF010000012.1 Salmonella enterica strain 23MDFML006224B2 SAMN36521225-rid18819563.denovo.12, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNLWF010000012.1 Salmonella enterica strain 23MDFML006224B2 SAMN36521225-rid18819563.denovo.12, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNLWF010000013.1 Salmonella enterica strain 23MDFML006224B2 SAMN36521225-rid18819563.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNLWF010000002.1	553362..554231	99.54	870	0						
GCA_032440825.1_PDT001821872.1_genomic.fna	Salmonella_enterica	0.5203	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLWG010000001.1 Salmonella enterica strain 23MDFML006224B4 SAMN36521226-rid18819553.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLWG010000026.1 Salmonella enterica strain 23MDFML006224B4 SAMN36521226-rid18819553.guided.14, whole genome shotgun sequence	34099..34536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLWG010000012.1 Salmonella enterica strain 23MDFML006224B4 SAMN36521226-rid18819553.denovo.13, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNLWG010000012.1 Salmonella enterica strain 23MDFML006224B4 SAMN36521226-rid18819553.denovo.13, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNLWG010000013.1 Salmonella enterica strain 23MDFML006224B4 SAMN36521226-rid18819553.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNLWG010000002.1	553362..554231	99.54	870	0						
GCA_032440845.1_PDT001821871.1_genomic.fna	Salmonella_enterica	0.5203	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLWH010000001.1 Salmonella enterica strain 23MDFML006224B6 SAMN36521227-rid18819543.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLWH010000027.1 Salmonella enterica strain 23MDFML006224B6 SAMN36521227-rid18819543.guided.14, whole genome shotgun sequence	33968..34405	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLWH010000012.1 Salmonella enterica strain 23MDFML006224B6 SAMN36521227-rid18819543.denovo.13, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNLWH010000017.1 Salmonella enterica strain 23MDFML006224B6 SAMN36521227-rid18819543.denovo.20, whole genome shotgun sequence	3446..3707		enterobacteriales	IncX1	98.93	374 / 374	ABNLWH010000013.1 Salmonella enterica strain 23MDFML006224B6 SAMN36521227-rid18819543.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNLWH010000002.1	553362..554231	99.54	870	0						
GCA_032440905.1_PDT001821865.1_genomic.fna	Salmonella_enterica	0.5222	382.65 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLWK010000004.1 Salmonella enterica strain PNUSAS363946 SAMN36521093-rid18819483.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLWK010000038.1 Salmonella enterica strain PNUSAS363946 SAMN36521093-rid18819483.guided.28, whole genome shotgun sequence	8771..9208	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNLWK010000039.1 Salmonella enterica strain PNUSAS363946 SAMN36521093-rid18819483.guided.29, whole genome shotgun sequence	8771..9208	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																							enterobacteriales	IncFIB(S)	100	643 / 643	ABNLWK010000015.1 Salmonella enterica strain PNUSAS363946 SAMN36521093-rid18819483.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNLWK010000015.1 Salmonella enterica strain PNUSAS363946 SAMN36521093-rid18819483.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNLWK010000001.1	446730..447598	100	869	0						
GCA_032440945.1_PDT001821863.1_genomic.fna	Salmonella_enterica	0.523	437.761 KB	4	aroC_46,dnaN_54,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	127	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_54	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNLWM010000001.1 Salmonella enterica strain PNUSAS363949 SAMN36521079-rid18819463.denovo.01, whole genome shotgun sequence	667219..667656	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNLWM010000024.1 Salmonella enterica strain PNUSAS363949 SAMN36521079-rid18819463.guided.20, whole genome shotgun sequence	2096..2533	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLWM010000002.1	408167..409036	99.31	870	0						
GCA_032441025.1_PDT001821858.1_genomic.fna	Salmonella_enterica	0.5224	500.735 KB	4	aroC_127,dnaN_81,hemD_1009,hisD_564,purE_140,sucA_226,thrA_41	Unknown	13:b:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_127	dnaN	100	100	dnaN_81	hemD	100	100	hemD_1009	hisD	100	100	hisD_564	purE	100	100	purE_140	sucA	100	100	sucA_226	thrA	100	100	thrA_41	13	b	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Durham		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNLWR010000001.1 Salmonella enterica strain PNUSAS363937 SAMN36521102-rid18819413.denovo.01, whole genome shotgun sequence	308872..309309	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNLWR010000033.1 Salmonella enterica strain PNUSAS363937 SAMN36521102-rid18819413.guided.26, whole genome shotgun sequence	3467..3904	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLWR010000004.1	140409..141278	98.966	870	0						
GCA_032441065.1_PDT001821854.1_genomic.fna	Salmonella_enterica	0.5211	406.452 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLWW010000001.1 Salmonella enterica strain PNUSAS363940 SAMN36521099-rid18819373.denovo.01, whole genome shotgun sequence	162457..162894	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLWW010000027.1 Salmonella enterica strain PNUSAS363940 SAMN36521099-rid18819373.guided.23, whole genome shotgun sequence	607..1044	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLWW010000018.1 Salmonella enterica strain PNUSAS363940 SAMN36521099-rid18819373.denovo.19, whole genome shotgun sequence	14023..14665	enterobacteriales	IncFII(S)	100	262 / 262	ABNLWW010000015.1 Salmonella enterica strain PNUSAS363940 SAMN36521099-rid18819373.denovo.16, whole genome shotgun sequence	4987..5248																																																avrA	ABNLWW010000006.1	175196..176065	99.54	870	0						
GCA_032441085.1_PDT001821857.1_genomic.fna	Salmonella_enterica	0.5202	145.793 KB	12	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNLWS010000012.1 Salmonella enterica strain PNUSAS364052 SAMN36521164-rid18819403.denovo.12, whole genome shotgun sequence	12854..13288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNLWS010000070.1 Salmonella enterica strain PNUSAS364052 SAMN36521164-rid18819403.guided.52, whole genome shotgun sequence	8844..9278	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032441105.1_PDT001821856.1_genomic.fna	Salmonella_enterica	0.5216	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLWT010000004.1 Salmonella enterica strain PNUSAS363924 SAMN36521109-rid18819393.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLWT010000052.1 Salmonella enterica strain PNUSAS363924 SAMN36521109-rid18819393.guided.33, whole genome shotgun sequence	2254..2691	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLWT010000018.1 Salmonella enterica strain PNUSAS363924 SAMN36521109-rid18819393.denovo.18, whole genome shotgun sequence	48431..49073	enterobacteriales	IncFII(S)	100	262 / 262	ABNLWT010000018.1 Salmonella enterica strain PNUSAS363924 SAMN36521109-rid18819393.denovo.18, whole genome shotgun sequence	64157..64418																																																avrA	ABNLWT010000005.1	174735..175603	100	869	0						
GCA_032441125.1_PDT001821855.1_genomic.fna	Salmonella_enterica	0.5207	810.932 KB	2	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLWU010000001.1 Salmonella enterica strain PNUSAS363932 SAMN36521087-rid18819383.denovo.01, whole genome shotgun sequence	1406574..1407011	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLWU010000027.1 Salmonella enterica strain PNUSAS363932 SAMN36521087-rid18819383.guided.20, whole genome shotgun sequence	2902..3339	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNLWU010000012.1 Salmonella enterica strain PNUSAS363932 SAMN36521087-rid18819383.denovo.13, whole genome shotgun sequence	11468..12110																																																						avrA	ABNLWU010000002.1	669960..670829	99.425	870	0						
GCA_032441145.1_PDT001821853.1_genomic.fna	Salmonella_enterica	0.5215	494.592 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNLWV010000001.1 Salmonella enterica strain PNUSAS363943 SAMN36521096-rid18819363.denovo.01, whole genome shotgun sequence	814929..815366	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNLWV010000024.1 Salmonella enterica strain PNUSAS363943 SAMN36521096-rid18819363.guided.17, whole genome shotgun sequence	7672..8109	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLWV010000008.1	93872..94741	99.425	870	0						
GCA_032441165.1_PDT001821851.1_genomic.fna	Salmonella_enterica	0.5215	330.553 KB	5	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLWY010000001.1 Salmonella enterica strain PNUSAS364050 SAMN36521167-rid18819343.denovo.01, whole genome shotgun sequence	645844..646281	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLWY010000035.1 Salmonella enterica strain PNUSAS364050 SAMN36521167-rid18819343.guided.26, whole genome shotgun sequence	1784..2221	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLWY010000003.1	149669..150538	99.425	870	0						
GCA_032441175.1_PDT001821850.1_genomic.fna	Salmonella_enterica	0.5203	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNLWZ010000010.1 Salmonella enterica strain PNUSAS363952 SAMN36521077-rid18819333.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNLWZ010000056.1 Salmonella enterica strain PNUSAS363952 SAMN36521077-rid18819333.guided.44, whole genome shotgun sequence	2353..2787	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																																						
GCA_032441225.1_PDT001821849.1_genomic.fna	Salmonella_enterica	0.5207	707.807 KB	2	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLXA010000001.1 Salmonella enterica strain PNUSAS363928 SAMN36521103-rid18819323.denovo.01, whole genome shotgun sequence	624561..624998	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLXA010000019.1 Salmonella enterica strain PNUSAS363928 SAMN36521103-rid18819323.guided.15, whole genome shotgun sequence	3381..3818	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032441245.1_PDT001821848.1_genomic.fna	Salmonella_enterica	0.5215	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLXE010000003.1 Salmonella enterica strain PNUSAS363929 SAMN36521090-rid18819313.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLXE010000053.1 Salmonella enterica strain PNUSAS363929 SAMN36521090-rid18819313.guided.43, whole genome shotgun sequence	369..806	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLXE010000016.1 Salmonella enterica strain PNUSAS363929 SAMN36521090-rid18819313.denovo.16, whole genome shotgun sequence	48448..49090	enterobacteriales	IncFII(S)	100	262 / 262	ABNLXE010000016.1 Salmonella enterica strain PNUSAS363929 SAMN36521090-rid18819313.denovo.16, whole genome shotgun sequence	64175..64436																																																avrA	ABNLXE010000005.1	174743..175611	100	869	0						
GCA_032441285.1_PDT001821846.1_genomic.fna	Salmonella_enterica	0.5216	128.727 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_112,sucA_9,thrA_2	313	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_112	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLXF010000001.1 Salmonella enterica strain PNUSAS364047 SAMN36521166-rid18819293.denovo.01, whole genome shotgun sequence	386034..386471	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLXF010000066.1 Salmonella enterica strain PNUSAS364047 SAMN36521166-rid18819293.guided.31, whole genome shotgun sequence	36817..37254	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLXF010000016.1 Salmonella enterica strain PNUSAS364047 SAMN36521166-rid18819293.denovo.16, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNLXF010000016.1 Salmonella enterica strain PNUSAS364047 SAMN36521166-rid18819293.denovo.16, whole genome shotgun sequence	22546..22807																																																avrA	ABNLXF010000006.1	108506..109375	99.885	870	0						
GCA_032441325.1_PDT001821842.1_genomic.fna	Salmonella_enterica	0.5218	177.951 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLXH010000001.1 Salmonella enterica strain PNUSAS364051 SAMN36521165-rid18819253.denovo.01, whole genome shotgun sequence	223985..224422	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLXH010000048.1 Salmonella enterica strain PNUSAS364051 SAMN36521165-rid18819253.denovo.53, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNLXH010000048.1 Salmonella enterica strain PNUSAS364051 SAMN36521165-rid18819253.denovo.53, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNLXH010000058.1 Salmonella enterica strain PNUSAS364051 SAMN36521165-rid18819253.guided.41, whole genome shotgun sequence	10412..10849	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLXH010000061.1 Salmonella enterica strain PNUSAS364051 SAMN36521165-rid18819253.guided.51, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNLXH010000061.1 Salmonella enterica strain PNUSAS364051 SAMN36521165-rid18819253.guided.51, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNLXH010000053.1 Salmonella enterica strain PNUSAS364051 SAMN36521165-rid18819253.denovo.58, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNLXH010000062.1 Salmonella enterica strain PNUSAS364051 SAMN36521165-rid18819253.guided.59, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNLXH010000048.1 Salmonella enterica strain PNUSAS364051 SAMN36521165-rid18819253.denovo.53, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNLXH010000061.1 Salmonella enterica strain PNUSAS364051 SAMN36521165-rid18819253.guided.51, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNLXH010000041.1 Salmonella enterica strain PNUSAS364051 SAMN36521165-rid18819253.denovo.43, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNLXH010000060.1 Salmonella enterica strain PNUSAS364051 SAMN36521165-rid18819253.guided.46, whole genome shotgun sequence	3720..4925	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNLXH010000002.1	508772..509641	99.885	870	0						
GCA_032441345.1_PDT001821843.1_genomic.fna	Salmonella_enterica	0.5227	390.651 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNLXG010000001.1 Salmonella enterica strain PNUSAS363925 SAMN36521106-rid18819263.denovo.01, whole genome shotgun sequence	1374582..1375019	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLXG010000018.1 Salmonella enterica strain PNUSAS363925 SAMN36521106-rid18819263.denovo.20, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNLXG010000018.1 Salmonella enterica strain PNUSAS363925 SAMN36521106-rid18819263.denovo.20, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNLXG010000018.1 Salmonella enterica strain PNUSAS363925 SAMN36521106-rid18819263.denovo.20, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNLXG010000018.1 Salmonella enterica strain PNUSAS363925 SAMN36521106-rid18819263.denovo.20, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNLXG010000018.1 Salmonella enterica strain PNUSAS363925 SAMN36521106-rid18819263.denovo.20, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNLXG010000035.1 Salmonella enterica strain PNUSAS363925 SAMN36521106-rid18819263.guided.24, whole genome shotgun sequence	2576..3013	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNLXG010000036.1 Salmonella enterica strain PNUSAS363925 SAMN36521106-rid18819263.guided.25, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNLXG010000036.1 Salmonella enterica strain PNUSAS363925 SAMN36521106-rid18819263.guided.25, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNLXG010000036.1 Salmonella enterica strain PNUSAS363925 SAMN36521106-rid18819263.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNLXG010000036.1 Salmonella enterica strain PNUSAS363925 SAMN36521106-rid18819263.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNLXG010000036.1 Salmonella enterica strain PNUSAS363925 SAMN36521106-rid18819263.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNLXG010000019.1 Salmonella enterica strain PNUSAS363925 SAMN36521106-rid18819263.denovo.22, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNLXG010000034.1 Salmonella enterica strain PNUSAS363925 SAMN36521106-rid18819263.guided.21, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNLXG010000023.1 Salmonella enterica strain PNUSAS363925 SAMN36521106-rid18819263.denovo.28, whole genome shotgun sequence	805..997																																																						avrA	ABNLXG010000007.1	140068..140937	99.655	870	0						
GCA_032441365.1_PDT001821841.1_genomic.fna	Salmonella_enterica	0.5208	245.733 KB	8	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNLXI010000003.1 Salmonella enterica strain PNUSAS364053 SAMN36521162-rid18819243.denovo.03, whole genome shotgun sequence	86012..86449	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNLXI010000044.1 Salmonella enterica strain PNUSAS364053 SAMN36521162-rid18819243.guided.36, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNLXI010000038.1 Salmonella enterica strain PNUSAS364053 SAMN36521162-rid18819243.denovo.41, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNLXI010000046.1 Salmonella enterica strain PNUSAS364053 SAMN36521162-rid18819243.guided.43, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNLXI010000038.1 Salmonella enterica strain PNUSAS364053 SAMN36521162-rid18819243.denovo.41, whole genome shotgun sequence	1150..1280																																																						avrA	ABNLXI010000010.1	137718..138587	99.425	870	0						
GCA_032441385.1_PDT001821840.1_genomic.fna	Salmonella_enterica	0.5214	257.274 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLXJ010000001.1 Salmonella enterica strain PNUSAS364049 SAMN36521168-rid18819233.denovo.01, whole genome shotgun sequence	52470..52907	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLXJ010000038.1 Salmonella enterica strain PNUSAS364049 SAMN36521168-rid18819233.guided.33, whole genome shotgun sequence	2254..2691	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLXJ010000029.1 Salmonella enterica strain PNUSAS364049 SAMN36521168-rid18819233.denovo.29, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNLXJ010000030.1 Salmonella enterica strain PNUSAS364049 SAMN36521168-rid18819233.denovo.30, whole genome shotgun sequence	3413..3674																																																avrA	ABNLXJ010000005.1	43554..44423	99.54	870	0						
GCA_032441425.1_PDT001821839.1_genomic.fna	Salmonella_enterica	0.5212	489.809 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLXK010000001.1 Salmonella enterica strain PNUSAS363935 SAMN36521084-rid18819223.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLXK010000028.1 Salmonella enterica strain PNUSAS363935 SAMN36521084-rid18819223.guided.23, whole genome shotgun sequence	1358..1795	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLXK010000014.1 Salmonella enterica strain PNUSAS363935 SAMN36521084-rid18819223.denovo.14, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNLXK010000018.1 Salmonella enterica strain PNUSAS363935 SAMN36521084-rid18819223.denovo.20, whole genome shotgun sequence	3388..3649																																																avrA	ABNLXK010000002.1	538882..539751	99.54	870	0						
GCA_032441445.1_PDT001821838.1_genomic.fna	Salmonella_enterica	0.5138	204.984 KB	9	aroC_88,dnaN_26,hemD_30,hisD_55,purE_21,sucA_68,thrA_80	432	61:k:1,5,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_55	purE	100	100	purE_21	sucA	100	100	sucA_68	thrA	100	100	thrA_80	61	k	1,5,7	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:k:1,5,(7)		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLXM010000010.1 Salmonella enterica strain PNUSAS364048 SAMN36521163-rid18819213.denovo.10, whole genome shotgun sequence	82328..82765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNLXM010000060.1 Salmonella enterica strain PNUSAS364048 SAMN36521163-rid18819213.guided.48, whole genome shotgun sequence	3953..4390	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	99.73	377 / 377	ABNLXM010000030.1 Salmonella enterica strain PNUSAS364048 SAMN36521163-rid18819213.denovo.30, whole genome shotgun sequence	13301..13677																																																						avrA	ABNLXM010000017.1	57868..58737	96.552	870	0						
GCA_032441485.1_PDT001821837.1_genomic.fna	Salmonella_enterica	0.5218	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLXN010000001.1 Salmonella enterica strain PNUSAS363927 SAMN36521104-rid18819203.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNLXN010000025.1 Salmonella enterica strain PNUSAS363927 SAMN36521104-rid18819203.denovo.25, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNLXN010000025.1 Salmonella enterica strain PNUSAS363927 SAMN36521104-rid18819203.denovo.25, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNLXN010000047.1 Salmonella enterica strain PNUSAS363927 SAMN36521104-rid18819203.guided.32, whole genome shotgun sequence	878..1669	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNLXN010000047.1 Salmonella enterica strain PNUSAS363927 SAMN36521104-rid18819203.guided.32, whole genome shotgun sequence	878..1669	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNLXN010000049.1 Salmonella enterica strain PNUSAS363927 SAMN36521104-rid18819203.guided.38, whole genome shotgun sequence	1956..2393	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNLXN010000025.1 Salmonella enterica strain PNUSAS363927 SAMN36521104-rid18819203.denovo.25, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNLXN010000047.1 Salmonella enterica strain PNUSAS363927 SAMN36521104-rid18819203.guided.32, whole genome shotgun sequence	2174..3013	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNLXN010000025.1 Salmonella enterica strain PNUSAS363927 SAMN36521104-rid18819203.denovo.25, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNLXN010000047.1 Salmonella enterica strain PNUSAS363927 SAMN36521104-rid18819203.guided.32, whole genome shotgun sequence	15530..16729	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNLXN010000028.1 Salmonella enterica strain PNUSAS363927 SAMN36521104-rid18819203.denovo.29, whole genome shotgun sequence	9109..9668																																																						avrA	ABNLXN010000002.1	72141..73010	99.655	870	0						
GCA_032441505.1_PDT001821836.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLXL010000001.1 Salmonella enterica strain PNUSAS363938 SAMN36521101-rid18819193.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLXL010000021.1 Salmonella enterica strain PNUSAS363938 SAMN36521101-rid18819193.guided.15, whole genome shotgun sequence	209..646	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLXL010000011.1 Salmonella enterica strain PNUSAS363938 SAMN36521101-rid18819193.denovo.11, whole genome shotgun sequence	46031..46673	enterobacteriales	IncFII(S)	100	262 / 262	ABNLXL010000011.1 Salmonella enterica strain PNUSAS363938 SAMN36521101-rid18819193.denovo.11, whole genome shotgun sequence	1778..2039																																																avrA	ABNLXL010000002.1	553635..554504	99.54	870	0						
GCA_032441625.1_PDT001821834.1_genomic.fna	Salmonella_enterica	0.5214	489.738 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLXV010000001.1 Salmonella enterica strain PNUSAS363950 SAMN36521080-rid18819173.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLXV010000022.1 Salmonella enterica strain PNUSAS363950 SAMN36521080-rid18819173.guided.15, whole genome shotgun sequence	16818..17255	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLXV010000011.1 Salmonella enterica strain PNUSAS363950 SAMN36521080-rid18819173.denovo.11, whole genome shotgun sequence	48660..49302	enterobacteriales	IncFII(S)	100	262 / 262	ABNLXV010000011.1 Salmonella enterica strain PNUSAS363950 SAMN36521080-rid18819173.denovo.11, whole genome shotgun sequence	4416..4677																																																avrA	ABNLXV010000002.1	553356..554225	99.54	870	0						
GCA_032441645.1_PDT001821833.1_genomic.fna	Salmonella_enterica	0.5209	465.881 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLXW010000001.1 Salmonella enterica strain PNUSAS363947 SAMN36521092-rid18819163.denovo.01, whole genome shotgun sequence	563103..563540	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLXW010000031.1 Salmonella enterica strain PNUSAS363947 SAMN36521092-rid18819163.guided.22, whole genome shotgun sequence	241..678	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLXW010000010.1	140460..141328	99.195	870	0						
GCA_032441685.1_PDT001821832.1_genomic.fna	Salmonella_enterica	0.5212	282.543 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLXX010000001.1 Salmonella enterica strain PNUSAS363936 SAMN36521083-rid18819153.denovo.01, whole genome shotgun sequence	569502..569939	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLXX010000039.1 Salmonella enterica strain PNUSAS363936 SAMN36521083-rid18819153.guided.31, whole genome shotgun sequence	1030..1467	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLXX010000007.1	174559..175428	99.885	870	0						
GCA_032441705.1_PDT001821831.1_genomic.fna	Salmonella_enterica	0.5205	476.999 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLXY010000001.1 Salmonella enterica strain PNUSAS363934 SAMN36521085-rid18819143.denovo.01, whole genome shotgun sequence	561091..561528	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLXY010000071.1 Salmonella enterica strain PNUSAS363934 SAMN36521085-rid18819143.guided.45, whole genome shotgun sequence	363..800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNLXY010000017.1 Salmonella enterica strain PNUSAS363934 SAMN36521085-rid18819143.denovo.18, whole genome shotgun sequence	8531..9173	enterobacteriales	IncFII	95.06	263 / 261	ABNLXY010000021.1 Salmonella enterica strain PNUSAS363934 SAMN36521085-rid18819143.denovo.22, whole genome shotgun sequence	12082..12340																																																avrA	ABNLXY010000011.1	139972..140841	99.425	870	0						
GCA_032441725.1_PDT001821830.1_genomic.fna	Salmonella_enterica	0.5225	523.34 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNLXZ010000001.1 Salmonella enterica strain PNUSAS363948 SAMN36521091-rid18819133.denovo.01, whole genome shotgun sequence	794072..794509	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNLXZ010000027.1 Salmonella enterica strain PNUSAS363948 SAMN36521091-rid18819133.guided.24, whole genome shotgun sequence	338..775	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLXZ010000003.1	131915..132784	98.966	870	0						
GCA_032441745.1_PDT001821829.1_genomic.fna	Salmonella_enterica	0.5213	480.236 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLYA010000001.1 Salmonella enterica strain PNUSAS363951 SAMN36521078-rid18819123.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLYA010000024.1 Salmonella enterica strain PNUSAS363951 SAMN36521078-rid18819123.guided.17, whole genome shotgun sequence	4350..4787	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLYA010000011.1 Salmonella enterica strain PNUSAS363951 SAMN36521078-rid18819123.denovo.12, whole genome shotgun sequence	40488..41130	enterobacteriales	IncFII(S)	100	262 / 262	ABNLYA010000015.1 Salmonella enterica strain PNUSAS363951 SAMN36521078-rid18819123.denovo.18, whole genome shotgun sequence	3407..3668																																																avrA	ABNLYA010000002.1	553636..554505	99.54	870	0						
GCA_032441765.1_PDT001821827.1_genomic.fna	Salmonella_enterica	0.5213	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLYC010000001.1 Salmonella enterica strain PNUSAS363945 SAMN36521094-rid18819103.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLYC010000021.1 Salmonella enterica strain PNUSAS363945 SAMN36521094-rid18819103.guided.17, whole genome shotgun sequence	13197..13634	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLYC010000012.1 Salmonella enterica strain PNUSAS363945 SAMN36521094-rid18819103.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNLYC010000012.1 Salmonella enterica strain PNUSAS363945 SAMN36521094-rid18819103.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABNLYC010000002.1	553636..554505	99.54	870	0						
GCA_032441785.1_PDT001821826.1_genomic.fna	Salmonella_enterica	0.5219	225.556 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLYD010000004.1 Salmonella enterica strain PNUSAS363923 SAMN36521107-rid18819093.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLYD010000055.1 Salmonella enterica strain PNUSAS363923 SAMN36521107-rid18819093.guided.38, whole genome shotgun sequence	3994..4431	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLYD010000018.1 Salmonella enterica strain PNUSAS363923 SAMN36521107-rid18819093.denovo.18, whole genome shotgun sequence	44750..45392	enterobacteriales	IncFII(S)	100	262 / 262	ABNLYD010000018.1 Salmonella enterica strain PNUSAS363923 SAMN36521107-rid18819093.denovo.18, whole genome shotgun sequence	29405..29666																																																avrA	ABNLYD010000005.1	175008..175876	100	869	0						
GCA_032441805.1_PDT001821828.1_genomic.fna	Salmonella_enterica	0.5208	707.807 KB	3	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLYB010000002.1 Salmonella enterica strain PNUSAS363926 SAMN36521105-rid18819113.denovo.02, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLYB010000025.1 Salmonella enterica strain PNUSAS363926 SAMN36521105-rid18819113.guided.17, whole genome shotgun sequence	2893..3330	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032441845.1_PDT001821820.1_genomic.fna	Salmonella_enterica	0.5205	707.807 KB	2	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLYJ010000001.1 Salmonella enterica strain PNUSAS363930 SAMN36521089-rid18819033.denovo.01, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLYJ010000023.1 Salmonella enterica strain PNUSAS363930 SAMN36521089-rid18819033.guided.13, whole genome shotgun sequence	910..1347	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032441875.1_PDT001821822.1_genomic.fna	Salmonella_enterica	0.5206	158.376 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNLYH010000010.1 Salmonella enterica strain PNUSAS363941 SAMN36521098-rid18819053.denovo.10, whole genome shotgun sequence	29911..30345	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNLYH010000059.1 Salmonella enterica strain PNUSAS363941 SAMN36521098-rid18819053.guided.41, whole genome shotgun sequence	414..848	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	ABNLYH010000020.1 Salmonella enterica strain PNUSAS363941 SAMN36521098-rid18819053.denovo.20, whole genome shotgun sequence	23493..24367																																																																	
GCA_032441905.1_PDT001821823.1_genomic.fna	Salmonella_enterica	0.5221	558.057 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNLYG010000001.1 Salmonella enterica strain PNUSAS363942 SAMN36521097-rid18819063.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNLYG010000024.1 Salmonella enterica strain PNUSAS363942 SAMN36521097-rid18819063.guided.20, whole genome shotgun sequence	762..1199	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLYG010000003.1	138363..139232	98.966	870	0						
GCA_032441925.1_PDT001821824.1_genomic.fna	Salmonella_enterica	0.522	761.782 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNLYF010000002.1 Salmonella enterica strain PNUSAS363933 SAMN36521086-rid18819073.denovo.02, whole genome shotgun sequence	174662..175099	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNLYF010000025.1 Salmonella enterica strain PNUSAS363933 SAMN36521086-rid18819073.guided.22, whole genome shotgun sequence	6..443	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNLYF010000005.1	151320..152189	99.77	870	0						
GCA_032442005.1_PDT001821818.1_genomic.fna	Salmonella_enterica	0.5223	490.377 KB	3	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNLYL010000001.1 Salmonella enterica strain PNUSAS363931 SAMN36521088-rid18819013.denovo.01, whole genome shotgun sequence	1058586..1059023	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNLYL010000032.1 Salmonella enterica strain PNUSAS363931 SAMN36521088-rid18819013.guided.20, whole genome shotgun sequence	2960..3397	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032442025.1_PDT001821816.1_genomic.fna	Salmonella_enterica	0.522	757.89 KB	2	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNLYN010000001.1 Salmonella enterica strain PNUSAS363939 SAMN36521100-rid18818993.denovo.01, whole genome shotgun sequence	1376918..1377355	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNLYN010000019.1 Salmonella enterica strain PNUSAS363939 SAMN36521100-rid18818993.guided.12, whole genome shotgun sequence	213..650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLYN010000002.1	545585..546453	99.655	869	0						
GCA_032442045.1_PDT001821817.1_genomic.fna	Salmonella_enterica	0.52	489.746 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	4	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncX4	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLYM010000001.1 Salmonella enterica strain PNUSAS363944 SAMN36521095-rid18819003.denovo.01, whole genome shotgun sequence	815099..815536	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLYM010000028.1 Salmonella enterica strain PNUSAS363944 SAMN36521095-rid18819003.guided.26, whole genome shotgun sequence	163..600	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLYM010000012.1 Salmonella enterica strain PNUSAS363944 SAMN36521095-rid18819003.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNLYM010000017.1 Salmonella enterica strain PNUSAS363944 SAMN36521095-rid18819003.denovo.17, whole genome shotgun sequence	3395..3656		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNLYM010000010.1 Salmonella enterica strain PNUSAS363944 SAMN36521095-rid18819003.denovo.10, whole genome shotgun sequence	36862..37003		enterobacteriales	IncX4	100	374 / 374	ABNLYM010000015.1 Salmonella enterica strain PNUSAS363944 SAMN36521095-rid18819003.denovo.15, whole genome shotgun sequence	13724..14097																																		avrA	ABNLYM010000002.1	553193..554062	99.54	870	0						
GCA_032442065.1_PDT001821815.1_genomic.fna	Salmonella_enterica	0.5216	411.419 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLYO010000001.1 Salmonella enterica strain PNUSAS363922 SAMN36521108-rid18818983.denovo.01, whole genome shotgun sequence	360662..361099	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.21	391/438	ABNLYO010000043.1 Salmonella enterica strain PNUSAS363922 SAMN36521108-rid18818983.guided.36, whole genome shotgun sequence	1..391	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLYO010000003.1	148143..149012	99.77	870	0						
GCA_032442475.1_PDT001821759.1_genomic.fna	Salmonella_enterica	0.5219	257.553 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLZH010000001.1 Salmonella enterica strain PNUSAS363995 SAMN36514635-rid18818423.denovo.01, whole genome shotgun sequence	482681..483118	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLZH010000046.1 Salmonella enterica strain PNUSAS363995 SAMN36514635-rid18818423.guided.25, whole genome shotgun sequence	32258..32695	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLZH010000018.1 Salmonella enterica strain PNUSAS363995 SAMN36514635-rid18818423.denovo.18, whole genome shotgun sequence	86355..86997	enterobacteriales	IncFII(S)	100	262 / 262	ABNLZH010000018.1 Salmonella enterica strain PNUSAS363995 SAMN36514635-rid18818423.denovo.18, whole genome shotgun sequence	71009..71270																																																avrA	ABNLZH010000005.1	97957..98826	99.885	870	0						
GCA_032442495.1_PDT001821758.1_genomic.fna	Salmonella_enterica	0.5211	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLZI010000001.1 Salmonella enterica strain PNUSAS363982 SAMN36514645-rid18818413.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLZI010000025.1 Salmonella enterica strain PNUSAS363982 SAMN36514645-rid18818413.guided.14, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLZI010000017.1 Salmonella enterica strain PNUSAS363982 SAMN36514645-rid18818413.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNLZI010000018.1 Salmonella enterica strain PNUSAS363982 SAMN36514645-rid18818413.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABNLZI010000002.1	553635..554504	99.54	870	0						
GCA_032442525.1_PDT001821757.1_genomic.fna	Salmonella_enterica	0.5215	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLZJ010000001.1 Salmonella enterica strain PNUSAS363991 SAMN36514658-rid18816883.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLZJ010000025.1 Salmonella enterica strain PNUSAS363991 SAMN36514658-rid18816883.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLZJ010000016.1 Salmonella enterica strain PNUSAS363991 SAMN36514658-rid18816883.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNLZJ010000018.1 Salmonella enterica strain PNUSAS363991 SAMN36514658-rid18816883.denovo.21, whole genome shotgun sequence	3413..3674																																																avrA	ABNLZJ010000002.1	553635..554504	99.54	870	0						
GCA_032442915.1_PDT001821756.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLZK010000001.1 Salmonella enterica strain PNUSAS364004 SAMN36514656-rid18818403.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLZK010000025.1 Salmonella enterica strain PNUSAS364004 SAMN36514656-rid18818403.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLZK010000017.1 Salmonella enterica strain PNUSAS364004 SAMN36514656-rid18818403.denovo.18, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNLZK010000019.1 Salmonella enterica strain PNUSAS364004 SAMN36514656-rid18818403.denovo.22, whole genome shotgun sequence	3402..3663																																																avrA	ABNLZK010000002.1	505545..506414	99.54	870	0						
GCA_032442945.1_PDT001821755.1_genomic.fna	Salmonella_enterica	0.5211	490.001 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLZL010000001.1 Salmonella enterica strain PNUSAS363994 SAMN36514657-rid18816873.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLZL010000025.1 Salmonella enterica strain PNUSAS363994 SAMN36514657-rid18816873.guided.15, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLZL010000018.1 Salmonella enterica strain PNUSAS363994 SAMN36514657-rid18816873.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNLZL010000019.1 Salmonella enterica strain PNUSAS363994 SAMN36514657-rid18816873.denovo.22, whole genome shotgun sequence	3390..3651																																																avrA	ABNLZL010000002.1	585348..586217	99.54	870	0						
GCA_032442975.1_PDT001821752.1_genomic.fna	Salmonella_enterica	0.521	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLZO010000001.1 Salmonella enterica strain PNUSAS363984 SAMN36514651-rid18816863.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLZO010000023.1 Salmonella enterica strain PNUSAS363984 SAMN36514651-rid18816863.guided.15, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLZO010000013.1 Salmonella enterica strain PNUSAS363984 SAMN36514651-rid18816863.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNLZO010000016.1 Salmonella enterica strain PNUSAS363984 SAMN36514651-rid18816863.denovo.19, whole genome shotgun sequence	3402..3663																																																avrA	ABNLZO010000002.1	553635..554504	99.54	870	0						
GCA_032442985.1_PDT001821753.1_genomic.fna	Salmonella_enterica	0.522	410.978 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNLZM010000001.1 Salmonella enterica strain PNUSAS364000 SAMN36514633-rid18818383.denovo.01, whole genome shotgun sequence	683904..684341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNLZM010000024.1 Salmonella enterica strain PNUSAS364000 SAMN36514633-rid18818383.guided.15, whole genome shotgun sequence	32338..32775	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLZM010000002.1	563615..564484	99.77	870	0						
GCA_032443015.1_PDT001821754.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLZN010000001.1 Salmonella enterica strain PNUSAS363983 SAMN36514646-rid18818393.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLZN010000024.1 Salmonella enterica strain PNUSAS363983 SAMN36514646-rid18818393.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLZN010000017.1 Salmonella enterica strain PNUSAS363983 SAMN36514646-rid18818393.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNLZN010000019.1 Salmonella enterica strain PNUSAS363983 SAMN36514646-rid18818393.denovo.22, whole genome shotgun sequence	3393..3654																																																avrA	ABNLZN010000002.1	553642..554511	99.54	870	0						
GCA_032443045.1_PDT001821751.1_genomic.fna	Salmonella_enterica	0.5209	407.022 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLZQ010000001.1 Salmonella enterica strain PNUSAS363988 SAMN36514650-rid18818373.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLZQ010000023.1 Salmonella enterica strain PNUSAS363988 SAMN36514650-rid18818373.guided.14, whole genome shotgun sequence	12388..12825	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLZQ010000016.1 Salmonella enterica strain PNUSAS363988 SAMN36514650-rid18818373.denovo.18, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNLZQ010000017.1 Salmonella enterica strain PNUSAS363988 SAMN36514650-rid18818373.denovo.19, whole genome shotgun sequence	3402..3663																																																avrA	ABNLZQ010000002.1	553635..554504	99.54	870	0						
GCA_032443075.1_PDT001821750.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLZP010000001.1 Salmonella enterica strain PNUSAS363990 SAMN36514659-rid18816853.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLZP010000022.1 Salmonella enterica strain PNUSAS363990 SAMN36514659-rid18816853.guided.14, whole genome shotgun sequence	32327..32764	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLZP010000017.1 Salmonella enterica strain PNUSAS363990 SAMN36514659-rid18816853.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNLZP010000014.1 Salmonella enterica strain PNUSAS363990 SAMN36514659-rid18816853.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNLZP010000002.1	553635..554504	99.54	870	0						
GCA_032443105.1_PDT001821749.1_genomic.fna	Salmonella_enterica	0.5221	313.025 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNLZR010000012.1 Salmonella enterica strain PNUSAS363996 SAMN36514654-rid18816843.denovo.12, whole genome shotgun sequence	70822..71259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNLZR010000034.1 Salmonella enterica strain PNUSAS363996 SAMN36514654-rid18816843.guided.27, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLZR010000006.1	94228..95097	98.966	870	0						
GCA_032443155.1_PDT001821747.1_genomic.fna	Salmonella_enterica	0.5214	408.681 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNLZT010000001.1 Salmonella enterica strain PNUSAS363992 SAMN36514643-rid18816833.denovo.01, whole genome shotgun sequence	365661..366098	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNLZT010000025.1 Salmonella enterica strain PNUSAS363992 SAMN36514643-rid18816833.guided.19, whole genome shotgun sequence	3829..4266	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNLZT010000016.1 Salmonella enterica strain PNUSAS363992 SAMN36514643-rid18816833.denovo.16, whole genome shotgun sequence	40536..41178	enterobacteriales	IncFII(S)	100	262 / 262	ABNLZT010000020.1 Salmonella enterica strain PNUSAS363992 SAMN36514643-rid18816833.denovo.22, whole genome shotgun sequence	3413..3674																																																avrA	ABNLZT010000002.1	553635..554504	99.54	870	0						
GCA_032443205.1_PDT001821746.1_genomic.fna	Salmonella_enterica	0.521	361.677 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNLZU010000001.1 Salmonella enterica strain PNUSAS364002 SAMN36514636-rid18818353.denovo.01, whole genome shotgun sequence	790286..790723	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNLZU010000033.1 Salmonella enterica strain PNUSAS364002 SAMN36514636-rid18818353.guided.20, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNLZU010000021.1 Salmonella enterica strain PNUSAS364002 SAMN36514636-rid18818353.denovo.24, whole genome shotgun sequence	1506..1636																																																						avrA	ABNLZU010000008.1	39350..40219	98.966	870	0						
GCA_032443225.1_PDT001821744.1_genomic.fna	Salmonella_enterica	0.5207	337.638 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNLZW010000001.1 Salmonella enterica strain PNUSAS363986 SAMN36514649-rid18818343.denovo.01, whole genome shotgun sequence	800277..800714	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNLZW010000034.1 Salmonella enterica strain PNUSAS363986 SAMN36514649-rid18818343.guided.21, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLZW010000002.1	551339..552208	99.195	870	0						
GCA_032443255.1_PDT001821743.1_genomic.fna	Salmonella_enterica	0.5213	329.418 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNLZZ010000003.1 Salmonella enterica strain PNUSAS363998 SAMN36514652-rid18818333.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNLZZ010000046.1 Salmonella enterica strain PNUSAS363998 SAMN36514652-rid18818333.guided.26, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNLZZ010000021.1 Salmonella enterica strain PNUSAS363998 SAMN36514652-rid18818333.denovo.21, whole genome shotgun sequence	44728..45370	enterobacteriales	IncFII(S)	100	262 / 262	ABNLZZ010000021.1 Salmonella enterica strain PNUSAS363998 SAMN36514652-rid18818333.denovo.21, whole genome shotgun sequence	29382..29643																																																avrA	ABNLZZ010000006.1	155216..156084	100	869	0						
GCA_032443285.1_PDT001821742.1_genomic.fna	Salmonella_enterica	0.5208	229.669 KB	6	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNLZY010000002.1 Salmonella enterica strain PNUSAS364001 SAMN36514653-rid18818323.denovo.02, whole genome shotgun sequence	488953..489390	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNLZY010000048.1 Salmonella enterica strain PNUSAS364001 SAMN36514653-rid18818323.guided.31, whole genome shotgun sequence	12384..12821	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNLZY010000001.1	554421..555290	99.31	870	0						
GCA_032443315.1_PDT001821739.1_genomic.fna	Salmonella_enterica	0.5212	680.109 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNMAB010000001.1 Salmonella enterica strain PNUSAS363999 SAMN36514634-rid18816803.denovo.01, whole genome shotgun sequence	551474..551911	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNMAB010000020.1 Salmonella enterica strain PNUSAS363999 SAMN36514634-rid18816803.guided.14, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMAB010000002.1	545147..546015	99.425	870	0						
GCA_032443345.1_PDT001821741.1_genomic.fna	Salmonella_enterica	0.5219	325.024 KB	6	aroC_83,dnaN_46,hemD_25,hisD_148,purE_33,sucA_23,thrA_63	450	13:d:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_83	dnaN	100	100	dnaN_46	hemD	100	100	hemD_25	hisD	100	100	hisD_148	purE	100	100	purE_33	sucA	100	100	sucA_23	thrA	100	100	thrA_63	13	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Telelkebir		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNLZX010000003.1 Salmonella enterica strain PNUSAS363993 SAMN36514642-rid18818313.denovo.03, whole genome shotgun sequence	37902..38339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNLZX010000033.1 Salmonella enterica strain PNUSAS363993 SAMN36514642-rid18818313.guided.25, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNLZX010000001.1 Salmonella enterica strain PNUSAS363993 SAMN36514642-rid18818313.denovo.01, whole genome shotgun sequence	390515..390937	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNLZX010000035.1 Salmonella enterica strain PNUSAS363993 SAMN36514642-rid18818313.guided.27, whole genome shotgun sequence	14148..14570	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032443365.1_PDT001821740.1_genomic.fna	Salmonella_enterica	0.5227	470.439 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMAA010000001.1 Salmonella enterica strain PNUSAS363987 SAMN36514647-rid18816813.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMAA010000032.1 Salmonella enterica strain PNUSAS363987 SAMN36514647-rid18816813.guided.22, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMAA010000003.1	94085..94954	99.655	870	0						
GCA_032443395.1_PDT001821738.1_genomic.fna	Salmonella_enterica	0.5209	455.917 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNMAC010000001.1 Salmonella enterica strain PNUSAS364003 SAMN36514655-rid18818303.denovo.01, whole genome shotgun sequence	628421..628858	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNMAC010000029.1 Salmonella enterica strain PNUSAS364003 SAMN36514655-rid18818303.guided.15, whole genome shotgun sequence	10980..11417	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMAC010000002.1	726260..727128	99.425	870	0						
GCA_032443425.1_PDT001821737.1_genomic.fna	Salmonella_enterica	0.5212	722.619 KB	3	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNMAD010000001.1 Salmonella enterica strain PNUSAS363989 SAMN36514644-rid18816793.denovo.01, whole genome shotgun sequence	338630..339067	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNMAD010000028.1 Salmonella enterica strain PNUSAS363989 SAMN36514644-rid18816793.guided.17, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMAD010000003.1	571961..572830	99.31	870	0						
GCA_032443445.1_PDT001821736.1_genomic.fna	Salmonella_enterica	0.5214	399.807 KB	5	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMAE010000004.1 Salmonella enterica strain PNUSAS363985 SAMN36514648-rid18818293.denovo.04, whole genome shotgun sequence	380333..380770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMAE010000030.1 Salmonella enterica strain PNUSAS363985 SAMN36514648-rid18818293.guided.17, whole genome shotgun sequence	42431..42868	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032443505.1_PDT001821733.1_genomic.fna	Salmonella_enterica	0.5207	339.811 KB	3	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMAG010000001.1 Salmonella enterica strain PNUSAS363907 SAMN36514218-rid18818273.denovo.01, whole genome shotgun sequence	1280106..1280543	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMAG010000032.1 Salmonella enterica strain PNUSAS363907 SAMN36514218-rid18818273.guided.11, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032443625.1_PDT001821727.1_genomic.fna	Salmonella_enterica	0.5204	558.057 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pXuzhou21	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNMAN010000001.1 Salmonella enterica strain PNUSAS363911 SAMN36514219-rid18816753.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNMAN010000026.1 Salmonella enterica strain PNUSAS363911 SAMN36514219-rid18816753.guided.11, whole genome shotgun sequence	16407..16844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pXuzhou21	98.33	720 / 720	ABNMAN010000013.1 Salmonella enterica strain PNUSAS363911 SAMN36514219-rid18816753.denovo.16, whole genome shotgun sequence	24198..24917																																																						avrA	ABNMAN010000003.1	94228..95097	98.966	870	0						
GCA_032443805.1_PDT001821718.1_genomic.fna	Salmonella_enterica	0.5208	489.739 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMAX010000001.1 Salmonella enterica strain PNUSAS363909 SAMN36514220-rid18818743.denovo.01, whole genome shotgun sequence	815101..815538	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMAX010000024.1 Salmonella enterica strain PNUSAS363909 SAMN36514220-rid18818743.guided.11, whole genome shotgun sequence	44282..44719	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMAX010000012.1 Salmonella enterica strain PNUSAS363909 SAMN36514220-rid18818743.denovo.14, whole genome shotgun sequence	40507..41149																																																						avrA	ABNMAX010000002.1	553187..554056	99.54	870	0						
GCA_032444095.1_PDT001821697.1_genomic.fna	Salmonella_enterica	0.5209	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMBI010000001.1 Salmonella enterica strain PNUSAS363921 SAMN36514217-rid18816663.denovo.01, whole genome shotgun sequence	769283..769720	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMBI010000025.1 Salmonella enterica strain PNUSAS363921 SAMN36514217-rid18816663.guided.12, whole genome shotgun sequence	22239..22676	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMBI010000011.1 Salmonella enterica strain PNUSAS363921 SAMN36514217-rid18816663.denovo.13, whole genome shotgun sequence	40531..41173	enterobacteriales	IncFII(S)	100	262 / 262	ABNMBI010000015.1 Salmonella enterica strain PNUSAS363921 SAMN36514217-rid18816663.denovo.18, whole genome shotgun sequence	3392..3653																																																avrA	ABNMBI010000002.1	553636..554505	99.54	870	0						
GCA_032444155.1_PDT001917277.1_genomic.fna	Salmonella_enterica	0.5213	208.537 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMBN010000001.1 Salmonella enterica strain PNUSAS388847 SAMN37686057-rid19627363.denovo.01, whole genome shotgun sequence	20243..20680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMBN010000050.1 Salmonella enterica strain PNUSAS388847 SAMN37686057-rid19627363.guided.28, whole genome shotgun sequence	24937..25374	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMBN010000035.1 Salmonella enterica strain PNUSAS388847 SAMN37686057-rid19627363.denovo.38, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNMBN010000041.1 Salmonella enterica strain PNUSAS388847 SAMN37686057-rid19627363.denovo.44, whole genome shotgun sequence	3424..3685																																																avrA	ABNMBN010000006.1	175197..176066	99.54	870	0						
GCA_032444295.1_PDT001917183.1_genomic.fna	Salmonella_enterica	0.519	240.158 KB	7	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMBT010000014.1 Salmonella enterica strain 23NC09CH01-S SAMN37684960-rid19626443.denovo.14, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMBT010000027.1 Salmonella enterica strain 23NC09CH01-S SAMN37684960-rid19626443.denovo.27, whole genome shotgun sequence	33995..34831	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNMBT010000027.1 Salmonella enterica strain 23NC09CH01-S SAMN37684960-rid19626443.denovo.27, whole genome shotgun sequence	34831..35634	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNMBT010000068.1 Salmonella enterica strain 23NC09CH01-S SAMN37684960-rid19626443.guided.46, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNMBT010000068.1 Salmonella enterica strain 23NC09CH01-S SAMN37684960-rid19626443.guided.46, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNMBT010000069.1 Salmonella enterica strain 23NC09CH01-S SAMN37684960-rid19626443.guided.47, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMBT010000069.1 Salmonella enterica strain 23NC09CH01-S SAMN37684960-rid19626443.guided.47, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNMBT010000070.1 Salmonella enterica strain 23NC09CH01-S SAMN37684960-rid19626443.guided.49, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNMBT010000043.1 Salmonella enterica strain 23NC09CH01-S SAMN37684960-rid19626443.denovo.43, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNMBT010000067.1 Salmonella enterica strain 23NC09CH01-S SAMN37684960-rid19626443.guided.44, whole genome shotgun sequence	4199..5404	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNMBT010000033.1 Salmonella enterica strain 23NC09CH01-S SAMN37684960-rid19626443.denovo.33, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNMBT010000027.1 Salmonella enterica strain 23NC09CH01-S SAMN37684960-rid19626443.denovo.27, whole genome shotgun sequence	33111..33372		enterobacteriales	IncFII	96.95	262 / 261	ABNMBT010000068.1 Salmonella enterica strain 23NC09CH01-S SAMN37684960-rid19626443.guided.46, whole genome shotgun sequence	4572..4833		enterobacteriales	IncFII	96.95	262 / 261	ABNMBT010000069.1 Salmonella enterica strain 23NC09CH01-S SAMN37684960-rid19626443.guided.47, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNMBT010000034.1 Salmonella enterica strain 23NC09CH01-S SAMN37684960-rid19626443.denovo.34, whole genome shotgun sequence	12162..12303		enterobacteriales	IncX1	100	373 / 373	ABNMBT010000041.1 Salmonella enterica strain 23NC09CH01-S SAMN37684960-rid19626443.denovo.41, whole genome shotgun sequence	2153..2525																				avrA	ABNMBT010000015.1	102635..103504	99.655	870	0						
GCA_032444315.1_PDT001917108.1_genomic.fna	Salmonella_enterica	0.5217	410.978 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMBU010000001.1 Salmonella enterica strain PNUSAS388781 SAMN37683983-rid19625913.denovo.01, whole genome shotgun sequence	835148..835585	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMBU010000025.1 Salmonella enterica strain PNUSAS388781 SAMN37683983-rid19625913.guided.19, whole genome shotgun sequence	5699..6136	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMBU010000003.1	130566..131435	99.77	870	0						
GCA_032444335.1_PDT001821690.1_genomic.fna	Salmonella_enterica	0.5215	447.767 KB	4	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMBX010000011.1 Salmonella enterica strain PNUSAS363918 SAMN36514214-rid18816643.denovo.11, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMBX010000035.1 Salmonella enterica strain PNUSAS363918 SAMN36514214-rid18816643.guided.26, whole genome shotgun sequence	1058..1495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNMBX010000027.1 Salmonella enterica strain PNUSAS363918 SAMN36514214-rid18816643.denovo.30, whole genome shotgun sequence	547..675	enterobacteriales	Col440I	90.27	113 / 114	ABNMBX010000026.1 Salmonella enterica strain PNUSAS363918 SAMN36514214-rid18816643.denovo.29, whole genome shotgun sequence	3345..3457																																																											
GCA_032444395.1_PDT001821689.1_genomic.fna	Salmonella_enterica	0.521	141.506 KB	12	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNMBY010000036.1 Salmonella enterica strain PNUSAS363919 SAMN36514227-rid18818003.denovo.38, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNMBY010000086.1 Salmonella enterica strain PNUSAS363919 SAMN36514227-rid18818003.guided.37, whole genome shotgun sequence	37698..38135	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABNMBY010000025.1 Salmonella enterica strain PNUSAS363919 SAMN36514227-rid18818003.denovo.25, whole genome shotgun sequence	68147..68408																																																						avrA	ABNMBY010000004.1	93997..94866	98.966	870	0						
GCA_032444455.1_PDT001821687.1_genomic.fna	Salmonella_enterica	0.5213	570.928 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNMCB010000001.1 Salmonella enterica strain PNUSAS363908 SAMN36514222-rid18816633.denovo.01, whole genome shotgun sequence	779723..780160	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNMCB010000022.1 Salmonella enterica strain PNUSAS363908 SAMN36514222-rid18816633.guided.09, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNMCB010000014.1 Salmonella enterica strain PNUSAS363908 SAMN36514222-rid18816633.denovo.17, whole genome shotgun sequence	239..369	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNMCB010000016.1 Salmonella enterica strain PNUSAS363908 SAMN36514222-rid18816633.denovo.19, whole genome shotgun sequence	186..316		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNMCB010000010.1 Salmonella enterica strain PNUSAS363908 SAMN36514222-rid18816633.denovo.11, whole genome shotgun sequence	69439..69580																																									avrA	ABNMCB010000002.1	561356..562225	99.425	870	0						
GCA_032444535.1_PDT001821682.1_genomic.fna	Salmonella_enterica	0.5209	479.638 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMCE010000001.1 Salmonella enterica strain PNUSAS363913 SAMN36514225-rid18817973.denovo.01, whole genome shotgun sequence	774370..774807	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMCE010000026.1 Salmonella enterica strain PNUSAS363913 SAMN36514225-rid18817973.guided.10, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMCE010000011.1 Salmonella enterica strain PNUSAS363913 SAMN36514225-rid18817973.denovo.13, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABNMCE010000016.1 Salmonella enterica strain PNUSAS363913 SAMN36514225-rid18817973.denovo.19, whole genome shotgun sequence	3375..3636																																																avrA	ABNMCE010000002.1	505608..506477	99.54	870	0						
GCA_032444575.1_PDT001821675.1_genomic.fna	Salmonella_enterica	0.5215	299.258 KB	6	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMCJ010000002.1 Salmonella enterica strain PNUSAS363912 SAMN36514226-rid18816593.denovo.02, whole genome shotgun sequence	133775..134212	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMCJ010000029.1 Salmonella enterica strain PNUSAS363912 SAMN36514226-rid18816593.guided.23, whole genome shotgun sequence	3438..3875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032444595.1_PDT001821674.1_genomic.fna	Salmonella_enterica	0.5208	489.738 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMCK010000001.1 Salmonella enterica strain PNUSAS363915 SAMN36514224-rid18817933.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMCK010000026.1 Salmonella enterica strain PNUSAS363915 SAMN36514224-rid18817933.guided.10, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMCK010000002.1	553182..554051	99.54	870	0						
GCA_032444615.1_PDT001821680.1_genomic.fna	Salmonella_enterica	0.5223	302.253 KB	5	aroC_5,dnaN_14,hemD_21,hisD_9,purE_6,sucA_12,thrA_17	49	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMCI010000001.1 Salmonella enterica strain PNUSAS363916 SAMN36514228-rid18816613.denovo.01, whole genome shotgun sequence	639576..640013	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNMCI010000039.1 Salmonella enterica strain PNUSAS363916 SAMN36514228-rid18816613.guided.11, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMCI010000003.1	140035..140904	99.54	870	0						
GCA_032444675.1_PDT001821672.1_genomic.fna	Salmonella_enterica	0.5212	558.057 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNMCM010000001.1 Salmonella enterica strain PNUSAS363914 SAMN36514223-rid18816583.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNMCM010000024.1 Salmonella enterica strain PNUSAS363914 SAMN36514223-rid18816583.guided.11, whole genome shotgun sequence	16407..16844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMCM010000003.1	138360..139229	98.966	870	0						
GCA_032444695.1_PDT001821671.1_genomic.fna	Salmonella_enterica	0.5235	361.036 KB	4	aroC_140,dnaN_105,hemD_85,hisD_93,purE_14,sucA_10,thrA_3	440	35:f,g:-	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440I,Col440I	aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_85	hisD	100	100	hisD_93	purE	100	100	purE_14	sucA	100	100	sucA_10	thrA	100	100	thrA_3	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMCN010000001.1 Salmonella enterica strain PNUSAS363917 SAMN36514215-rid18817913.denovo.01, whole genome shotgun sequence	766294..766731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.94	437/438	ABNMCN010000038.1 Salmonella enterica strain PNUSAS363917 SAMN36514215-rid18817913.guided.36, whole genome shotgun sequence	308..744	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNMCN010000029.1 Salmonella enterica strain PNUSAS363917 SAMN36514215-rid18817913.denovo.32, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNMCN010000037.1 Salmonella enterica strain PNUSAS363917 SAMN36514215-rid18817913.guided.33, whole genome shotgun sequence	620..1264	Ciprofloxacin	EU432277	tet(A)	100	1200/1200	ABNMCN010000023.1 Salmonella enterica strain PNUSAS363917 SAMN36514215-rid18817913.denovo.24, whole genome shotgun sequence	3910..5109	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNMCN010000036.1 Salmonella enterica strain PNUSAS363917 SAMN36514215-rid18817913.guided.26, whole genome shotgun sequence	1898..3097	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNMCN010000027.1 Salmonella enterica strain PNUSAS363917 SAMN36514215-rid18817913.denovo.30, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNMCN010000029.1 Salmonella enterica strain PNUSAS363917 SAMN36514215-rid18817913.denovo.32, whole genome shotgun sequence	1522..1652		enterobacteriales	Col440I	94.59	111 / 114	ABNMCN010000025.1 Salmonella enterica strain PNUSAS363917 SAMN36514215-rid18817913.denovo.28, whole genome shotgun sequence	3175..3285		enterobacteriales	Col440I	91.23	114 / 114	ABNMCN010000037.1 Salmonella enterica strain PNUSAS363917 SAMN36514215-rid18817913.guided.33, whole genome shotgun sequence	3..116																																													
GCA_032444735.1_PDT001821669.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMCQ010000001.1 Salmonella enterica strain PNUSAS363910 SAMN36514221-rid18817903.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMCQ010000024.1 Salmonella enterica strain PNUSAS363910 SAMN36514221-rid18817903.guided.10, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNMCQ010000019.1 Salmonella enterica strain PNUSAS363910 SAMN36514221-rid18817903.denovo.22, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMCQ010000011.1 Salmonella enterica strain PNUSAS363910 SAMN36514221-rid18817903.denovo.13, whole genome shotgun sequence	40473..41115		enterobacteriales	IncFII(S)	100	262 / 262	ABNMCQ010000015.1 Salmonella enterica strain PNUSAS363910 SAMN36514221-rid18817903.denovo.18, whole genome shotgun sequence	3159..3420																																									avrA	ABNMCQ010000002.1	553636..554505	99.54	870	0						
GCA_032444855.1_PDT001821655.1_genomic.fna	Salmonella_enterica	0.5226	352.274 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNMCV010000003.1 Salmonella enterica strain PNUSAS363920 SAMN36514216-rid18816513.denovo.03, whole genome shotgun sequence	293540..293977	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNMCV010000039.1 Salmonella enterica strain PNUSAS363920 SAMN36514216-rid18816513.guided.26, whole genome shotgun sequence	5707..6144	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNMCV010000027.1 Salmonella enterica strain PNUSAS363920 SAMN36514216-rid18816513.denovo.29, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNMCV010000028.1 Salmonella enterica strain PNUSAS363920 SAMN36514216-rid18816513.denovo.30, whole genome shotgun sequence	2528..2639																																																avrA	ABNMCV010000006.1	174267..175135	99.425	870	0						
GCA_032444875.1_PDT001821639.1_genomic.fna	Salmonella_enterica	0.5202	406.449 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncFII(p96A)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMCW010000001.1 Salmonella enterica strain PNUSAS363807 SAMN36511996-rid18817743.denovo.01, whole genome shotgun sequence	162448..162885	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMCW010000033.1 Salmonella enterica strain PNUSAS363807 SAMN36511996-rid18817743.guided.25, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMCW010000022.1 Salmonella enterica strain PNUSAS363807 SAMN36511996-rid18817743.denovo.22, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNMCW010000023.1 Salmonella enterica strain PNUSAS363807 SAMN36511996-rid18817743.denovo.26, whole genome shotgun sequence	3386..3647		enterobacteriales	IncFII(p96A)	99.25	534 / 534	ABNMCW010000018.1 Salmonella enterica strain PNUSAS363807 SAMN36511996-rid18817743.denovo.18, whole genome shotgun sequence	557..1090																																									avrA	ABNMCW010000002.1	585102..585971	99.54	870	0						
GCA_032444955.1_PDT001917275.1_genomic.fna	Salmonella_enterica	0.5223	95.885 KB	15	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNMDA010000007.1 Salmonella enterica strain PNUSAS388855 SAMN37686054-rid19627343.denovo.07, whole genome shotgun sequence	144834..145271	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNMDA010000091.1 Salmonella enterica strain PNUSAS388855 SAMN37686054-rid19627343.guided.52, whole genome shotgun sequence	13027..13464	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMDA010000008.1	61400..62269	99.425	870	0						
GCA_032444975.1_PDT001917276.1_genomic.fna	Salmonella_enterica	0.523	83.512 KB	18	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMDB010000022.1 Salmonella enterica strain PNUSAS388852 SAMN37686051-rid19627353.denovo.022, whole genome shotgun sequence	12477..12914	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMDB010000121.1 Salmonella enterica strain PNUSAS388852 SAMN37686051-rid19627353.guided.084, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032444995.1_PDT001917273.1_genomic.fna	Salmonella_enterica	0.5228	94.314 KB	19	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNMDD010000049.1 Salmonella enterica strain PNUSAS388850 SAMN37686059-rid19627323.denovo.049, whole genome shotgun sequence	14121..14558	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNMDD010000120.1 Salmonella enterica strain PNUSAS388850 SAMN37686059-rid19627323.guided.075, whole genome shotgun sequence	12387..12824	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNMDD010000087.1 Salmonella enterica strain PNUSAS388850 SAMN37686059-rid19627323.denovo.090, whole genome shotgun sequence	239..369																																																						avrA	ABNMDD010000010.1	114581..115450	99.425	870	0						
GCA_032445015.1_PDT001917271.1_genomic.fna	Salmonella_enterica	0.5209	86.461 KB	15	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMDF010000014.1 Salmonella enterica strain PNUSAS388851 SAMN37686058-rid19627303.denovo.014, whole genome shotgun sequence	12493..12930	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMDF010000108.1 Salmonella enterica strain PNUSAS388851 SAMN37686058-rid19627303.guided.047, whole genome shotgun sequence	33740..34177	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMDF010000009.1	93876..94744	99.195	870	0						
GCA_032445035.1_PDT001917274.1_genomic.fna	Salmonella_enterica	0.5221	80.089 KB	19	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNMDC010000004.1 Salmonella enterica strain PNUSAS388857 SAMN37686056-rid19627333.denovo.004, whole genome shotgun sequence	11351..11788	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.35	364/438	ABNMDC010000115.1 Salmonella enterica strain PNUSAS388857 SAMN37686056-rid19627333.guided.105, whole genome shotgun sequence	1..364	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNMDC010000087.1 Salmonella enterica strain PNUSAS388857 SAMN37686056-rid19627333.denovo.089, whole genome shotgun sequence	239..369																																																						avrA	ABNMDC010000002.1	114621..115490	99.425	870	0						
GCA_032445055.1_PDT001917269.1_genomic.fna	Salmonella_enterica	0.5221	65.442 KB	23	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMDG010000023.1 Salmonella enterica strain PNUSAS388853 SAMN37686052-rid19627283.denovo.023, whole genome shotgun sequence	12530..12967	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMDG010000107.1 Salmonella enterica strain PNUSAS388853 SAMN37686052-rid19627283.denovo.112, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMDG010000107.1 Salmonella enterica strain PNUSAS388853 SAMN37686052-rid19627283.denovo.112, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNMDG010000150.1 Salmonella enterica strain PNUSAS388853 SAMN37686052-rid19627283.guided.090, whole genome shotgun sequence	8005..8442	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMDG010000152.1 Salmonella enterica strain PNUSAS388853 SAMN37686052-rid19627283.guided.110, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMDG010000152.1 Salmonella enterica strain PNUSAS388853 SAMN37686052-rid19627283.guided.110, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNMDG010000119.1 Salmonella enterica strain PNUSAS388853 SAMN37686052-rid19627283.denovo.125, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNMDG010000153.1 Salmonella enterica strain PNUSAS388853 SAMN37686052-rid19627283.guided.122, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNMDG010000107.1 Salmonella enterica strain PNUSAS388853 SAMN37686052-rid19627283.denovo.112, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNMDG010000152.1 Salmonella enterica strain PNUSAS388853 SAMN37686052-rid19627283.guided.110, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNMDG010000096.1 Salmonella enterica strain PNUSAS388853 SAMN37686052-rid19627283.denovo.099, whole genome shotgun sequence	2335..3540	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNMDG010000151.1 Salmonella enterica strain PNUSAS388853 SAMN37686052-rid19627283.guided.100, whole genome shotgun sequence	2260..3465	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNMDG010000010.1	93863..94732	99.885	870	0						
GCA_032445095.1_PDT001917268.1_genomic.fna	Salmonella_enterica	0.5222	81.53 KB	20	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMDH010000055.1 Salmonella enterica strain PNUSAS388848 SAMN37686062-rid19627273.denovo.055, whole genome shotgun sequence	12518..12955	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNMDH010000112.1 Salmonella enterica strain PNUSAS388848 SAMN37686062-rid19627273.guided.083, whole genome shotgun sequence	1784..2221	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMDH010000008.1	81528..82397	99.425	870	0						
GCA_032445135.1_PDT001917266.1_genomic.fna	Salmonella_enterica	0.5232	64.184 KB	22	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMDJ010000022.1 Salmonella enterica strain PNUSAS388846 SAMN37686060-rid19627253.denovo.022, whole genome shotgun sequence	11321..11758	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMDJ010000129.1 Salmonella enterica strain PNUSAS388846 SAMN37686060-rid19627253.guided.084, whole genome shotgun sequence	8005..8442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMDJ010000008.1	122574..123443	99.77	870	0						
GCA_032445565.1_PDT001821637.1_genomic.fna	Salmonella_enterica	0.5224	243.216 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMEE010000002.1 Salmonella enterica strain PNUSAS363812 SAMN36511999-rid18817733.denovo.02, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMEE010000034.1 Salmonella enterica strain PNUSAS363812 SAMN36511999-rid18817733.guided.27, whole genome shotgun sequence	10647..11084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNMEE010000028.1 Salmonella enterica strain PNUSAS363812 SAMN36511999-rid18817733.denovo.32, whole genome shotgun sequence	371..501																																																																	
GCA_032445605.1_PDT001821634.1_genomic.fna	Salmonella_enterica	0.521	194.559 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	pXuzhou21	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMEG010000002.1 Salmonella enterica strain PNUSAS363814 SAMN36511394-rid18817703.denovo.02, whole genome shotgun sequence	156800..157237	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMEG010000044.1 Salmonella enterica strain PNUSAS363814 SAMN36511394-rid18817703.guided.27, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	pXuzhou21	99.86	720 / 720	ABNMEG010000030.1 Salmonella enterica strain PNUSAS363814 SAMN36511394-rid18817703.denovo.31, whole genome shotgun sequence	23691..24410																																																																	
GCA_032445625.1_PDT001821633.1_genomic.fna	Salmonella_enterica	0.5212	365.191 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMEH010000012.1 Salmonella enterica strain PNUSAS363810 SAMN36512001-rid18816413.denovo.12, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMEH010000028.1 Salmonella enterica strain PNUSAS363810 SAMN36512001-rid18816413.guided.24, whole genome shotgun sequence	3007..3444	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNMEH010000018.1 Salmonella enterica strain PNUSAS363810 SAMN36512001-rid18816413.denovo.18, whole genome shotgun sequence	34957..35490																																																						avrA	ABNMEH010000003.1	187682..188548	98.966	870	0						
GCA_032445645.1_PDT001821632.1_genomic.fna	Salmonella_enterica	0.522	404.988 KB	5	aroC_2,dnaN_59,hemD_23,hisD_64,purE_38,sucA_61,thrA_12	142	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_59	hemD	100	100	hemD_23	hisD	100	100	hisD_64	purE	100	100	purE_38	sucA	100	100	sucA_61	thrA	100	100	thrA_12	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMEI010000006.1 Salmonella enterica strain PNUSAS363787 SAMN36511301-rid18816403.denovo.06, whole genome shotgun sequence	145040..145477	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMEI010000029.1 Salmonella enterica strain PNUSAS363787 SAMN36511301-rid18816403.guided.21, whole genome shotgun sequence	320..757	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMEI010000001.1	439822..440691	99.425	870	0						
GCA_032445665.1_PDT001821631.1_genomic.fna	Salmonella_enterica	0.5218	528.563 KB	3	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMEJ010000001.1 Salmonella enterica strain PNUSAS363808 SAMN36511998-rid18818683.denovo.01, whole genome shotgun sequence	658177..658614	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMEJ010000020.1 Salmonella enterica strain PNUSAS363808 SAMN36511998-rid18818683.guided.13, whole genome shotgun sequence	15903..16340	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMEJ010000002.1	150313..151179	99.08	870	0						
GCA_032445745.1_PDT001821626.1_genomic.fna	Salmonella_enterica	0.5211	406.452 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMEO010000001.1 Salmonella enterica strain PNUSAS363815 SAMN36511392-rid18817673.denovo.01, whole genome shotgun sequence	780607..781044	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMEO010000024.1 Salmonella enterica strain PNUSAS363815 SAMN36511392-rid18817673.guided.14, whole genome shotgun sequence	38147..38584	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMEO010000018.1 Salmonella enterica strain PNUSAS363815 SAMN36511392-rid18817673.denovo.20, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABNMEO010000015.1 Salmonella enterica strain PNUSAS363815 SAMN36511392-rid18817673.denovo.16, whole genome shotgun sequence	3704..3965																																																avrA	ABNMEO010000002.1	505461..506330	99.54	870	0						
GCA_032445765.1_PDT001821627.1_genomic.fna	Salmonella_enterica	0.5204	407.2 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMEN010000001.1 Salmonella enterica strain PNUSAS363809 SAMN36512000-rid18817683.denovo.01, whole genome shotgun sequence	774424..774861	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMEN010000027.1 Salmonella enterica strain PNUSAS363809 SAMN36512000-rid18817683.guided.14, whole genome shotgun sequence	12429..12866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMEN010000018.1 Salmonella enterica strain PNUSAS363809 SAMN36512000-rid18817683.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNMEN010000020.1 Salmonella enterica strain PNUSAS363809 SAMN36512000-rid18817683.denovo.23, whole genome shotgun sequence	3421..3682		enterobacteriales	IncX1	98.93	374 / 374	ABNMEN010000014.1 Salmonella enterica strain PNUSAS363809 SAMN36512000-rid18817683.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNMEN010000002.1	553554..554423	99.54	870	0						
GCA_032445805.1_PDT001821621.1_genomic.fna	Salmonella_enterica	0.5218	279.051 KB	6	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMEQ010000012.1 Salmonella enterica strain PNUSAS363811 SAMN36511997-rid18818673.denovo.12, whole genome shotgun sequence	105022..105459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMEQ010000035.1 Salmonella enterica strain PNUSAS363811 SAMN36511997-rid18818673.guided.28, whole genome shotgun sequence	4300..4737	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032445865.1_PDT001821618.1_genomic.fna	Salmonella_enterica	0.5208	384.006 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMET010000001.1 Salmonella enterica strain PNUSAS363779 SAMN36511284-rid18816363.denovo.01, whole genome shotgun sequence	384595..385032	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMET010000052.1 Salmonella enterica strain PNUSAS363779 SAMN36511284-rid18816363.guided.38, whole genome shotgun sequence	884..1321	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMET010000002.1	504322..505192	99.196	871	0						
GCA_032445895.1_PDT001821617.1_genomic.fna	Salmonella_enterica	0.5201	292.727 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMEU010000001.1 Salmonella enterica strain PNUSAS363751 SAMN36511237-rid18817633.denovo.01, whole genome shotgun sequence	167933..168370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMEU010000040.1 Salmonella enterica strain PNUSAS363751 SAMN36511237-rid18817633.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	100	316 / 316	ABNMEU010000019.1 Salmonella enterica strain PNUSAS363751 SAMN36511237-rid18817633.denovo.19, whole genome shotgun sequence	26495..26810																																																						avrA	ABNMEU010000002.1	144854..145723	99.31	870	0						
GCA_032445905.1_PDT001917272.1_genomic.fna	Salmonella_enterica	0.5234	61.873 KB	24	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMEV010000030.1 Salmonella enterica strain PNUSAS388849 SAMN37686061-rid19627313.denovo.030, whole genome shotgun sequence	15518..15955	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMEV010000134.1 Salmonella enterica strain PNUSAS388849 SAMN37686061-rid19627313.guided.086, whole genome shotgun sequence	15250..15687	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMEV010000011.1	83899..84768	99.77	870	0						
GCA_032446085.1_PDT001821616.1_genomic.fna	Salmonella_enterica	0.5215	312.882 KB	6	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMFB010000002.1 Salmonella enterica strain PNUSAS363754 SAMN36511238-rid18817623.denovo.02, whole genome shotgun sequence	133775..134212	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMFB010000034.1 Salmonella enterica strain PNUSAS363754 SAMN36511238-rid18817623.guided.25, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNMFB010000027.1 Salmonella enterica strain PNUSAS363754 SAMN36511238-rid18817623.denovo.30, whole genome shotgun sequence	1604..1734																																																																	
GCA_032446495.1_PDT001821611.1_genomic.fna	Salmonella_enterica	0.5231	316.9 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMFG010000005.1 Salmonella enterica strain PNUSAS363768 SAMN36511275-rid18818663.denovo.05, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMFG010000043.1 Salmonella enterica strain PNUSAS363768 SAMN36511275-rid18818663.guided.33, whole genome shotgun sequence	406..843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032446525.1_PDT001821615.1_genomic.fna	Salmonella_enterica	0.5209	282.835 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMFC010000001.1 Salmonella enterica strain PNUSAS363753 SAMN36511236-rid18817613.denovo.01, whole genome shotgun sequence	458968..459405	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNMFC010000033.1 Salmonella enterica strain PNUSAS363753 SAMN36511236-rid18817613.guided.24, whole genome shotgun sequence	21620..22057	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMFC010000002.1	515400..516269	99.885	870	0						
GCA_032446545.1_PDT001821614.1_genomic.fna	Salmonella_enterica	0.5209	411.486 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMFD010000001.1 Salmonella enterica strain PNUSAS363780 SAMN36511287-rid18817603.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMFD010000022.1 Salmonella enterica strain PNUSAS363780 SAMN36511287-rid18817603.guided.14, whole genome shotgun sequence	12407..12844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMFD010000013.1 Salmonella enterica strain PNUSAS363780 SAMN36511287-rid18817603.denovo.13, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNMFD010000016.1 Salmonella enterica strain PNUSAS363780 SAMN36511287-rid18817603.denovo.18, whole genome shotgun sequence	3395..3656																																																avrA	ABNMFD010000002.1	553636..554505	99.54	870	0						
GCA_032446625.1_PDT001821609.1_genomic.fna	Salmonella_enterica	0.5228	251.203 KB	6	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMFI010000001.1 Salmonella enterica strain PNUSAS363776 SAMN36511279-rid18817593.denovo.01, whole genome shotgun sequence	169977..170414	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMFI010000038.1 Salmonella enterica strain PNUSAS363776 SAMN36511279-rid18817593.guided.26, whole genome shotgun sequence	194..631	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032446645.1_PDT001821608.1_genomic.fna	Salmonella_enterica	0.5213	157.152 KB	10	aroC_48,dnaN_108,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	356	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_108	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMFJ010000008.1 Salmonella enterica strain PNUSAS363771 SAMN36511288-rid18816323.denovo.08, whole genome shotgun sequence	37916..38353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMFJ010000058.1 Salmonella enterica strain PNUSAS363771 SAMN36511288-rid18816323.guided.52, whole genome shotgun sequence	17..454	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032446665.1_PDT001821610.1_genomic.fna	Salmonella_enterica	0.5226	393.069 KB	4	aroC_42,dnaN_11,hemD_48,hisD_149,purE_12,sucA_13,thrA_4	1575	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMFH010000001.1 Salmonella enterica strain PNUSAS363813 SAMN36511393-rid18816333.denovo.01, whole genome shotgun sequence	483865..484302	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMFH010000035.1 Salmonella enterica strain PNUSAS363813 SAMN36511393-rid18816333.guided.21, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032446695.1_PDT001821607.1_genomic.fna	Salmonella_enterica	0.5209	489.999 KB	4	aroC_454,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	1925	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	1	gyrA_p.D87G	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_454	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMFK010000001.1 Salmonella enterica strain PNUSAS363783 SAMN36511276-rid18817583.denovo.01, whole genome shotgun sequence	269946..270383	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMFK010000032.1 Salmonella enterica strain PNUSAS363783 SAMN36511276-rid18817583.guided.24, whole genome shotgun sequence	4035..4472	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	ABNMFK010000024.1 Salmonella enterica strain PNUSAS363783 SAMN36511276-rid18817583.denovo.27, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNMFK010000034.1 Salmonella enterica strain PNUSAS363783 SAMN36511276-rid18817583.guided.28, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMFK010000021.1 Salmonella enterica strain PNUSAS363783 SAMN36511276-rid18817583.denovo.22, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNMFK010000022.1 Salmonella enterica strain PNUSAS363783 SAMN36511276-rid18817583.denovo.23, whole genome shotgun sequence	3429..3690		enterobacteriales	IncX1	95.76	377 / 377	ABNMFK010000017.1 Salmonella enterica strain PNUSAS363783 SAMN36511276-rid18817583.denovo.17, whole genome shotgun sequence	4749..5125																																									avrA	ABNMFK010000002.1	553056..553925	99.54	870	0						
GCA_032446705.1_PDT001821606.1_genomic.fna	Salmonella_enterica	0.5225	184.248 KB	9	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	-:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	-	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMFL010000019.1 Salmonella enterica strain PNUSAS363773 SAMN36511282-rid18817573.denovo.19, whole genome shotgun sequence	15778..16215	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNMFL010000075.1 Salmonella enterica strain PNUSAS363773 SAMN36511282-rid18817573.guided.36, whole genome shotgun sequence	12569..13006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.6	643 / 643	ABNMFL010000040.1 Salmonella enterica strain PNUSAS363773 SAMN36511282-rid18817573.denovo.41, whole genome shotgun sequence	11451..12093																																																						avrA	ABNMFL010000009.1	173399..174268	99.425	870	0						
GCA_032446755.1_PDT001821603.1_genomic.fna	Salmonella_enterica	0.5214	543.332 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNMFO010000001.1 Salmonella enterica strain PNUSAS363748 SAMN36511225-rid18816313.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNMFO010000030.1 Salmonella enterica strain PNUSAS363748 SAMN36511225-rid18816313.guided.20, whole genome shotgun sequence	16407..16844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMFO010000004.1	39348..40217	98.966	870	0						
GCA_032446765.1_PDT001821604.1_genomic.fna	Salmonella_enterica	0.5215	275.215 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMFN010000001.1 Salmonella enterica strain PNUSAS363781 SAMN36511286-rid18817553.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNMFN010000044.1 Salmonella enterica strain PNUSAS363781 SAMN36511286-rid18817553.guided.32, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABNMFN010000036.1 Salmonella enterica strain PNUSAS363781 SAMN36511286-rid18817553.denovo.38, whole genome shotgun sequence	3981..4111																																																						avrA	ABNMFN010000004.1	175001..175869	99.77	870	0						
GCA_032446795.1_PDT001821605.1_genomic.fna	Salmonella_enterica	0.52	272.811 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	IncX1,IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMFM010000003.1 Salmonella enterica strain PNUSAS363769 SAMN36511290-rid18817563.denovo.03, whole genome shotgun sequence	77670..78107	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNMFM010000038.1 Salmonella enterica strain PNUSAS363769 SAMN36511290-rid18817563.denovo.39, whole genome shotgun sequence	555..1370	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNMFM010000040.1 Salmonella enterica strain PNUSAS363769 SAMN36511290-rid18817563.denovo.41, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMFM010000040.1 Salmonella enterica strain PNUSAS363769 SAMN36511290-rid18817563.denovo.41, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNMFM010000054.1 Salmonella enterica strain PNUSAS363769 SAMN36511290-rid18817563.guided.42, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMFM010000054.1 Salmonella enterica strain PNUSAS363769 SAMN36511290-rid18817563.guided.42, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNMFM010000056.1 Salmonella enterica strain PNUSAS363769 SAMN36511290-rid18817563.guided.46, whole genome shotgun sequence	147..962	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EU722351	aac(6')-Iaa	100	438/438	ABNMFM010000057.1 Salmonella enterica strain PNUSAS363769 SAMN36511290-rid18817563.guided.48, whole genome shotgun sequence	1671..2108	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNMFM010000045.1 Salmonella enterica strain PNUSAS363769 SAMN36511290-rid18817563.denovo.51, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNMFM010000058.1 Salmonella enterica strain PNUSAS363769 SAMN36511290-rid18817563.guided.50, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNMFM010000040.1 Salmonella enterica strain PNUSAS363769 SAMN36511290-rid18817563.denovo.41, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNMFM010000054.1 Salmonella enterica strain PNUSAS363769 SAMN36511290-rid18817563.guided.42, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNMFM010000034.1 Salmonella enterica strain PNUSAS363769 SAMN36511290-rid18817563.denovo.34, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNMFM010000059.1 Salmonella enterica strain PNUSAS363769 SAMN36511290-rid18817563.guided.52, whole genome shotgun sequence	96..1301	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncX1	98.66	374 / 374	ABNMFM010000028.1 Salmonella enterica strain PNUSAS363769 SAMN36511290-rid18817563.denovo.28, whole genome shotgun sequence	6956..7329	enterobacteriales	IncY	99.74	765 / 765	ABNMFM010000018.1 Salmonella enterica strain PNUSAS363769 SAMN36511290-rid18817563.denovo.18, whole genome shotgun sequence	975..1739																																																avrA	ABNMFM010000001.1	434662..435531	99.885	870	0						
GCA_032446835.1_PDT001821600.1_genomic.fna	Salmonella_enterica	0.5211	197.203 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMFR010000001.1 Salmonella enterica strain PNUSAS363767 SAMN36511274-rid18816303.denovo.01, whole genome shotgun sequence	228900..229337	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMFR010000047.1 Salmonella enterica strain PNUSAS363767 SAMN36511274-rid18816303.guided.41, whole genome shotgun sequence	785..1222	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNMFR010000030.1 Salmonella enterica strain PNUSAS363767 SAMN36511274-rid18816303.denovo.30, whole genome shotgun sequence	9109..9668																																																						avrA	ABNMFR010000002.1	149923..150792	99.655	870	0						
GCA_032446845.1_PDT001821602.1_genomic.fna	Salmonella_enterica	0.5217	225.556 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMFP010000005.1 Salmonella enterica strain PNUSAS363747 SAMN36511224-rid18817543.denovo.05, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNMFP010000058.1 Salmonella enterica strain PNUSAS363747 SAMN36511224-rid18817543.guided.39, whole genome shotgun sequence	19633..20070	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNMFP010000016.1 Salmonella enterica strain PNUSAS363747 SAMN36511224-rid18817543.denovo.16, whole genome shotgun sequence	73572..74771	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNMFP010000059.1 Salmonella enterica strain PNUSAS363747 SAMN36511224-rid18817543.guided.46, whole genome shotgun sequence	972..2171	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	100	643 / 643	ABNMFP010000025.1 Salmonella enterica strain PNUSAS363747 SAMN36511224-rid18817543.denovo.25, whole genome shotgun sequence	44772..45414	enterobacteriales	IncFII(S)	100	262 / 262	ABNMFP010000025.1 Salmonella enterica strain PNUSAS363747 SAMN36511224-rid18817543.denovo.25, whole genome shotgun sequence	29426..29687		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNMFP010000016.1 Salmonella enterica strain PNUSAS363747 SAMN36511224-rid18817543.denovo.16, whole genome shotgun sequence	83562..83703																																									avrA	ABNMFP010000001.1	446621..447489	100	869	0						
GCA_032446895.1_PDT001821598.1_genomic.fna	Salmonella_enterica	0.5209	210.349 KB	7	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMFS010000001.1 Salmonella enterica strain PNUSAS363749 SAMN36511226-rid18816293.denovo.01, whole genome shotgun sequence	503326..503763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMFS010000041.1 Salmonella enterica strain PNUSAS363749 SAMN36511226-rid18816293.guided.31, whole genome shotgun sequence	3341..3778	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNMFS010000019.1 Salmonella enterica strain PNUSAS363749 SAMN36511226-rid18816293.denovo.19, whole genome shotgun sequence	68482..68623																																																						avrA	ABNMFS010000002.1	144853..145722	99.31	870	0						
GCA_032446935.1_PDT001821597.1_genomic.fna	Salmonella_enterica	0.5221	223.434 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMFT010000005.1 Salmonella enterica strain PNUSAS363782 SAMN36511283-rid18817523.denovo.05, whole genome shotgun sequence	15761..16198	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNMFT010000053.1 Salmonella enterica strain PNUSAS363782 SAMN36511283-rid18817523.guided.36, whole genome shotgun sequence	110..547	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	ABNMFT010000036.1 Salmonella enterica strain PNUSAS363782 SAMN36511283-rid18817523.denovo.39, whole genome shotgun sequence	792..945	enterobacteriales	ColRNAI	91.07	112 / 130	ABNMFT010000037.1 Salmonella enterica strain PNUSAS363782 SAMN36511283-rid18817523.denovo.41, whole genome shotgun sequence	2006..2117		enterobacteriales	IncFIB(S)	100	643 / 643	ABNMFT010000018.1 Salmonella enterica strain PNUSAS363782 SAMN36511283-rid18817523.denovo.18, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	ABNMFT010000018.1 Salmonella enterica strain PNUSAS363782 SAMN36511283-rid18817523.denovo.18, whole genome shotgun sequence	30407..30668																																		avrA	ABNMFT010000002.1	401450..402318	100	869	0						
GCA_032446955.1_PDT001821595.1_genomic.fna	Salmonella_enterica	0.5213	164.309 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMFV010000007.1 Salmonella enterica strain PNUSAS363774 SAMN36511289-rid18816283.denovo.07, whole genome shotgun sequence	115567..116004	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNMFV010000068.1 Salmonella enterica strain PNUSAS363774 SAMN36511289-rid18816283.guided.42, whole genome shotgun sequence	1105..1542	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMFV010000008.1	174641..175509	100	869	0						
GCA_032446965.1_PDT001821596.1_genomic.fna	Salmonella_enterica	0.5228	385.511 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMFU010000002.1 Salmonella enterica strain PNUSAS363778 SAMN36511285-rid18817513.denovo.02, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMFU010000039.1 Salmonella enterica strain PNUSAS363778 SAMN36511285-rid18817513.guided.22, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032446995.1_PDT001821593.1_genomic.fna	Salmonella_enterica	0.5217	297.106 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMFX010000002.1 Salmonella enterica strain PNUSAS363755 SAMN36511222-rid18816273.denovo.02, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMFX010000038.1 Salmonella enterica strain PNUSAS363755 SAMN36511222-rid18816273.guided.24, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032447015.1_PDT001821594.1_genomic.fna	Salmonella_enterica	0.5197	278.344 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	IncX1,IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMFW010000001.1 Salmonella enterica strain PNUSAS363772 SAMN36511281-rid18817503.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNMFW010000033.1 Salmonella enterica strain PNUSAS363772 SAMN36511281-rid18817503.denovo.37, whole genome shotgun sequence	555..1370	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNMFW010000035.1 Salmonella enterica strain PNUSAS363772 SAMN36511281-rid18817503.denovo.40, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMFW010000035.1 Salmonella enterica strain PNUSAS363772 SAMN36511281-rid18817503.denovo.40, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNMFW010000046.1 Salmonella enterica strain PNUSAS363772 SAMN36511281-rid18817503.guided.28, whole genome shotgun sequence	20584..21021	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMFW010000050.1 Salmonella enterica strain PNUSAS363772 SAMN36511281-rid18817503.guided.38, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMFW010000050.1 Salmonella enterica strain PNUSAS363772 SAMN36511281-rid18817503.guided.38, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNMFW010000051.1 Salmonella enterica strain PNUSAS363772 SAMN36511281-rid18817503.guided.41, whole genome shotgun sequence	147..962	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	EU722351	blaTEM-1B	100	861/861	ABNMFW010000037.1 Salmonella enterica strain PNUSAS363772 SAMN36511281-rid18817503.denovo.44, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNMFW010000052.1 Salmonella enterica strain PNUSAS363772 SAMN36511281-rid18817503.guided.43, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNMFW010000035.1 Salmonella enterica strain PNUSAS363772 SAMN36511281-rid18817503.denovo.40, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNMFW010000050.1 Salmonella enterica strain PNUSAS363772 SAMN36511281-rid18817503.guided.38, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNMFW010000029.1 Salmonella enterica strain PNUSAS363772 SAMN36511281-rid18817503.denovo.32, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNMFW010000049.1 Salmonella enterica strain PNUSAS363772 SAMN36511281-rid18817503.guided.33, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncX1	98.66	374 / 374	ABNMFW010000026.1 Salmonella enterica strain PNUSAS363772 SAMN36511281-rid18817503.denovo.26, whole genome shotgun sequence	6956..7329	enterobacteriales	IncY	99.74	765 / 765	ABNMFW010000015.1 Salmonella enterica strain PNUSAS363772 SAMN36511281-rid18817503.denovo.15, whole genome shotgun sequence	38912..39676																																																avrA	ABNMFW010000002.1	434804..435673	99.885	870	0						
GCA_032447035.1_PDT001821592.1_genomic.fna	Salmonella_enterica	0.5222	762.924 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNMFY010000001.1 Salmonella enterica strain PNUSAS363777 SAMN36511278-rid18817493.denovo.01, whole genome shotgun sequence	990134..990571	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNMFY010000018.1 Salmonella enterica strain PNUSAS363777 SAMN36511278-rid18817493.guided.13, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMFY010000001.1	553822..554691	99.77	870	0						
GCA_032447055.1_PDT001821590.1_genomic.fna	Salmonella_enterica	0.5144	256.522 KB	5	aroC_65,dnaN_78,hemD_29,hisD_308,purE_48,sucA_50,thrA_497	3617	13:g,z51:-	0		1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_65	dnaN	100	100	dnaN_78	hemD	100	100	hemD_29	hisD	100	100	hisD_308	purE	100	100	purE_48	sucA	100	100	sucA_50	thrA	100	100	thrA_497	13	g,z51	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa [1],13,23:g,z51:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABNMGA010000019.1 Salmonella enterica strain PNUSAS363775 SAMN36511280-rid18817473.denovo.19, whole genome shotgun sequence	3653..3914																																																																	
GCA_032447075.1_PDT001821591.1_genomic.fna	Salmonella_enterica	0.5195	328.272 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMFZ010000001.1 Salmonella enterica strain PNUSAS363756 SAMN36511223-rid18817483.denovo.01, whole genome shotgun sequence	486112..486549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMFZ010000031.1 Salmonella enterica strain PNUSAS363756 SAMN36511223-rid18817483.guided.21, whole genome shotgun sequence	8121..8558	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNMFZ010000004.1 Salmonella enterica strain PNUSAS363756 SAMN36511223-rid18817483.denovo.04, whole genome shotgun sequence	388761..389183	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNMFZ010000032.1 Salmonella enterica strain PNUSAS363756 SAMN36511223-rid18817483.guided.25, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMFZ010000002.1	122286..123155	99.195	870	0						
GCA_032447095.1_PDT001821588.1_genomic.fna	Salmonella_enterica	0.5209	367.11 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMGB010000001.1 Salmonella enterica strain PNUSAS363770 SAMN36511277-rid18816263.denovo.01, whole genome shotgun sequence	388263..388700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMGB010000054.1 Salmonella enterica strain PNUSAS363770 SAMN36511277-rid18816263.guided.28, whole genome shotgun sequence	5243..5680	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMGB010000002.1	504328..505198	99.196	871	0						
GCA_032447115.1_PDT001821589.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMGC010000001.1 Salmonella enterica strain PNUSAS363750 SAMN36511227-rid18817463.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMGC010000025.1 Salmonella enterica strain PNUSAS363750 SAMN36511227-rid18817463.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMGC010000016.1 Salmonella enterica strain PNUSAS363750 SAMN36511227-rid18817463.denovo.19, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNMGC010000018.1 Salmonella enterica strain PNUSAS363750 SAMN36511227-rid18817463.denovo.21, whole genome shotgun sequence	3436..3697																																																avrA	ABNMGC010000002.1	553426..554295	99.54	870	0						
GCA_032447135.1_PDT001821587.1_genomic.fna	Salmonella_enterica	0.5187	307.959 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMGD010000001.1 Salmonella enterica strain PNUSAS363752 SAMN36511221-rid18817453.denovo.01, whole genome shotgun sequence	486107..486544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMGD010000050.1 Salmonella enterica strain PNUSAS363752 SAMN36511221-rid18817453.guided.33, whole genome shotgun sequence	386..823	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNMGD010000011.1 Salmonella enterica strain PNUSAS363752 SAMN36511221-rid18817453.denovo.11, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNMGD010000048.1 Salmonella enterica strain PNUSAS363752 SAMN36511221-rid18817453.guided.30, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMGD010000002.1	152810..153679	99.195	870	0						
GCA_032447355.1_PDT001821565.1_genomic.fna	Salmonella_enterica	0.5219	713.856 KB	3	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMGO010000001.1 Salmonella enterica strain PNUSAS363531 SAMN36499513-rid18816193.denovo.01, whole genome shotgun sequence	396198..396635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMGO010000026.1 Salmonella enterica strain PNUSAS363531 SAMN36499513-rid18816193.guided.13, whole genome shotgun sequence	5926..6363	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032447435.1_PDT001821559.1_genomic.fna	Salmonella_enterica	0.5216	690.311 KB	3	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNMGP010000001.1 Salmonella enterica strain PNUSAS363641 SAMN36504246-rid18817263.denovo.01, whole genome shotgun sequence	618281..618718	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNMGP010000021.1 Salmonella enterica strain PNUSAS363641 SAMN36504246-rid18817263.guided.16, whole genome shotgun sequence	1148..1585	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMGP010000002.1	150971..151840	99.54	870	0						
GCA_032447495.1_PDT001917261.1_genomic.fna	Salmonella_enterica	0.5196	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	4	acrB_p.R717Q,gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNMGR010000010.1 Salmonella enterica strain PNUSAS384212 SAMN37686050-rid19627203.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNMGR010000060.1 Salmonella enterica strain PNUSAS384212 SAMN37686050-rid19627203.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										acrB p.R717Q	CGA -> CAA	R -> Q	Azithromycin	31730615	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																							
GCA_032447535.1_PDT001917191.1_genomic.fna	Salmonella_enterica	0.5216	449.982 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNMGV010000001.1 Salmonella enterica strain PNUSAS388840 SAMN37685179-rid19626523.denovo.01, whole genome shotgun sequence	645053..645490	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNMGV010000024.1 Salmonella enterica strain PNUSAS388840 SAMN37685179-rid19626523.guided.20, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMGV010000002.1	514748..515616	99.655	870	0						
GCA_032447655.1_PDT001821570.1_genomic.fna	Salmonella_enterica	0.5146	193.256 KB	8	aroC_235,dnaN_25,hemD_28,hisD_24,purE_237,sucA_26,thrA_78	869	18:z4,z23:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_235	dnaN	100	100	dnaN_25	hemD	100	100	hemD_28	hisD	100	100	hisD_24	purE	100	100	purE_237	sucA	100	100	sucA_26	thrA	100	100	thrA_78	18	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 18:z4,z23:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032447675.1_PDT001821568.1_genomic.fna	Salmonella_enterica	0.5195	271.152 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	3	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,tet(B),tet(B)	0		2	IncFII(pCRY),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMHB010000001.1 Salmonella enterica strain PNUSAS363539 SAMN36499489-rid18816203.denovo.01, whole genome shotgun sequence	581796..582233	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNMHB010000035.1 Salmonella enterica strain PNUSAS363539 SAMN36499489-rid18816203.denovo.40, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	EU722351	aac(6')-Iaa	100	438/438	ABNMHB010000054.1 Salmonella enterica strain PNUSAS363539 SAMN36499489-rid18816203.guided.12, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNMHB010000058.1 Salmonella enterica strain PNUSAS363539 SAMN36499489-rid18816203.guided.39, whole genome shotgun sequence	1..816	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	EU722351	tet(B)	100	1206/1206	ABNMHB010000029.1 Salmonella enterica strain PNUSAS363539 SAMN36499489-rid18816203.denovo.32, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNMHB010000056.1 Salmonella enterica strain PNUSAS363539 SAMN36499489-rid18816203.guided.31, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFII(pCRY)	95.95	593 / 593	ABNMHB010000027.1 Salmonella enterica strain PNUSAS363539 SAMN36499489-rid18816203.denovo.29, whole genome shotgun sequence	18531..19123	enterobacteriales	IncX1	98.66	374 / 374	ABNMHB010000025.1 Salmonella enterica strain PNUSAS363539 SAMN36499489-rid18816203.denovo.27, whole genome shotgun sequence	6956..7329																																																avrA	ABNMHB010000002.1	540222..541091	99.885	870	0						
GCA_032447715.1_PDT001821562.1_genomic.fna	Salmonella_enterica	0.5165	74.304 KB	23	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	6	IncFIB(AP001918),IncFII,IncHI2,IncHI2A,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMHC010000039.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.denovo.039, whole genome shotgun sequence	14409..14846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMHC010000069.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.denovo.070, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMHC010000069.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.denovo.070, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNMHC010000167.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.guided.083, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMHC010000170.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.guided.140, whole genome shotgun sequence	832..1668	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMHC010000170.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.guided.140, whole genome shotgun sequence	29..832	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNMHC010000171.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.guided.141, whole genome shotgun sequence	832..1668	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNMHC010000171.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.guided.141, whole genome shotgun sequence	30..832	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNMHC010000171.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.guided.141, whole genome shotgun sequence	29..832	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNMHC010000171.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.guided.141, whole genome shotgun sequence	29..832	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNMHC010000171.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.guided.141, whole genome shotgun sequence	29..832	Streptomycin	AF321550	tet(B)	100	1206/1206	ABNMHC010000109.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.denovo.112, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNMHC010000169.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.guided.122, whole genome shotgun sequence	1661..2866	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																													parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNMHC010000117.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.denovo.120, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNMHC010000069.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.denovo.070, whole genome shotgun sequence	5800..6061		enterobacteriales	IncHI2	100	327 / 327	ABNMHC010000104.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.denovo.107, whole genome shotgun sequence	1922..2248		enterobacteriales	IncHI2A	99.52	630 / 630	ABNMHC010000074.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.denovo.075, whole genome shotgun sequence	14241..14870		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNMHC010000040.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.denovo.040, whole genome shotgun sequence	35841..35982		enterobacteriales	IncX1	100	373 / 373	ABNMHC010000106.1 Salmonella enterica strain 23OH05CH01-S SAMN36510135-rid18817293.denovo.109, whole genome shotgun sequence	2153..2525																				avrA	ABNMHC010000009.1	102495..103364	99.655	870	0						
GCA_032447755.1_PDT001821557.1_genomic.fna	Salmonella_enterica	0.5214	255.333 KB	7	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMHH010000009.1 Salmonella enterica strain PNUSAS363639 SAMN36504257-rid18817253.denovo.09, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMHH010000043.1 Salmonella enterica strain PNUSAS363639 SAMN36504257-rid18817253.guided.31, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMHH010000001.1	178838..179706	99.31	870	0						
GCA_032447775.1_PDT001821560.1_genomic.fna	Salmonella_enterica	0.5213	430.002 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMHF010000001.1 Salmonella enterica strain PNUSAS363528 SAMN36499516-rid18817273.denovo.01, whole genome shotgun sequence	560694..561131	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMHF010000029.1 Salmonella enterica strain PNUSAS363528 SAMN36499516-rid18817273.guided.18, whole genome shotgun sequence	1346..1783	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMHF010000010.1	140191..141059	99.195	870	0						
GCA_032447805.1_PDT001821558.1_genomic.fna	Salmonella_enterica	0.5215	466.748 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col156	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMHG010000001.1 Salmonella enterica strain PNUSAS363534 SAMN36499510-rid18816173.denovo.01, whole genome shotgun sequence	1370328..1370765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMHG010000026.1 Salmonella enterica strain PNUSAS363534 SAMN36499510-rid18816173.guided.16, whole genome shotgun sequence	15679..16116	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNMHG010000018.1 Salmonella enterica strain PNUSAS363534 SAMN36499510-rid18816173.denovo.22, whole genome shotgun sequence	1940..2800	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNMHG010000028.1 Salmonella enterica strain PNUSAS363534 SAMN36499510-rid18816173.guided.21, whole genome shotgun sequence	1..861	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.15	113 / 131	ABNMHG010000018.1 Salmonella enterica strain PNUSAS363534 SAMN36499510-rid18816173.denovo.22, whole genome shotgun sequence	175..287	enterobacteriales	Col(pHAD28)	91.15	113 / 131	ABNMHG010000028.1 Salmonella enterica strain PNUSAS363534 SAMN36499510-rid18816173.guided.21, whole genome shotgun sequence	2514..2626		enterobacteriales	Col156	90.79	152 / 154	ABNMHG010000015.1 Salmonella enterica strain PNUSAS363534 SAMN36499510-rid18816173.denovo.18, whole genome shotgun sequence	3270..3421																																									avrA	ABNMHG010000009.1	93870..94740	99.196	871	0						
GCA_032448025.1_PDT001821398.1_genomic.fna	Salmonella_enterica	0.5201	440.889 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNMHP010000004.1 Salmonella enterica strain PNUSAS363538 SAMN36499492-rid18815823.denovo.04, whole genome shotgun sequence	260788..261225	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNMHP010000030.1 Salmonella enterica strain PNUSAS363538 SAMN36499492-rid18815823.guided.21, whole genome shotgun sequence	4130..4567	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABNMHP010000017.1 Salmonella enterica strain PNUSAS363538 SAMN36499492-rid18815823.denovo.17, whole genome shotgun sequence	8484..8745																																																																	
GCA_032448145.1_PDT001821389.1_genomic.fna	Salmonella_enterica	0.5225	619.729 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNMHV010000001.1 Salmonella enterica strain PNUSAS363630 SAMN36504267-rid18815733.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNMHV010000025.1 Salmonella enterica strain PNUSAS363630 SAMN36504267-rid18815733.guided.15, whole genome shotgun sequence	26173..26610	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMHV010000004.1	401356..402225	99.655	870	0						
GCA_032448185.1_PDT001821390.1_genomic.fna	Salmonella_enterica	0.5226	333.532 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMHW010000001.1 Salmonella enterica strain PNUSAS363652 SAMN36504258-rid18815743.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMHW010000032.1 Salmonella enterica strain PNUSAS363652 SAMN36504258-rid18815743.guided.23, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMHW010000003.1	39430..40299	99.655	870	0						
GCA_032448285.1_PDT001821384.1_genomic.fna	Salmonella_enterica	0.5215	401.794 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMHY010000004.1 Salmonella enterica strain PNUSAS363631 SAMN36504270-rid18815683.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNMHY010000038.1 Salmonella enterica strain PNUSAS363631 SAMN36504270-rid18815683.guided.24, whole genome shotgun sequence	5701..6138	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNMHY010000015.1 Salmonella enterica strain PNUSAS363631 SAMN36504270-rid18815683.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNMHY010000015.1 Salmonella enterica strain PNUSAS363631 SAMN36504270-rid18815683.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNMHY010000001.1	446341..447209	100	869	0						
GCA_032448305.1_PDT001821378.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMIE010000001.1 Salmonella enterica strain PNUSAS363621 SAMN36503585-rid18815623.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMIE010000028.1 Salmonella enterica strain PNUSAS363621 SAMN36503585-rid18815623.guided.20, whole genome shotgun sequence	1150..1587	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMIE010000019.1 Salmonella enterica strain PNUSAS363621 SAMN36503585-rid18815623.denovo.21, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNMIE010000020.1 Salmonella enterica strain PNUSAS363621 SAMN36503585-rid18815623.denovo.22, whole genome shotgun sequence	3402..3663																																																avrA	ABNMIE010000002.1	553636..554505	99.54	870	0						
GCA_032448325.1_PDT001821377.1_genomic.fna	Salmonella_enterica	0.5217	372.747 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMIH010000001.1 Salmonella enterica strain PNUSAS363649 SAMN36504245-rid18815613.denovo.01, whole genome shotgun sequence	498146..498583	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMIH010000028.1 Salmonella enterica strain PNUSAS363649 SAMN36504245-rid18815613.guided.21, whole genome shotgun sequence	8643..9080	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMIH010000014.1	39488..40357	99.54	870	0						
GCA_032448405.1_PDT001821374.1_genomic.fna	Salmonella_enterica	0.5211	328.702 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_58,thrA_4	412	4:e,h:1,5	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1C,blaTEM-1C	1	parC_p.T57S	3	Col(pHAD28),Col440II,ColpVC,ColpVC	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_58	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNMII010000001.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12323429 SAMN36502592-rid18815583.denovo.01, whole genome shotgun sequence	153132..153569	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNMII010000032.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12323429 SAMN36502592-rid18815583.guided.18, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197	blaTEM-1C	100	861/861	ABNMII010000019.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12323429 SAMN36502592-rid18815583.denovo.22, whole genome shotgun sequence	5036..5896	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1C	100	861/861	ABNMII010000034.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12323429 SAMN36502592-rid18815583.guided.23, whole genome shotgun sequence	6529..7389	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNMII010000019.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12323429 SAMN36502592-rid18815583.denovo.22, whole genome shotgun sequence	1939..2067	enterobacteriales	Col440II	98.23	282 / 282	ABNMII010000019.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12323429 SAMN36502592-rid18815583.denovo.22, whole genome shotgun sequence	2645..2926		enterobacteriales	ColpVC	96.89	193 / 193	ABNMII010000024.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12323429 SAMN36502592-rid18815583.denovo.28, whole genome shotgun sequence	1524..1716		enterobacteriales	ColpVC	98.96	193 / 193	ABNMII010000025.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12323429 SAMN36502592-rid18815583.denovo.29, whole genome shotgun sequence	805..997																																		avrA	ABNMII010000005.1	151242..152111	99.54	870	0						
GCA_032448425.1_PDT001917265.1_genomic.fna	Salmonella_enterica	0.5227	77.027 KB	19	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNMIJ010000002.1 Salmonella enterica strain PNUSAS388856 SAMN37686055-rid19627243.denovo.002, whole genome shotgun sequence	203638..204075	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNMIJ010000122.1 Salmonella enterica strain PNUSAS388856 SAMN37686055-rid19627243.guided.075, whole genome shotgun sequence	14170..14607	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMIJ010000005.1	94002..94872	99.656	871	0						
GCA_032448525.1_PDT001821201.1_genomic.fna	Salmonella_enterica	0.5213	421.397 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMIP010000001.1 Salmonella enterica strain PNUSAS363642 SAMN36504251-rid18809963.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMIP010000026.1 Salmonella enterica strain PNUSAS363642 SAMN36504251-rid18809963.guided.19, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMIP010000016.1 Salmonella enterica strain PNUSAS363642 SAMN36504251-rid18809963.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNMIP010000016.1 Salmonella enterica strain PNUSAS363642 SAMN36504251-rid18809963.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNMIP010000002.1	553636..554505	99.54	870	0						
GCA_032448545.1_PDT001821202.1_genomic.fna	Salmonella_enterica	0.5205	352.676 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(Yp)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMIO010000001.1 Salmonella enterica strain PNUSAS363648 SAMN36504263-rid18812543.denovo.01, whole genome shotgun sequence	498117..498554	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMIO010000086.1 Salmonella enterica strain PNUSAS363648 SAMN36504263-rid18812543.guided.23, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNMIO010000021.1 Salmonella enterica strain PNUSAS363648 SAMN36504263-rid18812543.denovo.21, whole genome shotgun sequence	26481..26707																																																						avrA	ABNMIO010000008.1	140447..141316	99.425	870	0						
GCA_032448605.1_PDT001821196.1_genomic.fna	Salmonella_enterica	0.5208	515.299 KB	3	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMIT010000001.1 Salmonella enterica strain PNUSAS363655 SAMN36504243-rid18811223.denovo.01, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMIT010000025.1 Salmonella enterica strain PNUSAS363655 SAMN36504243-rid18811223.guided.18, whole genome shotgun sequence	7378..7815	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032448625.1_PDT001821198.1_genomic.fna	Salmonella_enterica	0.5216	228.021 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMIR010000003.1 Salmonella enterica strain PNUSAS363637 SAMN36504269-rid18812523.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNMIR010000047.1 Salmonella enterica strain PNUSAS363637 SAMN36504269-rid18812523.guided.32, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNMIR010000017.1 Salmonella enterica strain PNUSAS363637 SAMN36504269-rid18812523.denovo.17, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNMIR010000017.1 Salmonella enterica strain PNUSAS363637 SAMN36504269-rid18812523.denovo.17, whole genome shotgun sequence	30407..30668		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNMIR010000016.1 Salmonella enterica strain PNUSAS363637 SAMN36504269-rid18812523.denovo.16, whole genome shotgun sequence	77643..77784																																									avrA	ABNMIR010000005.1	157894..158762	100	869	0						
GCA_032448665.1_PDT001821193.1_genomic.fna	Salmonella_enterica	0.5214	287.461 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMIX010000003.1 Salmonella enterica strain PNUSAS363636 SAMN36504254-rid18812513.denovo.03, whole genome shotgun sequence	329955..330392	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMIX010000039.1 Salmonella enterica strain PNUSAS363636 SAMN36504254-rid18812513.guided.24, whole genome shotgun sequence	4163..4600	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMIX010000001.1	503275..504144	99.195	870	0						
GCA_032448685.1_PDT001821194.1_genomic.fna	Salmonella_enterica	0.5212	238.518 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,floR,floR,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	0		1	p0111	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMIV010000001.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.denovo.01, whole genome shotgun sequence	258196..258633	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNMIV010000045.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.denovo.51, whole genome shotgun sequence	1233..2063	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	ABNMIV010000045.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.denovo.51, whole genome shotgun sequence	2069..2872	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNMIV010000058.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.guided.25, whole genome shotgun sequence	13860..14297	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNMIV010000063.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.guided.49, whole genome shotgun sequence	1274..2104	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	ABNMIV010000063.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.guided.49, whole genome shotgun sequence	2110..2913	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNMIV010000045.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.denovo.51, whole genome shotgun sequence	142..1002	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNMIV010000063.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.guided.49, whole genome shotgun sequence	183..1043	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNMIV010000042.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.denovo.47, whole genome shotgun sequence	1618..2831	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNMIV010000062.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.guided.46, whole genome shotgun sequence	1498..2711	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNMIV010000032.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.denovo.33, whole genome shotgun sequence	29286..29942	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNMIV010000061.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.guided.40, whole genome shotgun sequence	1053..1709	Ciprofloxacin	AB187515	sul2	100	816/816	ABNMIV010000045.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.denovo.51, whole genome shotgun sequence	2933..3748	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNMIV010000063.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.guided.49, whole genome shotgun sequence	2974..3789	Sulfamethoxazole	AY034138	tet(A)	99.92	1200/1200	ABNMIV010000032.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.denovo.33, whole genome shotgun sequence	23432..24631	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNMIV010000061.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.guided.40, whole genome shotgun sequence	6364..7563	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNMIV010000050.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.denovo.57, whole genome shotgun sequence	6..479	Trimethoprim	KF921535	dfrA14	100	474/474	ABNMIV010000064.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.guided.56, whole genome shotgun sequence	1217..1690	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	p0111	98.64	885 / 885	ABNMIV010000037.1 Salmonella enterica strain PNUSAS363646 SAMN36504248-rid18813773.denovo.41, whole genome shotgun sequence	1843..2727																																																						avrA	ABNMIV010000002.1	434114..434983	99.885	870	0						
GCA_032448725.1_PDT001821191.1_genomic.fna	Salmonella_enterica	0.5216	714.306 KB	2	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNMIZ010000001.1 Salmonella enterica strain PNUSAS363633 SAMN36504266-rid18809953.denovo.01, whole genome shotgun sequence	1422768..1423205	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNMIZ010000020.1 Salmonella enterica strain PNUSAS363633 SAMN36504266-rid18809953.guided.13, whole genome shotgun sequence	5992..6429	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMIZ010000003.1	197572..198440	99.655	869	0						
GCA_032448765.1_PDT001821185.1_genomic.fna	Salmonella_enterica	0.5207	372.748 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMJB010000001.1 Salmonella enterica strain PNUSAS363628 SAMN36504249-rid18811173.denovo.01, whole genome shotgun sequence	428616..429053	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMJB010000037.1 Salmonella enterica strain PNUSAS363628 SAMN36504249-rid18811173.guided.26, whole genome shotgun sequence	11567..12004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMJB010000008.1	140447..141316	99.54	870	0						
GCA_032448845.1_PDT001821180.1_genomic.fna	Salmonella_enterica	0.5221	438.018 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMJE010000001.1 Salmonella enterica strain PNUSAS363654 SAMN36504264-rid18811153.denovo.01, whole genome shotgun sequence	177319..177756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMJE010000023.1 Salmonella enterica strain PNUSAS363654 SAMN36504264-rid18811153.guided.16, whole genome shotgun sequence	13793..14230	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMJE010000002.1	515592..516461	99.77	870	0						
GCA_032448865.1_PDT001821179.1_genomic.fna	Salmonella_enterica	0.5211	547.814 KB	3	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440II	aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMJF010000001.1 Salmonella enterica strain PNUSAS363644 SAMN36504261-rid18813743.denovo.01, whole genome shotgun sequence	500870..501307	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMJF010000025.1 Salmonella enterica strain PNUSAS363644 SAMN36504261-rid18813743.guided.17, whole genome shotgun sequence	2537..2974	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNMJF010000021.1 Salmonella enterica strain PNUSAS363644 SAMN36504261-rid18813743.denovo.25, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNMJF010000027.1 Salmonella enterica strain PNUSAS363644 SAMN36504261-rid18813743.guided.24, whole genome shotgun sequence	1136..1780	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNMJF010000021.1 Salmonella enterica strain PNUSAS363644 SAMN36504261-rid18813743.denovo.25, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNMJF010000027.1 Salmonella enterica strain PNUSAS363644 SAMN36504261-rid18813743.guided.24, whole genome shotgun sequence	480..610		enterobacteriales	Col440II	97.52	282 / 282	ABNMJF010000020.1 Salmonella enterica strain PNUSAS363644 SAMN36504261-rid18813743.denovo.23, whole genome shotgun sequence	2591..2872																																									avrA	ABNMJF010000003.1	180294..181163	98.966	870	0						
GCA_032448885.1_PDT001821178.1_genomic.fna	Salmonella_enterica	0.52	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNMJG010000011.1 Salmonella enterica strain PNUSAS363647 SAMN36504255-rid18812483.denovo.11, whole genome shotgun sequence	29754..30188	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNMJG010000053.1 Salmonella enterica strain PNUSAS363647 SAMN36504255-rid18812483.guided.36, whole genome shotgun sequence	320..754	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																																						
GCA_032448935.1_PDT001821175.1_genomic.fna	Salmonella_enterica	0.5214	480.935 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMJH010000001.1 Salmonella enterica strain PNUSAS363627 SAMN36504244-rid18811133.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMJH010000022.1 Salmonella enterica strain PNUSAS363627 SAMN36504244-rid18811133.guided.15, whole genome shotgun sequence	39402..39839	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABNMJH010000002.1	553499..554368	99.54	870	0						
GCA_032448955.1_PDT001821174.1_genomic.fna	Salmonella_enterica	0.5211	166.76 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMJI010000001.1 Salmonella enterica strain PNUSAS363620 SAMN36503582-rid18813733.denovo.01, whole genome shotgun sequence	337844..338281	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNMJI010000052.1 Salmonella enterica strain PNUSAS363620 SAMN36503582-rid18813733.guided.34, whole genome shotgun sequence	8022..8459	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNMJI010000034.1 Salmonella enterica strain PNUSAS363620 SAMN36503582-rid18813733.denovo.37, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNMJI010000055.1 Salmonella enterica strain PNUSAS363620 SAMN36503582-rid18813733.guided.40, whole genome shotgun sequence	5701..6906	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABNMJI010000009.1	93865..94734	99.885	870	0						
GCA_032448995.1_PDT001821164.1_genomic.fna	Salmonella_enterica	0.5222	396.478 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMJN010000001.1 Salmonella enterica strain PNUSAS363610 SAMN36503592-rid18813693.denovo.01, whole genome shotgun sequence	683864..684301	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMJN010000029.1 Salmonella enterica strain PNUSAS363610 SAMN36503592-rid18813693.guided.21, whole genome shotgun sequence	2849..3286	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMJN010000002.1	148153..149022	99.77	870	0						
GCA_032449015.1_PDT001821167.1_genomic.fna	Salmonella_enterica	0.5206	695.681 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMJK010000001.1 Salmonella enterica strain PNUSAS363651 SAMN36504252-rid18813703.denovo.01, whole genome shotgun sequence	414617..415054	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMJK010000017.1 Salmonella enterica strain PNUSAS363651 SAMN36504252-rid18813703.guided.14, whole genome shotgun sequence	2131..2568	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032449035.1_PDT001821157.1_genomic.fna	Salmonella_enterica	0.519	215.477 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMJP010000001.1 Salmonella enterica strain 23CT06CL01-S1 SAMN36502839-rid18813663.denovo.01, whole genome shotgun sequence	470673..471110	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMJP010000038.1 Salmonella enterica strain 23CT06CL01-S1 SAMN36502839-rid18813663.denovo.41, whole genome shotgun sequence	6683..7519	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMJP010000038.1 Salmonella enterica strain 23CT06CL01-S1 SAMN36502839-rid18813663.denovo.41, whole genome shotgun sequence	7519..8322	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNMJP010000061.1 Salmonella enterica strain 23CT06CL01-S1 SAMN36502839-rid18813663.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMJP010000063.1 Salmonella enterica strain 23CT06CL01-S1 SAMN36502839-rid18813663.guided.45, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMJP010000063.1 Salmonella enterica strain 23CT06CL01-S1 SAMN36502839-rid18813663.guided.45, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNMJP010000041.1 Salmonella enterica strain 23CT06CL01-S1 SAMN36502839-rid18813663.denovo.46, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNMJP010000062.1 Salmonella enterica strain 23CT06CL01-S1 SAMN36502839-rid18813663.guided.44, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNMJP010000026.1 Salmonella enterica strain 23CT06CL01-S1 SAMN36502839-rid18813663.denovo.29, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNMJP010000038.1 Salmonella enterica strain 23CT06CL01-S1 SAMN36502839-rid18813663.denovo.41, whole genome shotgun sequence	5799..6060		enterobacteriales	IncFII	96.95	262 / 261	ABNMJP010000063.1 Salmonella enterica strain 23CT06CL01-S1 SAMN36502839-rid18813663.guided.45, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABNMJP010000035.1 Salmonella enterica strain 23CT06CL01-S1 SAMN36502839-rid18813663.denovo.38, whole genome shotgun sequence	2153..2525																																		avrA	ABNMJP010000028.1	39484..40353	99.655	870	0						
GCA_032449475.1_PDT001821150.1_genomic.fna	Salmonella_enterica	0.5215	564.424 KB	3	aroC_371,dnaN_435,hemD_8,hisD_196*,purE_39,sucA_437,thrA_446	4024*	35:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_371	dnaN	100	100	dnaN_435	hemD	100	100	hemD_8	hisD	99.8003992015968	100	hisD_196*	purE	100	100	purE_39	sucA	100	100	sucA_437	thrA	100	100	thrA_446	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMKJ010000002.1 Salmonella enterica strain PNUSAS363547 SAMN36502845-rid18811083.denovo.02, whole genome shotgun sequence	140773..141206	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMKJ010000020.1 Salmonella enterica strain PNUSAS363547 SAMN36502845-rid18811083.guided.17, whole genome shotgun sequence	8076..8509	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	97.38	191 / 193	ABNMKJ010000018.1 Salmonella enterica strain PNUSAS363547 SAMN36502845-rid18811083.denovo.21, whole genome shotgun sequence	1517..1707																																																																	
GCA_032449495.1_PDT001821147.1_genomic.fna	Salmonella_enterica	0.5166	246.066 KB	7	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNMKM010000006.1 Salmonella enterica strain PNUSAS363653 SAMN36504265-rid18813633.denovo.06, whole genome shotgun sequence	197676..198113	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNMKM010000061.1 Salmonella enterica strain PNUSAS363653 SAMN36504265-rid18813633.guided.28, whole genome shotgun sequence	4407..4844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNMKM010000012.1 Salmonella enterica strain PNUSAS363653 SAMN36504265-rid18813633.denovo.12, whole genome shotgun sequence	122082..122724	enterobacteriales	IncFII(pMET)	97.75	577 / 577	ABNMKM010000032.1 Salmonella enterica strain PNUSAS363653 SAMN36504265-rid18813633.denovo.34, whole genome shotgun sequence	18897..19473																																																											
GCA_032449535.1_PDT001821146.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMKN010000001.1 Salmonella enterica strain PNUSAS363638 SAMN36504247-rid18809863.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMKN010000026.1 Salmonella enterica strain PNUSAS363638 SAMN36504247-rid18809863.guided.19, whole genome shotgun sequence	5660..6097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMKN010000013.1 Salmonella enterica strain PNUSAS363638 SAMN36504247-rid18809863.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNMKN010000013.1 Salmonella enterica strain PNUSAS363638 SAMN36504247-rid18809863.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNMKN010000002.1	506088..506957	99.54	870	0						
GCA_032449555.1_PDT001821145.1_genomic.fna	Salmonella_enterica	0.5222	532.14 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNMKL010000001.1 Salmonella enterica strain PNUSAS363635 SAMN36504253-rid18811073.denovo.01, whole genome shotgun sequence	693483..693920	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNMKL010000026.1 Salmonella enterica strain PNUSAS363635 SAMN36504253-rid18811073.guided.20, whole genome shotgun sequence	14358..14795	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABNMKL010000014.1 Salmonella enterica strain PNUSAS363635 SAMN36504253-rid18811073.denovo.14, whole genome shotgun sequence	4051..4312																																																						avrA	ABNMKL010000002.1	131916..132785	98.966	870	0						
GCA_032449575.1_PDT001821144.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMKK010000001.1 Salmonella enterica strain PNUSAS363640 SAMN36504268-rid18813623.denovo.01, whole genome shotgun sequence	771821..772258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMKK010000023.1 Salmonella enterica strain PNUSAS363640 SAMN36504268-rid18813623.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMKK010000013.1 Salmonella enterica strain PNUSAS363640 SAMN36504268-rid18813623.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNMKK010000013.1 Salmonella enterica strain PNUSAS363640 SAMN36504268-rid18813623.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNMKK010000002.1	553077..553946	99.54	870	0						
GCA_032449635.1_PDT001821143.1_genomic.fna	Salmonella_enterica	0.521	695.249 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMKP010000001.1 Salmonella enterica strain PNUSAS363629 SAMN36504262-rid18812413.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMKP010000023.1 Salmonella enterica strain PNUSAS363629 SAMN36504262-rid18812413.guided.14, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMKP010000015.1 Salmonella enterica strain PNUSAS363629 SAMN36504262-rid18812413.denovo.16, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABNMKP010000015.1 Salmonella enterica strain PNUSAS363629 SAMN36504262-rid18812413.denovo.16, whole genome shotgun sequence	4078..4339																																																avrA	ABNMKP010000003.1	553534..554403	99.54	870	0						
GCA_032449665.1_PDT001821141.1_genomic.fna	Salmonella_enterica	0.5212	161.24 KB	10	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNMKQ010000034.1 Salmonella enterica strain PNUSAS363634 SAMN36504259-rid18809853.denovo.34, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNMKQ010000068.1 Salmonella enterica strain PNUSAS363634 SAMN36504259-rid18809853.guided.48, whole genome shotgun sequence	11052..11489	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABNMKQ010000023.1 Salmonella enterica strain PNUSAS363634 SAMN36504259-rid18809853.denovo.23, whole genome shotgun sequence	68186..68447																																																						avrA	ABNMKQ010000011.1	93586..94455	98.966	870	0						
GCA_032450085.1_PDT001821134.1_genomic.fna	Salmonella_enterica	0.521	281.922 KB	6	aroC_10,dnaN_71,hemD_43,hisD_12,purE_15,sucA_20,thrA_18	4851	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_71	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_18	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNMKW010000001.1 Salmonella enterica strain PNUSAS363645 SAMN36504242-rid18809823.denovo.01, whole genome shotgun sequence	637733..638170	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNMKW010000032.1 Salmonella enterica strain PNUSAS363645 SAMN36504242-rid18809823.guided.19, whole genome shotgun sequence	8684..9121	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMKW010000003.1	95027..95896	99.54	870	0						
GCA_032450095.1_PDT001821128.1_genomic.fna	Salmonella_enterica	0.5201	444.354 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNMKY010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323436 SAMN36502609-rid18812383.denovo.01, whole genome shotgun sequence	403913..404350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNMKY010000031.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323436 SAMN36502609-rid18812383.guided.15, whole genome shotgun sequence	30266..30703	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNMKY010000011.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323436 SAMN36502609-rid18812383.denovo.11, whole genome shotgun sequence	76880..77021																																																						avrA	ABNMKY010000002.1	150539..151408	99.54	870	0						
GCA_032450175.1_PDT001821138.1_genomic.fna	Salmonella_enterica	0.5214	496.109 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNMKU010000001.1 Salmonella enterica strain PNUSAS363656 SAMN36504250-rid18812403.denovo.01, whole genome shotgun sequence	868224..868661	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNMKU010000022.1 Salmonella enterica strain PNUSAS363656 SAMN36504250-rid18812403.guided.17, whole genome shotgun sequence	6272..6709	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMKU010000003.1	95003..95873	99.426	871	0						
GCA_032450305.1_PDT001821130.1_genomic.fna	Salmonella_enterica	0.5202	194.508 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMLA010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMLA010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.denovo.29, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMLA010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.denovo.29, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNMLA010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.denovo.45, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNMLA010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.denovo.45, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNMLA010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.denovo.56, whole genome shotgun sequence	92..907	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	X62115	aac(6')-Iaa	97.49	438/438	ABNMLA010000057.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.guided.16, whole genome shotgun sequence	13435..13872	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMLA010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.guided.43, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMLA010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.guided.43, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNMLA010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.guided.44, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNMLA010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.guided.44, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNMLA010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.guided.55, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	X62115	sul1	100	840/840	ABNMLA010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.denovo.29, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNMLA010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.guided.43, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNMLA010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.denovo.29, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNMLA010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.guided.32, whole genome shotgun sequence	9501..10700	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNMLA010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.denovo.35, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX1	98.66	374 / 374	ABNMLA010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323423 SAMN36503512-rid18811053.denovo.27, whole genome shotgun sequence	17170..17543																																																avrA	ABNMLA010000002.1	149891..150760	99.655	870	0						
GCA_032450345.1_PDT001821126.1_genomic.fna	Salmonella_enterica	0.521	183.829 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMLD010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323401 SAMN36503510-rid18809803.denovo.01, whole genome shotgun sequence	528791..529228	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMLD010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323401 SAMN36503510-rid18809803.guided.39, whole genome shotgun sequence	11524..11961	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNMLD010000020.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323401 SAMN36503510-rid18809803.denovo.20, whole genome shotgun sequence	64726..65285																																																						avrA	ABNMLD010000003.1	149828..150697	99.655	870	0						
GCA_032450365.1_PDT001821127.1_genomic.fna	Salmonella_enterica	0.5186	146.11 KB	9	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMLC010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323428 SAMN36502589-rid18813923.denovo.12, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMLC010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323428 SAMN36502589-rid18813923.denovo.53, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNMLC010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323428 SAMN36502589-rid18813923.denovo.53, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNMLC010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323428 SAMN36502589-rid18813923.guided.34, whole genome shotgun sequence	15751..16188	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMLC010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323428 SAMN36502589-rid18813923.guided.60, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNMLC010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323428 SAMN36502589-rid18813923.guided.60, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNMLC010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323428 SAMN36502589-rid18813923.denovo.54, whole genome shotgun sequence	1430..2635	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNMLC010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323428 SAMN36502589-rid18813923.guided.56, whole genome shotgun sequence	3900..5105	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNMLC010000037.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323428 SAMN36502589-rid18813923.denovo.40, whole genome shotgun sequence	1155..1836	enterobacteriales	IncFII	96.95	262 / 261	ABNMLC010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323428 SAMN36502589-rid18813923.denovo.53, whole genome shotgun sequence	1831..2092		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNMLC010000029.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323428 SAMN36502589-rid18813923.denovo.29, whole genome shotgun sequence	33445..33586		enterobacteriales	IncX1	100	373 / 373	ABNMLC010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323428 SAMN36502589-rid18813923.denovo.52, whole genome shotgun sequence	2153..2525																																		avrA	ABNMLC010000018.1	102495..103364	99.655	870	0						
GCA_032450385.1_PDT001821125.1_genomic.fna	Salmonella_enterica	0.5206	121.764 KB	14	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMLE010000014.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323408 SAMN36502872-rid18811033.denovo.014, whole genome shotgun sequence	80725..81162	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMLE010000112.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323408 SAMN36502872-rid18811033.guided.055, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNMLE010000067.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323408 SAMN36502872-rid18811033.denovo.070, whole genome shotgun sequence	4567..4708	enterobacteriales	IncX1	100	373 / 373	ABNMLE010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323408 SAMN36502872-rid18811033.denovo.087, whole genome shotgun sequence	2153..2525																																																avrA	ABNMLE010000037.1	39622..40491	99.655	870	0						
GCA_032450415.1_PDT001821129.1_genomic.fna	Salmonella_enterica	0.5212	114.034 KB	12	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNMLB010000007.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323405 SAMN36502869-rid18811043.denovo.07, whole genome shotgun sequence	49850..50287	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMLB010000063.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323405 SAMN36502869-rid18811043.denovo.68, whole genome shotgun sequence	5947..6783	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNMLB010000063.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323405 SAMN36502869-rid18811043.denovo.68, whole genome shotgun sequence	4916..5729	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	V00359	aph(3'')-Ib	100	804/804	ABNMLB010000063.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323405 SAMN36502869-rid18811043.denovo.68, whole genome shotgun sequence	6783..7586	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNMLB010000090.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323405 SAMN36502869-rid18811043.guided.17, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMLB010000094.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323405 SAMN36502869-rid18811043.guided.67, whole genome shotgun sequence	4573..5409	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNMLB010000094.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323405 SAMN36502869-rid18811043.guided.67, whole genome shotgun sequence	5627..6440	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	V00359	aph(3'')-Ib	100	804/804	ABNMLB010000094.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323405 SAMN36502869-rid18811043.guided.67, whole genome shotgun sequence	3770..4573	Streptomycin	AF321551	sul2	99.88	816/816	ABNMLB010000049.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323405 SAMN36502869-rid18811043.denovo.50, whole genome shotgun sequence	2699..3514	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNMLB010000093.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323405 SAMN36502869-rid18811043.guided.65, whole genome shotgun sequence	10036..10851	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNMLB010000067.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323405 SAMN36502869-rid18811043.denovo.73, whole genome shotgun sequence	1194..2399	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNMLB010000095.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323405 SAMN36502869-rid18811043.guided.72, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNMLB010000074.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323405 SAMN36502869-rid18811043.denovo.80, whole genome shotgun sequence	557..687																																																						avrA	ABNMLB010000014.1	102570..103438	99.655	869	0						
GCA_032450435.1_PDT001821124.1_genomic.fna	Salmonella_enterica	0.5205	64.073 KB	27	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncHI2,IncHI2A	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMLG010000025.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323414 SAMN36503998-rid18809793.denovo.025, whole genome shotgun sequence	52242..52679	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMLG010000156.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323414 SAMN36503998-rid18809793.guided.078, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	99.69	325 / 327	ABNMLG010000080.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323414 SAMN36503998-rid18809793.denovo.082, whole genome shotgun sequence	7234..7557	enterobacteriales	IncHI2A	100	630 / 630	ABNMLG010000102.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323414 SAMN36503998-rid18809793.denovo.105, whole genome shotgun sequence	990..1619																																																											
GCA_032450475.1_PDT001821122.1_genomic.fna	Salmonella_enterica	0.5227	156.402 KB	8	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	9,46:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	9,46	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	I 9,46:l,v:1,7	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMLH010000001.1 Salmonella enterica subsp. enterica serovar Give strain FSIS12323413 SAMN36503995-rid18813573.denovo.01, whole genome shotgun sequence	495010..495447	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMLH010000068.1 Salmonella enterica subsp. enterica serovar Give strain FSIS12323413 SAMN36503995-rid18813573.guided.39, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABNMLH010000055.1 Salmonella enterica subsp. enterica serovar Give strain FSIS12323413 SAMN36503995-rid18813573.denovo.58, whole genome shotgun sequence	2246..2354																																																						avrA	ABNMLH010000003.1	156728..157597	98.966	870	0						
GCA_032450535.1_PDT001821111.1_genomic.fna	Salmonella_enterica	0.5205	145.649 KB	11	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNMLN010000008.1 Salmonella enterica strain PNUSAS363617 SAMN36503579-rid18812353.denovo.08, whole genome shotgun sequence	29911..30345	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNMLN010000062.1 Salmonella enterica strain PNUSAS363617 SAMN36503579-rid18812353.guided.47, whole genome shotgun sequence	8076..8510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	ABNMLN010000019.1 Salmonella enterica strain PNUSAS363617 SAMN36503579-rid18812353.denovo.19, whole genome shotgun sequence	23493..24367																																																																	
GCA_032450555.1_PDT001821099.1_genomic.fna	Salmonella_enterica	0.5243	53.66 KB	28	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMLM010000017.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323308 SAMN36502866-rid18809733.denovo.017, whole genome shotgun sequence	12523..12960	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMLM010000151.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323308 SAMN36502866-rid18809733.guided.087, whole genome shotgun sequence	14166..14603	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMLM010000014.1	39430..40299	99.655	870	0						
GCA_032450575.1_PDT001821110.1_genomic.fna	Salmonella_enterica	0.5215	269.089 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMLL010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMLL010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.denovo.28, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMLL010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.denovo.28, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNMLL010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.denovo.40, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNMLL010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.denovo.40, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNMLL010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.guided.18, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMLL010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.guided.38, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMLL010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.guided.38, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNMLL010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.guided.46, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNMLL010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.guided.46, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aac(3)-IV	99.87	777/777	ABNMLL010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.guided.51, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNMLL010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.denovo.47, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNMLL010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.guided.48, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNMLL010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.denovo.44, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNMLL010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.guided.43, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNMLL010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.denovo.28, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNMLL010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.guided.38, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNMLL010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.denovo.28, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNMLL010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.guided.39, whole genome shotgun sequence	850..2049	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNMLL010000030.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323431 SAMN36502601-rid18810993.denovo.32, whole genome shotgun sequence	9108..9667																																																						avrA	ABNMLL010000005.1	95321..96190	99.655	870	0						
GCA_032450595.1_PDT001821113.1_genomic.fna	Salmonella_enterica	0.5228	31.113 KB	46	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	-:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	-	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMLK010000044.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323305 SAMN36502863-rid18812363.denovo.044, whole genome shotgun sequence	14142..14579	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMLK010000284.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323305 SAMN36502863-rid18812363.guided.202, whole genome shotgun sequence	1282..1719	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNMLK010000125.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323305 SAMN36502863-rid18812363.denovo.127, whole genome shotgun sequence	10343..10765	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNMLK010000283.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323305 SAMN36502863-rid18812363.guided.176, whole genome shotgun sequence	4750..5172	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMLK010000006.1	61509..62378	99.195	870	0						
GCA_032450635.1_PDT001821093.1_genomic.fna	Salmonella_enterica	0.5222	94.505 KB	17	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMLO010000003.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323419 SAMN36504006-rid18812283.denovo.003, whole genome shotgun sequence	1557..1994	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMLO010000108.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323419 SAMN36504006-rid18812283.guided.063, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMLO010000072.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323419 SAMN36504006-rid18812283.denovo.075, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNMLO010000077.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323419 SAMN36504006-rid18812283.denovo.080, whole genome shotgun sequence	3421..3682																																																avrA	ABNMLO010000004.1	118904..119773	99.54	870	0						
GCA_032450675.1_PDT001821091.1_genomic.fna	Salmonella_enterica	0.5188	228.57 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMLQ010000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323398 SAMN36503403-rid18812273.denovo.08, whole genome shotgun sequence	86588..87025	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMLQ010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323398 SAMN36503403-rid18812273.denovo.33, whole genome shotgun sequence	33995..34831	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMLQ010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323398 SAMN36503403-rid18812273.denovo.33, whole genome shotgun sequence	34831..35634	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNMLQ010000079.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323398 SAMN36503403-rid18812273.guided.39, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMLQ010000081.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323398 SAMN36503403-rid18812273.guided.55, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMLQ010000081.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323398 SAMN36503403-rid18812273.guided.55, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNMLQ010000056.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323398 SAMN36503403-rid18812273.denovo.61, whole genome shotgun sequence	2289..3494	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNMLQ010000082.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323398 SAMN36503403-rid18812273.guided.60, whole genome shotgun sequence	2310..3515	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNMLQ010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323398 SAMN36503403-rid18812273.denovo.53, whole genome shotgun sequence	1176..1857	enterobacteriales	IncFII	96.95	262 / 261	ABNMLQ010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323398 SAMN36503403-rid18812273.denovo.33, whole genome shotgun sequence	33111..33372		enterobacteriales	IncFII	96.95	262 / 261	ABNMLQ010000081.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323398 SAMN36503403-rid18812273.guided.55, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNMLQ010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323398 SAMN36503403-rid18812273.denovo.45, whole genome shotgun sequence	3732..3873		enterobacteriales	IncX1	100	373 / 373	ABNMLQ010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323398 SAMN36503403-rid18812273.denovo.49, whole genome shotgun sequence	2153..2525																											avrA	ABNMLQ010000027.1	39484..40353	99.655	870	0						
GCA_032450695.1_PDT001821090.1_genomic.fna	Salmonella_enterica	0.5185	236.749 KB	7	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMLR010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323426 SAMN36503515-rid18810963.denovo.12, whole genome shotgun sequence	86588..87025	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMLR010000031.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323426 SAMN36503515-rid18810963.denovo.32, whole genome shotgun sequence	34087..34923	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMLR010000031.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323426 SAMN36503515-rid18810963.denovo.32, whole genome shotgun sequence	34923..35726	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNMLR010000069.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323426 SAMN36503515-rid18810963.guided.25, whole genome shotgun sequence	15493..15930	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMLR010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323426 SAMN36503515-rid18810963.guided.57, whole genome shotgun sequence	2313..3149	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMLR010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323426 SAMN36503515-rid18810963.guided.57, whole genome shotgun sequence	1510..2313	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNMLR010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323426 SAMN36503515-rid18810963.denovo.54, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNMLR010000072.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323426 SAMN36503515-rid18810963.guided.52, whole genome shotgun sequence	4114..5319	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNMLR010000037.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323426 SAMN36503515-rid18810963.denovo.39, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNMLR010000031.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323426 SAMN36503515-rid18810963.denovo.32, whole genome shotgun sequence	33203..33464		enterobacteriales	IncFII	96.95	262 / 261	ABNMLR010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323426 SAMN36503515-rid18810963.guided.57, whole genome shotgun sequence	3772..4033		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNMLR010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323426 SAMN36503515-rid18810963.denovo.47, whole genome shotgun sequence	1762..1903		enterobacteriales	IncX1	100	373 / 373	ABNMLR010000044.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323426 SAMN36503515-rid18810963.denovo.46, whole genome shotgun sequence	7151..7523																											avrA	ABNMLR010000026.1	39484..40353	99.655	870	0						
GCA_032450715.1_PDT001821089.1_genomic.fna	Salmonella_enterica	0.522	312.034 KB	6	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNMLS010000002.1 Salmonella enterica strain PNUSAS363609 SAMN36503588-rid18809713.denovo.02, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNMLS010000034.1 Salmonella enterica strain PNUSAS363609 SAMN36503588-rid18809713.guided.26, whole genome shotgun sequence	4651..5088	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMLS010000004.1	150374..151243	99.77	870	0						
GCA_032450735.1_PDT001821088.1_genomic.fna	Salmonella_enterica	0.5212	406.403 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMLV010000001.1 Salmonella enterica strain PNUSAS363608 SAMN36503586-rid18812263.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMLV010000029.1 Salmonella enterica strain PNUSAS363608 SAMN36503586-rid18812263.guided.20, whole genome shotgun sequence	10657..11094	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMLV010000018.1 Salmonella enterica strain PNUSAS363608 SAMN36503586-rid18812263.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNMLV010000019.1 Salmonella enterica strain PNUSAS363608 SAMN36503586-rid18812263.denovo.22, whole genome shotgun sequence	3414..3675																																																avrA	ABNMLV010000002.1	583725..584594	99.54	870	0						
GCA_032450755.1_PDT001821087.1_genomic.fna	Salmonella_enterica	0.5217	295.921 KB	7	aroC_341,dnaN_11,hemD_8,hisD_404,purE_61,sucA_504,thrA_341	2398	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_341	dnaN	100	100	dnaN_11	hemD	100	100	hemD_8	hisD	100	100	hisD_404	purE	100	100	purE_61	sucA	100	100	sucA_504	thrA	100	100	thrA_341	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNMLT010000004.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323432 SAMN36502611-rid18813503.denovo.04, whole genome shotgun sequence	80618..81055	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNMLT010000046.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323432 SAMN36502611-rid18813503.guided.17, whole genome shotgun sequence	10646..11083	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMLT010000012.1	94379..95248	98.966	870	0						
GCA_032450775.1_PDT001821086.1_genomic.fna	Salmonella_enterica	0.5236	84.635 KB	20	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	-:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	-	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:l,z13:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNMLU010000051.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323412 SAMN36503993-rid18812253.denovo.052, whole genome shotgun sequence	13045..13482	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNMLU010000139.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323412 SAMN36503993-rid18812253.guided.051, whole genome shotgun sequence	15444..15881	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMLU010000011.1	94022..94890	99.655	869	0						
GCA_032450795.1_PDT001821084.1_genomic.fna	Salmonella_enterica	0.523	66.4 KB	22	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMLX010000021.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323420 SAMN36504007-rid18809703.denovo.021, whole genome shotgun sequence	52188..52625	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMLX010000137.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323420 SAMN36504007-rid18809703.guided.082, whole genome shotgun sequence	12454..12891	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNMLX010000106.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323420 SAMN36504007-rid18809703.denovo.109, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABNMLX010000102.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323420 SAMN36504007-rid18809703.denovo.105, whole genome shotgun sequence	3175..3285																																																avrA	ABNMLX010000036.1	43666..44535	99.425	870	0						
GCA_032450815.1_PDT001821085.1_genomic.fna	Salmonella_enterica	0.5231	40.1 KB	39	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		1	ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMLW010000089.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323417 SAMN36503984-rid18810953.denovo.090, whole genome shotgun sequence	12362..12799	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNMLW010000103.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323417 SAMN36503984-rid18810953.denovo.104, whole genome shotgun sequence	12506..13408	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNMLW010000103.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323417 SAMN36503984-rid18810953.denovo.104, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNMLW010000221.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323417 SAMN36503984-rid18810953.guided.107, whole genome shotgun sequence	7383..7820	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNMLW010000225.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323417 SAMN36503984-rid18810953.guided.150, whole genome shotgun sequence	37..939	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNMLW010000226.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323417 SAMN36503984-rid18810953.guided.173, whole genome shotgun sequence	2402..3193	Spectinomycin, Streptomycin	JQ414041	sul2	100	816/816	ABNMLW010000021.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323417 SAMN36503984-rid18810953.denovo.021, whole genome shotgun sequence	44226..45041	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNMLW010000103.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323417 SAMN36503984-rid18810953.denovo.104, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul2	100	816/816	ABNMLW010000220.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323417 SAMN36503984-rid18810953.guided.031, whole genome shotgun sequence	37960..38775	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNMLW010000224.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323417 SAMN36503984-rid18810953.guided.149, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABNMLW010000021.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323417 SAMN36503984-rid18810953.denovo.021, whole genome shotgun sequence	47218..48417	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNMLW010000179.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323417 SAMN36503984-rid18810953.denovo.187, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABNMLW010000220.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323417 SAMN36503984-rid18810953.guided.031, whole genome shotgun sequence	40952..42151	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNMLW010000227.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323417 SAMN36503984-rid18810953.guided.184, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	ColRNAI	90.08	131 / 130	ABNMLW010000153.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323417 SAMN36503984-rid18810953.denovo.159, whole genome shotgun sequence	3981..4111																																																						avrA	ABNMLW010000007.1	81738..82607	99.885	870	0						
GCA_032451035.1_PDT001821067.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMMG010000001.1 Salmonella enterica strain PNUSAS363618 SAMN36503589-rid18813473.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMMG010000024.1 Salmonella enterica strain PNUSAS363618 SAMN36503589-rid18813473.guided.17, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMMG010000017.1 Salmonella enterica strain PNUSAS363618 SAMN36503589-rid18813473.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNMMG010000018.1 Salmonella enterica strain PNUSAS363618 SAMN36503589-rid18813473.denovo.21, whole genome shotgun sequence	3403..3664																																																avrA	ABNMMG010000002.1	553636..554505	99.54	870	0						
GCA_032451055.1_PDT001821066.1_genomic.fna	Salmonella_enterica	0.5218	392.121 KB	4	aroC_22,dnaN_11,hemD_25,hisD_72,purE_655,sucA_123,thrA_4	3253	9:a:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_655	sucA	100	100	sucA_123	thrA	100	100	thrA_4	9	a	1,7	Salmonella enterica subspecies enterica (subspecies I)	Saarbruecken		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMMH010000001.1 Salmonella enterica strain PNUSAS363619 SAMN36503590-rid18812213.denovo.01, whole genome shotgun sequence	182031..182468	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMMH010000029.1 Salmonella enterica strain PNUSAS363619 SAMN36503590-rid18812213.guided.22, whole genome shotgun sequence	7522..7959	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMMH010000003.1	94220..95089	99.425	870	0						
GCA_032451075.1_PDT001821065.1_genomic.fna	Salmonella_enterica	0.523	225.57 KB	6	aroC_43,dnaN_41,hemD_16,hisD_13,purE_12,sucA_13,thrA_4	195	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMMN010000005.1 Salmonella enterica strain PNUSAS363611 SAMN36503594-rid18810883.denovo.05, whole genome shotgun sequence	153895..154332	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMMN010000035.1 Salmonella enterica strain PNUSAS363611 SAMN36503594-rid18810883.guided.30, whole genome shotgun sequence	1412..1849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032451295.1_PDT001917263.1_genomic.fna	Salmonella_enterica	0.5226	59.171 KB	24	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNMMU010000059.1 Salmonella enterica strain PNUSAS388854 SAMN37686053-rid19627223.denovo.059, whole genome shotgun sequence	11367..11804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNMMU010000159.1 Salmonella enterica strain PNUSAS388854 SAMN37686053-rid19627223.guided.112, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNMMU010000112.1 Salmonella enterica strain PNUSAS388854 SAMN37686053-rid19627223.denovo.115, whole genome shotgun sequence	239..369																																																						avrA	ABNMMU010000017.1	61407..62276	99.425	870	0						
GCA_032451315.1_PDT001821076.1_genomic.fna	Salmonella_enterica	0.5218	78.943 KB	21	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,p,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,p,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,p,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMMV010000005.1 Salmonella enterica subsp. enterica strain FSIS12323421 SAMN36504008-rid18812233.denovo.005, whole genome shotgun sequence	110655..111092	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMMV010000130.1 Salmonella enterica subsp. enterica strain FSIS12323421 SAMN36504008-rid18812233.guided.054, whole genome shotgun sequence	14092..14529	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNMMV010000088.1 Salmonella enterica subsp. enterica strain FSIS12323421 SAMN36504008-rid18812233.denovo.091, whole genome shotgun sequence	4664..5197	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNMMV010000096.1 Salmonella enterica subsp. enterica strain FSIS12323421 SAMN36504008-rid18812233.denovo.100, whole genome shotgun sequence	185..326																																																											
GCA_032451335.1_PDT001821075.1_genomic.fna	Salmonella_enterica	0.5221	386.549 KB	4	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNMMX010000001.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.denovo.01, whole genome shotgun sequence	1111706..1112143	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMMX010000020.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.denovo.22, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNMMX010000020.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.denovo.22, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNMMX010000020.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.denovo.22, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNMMX010000020.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.denovo.22, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNMMX010000020.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.denovo.22, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNMMX010000035.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.guided.25, whole genome shotgun sequence	2238..2675	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMMX010000036.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.guided.26, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	ABNMMX010000036.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.guided.26, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	ABNMMX010000036.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.guided.26, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	ABNMMX010000036.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.guided.26, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	ABNMMX010000036.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.guided.26, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNMMX010000037.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.guided.27, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNMMX010000037.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.guided.27, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNMMX010000037.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.guided.27, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNMMX010000037.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.guided.27, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNMMX010000037.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.guided.27, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNMMX010000021.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.denovo.23, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNMMX010000034.1 Salmonella enterica strain PNUSAS363616 SAMN36503593-rid18810923.guided.24, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMMX010000007.1	139897..140767	99.541	871	0						
GCA_032451355.1_PDT001821072.1_genomic.fna	Salmonella_enterica	0.5226	41.341 KB	35	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMMZ010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323410 SAMN36503988-rid18813913.denovo.060, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMMZ010000251.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323410 SAMN36503988-rid18813913.guided.095, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNMMZ010000166.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323410 SAMN36503988-rid18813913.denovo.169, whole genome shotgun sequence	1340..2021	enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNMMZ010000183.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323410 SAMN36503988-rid18813913.denovo.186, whole genome shotgun sequence	229..370		enterobacteriales	IncX1	100	373 / 373	ABNMMZ010000199.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323410 SAMN36503988-rid18813913.denovo.202, whole genome shotgun sequence	1118..1490																																									avrA	ABNMMZ010000008.1	79032..79901	99.655	870	0						
GCA_032451375.1_PDT001821073.1_genomic.fna	Salmonella_enterica	0.5234	55.818 KB	30	aroC_5,dnaN_14,hemD_21,hisD_9,purE_6,sucA_12,thrA_17	49	-:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	-	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMMY010000019.1 Salmonella enterica subsp. enterica serovar Saintpaul strain FSIS12323415 SAMN36504000-rid18810913.denovo.019, whole genome shotgun sequence	12484..12921	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNMMY010000147.1 Salmonella enterica subsp. enterica serovar Saintpaul strain FSIS12323415 SAMN36504000-rid18810913.guided.079, whole genome shotgun sequence	15457..15894	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMMY010000041.1	39598..40467	99.54	870	0						
GCA_032451395.1_PDT001821074.1_genomic.fna	Salmonella_enterica	0.5236	60.495 KB	28	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:z10:e,n,z15	4	aac(6')-Iaa,aph(3')-Ia,aph(3')-Ia,blaTEM-1B,blaTEM-1B,tet(A),tet(A)	1	parC_p.T57S	1	IncN	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMMW010000020.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12323411 SAMN36503991-rid18809683.denovo.020, whole genome shotgun sequence	52246..52683	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNMMW010000119.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12323411 SAMN36503991-rid18809683.denovo.122, whole genome shotgun sequence	1625..2440	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(3')-Ia	100	816/816	ABNMMW010000188.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12323411 SAMN36503991-rid18809683.guided.126, whole genome shotgun sequence	3943..4758	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	blaTEM-1B	100	861/861	ABNMMW010000087.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12323411 SAMN36503991-rid18809683.denovo.088, whole genome shotgun sequence	980..1840	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNMMW010000186.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12323411 SAMN36503991-rid18809683.guided.089, whole genome shotgun sequence	832..1692	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	ABNMMW010000087.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12323411 SAMN36503991-rid18809683.denovo.088, whole genome shotgun sequence	2708..3907	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNMMW010000186.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12323411 SAMN36503991-rid18809683.guided.089, whole genome shotgun sequence	2560..3759	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																							parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncN	99.42	514 / 514	ABNMMW010000164.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12323411 SAMN36503991-rid18809683.denovo.169, whole genome shotgun sequence	289..802																																																						avrA	ABNMMW010000008.1	95313..96182	99.195	870	0						
GCA_032451415.1_PDT001821071.1_genomic.fna	Salmonella_enterica	0.5229	54.319 KB	32	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMNA010000020.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.denovo.020, whole genome shotgun sequence	11321..11758	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMNA010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.denovo.071, whole genome shotgun sequence	22662..23453	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMNA010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.denovo.071, whole genome shotgun sequence	22662..23453	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNMNA010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.denovo.134, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNMNA010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.denovo.134, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNMNA010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.guided.089, whole genome shotgun sequence	14165..14602	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMNA010000182.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.guided.136, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMNA010000182.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.guided.136, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNMNA010000185.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.guided.158, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNMNA010000185.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.guided.158, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNMNA010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.denovo.140, whole genome shotgun sequence	917..1792	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNMNA010000184.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.guided.152, whole genome shotgun sequence	21..896	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNMNA010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.denovo.135, whole genome shotgun sequence	2807..4020	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNMNA010000183.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.guided.142, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNMNA010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.denovo.071, whole genome shotgun sequence	21318..22157	Sulfamethoxazole	U12338	sul1	100	840/840	ABNMNA010000182.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.guided.136, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNMNA010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.denovo.071, whole genome shotgun sequence	7602..8801	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNMNA010000179.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.guided.109, whole genome shotgun sequence	7955..9154	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNMNA010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323418 SAMN36503985-rid18812223.denovo.123, whole genome shotgun sequence	5321..5880																																																						avrA	ABNMNA010000010.1	83091..83960	99.655	870	0						
GCA_032451425.1_PDT001821070.1_genomic.fna	Salmonella_enterica	0.5236	39.052 KB	37	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMNB010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.denovo.060, whole genome shotgun sequence	12533..12970	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMNB010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.denovo.116, whole genome shotgun sequence	11959..12750	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMNB010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.denovo.116, whole genome shotgun sequence	11959..12750	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNMNB010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.denovo.157, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNMNB010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.denovo.157, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNMNB010000222.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.denovo.231, whole genome shotgun sequence	93..908	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	aac(6')-Iaa	97.49	438/438	ABNMNB010000241.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.guided.135, whole genome shotgun sequence	7373..7810	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMNB010000242.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.guided.145, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMNB010000242.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.guided.145, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNMNB010000243.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.guided.165, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNMNB010000243.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.guided.165, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNMNB010000247.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.guided.226, whole genome shotgun sequence	126..941	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	floR	98.19	1214/1215	ABNMNB010000159.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.denovo.163, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNMNB010000245.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.guided.190, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNMNB010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.denovo.116, whole genome shotgun sequence	10615..11454	Sulfamethoxazole	U12338	sul1	100	840/840	ABNMNB010000242.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.guided.145, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNMNB010000151.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.denovo.155, whole genome shotgun sequence	3238..4437	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNMNB010000244.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.guided.167, whole genome shotgun sequence	286..1485	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNMNB010000150.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.denovo.154, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNMNB010000246.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.guided.204, whole genome shotgun sequence	195..668	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNMNB010000138.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323416 SAMN36503982-rid18810903.denovo.141, whole genome shotgun sequence	5519..6078																																																						avrA	ABNMNB010000014.1	62086..62955	99.655	870	0						
GCA_032451475.1_PDT001821063.1_genomic.fna	Salmonella_enterica	0.5204	321.977 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMNF010000001.1 Salmonella enterica strain PNUSAS363607 SAMN36503580-rid18810873.denovo.01, whole genome shotgun sequence	774424..774861	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMNF010000031.1 Salmonella enterica strain PNUSAS363607 SAMN36503580-rid18810873.guided.25, whole genome shotgun sequence	1310..1747	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMNF010000019.1 Salmonella enterica strain PNUSAS363607 SAMN36503580-rid18810873.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNMNF010000021.1 Salmonella enterica strain PNUSAS363607 SAMN36503580-rid18810873.denovo.23, whole genome shotgun sequence	3391..3652		enterobacteriales	IncX1	98.93	374 / 374	ABNMNF010000016.1 Salmonella enterica strain PNUSAS363607 SAMN36503580-rid18810873.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNMNF010000002.1	553553..554422	99.54	870	0						
GCA_032451515.1_PDT001821053.1_genomic.fna	Salmonella_enterica	0.5222	225.581 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMNI010000002.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323424 SAMN36503513-rid18810843.denovo.02, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMNI010000042.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323424 SAMN36503513-rid18810843.guided.26, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032451535.1_PDT001821051.1_genomic.fna	Salmonella_enterica	0.5211	480.935 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMNG010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323399 SAMN36503404-rid18812163.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMNG010000027.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323399 SAMN36503404-rid18812163.guided.15, whole genome shotgun sequence	26776..27213	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMNG010000016.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323399 SAMN36503404-rid18812163.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNMNG010000018.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323399 SAMN36503404-rid18812163.denovo.21, whole genome shotgun sequence	3369..3630																																																avrA	ABNMNG010000002.1	553636..554505	99.54	870	0						
GCA_032451555.1_PDT001821048.1_genomic.fna	Salmonella_enterica	0.5223	228.197 KB	7	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMNJ010000001.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12323402 SAMN36503511-rid18812153.denovo.01, whole genome shotgun sequence	177113..177550	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMNJ010000043.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12323402 SAMN36503511-rid18812153.guided.24, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMNJ010000009.1	122538..123407	99.77	870	0						
GCA_032451595.1_PDT001821047.1_genomic.fna	Salmonella_enterica	0.5212	151.63 KB	11	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMNK010000001.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12323422 SAMN36503516-rid18813443.denovo.01, whole genome shotgun sequence	351029..351466	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMNK010000075.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12323422 SAMN36503516-rid18813443.guided.40, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMNK010000010.1	136215..137084	99.195	870	0						
GCA_032451615.1_PDT001821046.1_genomic.fna	Salmonella_enterica	0.5216	225.551 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMNL010000001.1 Salmonella enterica strain PNUSAS363612 SAMN36503581-rid18813433.denovo.01, whole genome shotgun sequence	392621..393058	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNMNL010000052.1 Salmonella enterica strain PNUSAS363612 SAMN36503581-rid18813433.guided.40, whole genome shotgun sequence	66..503	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	100	643 / 643	ABNMNL010000024.1 Salmonella enterica strain PNUSAS363612 SAMN36503581-rid18813433.denovo.24, whole genome shotgun sequence	44721..45363	enterobacteriales	IncFII(S)	100	262 / 262	ABNMNL010000024.1 Salmonella enterica strain PNUSAS363612 SAMN36503581-rid18813433.denovo.24, whole genome shotgun sequence	29378..29639																																																avrA	ABNMNL010000009.1	95221..96090	99.885	870	0						
GCA_032451635.1_PDT001821044.1_genomic.fna	Salmonella_enterica	0.5218	191.025 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMNO010000001.1 Salmonella enterica strain PNUSAS363615 SAMN36503587-rid18810833.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNMNO010000045.1 Salmonella enterica strain PNUSAS363615 SAMN36503587-rid18810833.guided.32, whole genome shotgun sequence	20193..20630	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNMNO010000027.1 Salmonella enterica strain PNUSAS363615 SAMN36503587-rid18810833.denovo.27, whole genome shotgun sequence	44730..45372	enterobacteriales	IncFII(S)	100	262 / 262	ABNMNO010000027.1 Salmonella enterica strain PNUSAS363615 SAMN36503587-rid18810833.denovo.27, whole genome shotgun sequence	29384..29645		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNMNO010000021.1 Salmonella enterica strain PNUSAS363615 SAMN36503587-rid18810833.denovo.21, whole genome shotgun sequence	69699..69840																																									avrA	ABNMNO010000008.1	143595..144463	100	869	0						
GCA_032451655.1_PDT001821045.1_genomic.fna	Salmonella_enterica	0.5208	190.742 KB	9	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMNN010000008.1 Salmonella enterica strain PNUSAS363614 SAMN36503584-rid18813423.denovo.08, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMNN010000067.1 Salmonella enterica strain PNUSAS363614 SAMN36503584-rid18813423.guided.44, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMNN010000001.1	93990..94858	99.31	870	0						
GCA_032451675.1_PDT001821043.1_genomic.fna	Salmonella_enterica	0.5214	141.658 KB	12	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	Col(pHAD28),Col440I,ColpVC,ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNMNM010000042.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323425 SAMN36503514-rid18810823.denovo.43, whole genome shotgun sequence	8712..9149	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNMNM010000066.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323425 SAMN36503514-rid18810823.guided.49, whole genome shotgun sequence	8733..9170	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNMNM010000054.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323425 SAMN36503514-rid18810823.denovo.57, whole genome shotgun sequence	4453..4583	enterobacteriales	Col440I	91.74	109 / 114	ABNMNM010000054.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323425 SAMN36503514-rid18810823.denovo.57, whole genome shotgun sequence	2246..2354		enterobacteriales	ColpVC	98.96	193 / 193	ABNMNM010000058.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323425 SAMN36503514-rid18810823.denovo.61, whole genome shotgun sequence	519..711		enterobacteriales	ColpVC	98.96	193 / 193	ABNMNM010000060.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323425 SAMN36503514-rid18810823.denovo.63, whole genome shotgun sequence	805..997		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNMNM010000031.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323425 SAMN36503514-rid18810823.denovo.31, whole genome shotgun sequence	8688..8829																											avrA	ABNMNM010000006.1	145444..146313	99.425	870	0						
GCA_032451755.1_PDT001821040.1_genomic.fna	Salmonella_enterica	0.5213	406.326 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMNR010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323400 SAMN36503405-rid18813413.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMNR010000030.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323400 SAMN36503405-rid18813413.guided.18, whole genome shotgun sequence	17976..18413	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMNR010000020.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323400 SAMN36503405-rid18813413.denovo.23, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNMNR010000023.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323400 SAMN36503405-rid18813413.denovo.26, whole genome shotgun sequence	3404..3665																																																avrA	ABNMNR010000002.1	553432..554301	99.54	870	0						
GCA_032451795.1_PDT001821039.1_genomic.fna	Salmonella_enterica	0.5217	310.392 KB	6	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMNS010000003.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323244 SAMN36503402-rid18809633.denovo.03, whole genome shotgun sequence	346600..347037	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMNS010000049.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323244 SAMN36503402-rid18809633.guided.16, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNMNS010000034.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323244 SAMN36503402-rid18809633.denovo.37, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABNMNS010000031.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323244 SAMN36503402-rid18809633.denovo.34, whole genome shotgun sequence	3175..3285																																																avrA	ABNMNS010000005.1	95269..96138	99.425	870	0						
GCA_032451835.1_PDT001821035.1_genomic.fna	Salmonella_enterica	0.5231	75.09 KB	20	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNMNV010000023.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323407 SAMN36502871-rid18813393.denovo.023, whole genome shotgun sequence	13090..13527	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNMNV010000131.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323407 SAMN36502871-rid18813393.guided.083, whole genome shotgun sequence	7148..7585	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNMNV010000103.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323407 SAMN36502871-rid18813393.denovo.106, whole genome shotgun sequence	557..687																																																						avrA	ABNMNV010000015.1	82990..83859	99.54	870	0						
GCA_032451855.1_PDT001821034.1_genomic.fna	Salmonella_enterica	0.5243	45.457 KB	33	aroC_14,dnaN_72,hemD_21,hisD_12,purE_489,sucA_19,thrA_15	2451	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_489	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNMNW010000013.1 Salmonella enterica subsp. enterica serovar Litchfield strain FSIS12323403 SAMN36502867-rid18809623.denovo.013, whole genome shotgun sequence	11295..11732	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNMNW010000200.1 Salmonella enterica subsp. enterica serovar Litchfield strain FSIS12323403 SAMN36502867-rid18809623.guided.105, whole genome shotgun sequence	13564..14001	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMNW010000022.1	43389..44258	99.77	870	0						
GCA_032451875.1_PDT001821033.1_genomic.fna	Salmonella_enterica	0.5224	53.71 KB	32	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMNX010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323404 SAMN36502868-rid18810803.denovo.003, whole genome shotgun sequence	75981..76418	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMNX010000104.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323404 SAMN36502868-rid18810803.denovo.104, whole genome shotgun sequence	11942..12733	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMNX010000104.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323404 SAMN36502868-rid18810803.denovo.104, whole genome shotgun sequence	11942..12733	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNMNX010000201.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323404 SAMN36502868-rid18810803.guided.120, whole genome shotgun sequence	8093..8530	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMNX010000205.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323404 SAMN36502868-rid18810803.guided.144, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMNX010000205.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323404 SAMN36502868-rid18810803.guided.144, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNMNX010000104.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323404 SAMN36502868-rid18810803.denovo.104, whole genome shotgun sequence	10598..11437	Sulfamethoxazole	U12338	sul1	100	840/840	ABNMNX010000205.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323404 SAMN36502868-rid18810803.guided.144, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNMNX010000132.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323404 SAMN36502868-rid18810803.denovo.133, whole genome shotgun sequence	1853..3052	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNMNX010000202.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323404 SAMN36502868-rid18810803.guided.134, whole genome shotgun sequence	1884..3083	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNMNX010000151.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323404 SAMN36502868-rid18810803.denovo.156, whole genome shotgun sequence	848..1407	enterobacteriales	IncX1	98.93	374 / 374	ABNMNX010000193.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323404 SAMN36502868-rid18810803.denovo.198, whole genome shotgun sequence	168..541																																																avrA	ABNMNX010000042.1	39430..40299	99.655	870	0						
GCA_032451895.1_PDT001821038.1_genomic.fna	Salmonella_enterica	0.5225	58.941 KB	27	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMNT010000016.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323409 SAMN36502873-rid18810813.denovo.016, whole genome shotgun sequence	75568..76005	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNMNT010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323409 SAMN36502873-rid18810813.denovo.134, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNMNT010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323409 SAMN36502873-rid18810813.denovo.134, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNMNT010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323409 SAMN36502873-rid18810813.guided.073, whole genome shotgun sequence	8128..8565	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNMNT010000162.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323409 SAMN36502873-rid18810813.guided.133, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNMNT010000162.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323409 SAMN36502873-rid18810813.guided.133, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNMNT010000132.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323409 SAMN36502873-rid18810813.denovo.138, whole genome shotgun sequence	928..1803	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNMNT010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323409 SAMN36502873-rid18810813.guided.136, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNMNT010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323409 SAMN36502873-rid18810813.denovo.127, whole genome shotgun sequence	3189..4402	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNMNT010000161.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323409 SAMN36502873-rid18810813.guided.130, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNMNT010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323409 SAMN36502873-rid18810813.denovo.114, whole genome shotgun sequence	5423..5982																																																						avrA	ABNMNT010000008.1	105358..106227	99.655	870	0						
GCA_032451915.1_PDT001821037.1_genomic.fna	Salmonella_enterica	0.5233	225.189 KB	6	aroC_140,dnaN_105,hemD_85,hisD_93,purE_14,sucA_10,thrA_3	440	-:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_85	hisD	100	100	hisD_93	purE	100	100	purE_14	sucA	100	100	sucA_10	thrA	100	100	thrA_3	-	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMNU010000001.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS12323406 SAMN36502870-rid18813403.denovo.01, whole genome shotgun sequence	470548..470985	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMNU010000049.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS12323406 SAMN36502870-rid18813403.guided.35, whole genome shotgun sequence	13617..14054	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.8	129 / 131	ABNMNU010000042.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS12323406 SAMN36502870-rid18813403.denovo.45, whole genome shotgun sequence	1827..1955	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNMNU010000044.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS12323406 SAMN36502870-rid18813403.denovo.47, whole genome shotgun sequence	666..796																																																											
GCA_032451935.1_PDT001821030.1_genomic.fna	Salmonella_enterica	0.5212	412.519 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMNZ010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323434 SAMN36502613-rid18813383.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMNZ010000029.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323434 SAMN36502613-rid18813383.guided.22, whole genome shotgun sequence	4008..4445	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMNZ010000018.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323434 SAMN36502613-rid18813383.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNMNZ010000020.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323434 SAMN36502613-rid18813383.denovo.23, whole genome shotgun sequence	3418..3679																																																avrA	ABNMNZ010000002.1	553636..554505	99.54	870	0						
GCA_032451955.1_PDT001821029.1_genomic.fna	Salmonella_enterica	0.5222	276.96 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMOA010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323437 SAMN36502610-rid18809613.denovo.01, whole genome shotgun sequence	493752..494189	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMOA010000047.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323437 SAMN36502610-rid18809613.guided.28, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032451975.1_PDT001821031.1_genomic.fna	Salmonella_enterica	0.5226	52.913 KB	27	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMNY010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323307 SAMN36502865-rid18812123.denovo.054, whole genome shotgun sequence	12504..12941	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMNY010000187.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323307 SAMN36502865-rid18812123.guided.124, whole genome shotgun sequence	3942..4379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABNMNY010000129.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323307 SAMN36502865-rid18812123.denovo.132, whole genome shotgun sequence	2246..2354	enterobacteriales	IncI1-I(Alpha)	94.93	138 / 142	ABNMNY010000078.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323307 SAMN36502865-rid18812123.denovo.078, whole genome shotgun sequence	4451..4586																																																avrA	ABNMNY010000036.1	39484..40353	99.655	870	0						
GCA_032452015.1_PDT001821028.1_genomic.fna	Salmonella_enterica	0.5214	194.508 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMOC010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.denovo.01, whole genome shotgun sequence	573959..574396	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMOC010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.denovo.28, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMOC010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.denovo.28, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNMOC010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.denovo.50, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNMOC010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.denovo.50, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNMOC010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.guided.30, whole genome shotgun sequence	20578..21015	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMOC010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.guided.37, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMOC010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.guided.37, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNMOC010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.guided.49, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNMOC010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.guided.49, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNMOC010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.denovo.54, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNMOC010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.guided.52, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNMOC010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.denovo.44, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNMOC010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.guided.45, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNMOC010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.denovo.28, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNMOC010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.guided.37, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNMOC010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.denovo.28, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNMOC010000057.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.guided.35, whole genome shotgun sequence	1985..3184	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNMOC010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.denovo.43, whole genome shotgun sequence	3121..3594	Trimethoprim	AF393510	dfrA14	100	474/474	ABNMOC010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.guided.51, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNMOC010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323433 SAMN36502612-rid18810793.denovo.33, whole genome shotgun sequence	9109..9668																																																						avrA	ABNMOC010000002.1	149871..150740	99.655	870	0						
GCA_032452035.1_PDT001821027.1_genomic.fna	Salmonella_enterica	0.5221	410.755 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMOE010000001.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12323435 SAMN36502608-rid18813373.denovo.01, whole genome shotgun sequence	482024..482461	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMOE010000026.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12323435 SAMN36502608-rid18813373.guided.20, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMOE010000002.1	563785..564654	99.77	870	0						
GCA_032452575.1_PDT001917428.1_genomic.fna	Salmonella_enterica	0.5212	259.36 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMOV010000001.1 Salmonella enterica strain PNUSAS389187 SAMN37690847-rid19628673.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMOV010000042.1 Salmonella enterica strain PNUSAS389187 SAMN37690847-rid19628673.guided.27, whole genome shotgun sequence	1268..1705	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMOV010000023.1 Salmonella enterica strain PNUSAS389187 SAMN37690847-rid19628673.denovo.24, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNMOV010000025.1 Salmonella enterica strain PNUSAS389187 SAMN37690847-rid19628673.denovo.28, whole genome shotgun sequence	3439..3700																																																avrA	ABNMOV010000002.1	553029..553898	99.54	870	0						
GCA_032452595.1_PDT001917436.1_genomic.fna	Salmonella_enterica	0.5213	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMOU010000001.1 Salmonella enterica strain PNUSAS389084 SAMN37690963-rid19628743.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMOU010000024.1 Salmonella enterica strain PNUSAS389084 SAMN37690963-rid19628743.guided.14, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMOU010000017.1 Salmonella enterica strain PNUSAS389084 SAMN37690963-rid19628743.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNMOU010000014.1 Salmonella enterica strain PNUSAS389084 SAMN37690963-rid19628743.denovo.15, whole genome shotgun sequence	3859..4120																																																avrA	ABNMOU010000002.1	553181..554050	99.54	870	0						
GCA_032452615.1_PDT001917434.1_genomic.fna	Salmonella_enterica	0.5205	724.561 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNMOS010000001.1 Salmonella enterica strain PNUSAS389085 SAMN37690964-rid19628723.denovo.01, whole genome shotgun sequence	596405..596842	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNMOS010000020.1 Salmonella enterica strain PNUSAS389085 SAMN37690964-rid19628723.guided.12, whole genome shotgun sequence	36826..37263	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNMOS010000011.1 Salmonella enterica strain PNUSAS389085 SAMN37690964-rid19628723.denovo.11, whole genome shotgun sequence	34957..35490																																																						avrA	ABNMOS010000003.1	573375..574243	99.425	870	0						
GCA_032452635.1_PDT001917439.1_genomic.fna	Salmonella_enterica	0.5213	282.835 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMOT010000001.1 Salmonella enterica strain PNUSAS389081 SAMN37690966-rid19628773.denovo.01, whole genome shotgun sequence	580675..581112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNMOT010000040.1 Salmonella enterica strain PNUSAS389081 SAMN37690966-rid19628773.guided.25, whole genome shotgun sequence	30268..30705	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNMOT010000028.1 Salmonella enterica strain PNUSAS389081 SAMN37690966-rid19628773.denovo.32, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNMOT010000043.1 Salmonella enterica strain PNUSAS389081 SAMN37690966-rid19628773.guided.31, whole genome shotgun sequence	10016..11221	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABNMOT010000002.1	643865..644734	99.885	870	0						
GCA_032452655.1_PDT001917425.1_genomic.fna	Salmonella_enterica	0.5205	500.811 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,tet(B),tet(A),tet(B),tet(A),tet(A)	1	parC_p.T57S	2	IncI1-I(Alpha),IncI1-I(Alpha),IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNMOW010000001.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.denovo.01, whole genome shotgun sequence	456549..456986	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMOW010000020.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.denovo.24, whole genome shotgun sequence	548..1384	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMOW010000020.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.denovo.24, whole genome shotgun sequence	1384..2187	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	ABNMOW010000033.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.guided.19, whole genome shotgun sequence	16112..16549	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMOW010000036.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.guided.23, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMOW010000036.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.guided.23, whole genome shotgun sequence	5879..6682	Streptomycin	AF321551	blaTEM-1A	100	861/861	ABNMOW010000020.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.denovo.24, whole genome shotgun sequence	3225..4085	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNMOW010000036.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.guided.23, whole genome shotgun sequence	3981..4841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	ABNMOW010000018.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.denovo.18, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNMOW010000039.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNMOW010000020.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.denovo.24, whole genome shotgun sequence	2248..3063	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNMOW010000036.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.guided.23, whole genome shotgun sequence	5003..5818	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNMOW010000013.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.denovo.13, whole genome shotgun sequence	65917..67122	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1226/1275	ABNMOW010000024.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.denovo.32, whole genome shotgun sequence	692..1917	Doxycycline, Tetracycline	AF534183	tet(B)	100	1206/1206	ABNMOW010000035.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.guided.21, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNMOW010000037.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.guided.25, whole genome shotgun sequence	788..1987	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABNMOW010000040.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.guided.31, whole genome shotgun sequence	713..1987	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNMOW010000013.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.denovo.13, whole genome shotgun sequence	73508..73649	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNMOW010000035.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.guided.21, whole genome shotgun sequence	3169..3310		enterobacteriales	IncR	100	251 / 251	ABNMOW010000018.1 Salmonella enterica strain PNUSAS389189 SAMN37690848-rid19628643.denovo.18, whole genome shotgun sequence	11449..11699																																									avrA	ABNMOW010000002.1	130389..131258	99.54	870	0						
GCA_032452715.1_PDT001917432.1_genomic.fna	Salmonella_enterica	0.5189	141.168 KB	13	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_19,thrA_1	679	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMPE010000014.1 Salmonella enterica strain PNUSAS389083 SAMN37690909-rid19628713.denovo.014, whole genome shotgun sequence	59254..59691	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMPE010000101.1 Salmonella enterica strain PNUSAS389083 SAMN37690909-rid19628713.guided.077, whole genome shotgun sequence	3820..4257	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pN55391)	98.75	560 / 560	ABNMPE010000028.1 Salmonella enterica strain PNUSAS389083 SAMN37690909-rid19628713.denovo.028, whole genome shotgun sequence	54743..55302																																																						avrA	ABNMPE010000008.1	133444..134310	98.966	870	0						
GCA_032452745.1_PDT001917427.1_genomic.fna	Salmonella_enterica	0.5219	375.184 KB	5	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	2	Col(pHAD28),ColpVC	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNMPA010000001.1 Salmonella enterica strain PNUSAS389190 SAMN37690846-rid19628663.denovo.01, whole genome shotgun sequence	149956..150393	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNMPA010000039.1 Salmonella enterica strain PNUSAS389190 SAMN37690846-rid19628663.guided.21, whole genome shotgun sequence	9891..10328	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNMPA010000029.1 Salmonella enterica strain PNUSAS389190 SAMN37690846-rid19628663.denovo.32, whole genome shotgun sequence	967..1095	enterobacteriales	ColpVC	100	193 / 193	ABNMPA010000030.1 Salmonella enterica strain PNUSAS389190 SAMN37690846-rid19628663.denovo.33, whole genome shotgun sequence	192..384																																																avrA	ABNMPA010000003.1	95115..95984	99.31	870	0						
GCA_032452785.1_PDT001917426.1_genomic.fna	Salmonella_enterica	0.5215	225.556 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	ColpVC,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMPC010000001.1 Salmonella enterica strain PNUSAS389186 SAMN37690845-rid19628653.denovo.01, whole genome shotgun sequence	37883..38320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.73	368/438	ABNMPC010000061.1 Salmonella enterica strain PNUSAS389186 SAMN37690845-rid19628653.guided.58, whole genome shotgun sequence	1..368	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	97.38	191 / 193	ABNMPC010000046.1 Salmonella enterica strain PNUSAS389186 SAMN37690845-rid19628653.denovo.48, whole genome shotgun sequence	146..336	enterobacteriales	IncFIB(S)	100	643 / 643	ABNMPC010000018.1 Salmonella enterica strain PNUSAS389186 SAMN37690845-rid19628653.denovo.18, whole genome shotgun sequence	6819..7461		enterobacteriales	IncFII(S)	100	262 / 262	ABNMPC010000018.1 Salmonella enterica strain PNUSAS389186 SAMN37690845-rid19628653.denovo.18, whole genome shotgun sequence	22546..22807		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNMPC010000020.1 Salmonella enterica strain PNUSAS389186 SAMN37690845-rid19628653.denovo.20, whole genome shotgun sequence	70215..70356																																		avrA	ABNMPC010000003.1	174651..175519	100	869	0						
GCA_032453095.1_PDT001917450.1_genomic.fna	Salmonella_enterica	0.5218	347.445 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMPU010000004.1 Salmonella enterica strain PNUSAS389199 SAMN37691469-rid19628883.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNMPU010000035.1 Salmonella enterica strain PNUSAS389199 SAMN37691469-rid19628883.guided.27, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNMPU010000015.1 Salmonella enterica strain PNUSAS389199 SAMN37691469-rid19628883.denovo.15, whole genome shotgun sequence	48426..49068	enterobacteriales	IncFII(S)	100	262 / 262	ABNMPU010000015.1 Salmonella enterica strain PNUSAS389199 SAMN37691469-rid19628883.denovo.15, whole genome shotgun sequence	64153..64414																																																avrA	ABNMPU010000001.1	446725..447593	100	869	0						
GCA_032453115.1_PDT001917449.1_genomic.fna	Salmonella_enterica	0.5223	505.19 KB	3	aroC_81,dnaN_283,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	909	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col156,ColpVC	aroC	100	100	aroC_81	dnaN	100	100	dnaN_283	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMPS010000001.1 Salmonella enterica strain PNUSAS389204 SAMN37691474-rid19628873.denovo.01, whole genome shotgun sequence	636325..636762	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMPS010000024.1 Salmonella enterica strain PNUSAS389204 SAMN37691474-rid19628873.guided.18, whole genome shotgun sequence	730..1167	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	ABNMPS010000015.1 Salmonella enterica strain PNUSAS389204 SAMN37691474-rid19628873.denovo.17, whole genome shotgun sequence	792..945	enterobacteriales	ColpVC	96.89	193 / 193	ABNMPS010000016.1 Salmonella enterica strain PNUSAS389204 SAMN37691474-rid19628873.denovo.19, whole genome shotgun sequence	1524..1716																																																avrA	ABNMPS010000002.1	606117..606986	99.31	870	0						
GCA_032453135.1_PDT001917446.1_genomic.fna	Salmonella_enterica	0.522	501.16 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNMPQ010000001.1 Salmonella enterica strain PNUSAS389201 SAMN37691470-rid19628843.denovo.01, whole genome shotgun sequence	387079..387516	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMPQ010000018.1 Salmonella enterica strain PNUSAS389201 SAMN37691470-rid19628843.denovo.22, whole genome shotgun sequence	548..1384	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMPQ010000018.1 Salmonella enterica strain PNUSAS389201 SAMN37691470-rid19628843.denovo.22, whole genome shotgun sequence	1384..2187	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	ABNMPQ010000035.1 Salmonella enterica strain PNUSAS389201 SAMN37691470-rid19628843.guided.19, whole genome shotgun sequence	3920..4357	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMPQ010000037.1 Salmonella enterica strain PNUSAS389201 SAMN37691470-rid19628843.guided.21, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMPQ010000037.1 Salmonella enterica strain PNUSAS389201 SAMN37691470-rid19628843.guided.21, whole genome shotgun sequence	5879..6682	Streptomycin	AF321551	blaTEM-1A	100	861/861	ABNMPQ010000018.1 Salmonella enterica strain PNUSAS389201 SAMN37691470-rid19628843.denovo.22, whole genome shotgun sequence	3225..4085	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNMPQ010000037.1 Salmonella enterica strain PNUSAS389201 SAMN37691470-rid19628843.guided.21, whole genome shotgun sequence	3981..4841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	ABNMPQ010000016.1 Salmonella enterica strain PNUSAS389201 SAMN37691470-rid19628843.denovo.17, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNMPQ010000038.1 Salmonella enterica strain PNUSAS389201 SAMN37691470-rid19628843.guided.24, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNMPQ010000018.1 Salmonella enterica strain PNUSAS389201 SAMN37691470-rid19628843.denovo.22, whole genome shotgun sequence	2248..3063	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNMPQ010000037.1 Salmonella enterica strain PNUSAS389201 SAMN37691470-rid19628843.guided.21, whole genome shotgun sequence	5003..5818	Sulfamethoxazole	AY034138	tet(A)	100	1226/1275	ABNMPQ010000023.1 Salmonella enterica strain PNUSAS389201 SAMN37691470-rid19628843.denovo.30, whole genome shotgun sequence	692..1917	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	ABNMPQ010000039.1 Salmonella enterica strain PNUSAS389201 SAMN37691470-rid19628843.guided.26, whole genome shotgun sequence	788..1987	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABNMPQ010000040.1 Salmonella enterica strain PNUSAS389201 SAMN37691470-rid19628843.guided.29, whole genome shotgun sequence	713..1987	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNMPQ010000016.1 Salmonella enterica strain PNUSAS389201 SAMN37691470-rid19628843.denovo.17, whole genome shotgun sequence	11449..11699																																																						avrA	ABNMPQ010000002.1	130389..131258	99.54	870	0						
GCA_032453155.1_PDT001917443.1_genomic.fna	Salmonella_enterica	0.5207	639.829 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNMPN010000001.1 Salmonella enterica strain PNUSAS389191 SAMN37691462-rid19628813.denovo.01, whole genome shotgun sequence	596407..596844	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNMPN010000023.1 Salmonella enterica strain PNUSAS389191 SAMN37691462-rid19628813.guided.17, whole genome shotgun sequence	5089..5526	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNMPN010000010.1 Salmonella enterica strain PNUSAS389191 SAMN37691462-rid19628813.denovo.10, whole genome shotgun sequence	73463..73604																																																						avrA	ABNMPN010000003.1	544608..545476	99.425	870	0						
GCA_032453175.1_PDT001917442.1_genomic.fna	Salmonella_enterica	0.5206	673.541 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMPT010000001.1 Salmonella enterica strain PNUSAS389197 SAMN37691464-rid19628803.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMPT010000020.1 Salmonella enterica strain PNUSAS389197 SAMN37691464-rid19628803.guided.15, whole genome shotgun sequence	6489..6926	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032453195.1_PDT001917438.1_genomic.fna	Salmonella_enterica	0.5219	275.099 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMPR010000001.1 Salmonella enterica strain PNUSAS389080 SAMN37690965-rid19628763.denovo.01, whole genome shotgun sequence	233303..233740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNMPR010000044.1 Salmonella enterica strain PNUSAS389080 SAMN37690965-rid19628763.guided.28, whole genome shotgun sequence	30260..30697	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMPR010000003.1	208057..208925	99.77	870	0						
GCA_032453215.1_PDT001917429.1_genomic.fna	Salmonella_enterica	0.521	406.094 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMPP010000001.1 Salmonella enterica strain PNUSAS389188 SAMN37690844-rid19628683.denovo.01, whole genome shotgun sequence	293258..293695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMPP010000028.1 Salmonella enterica strain PNUSAS389188 SAMN37690844-rid19628683.guided.21, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMPP010000016.1 Salmonella enterica strain PNUSAS389188 SAMN37690844-rid19628683.denovo.16, whole genome shotgun sequence	48482..49124	enterobacteriales	IncFII(S)	100	262 / 262	ABNMPP010000016.1 Salmonella enterica strain PNUSAS389188 SAMN37690844-rid19628683.denovo.16, whole genome shotgun sequence	4229..4490																																																avrA	ABNMPP010000002.1	583743..584612	99.54	870	0						
GCA_032453295.1_PDT001819965.1_genomic.fna	Salmonella_enterica	0.519	130.518 KB	12	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMPY010000016.1 Salmonella enterica strain 23CT06CG01-S1 SAMN36502837-rid18807143.denovo.16, whole genome shotgun sequence	75501..75938	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMPY010000096.1 Salmonella enterica strain 23CT06CG01-S1 SAMN36502837-rid18807143.guided.35, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNMPY010000068.1 Salmonella enterica strain 23CT06CG01-S1 SAMN36502837-rid18807143.denovo.71, whole genome shotgun sequence	763..893	enterobacteriales	IncHI2A	99.52	630 / 630	ABNMPY010000046.1 Salmonella enterica strain 23CT06CG01-S1 SAMN36502837-rid18807143.denovo.49, whole genome shotgun sequence	5615..6244		enterobacteriales	IncX1	100	373 / 373	ABNMPY010000048.1 Salmonella enterica strain 23CT06CG01-S1 SAMN36502837-rid18807143.denovo.51, whole genome shotgun sequence	2153..2525																																									avrA	ABNMPY010000018.1	102495..103364	99.655	870	0						
GCA_032453375.1_PDT001819963.1_genomic.fna	Salmonella_enterica	0.521	194.508 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMPZ010000001.1 Salmonella enterica strain 23CT06CH01-S1 SAMN36502841-rid18807123.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMPZ010000027.1 Salmonella enterica strain 23CT06CH01-S1 SAMN36502841-rid18807123.denovo.29, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMPZ010000027.1 Salmonella enterica strain 23CT06CH01-S1 SAMN36502841-rid18807123.denovo.29, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNMPZ010000053.1 Salmonella enterica strain 23CT06CH01-S1 SAMN36502841-rid18807123.guided.18, whole genome shotgun sequence	10423..10860	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMPZ010000057.1 Salmonella enterica strain 23CT06CH01-S1 SAMN36502841-rid18807123.guided.43, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMPZ010000057.1 Salmonella enterica strain 23CT06CH01-S1 SAMN36502841-rid18807123.guided.43, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNMPZ010000027.1 Salmonella enterica strain 23CT06CH01-S1 SAMN36502841-rid18807123.denovo.29, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNMPZ010000057.1 Salmonella enterica strain 23CT06CH01-S1 SAMN36502841-rid18807123.guided.43, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNMPZ010000027.1 Salmonella enterica strain 23CT06CH01-S1 SAMN36502841-rid18807123.denovo.29, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNMPZ010000055.1 Salmonella enterica strain 23CT06CH01-S1 SAMN36502841-rid18807123.guided.35, whole genome shotgun sequence	7910..9109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNMPZ010000035.1 Salmonella enterica strain 23CT06CH01-S1 SAMN36502841-rid18807123.denovo.39, whole genome shotgun sequence	9109..9668																																																						avrA	ABNMPZ010000005.1	39430..40299	99.655	870	0						
GCA_032453395.1_PDT001819959.1_genomic.fna	Salmonella_enterica	0.5204	240.364 KB	6	aroC_92,dnaN_125,hemD_78,hisD_128,purE_138,sucA_9,thrA_141	463	3,10:e,h:l,w	3	aac(6')-Iaa,aac(2')-IIa,aac(2')-IIa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_92	dnaN	100	100	dnaN_125	hemD	100	100	hemD_78	hisD	100	100	hisD_128	purE	100	100	purE_138	sucA	100	100	sucA_9	thrA	100	100	thrA_141	3,10	e,h	l,w	Salmonella enterica subspecies enterica (subspecies I)	Meleagridis		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNMQA010000002.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12323427 SAMN36502247-rid18807083.denovo.02, whole genome shotgun sequence	314725..315162	Amikacin, Tobramycin	NC_003197	aac(2')-IIa	98.72	783/783	ABNMQA010000014.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12323427 SAMN36502247-rid18807083.denovo.14, whole genome shotgun sequence	21080..21862	Kasugamycin	AB669090	aac(2')-IIa	98.72	783/783	ABNMQA010000040.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12323427 SAMN36502247-rid18807083.guided.26, whole genome shotgun sequence	561..1343	Kasugamycin	AB669090	aac(6')-Iaa	98.86	438/438	ABNMQA010000041.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12323427 SAMN36502247-rid18807083.guided.27, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNMQA010000004.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12323427 SAMN36502247-rid18807083.denovo.04, whole genome shotgun sequence	158255..158677	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNMQA010000039.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12323427 SAMN36502247-rid18807083.guided.25, whole genome shotgun sequence	21554..21976	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMQA010000003.1	125268..126137	98.851	870	0						
GCA_032453415.1_PDT001819948.1_genomic.fna	Salmonella_enterica	0.519	234.263 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMQE010000001.1 Salmonella enterica strain 23CT06GT02-S1 SAMN36502838-rid18806983.denovo.01, whole genome shotgun sequence	486111..486548	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMQE010000042.1 Salmonella enterica strain 23CT06GT02-S1 SAMN36502838-rid18806983.guided.28, whole genome shotgun sequence	757..1194	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNMQE010000009.1 Salmonella enterica strain 23CT06GT02-S1 SAMN36502838-rid18806983.denovo.09, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNMQE010000043.1 Salmonella enterica strain 23CT06GT02-S1 SAMN36502838-rid18806983.guided.29, whole genome shotgun sequence	15705..16127	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMQE010000002.1	169368..170237	99.195	870	0						
GCA_032453535.1_PDT001819936.1_genomic.fna	Salmonella_enterica	0.5211	222.523 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aadA2,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aadA2,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B),dfrA14,dfrA12,dfrA12,dfrA12,dfrA14,dfrA12,dfrA12,dfrA12	0		3	Col(pHAD28),Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMQK010000001.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.denovo.01, whole genome shotgun sequence	482682..483119	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMQK010000036.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.denovo.38, whole genome shotgun sequence	4585..5421	Streptomycin	M28829	aph(3'')-Ib	100	505/804	ABNMQK010000036.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.denovo.38, whole genome shotgun sequence	6264..6768	Streptomycin	AF321551	aph(3'')-Ib	99.2957746478873	284/804	ABNMQK010000036.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.denovo.38, whole genome shotgun sequence	5421..5702	Streptomycin	AF321551	aadA2	100	792/792	ABNMQK010000050.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.denovo.57, whole genome shotgun sequence	124..915	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	837/837	ABNMQK010000073.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.guided.37, whole genome shotgun sequence	5934..6770	Streptomycin	M28829	aph(3'')-Ib	100	529/804	ABNMQK010000073.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.guided.37, whole genome shotgun sequence	4563..5091	Streptomycin	AF321551	aph(3'')-Ib	99.2957746478873	284/804	ABNMQK010000073.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.guided.37, whole genome shotgun sequence	5653..5934	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNMQK010000076.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.guided.50, whole genome shotgun sequence	1546..1983	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNMQK010000078.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.guided.56, whole genome shotgun sequence	874..1665	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABNMQK010000040.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.denovo.44, whole genome shotgun sequence	33..893	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNMQK010000075.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.guided.43, whole genome shotgun sequence	3315..4175	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNMQK010000036.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.denovo.38, whole genome shotgun sequence	85..900	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNMQK010000073.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.guided.37, whole genome shotgun sequence	3687..4502	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNMQK010000032.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.denovo.33, whole genome shotgun sequence	12337..13542	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNMQK010000077.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.guided.54, whole genome shotgun sequence	796..2001	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNMQK010000036.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.denovo.38, whole genome shotgun sequence	5771..6244	Trimethoprim	AF393510	dfrA12	100	425/498	ABNMQK010000050.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.denovo.57, whole genome shotgun sequence	1323..1747	Trimethoprim	AM040708	dfrA12	100	425/498	ABNMQK010000050.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.denovo.57, whole genome shotgun sequence	1323..1747	Trimethoprim	FR875302	dfrA12	100	425/498	ABNMQK010000050.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.denovo.57, whole genome shotgun sequence	1323..1747	Trimethoprim	EU650399	dfrA14	100	474/474	ABNMQK010000073.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.guided.37, whole genome shotgun sequence	5111..5584	Trimethoprim	AF393510	dfrA12	100	429/498	ABNMQK010000078.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.guided.56, whole genome shotgun sequence	38..466	Trimethoprim	AM040708	dfrA12	100	429/498	ABNMQK010000078.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.guided.56, whole genome shotgun sequence	38..466	Trimethoprim	FR875302	dfrA12	100	429/498	ABNMQK010000078.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.guided.56, whole genome shotgun sequence	38..466	Trimethoprim	EU650399																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNMQK010000036.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.denovo.38, whole genome shotgun sequence	1427..1557	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNMQK010000073.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.guided.37, whole genome shotgun sequence	3030..3160		enterobacteriales	IncFIB(S)	100	643 / 643	ABNMQK010000026.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.denovo.26, whole genome shotgun sequence	16028..16670		enterobacteriales	IncFII(S)	100	262 / 262	ABNMQK010000026.1 Salmonella enterica strain PNUSAS363533 SAMN36499511-rid18806903.denovo.26, whole genome shotgun sequence	31754..32015																																		avrA	ABNMQK010000004.1	143228..144097	99.885	870	0						
GCA_032453615.1_PDT001819932.1_genomic.fna	Salmonella_enterica	0.5221	333.068 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNMQP010000012.1 Salmonella enterica strain PNUSAS363527 SAMN36499517-rid18806873.denovo.12, whole genome shotgun sequence	70822..71259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNMQP010000031.1 Salmonella enterica strain PNUSAS363527 SAMN36499517-rid18806873.guided.26, whole genome shotgun sequence	1061..1498	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMQP010000005.1	131917..132786	98.966	870	0						
GCA_032453635.1_PDT001819929.1_genomic.fna	Salmonella_enterica	0.5223	684.717 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pMET)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNMQQ010000001.1 Salmonella enterica strain PNUSAS363530 SAMN36499514-rid18806533.denovo.01, whole genome shotgun sequence	995380..995817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNMQQ010000023.1 Salmonella enterica strain PNUSAS363530 SAMN36499514-rid18806533.guided.18, whole genome shotgun sequence	184..621	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pMET)	98.27	577 / 577	ABNMQQ010000015.1 Salmonella enterica strain PNUSAS363530 SAMN36499514-rid18806533.denovo.16, whole genome shotgun sequence	28348..28924																																																						avrA	ABNMQQ010000003.1	543741..544610	99.54	870	0						
GCA_032453675.1_PDT001819928.1_genomic.fna	Salmonella_enterica	0.522	738.572 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15!,purE_15!,sucA_12,thrA_12	Unknown	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15!	purE	100	100	purE_15!	sucA	100	100	sucA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNMQS010000001.1 Salmonella enterica strain PNUSAS363535 SAMN36499520-rid18806843.denovo.01, whole genome shotgun sequence	644881..645318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNMQS010000017.1 Salmonella enterica strain PNUSAS363535 SAMN36499520-rid18806843.guided.08, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMQS010000002.1	562269..563137	99.655	870	0						
GCA_032453715.1_PDT001819921.1_genomic.fna	Salmonella_enterica	0.5218	496.544 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMQX010000001.1 Salmonella enterica strain PNUSAS363529 SAMN36499515-rid18806793.denovo.01, whole genome shotgun sequence	831976..832413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNMQX010000025.1 Salmonella enterica strain PNUSAS363529 SAMN36499515-rid18806793.guided.11, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMQX010000002.1	157592..158461	98.966	870	0						
GCA_032453735.1_PDT001819923.1_genomic.fna	Salmonella_enterica	0.521	489.854 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMQR010000001.1 Salmonella enterica strain PNUSAS363532 SAMN36499512-rid18806813.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMQR010000028.1 Salmonella enterica strain PNUSAS363532 SAMN36499512-rid18806813.guided.15, whole genome shotgun sequence	26653..27090	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMQR010000012.1 Salmonella enterica strain PNUSAS363532 SAMN36499512-rid18806813.denovo.13, whole genome shotgun sequence	40542..41184	enterobacteriales	IncFII(S)	100	262 / 262	ABNMQR010000016.1 Salmonella enterica strain PNUSAS363532 SAMN36499512-rid18806813.denovo.19, whole genome shotgun sequence	3401..3662																																																avrA	ABNMQR010000002.1	505310..506179	99.54	870	0						
GCA_032453935.1_PDT001819913.1_genomic.fna	Salmonella_enterica	0.5225	755.497 KB	2	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aac(6')-Iaa,floR,floR,qnrS1,qnrS1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNMRE010000001.1 Salmonella enterica strain PNUSAS363536 SAMN36499497-rid18806753.denovo.01, whole genome shotgun sequence	1374393..1374830	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNMRE010000027.1 Salmonella enterica strain PNUSAS363536 SAMN36499497-rid18806753.guided.17, whole genome shotgun sequence	2322..2759	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	ABNMRE010000013.1 Salmonella enterica strain PNUSAS363536 SAMN36499497-rid18806753.denovo.15, whole genome shotgun sequence	6664..7877	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNMRE010000029.1 Salmonella enterica strain PNUSAS363536 SAMN36499497-rid18806753.guided.19, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNMRE010000006.1 Salmonella enterica strain PNUSAS363536 SAMN36499497-rid18806753.denovo.06, whole genome shotgun sequence	333943..334599	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNMRE010000024.1 Salmonella enterica strain PNUSAS363536 SAMN36499497-rid18806753.guided.12, whole genome shotgun sequence	42518..43174	Ciprofloxacin	AB187515	sul1	100	840/840	ABNMRE010000013.1 Salmonella enterica strain PNUSAS363536 SAMN36499497-rid18806753.denovo.15, whole genome shotgun sequence	1274..2113	Sulfamethoxazole	U12338	sul1	100	840/840	ABNMRE010000028.1 Salmonella enterica strain PNUSAS363536 SAMN36499497-rid18806753.guided.18, whole genome shotgun sequence	991..1830	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNMRE010000013.1 Salmonella enterica strain PNUSAS363536 SAMN36499497-rid18806753.denovo.15, whole genome shotgun sequence	4789..6063	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNMRE010000028.1 Salmonella enterica strain PNUSAS363536 SAMN36499497-rid18806753.guided.18, whole genome shotgun sequence	4506..5780	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNMRE010000013.1 Salmonella enterica strain PNUSAS363536 SAMN36499497-rid18806753.denovo.15, whole genome shotgun sequence	3158..3631	Trimethoprim	X00926	dfrA1	100	474/474	ABNMRE010000028.1 Salmonella enterica strain PNUSAS363536 SAMN36499497-rid18806753.guided.18, whole genome shotgun sequence	2875..3348	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMRE010000003.1	130917..131785	99.655	869	0						
GCA_032453995.1_PDT001819912.1_genomic.fna	Salmonella_enterica	0.5223	343.827 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncN2	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMRI010000001.1 Salmonella enterica strain PNUSAS363540 SAMN36499488-rid18806463.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMRI010000042.1 Salmonella enterica strain PNUSAS363540 SAMN36499488-rid18806463.guided.31, whole genome shotgun sequence	2529..2966	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncN2	98.74	477 / 477	ABNMRI010000021.1 Salmonella enterica strain PNUSAS363540 SAMN36499488-rid18806463.denovo.21, whole genome shotgun sequence	24488..24964																																																																	
GCA_032454075.1_PDT001819909.1_genomic.fna	Salmonella_enterica	0.521	684.043 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(p14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNMRK010000001.1 Salmonella enterica strain PNUSAS363537 SAMN36499494-rid18806443.denovo.01, whole genome shotgun sequence	538128..538565	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNMRK010000023.1 Salmonella enterica strain PNUSAS363537 SAMN36499494-rid18806443.guided.16, whole genome shotgun sequence	15886..16323	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNMRK010000010.1 Salmonella enterica strain PNUSAS363537 SAMN36499494-rid18806443.denovo.10, whole genome shotgun sequence	17040..17682	enterobacteriales	IncFII(p14)	92.02	263 / 262	ABNMRK010000010.1 Salmonella enterica strain PNUSAS363537 SAMN36499494-rid18806443.denovo.10, whole genome shotgun sequence	33612..33870																																																avrA	ABNMRK010000003.1	498942..499810	99.425	870	0						
GCA_032455095.1_PDT001819543.1_genomic.fna	Salmonella_enterica	0.52	475.187 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI2,IncX4	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNMSU010000001.1 Salmonella enterica strain PNUSAS363481 SAMN36496388-rid18806073.denovo.01, whole genome shotgun sequence	140078..140515	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNMSU010000031.1 Salmonella enterica strain PNUSAS363481 SAMN36496388-rid18806073.guided.22, whole genome shotgun sequence	14369..14806	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2	100	324 / 324	ABNMSU010000015.1 Salmonella enterica strain PNUSAS363481 SAMN36496388-rid18806073.denovo.15, whole genome shotgun sequence	25909..26232	enterobacteriales	IncX4	100	374 / 374	ABNMSU010000018.1 Salmonella enterica strain PNUSAS363481 SAMN36496388-rid18806073.denovo.18, whole genome shotgun sequence	7852..8225																																																avrA	ABNMSU010000002.1	553473..554342	99.77	870	0						
GCA_032455115.1_PDT001819540.1_genomic.fna	Salmonella_enterica	0.5212	257.764 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMSX010000001.1 Salmonella enterica strain PNUSAS363484 SAMN36496389-rid18806043.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMSX010000037.1 Salmonella enterica strain PNUSAS363484 SAMN36496389-rid18806043.guided.31, whole genome shotgun sequence	2514..2951	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNMSX010000030.1 Salmonella enterica strain PNUSAS363484 SAMN36496389-rid18806043.denovo.34, whole genome shotgun sequence	468..598	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMSX010000026.1 Salmonella enterica strain PNUSAS363484 SAMN36496389-rid18806043.denovo.28, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABNMSX010000027.1 Salmonella enterica strain PNUSAS363484 SAMN36496389-rid18806043.denovo.29, whole genome shotgun sequence	3402..3663																																									avrA	ABNMSX010000008.1	175196..176065	99.54	870	0						
GCA_032455135.1_PDT001819539.1_genomic.fna	Salmonella_enterica	0.5215	369.968 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMSW010000001.1 Salmonella enterica strain PNUSAS363451 SAMN36496382-rid18805333.denovo.01, whole genome shotgun sequence	560694..561131	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMSW010000032.1 Salmonella enterica strain PNUSAS363451 SAMN36496382-rid18805333.guided.22, whole genome shotgun sequence	9678..10115	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMSW010000010.1	140181..141049	99.195	870	0						
GCA_032455155.1_PDT001819538.1_genomic.fna	Salmonella_enterica	0.5217	337.06 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNMSY010000001.1 Salmonella enterica strain PNUSAS363486 SAMN36496363-rid18806033.denovo.01, whole genome shotgun sequence	811032..811469	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNMSY010000029.1 Salmonella enterica strain PNUSAS363486 SAMN36496363-rid18806033.guided.26, whole genome shotgun sequence	2627..3064	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABNMSY010000022.1 Salmonella enterica strain PNUSAS363486 SAMN36496363-rid18806033.denovo.22, whole genome shotgun sequence	10725..10986																																																						avrA	ABNMSY010000004.1	94222..95091	98.966	870	0						
GCA_032455195.1_PDT001819534.1_genomic.fna	Salmonella_enterica	0.5222	672.264 KB	3	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMTB010000002.1 Salmonella enterica strain PNUSAS363472 SAMN36496371-rid18805313.denovo.02, whole genome shotgun sequence	624551..624988	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMTB010000026.1 Salmonella enterica strain PNUSAS363472 SAMN36496371-rid18805313.guided.20, whole genome shotgun sequence	7384..7821	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032455215.1_PDT001819536.1_genomic.fna	Salmonella_enterica	0.5215	330.882 KB	6	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_690	3492	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_690	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMTA010000001.1 Salmonella enterica strain PNUSAS363452 SAMN36496386-rid18806023.denovo.01, whole genome shotgun sequence	177159..177596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMTA010000027.1 Salmonella enterica strain PNUSAS363452 SAMN36496386-rid18806023.guided.16, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	92.03	251 / 251	ABNMTA010000018.1 Salmonella enterica strain PNUSAS363452 SAMN36496386-rid18806023.denovo.19, whole genome shotgun sequence	7084..7334																																																						avrA	ABNMTA010000007.1	148153..149022	99.77	870	0						
GCA_032455255.1_PDT001819527.1_genomic.fna	Salmonella_enterica	0.5213	406.177 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	4	Col440I,ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMTF010000001.1 Salmonella enterica strain PNUSAS363485 SAMN36496368-rid18805293.denovo.01, whole genome shotgun sequence	583366..583803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMTF010000028.1 Salmonella enterica strain PNUSAS363485 SAMN36496368-rid18805293.guided.21, whole genome shotgun sequence	106..543	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col440I	93.86	114 / 114	ABNMTF010000024.1 Salmonella enterica strain PNUSAS363485 SAMN36496368-rid18805293.denovo.27, whole genome shotgun sequence	2734..2847	enterobacteriales	ColRNAI	90.08	131 / 130	ABNMTF010000023.1 Salmonella enterica strain PNUSAS363485 SAMN36496368-rid18805293.denovo.26, whole genome shotgun sequence	810..940		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMTF010000020.1 Salmonella enterica strain PNUSAS363485 SAMN36496368-rid18805293.denovo.20, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABNMTF010000021.1 Salmonella enterica strain PNUSAS363485 SAMN36496368-rid18805293.denovo.22, whole genome shotgun sequence	3407..3668																																		avrA	ABNMTF010000002.1	553058..553927	99.54	870	0						
GCA_032455295.1_PDT001819529.1_genomic.fna	Salmonella_enterica	0.5211	406.081 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMTD010000001.1 Salmonella enterica strain PNUSAS363449 SAMN36496380-rid18805303.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMTD010000029.1 Salmonella enterica strain PNUSAS363449 SAMN36496380-rid18805303.guided.17, whole genome shotgun sequence	5125..5562	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMTD010000017.1 Salmonella enterica strain PNUSAS363449 SAMN36496380-rid18805303.denovo.18, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNMTD010000021.1 Salmonella enterica strain PNUSAS363449 SAMN36496380-rid18805303.denovo.23, whole genome shotgun sequence	3392..3653																																																avrA	ABNMTD010000002.1	553076..553945	99.54	870	0						
GCA_032455315.1_PDT001819526.1_genomic.fna	Salmonella_enterica	0.5219	200.149 KB	8	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col(pHAD28)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNMTG010000002.1 Salmonella enterica strain PNUSAS363471 SAMN36496370-rid18805953.denovo.02, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNMTG010000043.1 Salmonella enterica strain PNUSAS363471 SAMN36496370-rid18805953.guided.37, whole genome shotgun sequence	2337..2774	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNMTG010000036.1 Salmonella enterica strain PNUSAS363471 SAMN36496370-rid18805953.denovo.39, whole genome shotgun sequence	198..326																																																						avrA	ABNMTG010000004.1	98810..99679	99.77	870	0						
GCA_032455335.1_PDT001819528.1_genomic.fna	Salmonella_enterica	0.5215	342.031 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_690	3492	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_690	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMTE010000002.1 Salmonella enterica strain PNUSAS363450 SAMN36496384-rid18805963.denovo.02, whole genome shotgun sequence	177345..177782	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMTE010000032.1 Salmonella enterica strain PNUSAS363450 SAMN36496384-rid18805963.guided.19, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMTE010000001.1	563786..564655	99.77	870	0						
GCA_032455355.1_PDT001819525.1_genomic.fna	Salmonella_enterica	0.5214	337.475 KB	5	aroC_13,dnaN_127,hemD_506,hisD_113,purE_114,sucA_107,thrA_4	3095	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_506	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMTI010000001.1 Salmonella enterica strain PNUSAS363474 SAMN36496359-rid18805283.denovo.01, whole genome shotgun sequence	498131..498568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMTI010000038.1 Salmonella enterica strain PNUSAS363474 SAMN36496359-rid18805283.guided.28, whole genome shotgun sequence	8011..8448	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMTI010000002.1	94265..95134	99.425	870	0						
GCA_032455375.1_PDT001819523.1_genomic.fna	Salmonella_enterica	0.5215	257.839 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMTJ010000001.1 Salmonella enterica strain PNUSAS363482 SAMN36496357-rid18805943.denovo.01, whole genome shotgun sequence	68378..68815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNMTJ010000050.1 Salmonella enterica strain PNUSAS363482 SAMN36496357-rid18805943.guided.38, whole genome shotgun sequence	10072..10509	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNMTJ010000019.1 Salmonella enterica strain PNUSAS363482 SAMN36496357-rid18805943.denovo.19, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNMTJ010000019.1 Salmonella enterica strain PNUSAS363482 SAMN36496357-rid18805943.denovo.19, whole genome shotgun sequence	30407..30668																																																avrA	ABNMTJ010000002.1	209624..210492	100	869	0						
GCA_032455395.1_PDT001819522.1_genomic.fna	Salmonella_enterica	0.5202	335.67 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMTK010000001.1 Salmonella enterica strain PNUSAS363479 SAMN36496361-rid18805933.denovo.01, whole genome shotgun sequence	830214..830651	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMTK010000027.1 Salmonella enterica strain PNUSAS363479 SAMN36496361-rid18805933.guided.22, whole genome shotgun sequence	3495..3932	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNMTK010000023.1 Salmonella enterica strain PNUSAS363479 SAMN36496361-rid18805933.denovo.26, whole genome shotgun sequence	1905..2035																																																						avrA	ABNMTK010000004.1	162728..163597	98.966	870	0						
GCA_032455415.1_PDT001819521.1_genomic.fna	Salmonella_enterica	0.5214	478.496 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMTM010000001.1 Salmonella enterica strain PNUSAS363477 SAMN36496369-rid18805923.denovo.01, whole genome shotgun sequence	774368..774805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMTM010000022.1 Salmonella enterica strain PNUSAS363477 SAMN36496369-rid18805923.guided.17, whole genome shotgun sequence	19900..20337	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNMTM010000018.1 Salmonella enterica strain PNUSAS363477 SAMN36496369-rid18805923.denovo.21, whole genome shotgun sequence	547..675	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMTM010000013.1 Salmonella enterica strain PNUSAS363477 SAMN36496369-rid18805923.denovo.13, whole genome shotgun sequence	49285..49927		enterobacteriales	IncFII(S)	100	262 / 262	ABNMTM010000013.1 Salmonella enterica strain PNUSAS363477 SAMN36496369-rid18805923.denovo.13, whole genome shotgun sequence	5032..5293																																									avrA	ABNMTM010000002.1	553648..554517	99.54	870	0						
GCA_032455435.1_PDT001819520.1_genomic.fna	Salmonella_enterica	0.5212	337.214 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncY	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMTO010000001.1 Salmonella enterica strain PNUSAS363476 SAMN36496366-rid18805913.denovo.01, whole genome shotgun sequence	830032..830469	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMTO010000034.1 Salmonella enterica strain PNUSAS363476 SAMN36496366-rid18805913.guided.22, whole genome shotgun sequence	13044..13481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNMTO010000024.1 Salmonella enterica strain PNUSAS363476 SAMN36496366-rid18805913.denovo.27, whole genome shotgun sequence	547..675	enterobacteriales	IncY	98.69	765 / 765	ABNMTO010000015.1 Salmonella enterica strain PNUSAS363476 SAMN36496366-rid18805913.denovo.15, whole genome shotgun sequence	64863..65627																																																avrA	ABNMTO010000002.1	551329..552198	99.195	870	0						
GCA_032455915.1_PDT001917448.1_genomic.fna	Salmonella_enterica	0.5197	498.644 KB	4	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440II,IncFII(p96A)	aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMUH010000001.1 Salmonella enterica strain PNUSAS389193 SAMN37691465-rid19628863.denovo.01, whole genome shotgun sequence	804026..804463	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMUH010000023.1 Salmonella enterica strain PNUSAS389193 SAMN37691465-rid19628863.guided.18, whole genome shotgun sequence	11107..11544	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440II	97.16	282 / 282	ABNMUH010000017.1 Salmonella enterica strain PNUSAS389193 SAMN37691465-rid19628863.denovo.20, whole genome shotgun sequence	5136..5417	enterobacteriales	IncFII(p96A)	99.06	534 / 534	ABNMUH010000015.1 Salmonella enterica strain PNUSAS389193 SAMN37691465-rid19628863.denovo.15, whole genome shotgun sequence	557..1090																																																avrA	ABNMUH010000003.1	563146..564015	99.54	870	0						
GCA_032455955.1_PDT001917445.1_genomic.fna	Salmonella_enterica	0.5213	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMUJ010000001.1 Salmonella enterica strain PNUSAS389192 SAMN37691466-rid19628833.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMUJ010000025.1 Salmonella enterica strain PNUSAS389192 SAMN37691466-rid19628833.guided.18, whole genome shotgun sequence	20612..21049	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMUJ010000015.1 Salmonella enterica strain PNUSAS389192 SAMN37691466-rid19628833.denovo.15, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABNMUJ010000018.1 Salmonella enterica strain PNUSAS389192 SAMN37691466-rid19628833.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABNMUJ010000002.1	553635..554504	99.54	870	0						
GCA_032455975.1_PDT001917441.1_genomic.fna	Salmonella_enterica	0.5207	386.287 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMUI010000001.1 Salmonella enterica strain PNUSAS389196 SAMN37691476-rid19628793.denovo.01, whole genome shotgun sequence	414575..415012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMUI010000023.1 Salmonella enterica strain PNUSAS389196 SAMN37691476-rid19628793.guided.17, whole genome shotgun sequence	2782..3219	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032456255.1_PDT001818894.1_genomic.fna	Salmonella_enterica	0.5224	223.947 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMUZ010000007.1 Salmonella enterica strain PNUSAS363470 SAMN36496245-rid18804853.denovo.07, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNMUZ010000062.1 Salmonella enterica strain PNUSAS363470 SAMN36496245-rid18804853.guided.40, whole genome shotgun sequence	8929..9366	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNMUZ010000037.1 Salmonella enterica strain PNUSAS363470 SAMN36496245-rid18804853.denovo.37, whole genome shotgun sequence	6833..7475	enterobacteriales	IncFII(S)	100	262 / 262	ABNMUZ010000040.1 Salmonella enterica strain PNUSAS363470 SAMN36496245-rid18804853.denovo.43, whole genome shotgun sequence	4386..4647																																																avrA	ABNMUZ010000002.1	446731..447599	100	869	0						
GCA_032456315.1_PDT001818892.1_genomic.fna	Salmonella_enterica	0.5205	263.471 KB	6	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNMVA010000001.1 Salmonella enterica strain PNUSAS363469 SAMN36496244-rid18804833.denovo.01, whole genome shotgun sequence	346944..347381	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNMVA010000039.1 Salmonella enterica strain PNUSAS363469 SAMN36496244-rid18804833.guided.25, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMVA010000010.1	39894..40763	99.54	870	0						
GCA_032456395.1_PDT001818885.1_genomic.fna	Salmonella_enterica	0.5224	379.288 KB	5	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNMVE010000002.1 Salmonella enterica strain PNUSAS363420 SAMN36496188-rid18803163.denovo.02, whole genome shotgun sequence	378504..378941	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNMVE010000041.1 Salmonella enterica strain PNUSAS363420 SAMN36496188-rid18803163.guided.24, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMVE010000010.1	145454..146323	99.425	870	0						
GCA_032456415.1_PDT001818881.1_genomic.fna	Salmonella_enterica	0.5204	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMVI010000001.1 Salmonella enterica strain PNUSAS363426 SAMN36496200-rid18804743.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMVI010000024.1 Salmonella enterica strain PNUSAS363426 SAMN36496200-rid18804743.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMVI010000012.1 Salmonella enterica strain PNUSAS363426 SAMN36496200-rid18804743.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNMVI010000017.1 Salmonella enterica strain PNUSAS363426 SAMN36496200-rid18804743.denovo.20, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	94.65	374 / 374	ABNMVI010000013.1 Salmonella enterica strain PNUSAS363426 SAMN36496200-rid18804743.denovo.15, whole genome shotgun sequence	30138..30511																																									avrA	ABNMVI010000002.1	553636..554505	99.54	870	0						
GCA_032456435.1_PDT001818882.1_genomic.fna	Salmonella_enterica	0.5212	490.157 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMVF010000001.1 Salmonella enterica strain PNUSAS363427 SAMN36496184-rid18804753.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMVF010000021.1 Salmonella enterica strain PNUSAS363427 SAMN36496184-rid18804753.guided.11, whole genome shotgun sequence	34165..34602	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMVF010000012.1 Salmonella enterica strain PNUSAS363427 SAMN36496184-rid18804753.denovo.13, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABNMVF010000015.1 Salmonella enterica strain PNUSAS363427 SAMN36496184-rid18804753.denovo.18, whole genome shotgun sequence	3381..3642																																																avrA	ABNMVF010000002.1	553678..554547	99.54	870	0						
GCA_032456455.1_PDT001818883.1_genomic.fna	Salmonella_enterica	0.5212	489.886 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMVG010000001.1 Salmonella enterica strain PNUSAS363411 SAMN36496181-rid18804763.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMVG010000022.1 Salmonella enterica strain PNUSAS363411 SAMN36496181-rid18804763.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMVG010000012.1 Salmonella enterica strain PNUSAS363411 SAMN36496181-rid18804763.denovo.14, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNMVG010000015.1 Salmonella enterica strain PNUSAS363411 SAMN36496181-rid18804763.denovo.18, whole genome shotgun sequence	3415..3676																																																avrA	ABNMVG010000002.1	553636..554505	99.54	870	0						
GCA_032456475.1_PDT001818884.1_genomic.fna	Salmonella_enterica	0.5196	490.114 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMVH010000001.1 Salmonella enterica strain PNUSAS363412 SAMN36496197-rid18804773.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMVH010000024.1 Salmonella enterica strain PNUSAS363412 SAMN36496197-rid18804773.guided.10, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMVH010000012.1 Salmonella enterica strain PNUSAS363412 SAMN36496197-rid18804773.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNMVH010000017.1 Salmonella enterica strain PNUSAS363412 SAMN36496197-rid18804773.denovo.20, whole genome shotgun sequence	3349..3610		enterobacteriales	IncX1	98.93	374 / 374	ABNMVH010000013.1 Salmonella enterica strain PNUSAS363412 SAMN36496197-rid18804773.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNMVH010000002.1	553690..554559	99.54	870	0						
GCA_032456495.1_PDT001818880.1_genomic.fna	Salmonella_enterica	0.5209	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMVK010000001.1 Salmonella enterica strain PNUSAS363417 SAMN36496193-rid18804733.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMVK010000023.1 Salmonella enterica strain PNUSAS363417 SAMN36496193-rid18804733.guided.13, whole genome shotgun sequence	18186..18623	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMVK010000012.1 Salmonella enterica strain PNUSAS363417 SAMN36496193-rid18804733.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNMVK010000012.1 Salmonella enterica strain PNUSAS363417 SAMN36496193-rid18804733.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNMVK010000002.1	553427..554296	99.54	870	0						
GCA_032456515.1_PDT001818879.1_genomic.fna	Salmonella_enterica	0.5206	708.825 KB	2	aroC_50,dnaN_63,hemD_25,hisD_72,purE_59,sucA_71,thrA_63	174	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_63	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_59	sucA	100	100	sucA_71	thrA	100	100	thrA_63	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMVJ010000001.1 Salmonella enterica strain PNUSAS363409 SAMN36496191-rid18804723.denovo.01, whole genome shotgun sequence	412883..413320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMVJ010000023.1 Salmonella enterica strain PNUSAS363409 SAMN36496191-rid18804723.guided.09, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032456535.1_PDT001818878.1_genomic.fna	Salmonella_enterica	0.5215	302.519 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_110,sucA_9,thrA_2	302	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_110	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMVL010000001.1 Salmonella enterica strain PNUSAS363422 SAMN36496186-rid18804713.denovo.01, whole genome shotgun sequence	207030..207467	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNMVL010000042.1 Salmonella enterica strain PNUSAS363422 SAMN36496186-rid18804713.guided.13, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNMVL010000014.1 Salmonella enterica strain PNUSAS363422 SAMN36496186-rid18804713.denovo.15, whole genome shotgun sequence	48408..49050	enterobacteriales	IncFII(S)	100	262 / 262	ABNMVL010000014.1 Salmonella enterica strain PNUSAS363422 SAMN36496186-rid18804713.denovo.15, whole genome shotgun sequence	64135..64396																																																avrA	ABNMVL010000004.1	208856..209725	99.885	870	0						
GCA_032456555.1_PDT001818877.1_genomic.fna	Salmonella_enterica	0.5207	410.854 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMVM010000001.1 Salmonella enterica strain PNUSAS363424 SAMN36496196-rid18804703.denovo.01, whole genome shotgun sequence	835205..835642	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMVM010000023.1 Salmonella enterica strain PNUSAS363424 SAMN36496196-rid18804703.guided.14, whole genome shotgun sequence	3713..4150	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMVM010000003.1	148520..149389	99.77	870	0						
GCA_032456575.1_PDT001818876.1_genomic.fna	Salmonella_enterica	0.5209	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMVN010000001.1 Salmonella enterica strain PNUSAS363410 SAMN36496194-rid18804693.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMVN010000023.1 Salmonella enterica strain PNUSAS363410 SAMN36496194-rid18804693.guided.12, whole genome shotgun sequence	26587..27024	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMVN010000011.1 Salmonella enterica strain PNUSAS363410 SAMN36496194-rid18804693.denovo.13, whole genome shotgun sequence	40541..41183	enterobacteriales	IncFII(S)	100	262 / 262	ABNMVN010000015.1 Salmonella enterica strain PNUSAS363410 SAMN36496194-rid18804693.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABNMVN010000002.1	553636..554505	99.54	870	0						
GCA_032456595.1_PDT001818875.1_genomic.fna	Salmonella_enterica	0.5221	355.943 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,sul2,sul2,tet(A),tet(A),dfrA5,dfrA5	0		4	IncB/O/K/Z,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMVP010000001.1 Salmonella enterica strain PNUSAS363423 SAMN36496198-rid18803153.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMVP010000020.1 Salmonella enterica strain PNUSAS363423 SAMN36496198-rid18803153.denovo.20, whole genome shotgun sequence	61783..62619	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMVP010000020.1 Salmonella enterica strain PNUSAS363423 SAMN36496198-rid18803153.denovo.20, whole genome shotgun sequence	60980..61783	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNMVP010000049.1 Salmonella enterica strain PNUSAS363423 SAMN36496198-rid18803153.guided.23, whole genome shotgun sequence	18178..18615	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMVP010000051.1 Salmonella enterica strain PNUSAS363423 SAMN36496198-rid18803153.guided.34, whole genome shotgun sequence	5439..6275	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMVP010000051.1 Salmonella enterica strain PNUSAS363423 SAMN36496198-rid18803153.guided.34, whole genome shotgun sequence	4636..5439	Streptomycin	AF321551	sul2	100	816/816	ABNMVP010000020.1 Salmonella enterica strain PNUSAS363423 SAMN36496198-rid18803153.denovo.20, whole genome shotgun sequence	60104..60919	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNMVP010000051.1 Salmonella enterica strain PNUSAS363423 SAMN36496198-rid18803153.guided.34, whole genome shotgun sequence	3760..4575	Sulfamethoxazole	AY034138	tet(A)	99.92	1200/1200	ABNMVP010000036.1 Salmonella enterica strain PNUSAS363423 SAMN36496198-rid18803153.denovo.42, whole genome shotgun sequence	1472..2671	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNMVP010000053.1 Salmonella enterica strain PNUSAS363423 SAMN36496198-rid18803153.guided.41, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	dfrA5	100	474/474	ABNMVP010000031.1 Salmonella enterica strain PNUSAS363423 SAMN36496198-rid18803153.denovo.35, whole genome shotgun sequence	3007..3480	Trimethoprim	X12868	dfrA5	100	474/474	ABNMVP010000052.1 Salmonella enterica strain PNUSAS363423 SAMN36496198-rid18803153.guided.37, whole genome shotgun sequence	2213..2686	Trimethoprim	X12868																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncB/O/K/Z	96.69	151 / 151	ABNMVP010000020.1 Salmonella enterica strain PNUSAS363423 SAMN36496198-rid18803153.denovo.20, whole genome shotgun sequence	6255..6405	enterobacteriales	IncFIB(S)	100	643 / 643	ABNMVP010000016.1 Salmonella enterica strain PNUSAS363423 SAMN36496198-rid18803153.denovo.16, whole genome shotgun sequence	48414..49056		enterobacteriales	IncFII(S)	100	262 / 262	ABNMVP010000016.1 Salmonella enterica strain PNUSAS363423 SAMN36496198-rid18803153.denovo.16, whole genome shotgun sequence	64141..64402		enterobacteriales	IncI1-I(Alpha)	95.65	138 / 142	ABNMVP010000026.1 Salmonella enterica strain PNUSAS363423 SAMN36496198-rid18803153.denovo.28, whole genome shotgun sequence	17345..17480																																		avrA	ABNMVP010000002.1	209190..210059	99.885	870	0						
GCA_032456615.1_PDT001818874.1_genomic.fna	Salmonella_enterica	0.5209	489.933 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMVO010000001.1 Salmonella enterica strain PNUSAS363413 SAMN36496189-rid18804683.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMVO010000017.1 Salmonella enterica strain PNUSAS363413 SAMN36496189-rid18804683.guided.10, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABNMVO010000002.1	553092..553961	99.54	870	0						
GCA_032456635.1_PDT001818872.1_genomic.fna	Salmonella_enterica	0.5186	450.597 KB	4	aroC_19,dnaN_20!,dnaN_20!,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	Unknown	4:f,g:-	6	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,fosA7,fosA7,qnrB19,qnrB19,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col156,Col440I,IncX1	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20!	dnaN	100	100	dnaN_20!	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNMVR010000001.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.denovo.01, whole genome shotgun sequence	803788..804225	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNMVR010000017.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.denovo.18, whole genome shotgun sequence	54798..55577	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABNMVR010000042.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.guided.19, whole genome shotgun sequence	51354..52133	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	98.17	438/438	ABNMVR010000045.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.guided.27, whole genome shotgun sequence	8677..9114	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNMVR010000002.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.denovo.02, whole genome shotgun sequence	311934..312356	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNMVR010000044.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.guided.24, whole genome shotgun sequence	14552..14974	Fosfomycin	LAPJ01000014	qnrB19	100	645/645	ABNMVR010000030.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.denovo.36, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNMVR010000047.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.guided.39, whole genome shotgun sequence	547..1191	Ciprofloxacin	EU432277	sul1	100	840/840	ABNMVR010000017.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.denovo.18, whole genome shotgun sequence	56082..56921	Sulfamethoxazole	U12338	sul1	100	840/840	ABNMVR010000042.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.guided.19, whole genome shotgun sequence	52638..53477	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNMVR010000023.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.denovo.28, whole genome shotgun sequence	7437..8636	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNMVR010000046.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.guided.29, whole genome shotgun sequence	6673..7872	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNMVR010000027.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.denovo.33, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNMVR010000030.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.denovo.36, whole genome shotgun sequence	1150..1280		enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNMVR010000031.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.denovo.37, whole genome shotgun sequence	1479..1609		enterobacteriales	Col156	94.81	154 / 154	ABNMVR010000026.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.denovo.32, whole genome shotgun sequence	792..945		enterobacteriales	Col440I	91.89	111 / 114	ABNMVR010000025.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.denovo.31, whole genome shotgun sequence	3044..3153		enterobacteriales	IncX1	98.93	374 / 374	ABNMVR010000020.1 Salmonella enterica strain PNUSAS363419 SAMN36496192-rid18804663.denovo.22, whole genome shotgun sequence	32399..32772																				avrA	ABNMVR010000004.1	220551..221420	99.655	870	0						
GCA_032456655.1_PDT001818873.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMVQ010000001.1 Salmonella enterica strain PNUSAS363421 SAMN36496187-rid18804673.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMVQ010000021.1 Salmonella enterica strain PNUSAS363421 SAMN36496187-rid18804673.guided.15, whole genome shotgun sequence	20990..21427	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMVQ010000011.1 Salmonella enterica strain PNUSAS363421 SAMN36496187-rid18804673.denovo.12, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABNMVQ010000014.1 Salmonella enterica strain PNUSAS363421 SAMN36496187-rid18804673.denovo.17, whole genome shotgun sequence	3385..3646																																																avrA	ABNMVQ010000002.1	553636..554505	99.54	870	0						
GCA_032456675.1_PDT001818870.1_genomic.fna	Salmonella_enterica	0.5204	204.394 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2,aac(6')-Iaa,aadA2,blaCARB-2,blaCARB-2,sul1,sul1,dfrA12,dfrA12,bleO,bleO	0		4	Col(pHAD28),Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMVT010000003.1 Salmonella enterica strain PNUSAS363414 SAMN36496182-rid18804643.denovo.03, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2	99.87	792/792	ABNMVT010000019.1 Salmonella enterica strain PNUSAS363414 SAMN36496182-rid18804643.denovo.19, whole genome shotgun sequence	77177..77968	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	100	438/438	ABNMVT010000057.1 Salmonella enterica strain PNUSAS363414 SAMN36496182-rid18804643.guided.38, whole genome shotgun sequence	6673..7110	Amikacin, Tobramycin	NC_003197	aadA2	99.87	792/792	ABNMVT010000059.1 Salmonella enterica strain PNUSAS363414 SAMN36496182-rid18804643.guided.47, whole genome shotgun sequence	944..1735	Spectinomycin, Streptomycin	JQ364967	blaCARB-2	100	867/867	ABNMVT010000026.1 Salmonella enterica strain PNUSAS363414 SAMN36496182-rid18804643.denovo.27, whole genome shotgun sequence	59..925	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNMVT010000061.1 Salmonella enterica strain PNUSAS363414 SAMN36496182-rid18804643.guided.51, whole genome shotgun sequence	100..966	Ampicillin, Amoxicillin, Piperacillin	M69058	sul1	100	840/840	ABNMVT010000026.1 Salmonella enterica strain PNUSAS363414 SAMN36496182-rid18804643.denovo.27, whole genome shotgun sequence	1483..2322	Sulfamethoxazole	U12338	sul1	100	840/840	ABNMVT010000058.1 Salmonella enterica strain PNUSAS363414 SAMN36496182-rid18804643.guided.46, whole genome shotgun sequence	391..1230	Sulfamethoxazole	U12338	dfrA12	100	495/498	ABNMVT010000019.1 Salmonella enterica strain PNUSAS363414 SAMN36496182-rid18804643.denovo.19, whole genome shotgun sequence	78376..78870	Trimethoprim	AM040708	dfrA12	100	498/498	ABNMVT010000059.1 Salmonella enterica strain PNUSAS363414 SAMN36496182-rid18804643.guided.47, whole genome shotgun sequence	39..536	Trimethoprim	AM040708	bleO	100	392/399	ABNMVT010000019.1 Salmonella enterica strain PNUSAS363414 SAMN36496182-rid18804643.denovo.19, whole genome shotgun sequence	75589..75980	Bleomycin	AF051917	bleO	100	392/399	ABNMVT010000060.1 Salmonella enterica strain PNUSAS363414 SAMN36496182-rid18804643.guided.48, whole genome shotgun sequence	176..567	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNMVT010000039.1 Salmonella enterica strain PNUSAS363414 SAMN36496182-rid18804643.denovo.42, whole genome shotgun sequence	186..316	enterobacteriales	Col156	94.81	154 / 154	ABNMVT010000040.1 Salmonella enterica strain PNUSAS363414 SAMN36496182-rid18804643.denovo.43, whole genome shotgun sequence	791..944		enterobacteriales	IncFIB(S)	100	643 / 643	ABNMVT010000019.1 Salmonella enterica strain PNUSAS363414 SAMN36496182-rid18804643.denovo.19, whole genome shotgun sequence	29361..30003		enterobacteriales	IncFII(S)	100	262 / 262	ABNMVT010000019.1 Salmonella enterica strain PNUSAS363414 SAMN36496182-rid18804643.denovo.19, whole genome shotgun sequence	45088..45349																																		avrA	ABNMVT010000001.1	506659..507528	99.885	870	0						
GCA_032456695.1_PDT001818871.1_genomic.fna	Salmonella_enterica	0.5209	489.885 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMVS010000001.1 Salmonella enterica strain PNUSAS363425 SAMN36496179-rid18804653.denovo.01, whole genome shotgun sequence	774368..774805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMVS010000023.1 Salmonella enterica strain PNUSAS363425 SAMN36496179-rid18804653.guided.13, whole genome shotgun sequence	18792..19229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMVS010000012.1 Salmonella enterica strain PNUSAS363425 SAMN36496179-rid18804653.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNMVS010000015.1 Salmonella enterica strain PNUSAS363425 SAMN36496179-rid18804653.denovo.18, whole genome shotgun sequence	3403..3664																																																avrA	ABNMVS010000002.1	553568..554437	99.54	870	0						
GCA_032456715.1_PDT001818869.1_genomic.fna	Salmonella_enterica	0.5216	759.074 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNMVU010000001.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.denovo.01, whole genome shotgun sequence	638774..639211	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNMVU010000018.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.denovo.23, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNMVU010000024.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.guided.08, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNMVU010000028.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.guided.22, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNMVU010000018.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.denovo.23, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNMVU010000028.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.guided.22, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNMVU010000017.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.denovo.20, whole genome shotgun sequence	6582..7487	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNMVU010000027.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.guided.21, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNMVU010000011.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.denovo.14, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNMVU010000029.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.guided.24, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNMVU010000018.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.denovo.23, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNMVU010000028.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.guided.22, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNMVU010000017.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.denovo.20, whole genome shotgun sequence	432..1271	Sulfamethoxazole	U12338	sul1	100	840/840	ABNMVU010000031.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.guided.28, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNMVU010000011.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.denovo.14, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNMVU010000030.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.guided.25, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNMVU010000011.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.denovo.14, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNMVU010000030.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.guided.25, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNMVU010000011.1 Salmonella enterica strain PNUSAS363418 SAMN36496199-rid18804633.denovo.14, whole genome shotgun sequence	14940..15190																																																						avrA	ABNMVU010000003.1	553474..554343	99.77	870	0						
GCA_032456735.1_PDT001818868.1_genomic.fna	Salmonella_enterica	0.521	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMVV010000001.1 Salmonella enterica strain PNUSAS363428 SAMN36496195-rid18804623.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMVV010000026.1 Salmonella enterica strain PNUSAS363428 SAMN36496195-rid18804623.denovo.29, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMVV010000026.1 Salmonella enterica strain PNUSAS363428 SAMN36496195-rid18804623.denovo.29, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNMVV010000038.1 Salmonella enterica strain PNUSAS363428 SAMN36496195-rid18804623.denovo.43, whole genome shotgun sequence	93..908	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin	X62115	aac(6')-Iaa	97.49	438/438	ABNMVV010000045.1 Salmonella enterica strain PNUSAS363428 SAMN36496195-rid18804623.guided.16, whole genome shotgun sequence	30616..31053	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMVV010000048.1 Salmonella enterica strain PNUSAS363428 SAMN36496195-rid18804623.guided.39, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMVV010000048.1 Salmonella enterica strain PNUSAS363428 SAMN36496195-rid18804623.guided.39, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNMVV010000049.1 Salmonella enterica strain PNUSAS363428 SAMN36496195-rid18804623.guided.45, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin	X62115	sul1	100	840/840	ABNMVV010000026.1 Salmonella enterica strain PNUSAS363428 SAMN36496195-rid18804623.denovo.29, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNMVV010000048.1 Salmonella enterica strain PNUSAS363428 SAMN36496195-rid18804623.guided.39, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNMVV010000026.1 Salmonella enterica strain PNUSAS363428 SAMN36496195-rid18804623.denovo.29, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNMVV010000047.1 Salmonella enterica strain PNUSAS363428 SAMN36496195-rid18804623.guided.31, whole genome shotgun sequence	8329..9528	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNMVV010000025.1 Salmonella enterica strain PNUSAS363428 SAMN36496195-rid18804623.denovo.28, whole genome shotgun sequence	25435..25994																																																						avrA	ABNMVV010000002.1	95066..95935	99.655	870	0						
GCA_032456755.1_PDT001818866.1_genomic.fna	Salmonella_enterica	0.5212	489.886 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMVW010000001.1 Salmonella enterica strain PNUSAS363416 SAMN36496185-rid18804603.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMVW010000022.1 Salmonella enterica strain PNUSAS363416 SAMN36496185-rid18804603.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMVW010000011.1 Salmonella enterica strain PNUSAS363416 SAMN36496185-rid18804603.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNMVW010000014.1 Salmonella enterica strain PNUSAS363416 SAMN36496185-rid18804603.denovo.17, whole genome shotgun sequence	3402..3663																																																avrA	ABNMVW010000002.1	553636..554505	99.54	870	0						
GCA_032456775.1_PDT001818865.1_genomic.fna	Salmonella_enterica	0.5211	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMVX010000001.1 Salmonella enterica strain PNUSAS363429 SAMN36496183-rid18803143.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMVX010000022.1 Salmonella enterica strain PNUSAS363429 SAMN36496183-rid18803143.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMVX010000012.1 Salmonella enterica strain PNUSAS363429 SAMN36496183-rid18803143.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNMVX010000012.1 Salmonella enterica strain PNUSAS363429 SAMN36496183-rid18803143.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNMVX010000002.1	553636..554505	99.54	870	0						
GCA_032456795.1_PDT001818864.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMVY010000001.1 Salmonella enterica strain PNUSAS363415 SAMN36496190-rid18804593.denovo.01, whole genome shotgun sequence	774368..774805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMVY010000020.1 Salmonella enterica strain PNUSAS363415 SAMN36496190-rid18804593.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMVY010000012.1 Salmonella enterica strain PNUSAS363415 SAMN36496190-rid18804593.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNMVY010000012.1 Salmonella enterica strain PNUSAS363415 SAMN36496190-rid18804593.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNMVY010000002.1	553636..554505	99.54	870	0						
GCA_032456855.1_PDT001818857.1_genomic.fna	Salmonella_enterica	0.5218	349.774 KB	6	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMWC010000001.1 Salmonella enterica strain PNUSAS363383 SAMN36495996-rid18804523.denovo.01, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNMWC010000032.1 Salmonella enterica strain PNUSAS363383 SAMN36495996-rid18804523.guided.15, whole genome shotgun sequence	10493..10930	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNMWC010000025.1 Salmonella enterica strain PNUSAS363383 SAMN36495996-rid18804523.denovo.28, whole genome shotgun sequence	557..687	enterobacteriales	ColRNAI	90.83	109 / 130	ABNMWC010000023.1 Salmonella enterica strain PNUSAS363383 SAMN36495996-rid18804523.denovo.26, whole genome shotgun sequence	1016..1124																																																avrA	ABNMWC010000013.1	36961..37830	99.425	870	0						
GCA_032456865.1_PDT001818861.1_genomic.fna	Salmonella_enterica	0.5169	151.822 KB	11	aroC_287,dnaN_256,hemD_283*,hisD_151*,purE_223,sucA_289,thrA_257	Unknown	13:a:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_287	dnaN	100	100	dnaN_256	hemD	99.0740740740741	100	hemD_283*	hisD	97.2055888223553	100	hisD_151*	purE	100	100	purE_223	sucA	100	100	sucA_289	thrA	100	100	thrA_257	13	a	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 13:a:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032456915.1_PDT001818785.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMWF010000001.1 Salmonella enterica strain PNUSAS363393 SAMN36496029-rid18803903.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMWF010000024.1 Salmonella enterica strain PNUSAS363393 SAMN36496029-rid18803903.guided.17, whole genome shotgun sequence	32242..32679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMWF010000015.1 Salmonella enterica strain PNUSAS363393 SAMN36496029-rid18803903.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNMWF010000015.1 Salmonella enterica strain PNUSAS363393 SAMN36496029-rid18803903.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNMWF010000002.1	553636..554505	99.54	870	0						
GCA_032456935.1_PDT001917451.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMWE010000001.1 Salmonella enterica strain PNUSAS389205 SAMN37691468-rid19628893.denovo.01, whole genome shotgun sequence	771821..772258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMWE010000025.1 Salmonella enterica strain PNUSAS389205 SAMN37691468-rid19628893.guided.12, whole genome shotgun sequence	31733..32170	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMWE010000012.1 Salmonella enterica strain PNUSAS389205 SAMN37691468-rid19628893.denovo.13, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABNMWE010000016.1 Salmonella enterica strain PNUSAS389205 SAMN37691468-rid19628893.denovo.18, whole genome shotgun sequence	3393..3654																																																avrA	ABNMWE010000002.1	553636..554505	99.54	870	0						
GCA_032456995.1_PDT001818782.1_genomic.fna	Salmonella_enterica	0.5155	373.603 KB	5	aroC_145,dnaN_26,hemD_30,hisD_144,purE_21,sucA_145,thrA_28	430	47:k:z35	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_145	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_144	purE	100	100	purE_21	sucA	100	100	sucA_145	thrA	100	100	thrA_28	47	k	z35	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 47:k:z35		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMWI010000002.1 Salmonella enterica strain PNUSAS363394 SAMN36496030-rid18803873.denovo.02, whole genome shotgun sequence	457516..457953	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMWI010000031.1 Salmonella enterica strain PNUSAS363394 SAMN36496030-rid18803873.guided.17, whole genome shotgun sequence	6102..6539	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMWI010000003.1	144820..145689	96.207	870	0						
GCA_032457015.1_PDT001818781.1_genomic.fna	Salmonella_enterica	0.5214	412.183 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMWJ010000001.1 Salmonella enterica strain PNUSAS363374 SAMN36495988-rid18803863.denovo.01, whole genome shotgun sequence	774527..774964	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMWJ010000024.1 Salmonella enterica strain PNUSAS363374 SAMN36495988-rid18803863.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMWJ010000017.1 Salmonella enterica strain PNUSAS363374 SAMN36495988-rid18803863.denovo.17, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNMWJ010000014.1 Salmonella enterica strain PNUSAS363374 SAMN36495988-rid18803863.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNMWJ010000002.1	553559..554428	99.54	870	0						
GCA_032457315.1_PDT001818756.1_genomic.fna	Salmonella_enterica	0.5219	235.334 KB	6	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNMWY010000002.1 Salmonella enterica strain PNUSAS363380 SAMN36495993-rid18803653.denovo.02, whole genome shotgun sequence	100631..101068	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	396/438	ABNMWY010000036.1 Salmonella enterica strain PNUSAS363380 SAMN36495993-rid18803653.guided.31, whole genome shotgun sequence	1..396	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMWY010000001.1	507913..508781	99.655	870	0						
GCA_032457335.1_PDT001818755.1_genomic.fna	Salmonella_enterica	0.5218	568.743 KB	3	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNMWZ010000001.1 Salmonella enterica strain PNUSAS363392 SAMN36496027-rid18803643.denovo.01, whole genome shotgun sequence	573453..573890	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNMWZ010000026.1 Salmonella enterica strain PNUSAS363392 SAMN36496027-rid18803643.guided.19, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMWZ010000002.1	553467..554336	99.77	870	0						
GCA_032457375.1_PDT001818753.1_genomic.fna	Salmonella_enterica	0.5212	191.426 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMXB010000001.1 Salmonella enterica strain PNUSAS363390 SAMN36496031-rid18803623.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNMXB010000051.1 Salmonella enterica strain PNUSAS363390 SAMN36496031-rid18803623.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMXB010000007.1	154652..155520	99.77	870	0						
GCA_032457395.1_PDT001818754.1_genomic.fna	Salmonella_enterica	0.5203	406.451 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMXA010000001.1 Salmonella enterica strain PNUSAS363389 SAMN36496028-rid18803633.denovo.01, whole genome shotgun sequence	1064539..1064976	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMXA010000024.1 Salmonella enterica strain PNUSAS363389 SAMN36496028-rid18803633.guided.18, whole genome shotgun sequence	3312..3749	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMXA010000014.1 Salmonella enterica strain PNUSAS363389 SAMN36496028-rid18803633.denovo.15, whole genome shotgun sequence	48668..49310	enterobacteriales	IncFII(S)	100	262 / 262	ABNMXA010000014.1 Salmonella enterica strain PNUSAS363389 SAMN36496028-rid18803633.denovo.15, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNMXA010000015.1 Salmonella enterica strain PNUSAS363389 SAMN36496028-rid18803633.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNMXA010000002.1	553629..554498	99.54	870	0						
GCA_032457415.1_PDT001818749.1_genomic.fna	Salmonella_enterica	0.5215	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMXG010000001.1 Salmonella enterica strain PNUSAS363378 SAMN36495992-rid18803583.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMXG010000025.1 Salmonella enterica strain PNUSAS363378 SAMN36495992-rid18803583.guided.15, whole genome shotgun sequence	36801..37238	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMXG010000018.1 Salmonella enterica strain PNUSAS363378 SAMN36495992-rid18803583.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNMXG010000019.1 Salmonella enterica strain PNUSAS363378 SAMN36495992-rid18803583.denovo.22, whole genome shotgun sequence	3397..3658																																																avrA	ABNMXG010000002.1	553636..554505	99.54	870	0						
GCA_032457435.1_PDT001818750.1_genomic.fna	Salmonella_enterica	0.5217	229.313 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMXE010000001.1 Salmonella enterica strain PNUSAS363373 SAMN36495985-rid18803593.denovo.01, whole genome shotgun sequence	381670..382107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNMXE010000039.1 Salmonella enterica strain PNUSAS363373 SAMN36495985-rid18803593.guided.31, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMXE010000003.1	208114..208982	99.77	870	0						
GCA_032457455.1_PDT001818751.1_genomic.fna	Salmonella_enterica	0.5212	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMXD010000001.1 Salmonella enterica strain PNUSAS363391 SAMN36496026-rid18803603.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMXD010000026.1 Salmonella enterica strain PNUSAS363391 SAMN36496026-rid18803603.guided.15, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMXD010000017.1 Salmonella enterica strain PNUSAS363391 SAMN36496026-rid18803603.denovo.20, whole genome shotgun sequence	6839..7481	enterobacteriales	IncFII(S)	100	262 / 262	ABNMXD010000014.1 Salmonella enterica strain PNUSAS363391 SAMN36496026-rid18803603.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNMXD010000002.1	553642..554511	99.54	870	0						
GCA_032457475.1_PDT001818748.1_genomic.fna	Salmonella_enterica	0.5218	167.931 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMXF010000001.1 Salmonella enterica strain PNUSAS363381 SAMN36495995-rid18803573.denovo.01, whole genome shotgun sequence	233237..233674	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNMXF010000058.1 Salmonella enterica strain PNUSAS363381 SAMN36495995-rid18803573.guided.48, whole genome shotgun sequence	558..995	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMXF010000006.1	39911..40779	99.77	870	0						
GCA_032457495.1_PDT001818747.1_genomic.fna	Salmonella_enterica	0.5221	209.976 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMXH010000001.1 Salmonella enterica strain PNUSAS363371 SAMN36495979-rid18803563.denovo.01, whole genome shotgun sequence	145310..145747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNMXH010000044.1 Salmonella enterica strain PNUSAS363371 SAMN36495979-rid18803563.guided.40, whole genome shotgun sequence	2570..3007	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMXH010000003.1	208058..208926	99.77	870	0						
GCA_032457755.1_PDT001818734.1_genomic.fna	Salmonella_enterica	0.5211	440.018 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMXU010000001.1 Salmonella enterica strain PNUSAS363382 SAMN36495997-rid18803453.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMXU010000028.1 Salmonella enterica strain PNUSAS363382 SAMN36495997-rid18803453.guided.15, whole genome shotgun sequence	24548..24985	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMXU010000019.1 Salmonella enterica strain PNUSAS363382 SAMN36495997-rid18803453.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNMXU010000016.1 Salmonella enterica strain PNUSAS363382 SAMN36495997-rid18803453.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABNMXU010000003.1	175197..176066	99.54	870	0						
GCA_032457775.1_PDT001818732.1_genomic.fna	Salmonella_enterica	0.5209	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMXV010000001.1 Salmonella enterica strain PNUSAS363379 SAMN36495994-rid18803443.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMXV010000022.1 Salmonella enterica strain PNUSAS363379 SAMN36495994-rid18803443.guided.15, whole genome shotgun sequence	2238..2675	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMXV010000013.1 Salmonella enterica strain PNUSAS363379 SAMN36495994-rid18803443.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNMXV010000013.1 Salmonella enterica strain PNUSAS363379 SAMN36495994-rid18803443.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNMXV010000002.1	553636..554505	99.54	870	0						
GCA_032457815.1_PDT001818733.1_genomic.fna	Salmonella_enterica	0.5218	225.553 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMXW010000001.1 Salmonella enterica strain PNUSAS363375 SAMN36495989-rid18802973.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNMXW010000044.1 Salmonella enterica strain PNUSAS363375 SAMN36495989-rid18802973.guided.36, whole genome shotgun sequence	4661..5098	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNMXW010000024.1 Salmonella enterica strain PNUSAS363375 SAMN36495989-rid18802973.denovo.24, whole genome shotgun sequence	44729..45371	enterobacteriales	IncFII(S)	100	262 / 262	ABNMXW010000024.1 Salmonella enterica strain PNUSAS363375 SAMN36495989-rid18802973.denovo.24, whole genome shotgun sequence	29383..29644																																																avrA	ABNMXW010000010.1	94121..94989	100	869	0						
GCA_032457895.1_PDT001818726.1_genomic.fna	Salmonella_enterica	0.5213	339.462 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMYC010000002.1 Salmonella enterica strain PNUSAS363376 SAMN36495991-rid18803383.denovo.02, whole genome shotgun sequence	200042..200479	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMYC010000048.1 Salmonella enterica strain PNUSAS363376 SAMN36495991-rid18803383.guided.37, whole genome shotgun sequence	1133..1570	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMYC010000023.1 Salmonella enterica strain PNUSAS363376 SAMN36495991-rid18803383.denovo.23, whole genome shotgun sequence	2525..3167	enterobacteriales	IncFII(S)	100	262 / 262	ABNMYC010000026.1 Salmonella enterica strain PNUSAS363376 SAMN36495991-rid18803383.denovo.26, whole genome shotgun sequence	2399..2660																																																avrA	ABNMYC010000001.1	509664..510533	99.54	870	0						
GCA_032457935.1_PDT001917452.1_genomic.fna	Salmonella_enterica	0.5207	477.331 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	ColRNAI,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMYD010000001.1 Salmonella enterica strain PNUSAS389194 SAMN37691471-rid19628903.denovo.01, whole genome shotgun sequence	733711..734148	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMYD010000030.1 Salmonella enterica strain PNUSAS389194 SAMN37691471-rid19628903.guided.23, whole genome shotgun sequence	2190..2627	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABNMYD010000021.1 Salmonella enterica strain PNUSAS389194 SAMN37691471-rid19628903.denovo.24, whole genome shotgun sequence	3981..4111	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMYD010000020.1 Salmonella enterica strain PNUSAS389194 SAMN37691471-rid19628903.denovo.20, whole genome shotgun sequence	18103..18745		enterobacteriales	IncFII(S)	100	262 / 262	ABNMYD010000020.1 Salmonella enterica strain PNUSAS389194 SAMN37691471-rid19628903.denovo.20, whole genome shotgun sequence	3401..3662		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNMYD010000015.1 Salmonella enterica strain PNUSAS389194 SAMN37691471-rid19628903.denovo.15, whole genome shotgun sequence	79861..80002																																		avrA	ABNMYD010000002.1	584527..585396	99.54	870	0						
GCA_032457975.1_PDT001818722.1_genomic.fna	Salmonella_enterica	0.5202	456.446 KB	4	aroC_84,dnaN_342,hemD_256,hisD_435,purE_378,sucA_182,thrA_362	1456	18:b:1,5	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_84	dnaN	100	100	dnaN_342	hemD	100	100	hemD_256	hisD	100	100	hisD_435	purE	100	100	purE_378	sucA	100	100	sucA_182	thrA	100	100	thrA_362	18	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fluntern		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNMYH010000001.1 Salmonella enterica strain PNUSAS363372 SAMN36495983-rid18803353.denovo.01, whole genome shotgun sequence	459160..459597	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNMYH010000044.1 Salmonella enterica strain PNUSAS363372 SAMN36495983-rid18803353.guided.25, whole genome shotgun sequence	10890..11327	Amikacin, Tobramycin	NC_003197	fosA7	99.76	423/423	ABNMYH010000003.1 Salmonella enterica strain PNUSAS363372 SAMN36495983-rid18803353.denovo.03, whole genome shotgun sequence	266478..266900	Fosfomycin	LAPJ01000014	fosA7	99.76	423/423	ABNMYH010000045.1 Salmonella enterica strain PNUSAS363372 SAMN36495983-rid18803353.guided.26, whole genome shotgun sequence	14113..14535	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNMYH010000020.1 Salmonella enterica strain PNUSAS363372 SAMN36495983-rid18803353.denovo.20, whole genome shotgun sequence	15752..16285																																																						avrA	ABNMYH010000002.1	564857..565726	98.621	870	0						
GCA_032458035.1_PDT001818721.1_genomic.fna	Salmonella_enterica	0.5224	166.186 KB	8	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aph(6)-Id,aph(6)-Id,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNMYI010000001.1 Salmonella enterica strain PNUSAS363369 SAMN36495980-rid18803343.denovo.01, whole genome shotgun sequence	385979..386416	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMYI010000037.1 Salmonella enterica strain PNUSAS363369 SAMN36495980-rid18803343.denovo.37, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNMYI010000037.1 Salmonella enterica strain PNUSAS363369 SAMN36495980-rid18803343.denovo.37, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNMYI010000037.1 Salmonella enterica strain PNUSAS363369 SAMN36495980-rid18803343.denovo.37, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNMYI010000037.1 Salmonella enterica strain PNUSAS363369 SAMN36495980-rid18803343.denovo.37, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNMYI010000037.1 Salmonella enterica strain PNUSAS363369 SAMN36495980-rid18803343.denovo.37, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aph(3'')-Ib	100	803/804	ABNMYI010000051.1 Salmonella enterica strain PNUSAS363369 SAMN36495980-rid18803343.guided.43, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNMYI010000051.1 Salmonella enterica strain PNUSAS363369 SAMN36495980-rid18803343.guided.43, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNMYI010000051.1 Salmonella enterica strain PNUSAS363369 SAMN36495980-rid18803343.guided.43, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNMYI010000051.1 Salmonella enterica strain PNUSAS363369 SAMN36495980-rid18803343.guided.43, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	aph(6)-Id	100	773/837	ABNMYI010000051.1 Salmonella enterica strain PNUSAS363369 SAMN36495980-rid18803343.guided.43, whole genome shotgun sequence	1682..2454	Streptomycin	AF024602	aph(6)-Id	100	773/837	ABNMYI010000051.1 Salmonella enterica strain PNUSAS363369 SAMN36495980-rid18803343.guided.43, whole genome shotgun sequence	1682..2454	Streptomycin	M28829	aph(6)-Id	100	837/837	ABNMYI010000052.1 Salmonella enterica strain PNUSAS363369 SAMN36495980-rid18803343.guided.44, whole genome shotgun sequence	391..1227	Streptomycin	M28829	aph(6)-Id	99.88	837/837	ABNMYI010000053.1 Salmonella enterica strain PNUSAS363369 SAMN36495980-rid18803343.guided.45, whole genome shotgun sequence	391..1227	Streptomycin	M28829	tet(A)	100	1200/1200	ABNMYI010000038.1 Salmonella enterica strain PNUSAS363369 SAMN36495980-rid18803343.denovo.38, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNMYI010000050.1 Salmonella enterica strain PNUSAS363369 SAMN36495980-rid18803343.guided.42, whole genome shotgun sequence	600..1799	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMYI010000007.1	39546..40415	99.655	870	0						
GCA_032458055.1_PDT001818719.1_genomic.fna	Salmonella_enterica	0.5214	406.117 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMYL010000001.1 Salmonella enterica strain PNUSAS363370 SAMN36495982-rid18803323.denovo.01, whole genome shotgun sequence	774527..774964	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMYL010000028.1 Salmonella enterica strain PNUSAS363370 SAMN36495982-rid18803323.guided.19, whole genome shotgun sequence	10881..11318	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMYL010000020.1 Salmonella enterica strain PNUSAS363370 SAMN36495982-rid18803323.denovo.21, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNMYL010000022.1 Salmonella enterica strain PNUSAS363370 SAMN36495982-rid18803323.denovo.24, whole genome shotgun sequence	3387..3648																																																avrA	ABNMYL010000002.1	553553..554422	99.54	870	0						
GCA_032458195.1_PDT001818674.1_genomic.fna	Salmonella_enterica	0.5211	478.496 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMYP010000001.1 Salmonella enterica strain PNUSAS363289 SAMN36494809-rid18802933.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMYP010000025.1 Salmonella enterica strain PNUSAS363289 SAMN36494809-rid18802933.guided.13, whole genome shotgun sequence	33342..33779	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNMYP010000020.1 Salmonella enterica strain PNUSAS363289 SAMN36494809-rid18802933.denovo.23, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMYP010000015.1 Salmonella enterica strain PNUSAS363289 SAMN36494809-rid18802933.denovo.18, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABNMYP010000017.1 Salmonella enterica strain PNUSAS363289 SAMN36494809-rid18802933.denovo.20, whole genome shotgun sequence	3400..3661																																									avrA	ABNMYP010000002.1	553077..553946	99.54	870	0						
GCA_032458235.1_PDT001818672.1_genomic.fna	Salmonella_enterica	0.5201	477.504 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMYS010000001.1 Salmonella enterica strain PNUSAS363292 SAMN36494807-rid18802913.denovo.01, whole genome shotgun sequence	293148..293585	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMYS010000031.1 Salmonella enterica strain PNUSAS363292 SAMN36494807-rid18802913.guided.15, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMYS010000018.1 Salmonella enterica strain PNUSAS363292 SAMN36494807-rid18802913.denovo.21, whole genome shotgun sequence	6671..7313	enterobacteriales	IncFII(S)	100	262 / 262	ABNMYS010000026.1 Salmonella enterica strain PNUSAS363292 SAMN36494807-rid18802913.denovo.29, whole genome shotgun sequence	1724..1985		enterobacteriales	IncX1	98.93	374 / 374	ABNMYS010000014.1 Salmonella enterica strain PNUSAS363292 SAMN36494807-rid18802913.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNMYS010000011.1	39350..40219	99.54	870	0						
GCA_032458255.1_PDT001818673.1_genomic.fna	Salmonella_enterica	0.5221	259.257 KB	7	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNMYQ010000001.1 Salmonella enterica strain PNUSAS363294 SAMN36494804-rid18802923.denovo.01, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNMYQ010000032.1 Salmonella enterica strain PNUSAS363294 SAMN36494804-rid18802923.guided.23, whole genome shotgun sequence	40040..40477	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMYQ010000004.1	150306..151175	99.77	870	0						
GCA_032458315.1_PDT001818669.1_genomic.fna	Salmonella_enterica	0.5213	215.738 KB	7	aroC_20,dnaN_4,hemD_23,hisD_14,purE_16,sucA_19,thrA_18	42	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_20	dnaN	100	100	dnaN_4	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_19	thrA	100	100	thrA_18	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMYU010000003.1 Salmonella enterica strain PNUSAS363295 SAMN36494805-rid18802883.denovo.03, whole genome shotgun sequence	136254..136691	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMYU010000047.1 Salmonella enterica strain PNUSAS363295 SAMN36494805-rid18802883.guided.38, whole genome shotgun sequence	5878..6315	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032458335.1_PDT001818668.1_genomic.fna	Salmonella_enterica	0.5198	136.4 KB	10	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNMYV010000004.1 Salmonella enterica strain PNUSAS363290 SAMN36494811-rid18802873.denovo.04, whole genome shotgun sequence	230360..230797	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNMYV010000076.1 Salmonella enterica strain PNUSAS363290 SAMN36494811-rid18802873.guided.48, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNMYV010000054.1 Salmonella enterica strain PNUSAS363290 SAMN36494811-rid18802873.denovo.57, whole genome shotgun sequence	2209..2339	enterobacteriales	Col156	94.81	154 / 154	ABNMYV010000056.1 Salmonella enterica strain PNUSAS363290 SAMN36494811-rid18802873.denovo.59, whole genome shotgun sequence	792..945																																																avrA	ABNMYV010000032.1	39350..40219	99.54	870	0						
GCA_032458355.1_PDT001818667.1_genomic.fna	Salmonella_enterica	0.5201	317.745 KB	4	aroC_11,dnaN_10,hemD_13,hisD_13,purE_10,sucA_13,thrA_4	20	4:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMYW010000002.1 Salmonella enterica strain PNUSAS363296 SAMN36494806-rid18802863.denovo.02, whole genome shotgun sequence	571032..571469	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMYW010000026.1 Salmonella enterica strain PNUSAS363296 SAMN36494806-rid18802863.guided.20, whole genome shotgun sequence	11021..11458	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNMYW010000005.1 Salmonella enterica strain PNUSAS363296 SAMN36494806-rid18802863.denovo.05, whole genome shotgun sequence	155082..155504	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNMYW010000028.1 Salmonella enterica strain PNUSAS363296 SAMN36494806-rid18802863.guided.24, whole genome shotgun sequence	11123..11545	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032458375.1_PDT001818666.1_genomic.fna	Salmonella_enterica	0.5206	522.66 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNMYX010000001.1 Salmonella enterica strain PNUSAS363291 SAMN36494810-rid18802853.denovo.01, whole genome shotgun sequence	272714..273151	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNMYX010000018.1 Salmonella enterica strain PNUSAS363291 SAMN36494810-rid18802853.guided.12, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMYX010000002.1	160317..161186	99.54	870	0						
GCA_032458395.1_PDT001818665.1_genomic.fna	Salmonella_enterica	0.5209	170.668 KB	10	aroC_13,dnaN_109,hemD_49,hisD_13,purE_220,sucA_13,thrA_4	754	30:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(pCRY),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_220	sucA	100	100	sucA_13	thrA	100	100	thrA_4	30	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Urbana		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMZA010000001.1 Salmonella enterica strain PNUSAS363297 SAMN36494808-rid18802843.denovo.001, whole genome shotgun sequence	8109..8546	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMZA010000105.1 Salmonella enterica strain PNUSAS363297 SAMN36494808-rid18802843.guided.032, whole genome shotgun sequence	6419..6856	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNMZA010000039.1 Salmonella enterica strain PNUSAS363297 SAMN36494808-rid18802843.denovo.041, whole genome shotgun sequence	14498..15140	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNMZA010000037.1 Salmonella enterica strain PNUSAS363297 SAMN36494808-rid18802843.denovo.039, whole genome shotgun sequence	1664..2256		enterobacteriales	IncI1-I(Alpha)	98.6	143 / 142	ABNMZA010000041.1 Salmonella enterica strain PNUSAS363297 SAMN36494808-rid18802843.denovo.044, whole genome shotgun sequence	1817..1959																																									avrA	ABNMZA010000021.1	41532..42401	99.425	870	0						
GCA_032458415.1_PDT001818664.1_genomic.fna	Salmonella_enterica	0.5199	282.018 KB	6	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_19,thrA_12	582	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMYZ010000001.1 Salmonella enterica strain PNUSAS363293 SAMN36494803-rid18802833.denovo.01, whole genome shotgun sequence	479176..479613	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMYZ010000036.1 Salmonella enterica strain PNUSAS363293 SAMN36494803-rid18802833.guided.14, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.81	113 / 114	ABNMYZ010000028.1 Salmonella enterica strain PNUSAS363293 SAMN36494803-rid18802833.denovo.31, whole genome shotgun sequence	2528..2639	enterobacteriales	ColpVC	98.96	193 / 193	ABNMYZ010000030.1 Salmonella enterica strain PNUSAS363293 SAMN36494803-rid18802833.denovo.33, whole genome shotgun sequence	805..997																																																avrA	ABNMYZ010000005.1	39486..40355	99.54	870	0						
GCA_032458435.1_PDT001818237.1_genomic.fna	Salmonella_enterica	0.5219	521.125 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMZB010000001.1 Salmonella enterica strain PNUSAS361961 SAMN36494087-rid18799043.denovo.01, whole genome shotgun sequence	684096..684533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMZB010000026.1 Salmonella enterica strain PNUSAS361961 SAMN36494087-rid18799043.guided.15, whole genome shotgun sequence	32338..32775	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMZB010000002.1	650263..651132	99.77	870	0						
GCA_032458475.1_PDT001818236.1_genomic.fna	Salmonella_enterica	0.5214	341.897 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMZC010000002.1 Salmonella enterica strain PNUSAS363081 SAMN36494074-rid18799033.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNMZC010000047.1 Salmonella enterica strain PNUSAS363081 SAMN36494074-rid18799033.guided.30, whole genome shotgun sequence	10869..11306	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNMZC010000023.1 Salmonella enterica strain PNUSAS363081 SAMN36494074-rid18799033.denovo.24, whole genome shotgun sequence	44723..45365	enterobacteriales	IncFII(S)	100	262 / 262	ABNMZC010000023.1 Salmonella enterica strain PNUSAS363081 SAMN36494074-rid18799033.denovo.24, whole genome shotgun sequence	29377..29638																																																avrA	ABNMZC010000001.1	446666..447534	100	869	0						
GCA_032458495.1_PDT001818235.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMZD010000001.1 Salmonella enterica strain PNUSAS363071 SAMN36494088-rid18798353.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMZD010000028.1 Salmonella enterica strain PNUSAS363071 SAMN36494088-rid18798353.guided.20, whole genome shotgun sequence	8169..8606	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMZD010000016.1 Salmonella enterica strain PNUSAS363071 SAMN36494088-rid18798353.denovo.18, whole genome shotgun sequence	6802..7444	enterobacteriales	IncFII(S)	100	262 / 262	ABNMZD010000018.1 Salmonella enterica strain PNUSAS363071 SAMN36494088-rid18798353.denovo.21, whole genome shotgun sequence	3424..3685																																																avrA	ABNMZD010000002.1	553643..554512	99.54	870	0						
GCA_032458515.1_PDT001818230.1_genomic.fna	Salmonella_enterica	0.5232	48.304 KB	30	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNMZH010000058.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313544 SAMN36494080-rid18798343.denovo.058, whole genome shotgun sequence	12561..12998	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNMZH010000200.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313544 SAMN36494080-rid18798343.guided.099, whole genome shotgun sequence	2883..3320	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNMZH010000143.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313544 SAMN36494080-rid18798343.denovo.146, whole genome shotgun sequence	557..687	enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNMZH010000134.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313544 SAMN36494080-rid18798343.denovo.137, whole genome shotgun sequence	3974..4507																																																avrA	ABNMZH010000020.1	61536..62405	99.54	870	0						
GCA_032458535.1_PDT001818232.1_genomic.fna	Salmonella_enterica	0.521	394.873 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMZG010000001.1 Salmonella enterica strain PNUSAS363068 SAMN36494084-rid18799003.denovo.01, whole genome shotgun sequence	424300..424737	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMZG010000035.1 Salmonella enterica strain PNUSAS363068 SAMN36494084-rid18799003.guided.21, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMZG010000002.1	145172..146041	99.31	870	0						
GCA_032458555.1_PDT001818233.1_genomic.fna	Salmonella_enterica	0.5213	278.669 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMZF010000001.1 Salmonella enterica strain PNUSAS363075 SAMN36494077-rid18799013.denovo.01, whole genome shotgun sequence	458977..459414	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNMZF010000048.1 Salmonella enterica strain PNUSAS363075 SAMN36494077-rid18799013.guided.24, whole genome shotgun sequence	30260..30697	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNMZF010000034.1 Salmonella enterica strain PNUSAS363075 SAMN36494077-rid18799013.denovo.36, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNMZF010000050.1 Salmonella enterica strain PNUSAS363075 SAMN36494077-rid18799013.guided.37, whole genome shotgun sequence	4116..5321	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABNMZF010000002.1	508765..509634	99.885	870	0						
GCA_032458575.1_PDT001818231.1_genomic.fna	Salmonella_enterica	0.5222	277.561 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMZI010000001.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.denovo.01, whole genome shotgun sequence	339602..340039	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMZI010000025.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.denovo.30, whole genome shotgun sequence	5368..6204	Streptomycin	M28829	aph(3')-Ia	99.88	816/816	ABNMZI010000025.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.denovo.30, whole genome shotgun sequence	4217..5032	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EF015636	aph(3'')-Ib	100	803/804	ABNMZI010000025.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.denovo.30, whole genome shotgun sequence	6204..7006	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNMZI010000025.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.denovo.30, whole genome shotgun sequence	6204..7007	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNMZI010000025.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.denovo.30, whole genome shotgun sequence	6204..7007	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNMZI010000025.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.denovo.30, whole genome shotgun sequence	6204..7007	Streptomycin	AF321550	aac(6')-Iaa	97.49	438/438	ABNMZI010000039.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.guided.22, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMZI010000042.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.guided.29, whole genome shotgun sequence	1022..1858	Streptomycin	M28829	aph(3')-Ia	99.88	816/816	ABNMZI010000042.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.guided.29, whole genome shotgun sequence	2194..3009	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EF015636	aph(3'')-Ib	100	803/804	ABNMZI010000042.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.guided.29, whole genome shotgun sequence	220..1022	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNMZI010000042.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.guided.29, whole genome shotgun sequence	219..1022	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNMZI010000042.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.guided.29, whole genome shotgun sequence	219..1022	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNMZI010000042.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.guided.29, whole genome shotgun sequence	219..1022	Streptomycin	AF321550	blaTEM-1B	100	861/861	ABNMZI010000026.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.denovo.32, whole genome shotgun sequence	212..1072	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNMZI010000043.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.guided.31, whole genome shotgun sequence	253..1113	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(B)	99.92	1206/1206	ABNMZI010000024.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.denovo.28, whole genome shotgun sequence	4439..5644	Doxycycline, Tetracycline, Minocycline	AP000342	tet(B)	99.92	1206/1206	ABNMZI010000041.1 Salmonella enterica strain PNUSAS363069 SAMN36494075-rid18798993.guided.27, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AP000342																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMZI010000002.1	149837..150706	99.655	870	0						
GCA_032458595.1_PDT001818234.1_genomic.fna	Salmonella_enterica	0.5217	273.33 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMZE010000002.1 Salmonella enterica strain PNUSAS361198 SAMN36494086-rid18799023.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNMZE010000039.1 Salmonella enterica strain PNUSAS361198 SAMN36494086-rid18799023.guided.30, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNMZE010000023.1 Salmonella enterica strain PNUSAS361198 SAMN36494086-rid18799023.denovo.23, whole genome shotgun sequence	44715..45357	enterobacteriales	IncFII(S)	100	262 / 262	ABNMZE010000023.1 Salmonella enterica strain PNUSAS361198 SAMN36494086-rid18799023.denovo.23, whole genome shotgun sequence	29369..29630																																																avrA	ABNMZE010000005.1	175018..175886	100	869	0						
GCA_032458645.1_PDT001818229.1_genomic.fna	Salmonella_enterica	0.5208	367.612 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMZJ010000001.1 Salmonella enterica strain PNUSAS363311 SAMN36493977-rid18798983.denovo.01, whole genome shotgun sequence	384595..385032	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMZJ010000051.1 Salmonella enterica strain PNUSAS363311 SAMN36493977-rid18798983.guided.29, whole genome shotgun sequence	7238..7675	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMZJ010000009.1	150109..150979	99.196	871	0						
GCA_032458665.1_PDT001818228.1_genomic.fna	Salmonella_enterica	0.5208	682.831 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNMZK010000001.1 Salmonella enterica strain PNUSAS361197 SAMN36494085-rid18798973.denovo.01, whole genome shotgun sequence	508905..509342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNMZK010000020.1 Salmonella enterica strain PNUSAS361197 SAMN36494085-rid18798973.guided.17, whole genome shotgun sequence	2337..2774	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNMZK010000012.1 Salmonella enterica strain PNUSAS361197 SAMN36494085-rid18798973.denovo.12, whole genome shotgun sequence	34958..35491																																																						avrA	ABNMZK010000002.1	544613..545481	99.425	870	0						
GCA_032458685.1_PDT001818226.1_genomic.fna	Salmonella_enterica	0.5206	478.724 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMZM010000001.1 Salmonella enterica strain PNUSAS361967 SAMN36494079-rid18798953.denovo.01, whole genome shotgun sequence	706554..706991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMZM010000031.1 Salmonella enterica strain PNUSAS361967 SAMN36494079-rid18798953.guided.25, whole genome shotgun sequence	3258..3695	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMZM010000019.1 Salmonella enterica strain PNUSAS361967 SAMN36494079-rid18798953.denovo.19, whole genome shotgun sequence	6821..7463	enterobacteriales	IncFII(S)	100	262 / 262	ABNMZM010000022.1 Salmonella enterica strain PNUSAS361967 SAMN36494079-rid18798953.denovo.22, whole genome shotgun sequence	3388..3649		enterobacteriales	IncX1	98.93	374 / 374	ABNMZM010000014.1 Salmonella enterica strain PNUSAS361967 SAMN36494079-rid18798953.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNMZM010000002.1	553684..554553	99.54	870	0						
GCA_032458705.1_PDT001818224.1_genomic.fna	Salmonella_enterica	0.5207	382.351 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMZN010000001.1 Salmonella enterica strain PNUSAS363066 SAMN36494082-rid18798943.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMZN010000032.1 Salmonella enterica strain PNUSAS363066 SAMN36494082-rid18798943.guided.20, whole genome shotgun sequence	16001..16438	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMZN010000002.1	144915..145784	99.31	870	0						
GCA_032458725.1_PDT001818225.1_genomic.fna	Salmonella_enterica	0.5209	228.417 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMZO010000001.1 Salmonella enterica strain PNUSAS363079 SAMN36494078-rid18798333.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMZO010000043.1 Salmonella enterica strain PNUSAS363079 SAMN36494078-rid18798333.guided.31, whole genome shotgun sequence	22616..23053	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNMZO010000022.1 Salmonella enterica strain PNUSAS363079 SAMN36494078-rid18798333.denovo.22, whole genome shotgun sequence	34958..35491																																																						avrA	ABNMZO010000008.1	187941..188810	99.425	870	0						
GCA_032458745.1_PDT001818223.1_genomic.fna	Salmonella_enterica	0.519	289.167 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_70,sucA_9,thrA_2	213	4:i:1,2	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA12,aac(6')-Iaa,aadA12,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,lnu(F),lnu(F),floR,floR,qnrB19,qnrB19,sul2,sul2,sul2,sul2,tet(A),tet(A)	0		4	Col(pHAD28),ColRNAI,IncC,IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_70	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMZP010000001.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.denovo.01, whole genome shotgun sequence	458962..459399	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNMZP010000028.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.denovo.29, whole genome shotgun sequence	2501..3337	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMZP010000028.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.denovo.29, whole genome shotgun sequence	3337..4140	Streptomycin	AF321551	aadA12	100	792/792	ABNMZP010000029.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.denovo.32, whole genome shotgun sequence	1861..2652	Spectinomycin, Streptomycin	AY665771	aac(6')-Iaa	100	438/438	ABNMZP010000045.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.guided.30, whole genome shotgun sequence	20610..21047	Amikacin, Tobramycin	NC_003197	aadA12	100	792/792	ABNMZP010000047.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.guided.33, whole genome shotgun sequence	1182..1973	Spectinomycin, Streptomycin	AY665771	aph(6)-Id	100	837/837	ABNMZP010000048.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.guided.37, whole genome shotgun sequence	1536..2372	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNMZP010000048.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.guided.37, whole genome shotgun sequence	733..1536	Streptomycin	AF321551	aph(3'')-Ib	100	804/804	ABNMZP010000049.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.guided.39, whole genome shotgun sequence	1990..2793	Streptomycin	AF321551	aph(6)-Id	100	758/837	ABNMZP010000049.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.guided.39, whole genome shotgun sequence	2793..3550	Streptomycin	AF024602	aph(6)-Id	100	758/837	ABNMZP010000049.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.guided.39, whole genome shotgun sequence	2793..3550	Streptomycin	M28829	lnu(F)	99.88	822/822	ABNMZP010000029.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.denovo.32, whole genome shotgun sequence	3285..4106	Lincomycin	EU118119	lnu(F)	99.88	822/822	ABNMZP010000047.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.guided.33, whole genome shotgun sequence	2606..3427	Lincomycin	EU118119	floR	98.19	1214/1215	ABNMZP010000031.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.denovo.35, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNMZP010000050.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.guided.40, whole genome shotgun sequence	1352..2565	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNMZP010000034.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.denovo.41, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNMZP010000052.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.guided.43, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABNMZP010000028.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.denovo.29, whole genome shotgun sequence	4201..5016	Sulfamethoxazole	AY034138	sul2	100	672/816	ABNMZP010000048.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.guided.37, whole genome shotgun sequence	1..672	Sulfamethoxazole	AJ830710	sul2	100	672/816	ABNMZP010000048.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.guided.37, whole genome shotgun sequence	1..672	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNMZP010000049.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.guided.39, whole genome shotgun sequence	1114..1929	Sulfamethoxazole	AY034138	tet(A)	100	1240/1275	ABNMZP010000028.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.denovo.29, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNMZP010000051.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.guided.42, whole genome shotgun sequence	1339..2613	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																											enterobacteriales	Col(pHAD28)	100	131 / 131	ABNMZP010000034.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.denovo.41, whole genome shotgun sequence	1150..1280	enterobacteriales	ColRNAI	90.83	109 / 130	ABNMZP010000030.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.denovo.34, whole genome shotgun sequence	1016..1124		enterobacteriales	IncC	100	417 / 417	ABNMZP010000024.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.denovo.24, whole genome shotgun sequence	17493..17909		enterobacteriales	IncI2(Delta)	100	316 / 316	ABNMZP010000023.1 Salmonella enterica strain PNUSAS363077 SAMN36494073-rid18798933.denovo.23, whole genome shotgun sequence	28416..28731																																		avrA	ABNMZP010000003.1	174927..175796	99.885	870	0						
GCA_032458765.1_PDT001818222.1_genomic.fna	Salmonella_enterica	0.521	261.588 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNMZQ010000002.1 Salmonella enterica strain PNUSAS363065 SAMN36494076-rid18798923.denovo.02, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNMZQ010000045.1 Salmonella enterica strain PNUSAS363065 SAMN36494076-rid18798923.guided.26, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNMZQ010000021.1 Salmonella enterica strain PNUSAS363065 SAMN36494076-rid18798923.denovo.21, whole genome shotgun sequence	6323..6856																																																						avrA	ABNMZQ010000009.1	188016..188885	99.425	870	0						
GCA_032458785.1_PDT001818221.1_genomic.fna	Salmonella_enterica	0.5206	406.451 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMZR010000001.1 Salmonella enterica strain PNUSAS361968 SAMN36494081-rid18798913.denovo.01, whole genome shotgun sequence	542624..543061	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMZR010000029.1 Salmonella enterica strain PNUSAS361968 SAMN36494081-rid18798913.guided.19, whole genome shotgun sequence	2544..2981	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMZR010000021.1 Salmonella enterica strain PNUSAS361968 SAMN36494081-rid18798913.denovo.22, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABNMZR010000023.1 Salmonella enterica strain PNUSAS361968 SAMN36494081-rid18798913.denovo.24, whole genome shotgun sequence	3386..3647		enterobacteriales	IncX1	98.93	374 / 374	ABNMZR010000016.1 Salmonella enterica strain PNUSAS361968 SAMN36494081-rid18798913.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNMZR010000002.1	553480..554349	99.54	870	0						
GCA_032458815.1_PDT001818220.1_genomic.fna	Salmonella_enterica	0.5232	48.272 KB	32	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMZS010000020.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313545 SAMN36494083-rid18798323.denovo.020, whole genome shotgun sequence	12462..12899	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMZS010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313545 SAMN36494083-rid18798323.denovo.083, whole genome shotgun sequence	18442..19233	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMZS010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313545 SAMN36494083-rid18798323.denovo.083, whole genome shotgun sequence	18442..19233	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNMZS010000212.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313545 SAMN36494083-rid18798323.guided.056, whole genome shotgun sequence	14066..14503	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNMZS010000213.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313545 SAMN36494083-rid18798323.guided.110, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNMZS010000213.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313545 SAMN36494083-rid18798323.guided.110, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNMZS010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313545 SAMN36494083-rid18798323.denovo.083, whole genome shotgun sequence	17098..17937	Sulfamethoxazole	U12338	sul1	100	840/840	ABNMZS010000213.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313545 SAMN36494083-rid18798323.guided.110, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNMZS010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313545 SAMN36494083-rid18798323.denovo.083, whole genome shotgun sequence	3382..4581	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNMZS010000215.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313545 SAMN36494083-rid18798323.guided.142, whole genome shotgun sequence	1899..3098	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNMZS010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313545 SAMN36494083-rid18798323.denovo.136, whole genome shotgun sequence	5630..6189	enterobacteriales	IncX1	94.92	374 / 374	ABNMZS010000206.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313545 SAMN36494083-rid18798323.denovo.211, whole genome shotgun sequence	91..464																																																avrA	ABNMZS010000029.1	39699..40568	99.655	870	0						
GCA_032458835.1_PDT001818219.1_genomic.fna	Salmonella_enterica	0.5209	359.598 KB	4	aroC_180,dnaN_161,hemD_132,hisD_21,purE_12,sucA_13,thrA_4	532	16:d:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_180	dnaN	100	100	dnaN_161	hemD	100	100	hemD_132	hisD	100	100	hisD_21	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	16	d	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Barranquilla		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNMZT010000001.1 Salmonella enterica strain PNUSAS363314 SAMN36493978-rid18798903.denovo.01, whole genome shotgun sequence	582380..582817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNMZT010000032.1 Salmonella enterica strain PNUSAS363314 SAMN36493978-rid18798903.guided.23, whole genome shotgun sequence	16261..16698	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNMZT010000002.1	140485..141354	99.54	870	0						
GCA_032458855.1_PDT001818218.1_genomic.fna	Salmonella_enterica	0.5217	207.445 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNMZU010000001.1 Salmonella enterica strain PNUSAS361202 SAMN36493972-rid18798313.denovo.01, whole genome shotgun sequence	337830..338267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNMZU010000047.1 Salmonella enterica strain PNUSAS361202 SAMN36493972-rid18798313.guided.31, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNMZU010000003.1	171945..172813	99.77	870	0						
GCA_032458875.1_PDT001818217.1_genomic.fna	Salmonella_enterica	0.5213	433.187 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMZV010000001.1 Salmonella enterica strain PNUSAS363313 SAMN36493979-rid18798893.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMZV010000023.1 Salmonella enterica strain PNUSAS363313 SAMN36493979-rid18798893.guided.20, whole genome shotgun sequence	1630..2067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMZV010000014.1 Salmonella enterica strain PNUSAS363313 SAMN36493979-rid18798893.denovo.14, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNMZV010000017.1 Salmonella enterica strain PNUSAS363313 SAMN36493979-rid18798893.denovo.19, whole genome shotgun sequence	3446..3707																																																avrA	ABNMZV010000002.1	553636..554505	99.54	870	0						
GCA_032458895.1_PDT001818216.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNMZW010000001.1 Salmonella enterica strain PNUSAS363316 SAMN36493976-rid18798883.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNMZW010000022.1 Salmonella enterica strain PNUSAS363316 SAMN36493976-rid18798883.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNMZW010000016.1 Salmonella enterica strain PNUSAS363316 SAMN36493976-rid18798883.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNMZW010000017.1 Salmonella enterica strain PNUSAS363316 SAMN36493976-rid18798883.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABNMZW010000002.1	553636..554505	99.54	870	0						
GCA_032458915.1_PDT001818215.1_genomic.fna	Salmonella_enterica	0.5212	205.91 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNMZX010000002.1 Salmonella enterica strain PNUSAS363315 SAMN36493975-rid18798303.denovo.02, whole genome shotgun sequence	151390..151827	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNMZX010000051.1 Salmonella enterica strain PNUSAS363315 SAMN36493975-rid18798303.guided.33, whole genome shotgun sequence	16103..16540	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNMZX010000023.1 Salmonella enterica strain PNUSAS363315 SAMN36493975-rid18798303.denovo.23, whole genome shotgun sequence	3895..4537																																																																	
GCA_032458935.1_PDT001818214.1_genomic.fna	Salmonella_enterica	0.5209	297.886 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNMZY010000003.1 Salmonella enterica strain PNUSAS361205 SAMN36493971-rid18798873.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNMZY010000035.1 Salmonella enterica strain PNUSAS361205 SAMN36493971-rid18798873.guided.29, whole genome shotgun sequence	18164..18601	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNMZY010000021.1 Salmonella enterica strain PNUSAS361205 SAMN36493971-rid18798873.denovo.21, whole genome shotgun sequence	44678..45320	enterobacteriales	IncFII(S)	100	262 / 262	ABNMZY010000021.1 Salmonella enterica strain PNUSAS361205 SAMN36493971-rid18798873.denovo.21, whole genome shotgun sequence	29332..29593																																																avrA	ABNMZY010000001.1	446718..447586	100	869	0						
GCA_032465755.1_ASM3246575v1_genomic.fna	Salmonella_enterica	0.5223	4.725 MB	1	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	CP136145.1 Salmonella enterica subsp. enterica serovar Mbandaka strain JNQH948 chromosome, complete genome	2283176..2283613	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	CP136145.1	1005032..1005901	99.195	870	0						
GCA_032465775.1_ASM3246577v1_genomic.fna	Salmonella_enterica	0.5213	4.68 MB	1	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	CP136149.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH952 chromosome, complete genome	2393178..2393615	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	CP136151.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH952 plasmid pJNQH952-2, complete sequence	13410..14240	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	CP136151.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH952 plasmid pJNQH952-2, complete sequence	14246..15049	Streptomycin	AF321551	blaTEM-1B	100	861/861	CP136150.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH952 plasmid pJNQH952-1, complete sequence	30283..31143	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	CP136151.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH952 plasmid pJNQH952-2, complete sequence	11829..12689	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	CP136151.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH952 plasmid pJNQH952-2, complete sequence	15110..15925	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	99	603 / 643	CP136150.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH952 plasmid pJNQH952-1, complete sequence	1..603	enterobacteriales	IncFII(S)	100	262 / 262	CP136150.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH952 plasmid pJNQH952-1, complete sequence	15080..15341		enterobacteriales	IncX1	95.76	377 / 377	CP136151.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH952 plasmid pJNQH952-2, complete sequence	1730..2106																																									avrA	CP136149.1	1024260..1025129	99.54	870	0						
GCA_032465795.1_ASM3246579v1_genomic.fna	Salmonella_enterica	0.5217	4.745 MB	1	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aadA5,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaTEM-1B,blaTEM-1B,mph(A),qnrS1,sul1,sul2,sul2,dfrA17	1	gyrA_p.D87Y	4	IncB/O/K/Z,IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	CP136141.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 chromosome, complete genome	2093917..2094354	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	CP136142.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-1, complete sequence	66324..67160	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	CP136142.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-1, complete sequence	65522..66324	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	CP136142.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-1, complete sequence	65521..66324	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	CP136142.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-1, complete sequence	65521..66324	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	CP136142.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-1, complete sequence	65521..66324	Streptomycin	AF321550	aadA5	100	789/789	CP136142.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-1, complete sequence	57665..58453	Spectinomycin, Streptomycin	AF137361	aph(6)-Id	100	831/831	CP136144.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-3, complete sequence	13410..14240	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	CP136144.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-3, complete sequence	14246..15049	Streptomycin	AF321551	blaCTX-M-15	100	876/876	CP136142.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-1, complete sequence	11023..11898	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	CP136143.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-2, complete sequence	30283..31143	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	CP136144.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-3, complete sequence	11829..12689	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	CP136142.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-1, complete sequence	50063..50968	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	qnrS1	100	657/657	CP136142.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-1, complete sequence	16539..17195	Ciprofloxacin	AB187515	sul1	100	840/840	CP136142.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-1, complete sequence	56279..57118	Sulfamethoxazole	U12338	sul2	100	816/816	CP136142.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-1, complete sequence	69773..70588	Sulfamethoxazole	AY034138	sul2	100	816/816	CP136144.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-3, complete sequence	15110..15925	Sulfamethoxazole	AY034138	dfrA17	100	474/474	CP136142.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-1, complete sequence	58584..59057	Trimethoprim	FJ460238																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncB/O/K/Z	99.34	152 / 152	CP136142.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-1, complete sequence	126789..126940	enterobacteriales	IncFIB(S)	99	603 / 643	CP136143.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-2, complete sequence	1..603		enterobacteriales	IncFII(S)	100	262 / 262	CP136143.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-2, complete sequence	15080..15341		enterobacteriales	IncX1	95.76	377 / 377	CP136144.1 Salmonella enterica subsp. enterica serovar Enteritidis strain JNQH940 plasmid pJNQH940-3, complete sequence	1730..2106																																		avrA	CP136141.1	3496903..3497772	99.54	870	0						
GCA_032465835.1_ASM3246583v1_genomic.fna	Salmonella_enterica	0.5223	4.761 MB	1	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	16	aac(6')-Iaa,aac(3)-IId,aadA16,aph(6)-Id,aph(3'')-Ib,aac(6')-Ib-cr,blaTEM-1B,mph(A),floR,catA2,qnrB6,ARR-3,sul1,sul1,sul2,tet(A),dfrA27	2	gyrA_p.D87N,parC_p.T57S	2	IncFIB(K),IncX1	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	CP136146.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 chromosome, complete genome	2285178..2285615	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	49249..50109	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA16	99.65	846/846	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	63047..63892	Spectinomycin, Streptomycin	EU675686	aph(6)-Id	100	837/837	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	30145..30981	Streptomycin	M28829	aph(3'')-Ib	100	804/804	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	30981..31784	Streptomycin	AF321551	aac(6')-Ib-cr	100	600/600	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	65228..65827	Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin, Ciprofloxacin	DQ303918	blaTEM-1B	99.88	861/861	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	43417..44277	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	51168..52073	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	25796..27009	Chloramphenicol, Florfenicol	AF118107	catA2	96.11	642/642	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	35590..36231	Chloramphenicol	X53796	qnrB6	100	645/645	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	57695..58339	Ciprofloxacin	EF523819	ARR-3	100	453/453	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	64679..65131	Rifampicin	JF806499	sul1	100	840/840	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	61750..62589	Sulfamethoxazole	U12338	sul1	100	840/840	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	56284..57123	Sulfamethoxazole	U12338	sul2	100	816/816	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	31845..32660	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	27610..28884	Doxycycline, Tetracycline	AF534183	dfrA27	100	474/474	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	64073..64546	Trimethoprim	FJ459817																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(K)	99.82	560 / 560	CP136147.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-1, complete sequence	300..859	enterobacteriales	IncX1	98.93	374 / 374	CP136148.1 Salmonella enterica subsp. enterica serovar Thompson strain JNQH950 plasmid pJNQH950-2, complete sequence	7706..8079																																																avrA	CP136146.1	1056657..1057525	99.655	870	0						
GCA_032466135.1_PDT001923030.1_genomic.fna	Salmonella_enterica	0.5216	237.663 KB	6	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNAC010000001.1 Salmonella enterica strain PNUSAS389344 SAMN37705134-rid19658593.denovo.01, whole genome shotgun sequence	212433..212870	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNAC010000034.1 Salmonella enterica strain PNUSAS389344 SAMN37705134-rid19658593.guided.20, whole genome shotgun sequence	27576..28013	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNAC010000002.1	515769..516638	99.77	870	0						
GCA_032466155.1_PDT001923029.1_genomic.fna	Salmonella_enterica	0.5227	353.084 KB	5	aroC_22,dnaN_104,hemD_25,hisD_113,purE_12,sucA_83,thrA_4	308	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_25	hisD	100	100	hisD_113	purE	100	100	purE_12	sucA	100	100	sucA_83	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNNAD010000001.1 Salmonella enterica strain PNUSAS389345 SAMN37705135-rid19658583.denovo.01, whole genome shotgun sequence	456235..456672	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNNAD010000043.1 Salmonella enterica strain PNUSAS389345 SAMN37705135-rid19658583.guided.29, whole genome shotgun sequence	1561..1998	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNAD010000003.1	39624..40493	99.655	870	0						
GCA_032466565.1_PDT001922142.1_genomic.fna	Salmonella_enterica	0.521	390.668 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNAR010000001.1 Salmonella enterica strain PNUSAS389155 SAMN37704097-rid19649853.denovo.01, whole genome shotgun sequence	78007..78444	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNAR010000063.1 Salmonella enterica strain PNUSAS389155 SAMN37704097-rid19649853.guided.34, whole genome shotgun sequence	5412..5849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNNAR010000020.1 Salmonella enterica strain PNUSAS389155 SAMN37704097-rid19649853.denovo.20, whole genome shotgun sequence	12701..13343																																																						avrA	ABNNAR010000007.1	193739..194607	99.425	870	0						
GCA_032466595.1_PDT001922141.1_genomic.fna	Salmonella_enterica	0.5212	695.437 KB	3	aroC_13,dnaN_11,hemD_315,hisD_15,purE_12,sucA_15,thrA_4	1675	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_315	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNAQ010000001.1 Salmonella enterica strain PNUSAS388881 SAMN37704089-rid19648603.denovo.01, whole genome shotgun sequence	642440..642877	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNAQ010000020.1 Salmonella enterica strain PNUSAS388881 SAMN37704089-rid19648603.guided.13, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032466615.1_PDT001922143.1_genomic.fna	Salmonella_enterica	0.522	521.197 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNAP010000001.1 Salmonella enterica strain PNUSAS389157 SAMN37704099-rid19648613.denovo.01, whole genome shotgun sequence	609075..609512	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNAP010000028.1 Salmonella enterica strain PNUSAS389157 SAMN37704099-rid19648613.guided.20, whole genome shotgun sequence	389..826	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNAP010000002.1	563780..564649	99.77	870	0						
GCA_032466655.1_PDT001922140.1_genomic.fna	Salmonella_enterica	0.5211	425.285 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNAS010000002.1 Salmonella enterica strain PNUSAS389150 SAMN37704082-rid19649843.denovo.02, whole genome shotgun sequence	625307..625744	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNAS010000031.1 Salmonella enterica strain PNUSAS389150 SAMN37704082-rid19649843.guided.26, whole genome shotgun sequence	2342..2779	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNAS010000010.1 Salmonella enterica strain PNUSAS389150 SAMN37704082-rid19649843.denovo.10, whole genome shotgun sequence	37283..37925	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNAS010000010.1 Salmonella enterica strain PNUSAS389150 SAMN37704082-rid19649843.denovo.10, whole genome shotgun sequence	10978..11204																																																											
GCA_032466715.1_PDT001922138.1_genomic.fna	Salmonella_enterica	0.5215	328.723 KB	5	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNAU010000001.1 Salmonella enterica strain PNUSAS388930 SAMN37704095-rid19648583.denovo.01, whole genome shotgun sequence	346964..347401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNAU010000050.1 Salmonella enterica strain PNUSAS388930 SAMN37704095-rid19648583.guided.23, whole genome shotgun sequence	10359..10796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNAU010000005.1	179574..180443	99.54	870	0						
GCA_032466735.1_PDT001922139.1_genomic.fna	Salmonella_enterica	0.5223	436.755 KB	3	aroC_81,dnaN_283,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	909	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_283	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNAT010000001.1 Salmonella enterica strain PNUSAS388888 SAMN37704086-rid19648593.denovo.01, whole genome shotgun sequence	636227..636664	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNAT010000020.1 Salmonella enterica strain PNUSAS388888 SAMN37704086-rid19648593.guided.15, whole genome shotgun sequence	6865..7302	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNAT010000002.1	606364..607233	99.31	870	0						
GCA_032466755.1_PDT001922137.1_genomic.fna	Salmonella_enterica	0.5212	517.095 KB	4	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),pXuzhou21	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNNAV010000001.1 Salmonella enterica strain PNUSAS388925 SAMN37704079-rid19649933.denovo.01, whole genome shotgun sequence	696838..697275	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNNAV010000025.1 Salmonella enterica strain PNUSAS388925 SAMN37704079-rid19649933.guided.20, whole genome shotgun sequence	13377..13814	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNNAV010000014.1 Salmonella enterica strain PNUSAS388925 SAMN37704079-rid19649933.denovo.14, whole genome shotgun sequence	62211..62744	enterobacteriales	pXuzhou21	99.86	720 / 720	ABNNAV010000016.1 Salmonella enterica strain PNUSAS388925 SAMN37704079-rid19649933.denovo.16, whole genome shotgun sequence	23691..24410																																																avrA	ABNNAV010000003.1	508965..509834	99.54	870	0						
GCA_032466775.1_PDT001922136.1_genomic.fna	Salmonella_enterica	0.5205	714.221 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	3	aac(6')-Iaa,aac(3)-IIa,aac(6')-Iaa,aac(6')-Iaa,aac(3)-IIa,aac(3)-IIa,blaTEM-1B,blaTEM-1B	1	parC_p.T57S	1	IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNNAW010000001.1 Salmonella enterica strain PNUSAS389052 SAMN37704093-rid19648573.denovo.01, whole genome shotgun sequence	262868..263305	Amikacin, Tobramycin	NC_003197	aac(3)-IIa	100	802/861	ABNNAW010000017.1 Salmonella enterica strain PNUSAS389052 SAMN37704093-rid19648573.denovo.18, whole genome shotgun sequence	4904..5705	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin, Gentamicin, Tobramycin	X51534	aac(6')-Iaa	99.32	438/438	ABNNAW010000024.1 Salmonella enterica strain PNUSAS389052 SAMN37704093-rid19648573.guided.19, whole genome shotgun sequence	4127..4564	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNNAW010000025.1 Salmonella enterica strain PNUSAS389052 SAMN37704093-rid19648573.guided.20, whole genome shotgun sequence	4127..4564	Amikacin, Tobramycin	NC_003197	aac(3)-IIa	99.88	802/861	ABNNAW010000028.1 Salmonella enterica strain PNUSAS389052 SAMN37704093-rid19648573.guided.25, whole genome shotgun sequence	39..840	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin, Gentamicin, Tobramycin	X51534	aac(3)-IIa	100	802/861	ABNNAW010000029.1 Salmonella enterica strain PNUSAS389052 SAMN37704093-rid19648573.guided.26, whole genome shotgun sequence	39..840	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin, Gentamicin, Tobramycin	X51534	blaTEM-1B	100	861/861	ABNNAW010000017.1 Salmonella enterica strain PNUSAS389052 SAMN37704093-rid19648573.denovo.18, whole genome shotgun sequence	3902..4762	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNNAW010000030.1 Salmonella enterica strain PNUSAS389052 SAMN37704093-rid19648573.guided.27, whole genome shotgun sequence	599..1459	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncN	99.42	514 / 514	ABNNAW010000019.1 Salmonella enterica strain PNUSAS389052 SAMN37704093-rid19648573.denovo.22, whole genome shotgun sequence	535..1048																																																						avrA	ABNNAW010000003.1	560992..561862	99.656	871	0						
GCA_032466795.1_PDT001922135.1_genomic.fna	Salmonella_enterica	0.5215	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNAY010000001.1 Salmonella enterica strain PNUSAS388885 SAMN37704091-rid19649833.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNAY010000027.1 Salmonella enterica strain PNUSAS388885 SAMN37704091-rid19649833.guided.19, whole genome shotgun sequence	5274..5711	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNAY010000013.1 Salmonella enterica strain PNUSAS388885 SAMN37704091-rid19649833.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNNAY010000013.1 Salmonella enterica strain PNUSAS388885 SAMN37704091-rid19649833.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNNAY010000002.1	553636..554505	99.54	870	0						
GCA_032466815.1_PDT001922134.1_genomic.fna	Salmonella_enterica	0.5158	373.892 KB	6	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNNAX010000002.1 Salmonella enterica strain PNUSAS388886 SAMN37704092-rid19648563.denovo.02, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNNAX010000038.1 Salmonella enterica strain PNUSAS388886 SAMN37704092-rid19648563.guided.28, whole genome shotgun sequence	4349..4786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNAX010000012.1 Salmonella enterica strain PNUSAS388886 SAMN37704092-rid19648563.denovo.12, whole genome shotgun sequence	38587..39229																																																																	
GCA_032466825.1_PDT001922133.1_genomic.fna	Salmonella_enterica	0.5208	352.997 KB	6	aroC_42,dnaN_11,hemD_48,hisD_149,purE_12,sucA_13,thrA_4	1575	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNAZ010000002.1 Salmonella enterica strain PNUSAS388929 SAMN37704081-rid19649823.denovo.02, whole genome shotgun sequence	148198..148635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNAZ010000045.1 Salmonella enterica strain PNUSAS388929 SAMN37704081-rid19649823.guided.24, whole genome shotgun sequence	320..757	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNAZ010000014.1 Salmonella enterica strain PNUSAS388929 SAMN37704081-rid19649823.denovo.14, whole genome shotgun sequence	109645..110287																																																																	
GCA_032466855.1_PDT001922132.1_genomic.fna	Salmonella_enterica	0.5206	489.494 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNBB010000001.1 Salmonella enterica strain PNUSAS388937 SAMN37704078-rid19649813.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNBB010000025.1 Salmonella enterica strain PNUSAS388937 SAMN37704078-rid19649813.guided.18, whole genome shotgun sequence	1622..2059	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNBB010000011.1 Salmonella enterica strain PNUSAS388937 SAMN37704078-rid19649813.denovo.11, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNNBB010000011.1 Salmonella enterica strain PNUSAS388937 SAMN37704078-rid19649813.denovo.11, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNNBB010000012.1 Salmonella enterica strain PNUSAS388937 SAMN37704078-rid19649813.denovo.12, whole genome shotgun sequence	32004..32377																																									avrA	ABNNBB010000002.1	553629..554498	99.54	870	0						
GCA_032466875.1_PDT001922131.1_genomic.fna	Salmonella_enterica	0.5215	748.659 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNBA010000002.1 Salmonella enterica strain PNUSAS388887 SAMN37704096-rid19647223.denovo.02, whole genome shotgun sequence	108809..109246	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNBA010000024.1 Salmonella enterica strain PNUSAS388887 SAMN37704096-rid19647223.guided.17, whole genome shotgun sequence	9257..9694	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNBA010000012.1 Salmonella enterica strain PNUSAS388887 SAMN37704096-rid19647223.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNNBA010000012.1 Salmonella enterica strain PNUSAS388887 SAMN37704096-rid19647223.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABNNBA010000001.1	174991..175860	99.54	870	0						
GCA_032466895.1_PDT001922130.1_genomic.fna	Salmonella_enterica	0.5212	699.067 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNBC010000001.1 Salmonella enterica strain PNUSAS389051 SAMN37704094-rid19649803.denovo.01, whole genome shotgun sequence	427975..428412	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNBC010000021.1 Salmonella enterica strain PNUSAS389051 SAMN37704094-rid19649803.guided.18, whole genome shotgun sequence	1090..1527	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNBC010000003.1	160417..161286	99.54	870	0						
GCA_032466915.1_PDT001922129.1_genomic.fna	Salmonella_enterica	0.5209	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNBD010000001.1 Salmonella enterica strain PNUSAS388927 SAMN37704084-rid19648553.denovo.01, whole genome shotgun sequence	698253..698690	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNBD010000017.1 Salmonella enterica strain PNUSAS388927 SAMN37704084-rid19648553.guided.13, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNBD010000004.1	160411..161280	99.54	870	0						
GCA_032466935.1_PDT001922128.1_genomic.fna	Salmonella_enterica	0.5159	281.347 KB	7	aroC_30,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2309	50:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABNNBE010000024.1 Salmonella enterica strain PNUSAS388926 SAMN37704098-rid19649793.denovo.26, whole genome shotgun sequence	4989..5426	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABNNBE010000046.1 Salmonella enterica strain PNUSAS388926 SAMN37704098-rid19649793.guided.33, whole genome shotgun sequence	4356..4793	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032466955.1_PDT001922127.1_genomic.fna	Salmonella_enterica	0.5207	655.81 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNBF010000001.1 Salmonella enterica strain PNUSAS389038 SAMN37704085-rid19649783.denovo.01, whole genome shotgun sequence	420312..420749	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNBF010000050.1 Salmonella enterica strain PNUSAS389038 SAMN37704085-rid19649783.guided.22, whole genome shotgun sequence	83..520	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNBF010000003.1	504152..505022	99.196	871	0						
GCA_032466975.1_PDT001922126.1_genomic.fna	Salmonella_enterica	0.5213	720.971 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNBH010000001.1 Salmonella enterica strain PNUSAS388883 SAMN37704090-rid19648543.denovo.01, whole genome shotgun sequence	717884..718321	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNBH010000017.1 Salmonella enterica strain PNUSAS388883 SAMN37704090-rid19648543.guided.13, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNBH010000003.1	160423..161292	99.54	870	0						
GCA_032466995.1_PDT001922125.1_genomic.fna	Salmonella_enterica	0.5157	307.27 KB	5	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNNBG010000001.1 Salmonella enterica strain PNUSAS388882 SAMN37704087-rid19648533.denovo.01, whole genome shotgun sequence	197670..198107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNNBG010000060.1 Salmonella enterica strain PNUSAS388882 SAMN37704087-rid19648533.guided.40, whole genome shotgun sequence	4407..4844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNNBG010000012.1 Salmonella enterica strain PNUSAS388882 SAMN37704087-rid19648533.denovo.12, whole genome shotgun sequence	11196..11838	enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABNNBG010000030.1 Salmonella enterica strain PNUSAS388882 SAMN37704087-rid19648533.denovo.30, whole genome shotgun sequence	1011..1603																																																											
GCA_032467015.1_PDT001922122.1_genomic.fna	Salmonella_enterica	0.5213	517.914 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNBK010000001.1 Salmonella enterica strain PNUSAS389152 SAMN37704083-rid19649773.denovo.01, whole genome shotgun sequence	407341..407778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNBK010000026.1 Salmonella enterica strain PNUSAS389152 SAMN37704083-rid19649773.guided.19, whole genome shotgun sequence	1111..1548	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNBK010000002.1	609012..609880	99.195	870	0						
GCA_032467035.1_PDT001922124.1_genomic.fna	Salmonella_enterica	0.5212	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNBI010000002.1 Salmonella enterica strain PNUSAS389055 SAMN37704088-rid19648523.denovo.02, whole genome shotgun sequence	716098..716535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNBI010000021.1 Salmonella enterica strain PNUSAS389055 SAMN37704088-rid19648523.guided.17, whole genome shotgun sequence	1071..1508	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNBI010000004.1	160444..161313	99.54	870	0						
GCA_032467055.1_PDT001922123.1_genomic.fna	Salmonella_enterica	0.5166	348.745 KB	6	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNNBJ010000003.1 Salmonella enterica strain PNUSAS388928 SAMN37704080-rid19648513.denovo.03, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNNBJ010000038.1 Salmonella enterica strain PNUSAS388928 SAMN37704080-rid19648513.guided.28, whole genome shotgun sequence	4349..4786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNBJ010000011.1 Salmonella enterica strain PNUSAS388928 SAMN37704080-rid19648513.denovo.11, whole genome shotgun sequence	38587..39229	enterobacteriales	IncFII(Yp)	99.57	230 / 230	ABNNBJ010000018.1 Salmonella enterica strain PNUSAS388928 SAMN37704080-rid19648513.denovo.18, whole genome shotgun sequence	48569..48798																																																											
GCA_032467075.1_PDT001922120.1_genomic.fna	Salmonella_enterica	0.517	280.011 KB	7	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNNBL010000001.1 Salmonella enterica strain PNUSAS389143 SAMN37704070-rid19649763.denovo.01, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNNBL010000065.1 Salmonella enterica strain PNUSAS389143 SAMN37704070-rid19649763.guided.52, whole genome shotgun sequence	2088..2525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNNBL010000013.1 Salmonella enterica strain PNUSAS389143 SAMN37704070-rid19649763.denovo.13, whole genome shotgun sequence	117013..117655	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNNBL010000031.1 Salmonella enterica strain PNUSAS389143 SAMN37704070-rid19649763.denovo.31, whole genome shotgun sequence	11955..12537																																																											
GCA_032467085.1_PDT001922121.1_genomic.fna	Salmonella_enterica	0.5205	771.341 KB	2	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNBM010000001.1 Salmonella enterica strain PNUSAS389147 SAMN37704077-rid19647213.denovo.01, whole genome shotgun sequence	406056..406493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNBM010000061.1 Salmonella enterica strain PNUSAS389147 SAMN37704077-rid19647213.guided.39, whole genome shotgun sequence	704..1141	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNBM010000015.1 Salmonella enterica strain PNUSAS389147 SAMN37704077-rid19647213.denovo.15, whole genome shotgun sequence	5946..6588																																																						avrA	ABNNBM010000004.1	140173..141042	99.425	870	0						
GCA_032467115.1_PDT001922118.1_genomic.fna	Salmonella_enterica	0.522	530.901 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNNBO010000001.1 Salmonella enterica strain PNUSAS389170 SAMN37704068-rid19649753.denovo.01, whole genome shotgun sequence	113341..113778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNNBO010000019.1 Salmonella enterica strain PNUSAS389170 SAMN37704068-rid19649753.guided.15, whole genome shotgun sequence	6865..7302	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNNBO010000011.1 Salmonella enterica strain PNUSAS389170 SAMN37704068-rid19649753.denovo.11, whole genome shotgun sequence	70746..70887																																																						avrA	ABNNBO010000002.1	553309..554167	98.506	870	0						
GCA_032467135.1_PDT001922119.1_genomic.fna	Salmonella_enterica	0.5218	641.048 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNBN010000001.1 Salmonella enterica strain PNUSAS389141 SAMN37704072-rid19648503.denovo.01, whole genome shotgun sequence	510590..511027	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNBN010000024.1 Salmonella enterica strain PNUSAS389141 SAMN37704072-rid19648503.guided.21, whole genome shotgun sequence	2064..2501	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNBN010000003.1	544643..545511	99.425	870	0						
GCA_032467155.1_PDT001922117.1_genomic.fna	Salmonella_enterica	0.5209	378.865 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNBR010000002.1 Salmonella enterica strain PNUSAS389121 SAMN37704061-rid19649743.denovo.02, whole genome shotgun sequence	383528..383965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNBR010000043.1 Salmonella enterica strain PNUSAS389121 SAMN37704061-rid19649743.guided.28, whole genome shotgun sequence	4453..4890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNBR010000009.1	150789..151659	99.196	871	0						
GCA_032467175.1_PDT001922115.1_genomic.fna	Salmonella_enterica	0.5206	401.348 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNBQ010000003.1 Salmonella enterica strain PNUSAS389149 SAMN37704067-rid19648483.denovo.03, whole genome shotgun sequence	351496..351933	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNNBQ010000066.1 Salmonella enterica strain PNUSAS389149 SAMN37704067-rid19648483.guided.50, whole genome shotgun sequence	128..565	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNBQ010000067.1 Salmonella enterica strain PNUSAS389149 SAMN37704067-rid19648483.guided.51, whole genome shotgun sequence	128..565	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNNBQ010000022.1 Salmonella enterica strain PNUSAS389149 SAMN37704067-rid19648483.denovo.22, whole genome shotgun sequence	12696..13338	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNNBQ010000024.1 Salmonella enterica strain PNUSAS389149 SAMN37704067-rid19648483.denovo.24, whole genome shotgun sequence	20816..21408																																																avrA	ABNNBQ010000009.1	143405..144273	99.425	870	0						
GCA_032467195.1_PDT001922116.1_genomic.fna	Salmonella_enterica	0.5213	709.499 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNBP010000001.1 Salmonella enterica strain PNUSAS389171 SAMN37704071-rid19648493.denovo.01, whole genome shotgun sequence	268870..269307	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.74	378/438	ABNNBP010000023.1 Salmonella enterica strain PNUSAS389171 SAMN37704071-rid19648493.guided.19, whole genome shotgun sequence	1..378	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNBP010000003.1	160628..161497	99.54	870	0						
GCA_032467215.1_PDT001922114.1_genomic.fna	Salmonella_enterica	0.5224	339.347 KB	5	aroC_127,dnaN_81,hemD_111,hisD_564,purE_39,sucA_226,thrA_41	2225	13:b:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_127	dnaN	100	100	dnaN_81	hemD	100	100	hemD_111	hisD	100	100	hisD_564	purE	100	100	purE_39	sucA	100	100	sucA_226	thrA	100	100	thrA_41	13	b	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Durham		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNBS010000001.1 Salmonella enterica strain PNUSAS389042 SAMN37704053-rid19648473.denovo.01, whole genome shotgun sequence	307628..308065	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNBS010000038.1 Salmonella enterica strain PNUSAS389042 SAMN37704053-rid19648473.guided.27, whole genome shotgun sequence	2240..2677	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNBS010000004.1	69858..70727	98.966	870	0						
GCA_032467235.1_PDT001922113.1_genomic.fna	Salmonella_enterica	0.5209	699.215 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNBT010000001.1 Salmonella enterica strain PNUSAS389044 SAMN37704066-rid19649733.denovo.01, whole genome shotgun sequence	596395..596832	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNBT010000019.1 Salmonella enterica strain PNUSAS389044 SAMN37704066-rid19649733.guided.14, whole genome shotgun sequence	3113..3550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNNBT010000010.1 Salmonella enterica strain PNUSAS389044 SAMN37704066-rid19649733.denovo.10, whole genome shotgun sequence	34957..35490																																																						avrA	ABNNBT010000002.1	544643..545511	99.425	870	0						
GCA_032467255.1_PDT001922112.1_genomic.fna	Salmonella_enterica	0.5219	230.143 KB	7	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNBU010000006.1 Salmonella enterica strain PNUSAS389079 SAMN37704064-rid19649723.denovo.06, whole genome shotgun sequence	139980..140417	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNBU010000041.1 Salmonella enterica strain PNUSAS389079 SAMN37704064-rid19649723.guided.34, whole genome shotgun sequence	1103..1540	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNBU010000012.1 Salmonella enterica strain PNUSAS389079 SAMN37704064-rid19649723.denovo.12, whole genome shotgun sequence	38587..39229																																																						avrA	ABNNBU010000001.1	411112..411981	99.77	870	0						
GCA_032467275.1_PDT001922110.1_genomic.fna	Salmonella_enterica	0.522	682.841 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNBW010000001.1 Salmonella enterica strain PNUSAS389124 SAMN37704056-rid19649713.denovo.01, whole genome shotgun sequence	510631..511068	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNBW010000023.1 Salmonella enterica strain PNUSAS389124 SAMN37704056-rid19649713.guided.20, whole genome shotgun sequence	1480..1917	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNBW010000004.1	556168..557036	99.425	870	0						
GCA_032467295.1_PDT001922111.1_genomic.fna	Salmonella_enterica	0.5203	598.747 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNBV010000002.1 Salmonella enterica strain PNUSAS389144 SAMN37704074-rid19648463.denovo.02, whole genome shotgun sequence	595386..595823	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNBV010000039.1 Salmonella enterica strain PNUSAS389144 SAMN37704074-rid19648463.guided.28, whole genome shotgun sequence	1539..1976	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.07	643 / 643	ABNNBV010000012.1 Salmonella enterica strain PNUSAS389144 SAMN37704074-rid19648463.denovo.12, whole genome shotgun sequence	91387..92029																																																						avrA	ABNNBV010000001.1	549985..550854	99.425	870	0						
GCA_032467315.1_PDT001922107.1_genomic.fna	Salmonella_enterica	0.5206	384.204 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNCA010000002.1 Salmonella enterica strain PNUSAS388970 SAMN37704062-rid19649693.denovo.02, whole genome shotgun sequence	619873..620310	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNCA010000066.1 Salmonella enterica strain PNUSAS388970 SAMN37704062-rid19649693.guided.33, whole genome shotgun sequence	778..1215	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNNCA010000022.1 Salmonella enterica strain PNUSAS388970 SAMN37704062-rid19649693.denovo.23, whole genome shotgun sequence	12645..13287	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNNCA010000027.1 Salmonella enterica strain PNUSAS388970 SAMN37704062-rid19649693.denovo.28, whole genome shotgun sequence	21066..21658																																																avrA	ABNNCA010000007.1	193751..194619	99.425	870	0						
GCA_032467335.1_PDT001922108.1_genomic.fna	Salmonella_enterica	0.5211	736.973 KB	3	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNBZ010000001.1 Salmonella enterica strain PNUSAS388933 SAMN37704063-rid19649703.denovo.01, whole genome shotgun sequence	829970..830407	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNBZ010000022.1 Salmonella enterica strain PNUSAS388933 SAMN37704063-rid19649703.guided.15, whole genome shotgun sequence	9806..10243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNBZ010000002.1	621478..622347	99.425	870	0						
GCA_032467355.1_PDT001922105.1_genomic.fna	Salmonella_enterica	0.5153	370.957 KB	6	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	1	parC_p.T57S	4	IncFIB(pB171),IncFII(S),IncFII(SARC14),IncI(Gamma)	aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNNCB010000008.1 Salmonella enterica strain PNUSAS389043 SAMN37704052-rid19649683.denovo.08, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.75	400/438	ABNNCB010000049.1 Salmonella enterica strain PNUSAS389043 SAMN37704052-rid19649683.guided.37, whole genome shotgun sequence	2..401	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNNCB010000017.1 Salmonella enterica strain PNUSAS389043 SAMN37704052-rid19649683.denovo.17, whole genome shotgun sequence	31144..32289	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNNCB010000044.1 Salmonella enterica strain PNUSAS389043 SAMN37704052-rid19649683.guided.29, whole genome shotgun sequence	2010..3155	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNCB010000014.1 Salmonella enterica strain PNUSAS389043 SAMN37704052-rid19649683.denovo.14, whole genome shotgun sequence	38587..39229	enterobacteriales	IncFII(S)	94.82	251 / 262	ABNNCB010000019.1 Salmonella enterica strain PNUSAS389043 SAMN37704052-rid19649683.denovo.19, whole genome shotgun sequence	20263..20510		enterobacteriales	IncFII(SARC14)	95.52	446 / 445	ABNNCB010000019.1 Salmonella enterica strain PNUSAS389043 SAMN37704052-rid19649683.denovo.19, whole genome shotgun sequence	19559..20003		enterobacteriales	IncI(Gamma)	100	137 / 141	ABNNCB010000017.1 Salmonella enterica strain PNUSAS389043 SAMN37704052-rid19649683.denovo.17, whole genome shotgun sequence	70375..70511																																													
GCA_032467375.1_PDT001922106.1_genomic.fna	Salmonella_enterica	0.5205	396.48 KB	5	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNBY010000001.1 Salmonella enterica strain PNUSAS389040 SAMN37704057-rid19648443.denovo.01, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNBY010000038.1 Salmonella enterica strain PNUSAS389040 SAMN37704057-rid19648443.guided.27, whole genome shotgun sequence	4157..4594	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNBY010000022.1 Salmonella enterica strain PNUSAS389040 SAMN37704057-rid19648443.denovo.22, whole genome shotgun sequence	11254..11896																																																						avrA	ABNNBY010000006.1	145469..146338	99.77	870	0						
GCA_032467395.1_PDT001922109.1_genomic.fna	Salmonella_enterica	0.5212	208.62 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNBX010000002.1 Salmonella enterica strain PNUSAS389146 SAMN37704076-rid19648453.denovo.02, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNBX010000049.1 Salmonella enterica strain PNUSAS389146 SAMN37704076-rid19648453.guided.37, whole genome shotgun sequence	746..1183	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNBX010000017.1 Salmonella enterica strain PNUSAS389146 SAMN37704076-rid19648453.denovo.17, whole genome shotgun sequence	37311..37953	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNBX010000017.1 Salmonella enterica strain PNUSAS389146 SAMN37704076-rid19648453.denovo.17, whole genome shotgun sequence	10979..11205																																																avrA	ABNNBX010000004.1	174640..175508	99.77	870	0						
GCA_032467415.1_PDT001922104.1_genomic.fna	Salmonella_enterica	0.5212	642.983 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNCC010000001.1 Salmonella enterica strain PNUSAS389148 SAMN37704069-rid19648433.denovo.01, whole genome shotgun sequence	268870..269307	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNCC010000024.1 Salmonella enterica strain PNUSAS389148 SAMN37704069-rid19648433.guided.20, whole genome shotgun sequence	630..1067	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNNCC010000025.1 Salmonella enterica strain PNUSAS389148 SAMN37704069-rid19648433.guided.21, whole genome shotgun sequence	630..1067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																		avrA	ABNNCC010000003.1	548111..548980	99.54	870	0						
GCA_032467435.1_PDT001922102.1_genomic.fna	Salmonella_enterica	0.5209	290.055 KB	6	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNCH010000001.1 Salmonella enterica strain PNUSAS388935 SAMN37704065-rid19649663.denovo.01, whole genome shotgun sequence	239350..239787	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNCH010000041.1 Salmonella enterica strain PNUSAS388935 SAMN37704065-rid19649663.guided.29, whole genome shotgun sequence	1199..1636	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNCH010000014.1 Salmonella enterica strain PNUSAS388935 SAMN37704065-rid19649663.denovo.14, whole genome shotgun sequence	108495..109137	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNCH010000025.1 Salmonella enterica strain PNUSAS388935 SAMN37704065-rid19649663.denovo.25, whole genome shotgun sequence	10976..11202																																																											
GCA_032467445.1_PDT001922103.1_genomic.fna	Salmonella_enterica	0.5222	396.104 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNCD010000001.1 Salmonella enterica strain PNUSAS389123 SAMN37704060-rid19649673.denovo.01, whole genome shotgun sequence	170812..171249	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNCD010000040.1 Salmonella enterica strain PNUSAS389123 SAMN37704060-rid19649673.guided.31, whole genome shotgun sequence	240..677	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.97	116 / 131	ABNNCD010000026.1 Salmonella enterica strain PNUSAS389123 SAMN37704060-rid19649673.denovo.27, whole genome shotgun sequence	513..628																																																						avrA	ABNNCD010000003.1	95194..96063	99.31	870	0						
GCA_032467475.1_PDT001922101.1_genomic.fna	Salmonella_enterica	0.5211	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNCG010000001.1 Salmonella enterica strain PNUSAS388906 SAMN37704075-rid19648423.denovo.01, whole genome shotgun sequence	702620..703057	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNCG010000017.1 Salmonella enterica strain PNUSAS388906 SAMN37704075-rid19648423.guided.10, whole genome shotgun sequence	6865..7302	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNCG010000004.1	160544..161413	99.54	870	0						
GCA_032467495.1_PDT001922099.1_genomic.fna	Salmonella_enterica	0.5175	250.522 KB	6	aroC_488,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2058	48:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_488	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:z4,z32:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABNNCE010000027.1 Salmonella enterica strain PNUSAS389122 SAMN37704058-rid19648413.denovo.27, whole genome shotgun sequence	6573..7010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABNNCE010000043.1 Salmonella enterica strain PNUSAS389122 SAMN37704058-rid19648413.guided.31, whole genome shotgun sequence	1744..2181	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNCE010000010.1 Salmonella enterica strain PNUSAS389122 SAMN37704058-rid19648413.denovo.10, whole genome shotgun sequence	38587..39229																																																																	
GCA_032467515.1_PDT001922100.1_genomic.fna	Salmonella_enterica	0.5221	473.72 KB	4	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNCF010000001.1 Salmonella enterica strain PNUSAS389142 SAMN37704073-rid19649653.denovo.01, whole genome shotgun sequence	261460..261897	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNCF010000028.1 Salmonella enterica strain PNUSAS389142 SAMN37704073-rid19649653.guided.23, whole genome shotgun sequence	2279..2716	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNCF010000002.1	510215..511081	99.08	870	0						
GCA_032467535.1_PDT001922098.1_genomic.fna	Salmonella_enterica	0.5226	505.575 KB	3	aroC_543,dnaN_69,hemD_101,hisD_12,purE_370,sucA_130,thrA_347	2553	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_543	dnaN	100	100	dnaN_69	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_370	sucA	100	100	sucA_130	thrA	100	100	thrA_347	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNNCI010000001.1 Salmonella enterica strain PNUSAS389041 SAMN37704059-rid19649643.denovo.01, whole genome shotgun sequence	539974..540411	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNNCI010000020.1 Salmonella enterica strain PNUSAS389041 SAMN37704059-rid19649643.guided.16, whole genome shotgun sequence	1088..1525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNCI010000002.1	514136..515005	99.31	870	0						
GCA_032467555.1_PDT001922097.1_genomic.fna	Salmonella_enterica	0.5214	248.973 KB	7	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNCJ010000007.1 Salmonella enterica strain PNUSAS389158 SAMN37704054-rid19649633.denovo.07, whole genome shotgun sequence	83694..84131	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNCJ010000045.1 Salmonella enterica strain PNUSAS389158 SAMN37704054-rid19649633.guided.40, whole genome shotgun sequence	630..1067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNCJ010000025.1 Salmonella enterica strain PNUSAS389158 SAMN37704054-rid19649633.denovo.25, whole genome shotgun sequence	6015..6657	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNCJ010000030.1 Salmonella enterica strain PNUSAS389158 SAMN37704054-rid19649633.denovo.30, whole genome shotgun sequence	10978..11204																																																											
GCA_032467575.1_PDT001922096.1_genomic.fna	Salmonella_enterica	0.5206	384.204 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNCK010000008.1 Salmonella enterica strain PNUSAS389125 SAMN37704055-rid19648403.denovo.08, whole genome shotgun sequence	78007..78444	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNCK010000064.1 Salmonella enterica strain PNUSAS389125 SAMN37704055-rid19648403.guided.48, whole genome shotgun sequence	630..1067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNNCK010000022.1 Salmonella enterica strain PNUSAS389125 SAMN37704055-rid19648403.denovo.22, whole genome shotgun sequence	12646..13288	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNNCK010000025.1 Salmonella enterica strain PNUSAS389125 SAMN37704055-rid19648403.denovo.25, whole genome shotgun sequence	21066..21658																																																avrA	ABNNCK010000009.1	140571..141439	99.425	870	0						
GCA_032467595.1_PDT001922094.1_genomic.fna	Salmonella_enterica	0.5212	436.63 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNCP010000002.1 Salmonella enterica strain PNUSAS389046 SAMN37704038-rid19648393.denovo.02, whole genome shotgun sequence	442507..442944	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNCP010000039.1 Salmonella enterica strain PNUSAS389046 SAMN37704038-rid19648393.guided.22, whole genome shotgun sequence	6824..7261	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNCP010000001.1	514743..515611	99.195	870	0						
GCA_032467615.1_PDT001922093.1_genomic.fna	Salmonella_enterica	0.5212	720.971 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNCN010000001.1 Salmonella enterica strain PNUSAS389108 SAMN37704046-rid19649613.denovo.01, whole genome shotgun sequence	707322..707759	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNCN010000018.1 Salmonella enterica strain PNUSAS389108 SAMN37704046-rid19649613.guided.15, whole genome shotgun sequence	704..1141	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNCN010000003.1	160020..160889	99.54	870	0						
GCA_032467635.1_PDT001922095.1_genomic.fna	Salmonella_enterica	0.5215	1.229 MB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNCL010000001.1 Salmonella enterica strain PNUSAS388903 SAMN37704035-rid19649623.denovo.01, whole genome shotgun sequence	717883..718320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNCL010000020.1 Salmonella enterica strain PNUSAS388903 SAMN37704035-rid19649623.guided.15, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	95.65	138 / 142	ABNNCL010000007.1 Salmonella enterica strain PNUSAS388903 SAMN37704035-rid19649623.denovo.07, whole genome shotgun sequence	72329..72464																																																						avrA	ABNNCL010000002.1	160310..161179	99.54	870	0						
GCA_032467655.1_PDT001922091.1_genomic.fna	Salmonella_enterica	0.5204	430.357 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNCM010000001.1 Salmonella enterica strain PNUSAS389045 SAMN37704040-rid19648383.denovo.01, whole genome shotgun sequence	442507..442944	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNCM010000042.1 Salmonella enterica strain PNUSAS389045 SAMN37704040-rid19648383.guided.20, whole genome shotgun sequence	4122..4559	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNNCM010000010.1 Salmonella enterica strain PNUSAS389045 SAMN37704040-rid19648383.denovo.10, whole genome shotgun sequence	145073..145715																																																						avrA	ABNNCM010000002.1	514743..515611	99.195	870	0						
GCA_032467675.1_PDT001922092.1_genomic.fna	Salmonella_enterica	0.5213	207.445 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNCO010000001.1 Salmonella enterica strain PNUSAS388960 SAMN37704033-rid19649603.denovo.01, whole genome shotgun sequence	381661..382098	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNCO010000052.1 Salmonella enterica strain PNUSAS388960 SAMN37704033-rid19649603.guided.37, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNCO010000020.1 Salmonella enterica strain PNUSAS388960 SAMN37704033-rid19649603.denovo.20, whole genome shotgun sequence	60065..60707	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNCO010000029.1 Salmonella enterica strain PNUSAS388960 SAMN37704033-rid19649603.denovo.29, whole genome shotgun sequence	10978..11204																																																avrA	ABNNCO010000004.1	175007..175875	99.77	870	0						
GCA_032467695.1_PDT001922089.1_genomic.fna	Salmonella_enterica	0.5216	317.48 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNCR010000001.1 Salmonella enterica strain PNUSAS388905 SAMN37704037-rid19648373.denovo.01, whole genome shotgun sequence	170926..171363	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNCR010000038.1 Salmonella enterica strain PNUSAS388905 SAMN37704037-rid19648373.guided.21, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNCR010000002.1	121197..122066	99.31	870	0						
GCA_032467715.1_PDT001922088.1_genomic.fna	Salmonella_enterica	0.5167	280.058 KB	7	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNNCS010000009.1 Salmonella enterica strain PNUSAS389049 SAMN37704048-rid19649583.denovo.09, whole genome shotgun sequence	4366..4803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNNCS010000060.1 Salmonella enterica strain PNUSAS389049 SAMN37704048-rid19649583.guided.49, whole genome shotgun sequence	704..1141	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNNCS010000019.1 Salmonella enterica strain PNUSAS389049 SAMN37704048-rid19649583.denovo.19, whole genome shotgun sequence	72673..73315	enterobacteriales	IncFII(pMET)	90.92	584 / 577	ABNNCS010000031.1 Salmonella enterica strain PNUSAS389049 SAMN37704048-rid19649583.denovo.31, whole genome shotgun sequence	18543..19125																																																											
GCA_032467735.1_PDT001922090.1_genomic.fna	Salmonella_enterica	0.5219	594.98 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNCQ010000001.1 Salmonella enterica strain PNUSAS388908 SAMN37704043-rid19649593.denovo.01, whole genome shotgun sequence	639284..639721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNCQ010000034.1 Salmonella enterica strain PNUSAS388908 SAMN37704043-rid19649593.guided.15, whole genome shotgun sequence	13373..13810	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNCQ010000003.1	498766..499634	99.425	870	0						
GCA_032467755.1_PDT001922086.1_genomic.fna	Salmonella_enterica	0.5222	420.385 KB	5	aroC_52,dnaN_3,hemD_40,hisD_51,purE_44,sucA_45,thrA_3	101	4:r:l,w	2	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_52	dnaN	100	100	dnaN_3	hemD	100	100	hemD_40	hisD	100	100	hisD_51	purE	100	100	purE_44	sucA	100	100	sucA_45	thrA	100	100	thrA_3	4	r	l,w	Salmonella enterica subspecies enterica (subspecies I)	Bochum		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNCV010000002.1 Salmonella enterica strain PNUSAS389047 SAMN37704042-rid19648363.denovo.02, whole genome shotgun sequence	37912..38349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNCV010000029.1 Salmonella enterica strain PNUSAS389047 SAMN37704042-rid19648363.guided.21, whole genome shotgun sequence	9224..9661	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNCV010000030.1 Salmonella enterica strain PNUSAS389047 SAMN37704042-rid19648363.guided.22, whole genome shotgun sequence	9224..9661	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNNCV010000006.1 Salmonella enterica strain PNUSAS389047 SAMN37704042-rid19648363.denovo.06, whole genome shotgun sequence	143406..143828	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNNCV010000035.1 Salmonella enterica strain PNUSAS389047 SAMN37704042-rid19648363.guided.28, whole genome shotgun sequence	81..503	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNCV010000010.1	131412..132281	98.966	870	0						
GCA_032467775.1_PDT001922084.1_genomic.fna	Salmonella_enterica	0.5217	670.579 KB	4	aroC_11,dnaN_10,hemD_25,hisD_118,purE_10,sucA_13,thrA_4	343	4:e,h:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_118	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNCW010000004.1 Salmonella enterica strain PNUSAS389114 SAMN37704049-rid19648353.denovo.04, whole genome shotgun sequence	260622..261059	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNCW010000023.1 Salmonella enterica strain PNUSAS389114 SAMN37704049-rid19648353.guided.16, whole genome shotgun sequence	9846..10283	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNCW010000003.1	168758..169627	99.54	870	0						
GCA_032467795.1_PDT001922079.1_genomic.fna	Salmonella_enterica	0.5157	191.705 KB	8	aroC_483,dnaN_28,hemD_355,hisD_454,purE_22,sucA_29,thrA_30	2505	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNNDB010000007.1 Salmonella enterica strain PNUSAS389145 SAMN37704032-rid19648333.denovo.07, whole genome shotgun sequence	132977..133414	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNNDB010000086.1 Salmonella enterica strain PNUSAS389145 SAMN37704032-rid19648333.guided.59, whole genome shotgun sequence	630..1067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032467815.1_PDT001922078.1_genomic.fna	Salmonella_enterica	0.5222	583.462 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNNDF010000003.1 Salmonella enterica strain PNUSAS388993 SAMN37704031-rid19649533.denovo.03, whole genome shotgun sequence	145407..145844	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNNDF010000021.1 Salmonella enterica strain PNUSAS388993 SAMN37704031-rid19649533.guided.16, whole genome shotgun sequence	9232..9669	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNDF010000004.1	553761..554630	99.77	870	0						
GCA_032467835.1_PDT001922076.1_genomic.fna	Salmonella_enterica	0.522	299.747 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNDD010000001.1 Salmonella enterica strain PNUSAS388904 SAMN37704034-rid19648323.denovo.01, whole genome shotgun sequence	381670..382107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNDD010000035.1 Salmonella enterica strain PNUSAS388904 SAMN37704034-rid19648323.guided.25, whole genome shotgun sequence	15439..15876	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNDD010000003.1	209342..210210	99.77	870	0						
GCA_032467855.1_PDT001922074.1_genomic.fna	Salmonella_enterica	0.5226	354.932 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNNDG010000001.1 Salmonella enterica strain PNUSAS389011 SAMN37704017-rid19648313.denovo.01, whole genome shotgun sequence	405412..405849	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNNDG010000035.1 Salmonella enterica strain PNUSAS389011 SAMN37704017-rid19648313.guided.21, whole genome shotgun sequence	9224..9661	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNNDG010000023.1 Salmonella enterica strain PNUSAS389011 SAMN37704017-rid19648313.denovo.25, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNNDG010000024.1 Salmonella enterica strain PNUSAS389011 SAMN37704017-rid19648313.denovo.26, whole genome shotgun sequence	2528..2639																																																avrA	ABNNDG010000002.1	557167..558035	99.425	870	0						
GCA_032467875.1_PDT001922075.1_genomic.fna	Salmonella_enterica	0.517	307.471 KB	6	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNNDE010000001.1 Salmonella enterica strain PNUSAS389050 SAMN37704039-rid19649513.denovo.01, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNNDE010000056.1 Salmonella enterica strain PNUSAS389050 SAMN37704039-rid19649513.guided.47, whole genome shotgun sequence	1477..1914	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNNDE010000011.1 Salmonella enterica strain PNUSAS389050 SAMN37704039-rid19649513.denovo.11, whole genome shotgun sequence	157668..158310																																																																	
GCA_032467895.1_PDT001922073.1_genomic.fna	Salmonella_enterica	0.5219	581.478 KB	3	aroC_22,dnaN_11,hemD_25,hisD_72,purE_655,sucA_123,thrA_4	3253	9:a:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_655	sucA	100	100	sucA_123	thrA	100	100	thrA_4	9	a	1,7	Salmonella enterica subspecies enterica (subspecies I)	Saarbruecken		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNDH010000001.1 Salmonella enterica strain PNUSAS388916 SAMN37704010-rid19649503.denovo.01, whole genome shotgun sequence	625110..625547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNDH010000022.1 Salmonella enterica strain PNUSAS388916 SAMN37704010-rid19649503.guided.17, whole genome shotgun sequence	12488..12925	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNDH010000003.1	139506..140375	99.425	870	0						
GCA_032490765.1_PDT001922060.1_genomic.fna	Salmonella_enterica	0.5203	503.349 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNNDX010000001.1 Salmonella enterica strain PNUSAS388958 SAMN37704002-rid19649903.denovo.01, whole genome shotgun sequence	1371744..1372181	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNNDX010000019.1 Salmonella enterica strain PNUSAS388958 SAMN37704002-rid19649903.guided.14, whole genome shotgun sequence	7798..8235	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNNDX010000012.1 Salmonella enterica strain PNUSAS388958 SAMN37704002-rid19649903.denovo.12, whole genome shotgun sequence	71785..71926																																																						avrA	ABNNDX010000002.1	179088..179957	99.425	870	0						
GCA_032490775.1_PDT001922062.1_genomic.fna	Salmonella_enterica	0.5219	191.426 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNDS010000002.1 Salmonella enterica strain PNUSAS388914 SAMN37704012-rid19648243.denovo.02, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNDS010000041.1 Salmonella enterica strain PNUSAS388914 SAMN37704012-rid19648243.guided.20, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNDS010000003.1	194815..195683	99.77	870	0						
GCA_032490805.1_PDT001922059.1_genomic.fna	Salmonella_enterica	0.5212	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNDR010000001.1 Salmonella enterica strain PNUSAS388988 SAMN37704011-rid19648223.denovo.01, whole genome shotgun sequence	717104..717541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNDR010000018.1 Salmonella enterica strain PNUSAS388988 SAMN37704011-rid19648223.guided.14, whole genome shotgun sequence	630..1067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNDR010000004.1	160310..161179	99.54	870	0						
GCA_032490825.1_PDT001922063.1_genomic.fna	Salmonella_enterica	0.5172	228.271 KB	7	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	44:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	44	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 44:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNNDU010000009.1 Salmonella enterica strain PNUSAS388915 SAMN37704015-rid19649473.denovo.09, whole genome shotgun sequence	5635..6072	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNNDU010000048.1 Salmonella enterica strain PNUSAS388915 SAMN37704015-rid19649473.guided.37, whole genome shotgun sequence	691..1128	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032490845.1_PDT001922061.1_genomic.fna	Salmonella_enterica	0.5217	238.812 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNDT010000007.1 Salmonella enterica strain PNUSAS389029 SAMN37704003-rid19648233.denovo.07, whole genome shotgun sequence	145249..145686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNDT010000050.1 Salmonella enterica strain PNUSAS389029 SAMN37704003-rid19648233.guided.34, whole genome shotgun sequence	1548..1985	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNDT010000004.1	159860..160729	99.885	870	0						
GCA_032490865.1_PDT001922057.1_genomic.fna	Salmonella_enterica	0.5213	707.412 KB	2	aroC_13,dnaN_11,hemD_315,hisD_15,purE_12,sucA_15,thrA_4	1675	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_315	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNDW010000001.1 Salmonella enterica strain PNUSAS389116 SAMN37704001-rid19648213.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNDW010000019.1 Salmonella enterica strain PNUSAS389116 SAMN37704001-rid19648213.guided.12, whole genome shotgun sequence	121..558	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032490885.1_PDT001922056.1_genomic.fna	Salmonella_enterica	0.518	230.277 KB	8	aroC_488,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2058	48:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_488	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:z4,z32:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABNNDV010000030.1 Salmonella enterica strain PNUSAS389058 SAMN37704018-rid19648203.denovo.30, whole genome shotgun sequence	6573..7010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABNNDV010000051.1 Salmonella enterica strain PNUSAS389058 SAMN37704018-rid19648203.guided.41, whole genome shotgun sequence	630..1067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNDV010000014.1 Salmonella enterica strain PNUSAS389058 SAMN37704018-rid19648203.denovo.14, whole genome shotgun sequence	38587..39229																																																																	
GCA_032490905.1_PDT001922058.1_genomic.fna	Salmonella_enterica	0.5212	191.426 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNDY010000002.1 Salmonella enterica strain PNUSAS388911 SAMN37704014-rid19649463.denovo.02, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNDY010000060.1 Salmonella enterica strain PNUSAS388911 SAMN37704014-rid19649463.guided.41, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNDY010000022.1 Salmonella enterica strain PNUSAS388911 SAMN37704014-rid19649463.denovo.22, whole genome shotgun sequence	60065..60707	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNDY010000035.1 Salmonella enterica strain PNUSAS388911 SAMN37704014-rid19649463.denovo.36, whole genome shotgun sequence	10979..11205																																																avrA	ABNNDY010000004.1	134378..135246	99.77	870	0						
GCA_032490925.1_PDT001922054.1_genomic.fna	Salmonella_enterica	0.5223	396.51 KB	4	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNEA010000002.1 Salmonella enterica strain PNUSAS388910 SAMN37704016-rid19648193.denovo.02, whole genome shotgun sequence	254356..254793	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNEA010000030.1 Salmonella enterica strain PNUSAS388910 SAMN37704016-rid19648193.guided.26, whole genome shotgun sequence	3785..4222	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNEA010000003.1	508896..509765	99.77	870	0						
GCA_032490945.1_PDT001922055.1_genomic.fna	Salmonella_enterica	0.5212	405.262 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNDZ010000002.1 Salmonella enterica strain PNUSAS389169 SAMN37704019-rid19649453.denovo.02, whole genome shotgun sequence	442578..443015	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.25	400/438	ABNNDZ010000047.1 Salmonella enterica strain PNUSAS389169 SAMN37704019-rid19649453.guided.39, whole genome shotgun sequence	2..401	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNDZ010000008.1	192639..193507	99.195	870	0						
GCA_032490965.1_PDT001922053.1_genomic.fna	Salmonella_enterica	0.5213	490.177 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNEC010000001.1 Salmonella enterica strain PNUSAS388917 SAMN37704009-rid19649443.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNEC010000025.1 Salmonella enterica strain PNUSAS388917 SAMN37704009-rid19649443.guided.17, whole genome shotgun sequence	13378..13815	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNEC010000013.1 Salmonella enterica strain PNUSAS388917 SAMN37704009-rid19649443.denovo.13, whole genome shotgun sequence	49245..49887	enterobacteriales	IncFII(S)	100	262 / 262	ABNNEC010000013.1 Salmonella enterica strain PNUSAS388917 SAMN37704009-rid19649443.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNNEC010000002.1	585386..586255	99.54	870	0						
GCA_032490985.1_PDT001922052.1_genomic.fna	Salmonella_enterica	0.5223	443.66 KB	4	aroC_12,dnaN_2*,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22*	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	99.8003992015968	100	dnaN_2*	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNEB010000001.1 Salmonella enterica strain PNUSAS389003 SAMN37704006-rid19648183.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNEB010000025.1 Salmonella enterica strain PNUSAS389003 SAMN37704006-rid19648183.guided.18, whole genome shotgun sequence	6695..7132	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNEB010000002.1	28833..29702	98.966	870	0						
GCA_032491005.1_PDT001922051.1_genomic.fna	Salmonella_enterica	0.5208	538.771 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_4	371	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNNED010000001.1 Salmonella enterica strain PNUSAS389128 SAMN37703999-rid19648173.denovo.01, whole genome shotgun sequence	638979..639416	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.18	425/438	ABNNED010000030.1 Salmonella enterica strain PNUSAS389128 SAMN37703999-rid19648173.guided.22, whole genome shotgun sequence	745..1169	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNED010000003.1	152189..153057	99.425	870	0						
GCA_032491025.1_PDT001922050.1_genomic.fna	Salmonella_enterica	0.5172	307.473 KB	6	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncB/O/K/Z,IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNNEG010000003.1 Salmonella enterica strain PNUSAS389017 SAMN37704004-rid19649433.denovo.03, whole genome shotgun sequence	197672..198109	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNNEG010000064.1 Salmonella enterica strain PNUSAS389017 SAMN37704004-rid19649433.guided.52, whole genome shotgun sequence	1318..1755	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncB/O/K/Z	100	160 / 160	ABNNEG010000017.1 Salmonella enterica strain PNUSAS389017 SAMN37704004-rid19649433.denovo.17, whole genome shotgun sequence	41349..41508	enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNNEG010000008.1 Salmonella enterica strain PNUSAS389017 SAMN37704004-rid19649433.denovo.08, whole genome shotgun sequence	157660..158302		enterobacteriales	IncFII(pMET)	90.92	584 / 577	ABNNEG010000031.1 Salmonella enterica strain PNUSAS389017 SAMN37704004-rid19649433.denovo.31, whole genome shotgun sequence	22105..22687																																																				
GCA_032491045.1_PDT001922049.1_genomic.fna	Salmonella_enterica	0.5227	518.801 KB	2	aroC_517,dnaN_63,hemD_48,hisD_186,purE_36,sucA_83,thrA_426	2258	28:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_517	dnaN	100	100	dnaN_63	hemD	100	100	hemD_48	hisD	100	100	hisD_186	purE	100	100	purE_36	sucA	100	100	sucA_83	thrA	100	100	thrA_426	28	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Nima		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNEE010000001.1 Salmonella enterica strain PNUSAS389154 SAMN37703984-rid19648163.denovo.01, whole genome shotgun sequence	720219..720656	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNEE010000023.1 Salmonella enterica strain PNUSAS389154 SAMN37703984-rid19648163.guided.15, whole genome shotgun sequence	1048..1485	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNEE010000003.1	155109..155978	99.54	870	0						
GCA_032491065.1_PDT001922048.1_genomic.fna	Salmonella_enterica	0.5215	200.599 KB	7	aroC_84,dnaN_76,hemD_38,hisD_16,purE_12,sucA_13,thrA_4	226	6,14:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_76	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	6,14	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Carrau		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNEF010000002.1 Salmonella enterica strain PNUSAS388982 SAMN37703986-rid19648153.denovo.02, whole genome shotgun sequence	37934..38371	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNEF010000043.1 Salmonella enterica strain PNUSAS388982 SAMN37703986-rid19648153.guided.33, whole genome shotgun sequence	4157..4594	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNEF010000001.1	159573..160442	98.966	870	0						
GCA_032491085.1_PDT001922047.1_genomic.fna	Salmonella_enterica	0.5214	521.159 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNEI010000001.1 Salmonella enterica strain PNUSAS388980 SAMN37703979-rid19648143.denovo.01, whole genome shotgun sequence	482162..482599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNEI010000026.1 Salmonella enterica strain PNUSAS388980 SAMN37703979-rid19648143.guided.23, whole genome shotgun sequence	1738..2175	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNNEI010000015.1 Salmonella enterica strain PNUSAS388980 SAMN37703979-rid19648143.denovo.15, whole genome shotgun sequence	5854..6387																																																						avrA	ABNNEI010000002.1	563554..564423	99.77	870	0						
GCA_032491105.1_PDT001922046.1_genomic.fna	Salmonella_enterica	0.5219	519.4 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNEH010000001.1 Salmonella enterica strain PNUSAS389140 SAMN37703982-rid19647203.denovo.01, whole genome shotgun sequence	639284..639721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNEH010000043.1 Salmonella enterica strain PNUSAS389140 SAMN37703982-rid19647203.guided.26, whole genome shotgun sequence	1738..2175	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNEH010000002.1	498772..499640	99.425	870	0						
GCA_032491125.1_PDT001922044.1_genomic.fna	Salmonella_enterica	0.5196	382.563 KB	5	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_105,thrA_41	3971	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(S),IncFII(SARC14)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_105	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNEK010000014.1 Salmonella enterica strain PNUSAS389062 SAMN37703989-rid19648133.denovo.14, whole genome shotgun sequence	84285..84722	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNEK010000059.1 Salmonella enterica strain PNUSAS389062 SAMN37703989-rid19648133.guided.41, whole genome shotgun sequence	2057..2494	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	95.6	250 / 262	ABNNEK010000018.1 Salmonella enterica strain PNUSAS389062 SAMN37703989-rid19648133.denovo.18, whole genome shotgun sequence	45783..46030	enterobacteriales	IncFII(SARC14)	95.74	446 / 445	ABNNEK010000018.1 Salmonella enterica strain PNUSAS389062 SAMN37703989-rid19648133.denovo.18, whole genome shotgun sequence	45079..45523																																																avrA	ABNNEK010000002.1	519548..520417	99.54	870	0						
GCA_032491145.1_PDT001922045.1_genomic.fna	Salmonella_enterica	0.5207	355.293 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNEJ010000001.1 Salmonella enterica strain PNUSAS389156 SAMN37703983-rid19649423.denovo.01, whole genome shotgun sequence	221725..222162	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99	399/438	ABNNEJ010000074.1 Salmonella enterica strain PNUSAS389156 SAMN37703983-rid19649423.guided.46, whole genome shotgun sequence	1..399	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNNEJ010000022.1 Salmonella enterica strain PNUSAS389156 SAMN37703983-rid19649423.denovo.22, whole genome shotgun sequence	12696..13338	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNNEJ010000024.1 Salmonella enterica strain PNUSAS389156 SAMN37703983-rid19649423.denovo.24, whole genome shotgun sequence	20816..21408																																																avrA	ABNNEJ010000008.1	140545..141413	99.425	870	0						
GCA_032491165.1_PDT001922043.1_genomic.fna	Salmonella_enterica	0.5212	709.289 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNEL010000001.1 Salmonella enterica strain PNUSAS389168 SAMN37703980-rid19649413.denovo.01, whole genome shotgun sequence	712049..712486	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNEL010000017.1 Salmonella enterica strain PNUSAS389168 SAMN37703980-rid19649413.guided.12, whole genome shotgun sequence	9257..9694	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNEL010000002.1	160310..161179	99.54	870	0						
GCA_032491185.1_PDT001922042.1_genomic.fna	Salmonella_enterica	0.5212	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNEN010000001.1 Salmonella enterica strain PNUSAS388897 SAMN37703974-rid19648123.denovo.01, whole genome shotgun sequence	427973..428410	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNEN010000018.1 Salmonella enterica strain PNUSAS388897 SAMN37703974-rid19648123.guided.12, whole genome shotgun sequence	9257..9694	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNEN010000004.1	160409..161278	99.54	870	0						
GCA_032491205.1_PDT001922040.1_genomic.fna	Salmonella_enterica	0.5209	215.629 KB	9	aroC_42,dnaN_11,hemD_48,hisD_149,purE_12,sucA_13,thrA_4	1575	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(pMET),IncI1-I(Alpha)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNEO010000011.1 Salmonella enterica strain PNUSAS389071 SAMN37703971-rid19649403.denovo.11, whole genome shotgun sequence	148204..148641	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNEO010000089.1 Salmonella enterica strain PNUSAS389071 SAMN37703971-rid19649403.guided.55, whole genome shotgun sequence	2057..2494	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNEO010000033.1 Salmonella enterica strain PNUSAS389071 SAMN37703971-rid19649403.denovo.33, whole genome shotgun sequence	11446..12088	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNNEO010000031.1 Salmonella enterica strain PNUSAS389071 SAMN37703971-rid19649403.denovo.31, whole genome shotgun sequence	18865..19447		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNNEO010000021.1 Salmonella enterica strain PNUSAS389071 SAMN37703971-rid19649403.denovo.21, whole genome shotgun sequence	68674..68815																																																				
GCA_032491225.1_PDT001922039.1_genomic.fna	Salmonella_enterica	0.5211	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNEP010000002.1 Salmonella enterica strain PNUSAS389065 SAMN37703993-rid19648103.denovo.02, whole genome shotgun sequence	717883..718320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNEP010000021.1 Salmonella enterica strain PNUSAS389065 SAMN37703993-rid19648103.guided.15, whole genome shotgun sequence	2064..2501	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNEP010000004.1	548111..548980	99.54	870	0						
GCA_032491255.1_PDT001922038.1_genomic.fna	Salmonella_enterica	0.5214	406.751 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNEQ010000004.1 Salmonella enterica strain PNUSAS389035 SAMN37703990-rid19648093.denovo.04, whole genome shotgun sequence	5042..5479	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNEQ010000026.1 Salmonella enterica strain PNUSAS389035 SAMN37703990-rid19648093.guided.18, whole genome shotgun sequence	704..1141	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	98.96	193 / 193	ABNNEQ010000020.1 Salmonella enterica strain PNUSAS389035 SAMN37703990-rid19648093.denovo.23, whole genome shotgun sequence	805..997	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNEQ010000014.1 Salmonella enterica strain PNUSAS389035 SAMN37703990-rid19648093.denovo.14, whole genome shotgun sequence	48711..49353		enterobacteriales	IncFII(S)	100	262 / 262	ABNNEQ010000014.1 Salmonella enterica strain PNUSAS389035 SAMN37703990-rid19648093.denovo.14, whole genome shotgun sequence	4458..4719																																									avrA	ABNNEQ010000002.1	553169..554038	99.54	870	0						
GCA_032491275.1_PDT001922041.1_genomic.fna	Salmonella_enterica	0.5225	407.642 KB	4	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNNEM010000001.1 Salmonella enterica strain PNUSAS389064 SAMN37703995-rid19648113.denovo.01, whole genome shotgun sequence	307913..308350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNNEM010000028.1 Salmonella enterica strain PNUSAS389064 SAMN37703995-rid19648113.guided.18, whole genome shotgun sequence	5077..5514	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032491295.1_PDT001922037.1_genomic.fna	Salmonella_enterica	0.5223	443.638 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNER010000001.1 Salmonella enterica strain PNUSAS389166 SAMN37703981-rid19648083.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	377/438	ABNNER010000024.1 Salmonella enterica strain PNUSAS389166 SAMN37703981-rid19648083.guided.19, whole genome shotgun sequence	1..377	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNER010000002.1	511329..512198	98.966	870	0						
GCA_032491315.1_PDT001922036.1_genomic.fna	Salmonella_enterica	0.5211	364.724 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNES010000002.1 Salmonella enterica strain PNUSAS388959 SAMN37703988-rid19648073.denovo.02, whole genome shotgun sequence	239428..239865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNES010000037.1 Salmonella enterica strain PNUSAS388959 SAMN37703988-rid19648073.guided.24, whole genome shotgun sequence	10292..10729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNES010000012.1 Salmonella enterica strain PNUSAS388959 SAMN37703988-rid19648073.denovo.12, whole genome shotgun sequence	37285..37927	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNES010000012.1 Salmonella enterica strain PNUSAS388959 SAMN37703988-rid19648073.denovo.12, whole genome shotgun sequence	10978..11204																																																											
GCA_032491335.1_PDT001922035.1_genomic.fna	Salmonella_enterica	0.5212	720.971 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNEU010000001.1 Salmonella enterica strain PNUSAS389164 SAMN37703973-rid19649393.denovo.01, whole genome shotgun sequence	717104..717541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNEU010000020.1 Salmonella enterica strain PNUSAS389164 SAMN37703973-rid19649393.guided.17, whole genome shotgun sequence	26..463	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNEU010000003.1	548111..548980	99.54	870	0						
GCA_032491355.1_PDT001922034.1_genomic.fna	Salmonella_enterica	0.5213	721.039 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNET010000001.1 Salmonella enterica strain PNUSAS389167 SAMN37703977-rid19648063.denovo.01, whole genome shotgun sequence	717883..718320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNET010000019.1 Salmonella enterica strain PNUSAS389167 SAMN37703977-rid19648063.guided.16, whole genome shotgun sequence	630..1067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNET010000003.1	160550..161419	99.54	870	0						
GCA_032491375.1_PDT001922032.1_genomic.fna	Salmonella_enterica	0.5209	700.126 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNEW010000001.1 Salmonella enterica strain PNUSAS389151 SAMN37703987-rid19648053.denovo.01, whole genome shotgun sequence	510627..511064	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNEW010000020.1 Salmonella enterica strain PNUSAS389151 SAMN37703987-rid19648053.guided.17, whole genome shotgun sequence	387..824	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNNEW010000011.1 Salmonella enterica strain PNUSAS389151 SAMN37703987-rid19648053.denovo.11, whole genome shotgun sequence	34958..35491																																																						avrA	ABNNEW010000002.1	544631..545499	99.425	870	0						
GCA_032491395.1_PDT001922033.1_genomic.fna	Salmonella_enterica	0.5179	230.575 KB	7	aroC_488,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2058	48:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_488	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:z4,z32:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABNNEV010000030.1 Salmonella enterica strain PNUSAS389053 SAMN37703978-rid19649383.denovo.30, whole genome shotgun sequence	6573..7010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABNNEV010000053.1 Salmonella enterica strain PNUSAS389053 SAMN37703978-rid19649383.guided.45, whole genome shotgun sequence	70..507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNEV010000012.1 Salmonella enterica strain PNUSAS389053 SAMN37703978-rid19649383.denovo.12, whole genome shotgun sequence	38587..39229																																																																	
GCA_032491415.1_PDT001922031.1_genomic.fna	Salmonella_enterica	0.5205	335.014 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNEX010000001.1 Salmonella enterica strain PNUSAS388983 SAMN37703991-rid19648043.denovo.01, whole genome shotgun sequence	621661..622098	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.36	426/438	ABNNEX010000062.1 Salmonella enterica strain PNUSAS388983 SAMN37703991-rid19648043.guided.51, whole genome shotgun sequence	1..426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNNEX010000022.1 Salmonella enterica strain PNUSAS388983 SAMN37703991-rid19648043.denovo.22, whole genome shotgun sequence	12701..13343	enterobacteriales	IncI1-I(Alpha)	98.6	143 / 142	ABNNEX010000024.1 Salmonella enterica strain PNUSAS388983 SAMN37703991-rid19648043.denovo.24, whole genome shotgun sequence	15197..15339																																																avrA	ABNNEX010000009.1	140553..141421	99.425	870	0						
GCA_032491435.1_PDT001922030.1_genomic.fna	Salmonella_enterica	0.5206	452.092 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNEY010000001.1 Salmonella enterica strain PNUSAS389056 SAMN37703975-rid19649373.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNEY010000025.1 Salmonella enterica strain PNUSAS389056 SAMN37703975-rid19649373.guided.17, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNEY010000013.1 Salmonella enterica strain PNUSAS389056 SAMN37703975-rid19649373.denovo.13, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNNEY010000013.1 Salmonella enterica strain PNUSAS389056 SAMN37703975-rid19649373.denovo.13, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNNEY010000014.1 Salmonella enterica strain PNUSAS389056 SAMN37703975-rid19649373.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNNEY010000002.1	553690..554559	99.54	870	0						
GCA_032491455.1_PDT001922029.1_genomic.fna	Salmonella_enterica	0.5217	561.601 KB	4	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNNFA010000008.1 Salmonella enterica strain PNUSAS389117 SAMN37703992-rid19648033.denovo.08, whole genome shotgun sequence	149605..150042	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNNFA010000033.1 Salmonella enterica strain PNUSAS389117 SAMN37703992-rid19648033.guided.26, whole genome shotgun sequence	2000..2437	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNNFA010000017.1 Salmonella enterica strain PNUSAS389117 SAMN37703992-rid19648033.denovo.17, whole genome shotgun sequence	34958..35491																																																						avrA	ABNNFA010000002.1	604835..605704	99.54	870	0						
GCA_032491475.1_PDT001922028.1_genomic.fna	Salmonella_enterica	0.5219	291.515 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNEZ010000003.1 Salmonella enterica strain PNUSAS389061 SAMN37703994-rid19649363.denovo.03, whole genome shotgun sequence	260268..260705	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNEZ010000042.1 Salmonella enterica strain PNUSAS389061 SAMN37703994-rid19649363.guided.33, whole genome shotgun sequence	1785..2222	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNEZ010000024.1 Salmonella enterica strain PNUSAS389061 SAMN37703994-rid19649363.denovo.24, whole genome shotgun sequence	6015..6657	enterobacteriales	IncFII(Yp)	99.57	230 / 230	ABNNEZ010000019.1 Salmonella enterica strain PNUSAS389061 SAMN37703994-rid19649363.denovo.19, whole genome shotgun sequence	5811..6040		enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNEZ010000029.1 Salmonella enterica strain PNUSAS389061 SAMN37703994-rid19649363.denovo.29, whole genome shotgun sequence	10978..11204																																																				
GCA_032491495.1_PDT001922026.1_genomic.fna	Salmonella_enterica	0.5228	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNFC010000001.1 Salmonella enterica strain PNUSAS389054 SAMN37703972-rid19648013.denovo.01, whole genome shotgun sequence	570314..570751	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNFC010000023.1 Salmonella enterica strain PNUSAS389054 SAMN37703972-rid19648013.guided.16, whole genome shotgun sequence	2057..2494	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNFC010000002.1	183141..184010	98.966	870	0						
GCA_032491515.1_PDT001922027.1_genomic.fna	Salmonella_enterica	0.522	609.386 KB	3	aroC_52,dnaN_3,hemD_40,hisD_51,purE_44,sucA_45,thrA_3	101	4:r:l,w	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_52	dnaN	100	100	dnaN_3	hemD	100	100	hemD_40	hisD	100	100	hisD_51	purE	100	100	purE_44	sucA	100	100	sucA_45	thrA	100	100	thrA_3	4	r	l,w	Salmonella enterica subspecies enterica (subspecies I)	Bochum		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNFB010000002.1 Salmonella enterica strain PNUSAS388981 SAMN37703985-rid19648023.denovo.02, whole genome shotgun sequence	37912..38349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNFB010000033.1 Salmonella enterica strain PNUSAS388981 SAMN37703985-rid19648023.guided.26, whole genome shotgun sequence	704..1141	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNNFB010000003.1 Salmonella enterica strain PNUSAS388981 SAMN37703985-rid19648023.denovo.03, whole genome shotgun sequence	357273..357695	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNNFB010000031.1 Salmonella enterica strain PNUSAS388981 SAMN37703985-rid19648023.guided.22, whole genome shotgun sequence	5455..5877	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNFB010000008.1	28832..29701	98.966	870	0						
GCA_032491535.1_PDT001922025.1_genomic.fna	Salmonella_enterica	0.5216	223.874 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-IIa,aadA2b,aph(6)-Id,aph(3'')-Ib,aph(3')-IIa,aac(6')-Iaa,aadA2b,blaTEM-1B,blaTEM-1B,floR,floR,qnrB19,qnrB19,sul2,sul1,sul2,sul1,tet(A),tet(A),tet(A)	0		3	Col(pHAD28),IncC,IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNFD010000001.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.denovo.01, whole genome shotgun sequence	145483..145920	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNFD010000030.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.denovo.30, whole genome shotgun sequence	21486..22322	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNFD010000030.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.denovo.30, whole genome shotgun sequence	20683..21486	Streptomycin	AF321551	aph(3')-IIa	100	795/795	ABNNFD010000035.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.denovo.35, whole genome shotgun sequence	11910..12704	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	aadA2b	99.87	780/780	ABNNFD010000036.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.denovo.36, whole genome shotgun sequence	7459..8238	Spectinomycin, Streptomycin	D43625	aph(6)-Id	100	837/837	ABNNFD010000058.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.guided.40, whole genome shotgun sequence	9409..10245	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNFD010000058.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.guided.40, whole genome shotgun sequence	8606..9409	Streptomycin	AF321551	aph(3')-IIa	100	795/795	ABNNFD010000062.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.guided.49, whole genome shotgun sequence	1655..2449	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	aac(6')-Iaa	100	438/438	ABNNFD010000064.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.guided.52, whole genome shotgun sequence	2070..2507	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNNFD010000070.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.guided.66, whole genome shotgun sequence	39..818	Spectinomycin, Streptomycin	D43625	blaTEM-1B	100	861/861	ABNNFD010000035.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.denovo.35, whole genome shotgun sequence	2884..3744	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNNFD010000060.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.guided.45, whole genome shotgun sequence	670..1530	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNNFD010000030.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.denovo.30, whole genome shotgun sequence	25458..26671	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNNFD010000066.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.guided.55, whole genome shotgun sequence	367..1580	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNNFD010000046.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.denovo.53, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNNFD010000068.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.guided.58, whole genome shotgun sequence	372..1016	Ciprofloxacin	EU432277	sul2	100	816/816	ABNNFD010000030.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.denovo.30, whole genome shotgun sequence	19807..20622	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNNFD010000036.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.denovo.36, whole genome shotgun sequence	6115..6954	Sulfamethoxazole	U12338	sul2	100	816/816	ABNNFD010000058.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.guided.40, whole genome shotgun sequence	7730..8545	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNNFD010000063.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.guided.50, whole genome shotgun sequence	465..1304	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNNFD010000030.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.denovo.30, whole genome shotgun sequence	23583..24857	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNNFD010000065.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.guided.54, whole genome shotgun sequence	1212..2486	Doxycycline, Tetracycline	AF534183	tet(A)	99.83	1172/1200	ABNNFD010000069.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.guided.63, whole genome shotgun sequence	1..1172	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																											enterobacteriales	Col(pHAD28)	100	131 / 131	ABNNFD010000046.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.denovo.53, whole genome shotgun sequence	1150..1280	enterobacteriales	IncC	100	417 / 417	ABNNFD010000040.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.denovo.42, whole genome shotgun sequence	2910..3326		enterobacteriales	IncFII(S)	100	262 / 262	ABNNFD010000017.1 Salmonella enterica strain PNUSAS389162 SAMN37703976-rid19649353.denovo.17, whole genome shotgun sequence	1965..2226																																									avrA	ABNNFD010000010.1	174241..175110	99.885	870	0						
GCA_032491555.1_PDT001922024.1_genomic.fna	Salmonella_enterica	0.5211	655.798 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNFE010000001.1 Salmonella enterica strain PNUSAS388943 SAMN37703969-rid19648003.denovo.01, whole genome shotgun sequence	384606..385043	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNFE010000043.1 Salmonella enterica strain PNUSAS388943 SAMN37703969-rid19648003.guided.19, whole genome shotgun sequence	11840..12277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNFE010000003.1	504146..505016	99.196	871	0						
GCA_032491575.1_PDT001922023.1_genomic.fna	Salmonella_enterica	0.5222	725.236 KB	3	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNFF010000001.1 Salmonella enterica strain PNUSAS388942 SAMN37703963-rid19649343.denovo.01, whole genome shotgun sequence	720626..721063	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNFF010000021.1 Salmonella enterica strain PNUSAS388942 SAMN37703963-rid19649343.guided.15, whole genome shotgun sequence	20869..21306	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNFF010000003.1	541259..542125	99.08	870	0						
GCA_032491595.1_PDT001922022.1_genomic.fna	Salmonella_enterica	0.5206	700.533 KB	3	aroC_41,dnaN_42,hemD_43,hisD_501,purE_9,sucA_12,thrA_2	1567	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_501	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNFH010000007.1 Salmonella enterica strain PNUSAS388902 SAMN37703966-rid19647993.denovo.07, whole genome shotgun sequence	75306..75743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNFH010000021.1 Salmonella enterica strain PNUSAS388902 SAMN37703966-rid19647993.guided.16, whole genome shotgun sequence	6865..7302	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNFH010000008.1 Salmonella enterica strain PNUSAS388902 SAMN37703966-rid19647993.denovo.08, whole genome shotgun sequence	38587..39229																																																						avrA	ABNNFH010000003.1	559678..560547	99.425	870	0						
GCA_032491615.1_PDT001922021.1_genomic.fna	Salmonella_enterica	0.5219	477.324 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(Yp)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNFG010000001.1 Salmonella enterica strain PNUSAS389005 SAMN37703957-rid19647983.denovo.01, whole genome shotgun sequence	600586..601023	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNFG010000038.1 Salmonella enterica strain PNUSAS389005 SAMN37703957-rid19647983.guided.23, whole genome shotgun sequence	2064..2501	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	92.64	231 / 230	ABNNFG010000015.1 Salmonella enterica strain PNUSAS389005 SAMN37703957-rid19647983.denovo.15, whole genome shotgun sequence	38175..38403																																																						avrA	ABNNFG010000010.1	140203..141071	99.195	870	0						
GCA_032491635.1_PDT001922020.1_genomic.fna	Salmonella_enterica	0.5221	304.608 KB	6	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(SARC14),IncFII(Yp),IncFII(Yp)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNFI010000003.1 Salmonella enterica strain PNUSAS388949 SAMN37703959-rid19649333.denovo.03, whole genome shotgun sequence	113268..113705	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNFI010000036.1 Salmonella enterica strain PNUSAS388949 SAMN37703959-rid19649333.guided.26, whole genome shotgun sequence	14404..14841	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNFI010000016.1 Salmonella enterica strain PNUSAS388949 SAMN37703959-rid19649333.denovo.16, whole genome shotgun sequence	22943..23585	enterobacteriales	IncFII(SARC14)	95.52	446 / 445	ABNNFI010000022.1 Salmonella enterica strain PNUSAS388949 SAMN37703959-rid19649333.denovo.22, whole genome shotgun sequence	970..1414		enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNFI010000021.1 Salmonella enterica strain PNUSAS388949 SAMN37703959-rid19649333.denovo.21, whole genome shotgun sequence	61522..61748		enterobacteriales	IncFII(Yp)	94.01	217 / 230	ABNNFI010000022.1 Salmonella enterica strain PNUSAS388949 SAMN37703959-rid19649333.denovo.22, whole genome shotgun sequence	495..709																																		avrA	ABNNFI010000002.1	411221..412090	99.77	870	0						
GCA_032491655.1_PDT001922019.1_genomic.fna	Salmonella_enterica	0.5215	314.792 KB	6	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNFJ010000005.1 Salmonella enterica strain PNUSAS389075 SAMN37703960-rid19647973.denovo.05, whole genome shotgun sequence	239429..239866	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNFJ010000034.1 Salmonella enterica strain PNUSAS389075 SAMN37703960-rid19647973.guided.26, whole genome shotgun sequence	6189..6626	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNFJ010000015.1 Salmonella enterica strain PNUSAS389075 SAMN37703960-rid19647973.denovo.15, whole genome shotgun sequence	37285..37927	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNFJ010000015.1 Salmonella enterica strain PNUSAS389075 SAMN37703960-rid19647973.denovo.15, whole genome shotgun sequence	10978..11204																																																											
GCA_032491675.1_PDT001922018.1_genomic.fna	Salmonella_enterica	0.5219	317.844 KB	5	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNFK010000001.1 Salmonella enterica strain PNUSAS389006 SAMN37703954-rid19649323.denovo.01, whole genome shotgun sequence	336109..336546	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNFK010000033.1 Salmonella enterica strain PNUSAS389006 SAMN37703954-rid19649323.guided.25, whole genome shotgun sequence	2031..2468	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNFK010000002.1	410733..411602	99.77	870	0						
GCA_032491695.1_PDT001922017.1_genomic.fna	Salmonella_enterica	0.5211	393.617 KB	5	aroC_11,dnaN_10,hemD_251*,hisD_13,purE_10,sucA_35,thrA_4	Unknown	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	99.7685185185185	100	hemD_251*	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNFL010000002.1 Salmonella enterica strain PNUSAS388990 SAMN37703948-rid19647963.denovo.02, whole genome shotgun sequence	260301..260738	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNFL010000044.1 Salmonella enterica strain PNUSAS388990 SAMN37703948-rid19647963.guided.30, whole genome shotgun sequence	9216..9653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNFL010000023.1 Salmonella enterica strain PNUSAS388990 SAMN37703948-rid19647963.denovo.23, whole genome shotgun sequence	6015..6657	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNFL010000027.1 Salmonella enterica strain PNUSAS388990 SAMN37703948-rid19647963.denovo.27, whole genome shotgun sequence	10978..11204																																																											
GCA_032491715.1_PDT001922016.1_genomic.fna	Salmonella_enterica	0.5219	522.397 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNFM010000001.1 Salmonella enterica strain PNUSAS389002 SAMN37703964-rid19647953.denovo.01, whole genome shotgun sequence	116844..117281	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNFM010000038.1 Salmonella enterica strain PNUSAS389002 SAMN37703964-rid19647953.guided.16, whole genome shotgun sequence	13430..13867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNFM010000003.1	498772..499640	99.425	870	0						
GCA_032491735.1_PDT001922015.1_genomic.fna	Salmonella_enterica	0.5203	388.985 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNFN010000001.1 Salmonella enterica strain PNUSAS389159 SAMN37703938-rid19649313.denovo.01, whole genome shotgun sequence	485097..485534	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNFN010000036.1 Salmonella enterica strain PNUSAS389159 SAMN37703938-rid19649313.guided.28, whole genome shotgun sequence	2256..2693	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNNFN010000003.1 Salmonella enterica strain PNUSAS389159 SAMN37703938-rid19649313.denovo.03, whole genome shotgun sequence	388839..389261	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNNFN010000035.1 Salmonella enterica strain PNUSAS389159 SAMN37703938-rid19649313.guided.26, whole genome shotgun sequence	3594..4016	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNFN010000002.1	122281..123150	99.195	870	0						
GCA_032491755.1_PDT001922014.1_genomic.fna	Salmonella_enterica	0.5223	443.924 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNFP010000001.1 Salmonella enterica strain PNUSAS389036 SAMN37703968-rid19647943.denovo.01, whole genome shotgun sequence	322331..322768	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNFP010000032.1 Salmonella enterica strain PNUSAS389036 SAMN37703968-rid19647943.guided.22, whole genome shotgun sequence	3918..4355	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNNFP010000024.1 Salmonella enterica strain PNUSAS389036 SAMN37703968-rid19647943.denovo.26, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNNFP010000034.1 Salmonella enterica strain PNUSAS389036 SAMN37703968-rid19647943.guided.27, whole genome shotgun sequence	1258..1902	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNNFP010000024.1 Salmonella enterica strain PNUSAS389036 SAMN37703968-rid19647943.denovo.26, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNNFP010000034.1 Salmonella enterica strain PNUSAS389036 SAMN37703968-rid19647943.guided.27, whole genome shotgun sequence	602..732																																																avrA	ABNNFP010000002.1	183135..184004	98.966	870	0						
GCA_032491775.1_PDT001922013.1_genomic.fna	Salmonella_enterica	0.5225	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNFO010000001.1 Salmonella enterica strain PNUSAS388952 SAMN37703951-rid19649303.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNFO010000020.1 Salmonella enterica strain PNUSAS388952 SAMN37703951-rid19649303.guided.14, whole genome shotgun sequence	10705..11142	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNFO010000002.1	183135..184004	98.966	870	0						
GCA_032491795.1_PDT001922012.1_genomic.fna	Salmonella_enterica	0.5217	506.114 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNNFQ010000001.1 Salmonella enterica strain PNUSAS388941 SAMN37703962-rid19647933.denovo.01, whole genome shotgun sequence	821446..821883	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNNFQ010000025.1 Salmonella enterica strain PNUSAS388941 SAMN37703962-rid19647933.guided.19, whole genome shotgun sequence	728..1165	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNFQ010000003.1	138356..139225	98.966	870	0						
GCA_032491815.1_PDT001922010.1_genomic.fna	Salmonella_enterica	0.5139	160.309 KB	10	aroC_380,dnaN_482,hemD_276,hisD_511,purE_240,sucA_360,thrA_208	2868	40:z4,z32:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_380	dnaN	100	100	dnaN_482	hemD	100	100	hemD_276	hisD	100	100	hisD_511	purE	100	100	purE_240	sucA	100	100	sucA_360	thrA	100	100	thrA_208	40	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV [1],40:z4,z32:-	SalmID reports this as ssp VII, which has not been formally recognized.	O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032491835.1_PDT001922011.1_genomic.fna	Salmonella_enterica	0.5231	444.116 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNFR010000001.1 Salmonella enterica strain PNUSAS389074 SAMN37703955-rid19649293.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNFR010000031.1 Salmonella enterica strain PNUSAS389074 SAMN37703955-rid19649293.guided.24, whole genome shotgun sequence	1524..1961	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNFR010000002.1	149828..150697	99.655	870	0						
GCA_032491855.1_PDT001922009.1_genomic.fna	Salmonella_enterica	0.5216	637.99 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNFT010000002.1 Salmonella enterica strain PNUSAS388944 SAMN37703970-rid19647923.denovo.02, whole genome shotgun sequence	116844..117281	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNFT010000019.1 Salmonella enterica strain PNUSAS388944 SAMN37703970-rid19647923.guided.15, whole genome shotgun sequence	9265..9702	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNFT010000003.1	509484..510352	99.425	870	0						
GCA_032491875.1_PDT001922008.1_genomic.fna	Salmonella_enterica	0.5202	432.342 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNFU010000001.1 Salmonella enterica strain PNUSAS388946 SAMN37703961-rid19649273.denovo.01, whole genome shotgun sequence	388853..389290	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNFU010000025.1 Salmonella enterica strain PNUSAS388946 SAMN37703961-rid19649273.guided.16, whole genome shotgun sequence	9257..9694	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNNFU010000011.1 Salmonella enterica strain PNUSAS388946 SAMN37703961-rid19649273.denovo.11, whole genome shotgun sequence	34957..35490																																																						avrA	ABNNFU010000002.1	544474..545342	99.425	870	0						
GCA_032491895.1_PDT001922007.1_genomic.fna	Salmonella_enterica	0.5215	263.211 KB	5	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNFW010000002.1 Salmonella enterica strain PNUSAS388945 SAMN37703958-rid19647913.denovo.02, whole genome shotgun sequence	582663..583100	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNFW010000041.1 Salmonella enterica strain PNUSAS388945 SAMN37703958-rid19647913.guided.27, whole genome shotgun sequence	9265..9702	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNFW010000001.1	555176..556045	99.31	870	0						
GCA_032491915.1_PDT001922006.1_genomic.fna	Salmonella_enterica	0.522	618.567 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNFV010000001.1 Salmonella enterica strain PNUSAS389077 SAMN37703953-rid19649263.denovo.01, whole genome shotgun sequence	596146..596583	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNFV010000038.1 Salmonella enterica strain PNUSAS389077 SAMN37703953-rid19649263.guided.24, whole genome shotgun sequence	1860..2297	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNFV010000003.1	523334..524202	99.425	870	0						
GCA_032491935.1_PDT001922005.1_genomic.fna	Salmonella_enterica	0.5204	714.972 KB	3	aroC_13,dnaN_11,hemD_509,hisD_15,purE_12,sucA_15,thrA_4	3111	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCRY)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_509	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNFX010000001.1 Salmonella enterica strain PNUSAS388948 SAMN37703956-rid19649253.denovo.01, whole genome shotgun sequence	309506..309943	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNFX010000030.1 Salmonella enterica strain PNUSAS388948 SAMN37703956-rid19649253.guided.22, whole genome shotgun sequence	7..444	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	93.93	593 / 593	ABNNFX010000016.1 Salmonella enterica strain PNUSAS388948 SAMN37703956-rid19649253.denovo.16, whole genome shotgun sequence	10692..11284																																																																	
GCA_032491955.1_PDT001922004.1_genomic.fna	Salmonella_enterica	0.5217	390.872 KB	4	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNFZ010000001.1 Salmonella enterica strain PNUSAS389067 SAMN37703947-rid19647903.denovo.01, whole genome shotgun sequence	346964..347401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNFZ010000034.1 Salmonella enterica strain PNUSAS389067 SAMN37703947-rid19647903.guided.23, whole genome shotgun sequence	704..1141	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNFZ010000006.1	150551..151420	99.54	870	0						
GCA_032491975.1_PDT001922003.1_genomic.fna	Salmonella_enterica	0.5213	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNFY010000001.1 Salmonella enterica strain PNUSAS389066 SAMN37703949-rid19649243.denovo.01, whole genome shotgun sequence	427973..428410	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNFY010000019.1 Salmonella enterica strain PNUSAS389066 SAMN37703949-rid19649243.guided.16, whole genome shotgun sequence	1703..2140	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNFY010000004.1	160431..161300	99.54	870	0						
GCA_032491995.1_PDT001922002.1_genomic.fna	Salmonella_enterica	0.522	594.18 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNGA010000001.1 Salmonella enterica strain PNUSAS389001 SAMN37703965-rid19647893.denovo.01, whole genome shotgun sequence	441427..441864	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNGA010000034.1 Salmonella enterica strain PNUSAS389001 SAMN37703965-rid19647893.guided.31, whole genome shotgun sequence	704..1141	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032492015.1_PDT001922001.1_genomic.fna	Salmonella_enterica	0.5209	225.116 KB	7	aroC_111,dnaN_109,hemD_8,hisD_120,purE_318,sucA_45,thrA_4	931	6,14:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_109	hemD	100	100	hemD_8	hisD	100	100	hisD_120	purE	100	100	purE_318	sucA	100	100	sucA_45	thrA	100	100	thrA_4	6,14	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Florida		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNGB010000002.1 Salmonella enterica strain PNUSAS389063 SAMN37703950-rid19649233.denovo.02, whole genome shotgun sequence	37949..38386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNGB010000049.1 Salmonella enterica strain PNUSAS389063 SAMN37703950-rid19649233.guided.34, whole genome shotgun sequence	8216..8653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032492035.1_PDT001921997.1_genomic.fna	Salmonella_enterica	0.5205	302.142 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	6	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,qnrS1,qnrS1,sul3,sul3,tet(A),tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNGE010000001.1 Salmonella enterica strain PNUSAS389015 SAMN37703936-rid19647873.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNGE010000046.1 Salmonella enterica strain PNUSAS389015 SAMN37703936-rid19647873.guided.36, whole genome shotgun sequence	671..1108	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNNGE010000004.1 Salmonella enterica strain PNUSAS389015 SAMN37703936-rid19647873.denovo.04, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNNGE010000041.1 Salmonella enterica strain PNUSAS389015 SAMN37703936-rid19647873.guided.29, whole genome shotgun sequence	8092..8514	Fosfomycin	LAPJ01000014	qnrS1	100	657/657	ABNNGE010000025.1 Salmonella enterica strain PNUSAS389015 SAMN37703936-rid19647873.denovo.25, whole genome shotgun sequence	1014..1670	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNGE010000045.1 Salmonella enterica strain PNUSAS389015 SAMN37703936-rid19647873.guided.34, whole genome shotgun sequence	1055..1711	Ciprofloxacin	AB187515	sul3	100	792/792	ABNNGE010000029.1 Salmonella enterica strain PNUSAS389015 SAMN37703936-rid19647873.denovo.35, whole genome shotgun sequence	888..1679	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNNGE010000047.1 Salmonella enterica strain PNUSAS389015 SAMN37703936-rid19647873.guided.37, whole genome shotgun sequence	1826..2617	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABNNGE010000025.1 Salmonella enterica strain PNUSAS389015 SAMN37703936-rid19647873.denovo.25, whole genome shotgun sequence	6325..7524	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNNGE010000042.1 Salmonella enterica strain PNUSAS389015 SAMN37703936-rid19647873.guided.30, whole genome shotgun sequence	40..1239	Doxycycline, Tetracycline	AJ517790	tet(A)	99.83	1200/1200	ABNNGE010000043.1 Salmonella enterica strain PNUSAS389015 SAMN37703936-rid19647873.guided.31, whole genome shotgun sequence	40..1239	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNGE010000031.1 Salmonella enterica strain PNUSAS389015 SAMN37703936-rid19647873.denovo.39, whole genome shotgun sequence	183..656	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNGE010000048.1 Salmonella enterica strain PNUSAS389015 SAMN37703936-rid19647873.guided.40, whole genome shotgun sequence	1202..1675	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																																													parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.66	374 / 374	ABNNGE010000025.1 Salmonella enterica strain PNUSAS389015 SAMN37703936-rid19647873.denovo.25, whole genome shotgun sequence	14449..14822																																																						avrA	ABNNGE010000002.1	170671..171540	99.195	870	0						
GCA_032492055.1_PDT001921999.1_genomic.fna	Salmonella_enterica	0.5159	370.957 KB	6	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNNGD010000001.1 Salmonella enterica strain PNUSAS389100 SAMN37703946-rid19647883.denovo.01, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNGD010000011.1 Salmonella enterica strain PNUSAS389100 SAMN37703946-rid19647883.denovo.11, whole genome shotgun sequence	38587..39229																																																																	
GCA_032492075.1_PDT001921998.1_genomic.fna	Salmonella_enterica	0.517	307.595 KB	6	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNNGF010000002.1 Salmonella enterica strain PNUSAS388996 SAMN37703945-rid19649213.denovo.02, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNNGF010000050.1 Salmonella enterica strain PNUSAS388996 SAMN37703945-rid19649213.guided.35, whole genome shotgun sequence	1385..1822	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNNGF010000022.1 Salmonella enterica strain PNUSAS388996 SAMN37703945-rid19649213.denovo.22, whole genome shotgun sequence	11196..11838																																																																	
GCA_032492095.1_PDT001922000.1_genomic.fna	Salmonella_enterica	0.5228	517.086 KB	3	aroC_543,dnaN_69,hemD_101,hisD_12,purE_370,sucA_130,thrA_347	2553	-:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_543	dnaN	100	100	dnaN_69	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_370	sucA	100	100	sucA_130	thrA	100	100	thrA_347	-	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:y:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNNGC010000001.1 Salmonella enterica strain PNUSAS389073 SAMN37703952-rid19649223.denovo.01, whole genome shotgun sequence	626723..627160	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNNGC010000018.1 Salmonella enterica strain PNUSAS389073 SAMN37703952-rid19649223.guided.15, whole genome shotgun sequence	2057..2494	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNGC010000002.1	514140..515009	99.31	870	0						
GCA_032492115.1_PDT001921996.1_genomic.fna	Salmonella_enterica	0.5207	225.116 KB	8	aroC_111,dnaN_109,hemD_8,hisD_120,purE_318*,sucA_45,thrA_4	931*	6,14:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_109	hemD	100	100	hemD_8	hisD	100	100	hisD_120	purE	99.749373433584	100	purE_318*	sucA	100	100	sucA_45	thrA	100	100	thrA_4	6,14	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Florida		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNGG010000002.1 Salmonella enterica strain PNUSAS388954 SAMN37703944-rid19649203.denovo.02, whole genome shotgun sequence	37913..38350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNGG010000060.1 Salmonella enterica strain PNUSAS388954 SAMN37703944-rid19649203.guided.45, whole genome shotgun sequence	296..733	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032492135.1_PDT001921995.1_genomic.fna	Salmonella_enterica	0.5219	455.237 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNGH010000001.1 Salmonella enterica strain PNUSAS388961 SAMN37703931-rid19649893.denovo.01, whole genome shotgun sequence	545254..545691	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNGH010000040.1 Salmonella enterica strain PNUSAS388961 SAMN37703931-rid19649893.guided.22, whole genome shotgun sequence	8375..8812	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNGH010000002.1	394792..395660	99.425	870	0						
GCA_032492155.1_PDT001921994.1_genomic.fna	Salmonella_enterica	0.5218	317.843 KB	5	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNGI010000003.1 Salmonella enterica strain PNUSAS389106 SAMN37703932-rid19647863.denovo.03, whole genome shotgun sequence	139980..140417	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNGI010000032.1 Salmonella enterica strain PNUSAS389106 SAMN37703932-rid19647863.guided.29, whole genome shotgun sequence	1497..1934	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNGI010000010.1 Salmonella enterica strain PNUSAS389106 SAMN37703932-rid19647863.denovo.10, whole genome shotgun sequence	38587..39229																																																						avrA	ABNNGI010000002.1	509140..510009	99.77	870	0						
GCA_032492175.1_PDT001921993.1_genomic.fna	Salmonella_enterica	0.514	365.452 KB	5	aroC_65,dnaN_25,hemD_29,hisD_24,purE_20,sucA_50,thrA_497	2131	41:z4,z23:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_65	dnaN	100	100	dnaN_25	hemD	100	100	hemD_29	hisD	100	100	hisD_24	purE	100	100	purE_20	sucA	100	100	sucA_50	thrA	100	100	thrA_497	41	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 41:z4,z23:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032492195.1_PDT001921992.1_genomic.fna	Salmonella_enterica	0.5159	373.904 KB	5	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNNGK010000003.1 Salmonella enterica strain PNUSAS389107 SAMN37703933-rid19647853.denovo.03, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNNGK010000036.1 Salmonella enterica strain PNUSAS389107 SAMN37703933-rid19647853.guided.26, whole genome shotgun sequence	1940..2377	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNGK010000011.1 Salmonella enterica strain PNUSAS389107 SAMN37703933-rid19647853.denovo.11, whole genome shotgun sequence	38587..39229																																																																	
GCA_032492215.1_PDT001921991.1_genomic.fna	Salmonella_enterica	0.5227	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNGL010000001.1 Salmonella enterica strain PNUSAS389014 SAMN37703939-rid19649183.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNGL010000026.1 Salmonella enterica strain PNUSAS389014 SAMN37703939-rid19649183.guided.17, whole genome shotgun sequence	280..717	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNGL010000002.1	28810..29679	98.966	870	0						
GCA_032492235.1_PDT001921989.1_genomic.fna	Salmonella_enterica	0.5213	407.034 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNGN010000002.1 Salmonella enterica strain PNUSAS389104 SAMN37703928-rid19647843.denovo.02, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNGN010000046.1 Salmonella enterica strain PNUSAS389104 SAMN37703928-rid19647843.guided.29, whole genome shotgun sequence	9211..9648	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNGN010000011.1	101941..102810	99.655	870	0						
GCA_032492255.1_PDT001921990.1_genomic.fna	Salmonella_enterica	0.5225	416.69 KB	5	aroC_83,dnaN_46,hemD_25,hisD_148,purE_33,sucA_23,thrA_63	450	13:d:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_83	dnaN	100	100	dnaN_46	hemD	100	100	hemD_25	hisD	100	100	hisD_148	purE	100	100	purE_33	sucA	100	100	sucA_23	thrA	100	100	thrA_63	13	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Telelkebir		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNGM010000004.1 Salmonella enterica strain PNUSAS389102 SAMN37703926-rid19649173.denovo.04, whole genome shotgun sequence	37902..38339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNGM010000034.1 Salmonella enterica strain PNUSAS389102 SAMN37703926-rid19649173.guided.23, whole genome shotgun sequence	7868..8305	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNNGM010000002.1 Salmonella enterica strain PNUSAS389102 SAMN37703926-rid19649173.denovo.02, whole genome shotgun sequence	390281..390703	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNNGM010000035.1 Salmonella enterica strain PNUSAS389102 SAMN37703926-rid19649173.guided.25, whole genome shotgun sequence	3558..3980	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032492275.1_PDT001921988.1_genomic.fna	Salmonella_enterica	0.5211	706.19 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	-:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	-	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:m,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNGP010000001.1 Salmonella enterica strain PNUSAS389105 SAMN37703930-rid19649163.denovo.01, whole genome shotgun sequence	627669..628106	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNGP010000018.1 Salmonella enterica strain PNUSAS389105 SAMN37703930-rid19649163.guided.14, whole genome shotgun sequence	1434..1871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032492295.1_PDT001921987.1_genomic.fna	Salmonella_enterica	0.5214	647.046 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNGO010000001.1 Salmonella enterica strain PNUSAS389069 SAMN37703927-rid19647833.denovo.01, whole genome shotgun sequence	643054..643491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNGO010000022.1 Salmonella enterica strain PNUSAS389069 SAMN37703927-rid19647833.guided.19, whole genome shotgun sequence	61..498	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNGO010000002.1	495086..495954	99.425	870	0						
GCA_032492315.1_PDT001921986.1_genomic.fna	Salmonella_enterica	0.5155	352.814 KB	6	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX3	aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNNGQ010000002.1 Salmonella enterica strain PNUSAS388900 SAMN37703924-rid19649153.denovo.02, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNNGQ010000039.1 Salmonella enterica strain PNUSAS388900 SAMN37703924-rid19649153.guided.26, whole genome shotgun sequence	3818..4255	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX3	99.2	374 / 374	ABNNGQ010000019.1 Salmonella enterica strain PNUSAS388900 SAMN37703924-rid19649153.denovo.20, whole genome shotgun sequence	24322..24695																																																																	
GCA_032492335.1_PDT001921984.1_genomic.fna	Salmonella_enterica	0.5204	407.923 KB	5	aroC_41,dnaN_332,hemD_79,hisD_62,purE_28,sucA_14,thrA_96	1384	38:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_62	purE	100	100	purE_28	sucA	100	100	sucA_14	thrA	100	100	thrA_96	38	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Inverness		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNNGS010000001.1 Salmonella enterica strain PNUSAS388951 SAMN37703943-rid19647823.denovo.01, whole genome shotgun sequence	575455..575892	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNNGS010000037.1 Salmonella enterica strain PNUSAS388951 SAMN37703943-rid19647823.guided.27, whole genome shotgun sequence	4782..5219	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNNGS010000012.1 Salmonella enterica strain PNUSAS388951 SAMN37703943-rid19647823.denovo.12, whole genome shotgun sequence	109091..109733																																																						avrA	ABNNGS010000009.1	140218..141087	99.54	870	0						
GCA_032492355.1_PDT001921985.1_genomic.fna	Salmonella_enterica	0.5211	370.607 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNGR010000004.1 Salmonella enterica strain PNUSAS389103 SAMN37703925-rid19649883.denovo.04, whole genome shotgun sequence	239429..239866	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNGR010000039.1 Salmonella enterica strain PNUSAS389103 SAMN37703925-rid19649883.guided.31, whole genome shotgun sequence	1457..1894	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNGR010000011.1 Salmonella enterica strain PNUSAS389103 SAMN37703925-rid19649883.denovo.11, whole genome shotgun sequence	37290..37932	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNGR010000011.1 Salmonella enterica strain PNUSAS389103 SAMN37703925-rid19649883.denovo.11, whole genome shotgun sequence	10978..11204																																																											
GCA_032492375.1_PDT001921983.1_genomic.fna	Salmonella_enterica	0.5214	406.452 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNGT010000002.1 Salmonella enterica strain PNUSAS389101 SAMN37703929-rid19649143.denovo.02, whole genome shotgun sequence	108799..109236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNGT010000016.1 Salmonella enterica strain PNUSAS389101 SAMN37703929-rid19649143.denovo.16, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABNNGT010000016.1 Salmonella enterica strain PNUSAS389101 SAMN37703929-rid19649143.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNNGT010000001.1	553476..554345	99.54	870	0						
GCA_032492395.1_PDT001921979.1_genomic.fna	Salmonella_enterica	0.5196	231.001 KB	6	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(pCRY),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNGW010000009.1 Salmonella enterica strain PNUSAS388898 SAMN37703920-rid19647803.denovo.09, whole genome shotgun sequence	78006..78443	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNGW010000075.1 Salmonella enterica strain PNUSAS388898 SAMN37703920-rid19647803.guided.45, whole genome shotgun sequence	4089..4526	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNNGW010000024.1 Salmonella enterica strain PNUSAS388898 SAMN37703920-rid19647803.denovo.24, whole genome shotgun sequence	12562..13204	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNNGW010000030.1 Salmonella enterica strain PNUSAS388898 SAMN37703920-rid19647803.denovo.30, whole genome shotgun sequence	21066..21658		enterobacteriales	IncI1-I(Alpha)	98.6	143 / 142	ABNNGW010000027.1 Salmonella enterica strain PNUSAS388898 SAMN37703920-rid19647803.denovo.27, whole genome shotgun sequence	15202..15344																																									avrA	ABNNGW010000007.1	160497..161365	99.425	870	0						
GCA_032492415.1_PDT001921978.1_genomic.fna	Salmonella_enterica	0.5196	237.051 KB	6	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(pCRY),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNHB010000009.1 Salmonella enterica strain PNUSAS388950 SAMN37703935-rid19649113.denovo.09, whole genome shotgun sequence	77715..78152	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNHB010000083.1 Salmonella enterica strain PNUSAS388950 SAMN37703935-rid19649113.guided.32, whole genome shotgun sequence	13373..13810	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNNHB010000030.1 Salmonella enterica strain PNUSAS388950 SAMN37703935-rid19649113.denovo.31, whole genome shotgun sequence	12701..13343	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNNHB010000028.1 Salmonella enterica strain PNUSAS388950 SAMN37703935-rid19649113.denovo.29, whole genome shotgun sequence	21066..21658		enterobacteriales	IncI1-I(Alpha)	98.6	143 / 142	ABNNHB010000031.1 Salmonella enterica strain PNUSAS388950 SAMN37703935-rid19649113.denovo.33, whole genome shotgun sequence	2147..2289																																									avrA	ABNNHB010000008.1	160521..161389	99.425	870	0						
GCA_032492435.1_PDT001921975.1_genomic.fna	Salmonella_enterica	0.5161	282.211 KB	7	aroC_483,dnaN_28,hemD_355,hisD_454,purE_22,sucA_734*,thrA_30	Unknown	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_22	sucA	99.8003992015968	100	sucA_734*	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNNHA010000001.1 Salmonella enterica strain PNUSAS388899 SAMN37703921-rid19649093.denovo.01, whole genome shotgun sequence	99038..99475	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNNHA010000084.1 Salmonella enterica strain PNUSAS388899 SAMN37703921-rid19649093.guided.36, whole genome shotgun sequence	4405..4842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032492455.1_PDT001921976.1_genomic.fna	Salmonella_enterica	0.5204	365.22 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNGZ010000001.1 Salmonella enterica strain PNUSAS388966 SAMN37703923-rid19649103.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNGZ010000034.1 Salmonella enterica strain PNUSAS388966 SAMN37703923-rid19649103.guided.23, whole genome shotgun sequence	3876..4313	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNNGZ010000004.1 Salmonella enterica strain PNUSAS388966 SAMN37703923-rid19649103.denovo.04, whole genome shotgun sequence	27818..28240	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNNGZ010000036.1 Salmonella enterica strain PNUSAS388966 SAMN37703923-rid19649103.guided.27, whole genome shotgun sequence	4413..4835	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNGZ010000003.1	203441..204310	99.195	870	0						
GCA_032492475.1_PDT001921972.1_genomic.fna	Salmonella_enterica	0.5214	521.182 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNNHE010000001.1 Salmonella enterica strain PNUSAS389153 SAMN37703896-rid19647773.denovo.01, whole genome shotgun sequence	869256..869693	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNNHE010000021.1 Salmonella enterica strain PNUSAS389153 SAMN37703896-rid19647773.guided.17, whole genome shotgun sequence	697..1134	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNHE010000002.1	149711..150580	99.425	870	0						
GCA_032492495.1_PDT001921969.1_genomic.fna	Salmonella_enterica	0.521	720.901 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNHI010000001.1 Salmonella enterica strain PNUSAS388922 SAMN37703900-rid19647193.denovo.01, whole genome shotgun sequence	717478..717915	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNHI010000016.1 Salmonella enterica strain PNUSAS388922 SAMN37703900-rid19647193.guided.12, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNHI010000003.1	160628..161497	99.54	870	0						
GCA_032492515.1_PDT001921964.1_genomic.fna	Salmonella_enterica	0.523	700.943 KB	3	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNHM010000002.1 Salmonella enterica strain PNUSAS388895 SAMN37703895-rid19647753.denovo.02, whole genome shotgun sequence	666961..667398	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNHM010000027.1 Salmonella enterica strain PNUSAS388895 SAMN37703895-rid19647753.guided.18, whole genome shotgun sequence	9224..9661	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNHM010000004.1	508140..509009	99.31	870	0						
GCA_032492535.1_PDT001921956.1_genomic.fna	Salmonella_enterica	0.5211	365.404 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNHU010000001.1 Salmonella enterica strain PNUSAS388957 SAMN37703901-rid19648993.denovo.01, whole genome shotgun sequence	239429..239866	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNHU010000032.1 Salmonella enterica strain PNUSAS388957 SAMN37703901-rid19648993.guided.21, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNHU010000012.1 Salmonella enterica strain PNUSAS388957 SAMN37703901-rid19648993.denovo.12, whole genome shotgun sequence	37289..37931	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNHU010000012.1 Salmonella enterica strain PNUSAS388957 SAMN37703901-rid19648993.denovo.12, whole genome shotgun sequence	10977..11203																																																											
GCA_032492555.1_PDT001921982.1_genomic.fna	Salmonella_enterica	0.5215	301.22 KB	7	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	IncFIB(pB171),IncFII(S),IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNGU010000008.1 Salmonella enterica strain PNUSAS388956 SAMN37703942-rid19647813.denovo.08, whole genome shotgun sequence	239702..240139	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNGU010000045.1 Salmonella enterica strain PNUSAS388956 SAMN37703942-rid19647813.guided.32, whole genome shotgun sequence	1270..1707	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNGU010000016.1 Salmonella enterica strain PNUSAS388956 SAMN37703942-rid19647813.denovo.16, whole genome shotgun sequence	37293..37935	enterobacteriales	IncFII(S)	94.82	251 / 262	ABNNGU010000024.1 Salmonella enterica strain PNUSAS388956 SAMN37703942-rid19647813.denovo.24, whole genome shotgun sequence	24342..24589		enterobacteriales	IncFII(SARC14)	95.52	446 / 445	ABNNGU010000024.1 Salmonella enterica strain PNUSAS388956 SAMN37703942-rid19647813.denovo.24, whole genome shotgun sequence	23638..24082		enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNGU010000016.1 Salmonella enterica strain PNUSAS388956 SAMN37703942-rid19647813.denovo.16, whole genome shotgun sequence	10978..11204																																													
GCA_032492575.1_PDT001921981.1_genomic.fna	Salmonella_enterica	0.5186	186.769 KB	8	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNGV010000015.1 Salmonella enterica strain PNUSAS388962 SAMN37703934-rid19649133.denovo.15, whole genome shotgun sequence	80553..80990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNGV010000090.1 Salmonella enterica strain PNUSAS388962 SAMN37703934-rid19649133.guided.34, whole genome shotgun sequence	1093..1530	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNNGV010000027.1 Salmonella enterica strain PNUSAS388962 SAMN37703934-rid19649133.denovo.27, whole genome shotgun sequence	17375..18017																																																						avrA	ABNNGV010000007.1	160128..160997	99.311	871	0						
GCA_032492595.1_PDT001921980.1_genomic.fna	Salmonella_enterica	0.5214	386.193 KB	4	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_58,thrA_586	3358	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_586	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNGX010000001.1 Salmonella enterica strain PNUSAS389000 SAMN37703937-rid19649123.denovo.01, whole genome shotgun sequence	706156..706593	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNGX010000056.1 Salmonella enterica strain PNUSAS389000 SAMN37703937-rid19649123.guided.44, whole genome shotgun sequence	630..1067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNGX010000026.1 Salmonella enterica strain PNUSAS389000 SAMN37703937-rid19649123.denovo.26, whole genome shotgun sequence	11450..12092	enterobacteriales	IncFII(Yp)	91.52	224 / 230	ABNNGX010000021.1 Salmonella enterica strain PNUSAS389000 SAMN37703937-rid19649123.denovo.21, whole genome shotgun sequence	4639..4859																																																											
GCA_032492615.1_PDT001921977.1_genomic.fna	Salmonella_enterica	0.5201	309.043 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNGY010000001.1 Salmonella enterica strain PNUSAS389068 SAMN37703922-rid19647793.denovo.01, whole genome shotgun sequence	486071..486508	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNGY010000039.1 Salmonella enterica strain PNUSAS389068 SAMN37703922-rid19647793.guided.31, whole genome shotgun sequence	704..1141	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNNGY010000004.1 Salmonella enterica strain PNUSAS389068 SAMN37703922-rid19647793.denovo.04, whole genome shotgun sequence	27818..28240	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNNGY010000037.1 Salmonella enterica strain PNUSAS389068 SAMN37703922-rid19647793.guided.28, whole genome shotgun sequence	5455..5877	Fosfomycin	LAPJ01000014	fosA7	96.93	423/423	ABNNGY010000038.1 Salmonella enterica strain PNUSAS389068 SAMN37703922-rid19647793.guided.29, whole genome shotgun sequence	5455..5877	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNGY010000002.1	169368..170237	99.195	870	0						
GCA_032492635.1_PDT001921974.1_genomic.fna	Salmonella_enterica	0.5222	699.691 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNHD010000001.1 Salmonella enterica strain PNUSAS389076 SAMN37703915-rid19647783.denovo.01, whole genome shotgun sequence	510637..511074	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNHD010000020.1 Salmonella enterica strain PNUSAS389076 SAMN37703915-rid19647783.guided.18, whole genome shotgun sequence	671..1108	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNHD010000002.1	544631..545499	99.425	870	0						
GCA_032492655.1_PDT001921971.1_genomic.fna	Salmonella_enterica	0.5216	407.249 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNHF010000001.1 Salmonella enterica strain PNUSAS388987 SAMN37703916-rid19649073.denovo.01, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNHF010000056.1 Salmonella enterica strain PNUSAS388987 SAMN37703916-rid19649073.guided.42, whole genome shotgun sequence	745..1182	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNHF010000010.1	94981..95850	99.655	870	0						
GCA_032492675.1_PDT001921973.1_genomic.fna	Salmonella_enterica	0.5219	699.691 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNHC010000001.1 Salmonella enterica strain PNUSAS389013 SAMN37703888-rid19649083.denovo.01, whole genome shotgun sequence	596407..596844	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNHC010000021.1 Salmonella enterica strain PNUSAS389013 SAMN37703888-rid19649083.guided.17, whole genome shotgun sequence	1048..1485	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNHC010000002.1	544398..545266	99.425	870	0						
GCA_032492695.1_PDT001921968.1_genomic.fna	Salmonella_enterica	0.5213	489.917 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNHH010000001.1 Salmonella enterica strain PNUSAS388939 SAMN37703890-rid19649053.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNHH010000027.1 Salmonella enterica strain PNUSAS388939 SAMN37703890-rid19649053.guided.18, whole genome shotgun sequence	9232..9669	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNHH010000013.1 Salmonella enterica strain PNUSAS388939 SAMN37703890-rid19649053.denovo.13, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNNHH010000013.1 Salmonella enterica strain PNUSAS388939 SAMN37703890-rid19649053.denovo.13, whole genome shotgun sequence	4416..4677																																																avrA	ABNNHH010000002.1	584130..584999	99.54	870	0						
GCA_032492715.1_PDT001921967.1_genomic.fna	Salmonella_enterica	0.5215	259.024 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNHJ010000007.1 Salmonella enterica strain PNUSAS388984 SAMN37703899-rid19647763.denovo.07, whole genome shotgun sequence	145265..145702	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNHJ010000045.1 Salmonella enterica strain PNUSAS388984 SAMN37703899-rid19647763.guided.36, whole genome shotgun sequence	630..1067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNHJ010000004.1	95312..96180	99.77	870	0						
GCA_032492735.1_PDT001921970.1_genomic.fna	Salmonella_enterica	0.5214	520.743 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNHG010000001.1 Salmonella enterica strain PNUSAS389072 SAMN37703889-rid19649063.denovo.01, whole genome shotgun sequence	482408..482845	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNHG010000028.1 Salmonella enterica strain PNUSAS389072 SAMN37703889-rid19649063.guided.24, whole genome shotgun sequence	630..1067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNNHG010000015.1 Salmonella enterica strain PNUSAS389072 SAMN37703889-rid19649063.denovo.15, whole genome shotgun sequence	5854..6387																																																						avrA	ABNNHG010000002.1	563554..564423	99.77	870	0						
GCA_032492755.1_PDT001921965.1_genomic.fna	Salmonella_enterica	0.5224	559.945 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNHL010000001.1 Salmonella enterica strain PNUSAS388995 SAMN37703897-rid19649033.denovo.01, whole genome shotgun sequence	833755..834192	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNHL010000025.1 Salmonella enterica strain PNUSAS388995 SAMN37703897-rid19649033.guided.15, whole genome shotgun sequence	9290..9727	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNHL010000002.1	129893..130762	98.966	870	0						
GCA_032492775.1_PDT001921966.1_genomic.fna	Salmonella_enterica	0.522	559.931 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNHK010000001.1 Salmonella enterica strain PNUSAS388921 SAMN37703892-rid19649043.denovo.01, whole genome shotgun sequence	790296..790733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNHK010000032.1 Salmonella enterica strain PNUSAS388921 SAMN37703892-rid19649043.guided.21, whole genome shotgun sequence	15354..15791	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNHK010000002.1	94004..94873	98.966	870	0						
GCA_032492795.1_PDT001921962.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNHQ010000001.1 Salmonella enterica strain PNUSAS389007 SAMN37703893-rid19647743.denovo.01, whole genome shotgun sequence	856433..856870	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNHQ010000020.1 Salmonella enterica strain PNUSAS389007 SAMN37703893-rid19647743.guided.17, whole genome shotgun sequence	90..527	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABNNHQ010000002.1	553636..554505	99.54	870	0						
GCA_032492815.1_PDT001921963.1_genomic.fna	Salmonella_enterica	0.5199	276.975 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,sul2,tet(B),tet(B)	0		2	Col(pHAD28),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNHN010000007.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.denovo.07, whole genome shotgun sequence	145289..145726	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNHN010000034.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.denovo.34, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNHN010000034.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.denovo.34, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNNHN010000051.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.guided.37, whole genome shotgun sequence	3074..3910	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNHN010000051.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.guided.37, whole genome shotgun sequence	2271..3074	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNNHN010000052.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.guided.38, whole genome shotgun sequence	3074..3910	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNHN010000052.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.guided.38, whole genome shotgun sequence	2271..3074	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNNHN010000054.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.guided.45, whole genome shotgun sequence	351..788	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNNHN010000041.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.denovo.46, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNNHN010000055.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.guided.47, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNNHN010000034.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.denovo.34, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNHN010000051.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.guided.37, whole genome shotgun sequence	1395..2210	Sulfamethoxazole	HQ840942	sul2	99.88	816/816	ABNNHN010000052.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.guided.38, whole genome shotgun sequence	1395..2210	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNNHN010000029.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.denovo.29, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNHN010000053.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.guided.40, whole genome shotgun sequence	1796..3001	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																			enterobacteriales	Col(pHAD28)	93.8	129 / 131	ABNNHN010000038.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.denovo.42, whole genome shotgun sequence	1835..1963	enterobacteriales	IncX1	98.66	374 / 374	ABNNHN010000026.1 Salmonella enterica strain PNUSAS389060 SAMN37703894-rid19649023.denovo.26, whole genome shotgun sequence	6956..7329																																																avrA	ABNNHN010000001.1	587288..588157	99.885	870	0						
GCA_032492835.1_PDT001921961.1_genomic.fna	Salmonella_enterica	0.5215	557.235 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNHP010000001.1 Salmonella enterica strain PNUSAS389118 SAMN37703919-rid19647733.denovo.01, whole genome shotgun sequence	596449..596886	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNHP010000023.1 Salmonella enterica strain PNUSAS389118 SAMN37703919-rid19647733.guided.19, whole genome shotgun sequence	1048..1485	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNHP010000003.1	406371..407239	99.425	870	0						
GCA_032492855.1_PDT001921960.1_genomic.fna	Salmonella_enterica	0.521	335.214 KB	5	aroC_72,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2009	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_72	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNHO010000015.1 Salmonella enterica strain PNUSAS389119 SAMN37703914-rid19649013.denovo.15, whole genome shotgun sequence	5065..5502	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNHO010000041.1 Salmonella enterica strain PNUSAS389119 SAMN37703914-rid19649013.guided.30, whole genome shotgun sequence	1848..2285	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNHO010000002.1	93969..94838	99.31	870	0						
GCA_032492875.1_PDT001921959.1_genomic.fna	Salmonella_enterica	0.5206	413.29 KB	4	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(A),tet(A)	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNHR010000001.1 Salmonella enterica strain PNUSAS389160 SAMN37703917-rid19647723.denovo.01, whole genome shotgun sequence	173244..173681	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNHR010000028.1 Salmonella enterica strain PNUSAS389160 SAMN37703917-rid19647723.guided.19, whole genome shotgun sequence	2064..2501	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNNHR010000019.1 Salmonella enterica strain PNUSAS389160 SAMN37703917-rid19647723.denovo.23, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNNHR010000031.1 Salmonella enterica strain PNUSAS389160 SAMN37703917-rid19647723.guided.28, whole genome shotgun sequence	687..1331	Ciprofloxacin	EU432277	tet(A)	99.83	1200/1200	ABNNHR010000017.1 Salmonella enterica strain PNUSAS389160 SAMN37703917-rid19647723.denovo.17, whole genome shotgun sequence	3910..5109	Doxycycline, Tetracycline	AJ517790	tet(A)	99.83	1200/1200	ABNNHR010000027.1 Salmonella enterica strain PNUSAS389160 SAMN37703917-rid19647723.guided.18, whole genome shotgun sequence	1898..3097	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNNHR010000019.1 Salmonella enterica strain PNUSAS389160 SAMN37703917-rid19647723.denovo.23, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNNHR010000031.1 Salmonella enterica strain PNUSAS389160 SAMN37703917-rid19647723.guided.28, whole genome shotgun sequence	31..161																																																avrA	ABNNHR010000007.1	137718..138587	99.425	870	0						
GCA_032492895.1_PDT001921958.1_genomic.fna	Salmonella_enterica	0.5217	503.256 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNNHS010000001.1 Salmonella enterica strain PNUSAS388923 SAMN37703898-rid19649003.denovo.01, whole genome shotgun sequence	1339406..1339843	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNNHS010000019.1 Salmonella enterica strain PNUSAS388923 SAMN37703898-rid19649003.guided.15, whole genome shotgun sequence	4122..4559	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNHS010000002.1	149711..150580	99.425	870	0						
GCA_032492915.1_PDT001921957.1_genomic.fna	Salmonella_enterica	0.5216	477.675 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNHT010000002.1 Salmonella enterica strain PNUSAS389039 SAMN37703891-rid19647713.denovo.02, whole genome shotgun sequence	568056..568493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNHT010000055.1 Salmonella enterica strain PNUSAS389039 SAMN37703891-rid19647713.guided.24, whole genome shotgun sequence	2114..2551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNHT010000022.1 Salmonella enterica strain PNUSAS389039 SAMN37703891-rid19647713.denovo.22, whole genome shotgun sequence	5862..6504																																																						avrA	ABNNHT010000006.1	93877..94746	99.425	870	0						
GCA_032492935.1_PDT001921955.1_genomic.fna	Salmonella_enterica	0.5212	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNHW010000001.1 Salmonella enterica strain PNUSAS389161 SAMN37703918-rid19648983.denovo.01, whole genome shotgun sequence	651437..651874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNHW010000020.1 Salmonella enterica strain PNUSAS389161 SAMN37703918-rid19648983.guided.15, whole genome shotgun sequence	4157..4594	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNHW010000004.1	548111..548980	99.54	870	0						
GCA_032492955.1_PDT001921954.1_genomic.fna	Salmonella_enterica	0.5226	444.642 KB	4	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII	aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNHV010000001.1 Salmonella enterica strain PNUSAS389009 SAMN37703887-rid19647703.denovo.01, whole genome shotgun sequence	346602..347039	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNHV010000028.1 Salmonella enterica strain PNUSAS389009 SAMN37703887-rid19647703.guided.20, whole genome shotgun sequence	3826..4263	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII	100	261 / 261	ABNNHV010000013.1 Salmonella enterica strain PNUSAS389009 SAMN37703887-rid19647703.denovo.13, whole genome shotgun sequence	6307..6567																																																						avrA	ABNNHV010000004.1	95271..96140	99.425	870	0						
GCA_032492975.1_PDT001921953.1_genomic.fna	Salmonella_enterica	0.5215	333.184 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNHY010000001.1 Salmonella enterica strain PNUSAS389010 SAMN37703886-rid19648973.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNHY010000049.1 Salmonella enterica strain PNUSAS389010 SAMN37703886-rid19648973.guided.40, whole genome shotgun sequence	39..476	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNNHY010000024.1 Salmonella enterica strain PNUSAS389010 SAMN37703886-rid19648973.denovo.24, whole genome shotgun sequence	11372..12571	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNHY010000050.1 Salmonella enterica strain PNUSAS389010 SAMN37703886-rid19648973.guided.41, whole genome shotgun sequence	1019..2218	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNNHY010000051.1 Salmonella enterica strain PNUSAS389010 SAMN37703886-rid19648973.guided.42, whole genome shotgun sequence	1019..2218	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																					gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNHY010000026.1 Salmonella enterica strain PNUSAS389010 SAMN37703886-rid19648973.denovo.26, whole genome shotgun sequence	9109..9668																																																						avrA	ABNNHY010000002.1	149828..150697	99.655	870	0						
GCA_032492995.1_PDT001921952.1_genomic.fna	Salmonella_enterica	0.5204	309.05 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNHX010000002.1 Salmonella enterica strain PNUSAS388998 SAMN37703885-rid19647693.denovo.02, whole genome shotgun sequence	115544..115981	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNHX010000046.1 Salmonella enterica strain PNUSAS388998 SAMN37703885-rid19647693.guided.36, whole genome shotgun sequence	630..1067	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNNHX010000005.1 Salmonella enterica strain PNUSAS388998 SAMN37703885-rid19647693.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNNHX010000045.1 Salmonella enterica strain PNUSAS388998 SAMN37703885-rid19647693.guided.32, whole genome shotgun sequence	3650..4072	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNHX010000001.1	169368..170237	99.195	870	0						
GCA_032493015.1_PDT001921951.1_genomic.fna	Salmonella_enterica	0.5132	291.892 KB	6	aroC_451,dnaN_26,hemD_339,hisD_460,purE_21,sucA_353,thrA_471	2631	48:z52:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_451	dnaN	100	100	dnaN_26	hemD	100	100	hemD_339	hisD	100	100	hisD_460	purE	100	100	purE_21	sucA	100	100	sucA_353	thrA	100	100	thrA_471	48	z52	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:z52:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNHZ010000006.1 Salmonella enterica strain PNUSAS389126 SAMN37703883-rid19648963.denovo.06, whole genome shotgun sequence	117565..118002	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNHZ010000047.1 Salmonella enterica strain PNUSAS389126 SAMN37703883-rid19648963.guided.34, whole genome shotgun sequence	1503..1940	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNHZ010000002.1	144597..145466	96.552	870	0						
GCA_032493035.1_PDT001921950.1_genomic.fna	Salmonella_enterica	0.5225	494.743 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNNIA010000002.1 Salmonella enterica strain PNUSAS389012 SAMN37703884-rid19647683.denovo.02, whole genome shotgun sequence	145387..145824	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNNIA010000024.1 Salmonella enterica strain PNUSAS389012 SAMN37703884-rid19647683.guided.17, whole genome shotgun sequence	6822..7259	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNIA010000003.1	553822..554691	99.77	870	0						
GCA_032493055.1_PDT001921948.1_genomic.fna	Salmonella_enterica	0.5224	397.771 KB	4	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNIC010000006.1 Salmonella enterica strain PNUSAS389078 SAMN37703798-rid19648953.denovo.06, whole genome shotgun sequence	168399..168836	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNIC010000044.1 Salmonella enterica strain PNUSAS389078 SAMN37703798-rid19648953.guided.37, whole genome shotgun sequence	162..599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032493075.1_PDT001921949.1_genomic.fna	Salmonella_enterica	0.5217	518.847 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNIB010000001.1 Salmonella enterica strain PNUSAS388991 SAMN37703801-rid19647183.denovo.01, whole genome shotgun sequence	443031..443468	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNIB010000041.1 Salmonella enterica strain PNUSAS388991 SAMN37703801-rid19647183.guided.24, whole genome shotgun sequence	773..1210	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNIB010000042.1 Salmonella enterica strain PNUSAS388991 SAMN37703801-rid19647183.guided.28, whole genome shotgun sequence	773..1210	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNIB010000002.1	742902..743770	99.195	870	0						
GCA_032493095.1_PDT001921946.1_genomic.fna	Salmonella_enterica	0.5211	240.074 KB	8	aroC_42,dnaN_169,hemD_48,hisD_16,purE_12,sucA_23,thrA_4	2041	11:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncI1-I(Alpha)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_169	hemD	100	100	hemD_48	hisD	100	100	hisD_16	purE	100	100	purE_12	sucA	100	100	sucA_23	thrA	100	100	thrA_4	11	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Abaetetuba		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNID010000015.1 Salmonella enterica strain PNUSAS389180 SAMN37703814-rid19648943.denovo.15, whole genome shotgun sequence	84408..84845	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNID010000083.1 Salmonella enterica strain PNUSAS389180 SAMN37703814-rid19648943.guided.58, whole genome shotgun sequence	1495..1932	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNNID010000029.1 Salmonella enterica strain PNUSAS389180 SAMN37703814-rid19648943.denovo.29, whole genome shotgun sequence	14883..15525	enterobacteriales	IncI1-I(Alpha)	98.6	143 / 142	ABNNID010000032.1 Salmonella enterica strain PNUSAS389180 SAMN37703814-rid19648943.denovo.32, whole genome shotgun sequence	2199..2341																																																avrA	ABNNID010000001.1	457488..458357	99.54	870	0						
GCA_032493115.1_PDT001921945.1_genomic.fna	Salmonella_enterica	0.5202	590.872 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNIF010000001.1 Salmonella enterica strain PNUSAS388918 SAMN37703806-rid19647663.denovo.01, whole genome shotgun sequence	595040..595477	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNIF010000037.1 Salmonella enterica strain PNUSAS388918 SAMN37703806-rid19647663.guided.24, whole genome shotgun sequence	9224..9661	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.07	643 / 643	ABNNIF010000013.1 Salmonella enterica strain PNUSAS388918 SAMN37703806-rid19647663.denovo.13, whole genome shotgun sequence	91387..92029																																																						avrA	ABNNIF010000004.1	407534..408403	99.425	870	0						
GCA_032493135.1_PDT001921947.1_genomic.fna	Salmonella_enterica	0.5208	721.79 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNIE010000001.1 Salmonella enterica strain PNUSAS388889 SAMN37703808-rid19647673.denovo.01, whole genome shotgun sequence	406378..406815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNIE010000032.1 Salmonella enterica strain PNUSAS388889 SAMN37703808-rid19647673.guided.20, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNIE010000018.1 Salmonella enterica strain PNUSAS388889 SAMN37703808-rid19647673.denovo.19, whole genome shotgun sequence	5947..6589	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNNIE010000017.1 Salmonella enterica strain PNUSAS388889 SAMN37703808-rid19647673.denovo.17, whole genome shotgun sequence	18874..19456																																																avrA	ABNNIE010000003.1	516358..517227	99.425	870	0						
GCA_032493155.1_PDT001921944.1_genomic.fna	Salmonella_enterica	0.5226	583.378 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNNIG010000001.1 Salmonella enterica strain PNUSAS389059 SAMN37703804-rid19647653.denovo.01, whole genome shotgun sequence	145582..146019	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNNIG010000021.1 Salmonella enterica strain PNUSAS389059 SAMN37703804-rid19647653.guided.14, whole genome shotgun sequence	6324..6761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNIG010000003.1	553700..554569	99.77	870	0						
GCA_032493175.1_PDT001921943.1_genomic.fna	Salmonella_enterica	0.5146	161.616 KB	10	aroC_380,dnaN_482,hemD_276,hisD_511,purE_240,sucA_360,thrA_208	2868	40:z4,z32:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_380	dnaN	100	100	dnaN_482	hemD	100	100	hemD_276	hisD	100	100	hisD_511	purE	100	100	purE_240	sucA	100	100	sucA_360	thrA	100	100	thrA_208	40	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV [1],40:z4,z32:-	SalmID reports this as ssp VII, which has not been formally recognized.	O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032493195.1_PDT001921942.1_genomic.fna	Salmonella_enterica	0.5213	489.739 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNII010000001.1 Salmonella enterica strain PNUSAS389016 SAMN37703800-rid19647643.denovo.01, whole genome shotgun sequence	108808..109245	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNII010000025.1 Salmonella enterica strain PNUSAS389016 SAMN37703800-rid19647643.guided.17, whole genome shotgun sequence	9232..9669	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNII010000014.1 Salmonella enterica strain PNUSAS389016 SAMN37703800-rid19647643.denovo.14, whole genome shotgun sequence	49121..49763	enterobacteriales	IncFII(S)	100	262 / 262	ABNNII010000014.1 Salmonella enterica strain PNUSAS389016 SAMN37703800-rid19647643.denovo.14, whole genome shotgun sequence	4868..5129																																																avrA	ABNNII010000003.1	553181..554050	99.54	870	0						
GCA_032493215.1_PDT001921940.1_genomic.fna	Salmonella_enterica	0.5218	649.538 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNIK010000001.1 Salmonella enterica strain PNUSAS388924 SAMN37703805-rid19647633.denovo.01, whole genome shotgun sequence	422654..423091	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNIK010000044.1 Salmonella enterica strain PNUSAS388924 SAMN37703805-rid19647633.guided.25, whole genome shotgun sequence	1862..2299	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNIK010000003.1	498766..499634	99.425	870	0						
GCA_032493235.1_PDT001921941.1_genomic.fna	Salmonella_enterica	0.5235	397.914 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNIJ010000001.1 Salmonella enterica strain PNUSAS389037 SAMN37703803-rid19648923.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNIJ010000042.1 Salmonella enterica strain PNUSAS389037 SAMN37703803-rid19648923.guided.24, whole genome shotgun sequence	9232..9669	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNIJ010000003.1	143956..144825	99.655	870	0						
GCA_032493255.1_PDT001921937.1_genomic.fna	Salmonella_enterica	0.5209	720.971 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNIN010000001.1 Salmonella enterica strain PNUSAS389172 SAMN37703815-rid19647613.denovo.01, whole genome shotgun sequence	717104..717541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.75	393/438	ABNNIN010000019.1 Salmonella enterica strain PNUSAS389172 SAMN37703815-rid19647613.guided.16, whole genome shotgun sequence	1..393	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNIN010000003.1	160403..161272	99.54	870	0						
GCA_032493285.1_PDT001921939.1_genomic.fna	Salmonella_enterica	0.5171	307.349 KB	6	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNNIL010000002.1 Salmonella enterica strain PNUSAS388997 SAMN37703799-rid19647623.denovo.02, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNNIL010000056.1 Salmonella enterica strain PNUSAS388997 SAMN37703799-rid19647623.guided.39, whole genome shotgun sequence	4222..4659	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNNIL010000010.1 Salmonella enterica strain PNUSAS388997 SAMN37703799-rid19647623.denovo.10, whole genome shotgun sequence	157580..158222																																																																	
GCA_032493305.1_PDT001921938.1_genomic.fna	Salmonella_enterica	0.5218	176.408 KB	8	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNIM010000006.1 Salmonella enterica strain PNUSAS388890 SAMN37703809-rid19648913.denovo.06, whole genome shotgun sequence	83902..84339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNIM010000063.1 Salmonella enterica strain PNUSAS388890 SAMN37703809-rid19648913.guided.40, whole genome shotgun sequence	4157..4594	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNIM010000032.1 Salmonella enterica strain PNUSAS388890 SAMN37703809-rid19648913.denovo.32, whole genome shotgun sequence	4384..5026	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNIM010000037.1 Salmonella enterica strain PNUSAS388890 SAMN37703809-rid19648913.denovo.37, whole genome shotgun sequence	10978..11204																																																											
GCA_032493325.1_PDT001921936.1_genomic.fna	Salmonella_enterica	0.5203	395.197 KB	5	aroC_84,dnaN_342,hemD_256,hisD_435,purE_378,sucA_182,thrA_362	1456	18:b:1,5	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_342	hemD	100	100	hemD_256	hisD	100	100	hisD_435	purE	100	100	purE_378	sucA	100	100	sucA_182	thrA	100	100	thrA_362	18	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fluntern		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNIP010000001.1 Salmonella enterica strain PNUSAS388896 SAMN37703813-rid19648903.denovo.01, whole genome shotgun sequence	161310..161747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNIP010000067.1 Salmonella enterica strain PNUSAS388896 SAMN37703813-rid19648903.guided.30, whole genome shotgun sequence	6564..7001	Amikacin, Tobramycin	NC_003197	fosA7	99.76	423/423	ABNNIP010000002.1 Salmonella enterica strain PNUSAS388896 SAMN37703813-rid19648903.denovo.02, whole genome shotgun sequence	389544..389966	Fosfomycin	LAPJ01000014	fosA7	99.76	423/423	ABNNIP010000068.1 Salmonella enterica strain PNUSAS388896 SAMN37703813-rid19648903.guided.38, whole genome shotgun sequence	394..816	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNIP010000003.1	414337..415206	98.621	870	0						
GCA_032493345.1_PDT001921935.1_genomic.fna	Salmonella_enterica	0.5221	280.392 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNIO010000001.1 Salmonella enterica strain PNUSAS388999 SAMN37703802-rid19647603.denovo.01, whole genome shotgun sequence	591756..592193	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNIO010000043.1 Salmonella enterica strain PNUSAS388999 SAMN37703802-rid19647603.guided.32, whole genome shotgun sequence	1462..1899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNNIO010000016.1 Salmonella enterica strain PNUSAS388999 SAMN37703802-rid19647603.denovo.16, whole genome shotgun sequence	34103..34745	enterobacteriales	IncFII(S)	100	262 / 262	ABNNIO010000016.1 Salmonella enterica strain PNUSAS388999 SAMN37703802-rid19647603.denovo.16, whole genome shotgun sequence	49830..50091																																																avrA	ABNNIO010000004.1	175008..175877	99.885	870	0						
GCA_032493365.1_PDT001921932.1_genomic.fna	Salmonella_enterica	0.5218	205.759 KB	8	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNIS010000007.1 Salmonella enterica strain PNUSAS388891 SAMN37703812-rid19647583.denovo.07, whole genome shotgun sequence	83902..84339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNIS010000064.1 Salmonella enterica strain PNUSAS388891 SAMN37703812-rid19647583.guided.48, whole genome shotgun sequence	1462..1899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNIS010000030.1 Salmonella enterica strain PNUSAS388891 SAMN37703812-rid19647583.denovo.30, whole genome shotgun sequence	4384..5026	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNIS010000036.1 Salmonella enterica strain PNUSAS388891 SAMN37703812-rid19647583.denovo.36, whole genome shotgun sequence	10978..11204																																																											
GCA_032493385.1_PDT001921934.1_genomic.fna	Salmonella_enterica	0.5213	781.775 KB	3	aroC_41,dnaN_42,hemD_43,hisD_501,purE_9,sucA_12,thrA_2	1567	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(SARC14)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_501	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNIQ010000001.1 Salmonella enterica strain PNUSAS389175 SAMN37703807-rid19647593.denovo.01, whole genome shotgun sequence	672080..672517	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNIQ010000063.1 Salmonella enterica strain PNUSAS389175 SAMN37703807-rid19647593.guided.32, whole genome shotgun sequence	2057..2494	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNIQ010000007.1 Salmonella enterica strain PNUSAS389175 SAMN37703807-rid19647593.denovo.07, whole genome shotgun sequence	38587..39229	enterobacteriales	IncFII(SARC14)	95.07	446 / 445	ABNNIQ010000014.1 Salmonella enterica strain PNUSAS389175 SAMN37703807-rid19647593.denovo.14, whole genome shotgun sequence	53026..53470																																																avrA	ABNNIQ010000004.1	559678..560547	99.425	870	0						
GCA_032493405.1_PDT001921933.1_genomic.fna	Salmonella_enterica	0.5217	393.587 KB	4	aroC_22,dnaN_11,hemD_25,hisD_72,purE_655,sucA_123,thrA_4	3253	9:a:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_655	sucA	100	100	sucA_123	thrA	100	100	thrA_4	9	a	1,7	Salmonella enterica subspecies enterica (subspecies I)	Saarbruecken		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNIR010000001.1 Salmonella enterica strain PNUSAS388892 SAMN37703810-rid19648893.denovo.01, whole genome shotgun sequence	625110..625547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNIR010000026.1 Salmonella enterica strain PNUSAS388892 SAMN37703810-rid19648893.guided.19, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNIR010000002.1	139518..140387	99.425	870	0						
GCA_032493425.1_PDT001921931.1_genomic.fna	Salmonella_enterica	0.523	678.95 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNIT010000001.1 Salmonella enterica strain PNUSAS388989 SAMN37703791-rid19648883.denovo.01, whole genome shotgun sequence	170314..170751	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNIT010000026.1 Salmonella enterica strain PNUSAS388989 SAMN37703791-rid19648883.guided.20, whole genome shotgun sequence	3703..4140	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032493445.1_PDT001921930.1_genomic.fna	Salmonella_enterica	0.5171	307.473 KB	6	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNNIU010000002.1 Salmonella enterica strain PNUSAS389020 SAMN37703792-rid19647573.denovo.02, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNNIU010000056.1 Salmonella enterica strain PNUSAS389020 SAMN37703792-rid19647573.guided.33, whole genome shotgun sequence	4407..4844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNNIU010000010.1 Salmonella enterica strain PNUSAS389020 SAMN37703792-rid19647573.denovo.10, whole genome shotgun sequence	156807..157449																																																																	
GCA_032493465.1_PDT001921929.1_genomic.fna	Salmonella_enterica	0.5168	307.476 KB	6	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNNIV010000001.1 Salmonella enterica strain PNUSAS388986 SAMN37703795-rid19647563.denovo.01, whole genome shotgun sequence	197676..198113	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNNIV010000065.1 Salmonella enterica strain PNUSAS388986 SAMN37703795-rid19647563.guided.40, whole genome shotgun sequence	1080..1517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNNIV010000012.1 Salmonella enterica strain PNUSAS388986 SAMN37703795-rid19647563.denovo.12, whole genome shotgun sequence	117011..117653	enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABNNIV010000030.1 Salmonella enterica strain PNUSAS388986 SAMN37703795-rid19647563.denovo.30, whole genome shotgun sequence	8801..9393																																																											
GCA_032493485.1_PDT001921928.1_genomic.fna	Salmonella_enterica	0.521	229.26 KB	7	aroC_13,dnaN_109,hemD_49,hisD_13,purE_220,sucA_13,thrA_4	754	30:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(pCRY),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_220	sucA	100	100	sucA_13	thrA	100	100	thrA_4	30	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Urbana		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNIW010000008.1 Salmonella enterica strain PNUSAS389021 SAMN37703793-rid19648873.denovo.08, whole genome shotgun sequence	37923..38360	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNIW010000073.1 Salmonella enterica strain PNUSAS389021 SAMN37703793-rid19648873.guided.44, whole genome shotgun sequence	8200..8637	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNNIW010000035.1 Salmonella enterica strain PNUSAS389021 SAMN37703793-rid19648873.denovo.35, whole genome shotgun sequence	12895..13537	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNNIW010000033.1 Salmonella enterica strain PNUSAS389021 SAMN37703793-rid19648873.denovo.33, whole genome shotgun sequence	1664..2256		enterobacteriales	IncI1-I(Alpha)	98.6	143 / 142	ABNNIW010000029.1 Salmonella enterica strain PNUSAS389021 SAMN37703793-rid19648873.denovo.29, whole genome shotgun sequence	13372..13514																																									avrA	ABNNIW010000002.1	95271..96140	99.425	870	0						
GCA_032493505.1_PDT001921927.1_genomic.fna	Salmonella_enterica	0.5209	721.08 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNIX010000001.1 Salmonella enterica strain PNUSAS388992 SAMN37703796-rid19647553.denovo.01, whole genome shotgun sequence	717883..718320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNIX010000018.1 Salmonella enterica strain PNUSAS388992 SAMN37703796-rid19647553.guided.15, whole genome shotgun sequence	2921..3358	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNIX010000004.1	160417..161286	99.54	870	0						
GCA_032493525.1_PDT001921926.1_genomic.fna	Salmonella_enterica	0.521	382.677 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNIY010000001.1 Salmonella enterica strain PNUSAS389018 SAMN37703794-rid19648863.denovo.01, whole genome shotgun sequence	168054..168491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNIY010000038.1 Salmonella enterica strain PNUSAS389018 SAMN37703794-rid19648863.guided.25, whole genome shotgun sequence	2062..2499	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNIY010000002.1	144915..145784	99.31	870	0						
GCA_032493545.1_PDT001921924.1_genomic.fna	Salmonella_enterica	0.5221	496.516 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNIZ010000001.1 Salmonella enterica strain PNUSAS389177 SAMN37703773-rid19647533.denovo.01, whole genome shotgun sequence	111759..112196	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNIZ010000027.1 Salmonella enterica strain PNUSAS389177 SAMN37703773-rid19647533.guided.20, whole genome shotgun sequence	2933..3370	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNIZ010000003.1	158051..158920	98.966	870	0						
GCA_032493565.1_PDT001921923.1_genomic.fna	Salmonella_enterica	0.5219	682.665 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNJB010000001.1 Salmonella enterica strain PNUSAS389136 SAMN37703763-rid19648853.denovo.01, whole genome shotgun sequence	116832..117269	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNJB010000019.1 Salmonella enterica strain PNUSAS389136 SAMN37703763-rid19648853.guided.15, whole genome shotgun sequence	4605..5042	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNJB010000002.1	544398..545266	99.425	870	0						
GCA_032493585.1_PDT001921922.1_genomic.fna	Salmonella_enterica	0.5221	693.169 KB	2	aroC_16,dnaN_16,hemD_20,hisD_1044,purE_8,sucA_12,thrA_18	4856	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_1044	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNJC010000001.1 Salmonella enterica strain PNUSAS388964 SAMN37703778-rid19647523.denovo.01, whole genome shotgun sequence	657589..658026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNJC010000019.1 Salmonella enterica strain PNUSAS388964 SAMN37703778-rid19647523.guided.11, whole genome shotgun sequence	13373..13810	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNJC010000002.1	182066..182932	98.966	870	0						
GCA_032493605.1_PDT001921921.1_genomic.fna	Salmonella_enterica	0.521	346.247 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_1	1838	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNJD010000002.1 Salmonella enterica strain PNUSAS388940 SAMN37703769-rid19648843.denovo.02, whole genome shotgun sequence	112894..113331	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNJD010000043.1 Salmonella enterica strain PNUSAS388940 SAMN37703769-rid19648843.guided.26, whole genome shotgun sequence	3491..3928	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNNJD010000018.1 Salmonella enterica strain PNUSAS388940 SAMN37703769-rid19648843.denovo.18, whole genome shotgun sequence	34958..35491																																																						avrA	ABNNJD010000006.1	188669..189534	98.851	870	0						
GCA_032493625.1_PDT001921925.1_genomic.fna	Salmonella_enterica	0.5203	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNNJA010000010.1 Salmonella enterica strain PNUSAS389019 SAMN37703797-rid19647543.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNNJA010000056.1 Salmonella enterica strain PNUSAS389019 SAMN37703797-rid19647543.guided.48, whole genome shotgun sequence	704..1138	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032493645.1_PDT001921918.1_genomic.fna	Salmonella_enterica	0.5166	280.03 KB	7	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNNJH010000001.1 Salmonella enterica strain PNUSAS389138 SAMN37703770-rid19649873.denovo.01, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNNJH010000060.1 Salmonella enterica strain PNUSAS389138 SAMN37703770-rid19649873.guided.51, whole genome shotgun sequence	241..678	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNNJH010000012.1 Salmonella enterica strain PNUSAS389138 SAMN37703770-rid19649873.denovo.12, whole genome shotgun sequence	133585..134227	enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABNNJH010000030.1 Salmonella enterica strain PNUSAS389138 SAMN37703770-rid19649873.denovo.30, whole genome shotgun sequence	2327..2919																																																											
GCA_032493655.1_PDT001921920.1_genomic.fna	Salmonella_enterica	0.5223	396.511 KB	4	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNJE010000003.1 Salmonella enterica strain PNUSAS388994 SAMN37703774-rid19647513.denovo.03, whole genome shotgun sequence	259282..259719	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNJE010000039.1 Salmonella enterica strain PNUSAS388994 SAMN37703774-rid19647513.guided.28, whole genome shotgun sequence	2070..2507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNJE010000002.1	509201..510070	99.77	870	0						
GCA_032493685.1_PDT001921919.1_genomic.fna	Salmonella_enterica	0.5215	465.969 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNJG010000001.1 Salmonella enterica strain PNUSAS389134 SAMN37703766-rid19647503.denovo.01, whole genome shotgun sequence	839184..839621	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNJG010000027.1 Salmonella enterica strain PNUSAS389134 SAMN37703766-rid19647503.guided.21, whole genome shotgun sequence	785..1222	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNJG010000010.1	93876..94746	99.196	871	0						
GCA_032493705.1_PDT001921917.1_genomic.fna	Salmonella_enterica	0.5226	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNJF010000001.1 Salmonella enterica strain PNUSAS389030 SAMN37703776-rid19647493.denovo.01, whole genome shotgun sequence	834983..835420	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNJF010000027.1 Salmonella enterica strain PNUSAS389030 SAMN37703776-rid19647493.guided.23, whole genome shotgun sequence	39..476	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNJF010000002.1	28876..29745	98.966	870	0						
GCA_032493725.1_PDT001921915.1_genomic.fna	Salmonella_enterica	0.5219	439.575 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNJJ010000001.1 Salmonella enterica strain PNUSAS389137 SAMN37703768-rid19647483.denovo.01, whole genome shotgun sequence	407341..407778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNJJ010000029.1 Salmonella enterica strain PNUSAS389137 SAMN37703768-rid19647483.guided.21, whole genome shotgun sequence	4157..4594	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNJJ010000002.1	514737..515605	99.195	870	0						
GCA_032493745.1_PDT001921916.1_genomic.fna	Salmonella_enterica	0.522	696.395 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNJI010000001.1 Salmonella enterica strain PNUSAS389028 SAMN37703761-rid19648833.denovo.01, whole genome shotgun sequence	643223..643660	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNJI010000019.1 Salmonella enterica strain PNUSAS389028 SAMN37703761-rid19648833.guided.12, whole genome shotgun sequence	2067..2504	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNJI010000002.1	544541..545409	99.425	870	0						
GCA_032493765.1_PDT001921914.1_genomic.fna	Salmonella_enterica	0.5211	696.287 KB	3	aroC_13,dnaN_11,hemD_315,hisD_15,purE_12,sucA_15,thrA_4	1675	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_315	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNJK010000001.1 Salmonella enterica strain PNUSAS389139 SAMN37703765-rid19647473.denovo.01, whole genome shotgun sequence	682325..682762	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNJK010000017.1 Salmonella enterica strain PNUSAS389139 SAMN37703765-rid19647473.guided.12, whole genome shotgun sequence	9224..9661	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032493785.1_PDT001921913.1_genomic.fna	Salmonella_enterica	0.5207	491.866 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNJL010000002.1 Salmonella enterica strain PNUSAS388932 SAMN37703772-rid19648823.denovo.02, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNJL010000037.1 Salmonella enterica strain PNUSAS388932 SAMN37703772-rid19648823.guided.19, whole genome shotgun sequence	24488..24925	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNJL010000011.1	101941..102810	99.655	870	0						
GCA_032493805.1_PDT001921912.1_genomic.fna	Salmonella_enterica	0.5223	396.51 KB	4	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNJM010000003.1 Salmonella enterica strain PNUSAS389027 SAMN37703762-rid19647463.denovo.03, whole genome shotgun sequence	139980..140417	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNJM010000035.1 Salmonella enterica strain PNUSAS389027 SAMN37703762-rid19647463.guided.29, whole genome shotgun sequence	652..1089	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNJM010000002.1	509201..510070	99.77	870	0						
GCA_032493825.1_PDT001921911.1_genomic.fna	Salmonella_enterica	0.5218	465.699 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNJP010000001.1 Salmonella enterica strain PNUSAS389178 SAMN37703771-rid19648813.denovo.01, whole genome shotgun sequence	639284..639721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNJP010000036.1 Salmonella enterica strain PNUSAS389178 SAMN37703771-rid19648813.guided.24, whole genome shotgun sequence	588..1025	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNJP010000003.1	394798..395666	99.425	870	0						
GCA_032493845.1_PDT001921910.1_genomic.fna	Salmonella_enterica	0.5213	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNJO010000001.1 Salmonella enterica strain PNUSAS389176 SAMN37703775-rid19647453.denovo.01, whole genome shotgun sequence	717883..718320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNJO010000018.1 Salmonella enterica strain PNUSAS389176 SAMN37703775-rid19647453.guided.12, whole genome shotgun sequence	2726..3163	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNJO010000004.1	160455..161324	99.54	870	0						
GCA_032493865.1_PDT001921909.1_genomic.fna	Salmonella_enterica	0.5217	727.351 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNJN010000001.1 Salmonella enterica strain PNUSAS388965 SAMN37703777-rid19647443.denovo.01, whole genome shotgun sequence	596407..596844	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNJN010000020.1 Salmonella enterica strain PNUSAS388965 SAMN37703777-rid19647443.guided.16, whole genome shotgun sequence	4157..4594	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNJN010000003.1	544607..545475	99.425	870	0						
GCA_032493885.1_PDT001921908.1_genomic.fna	Salmonella_enterica	0.522	496.517 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNJS010000001.1 Salmonella enterica strain PNUSAS388934 SAMN37703759-rid19649863.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNJS010000026.1 Salmonella enterica strain PNUSAS388934 SAMN37703759-rid19649863.guided.16, whole genome shotgun sequence	3891..4328	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNJS010000027.1 Salmonella enterica strain PNUSAS388934 SAMN37703759-rid19649863.guided.17, whole genome shotgun sequence	3891..4328	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNNJS010000012.1 Salmonella enterica strain PNUSAS388934 SAMN37703759-rid19649863.denovo.12, whole genome shotgun sequence	69103..69244																																																						avrA	ABNNJS010000002.1	157170..158039	98.966	870	0						
GCA_032493905.1_PDT001921907.1_genomic.fna	Salmonella_enterica	0.5207	337.993 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNJQ010000001.1 Salmonella enterica strain PNUSAS389135 SAMN37703764-rid19647433.denovo.01, whole genome shotgun sequence	800277..800714	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNJQ010000035.1 Salmonella enterica strain PNUSAS389135 SAMN37703764-rid19647433.guided.29, whole genome shotgun sequence	630..1067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNJQ010000002.1	551339..552208	99.195	870	0						
GCA_032493925.1_PDT001921906.1_genomic.fna	Salmonella_enterica	0.5208	389.911 KB	6	aroC_42,dnaN_11,hemD_48,hisD_149,purE_12,sucA_13,thrA_4	1575	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNJT010000009.1 Salmonella enterica strain PNUSAS388880 SAMN37703767-rid19648803.denovo.09, whole genome shotgun sequence	148192..148629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNJT010000064.1 Salmonella enterica strain PNUSAS388880 SAMN37703767-rid19648803.guided.27, whole genome shotgun sequence	12609..13046	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNNJT010000024.1 Salmonella enterica strain PNUSAS388880 SAMN37703767-rid19648803.denovo.24, whole genome shotgun sequence	17287..17929																																																																	
GCA_032493945.1_PDT001921905.1_genomic.fna	Salmonella_enterica	0.5222	225.629 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNJR010000002.1 Salmonella enterica strain PNUSAS389026 SAMN37703760-rid19647423.denovo.02, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNJR010000037.1 Salmonella enterica strain PNUSAS389026 SAMN37703760-rid19647423.guided.29, whole genome shotgun sequence	280..717	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNNJR010000017.1 Salmonella enterica strain PNUSAS389026 SAMN37703760-rid19647423.denovo.17, whole genome shotgun sequence	43973..44615	enterobacteriales	IncFII(S)	100	262 / 262	ABNNJR010000017.1 Salmonella enterica strain PNUSAS389026 SAMN37703760-rid19647423.denovo.17, whole genome shotgun sequence	59700..59961																																																avrA	ABNNJR010000003.1	174641..175510	99.885	870	0						
GCA_032493965.1_PDT001921904.1_genomic.fna	Salmonella_enterica	0.5212	720.971 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNJU010000001.1 Salmonella enterica strain PNUSAS389173 SAMN37703753-rid19647413.denovo.01, whole genome shotgun sequence	416390..416827	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNJU010000017.1 Salmonella enterica strain PNUSAS389173 SAMN37703753-rid19647413.guided.13, whole genome shotgun sequence	2064..2501	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNJU010000003.1	160310..161179	99.54	870	0						
GCA_032493985.1_PDT001921903.1_genomic.fna	Salmonella_enterica	0.5216	300.966 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,qnrS1,qnrS1,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.D87Y	1	IncFII	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNJW010000001.1 Salmonella enterica strain PNUSAS389025 SAMN37703758-rid19648793.denovo.01, whole genome shotgun sequence	392621..393058	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNJW010000055.1 Salmonella enterica strain PNUSAS389025 SAMN37703758-rid19648793.guided.40, whole genome shotgun sequence	3274..3711	Amikacin, Tobramycin	NC_003197	qnrS1	100	657/657	ABNNJW010000021.1 Salmonella enterica strain PNUSAS389025 SAMN37703758-rid19648793.denovo.21, whole genome shotgun sequence	49012..49668	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNJW010000057.1 Salmonella enterica strain PNUSAS389025 SAMN37703758-rid19648793.guided.42, whole genome shotgun sequence	1054..1710	Ciprofloxacin	AB187515	tet(A)	99.92	1200/1200	ABNNJW010000021.1 Salmonella enterica strain PNUSAS389025 SAMN37703758-rid19648793.denovo.21, whole genome shotgun sequence	43158..44357	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNNJW010000054.1 Salmonella enterica strain PNUSAS389025 SAMN37703758-rid19648793.guided.37, whole genome shotgun sequence	1282..2481	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNJW010000044.1 Salmonella enterica strain PNUSAS389025 SAMN37703758-rid19648793.denovo.49, whole genome shotgun sequence	6..479	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNJW010000058.1 Salmonella enterica strain PNUSAS389025 SAMN37703758-rid19648793.guided.51, whole genome shotgun sequence	1201..1674	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																																																																																gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFII	99.62	261 / 261	ABNNJW010000021.1 Salmonella enterica strain PNUSAS389025 SAMN37703758-rid19648793.denovo.21, whole genome shotgun sequence	34291..34551																																																						avrA	ABNNJW010000006.1	94138..95007	99.885	870	0						
GCA_032494005.1_PDT001921902.1_genomic.fna	Salmonella_enterica	0.5206	333.062 KB	6	aroC_84,dnaN_76,hemD_38,hisD_16,purE_698,sucA_13,thrA_4	3622	6,14:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(S)	aroC	100	100	aroC_84	dnaN	100	100	dnaN_76	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_698	sucA	100	100	sucA_13	thrA	100	100	thrA_4	6,14	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Carrau		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNJX010000003.1 Salmonella enterica strain PNUSAS389024 SAMN37703757-rid19647403.denovo.03, whole genome shotgun sequence	427775..428212	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNJX010000057.1 Salmonella enterica strain PNUSAS389024 SAMN37703757-rid19647403.guided.47, whole genome shotgun sequence	704..1141	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNJX010000035.1 Salmonella enterica strain PNUSAS389024 SAMN37703757-rid19647403.denovo.36, whole genome shotgun sequence	2380..3022	enterobacteriales	IncFII(S)	91.98	262 / 262	ABNNJX010000033.1 Salmonella enterica strain PNUSAS389024 SAMN37703757-rid19647403.denovo.34, whole genome shotgun sequence	2490..2748																																																avrA	ABNNJX010000001.1	157292..158161	98.966	870	0						
GCA_032494025.1_PDT001921901.1_genomic.fna	Salmonella_enterica	0.5229	496.516 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNJV010000001.1 Salmonella enterica strain PNUSAS389179 SAMN37703755-rid19648783.denovo.01, whole genome shotgun sequence	111743..112180	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNJV010000027.1 Salmonella enterica strain PNUSAS389179 SAMN37703755-rid19648783.guided.18, whole genome shotgun sequence	768..1205	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNJV010000003.1	28810..29679	98.966	870	0						
GCA_032494045.1_PDT001921900.1_genomic.fna	Salmonella_enterica	0.517	270.598 KB	7	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNNKA010000005.1 Salmonella enterica strain PNUSAS389022 SAMN37703754-rid19647393.denovo.05, whole genome shotgun sequence	126654..127091	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNNKA010000054.1 Salmonella enterica strain PNUSAS389022 SAMN37703754-rid19647393.guided.43, whole genome shotgun sequence	1710..2147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNNKA010000012.1 Salmonella enterica strain PNUSAS389022 SAMN37703754-rid19647393.denovo.12, whole genome shotgun sequence	167611..168253																																																																	
GCA_032494065.1_PDT001921899.1_genomic.fna	Salmonella_enterica	0.5213	492.512 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNJY010000001.1 Salmonella enterica strain PNUSAS389023 SAMN37703756-rid19647383.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNJY010000025.1 Salmonella enterica strain PNUSAS389023 SAMN37703756-rid19647383.guided.20, whole genome shotgun sequence	656..1093	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNJY010000013.1 Salmonella enterica strain PNUSAS389023 SAMN37703756-rid19647383.denovo.13, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNNJY010000013.1 Salmonella enterica strain PNUSAS389023 SAMN37703756-rid19647383.denovo.13, whole genome shotgun sequence	4416..4677																																																avrA	ABNNJY010000002.1	553186..554055	99.54	870	0						
GCA_032494085.1_PDT001921898.1_genomic.fna	Salmonella_enterica	0.5216	262.291 KB	5	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNJZ010000003.1 Salmonella enterica strain PNUSAS389133 SAMN37703732-rid19648773.denovo.03, whole genome shotgun sequence	497633..498070	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.01	402/438	ABNNJZ010000045.1 Salmonella enterica strain PNUSAS389133 SAMN37703732-rid19648773.guided.40, whole genome shotgun sequence	1..402	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNJZ010000001.1	555170..556039	99.31	870	0						
GCA_032494105.1_PDT001921896.1_genomic.fna	Salmonella_enterica	0.5202	207.445 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	0		2	IncFII(pHN7A8),IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNKC010000001.1 Salmonella enterica strain PNUSAS388894 SAMN37703736-rid19647363.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNKC010000053.1 Salmonella enterica strain PNUSAS388894 SAMN37703736-rid19647363.guided.39, whole genome shotgun sequence	9216..9653	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNNKC010000026.1 Salmonella enterica strain PNUSAS388894 SAMN37703736-rid19647363.denovo.26, whole genome shotgun sequence	32196..33056	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNNKC010000052.1 Salmonella enterica strain PNUSAS388894 SAMN37703736-rid19647363.guided.37, whole genome shotgun sequence	3551..4411	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFII(pHN7A8)	96.92	260 / 260	ABNNKC010000026.1 Salmonella enterica strain PNUSAS388894 SAMN37703736-rid19647363.denovo.26, whole genome shotgun sequence	24559..24818	enterobacteriales	IncI2(Delta)	97.15	316 / 316	ABNNKC010000023.1 Salmonella enterica strain PNUSAS388894 SAMN37703736-rid19647363.denovo.23, whole genome shotgun sequence	30578..30893																																																avrA	ABNNKC010000005.1	94139..95007	99.77	870	0						
GCA_032494125.1_PDT001921897.1_genomic.fna	Salmonella_enterica	0.5212	505.483 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNKB010000001.1 Salmonella enterica strain PNUSAS389034 SAMN37703741-rid19647373.denovo.01, whole genome shotgun sequence	717104..717541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNKB010000019.1 Salmonella enterica strain PNUSAS389034 SAMN37703741-rid19647373.guided.16, whole genome shotgun sequence	200..637	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNKB010000006.1	160415..161284	99.54	870	0						
GCA_032494145.1_PDT001921895.1_genomic.fna	Salmonella_enterica	0.5223	762.445 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNNKD010000001.1 Salmonella enterica strain PNUSAS388973 SAMN37703719-rid19647353.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNNKD010000018.1 Salmonella enterica strain PNUSAS388973 SAMN37703719-rid19647353.guided.14, whole genome shotgun sequence	9846..10283	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNKD010000004.1	553839..554708	99.77	870	0						
GCA_032494165.1_PDT001921893.1_genomic.fna	Salmonella_enterica	0.5224	493.462 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNNKE010000008.1 Salmonella enterica strain PNUSAS389181 SAMN37703727-rid19648763.denovo.08, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNNKE010000027.1 Salmonella enterica strain PNUSAS389181 SAMN37703727-rid19648763.guided.20, whole genome shotgun sequence	1048..1485	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNKE010000003.1	553828..554697	99.77	870	0						
GCA_032494185.1_PDT001921894.1_genomic.fna	Salmonella_enterica	0.5214	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNKF010000001.1 Salmonella enterica strain PNUSAS389165 SAMN37703738-rid19647173.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNKF010000027.1 Salmonella enterica strain PNUSAS389165 SAMN37703738-rid19647173.guided.22, whole genome shotgun sequence	887..1324	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNKF010000013.1 Salmonella enterica strain PNUSAS389165 SAMN37703738-rid19647173.denovo.13, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABNNKF010000013.1 Salmonella enterica strain PNUSAS389165 SAMN37703738-rid19647173.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNNKF010000002.1	553486..554355	99.54	870	0						
GCA_032494205.1_PDT001921891.1_genomic.fna	Salmonella_enterica	0.5198	175.077 KB	8	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNKH010000012.1 Salmonella enterica strain PNUSAS389004 SAMN37703734-rid19648753.denovo.12, whole genome shotgun sequence	97728..98165	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNKH010000057.1 Salmonella enterica strain PNUSAS389004 SAMN37703734-rid19648753.guided.44, whole genome shotgun sequence	983..1420	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNKH010000001.1	506550..507419	99.31	870	0						
GCA_032494225.1_PDT001921892.1_genomic.fna	Salmonella_enterica	0.5217	466.487 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNKG010000001.1 Salmonella enterica strain PNUSAS388972 SAMN37703721-rid19647163.denovo.01, whole genome shotgun sequence	839184..839621	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNKG010000028.1 Salmonella enterica strain PNUSAS388972 SAMN37703721-rid19647163.guided.21, whole genome shotgun sequence	2877..3314	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNKG010000010.1	93876..94746	99.196	871	0						
GCA_032494245.1_PDT001921890.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNKI010000009.1 Salmonella enterica strain PNUSAS389130 SAMN37703733-rid19647343.denovo.09, whole genome shotgun sequence	104088..104525	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNKI010000027.1 Salmonella enterica strain PNUSAS389130 SAMN37703733-rid19647343.guided.24, whole genome shotgun sequence	71..508	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNKI010000015.1 Salmonella enterica strain PNUSAS389130 SAMN37703733-rid19647343.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNNKI010000015.1 Salmonella enterica strain PNUSAS389130 SAMN37703733-rid19647343.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNNKI010000003.1	553636..554505	99.54	870	0						
GCA_032494265.1_PDT001921887.1_genomic.fna	Salmonella_enterica	0.5224	613.264 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNNKL010000003.1 Salmonella enterica strain PNUSAS389184 SAMN37703735-rid19647333.denovo.03, whole genome shotgun sequence	145489..145926	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNNKL010000022.1 Salmonella enterica strain PNUSAS389184 SAMN37703735-rid19647333.guided.16, whole genome shotgun sequence	4453..4890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNKL010000002.1	553578..554447	99.77	870	0						
GCA_032494285.1_PDT001921889.1_genomic.fna	Salmonella_enterica	0.522	649.123 KB	2	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNNKJ010000001.1 Salmonella enterica strain PNUSAS389033 SAMN37703739-rid19648743.denovo.01, whole genome shotgun sequence	1339534..1339971	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNNKJ010000018.1 Salmonella enterica strain PNUSAS389033 SAMN37703739-rid19648743.guided.13, whole genome shotgun sequence	221..658	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNKJ010000002.1	149711..150580	99.425	870	0						
GCA_032494305.1_PDT001921888.1_genomic.fna	Salmonella_enterica	0.5226	391.316 KB	3	aroC_543,dnaN_69,hemD_101,hisD_12,purE_370,sucA_130,thrA_347	2553	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_543	dnaN	100	100	dnaN_69	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_370	sucA	100	100	sucA_130	thrA	100	100	thrA_347	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNNKK010000001.1 Salmonella enterica strain PNUSAS388920 SAMN37703724-rid19648733.denovo.01, whole genome shotgun sequence	639453..639890	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNNKK010000020.1 Salmonella enterica strain PNUSAS388920 SAMN37703724-rid19648733.guided.16, whole genome shotgun sequence	13856..14293	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNKK010000002.1	514148..515017	99.31	870	0						
GCA_032494325.1_PDT001921886.1_genomic.fna	Salmonella_enterica	0.5208	353.077 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNKN010000001.1 Salmonella enterica strain PNUSAS388931 SAMN37703737-rid19647323.denovo.001, whole genome shotgun sequence	600242..600679	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNKN010000115.1 Salmonella enterica strain PNUSAS388931 SAMN37703737-rid19647323.guided.021, whole genome shotgun sequence	8370..8807	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNKN010000025.1 Salmonella enterica strain PNUSAS388931 SAMN37703737-rid19647323.denovo.026, whole genome shotgun sequence	11438..12080																																																						avrA	ABNNKN010000004.1	100479..101348	99.195	870	0						
GCA_032494345.1_PDT001921885.1_genomic.fna	Salmonella_enterica	0.5211	535.45 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncR,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNNKM010000004.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.denovo.04, whole genome shotgun sequence	150014..150451	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNNKM010000023.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.denovo.23, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNNKM010000038.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.guided.33, whole genome shotgun sequence	653..1090	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNNKM010000042.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.guided.38, whole genome shotgun sequence	112..891	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNNKM010000023.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.denovo.23, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNNKM010000039.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.guided.34, whole genome shotgun sequence	209..1075	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNNKM010000022.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.denovo.22, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNNKM010000041.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.guided.36, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNNKM010000021.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.denovo.21, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNNKM010000034.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.guided.28, whole genome shotgun sequence	265..1478	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNNKM010000023.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.denovo.23, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNNKM010000040.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.guided.35, whole genome shotgun sequence	317..973	Ciprofloxacin	AY070235	sul1	100	840/840	ABNNKM010000026.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.denovo.32, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNKM010000037.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.guided.31, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNNKM010000021.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.denovo.21, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNNKM010000036.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.guided.30, whole genome shotgun sequence	67..1341	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNNKM010000021.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.denovo.21, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNNKM010000035.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.guided.29, whole genome shotgun sequence	1091..1564	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNNKM010000019.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.denovo.19, whole genome shotgun sequence	4434..4684	enterobacteriales	IncX1	94.92	374 / 374	ABNNKM010000015.1 Salmonella enterica strain PNUSAS389032 SAMN37703740-rid19647313.denovo.15, whole genome shotgun sequence	13796..14169																																																avrA	ABNNKM010000001.1	585449..586318	99.77	870	0						
GCA_032494365.1_PDT001921884.1_genomic.fna	Salmonella_enterica	0.5227	333.194 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNKO010000001.1 Salmonella enterica strain PNUSAS388947 SAMN37703726-rid19647303.denovo.01, whole genome shotgun sequence	616195..616632	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNKO010000032.1 Salmonella enterica strain PNUSAS388947 SAMN37703726-rid19647303.guided.22, whole genome shotgun sequence	2279..2716	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNKO010000002.1	149923..150792	99.77	870	0						
GCA_032494385.1_PDT001921883.1_genomic.fna	Salmonella_enterica	0.5224	324.704 KB	6	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNNKQ010000002.1 Salmonella enterica strain PNUSAS388963 SAMN37703720-rid19648723.denovo.02, whole genome shotgun sequence	378504..378941	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNNKQ010000043.1 Salmonella enterica strain PNUSAS388963 SAMN37703720-rid19648723.guided.25, whole genome shotgun sequence	9216..9653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNNKQ010000013.1 Salmonella enterica strain PNUSAS388963 SAMN37703720-rid19648723.denovo.13, whole genome shotgun sequence	83026..83167																																																						avrA	ABNNKQ010000010.1	145454..146323	99.425	870	0						
GCA_032494405.1_PDT001921882.1_genomic.fna	Salmonella_enterica	0.5166	307.473 KB	6	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNNKP010000005.1 Salmonella enterica strain PNUSAS389182 SAMN37703728-rid19647293.denovo.05, whole genome shotgun sequence	148054..148491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNNKP010000058.1 Salmonella enterica strain PNUSAS389182 SAMN37703728-rid19647293.guided.38, whole genome shotgun sequence	3777..4214	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNNKP010000011.1 Salmonella enterica strain PNUSAS389182 SAMN37703728-rid19647293.denovo.11, whole genome shotgun sequence	157674..158316																																																																	
GCA_032494425.1_PDT001921881.1_genomic.fna	Salmonella_enterica	0.5206	223.811 KB	8	aroC_11,dnaN_10,hemD_25,hisD_1003,purE_10,sucA_35,thrA_4	4599	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_1003	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNKR010000014.1 Salmonella enterica strain PNUSAS389183 SAMN37703729-rid19648713.denovo.14, whole genome shotgun sequence	56003..56440	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNKR010000069.1 Salmonella enterica strain PNUSAS389183 SAMN37703729-rid19648713.guided.42, whole genome shotgun sequence	2609..3046	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNKR010000033.1 Salmonella enterica strain PNUSAS389183 SAMN37703729-rid19648713.denovo.33, whole genome shotgun sequence	11446..12088																																																																	
GCA_032494445.1_PDT001921880.1_genomic.fna	Salmonella_enterica	0.5197	348.362 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	Col(pHAD28),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNKS010000001.1 Salmonella enterica strain PNUSAS388971 SAMN37703718-rid19647283.denovo.01, whole genome shotgun sequence	145374..145811	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNKS010000028.1 Salmonella enterica strain PNUSAS388971 SAMN37703718-rid19647283.denovo.33, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNKS010000028.1 Salmonella enterica strain PNUSAS388971 SAMN37703718-rid19647283.denovo.33, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNNKS010000043.1 Salmonella enterica strain PNUSAS388971 SAMN37703718-rid19647283.guided.26, whole genome shotgun sequence	2064..2501	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNKS010000047.1 Salmonella enterica strain PNUSAS388971 SAMN37703718-rid19647283.guided.32, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNKS010000047.1 Salmonella enterica strain PNUSAS388971 SAMN37703718-rid19647283.guided.32, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNNKS010000037.1 Salmonella enterica strain PNUSAS388971 SAMN37703718-rid19647283.denovo.43, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNNKS010000048.1 Salmonella enterica strain PNUSAS388971 SAMN37703718-rid19647283.guided.42, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNNKS010000028.1 Salmonella enterica strain PNUSAS388971 SAMN37703718-rid19647283.denovo.33, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNKS010000047.1 Salmonella enterica strain PNUSAS388971 SAMN37703718-rid19647283.guided.32, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNNKS010000027.1 Salmonella enterica strain PNUSAS388971 SAMN37703718-rid19647283.denovo.29, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNKS010000046.1 Salmonella enterica strain PNUSAS388971 SAMN37703718-rid19647283.guided.31, whole genome shotgun sequence	1592..2797	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	93.8	129 / 131	ABNNKS010000033.1 Salmonella enterica strain PNUSAS388971 SAMN37703718-rid19647283.denovo.38, whole genome shotgun sequence	1835..1963	enterobacteriales	IncX1	98.66	374 / 374	ABNNKS010000024.1 Salmonella enterica strain PNUSAS388971 SAMN37703718-rid19647283.denovo.24, whole genome shotgun sequence	6956..7329																																																avrA	ABNNKS010000002.1	587288..588157	99.885	870	0						
GCA_032494465.1_PDT001921877.1_genomic.fna	Salmonella_enterica	0.5212	720.971 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNKV010000001.1 Salmonella enterica strain PNUSAS388969 SAMN37703725-rid19647273.denovo.01, whole genome shotgun sequence	714492..714929	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNKV010000015.1 Salmonella enterica strain PNUSAS388969 SAMN37703725-rid19647273.guided.10, whole genome shotgun sequence	2070..2507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNKV010000003.1	160423..161292	99.54	870	0						
GCA_032494485.1_PDT001921878.1_genomic.fna	Salmonella_enterica	0.522	317.844 KB	5	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNKU010000002.1 Salmonella enterica strain PNUSAS388936 SAMN37703730-rid19648693.denovo.02, whole genome shotgun sequence	259282..259719	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNKU010000034.1 Salmonella enterica strain PNUSAS388936 SAMN37703730-rid19648693.guided.21, whole genome shotgun sequence	9265..9702	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNKU010000003.1	410908..411777	99.77	870	0						
GCA_032494505.1_PDT001921879.1_genomic.fna	Salmonella_enterica	0.5223	525.506 KB	4	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNNKT010000001.1 Salmonella enterica strain PNUSAS388919 SAMN37703731-rid19648703.denovo.01, whole genome shotgun sequence	699384..699821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNNKT010000028.1 Salmonella enterica strain PNUSAS388919 SAMN37703731-rid19648703.guided.21, whole genome shotgun sequence	9265..9702	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNNKT010000014.1 Salmonella enterica strain PNUSAS388919 SAMN37703731-rid19648703.denovo.14, whole genome shotgun sequence	34958..35491																																																						avrA	ABNNKT010000003.1	509055..509924	99.54	870	0						
GCA_032494525.1_PDT001921876.1_genomic.fna	Salmonella_enterica	0.522	465.965 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNKW010000001.1 Salmonella enterica strain PNUSAS389185 SAMN37703722-rid19648683.denovo.01, whole genome shotgun sequence	1370948..1371385	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNKW010000028.1 Salmonella enterica strain PNUSAS389185 SAMN37703722-rid19648683.guided.20, whole genome shotgun sequence	1049..1486	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNKW010000009.1	150693..151563	99.196	871	0						
GCA_032494545.1_PDT001921875.1_genomic.fna	Salmonella_enterica	0.5153	347.636 KB	6	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	44:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pXuzhou21	aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	44	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 44:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNNKX010000008.1 Salmonella enterica strain PNUSAS388967 SAMN37703723-rid19647263.denovo.08, whole genome shotgun sequence	4992..5429	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNNKX010000051.1 Salmonella enterica strain PNUSAS388967 SAMN37703723-rid19647263.guided.34, whole genome shotgun sequence	1603..2040	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pXuzhou21	91.92	718 / 720	ABNNKX010000021.1 Salmonella enterica strain PNUSAS388967 SAMN37703723-rid19647263.denovo.22, whole genome shotgun sequence	28750..29467																																																																	
GCA_032494565.1_PDT001921874.1_genomic.fna	Salmonella_enterica	0.5214	489.745 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNKY010000001.1 Salmonella enterica strain PNUSAS389132 SAMN37703317-rid19648673.denovo.01, whole genome shotgun sequence	108844..109281	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNKY010000027.1 Salmonella enterica strain PNUSAS389132 SAMN37703317-rid19648673.guided.21, whole genome shotgun sequence	1205..1642	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNKY010000015.1 Salmonella enterica strain PNUSAS389132 SAMN37703317-rid19648673.denovo.15, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABNNKY010000015.1 Salmonella enterica strain PNUSAS389132 SAMN37703317-rid19648673.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNNKY010000003.1	553684..554553	99.54	870	0						
GCA_032494585.1_PDT001921873.1_genomic.fna	Salmonella_enterica	0.5216	371.435 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNKZ010000002.1 Salmonella enterica strain PNUSAS389163 SAMN37703316-rid19648663.denovo.02, whole genome shotgun sequence	239429..239866	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNKZ010000043.1 Salmonella enterica strain PNUSAS389163 SAMN37703316-rid19648663.guided.35, whole genome shotgun sequence	1417..1854	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNKZ010000023.1 Salmonella enterica strain PNUSAS389163 SAMN37703316-rid19648663.denovo.23, whole genome shotgun sequence	37291..37933	enterobacteriales	IncFII(Yp)	99.57	230 / 230	ABNNKZ010000019.1 Salmonella enterica strain PNUSAS389163 SAMN37703316-rid19648663.denovo.19, whole genome shotgun sequence	48584..48813		enterobacteriales	IncFII(Yp)	93.07	231 / 230	ABNNKZ010000023.1 Salmonella enterica strain PNUSAS389163 SAMN37703316-rid19648663.denovo.23, whole genome shotgun sequence	10978..11204																																																				
GCA_032494605.1_PDT001921872.1_genomic.fna	Salmonella_enterica	0.5215	406.794 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNLA010000001.1 Salmonella enterica strain PNUSAS388893 SAMN37703313-rid19647253.denovo.01, whole genome shotgun sequence	521470..521907	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNLA010000023.1 Salmonella enterica strain PNUSAS388893 SAMN37703313-rid19647253.guided.18, whole genome shotgun sequence	12591..13028	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNLA010000014.1 Salmonella enterica strain PNUSAS388893 SAMN37703313-rid19647253.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNNLA010000014.1 Salmonella enterica strain PNUSAS388893 SAMN37703313-rid19647253.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNNLA010000002.1	553575..554444	99.54	870	0						
GCA_032494625.1_PDT001921870.1_genomic.fna	Salmonella_enterica	0.5218	682.666 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNLC010000001.1 Salmonella enterica strain PNUSAS389031 SAMN37703314-rid19647243.denovo.01, whole genome shotgun sequence	596407..596844	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNLC010000020.1 Salmonella enterica strain PNUSAS389031 SAMN37703314-rid19647243.guided.16, whole genome shotgun sequence	4157..4594	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNLC010000004.1	544607..545475	99.425	870	0						
GCA_032494645.1_PDT001921871.1_genomic.fna	Salmonella_enterica	0.5214	372.474 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNLB010000003.1 Salmonella enterica strain PNUSAS389129 SAMN37703312-rid19648653.denovo.03, whole genome shotgun sequence	260033..260470	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNLB010000032.1 Salmonella enterica strain PNUSAS389129 SAMN37703312-rid19648653.guided.21, whole genome shotgun sequence	2632..3069	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNLB010000013.1 Salmonella enterica strain PNUSAS389129 SAMN37703312-rid19648653.denovo.13, whole genome shotgun sequence	37311..37953	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNLB010000013.1 Salmonella enterica strain PNUSAS389129 SAMN37703312-rid19648653.denovo.13, whole genome shotgun sequence	10978..11204																																																											
GCA_032494665.1_PDT001920475.1_genomic.fna	Salmonella_enterica	0.5211	489.785 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNLG010000001.1 Salmonella enterica strain PNUSAS389318 SAMN37695129-rid19634523.denovo.01, whole genome shotgun sequence	815077..815514	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNLG010000021.1 Salmonella enterica strain PNUSAS389318 SAMN37695129-rid19634523.guided.14, whole genome shotgun sequence	20080..20517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNLG010000012.1 Salmonella enterica strain PNUSAS389318 SAMN37695129-rid19634523.denovo.13, whole genome shotgun sequence	48112..48754	enterobacteriales	IncFII(S)	100	262 / 262	ABNNLG010000012.1 Salmonella enterica strain PNUSAS389318 SAMN37695129-rid19634523.denovo.13, whole genome shotgun sequence	3859..4120																																																avrA	ABNNLG010000002.1	553176..554045	99.54	870	0						
GCA_032494685.1_PDT001921867.1_genomic.fna	Salmonella_enterica	0.5209	233.35 KB	7	aroC_13,dnaN_109,hemD_49,hisD_13,purE_220,sucA_13,thrA_4	754	30:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(pCRY),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_220	sucA	100	100	sucA_13	thrA	100	100	thrA_4	30	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Urbana		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNLF010000002.1 Salmonella enterica strain PNUSAS389057 SAMN37703310-rid19647233.denovo.002, whole genome shotgun sequence	337657..338094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNLF010000110.1 Salmonella enterica strain PNUSAS389057 SAMN37703310-rid19647233.guided.065, whole genome shotgun sequence	2673..3110	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNNLF010000032.1 Salmonella enterica strain PNUSAS389057 SAMN37703310-rid19647233.denovo.032, whole genome shotgun sequence	18102..18744	enterobacteriales	IncFII(pCRY)	94.27	593 / 593	ABNNLF010000035.1 Salmonella enterica strain PNUSAS389057 SAMN37703310-rid19647233.denovo.035, whole genome shotgun sequence	18519..19111		enterobacteriales	IncI1-I(Alpha)	98.6	143 / 142	ABNNLF010000025.1 Salmonella enterica strain PNUSAS389057 SAMN37703310-rid19647233.denovo.025, whole genome shotgun sequence	2597..2739																																									avrA	ABNNLF010000001.1	95708..96577	99.425	870	0						
GCA_032494705.1_PDT001920474.1_genomic.fna	Salmonella_enterica	0.5211	489.999 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNLH010000001.1 Salmonella enterica strain PNUSAS389341 SAMN37695132-rid19634513.denovo.01, whole genome shotgun sequence	815084..815521	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNLH010000022.1 Salmonella enterica strain PNUSAS389341 SAMN37695132-rid19634513.guided.13, whole genome shotgun sequence	26670..27107	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNLH010000011.1 Salmonella enterica strain PNUSAS389341 SAMN37695132-rid19634513.denovo.12, whole genome shotgun sequence	40614..41256	enterobacteriales	IncFII(S)	100	262 / 262	ABNNLH010000014.1 Salmonella enterica strain PNUSAS389341 SAMN37695132-rid19634513.denovo.17, whole genome shotgun sequence	3446..3707																																																avrA	ABNNLH010000002.1	553357..554226	99.54	870	0						
GCA_032494725.1_PDT001920471.1_genomic.fna	Salmonella_enterica	0.5212	728.55 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	10	aac(6')-Iaa,aadA2b,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncFII(p96A),IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNNLK010000001.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.denovo.01, whole genome shotgun sequence	687362..687799	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNNLK010000021.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.denovo.25, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aph(3')-Ia	99.14	816/816	ABNNLK010000029.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.denovo.36, whole genome shotgun sequence	452..1267	Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU855787	aac(6')-Iaa	99.54	438/438	ABNNLK010000035.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.guided.13, whole genome shotgun sequence	39955..40392	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.14	816/816	ABNNLK010000043.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.guided.39, whole genome shotgun sequence	155..970	Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU855787	aadA2b	99.87	780/780	ABNNLK010000044.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.guided.40, whole genome shotgun sequence	116..895	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNNLK010000021.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.denovo.25, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNNLK010000038.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.guided.30, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNNLK010000020.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.denovo.23, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNNLK010000037.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.guided.24, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNNLK010000019.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.denovo.22, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNNLK010000039.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.guided.32, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNNLK010000021.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.denovo.25, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNNLK010000038.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.guided.30, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNNLK010000021.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.denovo.25, whole genome shotgun sequence	5021..5860	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNLK010000042.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.guided.38, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNNLK010000019.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.denovo.22, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNNLK010000040.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.guided.34, whole genome shotgun sequence	793..2067	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNNLK010000019.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.denovo.22, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNNLK010000041.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.guided.37, whole genome shotgun sequence	369..842	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNNLK010000011.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.denovo.12, whole genome shotgun sequence	15755..16288	enterobacteriales	IncR	100	251 / 251	ABNNLK010000016.1 Salmonella enterica strain PNUSAS389339 SAMN37695133-rid19634483.denovo.19, whole genome shotgun sequence	4434..4684																																																avrA	ABNNLK010000003.1	553473..554342	99.77	870	0						
GCA_032494745.1_PDT001920473.1_genomic.fna	Salmonella_enterica	0.5217	519.901 KB	4	aroC_152,dnaN_14,hemD_344,hisD_551,purE_89,sucA_313,thrA_2	1891	13:i:1,5	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_152	dnaN	100	100	dnaN_14	hemD	100	100	hemD_344	hisD	100	100	hisD_551	purE	100	100	purE_89	sucA	100	100	sucA_313	thrA	100	100	thrA_2	13	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	Idikan		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNNLI010000001.1 Salmonella enterica strain PNUSAS389317 SAMN37695131-rid19634503.denovo.01, whole genome shotgun sequence	153358..153795	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNNLI010000041.1 Salmonella enterica strain PNUSAS389317 SAMN37695131-rid19634503.guided.27, whole genome shotgun sequence	3522..3959	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNNLI010000004.1 Salmonella enterica strain PNUSAS389317 SAMN37695131-rid19634503.denovo.04, whole genome shotgun sequence	182107..182529	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNNLI010000039.1 Salmonella enterica strain PNUSAS389317 SAMN37695131-rid19634503.guided.19, whole genome shotgun sequence	30070..30492	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNNLI010000026.1 Salmonella enterica strain PNUSAS389317 SAMN37695131-rid19634503.denovo.30, whole genome shotgun sequence	1708..1838																																																																	
GCA_032494765.1_PDT001920470.1_genomic.fna	Salmonella_enterica	0.522	705.941 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNNLL010000001.1 Salmonella enterica strain PNUSAS389321 SAMN37695128-rid19634473.denovo.01, whole genome shotgun sequence	473649..474086	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNNLL010000022.1 Salmonella enterica strain PNUSAS389321 SAMN37695128-rid19634473.guided.17, whole genome shotgun sequence	2180..2617	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNLL010000003.1	553743..554612	99.77	870	0						
GCA_032494785.1_PDT001920468.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNLN010000001.1 Salmonella enterica strain PNUSAS389322 SAMN37695127-rid19634453.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNLN010000023.1 Salmonella enterica strain PNUSAS389322 SAMN37695127-rid19634453.guided.17, whole genome shotgun sequence	4501..4938	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNLN010000012.1 Salmonella enterica strain PNUSAS389322 SAMN37695127-rid19634453.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNNLN010000012.1 Salmonella enterica strain PNUSAS389322 SAMN37695127-rid19634453.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNNLN010000002.1	553635..554504	99.54	870	0						
GCA_032494805.1_PDT001920469.1_genomic.fna	Salmonella_enterica	0.5189	391.749 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNLM010000001.1 Salmonella enterica strain PNUSAS389325 SAMN37695123-rid19634463.denovo.01, whole genome shotgun sequence	563827..564264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNLM010000029.1 Salmonella enterica strain PNUSAS389325 SAMN37695123-rid19634463.guided.13, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNLM010000011.1	140313..141181	99.195	870	0						
GCA_032494825.1_PDT001920464.1_genomic.fna	Salmonella_enterica	0.52	153.387 KB	11	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNNLR010000008.1 Salmonella enterica strain PNUSAS389324 SAMN37695126-rid19634413.denovo.08, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNNLR010000062.1 Salmonella enterica strain PNUSAS389324 SAMN37695126-rid19634413.guided.31, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032494845.1_PDT001920463.1_genomic.fna	Salmonella_enterica	0.5191	604.06 KB	3	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNLS010000001.1 Salmonella enterica strain PNUSAS389329 SAMN37695118-rid19634403.denovo.01, whole genome shotgun sequence	911343..911780	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNLS010000021.1 Salmonella enterica strain PNUSAS389329 SAMN37695118-rid19634403.guided.09, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNNLS010000014.1 Salmonella enterica strain PNUSAS389329 SAMN37695118-rid19634403.denovo.17, whole genome shotgun sequence	1905..2035																																																						avrA	ABNNLS010000003.1	162699..163568	98.966	870	0						
GCA_032494865.1_PDT001921869.1_genomic.fna	Salmonella_enterica	0.5202	665.573 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNLD010000001.1 Salmonella enterica strain PNUSAS389127 SAMN37703311-rid19648643.denovo.01, whole genome shotgun sequence	108793..109230	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNLD010000028.1 Salmonella enterica strain PNUSAS389127 SAMN37703311-rid19648643.guided.22, whole genome shotgun sequence	3036..3473	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNLD010000014.1 Salmonella enterica strain PNUSAS389127 SAMN37703311-rid19648643.denovo.14, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNNLD010000014.1 Salmonella enterica strain PNUSAS389127 SAMN37703311-rid19648643.denovo.14, whole genome shotgun sequence	4416..4677		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNNLD010000012.1 Salmonella enterica strain PNUSAS389127 SAMN37703311-rid19648643.denovo.12, whole genome shotgun sequence	82711..82852		enterobacteriales	IncX1	98.93	374 / 374	ABNNLD010000015.1 Salmonella enterica strain PNUSAS389127 SAMN37703311-rid19648643.denovo.15, whole genome shotgun sequence	32011..32384																																		avrA	ABNNLD010000002.1	553690..554559	99.54	870	0						
GCA_032494885.1_PDT001921868.1_genomic.fna	Salmonella_enterica	0.5216	605.899 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNLE010000001.1 Salmonella enterica strain PNUSAS389131 SAMN37703315-rid19648633.denovo.01, whole genome shotgun sequence	768802..769239	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNLE010000017.1 Salmonella enterica strain PNUSAS389131 SAMN37703315-rid19648633.guided.14, whole genome shotgun sequence	20..457	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNLE010000002.1	509490..510358	99.425	870	0						
GCA_032494905.1_PDT001920472.1_genomic.fna	Salmonella_enterica	0.5208	489.862 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNLJ010000001.1 Salmonella enterica strain PNUSAS389320 SAMN37695130-rid19634493.denovo.01, whole genome shotgun sequence	815072..815509	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNLJ010000022.1 Salmonella enterica strain PNUSAS389320 SAMN37695130-rid19634493.guided.12, whole genome shotgun sequence	16209..16646	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNLJ010000011.1 Salmonella enterica strain PNUSAS389320 SAMN37695130-rid19634493.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNNLJ010000014.1 Salmonella enterica strain PNUSAS389320 SAMN37695130-rid19634493.denovo.17, whole genome shotgun sequence	3272..3533																																																avrA	ABNNLJ010000002.1	553181..554050	99.54	870	0						
GCA_032494925.1_PDT001920467.1_genomic.fna	Salmonella_enterica	0.514	595.38 KB	2	aroC_56,dnaN_25,hemD_28,hisD_83,purE_641,sucA_26,thrA_78	3565	63:z4,z23:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_56	dnaN	100	100	dnaN_25	hemD	100	100	hemD_28	hisD	100	100	hisD_83	purE	100	100	purE_641	sucA	100	100	sucA_26	thrA	100	100	thrA_78	63	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 63:z4,z23:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032494945.1_PDT001920466.1_genomic.fna	Salmonella_enterica	0.5202	204.124 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNNLP010000010.1 Salmonella enterica strain PNUSAS389333 SAMN37695114-rid19634433.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNNLP010000057.1 Salmonella enterica strain PNUSAS389333 SAMN37695114-rid19634433.guided.40, whole genome shotgun sequence	5955..6389	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032494965.1_PDT001920465.1_genomic.fna	Salmonella_enterica	0.5215	282.825 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNLQ010000001.1 Salmonella enterica strain PNUSAS389323 SAMN37695120-rid19634423.denovo.01, whole genome shotgun sequence	581408..581845	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNLQ010000037.1 Salmonella enterica strain PNUSAS389323 SAMN37695120-rid19634423.denovo.40, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNLQ010000037.1 Salmonella enterica strain PNUSAS389323 SAMN37695120-rid19634423.denovo.40, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNNLQ010000050.1 Salmonella enterica strain PNUSAS389323 SAMN37695120-rid19634423.guided.39, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNLQ010000050.1 Salmonella enterica strain PNUSAS389323 SAMN37695120-rid19634423.guided.39, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNNLQ010000052.1 Salmonella enterica strain PNUSAS389323 SAMN37695120-rid19634423.guided.44, whole genome shotgun sequence	2332..2769	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNNLQ010000040.1 Salmonella enterica strain PNUSAS389323 SAMN37695120-rid19634423.denovo.45, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNNLQ010000053.1 Salmonella enterica strain PNUSAS389323 SAMN37695120-rid19634423.guided.46, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNNLQ010000037.1 Salmonella enterica strain PNUSAS389323 SAMN37695120-rid19634423.denovo.40, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNLQ010000050.1 Salmonella enterica strain PNUSAS389323 SAMN37695120-rid19634423.guided.39, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNNLQ010000029.1 Salmonella enterica strain PNUSAS389323 SAMN37695120-rid19634423.denovo.31, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNLQ010000051.1 Salmonella enterica strain PNUSAS389323 SAMN37695120-rid19634423.guided.42, whole genome shotgun sequence	1492..2697	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNNLQ010000002.1	589451..590320	99.885	870	0						
GCA_032494985.1_PDT001920461.1_genomic.fna	Salmonella_enterica	0.5213	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNLU010000001.1 Salmonella enterica strain PNUSAS389340 SAMN37695108-rid19634383.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNLU010000031.1 Salmonella enterica strain PNUSAS389340 SAMN37695108-rid19634383.guided.17, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNLU010000002.1	363672..364541	99.655	870	0						
GCA_032495005.1_PDT001920462.1_genomic.fna	Salmonella_enterica	0.5208	527.884 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNLT010000003.1 Salmonella enterica strain PNUSAS389331 SAMN37695116-rid19634393.denovo.03, whole genome shotgun sequence	514200..514637	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNLT010000041.1 Salmonella enterica strain PNUSAS389331 SAMN37695116-rid19634393.guided.33, whole genome shotgun sequence	742..1179	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNLT010000002.1	592641..593510	99.425	870	0						
GCA_032495025.1_PDT001920460.1_genomic.fna	Salmonella_enterica	0.5206	302.375 KB	5	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	6	aac(6')-Iaa,aadA1,aac(6')-Iaa,aadA1,blaTEM-1A,blaTEM-1A,qnrB19,qnrB19,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNNLV010000001.1 Salmonella enterica strain PNUSAS389342 SAMN37695119-rid19634373.denovo.01, whole genome shotgun sequence	52043..52480	Amikacin, Tobramycin	NC_003197	aadA1	100	789/789	ABNNLV010000029.1 Salmonella enterica strain PNUSAS389342 SAMN37695119-rid19634373.denovo.33, whole genome shotgun sequence	9225..10013	Spectinomycin, Streptomycin	JQ480156	aac(6')-Iaa	97.03	438/438	ABNNLV010000045.1 Salmonella enterica strain PNUSAS389342 SAMN37695119-rid19634373.guided.29, whole genome shotgun sequence	13207..13644	Amikacin, Tobramycin	NC_003197	aadA1	100	789/789	ABNNLV010000047.1 Salmonella enterica strain PNUSAS389342 SAMN37695119-rid19634373.guided.32, whole genome shotgun sequence	113..901	Spectinomycin, Streptomycin	JQ480156	blaTEM-1A	100	861/861	ABNNLV010000029.1 Salmonella enterica strain PNUSAS389342 SAMN37695119-rid19634373.denovo.33, whole genome shotgun sequence	2673..3533	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNNLV010000047.1 Salmonella enterica strain PNUSAS389342 SAMN37695119-rid19634373.guided.32, whole genome shotgun sequence	6593..7453	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	qnrB19	100	645/645	ABNNLV010000034.1 Salmonella enterica strain PNUSAS389342 SAMN37695119-rid19634373.denovo.39, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNNLV010000048.1 Salmonella enterica strain PNUSAS389342 SAMN37695119-rid19634373.guided.38, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	tet(A)	100	1200/1200	ABNNLV010000020.1 Salmonella enterica strain PNUSAS389342 SAMN37695119-rid19634373.denovo.20, whole genome shotgun sequence	45248..46447	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNLV010000050.1 Salmonella enterica strain PNUSAS389342 SAMN37695119-rid19634373.guided.41, whole genome shotgun sequence	1210..2409	Doxycycline, Tetracycline	AJ517790	dfrA1	100	474/474	ABNNLV010000032.1 Salmonella enterica strain PNUSAS389342 SAMN37695119-rid19634373.denovo.36, whole genome shotgun sequence	610..1083	Trimethoprim	X00926	dfrA1	100	474/474	ABNNLV010000049.1 Salmonella enterica strain PNUSAS389342 SAMN37695119-rid19634373.guided.40, whole genome shotgun sequence	1834..2307	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNNLV010000034.1 Salmonella enterica strain PNUSAS389342 SAMN37695119-rid19634373.denovo.39, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNNLV010000048.1 Salmonella enterica strain PNUSAS389342 SAMN37695119-rid19634373.guided.38, whole genome shotgun sequence	2416..2546		enterobacteriales	IncFIB(AP001918)	98.83	682 / 682	ABNNLV010000020.1 Salmonella enterica strain PNUSAS389342 SAMN37695119-rid19634373.denovo.20, whole genome shotgun sequence	37408..38089		enterobacteriales	IncFIC(FII)	94.19	499 / 499	ABNNLV010000020.1 Salmonella enterica strain PNUSAS389342 SAMN37695119-rid19634373.denovo.20, whole genome shotgun sequence	6031..6527																																		avrA	ABNNLV010000008.1	82109..82978	99.195	870	0						
GCA_032495045.1_PDT001920459.1_genomic.fna	Salmonella_enterica	0.5212	303.638 KB	7	aroC_43,dnaN_41,hemD_16,hisD_85,purE_40,sucA_58,thrA_3	1392	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_3	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNLW010000006.1 Salmonella enterica strain PNUSAS389326 SAMN37695122-rid19634363.denovo.06, whole genome shotgun sequence	179144..179581	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNLW010000055.1 Salmonella enterica strain PNUSAS389326 SAMN37695122-rid19634363.guided.45, whole genome shotgun sequence	1557..1994	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNLW010000001.1	167518..168387	99.54	870	0						
GCA_032495065.1_PDT001920458.1_genomic.fna	Salmonella_enterica	0.5225	402.047 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNNLX010000001.1 Salmonella enterica strain PNUSAS389338 SAMN37695109-rid19634353.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNNLX010000034.1 Salmonella enterica strain PNUSAS389338 SAMN37695109-rid19634353.guided.21, whole genome shotgun sequence	2832..3269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNNLX010000021.1 Salmonella enterica strain PNUSAS389338 SAMN37695109-rid19634353.denovo.24, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNNLX010000023.1 Salmonella enterica strain PNUSAS389338 SAMN37695109-rid19634353.denovo.26, whole genome shotgun sequence	2528..2639																																																avrA	ABNNLX010000008.1	174277..175145	99.425	870	0						
GCA_032495085.1_PDT001920457.1_genomic.fna	Salmonella_enterica	0.5214	494.588 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNNLY010000001.1 Salmonella enterica strain PNUSAS389330 SAMN37695117-rid19634343.denovo.01, whole genome shotgun sequence	817569..818006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNNLY010000025.1 Salmonella enterica strain PNUSAS389330 SAMN37695117-rid19634343.guided.20, whole genome shotgun sequence	7745..8182	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNNLY010000017.1 Salmonella enterica strain PNUSAS389330 SAMN37695117-rid19634343.denovo.21, whole genome shotgun sequence	239..369																																																						avrA	ABNNLY010000008.1	140114..140983	99.425	870	0						
GCA_032495105.1_PDT001920456.1_genomic.fna	Salmonella_enterica	0.5216	291.858 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNLZ010000001.1 Salmonella enterica strain PNUSAS389327 SAMN37695125-rid19634333.denovo.01, whole genome shotgun sequence	379341..379778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNLZ010000031.1 Salmonella enterica strain PNUSAS389327 SAMN37695125-rid19634333.guided.20, whole genome shotgun sequence	21677..22114	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNNLZ010000024.1 Salmonella enterica strain PNUSAS389327 SAMN37695125-rid19634333.denovo.27, whole genome shotgun sequence	371..501																																																						avrA	ABNNLZ010000002.1	507561..508430	99.885	870	0						
GCA_032495125.1_PDT001920455.1_genomic.fna	Salmonella_enterica	0.5225	526.237 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNMA010000001.1 Salmonella enterica strain PNUSAS389328 SAMN37695121-rid19634323.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNMA010000032.1 Salmonella enterica strain PNUSAS389328 SAMN37695121-rid19634323.guided.21, whole genome shotgun sequence	15633..16070	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNMA010000003.1	149828..150697	99.655	870	0						
GCA_032495145.1_PDT001920453.1_genomic.fna	Salmonella_enterica	0.5214	301.234 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNMB010000001.1 Salmonella enterica strain PNUSAS389319 SAMN37695124-rid19634303.denovo.01, whole genome shotgun sequence	337843..338280	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNMB010000031.1 Salmonella enterica strain PNUSAS389319 SAMN37695124-rid19634303.denovo.35, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMB010000031.1 Salmonella enterica strain PNUSAS389319 SAMN37695124-rid19634303.denovo.35, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNNMB010000047.1 Salmonella enterica strain PNUSAS389319 SAMN37695124-rid19634303.guided.34, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMB010000047.1 Salmonella enterica strain PNUSAS389319 SAMN37695124-rid19634303.guided.34, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNNMB010000036.1 Salmonella enterica strain PNUSAS389319 SAMN37695124-rid19634303.denovo.41, whole genome shotgun sequence	369..1229	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNNMB010000048.1 Salmonella enterica strain PNUSAS389319 SAMN37695124-rid19634303.guided.40, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNNMB010000031.1 Salmonella enterica strain PNUSAS389319 SAMN37695124-rid19634303.denovo.35, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNMB010000047.1 Salmonella enterica strain PNUSAS389319 SAMN37695124-rid19634303.guided.34, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNNMB010000025.1 Salmonella enterica strain PNUSAS389319 SAMN37695124-rid19634303.denovo.26, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNMB010000046.1 Salmonella enterica strain PNUSAS389319 SAMN37695124-rid19634303.guided.28, whole genome shotgun sequence	7712..8917	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNNMB010000032.1 Salmonella enterica strain PNUSAS389319 SAMN37695124-rid19634303.denovo.36, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNNMB010000033.1 Salmonella enterica strain PNUSAS389319 SAMN37695124-rid19634303.denovo.37, whole genome shotgun sequence	1469..1599		enterobacteriales	Col440I	94.74	114 / 114	ABNNMB010000034.1 Salmonella enterica strain PNUSAS389319 SAMN37695124-rid19634303.denovo.38, whole genome shotgun sequence	1981..2094																																									avrA	ABNNMB010000002.1	508772..509641	99.885	870	0						
GCA_032495165.1_PDT001920454.1_genomic.fna	Salmonella_enterica	0.5216	498.421 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNMD010000001.1 Salmonella enterica strain PNUSAS389335 SAMN37695113-rid19634313.denovo.01, whole genome shotgun sequence	563829..564266	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNMD010000029.1 Salmonella enterica strain PNUSAS389335 SAMN37695113-rid19634313.guided.20, whole genome shotgun sequence	4414..4851	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNMD010000012.1	140231..141099	99.195	870	0						
GCA_032495185.1_PDT001920452.1_genomic.fna	Salmonella_enterica	0.5211	490.397 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNMC010000001.1 Salmonella enterica strain PNUSAS389337 SAMN37695110-rid19634293.denovo.01, whole genome shotgun sequence	774540..774977	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNMC010000020.1 Salmonella enterica strain PNUSAS389337 SAMN37695110-rid19634293.guided.12, whole genome shotgun sequence	5960..6397	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNMC010000002.1	553547..554416	99.54	870	0						
GCA_032495205.1_PDT001920451.1_genomic.fna	Salmonella_enterica	0.5201	496.719 KB	3	aroC_104,dnaN_100,hemD_54,hisD_78,purE_104,sucA_9,thrA_48	292	8:z4,z24:-	6	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,floR,floR,sul2,sul2,tet(A),tet(A)	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_104	dnaN	100	100	dnaN_100	hemD	100	100	hemD_54	hisD	100	100	hisD_78	purE	100	100	purE_104	sucA	100	100	sucA_9	thrA	100	100	thrA_48	8	z4,z24	-	Salmonella enterica subspecies enterica (subspecies I)	Albany or Duesseldorf	The predicted serotypes share the same general formula: 8:z4,z24:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNME010000001.1 Salmonella enterica strain PNUSAS389336 SAMN37695111-rid19634283.denovo.01, whole genome shotgun sequence	784284..784721	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	99.88	804/804	ABNNME010000018.1 Salmonella enterica strain PNUSAS389336 SAMN37695111-rid19634283.denovo.24, whole genome shotgun sequence	2..805	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNNME010000018.1 Salmonella enterica strain PNUSAS389336 SAMN37695111-rid19634283.denovo.24, whole genome shotgun sequence	2..805	Streptomycin	AF313472	aac(6')-Iaa	98.63	438/438	ABNNME010000030.1 Salmonella enterica strain PNUSAS389336 SAMN37695111-rid19634283.guided.15, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	837/837	ABNNME010000033.1 Salmonella enterica strain PNUSAS389336 SAMN37695111-rid19634283.guided.21, whole genome shotgun sequence	2049..2885	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNNME010000033.1 Salmonella enterica strain PNUSAS389336 SAMN37695111-rid19634283.guided.21, whole genome shotgun sequence	1246..2049	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNNME010000033.1 Salmonella enterica strain PNUSAS389336 SAMN37695111-rid19634283.guided.21, whole genome shotgun sequence	1246..2049	Streptomycin	AF313472	floR	98.11	1214/1215	ABNNME010000017.1 Salmonella enterica strain PNUSAS389336 SAMN37695111-rid19634283.denovo.23, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNME010000034.1 Salmonella enterica strain PNUSAS389336 SAMN37695111-rid19634283.guided.22, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNNME010000018.1 Salmonella enterica strain PNUSAS389336 SAMN37695111-rid19634283.denovo.24, whole genome shotgun sequence	866..1681	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNNME010000033.1 Salmonella enterica strain PNUSAS389336 SAMN37695111-rid19634283.guided.21, whole genome shotgun sequence	370..1185	Sulfamethoxazole	AY034138	tet(A)	99.83	1200/1200	ABNNME010000016.1 Salmonella enterica strain PNUSAS389336 SAMN37695111-rid19634283.denovo.19, whole genome shotgun sequence	990..2189	Doxycycline, Tetracycline	AY196695	tet(A)	99.83	1200/1200	ABNNME010000032.1 Salmonella enterica strain PNUSAS389336 SAMN37695111-rid19634283.guided.20, whole genome shotgun sequence	1308..2507	Doxycycline, Tetracycline	AY196695																																																																																																																																																																																																																																																																																																																																																																													gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																						avrA	ABNNME010000007.1	187318..188187	99.08	870	0						
GCA_032495225.1_PDT001920450.1_genomic.fna	Salmonella_enterica	0.5211	489.747 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNMG010000001.1 Salmonella enterica strain PNUSAS389334 SAMN37695112-rid19634273.denovo.01, whole genome shotgun sequence	813391..813828	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNMG010000020.1 Salmonella enterica strain PNUSAS389334 SAMN37695112-rid19634273.guided.15, whole genome shotgun sequence	12957..13394	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNMG010000011.1 Salmonella enterica strain PNUSAS389334 SAMN37695112-rid19634273.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNNMG010000014.1 Salmonella enterica strain PNUSAS389334 SAMN37695112-rid19634273.denovo.17, whole genome shotgun sequence	3395..3656																																																avrA	ABNNMG010000002.1	584270..585139	99.54	870	0						
GCA_032495245.1_PDT001920197.1_genomic.fna	Salmonella_enterica	0.5214	292.632 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNMH010000012.1 Salmonella enterica strain PNUSAS389299 SAMN37694939-rid19634253.denovo.12, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNMH010000042.1 Salmonella enterica strain PNUSAS389299 SAMN37694939-rid19634253.guided.34, whole genome shotgun sequence	6155..6592	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNNMH010000019.1 Salmonella enterica strain PNUSAS389299 SAMN37694939-rid19634253.denovo.19, whole genome shotgun sequence	34957..35490																																																						avrA	ABNNMH010000003.1	39344..40210	98.966	870	0						
GCA_032495285.1_PDT001920196.1_genomic.fna	Salmonella_enterica	0.5211	422.087 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNMI010000001.1 Salmonella enterica strain PNUSAS389300 SAMN37694942-rid19634243.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNMI010000032.1 Salmonella enterica strain PNUSAS389300 SAMN37694942-rid19634243.guided.24, whole genome shotgun sequence	6013..6450	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	98.45	193 / 193	ABNNMI010000025.1 Salmonella enterica strain PNUSAS389300 SAMN37694942-rid19634243.denovo.28, whole genome shotgun sequence	529..721	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNMI010000019.1 Salmonella enterica strain PNUSAS389300 SAMN37694942-rid19634243.denovo.19, whole genome shotgun sequence	47948..48590		enterobacteriales	IncFII(S)	100	262 / 262	ABNNMI010000019.1 Salmonella enterica strain PNUSAS389300 SAMN37694942-rid19634243.denovo.19, whole genome shotgun sequence	3704..3965																																									avrA	ABNNMI010000012.1	39485..40354	99.54	870	0						
GCA_032495305.1_PDT001920195.1_genomic.fna	Salmonella_enterica	0.5209	367.106 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNMJ010000001.1 Salmonella enterica strain PNUSAS389298 SAMN37694940-rid19634233.denovo.01, whole genome shotgun sequence	477397..477834	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNMJ010000037.1 Salmonella enterica strain PNUSAS389298 SAMN37694940-rid19634233.guided.23, whole genome shotgun sequence	13125..13562	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNMJ010000010.1	150651..151521	99.196	871	0						
GCA_032495365.1_PDT001920193.1_genomic.fna	Salmonella_enterica	0.5187	225.467 KB	8	aroC_43,dnaN_47,hemD_49,hisD_16,purE_41,sucA_15,thrA_3	241	4:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Bredeney		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNMK010000006.1 Salmonella enterica strain PNUSAS389297 SAMN37694941-rid19634213.denovo.06, whole genome shotgun sequence	82628..83065	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNMK010000046.1 Salmonella enterica strain PNUSAS389297 SAMN37694941-rid19634213.guided.31, whole genome shotgun sequence	3657..4094	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	97.41	193 / 193	ABNNMK010000036.1 Salmonella enterica strain PNUSAS389297 SAMN37694941-rid19634213.denovo.39, whole genome shotgun sequence	278..470																																																						avrA	ABNNMK010000003.1	39348..40216	98.851	870	0						
GCA_032495405.1_PDT001920155.1_genomic.fna	Salmonella_enterica	0.5182	60.018 KB	27	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aph(3')-Ia,aadA22,aadA22,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaTEM-1B,blaLAP-2,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul2,sul2,sul2,sul3,tet(A),tet(B),tet(B),tet(A),dfrA14,dfrA14	0		5	Col(pHAD28),IncHI2,IncHI2A,IncI2(Delta),IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNMO010000016.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.016, whole genome shotgun sequence	12505..12942	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNMO010000129.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.130, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABNNMO010000136.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.139, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMO010000136.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.139, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMO010000141.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.150, whole genome shotgun sequence	261..1121	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNMO010000151.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.163, whole genome shotgun sequence	591..1382	Spectinomycin, Streptomycin	AM261837	aph(6)-Id	100	837/837	ABNNMO010000198.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.135, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMO010000198.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.135, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNNMO010000199.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.136, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMO010000199.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.136, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMO010000206.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.151, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNNMO010000208.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.158, whole genome shotgun sequence	762..1577	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aadA22	100	792/792	ABNNMO010000215.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.189, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	aadA22	99.87	792/792	ABNNMO010000216.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.190, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNMO010000115.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.116, whole genome shotgun sequence	3229..4104	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	819/858	ABNNMO010000156.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.169, whole genome shotgun sequence	1..819	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNMO010000164.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.179, whole genome shotgun sequence	146..1006	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNMO010000201.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.143, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNMO010000211.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.178, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	784/858	ABNNMO010000214.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.188, whole genome shotgun sequence	1..784	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	mph(A)	100	906/906	ABNNMO010000143.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.153, whole genome shotgun sequence	2576..3481	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMO010000151.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.163, whole genome shotgun sequence	1514..2335	Lincomycin	EU118119	mph(A)	100	906/906	ABNNMO010000212.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.184, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMO010000213.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.186, whole genome shotgun sequence	116..937	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNMO010000135.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.138, whole genome shotgun sequence	954..2167	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNMO010000204.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.148, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNMO010000138.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.142, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNMO010000207.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.156, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNMO010000158.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.171, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNMO010000210.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.174, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNNMO010000112.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.113, whole genome shotgun sequence	7018..7809	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNMO010000136.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.139, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	99.88	816/816	ABNNMO010000198.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.135, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNMO010000199.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.136, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNMO010000209.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.167, whole genome shotgun sequence	1106..1897	Sulfamethoxazole	AJ459418	tet(A)	100	1200/1200	ABNNMO010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.090, whole genome shotgun sequence	1053..2252	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNNMO010000107.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.108, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNMO010000203.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.145, whole genome shotgun sequence	2383..3588	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNMO010000205.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.149, whole genome shotgun sequence	911..2110	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNMO010000158.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.171, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNMO010000210.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.guided.174, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																													enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNMO010000124.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.125, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNMO010000094.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.095, whole genome shotgun sequence	657..983		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNMO010000100.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.101, whole genome shotgun sequence	1535..2164		enterobacteriales	IncI2(Delta)	100	316 / 316	ABNNMO010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.051, whole genome shotgun sequence	30022..30337		enterobacteriales	IncN	100	514 / 514	ABNNMO010000170.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017511 SAMN37691013-rid19634173.denovo.187, whole genome shotgun sequence	470..983																											avrA	ABNNMO010000002.1	61078..61947	99.885	870	0						
GCA_032495425.1_PDT001920154.1_genomic.fna	Salmonella_enterica	0.5193	55.401 KB	32	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	18	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aph(3')-Ia,aadA22,blaCTX-M-55,blaTEM-1B,blaLAP-2,blaCTX-M-55,blaLAP-2,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul3,sul2,sul3,tet(B),tet(B),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNMP010000028.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.028, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNMP010000135.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.136, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABNNMP010000141.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.143, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMP010000141.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.143, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMP010000146.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.153, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNMP010000173.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.187, whole genome shotgun sequence	21..812	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNMP010000208.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.032, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNMP010000209.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.142, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMP010000209.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.142, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMP010000215.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.155, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNNMP010000220.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.169, whole genome shotgun sequence	762..1577	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EU722351	aadA22	100	792/792	ABNNMP010000221.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.184, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNMP010000137.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.138, whole genome shotgun sequence	4171..5046	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNMP010000178.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.194, whole genome shotgun sequence	146..1006	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	847/858	ABNNMP010000187.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.203, whole genome shotgun sequence	1..847	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaCTX-M-55	100	876/876	ABNNMP010000211.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.147, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNMP010000217.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.162, whole genome shotgun sequence	2096..2953	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNMP010000223.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.193, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNNMP010000148.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.157, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMP010000173.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.187, whole genome shotgun sequence	944..1765	Lincomycin	EU118119	mph(A)	100	906/906	ABNNMP010000216.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.156, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMP010000221.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.184, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNMP010000142.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.145, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNMP010000219.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.164, whole genome shotgun sequence	1469..2682	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNMP010000143.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.146, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNMP010000210.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.144, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNMP010000175.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.190, whole genome shotgun sequence	600..1052	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNMP010000222.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.189, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul2	100	816/816	ABNNMP010000141.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.143, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNMP010000147.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.154, whole genome shotgun sequence	914..1705	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNMP010000209.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.142, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNMP010000218.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.163, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNMP010000145.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.151, whole genome shotgun sequence	2217..3422	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNMP010000213.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.150, whole genome shotgun sequence	2310..3515	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNNMP010000175.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.190, whole genome shotgun sequence	16..489	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNMP010000222.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.guided.189, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNMP010000125.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.126, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNMP010000099.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.100, whole genome shotgun sequence	663..989		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNMP010000103.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.104, whole genome shotgun sequence	2771..3400		enterobacteriales	IncN	100	512 / 514	ABNNMP010000189.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017510 SAMN37691002-rid19634163.denovo.205, whole genome shotgun sequence	470..981																																		avrA	ABNNMP010000027.1	61077..61946	99.885	870	0						
GCA_032495445.1_PDT001920153.1_genomic.fna	Salmonella_enterica	0.5188	191.81 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aadA22,aac(3)-IId,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaLAP-2,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul2,sul2,sul3,tet(B),tet(A),tet(B),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNMQ010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.01, whole genome shotgun sequence	154564..155001	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNMQ010000048.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.52, whole genome shotgun sequence	555..1370	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABNNMQ010000050.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.55, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMQ010000050.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.55, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMQ010000053.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.58, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNMQ010000057.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.63, whole genome shotgun sequence	945..1736	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNMQ010000069.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.42, whole genome shotgun sequence	3577..4014	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNMQ010000073.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.54, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMQ010000073.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.54, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNNMQ010000074.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.62, whole genome shotgun sequence	762..1577	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	EU722351	aadA22	100	792/792	ABNNMQ010000080.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.71, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	aac(3)-IId	99.88	861/861	ABNNMQ010000084.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.77, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	blaCTX-M-55	100	876/876	ABNNMQ010000043.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.45, whole genome shotgun sequence	2300..3175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNMQ010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.61, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNMQ010000060.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.72, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNMQ010000076.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.66, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNMQ010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.74, whole genome shotgun sequence	543..1400	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNMQ010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.75, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNNMQ010000055.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.60, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMQ010000057.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.63, whole genome shotgun sequence	1868..2689	Lincomycin	EU118119	mph(A)	100	906/906	ABNNMQ010000077.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.67, whole genome shotgun sequence	43..948	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMQ010000080.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.71, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNMQ010000042.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.44, whole genome shotgun sequence	868..2081	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNMQ010000075.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.65, whole genome shotgun sequence	1055..2268	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNMQ010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.53, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNMQ010000079.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.70, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNMQ010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.69, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNMQ010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.73, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNNMQ010000041.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.41, whole genome shotgun sequence	12282..13073	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNMQ010000050.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.55, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNMQ010000073.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.54, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNMQ010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.80, whole genome shotgun sequence	18..809	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNMQ010000039.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.39, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNMQ010000052.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.57, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNNMQ010000071.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.50, whole genome shotgun sequence	3697..4902	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNMQ010000078.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.68, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNMQ010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.69, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNMQ010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.guided.73, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNMQ010000044.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.46, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNMQ010000024.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.24, whole genome shotgun sequence	57382..57708		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNMQ010000014.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.14, whole genome shotgun sequence	11024..11653		enterobacteriales	IncN	100	513 / 514	ABNNMQ010000062.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017515 SAMN37691018-rid19634153.denovo.78, whole genome shotgun sequence	470..982																																		avrA	ABNNMQ010000009.1	93863..94732	99.885	870	0						
GCA_032495465.1_PDT001920152.1_genomic.fna	Salmonella_enterica	0.5187	256.579 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aac(3)-IId,aadA22,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaLAP-2,blaTEM-1B,blaCTX-M-55,mph(A),lnu(F),mph(A),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul2,sul2,sul3,tet(B),tet(A),tet(B),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNMR010000002.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.02, whole genome shotgun sequence	175487..175924	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNMR010000046.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.48, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABNNMR010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.52, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMR010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.52, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMR010000054.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.59, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNMR010000058.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.69, whole genome shotgun sequence	238..1029	Spectinomycin, Streptomycin	AM261837	aph(6)-Id	100	837/837	ABNNMR010000074.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.51, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMR010000074.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.51, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNNMR010000080.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.65, whole genome shotgun sequence	762..1577	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	EU722351	aac(6')-Iaa	100	438/438	ABNNMR010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.68, whole genome shotgun sequence	778..1215	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNNMR010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.70, whole genome shotgun sequence	12..872	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNMR010000090.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.81, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNMR010000041.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.42, whole genome shotgun sequence	2300..3175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNMR010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.62, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNMR010000060.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.72, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNNMR010000077.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.61, whole genome shotgun sequence	2096..2953	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNMR010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.76, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNMR010000088.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.77, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	mph(A)	100	906/906	ABNNMR010000055.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.60, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMR010000058.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.69, whole genome shotgun sequence	1161..1982	Lincomycin	EU118119	mph(A)	100	906/906	ABNNMR010000084.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.73, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNNMR010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.74, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMR010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.79, whole genome shotgun sequence	65..886	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNMR010000040.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.41, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNMR010000078.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.63, whole genome shotgun sequence	1550..2763	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNMR010000050.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.54, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNMR010000075.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.53, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNMR010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.71, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNMR010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.75, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNNMR010000035.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.35, whole genome shotgun sequence	12281..13072	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNMR010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.52, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNMR010000074.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.51, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNMR010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.66, whole genome shotgun sequence	1661..2452	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNMR010000034.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.34, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNMR010000053.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.57, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNNMR010000072.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.40, whole genome shotgun sequence	5245..6450	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNMR010000079.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.64, whole genome shotgun sequence	97..1296	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNMR010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.71, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNMR010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.guided.75, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																											enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNMR010000042.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.43, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNMR010000019.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.19, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNMR010000031.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.31, whole genome shotgun sequence	11024..11653		enterobacteriales	IncN	100	513 / 514	ABNNMR010000062.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017530 SAMN37691019-rid19634143.denovo.80, whole genome shotgun sequence	470..982																																		avrA	ABNNMR010000001.1	540747..541616	99.885	870	0						
GCA_032495485.1_PDT001920149.1_genomic.fna	Salmonella_enterica	0.5188	271.558 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aph(3')-Ia,aadA22,blaCTX-M-55,blaTEM-1B,blaLAP-2,blaCTX-M-55,blaLAP-2,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul2,sul2,sul3,tet(B),tet(A),tet(B),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNMT010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.01, whole genome shotgun sequence	591891..592328	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNMT010000042.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.45, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(6)-Id	100	837/837	ABNNMT010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.49, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMT010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.49, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMT010000050.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.59, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNMT010000053.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.67, whole genome shotgun sequence	945..1736	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNMT010000072.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.37, whole genome shotgun sequence	3784..4221	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNMT010000073.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.48, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMT010000073.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.48, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMT010000079.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.60, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNNMT010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.66, whole genome shotgun sequence	762..1577	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aadA22	100	792/792	ABNNMT010000084.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.71, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNMT010000038.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.41, whole genome shotgun sequence	2300..3175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNMT010000044.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.47, whole genome shotgun sequence	501..1361	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNNMT010000044.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.47, whole genome shotgun sequence	3565..4422	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaCTX-M-55	100	876/876	ABNNMT010000075.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.52, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNMT010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.63, whole genome shotgun sequence	2096..2953	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNMT010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.73, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNNMT010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.62, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMT010000053.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.67, whole genome shotgun sequence	1868..2689	Lincomycin	EU118119	mph(A)	100	906/906	ABNNMT010000080.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.61, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMT010000084.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.71, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNMT010000037.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.40, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNMT010000078.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.58, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNMT010000046.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.51, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNMT010000074.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.50, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNMT010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.70, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNMT010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.72, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNNMT010000033.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.33, whole genome shotgun sequence	12281..13072	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNMT010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.49, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNMT010000073.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.48, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNMT010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.64, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNMT010000032.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.32, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNMT010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.57, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNNMT010000076.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.53, whole genome shotgun sequence	2478..3683	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNMT010000077.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.55, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNMT010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.70, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNMT010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.guided.72, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNMT010000039.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.42, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNMT010000009.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.09, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNMT010000009.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.09, whole genome shotgun sequence	92076..92705		enterobacteriales	IncN	100	513 / 514	ABNNMT010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017531 SAMN37691011-rid19634113.denovo.76, whole genome shotgun sequence	470..982																																		avrA	ABNNMT010000002.1	540381..541250	99.885	870	0						
GCA_032495505.1_PDT001920150.1_genomic.fna	Salmonella_enterica	0.5192	75.351 KB	24	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	-:i:-	20	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaTEM-1B,blaLAP-2,mph(A),lnu(F),lnu(F),mph(A),floR,floR,qnrS1,qnrS1,qnrS10,qnrS1,ARR-2,ARR-2,sul3,sul2,sul2,sul3,tet(B),tet(A),tet(B),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	-	Salmonella enterica subspecies enterica (subspecies I)	I -:i:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNMS010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.001, whole genome shotgun sequence	12474..12911	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNMS010000113.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.116, whole genome shotgun sequence	555..1370	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	EU722351	aph(6)-Id	100	837/837	ABNNMS010000116.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.119, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMS010000116.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.119, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMS010000117.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.120, whole genome shotgun sequence	626..1486	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNMS010000127.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.133, whole genome shotgun sequence	602..1393	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNMS010000153.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.103, whole genome shotgun sequence	7505..7942	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNMS010000157.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.128, whole genome shotgun sequence	762..1577	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	EU722351	aph(6)-Id	100	837/837	ABNNMS010000158.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.131, whole genome shotgun sequence	1680..2516	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMS010000158.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.131, whole genome shotgun sequence	877..1680	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMS010000159.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.134, whole genome shotgun sequence	4..864	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNMS010000160.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.136, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNMS010000100.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.100, whole genome shotgun sequence	8427..9302	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNMS010000123.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.126, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNMS010000131.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.144, whole genome shotgun sequence	146..1006	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNMS010000164.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.142, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNMS010000165.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.143, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNNMS010000169.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.153, whole genome shotgun sequence	3..860	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	mph(A)	100	906/906	ABNNMS010000121.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.124, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMS010000127.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.133, whole genome shotgun sequence	1525..2346	Lincomycin	EU118119	lnu(F)	100	822/822	ABNNMS010000160.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.136, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	mph(A)	100	906/906	ABNNMS010000168.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.151, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.11	1214/1215	ABNNMS010000108.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.110, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNMS010000161.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.138, whole genome shotgun sequence	286..1499	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNMS010000100.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.100, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNMS010000167.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.149, whole genome shotgun sequence	217..873	Ciprofloxacin	AB187515	qnrS10	99.84	629/657	ABNNMS010000170.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.154, whole genome shotgun sequence	1..629	Ciprofloxacin	JN836269	qnrS1	99.84	629/657	ABNNMS010000170.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.154, whole genome shotgun sequence	1..629	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNMS010000129.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.137, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNMS010000166.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.148, whole genome shotgun sequence	124..576	Rifampicin	HQ141279	sul3	100	792/792	ABNNMS010000094.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.094, whole genome shotgun sequence	9929..10720	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNMS010000116.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.119, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNMS010000158.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.131, whole genome shotgun sequence	1..816	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNMS010000163.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.141, whole genome shotgun sequence	677..1468	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNMS010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.096, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNMS010000119.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.122, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNNMS010000156.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.127, whole genome shotgun sequence	1726..2931	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNMS010000162.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.140, whole genome shotgun sequence	335..1534	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNMS010000129.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.137, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNMS010000171.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.guided.167, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNMS010000109.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.111, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNMS010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.061, whole genome shotgun sequence	13670..13996		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNMS010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.091, whole genome shotgun sequence	2703..3332		enterobacteriales	IncN	100	512 / 514	ABNNMS010000137.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017523 SAMN37691007-rid19634123.denovo.155, whole genome shotgun sequence	470..981																																		avrA	ABNNMS010000030.1	61735..62604	99.885	870	0						
GCA_032495525.1_PDT001920148.1_genomic.fna	Salmonella_enterica	0.5165	26.38 KB	56	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aph(3')-Ia,aadA22,aph(3')-Ia,blaCTX-M-55,blaTEM-1B,blaLAP-2,blaLAP-2,blaTEM-1B,blaCTX-M-55,lnu(F),mph(A),lnu(F),mph(A),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul3,sul3,sul2,tet(B),tet(B),tet(B),tet(A),dfrA14,dfrA14	1	gyrA_p.D87G	6	Col(BS512),Col(pHAD28),IncHI2,IncHI2A,IncI2(Delta),IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNMU010000013.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.013, whole genome shotgun sequence	33902..34339	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNMU010000247.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.248, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMU010000247.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.248, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMU010000278.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.282, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNMU010000301.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.308, whole genome shotgun sequence	228..1019	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNMU010000439.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.237, whole genome shotgun sequence	1662..2099	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNMU010000441.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.272, whole genome shotgun sequence	2058..2894	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMU010000441.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.272, whole genome shotgun sequence	1255..2058	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMU010000452.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.347, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNNMU010000454.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.360, whole genome shotgun sequence	6..821	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aadA22	100	792/792	ABNNMU010000458.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.380, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.14	816/816	ABNNMU010000459.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.383, whole genome shotgun sequence	6..821	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU855787	blaCTX-M-55	100	876/876	ABNNMU010000203.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.203, whole genome shotgun sequence	2300..3175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNMU010000306.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.313, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNNMU010000324.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.336, whole genome shotgun sequence	470..1327	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaLAP-2	100	858/858	ABNNMU010000449.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.334, whole genome shotgun sequence	459..1316	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNMU010000450.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.335, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNMU010000451.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.342, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	lnu(F)	100	822/822	ABNNMU010000301.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.308, whole genome shotgun sequence	1151..1972	Lincomycin	EU118119	mph(A)	100	829/906	ABNNMU010000362.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.382, whole genome shotgun sequence	67..895	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMU010000455.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.367, whole genome shotgun sequence	66..887	Lincomycin	EU118119	mph(A)	100	860/906	ABNNMU010000457.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.372, whole genome shotgun sequence	108..967	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.11	1214/1215	ABNNMU010000272.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.276, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNMU010000445.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.304, whole genome shotgun sequence	517..1730	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNMU010000220.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.220, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNMU010000444.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.299, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNMU010000307.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.314, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNMU010000446.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.319, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul2	100	816/816	ABNNMU010000247.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.248, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNMU010000267.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.269, whole genome shotgun sequence	217..1008	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNNMU010000440.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.268, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNMU010000441.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.272, whole genome shotgun sequence	379..1194	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNNMU010000140.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.140, whole genome shotgun sequence	10137..11342	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNMU010000447.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.329, whole genome shotgun sequence	29..1234	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABNNMU010000448.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.330, whole genome shotgun sequence	29..1234	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	961/1200	ABNNMU010000456.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.371, whole genome shotgun sequence	13..973	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNMU010000307.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.314, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNMU010000446.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.guided.319, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																														gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																enterobacteriales	Col(BS512)	100	233 / 233	ABNNMU010000299.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.306, whole genome shotgun sequence	400..632	enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNMU010000205.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.205, whole genome shotgun sequence	1326..1445		enterobacteriales	IncHI2	100	327 / 327	ABNNMU010000003.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.003, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNMU010000003.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.003, whole genome shotgun sequence	92076..92705		enterobacteriales	IncI2(Delta)	98.42	316 / 316	ABNNMU010000011.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.011, whole genome shotgun sequence	27512..27827		enterobacteriales	IncN	100	512 / 514	ABNNMU010000353.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017508 SAMN37691012-rid19634103.denovo.370, whole genome shotgun sequence	471..982																				avrA	ABNNMU010000015.1	7656..8525	99.885	870	0						
GCA_032495545.1_PDT001920147.1_genomic.fna	Salmonella_enterica	0.5186	256.579 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aadA22,aac(3)-IId,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaLAP-2,blaCTX-M-55,blaTEM-1B,mph(A),lnu(F),lnu(F),mph(A),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul3,sul2,sul3,tet(B),tet(A),tet(B),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNMV010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.01, whole genome shotgun sequence	569881..570318	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNMV010000046.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.47, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNNMV010000047.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.49, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMV010000047.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.49, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMV010000052.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.54, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNMV010000057.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.64, whole genome shotgun sequence	945..1736	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNMV010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.60, whole genome shotgun sequence	1629..2066	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNMV010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.61, whole genome shotgun sequence	1987..2823	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMV010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.61, whole genome shotgun sequence	1184..1987	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNNMV010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.63, whole genome shotgun sequence	762..1577	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EU722351	aadA22	100	792/792	ABNNMV010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.70, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	aac(3)-IId	99.88	861/861	ABNNMV010000090.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.76, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	blaCTX-M-55	100	876/876	ABNNMV010000041.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.41, whole genome shotgun sequence	2300..3175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNMV010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.51, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNMV010000063.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.77, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNNMV010000080.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.59, whole genome shotgun sequence	1884..2741	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaCTX-M-55	100	876/876	ABNNMV010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.72, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNMV010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.75, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNNMV010000053.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.56, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMV010000057.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.64, whole genome shotgun sequence	1868..2689	Lincomycin	EU118119	lnu(F)	100	822/822	ABNNMV010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.70, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	mph(A)	100	906/906	ABNNMV010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.79, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.11	1214/1215	ABNNMV010000040.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.40, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNMV010000084.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.69, whole genome shotgun sequence	594..1807	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNMV010000048.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.50, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNMV010000092.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.80, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNMV010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.68, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNMV010000093.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.82, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul2	100	816/816	ABNNMV010000047.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.49, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNMV010000054.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.57, whole genome shotgun sequence	562..1353	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNMV010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.61, whole genome shotgun sequence	308..1123	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNMV010000088.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.73, whole genome shotgun sequence	627..1418	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNMV010000035.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.35, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNMV010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.53, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNNMV010000077.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.45, whole genome shotgun sequence	3819..5024	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNMV010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.71, whole genome shotgun sequence	148..1347	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNMV010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.68, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNMV010000093.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.guided.82, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNMV010000042.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.42, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNMV010000010.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.10, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNMV010000010.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.10, whole genome shotgun sequence	92076..92705		enterobacteriales	IncN	100	513 / 514	ABNNMV010000066.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017522 SAMN37691008-rid19634093.denovo.83, whole genome shotgun sequence	470..982																																		avrA	ABNNMV010000005.1	93863..94732	99.885	870	0						
GCA_032495565.1_PDT001920145.1_genomic.fna	Salmonella_enterica	0.5189	128.562 KB	12	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aph(3')-Ia,aadA22,blaCTX-M-55,blaTEM-1B,blaLAP-2,blaCTX-M-55,blaTEM-1B,blaLAP-2,lnu(F),mph(A),lnu(F),mph(A),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul3,sul2,sul2,sul3,tet(B),tet(B),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNMW010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.001, whole genome shotgun sequence	12480..12917	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNMW010000070.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.072, whole genome shotgun sequence	2552..3367	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNNMW010000072.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.076, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMW010000072.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.076, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMW010000075.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.079, whole genome shotgun sequence	261..1121	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNMW010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.101, whole genome shotgun sequence	132..923	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNMW010000119.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.063, whole genome shotgun sequence	4854..5291	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNMW010000120.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.074, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMW010000120.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.074, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNNMW010000121.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.075, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNNMW010000121.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.075, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMW010000124.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.082, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNNMW010000127.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.097, whole genome shotgun sequence	77..892	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	EU722351	aadA22	100	792/792	ABNNMW010000134.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.118, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNMW010000073.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.077, whole genome shotgun sequence	149..1024	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNMW010000094.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.104, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	820/858	ABNNMW010000101.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.117, whole genome shotgun sequence	1..820	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaCTX-M-55	100	876/876	ABNNMW010000123.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.081, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNMW010000130.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.109, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	851/858	ABNNMW010000132.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.114, whole genome shotgun sequence	1..851	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	lnu(F)	100	822/822	ABNNMW010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.101, whole genome shotgun sequence	1055..1876	Lincomycin	EU118119	mph(A)	100	804/906	ABNNMW010000106.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.125, whole genome shotgun sequence	67..870	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMW010000135.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.120, whole genome shotgun sequence	22..843	Lincomycin	EU118119	mph(A)	100	835/906	ABNNMW010000136.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.121, whole genome shotgun sequence	108..942	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.11	1214/1215	ABNNMW010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.091, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNMW010000125.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.089, whole genome shotgun sequence	1254..2467	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNMW010000069.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.071, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNMW010000131.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.110, whole genome shotgun sequence	75..731	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNMW010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.096, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNMW010000129.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.108, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul2	100	816/816	ABNNMW010000072.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.076, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNMW010000077.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.084, whole genome shotgun sequence	552..1343	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNMW010000120.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.074, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNMW010000121.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.075, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNMW010000133.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.116, whole genome shotgun sequence	7..798	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNMW010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.056, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNMW010000122.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.080, whole genome shotgun sequence	2007..3212	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNMW010000126.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.090, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNMW010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.096, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNMW010000129.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.guided.108, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNMW010000064.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.066, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNMW010000018.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.018, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNMW010000050.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.050, whole genome shotgun sequence	2779..3408		enterobacteriales	IncN	100	512 / 514	ABNNMW010000102.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017506 SAMN37690994-rid19634073.denovo.119, whole genome shotgun sequence	470..981																																		avrA	ABNNMW010000009.1	93863..94732	99.885	870	0						
GCA_032495585.1_PDT001920143.1_genomic.fna	Salmonella_enterica	0.5188	125.103 KB	13	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(3)-IId,aph(3')-Ia,aadA22,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaTEM-1B,blaLAP-2,lnu(F),mph(A),lnu(F),mph(A),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul3,sul3,sul2,tet(B),tet(A),tet(B),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNNA010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.001, whole genome shotgun sequence	379622..380059	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNNA010000072.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.072, whole genome shotgun sequence	555..1370	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	EU722351	aph(6)-Id	100	837/837	ABNNNA010000073.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.075, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNA010000073.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.075, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNA010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.084, whole genome shotgun sequence	261..1121	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNA010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.098, whole genome shotgun sequence	238..1029	Spectinomycin, Streptomycin	AM261837	aac(3)-IId	99.88	861/861	ABNNNA010000120.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.092, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNNNA010000121.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.094, whole genome shotgun sequence	762..1577	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	EU722351	aadA22	100	792/792	ABNNNA010000122.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.100, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNNA010000125.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.103, whole genome shotgun sequence	824..1261	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	804/804	ABNNNA010000127.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.109, whole genome shotgun sequence	35..838	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNNNA010000128.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.110, whole genome shotgun sequence	35..838	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNNNA010000129.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.115, whole genome shotgun sequence	380..1216	Streptomycin	M28829	aph(6)-Id	99.88	837/837	ABNNNA010000130.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.116, whole genome shotgun sequence	380..1216	Streptomycin	M28829	blaCTX-M-55	100	876/876	ABNNNA010000075.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.077, whole genome shotgun sequence	3229..4104	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNA010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.091, whole genome shotgun sequence	1839..2696	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNA010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.108, whole genome shotgun sequence	146..1006	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNNA010000119.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.089, whole genome shotgun sequence	25..900	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNNA010000131.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.118, whole genome shotgun sequence	143..1003	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNNNA010000134.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.124, whole genome shotgun sequence	29..886	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	lnu(F)	100	822/822	ABNNNA010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.098, whole genome shotgun sequence	1161..1982	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNA010000093.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.104, whole genome shotgun sequence	876..1781	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNA010000122.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.100, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNA010000126.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.107, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.11	1214/1215	ABNNNA010000078.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.081, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNNA010000124.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.102, whole genome shotgun sequence	305..1518	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNNA010000074.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.076, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNNA010000133.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.122, whole genome shotgun sequence	97..753	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNNA010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.096, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNNA010000136.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.131, whole genome shotgun sequence	14..466	Rifampicin	HQ141279	sul2	100	816/816	ABNNNA010000073.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.075, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNA010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.086, whole genome shotgun sequence	816..1607	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNNNA010000123.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.101, whole genome shotgun sequence	891..1682	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNNA010000132.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.119, whole genome shotgun sequence	289..1104	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNNNA010000065.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.065, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1046/1275	ABNNNA010000094.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.105, whole genome shotgun sequence	690..1735	Doxycycline, Tetracycline	AF534183	tet(B)	100	1206/1206	ABNNNA010000115.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.073, whole genome shotgun sequence	3604..4809	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNNA010000118.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.088, whole genome shotgun sequence	786..1985	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNNA010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.096, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNNA010000135.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.guided.130, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNNA010000070.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.070, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNNA010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.061, whole genome shotgun sequence	5777..6103		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNNA010000053.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.053, whole genome shotgun sequence	2791..3420		enterobacteriales	IncN	100	513 / 514	ABNNNA010000103.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017513 SAMN37691017-rid19634053.denovo.121, whole genome shotgun sequence	470..982																																		avrA	ABNNNA010000005.1	93863..94732	99.885	870	0						
GCA_032495605.1_PDT001920144.1_genomic.fna	Salmonella_enterica	0.5193	65.355 KB	25	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(3)-IId,aadA22,blaCTX-M-55,blaTEM-1B,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaLAP-2,mph(A),lnu(F),lnu(F),mph(A),floR,floR,qnrS1,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul3,sul2,sul3,tet(B),tet(A),tet(B),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNMX010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.001, whole genome shotgun sequence	12491..12928	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNMX010000117.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.120, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABNNMX010000122.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.126, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMX010000122.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.126, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMX010000129.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.135, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNMX010000143.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.154, whole genome shotgun sequence	238..1029	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNMX010000184.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.030, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNMX010000187.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.124, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMX010000187.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.124, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNNMX010000190.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.141, whole genome shotgun sequence	762..1577	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aac(3)-IId	99.88	861/861	ABNNMX010000193.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.151, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNMX010000195.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.159, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNMX010000111.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.114, whole genome shotgun sequence	2300..3175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNMX010000153.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.169, whole genome shotgun sequence	146..1006	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	837/858	ABNNMX010000163.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.181, whole genome shotgun sequence	1..837	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNMX010000199.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.168, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNMX010000200.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.170, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNMX010000201.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.179, whole genome shotgun sequence	33..890	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	mph(A)	100	906/906	ABNNMX010000131.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.137, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMX010000143.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.154, whole genome shotgun sequence	1161..1982	Lincomycin	EU118119	lnu(F)	100	822/822	ABNNMX010000195.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.159, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	mph(A)	100	906/906	ABNNMX010000198.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.167, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.11	1214/1215	ABNNMX010000123.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.127, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNMX010000194.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.153, whole genome shotgun sequence	511..1724	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNMX010000125.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.129, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNMX010000191.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.146, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	qnrS1	99.85	657/657	ABNNMX010000192.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.147, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNMX010000137.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.144, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNMX010000197.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.162, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul2	100	816/816	ABNNMX010000122.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.126, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNMX010000133.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.139, whole genome shotgun sequence	562..1353	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNMX010000187.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.124, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNMX010000196.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.161, whole genome shotgun sequence	795..1586	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNMX010000128.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.134, whole genome shotgun sequence	2306..3511	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNMX010000188.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.131, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNNMX010000189.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.132, whole genome shotgun sequence	2337..3542	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNNMX010000137.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.144, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNMX010000197.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.guided.162, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNMX010000112.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.115, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNMX010000092.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.095, whole genome shotgun sequence	690..1016		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNMX010000095.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.098, whole genome shotgun sequence	1549..2178		enterobacteriales	IncN	100	513 / 514	ABNNMX010000164.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017512 SAMN37691014-rid19634063.denovo.182, whole genome shotgun sequence	470..982																																		avrA	ABNNMX010000008.1	61078..61947	99.885	870	0						
GCA_032495625.1_PDT001920142.1_genomic.fna	Salmonella_enterica	0.5191	144.748 KB	12	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	17	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aac(6')-Iaa,aph(3')-Ia,aadA22,blaLAP-2,blaTEM-1B,blaLAP-2,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul2,sul2,sul3,tet(A),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNMY010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.001, whole genome shotgun sequence	145154..145591	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNMY010000067.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.069, whole genome shotgun sequence	555..1370	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EU722351	aph(6)-Id	100	837/837	ABNNMY010000070.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.074, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMY010000070.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.074, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMY010000074.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.079, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNMY010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.097, whole genome shotgun sequence	238..1029	Spectinomycin, Streptomycin	AM261837	aph(6)-Id	100	837/837	ABNNMY010000117.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.072, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMY010000117.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.072, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMY010000119.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.078, whole genome shotgun sequence	305..1165	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aac(6')-Iaa	100	438/438	ABNNMY010000120.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.080, whole genome shotgun sequence	235..672	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNMY010000123.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.087, whole genome shotgun sequence	762..1577	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EU722351	aadA22	100	792/792	ABNNMY010000126.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.098, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaLAP-2	100	858/858	ABNNMY010000060.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.061, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNMY010000094.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.108, whole genome shotgun sequence	128..988	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNNMY010000127.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.101, whole genome shotgun sequence	766..1623	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNMY010000129.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.109, whole genome shotgun sequence	413..1273	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNNMY010000075.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.081, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMY010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.097, whole genome shotgun sequence	1161..1982	Lincomycin	EU118119	mph(A)	100	906/906	ABNNMY010000122.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.086, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMY010000126.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.098, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNMY010000073.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.077, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNMY010000124.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.091, whole genome shotgun sequence	990..2203	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNMY010000060.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.061, whole genome shotgun sequence	4509..5165	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNMY010000125.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.092, whole genome shotgun sequence	1415..2071	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNMY010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.099, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNMY010000128.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.102, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNNMY010000054.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.055, whole genome shotgun sequence	12282..13073	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNMY010000070.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.074, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNMY010000117.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.072, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNMY010000118.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.073, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(A)	100	1200/1200	ABNNMY010000066.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.068, whole genome shotgun sequence	3214..4413	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNMY010000121.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.085, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNMY010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.099, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNMY010000128.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.guided.102, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNMY010000063.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.065, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNMY010000027.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.027, whole genome shotgun sequence	33652..33978		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNMY010000027.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.027, whole genome shotgun sequence	51962..52591		enterobacteriales	IncN	100	513 / 514	ABNNMY010000095.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017520 SAMN37690993-rid19634043.denovo.110, whole genome shotgun sequence	469..981																																		avrA	ABNNMY010000003.1	61079..61948	99.885	870	0						
GCA_032495645.1_PDT001920141.1_genomic.fna	Salmonella_enterica	0.5185	184.265 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	18	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aac(3)-IId,aph(3')-Ia,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aadA22,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaTEM-1B,blaLAP-2,mph(A),lnu(F),lnu(F),mph(A),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul3,sul3,sul2,sul2,tet(B),tet(B),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNMZ010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.01, whole genome shotgun sequence	569735..570172	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNMZ010000043.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.45, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABNNMZ010000046.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.50, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMZ010000046.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.50, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNMZ010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.57, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNMZ010000058.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.66, whole genome shotgun sequence	946..1737	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNMZ010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.49, whole genome shotgun sequence	1813..2250	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNNMZ010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.68, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNNMZ010000088.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.69, whole genome shotgun sequence	762..1577	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aph(3'')-Ib	100	804/804	ABNNMZ010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.70, whole genome shotgun sequence	1176..1979	Streptomycin	AF321551	aph(3'')-Ib	100	804/804	ABNNMZ010000090.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.71, whole genome shotgun sequence	1176..1979	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNNMZ010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.72, whole genome shotgun sequence	1196..2032	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMZ010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.72, whole genome shotgun sequence	393..1196	Streptomycin	AF321551	aph(6)-Id	99.88	837/837	ABNNMZ010000092.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.73, whole genome shotgun sequence	1196..2032	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNMZ010000092.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.73, whole genome shotgun sequence	393..1196	Streptomycin	AF321551	aadA22	100	792/792	ABNNMZ010000093.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.74, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNMZ010000040.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.42, whole genome shotgun sequence	4172..5047	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNMZ010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.63, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNMZ010000063.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.81, whole genome shotgun sequence	146..1006	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNMZ010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.53, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNMZ010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.80, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNNMZ010000098.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.85, whole genome shotgun sequence	48..905	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	mph(A)	100	906/906	ABNNMZ010000052.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.58, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNMZ010000058.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.66, whole genome shotgun sequence	1869..2690	Lincomycin	EU118119	lnu(F)	100	822/822	ABNNMZ010000093.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.74, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	mph(A)	100	906/906	ABNNMZ010000097.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.83, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.11	1214/1215	ABNNMZ010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.48, whole genome shotgun sequence	868..2081	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNMZ010000094.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.76, whole genome shotgun sequence	282..1495	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNMZ010000048.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.52, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNMZ010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.62, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNMZ010000060.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.75, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNMZ010000095.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.77, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul2	100	816/816	ABNNMZ010000046.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.50, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNMZ010000054.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.60, whole genome shotgun sequence	562..1353	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNNMZ010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.64, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNMZ010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.70, whole genome shotgun sequence	300..1115	Sulfamethoxazole	HQ840942	sul2	99.88	816/816	ABNNMZ010000090.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.71, whole genome shotgun sequence	300..1115	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNNMZ010000035.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.35, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNMZ010000084.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.55, whole genome shotgun sequence	2318..3523	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNNMZ010000060.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.75, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNMZ010000095.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.guided.77, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																													enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNMZ010000041.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.43, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNMZ010000008.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.08, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNMZ010000008.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.08, whole genome shotgun sequence	92076..92705		enterobacteriales	IncN	100	512 / 514	ABNNMZ010000066.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017514 SAMN37691003-rid19634033.denovo.86, whole genome shotgun sequence	471..982																																		avrA	ABNNMZ010000002.1	539853..540722	99.885	870	0						
GCA_032495665.1_PDT001920140.1_genomic.fna	Salmonella_enterica	0.5185	271.558 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	18	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aadA22,aac(3)-IId,aac(3)-IId,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaTEM-1B,blaCTX-M-55,blaLAP-2,lnu(F),mph(A),lnu(F),mph(A),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul3,sul2,sul2,sul3,tet(B),tet(B),dfrA14,dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNNB010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.01, whole genome shotgun sequence	591136..591573	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNNB010000039.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.40, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNNNB010000041.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.42, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNB010000041.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.42, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNB010000047.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.51, whole genome shotgun sequence	261..1121	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNB010000055.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.63, whole genome shotgun sequence	90..881	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNNB010000077.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.39, whole genome shotgun sequence	218..655	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNNB010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.56, whole genome shotgun sequence	2078..2914	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNB010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.56, whole genome shotgun sequence	1275..2078	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNNNB010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.57, whole genome shotgun sequence	2078..2914	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNNNB010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.57, whole genome shotgun sequence	1275..2078	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNNNB010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.59, whole genome shotgun sequence	762..1577	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EU722351	aadA22	100	792/792	ABNNNB010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.64, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	aac(3)-IId	99.88	861/861	ABNNNB010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.74, whole genome shotgun sequence	1..861	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aac(3)-IId	99.77	861/861	ABNNNB010000092.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.75, whole genome shotgun sequence	1..861	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	blaCTX-M-55	100	876/876	ABNNNB010000037.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.37, whole genome shotgun sequence	2300..3175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNB010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.53, whole genome shotgun sequence	1441..2298	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNB010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.65, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNNNB010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.68, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNNB010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.69, whole genome shotgun sequence	9..884	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNB010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.71, whole genome shotgun sequence	468..1325	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	lnu(F)	100	822/822	ABNNNB010000055.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.63, whole genome shotgun sequence	1013..1834	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNB010000062.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.79, whole genome shotgun sequence	67..972	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNB010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.64, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNB010000093.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.77, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.11	1214/1215	ABNNNB010000042.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.43, whole genome shotgun sequence	876..2089	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNNB010000088.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.70, whole genome shotgun sequence	243..1456	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNNB010000043.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.44, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNNB010000084.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.62, whole genome shotgun sequence	96..752	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNNB010000054.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.61, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNNB010000094.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.83, whole genome shotgun sequence	76..528	Rifampicin	HQ141279	sul2	100	816/816	ABNNNB010000041.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.42, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNB010000050.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.54, whole genome shotgun sequence	562..1353	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNNB010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.56, whole genome shotgun sequence	399..1214	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNNB010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.57, whole genome shotgun sequence	399..1214	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNB010000090.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.72, whole genome shotgun sequence	439..1230	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNNB010000033.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNNB010000078.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.48, whole genome shotgun sequence	2290..3495	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNNNB010000054.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.61, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNNB010000095.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.89, whole genome shotgun sequence	7..480	Trimethoprim	KF921535	dfrA14	99.79	474/474	ABNNNB010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.guided.91, whole genome shotgun sequence	7..479	Trimethoprim	KF921535																																																																																																																																																																																													enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNNB010000038.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.38, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNNB010000012.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.12, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNNB010000012.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.12, whole genome shotgun sequence	92076..92705		enterobacteriales	IncN	100	514 / 514	ABNNNB010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017516 SAMN37691004-rid19634023.denovo.78, whole genome shotgun sequence	471..984																																		avrA	ABNNNB010000002.1	540744..541613	99.885	870	0						
GCA_032495685.1_PDT001920139.1_genomic.fna	Salmonella_enterica	0.5187	223.58 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(3)-IId,aadA22,blaCTX-M-55,blaTEM-1B,blaLAP-2,blaTEM-1B,blaLAP-2,blaCTX-M-55,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul2,sul2,sul3,sul3,tet(B),tet(A),tet(B),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNNC010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.01, whole genome shotgun sequence	581108..581545	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNNC010000048.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.49, whole genome shotgun sequence	555..1370	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(6)-Id	100	837/837	ABNNNC010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.55, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNC010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.55, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNC010000055.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.61, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNC010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.66, whole genome shotgun sequence	945..1736	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNNC010000075.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.53, whole genome shotgun sequence	2342..2779	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNNC010000078.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.59, whole genome shotgun sequence	3067..3903	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNC010000078.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.59, whole genome shotgun sequence	2264..3067	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNNNC010000080.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.69, whole genome shotgun sequence	762..1577	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aac(3)-IId	99.88	861/861	ABNNNC010000084.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.75, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNC010000090.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.82, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNNC010000044.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.45, whole genome shotgun sequence	2300..3175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNNC010000047.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.48, whole genome shotgun sequence	501..1361	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNNNC010000047.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.48, whole genome shotgun sequence	3565..4422	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNC010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.74, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNNNC010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.79, whole genome shotgun sequence	233..1090	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaCTX-M-55	100	876/876	ABNNNC010000088.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.80, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	mph(A)	100	906/906	ABNNNC010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.62, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNC010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.66, whole genome shotgun sequence	1868..2689	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNC010000079.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.63, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNC010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.84, whole genome shotgun sequence	1..822	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNNC010000042.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.43, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNNC010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.73, whole genome shotgun sequence	89..1302	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNNC010000052.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.56, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNNC010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.81, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNNC010000063.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.71, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNNC010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.72, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNNNC010000035.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.35, whole genome shotgun sequence	12282..13073	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNNC010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.55, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNNC010000078.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.59, whole genome shotgun sequence	1388..2203	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNC010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.76, whole genome shotgun sequence	337..1128	Sulfamethoxazole	AJ459418	sul3	99.87	792/792	ABNNNC010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.77, whole genome shotgun sequence	337..1128	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNNC010000036.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.37, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNNC010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.51, whole genome shotgun sequence	2385..3584	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNNNC010000076.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.54, whole genome shotgun sequence	3212..4417	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNNC010000077.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.57, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNNC010000063.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.71, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNNC010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.guided.72, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																											enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNNC010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.46, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNNC010000022.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.22, whole genome shotgun sequence	43513..43839		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNNC010000022.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.22, whole genome shotgun sequence	61823..62452		enterobacteriales	IncN	100	513 / 514	ABNNNC010000065.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017503 SAMN37690991-rid19634013.denovo.83, whole genome shotgun sequence	470..982																																		avrA	ABNNNC010000002.1	93863..94732	99.885	870	0						
GCA_032495705.1_PDT001920138.1_genomic.fna	Salmonella_enterica	0.5195	58.273 KB	30	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(3)-IId,aadA22,blaCTX-M-55,blaTEM-1B,blaLAP-2,blaTEM-1B,blaLAP-2,blaCTX-M-55,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul3,sul2,sul3,tet(A),tet(B),tet(B),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNNE010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.001, whole genome shotgun sequence	38016..38453	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNNE010000127.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.130, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(6)-Id	100	837/837	ABNNNE010000131.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.135, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNE010000131.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.135, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNE010000138.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.142, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNE010000149.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.155, whole genome shotgun sequence	935..1726	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNNE010000191.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.086, whole genome shotgun sequence	7273..7710	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNNE010000194.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.134, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNE010000194.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.134, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNNNE010000196.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.154, whole genome shotgun sequence	762..1577	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aac(3)-IId	99.88	861/861	ABNNNE010000197.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.164, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNE010000208.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.189, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNNE010000128.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.131, whole genome shotgun sequence	4171..5046	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNNE010000140.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.144, whole genome shotgun sequence	520..1380	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	813/858	ABNNNE010000168.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.184, whole genome shotgun sequence	1..813	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNE010000200.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.169, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	844/858	ABNNNE010000205.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.182, whole genome shotgun sequence	1..844	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaCTX-M-55	100	876/876	ABNNNE010000206.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.186, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	mph(A)	100	906/906	ABNNNE010000141.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.145, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNE010000149.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.155, whole genome shotgun sequence	1858..2679	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNE010000204.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.177, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNE010000207.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.187, whole genome shotgun sequence	12..833	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNNE010000122.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.125, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNNE010000201.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.170, whole genome shotgun sequence	264..1477	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNNE010000165.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.180, whole genome shotgun sequence	17..673	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNNE010000203.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.176, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNNE010000151.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.157, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNNE010000198.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.167, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul2	100	816/816	ABNNNE010000131.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.135, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNE010000142.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.146, whole genome shotgun sequence	562..1353	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNNE010000194.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.134, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNE010000199.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.168, whole genome shotgun sequence	632..1423	Sulfamethoxazole	AJ459418	tet(A)	100	1200/1200	ABNNNE010000136.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.140, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNNNE010000137.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.141, whole genome shotgun sequence	2279..3484	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNNE010000195.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.150, whole genome shotgun sequence	1805..3010	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNNE010000202.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.175, whole genome shotgun sequence	50..1249	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNNE010000151.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.157, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNNE010000198.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.guided.167, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNNE010000124.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.127, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNNE010000063.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.063, whole genome shotgun sequence	13641..13967		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNNE010000101.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.103, whole genome shotgun sequence	2714..3343		enterobacteriales	IncN	100	512 / 514	ABNNNE010000169.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017504 SAMN37691006-rid19634003.denovo.185, whole genome shotgun sequence	470..981																																		avrA	ABNNNE010000008.1	93863..94732	99.885	870	0						
GCA_032495725.1_PDT001920137.1_genomic.fna	Salmonella_enterica	0.5187	223.58 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aph(3')-Ia,aadA22,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaLAP-2,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul3,sul2,sul3,tet(B),tet(A),tet(B),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNND010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.001, whole genome shotgun sequence	145322..145759	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNND010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.053, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABNNND010000050.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.055, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNND010000050.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.055, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNND010000055.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.064, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNND010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.075, whole genome shotgun sequence	946..1737	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNND010000092.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.037, whole genome shotgun sequence	4006..4443	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNND010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.054, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNND010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.054, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNND010000101.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.065, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNNND010000105.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.074, whole genome shotgun sequence	762..1577	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aadA22	100	792/792	ABNNND010000106.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.080, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNND010000043.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.046, whole genome shotgun sequence	4152..5027	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNND010000060.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.072, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNND010000069.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.086, whole genome shotgun sequence	146..1006	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNND010000098.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.058, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNND010000103.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.071, whole genome shotgun sequence	2096..2953	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNND010000108.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.085, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNNND010000057.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.068, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNND010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.075, whole genome shotgun sequence	1869..2690	Lincomycin	EU118119	mph(A)	100	906/906	ABNNND010000102.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.067, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNND010000106.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.080, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNND010000044.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.048, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNND010000100.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.063, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNND010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.057, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNND010000097.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.056, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNND010000064.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.078, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNND010000107.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.082, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul2	100	816/816	ABNNND010000050.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.055, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNND010000058.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.069, whole genome shotgun sequence	562..1353	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNND010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.054, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNND010000104.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.073, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNND010000038.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.040, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNND010000054.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.062, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNNND010000095.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.047, whole genome shotgun sequence	5245..6450	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNND010000099.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.060, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNND010000064.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.078, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNND010000107.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.guided.082, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNND010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.049, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNND010000018.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.018, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNND010000033.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.033, whole genome shotgun sequence	11024..11653		enterobacteriales	IncN	100	513 / 514	ABNNND010000073.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017525 SAMN37691016-rid19633993.denovo.090, whole genome shotgun sequence	470..982																																		avrA	ABNNND010000002.1	540631..541500	99.885	870	0						
GCA_032495745.1_PDT001920136.1_genomic.fna	Salmonella_enterica	0.519	113.906 KB	11	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(3)-IId,aadA22,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaTEM-1B,blaLAP-2,mph(A),lnu(F),lnu(F),mph(A),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul2,sul2,sul3,tet(B),tet(A),tet(B),tet(A),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNNF010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.001, whole genome shotgun sequence	476616..477053	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNNF010000064.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.068, whole genome shotgun sequence	555..1370	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABNNNF010000065.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.070, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNF010000065.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.070, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNF010000071.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.076, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNF010000080.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.090, whole genome shotgun sequence	333..1124	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNNF010000101.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.036, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNNF010000105.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.069, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNF010000105.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.069, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNNNF010000109.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.084, whole genome shotgun sequence	762..1577	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	EU722351	aac(3)-IId	99.88	861/861	ABNNNF010000111.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.092, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNF010000118.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.107, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNNF010000067.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.072, whole genome shotgun sequence	3229..4104	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNF010000068.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.073, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNF010000084.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.097, whole genome shotgun sequence	146..1006	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNNF010000110.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.087, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNNF010000113.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.096, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNNNF010000114.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.098, whole genome shotgun sequence	436..1293	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	mph(A)	100	906/906	ABNNNF010000072.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.079, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNF010000080.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.090, whole genome shotgun sequence	1256..2077	Lincomycin	EU118119	lnu(F)	100	822/822	ABNNNF010000116.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.104, whole genome shotgun sequence	155..976	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNF010000117.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.105, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.11	1214/1215	ABNNNF010000066.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.071, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNNF010000108.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.081, whole genome shotgun sequence	1429..2642	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNNF010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.101, whole genome shotgun sequence	156..812	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNNF010000115.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.102, whole genome shotgun sequence	408..1064	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNNF010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.093, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNNF010000112.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.095, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNNNF010000057.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.060, whole genome shotgun sequence	7018..7809	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNNF010000065.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.070, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNNF010000105.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.069, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNF010000119.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.108, whole genome shotgun sequence	39..830	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNNF010000054.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.057, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNNF010000070.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.075, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNNNF010000104.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.067, whole genome shotgun sequence	3851..5056	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	99.92	1200/1200	ABNNNF010000106.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.077, whole genome shotgun sequence	819..2018	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNNF010000107.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.078, whole genome shotgun sequence	819..2018	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNNF010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.093, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNNF010000112.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.guided.095, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																											enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNNF010000062.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.065, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNNF010000032.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.032, whole genome shotgun sequence	21174..21500		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNNF010000032.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.032, whole genome shotgun sequence	39484..40113		enterobacteriales	IncN	100	513 / 514	ABNNNF010000090.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017505 SAMN37691005-rid19633983.denovo.109, whole genome shotgun sequence	470..982																																		avrA	ABNNNF010000002.1	93863..94732	99.885	870	0						
GCA_032495765.1_PDT001920135.1_genomic.fna	Salmonella_enterica	0.5186	257.427 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aac(3)-IId,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aadA22,aadA22,blaCTX-M-55,blaTEM-1B,blaLAP-2,blaCTX-M-55,blaTEM-1B,blaLAP-2,lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul2,sul3,tet(B),tet(B),tet(A),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNNI010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.001, whole genome shotgun sequence	569611..570048	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNNI010000044.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.044, whole genome shotgun sequence	555..1370	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNNNI010000046.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.046, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNI010000046.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.046, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNI010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.051, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNI010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.069, whole genome shotgun sequence	238..1029	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNNI010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.050, whole genome shotgun sequence	795..1232	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNNNI010000092.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.058, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNNNI010000093.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.060, whole genome shotgun sequence	762..1577	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNNNI010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.072, whole genome shotgun sequence	1084..1920	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNI010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.072, whole genome shotgun sequence	281..1084	Streptomycin	AF321551	aadA22	100	654/792	ABNNNI010000100.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.077, whole genome shotgun sequence	1..654	Spectinomycin, Streptomycin	AM261837	aadA22	100	792/792	ABNNNI010000105.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.093, whole genome shotgun sequence	28..819	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNNI010000009.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.009, whole genome shotgun sequence	60891..61766	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNNI010000067.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.084, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNNNI010000073.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.092, whole genome shotgun sequence	34..891	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaCTX-M-55	100	876/876	ABNNNI010000097.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.074, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNNI010000102.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.083, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNNNI010000103.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.087, whole genome shotgun sequence	85..942	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	lnu(F)	100	822/822	ABNNNI010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.069, whole genome shotgun sequence	1161..1982	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNI010000088.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.052, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNI010000100.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.077, whole genome shotgun sequence	786..1607	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNNI010000060.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.070, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNNI010000098.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.075, whole genome shotgun sequence	453..1666	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNNI010000039.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.039, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNNI010000095.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.067, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNNI010000057.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.065, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNNI010000099.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.076, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul2	100	816/816	ABNNNI010000046.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.046, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNNI010000094.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.066, whole genome shotgun sequence	1533..2348	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNI010000104.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.091, whole genome shotgun sequence	101..892	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNNI010000033.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.033, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNNI010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.047, whole genome shotgun sequence	2421..3626	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNNI010000090.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.055, whole genome shotgun sequence	291..1490	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABNNNI010000101.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.082, whole genome shotgun sequence	216..1490	Doxycycline, Tetracycline	AF534183	dfrA14	100	474/474	ABNNNI010000057.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.065, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNNI010000099.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.guided.076, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																									enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNNI010000041.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.041, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNNI010000017.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.017, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNNI010000034.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.034, whole genome shotgun sequence	2854..3483		enterobacteriales	IncN	100	512 / 514	ABNNNI010000074.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017507 SAMN37691010-rid19633973.denovo.094, whole genome shotgun sequence	470..981																																		avrA	ABNNNI010000010.1	93865..94734	99.885	870	0						
GCA_032495785.1_PDT001920134.1_genomic.fna	Salmonella_enterica	0.5187	271.558 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	20	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aac(3)-IId,aph(3')-Ia,aadA22,aph(6)-Id,aph(3'')-Ib,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaCTX-M-55,blaCTX-M-164,blaLAP-2,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul3,sul3,sul2,tet(B),tet(A),tet(B),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNNH010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.001, whole genome shotgun sequence	569676..570113	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNNH010000046.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.050, whole genome shotgun sequence	555..1370	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNNNH010000050.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.054, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNH010000050.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.054, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNH010000054.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.063, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNH010000066.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.080, whole genome shotgun sequence	238..1029	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNNH010000090.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.031, whole genome shotgun sequence	24467..24904	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNNNH010000099.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.064, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNNNH010000103.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.074, whole genome shotgun sequence	762..1577	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	EU722351	aadA22	100	792/792	ABNNNH010000105.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.082, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	aph(6)-Id	100	837/837	ABNNNH010000107.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.086, whole genome shotgun sequence	821..1657	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNH010000107.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.086, whole genome shotgun sequence	18..821	Streptomycin	AF321551	blaCTX-M-55	100	876/876	ABNNNH010000042.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.046, whole genome shotgun sequence	2300..3175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNH010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.070, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNH010000070.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.089, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNNH010000095.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.057, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaCTX-M-55	99.75	795/876	ABNNNH010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.058, whole genome shotgun sequence	1..795	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaCTX-M-164	99.75	795/876	ABNNNH010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.058, whole genome shotgun sequence	1..795	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	KP727571	blaLAP-2	100	858/858	ABNNNH010000104.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.081, whole genome shotgun sequence	882..1739	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNH010000108.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.088, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNNNH010000055.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.066, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNH010000066.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.080, whole genome shotgun sequence	1161..1982	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNH010000100.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.065, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNH010000105.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.082, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNNH010000041.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.045, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNNH010000098.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.062, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNNH010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.056, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNNH010000094.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.055, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNNH010000067.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.083, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNNH010000106.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.085, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul2	100	816/816	ABNNNH010000050.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.054, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNH010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.067, whole genome shotgun sequence	562..1353	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNNNH010000101.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.071, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNNH010000102.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.073, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNNNH010000036.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.039, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNNH010000053.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.061, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNNNH010000093.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.044, whole genome shotgun sequence	5245..6450	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNNH010000097.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.059, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNNH010000067.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.083, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNNH010000106.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.guided.085, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNNH010000043.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.047, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNNH010000014.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.014, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNNH010000014.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.014, whole genome shotgun sequence	92076..92705		enterobacteriales	IncN	100	513 / 514	ABNNNH010000073.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017533 SAMN37691020-rid19633963.denovo.092, whole genome shotgun sequence	470..982																																		avrA	ABNNNH010000002.1	540631..541500	99.885	870	0						
GCA_032495805.1_PDT001920133.1_genomic.fna	Salmonella_enterica	0.5187	257.195 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	18	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aph(3')-Ia,aadA22,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaLAP-2,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul2,sul2,sul3,tet(B),tet(B),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNNG010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.01, whole genome shotgun sequence	569702..570139	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNNG010000048.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.51, whole genome shotgun sequence	555..1370	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABNNNG010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.55, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNG010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.55, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNG010000054.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.61, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNG010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.72, whole genome shotgun sequence	877..1668	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNNG010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.38, whole genome shotgun sequence	9207..9644	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNNG010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.54, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNG010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.54, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNG010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.63, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNNNG010000092.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.70, whole genome shotgun sequence	762..1577	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	EU722351	aadA22	100	792/792	ABNNNG010000093.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.75, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNNG010000044.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.47, whole genome shotgun sequence	2300..3175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNG010000057.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.68, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNG010000064.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.80, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNNG010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.58, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNG010000090.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.67, whole genome shotgun sequence	2096..2953	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNG010000095.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.79, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNNNG010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.65, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNG010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.72, whole genome shotgun sequence	1800..2621	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNG010000088.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.64, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNG010000093.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.75, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNNG010000043.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.46, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNNG010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.60, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNNG010000052.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.57, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNNG010000084.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.56, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNNG010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.74, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNNG010000094.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.76, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNNNG010000035.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.36, whole genome shotgun sequence	12282..13073	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNNG010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.55, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNNG010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.54, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNG010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.69, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNNG010000036.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.39, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNNG010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.66, whole genome shotgun sequence	1704..2909	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNNNG010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.74, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNNG010000094.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.guided.76, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNNG010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.48, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNNG010000013.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.13, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNNG010000013.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.13, whole genome shotgun sequence	92076..92705		enterobacteriales	IncN	100	513 / 514	ABNNNG010000068.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017528 SAMN37690999-rid19633953.denovo.84, whole genome shotgun sequence	470..982																																		avrA	ABNNNG010000002.1	540628..541497	99.885	870	0						
GCA_032495825.1_PDT001920130.1_genomic.fna	Salmonella_enterica	0.518	214.323 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	18	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aph(3')-Ia,aadA22,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaLAP-2,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul3,sul2,sul3,tet(B),tet(B),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNNK010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.001, whole genome shotgun sequence	145365..145802	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNNK010000048.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.052, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EU722351	aph(6)-Id	100	837/837	ABNNNK010000052.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.057, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNK010000052.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.057, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNK010000055.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.063, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNK010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.073, whole genome shotgun sequence	935..1726	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNNK010000088.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.012, whole genome shotgun sequence	31468..31905	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNNK010000092.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.055, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNK010000092.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.055, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNK010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.064, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNNNK010000099.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.072, whole genome shotgun sequence	762..1577	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EU722351	aadA22	100	792/792	ABNNNK010000101.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.079, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNNK010000044.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.048, whole genome shotgun sequence	2300..3175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNK010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.069, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNK010000066.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.082, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNNK010000094.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.060, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNK010000100.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.077, whole genome shotgun sequence	1228..2085	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNK010000103.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.081, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNNNK010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.066, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNK010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.073, whole genome shotgun sequence	1858..2679	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNK010000097.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.065, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNK010000101.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.079, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNNK010000043.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.047, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNNK010000095.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.062, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNNK010000053.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.059, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNNK010000093.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.058, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNNK010000065.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.078, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNNK010000102.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.080, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul2	100	816/816	ABNNNK010000052.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.057, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNK010000057.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.067, whole genome shotgun sequence	562..1353	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNNK010000092.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.055, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNK010000098.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.070, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNNK010000037.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.040, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNNK010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.045, whole genome shotgun sequence	5245..6450	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNNNK010000065.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.078, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNNK010000102.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.guided.080, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNNK010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.049, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNNK010000016.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.017, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNNK010000016.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.017, whole genome shotgun sequence	92076..92705		enterobacteriales	IncN	100	513 / 514	ABNNNK010000070.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017529 SAMN37690998-rid19633923.denovo.086, whole genome shotgun sequence	470..982																																		avrA	ABNNNK010000002.1	434676..435545	99.885	870	0						
GCA_032495845.1_PDT001920132.1_genomic.fna	Salmonella_enterica	0.5181	214.236 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aph(3')-Ia,aadA22,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaLAP-2,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul2,sul2,sul3,tet(B),tet(A),tet(B),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNNJ010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.01, whole genome shotgun sequence	145524..145961	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNNJ010000046.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.50, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABNNNJ010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.56, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNJ010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.56, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNJ010000055.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.64, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNJ010000058.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.72, whole genome shotgun sequence	790..1581	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNNJ010000075.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.13, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNNJ010000079.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.54, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNJ010000079.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.54, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNJ010000084.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.65, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNNNJ010000088.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.71, whole genome shotgun sequence	762..1577	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aadA22	100	792/792	ABNNNJ010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.76, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNNJ010000043.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.47, whole genome shotgun sequence	2300..3175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNJ010000057.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.69, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNJ010000062.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.78, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNNJ010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.59, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNJ010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.68, whole genome shotgun sequence	2096..2953	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNJ010000090.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.77, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNNNJ010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.67, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNJ010000058.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.72, whole genome shotgun sequence	1713..2534	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNJ010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.66, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNJ010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.76, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNNJ010000042.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.46, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNNJ010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.63, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNNJ010000052.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.58, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNNJ010000080.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.57, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNNJ010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.75, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNNJ010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.81, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNNNJ010000037.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.40, whole genome shotgun sequence	12282..13073	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNNJ010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.56, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNNJ010000079.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.54, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNJ010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.70, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNNJ010000036.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.38, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNNJ010000054.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.62, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNNNJ010000078.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.44, whole genome shotgun sequence	5245..6450	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNNJ010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.60, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNNJ010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.75, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNNJ010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.guided.81, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNNJ010000044.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.48, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNNJ010000016.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.17, whole genome shotgun sequence	73687..74013		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNNJ010000016.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.17, whole genome shotgun sequence	91997..92626		enterobacteriales	IncN	100	513 / 514	ABNNNJ010000065.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017524 SAMN37690997-rid19633943.denovo.82, whole genome shotgun sequence	470..982																																		avrA	ABNNNJ010000002.1	434674..435543	99.885	870	0						
GCA_032495865.1_PDT001920128.1_genomic.fna	Salmonella_enterica	0.5185	271.558 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	18	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aadA22,aac(6')-Iaa,aac(3)-IId,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaLAP-2,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul3,sul2,sul3,tet(B),tet(B),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNNN010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.01, whole genome shotgun sequence	580876..581313	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNNN010000040.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.41, whole genome shotgun sequence	555..1370	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNNNN010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.46, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNN010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.46, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNN010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.51, whole genome shotgun sequence	261..1121	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNN010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.63, whole genome shotgun sequence	591..1382	Spectinomycin, Streptomycin	AM261837	aph(6)-Id	100	837/837	ABNNNN010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.50, whole genome shotgun sequence	2921..3757	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNN010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.50, whole genome shotgun sequence	2118..2921	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNNNN010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.56, whole genome shotgun sequence	762..1577	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin	EU722351	aadA22	100	792/792	ABNNNN010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.66, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNNN010000090.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.68, whole genome shotgun sequence	82..519	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNNNN010000095.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.79, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	blaCTX-M-55	100	876/876	ABNNNN010000035.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.35, whole genome shotgun sequence	2300..3175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNN010000047.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.48, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNN010000060.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.75, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNNN010000084.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.57, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNN010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.58, whole genome shotgun sequence	1820..2677	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNN010000092.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.72, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNNNN010000050.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.52, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNN010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.63, whole genome shotgun sequence	1514..2335	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNN010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.64, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNN010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.66, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNNN010000044.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.45, whole genome shotgun sequence	877..2090	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNNN010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.62, whole genome shotgun sequence	1393..2606	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNNN010000046.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.47, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNNN010000094.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.74, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNNN010000057.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.67, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNNN010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.70, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul2	100	816/816	ABNNNN010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.46, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNN010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.53, whole genome shotgun sequence	562..1353	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNNN010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.50, whole genome shotgun sequence	1242..2057	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNN010000093.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.73, whole genome shotgun sequence	681..1472	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNNN010000033.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.33, whole genome shotgun sequence	10137..11342	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNNN010000080.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.40, whole genome shotgun sequence	3959..5164	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNNNN010000057.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.67, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNNN010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.guided.70, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNNN010000036.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.36, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNNN010000011.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.11, whole genome shotgun sequence	43590..43916		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNNN010000011.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.11, whole genome shotgun sequence	61900..62529		enterobacteriales	IncN	100	513 / 514	ABNNNN010000065.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017519 SAMN37691001-rid19633903.denovo.81, whole genome shotgun sequence	470..982																																		avrA	ABNNNN010000002.1	539643..540512	99.885	870	0						
GCA_032495885.1_PDT001920129.1_genomic.fna	Salmonella_enterica	0.5187	170.199 KB	9	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA22,aac(3)-IId,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaTEM-1B,blaLAP-2,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul3,sul2,sul2,sul3,tet(B),tet(B),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNNM010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.001, whole genome shotgun sequence	461292..461729	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNNM010000060.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.060, whole genome shotgun sequence	555..1370	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABNNNM010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.062, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNM010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.062, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNM010000065.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.067, whole genome shotgun sequence	261..1121	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNM010000070.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.075, whole genome shotgun sequence	945..1736	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	100	816/816	ABNNNM010000099.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.074, whole genome shotgun sequence	762..1577	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aac(6')-Iaa	100	438/438	ABNNNM010000100.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.076, whole genome shotgun sequence	221..658	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNNM010000101.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.078, whole genome shotgun sequence	1679..2515	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNM010000101.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.078, whole genome shotgun sequence	876..1679	Streptomycin	AF321551	aadA22	100	792/792	ABNNNM010000107.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.091, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	aac(3)-IId	99.88	861/861	ABNNNM010000111.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.097, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	blaCTX-M-55	100	876/876	ABNNNM010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.056, whole genome shotgun sequence	4152..5027	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNM010000068.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.072, whole genome shotgun sequence	2048..2905	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNM010000079.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.092, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNNM010000103.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.080, whole genome shotgun sequence	23..898	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNNM010000106.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.090, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNNNM010000112.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.099, whole genome shotgun sequence	61..918	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	mph(A)	100	906/906	ABNNNM010000066.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.069, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNM010000070.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.075, whole genome shotgun sequence	1868..2689	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNM010000102.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.079, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNM010000108.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.093, whole genome shotgun sequence	495..1316	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNNM010000064.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.065, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNNM010000104.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.087, whole genome shotgun sequence	227..1440	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNNM010000062.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.063, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNNM010000105.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.089, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNNM010000076.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.085, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNNM010000109.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.094, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul2	100	816/816	ABNNNM010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.062, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNM010000067.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.071, whole genome shotgun sequence	562..1353	Sulfamethoxazole	AJ459418	sul2	100	815/816	ABNNNM010000101.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.078, whole genome shotgun sequence	1..815	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNNM010000110.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.095, whole genome shotgun sequence	41..856	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNM010000113.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.101, whole genome shotgun sequence	66..857	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNNM010000048.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.048, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNNM010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.066, whole genome shotgun sequence	2249..3454	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNNM010000097.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.068, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNNM010000076.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.085, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNNM010000109.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.guided.094, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNNM010000058.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.058, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNNM010000034.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.034, whole genome shotgun sequence	22593..22919		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNNM010000047.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.047, whole genome shotgun sequence	2785..3414		enterobacteriales	IncN	100	512 / 514	ABNNNM010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017509 SAMN37691015-rid19633913.denovo.102, whole genome shotgun sequence	470..981																																		avrA	ABNNNM010000002.1	93864..94733	99.885	870	0						
GCA_032495905.1_PDT001920127.1_genomic.fna	Salmonella_enterica	0.5187	271.558 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aph(3')-Ia,aadA22,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaLAP-2,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul2,sul2,sul3,tet(B),tet(A),tet(B),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNNL010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.001, whole genome shotgun sequence	569734..570171	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNNL010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.046, whole genome shotgun sequence	555..1370	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABNNNL010000048.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.051, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNL010000048.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.051, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNL010000052.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.059, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNL010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.073, whole genome shotgun sequence	910..1701	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNNL010000084.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.047, whole genome shotgun sequence	1487..1924	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNNL010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.050, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNL010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.050, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNL010000090.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.061, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNNNL010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.071, whole genome shotgun sequence	762..1577	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EU722351	aadA22	100	792/792	ABNNNL010000097.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.078, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNNL010000041.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.042, whole genome shotgun sequence	2300..3175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNL010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.067, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNL010000066.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.085, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNNL010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.054, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNL010000093.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.066, whole genome shotgun sequence	2096..2953	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNL010000101.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.083, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNNNL010000054.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.064, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNL010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.073, whole genome shotgun sequence	1833..2654	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNL010000092.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.063, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNL010000097.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.078, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNNL010000040.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.041, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNNL010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.058, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNNL010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.053, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNNL010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.052, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNNL010000063.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.077, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNNL010000100.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.081, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNNNL010000036.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.036, whole genome shotgun sequence	12281..13072	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNNL010000048.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.051, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNNL010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.050, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNL010000094.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.068, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNNL010000035.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.035, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNNL010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.057, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNNNL010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.040, whole genome shotgun sequence	5245..6450	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNNL010000088.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.055, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNNL010000063.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.077, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNNL010000100.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.guided.081, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNNL010000043.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.044, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNNL010000015.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.015, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNNL010000015.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.015, whole genome shotgun sequence	92076..92705		enterobacteriales	IncN	100	513 / 514	ABNNNL010000069.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017517 SAMN37690996-rid19633893.denovo.088, whole genome shotgun sequence	470..982																																		avrA	ABNNNL010000002.1	434684..435553	99.885	870	0						
GCA_032495925.1_PDT001920126.1_genomic.fna	Salmonella_enterica	0.5186	254.688 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	18	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aph(3')-Ia,aadA22,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaLAP-2,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul2,sul2,sul3,tet(B),tet(B),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNNP010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.01, whole genome shotgun sequence	581225..581662	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNNP010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.48, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNNNP010000048.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.52, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNP010000048.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.52, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNP010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.58, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNP010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.69, whole genome shotgun sequence	894..1685	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNNP010000079.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.29, whole genome shotgun sequence	31468..31905	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNNP010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.51, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNP010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.51, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNP010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.59, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNNNP010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.67, whole genome shotgun sequence	762..1577	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EU722351	aadA22	100	792/792	ABNNNP010000092.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.71, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNNP010000042.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.45, whole genome shotgun sequence	2300..3175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNP010000053.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.64, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNP010000060.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.75, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNNP010000084.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.55, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNP010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.63, whole genome shotgun sequence	2096..2953	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNP010000093.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.74, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNNNP010000052.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.61, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNP010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.69, whole genome shotgun sequence	1817..2638	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNP010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.60, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNP010000092.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.71, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABNNNP010000041.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.44, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNNP010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.57, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNNP010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.54, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNNP010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.53, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNNP010000058.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.72, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNNP010000094.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.78, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNNNP010000035.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.38, whole genome shotgun sequence	12282..13073	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNNP010000048.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.52, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNNP010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.51, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNP010000090.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.65, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNNP010000034.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.36, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNNP010000088.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.62, whole genome shotgun sequence	1663..2868	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNNNP010000058.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.72, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNNP010000094.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.guided.78, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNNP010000043.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.46, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNNP010000020.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.20, whole genome shotgun sequence	43605..43931		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNNP010000020.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.20, whole genome shotgun sequence	61915..62544		enterobacteriales	IncN	100	513 / 514	ABNNNP010000064.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017518 SAMN37691000-rid19633883.denovo.80, whole genome shotgun sequence	470..982																																		avrA	ABNNNP010000002.1	434666..435535	99.885	870	0						
GCA_032495945.1_PDT001920125.1_genomic.fna	Salmonella_enterica	0.5189	223.58 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aph(3')-Ia,aadA22,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaTEM-1B,blaLAP-2,mph(A),lnu(F),lnu(F),mph(A),floR,floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul2,sul2,sul2,sul3,tet(B),tet(A),tet(A),tet(B),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNNO010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.01, whole genome shotgun sequence	379582..380019	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNNO010000044.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.47, whole genome shotgun sequence	555..1370	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNNNO010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.50, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNO010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.50, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNO010000050.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.61, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNNNO010000055.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.69, whole genome shotgun sequence	945..1736	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNNNO010000074.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.35, whole genome shotgun sequence	15731..16168	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNNO010000077.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.48, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNNNO010000077.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.48, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNNNO010000078.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.49, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNNO010000078.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.49, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNNNO010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.62, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNNNO010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.68, whole genome shotgun sequence	762..1577	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin	EU722351	aadA22	100	792/792	ABNNNO010000088.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.73, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNNNO010000038.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.41, whole genome shotgun sequence	4152..5027	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNNNO010000053.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.65, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNNNO010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.74, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNNNO010000080.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.53, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNNNO010000090.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.76, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNNNO010000092.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.80, whole genome shotgun sequence	11..868	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	mph(A)	100	906/906	ABNNNO010000051.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.63, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNNNO010000055.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.69, whole genome shotgun sequence	1868..2689	Lincomycin	EU118119	lnu(F)	100	822/822	ABNNNO010000088.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.73, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	mph(A)	100	906/906	ABNNNO010000091.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.78, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.11	1214/1215	ABNNNO010000041.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.44, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.02	1214/1215	ABNNNO010000083.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.59, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNNNO010000084.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.60, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNNNO010000046.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.52, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNNNO010000079.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.51, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNNNO010000058.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.72, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNNNO010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.75, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNNNO010000035.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.38, whole genome shotgun sequence	12281..13072	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNNO010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.50, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNNO010000077.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.48, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNNO010000078.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.49, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNNNO010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.66, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNNO010000034.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.34, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNNNO010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.57, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNNO010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.55, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNNNO010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.58, whole genome shotgun sequence	2174..3379	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNNNO010000058.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.72, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNNNO010000089.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.guided.75, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																						enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNNNO010000042.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.45, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNNNO010000014.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.14, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNNO010000014.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.14, whole genome shotgun sequence	92076..92705		enterobacteriales	IncN	100	513 / 514	ABNNNO010000062.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017532 SAMN37691009-rid19633873.denovo.81, whole genome shotgun sequence	470..982																																		avrA	ABNNNO010000002.1	540381..541250	99.885	870	0						
GCA_032498005.1_PDT001917715.1_genomic.fna	Salmonella_enterica	0.5212	273.321 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNNPO010000001.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325508 SAMN37692798-rid19631503.denovo.01, whole genome shotgun sequence	537520..537957	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNNPO010000031.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325508 SAMN37692798-rid19631503.guided.24, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNNPO010000022.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325508 SAMN37692798-rid19631503.denovo.25, whole genome shotgun sequence	239..369																																																						avrA	ABNNPO010000002.1	409319..410188	99.425	870	0						
GCA_032498025.1_PDT001917665.1_genomic.fna	Salmonella_enterica	0.5221	161.374 KB	9	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	Col(pHAD28),Col440I,ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNNPT010000005.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325510 SAMN37692800-rid19630153.denovo.05, whole genome shotgun sequence	211425..211862	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNNPT010000071.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325510 SAMN37692800-rid19630153.guided.48, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNNPT010000053.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325510 SAMN37692800-rid19630153.denovo.56, whole genome shotgun sequence	2216..2346	enterobacteriales	Col440I	91.74	109 / 114	ABNNPT010000053.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325510 SAMN37692800-rid19630153.denovo.56, whole genome shotgun sequence	4505..4613		enterobacteriales	ColpVC	98.96	193 / 193	ABNNPT010000062.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325510 SAMN37692800-rid19630153.denovo.65, whole genome shotgun sequence	519..711		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNNPT010000032.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325510 SAMN37692800-rid19630153.denovo.32, whole genome shotgun sequence	1293..1434																																		avrA	ABNNPT010000006.1	145444..146313	99.425	870	0						
GCA_032498105.1_PDT001917728.1_genomic.fna	Salmonella_enterica	0.5201	314.797 KB	7	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNPC010000001.1 Salmonella enterica strain PNUSAS388234 SAMN37693750-rid19631633.denovo.01, whole genome shotgun sequence	239428..239865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNNPC010000038.1 Salmonella enterica strain PNUSAS388234 SAMN37693750-rid19631633.guided.25, whole genome shotgun sequence	5821..6258	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNNPC010000005.1 Salmonella enterica strain PNUSAS388234 SAMN37693750-rid19631633.denovo.05, whole genome shotgun sequence	37277..37919	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNNPC010000005.1 Salmonella enterica strain PNUSAS388234 SAMN37693750-rid19631633.denovo.05, whole genome shotgun sequence	10978..11204																																																											
GCA_032498185.1_PDT001917725.1_genomic.fna	Salmonella_enterica	0.5196	323.993 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_105	3631	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI2,IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_105	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNPF010000001.1 Salmonella enterica strain PNUSAS389293 SAMN37693751-rid19631603.denovo.01, whole genome shotgun sequence	591761..592198	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNPF010000044.1 Salmonella enterica strain PNUSAS389293 SAMN37693751-rid19631603.guided.18, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNNPF010000015.1 Salmonella enterica strain PNUSAS389293 SAMN37693751-rid19631603.denovo.15, whole genome shotgun sequence	48411..49053	enterobacteriales	IncFII(S)	100	262 / 262	ABNNPF010000015.1 Salmonella enterica strain PNUSAS389293 SAMN37693751-rid19631603.denovo.15, whole genome shotgun sequence	64138..64399		enterobacteriales	IncI2	100	324 / 324	ABNNPF010000021.1 Salmonella enterica strain PNUSAS389293 SAMN37693751-rid19631603.denovo.23, whole genome shotgun sequence	24591..24914		enterobacteriales	IncX4	100	374 / 374	ABNNPF010000026.1 Salmonella enterica strain PNUSAS389293 SAMN37693751-rid19631603.denovo.28, whole genome shotgun sequence	10640..11013																																		avrA	ABNNPF010000005.1	145779..146648	99.885	870	0						
GCA_032498225.1_PDT001917720.1_genomic.fna	Salmonella_enterica	0.5216	193.524 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	10	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNPK010000002.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.denovo.02, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNPK010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.denovo.40, whole genome shotgun sequence	12827..13618	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNPK010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.denovo.40, whole genome shotgun sequence	12827..13618	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNNPK010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.denovo.48, whole genome shotgun sequence	1053..2078	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNPK010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.denovo.48, whole genome shotgun sequence	48..824	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNNPK010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.guided.36, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNPK010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.guided.45, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNPK010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.guided.45, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNNPK010000073.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.guided.55, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNPK010000073.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.guided.55, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNNPK010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.denovo.64, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNNPK010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.guided.65, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNNPK010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.denovo.62, whole genome shotgun sequence	320..736	Fosfomycin	AB522970	fosA3	100	417/417	ABNNPK010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.guided.61, whole genome shotgun sequence	361..777	Fosfomycin	AB522970	floR	98.19	1214/1215	ABNNPK010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.denovo.50, whole genome shotgun sequence	2841..4054	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNNPK010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.guided.51, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNNPK010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.denovo.40, whole genome shotgun sequence	11483..12322	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNPK010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.guided.45, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNNPK010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.denovo.38, whole genome shotgun sequence	843..2042	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNPK010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.guided.44, whole genome shotgun sequence	874..2073	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNPK010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.denovo.46, whole genome shotgun sequence	3121..3594	Trimethoprim	AF393510	dfrA14	100	474/474	ABNNPK010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.guided.52, whole genome shotgun sequence	2895..3368	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNPK010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325517 SAMN37692956-rid19631553.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABNNPK010000003.1	95321..96190	99.655	870	0						
GCA_032498245.1_PDT001917718.1_genomic.fna	Salmonella_enterica	0.52	281.667 KB	5	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNPL010000001.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12325514 SAMN37692794-rid19631533.denovo.01, whole genome shotgun sequence	493338..493775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNPL010000038.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12325514 SAMN37692794-rid19631533.guided.26, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNPL010000003.1	128000..128869	98.966	870	0						
GCA_032498365.1_PDT001917711.1_genomic.fna	Salmonella_enterica	0.5204	328.151 KB	6	aroC_180,dnaN_161,hemD_132,hisD_21,purE_12,sucA_13,thrA_4	532	16:d:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_180	dnaN	100	100	dnaN_161	hemD	100	100	hemD_132	hisD	100	100	hisD_21	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	16	d	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Barranquilla		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNPR010000007.1 Salmonella enterica subsp. enterica serovar Barranquilla strain FSIS12325511 SAMN37692801-rid19631463.denovo.07, whole genome shotgun sequence	90487..90924	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNPR010000045.1 Salmonella enterica subsp. enterica serovar Barranquilla strain FSIS12325511 SAMN37692801-rid19631463.guided.28, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.74	114 / 114	ABNNPR010000032.1 Salmonella enterica subsp. enterica serovar Barranquilla strain FSIS12325511 SAMN37692801-rid19631463.denovo.35, whole genome shotgun sequence	332..445																																																						avrA	ABNNPR010000001.1	140328..141197	99.54	870	0						
GCA_032498385.1_PDT001917710.1_genomic.fna	Salmonella_enterica	0.5204	367.463 KB	5	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),IncI2(Delta)	aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNPS010000001.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325509 SAMN37692799-rid19631453.denovo.01, whole genome shotgun sequence	132691..133128	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNPS010000023.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325509 SAMN37692799-rid19631453.denovo.26, whole genome shotgun sequence	6775..7611	Streptomycin	M28829	aph(3'')-Ib	100	780/804	ABNNPS010000023.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325509 SAMN37692799-rid19631453.denovo.26, whole genome shotgun sequence	7611..8390	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNNPS010000027.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325509 SAMN37692799-rid19631453.guided.23, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNPS010000030.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325509 SAMN37692799-rid19631453.guided.27, whole genome shotgun sequence	2060..2896	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNPS010000030.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325509 SAMN37692799-rid19631453.guided.27, whole genome shotgun sequence	1257..2060	Streptomycin	AF321551	sul2	100	816/816	ABNNPS010000023.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325509 SAMN37692799-rid19631453.denovo.26, whole genome shotgun sequence	85..900	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNNPS010000030.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325509 SAMN37692799-rid19631453.guided.27, whole genome shotgun sequence	381..1196	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNNPS010000023.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325509 SAMN37692799-rid19631453.denovo.26, whole genome shotgun sequence	4240..5514	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNNPS010000031.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325509 SAMN37692799-rid19631453.guided.28, whole genome shotgun sequence	789..2063	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNNPS010000023.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325509 SAMN37692799-rid19631453.denovo.26, whole genome shotgun sequence	1427..1557	enterobacteriales	IncI2(Delta)	100	316 / 316	ABNNPS010000018.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325509 SAMN37692799-rid19631453.denovo.18, whole genome shotgun sequence	28185..28500																																																											
GCA_032498445.1_PDT001917597.1_genomic.fna	Salmonella_enterica	0.5204	213.646 KB	9	aroC_92,dnaN_125,hemD_78,hisD_128,purE_138,sucA_9,thrA_141	463	3,10:e,h:l,w	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_92	dnaN	100	100	dnaN_125	hemD	100	100	hemD_78	hisD	100	100	hisD_128	purE	100	100	purE_138	sucA	100	100	sucA_9	thrA	100	100	thrA_141	3,10	e,h	l,w	Salmonella enterica subspecies enterica (subspecies I)	Meleagridis		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNNPZ010000002.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12325507 SAMN37692773-rid19630683.denovo.02, whole genome shotgun sequence	179029..179466	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNNPZ010000040.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12325507 SAMN37692773-rid19630683.guided.35, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNNPZ010000004.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12325507 SAMN37692773-rid19630683.denovo.04, whole genome shotgun sequence	158253..158675	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNNPZ010000039.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12325507 SAMN37692773-rid19630683.guided.34, whole genome shotgun sequence	21554..21976	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNPZ010000003.1	140557..141426	98.851	870	0						
GCA_032498465.1_PDT001917599.1_genomic.fna	Salmonella_enterica	0.5217	371.708 KB	5	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNPX010000001.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325506 SAMN37692772-rid19630693.denovo.01, whole genome shotgun sequence	133976..134413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNPX010000029.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325506 SAMN37692772-rid19630693.guided.24, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032498505.1_PDT001917595.1_genomic.fna	Salmonella_enterica	0.5214	193.524 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,floR,floR,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNQC010000002.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325504 SAMN37692706-rid19629783.denovo.02, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNNQC010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325504 SAMN37692706-rid19629783.denovo.50, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNQC010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325504 SAMN37692706-rid19629783.denovo.50, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNNQC010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325504 SAMN37692706-rid19629783.guided.31, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNNQC010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325504 SAMN37692706-rid19629783.guided.49, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNQC010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325504 SAMN37692706-rid19629783.guided.49, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNNQC010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325504 SAMN37692706-rid19629783.denovo.46, whole genome shotgun sequence	2787..4000	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNNQC010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325504 SAMN37692706-rid19629783.guided.47, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	floR	98.85	1135/1215	ABNNQC010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325504 SAMN37692706-rid19629783.guided.57, whole genome shotgun sequence	1269..2403	Chloramphenicol, Florfenicol	AF118107	floR	98.84	1121/1215	ABNNQC010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325504 SAMN37692706-rid19629783.guided.58, whole genome shotgun sequence	1269..2389	Chloramphenicol, Florfenicol	AF118107	dfrA14	100	474/474	ABNNQC010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325504 SAMN37692706-rid19629783.denovo.56, whole genome shotgun sequence	86..559	Trimethoprim	AF393510	dfrA14	100	474/474	ABNNQC010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325504 SAMN37692706-rid19629783.guided.55, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNQC010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325504 SAMN37692706-rid19629783.denovo.34, whole genome shotgun sequence	9109..9668																																																						avrA	ABNNQC010000003.1	95072..95941	99.655	870	0						
GCA_032498515.1_PDT001917594.1_genomic.fna	Salmonella_enterica	0.5226	307.119 KB	6	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNQB010000001.1 Salmonella enterica subsp. enterica serovar London strain FSIS12325502 SAMN37692571-rid19629773.denovo.01, whole genome shotgun sequence	375119..375556	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNQB010000031.1 Salmonella enterica subsp. enterica serovar London strain FSIS12325502 SAMN37692571-rid19629773.guided.23, whole genome shotgun sequence	40583..41020	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNQB010000015.1	36960..37829	99.425	870	0						
GCA_032498545.1_PDT001917596.1_genomic.fna	Salmonella_enterica	0.5213	184.09 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNQA010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.denovo.01, whole genome shotgun sequence	461242..461679	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNQA010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.denovo.29, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNQA010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.denovo.29, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNNQA010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.denovo.56, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNQA010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.denovo.56, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNNQA010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNQA010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.guided.30, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNQA010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.guided.30, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNNQA010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.guided.54, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNQA010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.guided.54, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNNQA010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.denovo.50, whole genome shotgun sequence	3786..4999	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNNQA010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.guided.52, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNNQA010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.denovo.29, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNQA010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.guided.30, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNNQA010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.denovo.29, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNQA010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.guided.30, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNQA010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325505 SAMN37692707-rid19629793.denovo.35, whole genome shotgun sequence	9109..9668																																																						avrA	ABNNQA010000005.1	149828..150697	99.655	870	0						
GCA_032498565.1_PDT001917593.1_genomic.fna	Salmonella_enterica	0.5212	183.362 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNQD010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNQD010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.denovo.40, whole genome shotgun sequence	11982..12773	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNQD010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.denovo.40, whole genome shotgun sequence	11982..12773	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNNQD010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.denovo.48, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNQD010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.denovo.48, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNNQD010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.guided.39, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNQD010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.guided.39, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNNQD010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.guided.45, whole genome shotgun sequence	7906..8343	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNNQD010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.guided.53, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNQD010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.guided.53, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNNQD010000047.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.denovo.56, whole genome shotgun sequence	911..1786	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNNQD010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.guided.55, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNNQD010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.denovo.50, whole genome shotgun sequence	2809..4022	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNNQD010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.guided.49, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNNQD010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.denovo.40, whole genome shotgun sequence	10638..11477	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNQD010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.guided.39, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNNQD010000034.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.denovo.36, whole genome shotgun sequence	1819..3018	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNQD010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.guided.41, whole genome shotgun sequence	1850..3049	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNQD010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.denovo.46, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNNQD010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.guided.51, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNQD010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325500 SAMN37692575-rid19629763.denovo.35, whole genome shotgun sequence	9109..9668																																																						avrA	ABNNQD010000002.1	39349..40218	99.655	870	0						
GCA_032498585.1_PDT001917592.1_genomic.fna	Salmonella_enterica	0.5229	106.971 KB	12	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNQE010000001.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325498 SAMN37692573-rid19630673.denovo.01, whole genome shotgun sequence	58815..59252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNQE010000073.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325498 SAMN37692573-rid19630673.guided.55, whole genome shotgun sequence	12101..12538	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNNQE010000062.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325498 SAMN37692573-rid19630673.denovo.65, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABNNQE010000058.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325498 SAMN37692573-rid19630673.denovo.61, whole genome shotgun sequence	3175..3285																																																avrA	ABNNQE010000003.1	153069..153938	99.425	870	0						
GCA_032498605.1_PDT001917590.1_genomic.fna	Salmonella_enterica	0.5224	214.056 KB	7	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNQF010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325503 SAMN37692572-rid19629743.denovo.01, whole genome shotgun sequence	493604..494041	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNQF010000040.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325503 SAMN37692572-rid19629743.guided.31, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032498625.1_PDT001917589.1_genomic.fna	Salmonella_enterica	0.5201	94.559 KB	19	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNNQH010000022.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12325496 SAMN37692569-rid19630663.denovo.022, whole genome shotgun sequence	56751..57188	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNNQH010000107.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12325496 SAMN37692569-rid19630663.guided.037, whole genome shotgun sequence	31721..32158	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNNQH010000077.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12325496 SAMN37692569-rid19630663.denovo.080, whole genome shotgun sequence	557..687																																																						avrA	ABNNQH010000046.1	39350..40219	99.54	870	0						
GCA_032498645.1_PDT001917591.1_genomic.fna	Salmonella_enterica	0.5219	119.337 KB	12	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNNQG010000004.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325499 SAMN37692574-rid19629753.denovo.04, whole genome shotgun sequence	230359..230796	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNNQG010000073.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325499 SAMN37692574-rid19629753.guided.37, whole genome shotgun sequence	30225..30662	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNQG010000013.1	104073..104942	99.54	870	0						
GCA_032498665.1_PDT001917588.1_genomic.fna	Salmonella_enterica	0.5226	92.174 KB	17	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	-:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNNQI010000017.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325497 SAMN37692565-rid19629733.denovo.17, whole genome shotgun sequence	76130..76567	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNNQI010000096.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325497 SAMN37692565-rid19629733.guided.54, whole genome shotgun sequence	16453..16890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNNQI010000086.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325497 SAMN37692565-rid19629733.denovo.89, whole genome shotgun sequence	1319..1449	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNNQI010000087.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325497 SAMN37692565-rid19629733.denovo.90, whole genome shotgun sequence	1077..1207		enterobacteriales	Col440I	91.74	109 / 114	ABNNQI010000080.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325497 SAMN37692565-rid19629733.denovo.83, whole genome shotgun sequence	2246..2354		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNNQI010000078.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325497 SAMN37692565-rid19629733.denovo.81, whole genome shotgun sequence	252..393																																		avrA	ABNNQI010000012.1	119785..120654	99.425	870	0						
GCA_032498685.1_PDT001917587.1_genomic.fna	Salmonella_enterica	0.5227	225.482 KB	7	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNQJ010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325501 SAMN37692570-rid19630653.denovo.01, whole genome shotgun sequence	483995..484432	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNQJ010000045.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325501 SAMN37692570-rid19630653.guided.34, whole genome shotgun sequence	12447..12884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNNQJ010000037.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325501 SAMN37692570-rid19630653.denovo.41, whole genome shotgun sequence	3981..4111																																																																	
GCA_032498695.1_PDT001917586.1_genomic.fna	Salmonella_enterica	0.5217	183.334 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNQL010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.denovo.01, whole genome shotgun sequence	460178..460615	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNQL010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.denovo.35, whole genome shotgun sequence	22945..23736	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNQL010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.denovo.35, whole genome shotgun sequence	22945..23736	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNNQL010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.denovo.57, whole genome shotgun sequence	1052..2077	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNQL010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.denovo.57, whole genome shotgun sequence	47..823	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNNQL010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.guided.39, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNQL010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.guided.39, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNNQL010000073.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.guided.40, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNNQL010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.guided.65, whole genome shotgun sequence	1093..2118	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNQL010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.guided.65, whole genome shotgun sequence	88..864	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNNQL010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.denovo.67, whole genome shotgun sequence	954..1829	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNNQL010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.guided.66, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNNQL010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.denovo.59, whole genome shotgun sequence	2845..4058	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNNQL010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.guided.60, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNNQL010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.denovo.35, whole genome shotgun sequence	21601..22440	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNQL010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.guided.39, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNNQL010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.denovo.35, whole genome shotgun sequence	7885..9084	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNQL010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.guided.39, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNQL010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.denovo.54, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNNQL010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.guided.61, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNQL010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325494 SAMN37692562-rid19629723.denovo.46, whole genome shotgun sequence	14637..15196																																																						avrA	ABNNQL010000003.1	149828..150697	99.655	870	0						
GCA_032498725.1_PDT001917585.1_genomic.fna	Salmonella_enterica	0.5213	91.032 KB	18	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNQK010000026.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325495 SAMN37692563-rid19629713.denovo.026, whole genome shotgun sequence	14073..14510	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNQK010000117.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325495 SAMN37692563-rid19629713.guided.080, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNQK010000080.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325495 SAMN37692563-rid19629713.denovo.083, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNNQK010000081.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325495 SAMN37692563-rid19629713.denovo.084, whole genome shotgun sequence	3400..3661		enterobacteriales	IncX1	98.93	374 / 374	ABNNQK010000041.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325495 SAMN37692563-rid19629713.denovo.041, whole genome shotgun sequence	9486..9859																																									avrA	ABNNQK010000001.1	149384..150253	99.54	870	0						
GCA_032498765.1_PDT001917582.1_genomic.fna	Salmonella_enterica	0.5218	225.555 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNQN010000001.1 Salmonella enterica strain 23WA08CB03-S1 SAMN37692538-rid19630643.denovo.01, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNQN010000043.1 Salmonella enterica strain 23WA08CB03-S1 SAMN37692538-rid19630643.guided.28, whole genome shotgun sequence	22641..23078	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNNQN010000018.1 Salmonella enterica strain 23WA08CB03-S1 SAMN37692538-rid19630643.denovo.18, whole genome shotgun sequence	44751..45393	enterobacteriales	IncFII(S)	100	262 / 262	ABNNQN010000018.1 Salmonella enterica strain 23WA08CB03-S1 SAMN37692538-rid19630643.denovo.18, whole genome shotgun sequence	29405..29666																																																avrA	ABNNQN010000004.1	175018..175886	100	869	0						
GCA_032498845.1_PDT001917578.1_genomic.fna	Salmonella_enterica	0.5213	194.282 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNQS010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.denovo.01, whole genome shotgun sequence	175100..175537	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNQS010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.denovo.35, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNQS010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.denovo.35, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNNQS010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.denovo.47, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNQS010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.denovo.47, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNNQS010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.denovo.63, whole genome shotgun sequence	93..908	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	X62115	aac(6')-Iaa	97.49	438/438	ABNNQS010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.guided.18, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNQS010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.guided.41, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNQS010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.guided.41, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNNQS010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.guided.45, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNQS010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.guided.45, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNNQS010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.guided.60, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	X62115	blaCTX-M-65	100	876/876	ABNNQS010000057.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.denovo.64, whole genome shotgun sequence	93..968	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNNQS010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.guided.61, whole genome shotgun sequence	92..967	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNNQS010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.denovo.35, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNQS010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.guided.41, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNNQS010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.denovo.35, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNQS010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.guided.41, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNQS010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325492 SAMN37692257-rid19629663.denovo.40, whole genome shotgun sequence	9109..9668																																																						avrA	ABNNQS010000002.1	94091..94960	99.655	870	0						
GCA_032498865.1_PDT001917576.1_genomic.fna	Salmonella_enterica	0.5208	124.884 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNQT010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325491 SAMN37692256-rid19629653.denovo.01, whole genome shotgun sequence	248269..248706	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNNQT010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325491 SAMN37692256-rid19629653.denovo.65, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNQT010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325491 SAMN37692256-rid19629653.denovo.65, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNNQT010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325491 SAMN37692256-rid19629653.guided.50, whole genome shotgun sequence	11878..12315	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNNQT010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325491 SAMN37692256-rid19629653.guided.64, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNQT010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325491 SAMN37692256-rid19629653.guided.64, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNNQT010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325491 SAMN37692256-rid19629653.denovo.58, whole genome shotgun sequence	1591..2804	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNNQT010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325491 SAMN37692256-rid19629653.guided.73, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	dfrA14	99.79	474/474	ABNNQT010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325491 SAMN37692256-rid19629653.denovo.57, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	99.79	474/474	ABNNQT010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325491 SAMN37692256-rid19629653.guided.61, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNQT010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325491 SAMN37692256-rid19629653.denovo.42, whole genome shotgun sequence	22248..22807																																																						avrA	ABNNQT010000026.1	39430..40299	99.655	870	0						
GCA_032498885.1_PDT001917575.1_genomic.fna	Salmonella_enterica	0.5227	263.61 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNQU010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325488 SAMN37692253-rid19629643.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNQU010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325488 SAMN37692253-rid19629643.guided.25, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNQU010000002.1	149923..150792	99.655	870	0						
GCA_032498905.1_PDT001917577.1_genomic.fna	Salmonella_enterica	0.5227	550.367 KB	3	aroC_81,dnaN_283,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	909	7:y:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_283	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,2	Salmonella enterica subspecies enterica (subspecies I)	Richmond		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNNQR010000001.1 Salmonella enterica subsp. enterica serovar Richmond strain FSIS12325493 SAMN37692258-rid19630623.denovo.01, whole genome shotgun sequence	845341..845778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNNQR010000026.1 Salmonella enterica subsp. enterica serovar Richmond strain FSIS12325493 SAMN37692258-rid19630623.guided.18, whole genome shotgun sequence	30029..30466	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNQR010000002.1	515457..516326	99.31	870	0						
GCA_032498925.1_PDT001917573.1_genomic.fna	Salmonella_enterica	0.5215	245.651 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNQW010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325274 SAMN37692251-rid19629623.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNQW010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325274 SAMN37692251-rid19629623.denovo.15, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNQW010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325274 SAMN37692251-rid19629623.denovo.15, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNNQW010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325274 SAMN37692251-rid19629623.guided.33, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNQW010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325274 SAMN37692251-rid19629623.guided.34, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNQW010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325274 SAMN37692251-rid19629623.guided.34, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNNQW010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325274 SAMN37692251-rid19629623.denovo.15, whole genome shotgun sequence	103623..104498	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNNQW010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325274 SAMN37692251-rid19629623.guided.42, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNNQW010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325274 SAMN37692251-rid19629623.denovo.45, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABNNQW010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325274 SAMN37692251-rid19629623.guided.47, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABNNQW010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325274 SAMN37692251-rid19629623.denovo.15, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNQW010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325274 SAMN37692251-rid19629623.guided.34, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNNQW010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325274 SAMN37692251-rid19629623.denovo.15, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNQW010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325274 SAMN37692251-rid19629623.guided.44, whole genome shotgun sequence	906..2105	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNQW010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325274 SAMN37692251-rid19629623.denovo.30, whole genome shotgun sequence	9109..9668																																																						avrA	ABNNQW010000004.1	149763..150632	99.655	870	0						
GCA_032498945.1_PDT001917574.1_genomic.fna	Salmonella_enterica	0.5199	237.195 KB	7	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNQV010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325489 SAMN37692254-rid19629633.denovo.12, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNQV010000067.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325489 SAMN37692254-rid19629633.guided.49, whole genome shotgun sequence	2777..3214	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	ABNNQV010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325489 SAMN37692254-rid19629633.denovo.52, whole genome shotgun sequence	1831..2512	enterobacteriales	IncFII	96.56	262 / 261	ABNNQV010000030.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325489 SAMN37692254-rid19629633.denovo.31, whole genome shotgun sequence	36476..36737		enterobacteriales	IncX1	100	373 / 373	ABNNQV010000038.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325489 SAMN37692254-rid19629633.denovo.39, whole genome shotgun sequence	2153..2525																																									avrA	ABNNQV010000027.1	39484..40353	99.655	870	0						
GCA_032498965.1_PDT001917572.1_genomic.fna	Salmonella_enterica	0.5215	226.915 KB	6	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNQX010000001.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325487 SAMN37692252-rid19630613.denovo.01, whole genome shotgun sequence	346600..347037	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNQX010000086.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325487 SAMN37692252-rid19630613.guided.32, whole genome shotgun sequence	3468..3905	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNNQX010000042.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325487 SAMN37692252-rid19630613.denovo.45, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABNNQX010000040.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325487 SAMN37692252-rid19630613.denovo.43, whole genome shotgun sequence	3175..3285																																																avrA	ABNNQX010000002.1	159561..160430	99.425	870	0						
GCA_032498985.1_PDT001917570.1_genomic.fna	Salmonella_enterica	0.522	346.631 KB	6	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNNQZ010000004.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325189 SAMN37692244-rid19629603.denovo.04, whole genome shotgun sequence	252456..252893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNQZ010000028.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325189 SAMN37692244-rid19629603.denovo.31, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNNQZ010000028.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325189 SAMN37692244-rid19629603.denovo.31, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNNQZ010000028.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325189 SAMN37692244-rid19629603.denovo.31, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNNQZ010000028.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325189 SAMN37692244-rid19629603.denovo.31, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNNQZ010000028.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325189 SAMN37692244-rid19629603.denovo.31, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNNQZ010000040.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325189 SAMN37692244-rid19629603.guided.22, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNQZ010000043.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325189 SAMN37692244-rid19629603.guided.33, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNNQZ010000043.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325189 SAMN37692244-rid19629603.guided.33, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNNQZ010000043.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325189 SAMN37692244-rid19629603.guided.33, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNNQZ010000043.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325189 SAMN37692244-rid19629603.guided.33, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNNQZ010000043.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325189 SAMN37692244-rid19629603.guided.33, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNNQZ010000030.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325189 SAMN37692244-rid19629603.denovo.35, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNQZ010000044.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325189 SAMN37692244-rid19629603.guided.34, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNNQZ010000019.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325189 SAMN37692244-rid19629603.denovo.19, whole genome shotgun sequence	23037..23178																																																						avrA	ABNNQZ010000012.1	39546..40415	99.655	870	0						
GCA_032499025.1_PDT001917569.1_genomic.fna	Salmonella_enterica	0.5209	264.555 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNRA010000003.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12324925 SAMN37692230-rid19630603.denovo.03, whole genome shotgun sequence	159429..159866	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNRA010000022.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12324925 SAMN37692230-rid19630603.denovo.23, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNRA010000022.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12324925 SAMN37692230-rid19630603.denovo.23, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNNRA010000036.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12324925 SAMN37692230-rid19630603.guided.22, whole genome shotgun sequence	31773..32609	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNRA010000036.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12324925 SAMN37692230-rid19630603.guided.22, whole genome shotgun sequence	30970..31773	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNNRA010000039.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12324925 SAMN37692230-rid19630603.guided.30, whole genome shotgun sequence	4053..4490	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNNRA010000022.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12324925 SAMN37692230-rid19630603.denovo.23, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNNRA010000036.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12324925 SAMN37692230-rid19630603.guided.22, whole genome shotgun sequence	608..1753	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNNRA010000022.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12324925 SAMN37692230-rid19630603.denovo.23, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNNRA010000036.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12324925 SAMN37692230-rid19630603.guided.22, whole genome shotgun sequence	30094..30909	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNNRA010000022.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12324925 SAMN37692230-rid19630603.denovo.23, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNNRA010000036.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12324925 SAMN37692230-rid19630603.guided.22, whole genome shotgun sequence	33870..35144	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNNRA010000016.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12324925 SAMN37692230-rid19630603.denovo.16, whole genome shotgun sequence	79440..79856	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNNRA010000016.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12324925 SAMN37692230-rid19630603.denovo.16, whole genome shotgun sequence	16860..17119		enterobacteriales	IncX1	98.66	374 / 374	ABNNRA010000016.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12324925 SAMN37692230-rid19630603.denovo.16, whole genome shotgun sequence	52714..53087																																									avrA	ABNNRA010000001.1	504642..505510	99.54	870	0						
GCA_032499045.1_PDT001917568.1_genomic.fna	Salmonella_enterica	0.5193	102.155 KB	17	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNRB010000017.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12324939 SAMN37692243-rid19629593.denovo.017, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNRB010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12324939 SAMN37692243-rid19629593.denovo.072, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNRB010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12324939 SAMN37692243-rid19629593.denovo.072, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNNRB010000115.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12324939 SAMN37692243-rid19629593.guided.056, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNRB010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12324939 SAMN37692243-rid19629593.guided.075, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNRB010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12324939 SAMN37692243-rid19629593.guided.075, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNNRB010000078.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12324939 SAMN37692243-rid19629593.denovo.081, whole genome shotgun sequence	2423..3628	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNRB010000117.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12324939 SAMN37692243-rid19629593.guided.084, whole genome shotgun sequence	2228..3433	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNNRB010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12324939 SAMN37692243-rid19629593.denovo.083, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNNRB010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12324939 SAMN37692243-rid19629593.denovo.072, whole genome shotgun sequence	1831..2092		enterobacteriales	IncFII	96.95	262 / 261	ABNNRB010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12324939 SAMN37692243-rid19629593.guided.075, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNNRB010000056.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12324939 SAMN37692243-rid19629593.denovo.058, whole genome shotgun sequence	7805..7946		enterobacteriales	IncX1	100	373 / 373	ABNNRB010000069.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12324939 SAMN37692243-rid19629593.denovo.071, whole genome shotgun sequence	2698..3070																											avrA	ABNNRB010000042.1	39590..40459	99.655	870	0						
GCA_032499065.1_PDT001917567.1_genomic.fna	Salmonella_enterica	0.521	430.195 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNRC010000001.1 Salmonella enterica strain PNUSAS389260 SAMN37692120-rid19630593.denovo.01, whole genome shotgun sequence	560087..560524	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNRC010000029.1 Salmonella enterica strain PNUSAS389260 SAMN37692120-rid19630593.guided.14, whole genome shotgun sequence	26642..27079	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNRC010000010.1	120129..120997	99.195	870	0						
GCA_032499085.1_PDT001917566.1_genomic.fna	Salmonella_enterica	0.5207	660.46 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNRD010000001.1 Salmonella enterica strain PNUSAS389259 SAMN37692105-rid19629583.denovo.01, whole genome shotgun sequence	398897..399334	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNRD010000022.1 Salmonella enterica strain PNUSAS389259 SAMN37692105-rid19629583.guided.13, whole genome shotgun sequence	34421..34858	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNRD010000003.1	496405..497273	99.425	870	0						
GCA_032499105.1_PDT001917565.1_genomic.fna	Salmonella_enterica	0.5218	273.328 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNRF010000003.1 Salmonella enterica strain PNUSAS389253 SAMN37692109-rid19629573.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNRF010000041.1 Salmonella enterica strain PNUSAS389253 SAMN37692109-rid19629573.guided.30, whole genome shotgun sequence	12329..12766	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNNRF010000016.1 Salmonella enterica strain PNUSAS389253 SAMN37692109-rid19629573.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNNRF010000016.1 Salmonella enterica strain PNUSAS389253 SAMN37692109-rid19629573.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABNNRF010000007.1	94139..95007	100	869	0						
GCA_032499145.1_PDT001917563.1_genomic.fna	Salmonella_enterica	0.5227	398.461 KB	5	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNRG010000001.1 Salmonella enterica strain PNUSAS389229 SAMN37692112-rid19629553.denovo.01, whole genome shotgun sequence	666961..667398	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNRG010000028.1 Salmonella enterica strain PNUSAS389229 SAMN37692112-rid19629553.guided.20, whole genome shotgun sequence	1415..1852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNRG010000004.1	275644..276513	99.31	870	0						
GCA_032499155.1_PDT001917564.1_genomic.fna	Salmonella_enterica	0.5197	236.909 KB	6	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNRE010000001.1 Salmonella enterica strain PNUSAS386629 SAMN37692117-rid19629563.denovo.01, whole genome shotgun sequence	489894..490331	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNRE010000051.1 Salmonella enterica strain PNUSAS386629 SAMN37692117-rid19629563.guided.24, whole genome shotgun sequence	12439..12876	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNRE010000004.1	39428..40297	98.966	870	0						
GCA_032499185.1_PDT001917561.1_genomic.fna	Salmonella_enterica	0.5214	641.644 KB	2	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNRI010000001.1 Salmonella enterica strain PNUSAS389254 SAMN37692107-rid19629543.denovo.01, whole genome shotgun sequence	1377045..1377482	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNRI010000018.1 Salmonella enterica strain PNUSAS389254 SAMN37692107-rid19629543.guided.08, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNRI010000002.1	545591..546459	99.655	869	0						
GCA_032499205.1_PDT001917560.1_genomic.fna	Salmonella_enterica	0.5203	478.725 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNRJ010000001.1 Salmonella enterica strain PNUSAS389255 SAMN37692103-rid19629533.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNRJ010000022.1 Salmonella enterica strain PNUSAS389255 SAMN37692103-rid19629533.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNRJ010000012.1 Salmonella enterica strain PNUSAS389255 SAMN37692103-rid19629533.denovo.13, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNNRJ010000016.1 Salmonella enterica strain PNUSAS389255 SAMN37692103-rid19629533.denovo.19, whole genome shotgun sequence	3446..3707		enterobacteriales	IncX1	98.93	374 / 374	ABNNRJ010000014.1 Salmonella enterica strain PNUSAS389255 SAMN37692103-rid19629533.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNNRJ010000002.1	553487..554356	99.54	870	0						
GCA_032499225.1_PDT001917558.1_genomic.fna	Salmonella_enterica	0.5196	163.119 KB	9	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNRK010000013.1 Salmonella enterica strain PNUSAS386631 SAMN37692115-rid19629523.denovo.13, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNRK010000059.1 Salmonella enterica strain PNUSAS386631 SAMN37692115-rid19629523.guided.28, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	ABNNRK010000046.1 Salmonella enterica strain PNUSAS386631 SAMN37692115-rid19629523.denovo.49, whole genome shotgun sequence	1831..2512	enterobacteriales	IncFII	96.56	262 / 261	ABNNRK010000029.1 Salmonella enterica strain PNUSAS386631 SAMN37692115-rid19629523.denovo.31, whole genome shotgun sequence	48481..48742		enterobacteriales	IncX1	100	373 / 373	ABNNRK010000038.1 Salmonella enterica strain PNUSAS386631 SAMN37692115-rid19629523.denovo.41, whole genome shotgun sequence	2153..2525																																									avrA	ABNNRK010000030.1	39484..40353	99.655	870	0						
GCA_032499245.1_PDT001917556.1_genomic.fna	Salmonella_enterica	0.5187	274.908 KB	6	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	12	aac(6')-Iaa,aph(6)-Id,aac(6')-Iaa,aadA2,aadA2b,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaCARB-2,blaCARB-2,floR,floR,qnrA1,qnrA1,sul2,sul1,sul1,sul1,sul2,tet(B),tet(B),dfrA12,dfrA12	1	parC_p.T57S	2	IncHI2,IncHI2A	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNNRM010000002.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.denovo.02, whole genome shotgun sequence	108850..109287	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNRM010000050.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.denovo.60, whole genome shotgun sequence	22..858	Streptomycin	M28829	aac(6')-Iaa	99.09	438/438	ABNNRM010000059.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.22, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNNRM010000062.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.37, whole genome shotgun sequence	4254..5045	Spectinomycin, Streptomycin	JQ364967	aadA2b	99.87	780/780	ABNNRM010000063.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.38, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	aph(6)-Id	100	837/837	ABNNRM010000067.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.56, whole genome shotgun sequence	836..1672	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNRM010000067.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.56, whole genome shotgun sequence	33..836	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNNRM010000068.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.57, whole genome shotgun sequence	836..1672	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNNRM010000068.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.57, whole genome shotgun sequence	34..836	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNNRM010000068.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.57, whole genome shotgun sequence	33..836	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNNRM010000068.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.57, whole genome shotgun sequence	33..836	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNNRM010000068.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.57, whole genome shotgun sequence	33..836	Streptomycin	AF321550	blaCARB-2	100	867/867	ABNNRM010000038.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.denovo.44, whole genome shotgun sequence	324..1190	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNNRM010000063.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.38, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	98.19	1214/1215	ABNNRM010000039.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.denovo.46, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNNRM010000065.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.45, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNNRM010000038.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.denovo.44, whole genome shotgun sequence	1450..2106	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNNRM010000063.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.38, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul2	100	816/816	ABNNRM010000043.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.denovo.50, whole genome shotgun sequence	264..1079	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNNRM010000046.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.denovo.54, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNRM010000062.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.37, whole genome shotgun sequence	5550..6389	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNRM010000063.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.38, whole genome shotgun sequence	5490..6329	Sulfamethoxazole	U12338	sul2	100	816/816	ABNNRM010000066.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.51, whole genome shotgun sequence	1557..2372	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNNRM010000033.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.denovo.36, whole genome shotgun sequence	1203..2408	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNRM010000064.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.41, whole genome shotgun sequence	3942..5147	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABNNRM010000037.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.denovo.43, whole genome shotgun sequence	3544..4041	Trimethoprim	AM040708	dfrA12	100	498/498	ABNNRM010000062.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.guided.37, whole genome shotgun sequence	3349..3846	Trimethoprim	AM040708																																																																																																																																																																																																																																																																											parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNNRM010000030.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.denovo.33, whole genome shotgun sequence	10076..10402	enterobacteriales	IncHI2A	99.52	630 / 630	ABNNRM010000027.1 Salmonella enterica strain PNUSAS389263 SAMN37692104-rid19629513.denovo.29, whole genome shotgun sequence	11863..12492																																																avrA	ABNNRM010000001.1	183910..184779	99.54	870	0						
GCA_032499265.1_PDT001917557.1_genomic.fna	Salmonella_enterica	0.5212	372.238 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNRL010000007.1 Salmonella enterica strain PNUSAS384233 SAMN37692116-rid19630563.denovo.07, whole genome shotgun sequence	162510..162947	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNRL010000034.1 Salmonella enterica strain PNUSAS384233 SAMN37692116-rid19630563.guided.25, whole genome shotgun sequence	767..1204	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNRL010000022.1 Salmonella enterica strain PNUSAS384233 SAMN37692116-rid19630563.denovo.22, whole genome shotgun sequence	6168..6810	enterobacteriales	IncFII(S)	100	262 / 262	ABNNRL010000018.1 Salmonella enterica strain PNUSAS384233 SAMN37692116-rid19630563.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABNNRL010000001.1	585339..586208	99.54	870	0						
GCA_032499285.1_PDT001917552.1_genomic.fna	Salmonella_enterica	0.5208	431.265 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNRP010000002.1 Salmonella enterica strain PNUSAS389252 SAMN37692100-rid19630543.denovo.02, whole genome shotgun sequence	83321..83758	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNRP010000019.1 Salmonella enterica strain PNUSAS389252 SAMN37692100-rid19630543.guided.15, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032499305.1_PDT001917554.1_genomic.fna	Salmonella_enterica	0.5221	526.493 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNRO010000001.1 Salmonella enterica strain PNUSAS389251 SAMN37692111-rid19630553.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNRO010000026.1 Salmonella enterica strain PNUSAS389251 SAMN37692111-rid19630553.guided.12, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNRO010000003.1	150078..150947	99.655	870	0						
GCA_032499325.1_PDT001917555.1_genomic.fna	Salmonella_enterica	0.5204	430.002 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNRN010000001.1 Salmonella enterica strain PNUSAS389250 SAMN37692110-rid19629503.denovo.01, whole genome shotgun sequence	562092..562529	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNRN010000031.1 Salmonella enterica strain PNUSAS389250 SAMN37692110-rid19629503.guided.17, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNRN010000011.1	93870..94738	99.195	870	0						
GCA_032499345.1_PDT001917553.1_genomic.fna	Salmonella_enterica	0.5211	406.459 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNRQ010000001.1 Salmonella enterica strain PNUSAS389256 SAMN37692113-rid19629493.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNRQ010000029.1 Salmonella enterica strain PNUSAS389256 SAMN37692113-rid19629493.guided.15, whole genome shotgun sequence	33290..33727	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNRQ010000003.1	150072..150941	99.655	870	0						
GCA_032500225.1_PDT001917506.1_genomic.fna	Salmonella_enterica	0.5221	406.568 KB	4	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6!,purE_6!,sucA_12,thrA_17	Unknown	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6!	purE	100	100	purE_6!	sucA	100	100	sucA_12	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNNTM010000001.1 Salmonella enterica strain PNUSAS389271 SAMN37691994-rid19629253.denovo.01, whole genome shotgun sequence	481936..482373	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNNTM010000036.1 Salmonella enterica strain PNUSAS389271 SAMN37691994-rid19629253.guided.12, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNTM010000005.1	94982..95851	99.77	870	0						
GCA_032500245.1_PDT001917507.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNTJ010000001.1 Salmonella enterica strain PNUSAS389273 SAMN37691986-rid19629263.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNTJ010000025.1 Salmonella enterica strain PNUSAS389273 SAMN37691986-rid19629263.guided.12, whole genome shotgun sequence	26321..26758	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNTJ010000012.1 Salmonella enterica strain PNUSAS389273 SAMN37691986-rid19629263.denovo.13, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNNTJ010000012.1 Salmonella enterica strain PNUSAS389273 SAMN37691986-rid19629263.denovo.13, whole genome shotgun sequence	53092..53353																																																avrA	ABNNTJ010000002.1	553636..554505	99.54	870	0						
GCA_032500265.1_PDT001917505.1_genomic.fna	Salmonella_enterica	0.5213	328.773 KB	5	aroC_81,dnaN_69,hemD_36,hisD_12,purE_68,sucA_12,thrA_17	203	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_69	hemD	100	100	hemD_36	hisD	100	100	hisD_12	purE	100	100	purE_68	sucA	100	100	sucA_12	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNTK010000001.1 Salmonella enterica strain PNUSAS389281 SAMN37691991-rid19630313.denovo.01, whole genome shotgun sequence	322626..323063	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNTK010000038.1 Salmonella enterica strain PNUSAS389281 SAMN37691991-rid19630313.guided.14, whole genome shotgun sequence	41070..41507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNTK010000002.1	554513..555382	99.655	870	0						
GCA_032500345.1_PDT001917504.1_genomic.fna	Salmonella_enterica	0.5204	336.866 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNTL010000002.1 Salmonella enterica strain PNUSAS389283 SAMN37691983-rid19630303.denovo.02, whole genome shotgun sequence	524938..525375	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNTL010000035.1 Salmonella enterica strain PNUSAS389283 SAMN37691983-rid19630303.guided.21, whole genome shotgun sequence	4743..5180	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNTL010000001.1	581271..582140	99.195	870	0						
GCA_032500395.1_PDT001917502.1_genomic.fna	Salmonella_enterica	0.5193	430.301 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNTO010000001.1 Salmonella enterica strain PNUSAS389270 SAMN37691985-rid19630293.denovo.01, whole genome shotgun sequence	561489..561926	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNTO010000031.1 Salmonella enterica strain PNUSAS389270 SAMN37691985-rid19630293.guided.16, whole genome shotgun sequence	5064..5501	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNTO010000012.1	93876..94744	99.195	870	0						
GCA_032500415.1_PDT001917503.1_genomic.fna	Salmonella_enterica	0.5209	406.403 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNTN010000001.1 Salmonella enterica strain PNUSAS389272 SAMN37691996-rid19629243.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNTN010000032.1 Salmonella enterica strain PNUSAS389272 SAMN37691996-rid19629243.guided.16, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNTN010000017.1 Salmonella enterica strain PNUSAS389272 SAMN37691996-rid19629243.denovo.19, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABNNTN010000020.1 Salmonella enterica strain PNUSAS389272 SAMN37691996-rid19629243.denovo.23, whole genome shotgun sequence	3446..3707																																																avrA	ABNNTN010000002.1	121475..122344	99.54	870	0						
GCA_032500465.1_PDT001917500.1_genomic.fna	Salmonella_enterica	0.5217	312.205 KB	6	aroC_2,dnaN_4,hemD_40,hisD_43,purE_481,sucA_2,thrA_425	2125	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_4	hemD	100	100	hemD_40	hisD	100	100	hisD_43	purE	100	100	purE_481	sucA	100	100	sucA_2	thrA	100	100	thrA_425	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNNTQ010000001.1 Salmonella enterica strain PNUSAS389276 SAMN37691998-rid19630283.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNNTQ010000044.1 Salmonella enterica strain PNUSAS389276 SAMN37691998-rid19630283.guided.25, whole genome shotgun sequence	1245..1682	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNTQ010000012.1	99818..100687	99.77	870	0						
GCA_032500485.1_PDT001917501.1_genomic.fna	Salmonella_enterica	0.5212	438.241 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNTP010000001.1 Salmonella enterica strain PNUSAS389279 SAMN37691987-rid19629233.denovo.01, whole genome shotgun sequence	835250..835687	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNTP010000022.1 Salmonella enterica strain PNUSAS389279 SAMN37691987-rid19629233.guided.11, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNTP010000002.1	563542..564411	99.77	870	0						
GCA_032500505.1_PDT001917499.1_genomic.fna	Salmonella_enterica	0.5214	252.886 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		4	IncB/O/K/Z,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNTR010000004.1 Salmonella enterica strain PNUSAS389286 SAMN37692002-rid19629223.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNTR010000050.1 Salmonella enterica strain PNUSAS389286 SAMN37692002-rid19629223.guided.37, whole genome shotgun sequence	40..477	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNNTR010000025.1 Salmonella enterica strain PNUSAS389286 SAMN37692002-rid19629223.denovo.25, whole genome shotgun sequence	27900..29105	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNTR010000051.1 Salmonella enterica strain PNUSAS389286 SAMN37692002-rid19629223.guided.38, whole genome shotgun sequence	878..2083	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncB/O/K/Z	92	150 / 149	ABNNTR010000020.1 Salmonella enterica strain PNUSAS389286 SAMN37692002-rid19629223.denovo.20, whole genome shotgun sequence	57889..58037	enterobacteriales	IncFIB(S)	100	643 / 643	ABNNTR010000018.1 Salmonella enterica strain PNUSAS389286 SAMN37692002-rid19629223.denovo.18, whole genome shotgun sequence	48430..49072		enterobacteriales	IncFII(S)	100	262 / 262	ABNNTR010000018.1 Salmonella enterica strain PNUSAS389286 SAMN37692002-rid19629223.denovo.18, whole genome shotgun sequence	64156..64417		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNNTR010000025.1 Salmonella enterica strain PNUSAS389286 SAMN37692002-rid19629223.denovo.25, whole genome shotgun sequence	35491..35632																																		avrA	ABNNTR010000001.1	174651..175519	100	869	0						
GCA_032500525.1_PDT001917498.1_genomic.fna	Salmonella_enterica	0.5218	447.752 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNTS010000001.1 Salmonella enterica strain PNUSAS389289 SAMN37691999-rid19629213.denovo.01, whole genome shotgun sequence	786143..786580	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNTS010000028.1 Salmonella enterica strain PNUSAS389289 SAMN37691999-rid19629213.guided.18, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNTS010000002.1	551168..552037	99.195	870	0						
GCA_032500545.1_PDT001917497.1_genomic.fna	Salmonella_enterica	0.5132	336.371 KB	6	aroC_56,dnaN_25,hemD_29,hisD_83,purE_79,sucA_26,thrA_78	Unknown	48:z36:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_56	dnaN	100	100	dnaN_25	hemD	100	100	hemD_29	hisD	100	100	hisD_83	purE	100	100	purE_79	sucA	100	100	sucA_26	thrA	100	100	thrA_78	48	z36	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 48:z36:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032500595.1_PDT001917495.1_genomic.fna	Salmonella_enterica	0.5212	707.806 KB	2	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNTY010000001.1 Salmonella enterica strain PNUSAS389291 SAMN37691984-rid19630273.denovo.01, whole genome shotgun sequence	624559..624996	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNTY010000022.1 Salmonella enterica strain PNUSAS389291 SAMN37691984-rid19630273.guided.13, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032500965.1_PDT001917486.1_genomic.fna	Salmonella_enterica	0.5219	191.426 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNUE010000001.1 Salmonella enterica strain PNUSAS389207 SAMN37691604-rid19629133.denovo.01, whole genome shotgun sequence	145579..146016	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNUE010000056.1 Salmonella enterica strain PNUSAS389207 SAMN37691604-rid19629133.guided.36, whole genome shotgun sequence	12149..12586	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNUE010000007.1	39621..40489	99.77	870	0						
GCA_032501065.1_PDT001917483.1_genomic.fna	Salmonella_enterica	0.5211	406.053 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNUI010000001.1 Salmonella enterica strain PNUSAS389206 SAMN37691608-rid19629123.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNUI010000027.1 Salmonella enterica strain PNUSAS389206 SAMN37691608-rid19629123.guided.16, whole genome shotgun sequence	14124..14561	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNUI010000019.1 Salmonella enterica strain PNUSAS389206 SAMN37691608-rid19629123.denovo.21, whole genome shotgun sequence	6827..7469	enterobacteriales	IncFII(S)	100	262 / 262	ABNNUI010000020.1 Salmonella enterica strain PNUSAS389206 SAMN37691608-rid19629123.denovo.23, whole genome shotgun sequence	3398..3659																																																avrA	ABNNUI010000002.1	553089..553958	99.54	870	0						
GCA_032501465.1_PDT001917469.1_genomic.fna	Salmonella_enterica	0.5222	284.064 KB	7	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNUU010000001.1 Salmonella enterica strain PNUSAS389208 SAMN37691606-rid19629033.denovo.01, whole genome shotgun sequence	177159..177596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNUU010000035.1 Salmonella enterica strain PNUSAS389208 SAMN37691606-rid19629033.guided.26, whole genome shotgun sequence	11221..11658	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNUU010000004.1	147880..148749	99.77	870	0						
GCA_032501485.1_PDT001917470.1_genomic.fna	Salmonella_enterica	0.5212	219.289 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNUV010000001.1 Salmonella enterica strain PNUSAS389209 SAMN37691610-rid19630173.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNUV010000046.1 Salmonella enterica strain PNUSAS389209 SAMN37691610-rid19630173.guided.31, whole genome shotgun sequence	20997..21434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNUV010000003.1	207907..208775	99.77	870	0						
GCA_032501585.1_PDT001917468.1_genomic.fna	Salmonella_enterica	0.5206	401.221 KB	4	aroC_13,dnaN_127,hemD_506,hisD_113,purE_114,sucA_107,thrA_4	3095	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_506	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNUX010000001.1 Salmonella enterica strain PNUSAS389195 SAMN37691463-rid19629023.denovo.01, whole genome shotgun sequence	642582..643019	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNUX010000029.1 Salmonella enterica strain PNUSAS389195 SAMN37691463-rid19629023.guided.17, whole genome shotgun sequence	8839..9276	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNUX010000002.1	140447..141316	99.425	870	0						
GCA_032501605.1_PDT001917467.1_genomic.fna	Salmonella_enterica	0.5214	478.73 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNUW010000001.1 Salmonella enterica strain PNUSAS389198 SAMN37691473-rid19629013.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNUW010000024.1 Salmonella enterica strain PNUSAS389198 SAMN37691473-rid19629013.guided.15, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNUW010000013.1 Salmonella enterica strain PNUSAS389198 SAMN37691473-rid19629013.denovo.13, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABNNUW010000017.1 Salmonella enterica strain PNUSAS389198 SAMN37691473-rid19629013.denovo.20, whole genome shotgun sequence	3406..3667																																																avrA	ABNNUW010000002.1	553485..554354	99.54	870	0						
GCA_032501625.1_PDT001917466.1_genomic.fna	Salmonella_enterica	0.5204	406.479 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNUY010000001.1 Salmonella enterica strain PNUSAS389202 SAMN37691467-rid19629003.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNUY010000029.1 Salmonella enterica strain PNUSAS389202 SAMN37691467-rid19629003.guided.22, whole genome shotgun sequence	4660..5097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNUY010000019.1 Salmonella enterica strain PNUSAS389202 SAMN37691467-rid19629003.denovo.21, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNNUY010000020.1 Salmonella enterica strain PNUSAS389202 SAMN37691467-rid19629003.denovo.23, whole genome shotgun sequence	3387..3648		enterobacteriales	IncX1	98.93	374 / 374	ABNNUY010000015.1 Salmonella enterica strain PNUSAS389202 SAMN37691467-rid19629003.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNNUY010000002.1	553691..554560	99.54	870	0						
GCA_032501675.1_PDT001917447.1_genomic.fna	Salmonella_enterica	0.5212	257.538 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNVA010000001.1 Salmonella enterica strain PNUSAS389203 SAMN37691475-rid19628853.denovo.01, whole genome shotgun sequence	381662..382099	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNVA010000046.1 Salmonella enterica strain PNUSAS389203 SAMN37691475-rid19628853.guided.30, whole genome shotgun sequence	23455..23892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNVA010000003.1	175008..175876	99.77	870	0						
GCA_032501705.1_PDT001917465.1_genomic.fna	Salmonella_enterica	0.5211	489.496 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNUZ010000001.1 Salmonella enterica strain PNUSAS389200 SAMN37691461-rid19630163.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNUZ010000024.1 Salmonella enterica strain PNUSAS389200 SAMN37691461-rid19630163.guided.13, whole genome shotgun sequence	20653..21090	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNUZ010000016.1 Salmonella enterica strain PNUSAS389200 SAMN37691461-rid19630163.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNNUZ010000018.1 Salmonella enterica strain PNUSAS389200 SAMN37691461-rid19630163.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABNNUZ010000002.1	553641..554510	99.54	870	0						
GCA_032501735.1_PDT001818213.1_genomic.fna	Salmonella_enterica	0.5231	320.438 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNVB010000001.1 Salmonella enterica strain PNUSAS361203 SAMN36493970-rid18798293.denovo.01, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNVB010000029.1 Salmonella enterica strain PNUSAS361203 SAMN36493970-rid18798293.guided.25, whole genome shotgun sequence	8838..9275	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032501805.1_PDT001818212.1_genomic.fna	Salmonella_enterica	0.5205	406.414 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNVD010000001.1 Salmonella enterica strain PNUSAS361206 SAMN36493969-rid18798863.denovo.01, whole genome shotgun sequence	755129..755566	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNVD010000033.1 Salmonella enterica strain PNUSAS361206 SAMN36493969-rid18798863.guided.18, whole genome shotgun sequence	15242..15679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNVD010000019.1 Salmonella enterica strain PNUSAS361206 SAMN36493969-rid18798863.denovo.21, whole genome shotgun sequence	4659..5301	enterobacteriales	IncFII(S)	100	262 / 262	ABNNVD010000023.1 Salmonella enterica strain PNUSAS361206 SAMN36493969-rid18798863.denovo.26, whole genome shotgun sequence	3307..3568		enterobacteriales	IncX1	98.93	374 / 374	ABNNVD010000014.1 Salmonella enterica strain PNUSAS361206 SAMN36493969-rid18798863.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNNVD010000002.1	553684..554553	99.54	870	0						
GCA_032501825.1_PDT001818211.1_genomic.fna	Salmonella_enterica	0.5208	406.452 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNVC010000001.1 Salmonella enterica strain PNUSAS363083 SAMN36493974-rid18798853.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNVC010000027.1 Salmonella enterica strain PNUSAS363083 SAMN36493974-rid18798853.guided.20, whole genome shotgun sequence	3994..4431	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNVC010000020.1 Salmonella enterica strain PNUSAS363083 SAMN36493974-rid18798853.denovo.21, whole genome shotgun sequence	6828..7470	enterobacteriales	IncFII(S)	100	262 / 262	ABNNVC010000021.1 Salmonella enterica strain PNUSAS363083 SAMN36493974-rid18798853.denovo.24, whole genome shotgun sequence	3406..3667																																																avrA	ABNNVC010000002.1	553362..554231	99.54	870	0						
GCA_032501855.1_PDT001818209.1_genomic.fna	Salmonella_enterica	0.5213	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNVF010000001.1 Salmonella enterica strain PNUSAS363073 SAMN36493973-rid18798843.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNVF010000025.1 Salmonella enterica strain PNUSAS363073 SAMN36493973-rid18798843.guided.19, whole genome shotgun sequence	5080..5517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNVF010000017.1 Salmonella enterica strain PNUSAS363073 SAMN36493973-rid18798843.denovo.18, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNNVF010000018.1 Salmonella enterica strain PNUSAS363073 SAMN36493973-rid18798843.denovo.21, whole genome shotgun sequence	3390..3651																																																avrA	ABNNVF010000002.1	553635..554504	99.54	870	0						
GCA_032501875.1_PDT001818210.1_genomic.fna	Salmonella_enterica	0.5204	435.719 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	1	parC_p.T57S	2	IncFII,IncFII,IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNVE010000001.1 Salmonella enterica strain PNUSAS361199 SAMN36493968-rid18798283.denovo.01, whole genome shotgun sequence	563909..564346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNVE010000025.1 Salmonella enterica strain PNUSAS361199 SAMN36493968-rid18798283.guided.20, whole genome shotgun sequence	26146..26583	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNNVE010000015.1 Salmonella enterica strain PNUSAS361199 SAMN36493968-rid18798283.denovo.15, whole genome shotgun sequence	14122..14982	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNNVE010000026.1 Salmonella enterica strain PNUSAS361199 SAMN36493968-rid18798283.guided.21, whole genome shotgun sequence	12627..13487	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII	99.24	262 / 261	ABNNVE010000015.1 Salmonella enterica strain PNUSAS361199 SAMN36493968-rid18798283.denovo.15, whole genome shotgun sequence	10495..10756	enterobacteriales	IncFII	99.24	262 / 261	ABNNVE010000026.1 Salmonella enterica strain PNUSAS361199 SAMN36493968-rid18798283.guided.21, whole genome shotgun sequence	16853..17114		enterobacteriales	IncFII(p96A)	100	534 / 534	ABNNVE010000016.1 Salmonella enterica strain PNUSAS361199 SAMN36493968-rid18798283.denovo.16, whole genome shotgun sequence	2889..3422																																									avrA	ABNNVE010000010.1	150695..151565	99.196	871	0						
GCA_032501905.1_PDT001818208.1_genomic.fna	Salmonella_enterica	0.5212	406.455 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNVG010000001.1 Salmonella enterica strain PNUSAS361963 SAMN36493964-rid18798273.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNVG010000027.1 Salmonella enterica strain PNUSAS361963 SAMN36493964-rid18798273.guided.23, whole genome shotgun sequence	100..537	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNVG010000019.1 Salmonella enterica strain PNUSAS361963 SAMN36493964-rid18798273.denovo.19, whole genome shotgun sequence	6837..7479	enterobacteriales	IncFII(S)	100	262 / 262	ABNNVG010000020.1 Salmonella enterica strain PNUSAS361963 SAMN36493964-rid18798273.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABNNVG010000002.1	585348..586217	99.54	870	0						
GCA_032501925.1_PDT001818207.1_genomic.fna	Salmonella_enterica	0.522	51.484 KB	31	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNVH010000020.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313540 SAMN36493963-rid18798833.denovo.020, whole genome shotgun sequence	12279..12716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNVH010000188.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313540 SAMN36493963-rid18798833.guided.062, whole genome shotgun sequence	13959..14396	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNVH010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313540 SAMN36493963-rid18798833.denovo.118, whole genome shotgun sequence	5371..5930																																																						avrA	ABNNVH010000044.1	39430..40299	99.655	870	0						
GCA_032501945.1_PDT001818206.1_genomic.fna	Salmonella_enterica	0.52	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaTEM-1D,blaTEM-1D,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNVI010000001.1 Salmonella enterica strain PNUSAS361962 SAMN36493965-rid18798823.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNVI010000032.1 Salmonella enterica strain PNUSAS361962 SAMN36493965-rid18798823.denovo.36, whole genome shotgun sequence	12905..13696	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNVI010000032.1 Salmonella enterica strain PNUSAS361962 SAMN36493965-rid18798823.denovo.36, whole genome shotgun sequence	12905..13696	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNNVI010000055.1 Salmonella enterica strain PNUSAS361962 SAMN36493965-rid18798823.guided.26, whole genome shotgun sequence	20991..21428	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNVI010000058.1 Salmonella enterica strain PNUSAS361962 SAMN36493965-rid18798823.guided.43, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNVI010000058.1 Salmonella enterica strain PNUSAS361962 SAMN36493965-rid18798823.guided.43, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	blaTEM-1D	100	861/861	ABNNVI010000024.1 Salmonella enterica strain PNUSAS361962 SAMN36493965-rid18798823.denovo.25, whole genome shotgun sequence	44627..45487	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AF188200	blaTEM-1D	100	861/861	ABNNVI010000057.1 Salmonella enterica strain PNUSAS361962 SAMN36493965-rid18798823.guided.33, whole genome shotgun sequence	15554..16414	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AF188200	sul1	100	840/840	ABNNVI010000032.1 Salmonella enterica strain PNUSAS361962 SAMN36493965-rid18798823.denovo.36, whole genome shotgun sequence	11561..12400	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNVI010000058.1 Salmonella enterica strain PNUSAS361962 SAMN36493965-rid18798823.guided.43, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	99.92	1200/1200	ABNNVI010000059.1 Salmonella enterica strain PNUSAS361962 SAMN36493965-rid18798823.guided.49, whole genome shotgun sequence	15..1214	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNVI010000060.1 Salmonella enterica strain PNUSAS361962 SAMN36493965-rid18798823.guided.50, whole genome shotgun sequence	15..1214	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNVI010000029.1 Salmonella enterica strain PNUSAS361962 SAMN36493965-rid18798823.denovo.31, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX1	98.94	377 / 377	ABNNVI010000024.1 Salmonella enterica strain PNUSAS361962 SAMN36493965-rid18798823.denovo.25, whole genome shotgun sequence	4398..4774																																																avrA	ABNNVI010000002.1	149828..150697	99.655	870	0						
GCA_032501965.1_PDT001818205.1_genomic.fna	Salmonella_enterica	0.5211	394.597 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNVJ010000001.1 Salmonella enterica strain PNUSAS361200 SAMN36493956-rid18798263.denovo.01, whole genome shotgun sequence	477888..478325	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNVJ010000031.1 Salmonella enterica strain PNUSAS361200 SAMN36493956-rid18798263.guided.15, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNVJ010000002.1	145182..146051	99.31	870	0						
GCA_032501985.1_PDT001818203.1_genomic.fna	Salmonella_enterica	0.5213	737.582 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNVL010000001.1 Salmonella enterica strain PNUSAS361204 SAMN36493960-rid18798253.denovo.01, whole genome shotgun sequence	731062..731499	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNVL010000014.1 Salmonella enterica strain PNUSAS361204 SAMN36493960-rid18798253.guided.13, whole genome shotgun sequence	2095..2532	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032502005.1_PDT001818204.1_genomic.fna	Salmonella_enterica	0.5233	61.687 KB	25	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNVK010000061.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS22313543 SAMN36493967-rid18798813.denovo.061, whole genome shotgun sequence	11321..11758	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNVK010000157.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS22313543 SAMN36493967-rid18798813.guided.071, whole genome shotgun sequence	14155..14592	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNNVK010000124.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS22313543 SAMN36493967-rid18798813.denovo.127, whole genome shotgun sequence	186..316																																																																	
GCA_032502025.1_PDT001818201.1_genomic.fna	Salmonella_enterica	0.5232	66.379 KB	25	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNVM010000016.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.denovo.016, whole genome shotgun sequence	75588..76025	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNVM010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.denovo.073, whole genome shotgun sequence	18494..19285	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNVM010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.denovo.073, whole genome shotgun sequence	18494..19285	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNNVM010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.denovo.119, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNVM010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.denovo.119, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNNVM010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.guided.072, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNVM010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.guided.072, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNNVM010000160.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.guided.085, whole genome shotgun sequence	14160..14597	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNNVM010000162.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.guided.117, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNVM010000162.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.guided.117, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNNVM010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.denovo.111, whole genome shotgun sequence	3786..4999	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNNVM010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.guided.123, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNNVM010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.denovo.073, whole genome shotgun sequence	17150..17989	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNVM010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.guided.072, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNNVM010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.denovo.073, whole genome shotgun sequence	3434..4633	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNVM010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.guided.072, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNVM010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313491 SAMN36493961-rid18798793.denovo.081, whole genome shotgun sequence	2609..3168																																																						avrA	ABNNVM010000026.1	61526..62395	99.655	870	0						
GCA_032502045.1_PDT001818202.1_genomic.fna	Salmonella_enterica	0.5201	394.336 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNVN010000001.1 Salmonella enterica strain PNUSAS361966 SAMN36493955-rid18798803.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNVN010000032.1 Salmonella enterica strain PNUSAS361966 SAMN36493955-rid18798803.guided.22, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABNNVN010000017.1 Salmonella enterica strain PNUSAS361966 SAMN36493955-rid18798803.denovo.17, whole genome shotgun sequence	29415..29736																																																						avrA	ABNNVN010000002.1	144915..145784	99.31	870	0						
GCA_032502065.1_PDT001818200.1_genomic.fna	Salmonella_enterica	0.5221	380.394 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNNVO010000001.1 Salmonella enterica strain PNUSAS361965 SAMN36493957-rid18798243.denovo.01, whole genome shotgun sequence	618750..619187	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNNVO010000022.1 Salmonella enterica strain PNUSAS361965 SAMN36493957-rid18798243.guided.20, whole genome shotgun sequence	2405..2842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNVO010000005.1	149711..150581	99.426	871	0						
GCA_032502085.1_PDT001818199.1_genomic.fna	Salmonella_enterica	0.5219	337.839 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNVP010000001.1 Salmonella enterica strain PNUSAS361960 SAMN36493958-rid18798783.denovo.01, whole genome shotgun sequence	772111..772548	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNVP010000038.1 Salmonella enterica strain PNUSAS361960 SAMN36493958-rid18798783.guided.21, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNVP010000003.1	153272..154141	99.195	870	0						
GCA_032502105.1_PDT001818198.1_genomic.fna	Salmonella_enterica	0.5205	412.718 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNVQ010000011.1 Salmonella enterica strain PNUSAS361201 SAMN36493959-rid18798233.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNVQ010000036.1 Salmonella enterica strain PNUSAS361201 SAMN36493959-rid18798233.guided.25, whole genome shotgun sequence	16967..17404	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNNVQ010000018.1 Salmonella enterica strain PNUSAS361201 SAMN36493959-rid18798233.denovo.18, whole genome shotgun sequence	34957..35490																																																						avrA	ABNNVQ010000001.1	187844..188710	98.966	870	0						
GCA_032502125.1_PDT001818196.1_genomic.fna	Salmonella_enterica	0.523	39.916 KB	38	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNVS010000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313542 SAMN36493966-rid18798763.denovo.007, whole genome shotgun sequence	12481..12918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNVS010000234.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313542 SAMN36493966-rid18798763.guided.063, whole genome shotgun sequence	14458..14895	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNNVS010000104.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313542 SAMN36493966-rid18798763.denovo.105, whole genome shotgun sequence	1396..2541	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNNVS010000238.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313542 SAMN36493966-rid18798763.guided.160, whole genome shotgun sequence	1408..2553	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNNVS010000142.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313542 SAMN36493966-rid18798763.denovo.145, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNNVS010000236.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313542 SAMN36493966-rid18798763.guided.144, whole genome shotgun sequence	3336..4151	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNNVS010000142.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313542 SAMN36493966-rid18798763.denovo.145, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNVS010000236.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313542 SAMN36493966-rid18798763.guided.144, whole genome shotgun sequence	6328..7527	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNNVS010000165.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313542 SAMN36493966-rid18798763.denovo.170, whole genome shotgun sequence	371..501	enterobacteriales	IncC	100	417 / 417	ABNNVS010000036.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313542 SAMN36493966-rid18798763.denovo.036, whole genome shotgun sequence	38349..38765																																																avrA	ABNNVS010000008.1	81753..82622	99.885	870	0						
GCA_032502145.1_PDT001818194.1_genomic.fna	Salmonella_enterica	0.5205	361.247 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNVU010000001.1 Salmonella enterica strain PNUSAS363326 SAMN36493651-rid18798753.denovo.01, whole genome shotgun sequence	176046..176483	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNVU010000032.1 Salmonella enterica strain PNUSAS363326 SAMN36493651-rid18798753.guided.29, whole genome shotgun sequence	995..1432	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNVU010000022.1 Salmonella enterica strain PNUSAS363326 SAMN36493651-rid18798753.denovo.23, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNNVU010000024.1 Salmonella enterica strain PNUSAS363326 SAMN36493651-rid18798753.denovo.25, whole genome shotgun sequence	3388..3649		enterobacteriales	IncX1	98.93	374 / 374	ABNNVU010000018.1 Salmonella enterica strain PNUSAS363326 SAMN36493651-rid18798753.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABNNVU010000004.1	174740..175609	99.54	870	0						
GCA_032502165.1_PDT001818192.1_genomic.fna	Salmonella_enterica	0.521	433.742 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNVW010000001.1 Salmonella enterica strain PNUSAS363323 SAMN36493656-rid18798743.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNVW010000023.1 Salmonella enterica strain PNUSAS363323 SAMN36493656-rid18798743.guided.18, whole genome shotgun sequence	694..1131	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNVW010000016.1 Salmonella enterica strain PNUSAS363323 SAMN36493656-rid18798743.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNNVW010000017.1 Salmonella enterica strain PNUSAS363323 SAMN36493656-rid18798743.denovo.19, whole genome shotgun sequence	3393..3654																																																avrA	ABNNVW010000002.1	583725..584594	99.54	870	0						
GCA_032502185.1_PDT001818187.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNWB010000001.1 Salmonella enterica strain PNUSAS363070 SAMN36493648-rid18798703.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNWB010000027.1 Salmonella enterica strain PNUSAS363070 SAMN36493648-rid18798703.guided.21, whole genome shotgun sequence	1422..1859	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNWB010000017.1 Salmonella enterica strain PNUSAS363070 SAMN36493648-rid18798703.denovo.17, whole genome shotgun sequence	6838..7480	enterobacteriales	IncFII(S)	100	262 / 262	ABNNWB010000019.1 Salmonella enterica strain PNUSAS363070 SAMN36493648-rid18798703.denovo.22, whole genome shotgun sequence	3395..3656																																																avrA	ABNNWB010000002.1	553636..554505	99.54	870	0						
GCA_032502205.1_PDT001818184.1_genomic.fna	Salmonella_enterica	0.5228	64.784 KB	25	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNWE010000016.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313490 SAMN36493643-rid18798673.denovo.016, whole genome shotgun sequence	75497..75934	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNWE010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313490 SAMN36493643-rid18798673.denovo.073, whole genome shotgun sequence	18442..19233	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNWE010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313490 SAMN36493643-rid18798673.denovo.073, whole genome shotgun sequence	18442..19233	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNNWE010000168.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313490 SAMN36493643-rid18798673.guided.071, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNWE010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313490 SAMN36493643-rid18798673.guided.099, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNWE010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313490 SAMN36493643-rid18798673.guided.099, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNNWE010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313490 SAMN36493643-rid18798673.denovo.152, whole genome shotgun sequence	397..1272	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNNWE010000172.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313490 SAMN36493643-rid18798673.guided.150, whole genome shotgun sequence	438..1313	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNNWE010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313490 SAMN36493643-rid18798673.denovo.073, whole genome shotgun sequence	17098..17937	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNWE010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313490 SAMN36493643-rid18798673.guided.099, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNNWE010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313490 SAMN36493643-rid18798673.denovo.073, whole genome shotgun sequence	3382..4581	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNWE010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313490 SAMN36493643-rid18798673.guided.115, whole genome shotgun sequence	2144..3343	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNWE010000104.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313490 SAMN36493643-rid18798673.denovo.108, whole genome shotgun sequence	5623..6182																																																						avrA	ABNNWE010000009.1	94091..94960	99.655	870	0						
GCA_032502225.1_PDT001818182.1_genomic.fna	Salmonella_enterica	0.5203	46.38 KB	37	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	-:r:1,2	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaCMY-2,blaCMY-2,fosA7,floR,floR,sul2,sul2,tet(A),tet(B),tet(B),tet(A)	1	parC_p.T57S	4	ColRNAI,IncC,IncHI2A,IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNNWG010000015.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.denovo.015, whole genome shotgun sequence	12389..12826	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNWG010000169.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.denovo.176, whole genome shotgun sequence	22..858	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNNWG010000169.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.denovo.176, whole genome shotgun sequence	858..1660	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNNWG010000169.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.denovo.176, whole genome shotgun sequence	858..1661	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNNWG010000169.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.denovo.176, whole genome shotgun sequence	858..1661	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNNWG010000169.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.denovo.176, whole genome shotgun sequence	858..1661	Streptomycin	AF321550	aac(6')-Iaa	97.26	438/438	ABNNWG010000226.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.guided.067, whole genome shotgun sequence	14833..15270	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNWG010000234.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.guided.197, whole genome shotgun sequence	832..1668	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNWG010000234.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.guided.197, whole genome shotgun sequence	29..832	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNNWG010000235.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.guided.198, whole genome shotgun sequence	832..1668	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNNWG010000235.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.guided.198, whole genome shotgun sequence	30..832	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNNWG010000235.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.guided.198, whole genome shotgun sequence	29..832	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNNWG010000235.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.guided.198, whole genome shotgun sequence	29..832	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNNWG010000235.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.guided.198, whole genome shotgun sequence	29..832	Streptomycin	AF321550	blaCMY-2	100	1146/1146	ABNNWG010000039.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.denovo.039, whole genome shotgun sequence	29251..30396	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNNWG010000229.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.guided.160, whole genome shotgun sequence	1574..2719	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	fosA7	99.13	343/423	ABNNWG010000232.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.guided.183, whole genome shotgun sequence	30..371	Fosfomycin	LAPJ01000014	floR	98.19	1214/1215	ABNNWG010000139.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.denovo.143, whole genome shotgun sequence	3093..4306	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNNWG010000231.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.guided.172, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNNWG010000039.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.denovo.039, whole genome shotgun sequence	95..910	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNNWG010000225.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.guided.065, whole genome shotgun sequence	26796..27611	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNNWG010000139.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.denovo.143, whole genome shotgun sequence	1218..2492	Doxycycline, Tetracycline	AF534183	tet(B)	100	1206/1206	ABNNWG010000165.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.denovo.171, whole genome shotgun sequence	556..1761	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNWG010000230.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.guided.170, whole genome shotgun sequence	2358..3563	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1275/1275	ABNNWG010000233.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.guided.192, whole genome shotgun sequence	508..1782	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																									parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNNWG010000161.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.denovo.166, whole genome shotgun sequence	4021..4151	enterobacteriales	IncC	100	417 / 417	ABNNWG010000068.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.denovo.070, whole genome shotgun sequence	17492..17908		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNWG010000108.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.denovo.111, whole genome shotgun sequence	555..1184		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNNWG010000167.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313484 SAMN36493637-rid18798663.denovo.174, whole genome shotgun sequence	3359..3500																																		avrA	ABNNWG010000003.1	83832..84701	99.54	870	0						
GCA_032502245.1_PDT001818181.1_genomic.fna	Salmonella_enterica	0.5218	257.847 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNWH010000001.1 Salmonella enterica strain PNUSAS363319 SAMN36493640-rid18798653.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNWH010000043.1 Salmonella enterica strain PNUSAS363319 SAMN36493640-rid18798653.guided.37, whole genome shotgun sequence	3522..3959	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNNWH010000024.1 Salmonella enterica strain PNUSAS363319 SAMN36493640-rid18798653.denovo.24, whole genome shotgun sequence	44730..45372	enterobacteriales	IncFII(S)	100	262 / 262	ABNNWH010000024.1 Salmonella enterica strain PNUSAS363319 SAMN36493640-rid18798653.denovo.24, whole genome shotgun sequence	29384..29645																																																avrA	ABNNWH010000004.1	174651..175519	100	869	0						
GCA_032502265.1_PDT001818195.1_genomic.fna	Salmonella_enterica	0.5205	291.189 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNVT010000001.1 Salmonella enterica strain PNUSAS363310 SAMN36493650-rid18798223.denovo.01, whole genome shotgun sequence	800277..800714	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNVT010000031.1 Salmonella enterica strain PNUSAS363310 SAMN36493650-rid18798223.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNVT010000003.1	133896..134765	99.195	870	0						
GCA_032502285.1_PDT001818197.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNVR010000001.1 Salmonella enterica strain PNUSAS361964 SAMN36493962-rid18798773.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNVR010000023.1 Salmonella enterica strain PNUSAS361964 SAMN36493962-rid18798773.guided.12, whole genome shotgun sequence	32348..32785	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNVR010000015.1 Salmonella enterica strain PNUSAS361964 SAMN36493962-rid18798773.denovo.17, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNNVR010000016.1 Salmonella enterica strain PNUSAS361964 SAMN36493962-rid18798773.denovo.18, whole genome shotgun sequence	3387..3648																																																avrA	ABNNVR010000002.1	553636..554505	99.54	870	0						
GCA_032502305.1_PDT001818191.1_genomic.fna	Salmonella_enterica	0.5215	394.336 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNVX010000001.1 Salmonella enterica strain PNUSAS363072 SAMN36493652-rid18798733.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNVX010000031.1 Salmonella enterica strain PNUSAS363072 SAMN36493652-rid18798733.guided.24, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNVX010000002.1	145182..146051	99.31	870	0						
GCA_032502325.1_PDT001818193.1_genomic.fna	Salmonella_enterica	0.5231	377.956 KB	4	aroC_5,dnaN_14,hemD_21,hisD_9,purE_6,sucA_12,thrA_17	49	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNVV010000001.1 Salmonella enterica strain PNUSAS363082 SAMN36493649-rid18798213.denovo.01, whole genome shotgun sequence	808770..809207	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNVV010000033.1 Salmonella enterica strain PNUSAS363082 SAMN36493649-rid18798213.guided.27, whole genome shotgun sequence	5089..5526	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNVV010000003.1	140105..140974	99.54	870	0						
GCA_032502345.1_PDT001818190.1_genomic.fna	Salmonella_enterica	0.5214	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNVY010000001.1 Salmonella enterica strain PNUSAS363325 SAMN36493645-rid18798723.denovo.01, whole genome shotgun sequence	774436..774873	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNVY010000022.1 Salmonella enterica strain PNUSAS363325 SAMN36493645-rid18798723.guided.14, whole genome shotgun sequence	14117..14554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNVY010000012.1 Salmonella enterica strain PNUSAS363325 SAMN36493645-rid18798723.denovo.12, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABNNVY010000016.1 Salmonella enterica strain PNUSAS363325 SAMN36493645-rid18798723.denovo.19, whole genome shotgun sequence	3395..3656																																																avrA	ABNNVY010000002.1	553486..554355	99.54	870	0						
GCA_032502415.1_PDT001818186.1_genomic.fna	Salmonella_enterica	0.522	387.937 KB	5	aroC_46,dnaN_201,hemD_146,hisD_9,purE_6,sucA_19,thrA_1	1394	4:z:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_201	hemD	100	100	hemD_146	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_1	4	z	1,2	Salmonella enterica subspecies enterica (subspecies I)	Shubra		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNWC010000001.1 Salmonella enterica strain PNUSAS363322 SAMN36493647-rid18798693.denovo.01, whole genome shotgun sequence	643595..644032	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNWC010000025.1 Salmonella enterica strain PNUSAS363322 SAMN36493647-rid18798693.guided.21, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNWC010000002.1	403358..404227	99.655	870	0						
GCA_032502425.1_PDT001818188.1_genomic.fna	Salmonella_enterica	0.5217	682.779 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNWA010000001.1 Salmonella enterica strain PNUSAS363321 SAMN36493646-rid18798203.denovo.01, whole genome shotgun sequence	510589..511026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNWA010000022.1 Salmonella enterica strain PNUSAS363321 SAMN36493646-rid18798203.guided.16, whole genome shotgun sequence	13084..13521	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNWA010000002.1	544606..545474	99.425	870	0						
GCA_032502485.1_PDT001818189.1_genomic.fna	Salmonella_enterica	0.5226	449.088 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNVZ010000001.1 Salmonella enterica strain PNUSAS363324 SAMN36493644-rid18798713.denovo.01, whole genome shotgun sequence	834902..835339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNVZ010000024.1 Salmonella enterica strain PNUSAS363324 SAMN36493644-rid18798713.guided.19, whole genome shotgun sequence	6653..7090	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNVZ010000007.1	132777..133646	98.966	870	0						
GCA_032502525.1_PDT001818183.1_genomic.fna	Salmonella_enterica	0.523	253.21 KB	6	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNWF010000001.1 Salmonella enterica strain PNUSAS363317 SAMN36493655-rid18798193.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNWF010000046.1 Salmonella enterica strain PNUSAS363317 SAMN36493655-rid18798193.guided.27, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032502545.1_PDT001818185.1_genomic.fna	Salmonella_enterica	0.5208	384.006 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNWD010000002.1 Salmonella enterica strain PNUSAS363318 SAMN36493653-rid18798683.denovo.02, whole genome shotgun sequence	384595..385032	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNWD010000046.1 Salmonella enterica strain PNUSAS363318 SAMN36493653-rid18798683.guided.26, whole genome shotgun sequence	3528..3965	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNWD010000011.1	93261..94131	99.196	871	0						
GCA_032502575.1_PDT001818180.1_genomic.fna	Salmonella_enterica	0.5213	392.895 KB	4	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNWI010000001.1 Salmonella enterica strain PNUSAS363078 SAMN36493632-rid18798643.denovo.01, whole genome shotgun sequence	805659..806096	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNWI010000033.1 Salmonella enterica strain PNUSAS363078 SAMN36493632-rid18798643.guided.20, whole genome shotgun sequence	860..1297	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032502625.1_PDT001818179.1_genomic.fna	Salmonella_enterica	0.522	699.682 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNNWJ010000001.1 Salmonella enterica strain PNUSAS363312 SAMN36493633-rid18798633.denovo.01, whole genome shotgun sequence	510579..511016	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNNWJ010000022.1 Salmonella enterica strain PNUSAS363312 SAMN36493633-rid18798633.guided.18, whole genome shotgun sequence	5364..5801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNWJ010000002.1	544628..545496	99.425	870	0						
GCA_032502675.1_PDT001818178.1_genomic.fna	Salmonella_enterica	0.5204	285.392 KB	5	aroC_41,dnaN_332,hemD_79,hisD_62,purE_28,sucA_14,thrA_96	1384	38:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_62	purE	100	100	purE_28	sucA	100	100	sucA_14	thrA	100	100	thrA_96	38	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Inverness		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNNWL010000001.1 Salmonella enterica strain PNUSAS363309 SAMN36493636-rid18798183.denovo.01, whole genome shotgun sequence	575864..576301	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNNWL010000039.1 Salmonella enterica strain PNUSAS363309 SAMN36493636-rid18798183.guided.29, whole genome shotgun sequence	775..1212	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNNWL010000015.1 Salmonella enterica strain PNUSAS363309 SAMN36493636-rid18798183.denovo.15, whole genome shotgun sequence	77771..78413																																																						avrA	ABNNWL010000002.1	538621..539490	99.54	870	0						
GCA_032502725.1_PDT001818177.1_genomic.fna	Salmonella_enterica	0.5224	55.767 KB	31	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNWK010000012.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313485 SAMN36493639-rid18798623.denovo.012, whole genome shotgun sequence	75549..75986	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNWK010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313485 SAMN36493639-rid18798623.denovo.098, whole genome shotgun sequence	11982..12773	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNWK010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313485 SAMN36493639-rid18798623.denovo.098, whole genome shotgun sequence	11982..12773	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNNWK010000186.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313485 SAMN36493639-rid18798623.guided.065, whole genome shotgun sequence	15469..15906	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNWK010000188.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313485 SAMN36493639-rid18798623.guided.112, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNWK010000188.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313485 SAMN36493639-rid18798623.guided.112, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNNWK010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313485 SAMN36493639-rid18798623.denovo.139, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNNWK010000191.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313485 SAMN36493639-rid18798623.guided.137, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNNWK010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313485 SAMN36493639-rid18798623.denovo.098, whole genome shotgun sequence	10638..11477	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNWK010000188.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313485 SAMN36493639-rid18798623.guided.112, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNNWK010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313485 SAMN36493639-rid18798623.denovo.128, whole genome shotgun sequence	1809..3008	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNWK010000190.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313485 SAMN36493639-rid18798623.guided.131, whole genome shotgun sequence	1821..3020	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNWK010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313485 SAMN36493639-rid18798623.denovo.118, whole genome shotgun sequence	5351..5910	enterobacteriales	IncX1	98.93	374 / 374	ABNNWK010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313485 SAMN36493639-rid18798623.denovo.147, whole genome shotgun sequence	202..575																																																avrA	ABNNWK010000043.1	39553..40422	99.655	870	0						
GCA_032502745.1_PDT001818176.1_genomic.fna	Salmonella_enterica	0.5228	66.341 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aadA1,aadA1,aac(6')-Iaa,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aadA1	99.75	792/792	ABNNWM010000014.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313483 SAMN36493635-rid18798613.denovo.014, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNWM010000014.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313483 SAMN36493635-rid18798613.denovo.014, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNNWM010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313483 SAMN36493635-rid18798613.denovo.061, whole genome shotgun sequence	12571..13008	Amikacin, Tobramycin	NC_003197	aac(3)-IV	100	777/777	ABNNWM010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313483 SAMN36493635-rid18798613.denovo.134, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNNWM010000161.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313483 SAMN36493635-rid18798613.guided.074, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNWM010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313483 SAMN36493635-rid18798613.guided.098, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNWM010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313483 SAMN36493635-rid18798613.guided.098, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(3)-IV	100	777/777	ABNNWM010000165.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313483 SAMN36493635-rid18798613.guided.141, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNNWM010000014.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313483 SAMN36493635-rid18798613.denovo.014, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNWM010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313483 SAMN36493635-rid18798613.guided.098, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNNWM010000014.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313483 SAMN36493635-rid18798613.denovo.014, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNWM010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313483 SAMN36493635-rid18798613.guided.110, whole genome shotgun sequence	4045..5244	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNWM010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313483 SAMN36493635-rid18798613.denovo.115, whole genome shotgun sequence	2146..2705																																																						avrA	ABNNWM010000022.1	39430..40299	99.655	870	0						
GCA_032502765.1_PDT001818175.1_genomic.fna	Salmonella_enterica	0.5212	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNWN010000001.1 Salmonella enterica strain PNUSAS363074 SAMN36493638-rid18798603.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNWN010000029.1 Salmonella enterica strain PNUSAS363074 SAMN36493638-rid18798603.guided.21, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNWN010000017.1 Salmonella enterica strain PNUSAS363074 SAMN36493638-rid18798603.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNNWN010000019.1 Salmonella enterica strain PNUSAS363074 SAMN36493638-rid18798603.denovo.22, whole genome shotgun sequence	3396..3657																																																avrA	ABNNWN010000002.1	553635..554504	99.54	870	0						
GCA_032502795.1_PDT001818174.1_genomic.fna	Salmonella_enterica	0.523	49.838 KB	32	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNWO010000009.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313489 SAMN36493641-rid18798173.denovo.009, whole genome shotgun sequence	75752..76189	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNNWO010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313489 SAMN36493641-rid18798173.denovo.115, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNWO010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313489 SAMN36493641-rid18798173.denovo.115, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNNWO010000196.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313489 SAMN36493641-rid18798173.guided.098, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNNWO010000197.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313489 SAMN36493641-rid18798173.guided.147, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNWO010000197.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313489 SAMN36493641-rid18798173.guided.147, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNNWO010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313489 SAMN36493641-rid18798173.denovo.115, whole genome shotgun sequence	8679..9892	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNNWO010000198.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313489 SAMN36493641-rid18798173.guided.156, whole genome shotgun sequence	67..1280	Chloramphenicol, Florfenicol	AF118107	dfrA14	100	474/474	ABNNWO010000149.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313489 SAMN36493641-rid18798173.denovo.153, whole genome shotgun sequence	65..538	Trimethoprim	AF393510	dfrA14	100	474/474	ABNNWO010000199.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313489 SAMN36493641-rid18798173.guided.162, whole genome shotgun sequence	96..569	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNWO010000138.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313489 SAMN36493641-rid18798173.denovo.141, whole genome shotgun sequence	2137..2696																																																						avrA	ABNNWO010000015.1	61526..62395	99.655	870	0						
GCA_032502845.1_PDT001818172.1_genomic.fna	Salmonella_enterica	0.5213	304.378 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNWQ010000003.1 Salmonella enterica strain PNUSAS363320 SAMN36493642-rid18798593.denovo.03, whole genome shotgun sequence	239131..239568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNWQ010000035.1 Salmonella enterica strain PNUSAS363320 SAMN36493642-rid18798593.guided.26, whole genome shotgun sequence	3729..4166	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNWQ010000020.1 Salmonella enterica strain PNUSAS363320 SAMN36493642-rid18798593.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNNWQ010000020.1 Salmonella enterica strain PNUSAS363320 SAMN36493642-rid18798593.denovo.20, whole genome shotgun sequence	21950..22211																																																avrA	ABNNWQ010000001.1	585465..586334	99.54	870	0						
GCA_032502855.1_PDT001818173.1_genomic.fna	Salmonella_enterica	0.521	158.447 KB	9	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNWP010000001.1 Salmonella enterica strain PNUSAS363067 SAMN36493654-rid18798163.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNWP010000053.1 Salmonella enterica strain PNUSAS363067 SAMN36493654-rid18798163.guided.36, whole genome shotgun sequence	8009..8446	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNNWP010000026.1 Salmonella enterica strain PNUSAS363067 SAMN36493654-rid18798163.denovo.26, whole genome shotgun sequence	2806..3339																																																						avrA	ABNNWP010000006.1	153640..154509	99.425	870	0						
GCA_032502945.1_PDT001818170.1_genomic.fna	Salmonella_enterica	0.5236	41.619 KB	37	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNWT010000014.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.denovo.014, whole genome shotgun sequence	48246..48683	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNWT010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.denovo.072, whole genome shotgun sequence	22730..23521	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNWT010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.denovo.072, whole genome shotgun sequence	22730..23521	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNNWT010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.denovo.161, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNWT010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.denovo.161, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNNWT010000236.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.guided.108, whole genome shotgun sequence	14211..14648	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNWT010000239.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.guided.129, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNWT010000239.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.guided.129, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNNWT010000242.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.guided.183, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNWT010000242.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.guided.183, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNNWT010000172.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.denovo.177, whole genome shotgun sequence	1622..2835	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNNWT010000241.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.guided.178, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNNWT010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.denovo.072, whole genome shotgun sequence	21386..22225	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNWT010000239.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.guided.129, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNNWT010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.denovo.072, whole genome shotgun sequence	7670..8869	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNWT010000240.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.guided.153, whole genome shotgun sequence	1495..2694	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNWT010000165.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.denovo.170, whole genome shotgun sequence	101..574	Trimethoprim	AF393510	dfrA14	100	474/474	ABNNWT010000243.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.guided.188, whole genome shotgun sequence	132..605	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNWT010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313583 SAMN36493628-rid18798573.denovo.157, whole genome shotgun sequence	2173..2732																																																						avrA	ABNNWT010000013.1	61404..62273	99.655	870	0						
GCA_032502965.1_PDT001818171.1_genomic.fna	Salmonella_enterica	0.5211	266.601 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNWR010000001.1 Salmonella enterica strain PNUSAS363080 SAMN36493634-rid18798583.denovo.01, whole genome shotgun sequence	424317..424754	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNWR010000031.1 Salmonella enterica strain PNUSAS363080 SAMN36493634-rid18798583.guided.18, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNWR010000002.1	145182..146051	99.31	870	0						
GCA_032502985.1_PDT001818169.1_genomic.fna	Salmonella_enterica	0.522	52.442 KB	31	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFII(pSE11),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNWS010000020.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313480 SAMN36493629-rid18798563.denovo.020, whole genome shotgun sequence	12378..12815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNWS010000222.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313480 SAMN36493629-rid18798563.guided.084, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNNWS010000100.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313480 SAMN36493629-rid18798563.denovo.102, whole genome shotgun sequence	1162..1421	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNNWS010000136.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313480 SAMN36493629-rid18798563.denovo.139, whole genome shotgun sequence	4397..4538		enterobacteriales	IncX1	100	373 / 373	ABNNWS010000158.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313480 SAMN36493629-rid18798563.denovo.161, whole genome shotgun sequence	2153..2525																																									avrA	ABNNWS010000042.1	39484..40353	99.655	870	0						
GCA_032503025.1_PDT001818167.1_genomic.fna	Salmonella_enterica	0.5232	53.719 KB	27	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNNWV010000021.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313582 SAMN36493627-rid18798553.denovo.021, whole genome shotgun sequence	11316..11753	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNWV010000112.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313582 SAMN36493627-rid18798553.denovo.115, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNNWV010000112.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313582 SAMN36493627-rid18798553.denovo.115, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNNWV010000112.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313582 SAMN36493627-rid18798553.denovo.115, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNNWV010000112.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313582 SAMN36493627-rid18798553.denovo.115, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNNWV010000112.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313582 SAMN36493627-rid18798553.denovo.115, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNNWV010000150.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313582 SAMN36493627-rid18798553.guided.075, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNWV010000152.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313582 SAMN36493627-rid18798553.guided.114, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNNWV010000152.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313582 SAMN36493627-rid18798553.guided.114, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNNWV010000152.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313582 SAMN36493627-rid18798553.guided.114, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNNWV010000152.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313582 SAMN36493627-rid18798553.guided.114, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNNWV010000152.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313582 SAMN36493627-rid18798553.guided.114, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNNWV010000113.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313582 SAMN36493627-rid18798553.denovo.117, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNWV010000153.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313582 SAMN36493627-rid18798553.guided.116, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNWV010000017.1	39546..40415	99.655	870	0						
GCA_032503045.1_PDT001818168.1_genomic.fna	Salmonella_enterica	0.5216	70.422 KB	23	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNWU010000025.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313580 SAMN36493630-rid18798153.denovo.025, whole genome shotgun sequence	12484..12921	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNWU010000161.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313580 SAMN36493630-rid18798153.guided.096, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNNWU010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313580 SAMN36493630-rid18798153.denovo.080, whole genome shotgun sequence	4504..4763	enterobacteriales	IncX1	100	373 / 373	ABNNWU010000118.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313580 SAMN36493630-rid18798153.denovo.121, whole genome shotgun sequence	2153..2525																																																avrA	ABNNWU010000038.1	39484..40353	99.655	870	0						
GCA_032503105.1_PDT001818166.1_genomic.fna	Salmonella_enterica	0.5215	56.925 KB	26	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNWW010000019.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313581 SAMN36493626-rid18798543.denovo.019, whole genome shotgun sequence	12396..12833	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNWW010000189.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313581 SAMN36493626-rid18798543.guided.094, whole genome shotgun sequence	14142..14579	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNNWW010000083.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313581 SAMN36493626-rid18798543.denovo.084, whole genome shotgun sequence	4655..4914	enterobacteriales	IncX1	100	373 / 373	ABNNWW010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313581 SAMN36493626-rid18798543.denovo.144, whole genome shotgun sequence	2732..3104																																																avrA	ABNNWW010000032.1	39484..40353	99.655	870	0						
GCA_032503135.1_PDT001818165.1_genomic.fna	Salmonella_enterica	0.5227	75.998 KB	21	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNWX010000022.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313579 SAMN36493625-rid18798533.denovo.022, whole genome shotgun sequence	62389..62826	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNWX010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313579 SAMN36493625-rid18798533.denovo.058, whole genome shotgun sequence	22919..23710	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNWX010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313579 SAMN36493625-rid18798533.denovo.058, whole genome shotgun sequence	22919..23710	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNNWX010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313579 SAMN36493625-rid18798533.guided.068, whole genome shotgun sequence	7072..7509	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNWX010000143.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313579 SAMN36493625-rid18798533.guided.086, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNWX010000143.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313579 SAMN36493625-rid18798533.guided.086, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNNWX010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313579 SAMN36493625-rid18798533.denovo.058, whole genome shotgun sequence	21575..22414	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNWX010000143.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313579 SAMN36493625-rid18798533.guided.086, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNNWX010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313579 SAMN36493625-rid18798533.denovo.058, whole genome shotgun sequence	7859..9058	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNWX010000144.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313579 SAMN36493625-rid18798533.guided.099, whole genome shotgun sequence	3406..4605	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNWX010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313579 SAMN36493625-rid18798533.denovo.098, whole genome shotgun sequence	5329..5888																																																						avrA	ABNNWX010000012.1	105438..106307	99.655	870	0						
GCA_032503175.1_PDT001818164.1_genomic.fna	Salmonella_enterica	0.5223	108.508 KB	13	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNWY010000014.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313575 SAMN36493622-rid18798523.denovo.14, whole genome shotgun sequence	90398..90835	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNWY010000092.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313575 SAMN36493622-rid18798523.guided.45, whole genome shotgun sequence	15447..15884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNNWY010000068.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313575 SAMN36493622-rid18798523.denovo.72, whole genome shotgun sequence	557..687	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNNWY010000046.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313575 SAMN36493622-rid18798523.denovo.49, whole genome shotgun sequence	4244..4385																																																											
GCA_032503225.1_PDT001818163.1_genomic.fna	Salmonella_enterica	0.5225	53.314 KB	28	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNWZ010000062.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS22313546 SAMN36493612-rid18798143.denovo.062, whole genome shotgun sequence	11354..11791	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNWZ010000178.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS22313546 SAMN36493612-rid18798143.guided.108, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNWZ010000010.1	81620..82489	99.77	870	0						
GCA_032503245.1_PDT001818161.1_genomic.fna	Salmonella_enterica	0.5234	52.739 KB	27	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNXB010000058.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS22313574 SAMN36493615-rid18798503.denovo.059, whole genome shotgun sequence	11655..12092	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNXB010000183.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS22313574 SAMN36493615-rid18798503.guided.058, whole genome shotgun sequence	15238..15675	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032503335.1_PDT001818158.1_genomic.fna	Salmonella_enterica	0.5209	71.879 KB	20	aroC_180,dnaN_161,hemD_132,hisD_21,purE_12,sucA_13,thrA_4	532	-:d:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_180	dnaN	100	100	dnaN_161	hemD	100	100	hemD_132	hisD	100	100	hisD_21	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	d	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:d:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNXD010000051.1 Salmonella enterica subsp. enterica serovar Barranquilla strain FSIS22313548 SAMN36493614-rid18798133.denovo.051, whole genome shotgun sequence	12516..12953	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNXD010000158.1 Salmonella enterica subsp. enterica serovar Barranquilla strain FSIS22313548 SAMN36493614-rid18798133.guided.077, whole genome shotgun sequence	14812..15249	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNXD010000010.1	95187..96056	99.54	870	0						
GCA_032503385.1_PDT001818160.1_genomic.fna	Salmonella_enterica	0.5231	47.043 KB	34	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNXC010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313578 SAMN36493624-rid18798493.denovo.069, whole genome shotgun sequence	11344..11781	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNXC010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313578 SAMN36493624-rid18798493.denovo.086, whole genome shotgun sequence	18447..19238	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNXC010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313578 SAMN36493624-rid18798493.denovo.086, whole genome shotgun sequence	18447..19238	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNNXC010000205.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313578 SAMN36493624-rid18798493.guided.118, whole genome shotgun sequence	330..767	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNXC010000206.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313578 SAMN36493624-rid18798493.guided.146, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNXC010000206.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313578 SAMN36493624-rid18798493.guided.146, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNNXC010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313578 SAMN36493624-rid18798493.denovo.086, whole genome shotgun sequence	17103..17942	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNXC010000206.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313578 SAMN36493624-rid18798493.guided.146, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNNXC010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313578 SAMN36493624-rid18798493.denovo.086, whole genome shotgun sequence	3387..4586	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNXC010000207.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313578 SAMN36493624-rid18798493.guided.169, whole genome shotgun sequence	34..1233	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNXC010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313578 SAMN36493624-rid18798493.denovo.159, whole genome shotgun sequence	973..1532																																																						avrA	ABNNXC010000014.1	61126..61995	99.655	870	0						
GCA_032503425.1_PDT001818157.1_genomic.fna	Salmonella_enterica	0.5229	40.345 KB	39	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	Col(pHAD28),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNXE010000059.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313547 SAMN36493613-rid18798473.denovo.059, whole genome shotgun sequence	14115..14552	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.34	410/438	ABNNXE010000235.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313547 SAMN36493613-rid18798473.guided.193, whole genome shotgun sequence	1..410	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNNXE010000161.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313547 SAMN36493613-rid18798473.denovo.161, whole genome shotgun sequence	186..316	enterobacteriales	IncX1	98.93	374 / 374	ABNNXE010000224.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313547 SAMN36493613-rid18798473.denovo.231, whole genome shotgun sequence	204..577																																																avrA	ABNNXE010000035.1	43550..44419	99.54	870	0						
GCA_032503445.1_PDT001818142.1_genomic.fna	Salmonella_enterica	0.5215	449.221 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNXG010000001.1 Salmonella enterica strain PNUSAS363276 SAMN36472752-rid18798093.denovo.01, whole genome shotgun sequence	477414..477851	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNXG010000025.1 Salmonella enterica strain PNUSAS363276 SAMN36472752-rid18798093.guided.18, whole genome shotgun sequence	19526..19963	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNXG010000010.1	168995..169863	99.195	870	0						
GCA_032503505.1_PDT001818141.1_genomic.fna	Salmonella_enterica	0.523	263.61 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNXH010000001.1 Salmonella enterica strain PNUSAS363271 SAMN36472755-rid18798083.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNXH010000037.1 Salmonella enterica strain PNUSAS363271 SAMN36472755-rid18798083.guided.29, whole genome shotgun sequence	213..650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNXH010000004.1	149923..150792	99.655	870	0						
GCA_032503565.1_PDT001818140.1_genomic.fna	Salmonella_enterica	0.5213	406.403 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNXI010000001.1 Salmonella enterica strain PNUSAS363280 SAMN36472754-rid18798073.denovo.01, whole genome shotgun sequence	293258..293695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNXI010000027.1 Salmonella enterica strain PNUSAS363280 SAMN36472754-rid18798073.guided.21, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNXI010000014.1 Salmonella enterica strain PNUSAS363280 SAMN36472754-rid18798073.denovo.14, whole genome shotgun sequence	9588..10230	enterobacteriales	IncFII(S)	100	262 / 262	ABNNXI010000014.1 Salmonella enterica strain PNUSAS363280 SAMN36472754-rid18798073.denovo.14, whole genome shotgun sequence	54222..54483																																																avrA	ABNNXI010000002.1	584136..585005	99.54	870	0						
GCA_032503605.1_PDT001818139.1_genomic.fna	Salmonella_enterica	0.518	271.152 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul3,sul2,sul3,tet(B),tet(B),dfrA1,dfrA1	0		3	Col(pHAD28),Col(pHAD28),IncHI2,IncHI2A	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNXJ010000001.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.denovo.01, whole genome shotgun sequence	673535..673972	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNXJ010000036.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.denovo.38, whole genome shotgun sequence	5184..6020	Streptomycin	M28829	aph(3'')-Ib	100	780/804	ABNNXJ010000036.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.denovo.38, whole genome shotgun sequence	6020..6799	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNNXJ010000068.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.guided.35, whole genome shotgun sequence	2074..2511	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNXJ010000069.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.guided.37, whole genome shotgun sequence	3388..4224	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNXJ010000069.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.guided.37, whole genome shotgun sequence	2585..3388	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNNXJ010000052.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.denovo.59, whole genome shotgun sequence	146..1006	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNNXJ010000074.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.guided.58, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNNXJ010000036.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.denovo.38, whole genome shotgun sequence	85..900	Sulfamethoxazole	AY034138	sul3	100	792/792	ABNNXJ010000043.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.denovo.47, whole genome shotgun sequence	636..1427	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNNXJ010000069.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.guided.37, whole genome shotgun sequence	1709..2524	Sulfamethoxazole	AY034138	sul3	100	792/792	ABNNXJ010000073.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.guided.55, whole genome shotgun sequence	498..1289	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNNXJ010000035.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.denovo.36, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNXJ010000072.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.guided.51, whole genome shotgun sequence	562..1767	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA1	100	474/474	ABNNXJ010000036.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.denovo.38, whole genome shotgun sequence	4690..5163	Trimethoprim	X00926	dfrA1	100	474/474	ABNNXJ010000069.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.guided.37, whole genome shotgun sequence	4245..4718	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNNXJ010000036.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.denovo.38, whole genome shotgun sequence	1427..1557	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNNXJ010000069.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.guided.37, whole genome shotgun sequence	1052..1182		enterobacteriales	IncHI2	100	327 / 327	ABNNXJ010000026.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.denovo.26, whole genome shotgun sequence	16990..17316		enterobacteriales	IncHI2A	99.52	630 / 630	ABNNXJ010000026.1 Salmonella enterica strain PNUSAS363278 SAMN36472753-rid18798063.denovo.26, whole genome shotgun sequence	26964..27593																																		avrA	ABNNXJ010000007.1	93865..94734	99.885	870	0						
GCA_032503645.1_PDT001818138.1_genomic.fna	Salmonella_enterica	0.5214	472.894 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_603	2783	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_603	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNNXK010000001.1 Salmonella enterica strain PNUSAS363269 SAMN36472750-rid18798053.denovo.01, whole genome shotgun sequence	714219..714656	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNNXK010000026.1 Salmonella enterica strain PNUSAS363269 SAMN36472750-rid18798053.guided.17, whole genome shotgun sequence	3021..3458	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNNXK010000010.1 Salmonella enterica strain PNUSAS363269 SAMN36472750-rid18798053.denovo.10, whole genome shotgun sequence	15830..15971																																																						avrA	ABNNXK010000006.1	140456..141325	99.54	870	0						
GCA_032503665.1_PDT001818137.1_genomic.fna	Salmonella_enterica	0.521	729.094 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	2	IncC,IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNNXL010000001.1 Salmonella enterica strain PNUSAS363270 SAMN36472751-rid18798043.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNXL010000013.1 Salmonella enterica strain PNUSAS363270 SAMN36472751-rid18798043.denovo.13, whole genome shotgun sequence	33294..34130	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNXL010000013.1 Salmonella enterica strain PNUSAS363270 SAMN36472751-rid18798043.denovo.13, whole genome shotgun sequence	32491..33294	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNNXL010000031.1 Salmonella enterica strain PNUSAS363270 SAMN36472751-rid18798043.guided.14, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNXL010000031.1 Salmonella enterica strain PNUSAS363270 SAMN36472751-rid18798043.guided.14, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	99.54	438/438	ABNNXL010000032.1 Salmonella enterica strain PNUSAS363270 SAMN36472751-rid18798043.guided.20, whole genome shotgun sequence	198..635	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNNXL010000013.1 Salmonella enterica strain PNUSAS363270 SAMN36472751-rid18798043.denovo.13, whole genome shotgun sequence	2126..3271	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNNXL010000031.1 Salmonella enterica strain PNUSAS363270 SAMN36472751-rid18798043.guided.14, whole genome shotgun sequence	33401..34546	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.27	1214/1215	ABNNXL010000013.1 Salmonella enterica strain PNUSAS363270 SAMN36472751-rid18798043.denovo.13, whole genome shotgun sequence	37266..38479	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNNXL010000034.1 Salmonella enterica strain PNUSAS363270 SAMN36472751-rid18798043.guided.25, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNNXL010000013.1 Salmonella enterica strain PNUSAS363270 SAMN36472751-rid18798043.denovo.13, whole genome shotgun sequence	31615..32430	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNNXL010000031.1 Salmonella enterica strain PNUSAS363270 SAMN36472751-rid18798043.guided.14, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNNXL010000013.1 Salmonella enterica strain PNUSAS363270 SAMN36472751-rid18798043.denovo.13, whole genome shotgun sequence	35391..36665	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNNXL010000031.1 Salmonella enterica strain PNUSAS363270 SAMN36472751-rid18798043.guided.14, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncC	100	417 / 417	ABNNXL010000011.1 Salmonella enterica strain PNUSAS363270 SAMN36472751-rid18798043.denovo.11, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNNXL010000012.1 Salmonella enterica strain PNUSAS363270 SAMN36472751-rid18798043.denovo.12, whole genome shotgun sequence	15755..16288																																																avrA	ABNNXL010000002.1	561624..562494	99.656	871	0						
GCA_032503715.1_PDT001818136.1_genomic.fna	Salmonella_enterica	0.5211	490.04 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNXM010000001.1 Salmonella enterica strain PNUSAS363274 SAMN36471733-rid18798033.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNXM010000024.1 Salmonella enterica strain PNUSAS363274 SAMN36471733-rid18798033.guided.13, whole genome shotgun sequence	32110..32547	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNXM010000011.1 Salmonella enterica strain PNUSAS363274 SAMN36471733-rid18798033.denovo.12, whole genome shotgun sequence	47948..48590	enterobacteriales	IncFII(S)	100	262 / 262	ABNNXM010000011.1 Salmonella enterica strain PNUSAS363274 SAMN36471733-rid18798033.denovo.12, whole genome shotgun sequence	3704..3965																																																avrA	ABNNXM010000002.1	505461..506330	99.54	870	0						
GCA_032503725.1_PDT001818135.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNXN010000001.1 Salmonella enterica strain PNUSAS363277 SAMN36471735-rid18798023.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNXN010000026.1 Salmonella enterica strain PNUSAS363277 SAMN36471735-rid18798023.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNXN010000012.1 Salmonella enterica strain PNUSAS363277 SAMN36471735-rid18798023.denovo.14, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNNXN010000016.1 Salmonella enterica strain PNUSAS363277 SAMN36471735-rid18798023.denovo.19, whole genome shotgun sequence	3395..3656																																																avrA	ABNNXN010000002.1	553636..554505	99.54	870	0						
GCA_032503775.1_PDT001818134.1_genomic.fna	Salmonella_enterica	0.5207	478.5 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		2	IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNXO010000001.1 Salmonella enterica strain PNUSAS363273 SAMN36471731-rid18798013.denovo.01, whole genome shotgun sequence	774552..774989	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNXO010000015.1 Salmonella enterica strain PNUSAS363273 SAMN36471731-rid18798013.denovo.19, whole genome shotgun sequence	9260..10096	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNXO010000015.1 Salmonella enterica strain PNUSAS363273 SAMN36471731-rid18798013.denovo.19, whole genome shotgun sequence	10096..10899	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNNXO010000028.1 Salmonella enterica strain PNUSAS363273 SAMN36471731-rid18798013.guided.15, whole genome shotgun sequence	13545..13982	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNXO010000030.1 Salmonella enterica strain PNUSAS363273 SAMN36471731-rid18798013.guided.18, whole genome shotgun sequence	7213..8049	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNXO010000030.1 Salmonella enterica strain PNUSAS363273 SAMN36471731-rid18798013.guided.18, whole genome shotgun sequence	6410..7213	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNNXO010000019.1 Salmonella enterica strain PNUSAS363273 SAMN36471731-rid18798013.denovo.24, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNNXO010000031.1 Salmonella enterica strain PNUSAS363273 SAMN36471731-rid18798013.guided.23, whole genome shotgun sequence	3944..4804	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNNXO010000015.1 Salmonella enterica strain PNUSAS363273 SAMN36471731-rid18798013.denovo.19, whole genome shotgun sequence	10960..11775	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNNXO010000030.1 Salmonella enterica strain PNUSAS363273 SAMN36471731-rid18798013.guided.18, whole genome shotgun sequence	5534..6349	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNNXO010000015.1 Salmonella enterica strain PNUSAS363273 SAMN36471731-rid18798013.denovo.19, whole genome shotgun sequence	15288..16487	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNXO010000030.1 Salmonella enterica strain PNUSAS363273 SAMN36471731-rid18798013.guided.18, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncN	100	514 / 514	ABNNXO010000017.1 Salmonella enterica strain PNUSAS363273 SAMN36471731-rid18798013.denovo.21, whole genome shotgun sequence	859..1372	enterobacteriales	IncX1	98.66	374 / 374	ABNNXO010000011.1 Salmonella enterica strain PNUSAS363273 SAMN36471731-rid18798013.denovo.11, whole genome shotgun sequence	6057..6430																																																avrA	ABNNXO010000002.1	553054..553923	99.54	870	0						
GCA_032503825.1_PDT001818133.1_genomic.fna	Salmonella_enterica	0.5213	180.914 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNXP010000002.1 Salmonella enterica strain PNUSAS363272 SAMN36471732-rid18798003.denovo.02, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNNXP010000051.1 Salmonella enterica strain PNUSAS363272 SAMN36471732-rid18798003.denovo.58, whole genome shotgun sequence	17..796	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNNXP010000060.1 Salmonella enterica strain PNUSAS363272 SAMN36471732-rid18798003.guided.43, whole genome shotgun sequence	166..603	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNNXP010000065.1 Salmonella enterica strain PNUSAS363272 SAMN36471732-rid18798003.guided.56, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNNXP010000041.1 Salmonella enterica strain PNUSAS363272 SAMN36471732-rid18798003.denovo.42, whole genome shotgun sequence	8411..9277	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNNXP010000064.1 Salmonella enterica strain PNUSAS363272 SAMN36471732-rid18798003.guided.55, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNNXP010000041.1 Salmonella enterica strain PNUSAS363272 SAMN36471732-rid18798003.denovo.42, whole genome shotgun sequence	5451..6665	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNNXP010000061.1 Salmonella enterica strain PNUSAS363272 SAMN36471732-rid18798003.guided.47, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNNXP010000063.1 Salmonella enterica strain PNUSAS363272 SAMN36471732-rid18798003.guided.53, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNNXP010000041.1 Salmonella enterica strain PNUSAS363272 SAMN36471732-rid18798003.denovo.42, whole genome shotgun sequence	3339..4514	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNNXP010000061.1 Salmonella enterica strain PNUSAS363272 SAMN36471732-rid18798003.guided.47, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	Col440I	92.04	113 / 114	ABNNXP010000046.1 Salmonella enterica strain PNUSAS363272 SAMN36471732-rid18798003.denovo.49, whole genome shotgun sequence	1334..1446	enterobacteriales	IncFIB(S)	100	643 / 643	ABNNXP010000024.1 Salmonella enterica strain PNUSAS363272 SAMN36471732-rid18798003.denovo.24, whole genome shotgun sequence	36050..36692		enterobacteriales	IncFII(S)	100	262 / 262	ABNNXP010000024.1 Salmonella enterica strain PNUSAS363272 SAMN36471732-rid18798003.denovo.24, whole genome shotgun sequence	51777..52038																																									avrA	ABNNXP010000004.1	181828..182697	99.885	870	0						
GCA_032503845.1_PDT001818132.1_genomic.fna	Salmonella_enterica	0.5217	443.347 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNXQ010000001.1 Salmonella enterica strain PNUSAS363279 SAMN36471730-rid18797993.denovo.01, whole genome shotgun sequence	477614..478051	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNXQ010000023.1 Salmonella enterica strain PNUSAS363279 SAMN36471730-rid18797993.guided.17, whole genome shotgun sequence	2026..2463	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNXQ010000010.1	168995..169863	99.195	870	0						
GCA_032503945.1_PDT001818131.1_genomic.fna	Salmonella_enterica	0.5215	341.264 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNXR010000004.1 Salmonella enterica strain PNUSAS363275 SAMN36471734-rid18797983.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNXR010000042.1 Salmonella enterica strain PNUSAS363275 SAMN36471734-rid18797983.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	98.96	193 / 193	ABNNXR010000031.1 Salmonella enterica strain PNUSAS363275 SAMN36471734-rid18797983.denovo.34, whole genome shotgun sequence	805..997	enterobacteriales	IncFIB(S)	100	643 / 643	ABNNXR010000015.1 Salmonella enterica strain PNUSAS363275 SAMN36471734-rid18797983.denovo.17, whole genome shotgun sequence	44772..45414		enterobacteriales	IncFII(S)	100	262 / 262	ABNNXR010000015.1 Salmonella enterica strain PNUSAS363275 SAMN36471734-rid18797983.denovo.17, whole genome shotgun sequence	29426..29687																																									avrA	ABNNXR010000001.1	446747..447615	100	869	0						
GCA_032503965.1_PDT001818129.1_genomic.fna	Salmonella_enterica	0.5214	406.452 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNXT010000001.1 Salmonella enterica strain PNUSAS363238 SAMN36471504-rid18797963.denovo.01, whole genome shotgun sequence	774556..774993	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNXT010000024.1 Salmonella enterica strain PNUSAS363238 SAMN36471504-rid18797963.guided.17, whole genome shotgun sequence	2030..2467	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNNXT010000016.1 Salmonella enterica strain PNUSAS363238 SAMN36471504-rid18797963.denovo.16, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNNXT010000018.1 Salmonella enterica strain PNUSAS363238 SAMN36471504-rid18797963.denovo.20, whole genome shotgun sequence	3394..3655																																																avrA	ABNNXT010000002.1	553553..554422	99.54	870	0						
GCA_032503985.1_PDT001818128.1_genomic.fna	Salmonella_enterica	0.5214	478.497 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNXU010000001.1 Salmonella enterica strain PNUSAS363254 SAMN36471500-rid18797953.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNXU010000026.1 Salmonella enterica strain PNUSAS363254 SAMN36471500-rid18797953.guided.19, whole genome shotgun sequence	6126..6563	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNXU010000015.1 Salmonella enterica strain PNUSAS363254 SAMN36471500-rid18797953.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNNXU010000015.1 Salmonella enterica strain PNUSAS363254 SAMN36471500-rid18797953.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNNXU010000002.1	553083..553952	99.54	870	0						
GCA_032504015.1_PDT001818127.1_genomic.fna	Salmonella_enterica	0.5217	435.57 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNXV010000002.1 Salmonella enterica strain PNUSAS363264 SAMN36471501-rid18797943.denovo.02, whole genome shotgun sequence	477381..477818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNXV010000026.1 Salmonella enterica strain PNUSAS363264 SAMN36471501-rid18797943.guided.19, whole genome shotgun sequence	12479..12916	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNXV010000009.1	150695..151565	99.196	871	0						
GCA_032504075.1_PDT001818126.1_genomic.fna	Salmonella_enterica	0.522	191.426 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNXX010000003.1 Salmonella enterica strain PNUSAS363255 SAMN36471502-rid18797933.denovo.03, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNXX010000050.1 Salmonella enterica strain PNUSAS363255 SAMN36471502-rid18797933.guided.37, whole genome shotgun sequence	3209..3646	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNXX010000002.1	207907..208775	99.77	870	0						
GCA_032504105.1_PDT001818125.1_genomic.fna	Salmonella_enterica	0.5212	421.394 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNXW010000001.1 Salmonella enterica strain PNUSAS363252 SAMN36471485-rid18797923.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNXW010000027.1 Salmonella enterica strain PNUSAS363252 SAMN36471485-rid18797923.guided.21, whole genome shotgun sequence	9796..10233	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNXW010000013.1 Salmonella enterica strain PNUSAS363252 SAMN36471485-rid18797923.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNNXW010000013.1 Salmonella enterica strain PNUSAS363252 SAMN36471485-rid18797923.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNNXW010000002.1	553398..554267	99.54	870	0						
GCA_032504145.1_PDT001818124.1_genomic.fna	Salmonella_enterica	0.5214	480.935 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNXY010000001.1 Salmonella enterica strain PNUSAS363244 SAMN36471487-rid18797913.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNXY010000025.1 Salmonella enterica strain PNUSAS363244 SAMN36471487-rid18797913.guided.17, whole genome shotgun sequence	7218..7655	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNXY010000014.1 Salmonella enterica strain PNUSAS363244 SAMN36471487-rid18797913.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNNXY010000014.1 Salmonella enterica strain PNUSAS363244 SAMN36471487-rid18797913.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNNXY010000002.1	553077..553946	99.54	870	0						
GCA_032504165.1_PDT001818122.1_genomic.fna	Salmonella_enterica	0.5203	263.212 KB	6	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNYA010000003.1 Salmonella enterica strain PNUSAS363258 SAMN36471495-rid18797893.denovo.03, whole genome shotgun sequence	37925..38362	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNNYA010000034.1 Salmonella enterica strain PNUSAS363258 SAMN36471495-rid18797893.guided.25, whole genome shotgun sequence	172..609	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNYA010000001.1	506359..507228	99.31	870	0						
GCA_032504185.1_PDT001818123.1_genomic.fna	Salmonella_enterica	0.5211	389.22 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNXZ010000003.1 Salmonella enterica strain PNUSAS363251 SAMN36471490-rid18797903.denovo.03, whole genome shotgun sequence	149347..149784	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNXZ010000024.1 Salmonella enterica strain PNUSAS363251 SAMN36471490-rid18797903.guided.21, whole genome shotgun sequence	7579..8016	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032504275.1_PDT001818121.1_genomic.fna	Salmonella_enterica	0.5211	406.224 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNYB010000003.1 Salmonella enterica strain PNUSAS363253 SAMN36471491-rid18797883.denovo.03, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNYB010000028.1 Salmonella enterica strain PNUSAS363253 SAMN36471491-rid18797883.guided.20, whole genome shotgun sequence	22324..22761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNYB010000018.1 Salmonella enterica strain PNUSAS363253 SAMN36471491-rid18797883.denovo.18, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNNYB010000018.1 Salmonella enterica strain PNUSAS363253 SAMN36471491-rid18797883.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABNNYB010000001.1	584920..585789	99.54	870	0						
GCA_032504315.1_PDT001818120.1_genomic.fna	Salmonella_enterica	0.5225	398.318 KB	5	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNNYC010000005.1 Salmonella enterica strain PNUSAS363243 SAMN36471482-rid18797873.denovo.05, whole genome shotgun sequence	252456..252893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNYC010000023.1 Salmonella enterica strain PNUSAS363243 SAMN36471482-rid18797873.denovo.24, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNNYC010000023.1 Salmonella enterica strain PNUSAS363243 SAMN36471482-rid18797873.denovo.24, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNNYC010000023.1 Salmonella enterica strain PNUSAS363243 SAMN36471482-rid18797873.denovo.24, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNNYC010000023.1 Salmonella enterica strain PNUSAS363243 SAMN36471482-rid18797873.denovo.24, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNNYC010000023.1 Salmonella enterica strain PNUSAS363243 SAMN36471482-rid18797873.denovo.24, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNNYC010000035.1 Salmonella enterica strain PNUSAS363243 SAMN36471482-rid18797873.guided.22, whole genome shotgun sequence	2186..2623	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNYC010000036.1 Salmonella enterica strain PNUSAS363243 SAMN36471482-rid18797873.guided.25, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNNYC010000036.1 Salmonella enterica strain PNUSAS363243 SAMN36471482-rid18797873.guided.25, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNNYC010000036.1 Salmonella enterica strain PNUSAS363243 SAMN36471482-rid18797873.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNNYC010000036.1 Salmonella enterica strain PNUSAS363243 SAMN36471482-rid18797873.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNNYC010000036.1 Salmonella enterica strain PNUSAS363243 SAMN36471482-rid18797873.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNNYC010000024.1 Salmonella enterica strain PNUSAS363243 SAMN36471482-rid18797873.denovo.26, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNYC010000038.1 Salmonella enterica strain PNUSAS363243 SAMN36471482-rid18797873.guided.29, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNNYC010000028.1 Salmonella enterica strain PNUSAS363243 SAMN36471482-rid18797873.denovo.33, whole genome shotgun sequence	805..997																																																						avrA	ABNNYC010000002.1	422331..423200	99.655	870	0						
GCA_032504345.1_PDT001818117.1_genomic.fna	Salmonella_enterica	0.5213	406.247 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNYF010000001.1 Salmonella enterica strain PNUSAS363256 SAMN36471493-rid18797843.denovo.01, whole genome shotgun sequence	293249..293686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNYF010000028.1 Salmonella enterica strain PNUSAS363256 SAMN36471493-rid18797843.guided.21, whole genome shotgun sequence	5881..6318	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNYF010000018.1 Salmonella enterica strain PNUSAS363256 SAMN36471493-rid18797843.denovo.18, whole genome shotgun sequence	48112..48754	enterobacteriales	IncFII(S)	100	262 / 262	ABNNYF010000018.1 Salmonella enterica strain PNUSAS363256 SAMN36471493-rid18797843.denovo.18, whole genome shotgun sequence	3859..4120																																																avrA	ABNNYF010000003.1	140720..141589	99.54	870	0						
GCA_032504365.1_PDT001818119.1_genomic.fna	Salmonella_enterica	0.5213	421.407 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		3	Col(pHAD28),Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNYD010000001.1 Salmonella enterica strain PNUSAS363242 SAMN36471481-rid18797863.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNYD010000026.1 Salmonella enterica strain PNUSAS363242 SAMN36471481-rid18797863.guided.18, whole genome shotgun sequence	3542..3979	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNNYD010000019.1 Salmonella enterica strain PNUSAS363242 SAMN36471481-rid18797863.denovo.23, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNNYD010000028.1 Salmonella enterica strain PNUSAS363242 SAMN36471481-rid18797863.guided.22, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNNYD010000019.1 Salmonella enterica strain PNUSAS363242 SAMN36471481-rid18797863.denovo.23, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNNYD010000028.1 Salmonella enterica strain PNUSAS363242 SAMN36471481-rid18797863.guided.22, whole genome shotgun sequence	2416..2546		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNYD010000014.1 Salmonella enterica strain PNUSAS363242 SAMN36471481-rid18797863.denovo.14, whole genome shotgun sequence	48331..48973		enterobacteriales	IncFII(S)	100	262 / 262	ABNNYD010000014.1 Salmonella enterica strain PNUSAS363242 SAMN36471481-rid18797863.denovo.14, whole genome shotgun sequence	4078..4339																																		avrA	ABNNYD010000002.1	552788..553657	99.54	870	0						
GCA_032504405.1_PDT001818118.1_genomic.fna	Salmonella_enterica	0.5214	405.993 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNYE010000003.1 Salmonella enterica strain PNUSAS363248 SAMN36471486-rid18797853.denovo.03, whole genome shotgun sequence	162454..162891	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNYE010000030.1 Salmonella enterica strain PNUSAS363248 SAMN36471486-rid18797853.guided.26, whole genome shotgun sequence	361..798	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNYE010000018.1 Salmonella enterica strain PNUSAS363248 SAMN36471486-rid18797853.denovo.18, whole genome shotgun sequence	48652..49294	enterobacteriales	IncFII(S)	100	262 / 262	ABNNYE010000018.1 Salmonella enterica strain PNUSAS363248 SAMN36471486-rid18797853.denovo.18, whole genome shotgun sequence	4399..4660																																																avrA	ABNNYE010000001.1	553076..553945	99.54	870	0						
GCA_032504435.1_PDT001818116.1_genomic.fna	Salmonella_enterica	0.5213	421.394 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNYG010000004.1 Salmonella enterica strain PNUSAS363245 SAMN36471489-rid18797833.denovo.04, whole genome shotgun sequence	162454..162891	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNYG010000029.1 Salmonella enterica strain PNUSAS363245 SAMN36471489-rid18797833.guided.20, whole genome shotgun sequence	78..515	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNYG010000015.1 Salmonella enterica strain PNUSAS363245 SAMN36471489-rid18797833.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNNYG010000015.1 Salmonella enterica strain PNUSAS363245 SAMN36471489-rid18797833.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNNYG010000001.1	553077..553946	99.54	870	0						
GCA_032504505.1_PDT001818115.1_genomic.fna	Salmonella_enterica	0.5213	421.396 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNYH010000004.1 Salmonella enterica strain PNUSAS363249 SAMN36471492-rid18797823.denovo.04, whole genome shotgun sequence	162494..162931	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNYH010000028.1 Salmonella enterica strain PNUSAS363249 SAMN36471492-rid18797823.guided.21, whole genome shotgun sequence	18253..18690	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNYH010000017.1 Salmonella enterica strain PNUSAS363249 SAMN36471492-rid18797823.denovo.17, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNNYH010000017.1 Salmonella enterica strain PNUSAS363249 SAMN36471492-rid18797823.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABNNYH010000001.1	553076..553945	99.54	870	0						
GCA_032504545.1_PDT001818113.1_genomic.fna	Salmonella_enterica	0.521	386.257 KB	5	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNNYI010000001.1 Salmonella enterica strain PNUSAS363261 SAMN36471499-rid18797803.denovo.01, whole genome shotgun sequence	562927..563364	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNNYI010000032.1 Salmonella enterica strain PNUSAS363261 SAMN36471499-rid18797803.guided.25, whole genome shotgun sequence	5317..5754	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNNYI010000019.1 Salmonella enterica strain PNUSAS363261 SAMN36471499-rid18797803.denovo.19, whole genome shotgun sequence	2465..2998																																																						avrA	ABNNYI010000002.1	149711..150580	99.54	870	0						
GCA_032504565.1_PDT001818112.1_genomic.fna	Salmonella_enterica	0.5214	299.748 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNYJ010000001.1 Salmonella enterica strain PNUSAS363257 SAMN36471494-rid18797793.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNYJ010000039.1 Salmonella enterica strain PNUSAS363257 SAMN36471494-rid18797793.guided.27, whole genome shotgun sequence	9138..9575	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNNYJ010000016.1 Salmonella enterica strain PNUSAS363257 SAMN36471494-rid18797793.denovo.16, whole genome shotgun sequence	32299..32440																																																						avrA	ABNNYJ010000003.1	218067..218935	99.77	870	0						
GCA_032504595.1_PDT001818111.1_genomic.fna	Salmonella_enterica	0.5215	207.444 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNYK010000001.1 Salmonella enterica strain PNUSAS363260 SAMN36471496-rid18797783.denovo.01, whole genome shotgun sequence	145253..145690	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNYK010000048.1 Salmonella enterica strain PNUSAS363260 SAMN36471496-rid18797783.guided.39, whole genome shotgun sequence	5660..6097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNYK010000003.1	207907..208775	99.77	870	0						
GCA_032504625.1_PDT001818110.1_genomic.fna	Salmonella_enterica	0.5214	469.977 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNYM010000001.1 Salmonella enterica strain PNUSAS363262 SAMN36471497-rid18797773.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNYM010000028.1 Salmonella enterica strain PNUSAS363262 SAMN36471497-rid18797773.guided.21, whole genome shotgun sequence	3542..3979	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNYM010000014.1 Salmonella enterica strain PNUSAS363262 SAMN36471497-rid18797773.denovo.14, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABNNYM010000014.1 Salmonella enterica strain PNUSAS363262 SAMN36471497-rid18797773.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNNYM010000007.1	174749..175618	99.54	870	0						
GCA_032504685.1_PDT001818109.1_genomic.fna	Salmonella_enterica	0.5205	406.13 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNYL010000001.1 Salmonella enterica strain PNUSAS363247 SAMN36471483-rid18797763.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNYL010000028.1 Salmonella enterica strain PNUSAS363247 SAMN36471483-rid18797763.guided.21, whole genome shotgun sequence	14756..15193	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNYL010000016.1 Salmonella enterica strain PNUSAS363247 SAMN36471483-rid18797763.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNNYL010000016.1 Salmonella enterica strain PNUSAS363247 SAMN36471483-rid18797763.denovo.16, whole genome shotgun sequence	5032..5293		enterobacteriales	IncX1	98.93	374 / 374	ABNNYL010000017.1 Salmonella enterica strain PNUSAS363247 SAMN36471483-rid18797763.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABNNYL010000002.1	553063..553932	99.54	870	0						
GCA_032504725.1_PDT001818107.1_genomic.fna	Salmonella_enterica	0.5209	284.993 KB	7	aroC_16,dnaN_2,hemD_95,hisD_117,purE_36,sucA_39,thrA_117	350	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_95	hisD	100	100	hisD_117	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_117	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNYP010000002.1 Salmonella enterica strain PNUSAS363259 SAMN36471498-rid18797743.denovo.02, whole genome shotgun sequence	37877..38314	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNYP010000042.1 Salmonella enterica strain PNUSAS363259 SAMN36471498-rid18797743.guided.28, whole genome shotgun sequence	13614..14051	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNNYP010000023.1 Salmonella enterica strain PNUSAS363259 SAMN36471498-rid18797743.denovo.23, whole genome shotgun sequence	5891..6424																																																						avrA	ABNNYP010000022.1	39465..40334	99.31	870	0						
GCA_032504745.1_PDT001818108.1_genomic.fna	Salmonella_enterica	0.5218	214.947 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNYN010000002.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.denovo.02, whole genome shotgun sequence	573719..574156	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNYN010000018.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.denovo.18, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNYN010000018.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.denovo.18, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNNYN010000042.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.denovo.46, whole genome shotgun sequence	3857..4882	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNYN010000042.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.denovo.46, whole genome shotgun sequence	5111..5887	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNNYN010000060.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.guided.35, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNYN010000060.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.guided.35, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNNYN010000061.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.guided.36, whole genome shotgun sequence	5614..6051	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNNYN010000064.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.guided.47, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNYN010000064.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.guided.47, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNNYN010000018.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.denovo.18, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNYN010000060.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.guided.35, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNNYN010000018.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.denovo.18, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNYN010000060.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.guided.35, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNYN010000041.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.denovo.45, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNNYN010000065.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.guided.55, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNYN010000033.1 Salmonella enterica strain PNUSAS363246 SAMN36471484-rid18797753.denovo.33, whole genome shotgun sequence	9109..9668																																																						avrA	ABNNYN010000016.1	93814..94683	99.655	870	0						
GCA_032504795.1_PDT001818105.1_genomic.fna	Salmonella_enterica	0.5216	363.645 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNYQ010000001.1 Salmonella enterica strain PNUSAS363267 SAMN36471475-rid18797723.denovo.01, whole genome shotgun sequence	560694..561131	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNYQ010000032.1 Salmonella enterica strain PNUSAS363267 SAMN36471475-rid18797723.guided.23, whole genome shotgun sequence	194..631	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNYQ010000012.1	95287..96155	99.195	870	0						
GCA_032504905.1_PDT001818103.1_genomic.fna	Salmonella_enterica	0.5223	335.928 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNYS010000001.1 Salmonella enterica strain PNUSAS363265 SAMN36471474-rid18797703.denovo.01, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNYS010000038.1 Salmonella enterica strain PNUSAS363265 SAMN36471474-rid18797703.guided.25, whole genome shotgun sequence	4176..4613	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNYS010000003.1	193259..194128	98.966	870	0						
GCA_032505065.1_PDT001818099.1_genomic.fna	Salmonella_enterica	0.5214	406.164 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNYW010000003.1 Salmonella enterica strain PNUSAS363268 SAMN36471339-rid18797663.denovo.03, whole genome shotgun sequence	162389..162826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNYW010000029.1 Salmonella enterica strain PNUSAS363268 SAMN36471339-rid18797663.guided.27, whole genome shotgun sequence	1002..1439	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNYW010000018.1 Salmonella enterica strain PNUSAS363268 SAMN36471339-rid18797663.denovo.18, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNNYW010000018.1 Salmonella enterica strain PNUSAS363268 SAMN36471339-rid18797663.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABNNYW010000001.1	553174..554043	99.54	870	0						
GCA_032505085.1_PDT001818098.1_genomic.fna	Salmonella_enterica	0.5216	278.112 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul2,tet(B),tet(B)	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNYX010000001.1 Salmonella enterica strain PNUSAS363263 SAMN36471337-rid18797653.denovo.01, whole genome shotgun sequence	482661..483098	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNNYX010000039.1 Salmonella enterica strain PNUSAS363263 SAMN36471337-rid18797653.denovo.41, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNYX010000039.1 Salmonella enterica strain PNUSAS363263 SAMN36471337-rid18797653.denovo.41, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNNYX010000060.1 Salmonella enterica strain PNUSAS363263 SAMN36471337-rid18797653.guided.51, whole genome shotgun sequence	1695..2531	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNYX010000060.1 Salmonella enterica strain PNUSAS363263 SAMN36471337-rid18797653.guided.51, whole genome shotgun sequence	892..1695	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNNYX010000062.1 Salmonella enterica strain PNUSAS363263 SAMN36471337-rid18797653.guided.55, whole genome shotgun sequence	135..572	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNNYX010000048.1 Salmonella enterica strain PNUSAS363263 SAMN36471337-rid18797653.denovo.54, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNNYX010000061.1 Salmonella enterica strain PNUSAS363263 SAMN36471337-rid18797653.guided.53, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNNYX010000043.1 Salmonella enterica strain PNUSAS363263 SAMN36471337-rid18797653.denovo.47, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNNYX010000059.1 Salmonella enterica strain PNUSAS363263 SAMN36471337-rid18797653.guided.46, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABNNYX010000039.1 Salmonella enterica strain PNUSAS363263 SAMN36471337-rid18797653.denovo.41, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNYX010000060.1 Salmonella enterica strain PNUSAS363263 SAMN36471337-rid18797653.guided.51, whole genome shotgun sequence	16..831	Sulfamethoxazole	HQ840942	tet(B)	99.92	1206/1206	ABNNYX010000032.1 Salmonella enterica strain PNUSAS363263 SAMN36471337-rid18797653.denovo.32, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABNNYX010000058.1 Salmonella enterica strain PNUSAS363263 SAMN36471337-rid18797653.guided.42, whole genome shotgun sequence	1663..2868	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	100	131 / 131	ABNNYX010000043.1 Salmonella enterica strain PNUSAS363263 SAMN36471337-rid18797653.denovo.47, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNNYX010000059.1 Salmonella enterica strain PNUSAS363263 SAMN36471337-rid18797653.guided.46, whole genome shotgun sequence	2416..2546																																																avrA	ABNNYX010000002.1	402686..403555	99.885	870	0						
GCA_032505115.1_PDT001818097.1_genomic.fna	Salmonella_enterica	0.5215	421.394 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNYY010000001.1 Salmonella enterica strain PNUSAS363266 SAMN36471338-rid18797643.denovo.01, whole genome shotgun sequence	780375..780812	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNYY010000025.1 Salmonella enterica strain PNUSAS363266 SAMN36471338-rid18797643.guided.20, whole genome shotgun sequence	10606..11043	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNYY010000014.1 Salmonella enterica strain PNUSAS363266 SAMN36471338-rid18797643.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNNYY010000014.1 Salmonella enterica strain PNUSAS363266 SAMN36471338-rid18797643.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNNYY010000002.1	553207..554076	99.54	870	0						
GCA_032505145.1_PDT001818096.1_genomic.fna	Salmonella_enterica	0.5212	490.111 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNYZ010000001.1 Salmonella enterica strain PNUSAS363232 SAMN36471325-rid18797633.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNYZ010000026.1 Salmonella enterica strain PNUSAS363232 SAMN36471325-rid18797633.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNYZ010000016.1 Salmonella enterica strain PNUSAS363232 SAMN36471325-rid18797633.denovo.17, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABNNYZ010000017.1 Salmonella enterica strain PNUSAS363232 SAMN36471325-rid18797633.denovo.19, whole genome shotgun sequence	3398..3659																																																avrA	ABNNYZ010000002.1	553362..554231	99.54	870	0						
GCA_032505205.1_PDT001818095.1_genomic.fna	Salmonella_enterica	0.522	458.53 KB	4	aroC_2,dnaN_59,hemD_23,hisD_64,purE_38,sucA_19,thrA_12	1499	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_59	hemD	100	100	hemD_23	hisD	100	100	hisD_64	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNNZB010000003.1 Salmonella enterica strain PNUSAS363234 SAMN36471324-rid18797623.denovo.03, whole genome shotgun sequence	145255..145692	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNNZB010000025.1 Salmonella enterica strain PNUSAS363234 SAMN36471324-rid18797623.guided.19, whole genome shotgun sequence	3349..3786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNZB010000002.1	558896..559765	99.31	870	0						
GCA_032505265.1_PDT001818093.1_genomic.fna	Salmonella_enterica	0.521	245.639 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncFIC(FII)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNZC010000001.1 Salmonella enterica strain PNUSAS363224 SAMN36471318-rid18797603.denovo.01, whole genome shotgun sequence	573693..574130	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNNZC010000042.1 Salmonella enterica strain PNUSAS363224 SAMN36471318-rid18797603.denovo.47, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNZC010000042.1 Salmonella enterica strain PNUSAS363224 SAMN36471318-rid18797603.denovo.47, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNNZC010000054.1 Salmonella enterica strain PNUSAS363224 SAMN36471318-rid18797603.guided.25, whole genome shotgun sequence	18169..18606	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNNZC010000060.1 Salmonella enterica strain PNUSAS363224 SAMN36471318-rid18797603.guided.52, whole genome shotgun sequence	247..1272	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNZC010000061.1 Salmonella enterica strain PNUSAS363224 SAMN36471318-rid18797603.guided.55, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNNZC010000044.1 Salmonella enterica strain PNUSAS363224 SAMN36471318-rid18797603.denovo.50, whole genome shotgun sequence	901..1776	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNNZC010000059.1 Salmonella enterica strain PNUSAS363224 SAMN36471318-rid18797603.guided.48, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNNZC010000038.1 Salmonella enterica strain PNUSAS363224 SAMN36471318-rid18797603.denovo.42, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNNZC010000057.1 Salmonella enterica strain PNUSAS363224 SAMN36471318-rid18797603.guided.41, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	dfrA14	100	474/474	ABNNZC010000036.1 Salmonella enterica strain PNUSAS363224 SAMN36471318-rid18797603.denovo.39, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNNZC010000058.1 Salmonella enterica strain PNUSAS363224 SAMN36471318-rid18797603.guided.43, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNZC010000027.1 Salmonella enterica strain PNUSAS363224 SAMN36471318-rid18797603.denovo.28, whole genome shotgun sequence	9109..9668	enterobacteriales	IncFIC(FII)	94	500 / 499	ABNNZC010000019.1 Salmonella enterica strain PNUSAS363224 SAMN36471318-rid18797603.denovo.19, whole genome shotgun sequence	56754..57250																																																avrA	ABNNZC010000002.1	149828..150697	99.655	870	0						
GCA_032505285.1_PDT001818094.1_genomic.fna	Salmonella_enterica	0.5212	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNZA010000001.1 Salmonella enterica strain PNUSAS363231 SAMN36471327-rid18797613.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNZA010000028.1 Salmonella enterica strain PNUSAS363231 SAMN36471327-rid18797613.guided.19, whole genome shotgun sequence	8022..8459	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNZA010000016.1 Salmonella enterica strain PNUSAS363231 SAMN36471327-rid18797613.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNNZA010000013.1 Salmonella enterica strain PNUSAS363231 SAMN36471327-rid18797613.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNNZA010000002.1	553642..554511	99.54	870	0						
GCA_032505305.1_PDT001818090.1_genomic.fna	Salmonella_enterica	0.5215	248.01 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNZF010000001.1 Salmonella enterica strain PNUSAS363222 SAMN36471322-rid18797573.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNZF010000049.1 Salmonella enterica strain PNUSAS363222 SAMN36471322-rid18797573.guided.34, whole genome shotgun sequence	1640..2077	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNNZF010000023.1 Salmonella enterica strain PNUSAS363222 SAMN36471322-rid18797573.denovo.23, whole genome shotgun sequence	44784..45426	enterobacteriales	IncFII(S)	100	262 / 262	ABNNZF010000023.1 Salmonella enterica strain PNUSAS363222 SAMN36471322-rid18797573.denovo.23, whole genome shotgun sequence	29438..29699																																																avrA	ABNNZF010000005.1	94133..95002	99.885	870	0						
GCA_032505325.1_PDT001818092.1_genomic.fna	Salmonella_enterica	0.5214	478.544 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNZD010000001.1 Salmonella enterica strain PNUSAS363235 SAMN36471328-rid18797593.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNZD010000025.1 Salmonella enterica strain PNUSAS363235 SAMN36471328-rid18797593.guided.22, whole genome shotgun sequence	4014..4451	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNZD010000013.1 Salmonella enterica strain PNUSAS363235 SAMN36471328-rid18797593.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNNZD010000019.1 Salmonella enterica strain PNUSAS363235 SAMN36471328-rid18797593.denovo.20, whole genome shotgun sequence	3398..3659																																																avrA	ABNNZD010000002.1	553505..554374	99.54	870	0						
GCA_032505385.1_PDT001818086.1_genomic.fna	Salmonella_enterica	0.5213	443.111 KB	4	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNZJ010000001.1 Salmonella enterica strain PNUSAS363227 SAMN36471321-rid18797533.denovo.01, whole genome shotgun sequence	90824..91261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNZJ010000033.1 Salmonella enterica strain PNUSAS363227 SAMN36471321-rid18797533.guided.24, whole genome shotgun sequence	2960..3397	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNZJ010000021.1 Salmonella enterica strain PNUSAS363227 SAMN36471321-rid18797533.denovo.21, whole genome shotgun sequence	18102..18744	enterobacteriales	IncFII(S)	100	262 / 262	ABNNZJ010000021.1 Salmonella enterica strain PNUSAS363227 SAMN36471321-rid18797533.denovo.21, whole genome shotgun sequence	3402..3663																																																avrA	ABNNZJ010000002.1	506624..507493	99.54	870	0						
GCA_032505415.1_PDT001818088.1_genomic.fna	Salmonella_enterica	0.5211	238.662 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNZH010000002.1 Salmonella enterica strain PNUSAS363230 SAMN36471319-rid18797553.denovo.02, whole genome shotgun sequence	115023..115460	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNZH010000046.1 Salmonella enterica strain PNUSAS363230 SAMN36471319-rid18797553.guided.22, whole genome shotgun sequence	34178..34615	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNZH010000007.1	154652..155520	99.77	870	0						
GCA_032505425.1_PDT001818087.1_genomic.fna	Salmonella_enterica	0.5211	400.829 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNZI010000001.1 Salmonella enterica strain PNUSAS363226 SAMN36471320-rid18797543.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNZI010000027.1 Salmonella enterica strain PNUSAS363226 SAMN36471320-rid18797543.guided.19, whole genome shotgun sequence	2189..2626	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNZI010000018.1 Salmonella enterica strain PNUSAS363226 SAMN36471320-rid18797543.denovo.21, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNNZI010000020.1 Salmonella enterica strain PNUSAS363226 SAMN36471320-rid18797543.denovo.23, whole genome shotgun sequence	3403..3664																																																avrA	ABNNZI010000002.1	553636..554505	99.54	870	0						
GCA_032505505.1_PDT001818084.1_genomic.fna	Salmonella_enterica	0.5207	196.367 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aadA2b,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	1	gyrA_p.D87N	4	Col156,ColRNAI,ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNZL010000002.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.denovo.02, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNNZL010000026.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.denovo.26, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aph(3')-Ia	100	816/816	ABNNZL010000039.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.denovo.43, whole genome shotgun sequence	1930..2745	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	EU722351	aac(6')-Iaa	100	438/438	ABNNZL010000052.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.guided.31, whole genome shotgun sequence	16851..17288	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNZL010000055.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.guided.42, whole genome shotgun sequence	2819..3634	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	EU722351	aadA2b	99.87	780/780	ABNNZL010000060.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.guided.54, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNNZL010000038.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.denovo.40, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNNZL010000059.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.guided.52, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	99.84	1215/1215	ABNNZL010000038.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.denovo.40, whole genome shotgun sequence	6603..7817	Chloramphenicol, Florfenicol	AF118107	floR	99.84	1215/1215	ABNNZL010000057.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.guided.46, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNNZL010000058.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.guided.47, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNNZL010000038.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.denovo.40, whole genome shotgun sequence	4491..5666	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNNZL010000056.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.guided.45, whole genome shotgun sequence	399..1574	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																													gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	Col156	94.81	154 / 154	ABNNZL010000040.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.denovo.44, whole genome shotgun sequence	1744..1897	enterobacteriales	ColRNAI	90.08	131 / 130	ABNNZL010000039.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.denovo.43, whole genome shotgun sequence	810..940		enterobacteriales	ColRNAI	90.08	131 / 130	ABNNZL010000055.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.guided.42, whole genome shotgun sequence	4624..4754		enterobacteriales	IncFIB(S)	100	643 / 643	ABNNZL010000028.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.denovo.28, whole genome shotgun sequence	44763..45405		enterobacteriales	IncFII(S)	100	262 / 262	ABNNZL010000028.1 Salmonella enterica strain PNUSAS363233 SAMN36471232-rid18797513.denovo.28, whole genome shotgun sequence	29417..29678																											avrA	ABNNZL010000001.1	506647..507516	99.885	870	0						
GCA_032505525.1_PDT001922071.1_genomic.fna	Salmonella_enterica	0.5213	225.247 KB	8	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_58,thrA_4	239	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_4	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNNDJ010000004.1 Salmonella enterica strain PNUSAS388968 SAMN37703998-rid19648293.denovo.04, whole genome shotgun sequence	61654..62091	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNNDJ010000069.1 Salmonella enterica strain PNUSAS388968 SAMN37703998-rid19648293.guided.38, whole genome shotgun sequence	696..1133	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNDJ010000034.1 Salmonella enterica strain PNUSAS388968 SAMN37703998-rid19648293.denovo.35, whole genome shotgun sequence	11438..12080	enterobacteriales	IncFII(Yp)	91.52	224 / 230	ABNNDJ010000024.1 Salmonella enterica strain PNUSAS388968 SAMN37703998-rid19648293.denovo.24, whole genome shotgun sequence	15713..15933																																																											
GCA_032505545.1_PDT001922070.1_genomic.fna	Salmonella_enterica	0.5205	238.812 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,blaTEM-1B,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		3	Col440I,ColRNAI,IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNDK010000006.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.denovo.06, whole genome shotgun sequence	145526..145963	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNDK010000034.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.denovo.35, whole genome shotgun sequence	555..1370	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	EU722351	aph(6)-Id	100	837/837	ABNNDK010000037.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.denovo.40, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNDK010000037.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.denovo.40, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNNDK010000061.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.guided.38, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNNDK010000061.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.guided.38, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNNDK010000062.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.guided.44, whole genome shotgun sequence	2824..3261	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNNDK010000063.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.guided.50, whole genome shotgun sequence	859..1674	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	EU722351	blaTEM-1B	100	861/861	ABNNDK010000047.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.denovo.52, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNNDK010000064.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.guided.53, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	99.88	857/861	ABNNDK010000066.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.guided.55, whole genome shotgun sequence	1..857	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNNDK010000037.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.denovo.40, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNNDK010000061.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.guided.38, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNNDK010000031.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.denovo.31, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNDK010000059.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.guided.32, whole genome shotgun sequence	5674..6879	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																			enterobacteriales	Col440I	94.59	111 / 114	ABNNDK010000036.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.denovo.39, whole genome shotgun sequence	3175..3285	enterobacteriales	ColRNAI	90.91	132 / 130	ABNNDK010000041.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.denovo.45, whole genome shotgun sequence	320..450		enterobacteriales	IncX1	98.93	374 / 374	ABNNDK010000029.1 Salmonella enterica strain PNUSAS389070 SAMN37704008-rid19649913.denovo.29, whole genome shotgun sequence	32399..32772																																									avrA	ABNNDK010000001.1	621311..622180	99.885	870	0						
GCA_032505575.1_PDT001922068.1_genomic.fna	Salmonella_enterica	0.5208	781.802 KB	3	aroC_41,dnaN_42,hemD_43,hisD_501,purE_9,sucA_12,thrA_2	1567	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_501	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNNDM010000001.1 Salmonella enterica strain PNUSAS389115 SAMN37703997-rid19649493.denovo.01, whole genome shotgun sequence	406400..406837	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNNDM010000036.1 Salmonella enterica strain PNUSAS389115 SAMN37703997-rid19649493.guided.19, whole genome shotgun sequence	2057..2494	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNNDM010000008.1 Salmonella enterica strain PNUSAS389115 SAMN37703997-rid19649493.denovo.08, whole genome shotgun sequence	38587..39229																																																						avrA	ABNNDM010000004.1	407624..408493	99.425	870	0						
GCA_032505585.1_PDT001922069.1_genomic.fna	Salmonella_enterica	0.5216	498.181 KB	4	aroC_6,dnaN_14,hemD_18,hisD_797,purE_658,sucA_512,thrA_347	3278	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_797	purE	100	100	purE_658	sucA	100	100	sucA_512	thrA	100	100	thrA_347	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNDL010000001.1 Salmonella enterica strain PNUSAS389008 SAMN37704005-rid19648283.denovo.01, whole genome shotgun sequence	146596..147033	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNDL010000031.1 Salmonella enterica strain PNUSAS389008 SAMN37704005-rid19648283.guided.20, whole genome shotgun sequence	5519..5956	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNDL010000003.1	137899..138768	98.736	870	0						
GCA_032505635.1_PDT001922067.1_genomic.fna	Salmonella_enterica	0.5213	720.971 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNDN010000001.1 Salmonella enterica strain PNUSAS388913 SAMN37704021-rid19648273.denovo.01, whole genome shotgun sequence	703304..703741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNDN010000014.1 Salmonella enterica strain PNUSAS388913 SAMN37704021-rid19648273.guided.10, whole genome shotgun sequence	9265..9702	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNDN010000003.1	160400..161269	99.54	870	0						
GCA_032505745.1_PDT001922066.1_genomic.fna	Salmonella_enterica	0.5208	720.971 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNNDO010000001.1 Salmonella enterica strain PNUSAS388912 SAMN37704013-rid19648263.denovo.01, whole genome shotgun sequence	703829..704266	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNNDO010000015.1 Salmonella enterica strain PNUSAS388912 SAMN37704013-rid19648263.guided.09, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNNDO010000003.1	160638..161507	99.54	870	0						
GCA_032505765.1_PDT001818091.1_genomic.fna	Salmonella_enterica	0.5217	443.924 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNZE010000001.1 Salmonella enterica strain PNUSAS363229 SAMN36471326-rid18797583.denovo.01, whole genome shotgun sequence	826107..826544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNZE010000030.1 Salmonella enterica strain PNUSAS363229 SAMN36471326-rid18797583.guided.14, whole genome shotgun sequence	34002..34439	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNZE010000003.1	183129..183998	98.966	870	0						
GCA_032505785.1_PDT001922064.1_genomic.fna	Salmonella_enterica	0.5214	489.774 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNDQ010000001.1 Salmonella enterica strain PNUSAS388938 SAMN37704020-rid19648253.denovo.01, whole genome shotgun sequence	815076..815513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNDQ010000023.1 Salmonella enterica strain PNUSAS388938 SAMN37704020-rid19648253.guided.15, whole genome shotgun sequence	9224..9661	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNDQ010000012.1 Salmonella enterica strain PNUSAS388938 SAMN37704020-rid19648253.denovo.12, whole genome shotgun sequence	48112..48754	enterobacteriales	IncFII(S)	100	262 / 262	ABNNDQ010000012.1 Salmonella enterica strain PNUSAS388938 SAMN37704020-rid19648253.denovo.12, whole genome shotgun sequence	3859..4120																																																avrA	ABNNDQ010000002.1	553176..554045	99.54	870	0						
GCA_032505835.1_PDT001818085.1_genomic.fna	Salmonella_enterica	0.5212	412.518 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	7	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,tet(A),tet(A)	1	gyrA_p.D87N	3	Col(pHAD28),Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNZK010000001.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNZK010000026.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.guided.15, whole genome shotgun sequence	39665..40102	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	ABNNZK010000019.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.denovo.21, whole genome shotgun sequence	7822..8682	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNNZK010000019.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.denovo.21, whole genome shotgun sequence	7822..8682	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNNZK010000019.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.denovo.21, whole genome shotgun sequence	7822..8682	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNNZK010000019.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.denovo.21, whole genome shotgun sequence	7822..8682	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNNZK010000019.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.denovo.21, whole genome shotgun sequence	7822..8682	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	ABNNZK010000029.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.guided.23, whole genome shotgun sequence	7740..8600	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNNZK010000029.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.guided.23, whole genome shotgun sequence	7740..8600	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNNZK010000029.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.guided.23, whole genome shotgun sequence	7740..8600	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNNZK010000029.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.guided.23, whole genome shotgun sequence	7740..8600	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNNZK010000029.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.guided.23, whole genome shotgun sequence	7740..8600	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	99.92	1200/1200	ABNNZK010000019.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.denovo.21, whole genome shotgun sequence	5694..6893	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNNZK010000029.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.guided.23, whole genome shotgun sequence	9529..10728	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNNZK010000019.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.denovo.21, whole genome shotgun sequence	936..1066	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNNZK010000029.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.guided.23, whole genome shotgun sequence	2700..2830		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNZK010000018.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.denovo.20, whole genome shotgun sequence	6825..7467		enterobacteriales	IncFII(S)	100	262 / 262	ABNNZK010000020.1 Salmonella enterica strain PNUSAS363237 SAMN36471235-rid18797523.denovo.24, whole genome shotgun sequence	3390..3651																																		avrA	ABNNZK010000002.1	553120..553989	99.54	870	0						
GCA_032505855.1_PDT001818083.1_genomic.fna	Salmonella_enterica	0.52	278.344 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		1	IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNZM010000001.1 Salmonella enterica strain PNUSAS363236 SAMN36471234-rid18797503.denovo.01, whole genome shotgun sequence	584213..584650	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNZM010000050.1 Salmonella enterica strain PNUSAS363236 SAMN36471234-rid18797503.guided.32, whole genome shotgun sequence	2991..3428	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNNZM010000031.1 Salmonella enterica strain PNUSAS363236 SAMN36471234-rid18797503.denovo.35, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNNZM010000051.1 Salmonella enterica strain PNUSAS363236 SAMN36471234-rid18797503.guided.34, whole genome shotgun sequence	4116..5321	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncI2(Delta)	100	316 / 316	ABNNZM010000024.1 Salmonella enterica strain PNUSAS363236 SAMN36471234-rid18797503.denovo.24, whole genome shotgun sequence	27032..27347																																																						avrA	ABNNZM010000002.1	508032..508901	99.885	870	0						
GCA_032505875.1_PDT001818089.1_genomic.fna	Salmonella_enterica	0.5217	258.365 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNNZG010000001.1 Salmonella enterica strain PNUSAS363228 SAMN36471323-rid18797563.denovo.01, whole genome shotgun sequence	462173..462610	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNNZG010000044.1 Salmonella enterica strain PNUSAS363228 SAMN36471323-rid18797563.guided.26, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNNZG010000003.1	153272..154141	99.195	870	0						
GCA_032505905.1_PDT001818082.1_genomic.fna	Salmonella_enterica	0.5212	696.696 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNNZN010000001.1 Salmonella enterica strain PNUSAS363225 SAMN36471231-rid18797493.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNNZN010000027.1 Salmonella enterica strain PNUSAS363225 SAMN36471231-rid18797493.guided.15, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNNZN010000018.1 Salmonella enterica strain PNUSAS363225 SAMN36471231-rid18797493.denovo.20, whole genome shotgun sequence	6843..7485	enterobacteriales	IncFII(S)	100	262 / 262	ABNNZN010000019.1 Salmonella enterica strain PNUSAS363225 SAMN36471231-rid18797493.denovo.22, whole genome shotgun sequence	3446..3707																																																avrA	ABNNZN010000002.1	553636..554505	99.54	870	0						
GCA_032506065.1_PDT001818081.1_genomic.fna	Salmonella_enterica	0.5201	256.579 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNNZO010000001.1 Salmonella enterica strain PNUSAS363223 SAMN36471233-rid18797483.denovo.01, whole genome shotgun sequence	482062..482499	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNNZO010000054.1 Salmonella enterica strain PNUSAS363223 SAMN36471233-rid18797483.guided.30, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	97.37	152 / 154	ABNNZO010000037.1 Salmonella enterica strain PNUSAS363223 SAMN36471233-rid18797483.denovo.40, whole genome shotgun sequence	967..1118																																																						avrA	ABNNZO010000002.1	540741..541610	99.885	870	0						
GCA_032508405.1_PDT001817686.1_genomic.fna	Salmonella_enterica	0.5217	397.423 KB	4	aroC_13,dnaN_109,hemD_49,hisD_13,purE_220,sucA_13,thrA_4	754	30:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pXuzhou21	aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_220	sucA	100	100	sucA_13	thrA	100	100	thrA_4	30	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Urbana		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNOCD010000001.1 Salmonella enterica strain PNUSAS363194 SAMN36455104-rid18796073.denovo.01, whole genome shotgun sequence	626735..627172	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNOCD010000039.1 Salmonella enterica strain PNUSAS363194 SAMN36455104-rid18796073.guided.27, whole genome shotgun sequence	8794..9231	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pXuzhou21	99.86	720 / 720	ABNOCD010000020.1 Salmonella enterica strain PNUSAS363194 SAMN36455104-rid18796073.denovo.20, whole genome shotgun sequence	23692..24411																																																						avrA	ABNOCD010000002.1	39424..40293	99.425	870	0						
GCA_032508425.1_PDT001817685.1_genomic.fna	Salmonella_enterica	0.5218	265.467 KB	7	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNOCE010000001.1 Salmonella enterica strain PNUSAS363197 SAMN36455119-rid18796063.denovo.01, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNOCE010000042.1 Salmonella enterica strain PNUSAS363197 SAMN36455119-rid18796063.guided.18, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNOCE010000007.1	98990..99859	99.77	870	0						
GCA_032508445.1_PDT001817684.1_genomic.fna	Salmonella_enterica	0.5205	181.464 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNOCF010000001.1 Salmonella enterica strain PNUSAS363212 SAMN36455113-rid18796053.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNOCF010000031.1 Salmonella enterica strain PNUSAS363212 SAMN36455113-rid18796053.denovo.32, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNOCF010000031.1 Salmonella enterica strain PNUSAS363212 SAMN36455113-rid18796053.denovo.32, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNOCF010000050.1 Salmonella enterica strain PNUSAS363212 SAMN36455113-rid18796053.guided.38, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNOCF010000050.1 Salmonella enterica strain PNUSAS363212 SAMN36455113-rid18796053.guided.38, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNOCF010000051.1 Salmonella enterica strain PNUSAS363212 SAMN36455113-rid18796053.guided.45, whole genome shotgun sequence	3635..4072	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNOCF010000031.1 Salmonella enterica strain PNUSAS363212 SAMN36455113-rid18796053.denovo.32, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNOCF010000050.1 Salmonella enterica strain PNUSAS363212 SAMN36455113-rid18796053.guided.38, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNOCF010000031.1 Salmonella enterica strain PNUSAS363212 SAMN36455113-rid18796053.denovo.32, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNOCF010000050.1 Salmonella enterica strain PNUSAS363212 SAMN36455113-rid18796053.guided.38, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNOCF010000036.1 Salmonella enterica strain PNUSAS363212 SAMN36455113-rid18796053.denovo.39, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX1	98.93	374 / 374	ABNOCF010000029.1 Salmonella enterica strain PNUSAS363212 SAMN36455113-rid18796053.denovo.29, whole genome shotgun sequence	7449..7822																																																avrA	ABNOCF010000003.1	39349..40218	99.655	870	0						
GCA_032508585.1_PDT001817681.1_genomic.fna	Salmonella_enterica	0.5217	409.237 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOCI010000001.1 Salmonella enterica strain PNUSAS363209 SAMN36455110-rid18796023.denovo.01, whole genome shotgun sequence	559316..559753	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOCI010000032.1 Salmonella enterica strain PNUSAS363209 SAMN36455110-rid18796023.guided.23, whole genome shotgun sequence	7317..7754	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOCI010000017.1	39572..40440	99.195	870	0						
GCA_032508725.1_PDT001817675.1_genomic.fna	Salmonella_enterica	0.5216	207.391 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOCO010000002.1 Salmonella enterica strain PNUSAS363188 SAMN36455102-rid18795963.denovo.02, whole genome shotgun sequence	145359..145796	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOCO010000038.1 Salmonella enterica strain PNUSAS363188 SAMN36455102-rid18795963.guided.22, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNOCO010000003.1	208058..208926	99.77	870	0						
GCA_032508885.1_PDT001817672.1_genomic.fna	Salmonella_enterica	0.5216	524.431 KB	4	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNOCQ010000002.1 Salmonella enterica strain PNUSAS363192 SAMN36455107-rid18795933.denovo.02, whole genome shotgun sequence	434319..434756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNOCQ010000025.1 Salmonella enterica strain PNUSAS363192 SAMN36455107-rid18795933.guided.15, whole genome shotgun sequence	1387..1824	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOCQ010000003.1	544767..545635	99.655	869	0						
GCA_032508895.1_PDT001817673.1_genomic.fna	Salmonella_enterica	0.5219	430.295 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43*,purE_36,sucA_39,thrA_42	118*	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	99.8003992015968	100	hisD_43*	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOCP010000001.1 Salmonella enterica strain PNUSAS363199 SAMN36455116-rid18795943.denovo.01, whole genome shotgun sequence	560945..561382	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOCP010000032.1 Salmonella enterica strain PNUSAS363199 SAMN36455116-rid18795943.guided.15, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOCP010000010.1	139898..140766	99.195	870	0						
GCA_032510425.1_PDT001817562.1_genomic.fna	Salmonella_enterica	0.5205	386.656 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOEC010000001.1 Salmonella enterica strain PNUSAS363171 SAMN36453230-rid18794923.denovo.01, whole genome shotgun sequence	482403..482840	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOEC010000024.1 Salmonella enterica strain PNUSAS363171 SAMN36453230-rid18794923.guided.13, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032510465.1_PDT001817561.1_genomic.fna	Salmonella_enterica	0.5212	538.436 KB	2	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOED010000001.1 Salmonella enterica strain PNUSAS363170 SAMN36453228-rid18794913.denovo.01, whole genome shotgun sequence	654207..654644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOED010000035.1 Salmonella enterica strain PNUSAS363170 SAMN36453228-rid18794913.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOED010000004.1	39483..40352	99.425	870	0						
GCA_032510485.1_PDT001817560.1_genomic.fna	Salmonella_enterica	0.5186	234.125 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOEG010000001.1 Salmonella enterica strain PNUSAS363168 SAMN36453229-rid18794903.denovo.01, whole genome shotgun sequence	486123..486560	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOEG010000046.1 Salmonella enterica strain PNUSAS363168 SAMN36453229-rid18794903.guided.27, whole genome shotgun sequence	13234..13671	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNOEG010000003.1 Salmonella enterica strain PNUSAS363168 SAMN36453229-rid18794903.denovo.03, whole genome shotgun sequence	388761..389183	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNOEG010000048.1 Salmonella enterica strain PNUSAS363168 SAMN36453229-rid18794903.guided.33, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNOEG010000020.1 Salmonella enterica strain PNUSAS363168 SAMN36453229-rid18794903.denovo.20, whole genome shotgun sequence	67950..68091																																																						avrA	ABNOEG010000004.1	39347..40216	99.08	870	0						
GCA_032510545.1_PDT001817558.1_genomic.fna	Salmonella_enterica	0.5212	406.053 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOEH010000004.1 Salmonella enterica strain PNUSAS363169 SAMN36453227-rid18794883.denovo.04, whole genome shotgun sequence	162389..162826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOEH010000032.1 Salmonella enterica strain PNUSAS363169 SAMN36453227-rid18794883.guided.23, whole genome shotgun sequence	12356..12793	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOEH010000019.1 Salmonella enterica strain PNUSAS363169 SAMN36453227-rid18794883.denovo.20, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNOEH010000019.1 Salmonella enterica strain PNUSAS363169 SAMN36453227-rid18794883.denovo.20, whole genome shotgun sequence	5032..5293																																																avrA	ABNOEH010000001.1	553192..554061	99.54	870	0						
GCA_032510725.1_PDT001817559.1_genomic.fna	Salmonella_enterica	0.5217	291.842 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOEF010000001.1 Salmonella enterica strain PNUSAS363167 SAMN36453226-rid18794893.denovo.01, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOEF010000039.1 Salmonella enterica strain PNUSAS363167 SAMN36453226-rid18794893.guided.22, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNOEF010000031.1 Salmonella enterica strain PNUSAS363167 SAMN36453226-rid18794893.denovo.34, whole genome shotgun sequence	547..675	enterobacteriales	IncI1-I(Alpha)	94.93	138 / 142	ABNOEF010000020.1 Salmonella enterica strain PNUSAS363167 SAMN36453226-rid18794893.denovo.20, whole genome shotgun sequence	67977..68112																																																avrA	ABNOEF010000002.1	146707..147576	98.966	870	0						
GCA_032510905.1_PDT001817539.1_genomic.fna	Salmonella_enterica	0.5209	466.098 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOEP010000001.1 Salmonella enterica strain PNUSAS363147 SAMN36452825-rid18794713.denovo.01, whole genome shotgun sequence	561466..561903	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOEP010000026.1 Salmonella enterica strain PNUSAS363147 SAMN36452825-rid18794713.guided.18, whole genome shotgun sequence	6491..6928	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOEP010000010.1	36958..37826	99.195	870	0						
GCA_032510965.1_PDT001817537.1_genomic.fna	Salmonella_enterica	0.5198	695.677 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOER010000001.1 Salmonella enterica strain PNUSAS363158 SAMN36452837-rid18794693.denovo.01, whole genome shotgun sequence	498039..498476	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOER010000021.1 Salmonella enterica strain PNUSAS363158 SAMN36452837-rid18794693.guided.14, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032510985.1_PDT001817535.1_genomic.fna	Salmonella_enterica	0.5202	709.852 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOEQ010000001.1 Salmonella enterica strain PNUSAS363150 SAMN36452822-rid18794683.denovo.01, whole genome shotgun sequence	1319899..1320336	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOEQ010000017.1 Salmonella enterica strain PNUSAS363150 SAMN36452822-rid18794683.guided.10, whole genome shotgun sequence	44263..44700	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOEQ010000003.1	559414..560283	99.425	870	0						
GCA_032511015.1_PDT001817538.1_genomic.fna	Salmonella_enterica	0.5215	341.38 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOEO010000003.1 Salmonella enterica strain PNUSAS363157 SAMN36452816-rid18794703.denovo.03, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOEO010000033.1 Salmonella enterica strain PNUSAS363157 SAMN36452816-rid18794703.guided.21, whole genome shotgun sequence	33194..33631	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOEO010000016.1 Salmonella enterica strain PNUSAS363157 SAMN36452816-rid18794703.denovo.16, whole genome shotgun sequence	48403..49045	enterobacteriales	IncFII(S)	100	262 / 262	ABNOEO010000016.1 Salmonella enterica strain PNUSAS363157 SAMN36452816-rid18794703.denovo.16, whole genome shotgun sequence	64130..64391																																																avrA	ABNOEO010000005.1	175018..175886	100	869	0						
GCA_032511055.1_PDT001817534.1_genomic.fna	Salmonella_enterica	0.5212	341.862 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_510,sucA_6,thrA_68	2141	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_510	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOES010000001.1 Salmonella enterica strain PNUSAS363153 SAMN36452819-rid18794673.denovo.01, whole genome shotgun sequence	727731..728168	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOES010000023.1 Salmonella enterica strain PNUSAS363153 SAMN36452819-rid18794673.guided.20, whole genome shotgun sequence	7963..8400	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOES010000002.1	551339..552208	99.195	870	0						
GCA_032511135.1_PDT001817532.1_genomic.fna	Salmonella_enterica	0.5202	402.315 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOEX010000001.1 Salmonella enterica strain PNUSAS363161 SAMN36452839-rid18794653.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOEX010000022.1 Salmonella enterica strain PNUSAS363161 SAMN36452839-rid18794653.guided.10, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.28	119 / 131	ABNOEX010000017.1 Salmonella enterica strain PNUSAS363161 SAMN36452839-rid18794653.denovo.20, whole genome shotgun sequence	461..579																																																																	
GCA_032511185.1_PDT001817530.1_genomic.fna	Salmonella_enterica	0.5207	489.654 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOEW010000001.1 Salmonella enterica strain PNUSAS363148 SAMN36452838-rid18794633.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOEW010000024.1 Salmonella enterica strain PNUSAS363148 SAMN36452838-rid18794633.guided.12, whole genome shotgun sequence	24687..25124	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOEW010000012.1 Salmonella enterica strain PNUSAS363148 SAMN36452838-rid18794633.denovo.14, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABNOEW010000016.1 Salmonella enterica strain PNUSAS363148 SAMN36452838-rid18794633.denovo.19, whole genome shotgun sequence	3395..3656																																																avrA	ABNOEW010000002.1	584148..585017	99.54	870	0						
GCA_032511335.1_PDT001817525.1_genomic.fna	Salmonella_enterica	0.5212	478.611 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOFA010000001.1 Salmonella enterica strain PNUSAS363160 SAMN36452823-rid18794593.denovo.01, whole genome shotgun sequence	769962..770399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOFA010000027.1 Salmonella enterica strain PNUSAS363160 SAMN36452823-rid18794593.guided.15, whole genome shotgun sequence	28792..29229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOFA010000013.1 Salmonella enterica strain PNUSAS363160 SAMN36452823-rid18794593.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNOFA010000013.1 Salmonella enterica strain PNUSAS363160 SAMN36452823-rid18794593.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNOFA010000002.1	553551..554420	99.54	870	0						
GCA_032511385.1_PDT001817527.1_genomic.fna	Salmonella_enterica	0.5201	384.988 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOEZ010000001.1 Salmonella enterica strain PNUSAS363159 SAMN36452836-rid18794603.denovo.01, whole genome shotgun sequence	642138..642575	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOEZ010000022.1 Salmonella enterica strain PNUSAS363159 SAMN36452836-rid18794603.guided.11, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032511515.1_PDT001817522.1_genomic.fna	Salmonella_enterica	0.5201	395.618 KB	3	aroC_41,dnaN_42,hemD_299,hisD_58,purE_9,sucA_12,thrA_2	1606	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_299	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOFC010000001.1 Salmonella enterica strain PNUSAS363149 SAMN36452824-rid18794563.denovo.01, whole genome shotgun sequence	671393..671830	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOFC010000024.1 Salmonella enterica strain PNUSAS363149 SAMN36452824-rid18794563.guided.21, whole genome shotgun sequence	394..831	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOFC010000005.1	102672..103540	99.31	870	0						
GCA_032511545.1_PDT001817520.1_genomic.fna	Salmonella_enterica	0.5206	225.554 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	8	aac(6')-Iaa,aph(3')-IIa,aac(3)-IId,aadA2,aph(6)-Id,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-IIa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3')-IIa,aac(3)-IId,aadA2,blaTEM-1B,blaTEM-1B,floR,floR,floR	1	gyrA_p.S83F	3	Col(pHAD28),ColRNAI,IncFIB(AP001918)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOFF010000001.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.denovo.01, whole genome shotgun sequence	482682..483119	Amikacin, Tobramycin	NC_003197	aph(3')-IIa	100	795/795	ABNOFF010000028.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.denovo.33, whole genome shotgun sequence	10376..11170	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	aac(3)-IId	99.88	861/861	ABNOFF010000029.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.denovo.35, whole genome shotgun sequence	12105..12965	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA2	100	792/792	ABNOFF010000047.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.denovo.55, whole genome shotgun sequence	243..1034	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	837/837	ABNOFF010000048.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.denovo.56, whole genome shotgun sequence	68..904	Streptomycin	M28829	aac(6')-Iaa	100	438/438	ABNOFF010000056.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.guided.15, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOFF010000059.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.guided.31, whole genome shotgun sequence	19486..20322	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOFF010000059.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.guided.31, whole genome shotgun sequence	18683..19486	Streptomycin	AF321551	aph(3')-IIa	100	795/795	ABNOFF010000059.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.guided.31, whole genome shotgun sequence	7716..8510	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	aph(6)-Id	100	837/837	ABNOFF010000060.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.guided.32, whole genome shotgun sequence	19486..20322	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNOFF010000060.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.guided.32, whole genome shotgun sequence	18684..19486	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNOFF010000060.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.guided.32, whole genome shotgun sequence	18683..19486	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNOFF010000060.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.guided.32, whole genome shotgun sequence	18683..19486	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNOFF010000060.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.guided.32, whole genome shotgun sequence	18683..19486	Streptomycin	AF321550	aph(3')-IIa	100	795/795	ABNOFF010000060.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.guided.32, whole genome shotgun sequence	7716..8510	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	aac(3)-IId	99.88	861/861	ABNOFF010000062.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.guided.39, whole genome shotgun sequence	71..931	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA2	100	792/792	ABNOFF010000063.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.guided.54, whole genome shotgun sequence	490..1281	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABNOFF010000029.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.denovo.35, whole genome shotgun sequence	6273..7133	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNOFF010000062.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.guided.39, whole genome shotgun sequence	5903..6763	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.11	1214/1215	ABNOFF010000028.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.denovo.33, whole genome shotgun sequence	15560..16773	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNOFF010000059.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.guided.31, whole genome shotgun sequence	2113..3326	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNOFF010000060.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.guided.32, whole genome shotgun sequence	2113..3326	Chloramphenicol, Florfenicol	AF118107																																																																																																																																																																																																																																																																																																														gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNOFF010000035.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.denovo.42, whole genome shotgun sequence	3134..3264	enterobacteriales	ColRNAI	90.08	131 / 130	ABNOFF010000036.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.denovo.43, whole genome shotgun sequence	3980..4110		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNOFF010000034.1 Salmonella enterica strain PNUSAS363156 SAMN36452815-rid18794543.denovo.41, whole genome shotgun sequence	2185..2866																																									avrA	ABNOFF010000009.1	172972..173841	99.885	870	0						
GCA_032511585.1_PDT001817521.1_genomic.fna	Salmonella_enterica	0.5212	489.886 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOFD010000001.1 Salmonella enterica strain PNUSAS363154 SAMN36452818-rid18794553.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOFD010000022.1 Salmonella enterica strain PNUSAS363154 SAMN36452818-rid18794553.guided.17, whole genome shotgun sequence	8638..9075	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOFD010000012.1 Salmonella enterica strain PNUSAS363154 SAMN36452818-rid18794553.denovo.13, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNOFD010000012.1 Salmonella enterica strain PNUSAS363154 SAMN36452818-rid18794553.denovo.13, whole genome shotgun sequence	53092..53353																																																avrA	ABNOFD010000002.1	553635..554504	99.54	870	0						
GCA_032511635.1_PDT001817519.1_genomic.fna	Salmonella_enterica	0.5209	737.599 KB	2	aroC_11,dnaN_10,hemD_25,hisD_42,purE_40,sucA_13,thrA_4	411	4:e,h:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNOFH010000001.1 Salmonella enterica strain PNUSAS363152 SAMN36452820-rid18794413.denovo.01, whole genome shotgun sequence	623457..623894	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNOFH010000021.1 Salmonella enterica strain PNUSAS363152 SAMN36452820-rid18794413.guided.08, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOFH010000003.1	94145..95014	99.54	870	0						
GCA_032511685.1_PDT001817517.1_genomic.fna	Salmonella_enterica	0.5224	658.711 KB	2	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOFI010000001.1 Salmonella enterica strain PNUSAS363151 SAMN36452821-rid18794523.denovo.01, whole genome shotgun sequence	1342263..1342700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOFI010000021.1 Salmonella enterica strain PNUSAS363151 SAMN36452821-rid18794523.guided.17, whole genome shotgun sequence	3808..4245	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032511755.1_PDT001817516.1_genomic.fna	Salmonella_enterica	0.5209	369.271 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOFJ010000002.1 Salmonella enterica strain PNUSAS363155 SAMN36452817-rid18794403.denovo.02, whole genome shotgun sequence	533293..533730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOFJ010000035.1 Salmonella enterica strain PNUSAS363155 SAMN36452817-rid18794403.guided.25, whole genome shotgun sequence	5291..5728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOFJ010000007.1	139987..140856	99.425	870	0						
GCA_032511805.1_PDT001817472.1_genomic.fna	Salmonella_enterica	0.5213	205.991 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNOFL010000001.1 Salmonella enterica strain PNUSAS363093 SAMN36452536-rid18794173.denovo.01, whole genome shotgun sequence	314142..314579	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNOFL010000051.1 Salmonella enterica strain PNUSAS363093 SAMN36452536-rid18794173.guided.37, whole genome shotgun sequence	8844..9281	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032511835.1_PDT001817470.1_genomic.fna	Salmonella_enterica	0.5205	510.109 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_12,sucA_35,thrA_4	238	4:a:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_12	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	a	1,7	Salmonella enterica subspecies enterica (subspecies I)	Arechavaleta		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNOFN010000001.1 Salmonella enterica strain PNUSAS363090 SAMN36452526-rid18793783.denovo.01, whole genome shotgun sequence	450711..451148	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNOFN010000027.1 Salmonella enterica strain PNUSAS363090 SAMN36452526-rid18793783.guided.16, whole genome shotgun sequence	16136..16573	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOFN010000005.1	150961..151829	99.54	870	0						
GCA_032511875.1_PDT001817468.1_genomic.fna	Salmonella_enterica	0.5218	338.376 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOFM010000001.1 Salmonella enterica strain PNUSAS363085 SAMN36452528-rid18794153.denovo.01, whole genome shotgun sequence	772111..772548	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOFM010000036.1 Salmonella enterica strain PNUSAS363085 SAMN36452528-rid18794153.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOFM010000002.1	585339..586208	99.195	870	0						
GCA_032511905.1_PDT001817467.1_genomic.fna	Salmonella_enterica	0.5211	406.438 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOFP010000001.1 Salmonella enterica strain PNUSAS363087 SAMN36452535-rid18794143.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOFP010000017.1 Salmonella enterica strain PNUSAS363087 SAMN36452535-rid18794143.denovo.18, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABNOFP010000018.1 Salmonella enterica strain PNUSAS363087 SAMN36452535-rid18794143.denovo.20, whole genome shotgun sequence	3385..3646																																																avrA	ABNOFP010000002.1	553368..554237	99.54	870	0						
GCA_032511925.1_PDT001817465.1_genomic.fna	Salmonella_enterica	0.5204	755.392 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNOFR010000001.1 Salmonella enterica strain PNUSAS363099 SAMN36452534-rid18793763.denovo.01, whole genome shotgun sequence	1108066..1108503	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNOFR010000026.1 Salmonella enterica strain PNUSAS363099 SAMN36452534-rid18793763.guided.19, whole genome shotgun sequence	12293..12730	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOFR010000002.1	555947..556815	99.425	870	0						
GCA_032511965.1_PDT001817464.1_genomic.fna	Salmonella_enterica	0.5205	274.2 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI2(Delta)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNOFO010000004.1 Salmonella enterica strain PNUSAS363086 SAMN36452533-rid18793753.denovo.04, whole genome shotgun sequence	63930..64367	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNOFO010000053.1 Salmonella enterica strain PNUSAS363086 SAMN36452533-rid18793753.guided.32, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI2(Delta)	98.1	316 / 316	ABNOFO010000023.1 Salmonella enterica strain PNUSAS363086 SAMN36452533-rid18793753.denovo.24, whole genome shotgun sequence	27279..27594																																																																	
GCA_032511995.1_PDT001817461.1_genomic.fna	Salmonella_enterica	0.5212	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOFS010000001.1 Salmonella enterica strain PNUSAS363097 SAMN36452532-rid18794103.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOFS010000025.1 Salmonella enterica strain PNUSAS363097 SAMN36452532-rid18794103.guided.18, whole genome shotgun sequence	7296..7733	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOFS010000016.1 Salmonella enterica strain PNUSAS363097 SAMN36452532-rid18794103.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNOFS010000017.1 Salmonella enterica strain PNUSAS363097 SAMN36452532-rid18794103.denovo.19, whole genome shotgun sequence	3389..3650																																																avrA	ABNOFS010000002.1	553636..554505	99.54	870	0						
GCA_032512015.1_PDT001817462.1_genomic.fna	Salmonella_enterica	0.5208	296.472 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOFQ010000001.1 Salmonella enterica strain PNUSAS363100 SAMN36452530-rid18794113.denovo.01, whole genome shotgun sequence	387528..387965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOFQ010000051.1 Salmonella enterica strain PNUSAS363100 SAMN36452530-rid18794113.guided.19, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOFQ010000004.1	150794..151664	99.196	871	0						
GCA_032512105.1_PDT001817458.1_genomic.fna	Salmonella_enterica	0.5226	406.452 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNOFT010000003.1 Salmonella enterica strain PNUSAS363095 SAMN36452531-rid18793723.denovo.03, whole genome shotgun sequence	175100..175537	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNOFT010000031.1 Salmonella enterica strain PNUSAS363095 SAMN36452531-rid18793723.guided.20, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOFT010000002.1	150068..150937	99.655	870	0						
GCA_032512125.1_PDT001817459.1_genomic.fna	Salmonella_enterica	0.5218	649.244 KB	2	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNOFU010000001.1 Salmonella enterica strain PNUSAS363088 SAMN36452529-rid18793733.denovo.01, whole genome shotgun sequence	1338900..1339337	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNOFU010000017.1 Salmonella enterica strain PNUSAS363088 SAMN36452529-rid18793733.guided.13, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOFU010000002.1	149711..150580	99.425	870	0						
GCA_032512145.1_PDT001817460.1_genomic.fna	Salmonella_enterica	0.5213	489.886 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOFV010000001.1 Salmonella enterica strain PNUSAS363098 SAMN36452525-rid18793743.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOFV010000029.1 Salmonella enterica strain PNUSAS363098 SAMN36452525-rid18793743.guided.20, whole genome shotgun sequence	5084..5521	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOFV010000017.1 Salmonella enterica strain PNUSAS363098 SAMN36452525-rid18793743.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNOFV010000018.1 Salmonella enterica strain PNUSAS363098 SAMN36452525-rid18793743.denovo.21, whole genome shotgun sequence	3402..3663																																																avrA	ABNOFV010000002.1	553636..554505	99.54	870	0						
GCA_032512185.1_PDT001817456.1_genomic.fna	Salmonella_enterica	0.5206	296.502 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOFY010000001.1 Salmonella enterica strain PNUSAS363089 SAMN36452524-rid18794083.denovo.01, whole genome shotgun sequence	386398..386835	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOFY010000048.1 Salmonella enterica strain PNUSAS363089 SAMN36452524-rid18794083.guided.19, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOFY010000004.1	150794..151664	99.196	871	0						
GCA_032512205.1_PDT001817455.1_genomic.fna	Salmonella_enterica	0.5212	489.159 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOFX010000001.1 Salmonella enterica strain PNUSAS363094 SAMN36452527-rid18793713.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOFX010000025.1 Salmonella enterica strain PNUSAS363094 SAMN36452527-rid18793713.guided.16, whole genome shotgun sequence	20663..21100	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOFX010000017.1 Salmonella enterica strain PNUSAS363094 SAMN36452527-rid18793713.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNOFX010000018.1 Salmonella enterica strain PNUSAS363094 SAMN36452527-rid18793713.denovo.21, whole genome shotgun sequence	3375..3636																																																avrA	ABNOFX010000002.1	585493..586362	99.54	870	0						
GCA_032512265.1_PDT001817452.1_genomic.fna	Salmonella_enterica	0.521	347.348 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	1	gyrA_p.S83Y	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOFW010000003.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.denovo.03, whole genome shotgun sequence	159452..159889	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOFW010000021.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.denovo.21, whole genome shotgun sequence	26369..27205	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOFW010000021.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.denovo.21, whole genome shotgun sequence	25566..26369	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNOFW010000036.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.guided.23, whole genome shotgun sequence	10879..11316	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOFW010000040.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.guided.33, whole genome shotgun sequence	4686..5522	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOFW010000040.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.guided.33, whole genome shotgun sequence	3883..4686	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNOFW010000027.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.denovo.31, whole genome shotgun sequence	2089..3234	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNOFW010000039.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.guided.30, whole genome shotgun sequence	2130..3275	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABNOFW010000021.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.denovo.21, whole genome shotgun sequence	30341..31554	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNOFW010000041.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.guided.35, whole genome shotgun sequence	2159..3372	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNOFW010000021.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.denovo.21, whole genome shotgun sequence	24690..25505	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNOFW010000040.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.guided.33, whole genome shotgun sequence	3007..3822	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNOFW010000021.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.denovo.21, whole genome shotgun sequence	28466..29740	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNOFW010000042.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.guided.36, whole genome shotgun sequence	1069..2343	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1275/1275	ABNOFW010000043.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.guided.37, whole genome shotgun sequence	1069..2343	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																															gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncC	100	417 / 417	ABNOFW010000024.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.denovo.25, whole genome shotgun sequence	17492..17908	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNOFW010000020.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.denovo.20, whole genome shotgun sequence	16902..17161		enterobacteriales	IncX1	98.66	374 / 374	ABNOFW010000025.1 Salmonella enterica strain PNUSAS363092 SAMN36452522-rid18794073.denovo.27, whole genome shotgun sequence	8572..8945																																									avrA	ABNOFW010000006.1	173549..174417	99.54	870	0						
GCA_032512285.1_PDT001817447.1_genomic.fna	Salmonella_enterica	0.5204	403.169 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOGA010000001.1 Salmonella enterica strain PNUSAS363096 SAMN36452523-rid18794053.denovo.01, whole genome shotgun sequence	477388..477825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOGA010000039.1 Salmonella enterica strain PNUSAS363096 SAMN36452523-rid18794053.guided.16, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOGA010000002.1	506844..507714	99.196	871	0						
GCA_032512345.1_PDT001817439.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOGB010000001.1 Salmonella enterica strain PNUSAS363030 SAMN36452463-rid18793623.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOGB010000025.1 Salmonella enterica strain PNUSAS363030 SAMN36452463-rid18793623.guided.17, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOGB010000016.1 Salmonella enterica strain PNUSAS363030 SAMN36452463-rid18793623.denovo.18, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNOGB010000020.1 Salmonella enterica strain PNUSAS363030 SAMN36452463-rid18793623.denovo.23, whole genome shotgun sequence	3415..3676																																																avrA	ABNOGB010000002.1	553179..554048	99.54	870	0						
GCA_032512365.1_PDT001817449.1_genomic.fna	Salmonella_enterica	0.5219	699.691 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNOFZ010000001.1 Salmonella enterica strain PNUSAS363091 SAMN36452521-rid18793673.denovo.01, whole genome shotgun sequence	510576..511013	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNOFZ010000017.1 Salmonella enterica strain PNUSAS363091 SAMN36452521-rid18793673.guided.14, whole genome shotgun sequence	8014..8451	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOFZ010000002.1	544607..545475	99.425	870	0						
GCA_032512385.1_PDT001817438.1_genomic.fna	Salmonella_enterica	0.5216	257.84 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_110,sucA_9,thrA_2	302	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_110	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOGC010000001.1 Salmonella enterica strain PNUSAS363034 SAMN36452462-rid18793613.denovo.01, whole genome shotgun sequence	207030..207467	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOGC010000040.1 Salmonella enterica strain PNUSAS363034 SAMN36452462-rid18793613.guided.23, whole genome shotgun sequence	8006..8443	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOGC010000017.1 Salmonella enterica strain PNUSAS363034 SAMN36452462-rid18793613.denovo.17, whole genome shotgun sequence	48426..49068	enterobacteriales	IncFII(S)	100	262 / 262	ABNOGC010000017.1 Salmonella enterica strain PNUSAS363034 SAMN36452462-rid18793613.denovo.17, whole genome shotgun sequence	64153..64414																																																avrA	ABNOGC010000002.1	208694..209563	99.885	870	0						
GCA_032512425.1_PDT001817436.1_genomic.fna	Salmonella_enterica	0.5209	283.352 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOGE010000001.1 Salmonella enterica strain PNUSAS363029 SAMN36452458-rid18793993.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOGE010000031.1 Salmonella enterica strain PNUSAS363029 SAMN36452458-rid18793993.guided.18, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOGE010000021.1 Salmonella enterica strain PNUSAS363029 SAMN36452458-rid18793993.denovo.23, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNOGE010000023.1 Salmonella enterica strain PNUSAS363029 SAMN36452458-rid18793993.denovo.26, whole genome shotgun sequence	3416..3677																																																avrA	ABNOGE010000006.1	175109..175978	99.54	870	0						
GCA_032512445.1_PDT001817437.1_genomic.fna	Salmonella_enterica	0.5209	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOGD010000001.1 Salmonella enterica strain PNUSAS363028 SAMN36452464-rid18794003.denovo.01, whole genome shotgun sequence	767456..767893	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOGD010000027.1 Salmonella enterica strain PNUSAS363028 SAMN36452464-rid18794003.guided.13, whole genome shotgun sequence	10439..10876	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOGD010000015.1 Salmonella enterica strain PNUSAS363028 SAMN36452464-rid18794003.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNOGD010000018.1 Salmonella enterica strain PNUSAS363028 SAMN36452464-rid18794003.denovo.21, whole genome shotgun sequence	3407..3668																																																avrA	ABNOGD010000002.1	553323..554192	99.54	870	0						
GCA_032512505.1_PDT001817434.1_genomic.fna	Salmonella_enterica	0.5199	406.116 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOGG010000004.1 Salmonella enterica strain PNUSAS363033 SAMN36452461-rid18793593.denovo.04, whole genome shotgun sequence	161971..162408	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOGG010000030.1 Salmonella enterica strain PNUSAS363033 SAMN36452461-rid18793593.guided.17, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOGG010000021.1 Salmonella enterica strain PNUSAS363033 SAMN36452461-rid18793593.denovo.23, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNOGG010000018.1 Salmonella enterica strain PNUSAS363033 SAMN36452461-rid18793593.denovo.19, whole genome shotgun sequence	4260..4521																																																avrA	ABNOGG010000001.1	585526..586395	99.54	870	0						
GCA_032512525.1_PDT001817433.1_genomic.fna	Salmonella_enterica	0.5208	306.205 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOGH010000001.1 Salmonella enterica strain PNUSAS363025 SAMN36452465-rid18793583.denovo.01, whole genome shotgun sequence	771821..772258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOGH010000026.1 Salmonella enterica strain PNUSAS363025 SAMN36452465-rid18793583.guided.15, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOGH010000015.1 Salmonella enterica strain PNUSAS363025 SAMN36452465-rid18793583.denovo.17, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNOGH010000019.1 Salmonella enterica strain PNUSAS363025 SAMN36452465-rid18793583.denovo.22, whole genome shotgun sequence	3386..3647																																																avrA	ABNOGH010000002.1	553312..554181	99.54	870	0						
GCA_032512545.1_PDT001817435.1_genomic.fna	Salmonella_enterica	0.5201	485.903 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOGF010000001.1 Salmonella enterica strain PNUSAS363032 SAMN36452466-rid18793603.denovo.01, whole genome shotgun sequence	671555..671992	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOGF010000031.1 Salmonella enterica strain PNUSAS363032 SAMN36452466-rid18793603.guided.23, whole genome shotgun sequence	20585..21022	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNOGF010000011.1 Salmonella enterica strain PNUSAS363032 SAMN36452466-rid18793603.denovo.11, whole genome shotgun sequence	73845..73986																																																						avrA	ABNOGF010000003.1	407624..408492	99.31	870	0						
GCA_032512585.1_PDT001817431.1_genomic.fna	Salmonella_enterica	0.5208	365.033 KB	4	aroC_13,dnaN_127,hemD_506,hisD_113,purE_114,sucA_107,thrA_4	3095	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_506	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOGK010000001.1 Salmonella enterica strain PNUSAS363026 SAMN36452459-rid18793973.denovo.01, whole genome shotgun sequence	498131..498568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOGK010000031.1 Salmonella enterica strain PNUSAS363026 SAMN36452459-rid18793973.guided.20, whole genome shotgun sequence	2860..3297	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOGK010000008.1	140447..141316	99.425	870	0						
GCA_032512605.1_PDT001817432.1_genomic.fna	Salmonella_enterica	0.5211	476.57 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOGI010000001.1 Salmonella enterica strain PNUSAS363031 SAMN36452460-rid18793983.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOGI010000026.1 Salmonella enterica strain PNUSAS363031 SAMN36452460-rid18793983.guided.17, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOGI010000016.1 Salmonella enterica strain PNUSAS363031 SAMN36452460-rid18793983.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNOGI010000016.1 Salmonella enterica strain PNUSAS363031 SAMN36452460-rid18793983.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNOGI010000002.1	553282..554151	99.54	870	0						
GCA_032512685.1_PDT001817428.1_genomic.fna	Salmonella_enterica	0.5221	259.11 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_110,sucA_9,thrA_2	302	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_110	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOGL010000001.1 Salmonella enterica strain PNUSAS362802 SAMN36452448-rid18793563.denovo.01, whole genome shotgun sequence	207030..207467	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOGL010000048.1 Salmonella enterica strain PNUSAS362802 SAMN36452448-rid18793563.guided.37, whole genome shotgun sequence	6508..6945	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOGL010000024.1 Salmonella enterica strain PNUSAS362802 SAMN36452448-rid18793563.denovo.24, whole genome shotgun sequence	44728..45370	enterobacteriales	IncFII(S)	100	262 / 262	ABNOGL010000024.1 Salmonella enterica strain PNUSAS362802 SAMN36452448-rid18793563.denovo.24, whole genome shotgun sequence	29382..29643																																																avrA	ABNOGL010000003.1	208694..209563	99.885	870	0						
GCA_032512705.1_PDT001817427.1_genomic.fna	Salmonella_enterica	0.5213	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOGM010000001.1 Salmonella enterica strain PNUSAS363052 SAMN36452342-rid18793553.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOGM010000023.1 Salmonella enterica strain PNUSAS363052 SAMN36452342-rid18793553.guided.11, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOGM010000015.1 Salmonella enterica strain PNUSAS363052 SAMN36452342-rid18793553.denovo.17, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABNOGM010000016.1 Salmonella enterica strain PNUSAS363052 SAMN36452342-rid18793553.denovo.19, whole genome shotgun sequence	3393..3654																																																avrA	ABNOGM010000002.1	553636..554505	99.54	870	0						
GCA_032512765.1_PDT001817425.1_genomic.fna	Salmonella_enterica	0.5213	490.119 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOGO010000001.1 Salmonella enterica strain PNUSAS363050 SAMN36452341-rid18793533.denovo.01, whole genome shotgun sequence	774527..774964	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOGO010000024.1 Salmonella enterica strain PNUSAS363050 SAMN36452341-rid18793533.guided.15, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOGO010000016.1 Salmonella enterica strain PNUSAS363050 SAMN36452341-rid18793533.denovo.18, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNOGO010000017.1 Salmonella enterica strain PNUSAS363050 SAMN36452341-rid18793533.denovo.20, whole genome shotgun sequence	3438..3699																																																avrA	ABNOGO010000002.1	553559..554428	99.54	870	0						
GCA_032512785.1_PDT001817426.1_genomic.fna	Salmonella_enterica	0.5215	324.466 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOGN010000001.1 Salmonella enterica strain PNUSAS363049 SAMN36452337-rid18793543.denovo.01, whole genome shotgun sequence	382990..383427	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOGN010000043.1 Salmonella enterica strain PNUSAS363049 SAMN36452337-rid18793543.guided.26, whole genome shotgun sequence	20622..21059	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOGN010000025.1 Salmonella enterica strain PNUSAS363049 SAMN36452337-rid18793543.denovo.25, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNOGN010000025.1 Salmonella enterica strain PNUSAS363049 SAMN36452337-rid18793543.denovo.25, whole genome shotgun sequence	9325..9586																																																avrA	ABNOGN010000002.1	209686..210555	99.885	870	0						
GCA_032512825.1_PDT001817423.1_genomic.fna	Salmonella_enterica	0.5212	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOGQ010000001.1 Salmonella enterica strain PNUSAS363045 SAMN36452335-rid18793513.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOGQ010000023.1 Salmonella enterica strain PNUSAS363045 SAMN36452335-rid18793513.guided.19, whole genome shotgun sequence	9952..10389	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOGQ010000017.1 Salmonella enterica strain PNUSAS363045 SAMN36452335-rid18793513.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNOGQ010000014.1 Salmonella enterica strain PNUSAS363045 SAMN36452335-rid18793513.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNOGQ010000002.1	553636..554505	99.54	870	0						
GCA_032512845.1_PDT001817422.1_genomic.fna	Salmonella_enterica	0.5208	209.58 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOGR010000001.1 Salmonella enterica strain PNUSAS363051 SAMN36452339-rid18793503.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOGR010000038.1 Salmonella enterica strain PNUSAS363051 SAMN36452339-rid18793503.guided.20, whole genome shotgun sequence	44293..44730	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNOGR010000020.1 Salmonella enterica strain PNUSAS363051 SAMN36452339-rid18793503.denovo.21, whole genome shotgun sequence	34958..35491																																																						avrA	ABNOGR010000009.1	153640..154509	99.425	870	0						
GCA_032512865.1_PDT001817424.1_genomic.fna	Salmonella_enterica	0.5212	406.452 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOGP010000001.1 Salmonella enterica strain PNUSAS363047 SAMN36452338-rid18793523.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOGP010000028.1 Salmonella enterica strain PNUSAS363047 SAMN36452338-rid18793523.guided.24, whole genome shotgun sequence	1266..1703	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOGP010000017.1 Salmonella enterica strain PNUSAS363047 SAMN36452338-rid18793523.denovo.18, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABNOGP010000014.1 Salmonella enterica strain PNUSAS363047 SAMN36452338-rid18793523.denovo.14, whole genome shotgun sequence	37108..37369																																																avrA	ABNOGP010000002.1	585348..586217	99.54	870	0						
GCA_032512925.1_PDT001817420.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOGT010000001.1 Salmonella enterica strain PNUSAS363046 SAMN36452336-rid18793483.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOGT010000026.1 Salmonella enterica strain PNUSAS363046 SAMN36452336-rid18793483.guided.20, whole genome shotgun sequence	3572..4009	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOGT010000018.1 Salmonella enterica strain PNUSAS363046 SAMN36452336-rid18793483.denovo.19, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNOGT010000019.1 Salmonella enterica strain PNUSAS363046 SAMN36452336-rid18793483.denovo.22, whole genome shotgun sequence	3364..3625																																																avrA	ABNOGT010000002.1	553636..554505	99.54	870	0						
GCA_032512945.1_PDT001817421.1_genomic.fna	Salmonella_enterica	0.5219	209.19 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOGS010000001.1 Salmonella enterica strain PNUSAS363048 SAMN36452340-rid18793493.denovo.01, whole genome shotgun sequence	381670..382107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOGS010000045.1 Salmonella enterica strain PNUSAS363048 SAMN36452340-rid18793493.guided.33, whole genome shotgun sequence	10871..11308	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNOGS010000003.1	208425..209293	99.77	870	0						
GCA_032513165.1_PDT001817395.1_genomic.fna	Salmonella_enterica	0.5214	201.422 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNOHP010000001.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.denovo.01, whole genome shotgun sequence	360483..360920	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNOHP010000029.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.denovo.30, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNOHP010000029.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.denovo.30, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNOHP010000045.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.denovo.50, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNOHP010000045.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.denovo.50, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNOHP010000054.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.denovo.61, whole genome shotgun sequence	93..908	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	X62115	aadA1	99.75	792/792	ABNOHP010000057.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.guided.31, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNOHP010000057.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.guided.31, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNOHP010000059.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.guided.42, whole genome shotgun sequence	7707..8144	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNOHP010000060.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.guided.49, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNOHP010000060.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.guided.49, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNOHP010000062.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.guided.58, whole genome shotgun sequence	128..943	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	X62115	sul1	100	840/840	ABNOHP010000029.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.denovo.30, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNOHP010000057.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.guided.31, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNOHP010000029.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.denovo.30, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNOHP010000057.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.guided.31, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNOHP010000034.1 Salmonella enterica strain PNUSAS362976 SAMN36451958-rid18793233.denovo.36, whole genome shotgun sequence	9109..9668																																																						avrA	ABNOHP010000002.1	39430..40299	99.655	870	0						
GCA_032513205.1_PDT001817412.1_genomic.fna	Salmonella_enterica	0.5224	440.072 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNOHB010000001.1 Salmonella enterica strain PNUSAS363011 SAMN36452035-rid18793403.denovo.01, whole genome shotgun sequence	481955..482392	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNOHB010000023.1 Salmonella enterica strain PNUSAS363011 SAMN36452035-rid18793403.guided.19, whole genome shotgun sequence	5125..5562	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNOHB010000002.1	553798..554667	99.77	870	0						
GCA_032513245.1_PDT001817394.1_genomic.fna	Salmonella_enterica	0.521	283.819 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOHR010000001.1 Salmonella enterica strain PNUSAS362966 SAMN36451949-rid18793223.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOHR010000031.1 Salmonella enterica strain PNUSAS362966 SAMN36451949-rid18793223.guided.20, whole genome shotgun sequence	43181..43618	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOHR010000022.1 Salmonella enterica strain PNUSAS362966 SAMN36451949-rid18793223.denovo.25, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABNOHR010000024.1 Salmonella enterica strain PNUSAS362966 SAMN36451949-rid18793223.denovo.27, whole genome shotgun sequence	3384..3645																																																avrA	ABNOHR010000006.1	175109..175978	99.54	870	0						
GCA_032513285.1_PDT001817411.1_genomic.fna	Salmonella_enterica	0.5206	490.113 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOHC010000001.1 Salmonella enterica strain PNUSAS363008 SAMN36452034-rid18793393.denovo.01, whole genome shotgun sequence	774419..774856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOHC010000027.1 Salmonella enterica strain PNUSAS363008 SAMN36452034-rid18793393.guided.19, whole genome shotgun sequence	9831..10268	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOHC010000019.1 Salmonella enterica strain PNUSAS363008 SAMN36452034-rid18793393.denovo.20, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNOHC010000015.1 Salmonella enterica strain PNUSAS363008 SAMN36452034-rid18793393.denovo.15, whole genome shotgun sequence	4978..5239		enterobacteriales	IncX1	98.93	374 / 374	ABNOHC010000016.1 Salmonella enterica strain PNUSAS363008 SAMN36452034-rid18793393.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNOHC010000002.1	553362..554231	99.54	870	0						
GCA_032513345.1_PDT001817410.1_genomic.fna	Salmonella_enterica	0.5207	200.222 KB	8	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncI1-I(Alpha),IncP1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOHE010000002.1 Salmonella enterica strain PNUSAS363009 SAMN36452036-rid18793383.denovo.02, whole genome shotgun sequence	380331..380768	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOHE010000050.1 Salmonella enterica strain PNUSAS363009 SAMN36452036-rid18793383.guided.36, whole genome shotgun sequence	4506..4943	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNOHE010000022.1 Salmonella enterica strain PNUSAS363009 SAMN36452036-rid18793383.denovo.22, whole genome shotgun sequence	67221..67362	enterobacteriales	IncP1	98.52	745 / 745	ABNOHE010000026.1 Salmonella enterica strain PNUSAS363009 SAMN36452036-rid18793383.denovo.26, whole genome shotgun sequence	6769..7513																																																											
GCA_032513365.1_PDT001817409.1_genomic.fna	Salmonella_enterica	0.5213	430.47 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOHD010000001.1 Salmonella enterica strain PNUSAS363015 SAMN36452037-rid18793373.denovo.01, whole genome shotgun sequence	384598..385035	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOHD010000046.1 Salmonella enterica strain PNUSAS363015 SAMN36452037-rid18793373.guided.28, whole genome shotgun sequence	2145..2582	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOHD010000002.1	504334..505204	99.196	871	0						
GCA_032513405.1_PDT001817408.1_genomic.fna	Salmonella_enterica	0.5213	238.65 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOHF010000002.1 Salmonella enterica strain PNUSAS363010 SAMN36452030-rid18793363.denovo.02, whole genome shotgun sequence	115024..115461	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOHF010000049.1 Salmonella enterica strain PNUSAS363010 SAMN36452030-rid18793363.guided.38, whole genome shotgun sequence	2572..3009	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNOHF010000007.1	154652..155520	99.77	870	0						
GCA_032513425.1_PDT001817407.1_genomic.fna	Salmonella_enterica	0.5211	222.782 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOHG010000001.1 Salmonella enterica strain PNUSAS363014 SAMN36452033-rid18793353.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOHG010000050.1 Salmonella enterica strain PNUSAS363014 SAMN36452033-rid18793353.guided.32, whole genome shotgun sequence	12405..12842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOHG010000017.1 Salmonella enterica strain PNUSAS363014 SAMN36452033-rid18793353.denovo.17, whole genome shotgun sequence	68502..69144	enterobacteriales	IncFII(S)	100	262 / 262	ABNOHG010000017.1 Salmonella enterica strain PNUSAS363014 SAMN36452033-rid18793353.denovo.17, whole genome shotgun sequence	84229..84490																																																avrA	ABNOHG010000008.1	145796..146665	99.885	870	0						
GCA_032513485.1_PDT001817406.1_genomic.fna	Salmonella_enterica	0.5215	278.67 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOHI010000001.1 Salmonella enterica strain PNUSAS363006 SAMN36452028-rid18793343.denovo.01, whole genome shotgun sequence	581083..581520	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOHI010000039.1 Salmonella enterica strain PNUSAS363006 SAMN36452028-rid18793343.denovo.44, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOHI010000039.1 Salmonella enterica strain PNUSAS363006 SAMN36452028-rid18793343.denovo.44, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNOHI010000051.1 Salmonella enterica strain PNUSAS363006 SAMN36452028-rid18793343.guided.33, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOHI010000054.1 Salmonella enterica strain PNUSAS363006 SAMN36452028-rid18793343.guided.43, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOHI010000054.1 Salmonella enterica strain PNUSAS363006 SAMN36452028-rid18793343.guided.43, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNOHI010000041.1 Salmonella enterica strain PNUSAS363006 SAMN36452028-rid18793343.denovo.47, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNOHI010000055.1 Salmonella enterica strain PNUSAS363006 SAMN36452028-rid18793343.guided.46, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNOHI010000039.1 Salmonella enterica strain PNUSAS363006 SAMN36452028-rid18793343.denovo.44, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNOHI010000054.1 Salmonella enterica strain PNUSAS363006 SAMN36452028-rid18793343.guided.43, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNOHI010000035.1 Salmonella enterica strain PNUSAS363006 SAMN36452028-rid18793343.denovo.39, whole genome shotgun sequence	1172..2377	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNOHI010000053.1 Salmonella enterica strain PNUSAS363006 SAMN36452028-rid18793343.guided.38, whole genome shotgun sequence	3783..4988	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNOHI010000002.1	433633..434502	99.885	870	0						
GCA_032513525.1_PDT001817404.1_genomic.fna	Salmonella_enterica	0.5231	301.185 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOHL010000001.1 Salmonella enterica strain PNUSAS363007 SAMN36452032-rid18793323.denovo.01, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOHL010000037.1 Salmonella enterica strain PNUSAS363007 SAMN36452032-rid18793323.guided.26, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032513545.1_PDT001817405.1_genomic.fna	Salmonella_enterica	0.5212	406.452 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOHH010000001.1 Salmonella enterica strain PNUSAS363005 SAMN36452029-rid18793333.denovo.01, whole genome shotgun sequence	780619..781056	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOHH010000026.1 Salmonella enterica strain PNUSAS363005 SAMN36452029-rid18793333.guided.19, whole genome shotgun sequence	7233..7670	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOHH010000019.1 Salmonella enterica strain PNUSAS363005 SAMN36452029-rid18793333.denovo.21, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNOHH010000016.1 Salmonella enterica strain PNUSAS363005 SAMN36452029-rid18793333.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNOHH010000002.1	585342..586211	99.54	870	0						
GCA_032513565.1_PDT001817402.1_genomic.fna	Salmonella_enterica	0.5217	336.653 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOHM010000002.1 Salmonella enterica strain PNUSAS363012 SAMN36452031-rid18793303.denovo.02, whole genome shotgun sequence	462165..462602	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOHM010000032.1 Salmonella enterica strain PNUSAS363012 SAMN36452031-rid18793303.guided.23, whole genome shotgun sequence	6419..6856	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOHM010000001.1	551334..552203	99.195	870	0						
GCA_032513605.1_PDT001817403.1_genomic.fna	Salmonella_enterica	0.5215	361.677 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	Col440I,Col8282,ColRNAI,IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOHJ010000001.1 Salmonella enterica strain PNUSAS363013 SAMN36452027-rid18793313.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOHJ010000039.1 Salmonella enterica strain PNUSAS363013 SAMN36452027-rid18793313.guided.17, whole genome shotgun sequence	30276..30713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	ABNOHJ010000027.1 Salmonella enterica strain PNUSAS363013 SAMN36452027-rid18793313.denovo.30, whole genome shotgun sequence	1566..1675	enterobacteriales	Col8282	90.1	202 / 207	ABNOHJ010000024.1 Salmonella enterica strain PNUSAS363013 SAMN36452027-rid18793313.denovo.27, whole genome shotgun sequence	416..617		enterobacteriales	ColRNAI	90.08	131 / 130	ABNOHJ010000022.1 Salmonella enterica strain PNUSAS363013 SAMN36452027-rid18793313.denovo.25, whole genome shotgun sequence	3010..3140		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNOHJ010000014.1 Salmonella enterica strain PNUSAS363013 SAMN36452027-rid18793313.denovo.14, whole genome shotgun sequence	15839..15980																																		avrA	ABNOHJ010000008.1	39350..40219	98.966	870	0						
GCA_032513785.1_PDT001817393.1_genomic.fna	Salmonella_enterica	0.5215	198.444 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOHS010000001.1 Salmonella enterica strain PNUSAS362971 SAMN36451951-rid18793213.denovo.01, whole genome shotgun sequence	233303..233740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOHS010000040.1 Salmonella enterica strain PNUSAS362971 SAMN36451951-rid18793213.guided.27, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNOHS010000002.1	207907..208775	99.77	870	0						
GCA_032513845.1_PDT001817391.1_genomic.fna	Salmonella_enterica	0.5197	129.568 KB	12	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_523,thrA_22	2544	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_523	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNOHT010000005.1 Salmonella enterica strain PNUSAS362975 SAMN36451956-rid18793193.denovo.05, whole genome shotgun sequence	72808..73245	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNOHT010000061.1 Salmonella enterica strain PNUSAS362975 SAMN36451956-rid18793193.guided.40, whole genome shotgun sequence	20092..20529	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNOHT010000037.1 Salmonella enterica strain PNUSAS362975 SAMN36451956-rid18793193.denovo.38, whole genome shotgun sequence	11253..11895																																																																	
GCA_032513865.1_PDT001817392.1_genomic.fna	Salmonella_enterica	0.5208	143.505 KB	12	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_150,thrA_22	464	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_150	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNOHU010000005.1 Salmonella enterica strain PNUSAS362967 SAMN36451947-rid18793203.denovo.05, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNOHU010000071.1 Salmonella enterica strain PNUSAS362967 SAMN36451947-rid18793203.guided.35, whole genome shotgun sequence	19231..19668	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNOHU010000039.1 Salmonella enterica strain PNUSAS362967 SAMN36451947-rid18793203.denovo.40, whole genome shotgun sequence	6133..6775																																																																	
GCA_032513885.1_PDT001817390.1_genomic.fna	Salmonella_enterica	0.5207	191.426 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOHV010000001.1 Salmonella enterica strain PNUSAS362969 SAMN36451952-rid18793183.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOHV010000049.1 Salmonella enterica strain PNUSAS362969 SAMN36451952-rid18793183.guided.32, whole genome shotgun sequence	23642..24079	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNOHV010000006.1	174491..175359	99.77	870	0						
GCA_032513965.1_PDT001817389.1_genomic.fna	Salmonella_enterica	0.5223	255.932 KB	7	aroC_15,dnaN_126,hemD_101,hisD_88,purE_8,sucA_19,thrA_18	446	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_126	hemD	100	100	hemD_101	hisD	100	100	hisD_88	purE	100	100	purE_8	sucA	100	100	sucA_19	thrA	100	100	thrA_18	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNOHW010000004.1 Salmonella enterica strain PNUSAS362972 SAMN36451955-rid18793173.denovo.04, whole genome shotgun sequence	54606..55043	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNOHW010000035.1 Salmonella enterica strain PNUSAS362972 SAMN36451955-rid18793173.guided.27, whole genome shotgun sequence	29932..30369	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNOHW010000022.1	39413..40282	99.77	870	0						
GCA_032513985.1_PDT001817388.1_genomic.fna	Salmonella_enterica	0.5226	397.026 KB	4	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOHX010000001.1 Salmonella enterica strain PNUSAS362964 SAMN36451957-rid18793163.denovo.01, whole genome shotgun sequence	791116..791553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOHX010000028.1 Salmonella enterica strain PNUSAS362964 SAMN36451957-rid18793163.guided.21, whole genome shotgun sequence	2279..2716	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032514025.1_PDT001817386.1_genomic.fna	Salmonella_enterica	0.5202	260.403 KB	6	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	1	parC_p.T57S	1	IncFII,IncFII	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOIA010000001.1 Salmonella enterica strain PNUSAS362968 SAMN36451950-rid18793143.denovo.01, whole genome shotgun sequence	414591..415028	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOIA010000033.1 Salmonella enterica strain PNUSAS362968 SAMN36451950-rid18793143.guided.22, whole genome shotgun sequence	15851..16288	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNOIA010000022.1 Salmonella enterica strain PNUSAS362968 SAMN36451950-rid18793143.denovo.23, whole genome shotgun sequence	21535..22395	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNOIA010000034.1 Salmonella enterica strain PNUSAS362968 SAMN36451950-rid18793143.guided.27, whole genome shotgun sequence	7375..8235	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII	99.24	262 / 261	ABNOIA010000022.1 Salmonella enterica strain PNUSAS362968 SAMN36451950-rid18793143.denovo.23, whole genome shotgun sequence	25761..26022	enterobacteriales	IncFII	99.24	262 / 261	ABNOIA010000034.1 Salmonella enterica strain PNUSAS362968 SAMN36451950-rid18793143.guided.27, whole genome shotgun sequence	11601..11862																																																											
GCA_032514035.1_PDT001817387.1_genomic.fna	Salmonella_enterica	0.5222	152.399 KB	10	aroC_346,dnaN_4,hemD_8,hisD_125,purE_76,sucA_19,thrA_101	2208	9:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_346	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_125	purE	100	100	purE_76	sucA	100	100	sucA_19	thrA	100	100	thrA_101	9	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Lome		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNOHY010000003.1 Salmonella enterica strain PNUSAS362970 SAMN36451953-rid18793153.denovo.03, whole genome shotgun sequence	44..481	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNOHY010000052.1 Salmonella enterica strain PNUSAS362970 SAMN36451953-rid18793153.guided.33, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOHY010000006.1	39428..40297	98.966	870	0						
GCA_032514125.1_PDT001817384.1_genomic.fna	Salmonella_enterica	0.5199	197.613 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	3	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,tet(B),tet(B)	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOID010000001.1 Salmonella enterica strain PNUSAS362965 SAMN36451948-rid18793123.denovo.01, whole genome shotgun sequence	145387..145824	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOID010000064.1 Salmonella enterica strain PNUSAS362965 SAMN36451948-rid18793123.guided.27, whole genome shotgun sequence	35858..36295	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNOID010000056.1 Salmonella enterica strain PNUSAS362965 SAMN36451948-rid18793123.denovo.60, whole genome shotgun sequence	817..1677	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNOID010000068.1 Salmonella enterica strain PNUSAS362965 SAMN36451948-rid18793123.guided.61, whole genome shotgun sequence	460..1320	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(B)	100	1206/1206	ABNOID010000045.1 Salmonella enterica strain PNUSAS362965 SAMN36451948-rid18793123.denovo.49, whole genome shotgun sequence	423..1628	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNOID010000067.1 Salmonella enterica strain PNUSAS362965 SAMN36451948-rid18793123.guided.48, whole genome shotgun sequence	4471..5676	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col156	94.81	154 / 154	ABNOID010000050.1 Salmonella enterica strain PNUSAS362965 SAMN36451948-rid18793123.denovo.54, whole genome shotgun sequence	792..945																																																						avrA	ABNOID010000002.1	433639..434508	99.885	870	0						
GCA_032514185.1_PDT001817385.1_genomic.fna	Salmonella_enterica	0.5212	368.712 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOIB010000001.1 Salmonella enterica strain PNUSAS362973 SAMN36451954-rid18793133.denovo.01, whole genome shotgun sequence	129855..130292	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOIB010000033.1 Salmonella enterica strain PNUSAS362973 SAMN36451954-rid18793133.guided.23, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOIB010000022.1 Salmonella enterica strain PNUSAS362973 SAMN36451954-rid18793133.denovo.25, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNOIB010000024.1 Salmonella enterica strain PNUSAS362973 SAMN36451954-rid18793133.denovo.27, whole genome shotgun sequence	3402..3663																																																avrA	ABNOIB010000002.1	553077..553946	99.54	870	0						
GCA_032514205.1_PDT001817383.1_genomic.fna	Salmonella_enterica	0.5207	149.139 KB	11	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNOIC010000009.1 Salmonella enterica strain PNUSAS362974 SAMN36451946-rid18793113.denovo.09, whole genome shotgun sequence	29908..30342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNOIC010000065.1 Salmonella enterica strain PNUSAS362974 SAMN36451946-rid18793113.guided.42, whole genome shotgun sequence	4943..5377	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032514465.1_PDT001817287.1_genomic.fna	Salmonella_enterica	0.5208	420.98 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	1	gyrA_p.S83F	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOIK010000005.1 Salmonella enterica strain PNUSAS362859 SAMN36451478-rid18792153.denovo.05, whole genome shotgun sequence	159454..159891	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOIK010000020.1 Salmonella enterica strain PNUSAS362859 SAMN36451478-rid18792153.denovo.21, whole genome shotgun sequence	31733..32569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOIK010000020.1 Salmonella enterica strain PNUSAS362859 SAMN36451478-rid18792153.denovo.21, whole genome shotgun sequence	30930..31733	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNOIK010000035.1 Salmonella enterica strain PNUSAS362859 SAMN36451478-rid18792153.guided.26, whole genome shotgun sequence	8082..8519	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOIK010000036.1 Salmonella enterica strain PNUSAS362859 SAMN36451478-rid18792153.guided.28, whole genome shotgun sequence	4810..5646	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOIK010000036.1 Salmonella enterica strain PNUSAS362859 SAMN36451478-rid18792153.guided.28, whole genome shotgun sequence	4007..4810	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNOIK010000020.1 Salmonella enterica strain PNUSAS362859 SAMN36451478-rid18792153.denovo.21, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNOIK010000033.1 Salmonella enterica strain PNUSAS362859 SAMN36451478-rid18792153.guided.23, whole genome shotgun sequence	25227..26372	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNOIK010000020.1 Salmonella enterica strain PNUSAS362859 SAMN36451478-rid18792153.denovo.21, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNOIK010000036.1 Salmonella enterica strain PNUSAS362859 SAMN36451478-rid18792153.guided.28, whole genome shotgun sequence	3131..3946	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNOIK010000020.1 Salmonella enterica strain PNUSAS362859 SAMN36451478-rid18792153.denovo.21, whole genome shotgun sequence	33830..35104	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNOIK010000036.1 Salmonella enterica strain PNUSAS362859 SAMN36451478-rid18792153.guided.28, whole genome shotgun sequence	6907..8181	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNOIK010000019.1 Salmonella enterica strain PNUSAS362859 SAMN36451478-rid18792153.denovo.20, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNOIK010000016.1 Salmonella enterica strain PNUSAS362859 SAMN36451478-rid18792153.denovo.16, whole genome shotgun sequence	16913..17172		enterobacteriales	IncX1	98.66	374 / 374	ABNOIK010000016.1 Salmonella enterica strain PNUSAS362859 SAMN36451478-rid18792153.denovo.16, whole genome shotgun sequence	52767..53140																																									avrA	ABNOIK010000001.1	505420..506288	99.54	870	0						
GCA_032514645.1_PDT001817279.1_genomic.fna	Salmonella_enterica	0.5209	279.635 KB	7	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOIR010000011.1 Salmonella enterica strain PNUSAS362858 SAMN36451477-rid18792073.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOIR010000037.1 Salmonella enterica strain PNUSAS362858 SAMN36451477-rid18792073.guided.30, whole genome shotgun sequence	9148..9585	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNOIR010000022.1 Salmonella enterica strain PNUSAS362858 SAMN36451477-rid18792073.denovo.22, whole genome shotgun sequence	34957..35490																																																						avrA	ABNOIR010000010.1	39401..40267	98.966	870	0						
GCA_032514665.1_PDT001817278.1_genomic.fna	Salmonella_enterica	0.5224	363.973 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOIT010000001.1 Salmonella enterica strain PNUSAS362857 SAMN36451476-rid18792063.denovo.01, whole genome shotgun sequence	790286..790723	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOIT010000029.1 Salmonella enterica strain PNUSAS362857 SAMN36451476-rid18792063.guided.15, whole genome shotgun sequence	10647..11084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOIT010000004.1	183099..183968	98.966	870	0						
GCA_032514685.1_PDT001817277.1_genomic.fna	Salmonella_enterica	0.5176	150.032 KB	10	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOIS010000012.1 Salmonella enterica strain 23SC06CH01-S1 isolate SALM23-0411 SAMN36450220-rid18792053.denovo.012, whole genome shotgun sequence	81214..81651	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOIS010000035.1 Salmonella enterica strain 23SC06CH01-S1 isolate SALM23-0411 SAMN36450220-rid18792053.denovo.035, whole genome shotgun sequence	4338..5174	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNOIS010000035.1 Salmonella enterica strain 23SC06CH01-S1 isolate SALM23-0411 SAMN36450220-rid18792053.denovo.035, whole genome shotgun sequence	3536..4338	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNOIS010000035.1 Salmonella enterica strain 23SC06CH01-S1 isolate SALM23-0411 SAMN36450220-rid18792053.denovo.035, whole genome shotgun sequence	3535..4338	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNOIS010000035.1 Salmonella enterica strain 23SC06CH01-S1 isolate SALM23-0411 SAMN36450220-rid18792053.denovo.035, whole genome shotgun sequence	3535..4338	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNOIS010000035.1 Salmonella enterica strain 23SC06CH01-S1 isolate SALM23-0411 SAMN36450220-rid18792053.denovo.035, whole genome shotgun sequence	3535..4338	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNOIS010000101.1 Salmonella enterica strain 23SC06CH01-S1 isolate SALM23-0411 SAMN36450220-rid18792053.guided.056, whole genome shotgun sequence	4379..5215	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNOIS010000101.1 Salmonella enterica strain 23SC06CH01-S1 isolate SALM23-0411 SAMN36450220-rid18792053.guided.056, whole genome shotgun sequence	3577..4379	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNOIS010000101.1 Salmonella enterica strain 23SC06CH01-S1 isolate SALM23-0411 SAMN36450220-rid18792053.guided.056, whole genome shotgun sequence	3576..4379	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNOIS010000101.1 Salmonella enterica strain 23SC06CH01-S1 isolate SALM23-0411 SAMN36450220-rid18792053.guided.056, whole genome shotgun sequence	3576..4379	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNOIS010000101.1 Salmonella enterica strain 23SC06CH01-S1 isolate SALM23-0411 SAMN36450220-rid18792053.guided.056, whole genome shotgun sequence	3576..4379	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNOIS010000103.1 Salmonella enterica strain 23SC06CH01-S1 isolate SALM23-0411 SAMN36450220-rid18792053.guided.086, whole genome shotgun sequence	626..1063	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	291 / 327	ABNOIS010000059.1 Salmonella enterica strain 23SC06CH01-S1 isolate SALM23-0411 SAMN36450220-rid18792053.denovo.062, whole genome shotgun sequence	1..291	enterobacteriales	IncHI2A	99.52	630 / 630	ABNOIS010000045.1 Salmonella enterica strain 23SC06CH01-S1 isolate SALM23-0411 SAMN36450220-rid18792053.denovo.045, whole genome shotgun sequence	6807..7436		enterobacteriales	IncX1	100	373 / 373	ABNOIS010000061.1 Salmonella enterica strain 23SC06CH01-S1 isolate SALM23-0411 SAMN36450220-rid18792053.denovo.064, whole genome shotgun sequence	2153..2525																																									avrA	ABNOIS010000014.1	97393..98262	99.655	870	0						
GCA_032518005.1_PDT001817101.1_genomic.fna	Salmonella_enterica	0.52	272.685 KB	7	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOMB010000007.1 Salmonella enterica strain PNUSAS362834 SAMN36449411-rid18791063.denovo.07, whole genome shotgun sequence	90503..90940	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOMB010000060.1 Salmonella enterica strain PNUSAS362834 SAMN36449411-rid18791063.guided.40, whole genome shotgun sequence	3336..3773	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNOMB010000028.1 Salmonella enterica strain PNUSAS362834 SAMN36449411-rid18791063.denovo.28, whole genome shotgun sequence	11451..12093																																																						avrA	ABNOMB010000002.1	187263..188132	99.425	870	0						
GCA_032518045.1_PDT001817099.1_genomic.fna	Salmonella_enterica	0.5226	370.26 KB	4	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNOMA010000001.1 Salmonella enterica strain 23SC06GT06-S1 isolate SALM23-0410 SAMN36450221-rid18791043.denovo.01, whole genome shotgun sequence	1374582..1375019	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOMA010000018.1 Salmonella enterica strain 23SC06GT06-S1 isolate SALM23-0410 SAMN36450221-rid18791043.denovo.23, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNOMA010000018.1 Salmonella enterica strain 23SC06GT06-S1 isolate SALM23-0410 SAMN36450221-rid18791043.denovo.23, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNOMA010000018.1 Salmonella enterica strain 23SC06GT06-S1 isolate SALM23-0410 SAMN36450221-rid18791043.denovo.23, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNOMA010000018.1 Salmonella enterica strain 23SC06GT06-S1 isolate SALM23-0410 SAMN36450221-rid18791043.denovo.23, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNOMA010000018.1 Salmonella enterica strain 23SC06GT06-S1 isolate SALM23-0410 SAMN36450221-rid18791043.denovo.23, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNOMA010000033.1 Salmonella enterica strain 23SC06GT06-S1 isolate SALM23-0410 SAMN36450221-rid18791043.guided.22, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNOMA010000033.1 Salmonella enterica strain 23SC06GT06-S1 isolate SALM23-0410 SAMN36450221-rid18791043.guided.22, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNOMA010000033.1 Salmonella enterica strain 23SC06GT06-S1 isolate SALM23-0410 SAMN36450221-rid18791043.guided.22, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNOMA010000033.1 Salmonella enterica strain 23SC06GT06-S1 isolate SALM23-0410 SAMN36450221-rid18791043.guided.22, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNOMA010000033.1 Salmonella enterica strain 23SC06GT06-S1 isolate SALM23-0410 SAMN36450221-rid18791043.guided.22, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNOMA010000019.1 Salmonella enterica strain 23SC06GT06-S1 isolate SALM23-0410 SAMN36450221-rid18791043.denovo.25, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNOMA010000034.1 Salmonella enterica strain 23SC06GT06-S1 isolate SALM23-0410 SAMN36450221-rid18791043.guided.24, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																													parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOMA010000008.1	140063..140932	99.655	870	0						
GCA_032518145.1_PDT001817094.1_genomic.fna	Salmonella_enterica	0.5222	341.367 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOME010000003.1 Salmonella enterica strain PNUSAS362825 SAMN36449414-rid18790993.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOME010000042.1 Salmonella enterica strain PNUSAS362825 SAMN36449414-rid18790993.guided.34, whole genome shotgun sequence	935..1372	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOME010000016.1 Salmonella enterica strain PNUSAS362825 SAMN36449414-rid18790993.denovo.16, whole genome shotgun sequence	48442..49084	enterobacteriales	IncFII(S)	100	262 / 262	ABNOME010000016.1 Salmonella enterica strain PNUSAS362825 SAMN36449414-rid18790993.denovo.16, whole genome shotgun sequence	64169..64430																																																avrA	ABNOME010000001.1	446614..447482	100	869	0						
GCA_032518165.1_PDT001817098.1_genomic.fna	Salmonella_enterica	0.5211	413.228 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOMC010000001.1 Salmonella enterica strain PNUSAS362835 SAMN36449408-rid18791033.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOMC010000030.1 Salmonella enterica strain PNUSAS362835 SAMN36449408-rid18791033.guided.26, whole genome shotgun sequence	243..680	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOMC010000019.1 Salmonella enterica strain PNUSAS362835 SAMN36449408-rid18791033.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNOMC010000021.1 Salmonella enterica strain PNUSAS362835 SAMN36449408-rid18791033.denovo.23, whole genome shotgun sequence	3415..3676																																																avrA	ABNOMC010000002.1	553636..554505	99.54	870	0						
GCA_032518485.1_PDT001817078.1_genomic.fna	Salmonella_enterica	0.5219	361.909 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNOMP010000003.1 Salmonella enterica strain PNUSAS362822 SAMN36449399-rid18790833.denovo.03, whole genome shotgun sequence	487225..487662	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNOMP010000028.1 Salmonella enterica strain PNUSAS362822 SAMN36449399-rid18790833.guided.24, whole genome shotgun sequence	1038..1475	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOMP010000001.1	94222..95091	98.966	870	0						
GCA_032518505.1_PDT001817077.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOMQ010000001.1 Salmonella enterica strain PNUSAS362827 SAMN36449409-rid18790823.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOMQ010000025.1 Salmonella enterica strain PNUSAS362827 SAMN36449409-rid18790823.guided.21, whole genome shotgun sequence	1710..2147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABNOMQ010000002.1	553636..554505	99.54	870	0						
GCA_032518525.1_PDT001817076.1_genomic.fna	Salmonella_enterica	0.5215	375.755 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOMR010000001.1 Salmonella enterica strain PNUSAS362828 SAMN36449416-rid18790813.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOMR010000032.1 Salmonella enterica strain PNUSAS362828 SAMN36449416-rid18790813.guided.25, whole genome shotgun sequence	8794..9231	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOMR010000022.1 Salmonella enterica strain PNUSAS362828 SAMN36449416-rid18790813.denovo.23, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNOMR010000024.1 Salmonella enterica strain PNUSAS362828 SAMN36449416-rid18790813.denovo.26, whole genome shotgun sequence	3412..3673																																																avrA	ABNOMR010000002.1	553636..554505	99.54	870	0						
GCA_032518565.1_PDT001817073.1_genomic.fna	Salmonella_enterica	0.5206	406.451 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOMU010000001.1 Salmonella enterica strain PNUSAS362826 SAMN36449410-rid18790783.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOMU010000031.1 Salmonella enterica strain PNUSAS362826 SAMN36449410-rid18790783.guided.27, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOMU010000016.1 Salmonella enterica strain PNUSAS362826 SAMN36449410-rid18790783.denovo.16, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNOMU010000022.1 Salmonella enterica strain PNUSAS362826 SAMN36449410-rid18790783.denovo.24, whole genome shotgun sequence	3386..3647		enterobacteriales	IncX1	98.93	374 / 374	ABNOMU010000018.1 Salmonella enterica strain PNUSAS362826 SAMN36449410-rid18790783.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABNOMU010000002.1	553684..554553	99.54	870	0						
GCA_032518585.1_PDT001817070.1_genomic.fna	Salmonella_enterica	0.5201	242.644 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNOMX010000007.1 Salmonella enterica strain PNUSAS362824 SAMN36449406-rid18790753.denovo.07, whole genome shotgun sequence	136301..136738	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNOMX010000049.1 Salmonella enterica strain PNUSAS362824 SAMN36449406-rid18790753.guided.42, whole genome shotgun sequence	1890..2327	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.16	643 / 643	ABNOMX010000025.1 Salmonella enterica strain PNUSAS362824 SAMN36449406-rid18790753.denovo.25, whole genome shotgun sequence	34087..34729																																																																	
GCA_032518605.1_PDT001817071.1_genomic.fna	Salmonella_enterica	0.52	384.594 KB	5	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(A),tet(A)	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNOMW010000002.1 Salmonella enterica strain PNUSAS362832 SAMN36449415-rid18790763.denovo.02, whole genome shotgun sequence	165177..165614	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNOMW010000033.1 Salmonella enterica strain PNUSAS362832 SAMN36449415-rid18790763.guided.23, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNOMW010000026.1 Salmonella enterica strain PNUSAS362832 SAMN36449415-rid18790763.denovo.29, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNOMW010000036.1 Salmonella enterica strain PNUSAS362832 SAMN36449415-rid18790763.guided.31, whole genome shotgun sequence	687..1331	Ciprofloxacin	EU432277	tet(A)	99.83	1200/1200	ABNOMW010000023.1 Salmonella enterica strain PNUSAS362832 SAMN36449415-rid18790763.denovo.24, whole genome shotgun sequence	3910..5109	Doxycycline, Tetracycline	AJ517790	tet(A)	99.83	1200/1200	ABNOMW010000035.1 Salmonella enterica strain PNUSAS362832 SAMN36449415-rid18790763.guided.28, whole genome shotgun sequence	1576..2775	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNOMW010000026.1 Salmonella enterica strain PNUSAS362832 SAMN36449415-rid18790763.denovo.29, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNOMW010000036.1 Salmonella enterica strain PNUSAS362832 SAMN36449415-rid18790763.guided.31, whole genome shotgun sequence	31..161																																																avrA	ABNOMW010000001.1	526597..527466	99.425	870	0						
GCA_032518625.1_PDT001817068.1_genomic.fna	Salmonella_enterica	0.5199	304.379 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOMZ010000001.1 Salmonella enterica strain PNUSAS362829 SAMN36449407-rid18790733.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.48	369/438	ABNOMZ010000032.1 Salmonella enterica strain PNUSAS362829 SAMN36449407-rid18790733.guided.28, whole genome shotgun sequence	1..369	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOMZ010000025.1 Salmonella enterica strain PNUSAS362829 SAMN36449407-rid18790733.denovo.25, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNOMZ010000026.1 Salmonella enterica strain PNUSAS362829 SAMN36449407-rid18790733.denovo.26, whole genome shotgun sequence	3423..3684																																																avrA	ABNOMZ010000002.1	176518..177387	99.54	870	0						
GCA_032518645.1_PDT001817069.1_genomic.fna	Salmonella_enterica	0.5212	238.812 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	17	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-VIa,aadA1,aph(3')-Ia,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-VIa,aadA1,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-94,blaCMY-2,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,sul2,sul1,sul1,sul2,tet(B),tet(M),tet(A),tet(B),tet(A),tet(A),tet(M),dfrA34,dfrA34	0		4	Col(pHAD28),ColRNAI,IncC,IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOMY010000001.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.01, whole genome shotgun sequence	581225..581662	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOMY010000026.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.26, whole genome shotgun sequence	280..1116	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOMY010000026.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.26, whole genome shotgun sequence	1116..1919	Streptomycin	AF321551	aac(3)-VIa	100	903/903	ABNOMY010000041.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.42, whole genome shotgun sequence	11082..11984	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	90.67	772/792	ABNOMY010000041.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.42, whole genome shotgun sequence	12148..12919	Spectinomycin, Streptomycin	FJ591054	aph(3')-Ia	100	816/816	ABNOMY010000045.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.49, whole genome shotgun sequence	1930..2745	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EU722351	aph(3')-Ia	100	816/816	ABNOMY010000081.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.50, whole genome shotgun sequence	3412..4227	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EU722351	aac(6')-Iaa	100	438/438	ABNOMY010000083.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.58, whole genome shotgun sequence	1032..1469	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOMY010000084.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.60, whole genome shotgun sequence	2452..3288	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOMY010000084.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.60, whole genome shotgun sequence	1649..2452	Streptomycin	AF321551	aac(3)-VIa	100	903/903	ABNOMY010000087.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.65, whole genome shotgun sequence	60..962	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	90.67	772/792	ABNOMY010000091.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.77, whole genome shotgun sequence	84..855	Spectinomycin, Streptomycin	FJ591054	blaCMY-2	100	1146/1146	ABNOMY010000026.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.26, whole genome shotgun sequence	31136..32281	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNOMY010000062.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.76, whole genome shotgun sequence	147..970	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNOMY010000062.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.76, whole genome shotgun sequence	147..970	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNOMY010000062.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.76, whole genome shotgun sequence	147..970	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-94	99.91	1146/1146	ABNOMY010000078.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.43, whole genome shotgun sequence	2923..4068	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	JX514368	blaCMY-2	99.91	1146/1146	ABNOMY010000078.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.43, whole genome shotgun sequence	2923..4068	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNOMY010000079.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.44, whole genome shotgun sequence	2923..4068	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNOMY010000090.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.75, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNOMY010000090.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.75, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNOMY010000090.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.75, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNOMY010000026.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.26, whole genome shotgun sequence	1980..2795	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNOMY010000041.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.42, whole genome shotgun sequence	4243..5082	Sulfamethoxazole	U12338	sul1	100	840/840	ABNOMY010000082.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.52, whole genome shotgun sequence	401..1240	Sulfamethoxazole	U12338	sul2	100	816/816	ABNOMY010000084.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.60, whole genome shotgun sequence	773..1588	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNOMY010000035.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.35, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	99.17	1920/1920	ABNOMY010000047.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.53, whole genome shotgun sequence	1149..3068	Doxycycline, Tetracycline, Minocycline	U58985	tet(A)	100	1226/1275	ABNOMY010000057.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.70, whole genome shotgun sequence	960..2185	Doxycycline, Tetracycline	AF534183	tet(B)	100	1206/1206	ABNOMY010000085.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.61, whole genome shotgun sequence	1800..3005	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNOMY010000086.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.64, whole genome shotgun sequence	1056..2255	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABNOMY010000088.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.66, whole genome shotgun sequence	981..2255	Doxycycline, Tetracycline	AF534183	tet(M)	99.17	1920/1920	ABNOMY010000089.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.67, whole genome shotgun sequence	151..2070	Doxycycline, Tetracycline, Minocycline	U58985	dfrA34	100	588/588	ABNOMY010000041.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.42, whole genome shotgun sequence	1470..2057	Trimethoprim	JYRF01000065	dfrA34	100	588/588	ABNOMY010000082.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.guided.52, whole genome shotgun sequence	3426..4013	Trimethoprim	JYRF01000065																																																																																																																																																																																																																																							enterobacteriales	Col(pHAD28)	91.15	113 / 131	ABNOMY010000050.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.56, whole genome shotgun sequence	1410..1522	enterobacteriales	ColRNAI	90.08	131 / 130	ABNOMY010000045.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.49, whole genome shotgun sequence	810..940		enterobacteriales	IncC	100	417 / 417	ABNOMY010000042.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.46, whole genome shotgun sequence	2657..3073		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNOMY010000018.1 Salmonella enterica strain PNUSAS362821 SAMN36449413-rid18790743.denovo.18, whole genome shotgun sequence	70653..70794																																		avrA	ABNOMY010000002.1	434604..435473	99.885	870	0						
GCA_032518665.1_PDT001817067.1_genomic.fna	Salmonella_enterica	0.5214	228.906 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNONA010000001.1 Salmonella enterica strain PNUSAS362831 SAMN36449397-rid18790723.denovo.01, whole genome shotgun sequence	565301..565738	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNONA010000033.1 Salmonella enterica strain PNUSAS362831 SAMN36449397-rid18790723.guided.26, whole genome shotgun sequence	3194..3631	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNONA010000026.1 Salmonella enterica strain PNUSAS362831 SAMN36449397-rid18790723.denovo.32, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNONA010000037.1 Salmonella enterica strain PNUSAS362831 SAMN36449397-rid18790723.guided.31, whole genome shotgun sequence	946..1590	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNONA010000026.1 Salmonella enterica strain PNUSAS362831 SAMN36449397-rid18790723.denovo.32, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNONA010000037.1 Salmonella enterica strain PNUSAS362831 SAMN36449397-rid18790723.guided.31, whole genome shotgun sequence	290..420																																																avrA	ABNONA010000010.1	150591..151459	99.195	870	0						
GCA_032518685.1_PDT001817065.1_genomic.fna	Salmonella_enterica	0.5213	376.187 KB	6	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNONB010000001.1 Salmonella enterica strain PNUSAS362823 SAMN36449400-rid18790703.denovo.01, whole genome shotgun sequence	453864..454301	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNONB010000055.1 Salmonella enterica strain PNUSAS362823 SAMN36449400-rid18790703.guided.34, whole genome shotgun sequence	441..878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNONB010000024.1 Salmonella enterica strain PNUSAS362823 SAMN36449400-rid18790703.denovo.24, whole genome shotgun sequence	11971..12613																																																						avrA	ABNONB010000003.1	139986..140854	99.31	870	0						
GCA_032518705.1_PDT001817066.1_genomic.fna	Salmonella_enterica	0.5214	406.453 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNONC010000001.1 Salmonella enterica strain PNUSAS362830 SAMN36449398-rid18790713.denovo.01, whole genome shotgun sequence	176098..176535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNONC010000032.1 Salmonella enterica strain PNUSAS362830 SAMN36449398-rid18790713.guided.28, whole genome shotgun sequence	909..1346	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNONC010000022.1 Salmonella enterica strain PNUSAS362830 SAMN36449398-rid18790713.denovo.22, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNONC010000023.1 Salmonella enterica strain PNUSAS362830 SAMN36449398-rid18790713.denovo.25, whole genome shotgun sequence	3382..3643																																																avrA	ABNONC010000002.1	553678..554547	99.54	870	0						
GCA_032518725.1_PDT001817064.1_genomic.fna	Salmonella_enterica	0.5212	225.554 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOND010000002.1 Salmonella enterica strain PNUSAS362833 SAMN36449401-rid18790693.denovo.02, whole genome shotgun sequence	68378..68815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOND010000053.1 Salmonella enterica strain PNUSAS362833 SAMN36449401-rid18790693.guided.48, whole genome shotgun sequence	122..559	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNOND010000003.1	175008..175876	100	869	0						
GCA_032518745.1_PDT001817061.1_genomic.fna	Salmonella_enterica	0.524	38.225 KB	37	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	-:z:l,w	7	aac(6')-Iaa,aph(3'')-Ib,aph(6)-Id,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,floR,floR,qnrS1,qnrS1,sul2,sul2,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),p0111	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	-	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:z:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNONF010000053.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.denovo.053, whole genome shotgun sequence	14126..14563	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	99.88	804/804	ABNONF010000216.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.denovo.223, whole genome shotgun sequence	806..1609	Streptomycin	AF321551	aph(6)-Id	100	800/831	ABNONF010000216.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.denovo.223, whole genome shotgun sequence	1..800	Streptomycin	CP000971	aac(6')-Iaa	99.09	438/438	ABNONF010000275.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.guided.164, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNONF010000278.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.guided.219, whole genome shotgun sequence	854..1684	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	ABNONF010000278.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.guided.219, whole genome shotgun sequence	45..848	Streptomycin	AF321551	floR	98.11	1214/1215	ABNONF010000177.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.denovo.180, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNONF010000279.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.guided.222, whole genome shotgun sequence	60..1273	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNONF010000209.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.denovo.214, whole genome shotgun sequence	121..777	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNONF010000280.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.guided.231, whole genome shotgun sequence	656..1312	Ciprofloxacin	AB187515	sul2	100	786/819	ABNONF010000235.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.denovo.244, whole genome shotgun sequence	1..786	Sulfamethoxazole	AJ514834	sul2	100	786/852	ABNONF010000235.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.denovo.244, whole genome shotgun sequence	1..786	Sulfamethoxazole	FJ197818	sul2	100	786/816	ABNONF010000235.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.denovo.244, whole genome shotgun sequence	1..786	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNONF010000281.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.guided.241, whole genome shotgun sequence	236..1051	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNONF010000176.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.denovo.179, whole genome shotgun sequence	1556..2830	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	ABNONF010000276.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.guided.183, whole genome shotgun sequence	557..1756	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABNONF010000277.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.guided.205, whole genome shotgun sequence	482..1756	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNONF010000194.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.denovo.198, whole genome shotgun sequence	1708..1838	enterobacteriales	p0111	98.64	885 / 885	ABNONF010000185.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS22313487 SAMN36439838-rid18790653.denovo.189, whole genome shotgun sequence	1186..2070																																																avrA	ABNONF010000016.1	62335..63204	99.08	870	0						
GCA_032518785.1_PDT001817060.1_genomic.fna	Salmonella_enterica	0.5248	32.765 KB	41	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNONG010000059.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313479 SAMN36439802-rid18790643.denovo.059, whole genome shotgun sequence	11313..11750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNONG010000243.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313479 SAMN36439802-rid18790643.guided.129, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNONG010000024.1	43590..44459	99.425	870	0						
GCA_032518825.1_PDT001817074.1_genomic.fna	Salmonella_enterica	0.521	218.743 KB	8	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOMT010000014.1 Salmonella enterica strain PNUSAS362836 SAMN36449412-rid18790793.denovo.14, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOMT010000055.1 Salmonella enterica strain PNUSAS362836 SAMN36449412-rid18790793.guided.39, whole genome shotgun sequence	6287..6724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNOMT010000023.1 Salmonella enterica strain PNUSAS362836 SAMN36449412-rid18790793.denovo.23, whole genome shotgun sequence	34957..35490																																																						avrA	ABNOMT010000004.1	39478..40344	98.966	870	0						
GCA_032518885.1_PDT001817059.1_genomic.fna	Salmonella_enterica	0.5234	40.359 KB	42	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNONI010000062.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313539 SAMN36439799-rid18790633.denovo.062, whole genome shotgun sequence	12476..12913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNONI010000259.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313539 SAMN36439799-rid18790633.guided.120, whole genome shotgun sequence	12042..12479	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNONI010000105.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313539 SAMN36439799-rid18790633.denovo.106, whole genome shotgun sequence	1549..2694	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNONI010000258.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313539 SAMN36439799-rid18790633.guided.108, whole genome shotgun sequence	1231..2376	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNONI010000145.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313539 SAMN36439799-rid18790633.denovo.149, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNONI010000261.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313539 SAMN36439799-rid18790633.guided.154, whole genome shotgun sequence	3336..4151	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNONI010000145.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313539 SAMN36439799-rid18790633.denovo.149, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNONI010000261.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313539 SAMN36439799-rid18790633.guided.154, whole genome shotgun sequence	6328..7527	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNONI010000182.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313539 SAMN36439799-rid18790633.denovo.187, whole genome shotgun sequence	371..501	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNONI010000183.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313539 SAMN36439799-rid18790633.denovo.188, whole genome shotgun sequence	3134..3264		enterobacteriales	IncC	100	417 / 417	ABNONI010000038.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313539 SAMN36439799-rid18790633.denovo.038, whole genome shotgun sequence	38349..38765																																									avrA	ABNONI010000011.1	61667..62536	99.885	870	0						
GCA_032518905.1_PDT001817056.1_genomic.fna	Salmonella_enterica	0.5215	214.543 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNONK010000001.1 Salmonella enterica strain PNUSAS362819 SAMN36439141-rid18790603.denovo.01, whole genome shotgun sequence	193040..193477	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNONK010000056.1 Salmonella enterica strain PNUSAS362819 SAMN36439141-rid18790603.guided.33, whole genome shotgun sequence	10131..10568	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNONK010000036.1 Salmonella enterica strain PNUSAS362819 SAMN36439141-rid18790603.denovo.38, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNONK010000027.1 Salmonella enterica strain PNUSAS362819 SAMN36439141-rid18790603.denovo.27, whole genome shotgun sequence	5032..5293																																																avrA	ABNONK010000005.1	149437..150306	99.54	870	0						
GCA_032518945.1_PDT001817058.1_genomic.fna	Salmonella_enterica	0.5209	30.45 KB	47	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	3	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aph(6)-Id	100	837/837	ABNONJ010000035.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313495 SAMN36439777-rid18790623.denovo.035, whole genome shotgun sequence	4338..5174	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNONJ010000035.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313495 SAMN36439777-rid18790623.denovo.035, whole genome shotgun sequence	3536..4338	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNONJ010000035.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313495 SAMN36439777-rid18790623.denovo.035, whole genome shotgun sequence	3535..4338	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNONJ010000035.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313495 SAMN36439777-rid18790623.denovo.035, whole genome shotgun sequence	3535..4338	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNONJ010000035.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313495 SAMN36439777-rid18790623.denovo.035, whole genome shotgun sequence	3535..4338	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNONJ010000103.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313495 SAMN36439777-rid18790623.denovo.105, whole genome shotgun sequence	1687..2124	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNONJ010000348.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313495 SAMN36439777-rid18790623.guided.140, whole genome shotgun sequence	8128..8565	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNONJ010000349.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313495 SAMN36439777-rid18790623.guided.184, whole genome shotgun sequence	3262..4098	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNONJ010000349.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313495 SAMN36439777-rid18790623.guided.184, whole genome shotgun sequence	2460..3262	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNONJ010000349.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313495 SAMN36439777-rid18790623.guided.184, whole genome shotgun sequence	2459..3262	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNONJ010000349.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313495 SAMN36439777-rid18790623.guided.184, whole genome shotgun sequence	2459..3262	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNONJ010000349.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313495 SAMN36439777-rid18790623.guided.184, whole genome shotgun sequence	2459..3262	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	291 / 327	ABNONJ010000173.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313495 SAMN36439777-rid18790623.denovo.176, whole genome shotgun sequence	1..291	enterobacteriales	IncHI2A	99.52	630 / 630	ABNONJ010000123.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313495 SAMN36439777-rid18790623.denovo.125, whole genome shotgun sequence	728..1357		enterobacteriales	IncX1	100	373 / 373	ABNONJ010000227.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313495 SAMN36439777-rid18790623.denovo.231, whole genome shotgun sequence	2242..2614																																									avrA	ABNONJ010000007.1	61245..62114	99.655	870	0						
GCA_032518965.1_PDT001817050.1_genomic.fna	Salmonella_enterica	0.5239	61.484 KB	28	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNONO010000019.1 Salmonella enterica subsp. enterica serovar Berta strain FSIS22313494 SAMN36439775-rid18790543.denovo.019, whole genome shotgun sequence	17193..17630	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNONO010000178.1 Salmonella enterica subsp. enterica serovar Berta strain FSIS22313494 SAMN36439775-rid18790543.guided.068, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNONO010000123.1 Salmonella enterica subsp. enterica serovar Berta strain FSIS22313494 SAMN36439775-rid18790543.denovo.126, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNONO010000134.1 Salmonella enterica subsp. enterica serovar Berta strain FSIS22313494 SAMN36439775-rid18790543.denovo.137, whole genome shotgun sequence	2528..2639																																																avrA	ABNONO010000025.1	61649..62517	99.425	870	0						
GCA_032519025.1_PDT001817049.1_genomic.fna	Salmonella_enterica	0.5229	40.107 KB	37	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	2	Col156,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNONP010000068.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313541 SAMN36439800-rid18790533.denovo.068, whole genome shotgun sequence	11358..11795	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNONP010000149.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313541 SAMN36439800-rid18790533.denovo.152, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNONP010000149.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313541 SAMN36439800-rid18790533.denovo.152, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNONP010000149.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313541 SAMN36439800-rid18790533.denovo.152, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNONP010000149.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313541 SAMN36439800-rid18790533.denovo.152, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNONP010000149.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313541 SAMN36439800-rid18790533.denovo.152, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNONP010000218.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313541 SAMN36439800-rid18790533.guided.118, whole genome shotgun sequence	482..919	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNONP010000220.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313541 SAMN36439800-rid18790533.guided.159, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNONP010000220.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313541 SAMN36439800-rid18790533.guided.159, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNONP010000220.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313541 SAMN36439800-rid18790533.guided.159, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNONP010000220.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313541 SAMN36439800-rid18790533.guided.159, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNONP010000220.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313541 SAMN36439800-rid18790533.guided.159, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNONP010000158.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313541 SAMN36439800-rid18790533.denovo.163, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNONP010000221.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313541 SAMN36439800-rid18790533.guided.162, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	ABNONP010000164.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313541 SAMN36439800-rid18790533.denovo.169, whole genome shotgun sequence	792..945	enterobacteriales	IncX1	98.93	374 / 374	ABNONP010000210.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313541 SAMN36439800-rid18790533.denovo.215, whole genome shotgun sequence	169..542																																																avrA	ABNONP010000035.1	39546..40415	99.655	870	0						
GCA_032519045.1_PDT001817048.1_genomic.fna	Salmonella_enterica	0.5238	39.383 KB	41	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNONQ010000006.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313496 SAMN36439778-rid18790523.denovo.006, whole genome shotgun sequence	75559..75996	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNONQ010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313496 SAMN36439778-rid18790523.denovo.065, whole genome shotgun sequence	22857..23648	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNONQ010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313496 SAMN36439778-rid18790523.denovo.065, whole genome shotgun sequence	22857..23648	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNONQ010000249.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313496 SAMN36439778-rid18790523.guided.105, whole genome shotgun sequence	10911..11348	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNONQ010000253.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313496 SAMN36439778-rid18790523.guided.140, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNONQ010000253.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313496 SAMN36439778-rid18790523.guided.140, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNONQ010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313496 SAMN36439778-rid18790523.denovo.065, whole genome shotgun sequence	21513..22352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNONQ010000253.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313496 SAMN36439778-rid18790523.guided.140, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNONQ010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313496 SAMN36439778-rid18790523.denovo.065, whole genome shotgun sequence	7797..8996	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNONQ010000250.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313496 SAMN36439778-rid18790523.guided.110, whole genome shotgun sequence	6098..7297	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNONQ010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313496 SAMN36439778-rid18790523.denovo.150, whole genome shotgun sequence	5632..6191																																																						avrA	ABNONQ010000038.1	39430..40299	99.655	870	0						
GCA_032519085.1_PDT001817046.1_genomic.fna	Salmonella_enterica	0.5224	34.62 KB	44	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNONT010000063.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313488 SAMN36439839-rid18790503.denovo.063, whole genome shotgun sequence	12339..12776	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNONT010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313488 SAMN36439839-rid18790503.denovo.131, whole genome shotgun sequence	6180..7016	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNONT010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313488 SAMN36439839-rid18790503.denovo.131, whole genome shotgun sequence	7016..7819	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNONT010000309.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313488 SAMN36439839-rid18790503.guided.138, whole genome shotgun sequence	7116..7553	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNONT010000311.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313488 SAMN36439839-rid18790503.guided.161, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNONT010000311.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313488 SAMN36439839-rid18790503.guided.161, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNONT010000207.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313488 SAMN36439839-rid18790503.denovo.212, whole genome shotgun sequence	1803..3008	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNONT010000313.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313488 SAMN36439839-rid18790503.guided.211, whole genome shotgun sequence	1834..3039	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNONT010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313488 SAMN36439839-rid18790503.denovo.198, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNONT010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313488 SAMN36439839-rid18790503.denovo.131, whole genome shotgun sequence	5296..5557		enterobacteriales	IncFII	96.95	262 / 261	ABNONT010000311.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313488 SAMN36439839-rid18790503.guided.161, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNONT010000227.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313488 SAMN36439839-rid18790503.denovo.232, whole genome shotgun sequence	224..365		enterobacteriales	IncX1	100	373 / 373	ABNONT010000239.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313488 SAMN36439839-rid18790503.denovo.244, whole genome shotgun sequence	1101..1473																											avrA	ABNONT010000028.1	39350..40219	99.655	870	0						
GCA_032519105.1_PDT001817047.1_genomic.fna	Salmonella_enterica	0.5241	41.567 KB	36	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_58,thrA_4	412	-:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col156,ColpVC,ColpVC	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNONS010000064.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22313482 SAMN36439836-rid18790513.denovo.064, whole genome shotgun sequence	11341..11778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNONS010000214.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22313482 SAMN36439836-rid18790513.guided.085, whole genome shotgun sequence	7831..8268	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	96.1	154 / 154	ABNONS010000160.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22313482 SAMN36439836-rid18790513.denovo.162, whole genome shotgun sequence	483..636	enterobacteriales	ColpVC	96.89	193 / 193	ABNONS010000173.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22313482 SAMN36439836-rid18790513.denovo.176, whole genome shotgun sequence	1524..1716		enterobacteriales	ColpVC	98.96	193 / 193	ABNONS010000178.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22313482 SAMN36439836-rid18790513.denovo.181, whole genome shotgun sequence	805..997																																									avrA	ABNONS010000033.1	39348..40217	99.54	870	0						
GCA_032519185.1_PDT001817041.1_genomic.fna	Salmonella_enterica	0.5237	44.961 KB	37	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	10	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,fosA3,fosA3,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNONX010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.denovo.015, whole genome shotgun sequence	12358..12795	Amikacin, Tobramycin	NC_003197	aadA1	99.62	792/792	ABNONX010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.denovo.088, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JX185132	aadA1	99.62	792/792	ABNONX010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.denovo.088, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNONX010000150.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.denovo.154, whole genome shotgun sequence	1053..2078	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNONX010000150.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.denovo.154, whole genome shotgun sequence	48..824	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNONX010000194.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.denovo.203, whole genome shotgun sequence	93..908	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	aadA1	99.62	792/792	ABNONX010000220.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.guided.092, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.62	792/792	ABNONX010000220.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.guided.092, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNONX010000221.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.guided.099, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNONX010000225.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.guided.160, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNONX010000225.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.guided.160, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNONX010000228.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.guided.199, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	fosA3	100	417/417	ABNONX010000174.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.denovo.182, whole genome shotgun sequence	320..736	Fosfomycin	AB522970	fosA3	100	417/417	ABNONX010000227.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.guided.180, whole genome shotgun sequence	361..777	Fosfomycin	AB522970	floR	98.19	1214/1215	ABNONX010000148.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.denovo.152, whole genome shotgun sequence	3189..4402	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNONX010000224.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.guided.156, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNONX010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.denovo.088, whole genome shotgun sequence	17100..17939	Sulfamethoxazole	U12338	sul1	100	840/840	ABNONX010000220.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.guided.092, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNONX010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.denovo.088, whole genome shotgun sequence	3384..4583	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNONX010000220.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.guided.092, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNONX010000159.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.denovo.165, whole genome shotgun sequence	101..574	Trimethoprim	AF393510	dfrA14	100	474/474	ABNONX010000226.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.guided.175, whole genome shotgun sequence	132..605	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNONX010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313492 SAMN36439718-rid18790453.denovo.078, whole genome shotgun sequence	21519..22078																																																						avrA	ABNONX010000031.1	39349..40218	99.655	870	0						
GCA_032519205.1_PDT001817040.1_genomic.fna	Salmonella_enterica	0.5233	77.815 KB	18	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOOA010000024.1 Salmonella enterica strain PNUSAS362817 SAMN36439138-rid18790443.denovo.024, whole genome shotgun sequence	12531..12968	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOOA010000112.1 Salmonella enterica strain PNUSAS362817 SAMN36439138-rid18790443.guided.053, whole genome shotgun sequence	20549..20986	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032519245.1_PDT001817038.1_genomic.fna	Salmonella_enterica	0.5236	32.162 KB	45	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOOC010000059.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313486 SAMN36439837-rid18790423.denovo.059, whole genome shotgun sequence	12374..12811	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOOC010000304.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313486 SAMN36439837-rid18790423.guided.173, whole genome shotgun sequence	5699..6136	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	ABNOOC010000191.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313486 SAMN36439837-rid18790423.denovo.194, whole genome shotgun sequence	1973..2654	enterobacteriales	IncFII	96.56	262 / 261	ABNOOC010000037.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313486 SAMN36439837-rid18790423.denovo.037, whole genome shotgun sequence	32750..33011		enterobacteriales	IncX1	100	373 / 373	ABNOOC010000224.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313486 SAMN36439837-rid18790423.denovo.227, whole genome shotgun sequence	1128..1500																																									avrA	ABNOOC010000027.1	39474..40343	99.655	870	0						
GCA_032519285.1_PDT001817036.1_genomic.fna	Salmonella_enterica	0.5237	32.571 KB	46	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOOB010000096.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313481 SAMN36439840-rid18790403.denovo.096, whole genome shotgun sequence	11330..11767	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOOB010000277.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313481 SAMN36439840-rid18790403.guided.105, whole genome shotgun sequence	7383..7820	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNOOB010000016.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313481 SAMN36439840-rid18790403.denovo.016, whole genome shotgun sequence	36034..36849	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNOOB010000280.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313481 SAMN36439840-rid18790403.guided.158, whole genome shotgun sequence	3131..3946	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNOOB010000016.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313481 SAMN36439840-rid18790403.denovo.016, whole genome shotgun sequence	39026..40225	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNOOB010000280.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313481 SAMN36439840-rid18790403.guided.158, whole genome shotgun sequence	6123..7322	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncC	100	417 / 417	ABNOOB010000200.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313481 SAMN36439840-rid18790403.denovo.204, whole genome shotgun sequence	1582..1998																																																						avrA	ABNOOB010000011.1	61654..62523	99.885	870	0						
GCA_032519325.1_PDT001817035.1_genomic.fna	Salmonella_enterica	0.5221	48.338 KB	32	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	-:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	-	Salmonella enterica subspecies enterica (subspecies I)	I -:i:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOOE010000065.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313493 SAMN36439776-rid18790393.denovo.067, whole genome shotgun sequence	11321..11758	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOOE010000140.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313493 SAMN36439776-rid18790393.denovo.144, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOOE010000140.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313493 SAMN36439776-rid18790393.denovo.144, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNOOE010000191.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313493 SAMN36439776-rid18790393.guided.066, whole genome shotgun sequence	15468..15905	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOOE010000193.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313493 SAMN36439776-rid18790393.guided.142, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOOE010000193.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313493 SAMN36439776-rid18790393.guided.142, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNOOE010000164.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313493 SAMN36439776-rid18790393.denovo.169, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNOOE010000194.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313493 SAMN36439776-rid18790393.guided.165, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNOOE010000140.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313493 SAMN36439776-rid18790393.denovo.144, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNOOE010000193.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313493 SAMN36439776-rid18790393.guided.142, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNOOE010000115.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313493 SAMN36439776-rid18790393.denovo.118, whole genome shotgun sequence	2288..3493	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNOOE010000195.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313493 SAMN36439776-rid18790393.guided.170, whole genome shotgun sequence	149..1354	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNOOE010000006.1	93863..94732	99.885	870	0						
GCA_032519345.1_PDT001817032.1_genomic.fna	Salmonella_enterica	0.5229	36.6 KB	39	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNOOG010000012.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313538 SAMN36439798-rid18790363.denovo.012, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNOOG010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313538 SAMN36439798-rid18790363.denovo.086, whole genome shotgun sequence	18462..19253	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNOOG010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313538 SAMN36439798-rid18790363.denovo.086, whole genome shotgun sequence	18462..19253	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNOOG010000266.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313538 SAMN36439798-rid18790363.guided.099, whole genome shotgun sequence	6197..6634	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNOOG010000268.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313538 SAMN36439798-rid18790363.guided.131, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNOOG010000268.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313538 SAMN36439798-rid18790363.guided.131, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNOOG010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313538 SAMN36439798-rid18790363.denovo.086, whole genome shotgun sequence	17118..17957	Sulfamethoxazole	U12338	sul1	100	840/840	ABNOOG010000268.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313538 SAMN36439798-rid18790363.guided.131, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNOOG010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313538 SAMN36439798-rid18790363.denovo.086, whole genome shotgun sequence	3402..4601	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNOOG010000269.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313538 SAMN36439798-rid18790363.guided.162, whole genome shotgun sequence	1895..3094	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNOOG010000162.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313538 SAMN36439798-rid18790363.denovo.167, whole genome shotgun sequence	2159..2718	enterobacteriales	IncX1	98.93	374 / 374	ABNOOG010000229.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313538 SAMN36439798-rid18790363.denovo.234, whole genome shotgun sequence	570..943																																																avrA	ABNOOG010000034.1	39430..40299	99.655	870	0						
GCA_032519365.1_PDT001817033.1_genomic.fna	Salmonella_enterica	0.5252	42.423 KB	33	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOOF010000055.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313478 SAMN36439801-rid18790373.denovo.056, whole genome shotgun sequence	12569..13006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOOF010000201.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313478 SAMN36439801-rid18790373.guided.117, whole genome shotgun sequence	8291..8728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032519385.1_PDT001817031.1_genomic.fna	Salmonella_enterica	0.5237	43.622 KB	39	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNOOJ010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.denovo.063, whole genome shotgun sequence	12592..13029	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNOOJ010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.denovo.087, whole genome shotgun sequence	18455..19246	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNOOJ010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.denovo.087, whole genome shotgun sequence	18455..19246	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNOOJ010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.denovo.160, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNOOJ010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.denovo.160, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNOOJ010000236.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.guided.090, whole genome shotgun sequence	14165..14602	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNOOJ010000239.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.guided.110, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNOOJ010000239.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.guided.110, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNOOJ010000240.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.guided.172, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNOOJ010000240.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.guided.172, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNOOJ010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.denovo.177, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNOOJ010000242.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.guided.176, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNOOJ010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.denovo.168, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNOOJ010000241.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.guided.173, whole genome shotgun sequence	844..2057	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNOOJ010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.denovo.087, whole genome shotgun sequence	17111..17950	Sulfamethoxazole	U12338	sul1	100	840/840	ABNOOJ010000239.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.guided.110, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNOOJ010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.denovo.087, whole genome shotgun sequence	3395..4594	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNOOJ010000243.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.guided.195, whole genome shotgun sequence	1925..3124	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNOOJ010000172.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.denovo.179, whole genome shotgun sequence	143..616	Trimethoprim	AF393510	dfrA14	100	474/474	ABNOOJ010000244.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.guided.196, whole genome shotgun sequence	164..637	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNOOJ010000182.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313497 SAMN36439779-rid18790353.denovo.189, whole genome shotgun sequence	977..1536																																																						avrA	ABNOOJ010000014.1	62096..62965	99.655	870	0						
GCA_032519785.1_PDT001817010.1_genomic.fna	Salmonella_enterica	0.5211	206.605 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOPB010000001.1 Salmonella enterica strain PNUSAS362818 SAMN36439140-rid18790143.denovo.01, whole genome shotgun sequence	384375..384812	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOPB010000050.1 Salmonella enterica strain PNUSAS362818 SAMN36439140-rid18790143.guided.19, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOPB010000023.1 Salmonella enterica strain PNUSAS362818 SAMN36439140-rid18790143.denovo.24, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNOPB010000023.1 Salmonella enterica strain PNUSAS362818 SAMN36439140-rid18790143.denovo.24, whole genome shotgun sequence	5032..5293																																																avrA	ABNOPB010000002.1	149505..150374	99.54	870	0						
GCA_032519805.1_PDT001817008.1_genomic.fna	Salmonella_enterica	0.5222	90.578 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOPF010000018.1 Salmonella enterica strain PNUSAS362815 SAMN36439142-rid18790123.denovo.18, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOPF010000083.1 Salmonella enterica strain PNUSAS362815 SAMN36439142-rid18790123.guided.45, whole genome shotgun sequence	36759..37196	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOPF010000015.1 Salmonella enterica strain PNUSAS362815 SAMN36439142-rid18790123.denovo.15, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNOPF010000015.1 Salmonella enterica strain PNUSAS362815 SAMN36439142-rid18790123.denovo.15, whole genome shotgun sequence	22546..22807																																																avrA	ABNOPF010000022.1	43810..44678	100	869	0						
GCA_032519825.1_PDT001817009.1_genomic.fna	Salmonella_enterica	0.5219	104.082 KB	16	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOPC010000022.1 Salmonella enterica strain PNUSAS362820 SAMN36439143-rid18790133.denovo.22, whole genome shotgun sequence	20192..20629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOPC010000095.1 Salmonella enterica strain PNUSAS362820 SAMN36439143-rid18790133.guided.49, whole genome shotgun sequence	12385..12822	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOPC010000028.1 Salmonella enterica strain PNUSAS362820 SAMN36439143-rid18790133.denovo.28, whole genome shotgun sequence	9424..10066	enterobacteriales	IncFII(S)	100	262 / 262	ABNOPC010000028.1 Salmonella enterica strain PNUSAS362820 SAMN36439143-rid18790133.denovo.28, whole genome shotgun sequence	54058..54319																																																avrA	ABNOPC010000005.1	99053..99922	99.54	870	0						
GCA_032519845.1_PDT001817007.1_genomic.fna	Salmonella_enterica	0.5219	113.741 KB	13	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOPE010000002.1 Salmonella enterica strain PNUSAS362816 SAMN36439137-rid18790113.denovo.02, whole genome shotgun sequence	81852..82289	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOPE010000084.1 Salmonella enterica strain PNUSAS362816 SAMN36439137-rid18790113.guided.30, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOPE010000005.1	140203..141071	99.195	870	0						
GCA_032519905.1_PDT001817006.1_genomic.fna	Salmonella_enterica	0.5214	121.176 KB	13	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	-:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	-	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:m,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOPG010000004.1 Salmonella enterica strain PNUSAS362814 SAMN36439139-rid18790103.denovo.04, whole genome shotgun sequence	80724..81161	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOPG010000079.1 Salmonella enterica strain PNUSAS362814 SAMN36439139-rid18790103.guided.55, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032520185.1_PDT001816984.1_genomic.fna	Salmonella_enterica	0.5209	251.572 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOPL010000001.1 Salmonella enterica strain PNUSAS362674 SAMN36433956-rid18789883.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOPL010000047.1 Salmonella enterica strain PNUSAS362674 SAMN36433956-rid18789883.guided.21, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOPL010000025.1 Salmonella enterica strain PNUSAS362674 SAMN36433956-rid18789883.denovo.26, whole genome shotgun sequence	44721..45363	enterobacteriales	IncFII(S)	100	262 / 262	ABNOPL010000025.1 Salmonella enterica strain PNUSAS362674 SAMN36433956-rid18789883.denovo.26, whole genome shotgun sequence	29375..29636																																																avrA	ABNOPL010000003.1	175018..175886	100	869	0						
GCA_032520205.1_PDT001816983.1_genomic.fna	Salmonella_enterica	0.5214	208.05 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOPN010000001.1 Salmonella enterica strain PNUSAS362785 SAMN36437704-rid18789873.denovo.01, whole genome shotgun sequence	207360..207797	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOPN010000046.1 Salmonella enterica strain PNUSAS362785 SAMN36437704-rid18789873.guided.26, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOPN010000025.1 Salmonella enterica strain PNUSAS362785 SAMN36437704-rid18789873.denovo.25, whole genome shotgun sequence	44708..45350	enterobacteriales	IncFII(S)	100	262 / 262	ABNOPN010000025.1 Salmonella enterica strain PNUSAS362785 SAMN36437704-rid18789873.denovo.25, whole genome shotgun sequence	29383..29644																																																avrA	ABNOPN010000006.1	95300..96169	99.885	870	0						
GCA_032520245.1_PDT001816982.1_genomic.fna	Salmonella_enterica	0.5193	123.873 KB	15	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOPM010000019.1 Salmonella enterica strain 23NM06CL01-S1 isolate PNUSAS362780 SAMN36437485-rid18789863.denovo.019, whole genome shotgun sequence	75499..75936	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOPM010000105.1 Salmonella enterica strain 23NM06CL01-S1 isolate PNUSAS362780 SAMN36437485-rid18789863.guided.069, whole genome shotgun sequence	4109..4546	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNOPM010000073.1 Salmonella enterica strain 23NM06CL01-S1 isolate PNUSAS362780 SAMN36437485-rid18789863.denovo.076, whole genome shotgun sequence	763..893	enterobacteriales	IncHI2A	99.52	630 / 630	ABNOPM010000062.1 Salmonella enterica strain 23NM06CL01-S1 isolate PNUSAS362780 SAMN36437485-rid18789863.denovo.064, whole genome shotgun sequence	5615..6244		enterobacteriales	IncX1	100	373 / 373	ABNOPM010000056.1 Salmonella enterica strain 23NM06CL01-S1 isolate PNUSAS362780 SAMN36437485-rid18789863.denovo.058, whole genome shotgun sequence	2153..2525																																									avrA	ABNOPM010000020.1	102634..103503	99.655	870	0						
GCA_032520305.1_PDT001816978.1_genomic.fna	Salmonella_enterica	0.522	580.7 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNOPQ010000001.1 Salmonella enterica strain PNUSAS362703 SAMN36438768-rid18789823.denovo.01, whole genome shotgun sequence	510631..511068	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNOPQ010000022.1 Salmonella enterica strain PNUSAS362703 SAMN36438768-rid18789823.guided.14, whole genome shotgun sequence	30205..30642	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOPQ010000003.1	406341..407209	99.425	870	0						
GCA_032520325.1_PDT001816976.1_genomic.fna	Salmonella_enterica	0.5209	359.468 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pSL483	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNOPU010000008.1 Salmonella enterica strain PNUSAS362723 SAMN36438478-rid18789803.denovo.08, whole genome shotgun sequence	70822..71259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNOPU010000036.1 Salmonella enterica strain PNUSAS362723 SAMN36438478-rid18789803.guided.26, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pSL483	91.87	996 / 995	ABNOPU010000020.1 Salmonella enterica strain PNUSAS362723 SAMN36438478-rid18789803.denovo.21, whole genome shotgun sequence	24492..25486																																																						avrA	ABNOPU010000002.1	131917..132786	98.966	870	0						
GCA_032520345.1_PDT001816971.1_genomic.fna	Salmonella_enterica	0.5204	364.439 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		2	IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOPX010000001.1 Salmonella enterica strain PNUSAS362684 SAMN36433953-rid18789753.denovo.01, whole genome shotgun sequence	774552..774989	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOPX010000017.1 Salmonella enterica strain PNUSAS362684 SAMN36433953-rid18789753.denovo.19, whole genome shotgun sequence	19105..19941	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOPX010000017.1 Salmonella enterica strain PNUSAS362684 SAMN36433953-rid18789753.denovo.19, whole genome shotgun sequence	19941..20744	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNOPX010000027.1 Salmonella enterica strain PNUSAS362684 SAMN36433953-rid18789753.guided.18, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOPX010000028.1 Salmonella enterica strain PNUSAS362684 SAMN36433953-rid18789753.guided.22, whole genome shotgun sequence	7213..8049	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOPX010000028.1 Salmonella enterica strain PNUSAS362684 SAMN36433953-rid18789753.guided.22, whole genome shotgun sequence	6410..7213	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNOPX010000020.1 Salmonella enterica strain PNUSAS362684 SAMN36433953-rid18789753.denovo.25, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNOPX010000030.1 Salmonella enterica strain PNUSAS362684 SAMN36433953-rid18789753.guided.24, whole genome shotgun sequence	3944..4804	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNOPX010000017.1 Salmonella enterica strain PNUSAS362684 SAMN36433953-rid18789753.denovo.19, whole genome shotgun sequence	20805..21620	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNOPX010000028.1 Salmonella enterica strain PNUSAS362684 SAMN36433953-rid18789753.guided.22, whole genome shotgun sequence	5534..6349	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNOPX010000017.1 Salmonella enterica strain PNUSAS362684 SAMN36433953-rid18789753.denovo.19, whole genome shotgun sequence	25133..26332	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNOPX010000028.1 Salmonella enterica strain PNUSAS362684 SAMN36433953-rid18789753.guided.22, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncN	100	514 / 514	ABNOPX010000017.1 Salmonella enterica strain PNUSAS362684 SAMN36433953-rid18789753.denovo.19, whole genome shotgun sequence	822..1335	enterobacteriales	IncX1	98.66	374 / 374	ABNOPX010000015.1 Salmonella enterica strain PNUSAS362684 SAMN36433953-rid18789753.denovo.16, whole genome shotgun sequence	6057..6430																																																avrA	ABNOPX010000004.1	174827..175696	99.54	870	0						
GCA_032520405.1_PDT001816964.1_genomic.fna	Salmonella_enterica	0.521	307.105 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOQD010000011.1 Salmonella enterica strain PNUSAS362746 SAMN36436813-rid18789683.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOQD010000040.1 Salmonella enterica strain PNUSAS362746 SAMN36436813-rid18789683.guided.25, whole genome shotgun sequence	28587..29024	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNOQD010000022.1 Salmonella enterica strain PNUSAS362746 SAMN36436813-rid18789683.denovo.22, whole genome shotgun sequence	34957..35490																																																						avrA	ABNOQD010000003.1	39594..40460	98.966	870	0						
GCA_032520425.1_PDT001816963.1_genomic.fna	Salmonella_enterica	0.5133	148.452 KB	9	aroC_65,dnaN_451,hemD_29,hisD_312,purE_20,sucA_26,thrA_60	2765	48:g,z51:-	0		1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_65	dnaN	100	100	dnaN_451	hemD	100	100	hemD_29	hisD	100	100	hisD_312	purE	100	100	purE_20	sucA	100	100	sucA_26	thrA	100	100	thrA_60	48	g,z51	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 48:g,z51:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABNOQJ010000038.1 Salmonella enterica strain PNUSAS362724 SAMN36438475-rid18789673.denovo.40, whole genome shotgun sequence	14418..14679																																																																	
GCA_032520465.1_PDT001816962.1_genomic.fna	Salmonella_enterica	0.5214	270.748 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia	0		1	ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOQI010000001.1 Salmonella enterica strain PNUSAS362736 SAMN36438472-rid18789663.denovo.01, whole genome shotgun sequence	145598..146035	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNOQI010000034.1 Salmonella enterica strain PNUSAS362736 SAMN36438472-rid18789663.denovo.38, whole genome shotgun sequence	555..1370	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aac(6')-Iaa	100	438/438	ABNOQI010000055.1 Salmonella enterica strain PNUSAS362736 SAMN36438472-rid18789663.guided.23, whole genome shotgun sequence	32734..33171	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNOQI010000058.1 Salmonella enterica strain PNUSAS362736 SAMN36438472-rid18789663.guided.37, whole genome shotgun sequence	3311..4126	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	ColRNAI	91.07	112 / 130	ABNOQI010000041.1 Salmonella enterica strain PNUSAS362736 SAMN36438472-rid18789663.denovo.45, whole genome shotgun sequence	2004..2115																																																						avrA	ABNOQI010000002.1	434659..435528	99.885	870	0						
GCA_032520505.1_PDT001816958.1_genomic.fna	Salmonella_enterica	0.5213	192.336 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOQK010000001.1 Salmonella enterica strain PNUSAS362748 SAMN36436816-rid18789623.denovo.01, whole genome shotgun sequence	145231..145668	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOQK010000051.1 Salmonella enterica strain PNUSAS362748 SAMN36436816-rid18789623.guided.33, whole genome shotgun sequence	8799..9236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOQK010000032.1 Salmonella enterica strain PNUSAS362748 SAMN36436816-rid18789623.denovo.34, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNOQK010000032.1 Salmonella enterica strain PNUSAS362748 SAMN36436816-rid18789623.denovo.34, whole genome shotgun sequence	9325..9586																																																avrA	ABNOQK010000006.1	95312..96181	99.885	870	0						
GCA_032520565.1_PDT001816957.1_genomic.fna	Salmonella_enterica	0.5216	437.221 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	4	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOQL010000001.1 Salmonella enterica strain PNUSAS362742 SAMN36436826-rid18789613.denovo.01, whole genome shotgun sequence	790194..790631	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNOQL010000014.1 Salmonella enterica strain PNUSAS362742 SAMN36436826-rid18789613.denovo.14, whole genome shotgun sequence	73115..74017	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNOQL010000014.1 Salmonella enterica strain PNUSAS362742 SAMN36436826-rid18789613.denovo.14, whole genome shotgun sequence	72160..72951	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNOQL010000034.1 Salmonella enterica strain PNUSAS362742 SAMN36436826-rid18789613.guided.17, whole genome shotgun sequence	8080..8517	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNOQL010000037.1 Salmonella enterica strain PNUSAS362742 SAMN36436826-rid18789613.guided.26, whole genome shotgun sequence	3982..4884	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNOQL010000037.1 Salmonella enterica strain PNUSAS362742 SAMN36436826-rid18789613.guided.26, whole genome shotgun sequence	3027..3818	Spectinomycin, Streptomycin	JQ414041	tet(A)	100	1200/1200	ABNOQL010000014.1 Salmonella enterica strain PNUSAS362742 SAMN36436826-rid18789613.denovo.14, whole genome shotgun sequence	80500..81699	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNOQL010000038.1 Salmonella enterica strain PNUSAS362742 SAMN36436826-rid18789613.guided.27, whole genome shotgun sequence	989..2188	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNOQL010000026.1 Salmonella enterica strain PNUSAS362742 SAMN36436826-rid18789613.denovo.31, whole genome shotgun sequence	547..675	enterobacteriales	Col440I	93.64	110 / 114	ABNOQL010000025.1 Salmonella enterica strain PNUSAS362742 SAMN36436826-rid18789613.denovo.30, whole genome shotgun sequence	1566..1675		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNOQL010000014.1 Salmonella enterica strain PNUSAS362742 SAMN36436826-rid18789613.denovo.14, whole genome shotgun sequence	87062..87203																																									avrA	ABNOQL010000007.1	39350..40219	98.966	870	0						
GCA_032520585.1_PDT001816955.1_genomic.fna	Salmonella_enterica	0.5226	443.924 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOQM010000001.1 Salmonella enterica strain PNUSAS362700 SAMN36438771-rid18789593.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOQM010000020.1 Salmonella enterica strain PNUSAS362700 SAMN36438771-rid18789593.guided.15, whole genome shotgun sequence	12978..13415	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOQM010000002.1	147034..147903	98.966	870	0						
GCA_032520605.1_PDT001816953.1_genomic.fna	Salmonella_enterica	0.5202	317.854 KB	6	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNOQO010000002.1 Salmonella enterica strain PNUSAS362683 SAMN36433962-rid18789573.denovo.02, whole genome shotgun sequence	453339..453776	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNOQO010000032.1 Salmonella enterica strain PNUSAS362683 SAMN36433962-rid18789573.guided.25, whole genome shotgun sequence	22520..22957	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOQO010000001.1	600572..601441	99.425	870	0						
GCA_032520625.1_PDT001816952.1_genomic.fna	Salmonella_enterica	0.5225	343.515 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOQQ010000001.1 Salmonella enterica strain PNUSAS362733 SAMN36438487-rid18789563.denovo.01, whole genome shotgun sequence	173859..174296	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOQQ010000033.1 Salmonella enterica strain PNUSAS362733 SAMN36438487-rid18789563.guided.24, whole genome shotgun sequence	11172..11609	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOQQ010000003.1	39350..40219	98.966	870	0						
GCA_032520705.1_PDT001816948.1_genomic.fna	Salmonella_enterica	0.5213	297.392 KB	5	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOQS010000001.1 Salmonella enterica strain PNUSAS362807 SAMN36438776-rid18789523.denovo.01, whole genome shotgun sequence	500258..500695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOQS010000032.1 Salmonella enterica strain PNUSAS362807 SAMN36438776-rid18789523.guided.22, whole genome shotgun sequence	10587..11024	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.08	131 / 131	ABNOQS010000023.1 Salmonella enterica strain PNUSAS362807 SAMN36438776-rid18789523.denovo.25, whole genome shotgun sequence	1039..1169	enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNOQS010000028.1 Salmonella enterica strain PNUSAS362807 SAMN36438776-rid18789523.denovo.31, whole genome shotgun sequence	547..675																																																avrA	ABNOQS010000004.1	39348..40217	98.966	870	0						
GCA_032520725.1_PDT001816974.1_genomic.fna	Salmonella_enterica	0.5211	225.649 KB	6	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOPV010000001.1 Salmonella enterica strain PNUSAS362735 SAMN36438484-rid18789783.denovo.01, whole genome shotgun sequence	482319..482756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOPV010000061.1 Salmonella enterica strain PNUSAS362735 SAMN36438484-rid18789783.guided.23, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOPV010000035.1 Salmonella enterica strain PNUSAS362735 SAMN36438484-rid18789783.denovo.38, whole genome shotgun sequence	6822..7464	enterobacteriales	IncFII(S)	100	262 / 262	ABNOPV010000037.1 Salmonella enterica strain PNUSAS362735 SAMN36438484-rid18789783.denovo.40, whole genome shotgun sequence	6443..6704																																																avrA	ABNOPV010000007.1	39698..40567	99.885	870	0						
GCA_032520805.1_PDT001816967.1_genomic.fna	Salmonella_enterica	0.5207	366.413 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOQA010000011.1 Salmonella enterica strain PNUSAS362720 SAMN36438469-rid18789713.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOQA010000040.1 Salmonella enterica strain PNUSAS362720 SAMN36438469-rid18789713.guided.19, whole genome shotgun sequence	32961..33398	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNOQA010000026.1 Salmonella enterica strain PNUSAS362720 SAMN36438469-rid18789713.denovo.28, whole genome shotgun sequence	21255..21788																																																						avrA	ABNOQA010000003.1	39598..40464	98.966	870	0						
GCA_032520825.1_PDT001816966.1_genomic.fna	Salmonella_enterica	0.5164	378.842 KB	5	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNOQB010000004.1 Salmonella enterica strain PNUSAS362680 SAMN36433950-rid18789703.denovo.04, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNOQB010000037.1 Salmonella enterica strain PNUSAS362680 SAMN36433950-rid18789703.guided.26, whole genome shotgun sequence	4349..4786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032520865.1_PDT001816950.1_genomic.fna	Salmonella_enterica	0.5213	412.196 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOQR010000001.1 Salmonella enterica strain PNUSAS362805 SAMN36438773-rid18789543.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOQR010000035.1 Salmonella enterica strain PNUSAS362805 SAMN36438773-rid18789543.guided.25, whole genome shotgun sequence	1025..1462	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOQR010000022.1 Salmonella enterica strain PNUSAS362805 SAMN36438773-rid18789543.denovo.22, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNOQR010000024.1 Salmonella enterica strain PNUSAS362805 SAMN36438773-rid18789543.denovo.26, whole genome shotgun sequence	3387..3648																																																avrA	ABNOQR010000002.1	553077..553946	99.54	870	0						
GCA_032520945.1_PDT001816944.1_genomic.fna	Salmonella_enterica	0.5212	248.285 KB	8	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNOQZ010000008.1 Salmonella enterica strain PNUSAS362743 SAMN36436811-rid18789483.denovo.08, whole genome shotgun sequence	79916..80353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNOQZ010000043.1 Salmonella enterica strain PNUSAS362743 SAMN36436811-rid18789483.guided.28, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	95.65	138 / 142	ABNOQZ010000019.1 Salmonella enterica strain PNUSAS362743 SAMN36436811-rid18789483.denovo.19, whole genome shotgun sequence	70604..70739																																																						avrA	ABNOQZ010000007.1	144854..145723	99.31	870	0						
GCA_032520965.1_PDT001816945.1_genomic.fna	Salmonella_enterica	0.5204	431.012 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNOQV010000001.1 Salmonella enterica strain 23NM06CB03-S1 isolate PNUSAS362781 SAMN36437668-rid18789493.denovo.01, whole genome shotgun sequence	262869..263306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNOQV010000020.1 Salmonella enterica strain 23NM06CB03-S1 isolate PNUSAS362781 SAMN36437668-rid18789493.guided.16, whole genome shotgun sequence	15073..15510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOQV010000003.1	561280..562150	99.656	871	0						
GCA_032521085.1_PDT001816933.1_genomic.fna	Salmonella_enterica	0.5217	437.9 KB	3	aroC_81,dnaN_283,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	909	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_283	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNORE010000001.1 Salmonella enterica strain PNUSAS362788 SAMN36437701-rid18789373.denovo.01, whole genome shotgun sequence	636326..636763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNORE010000022.1 Salmonella enterica strain PNUSAS362788 SAMN36437701-rid18789373.guided.17, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNORE010000002.1	606197..607066	99.31	870	0						
GCA_032521115.1_PDT001816932.1_genomic.fna	Salmonella_enterica	0.5216	376.037 KB	5	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	7	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,qnrB19,qnrB19,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	Col(pHAD28),IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNORG010000001.1 Salmonella enterica strain PNUSAS362739 SAMN36438481-rid18789363.denovo.01, whole genome shotgun sequence	129840..130277	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNORG010000050.1 Salmonella enterica strain PNUSAS362739 SAMN36438481-rid18789363.guided.15, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNORG010000022.1 Salmonella enterica strain PNUSAS362739 SAMN36438481-rid18789363.denovo.25, whole genome shotgun sequence	7777..8682	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNORG010000053.1 Salmonella enterica strain PNUSAS362739 SAMN36438481-rid18789363.guided.33, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNORG010000032.1 Salmonella enterica strain PNUSAS362739 SAMN36438481-rid18789363.denovo.38, whole genome shotgun sequence	346..1559	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNORG010000055.1 Salmonella enterica strain PNUSAS362739 SAMN36438481-rid18789363.guided.37, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNORG010000033.1 Salmonella enterica strain PNUSAS362739 SAMN36438481-rid18789363.denovo.39, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNORG010000056.1 Salmonella enterica strain PNUSAS362739 SAMN36438481-rid18789363.guided.41, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul1	100	840/840	ABNORG010000022.1 Salmonella enterica strain PNUSAS362739 SAMN36438481-rid18789363.denovo.25, whole genome shotgun sequence	1627..2466	Sulfamethoxazole	U12338	sul1	100	840/840	ABNORG010000054.1 Salmonella enterica strain PNUSAS362739 SAMN36438481-rid18789363.guided.36, whole genome shotgun sequence	1648..2487	Sulfamethoxazole	U12338	tet(A)	100	1240/1275	ABNORG010000035.1 Salmonella enterica strain PNUSAS362739 SAMN36438481-rid18789363.denovo.43, whole genome shotgun sequence	913..2152	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNORG010000057.1 Salmonella enterica strain PNUSAS362739 SAMN36438481-rid18789363.guided.42, whole genome shotgun sequence	944..2218	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNORG010000022.1 Salmonella enterica strain PNUSAS362739 SAMN36438481-rid18789363.denovo.25, whole genome shotgun sequence	109..582	Trimethoprim	X00926	dfrA1	100	474/474	ABNORG010000054.1 Salmonella enterica strain PNUSAS362739 SAMN36438481-rid18789363.guided.36, whole genome shotgun sequence	130..603	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNORG010000033.1 Salmonella enterica strain PNUSAS362739 SAMN36438481-rid18789363.denovo.39, whole genome shotgun sequence	1522..1652	enterobacteriales	IncR	100	251 / 251	ABNORG010000023.1 Salmonella enterica strain PNUSAS362739 SAMN36438481-rid18789363.denovo.26, whole genome shotgun sequence	8392..8642																																																avrA	ABNORG010000003.1	139223..140092	99.77	870	0						
GCA_032521145.1_PDT001816930.1_genomic.fna	Salmonella_enterica	0.5211	409.118 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNORH010000001.1 Salmonella enterica strain PNUSAS362685 SAMN36433959-rid18789343.denovo.01, whole genome shotgun sequence	477414..477851	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNORH010000043.1 Salmonella enterica strain PNUSAS362685 SAMN36433959-rid18789343.guided.24, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNORH010000003.1	504316..505186	99.196	871	0						
GCA_032521325.1_PDT001816915.1_genomic.fna	Salmonella_enterica	0.5215	400.671 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNORQ010000002.1 Salmonella enterica strain PNUSAS362803 SAMN36438774-rid18789193.denovo.02, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNORQ010000029.1 Salmonella enterica strain PNUSAS362803 SAMN36438774-rid18789193.guided.20, whole genome shotgun sequence	14403..14840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNORQ010000019.1 Salmonella enterica strain PNUSAS362803 SAMN36438774-rid18789193.denovo.21, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNORQ010000021.1 Salmonella enterica strain PNUSAS362803 SAMN36438774-rid18789193.denovo.24, whole genome shotgun sequence	3402..3663																																																avrA	ABNORQ010000001.1	553077..553946	99.54	870	0						
GCA_032521345.1_PDT001816913.1_genomic.fna	Salmonella_enterica	0.5212	279.935 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_102,sucA_23,thrA_4	2330	9:a:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440II,IncFII(p96A)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_102	sucA	100	100	sucA_23	thrA	100	100	thrA_4	9	a	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Durban		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNORS010000001.1 Salmonella enterica strain PNUSAS362806 SAMN36438777-rid18789173.denovo.01, whole genome shotgun sequence	883922..884359	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNORS010000033.1 Salmonella enterica strain PNUSAS362806 SAMN36438777-rid18789173.guided.25, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440II	97.16	282 / 282	ABNORS010000025.1 Salmonella enterica strain PNUSAS362806 SAMN36438777-rid18789173.denovo.27, whole genome shotgun sequence	5136..5417	enterobacteriales	IncFII(p96A)	99.44	534 / 534	ABNORS010000019.1 Salmonella enterica strain PNUSAS362806 SAMN36438777-rid18789173.denovo.19, whole genome shotgun sequence	15582..16115																																																avrA	ABNORS010000002.1	128143..129013	99.426	871	0						
GCA_032521365.1_PDT001816912.1_genomic.fna	Salmonella_enterica	0.5222	210.286 KB	10	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNORU010000001.1 Salmonella enterica strain PNUSAS362702 SAMN36438770-rid18789163.denovo.01, whole genome shotgun sequence	62306..62743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNORU010000047.1 Salmonella enterica strain PNUSAS362702 SAMN36438770-rid18789163.guided.33, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032521385.1_PDT001816914.1_genomic.fna	Salmonella_enterica	0.5144	155.395 KB	8	aroC_235,dnaN_25,hemD_28,hisD_24,purE_237,sucA_26,thrA_78	869	18:z4,z23:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_235	dnaN	100	100	dnaN_25	hemD	100	100	hemD_28	hisD	100	100	hisD_24	purE	100	100	purE_237	sucA	100	100	sucA_26	thrA	100	100	thrA_78	18	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 18:z4,z23:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032521405.1_PDT001816911.1_genomic.fna	Salmonella_enterica	0.5215	152.745 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNORT010000001.1 Salmonella enterica strain PNUSAS362705 SAMN36438766-rid18789153.denovo.01, whole genome shotgun sequence	217654..218091	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNORT010000063.1 Salmonella enterica strain PNUSAS362705 SAMN36438766-rid18789153.guided.53, whole genome shotgun sequence	1296..1733	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNORT010000020.1 Salmonella enterica strain PNUSAS362705 SAMN36438766-rid18789153.denovo.20, whole genome shotgun sequence	38643..39458	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNORT010000062.1 Salmonella enterica strain PNUSAS362705 SAMN36438766-rid18789153.guided.52, whole genome shotgun sequence	614..1429	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNORT010000020.1 Salmonella enterica strain PNUSAS362705 SAMN36438766-rid18789153.denovo.20, whole genome shotgun sequence	41635..42834	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNORT010000062.1 Salmonella enterica strain PNUSAS362705 SAMN36438766-rid18789153.guided.52, whole genome shotgun sequence	3606..4805	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNORT010000050.1 Salmonella enterica strain PNUSAS362705 SAMN36438766-rid18789153.denovo.54, whole genome shotgun sequence	371..501	enterobacteriales	IncC	100	417 / 417	ABNORT010000020.1 Salmonella enterica strain PNUSAS362705 SAMN36438766-rid18789153.denovo.20, whole genome shotgun sequence	84424..84840																																																avrA	ABNORT010000002.1	95114..95983	99.885	870	0						
GCA_032521425.1_PDT001816910.1_genomic.fna	Salmonella_enterica	0.5214	521.219 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNORY010000001.1 Salmonella enterica strain PNUSAS362704 SAMN36438767-rid18789143.denovo.01, whole genome shotgun sequence	683917..684354	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNORY010000027.1 Salmonella enterica strain PNUSAS362704 SAMN36438767-rid18789143.guided.14, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNORY010000013.1 Salmonella enterica strain PNUSAS362704 SAMN36438767-rid18789143.denovo.13, whole genome shotgun sequence	2072..2605																																																						avrA	ABNORY010000002.1	563309..564178	99.77	870	0						
GCA_032521465.1_PDT001816909.1_genomic.fna	Salmonella_enterica	0.5217	429.91 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNORX010000001.1 Salmonella enterica strain PNUSAS362701 SAMN36438769-rid18789133.denovo.01, whole genome shotgun sequence	477436..477873	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNORX010000025.1 Salmonella enterica strain PNUSAS362701 SAMN36438769-rid18789133.guided.21, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNORX010000010.1	150695..151565	99.196	871	0						
GCA_032521485.1_PDT001816908.1_genomic.fna	Salmonella_enterica	0.5162	370.486 KB	6	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNORZ010000002.1 Salmonella enterica strain PNUSAS362699 SAMN36438772-rid18789123.denovo.02, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNORZ010000037.1 Salmonella enterica strain PNUSAS362699 SAMN36438772-rid18789123.guided.27, whole genome shotgun sequence	4349..4786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032521845.1_PDT001816879.1_genomic.fna	Salmonella_enterica	0.5219	381.934 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOSQ010000008.1 Salmonella enterica strain PNUSAS362722 SAMN36438483-rid18788833.denovo.08, whole genome shotgun sequence	130428..130865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOSQ010000027.1 Salmonella enterica strain PNUSAS362722 SAMN36438483-rid18788833.guided.23, whole genome shotgun sequence	3710..4147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOSQ010000013.1	94911..95780	99.195	870	0						
GCA_032521865.1_PDT001816878.1_genomic.fna	Salmonella_enterica	0.5218	257.842 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOSR010000001.1 Salmonella enterica strain PNUSAS362731 SAMN36438480-rid18788823.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOSR010000060.1 Salmonella enterica strain PNUSAS362731 SAMN36438480-rid18788823.guided.22, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	262 / 262	ABNOSR010000032.1 Salmonella enterica strain PNUSAS362731 SAMN36438480-rid18788823.denovo.33, whole genome shotgun sequence	29372..29633																																																						avrA	ABNOSR010000003.1	155205..156073	100	869	0						
GCA_032521885.1_PDT001816877.1_genomic.fna	Salmonella_enterica	0.5214	406.086 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOSS010000001.1 Salmonella enterica strain PNUSAS362727 SAMN36438486-rid18788813.denovo.01, whole genome shotgun sequence	293262..293699	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOSS010000029.1 Salmonella enterica strain PNUSAS362727 SAMN36438486-rid18788813.guided.18, whole genome shotgun sequence	10673..11110	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOSS010000020.1 Salmonella enterica strain PNUSAS362727 SAMN36438486-rid18788813.denovo.22, whole genome shotgun sequence	6290..6932	enterobacteriales	IncFII(S)	100	262 / 262	ABNOSS010000021.1 Salmonella enterica strain PNUSAS362727 SAMN36438486-rid18788813.denovo.24, whole genome shotgun sequence	3260..3521																																																avrA	ABNOSS010000002.1	553356..554225	99.54	870	0						
GCA_032521905.1_PDT001816876.1_genomic.fna	Salmonella_enterica	0.5217	411.781 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pHCM2)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNOSU010000001.1 Salmonella enterica strain PNUSAS362728 SAMN36438468-rid18788803.denovo.01, whole genome shotgun sequence	482160..482597	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNOSU010000034.1 Salmonella enterica strain PNUSAS362728 SAMN36438468-rid18788803.guided.26, whole genome shotgun sequence	4184..4621	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	98.51	875 / 875	ABNOSU010000016.1 Salmonella enterica strain PNUSAS362728 SAMN36438468-rid18788803.denovo.17, whole genome shotgun sequence	29654..30528																																																						avrA	ABNOSU010000002.1	562803..563672	99.77	870	0						
GCA_032521925.1_PDT001816875.1_genomic.fna	Salmonella_enterica	0.5216	272.246 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOSX010000003.1 Salmonella enterica strain PNUSAS362738 SAMN36438479-rid18788793.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOSX010000066.1 Salmonella enterica strain PNUSAS362738 SAMN36438479-rid18788793.guided.36, whole genome shotgun sequence	10647..11084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOSX010000041.1 Salmonella enterica strain PNUSAS362738 SAMN36438479-rid18788793.denovo.44, whole genome shotgun sequence	1890..2532	enterobacteriales	IncFII(S)	100	262 / 262	ABNOSX010000042.1 Salmonella enterica strain PNUSAS362738 SAMN36438479-rid18788793.denovo.45, whole genome shotgun sequence	526..787																																																avrA	ABNOSX010000007.1	98459..99327	100	869	0						
GCA_032521945.1_PDT001816874.1_genomic.fna	Salmonella_enterica	0.5198	154.846 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNOST010000009.1 Salmonella enterica strain PNUSAS362730 SAMN36438477-rid18788783.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNOST010000057.1 Salmonella enterica strain PNUSAS362730 SAMN36438477-rid18788783.guided.37, whole genome shotgun sequence	6018..6452	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032521965.1_PDT001816873.1_genomic.fna	Salmonella_enterica	0.5182	227.827 KB	9	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	13	aac(6')-Iaa,aadA13,aph(3')-Ia,aadA5,aac(6')-Iaa,aadA13,aadA1,aph(3')-Ia,aadA5,blaTEM-1B,blaTEM-1B,mph(A),lnu(G),mph(A),lnu(G),floR,floR,sul1,sul1,tet(B),tet(B),dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA17	0		4	IncHI2,IncHI2A,IncQ1,IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOSW010000001.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.01, whole genome shotgun sequence	146354..146791	Amikacin, Tobramycin	NC_003197	aadA13	96.37	798/798	ABNOSW010000039.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.40, whole genome shotgun sequence	24456..25250	Spectinomycin, Streptomycin	NC010643	aph(3')-Ia	100	816/816	ABNOSW010000066.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.75, whole genome shotgun sequence	429..1244	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	X62115	aadA5	100	789/789	ABNOSW010000073.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.86, whole genome shotgun sequence	172..960	Spectinomycin, Streptomycin	AF137361	aac(6')-Iaa	100	438/438	ABNOSW010000084.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.guided.49, whole genome shotgun sequence	15506..15943	Amikacin, Tobramycin	NC_003197	aadA13	96.37	798/798	ABNOSW010000088.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.guided.60, whole genome shotgun sequence	11..805	Spectinomycin, Streptomycin	NC010643	aadA1	100	792/792	ABNOSW010000092.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.guided.80, whole genome shotgun sequence	624..1415	Spectinomycin, Streptomycin	JX185132	aph(3')-Ia	100	816/816	ABNOSW010000094.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.guided.83, whole genome shotgun sequence	105..920	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	X62115	aadA5	100	789/789	ABNOSW010000095.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.guided.85, whole genome shotgun sequence	269..1057	Spectinomycin, Streptomycin	AF137361	blaTEM-1B	100	861/861	ABNOSW010000042.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.43, whole genome shotgun sequence	66..926	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNOSW010000086.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.guided.51, whole genome shotgun sequence	107..967	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNOSW010000064.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.71, whole genome shotgun sequence	2256..3161	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(G)	100	804/804	ABNOSW010000065.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.72, whole genome shotgun sequence	417..1220	Lincomycin	KX470419	mph(A)	100	906/906	ABNOSW010000089.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.guided.70, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(G)	100	804/804	ABNOSW010000090.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.guided.73, whole genome shotgun sequence	294..1097	Lincomycin	KX470419	floR	98.11	1214/1215	ABNOSW010000052.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.57, whole genome shotgun sequence	2859..4072	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNOSW010000087.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.guided.56, whole genome shotgun sequence	4014..5227	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNOSW010000072.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.84, whole genome shotgun sequence	90..929	Sulfamethoxazole	U12338	sul1	100	840/840	ABNOSW010000093.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.guided.82, whole genome shotgun sequence	375..1214	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABNOSW010000041.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.42, whole genome shotgun sequence	4077..5282	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNOSW010000091.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.guided.74, whole genome shotgun sequence	1218..2423	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA1	99.79	474/474	ABNOSW010000039.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.40, whole genome shotgun sequence	32239..32712	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNOSW010000039.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.40, whole genome shotgun sequence	32239..32712	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNOSW010000039.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.40, whole genome shotgun sequence	32239..32712	Trimethoprim	X00926	dfrA1	99.79	474/474	ABNOSW010000092.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.guided.80, whole genome shotgun sequence	58..531	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNOSW010000092.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.guided.80, whole genome shotgun sequence	58..531	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNOSW010000092.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.guided.80, whole genome shotgun sequence	58..531	Trimethoprim	X00926	dfrA17	100	384/474	ABNOSW010000096.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.guided.95, whole genome shotgun sequence	58..441	Trimethoprim	FJ460238																																																																																																																																																																																																																																																																																								enterobacteriales	IncHI2	100	327 / 327	ABNOSW010000024.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.24, whole genome shotgun sequence	8904..9230	enterobacteriales	IncHI2A	99.52	630 / 630	ABNOSW010000024.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.24, whole genome shotgun sequence	24098..24727		enterobacteriales	IncQ1	100	796 / 796	ABNOSW010000052.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.57, whole genome shotgun sequence	292..1087		enterobacteriales	IncX4	100	374 / 374	ABNOSW010000048.1 Salmonella enterica strain PNUSAS362719 SAMN36438471-rid18788773.denovo.52, whole genome shotgun sequence	9287..9660																																		avrA	ABNOSW010000006.1	72658..73527	99.885	870	0						
GCA_032521985.1_PDT001816872.1_genomic.fna	Salmonella_enterica	0.5209	291.698 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOSV010000013.1 Salmonella enterica strain PNUSAS362734 SAMN36438476-rid18788763.denovo.13, whole genome shotgun sequence	86149..86586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOSV010000039.1 Salmonella enterica strain PNUSAS362734 SAMN36438476-rid18788763.guided.28, whole genome shotgun sequence	4312..4749	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNOSV010000021.1 Salmonella enterica strain PNUSAS362734 SAMN36438476-rid18788763.denovo.21, whole genome shotgun sequence	11938..12471																																																						avrA	ABNOSV010000012.1	39407..40273	98.966	870	0						
GCA_032522005.1_PDT001816871.1_genomic.fna	Salmonella_enterica	0.5215	275.876 KB	6	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	7	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,qnrB19,qnrB19,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	Col(pHAD28),IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNOSY010000001.1 Salmonella enterica strain PNUSAS362721 SAMN36438474-rid18788753.denovo.01, whole genome shotgun sequence	521294..521731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNOSY010000066.1 Salmonella enterica strain PNUSAS362721 SAMN36438474-rid18788753.guided.14, whole genome shotgun sequence	20621..21058	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNOSY010000033.1 Salmonella enterica strain PNUSAS362721 SAMN36438474-rid18788753.denovo.36, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNOSY010000069.1 Salmonella enterica strain PNUSAS362721 SAMN36438474-rid18788753.guided.39, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNOSY010000033.1 Salmonella enterica strain PNUSAS362721 SAMN36438474-rid18788753.denovo.36, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNOSY010000070.1 Salmonella enterica strain PNUSAS362721 SAMN36438474-rid18788753.guided.50, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNOSY010000048.1 Salmonella enterica strain PNUSAS362721 SAMN36438474-rid18788753.denovo.53, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNOSY010000071.1 Salmonella enterica strain PNUSAS362721 SAMN36438474-rid18788753.guided.54, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul1	100	840/840	ABNOSY010000033.1 Salmonella enterica strain PNUSAS362721 SAMN36438474-rid18788753.denovo.36, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNOSY010000069.1 Salmonella enterica strain PNUSAS362721 SAMN36438474-rid18788753.guided.39, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNOSY010000033.1 Salmonella enterica strain PNUSAS362721 SAMN36438474-rid18788753.denovo.36, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNOSY010000069.1 Salmonella enterica strain PNUSAS362721 SAMN36438474-rid18788753.guided.39, whole genome shotgun sequence	9840..11114	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNOSY010000033.1 Salmonella enterica strain PNUSAS362721 SAMN36438474-rid18788753.denovo.36, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNOSY010000069.1 Salmonella enterica strain PNUSAS362721 SAMN36438474-rid18788753.guided.39, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNOSY010000048.1 Salmonella enterica strain PNUSAS362721 SAMN36438474-rid18788753.denovo.53, whole genome shotgun sequence	1522..1652	enterobacteriales	IncR	100	251 / 251	ABNOSY010000041.1 Salmonella enterica strain PNUSAS362721 SAMN36438474-rid18788753.denovo.45, whole genome shotgun sequence	528..778																																																avrA	ABNOSY010000003.1	39350..40219	99.77	870	0						
GCA_032522025.1_PDT001816869.1_genomic.fna	Salmonella_enterica	0.5218	223.105 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOTA010000001.1 Salmonella enterica strain PNUSAS362732 SAMN36438485-rid18788733.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOTA010000056.1 Salmonella enterica strain PNUSAS362732 SAMN36438485-rid18788733.guided.29, whole genome shotgun sequence	14031..14468	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOTA010000037.1 Salmonella enterica strain PNUSAS362732 SAMN36438485-rid18788733.denovo.39, whole genome shotgun sequence	6829..7471	enterobacteriales	IncFII(S)	100	262 / 262	ABNOTA010000032.1 Salmonella enterica strain PNUSAS362732 SAMN36438485-rid18788733.denovo.33, whole genome shotgun sequence	29387..29648																																																avrA	ABNOTA010000002.1	209077..209945	100	869	0						
GCA_032522045.1_PDT001816870.1_genomic.fna	Salmonella_enterica	0.5205	411.973 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOSZ010000001.1 Salmonella enterica strain PNUSAS362737 SAMN36438470-rid18788743.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOSZ010000047.1 Salmonella enterica strain PNUSAS362737 SAMN36438470-rid18788743.guided.17, whole genome shotgun sequence	29680..30117	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	262 / 262	ABNOSZ010000020.1 Salmonella enterica strain PNUSAS362737 SAMN36438470-rid18788743.denovo.23, whole genome shotgun sequence	1778..2039	enterobacteriales	IncX1	98.93	374 / 374	ABNOSZ010000016.1 Salmonella enterica strain PNUSAS362737 SAMN36438470-rid18788743.denovo.18, whole genome shotgun sequence	32011..32384																																																avrA	ABNOSZ010000008.1	174754..175623	99.54	870	0						
GCA_032522065.1_PDT001816868.1_genomic.fna	Salmonella_enterica	0.5214	238.812 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOTB010000002.1 Salmonella enterica strain PNUSAS362726 SAMN36438482-rid18788723.denovo.02, whole genome shotgun sequence	62180..62617	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOTB010000040.1 Salmonella enterica strain PNUSAS362726 SAMN36438482-rid18788723.denovo.44, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOTB010000040.1 Salmonella enterica strain PNUSAS362726 SAMN36438482-rid18788723.denovo.44, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNOTB010000055.1 Salmonella enterica strain PNUSAS362726 SAMN36438482-rid18788723.guided.25, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOTB010000058.1 Salmonella enterica strain PNUSAS362726 SAMN36438482-rid18788723.guided.48, whole genome shotgun sequence	1713..2549	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOTB010000058.1 Salmonella enterica strain PNUSAS362726 SAMN36438482-rid18788723.guided.48, whole genome shotgun sequence	910..1713	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNOTB010000044.1 Salmonella enterica strain PNUSAS362726 SAMN36438482-rid18788723.denovo.50, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNOTB010000059.1 Salmonella enterica strain PNUSAS362726 SAMN36438482-rid18788723.guided.49, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNOTB010000040.1 Salmonella enterica strain PNUSAS362726 SAMN36438482-rid18788723.denovo.44, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNOTB010000058.1 Salmonella enterica strain PNUSAS362726 SAMN36438482-rid18788723.guided.48, whole genome shotgun sequence	34..849	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNOTB010000033.1 Salmonella enterica strain PNUSAS362726 SAMN36438482-rid18788723.denovo.37, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNOTB010000057.1 Salmonella enterica strain PNUSAS362726 SAMN36438482-rid18788723.guided.36, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNOTB010000001.1	508771..509640	99.885	870	0						
GCA_032522085.1_PDT001816860.1_genomic.fna	Salmonella_enterica	0.5205	412.985 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOTI010000001.1 Salmonella enterica strain PNUSAS362786 SAMN36437699-rid18788643.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOTI010000024.1 Salmonella enterica strain PNUSAS362786 SAMN36437699-rid18788643.guided.19, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOTI010000017.1 Salmonella enterica strain PNUSAS362786 SAMN36437699-rid18788643.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNOTI010000018.1 Salmonella enterica strain PNUSAS362786 SAMN36437699-rid18788643.denovo.21, whole genome shotgun sequence	3400..3661		enterobacteriales	IncX1	98.93	374 / 374	ABNOTI010000013.1 Salmonella enterica strain PNUSAS362786 SAMN36437699-rid18788643.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNOTI010000002.1	553690..554559	99.54	870	0						
GCA_032522105.1_PDT001816855.1_genomic.fna	Salmonella_enterica	0.5209	298.811 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOTN010000001.1 Salmonella enterica strain PNUSAS362745 SAMN36436814-rid18788593.denovo.01, whole genome shotgun sequence	477443..477880	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOTN010000033.1 Salmonella enterica strain PNUSAS362745 SAMN36436814-rid18788593.guided.21, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOTN010000013.1	95047..95916	99.195	870	0						
GCA_032522125.1_PDT001816850.1_genomic.fna	Salmonella_enterica	0.5218	523.055 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNOTT010000001.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.denovo.01, whole genome shotgun sequence	352807..353244	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNOTT010000024.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.denovo.29, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNOTT010000036.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.guided.15, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNOTT010000038.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.guided.28, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNOTT010000024.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.denovo.29, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNOTT010000038.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.guided.28, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNOTT010000022.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.denovo.25, whole genome shotgun sequence	6582..7487	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNOTT010000037.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.guided.26, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNOTT010000021.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.denovo.24, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNOTT010000039.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.guided.32, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNOTT010000024.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.denovo.29, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNOTT010000038.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.guided.28, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNOTT010000022.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.denovo.25, whole genome shotgun sequence	432..1271	Sulfamethoxazole	U12338	sul1	100	840/840	ABNOTT010000041.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.guided.36, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNOTT010000021.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.denovo.24, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNOTT010000040.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.guided.33, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNOTT010000021.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.denovo.24, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNOTT010000040.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.guided.33, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNOTT010000018.1 Salmonella enterica strain PNUSAS362749 SAMN36436817-rid18788543.denovo.21, whole genome shotgun sequence	8402..8652																																																						avrA	ABNOTT010000002.1	553474..554343	99.77	870	0						
GCA_032522165.1_PDT001816832.1_genomic.fna	Salmonella_enterica	0.5184	366.093 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	2	IncI1-I(Alpha),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOTU010000001.1 Salmonella enterica strain 23NM06GT04-S1 isolate PNUSAS362782 SAMN36437487-rid18788363.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOTU010000038.1 Salmonella enterica strain 23NM06GT04-S1 isolate PNUSAS362782 SAMN36437487-rid18788363.guided.20, whole genome shotgun sequence	44275..44712	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNOTU010000004.1 Salmonella enterica strain 23NM06GT04-S1 isolate PNUSAS362782 SAMN36437487-rid18788363.denovo.04, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNOTU010000040.1 Salmonella enterica strain 23NM06GT04-S1 isolate PNUSAS362782 SAMN36437487-rid18788363.guided.31, whole genome shotgun sequence	6683..7105	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	ABNOTU010000015.1 Salmonella enterica strain 23NM06GT04-S1 isolate PNUSAS362782 SAMN36437487-rid18788363.denovo.15, whole genome shotgun sequence	68321..69526	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNOTU010000039.1 Salmonella enterica strain 23NM06GT04-S1 isolate PNUSAS362782 SAMN36437487-rid18788363.guided.25, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNOTU010000015.1 Salmonella enterica strain 23NM06GT04-S1 isolate PNUSAS362782 SAMN36437487-rid18788363.denovo.15, whole genome shotgun sequence	75912..76053	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNOTU010000039.1 Salmonella enterica strain 23NM06GT04-S1 isolate PNUSAS362782 SAMN36437487-rid18788363.guided.25, whole genome shotgun sequence	3169..3310		enterobacteriales	IncX1	98.93	374 / 374	ABNOTU010000021.1 Salmonella enterica strain 23NM06GT04-S1 isolate PNUSAS362782 SAMN36437487-rid18788363.denovo.23, whole genome shotgun sequence	7449..7822																																									avrA	ABNOTU010000002.1	173924..174793	99.195	870	0						
GCA_032522185.1_PDT001816830.1_genomic.fna	Salmonella_enterica	0.5208	406.146 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOTX010000001.1 Salmonella enterica strain PNUSAS362747 SAMN36436812-rid18788343.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOTX010000031.1 Salmonella enterica strain PNUSAS362747 SAMN36436812-rid18788343.guided.17, whole genome shotgun sequence	4065..4502	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOTX010000020.1 Salmonella enterica strain PNUSAS362747 SAMN36436812-rid18788343.denovo.22, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNOTX010000021.1 Salmonella enterica strain PNUSAS362747 SAMN36436812-rid18788343.denovo.24, whole genome shotgun sequence	3443..3704																																																avrA	ABNOTX010000002.1	552782..553651	99.54	870	0						
GCA_032522265.1_PDT001816867.1_genomic.fna	Salmonella_enterica	0.5206	244.061 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul2	0		2	Col(MG828),Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOTC010000001.1 Salmonella enterica strain PNUSAS362729 SAMN36438473-rid18788713.denovo.01, whole genome shotgun sequence	145379..145816	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOTC010000039.1 Salmonella enterica strain PNUSAS362729 SAMN36438473-rid18788713.denovo.43, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOTC010000039.1 Salmonella enterica strain PNUSAS362729 SAMN36438473-rid18788713.denovo.43, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNOTC010000061.1 Salmonella enterica strain PNUSAS362729 SAMN36438473-rid18788713.guided.31, whole genome shotgun sequence	3419..3856	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOTC010000064.1 Salmonella enterica strain PNUSAS362729 SAMN36438473-rid18788713.guided.42, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOTC010000064.1 Salmonella enterica strain PNUSAS362729 SAMN36438473-rid18788713.guided.42, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNOTC010000048.1 Salmonella enterica strain PNUSAS362729 SAMN36438473-rid18788713.denovo.53, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNOTC010000065.1 Salmonella enterica strain PNUSAS362729 SAMN36438473-rid18788713.guided.52, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNOTC010000045.1 Salmonella enterica strain PNUSAS362729 SAMN36438473-rid18788713.denovo.49, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNOTC010000066.1 Salmonella enterica strain PNUSAS362729 SAMN36438473-rid18788713.guided.56, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABNOTC010000039.1 Salmonella enterica strain PNUSAS362729 SAMN36438473-rid18788713.denovo.43, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNOTC010000064.1 Salmonella enterica strain PNUSAS362729 SAMN36438473-rid18788713.guided.42, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col(MG828)	91.6	262 / 262	ABNOTC010000041.1 Salmonella enterica strain PNUSAS362729 SAMN36438473-rid18788713.denovo.45, whole genome shotgun sequence	2845..3106	enterobacteriales	Col(pHAD28)	92.5	120 / 131	ABNOTC010000041.1 Salmonella enterica strain PNUSAS362729 SAMN36438473-rid18788713.denovo.45, whole genome shotgun sequence	716..835		enterobacteriales	Col(pHAD28)	100	131 / 131	ABNOTC010000045.1 Salmonella enterica strain PNUSAS362729 SAMN36438473-rid18788713.denovo.49, whole genome shotgun sequence	1150..1280																																									avrA	ABNOTC010000002.1	540624..541493	99.885	870	0						
GCA_032522285.1_PDT001816866.1_genomic.fna	Salmonella_enterica	0.5202	430.983 KB	4	aroC_13,dnaN_181,hemD_49,hisD_13,purE_183,sucA_71,thrA_4	617	28:i:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440II	aroC	100	100	aroC_13	dnaN	100	100	dnaN_181	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_183	sucA	100	100	sucA_71	thrA	100	100	thrA_4	28	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	Cotham		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNOTE010000001.1 Salmonella enterica strain PNUSAS362725 SAMN36438488-rid18788703.denovo.01, whole genome shotgun sequence	208536..208973	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNOTE010000051.1 Salmonella enterica strain PNUSAS362725 SAMN36438488-rid18788703.guided.14, whole genome shotgun sequence	42399..42836	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440II	97.16	282 / 282	ABNOTE010000021.1 Salmonella enterica strain PNUSAS362725 SAMN36438488-rid18788703.denovo.24, whole genome shotgun sequence	5136..5417																																																						avrA	ABNOTE010000002.1	552830..553699	99.425	870	0						
GCA_032522385.1_PDT001816858.1_genomic.fna	Salmonella_enterica	0.5211	207.444 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOTK010000001.1 Salmonella enterica strain PNUSAS362784 SAMN36437705-rid18788623.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOTK010000047.1 Salmonella enterica strain PNUSAS362784 SAMN36437705-rid18788623.guided.26, whole genome shotgun sequence	41948..42385	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNOTK010000003.1	175008..175876	99.77	870	0						
GCA_032522405.1_PDT001816859.1_genomic.fna	Salmonella_enterica	0.5213	225.551 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOTJ010000001.1 Salmonella enterica strain PNUSAS362789 SAMN36437702-rid18788633.denovo.01, whole genome shotgun sequence	207388..207825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOTJ010000049.1 Salmonella enterica strain PNUSAS362789 SAMN36437702-rid18788633.guided.21, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOTJ010000024.1 Salmonella enterica strain PNUSAS362789 SAMN36437702-rid18788633.denovo.25, whole genome shotgun sequence	44712..45354	enterobacteriales	IncFII(S)	100	262 / 262	ABNOTJ010000024.1 Salmonella enterica strain PNUSAS362789 SAMN36437702-rid18788633.denovo.25, whole genome shotgun sequence	29366..29627																																																avrA	ABNOTJ010000003.1	400765..401634	99.885	870	0						
GCA_032522455.1_PDT001816857.1_genomic.fna	Salmonella_enterica	0.5213	342.553 KB	5	aroC_140,dnaN_105,hemD_8,hisD_93,purE_2,sucA_10,thrA_58	1993	35:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_8	hisD	100	100	hisD_93	purE	100	100	purE_2	sucA	100	100	sucA_10	thrA	100	100	thrA_58	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOTM010000001.1 Salmonella enterica strain PNUSAS362787 SAMN36437700-rid18788613.denovo.01, whole genome shotgun sequence	453900..454337	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOTM010000058.1 Salmonella enterica strain PNUSAS362787 SAMN36437700-rid18788613.guided.24, whole genome shotgun sequence	20474..20911	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNOTM010000014.1 Salmonella enterica strain PNUSAS362787 SAMN36437700-rid18788613.denovo.14, whole genome shotgun sequence	91974..93173	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNOTM010000061.1 Salmonella enterica strain PNUSAS362787 SAMN36437700-rid18788613.guided.50, whole genome shotgun sequence	1885..3084	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032522505.1_PDT001816852.1_genomic.fna	Salmonella_enterica	0.5217	335.871 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	4	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOTQ010000001.1 Salmonella enterica strain PNUSAS362741 SAMN36436824-rid18788563.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNOTQ010000015.1 Salmonella enterica strain PNUSAS362741 SAMN36436824-rid18788563.denovo.15, whole genome shotgun sequence	72758..73660	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNOTQ010000015.1 Salmonella enterica strain PNUSAS362741 SAMN36436824-rid18788563.denovo.15, whole genome shotgun sequence	71803..72594	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNOTQ010000035.1 Salmonella enterica strain PNUSAS362741 SAMN36436824-rid18788563.guided.16, whole genome shotgun sequence	31724..32161	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNOTQ010000038.1 Salmonella enterica strain PNUSAS362741 SAMN36436824-rid18788563.guided.25, whole genome shotgun sequence	3982..4884	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNOTQ010000038.1 Salmonella enterica strain PNUSAS362741 SAMN36436824-rid18788563.guided.25, whole genome shotgun sequence	3027..3818	Spectinomycin, Streptomycin	JQ414041	tet(A)	100	1200/1200	ABNOTQ010000020.1 Salmonella enterica strain PNUSAS362741 SAMN36436824-rid18788563.denovo.22, whole genome shotgun sequence	869..2068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNOTQ010000039.1 Salmonella enterica strain PNUSAS362741 SAMN36436824-rid18788563.guided.29, whole genome shotgun sequence	890..2089	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNOTQ010000028.1 Salmonella enterica strain PNUSAS362741 SAMN36436824-rid18788563.denovo.33, whole genome shotgun sequence	547..675	enterobacteriales	Col440I	93.64	110 / 114	ABNOTQ010000027.1 Salmonella enterica strain PNUSAS362741 SAMN36436824-rid18788563.denovo.32, whole genome shotgun sequence	1566..1675		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNOTQ010000020.1 Salmonella enterica strain PNUSAS362741 SAMN36436824-rid18788563.denovo.22, whole genome shotgun sequence	7431..7572																																									avrA	ABNOTQ010000006.1	146984..147853	98.966	870	0						
GCA_032522525.1_PDT001816851.1_genomic.fna	Salmonella_enterica	0.5203	406.919 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOTR010000001.1 Salmonella enterica strain PNUSAS362783 SAMN36437703-rid18788553.denovo.01, whole genome shotgun sequence	774378..774815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOTR010000026.1 Salmonella enterica strain PNUSAS362783 SAMN36437703-rid18788553.guided.20, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOTR010000018.1 Salmonella enterica strain PNUSAS362783 SAMN36437703-rid18788553.denovo.19, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNOTR010000019.1 Salmonella enterica strain PNUSAS362783 SAMN36437703-rid18788553.denovo.22, whole genome shotgun sequence	3400..3661		enterobacteriales	IncX1	98.93	374 / 374	ABNOTR010000014.1 Salmonella enterica strain PNUSAS362783 SAMN36437703-rid18788553.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNOTR010000002.1	553696..554565	99.54	870	0						
GCA_032522545.1_PDT001816831.1_genomic.fna	Salmonella_enterica	0.5211	392.572 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOTW010000010.1 Salmonella enterica strain PNUSAS362740 SAMN36436825-rid18788353.denovo.10, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOTW010000037.1 Salmonella enterica strain PNUSAS362740 SAMN36436825-rid18788353.guided.29, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNOTW010000018.1 Salmonella enterica strain PNUSAS362740 SAMN36436825-rid18788353.denovo.18, whole genome shotgun sequence	34957..35490																																																						avrA	ABNOTW010000003.1	39478..40344	98.966	870	0						
GCA_032522585.1_PDT001816829.1_genomic.fna	Salmonella_enterica	0.522	411.201 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNOTY010000001.1 Salmonella enterica strain PNUSAS362744 SAMN36436815-rid18788333.denovo.01, whole genome shotgun sequence	804196..804633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNOTY010000023.1 Salmonella enterica strain PNUSAS362744 SAMN36436815-rid18788333.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOTY010000002.1	39468..40337	99.425	870	0						
GCA_032523185.1_PDT001816791.1_genomic.fna	Salmonella_enterica	0.522	660.811 KB	3	aroC_139,dnaN_35,hemD_8,hisD_132,purE_118*,sucA_9,thrA_168	Unknown	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_139	dnaN	100	100	dnaN_35	hemD	100	100	hemD_8	hisD	100	100	hisD_132	purE	99.749373433584	100	purE_118*	sucA	100	100	sucA_9	thrA	100	100	thrA_168	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOUU010000001.1 Salmonella enterica strain FDA_FNW2590 SAMN36435012-rid18787953.denovo.01, whole genome shotgun sequence	497979..498416	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOUU010000024.1 Salmonella enterica strain FDA_FNW2590 SAMN36435012-rid18787953.guided.14, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOUU010000003.1	140017..140886	99.195	870	0						
GCA_032523205.1_PDT001816790.1_genomic.fna	Salmonella_enterica	0.5221	660.811 KB	3	aroC_139,dnaN_35,hemD_8,hisD_132,purE_118*,sucA_9,thrA_168	Unknown	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_139	dnaN	100	100	dnaN_35	hemD	100	100	hemD_8	hisD	100	100	hisD_132	purE	99.749373433584	100	purE_118*	sucA	100	100	sucA_9	thrA	100	100	thrA_168	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOUX010000001.1 Salmonella enterica strain FDA_FNW2589 SAMN36435014-rid18787943.denovo.01, whole genome shotgun sequence	497979..498416	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOUX010000025.1 Salmonella enterica strain FDA_FNW2589 SAMN36435014-rid18787943.guided.15, whole genome shotgun sequence	9650..10087	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOUX010000003.1	140017..140886	99.195	870	0						
GCA_032523305.1_PDT001816785.1_genomic.fna	Salmonella_enterica	0.5158	255.44 KB	7	aroC_128,dnaN_119,hemD_100,hisD_27,purE_22,sucA_129,thrA_30	958	43:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_128	dnaN	100	100	dnaN_119	hemD	100	100	hemD_100	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_129	thrA	100	100	thrA_30	43	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 43:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABNOUZ010000001.1 Salmonella enterica strain FDA_FNW2586 SAMN36435013-rid18787893.denovo.01, whole genome shotgun sequence	368422..368859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABNOUZ010000066.1 Salmonella enterica strain FDA_FNW2586 SAMN36435013-rid18787893.guided.22, whole genome shotgun sequence	23569..24006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032523365.1_PDT001816782.1_genomic.fna	Salmonella_enterica	0.5144	421.761 KB	5	aroC_145,dnaN_26,hemD_30,hisD_26,purE_21,sucA_87,thrA_711*	3616*	50:l,v:z35	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_145	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	99.8003992015968	100	thrA_711*	50	l,v	z35	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 50:l,v:z35		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNOVB010000003.1 Salmonella enterica strain FDA_FNW2587 SAMN36435015-rid18787863.denovo.03, whole genome shotgun sequence	93994..94431	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNOVB010000046.1 Salmonella enterica strain FDA_FNW2587 SAMN36435015-rid18787863.guided.18, whole genome shotgun sequence	20547..20984	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOVB010000001.1	144501..145369	96.552	870	0						
GCA_032523385.1_PDT001816780.1_genomic.fna	Salmonella_enterica	0.5162	374.846 KB	5	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNOVC010000003.1 Salmonella enterica strain PNUSAS362676 SAMN36433958-rid18787843.denovo.03, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNOVC010000037.1 Salmonella enterica strain PNUSAS362676 SAMN36433958-rid18787843.guided.28, whole genome shotgun sequence	4349..4786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032523405.1_PDT001816781.1_genomic.fna	Salmonella_enterica	0.5212	430.184 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOVD010000001.1 Salmonella enterica strain PNUSAS362678 SAMN36433963-rid18787853.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOVD010000021.1 Salmonella enterica strain PNUSAS362678 SAMN36433963-rid18787853.guided.17, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	95.65	138 / 142	ABNOVD010000013.1 Salmonella enterica strain PNUSAS362678 SAMN36433963-rid18787853.denovo.13, whole genome shotgun sequence	13174..13309																																																																	
GCA_032523425.1_PDT001816779.1_genomic.fna	Salmonella_enterica	0.5215	565.066 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNOVE010000001.1 Salmonella enterica strain PNUSAS362672 SAMN36433964-rid18787833.denovo.01, whole genome shotgun sequence	486956..487393	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNOVE010000025.1 Salmonella enterica strain PNUSAS362672 SAMN36433964-rid18787833.guided.18, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOVE010000004.1	181803..182671	99.425	870	0						
GCA_032523445.1_PDT001816778.1_genomic.fna	Salmonella_enterica	0.5202	517.924 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOVF010000001.1 Salmonella enterica strain PNUSAS362681 SAMN36433961-rid18787823.denovo.01, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOVF010000030.1 Salmonella enterica strain PNUSAS362681 SAMN36433961-rid18787823.guided.15, whole genome shotgun sequence	20588..21025	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOVF010000003.1	514966..515834	99.195	870	0						
GCA_032523465.1_PDT001816776.1_genomic.fna	Salmonella_enterica	0.5204	484.789 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOVH010000001.1 Salmonella enterica strain PNUSAS362673 SAMN36433957-rid18787803.denovo.01, whole genome shotgun sequence	713942..714379	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOVH010000041.1 Salmonella enterica strain PNUSAS362673 SAMN36433957-rid18787803.guided.26, whole genome shotgun sequence	12043..12480	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNOVH010000023.1 Salmonella enterica strain PNUSAS362673 SAMN36433957-rid18787803.denovo.23, whole genome shotgun sequence	11455..12097																																																						avrA	ABNOVH010000003.1	493780..494649	99.425	870	0						
GCA_032523485.1_PDT001816775.1_genomic.fna	Salmonella_enterica	0.5214	189.465 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOVI010000001.1 Salmonella enterica strain PNUSAS362675 SAMN36433954-rid18787793.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOVI010000047.1 Salmonella enterica strain PNUSAS362675 SAMN36433954-rid18787793.guided.33, whole genome shotgun sequence	30838..31275	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOVI010000028.1 Salmonella enterica strain PNUSAS362675 SAMN36433954-rid18787793.denovo.28, whole genome shotgun sequence	44721..45363	enterobacteriales	IncFII(S)	100	262 / 262	ABNOVI010000028.1 Salmonella enterica strain PNUSAS362675 SAMN36433954-rid18787793.denovo.28, whole genome shotgun sequence	29375..29636																																																avrA	ABNOVI010000003.1	175018..175886	100	869	0						
GCA_032523505.1_PDT001816777.1_genomic.fna	Salmonella_enterica	0.5212	393.724 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOVG010000001.1 Salmonella enterica strain PNUSAS362682 SAMN36433960-rid18787813.denovo.01, whole genome shotgun sequence	449027..449464	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOVG010000057.1 Salmonella enterica strain PNUSAS362682 SAMN36433960-rid18787813.guided.31, whole genome shotgun sequence	4509..4946	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNOVG010000025.1 Salmonella enterica strain PNUSAS362682 SAMN36433960-rid18787813.denovo.25, whole genome shotgun sequence	11451..12093	enterobacteriales	IncFII(Yp)	92.64	231 / 230	ABNOVG010000018.1 Salmonella enterica strain PNUSAS362682 SAMN36433960-rid18787813.denovo.18, whole genome shotgun sequence	2582..2810																																																avrA	ABNOVG010000003.1	99213..100082	99.425	870	0						
GCA_032523525.1_PDT001816773.1_genomic.fna	Salmonella_enterica	0.5209	304.074 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOVK010000001.1 Salmonella enterica strain PNUSAS362677 SAMN36433952-rid18787773.denovo.01, whole genome shotgun sequence	774529..774966	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOVK010000027.1 Salmonella enterica strain PNUSAS362677 SAMN36433952-rid18787773.guided.17, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOVK010000019.1 Salmonella enterica strain PNUSAS362677 SAMN36433952-rid18787773.denovo.21, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABNOVK010000020.1 Salmonella enterica strain PNUSAS362677 SAMN36433952-rid18787773.denovo.22, whole genome shotgun sequence	3384..3645																																																avrA	ABNOVK010000002.1	174839..175708	99.54	870	0						
GCA_032523545.1_PDT001816774.1_genomic.fna	Salmonella_enterica	0.5198	436.064 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOVJ010000001.1 Salmonella enterica strain PNUSAS362686 SAMN36433955-rid18787783.denovo.01, whole genome shotgun sequence	713942..714379	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOVJ010000043.1 Salmonella enterica strain PNUSAS362686 SAMN36433955-rid18787783.guided.17, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNOVJ010000021.1 Salmonella enterica strain PNUSAS362686 SAMN36433955-rid18787783.denovo.22, whole genome shotgun sequence	11455..12097																																																						avrA	ABNOVJ010000006.1	93871..94740	99.425	870	0						
GCA_032523565.1_PDT001816772.1_genomic.fna	Salmonella_enterica	0.521	304.379 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOVL010000001.1 Salmonella enterica strain PNUSAS362679 SAMN36433951-rid18787763.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOVL010000032.1 Salmonella enterica strain PNUSAS362679 SAMN36433951-rid18787763.guided.27, whole genome shotgun sequence	1440..1877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOVL010000023.1 Salmonella enterica strain PNUSAS362679 SAMN36433951-rid18787763.denovo.25, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABNOVL010000019.1 Salmonella enterica strain PNUSAS362679 SAMN36433951-rid18787763.denovo.19, whole genome shotgun sequence	5032..5293																																																avrA	ABNOVL010000002.1	585348..586217	99.54	870	0						
GCA_032524005.1_PDT001816552.1_genomic.fna	Salmonella_enterica	0.5192	269.213 KB	5	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNOWI010000002.1 Salmonella enterica strain PNUSAS362203 SAMN36427403-rid18786913.denovo.02, whole genome shotgun sequence	594977..595414	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNOWI010000035.1 Salmonella enterica strain PNUSAS362203 SAMN36427403-rid18786913.guided.27, whole genome shotgun sequence	5201..5638	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNOWI010000018.1 Salmonella enterica strain PNUSAS362203 SAMN36427403-rid18786913.denovo.18, whole genome shotgun sequence	3373..3906																																																						avrA	ABNOWI010000001.1	554871..555739	99.195	870	0						
GCA_032524025.1_PDT001816549.1_genomic.fna	Salmonella_enterica	0.5222	699.691 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNOWL010000001.1 Salmonella enterica strain PNUSAS362204 SAMN36427390-rid18786783.denovo.01, whole genome shotgun sequence	584127..584564	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNOWL010000018.1 Salmonella enterica strain PNUSAS362204 SAMN36427390-rid18786783.guided.14, whole genome shotgun sequence	17357..17794	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOWL010000002.1	544607..545475	99.425	870	0						
GCA_032524045.1_PDT001816548.1_genomic.fna	Salmonella_enterica	0.521	487.314 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOWM010000002.1 Salmonella enterica strain PNUSAS362201 SAMN36427408-rid18786773.denovo.02, whole genome shotgun sequence	406164..406601	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOWM010000046.1 Salmonella enterica strain PNUSAS362201 SAMN36427408-rid18786773.guided.21, whole genome shotgun sequence	1889..2326	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOWM010000003.1	504316..505186	99.196	871	0						
GCA_032524065.1_PDT001816546.1_genomic.fna	Salmonella_enterica	0.5229	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOWO010000001.1 Salmonella enterica strain PNUSAS362195 SAMN36427405-rid18786763.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOWO010000027.1 Salmonella enterica strain PNUSAS362195 SAMN36427405-rid18786763.guided.18, whole genome shotgun sequence	667..1104	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOWO010000002.1	147026..147895	98.966	870	0						
GCA_032524085.1_PDT001816547.1_genomic.fna	Salmonella_enterica	0.5219	411.847 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNOWN010000001.1 Salmonella enterica strain PNUSAS362199 SAMN36427399-rid18786903.denovo.01, whole genome shotgun sequence	835213..835650	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNOWN010000022.1 Salmonella enterica strain PNUSAS362199 SAMN36427399-rid18786903.guided.16, whole genome shotgun sequence	11125..11562	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOWN010000005.1	182730..183599	99.77	870	0						
GCA_032524105.1_PDT001816545.1_genomic.fna	Salmonella_enterica	0.521	478.434 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOWP010000001.1 Salmonella enterica strain PNUSAS362193 SAMN36427394-rid18786753.denovo.01, whole genome shotgun sequence	780560..780997	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOWP010000021.1 Salmonella enterica strain PNUSAS362193 SAMN36427394-rid18786753.guided.12, whole genome shotgun sequence	11175..11612	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOWP010000012.1 Salmonella enterica strain PNUSAS362193 SAMN36427394-rid18786753.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNOWP010000016.1 Salmonella enterica strain PNUSAS362193 SAMN36427394-rid18786753.denovo.19, whole genome shotgun sequence	3393..3654																																																avrA	ABNOWP010000002.1	553636..554505	99.54	870	0						
GCA_032524125.1_PDT001816544.1_genomic.fna	Salmonella_enterica	0.5218	250.646 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOWQ010000001.1 Salmonella enterica strain PNUSAS362196 SAMN36427402-rid18786743.denovo.01, whole genome shotgun sequence	482683..483120	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOWQ010000051.1 Salmonella enterica strain PNUSAS362196 SAMN36427402-rid18786743.guided.38, whole genome shotgun sequence	3455..3892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOWQ010000021.1 Salmonella enterica strain PNUSAS362196 SAMN36427402-rid18786743.denovo.21, whole genome shotgun sequence	48422..49064	enterobacteriales	IncFII(S)	100	262 / 262	ABNOWQ010000021.1 Salmonella enterica strain PNUSAS362196 SAMN36427402-rid18786743.denovo.21, whole genome shotgun sequence	64149..64410																																																avrA	ABNOWQ010000004.1	158410..159279	99.885	870	0						
GCA_032524145.1_PDT001816543.1_genomic.fna	Salmonella_enterica	0.5212	478.783 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOWR010000001.1 Salmonella enterica strain PNUSAS362200 SAMN36427400-rid18786733.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOWR010000027.1 Salmonella enterica strain PNUSAS362200 SAMN36427400-rid18786733.guided.21, whole genome shotgun sequence	643..1080	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOWR010000013.1 Salmonella enterica strain PNUSAS362200 SAMN36427400-rid18786733.denovo.13, whole genome shotgun sequence	40536..41178	enterobacteriales	IncFII(S)	100	262 / 262	ABNOWR010000017.1 Salmonella enterica strain PNUSAS362200 SAMN36427400-rid18786733.denovo.18, whole genome shotgun sequence	3371..3632																																																avrA	ABNOWR010000002.1	585349..586218	99.54	870	0						
GCA_032524165.1_PDT001816542.1_genomic.fna	Salmonella_enterica	0.5207	428.634 KB	4	aroC_41,dnaN_332,hemD_79,hisD_62,purE_28,sucA_14,thrA_96	1384	38:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_62	purE	100	100	purE_28	sucA	100	100	sucA_14	thrA	100	100	thrA_96	38	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Inverness		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNOWS010000001.1 Salmonella enterica strain PNUSAS362188 SAMN36427393-rid18786893.denovo.01, whole genome shotgun sequence	615006..615443	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNOWS010000043.1 Salmonella enterica strain PNUSAS362188 SAMN36427393-rid18786893.guided.39, whole genome shotgun sequence	119..556	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNOWS010000017.1 Salmonella enterica strain PNUSAS362188 SAMN36427393-rid18786893.denovo.17, whole genome shotgun sequence	38908..39550																																																						avrA	ABNOWS010000002.1	505642..506511	99.54	870	0						
GCA_032524185.1_PDT001816541.1_genomic.fna	Salmonella_enterica	0.5216	430.357 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOWT010000002.1 Salmonella enterica strain PNUSAS362198 SAMN36427391-rid18786723.denovo.02, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOWT010000034.1 Salmonella enterica strain PNUSAS362198 SAMN36427391-rid18786723.guided.23, whole genome shotgun sequence	3266..3703	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOWT010000003.1	514966..515834	99.195	870	0						
GCA_032524205.1_PDT001816539.1_genomic.fna	Salmonella_enterica	0.5222	521.089 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNOWV010000001.1 Salmonella enterica strain PNUSAS362197 SAMN36427404-rid18786703.denovo.01, whole genome shotgun sequence	682474..682911	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNOWV010000021.1 Salmonella enterica strain PNUSAS362197 SAMN36427404-rid18786703.guided.13, whole genome shotgun sequence	36079..36516	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOWV010000002.1	563798..564667	99.77	870	0						
GCA_032524225.1_PDT001816538.1_genomic.fna	Salmonella_enterica	0.5213	655.802 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOWW010000001.1 Salmonella enterica strain PNUSAS362192 SAMN36427407-rid18786693.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOWW010000045.1 Salmonella enterica strain PNUSAS362192 SAMN36427407-rid18786693.guided.20, whole genome shotgun sequence	5925..6362	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOWW010000003.1	504146..505016	99.196	871	0						
GCA_032524265.1_PDT001816551.1_genomic.fna	Salmonella_enterica	0.5226	183.721 KB	8	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOWJ010000004.1 Salmonella enterica strain PNUSAS362189 SAMN36427406-rid18786803.denovo.04, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOWJ010000057.1 Salmonella enterica strain PNUSAS362189 SAMN36427406-rid18786803.guided.41, whole genome shotgun sequence	515..952	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032524285.1_PDT001816550.1_genomic.fna	Salmonella_enterica	0.5223	423.998 KB	3	aroC_111,dnaN_63,hemD_49,hisD_16,purE_41,sucA_15,thrA_3	897	4:l,v:1,7	7	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,lnu(F),lnu(F),floR,floR,qnrS1,qnrS1,tet(A),tet(A)	1	parC_p.T57S	5	Col(pHAD28),Col440I,Col440I,ColRNAI,IncFIC(FII),IncR	aroC	100	100	aroC_111	dnaN	100	100	dnaN_63	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Bredeney		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOWK010000001.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.denovo.01, whole genome shotgun sequence	879115..879552	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNOWK010000025.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.denovo.30, whole genome shotgun sequence	758..1537	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABNOWK010000034.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.guided.28, whole genome shotgun sequence	799..1578	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	98.87	355/438	ABNOWK010000035.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.guided.31, whole genome shotgun sequence	1..355	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNOWK010000018.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.denovo.18, whole genome shotgun sequence	15098..15958	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNOWK010000031.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.guided.22, whole genome shotgun sequence	1607..2467	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	lnu(F)	100	760/822	ABNOWK010000025.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.denovo.30, whole genome shotgun sequence	1669..2428	Lincomycin	EU118119	lnu(F)	100	761/822	ABNOWK010000034.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.guided.28, whole genome shotgun sequence	1710..2470	Lincomycin	EU118119	floR	98.19	1214/1215	ABNOWK010000023.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.denovo.26, whole genome shotgun sequence	2938..4151	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNOWK010000033.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.guided.27, whole genome shotgun sequence	365..1578	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNOWK010000019.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.denovo.19, whole genome shotgun sequence	857..1513	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNOWK010000036.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.guided.32, whole genome shotgun sequence	400..1056	Ciprofloxacin	AB187515	tet(A)	100	1275/1275	ABNOWK010000023.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.denovo.26, whole genome shotgun sequence	1063..2337	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNOWK010000033.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.guided.27, whole genome shotgun sequence	2179..3453	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNOWK010000022.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.denovo.25, whole genome shotgun sequence	3134..3264	enterobacteriales	Col440I	93.81	113 / 114	ABNOWK010000021.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.denovo.24, whole genome shotgun sequence	4215..4326		enterobacteriales	Col440I	95.61	114 / 114	ABNOWK010000024.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.denovo.29, whole genome shotgun sequence	787..900		enterobacteriales	ColRNAI	100	130 / 130	ABNOWK010000020.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.denovo.20, whole genome shotgun sequence	6572..6701		enterobacteriales	IncFIC(FII)	94.19	499 / 499	ABNOWK010000014.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.denovo.14, whole genome shotgun sequence	56093..56589		enterobacteriales	IncR	100	251 / 251	ABNOWK010000019.1 Salmonella enterica strain PNUSAS362194 SAMN36427397-rid18786793.denovo.19, whole genome shotgun sequence	11003..11253																				avrA	ABNOWK010000006.1	95216..96085	98.851	870	0						
GCA_032524305.1_PDT001816536.1_genomic.fna	Salmonella_enterica	0.5193	366.373 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOWY010000001.1 Salmonella enterica strain PNUSAS362187 SAMN36427401-rid18786683.denovo.01, whole genome shotgun sequence	494896..495333	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOWY010000040.1 Salmonella enterica strain PNUSAS362187 SAMN36427401-rid18786683.guided.34, whole genome shotgun sequence	1615..2052	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNOWY010000013.1 Salmonella enterica strain PNUSAS362187 SAMN36427401-rid18786683.denovo.13, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNOWY010000037.1 Salmonella enterica strain PNUSAS362187 SAMN36427401-rid18786683.guided.28, whole genome shotgun sequence	10113..10535	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOWY010000004.1	39482..40351	99.195	870	0						
GCA_032524325.1_PDT001816540.1_genomic.fna	Salmonella_enterica	0.5219	233.69 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNOWU010000003.1 Salmonella enterica strain PNUSAS362202 SAMN36427396-rid18786713.denovo.03, whole genome shotgun sequence	150916..151353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNOWU010000048.1 Salmonella enterica strain PNUSAS362202 SAMN36427396-rid18786713.guided.37, whole genome shotgun sequence	2323..2760	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNOWU010000028.1 Salmonella enterica strain PNUSAS362202 SAMN36427396-rid18786713.denovo.28, whole genome shotgun sequence	14243..14885																																																																	
GCA_032524345.1_PDT001816537.1_genomic.fna	Salmonella_enterica	0.5206	205.877 KB	8	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOWX010000010.1 Salmonella enterica strain PNUSAS362592 SAMN36427205-rid18786883.denovo.10, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOWX010000048.1 Salmonella enterica strain PNUSAS362592 SAMN36427205-rid18786883.guided.36, whole genome shotgun sequence	764..1201	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNOWX010000023.1 Salmonella enterica strain PNUSAS362592 SAMN36427205-rid18786883.denovo.23, whole genome shotgun sequence	34957..35490																																																						avrA	ABNOWX010000006.1	189147..190015	99.54	870	0						
GCA_032524365.1_PDT001816535.1_genomic.fna	Salmonella_enterica	0.5222	350.008 KB	5	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNOWZ010000005.1 Salmonella enterica strain PNUSAS362205 SAMN36427398-rid18786673.denovo.05, whole genome shotgun sequence	86094..86531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNOWZ010000029.1 Salmonella enterica strain PNUSAS362205 SAMN36427398-rid18786673.guided.21, whole genome shotgun sequence	2475..2912	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNOWZ010000009.1	174188..175057	99.77	870	0						
GCA_032524385.1_PDT001816534.1_genomic.fna	Salmonella_enterica	0.5212	406.327 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOXA010000001.1 Salmonella enterica strain PNUSAS362597 SAMN36427306-rid18786663.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOXA010000026.1 Salmonella enterica strain PNUSAS362597 SAMN36427306-rid18786663.guided.18, whole genome shotgun sequence	8131..8568	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOXA010000017.1 Salmonella enterica strain PNUSAS362597 SAMN36427306-rid18786663.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNOXA010000019.1 Salmonella enterica strain PNUSAS362597 SAMN36427306-rid18786663.denovo.22, whole genome shotgun sequence	3403..3664																																																avrA	ABNOXA010000002.1	553641..554510	99.54	870	0						
GCA_032524405.1_PDT001816532.1_genomic.fna	Salmonella_enterica	0.5229	302.454 KB	5	aroC_5,dnaN_14,hemD_21,hisD_9,purE_6,sucA_12,thrA_17	49	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOXC010000001.1 Salmonella enterica strain PNUSAS362190 SAMN36427389-rid18786873.denovo.01, whole genome shotgun sequence	638924..639361	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOXC010000033.1 Salmonella enterica strain PNUSAS362190 SAMN36427389-rid18786873.guided.21, whole genome shotgun sequence	14651..15088	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNOXC010000003.1	140035..140904	99.54	870	0						
GCA_032524425.1_PDT001816533.1_genomic.fna	Salmonella_enterica	0.5218	502.078 KB	4	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOXB010000001.1 Salmonella enterica strain PNUSAS362610 SAMN36427208-rid18786653.denovo.01, whole genome shotgun sequence	648316..648753	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOXB010000022.1 Salmonella enterica strain PNUSAS362610 SAMN36427208-rid18786653.guided.19, whole genome shotgun sequence	2589..3026	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOXB010000004.1	149583..150452	99.425	870	0						
GCA_032524445.1_PDT001816531.1_genomic.fna	Salmonella_enterica	0.5209	495.838 KB	3	aroC_41,dnaN_332,hemD_79,hisD_62,purE_28,sucA_14,thrA_96	1384	38:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_62	purE	100	100	purE_28	sucA	100	100	sucA_14	thrA	100	100	thrA_96	38	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Inverness		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNOXD010000001.1 Salmonella enterica strain PNUSAS362206 SAMN36427395-rid18786643.denovo.01, whole genome shotgun sequence	706966..707403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNOXD010000024.1 Salmonella enterica strain PNUSAS362206 SAMN36427395-rid18786643.guided.18, whole genome shotgun sequence	3082..3519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNOXD010000011.1 Salmonella enterica strain PNUSAS362206 SAMN36427395-rid18786643.denovo.11, whole genome shotgun sequence	109357..109999																																																						avrA	ABNOXD010000002.1	537258..538127	99.54	870	0						
GCA_032524465.1_PDT001816530.1_genomic.fna	Salmonella_enterica	0.5217	670.42 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOXE010000001.1 Salmonella enterica strain PNUSAS362191 SAMN36427392-rid18786633.denovo.01, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNOXE010000033.1 Salmonella enterica strain PNUSAS362191 SAMN36427392-rid18786633.guided.23, whole genome shotgun sequence	2359..2796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOXE010000008.1	150710..151578	99.195	870	0						
GCA_032524485.1_PDT001816529.1_genomic.fna	Salmonella_enterica	0.5207	707.273 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOXF010000001.1 Salmonella enterica strain PNUSAS362605 SAMN36427308-rid18786623.denovo.01, whole genome shotgun sequence	643436..643873	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOXF010000017.1 Salmonella enterica strain PNUSAS362605 SAMN36427308-rid18786623.guided.10, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032524505.1_PDT001816528.1_genomic.fna	Salmonella_enterica	0.5213	406.453 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOXG010000001.1 Salmonella enterica strain PNUSAS362595 SAMN36427199-rid18786613.denovo.01, whole genome shotgun sequence	780652..781089	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOXG010000028.1 Salmonella enterica strain PNUSAS362595 SAMN36427199-rid18786613.guided.26, whole genome shotgun sequence	310..747	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOXG010000021.1 Salmonella enterica strain PNUSAS362595 SAMN36427199-rid18786613.denovo.22, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABNOXG010000022.1 Salmonella enterica strain PNUSAS362595 SAMN36427199-rid18786613.denovo.24, whole genome shotgun sequence	3394..3655																																																avrA	ABNOXG010000002.1	553678..554547	99.54	870	0						
GCA_032524525.1_PDT001816527.1_genomic.fna	Salmonella_enterica	0.5204	478.473 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOXI010000001.1 Salmonella enterica strain PNUSAS362594 SAMN36427303-rid18786863.denovo.01, whole genome shotgun sequence	774378..774815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOXI010000029.1 Salmonella enterica strain PNUSAS362594 SAMN36427303-rid18786863.guided.21, whole genome shotgun sequence	20663..21100	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOXI010000020.1 Salmonella enterica strain PNUSAS362594 SAMN36427303-rid18786863.denovo.22, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNOXI010000022.1 Salmonella enterica strain PNUSAS362594 SAMN36427303-rid18786863.denovo.25, whole genome shotgun sequence	3403..3664		enterobacteriales	IncX1	98.93	374 / 374	ABNOXI010000016.1 Salmonella enterica strain PNUSAS362594 SAMN36427303-rid18786863.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABNOXI010000002.1	553682..554551	99.54	870	0						
GCA_032524545.1_PDT001816526.1_genomic.fna	Salmonella_enterica	0.5208	427.816 KB	4	aroC_13,dnaN_127,hemD_506,hisD_113,purE_114,sucA_107,thrA_4	3095	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_506	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOXH010000001.1 Salmonella enterica strain PNUSAS362604 SAMN36427211-rid18786603.denovo.01, whole genome shotgun sequence	498131..498568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOXH010000030.1 Salmonella enterica strain PNUSAS362604 SAMN36427211-rid18786603.guided.20, whole genome shotgun sequence	10979..11416	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOXH010000003.1	140447..141316	99.425	870	0						
GCA_032524565.1_PDT001816525.1_genomic.fna	Salmonella_enterica	0.5219	133.825 KB	12	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNOXJ010000009.1 Salmonella enterica strain PNUSAS362611 SAMN36427202-rid18786593.denovo.09, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNOXJ010000081.1 Salmonella enterica strain PNUSAS362611 SAMN36427202-rid18786593.guided.61, whole genome shotgun sequence	2557..2994	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOXJ010000004.1	93997..94866	98.851	870	0						
GCA_032524585.1_PDT001816524.1_genomic.fna	Salmonella_enterica	0.5212	571.532 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOXL010000001.1 Salmonella enterica strain PNUSAS362593 SAMN36427307-rid18786583.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOXL010000024.1 Salmonella enterica strain PNUSAS362593 SAMN36427307-rid18786583.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOXL010000017.1 Salmonella enterica strain PNUSAS362593 SAMN36427307-rid18786583.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNOXL010000014.1 Salmonella enterica strain PNUSAS362593 SAMN36427307-rid18786583.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNOXL010000002.1	585348..586217	99.54	870	0						
GCA_032524625.1_PDT001816522.1_genomic.fna	Salmonella_enterica	0.5211	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOXN010000001.1 Salmonella enterica strain PNUSAS362607 SAMN36427304-rid18786853.denovo.01, whole genome shotgun sequence	774368..774805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOXN010000028.1 Salmonella enterica strain PNUSAS362607 SAMN36427304-rid18786853.guided.15, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOXN010000019.1 Salmonella enterica strain PNUSAS362607 SAMN36427304-rid18786853.denovo.20, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNOXN010000021.1 Salmonella enterica strain PNUSAS362607 SAMN36427304-rid18786853.denovo.24, whole genome shotgun sequence	3402..3663																																																avrA	ABNOXN010000002.1	553636..554505	99.54	870	0						
GCA_032524665.1_PDT001816519.1_genomic.fna	Salmonella_enterica	0.5217	225.671 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOXO010000002.1 Salmonella enterica strain PNUSAS362603 SAMN36427210-rid18786553.denovo.02, whole genome shotgun sequence	145359..145796	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOXO010000050.1 Salmonella enterica strain PNUSAS362603 SAMN36427210-rid18786553.guided.30, whole genome shotgun sequence	18166..18603	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOXO010000024.1 Salmonella enterica strain PNUSAS362603 SAMN36427210-rid18786553.denovo.24, whole genome shotgun sequence	44697..45339	enterobacteriales	IncFII(S)	100	262 / 262	ABNOXO010000024.1 Salmonella enterica strain PNUSAS362603 SAMN36427210-rid18786553.denovo.24, whole genome shotgun sequence	29351..29612																																																avrA	ABNOXO010000001.1	450793..451662	99.885	870	0						
GCA_032524685.1_PDT001816520.1_genomic.fna	Salmonella_enterica	0.5206	433.312 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOXP010000001.1 Salmonella enterica strain PNUSAS362598 SAMN36427305-rid18786843.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOXP010000026.1 Salmonella enterica strain PNUSAS362598 SAMN36427305-rid18786843.guided.20, whole genome shotgun sequence	6381..6818	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOXP010000017.1 Salmonella enterica strain PNUSAS362598 SAMN36427305-rid18786843.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNOXP010000019.1 Salmonella enterica strain PNUSAS362598 SAMN36427305-rid18786843.denovo.22, whole genome shotgun sequence	3429..3690		enterobacteriales	IncX1	98.93	374 / 374	ABNOXP010000015.1 Salmonella enterica strain PNUSAS362598 SAMN36427305-rid18786843.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNOXP010000002.1	553684..554553	99.54	870	0						
GCA_032524705.1_PDT001816517.1_genomic.fna	Salmonella_enterica	0.5224	379.434 KB	4	aroC_81,dnaN_283,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	909	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_283	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOXR010000001.1 Salmonella enterica strain PNUSAS362599 SAMN36427201-rid18786833.denovo.01, whole genome shotgun sequence	470134..470571	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOXR010000024.1 Salmonella enterica strain PNUSAS362599 SAMN36427201-rid18786833.guided.19, whole genome shotgun sequence	1019..1456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOXR010000002.1	606243..607112	99.31	870	0						
GCA_032524725.1_PDT001816518.1_genomic.fna	Salmonella_enterica	0.5225	648.552 KB	2	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNOXQ010000001.1 Salmonella enterica strain PNUSAS362609 SAMN36427207-rid18786543.denovo.01, whole genome shotgun sequence	1108124..1108561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNOXQ010000021.1 Salmonella enterica strain PNUSAS362609 SAMN36427207-rid18786543.guided.14, whole genome shotgun sequence	9924..10361	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNOXQ010000002.1	553822..554691	99.77	870	0						
GCA_032524745.1_PDT001816516.1_genomic.fna	Salmonella_enterica	0.5214	347.445 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOXS010000003.1 Salmonella enterica strain PNUSAS362601 SAMN36427206-rid18786533.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOXS010000049.1 Salmonella enterica strain PNUSAS362601 SAMN36427206-rid18786533.guided.36, whole genome shotgun sequence	3930..4367	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOXS010000023.1 Salmonella enterica strain PNUSAS362601 SAMN36427206-rid18786533.denovo.23, whole genome shotgun sequence	44726..45368	enterobacteriales	IncFII(S)	100	262 / 262	ABNOXS010000023.1 Salmonella enterica strain PNUSAS362601 SAMN36427206-rid18786533.denovo.23, whole genome shotgun sequence	29380..29641		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNOXS010000017.1 Salmonella enterica strain PNUSAS362601 SAMN36427206-rid18786533.denovo.17, whole genome shotgun sequence	76348..76489																																									avrA	ABNOXS010000004.1	209222..210090	100	869	0						
GCA_032524765.1_PDT001816514.1_genomic.fna	Salmonella_enterica	0.5226	443.575 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOXU010000001.1 Salmonella enterica strain PNUSAS362602 SAMN36427209-rid18786523.denovo.01, whole genome shotgun sequence	454798..455235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNOXU010000027.1 Salmonella enterica strain PNUSAS362602 SAMN36427209-rid18786523.guided.19, whole genome shotgun sequence	3436..3873	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOXU010000002.1	183135..184004	98.966	870	0						
GCA_032524785.1_PDT001816515.1_genomic.fna	Salmonella_enterica	0.522	236.102 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNOXT010000001.1 Salmonella enterica strain PNUSAS362600 SAMN36427212-rid18786823.denovo.01, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNOXT010000049.1 Salmonella enterica strain PNUSAS362600 SAMN36427212-rid18786823.guided.34, whole genome shotgun sequence	5003..5440	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNOXT010000025.1 Salmonella enterica strain PNUSAS362600 SAMN36427212-rid18786823.denovo.25, whole genome shotgun sequence	44715..45357	enterobacteriales	IncFII(S)	100	262 / 262	ABNOXT010000025.1 Salmonella enterica strain PNUSAS362600 SAMN36427212-rid18786823.denovo.25, whole genome shotgun sequence	29369..29630																																																avrA	ABNOXT010000004.1	155216..156084	100	869	0						
GCA_032524805.1_PDT001816513.1_genomic.fna	Salmonella_enterica	0.5215	278.347 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNOXV010000001.1 Salmonella enterica strain PNUSAS362596 SAMN36427204-rid18786513.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOXV010000031.1 Salmonella enterica strain PNUSAS362596 SAMN36427204-rid18786513.denovo.34, whole genome shotgun sequence	808..1644	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOXV010000031.1 Salmonella enterica strain PNUSAS362596 SAMN36427204-rid18786513.denovo.34, whole genome shotgun sequence	1644..2447	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNOXV010000049.1 Salmonella enterica strain PNUSAS362596 SAMN36427204-rid18786513.guided.31, whole genome shotgun sequence	7531..7968	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOXV010000052.1 Salmonella enterica strain PNUSAS362596 SAMN36427204-rid18786513.guided.38, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNOXV010000052.1 Salmonella enterica strain PNUSAS362596 SAMN36427204-rid18786513.guided.38, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNOXV010000053.1 Salmonella enterica strain PNUSAS362596 SAMN36427204-rid18786513.guided.39, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNOXV010000053.1 Salmonella enterica strain PNUSAS362596 SAMN36427204-rid18786513.guided.39, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNOXV010000041.1 Salmonella enterica strain PNUSAS362596 SAMN36427204-rid18786513.denovo.48, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNOXV010000054.1 Salmonella enterica strain PNUSAS362596 SAMN36427204-rid18786513.guided.47, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNOXV010000031.1 Salmonella enterica strain PNUSAS362596 SAMN36427204-rid18786513.denovo.34, whole genome shotgun sequence	2508..3323	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNOXV010000052.1 Salmonella enterica strain PNUSAS362596 SAMN36427204-rid18786513.guided.38, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNOXV010000053.1 Salmonella enterica strain PNUSAS362596 SAMN36427204-rid18786513.guided.39, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNOXV010000029.1 Salmonella enterica strain PNUSAS362596 SAMN36427204-rid18786513.denovo.30, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNOXV010000048.1 Salmonella enterica strain PNUSAS362596 SAMN36427204-rid18786513.guided.29, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																														avrA	ABNOXV010000002.1	540570..541439	99.885	870	0						
GCA_032524825.1_PDT001816511.1_genomic.fna	Salmonella_enterica	0.5223	262.317 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNOXX010000002.1 Salmonella enterica strain PNUSAS362608 SAMN36427200-rid18786503.denovo.02, whole genome shotgun sequence	403907..404344	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNOXX010000043.1 Salmonella enterica strain PNUSAS362608 SAMN36427200-rid18786503.guided.27, whole genome shotgun sequence	3916..4353	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNOXX010000028.1 Salmonella enterica strain PNUSAS362608 SAMN36427200-rid18786503.denovo.31, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNOXX010000029.1 Salmonella enterica strain PNUSAS362608 SAMN36427200-rid18786503.denovo.32, whole genome shotgun sequence	2528..2639																																																avrA	ABNOXX010000001.1	557377..558245	99.425	870	0						
GCA_032524845.1_PDT001816512.1_genomic.fna	Salmonella_enterica	0.5215	667.907 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	ColRNAI,IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNOXW010000001.1 Salmonella enterica strain PNUSAS362606 SAMN36427203-rid18786813.denovo.01, whole genome shotgun sequence	640527..640964	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNOXW010000026.1 Salmonella enterica strain PNUSAS362606 SAMN36427203-rid18786813.guided.20, whole genome shotgun sequence	5708..6145	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABNOXW010000020.1 Salmonella enterica strain PNUSAS362606 SAMN36427203-rid18786813.denovo.23, whole genome shotgun sequence	3981..4111	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNOXW010000015.1 Salmonella enterica strain PNUSAS362606 SAMN36427203-rid18786813.denovo.15, whole genome shotgun sequence	68576..68717																																																avrA	ABNOXW010000002.1	506127..506996	99.77	870	0						
GCA_032524965.1_PDT001816499.1_genomic.fna	Salmonella_enterica	0.523	375.54 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNOYD010000001.1 Salmonella enterica strain PNUSAS362584 SAMN36418787-rid18786393.denovo.01, whole genome shotgun sequence	460173..460610	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNOYD010000030.1 Salmonella enterica strain PNUSAS362584 SAMN36418787-rid18786393.guided.18, whole genome shotgun sequence	5628..6065	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOYD010000003.1	149828..150697	99.655	870	0						
GCA_032524985.1_PDT001816498.1_genomic.fna	Salmonella_enterica	0.5222	607.786 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNOYE010000001.1 Salmonella enterica strain PNUSAS362580 SAMN36418786-rid18786383.denovo.01, whole genome shotgun sequence	788201..788638	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNOYE010000025.1 Salmonella enterica strain PNUSAS362580 SAMN36418786-rid18786383.guided.20, whole genome shotgun sequence	9310..9747	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOYE010000003.1	95210..96079	98.966	870	0						
GCA_032525005.1_PDT001816497.1_genomic.fna	Salmonella_enterica	0.5212	264.743 KB	6	aroC_22,dnaN_104,hemD_48,hisD_231,purE_114,sucA_107,thrA_4	1069	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_48	hisD	100	100	hisD_231	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNOYF010000001.1 Salmonella enterica strain PNUSAS362586 SAMN36418789-rid18786373.denovo.01, whole genome shotgun sequence	497995..498432	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNOYF010000032.1 Salmonella enterica strain PNUSAS362586 SAMN36418789-rid18786373.guided.28, whole genome shotgun sequence	3745..4182	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOYF010000010.1	140299..141168	99.54	870	0						
GCA_032525025.1_PDT001816496.1_genomic.fna	Salmonella_enterica	0.5215	405.442 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNOYG010000001.1 Salmonella enterica strain PNUSAS362581 SAMN36418785-rid18786363.denovo.01, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.22	385/438	ABNOYG010000034.1 Salmonella enterica strain PNUSAS362581 SAMN36418785-rid18786363.guided.23, whole genome shotgun sequence	1..385	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOYG010000008.1	192373..193241	99.195	870	0						
GCA_032525045.1_PDT001816494.1_genomic.fna	Salmonella_enterica	0.5214	412.183 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOYI010000001.1 Salmonella enterica strain PNUSAS362588 SAMN36418784-rid18786343.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOYI010000025.1 Salmonella enterica strain PNUSAS362588 SAMN36418784-rid18786343.guided.22, whole genome shotgun sequence	664..1101	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOYI010000018.1 Salmonella enterica strain PNUSAS362588 SAMN36418784-rid18786343.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNOYI010000019.1 Salmonella enterica strain PNUSAS362588 SAMN36418784-rid18786343.denovo.20, whole genome shotgun sequence	3401..3662																																																avrA	ABNOYI010000002.1	553648..554517	99.54	870	0						
GCA_032525065.1_PDT001816492.1_genomic.fna	Salmonella_enterica	0.5218	310.688 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNOYK010000001.1 Salmonella enterica strain PNUSAS362573 SAMN36418783-rid18786323.denovo.01, whole genome shotgun sequence	460185..460622	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNOYK010000039.1 Salmonella enterica strain PNUSAS362573 SAMN36418783-rid18786323.guided.26, whole genome shotgun sequence	1748..2185	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNOYK010000003.1	149923..150792	99.655	870	0						
GCA_032525085.1_PDT001816495.1_genomic.fna	Salmonella_enterica	0.5213	477.515 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOYH010000001.1 Salmonella enterica strain PNUSAS362578 SAMN36418788-rid18786353.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOYH010000027.1 Salmonella enterica strain PNUSAS362578 SAMN36418788-rid18786353.guided.20, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOYH010000016.1 Salmonella enterica strain PNUSAS362578 SAMN36418788-rid18786353.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNOYH010000018.1 Salmonella enterica strain PNUSAS362578 SAMN36418788-rid18786353.denovo.21, whole genome shotgun sequence	3428..3689																																																avrA	ABNOYH010000002.1	553636..554505	99.54	870	0						
GCA_032525105.1_PDT001816493.1_genomic.fna	Salmonella_enterica	0.5212	489.888 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOYJ010000001.1 Salmonella enterica strain PNUSAS362585 SAMN36418781-rid18786333.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOYJ010000025.1 Salmonella enterica strain PNUSAS362585 SAMN36418781-rid18786333.guided.20, whole genome shotgun sequence	8047..8484	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOYJ010000017.1 Salmonella enterica strain PNUSAS362585 SAMN36418781-rid18786333.denovo.19, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNOYJ010000018.1 Salmonella enterica strain PNUSAS362585 SAMN36418781-rid18786333.denovo.21, whole genome shotgun sequence	3392..3653																																																avrA	ABNOYJ010000002.1	553636..554505	99.54	870	0						
GCA_032525125.1_PDT001816491.1_genomic.fna	Salmonella_enterica	0.5222	732.823 KB	3	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOYL010000002.1 Salmonella enterica strain PNUSAS362577 SAMN36418774-rid18786313.denovo.02, whole genome shotgun sequence	624559..624996	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNOYL010000022.1 Salmonella enterica strain PNUSAS362577 SAMN36418774-rid18786313.guided.18, whole genome shotgun sequence	114..551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032525145.1_PDT001816490.1_genomic.fna	Salmonella_enterica	0.5206	452.629 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNOYM010000001.1 Salmonella enterica strain PNUSAS362583 SAMN36418778-rid18786303.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNOYM010000026.1 Salmonella enterica strain PNUSAS362583 SAMN36418778-rid18786303.guided.20, whole genome shotgun sequence	2259..2696	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNOYM010000019.1 Salmonella enterica strain PNUSAS362583 SAMN36418778-rid18786303.denovo.22, whole genome shotgun sequence	239..369																																																						avrA	ABNOYM010000002.1	560870..561739	99.425	870	0						
GCA_032525165.1_PDT001816489.1_genomic.fna	Salmonella_enterica	0.5215	720.971 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNOYN010000001.1 Salmonella enterica strain PNUSAS362579 SAMN36418779-rid18786293.denovo.01, whole genome shotgun sequence	716727..717164	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNOYN010000017.1 Salmonella enterica strain PNUSAS362579 SAMN36418779-rid18786293.guided.12, whole genome shotgun sequence	20568..21005	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNOYN010000003.1	160638..161507	99.54	870	0						
GCA_032525185.1_PDT001816488.1_genomic.fna	Salmonella_enterica	0.5214	439.78 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOYO010000001.1 Salmonella enterica strain PNUSAS362587 SAMN36418777-rid18786283.denovo.01, whole genome shotgun sequence	774369..774806	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOYO010000026.1 Salmonella enterica strain PNUSAS362587 SAMN36418777-rid18786283.guided.23, whole genome shotgun sequence	2294..2731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOYO010000017.1 Salmonella enterica strain PNUSAS362587 SAMN36418777-rid18786283.denovo.17, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABNOYO010000019.1 Salmonella enterica strain PNUSAS362587 SAMN36418777-rid18786283.denovo.20, whole genome shotgun sequence	3383..3644																																																avrA	ABNOYO010000002.1	553624..554493	99.54	870	0						
GCA_032525205.1_PDT001816487.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOYP010000001.1 Salmonella enterica strain PNUSAS362582 SAMN36418780-rid18786273.denovo.01, whole genome shotgun sequence	780560..780997	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOYP010000025.1 Salmonella enterica strain PNUSAS362582 SAMN36418780-rid18786273.guided.20, whole genome shotgun sequence	5806..6243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOYP010000018.1 Salmonella enterica strain PNUSAS362582 SAMN36418780-rid18786273.denovo.19, whole genome shotgun sequence	6811..7453	enterobacteriales	IncFII(S)	100	262 / 262	ABNOYP010000019.1 Salmonella enterica strain PNUSAS362582 SAMN36418780-rid18786273.denovo.21, whole genome shotgun sequence	3408..3669																																																avrA	ABNOYP010000002.1	553636..554505	99.54	870	0						
GCA_032525225.1_PDT001816485.1_genomic.fna	Salmonella_enterica	0.5224	728.806 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNOYR010000001.1 Salmonella enterica strain PNUSAS362575 SAMN36418776-rid18786253.denovo.01, whole genome shotgun sequence	481982..482419	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNOYR010000018.1 Salmonella enterica strain PNUSAS362575 SAMN36418776-rid18786253.guided.14, whole genome shotgun sequence	20596..21033	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNOYR010000003.1	553810..554679	99.77	870	0						
GCA_032525245.1_PDT001816484.1_genomic.fna	Salmonella_enterica	0.5201	170.337 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNOYT010000011.1 Salmonella enterica strain PNUSAS362576 SAMN36418775-rid18786243.denovo.11, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNOYT010000057.1 Salmonella enterica strain PNUSAS362576 SAMN36418775-rid18786243.guided.44, whole genome shotgun sequence	4056..4490	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032525265.1_PDT001816486.1_genomic.fna	Salmonella_enterica	0.5214	375.769 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNOYQ010000002.1 Salmonella enterica strain PNUSAS362574 SAMN36418782-rid18786263.denovo.02, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNOYQ010000028.1 Salmonella enterica strain PNUSAS362574 SAMN36418782-rid18786263.guided.24, whole genome shotgun sequence	2838..3275	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNOYQ010000020.1 Salmonella enterica strain PNUSAS362574 SAMN36418782-rid18786263.denovo.20, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNOYQ010000021.1 Salmonella enterica strain PNUSAS362574 SAMN36418782-rid18786263.denovo.23, whole genome shotgun sequence	3397..3658																																																avrA	ABNOYQ010000001.1	553636..554505	99.54	870	0						
GCA_032528025.1_PDT001816317.1_genomic.fna	Salmonella_enterica	0.5192	285.279 KB	6	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPEB010000006.1 Salmonella enterica strain PNUSAS362567 SAMN36417224-rid18784593.denovo.06, whole genome shotgun sequence	149412..149849	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPEB010000037.1 Salmonella enterica strain PNUSAS362567 SAMN36417224-rid18784593.guided.25, whole genome shotgun sequence	11945..12382	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032528065.1_PDT001816316.1_genomic.fna	Salmonella_enterica	0.5214	183.976 KB	9	aroC_17,dnaN_8,hemD_3,hisD_14,purE_97,sucA_19,thrA_14	1583	4:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_8	hemD	100	100	hemD_3	hisD	100	100	hisD_14	purE	100	100	purE_97	sucA	100	100	sucA_19	thrA	100	100	thrA_14	4	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Abony		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPEC010000017.1 Salmonella enterica strain PNUSAS362569 SAMN36417225-rid18784583.denovo.17, whole genome shotgun sequence	61673..62110	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPEC010000047.1 Salmonella enterica strain PNUSAS362569 SAMN36417225-rid18784583.guided.41, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNPEC010000003.1	144002..144871	99.31	870	0						
GCA_032528085.1_PDT001816315.1_genomic.fna	Salmonella_enterica	0.5216	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPED010000001.1 Salmonella enterica strain PNUSAS362571 SAMN36417228-rid18784573.denovo.01, whole genome shotgun sequence	833828..834265	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPED010000024.1 Salmonella enterica strain PNUSAS362571 SAMN36417228-rid18784573.guided.14, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPED010000002.1	183141..184010	98.966	870	0						
GCA_032528105.1_PDT001816313.1_genomic.fna	Salmonella_enterica	0.5199	390.802 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPEE010000001.1 Salmonella enterica strain PNUSAS362570 SAMN36417230-rid18784553.denovo.01, whole genome shotgun sequence	513253..513690	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPEE010000032.1 Salmonella enterica strain PNUSAS362570 SAMN36417230-rid18784553.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPEE010000009.1	140075..140943	99.195	870	0						
GCA_032528125.1_PDT001816314.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPEF010000001.1 Salmonella enterica strain PNUSAS362568 SAMN36417229-rid18784563.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPEF010000021.1 Salmonella enterica strain PNUSAS362568 SAMN36417229-rid18784563.guided.12, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPEF010000015.1 Salmonella enterica strain PNUSAS362568 SAMN36417229-rid18784563.denovo.18, whole genome shotgun sequence	6836..7478	enterobacteriales	IncFII(S)	100	262 / 262	ABNPEF010000016.1 Salmonella enterica strain PNUSAS362568 SAMN36417229-rid18784563.denovo.19, whole genome shotgun sequence	3437..3698																																																avrA	ABNPEF010000002.1	553312..554181	99.54	870	0						
GCA_032528145.1_PDT001816312.1_genomic.fna	Salmonella_enterica	0.5204	302.519 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_110,sucA_9,thrA_2	302	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_110	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPEH010000002.1 Salmonella enterica strain PNUSAS362566 SAMN36417227-rid18784543.denovo.02, whole genome shotgun sequence	207030..207467	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPEH010000045.1 Salmonella enterica strain PNUSAS362566 SAMN36417227-rid18784543.guided.16, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPEH010000031.1 Salmonella enterica strain PNUSAS362566 SAMN36417227-rid18784543.denovo.33, whole genome shotgun sequence	6821..7463	enterobacteriales	IncFII(S)	100	262 / 262	ABNPEH010000027.1 Salmonella enterica strain PNUSAS362566 SAMN36417227-rid18784543.denovo.29, whole genome shotgun sequence	29426..29687		enterobacteriales	IncI2(Delta)	100	316 / 316	ABNPEH010000020.1 Salmonella enterica strain PNUSAS362566 SAMN36417227-rid18784543.denovo.21, whole genome shotgun sequence	27635..27950																																									avrA	ABNPEH010000001.1	452101..452970	99.885	870	0						
GCA_032528165.1_PDT001816311.1_genomic.fna	Salmonella_enterica	0.5218	520.146 KB	4	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPEG010000001.1 Salmonella enterica strain PNUSAS362572 SAMN36417226-rid18784533.denovo.01, whole genome shotgun sequence	137028..137465	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPEG010000026.1 Salmonella enterica strain PNUSAS362572 SAMN36417226-rid18784533.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPEG010000002.1	510267..511133	99.08	870	0						
GCA_032528265.1_PDT001816299.1_genomic.fna	Salmonella_enterica	0.5193	152.944 KB	10	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPEL010000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323392 SAMN36416742-rid18784423.denovo.09, whole genome shotgun sequence	14898..15335	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPEL010000040.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323392 SAMN36416742-rid18784423.denovo.42, whole genome shotgun sequence	21873..22709	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPEL010000040.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323392 SAMN36416742-rid18784423.denovo.42, whole genome shotgun sequence	22709..23512	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNPEL010000069.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323392 SAMN36416742-rid18784423.guided.45, whole genome shotgun sequence	14939..15376	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPEL010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323392 SAMN36416742-rid18784423.guided.54, whole genome shotgun sequence	3033..3869	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPEL010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323392 SAMN36416742-rid18784423.guided.54, whole genome shotgun sequence	2230..3033	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNPEL010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323392 SAMN36416742-rid18784423.denovo.53, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPEL010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323392 SAMN36416742-rid18784423.guided.55, whole genome shotgun sequence	3608..4813	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNPEL010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323392 SAMN36416742-rid18784423.denovo.33, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNPEL010000040.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323392 SAMN36416742-rid18784423.denovo.42, whole genome shotgun sequence	20989..21250		enterobacteriales	IncFII	96.95	262 / 261	ABNPEL010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323392 SAMN36416742-rid18784423.guided.54, whole genome shotgun sequence	4492..4753		enterobacteriales	IncX1	100	373 / 373	ABNPEL010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323392 SAMN36416742-rid18784423.denovo.49, whole genome shotgun sequence	2153..2525																																		avrA	ABNPEL010000028.1	39484..40353	99.655	870	0						
GCA_032528285.1_PDT001816298.1_genomic.fna	Salmonella_enterica	0.5186	237.333 KB	7	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPEM010000001.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323393 SAMN36416743-rid18784413.denovo.01, whole genome shotgun sequence	389297..389734	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPEM010000036.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323393 SAMN36416743-rid18784413.denovo.39, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPEM010000036.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323393 SAMN36416743-rid18784413.denovo.39, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNPEM010000056.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323393 SAMN36416743-rid18784413.guided.16, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPEM010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323393 SAMN36416743-rid18784413.guided.43, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPEM010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323393 SAMN36416743-rid18784413.guided.43, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNPEM010000038.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323393 SAMN36416743-rid18784413.denovo.41, whole genome shotgun sequence	1430..2635	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPEM010000059.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323393 SAMN36416743-rid18784413.guided.42, whole genome shotgun sequence	4117..5322	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNPEM010000037.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323393 SAMN36416743-rid18784413.denovo.40, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNPEM010000036.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323393 SAMN36416743-rid18784413.denovo.39, whole genome shotgun sequence	5800..6061		enterobacteriales	IncFII	96.95	262 / 261	ABNPEM010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323393 SAMN36416743-rid18784413.guided.43, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABNPEM010000034.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323393 SAMN36416743-rid18784413.denovo.37, whole genome shotgun sequence	2153..2525																																		avrA	ABNPEM010000003.1	39484..40353	99.655	870	0						
GCA_032528305.1_PDT001816297.1_genomic.fna	Salmonella_enterica	0.5194	148.812 KB	11	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPEO010000015.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323390 SAMN36416740-rid18784403.denovo.15, whole genome shotgun sequence	75499..75936	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPEO010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323390 SAMN36416740-rid18784403.guided.48, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNPEO010000069.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323390 SAMN36416740-rid18784403.denovo.72, whole genome shotgun sequence	763..893	enterobacteriales	IncHI2A	99.52	630 / 630	ABNPEO010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323390 SAMN36416740-rid18784403.denovo.52, whole genome shotgun sequence	5615..6244		enterobacteriales	IncX1	100	373 / 373	ABNPEO010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323390 SAMN36416740-rid18784403.denovo.55, whole genome shotgun sequence	2153..2525																																									avrA	ABNPEO010000028.1	39484..40353	99.655	870	0						
GCA_032528325.1_PDT001816296.1_genomic.fna	Salmonella_enterica	0.5212	729.701 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPEN010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323391 SAMN36416741-rid18784393.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPEN010000031.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323391 SAMN36416741-rid18784393.guided.23, whole genome shotgun sequence	2292..2729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPEN010000019.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323391 SAMN36416741-rid18784393.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNPEN010000021.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323391 SAMN36416741-rid18784393.denovo.24, whole genome shotgun sequence	3429..3690																																																avrA	ABNPEN010000003.1	553636..554505	99.54	870	0						
GCA_032528345.1_PDT001816295.1_genomic.fna	Salmonella_enterica	0.519	168.281 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPEP010000014.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323395 SAMN36416745-rid18784383.denovo.14, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPEP010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323395 SAMN36416745-rid18784383.denovo.46, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNPEP010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323395 SAMN36416745-rid18784383.denovo.46, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNPEP010000068.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323395 SAMN36416745-rid18784383.guided.31, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPEP010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323395 SAMN36416745-rid18784383.guided.53, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNPEP010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323395 SAMN36416745-rid18784383.guided.53, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNPEP010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323395 SAMN36416745-rid18784383.denovo.51, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPEP010000072.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323395 SAMN36416745-rid18784383.guided.59, whole genome shotgun sequence	412..1617	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNPEP010000038.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323395 SAMN36416745-rid18784383.denovo.40, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNPEP010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323395 SAMN36416745-rid18784383.denovo.46, whole genome shotgun sequence	5800..6061		enterobacteriales	IncFII	96.95	262 / 261	ABNPEP010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323395 SAMN36416745-rid18784383.guided.53, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNPEP010000030.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323395 SAMN36416745-rid18784383.denovo.30, whole genome shotgun sequence	30336..30477		enterobacteriales	IncX1	100	373 / 373	ABNPEP010000036.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323395 SAMN36416745-rid18784383.denovo.38, whole genome shotgun sequence	5530..5902																											avrA	ABNPEP010000027.1	39484..40353	99.655	870	0						
GCA_032528365.1_PDT001816293.1_genomic.fna	Salmonella_enterica	0.5219	208.893 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPES010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323396 SAMN36416739-rid18784363.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNPES010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323396 SAMN36416739-rid18784363.denovo.49, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPES010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323396 SAMN36416739-rid18784363.denovo.49, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNPES010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323396 SAMN36416739-rid18784363.guided.36, whole genome shotgun sequence	3730..4167	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNPES010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323396 SAMN36416739-rid18784363.guided.47, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPES010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323396 SAMN36416739-rid18784363.guided.47, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNPES010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323396 SAMN36416739-rid18784363.denovo.55, whole genome shotgun sequence	967..1842	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNPES010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323396 SAMN36416739-rid18784363.guided.57, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNPES010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323396 SAMN36416739-rid18784363.denovo.44, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNPES010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323396 SAMN36416739-rid18784363.guided.46, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNPES010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323396 SAMN36416739-rid18784363.denovo.27, whole genome shotgun sequence	945..1784	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPES010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323396 SAMN36416739-rid18784363.guided.40, whole genome shotgun sequence	983..1822	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPES010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323396 SAMN36416739-rid18784363.denovo.27, whole genome shotgun sequence	14301..15500	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPES010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323396 SAMN36416739-rid18784363.guided.42, whole genome shotgun sequence	1917..3116	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPES010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323396 SAMN36416739-rid18784363.denovo.33, whole genome shotgun sequence	9109..9668																																																						avrA	ABNPES010000002.1	149895..150764	99.655	870	0						
GCA_032528385.1_PDT001816294.1_genomic.fna	Salmonella_enterica	0.5215	382.65 KB	5	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNPEQ010000001.1 Salmonella enterica subsp. enterica serovar Kiambu strain FSIS12323394 SAMN36416744-rid18784373.denovo.01, whole genome shotgun sequence	261576..262013	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNPEQ010000035.1 Salmonella enterica subsp. enterica serovar Kiambu strain FSIS12323394 SAMN36416744-rid18784373.guided.13, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032528405.1_PDT001816291.1_genomic.fna	Salmonella_enterica	0.5194	159.01 KB	11	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNPER010000004.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323387 SAMN36416732-rid18784343.denovo.04, whole genome shotgun sequence	230360..230797	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNPER010000078.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323387 SAMN36416732-rid18784343.guided.38, whole genome shotgun sequence	24853..25290	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNPER010000051.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323387 SAMN36416732-rid18784343.denovo.54, whole genome shotgun sequence	3134..3264	enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNPER010000053.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323387 SAMN36416732-rid18784343.denovo.56, whole genome shotgun sequence	2209..2339		enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNPER010000054.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323387 SAMN36416732-rid18784343.denovo.57, whole genome shotgun sequence	557..687		enterobacteriales	Col156	94.81	154 / 154	ABNPER010000055.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323387 SAMN36416732-rid18784343.denovo.58, whole genome shotgun sequence	792..945																																		avrA	ABNPER010000016.1	119051..119920	99.54	870	0						
GCA_032528425.1_PDT001816289.1_genomic.fna	Salmonella_enterica	0.5206	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	10	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPEU010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.denovo.01, whole genome shotgun sequence	573245..573682	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPEU010000025.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.denovo.27, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPEU010000025.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.denovo.27, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNPEU010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.denovo.50, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPEU010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.denovo.50, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNPEU010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.denovo.60, whole genome shotgun sequence	92..907	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	aac(6')-Iaa	97.49	438/438	ABNPEU010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.guided.24, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPEU010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.guided.26, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPEU010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.guided.26, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNPEU010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.guided.49, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPEU010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.guided.49, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNPEU010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.guided.58, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	blaCTX-M-65	100	876/876	ABNPEU010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.denovo.51, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNPEU010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.guided.55, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNPEU010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.denovo.45, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNPEU010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.guided.44, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNPEU010000025.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.denovo.27, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPEU010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.guided.26, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPEU010000025.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.denovo.27, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPEU010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.guided.26, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNPEU010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.denovo.42, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNPEU010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.guided.46, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPEU010000030.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.denovo.32, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX1	98.66	374 / 374	ABNPEU010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323389 SAMN36416734-rid18784333.denovo.29, whole genome shotgun sequence	10524..10897																																																avrA	ABNPEU010000002.1	95321..96190	99.655	870	0						
GCA_032528445.1_PDT001816288.1_genomic.fna	Salmonella_enterica	0.5224	193.617 KB	7	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPEV010000001.1 Salmonella enterica subsp. enterica serovar London strain FSIS12323388 SAMN36416733-rid18784323.denovo.01, whole genome shotgun sequence	378842..379279	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPEV010000042.1 Salmonella enterica subsp. enterica serovar London strain FSIS12323388 SAMN36416733-rid18784323.guided.21, whole genome shotgun sequence	44304..44741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPEV010000012.1	36962..37831	99.425	870	0						
GCA_032528465.1_PDT001816290.1_genomic.fna	Salmonella_enterica	0.5208	301.674 KB	5	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNPET010000001.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323386 SAMN36416731-rid18783683.denovo.01, whole genome shotgun sequence	492283..492720	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPET010000025.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323386 SAMN36416731-rid18783683.denovo.30, whole genome shotgun sequence	5947..6783	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNPET010000025.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323386 SAMN36416731-rid18783683.denovo.30, whole genome shotgun sequence	4916..5729	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aph(3'')-Ib	100	804/804	ABNPET010000025.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323386 SAMN36416731-rid18783683.denovo.30, whole genome shotgun sequence	6783..7586	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNPET010000045.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323386 SAMN36416731-rid18783683.guided.26, whole genome shotgun sequence	14784..15221	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPET010000048.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323386 SAMN36416731-rid18783683.guided.29, whole genome shotgun sequence	4573..5409	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNPET010000048.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323386 SAMN36416731-rid18783683.guided.29, whole genome shotgun sequence	5627..6440	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aph(3'')-Ib	100	804/804	ABNPET010000048.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323386 SAMN36416731-rid18783683.guided.29, whole genome shotgun sequence	3770..4573	Streptomycin	AF321551	sul2	99.88	816/816	ABNPET010000005.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323386 SAMN36416731-rid18783683.denovo.05, whole genome shotgun sequence	297783..298598	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNPET010000046.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323386 SAMN36416731-rid18783683.guided.27, whole genome shotgun sequence	11790..12605	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNPET010000027.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323386 SAMN36416731-rid18783683.denovo.33, whole genome shotgun sequence	1196..2401	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPET010000049.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323386 SAMN36416731-rid18783683.guided.32, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPET010000011.1	147978..148846	99.655	869	0						
GCA_032528605.1_PDT001816281.1_genomic.fna	Salmonella_enterica	0.5199	72.8 KB	21	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPFC010000003.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323385 SAMN36416723-rid18784253.denovo.003, whole genome shotgun sequence	20236..20673	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPFC010000124.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323385 SAMN36416723-rid18784253.guided.071, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNPFC010000007.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323385 SAMN36416723-rid18784253.denovo.007, whole genome shotgun sequence	17981..18403	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNPFC010000125.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323385 SAMN36416723-rid18784253.guided.087, whole genome shotgun sequence	6642..7064	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNPFC010000095.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323385 SAMN36416723-rid18784253.denovo.099, whole genome shotgun sequence	3175..3285																																																						avrA	ABNPFC010000002.1	95971..96840	99.195	870	0						
GCA_032528645.1_PDT001816279.1_genomic.fna	Salmonella_enterica	0.5224	102.138 KB	16	aroC_5,dnaN_14,hemD_21,hisD_9,purE_6,sucA_12,thrA_17	49	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPFE010000002.1 Salmonella enterica subsp. enterica serovar Saintpaul strain FSIS12323384 SAMN36416702-rid18784243.denovo.02, whole genome shotgun sequence	38005..38442	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPFE010000093.1 Salmonella enterica subsp. enterica serovar Saintpaul strain FSIS12323384 SAMN36416702-rid18784243.guided.54, whole genome shotgun sequence	7316..7753	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNPFE010000013.1	114651..115520	99.54	870	0						
GCA_032528665.1_PDT001816277.1_genomic.fna	Salmonella_enterica	0.5218	133.596 KB	13	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNPFG010000006.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323379 SAMN36416697-rid18784223.denovo.06, whole genome shotgun sequence	98749..99186	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNPFG010000093.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323379 SAMN36416697-rid18784223.guided.64, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNPFG010000052.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323379 SAMN36416697-rid18784223.denovo.53, whole genome shotgun sequence	10065..10206																																																						avrA	ABNPFG010000004.1	130895..131764	99.54	870	0						
GCA_032528685.1_PDT001816278.1_genomic.fna	Salmonella_enterica	0.5213	115.419 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPFF010000025.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323381 SAMN36416699-rid18784233.denovo.25, whole genome shotgun sequence	20184..20621	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPFF010000074.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323381 SAMN36416699-rid18784233.guided.40, whole genome shotgun sequence	20586..21023	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPFF010000052.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323381 SAMN36416699-rid18784233.denovo.55, whole genome shotgun sequence	6822..7464	enterobacteriales	IncFII(S)	100	262 / 262	ABNPFF010000054.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323381 SAMN36416699-rid18784233.denovo.57, whole genome shotgun sequence	3392..3653																																																avrA	ABNPFF010000010.1	61531..62400	99.54	870	0						
GCA_032528705.1_PDT001816276.1_genomic.fna	Salmonella_enterica	0.5216	111.489 KB	15	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	1,3,19:e,h:1,6	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	1,3,19	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Hayindogo		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNPFH010000006.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323383 SAMN36416701-rid18784213.denovo.006, whole genome shotgun sequence	52295..52732	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNPFH010000103.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323383 SAMN36416701-rid18784213.guided.074, whole genome shotgun sequence	3871..4308	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNPFH010000050.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323383 SAMN36416701-rid18784213.denovo.050, whole genome shotgun sequence	690..1895	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPFH010000101.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323383 SAMN36416701-rid18784213.guided.066, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNPFH010000077.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323383 SAMN36416701-rid18784213.denovo.081, whole genome shotgun sequence	557..687	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPFH010000050.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323383 SAMN36416701-rid18784213.denovo.050, whole genome shotgun sequence	8281..8422		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPFH010000101.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323383 SAMN36416701-rid18784213.guided.066, whole genome shotgun sequence	3169..3310																																									avrA	ABNPFH010000009.1	132506..133375	99.54	870	0						
GCA_032528725.1_PDT001816274.1_genomic.fna	Salmonella_enterica	0.5218	80.82 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aadA1,aac(3)-VIa,sul2,sul1,sul1,sul2,tet(A),tet(C),tet(A),tet(C)	0		1	ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPFJ010000024.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323382 SAMN36416700-rid18784193.denovo.024, whole genome shotgun sequence	15510..15947	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNPFJ010000074.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323382 SAMN36416700-rid18784193.denovo.075, whole genome shotgun sequence	12506..13408	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNPFJ010000074.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323382 SAMN36416700-rid18784193.denovo.075, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNPFJ010000128.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323382 SAMN36416700-rid18784193.guided.061, whole genome shotgun sequence	15456..15893	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNPFJ010000133.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323382 SAMN36416700-rid18784193.guided.110, whole genome shotgun sequence	2402..3193	Spectinomycin, Streptomycin	JQ414041	aac(3)-VIa	100	903/903	ABNPFJ010000135.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323382 SAMN36416700-rid18784193.guided.121, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	sul2	100	816/816	ABNPFJ010000042.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323382 SAMN36416700-rid18784193.denovo.042, whole genome shotgun sequence	29128..29943	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNPFJ010000074.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323382 SAMN36416700-rid18784193.denovo.075, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul1	100	840/840	ABNPFJ010000131.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323382 SAMN36416700-rid18784193.guided.098, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	sul2	100	816/816	ABNPFJ010000132.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323382 SAMN36416700-rid18784193.guided.100, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNPFJ010000042.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323382 SAMN36416700-rid18784193.denovo.042, whole genome shotgun sequence	32120..33319	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNPFJ010000112.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323382 SAMN36416700-rid18784193.denovo.119, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABNPFJ010000132.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323382 SAMN36416700-rid18784193.guided.100, whole genome shotgun sequence	4544..5743	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNPFJ010000134.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323382 SAMN36416700-rid18784193.guided.116, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	ColpVC	98.96	193 / 193	ABNPFJ010000111.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323382 SAMN36416700-rid18784193.denovo.118, whole genome shotgun sequence	805..997																																																						avrA	ABNPFJ010000017.1	78646..79515	99.885	870	0						
GCA_032528745.1_PDT001816275.1_genomic.fna	Salmonella_enterica	0.5215	90.217 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,sul2,sul1,sul2,sul1,tet(A),tet(A)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPFI010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323380 SAMN36416698-rid18784203.denovo.001, whole genome shotgun sequence	83633..84070	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPFI010000106.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323380 SAMN36416698-rid18784203.guided.048, whole genome shotgun sequence	20584..21021	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNPFI010000028.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323380 SAMN36416698-rid18784203.denovo.028, whole genome shotgun sequence	12682..13497	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNPFI010000078.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323380 SAMN36416698-rid18784203.denovo.082, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul2	100	816/816	ABNPFI010000105.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323380 SAMN36416698-rid18784203.guided.036, whole genome shotgun sequence	45360..46175	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNPFI010000109.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323380 SAMN36416698-rid18784203.guided.083, whole genome shotgun sequence	4240..5079	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABNPFI010000028.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323380 SAMN36416698-rid18784203.denovo.028, whole genome shotgun sequence	9306..10505	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPFI010000105.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323380 SAMN36416698-rid18784203.guided.036, whole genome shotgun sequence	48352..49551	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNPFI010000084.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323380 SAMN36416698-rid18784203.denovo.089, whole genome shotgun sequence	371..501																																																						avrA	ABNPFI010000009.1	108251..109120	99.885	870	0						
GCA_032528765.1_PDT001816273.1_genomic.fna	Salmonella_enterica	0.5227	82.749 KB	20	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPFK010000013.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323376 SAMN36416684-rid18784183.denovo.013, whole genome shotgun sequence	38044..38481	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPFK010000099.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323376 SAMN36416684-rid18784183.guided.052, whole genome shotgun sequence	14720..15157	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPFK010000022.1	43535..44403	99.195	870	0						
GCA_032528785.1_PDT001816272.1_genomic.fna	Salmonella_enterica	0.5224	92.332 KB	15	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPFL010000005.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323375 SAMN36416687-rid18784173.denovo.05, whole genome shotgun sequence	79446..79883	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPFL010000090.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323375 SAMN36416687-rid18784173.guided.59, whole genome shotgun sequence	14307..14744	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPFL010000011.1	98785..99653	99.195	870	0						
GCA_032528805.1_PDT001816271.1_genomic.fna	Salmonella_enterica	0.5224	115.743 KB	13	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPFM010000001.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323377 SAMN36416685-rid18784163.denovo.01, whole genome shotgun sequence	224841..225278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPFM010000090.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323377 SAMN36416685-rid18784163.guided.44, whole genome shotgun sequence	16071..16508	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPFM010000005.1	150388..151256	99.195	870	0						
GCA_032528825.1_PDT001816270.1_genomic.fna	Salmonella_enterica	0.5221	201.159 KB	8	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPFN010000004.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323378 SAMN36416686-rid18783663.denovo.04, whole genome shotgun sequence	52314..52751	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPFN010000053.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323378 SAMN36416686-rid18783663.guided.28, whole genome shotgun sequence	24367..24804	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPFN010000009.1	150318..151186	99.195	870	0						
GCA_032529285.1_PDT001816212.1_genomic.fna	Salmonella_enterica	0.5212	774.016 KB	2	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	7	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-55,blaTEM-214,blaTEM-209,blaTEM-206,blaTEM-141,blaTEM-1B,blaCTX-M-55,blaTEM-214,blaTEM-206,blaTEM-141,blaTEM-1B	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPFP010000001.1 Salmonella enterica strain PNUSAS362565 SAMN36416645-rid18782913.denovo.01, whole genome shotgun sequence	1329303..1329740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPFP010000019.1 Salmonella enterica strain PNUSAS362565 SAMN36416645-rid18782913.guided.11, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	blaCTX-M-55	100	876/876	ABNPFP010000010.1 Salmonella enterica strain PNUSAS362565 SAMN36416645-rid18782913.denovo.13, whole genome shotgun sequence	42156..43031	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-214	100	740/861	ABNPFP010000010.1 Salmonella enterica strain PNUSAS362565 SAMN36416645-rid18782913.denovo.13, whole genome shotgun sequence	43813..44552	Unknown Beta-lactam	KP050491	blaTEM-209	100	740/861	ABNPFP010000010.1 Salmonella enterica strain PNUSAS362565 SAMN36416645-rid18782913.denovo.13, whole genome shotgun sequence	43813..44552	Unknown Beta-lactam	KF240808	blaTEM-206	100	740/861	ABNPFP010000010.1 Salmonella enterica strain PNUSAS362565 SAMN36416645-rid18782913.denovo.13, whole genome shotgun sequence	43813..44552	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	100	740/861	ABNPFP010000010.1 Salmonella enterica strain PNUSAS362565 SAMN36416645-rid18782913.denovo.13, whole genome shotgun sequence	43813..44552	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	100	740/861	ABNPFP010000010.1 Salmonella enterica strain PNUSAS362565 SAMN36416645-rid18782913.denovo.13, whole genome shotgun sequence	43813..44552	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNPFP010000020.1 Salmonella enterica strain PNUSAS362565 SAMN36416645-rid18782913.guided.18, whole genome shotgun sequence	408..1283	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-214	99.87	746/861	ABNPFP010000020.1 Salmonella enterica strain PNUSAS362565 SAMN36416645-rid18782913.guided.18, whole genome shotgun sequence	2065..2810	Unknown Beta-lactam	KP050491	blaTEM-206	99.87	746/861	ABNPFP010000020.1 Salmonella enterica strain PNUSAS362565 SAMN36416645-rid18782913.guided.18, whole genome shotgun sequence	2065..2810	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	99.87	746/861	ABNPFP010000020.1 Salmonella enterica strain PNUSAS362565 SAMN36416645-rid18782913.guided.18, whole genome shotgun sequence	2065..2810	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	99.87	746/861	ABNPFP010000020.1 Salmonella enterica strain PNUSAS362565 SAMN36416645-rid18782913.guided.18, whole genome shotgun sequence	2065..2810	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																													gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	ABNPFP010000003.1	145207..146076	99.31	870	0						
GCA_032529305.1_PDT001816211.1_genomic.fna	Salmonella_enterica	0.5224	93.424 KB	14	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPFO010000001.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323372 SAMN36416672-rid18782903.denovo.01, whole genome shotgun sequence	477448..477885	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPFO010000072.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323372 SAMN36416672-rid18782903.guided.40, whole genome shotgun sequence	40058..40495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPFO010000008.1	94857..95725	99.195	870	0						
GCA_032529325.1_PDT001816208.1_genomic.fna	Salmonella_enterica	0.522	118.228 KB	16	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	10	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPFR010000029.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.denovo.029, whole genome shotgun sequence	12566..13003	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPFR010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.denovo.050, whole genome shotgun sequence	22886..23677	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPFR010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.denovo.050, whole genome shotgun sequence	22886..23677	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNPFR010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.denovo.079, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPFR010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.denovo.079, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNPFR010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.denovo.109, whole genome shotgun sequence	93..908	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aac(6')-Iaa	97.49	438/438	ABNPFR010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.guided.055, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPFR010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.guided.074, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPFR010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.guided.074, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNPFR010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.guided.084, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPFR010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.guided.084, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNPFR010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.guided.107, whole genome shotgun sequence	127..942	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	blaCTX-M-65	100	876/876	ABNPFR010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.denovo.088, whole genome shotgun sequence	933..1808	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNPFR010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.guided.087, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNPFR010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.denovo.081, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNPFR010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.guided.080, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNPFR010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.denovo.050, whole genome shotgun sequence	21542..22381	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPFR010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.guided.074, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPFR010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.denovo.050, whole genome shotgun sequence	7826..9025	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPFR010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.guided.070, whole genome shotgun sequence	8203..9402	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNPFR010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.denovo.094, whole genome shotgun sequence	99..572	Trimethoprim	AF393510	dfrA14	100	474/474	ABNPFR010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.guided.099, whole genome shotgun sequence	96..569	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPFR010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323367 SAMN36416651-rid18783563.denovo.035, whole genome shotgun sequence	37011..37570																																																						avrA	ABNPFR010000023.1	39538..40407	99.655	870	0						
GCA_032529425.1_PDT001816210.1_genomic.fna	Salmonella_enterica	0.5224	96.606 KB	13	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPFQ010000001.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323373 SAMN36416671-rid18783573.denovo.01, whole genome shotgun sequence	374365..374802	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPFQ010000076.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323373 SAMN36416671-rid18783573.guided.59, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPFQ010000011.1	61400..62268	99.195	870	0						
GCA_032529445.1_PDT001816209.1_genomic.fna	Salmonella_enterica	0.521	478.749 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPFS010000001.1 Salmonella enterica strain PNUSAS362163 SAMN36416647-rid18782893.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPFS010000023.1 Salmonella enterica strain PNUSAS362163 SAMN36416647-rid18782893.guided.16, whole genome shotgun sequence	31954..32391	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPFS010000014.1 Salmonella enterica strain PNUSAS362163 SAMN36416647-rid18782893.denovo.15, whole genome shotgun sequence	40541..41183	enterobacteriales	IncFII(S)	100	262 / 262	ABNPFS010000017.1 Salmonella enterica strain PNUSAS362163 SAMN36416647-rid18782893.denovo.20, whole genome shotgun sequence	3415..3676																																																avrA	ABNPFS010000002.1	175196..176065	99.54	870	0						
GCA_032529465.1_PDT001816207.1_genomic.fna	Salmonella_enterica	0.5219	85.327 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPFT010000002.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323368 SAMN36416652-rid18782883.denovo.002, whole genome shotgun sequence	175678..176115	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNPFT010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323368 SAMN36416652-rid18782883.guided.033, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPFT010000030.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323368 SAMN36416652-rid18782883.denovo.030, whole genome shotgun sequence	57258..57817																																																						avrA	ABNPFT010000003.1	105431..106300	99.655	870	0						
GCA_032529485.1_PDT001816206.1_genomic.fna	Salmonella_enterica	0.5221	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPFU010000001.1 Salmonella enterica strain PNUSAS362153 SAMN36416643-rid18782873.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPFU010000027.1 Salmonella enterica strain PNUSAS362153 SAMN36416643-rid18782873.guided.15, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNPFU010000018.1 Salmonella enterica strain PNUSAS362153 SAMN36416643-rid18782873.denovo.21, whole genome shotgun sequence	3981..4111																																																						avrA	ABNPFU010000002.1	93999..94868	98.966	870	0						
GCA_032529505.1_PDT001816205.1_genomic.fna	Salmonella_enterica	0.5199	579.752 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPFV010000006.1 Salmonella enterica strain PNUSAS362167 SAMN36416650-rid18782863.denovo.06, whole genome shotgun sequence	77870..78307	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPFV010000049.1 Salmonella enterica strain PNUSAS362167 SAMN36416650-rid18782863.guided.16, whole genome shotgun sequence	27798..28235	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPFV010000001.1	191139..192008	99.425	870	0						
GCA_032529525.1_PDT001816204.1_genomic.fna	Salmonella_enterica	0.5204	467.555 KB	4	aroC_111,dnaN_47,hemD_49,hisD_16,purE_41,sucA_15,thrA_4	306	4:l,v:1,7	4	aac(6')-Iaa,aadA5,aac(6')-Iaa,aadA5,sul1,sul1,sul1,dfrA17,dfrA17	1	parC_p.T57S	2	ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_4	4	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Bredeney		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPFW010000002.1 Salmonella enterica strain PNUSAS362165 SAMN36416642-rid18782853.denovo.02, whole genome shotgun sequence	401824..402261	Amikacin, Tobramycin	NC_003197	aadA5	100	789/789	ABNPFW010000015.1 Salmonella enterica strain PNUSAS362165 SAMN36416642-rid18782853.denovo.16, whole genome shotgun sequence	59458..60246	Spectinomycin, Streptomycin	AF137361	aac(6')-Iaa	97.95	438/438	ABNPFW010000037.1 Salmonella enterica strain PNUSAS362165 SAMN36416642-rid18782853.guided.23, whole genome shotgun sequence	4439..4876	Amikacin, Tobramycin	NC_003197	aadA5	100	789/789	ABNPFW010000038.1 Salmonella enterica strain PNUSAS362165 SAMN36416642-rid18782853.guided.26, whole genome shotgun sequence	1074..1862	Spectinomycin, Streptomycin	AF137361	sul1	100	840/840	ABNPFW010000015.1 Salmonella enterica strain PNUSAS362165 SAMN36416642-rid18782853.denovo.16, whole genome shotgun sequence	58072..58911	Sulfamethoxazole	U12338	sul1	99.88	840/840	ABNPFW010000039.1 Salmonella enterica strain PNUSAS362165 SAMN36416642-rid18782853.guided.27, whole genome shotgun sequence	91..930	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPFW010000040.1 Salmonella enterica strain PNUSAS362165 SAMN36416642-rid18782853.guided.28, whole genome shotgun sequence	91..930	Sulfamethoxazole	U12338	dfrA17	100	474/474	ABNPFW010000015.1 Salmonella enterica strain PNUSAS362165 SAMN36416642-rid18782853.denovo.16, whole genome shotgun sequence	60377..60850	Trimethoprim	FJ460238	dfrA17	100	474/474	ABNPFW010000038.1 Salmonella enterica strain PNUSAS362165 SAMN36416642-rid18782853.guided.26, whole genome shotgun sequence	470..943	Trimethoprim	FJ460238																																																																																																																																																																																																																																																																																																																																																																																																									parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	96.89	193 / 193	ABNPFW010000023.1 Salmonella enterica strain PNUSAS362165 SAMN36416642-rid18782853.denovo.29, whole genome shotgun sequence	474..666	enterobacteriales	IncI1-I(Alpha)	96.4	139 / 142	ABNPFW010000014.1 Salmonella enterica strain PNUSAS362165 SAMN36416642-rid18782853.denovo.15, whole genome shotgun sequence	24025..24162																																																avrA	ABNPFW010000003.1	404292..405161	98.966	870	0						
GCA_032529545.1_PDT001816203.1_genomic.fna	Salmonella_enterica	0.5226	134.324 KB	12	aroC_5,dnaN_14,hemD_21,hisD_9,purE_6,sucA_12,thrA_17	49	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPFX010000001.1 Salmonella enterica subsp. enterica serovar Saintpaul strain FSIS12323371 SAMN36416644-rid18783553.denovo.01, whole genome shotgun sequence	284357..284794	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPFX010000068.1 Salmonella enterica subsp. enterica serovar Saintpaul strain FSIS12323371 SAMN36416644-rid18783553.guided.50, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNPFX010000004.1	114667..115536	99.54	870	0						
GCA_032529565.1_PDT001816201.1_genomic.fna	Salmonella_enterica	0.522	92.226 KB	17	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	-:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	-	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:l,z13:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNPGA010000024.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323369 SAMN36416646-rid18782833.denovo.024, whole genome shotgun sequence	20915..21352	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPGA010000072.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323369 SAMN36416646-rid18782833.denovo.076, whole genome shotgun sequence	5947..6783	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNPGA010000072.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323369 SAMN36416646-rid18782833.denovo.076, whole genome shotgun sequence	4916..5729	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	V00359	aph(3'')-Ib	100	804/804	ABNPGA010000072.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323369 SAMN36416646-rid18782833.denovo.076, whole genome shotgun sequence	6783..7586	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNPGA010000103.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323369 SAMN36416646-rid18782833.guided.057, whole genome shotgun sequence	8046..8483	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPGA010000106.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323369 SAMN36416646-rid18782833.guided.075, whole genome shotgun sequence	4573..5409	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNPGA010000106.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323369 SAMN36416646-rid18782833.guided.075, whole genome shotgun sequence	5627..6440	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	V00359	aph(3'')-Ib	100	804/804	ABNPGA010000106.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323369 SAMN36416646-rid18782833.guided.075, whole genome shotgun sequence	3770..4573	Streptomycin	AF321551	sul2	99.88	816/816	ABNPGA010000035.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323369 SAMN36416646-rid18782833.denovo.035, whole genome shotgun sequence	3077..3892	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNPGA010000105.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323369 SAMN36416646-rid18782833.guided.073, whole genome shotgun sequence	11790..12605	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNPGA010000074.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323369 SAMN36416646-rid18782833.denovo.080, whole genome shotgun sequence	1194..2399	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPGA010000108.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323369 SAMN36416646-rid18782833.guided.079, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNPGA010000079.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323369 SAMN36416646-rid18782833.denovo.085, whole genome shotgun sequence	557..687																																																						avrA	ABNPGA010000011.1	102985..103853	99.655	869	0						
GCA_032529585.1_PDT001816202.1_genomic.fna	Salmonella_enterica	0.5225	387.908 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNPFY010000001.1 Salmonella enterica strain PNUSAS362156 SAMN36416648-rid18782843.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNPFY010000039.1 Salmonella enterica strain PNUSAS362156 SAMN36416648-rid18782843.guided.26, whole genome shotgun sequence	31..468	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNPFY010000025.1 Salmonella enterica strain PNUSAS362156 SAMN36416648-rid18782843.denovo.28, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNPFY010000027.1 Salmonella enterica strain PNUSAS362156 SAMN36416648-rid18782843.denovo.30, whole genome shotgun sequence	2528..2639																																																avrA	ABNPFY010000006.1	174277..175145	99.425	870	0						
GCA_032529605.1_PDT001816199.1_genomic.fna	Salmonella_enterica	0.518	257.298 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	16	aac(6')-Iaa,aac(3)-IId,aadA22,aph(3')-Ia,aac(6')-Iaa,aac(3)-IId,aadA22,aph(3')-Ia,blaCTX-M-55,blaTEM-1B,blaLAP-2,blaTEM-1B,blaLAP-2,blaCTX-M-55,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul3,tet(B),tet(A),tet(B),tet(A),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPGB010000001.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNPGB010000046.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.55, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNPGB010000050.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.62, whole genome shotgun sequence	944..1735	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABNPGB010000054.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.69, whole genome shotgun sequence	239..1054	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EF015636	aac(6')-Iaa	100	438/438	ABNPGB010000067.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.guided.12, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNPGB010000076.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.guided.56, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNPGB010000079.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.guided.64, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABNPGB010000081.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.guided.68, whole genome shotgun sequence	163..978	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EF015636	blaCTX-M-55	100	876/876	ABNPGB010000034.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.37, whole genome shotgun sequence	3229..4104	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNPGB010000034.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.37, whole genome shotgun sequence	6926..7786	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNPGB010000034.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.37, whole genome shotgun sequence	9990..10847	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNPGB010000071.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.guided.40, whole genome shotgun sequence	2635..3495	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNPGB010000071.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.guided.40, whole genome shotgun sequence	5699..6556	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaCTX-M-55	100	876/876	ABNPGB010000073.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.guided.49, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	mph(A)	100	906/906	ABNPGB010000047.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.58, whole genome shotgun sequence	2576..3481	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNPGB010000050.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.62, whole genome shotgun sequence	1867..2688	Lincomycin	EU118119	mph(A)	100	906/906	ABNPGB010000077.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.guided.57, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNPGB010000079.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.guided.64, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABNPGB010000036.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.41, whole genome shotgun sequence	876..2089	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNPGB010000074.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.guided.51, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNPGB010000042.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.48, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNPGB010000072.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.guided.47, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNPGB010000051.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.63, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNPGB010000080.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.guided.65, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNPGB010000033.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.36, whole genome shotgun sequence	13387..14178	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNPGB010000078.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.guided.61, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNPGB010000031.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.34, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNPGB010000045.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.54, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNPGB010000070.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.guided.39, whole genome shotgun sequence	5245..6450	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNPGB010000075.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.guided.52, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNPGB010000051.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.63, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNPGB010000080.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.guided.65, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																																																												enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNPGB010000043.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.50, whole genome shotgun sequence	1939..2067	enterobacteriales	IncHI2	100	327 / 327	ABNPGB010000019.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.20, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNPGB010000014.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.15, whole genome shotgun sequence	11023..11652		enterobacteriales	IncN	100	513 / 514	ABNPGB010000056.1 Salmonella enterica strain PNUSAS362557 SAMN36416605-rid18782823.denovo.71, whole genome shotgun sequence	470..982																																		avrA	ABNPGB010000002.1	540741..541610	99.885	870	0						
GCA_032529625.1_PDT001816200.1_genomic.fna	Salmonella_enterica	0.5198	121.364 KB	13	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	14	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-VIa,aadA1,rmtE,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,rmtE,aac(3)-VIa,aph(3')-Ia,aph(3')-Ia,blaCMY-2,blaCMY-2,fosA7,fosA7,floR,floR,sul2,sul1,sul2,sul1,tet(A),tet(A),tet(A),dfrA34,dfrA34	2	gyrA_p.S83Y,parC_p.T57S	1	IncC	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPFZ010000001.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.denovo.001, whole genome shotgun sequence	486123..486560	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPFZ010000023.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.denovo.023, whole genome shotgun sequence	67538..68374	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPFZ010000023.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.denovo.023, whole genome shotgun sequence	66735..67538	Streptomycin	AF321551	aac(3)-VIa	100	903/903	ABNPFZ010000071.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.denovo.076, whole genome shotgun sequence	19..921	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	90.67	772/792	ABNPFZ010000074.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.denovo.080, whole genome shotgun sequence	3..774	Spectinomycin, Streptomycin	FJ591054	rmtE	100	822/822	ABNPFZ010000080.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.denovo.087, whole genome shotgun sequence	1889..2710	Amikacin, Gentamicin, Tobramycin, Kanamycin, Streptomycin	GU201947	aac(6')-Iaa	97.95	438/438	ABNPFZ010000110.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.guided.029, whole genome shotgun sequence	20547..20984	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPFZ010000111.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.guided.032, whole genome shotgun sequence	321..1157	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPFZ010000111.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.guided.032, whole genome shotgun sequence	1157..1960	Streptomycin	AF321551	aadA1	90.67	772/792	ABNPFZ010000115.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.guided.079, whole genome shotgun sequence	4988..5759	Spectinomycin, Streptomycin	FJ591054	rmtE	100	822/822	ABNPFZ010000116.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.guided.086, whole genome shotgun sequence	1737..2558	Amikacin, Gentamicin, Tobramycin, Kanamycin, Streptomycin	GU201947	aac(3)-VIa	100	903/903	ABNPFZ010000119.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.guided.091, whole genome shotgun sequence	60..962	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aph(3')-Ia	100	816/816	ABNPFZ010000122.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.guided.103, whole genome shotgun sequence	4..819	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EU722351	aph(3')-Ia	100	816/816	ABNPFZ010000124.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.guided.111, whole genome shotgun sequence	4..819	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	V00359	blaCMY-2	100	1146/1146	ABNPFZ010000023.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.denovo.023, whole genome shotgun sequence	36373..37518	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNPFZ010000111.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.guided.032, whole genome shotgun sequence	31177..32322	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	fosA7	97.16	423/423	ABNPFZ010000005.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.denovo.005, whole genome shotgun sequence	17993..18415	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNPFZ010000113.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.guided.061, whole genome shotgun sequence	16606..17028	Fosfomycin	LAPJ01000014	floR	98.27	1214/1215	ABNPFZ010000073.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.denovo.078, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNPFZ010000118.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.guided.090, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNPFZ010000023.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.denovo.023, whole genome shotgun sequence	65859..66674	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNPFZ010000093.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.denovo.107, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul2	100	816/816	ABNPFZ010000111.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.guided.032, whole genome shotgun sequence	2021..2836	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNPFZ010000123.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.guided.106, whole genome shotgun sequence	401..1240	Sulfamethoxazole	U12338	tet(A)	100	1226/1275	ABNPFZ010000091.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.denovo.104, whole genome shotgun sequence	1..1226	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	ABNPFZ010000120.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.guided.095, whole genome shotgun sequence	418..1617	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABNPFZ010000121.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.guided.102, whole genome shotgun sequence	343..1617	Doxycycline, Tetracycline	AF534183	dfrA34	100	588/588	ABNPFZ010000081.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.denovo.089, whole genome shotgun sequence	1470..2057	Trimethoprim	JYRF01000065	dfrA34	100	588/588	ABNPFZ010000117.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.guided.088, whole genome shotgun sequence	1511..2098	Trimethoprim	JYRF01000065																																																																																																																																																																																																																																																													gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncC	100	417 / 417	ABNPFZ010000030.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323370 SAMN36416649-rid18783543.denovo.031, whole genome shotgun sequence	17489..17905																																																						avrA	ABNPFZ010000006.1	95956..96825	99.195	870	0						
GCA_032529645.1_PDT001816197.1_genomic.fna	Salmonella_enterica	0.52	135.705 KB	10	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPGD010000011.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323366 SAMN36416619-rid18782813.denovo.11, whole genome shotgun sequence	80725..81162	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPGD010000072.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323366 SAMN36416619-rid18782813.guided.40, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNPGD010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323366 SAMN36416619-rid18782813.denovo.12, whole genome shotgun sequence	70294..70435	enterobacteriales	IncX1	100	373 / 373	ABNPGD010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323366 SAMN36416619-rid18782813.denovo.53, whole genome shotgun sequence	2153..2525																																																avrA	ABNPGD010000028.1	39592..40461	99.655	870	0						
GCA_032529655.1_PDT001816198.1_genomic.fna	Salmonella_enterica	0.5213	268.207 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPGC010000003.1 Salmonella enterica strain PNUSAS362545 SAMN36416599-rid18783533.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPGC010000043.1 Salmonella enterica strain PNUSAS362545 SAMN36416599-rid18783533.guided.17, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPGC010000017.1 Salmonella enterica strain PNUSAS362545 SAMN36416599-rid18783533.denovo.18, whole genome shotgun sequence	48466..49108	enterobacteriales	IncFII(S)	100	262 / 262	ABNPGC010000017.1 Salmonella enterica strain PNUSAS362545 SAMN36416599-rid18783533.denovo.18, whole genome shotgun sequence	64193..64454																																																avrA	ABNPGC010000007.1	94133..95001	100	869	0						
GCA_032529685.1_PDT001816196.1_genomic.fna	Salmonella_enterica	0.5199	73.304 KB	24	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPGE010000027.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323363 SAMN36416616-rid18782803.denovo.027, whole genome shotgun sequence	12530..12967	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPGE010000068.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323363 SAMN36416616-rid18782803.denovo.069, whole genome shotgun sequence	16692..17528	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPGE010000068.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323363 SAMN36416616-rid18782803.denovo.069, whole genome shotgun sequence	17528..18331	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNPGE010000153.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323363 SAMN36416616-rid18782803.guided.060, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPGE010000156.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323363 SAMN36416616-rid18782803.guided.103, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPGE010000156.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323363 SAMN36416616-rid18782803.guided.103, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNPGE010000110.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323363 SAMN36416616-rid18782803.denovo.115, whole genome shotgun sequence	2286..3491	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPGE010000157.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323363 SAMN36416616-rid18782803.guided.113, whole genome shotgun sequence	2317..3522	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNPGE010000109.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323363 SAMN36416616-rid18782803.denovo.114, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNPGE010000068.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323363 SAMN36416616-rid18782803.denovo.069, whole genome shotgun sequence	15808..16069		enterobacteriales	IncFII	96.95	262 / 261	ABNPGE010000156.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323363 SAMN36416616-rid18782803.guided.103, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNPGE010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323363 SAMN36416616-rid18782803.denovo.101, whole genome shotgun sequence	4541..4682		enterobacteriales	IncX1	100	373 / 373	ABNPGE010000112.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323363 SAMN36416616-rid18782803.denovo.117, whole genome shotgun sequence	2153..2525																											avrA	ABNPGE010000041.1	39484..40353	99.655	870	0						
GCA_032529705.1_PDT001816195.1_genomic.fna	Salmonella_enterica	0.5215	129.965 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPGF010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.denovo.01, whole genome shotgun sequence	477772..478209	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPGF010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.denovo.43, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPGF010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.denovo.43, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNPGF010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.denovo.63, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPGF010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.denovo.63, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNPGF010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.denovo.86, whole genome shotgun sequence	93..908	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	X62115	aac(6')-Iaa	97.49	438/438	ABNPGF010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.guided.28, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPGF010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.guided.52, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPGF010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.guided.52, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNPGF010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.guided.67, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPGF010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.guided.67, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNPGF010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.guided.85, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	X62115	blaCTX-M-65	100	876/876	ABNPGF010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.denovo.70, whole genome shotgun sequence	901..1776	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNPGF010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.guided.69, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNPGF010000057.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.denovo.62, whole genome shotgun sequence	3189..4402	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNPGF010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.guided.64, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNPGF010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.denovo.43, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPGF010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.guided.52, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPGF010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.denovo.43, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPGF010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.guided.46, whole genome shotgun sequence	2743..3942	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPGF010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323362 SAMN36416615-rid18783523.denovo.38, whole genome shotgun sequence	29890..30449																																																						avrA	ABNPGF010000012.1	93814..94683	99.655	870	0						
GCA_032529745.1_PDT001816194.1_genomic.fna	Salmonella_enterica	0.5213	376.653 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPGH010000004.1 Salmonella enterica strain PNUSAS362546 SAMN36416597-rid18782793.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPGH010000037.1 Salmonella enterica strain PNUSAS362546 SAMN36416597-rid18782793.guided.15, whole genome shotgun sequence	34051..34488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPGH010000015.1 Salmonella enterica strain PNUSAS362546 SAMN36416597-rid18782793.denovo.16, whole genome shotgun sequence	48415..49057	enterobacteriales	IncFII(S)	100	262 / 262	ABNPGH010000015.1 Salmonella enterica strain PNUSAS362546 SAMN36416597-rid18782793.denovo.16, whole genome shotgun sequence	64142..64403																																																avrA	ABNPGH010000005.1	209578..210446	100	869	0						
GCA_032529765.1_PDT001816190.1_genomic.fna	Salmonella_enterica	0.5199	396.964 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPGM010000011.1 Salmonella enterica strain PNUSAS362551 SAMN36416602-rid18783503.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPGM010000038.1 Salmonella enterica strain PNUSAS362551 SAMN36416602-rid18783503.guided.16, whole genome shotgun sequence	42435..42872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNPGM010000018.1 Salmonella enterica strain PNUSAS362551 SAMN36416602-rid18783503.denovo.19, whole genome shotgun sequence	34957..35490																																																						avrA	ABNPGM010000002.1	124868..125734	98.966	870	0						
GCA_032529785.1_PDT001816191.1_genomic.fna	Salmonella_enterica	0.5214	152.104 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPGJ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323365 SAMN36416618-rid18782773.denovo.01, whole genome shotgun sequence	382107..382544	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNPGJ010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323365 SAMN36416618-rid18782773.denovo.72, whole genome shotgun sequence	1053..2078	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPGJ010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323365 SAMN36416618-rid18782773.denovo.72, whole genome shotgun sequence	48..824	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNPGJ010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323365 SAMN36416618-rid18782773.guided.49, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNPGJ010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323365 SAMN36416618-rid18782773.guided.71, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPGJ010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323365 SAMN36416618-rid18782773.guided.71, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNPGJ010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323365 SAMN36416618-rid18782773.denovo.65, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNPGJ010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323365 SAMN36416618-rid18782773.guided.67, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	dfrA14	100	474/474	ABNPGJ010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323365 SAMN36416618-rid18782773.denovo.63, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNPGJ010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323365 SAMN36416618-rid18782773.guided.66, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPGJ010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323365 SAMN36416618-rid18782773.denovo.46, whole genome shotgun sequence	14638..15197																																																						avrA	ABNPGJ010000003.1	124298..125167	99.655	870	0						
GCA_032529805.1_PDT001816189.1_genomic.fna	Salmonella_enterica	0.5218	218.675 KB	8	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNPGK010000008.1 Salmonella enterica strain PNUSAS362549 SAMN36416608-rid18782763.denovo.08, whole genome shotgun sequence	202631..203068	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNPGK010000048.1 Salmonella enterica strain PNUSAS362549 SAMN36416608-rid18782763.guided.32, whole genome shotgun sequence	16453..16890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNPGK010000039.1 Salmonella enterica strain PNUSAS362549 SAMN36416608-rid18782763.denovo.42, whole genome shotgun sequence	1703..1833	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPGK010000025.1 Salmonella enterica strain PNUSAS362549 SAMN36416608-rid18782763.denovo.26, whole genome shotgun sequence	8691..8832																																																avrA	ABNPGK010000009.1	145454..146323	99.425	870	0						
GCA_032529825.1_PDT001816192.1_genomic.fna	Salmonella_enterica	0.5218	93.429 KB	17	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPGI010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323364 SAMN36416617-rid18782783.denovo.001, whole genome shotgun sequence	16084..16521	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPGI010000108.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323364 SAMN36416617-rid18782783.guided.036, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPGI010000063.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323364 SAMN36416617-rid18782783.denovo.065, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNPGI010000073.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323364 SAMN36416617-rid18782783.denovo.076, whole genome shotgun sequence	3402..3663																																																avrA	ABNPGI010000009.1	43623..44492	99.54	870	0						
GCA_032529845.1_PDT001816188.1_genomic.fna	Salmonella_enterica	0.5209	490.178 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPGL010000001.1 Salmonella enterica strain PNUSAS362550 SAMN36416598-rid18783493.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPGL010000022.1 Salmonella enterica strain PNUSAS362550 SAMN36416598-rid18783493.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPGL010000012.1 Salmonella enterica strain PNUSAS362550 SAMN36416598-rid18783493.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNPGL010000015.1 Salmonella enterica strain PNUSAS362550 SAMN36416598-rid18783493.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABNPGL010000002.1	585342..586211	99.54	870	0						
GCA_032529865.1_PDT001816186.1_genomic.fna	Salmonella_enterica	0.5211	278.344 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPGQ010000001.1 Salmonella enterica strain PNUSAS362554 SAMN36416596-rid18782743.denovo.01, whole genome shotgun sequence	591136..591573	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPGQ010000032.1 Salmonella enterica strain PNUSAS362554 SAMN36416596-rid18782743.denovo.36, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPGQ010000032.1 Salmonella enterica strain PNUSAS362554 SAMN36416596-rid18782743.denovo.36, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNPGQ010000048.1 Salmonella enterica strain PNUSAS362554 SAMN36416596-rid18782743.guided.24, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPGQ010000050.1 Salmonella enterica strain PNUSAS362554 SAMN36416596-rid18782743.guided.35, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPGQ010000050.1 Salmonella enterica strain PNUSAS362554 SAMN36416596-rid18782743.guided.35, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNPGQ010000035.1 Salmonella enterica strain PNUSAS362554 SAMN36416596-rid18782743.denovo.41, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNPGQ010000052.1 Salmonella enterica strain PNUSAS362554 SAMN36416596-rid18782743.guided.40, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNPGQ010000032.1 Salmonella enterica strain PNUSAS362554 SAMN36416596-rid18782743.denovo.36, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNPGQ010000050.1 Salmonella enterica strain PNUSAS362554 SAMN36416596-rid18782743.guided.35, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNPGQ010000028.1 Salmonella enterica strain PNUSAS362554 SAMN36416596-rid18782743.denovo.31, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPGQ010000051.1 Salmonella enterica strain PNUSAS362554 SAMN36416596-rid18782743.guided.38, whole genome shotgun sequence	2287..3492	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNPGQ010000002.1	540741..541610	99.885	870	0						
GCA_032529885.1_PDT001816187.1_genomic.fna	Salmonella_enterica	0.5203	454.467 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPGN010000001.1 Salmonella enterica strain PNUSAS362555 SAMN36416603-rid18782753.denovo.01, whole genome shotgun sequence	565816..566253	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPGN010000064.1 Salmonella enterica strain PNUSAS362555 SAMN36416603-rid18782753.guided.11, whole genome shotgun sequence	44263..44700	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNPGN010000021.1 Salmonella enterica strain PNUSAS362555 SAMN36416603-rid18782753.denovo.23, whole genome shotgun sequence	11465..12107																																																						avrA	ABNPGN010000005.1	168890..169758	99.31	870	0						
GCA_032529905.1_PDT001816185.1_genomic.fna	Salmonella_enterica	0.5214	216.489 KB	8	aroC_36,dnaN_31,hemD_35,hisD_14,purE_26,sucA_6,thrA_8	145	7:c:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_36	dnaN	100	100	dnaN_31	hemD	100	100	hemD_35	hisD	100	100	hisD_14	purE	100	100	purE_26	sucA	100	100	sucA_6	thrA	100	100	thrA_8	7	c	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi C or Choleraesuis or Typhisuis	The predicted serotypes share the same general formula: 7:c:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPGP010000001.1 Salmonella enterica strain PNUSAS362548 SAMN36416607-rid18783483.denovo.01, whole genome shotgun sequence	283530..283967	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPGP010000049.1 Salmonella enterica strain PNUSAS362548 SAMN36416607-rid18783483.guided.29, whole genome shotgun sequence	23276..23713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNPGP010000022.1 Salmonella enterica strain PNUSAS362548 SAMN36416607-rid18783483.denovo.23, whole genome shotgun sequence	37341..37983	enterobacteriales	IncFII(S)	99.62	262 / 262	ABNPGP010000022.1 Salmonella enterica strain PNUSAS362548 SAMN36416607-rid18783483.denovo.23, whole genome shotgun sequence	45889..46150																																																											
GCA_032529925.1_PDT001816184.1_genomic.fna	Salmonella_enterica	0.5212	490.179 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPGO010000001.1 Salmonella enterica strain PNUSAS362552 SAMN36416601-rid18782733.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPGO010000026.1 Salmonella enterica strain PNUSAS362552 SAMN36416601-rid18782733.guided.16, whole genome shotgun sequence	5905..6342	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPGO010000013.1 Salmonella enterica strain PNUSAS362552 SAMN36416601-rid18782733.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNPGO010000016.1 Salmonella enterica strain PNUSAS362552 SAMN36416601-rid18782733.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABNPGO010000002.1	585462..586331	99.54	870	0						
GCA_032529945.1_PDT001816183.1_genomic.fna	Salmonella_enterica	0.52	508.314 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPGR010000001.1 Salmonella enterica strain PNUSAS362547 SAMN36416606-rid18783473.denovo.01, whole genome shotgun sequence	799036..799473	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPGR010000023.1 Salmonella enterica strain PNUSAS362547 SAMN36416606-rid18783473.guided.20, whole genome shotgun sequence	1463..1900	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNPGR010000012.1 Salmonella enterica strain PNUSAS362547 SAMN36416606-rid18783473.denovo.12, whole genome shotgun sequence	34944..35477	enterobacteriales	IncX1	98.66	374 / 374	ABNPGR010000016.1 Salmonella enterica strain PNUSAS362547 SAMN36416606-rid18783473.denovo.17, whole genome shotgun sequence	6956..7329																																																avrA	ABNPGR010000002.1	503602..504472	99.196	871	0						
GCA_032529965.1_PDT001816182.1_genomic.fna	Salmonella_enterica	0.5201	696.248 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPGS010000001.1 Salmonella enterica strain PNUSAS362556 SAMN36416604-rid18782723.denovo.01, whole genome shotgun sequence	644347..644784	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPGS010000018.1 Salmonella enterica strain PNUSAS362556 SAMN36416604-rid18782723.guided.08, whole genome shotgun sequence	10480..10917	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032529985.1_PDT001816181.1_genomic.fna	Salmonella_enterica	0.5209	465.75 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPGU010000001.1 Salmonella enterica strain PNUSAS362553 SAMN36416600-rid18782713.denovo.01, whole genome shotgun sequence	603404..603841	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPGU010000026.1 Salmonella enterica strain PNUSAS362553 SAMN36416600-rid18782713.guided.11, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPGU010000009.1	171487..172355	99.195	870	0						
GCA_032531805.1_PDT001816076.1_genomic.fna	Salmonella_enterica	0.5209	427.502 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	-	Salmonella enterica subspecies enterica (subspecies I)	I 9:l,z28:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNPKG010000006.1 Salmonella enterica strain PNUSAS362489 SAMN36416370-rid18782943.denovo.06, whole genome shotgun sequence	255799..256236	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNPKG010000029.1 Salmonella enterica strain PNUSAS362489 SAMN36416370-rid18782943.guided.22, whole genome shotgun sequence	15054..15491	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPKG010000003.1	544731..545599	99.425	870	0						
GCA_032531825.1_PDT001816075.1_genomic.fna	Salmonella_enterica	0.5211	450.208 KB	5	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPKI010000007.1 Salmonella enterica strain PNUSAS362490 SAMN36416369-rid18782183.denovo.07, whole genome shotgun sequence	153053..153490	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPKI010000028.1 Salmonella enterica strain PNUSAS362490 SAMN36416369-rid18782183.guided.20, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032531845.1_PDT001816074.1_genomic.fna	Salmonella_enterica	0.5213	301.179 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPKH010000004.1 Salmonella enterica strain PNUSAS362491 SAMN36416368-rid18782173.denovo.04, whole genome shotgun sequence	161947..162384	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPKH010000032.1 Salmonella enterica strain PNUSAS362491 SAMN36416368-rid18782173.guided.23, whole genome shotgun sequence	4634..5071	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPKH010000019.1 Salmonella enterica strain PNUSAS362491 SAMN36416368-rid18782173.denovo.19, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNPKH010000019.1 Salmonella enterica strain PNUSAS362491 SAMN36416368-rid18782173.denovo.19, whole genome shotgun sequence	5032..5293																																																avrA	ABNPKH010000001.1	585161..586030	99.54	870	0						
GCA_032531865.1_PDT001816073.1_genomic.fna	Salmonella_enterica	0.5216	208.73 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPKJ010000002.1 Salmonella enterica strain PNUSAS362497 SAMN36416372-rid18782163.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPKJ010000047.1 Salmonella enterica strain PNUSAS362497 SAMN36416372-rid18782163.guided.30, whole genome shotgun sequence	6971..7408	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPKJ010000017.1 Salmonella enterica strain PNUSAS362497 SAMN36416372-rid18782163.denovo.17, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNPKJ010000017.1 Salmonella enterica strain PNUSAS362497 SAMN36416372-rid18782163.denovo.17, whole genome shotgun sequence	30407..30668																																																avrA	ABNPKJ010000009.1	39578..40446	100	869	0						
GCA_032531885.1_PDT001816072.1_genomic.fna	Salmonella_enterica	0.5215	640.395 KB	3	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNPKK010000001.1 Salmonella enterica strain PNUSAS362492 SAMN36416373-rid18782153.denovo.01, whole genome shotgun sequence	851989..852426	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNPKK010000025.1 Salmonella enterica strain PNUSAS362492 SAMN36416373-rid18782153.guided.16, whole genome shotgun sequence	12957..13394	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPKK010000003.1	544779..545647	99.655	869	0						
GCA_032531925.1_PDT001816071.1_genomic.fna	Salmonella_enterica	0.5212	430.495 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPKL010000002.1 Salmonella enterica strain PNUSAS362488 SAMN36416371-rid18782933.denovo.02, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPKL010000048.1 Salmonella enterica strain PNUSAS362488 SAMN36416371-rid18782933.guided.25, whole genome shotgun sequence	26119..26556	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPKL010000016.1	39461..40331	99.196	871	0						
GCA_032531945.1_PDT001816069.1_genomic.fna	Salmonella_enterica	0.5214	208.73 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPKN010000002.1 Salmonella enterica strain PNUSAS362496 SAMN36416364-rid18782133.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPKN010000049.1 Salmonella enterica strain PNUSAS362496 SAMN36416364-rid18782133.guided.22, whole genome shotgun sequence	20695..21132	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPKN010000019.1 Salmonella enterica strain PNUSAS362496 SAMN36416364-rid18782133.denovo.19, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNPKN010000019.1 Salmonella enterica strain PNUSAS362496 SAMN36416364-rid18782133.denovo.19, whole genome shotgun sequence	30407..30668																																																avrA	ABNPKN010000007.1	39622..40490	100	869	0						
GCA_032531965.1_PDT001816068.1_genomic.fna	Salmonella_enterica	0.5218	366.958 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPKO010000001.1 Salmonella enterica strain PNUSAS362494 SAMN36416366-rid18782923.denovo.01, whole genome shotgun sequence	477378..477815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPKO010000030.1 Salmonella enterica strain PNUSAS362494 SAMN36416366-rid18782923.guided.23, whole genome shotgun sequence	26674..27111	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPKO010000019.1	39348..40216	99.195	870	0						
GCA_032532005.1_PDT001816067.1_genomic.fna	Salmonella_enterica	0.5215	341.901 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPKP010000003.1 Salmonella enterica strain PNUSAS362493 SAMN36416367-rid18782123.denovo.03, whole genome shotgun sequence	392648..393085	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPKP010000048.1 Salmonella enterica strain PNUSAS362493 SAMN36416367-rid18782123.guided.20, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPKP010000016.1 Salmonella enterica strain PNUSAS362493 SAMN36416367-rid18782123.denovo.16, whole genome shotgun sequence	14681..15323	enterobacteriales	IncFII(S)	100	262 / 262	ABNPKP010000016.1 Salmonella enterica strain PNUSAS362493 SAMN36416367-rid18782123.denovo.16, whole genome shotgun sequence	30408..30669																																																avrA	ABNPKP010000004.1	209222..210090	100	869	0						
GCA_032532105.1_PDT001815982.1_genomic.fna	Salmonella_enterica	0.5229	66.817 KB	23	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	1	IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPKR010000056.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.denovo.056, whole genome shotgun sequence	11354..11791	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPKR010000095.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.denovo.097, whole genome shotgun sequence	2299..3135	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPKR010000095.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.denovo.097, whole genome shotgun sequence	1496..2299	Streptomycin	AF321551	aac(6')-Iaa	99.54	438/438	ABNPKR010000153.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.guided.063, whole genome shotgun sequence	14098..14535	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPKR010000155.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.guided.110, whole genome shotgun sequence	2130..2966	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPKR010000155.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.guided.110, whole genome shotgun sequence	1327..2130	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNPKR010000156.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.guided.111, whole genome shotgun sequence	2130..2966	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNPKR010000156.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.guided.111, whole genome shotgun sequence	1327..2130	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNPKR010000118.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.denovo.125, whole genome shotgun sequence	909..2054	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNPKR010000157.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.guided.114, whole genome shotgun sequence	940..2085	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.27	1214/1215	ABNPKR010000095.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.denovo.097, whole genome shotgun sequence	6271..7484	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNPKR010000158.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.guided.115, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNPKR010000095.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.denovo.097, whole genome shotgun sequence	620..1435	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNPKR010000155.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.guided.110, whole genome shotgun sequence	451..1266	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNPKR010000156.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.guided.111, whole genome shotgun sequence	451..1266	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNPKR010000095.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.denovo.097, whole genome shotgun sequence	4396..5670	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNPKR010000155.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.guided.110, whole genome shotgun sequence	4227..5501	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNPKR010000156.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.guided.111, whole genome shotgun sequence	4227..5501	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncC	100	417 / 417	ABNPKR010000031.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323298 SAMN36415660-rid18780743.denovo.031, whole genome shotgun sequence	17493..17909																																																						avrA	ABNPKR010000011.1	104607..105477	99.656	871	0						
GCA_032532125.1_PDT001815980.1_genomic.fna	Salmonella_enterica	0.5217	62.401 KB	26	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPKQ010000061.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323333 SAMN36415799-rid18780733.denovo.061, whole genome shotgun sequence	12511..12948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPKQ010000184.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323333 SAMN36415799-rid18780733.guided.070, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNPKQ010000099.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323333 SAMN36415799-rid18780733.denovo.102, whole genome shotgun sequence	1126..1385	enterobacteriales	IncX1	100	373 / 373	ABNPKQ010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323333 SAMN36415799-rid18780733.denovo.144, whole genome shotgun sequence	2153..2525																																																avrA	ABNPKQ010000039.1	39497..40366	99.655	870	0						
GCA_032532145.1_PDT001815979.1_genomic.fna	Salmonella_enterica	0.5206	66.174 KB	25	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPKS010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323319 SAMN36415879-rid18780723.denovo.032, whole genome shotgun sequence	15463..15900	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPKS010000108.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323319 SAMN36415879-rid18780723.denovo.110, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPKS010000108.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323319 SAMN36415879-rid18780723.denovo.110, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNPKS010000171.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323319 SAMN36415879-rid18780723.guided.122, whole genome shotgun sequence	3006..3842	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPKS010000171.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323319 SAMN36415879-rid18780723.guided.122, whole genome shotgun sequence	2203..3006	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNPKS010000173.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323319 SAMN36415879-rid18780723.guided.128, whole genome shotgun sequence	2164..2601	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNPKS010000107.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323319 SAMN36415879-rid18780723.denovo.109, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPKS010000172.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323319 SAMN36415879-rid18780723.guided.126, whole genome shotgun sequence	1531..2736	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNPKS010000120.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323319 SAMN36415879-rid18780723.denovo.123, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNPKS010000108.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323319 SAMN36415879-rid18780723.denovo.110, whole genome shotgun sequence	1831..2092		enterobacteriales	IncX1	100	373 / 373	ABNPKS010000090.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323319 SAMN36415879-rid18780723.denovo.091, whole genome shotgun sequence	2733..3105																																									avrA	ABNPKS010000040.1	39484..40353	99.655	870	0						
GCA_032532165.1_PDT001815978.1_genomic.fna	Salmonella_enterica	0.5222	73.67 KB	20	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,blaCMY-2	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNPKV010000007.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323340 SAMN36415809-rid18779513.denovo.007, whole genome shotgun sequence	15466..15903	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNPKV010000132.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323340 SAMN36415809-rid18779513.guided.054, whole genome shotgun sequence	15469..15906	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNPKV010000020.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323340 SAMN36415809-rid18779513.denovo.020, whole genome shotgun sequence	69796..70941	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNPKV010000134.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323340 SAMN36415809-rid18779513.guided.079, whole genome shotgun sequence	2472..3617	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	99.91	1146/1146	ABNPKV010000135.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323340 SAMN36415809-rid18779513.guided.080, whole genome shotgun sequence	2472..3617	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNPKV010000101.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323340 SAMN36415809-rid18779513.denovo.106, whole genome shotgun sequence	557..687	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPKV010000093.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12323340 SAMN36415809-rid18779513.denovo.098, whole genome shotgun sequence	6202..6343																																																avrA	ABNPKV010000009.1	105244..106113	99.54	870	0						
GCA_032532185.1_PDT001815977.1_genomic.fna	Salmonella_enterica	0.5219	114.768 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPKU010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.denovo.01, whole genome shotgun sequence	382205..382642	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPKU010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.denovo.41, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPKU010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.denovo.41, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNPKU010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.denovo.77, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPKU010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.denovo.77, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNPKU010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.guided.47, whole genome shotgun sequence	14838..15275	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPKU010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.guided.65, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPKU010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.guided.65, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNPKU010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.guided.76, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPKU010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.guided.76, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNPKU010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.denovo.70, whole genome shotgun sequence	2742..3955	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNPKU010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.guided.83, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNPKU010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.denovo.41, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPKU010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.guided.65, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPKU010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.denovo.41, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPKU010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.guided.51, whole genome shotgun sequence	2196..3395	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNPKU010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.denovo.69, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNPKU010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.guided.72, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPKU010000057.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323316 SAMN36415876-rid18780713.denovo.61, whole genome shotgun sequence	9109..9668																																																						avrA	ABNPKU010000004.1	124392..125261	99.655	870	0						
GCA_032532205.1_PDT001815976.1_genomic.fna	Salmonella_enterica	0.5204	79.561 KB	21	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPKW010000004.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323309 SAMN36415869-rid18779503.denovo.004, whole genome shotgun sequence	128418..128855	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPKW010000078.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323309 SAMN36415869-rid18779503.denovo.080, whole genome shotgun sequence	6683..7519	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPKW010000078.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323309 SAMN36415869-rid18779503.denovo.080, whole genome shotgun sequence	7519..8322	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNPKW010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323309 SAMN36415869-rid18779503.guided.082, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPKW010000132.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323309 SAMN36415869-rid18779503.guided.093, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPKW010000132.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323309 SAMN36415869-rid18779503.guided.093, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNPKW010000099.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323309 SAMN36415869-rid18779503.denovo.104, whole genome shotgun sequence	2291..3496	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPKW010000133.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323309 SAMN36415869-rid18779503.guided.103, whole genome shotgun sequence	2322..3527	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNPKW010000091.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323309 SAMN36415869-rid18779503.denovo.095, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNPKW010000078.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323309 SAMN36415869-rid18779503.denovo.080, whole genome shotgun sequence	5799..6060		enterobacteriales	IncFII	96.95	262 / 261	ABNPKW010000132.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323309 SAMN36415869-rid18779503.guided.093, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABNPKW010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323309 SAMN36415869-rid18779503.denovo.076, whole genome shotgun sequence	2153..2525																																		avrA	ABNPKW010000024.1	39484..40353	99.655	870	0						
GCA_032532225.1_PDT001815974.1_genomic.fna	Salmonella_enterica	0.5226	65.831 KB	24	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPKX010000024.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.denovo.024, whole genome shotgun sequence	52317..52754	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPKX010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.denovo.065, whole genome shotgun sequence	22983..23774	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPKX010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.denovo.065, whole genome shotgun sequence	22983..23774	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNPKX010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.denovo.112, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPKX010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.denovo.112, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNPKX010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.guided.059, whole genome shotgun sequence	14179..14616	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPKX010000149.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.guided.099, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPKX010000149.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.guided.099, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNPKX010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.guided.116, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPKX010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.guided.116, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNPKX010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.denovo.121, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNPKX010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.guided.133, whole genome shotgun sequence	346..1221	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNPKX010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.denovo.114, whole genome shotgun sequence	2808..4021	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNPKX010000151.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.guided.113, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNPKX010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.denovo.065, whole genome shotgun sequence	21639..22478	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPKX010000149.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.guided.099, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPKX010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.denovo.065, whole genome shotgun sequence	7923..9122	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPKX010000150.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.guided.100, whole genome shotgun sequence	1881..3080	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPKX010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323312 SAMN36415873-rid18780693.denovo.068, whole genome shotgun sequence	9109..9668																																																						avrA	ABNPKX010000008.1	124345..125214	99.655	870	0						
GCA_032532245.1_PDT001815973.1_genomic.fna	Salmonella_enterica	0.5222	82.36 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPKY010000005.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323336 SAMN36415802-rid18779493.denovo.005, whole genome shotgun sequence	83567..84004	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPKY010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323336 SAMN36415802-rid18779493.denovo.059, whole genome shotgun sequence	22812..23603	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPKY010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323336 SAMN36415802-rid18779493.denovo.059, whole genome shotgun sequence	22812..23603	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNPKY010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323336 SAMN36415802-rid18779493.denovo.123, whole genome shotgun sequence	93..908	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	aac(6')-Iaa	97.49	438/438	ABNPKY010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323336 SAMN36415802-rid18779493.guided.049, whole genome shotgun sequence	13269..13706	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPKY010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323336 SAMN36415802-rid18779493.guided.094, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPKY010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323336 SAMN36415802-rid18779493.guided.094, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNPKY010000136.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323336 SAMN36415802-rid18779493.guided.126, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	sul1	100	840/840	ABNPKY010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323336 SAMN36415802-rid18779493.denovo.059, whole genome shotgun sequence	21468..22307	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPKY010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323336 SAMN36415802-rid18779493.guided.094, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPKY010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323336 SAMN36415802-rid18779493.denovo.059, whole genome shotgun sequence	7752..8951	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPKY010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323336 SAMN36415802-rid18779493.guided.095, whole genome shotgun sequence	1159..2358	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPKY010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323336 SAMN36415802-rid18779493.denovo.103, whole genome shotgun sequence	2260..2819																																																						avrA	ABNPKY010000016.1	94795..95664	99.655	870	0						
GCA_032532265.1_PDT001815971.1_genomic.fna	Salmonella_enterica	0.5191	46.766 KB	38	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	-:g,s,t:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	3	Col(pHAD28),IncHI2,IncHI2A	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	-	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,s,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPLA010000069.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323147 SAMN36415634-rid18779483.denovo.069, whole genome shotgun sequence	12446..12883	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPLA010000254.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323147 SAMN36415634-rid18779483.guided.071, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNPLA010000173.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323147 SAMN36415634-rid18779483.denovo.178, whole genome shotgun sequence	2199..3404	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPLA010000258.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323147 SAMN36415634-rid18779483.guided.177, whole genome shotgun sequence	2230..3435	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNPLA010000165.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323147 SAMN36415634-rid18779483.denovo.169, whole genome shotgun sequence	186..316	enterobacteriales	IncHI2	100	327 / 327	ABNPLA010000091.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323147 SAMN36415634-rid18779483.denovo.093, whole genome shotgun sequence	7218..7544		enterobacteriales	IncHI2A	99.52	630 / 630	ABNPLA010000140.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323147 SAMN36415634-rid18779483.denovo.143, whole genome shotgun sequence	1567..2196																																									avrA	ABNPLA010000041.1	39428..40297	98.966	870	0						
GCA_032532285.1_PDT001815970.1_genomic.fna	Salmonella_enterica	0.5219	146.791 KB	11	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPKZ010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323297 SAMN36415659-rid18780673.denovo.001, whole genome shotgun sequence	234796..235233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPKZ010000108.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323297 SAMN36415659-rid18780673.guided.065, whole genome shotgun sequence	8774..9211	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABNPKZ010000077.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323297 SAMN36415659-rid18780673.denovo.081, whole genome shotgun sequence	2246..2354	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPKZ010000038.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323297 SAMN36415659-rid18780673.denovo.040, whole genome shotgun sequence	28177..28318																																																											
GCA_032532305.1_PDT001815969.1_genomic.fna	Salmonella_enterica	0.5235	81.852 KB	17	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNPLD010000002.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323287 SAMN36415637-rid18780663.denovo.002, whole genome shotgun sequence	11314..11751	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNPLD010000117.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323287 SAMN36415637-rid18780663.guided.055, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNPLD010000093.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323287 SAMN36415637-rid18780663.denovo.096, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABNPLD010000090.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323287 SAMN36415637-rid18780663.denovo.093, whole genome shotgun sequence	3175..3285																																																avrA	ABNPLD010000001.1	178452..179321	99.425	870	0						
GCA_032532325.1_PDT001815968.1_genomic.fna	Salmonella_enterica	0.5216	60.625 KB	25	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPLB010000020.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12323302 SAMN36415664-rid18780653.denovo.020, whole genome shotgun sequence	52483..52920	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPLB010000152.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12323302 SAMN36415664-rid18780653.guided.069, whole genome shotgun sequence	14374..14811	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPLB010000006.1	95452..96321	99.195	870	0						
GCA_032532405.1_PDT001815964.1_genomic.fna	Salmonella_enterica	0.5207	97.388 KB	17	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNPLI010000003.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12323320 SAMN36415880-rid18780623.denovo.003, whole genome shotgun sequence	15241..15678	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNPLI010000114.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12323320 SAMN36415880-rid18780623.guided.056, whole genome shotgun sequence	8080..8517	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNPLI010000006.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12323320 SAMN36415880-rid18780623.denovo.006, whole genome shotgun sequence	99579..100001	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNPLI010000113.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12323320 SAMN36415880-rid18780623.guided.055, whole genome shotgun sequence	18574..18996	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNPLI010000078.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12323320 SAMN36415880-rid18780623.denovo.082, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABNPLI010000074.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12323320 SAMN36415880-rid18780623.denovo.078, whole genome shotgun sequence	3175..3285																																																avrA	ABNPLI010000013.1	103225..104094	99.655	870	0						
GCA_032532445.1_PDT001815963.1_genomic.fna	Salmonella_enterica	0.5201	64.938 KB	26	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	5	ColpVC,IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPLH010000027.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323315 SAMN36415875-rid18780613.denovo.027, whole genome shotgun sequence	40276..40713	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPLH010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323315 SAMN36415875-rid18780613.denovo.119, whole genome shotgun sequence	2704..3540	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNPLH010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323315 SAMN36415875-rid18780613.denovo.119, whole genome shotgun sequence	3540..4343	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNPLH010000190.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323315 SAMN36415875-rid18780613.guided.073, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPLH010000193.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323315 SAMN36415875-rid18780613.guided.122, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNPLH010000193.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323315 SAMN36415875-rid18780613.guided.122, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNPLH010000124.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323315 SAMN36415875-rid18780613.denovo.128, whole genome shotgun sequence	2381..3586	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPLH010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323315 SAMN36415875-rid18780613.guided.130, whole genome shotgun sequence	2310..3515	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	96.89	193 / 193	ABNPLH010000146.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323315 SAMN36415875-rid18780613.denovo.151, whole genome shotgun sequence	474..666	enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNPLH010000129.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323315 SAMN36415875-rid18780613.denovo.134, whole genome shotgun sequence	1340..2021		enterobacteriales	IncFII	96.95	262 / 261	ABNPLH010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323315 SAMN36415875-rid18780613.denovo.119, whole genome shotgun sequence	1820..2081		enterobacteriales	IncFII	96.95	262 / 261	ABNPLH010000193.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323315 SAMN36415875-rid18780613.guided.122, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNPLH010000031.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323315 SAMN36415875-rid18780613.denovo.031, whole genome shotgun sequence	45315..45456		enterobacteriales	IncX1	100	373 / 373	ABNPLH010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323315 SAMN36415875-rid18780613.denovo.098, whole genome shotgun sequence	2153..2525																				avrA	ABNPLH010000040.1	39484..40353	99.655	870	0						
GCA_032532565.1_PDT001815954.1_genomic.fna	Salmonella_enterica	0.5211	483.55 KB	4	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	6	aac(6')-Iaa,aadA2,aac(6')-Iaa,aadA2,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A),dfrA12,dfrA12	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQCNU010000001.1 TPA_asm: Salmonella enterica strain SALM3 isolate Food of animal origin SAMN30674661-rid18780553.denovo.01, whole genome shotgun sequence	135669..136106	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	DAQCNU010000026.1 TPA_asm: Salmonella enterica strain SALM3 isolate Food of animal origin SAMN30674661-rid18780553.denovo.27, whole genome shotgun sequence	11050..11841	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	98.63	438/438	DAQCNU010000046.1 TPA_asm: Salmonella enterica strain SALM3 isolate Food of animal origin SAMN30674661-rid18780553.guided.28, whole genome shotgun sequence	8190..8627	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	DAQCNU010000048.1 TPA_asm: Salmonella enterica strain SALM3 isolate Food of animal origin SAMN30674661-rid18780553.guided.31, whole genome shotgun sequence	2039..2830	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	DAQCNU010000035.1 TPA_asm: Salmonella enterica strain SALM3 isolate Food of animal origin SAMN30674661-rid18780553.denovo.39, whole genome shotgun sequence	408..1268	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQCNU010000049.1 TPA_asm: Salmonella enterica strain SALM3 isolate Food of animal origin SAMN30674661-rid18780553.guided.40, whole genome shotgun sequence	965..1825	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	DAQCNU010000026.1 TPA_asm: Salmonella enterica strain SALM3 isolate Food of animal origin SAMN30674661-rid18780553.denovo.27, whole genome shotgun sequence	9706..10545	Sulfamethoxazole	U12338	sul1	100	840/840	DAQCNU010000048.1 TPA_asm: Salmonella enterica strain SALM3 isolate Food of animal origin SAMN30674661-rid18780553.guided.31, whole genome shotgun sequence	3335..4174	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQCNU010000026.1 TPA_asm: Salmonella enterica strain SALM3 isolate Food of animal origin SAMN30674661-rid18780553.denovo.27, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQCNU010000048.1 TPA_asm: Salmonella enterica strain SALM3 isolate Food of animal origin SAMN30674661-rid18780553.guided.31, whole genome shotgun sequence	11233..12432	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	DAQCNU010000026.1 TPA_asm: Salmonella enterica strain SALM3 isolate Food of animal origin SAMN30674661-rid18780553.denovo.27, whole genome shotgun sequence	12249..12746	Trimethoprim	AM040708	dfrA12	100	498/498	DAQCNU010000048.1 TPA_asm: Salmonella enterica strain SALM3 isolate Food of animal origin SAMN30674661-rid18780553.guided.31, whole genome shotgun sequence	1134..1631	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQCNU010000033.1 TPA_asm: Salmonella enterica strain SALM3 isolate Food of animal origin SAMN30674661-rid18780553.denovo.37, whole genome shotgun sequence	557..687	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQCNU010000025.1 TPA_asm: Salmonella enterica strain SALM3 isolate Food of animal origin SAMN30674661-rid18780553.denovo.26, whole genome shotgun sequence	2575..2716																																																avrA	DAQCNU010000003.1	39431..40300	99.31	870	0						
GCA_032532605.1_PDT001815953.1_genomic.fna	Salmonella_enterica	0.5215	206.992 KB	7	aroC_189,dnaN_193,hemD_8,hisD_539,purE_64,sucA_9,thrA_185	1818	8:r,i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_189	dnaN	100	100	dnaN_193	hemD	100	100	hemD_8	hisD	100	100	hisD_539	purE	100	100	purE_64	sucA	100	100	sucA_9	thrA	100	100	thrA_185	8	r,i	z6	Salmonella enterica subspecies enterica (subspecies I)	Altona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQCNS010000001.1 TPA_asm: Salmonella enterica strain SALM25 isolate Food of animal origin SAMN30674660-rid18780543.denovo.01, whole genome shotgun sequence	141014..141451	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQCNS010000040.1 TPA_asm: Salmonella enterica strain SALM25 isolate Food of animal origin SAMN30674660-rid18780543.guided.30, whole genome shotgun sequence	1006..1443	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQCNS010000007.1	39834..40703	99.08	870	0						
GCA_032532645.1_PDT001815952.1_genomic.fna	Salmonella_enterica	0.5216	198.363 KB	9	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	2	gyrA_p.D87N,parC_p.T57S	3	Col156,ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQCNT010000002.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.denovo.02, whole genome shotgun sequence	222247..222684	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQCNT010000036.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.denovo.40, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAQCNT010000036.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.denovo.40, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAQCNT010000036.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.denovo.40, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAQCNT010000036.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.denovo.40, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAQCNT010000036.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.denovo.40, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	DAQCNT010000054.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.guided.36, whole genome shotgun sequence	9601..10038	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQCNT010000055.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.guided.39, whole genome shotgun sequence	1517..2353	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAQCNT010000055.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.guided.39, whole genome shotgun sequence	715..1517	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAQCNT010000055.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.guided.39, whole genome shotgun sequence	714..1517	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAQCNT010000055.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.guided.39, whole genome shotgun sequence	714..1517	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAQCNT010000055.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.guided.39, whole genome shotgun sequence	714..1517	Streptomycin	AF321550	tet(A)	100	1200/1200	DAQCNT010000037.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.denovo.42, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQCNT010000056.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.guided.41, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col156	96.05	152 / 154	DAQCNT010000040.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.denovo.45, whole genome shotgun sequence	922..1073	enterobacteriales	ColpVC	100	193 / 193	DAQCNT010000041.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.denovo.46, whole genome shotgun sequence	192..384		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQCNT010000022.1 TPA_asm: Salmonella enterica strain SALM24 isolate Food of animal origin SAMN30674659-rid18780533.denovo.22, whole genome shotgun sequence	73125..73266																																									avrA	DAQCNT010000010.1	39349..40218	99.655	870	0						
GCA_032532665.1_PDT001815951.1_genomic.fna	Salmonella_enterica	0.522	180.623 KB	9	aroC_43,dnaN_41,hemD_16,hisD_13,purE_40,sucA_13,thrA_3	3667	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_3	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQCNR010000003.1 TPA_asm: Salmonella enterica strain SALM2 isolate Food of animal origin SAMN30674658-rid18779443.denovo.03, whole genome shotgun sequence	153850..154287	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQCNR010000046.1 TPA_asm: Salmonella enterica strain SALM2 isolate Food of animal origin SAMN30674658-rid18779443.guided.37, whole genome shotgun sequence	1617..2054	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	97.71	262 / 262	DAQCNR010000025.1 TPA_asm: Salmonella enterica strain SALM2 isolate Food of animal origin SAMN30674658-rid18779443.denovo.25, whole genome shotgun sequence	60387..60646																																																																	
GCA_032532685.1_PDT001815949.1_genomic.fna	Salmonella_enterica	0.5206	333.938 KB	6	aroC_115,dnaN_75,hemD_8,hisD_115,purE_2,sucA_116,thrA_110	314	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_115	dnaN	100	100	dnaN_75	hemD	100	100	hemD_8	hisD	100	100	hisD_115	purE	100	100	purE_2	sucA	100	100	sucA_116	thrA	100	100	thrA_110	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQCNV010000005.1 TPA_asm: Salmonella enterica strain SALM10 isolate Food of animal origin SAMN30674657-rid18780523.denovo.05, whole genome shotgun sequence	159069..159506	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQCNV010000034.1 TPA_asm: Salmonella enterica strain SALM10 isolate Food of animal origin SAMN30674657-rid18780523.guided.24, whole genome shotgun sequence	8552..8989	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQCNV010000001.1	39474..40343	98.851	870	0						
GCA_032532705.1_PDT001815948.1_genomic.fna	Salmonella_enterica	0.5221	175.523 KB	10	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	2	gyrA_p.D87N,parC_p.T57S	2	Col156,ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQCNW010000012.1 TPA_asm: Salmonella enterica strain SALM1 isolate Food of animal origin SAMN30674656-rid18780513.denovo.12, whole genome shotgun sequence	24992..25429	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQCNW010000049.1 TPA_asm: Salmonella enterica strain SALM1 isolate Food of animal origin SAMN30674656-rid18780513.denovo.53, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAQCNW010000049.1 TPA_asm: Salmonella enterica strain SALM1 isolate Food of animal origin SAMN30674656-rid18780513.denovo.53, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAQCNW010000049.1 TPA_asm: Salmonella enterica strain SALM1 isolate Food of animal origin SAMN30674656-rid18780513.denovo.53, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAQCNW010000049.1 TPA_asm: Salmonella enterica strain SALM1 isolate Food of animal origin SAMN30674656-rid18780513.denovo.53, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAQCNW010000049.1 TPA_asm: Salmonella enterica strain SALM1 isolate Food of animal origin SAMN30674656-rid18780513.denovo.53, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	DAQCNW010000063.1 TPA_asm: Salmonella enterica strain SALM1 isolate Food of animal origin SAMN30674656-rid18780513.guided.37, whole genome shotgun sequence	16856..17293	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQCNW010000066.1 TPA_asm: Salmonella enterica strain SALM1 isolate Food of animal origin SAMN30674656-rid18780513.guided.51, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAQCNW010000066.1 TPA_asm: Salmonella enterica strain SALM1 isolate Food of animal origin SAMN30674656-rid18780513.guided.51, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAQCNW010000066.1 TPA_asm: Salmonella enterica strain SALM1 isolate Food of animal origin SAMN30674656-rid18780513.guided.51, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAQCNW010000066.1 TPA_asm: Salmonella enterica strain SALM1 isolate Food of animal origin SAMN30674656-rid18780513.guided.51, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAQCNW010000066.1 TPA_asm: Salmonella enterica strain SALM1 isolate Food of animal origin SAMN30674656-rid18780513.guided.51, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	DAQCNW010000050.1 TPA_asm: Salmonella enterica strain SALM1 isolate Food of animal origin SAMN30674656-rid18780513.denovo.55, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQCNW010000067.1 TPA_asm: Salmonella enterica strain SALM1 isolate Food of animal origin SAMN30674656-rid18780513.guided.54, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col156	96.05	152 / 154	DAQCNW010000054.1 TPA_asm: Salmonella enterica strain SALM1 isolate Food of animal origin SAMN30674656-rid18780513.denovo.59, whole genome shotgun sequence	922..1073	enterobacteriales	ColpVC	100	193 / 193	DAQCNW010000055.1 TPA_asm: Salmonella enterica strain SALM1 isolate Food of animal origin SAMN30674656-rid18780513.denovo.60, whole genome shotgun sequence	192..384																																																avrA	DAQCNW010000007.1	39349..40218	99.655	870	0						
GCA_032532725.1_PDT001815946.1_genomic.fna	Salmonella_enterica	0.5212	364.403 KB	6	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQCNY010000004.1 TPA_asm: Salmonella enterica strain S2-3B isolate Food of animal origin SAMN30674654-rid18779433.denovo.04, whole genome shotgun sequence	380333..380770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQCNY010000047.1 TPA_asm: Salmonella enterica strain S2-3B isolate Food of animal origin SAMN30674654-rid18779433.guided.26, whole genome shotgun sequence	31315..31752	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032532745.1_PDT001815947.1_genomic.fna	Salmonella_enterica	0.5207	364.403 KB	6	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQCNX010000004.1 TPA_asm: Salmonella enterica strain S4-3C isolate Food of animal origin SAMN30674655-rid18782023.denovo.04, whole genome shotgun sequence	380333..380770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQCNX010000048.1 TPA_asm: Salmonella enterica strain S4-3C isolate Food of animal origin SAMN30674655-rid18782023.guided.21, whole genome shotgun sequence	20567..21004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032532765.1_PDT001815945.1_genomic.fna	Salmonella_enterica	0.5212	321.311 KB	6	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQCOA010000004.1 TPA_asm: Salmonella enterica strain S2-2C isolate Food of animal origin SAMN30674653-rid18780503.denovo.04, whole genome shotgun sequence	380333..380770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQCOA010000044.1 TPA_asm: Salmonella enterica strain S2-2C isolate Food of animal origin SAMN30674653-rid18780503.guided.32, whole genome shotgun sequence	6089..6526	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032532785.1_PDT001815944.1_genomic.fna	Salmonella_enterica	0.5209	364.403 KB	6	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQCOC010000004.1 TPA_asm: Salmonella enterica strain S2-1A isolate Food of animal origin SAMN30674652-rid18780493.denovo.04, whole genome shotgun sequence	380333..380770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQCOC010000047.1 TPA_asm: Salmonella enterica strain S2-1A isolate Food of animal origin SAMN30674652-rid18780493.guided.18, whole genome shotgun sequence	40130..40567	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032532805.1_PDT001815943.1_genomic.fna	Salmonella_enterica	0.5214	231.055 KB	7	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQCOB010000002.1 TPA_asm: Salmonella enterica strain S1-2A isolate Food of animal origin SAMN30674651-rid18780483.denovo.02, whole genome shotgun sequence	380333..380770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQCOB010000049.1 TPA_asm: Salmonella enterica strain S1-2A isolate Food of animal origin SAMN30674651-rid18780483.guided.37, whole genome shotgun sequence	3133..3570	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032532825.1_PDT001815942.1_genomic.fna	Salmonella_enterica	0.5212	364.403 KB	6	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQCNZ010000004.1 TPA_asm: Salmonella enterica strain S1-1B isolate Food of animal origin SAMN30674650-rid18780473.denovo.04, whole genome shotgun sequence	380333..380770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQCNZ010000049.1 TPA_asm: Salmonella enterica strain S1-1B isolate Food of animal origin SAMN30674650-rid18780473.guided.36, whole genome shotgun sequence	2424..2861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032532845.1_PDT001815941.1_genomic.fna	Salmonella_enterica	0.5211	321.311 KB	6	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQCOD010000004.1 TPA_asm: Salmonella enterica strain S1-1A isolate Food of animal origin SAMN30674649-rid18779423.denovo.04, whole genome shotgun sequence	380333..380770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQCOD010000047.1 TPA_asm: Salmonella enterica strain S1-1A isolate Food of animal origin SAMN30674649-rid18779423.guided.31, whole genome shotgun sequence	5191..5628	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032533285.1_PDT001815835.1_genomic.fna	Salmonella_enterica	0.5232	77.745 KB	21	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNPLJ010000025.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12323317 SAMN36415877-rid18779173.denovo.025, whole genome shotgun sequence	14134..14571	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNPLJ010000122.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12323317 SAMN36415877-rid18779173.guided.081, whole genome shotgun sequence	8459..8896	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPLJ010000005.1	102749..103618	99.77	870	0						
GCA_032533305.1_PDT001815834.1_genomic.fna	Salmonella_enterica	0.5213	76.3 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPLK010000014.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323318 SAMN36415878-rid18778643.denovo.014, whole genome shotgun sequence	84702..85139	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPLK010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323318 SAMN36415878-rid18778643.guided.063, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	100	373 / 373	ABNPLK010000095.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323318 SAMN36415878-rid18778643.denovo.098, whole genome shotgun sequence	2732..3104																																																						avrA	ABNPLK010000038.1	39484..40353	99.655	870	0						
GCA_032533325.1_PDT001815832.1_genomic.fna	Salmonella_enterica	0.5216	66.242 KB	25	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPLN010000019.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323311 SAMN36415874-rid18779163.denovo.019, whole genome shotgun sequence	52289..52726	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPLN010000179.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323311 SAMN36415874-rid18779163.guided.059, whole genome shotgun sequence	15522..15959	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNPLN010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323311 SAMN36415874-rid18779163.denovo.087, whole genome shotgun sequence	4655..4914	enterobacteriales	IncX1	100	373 / 373	ABNPLN010000140.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323311 SAMN36415874-rid18779163.denovo.143, whole genome shotgun sequence	1156..1528																																																avrA	ABNPLN010000006.1	110018..110887	99.655	870	0						
GCA_032533345.1_PDT001815831.1_genomic.fna	Salmonella_enterica	0.5211	119.246 KB	13	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNPLL010000001.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12323313 SAMN36415872-rid18778623.denovo.01, whole genome shotgun sequence	223444..223881	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNPLL010000077.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12323313 SAMN36415872-rid18778623.guided.57, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPLL010000005.1	102670..103539	99.77	870	0						
GCA_032533365.1_PDT001815830.1_genomic.fna	Salmonella_enterica	0.5226	59.75 KB	24	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPLM010000010.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323314 SAMN36415871-rid18779153.denovo.010, whole genome shotgun sequence	105597..106034	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNPLM010000067.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323314 SAMN36415871-rid18779153.denovo.068, whole genome shotgun sequence	6053..6855	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPLM010000067.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323314 SAMN36415871-rid18779153.denovo.068, whole genome shotgun sequence	6053..6856	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPLM010000067.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323314 SAMN36415871-rid18779153.denovo.068, whole genome shotgun sequence	6053..6856	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPLM010000067.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323314 SAMN36415871-rid18779153.denovo.068, whole genome shotgun sequence	6053..6856	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNPLM010000067.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323314 SAMN36415871-rid18779153.denovo.068, whole genome shotgun sequence	5313..6053	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNPLM010000067.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323314 SAMN36415871-rid18779153.denovo.068, whole genome shotgun sequence	5313..6053	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABNPLM010000165.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323314 SAMN36415871-rid18779153.guided.095, whole genome shotgun sequence	7601..8038	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNPLM010000166.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323314 SAMN36415871-rid18779153.guided.106, whole genome shotgun sequence	489..1291	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPLM010000166.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323314 SAMN36415871-rid18779153.guided.106, whole genome shotgun sequence	488..1291	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPLM010000166.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323314 SAMN36415871-rid18779153.guided.106, whole genome shotgun sequence	488..1291	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPLM010000166.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323314 SAMN36415871-rid18779153.guided.106, whole genome shotgun sequence	488..1291	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNPLM010000166.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323314 SAMN36415871-rid18779153.guided.106, whole genome shotgun sequence	1291..2031	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNPLM010000166.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323314 SAMN36415871-rid18779153.guided.106, whole genome shotgun sequence	1291..2031	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNPLM010000107.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323314 SAMN36415871-rid18779153.denovo.111, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABNPLM010000077.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323314 SAMN36415871-rid18779153.denovo.079, whole genome shotgun sequence	4946..5442																																																avrA	ABNPLM010000022.1	61521..62390	98.966	870	0						
GCA_032533385.1_PDT001815829.1_genomic.fna	Salmonella_enterica	0.5222	76.625 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPLO010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323310 SAMN36415868-rid18778613.denovo.015, whole genome shotgun sequence	75604..76041	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPLO010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323310 SAMN36415868-rid18778613.denovo.062, whole genome shotgun sequence	22761..23552	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPLO010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323310 SAMN36415868-rid18778613.denovo.062, whole genome shotgun sequence	22761..23552	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNPLO010000137.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323310 SAMN36415868-rid18778613.guided.060, whole genome shotgun sequence	14098..14535	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPLO010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323310 SAMN36415868-rid18778613.guided.112, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPLO010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323310 SAMN36415868-rid18778613.guided.112, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNPLO010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323310 SAMN36415868-rid18778613.denovo.062, whole genome shotgun sequence	21417..22256	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPLO010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323310 SAMN36415868-rid18778613.guided.112, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPLO010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323310 SAMN36415868-rid18778613.denovo.062, whole genome shotgun sequence	7701..8900	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPLO010000138.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323310 SAMN36415868-rid18778613.guided.073, whole genome shotgun sequence	7840..9039	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPLO010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323310 SAMN36415868-rid18778613.denovo.041, whole genome shotgun sequence	33316..33875																																																						avrA	ABNPLO010000007.1	124360..125229	99.655	870	0						
GCA_032533685.1_PDT001815766.1_genomic.fna	Salmonella_enterica	0.5231	61.805 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	11	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPLP010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.denovo.059, whole genome shotgun sequence	12459..12896	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPLP010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.denovo.092, whole genome shotgun sequence	11984..12775	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPLP010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.denovo.092, whole genome shotgun sequence	11984..12775	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNPLP010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.denovo.123, whole genome shotgun sequence	1053..2078	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPLP010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.denovo.123, whole genome shotgun sequence	48..824	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNPLP010000154.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.denovo.165, whole genome shotgun sequence	93..908	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	X62115	aadA1	99.75	792/792	ABNPLP010000168.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.guided.091, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPLP010000168.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.guided.091, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNPLP010000169.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.guided.101, whole genome shotgun sequence	10647..11084	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNPLP010000173.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.guided.126, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPLP010000173.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.guided.126, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNPLP010000177.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.guided.164, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	X62115	blaCTX-M-65	100	876/876	ABNPLP010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.denovo.143, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNPLP010000176.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.guided.147, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNPLP010000132.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.denovo.141, whole genome shotgun sequence	320..736	Fosfomycin	AB522970	fosA3	100	417/417	ABNPLP010000175.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.guided.140, whole genome shotgun sequence	361..777	Fosfomycin	AB522970	floR	98.19	1214/1215	ABNPLP010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.denovo.119, whole genome shotgun sequence	2822..4035	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNPLP010000172.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.guided.124, whole genome shotgun sequence	1083..2296	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNPLP010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.denovo.092, whole genome shotgun sequence	10640..11479	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPLP010000168.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.guided.091, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPLP010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.denovo.116, whole genome shotgun sequence	1814..3013	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPLP010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.guided.114, whole genome shotgun sequence	1845..3044	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNPLP010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.denovo.115, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNPLP010000174.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.guided.131, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPLP010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323339 SAMN36415797-rid18778413.denovo.118, whole genome shotgun sequence	2169..2728																																																						avrA	ABNPLP010000020.1	39524..40393	99.655	870	0						
GCA_032533705.1_PDT001815765.1_genomic.fna	Salmonella_enterica	0.5207	79.217 KB	17	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPLQ010000003.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323334 SAMN36415800-rid18778713.denovo.003, whole genome shotgun sequence	82038..82475	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPLQ010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323334 SAMN36415800-rid18778713.denovo.083, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPLQ010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323334 SAMN36415800-rid18778713.denovo.083, whole genome shotgun sequence	7518..8321	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNPLQ010000132.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323334 SAMN36415800-rid18778713.guided.073, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPLQ010000133.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323334 SAMN36415800-rid18778713.guided.094, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPLQ010000133.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323334 SAMN36415800-rid18778713.guided.094, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNPLQ010000097.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323334 SAMN36415800-rid18778713.denovo.101, whole genome shotgun sequence	2298..3503	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPLQ010000134.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323334 SAMN36415800-rid18778713.guided.112, whole genome shotgun sequence	823..2028	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNPLQ010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323334 SAMN36415800-rid18778713.denovo.100, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNPLQ010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323334 SAMN36415800-rid18778713.denovo.083, whole genome shotgun sequence	5798..6059		enterobacteriales	IncFII	96.95	262 / 261	ABNPLQ010000133.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323334 SAMN36415800-rid18778713.guided.094, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABNPLQ010000077.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323334 SAMN36415800-rid18778713.denovo.080, whole genome shotgun sequence	2732..3104																																		avrA	ABNPLQ010000037.1	39484..40353	99.655	870	0						
GCA_032533725.1_PDT001815764.1_genomic.fna	Salmonella_enterica	0.5209	76.394 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPLR010000007.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323335 SAMN36415801-rid18778403.denovo.007, whole genome shotgun sequence	84236..84673	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPLR010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323335 SAMN36415801-rid18778403.guided.068, whole genome shotgun sequence	8799..9236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNPLR010000075.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323335 SAMN36415801-rid18778403.denovo.078, whole genome shotgun sequence	4655..4914	enterobacteriales	IncX1	100	373 / 373	ABNPLR010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323335 SAMN36415801-rid18778403.denovo.119, whole genome shotgun sequence	1271..1643																																																avrA	ABNPLR010000008.1	128866..129735	99.655	870	0						
GCA_032533745.1_PDT001815762.1_genomic.fna	Salmonella_enterica	0.5241	49.872 KB	28	aroC_341,dnaN_11,hemD_8,hisD_404,purE_61,sucA_504,thrA_341	2398	-:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_341	dnaN	100	100	dnaN_11	hemD	100	100	hemD_8	hisD	100	100	hisD_404	purE	100	100	purE_61	sucA	100	100	sucA_504	thrA	100	100	thrA_341	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNPLT010000009.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323301 SAMN36415663-rid18778393.denovo.009, whole genome shotgun sequence	80095..80532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNPLT010000181.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323301 SAMN36415663-rid18778393.guided.114, whole genome shotgun sequence	3011..3448	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPLT010000036.1	43264..44133	98.966	870	0						
GCA_032533765.1_PDT001815763.1_genomic.fna	Salmonella_enterica	0.5227	66.621 KB	24	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	2	Col440I,ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPLS010000056.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323338 SAMN36415798-rid18778703.denovo.057, whole genome shotgun sequence	13418..13855	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPLS010000099.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323338 SAMN36415798-rid18778703.denovo.103, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNPLS010000099.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323338 SAMN36415798-rid18778703.denovo.103, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPLS010000099.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323338 SAMN36415798-rid18778703.denovo.103, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPLS010000099.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323338 SAMN36415798-rid18778703.denovo.103, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPLS010000099.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323338 SAMN36415798-rid18778703.denovo.103, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNPLS010000132.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323338 SAMN36415798-rid18778703.guided.027, whole genome shotgun sequence	14167..14604	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPLS010000135.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323338 SAMN36415798-rid18778703.guided.102, whole genome shotgun sequence	1679..2515	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNPLS010000135.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323338 SAMN36415798-rid18778703.guided.102, whole genome shotgun sequence	877..1679	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPLS010000135.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323338 SAMN36415798-rid18778703.guided.102, whole genome shotgun sequence	876..1679	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPLS010000135.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323338 SAMN36415798-rid18778703.guided.102, whole genome shotgun sequence	876..1679	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPLS010000135.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323338 SAMN36415798-rid18778703.guided.102, whole genome shotgun sequence	876..1679	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNPLS010000100.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323338 SAMN36415798-rid18778703.denovo.105, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPLS010000136.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323338 SAMN36415798-rid18778703.guided.104, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	ABNPLS010000106.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323338 SAMN36415798-rid18778703.denovo.111, whole genome shotgun sequence	1566..1675	enterobacteriales	ColpVC	98.96	193 / 193	ABNPLS010000109.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323338 SAMN36415798-rid18778703.denovo.114, whole genome shotgun sequence	799..991																																																avrA	ABNPLS010000003.1	149403..150272	99.655	870	0						
GCA_032533785.1_PDT001815761.1_genomic.fna	Salmonella_enterica	0.5224	74.232 KB	21	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNPLU010000052.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323304 SAMN36415665-rid18778383.denovo.052, whole genome shotgun sequence	15521..15958	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNPLU010000131.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323304 SAMN36415665-rid18778383.guided.054, whole genome shotgun sequence	14460..14897	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNPLU010000107.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323304 SAMN36415665-rid18778383.denovo.110, whole genome shotgun sequence	186..316																																																						avrA	ABNPLU010000009.1	102523..103392	99.425	870	0						
GCA_032533805.1_PDT001815758.1_genomic.fna	Salmonella_enterica	0.5217	75.763 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(4)-Ia,aac(3)-IV,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPLW010000012.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323291 SAMN36415658-rid18778683.denovo.012, whole genome shotgun sequence	15479..15916	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNPLW010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323291 SAMN36415658-rid18778683.denovo.094, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPLW010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323291 SAMN36415658-rid18778683.denovo.094, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNPLW010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323291 SAMN36415658-rid18778683.guided.055, whole genome shotgun sequence	15467..15904	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNPLW010000119.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323291 SAMN36415658-rid18778683.guided.091, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	99.87	777/777	ABNPLW010000119.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323291 SAMN36415658-rid18778683.guided.091, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(4)-Ia	100	1026/1026	ABNPLW010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323291 SAMN36415658-rid18778683.guided.092, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPLW010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323291 SAMN36415658-rid18778683.guided.092, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	tet(A)	100	1200/1200	ABNPLW010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323291 SAMN36415658-rid18778683.denovo.096, whole genome shotgun sequence	156..1355	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPLW010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323291 SAMN36415658-rid18778683.guided.102, whole genome shotgun sequence	197..1396	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPLW010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323291 SAMN36415658-rid18778683.denovo.072, whole genome shotgun sequence	14637..15196																																																						avrA	ABNPLW010000021.1	39430..40299	99.655	870	0						
GCA_032533825.1_PDT001815760.1_genomic.fna	Salmonella_enterica	0.5242	51.831 KB	30	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPLV010000067.1 Salmonella enterica subsp. enterica strain FSIS12323299 SAMN36415661-rid18778693.denovo.068, whole genome shotgun sequence	11353..11790	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPLV010000182.1 Salmonella enterica subsp. enterica strain FSIS12323299 SAMN36415661-rid18778693.guided.074, whole genome shotgun sequence	10736..11173	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABNPLV010000139.1 Salmonella enterica subsp. enterica strain FSIS12323299 SAMN36415661-rid18778693.denovo.143, whole genome shotgun sequence	2246..2354	enterobacteriales	ColpVC	98.96	193 / 193	ABNPLV010000152.1 Salmonella enterica subsp. enterica strain FSIS12323299 SAMN36415661-rid18778693.denovo.156, whole genome shotgun sequence	805..997		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPLV010000127.1 Salmonella enterica subsp. enterica strain FSIS12323299 SAMN36415661-rid18778693.denovo.131, whole genome shotgun sequence	301..442																																																				
GCA_032533845.1_PDT001815759.1_genomic.fna	Salmonella_enterica	0.522	60.586 KB	26	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_535,thrA_4	2692	9,46:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_535	thrA	100	100	thrA_4	9,46	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Waedenswil		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPLX010000060.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12323300 SAMN36415662-rid18778373.denovo.060, whole genome shotgun sequence	12378..12815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPLX010000173.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12323300 SAMN36415662-rid18778373.guided.132, whole genome shotgun sequence	2279..2716	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.86	114 / 114	ABNPLX010000132.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12323300 SAMN36415662-rid18778373.denovo.135, whole genome shotgun sequence	2734..2847	enterobacteriales	Col440I	91.74	109 / 114	ABNPLX010000135.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12323300 SAMN36415662-rid18778373.denovo.138, whole genome shotgun sequence	2246..2354																																																											
GCA_032533865.1_PDT001815757.1_genomic.fna	Salmonella_enterica	0.5228	123.962 KB	14	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNPLY010000001.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323290 SAMN36415657-rid18778363.denovo.01, whole genome shotgun sequence	20801..21238	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNPLY010000082.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323290 SAMN36415657-rid18778363.guided.58, whole genome shotgun sequence	15473..15910	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNPLY010000065.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323290 SAMN36415657-rid18778363.denovo.68, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABNPLY010000063.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323290 SAMN36415657-rid18778363.denovo.66, whole genome shotgun sequence	3175..3285																																																avrA	ABNPLY010000007.1	153066..153935	99.425	870	0						
GCA_032533885.1_PDT001815756.1_genomic.fna	Salmonella_enterica	0.5231	62.02 KB	24	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	Col440I,ColpVC,IncI1-I(Alpha),p0111	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPLZ010000021.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323288 SAMN36415655-rid18778353.denovo.021, whole genome shotgun sequence	48243..48680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPLZ010000177.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323288 SAMN36415655-rid18778353.guided.074, whole genome shotgun sequence	7536..7973	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABNPLZ010000130.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323288 SAMN36415655-rid18778353.denovo.134, whole genome shotgun sequence	2246..2354	enterobacteriales	ColpVC	98.96	193 / 193	ABNPLZ010000144.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323288 SAMN36415655-rid18778353.denovo.148, whole genome shotgun sequence	805..997		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPLZ010000118.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323288 SAMN36415655-rid18778353.denovo.122, whole genome shotgun sequence	269..410		enterobacteriales	p0111	99.55	885 / 885	ABNPLZ010000095.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323288 SAMN36415655-rid18778353.denovo.099, whole genome shotgun sequence	1193..2077																																													
GCA_032533905.1_PDT001815754.1_genomic.fna	Salmonella_enterica	0.5233	80.89 KB	17	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	-:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNPMB010000003.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323149 SAMN36415635-rid18778343.denovo.003, whole genome shotgun sequence	52271..52708	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNPMB010000113.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323149 SAMN36415635-rid18778343.guided.044, whole genome shotgun sequence	16453..16890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	97.4	154 / 154	ABNPMB010000086.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12323149 SAMN36415635-rid18778343.denovo.088, whole genome shotgun sequence	1417..1570																																																						avrA	ABNPMB010000005.1	119903..120772	99.425	870	0						
GCA_032533925.1_PDT001815755.1_genomic.fna	Salmonella_enterica	0.5207	64.134 KB	28	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	-:g,s,t:-	4	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	-	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,s,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aph(6)-Id	100	837/837	ABNPMA010000020.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323286 SAMN36415636-rid18778673.denovo.020, whole genome shotgun sequence	61691..62527	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNPMA010000020.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323286 SAMN36415636-rid18778673.denovo.020, whole genome shotgun sequence	62527..63329	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPMA010000020.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323286 SAMN36415636-rid18778673.denovo.020, whole genome shotgun sequence	62527..63330	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPMA010000020.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323286 SAMN36415636-rid18778673.denovo.020, whole genome shotgun sequence	62527..63330	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPMA010000020.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323286 SAMN36415636-rid18778673.denovo.020, whole genome shotgun sequence	62527..63330	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNPMA010000027.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323286 SAMN36415636-rid18778673.denovo.027, whole genome shotgun sequence	12501..12938	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPMA010000173.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323286 SAMN36415636-rid18778673.guided.058, whole genome shotgun sequence	21252..22088	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNPMA010000173.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323286 SAMN36415636-rid18778673.guided.058, whole genome shotgun sequence	22088..22890	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPMA010000173.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323286 SAMN36415636-rid18778673.guided.058, whole genome shotgun sequence	22088..22891	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPMA010000173.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323286 SAMN36415636-rid18778673.guided.058, whole genome shotgun sequence	22088..22891	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPMA010000173.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323286 SAMN36415636-rid18778673.guided.058, whole genome shotgun sequence	22088..22891	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNPMA010000175.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323286 SAMN36415636-rid18778673.guided.079, whole genome shotgun sequence	16420..16857	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNPMA010000020.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323286 SAMN36415636-rid18778673.denovo.020, whole genome shotgun sequence	54799..55998	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPMA010000173.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323286 SAMN36415636-rid18778673.guided.058, whole genome shotgun sequence	14360..15559	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	ABNPMA010000112.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12323286 SAMN36415636-rid18778673.denovo.116, whole genome shotgun sequence	792..945																																																						avrA	ABNPMA010000005.1	39538..40407	98.966	870	0						
GCA_032533945.1_PDT001815753.1_genomic.fna	Salmonella_enterica	0.5216	225.555 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPMD010000001.1 Salmonella enterica strain PNUSAS362467 SAMN36415142-rid18778263.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPMD010000055.1 Salmonella enterica strain PNUSAS362467 SAMN36415142-rid18778263.guided.33, whole genome shotgun sequence	20567..21004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPMD010000020.1 Salmonella enterica strain PNUSAS362467 SAMN36415142-rid18778263.denovo.20, whole genome shotgun sequence	14681..15323	enterobacteriales	IncFII(S)	100	262 / 262	ABNPMD010000020.1 Salmonella enterica strain PNUSAS362467 SAMN36415142-rid18778263.denovo.20, whole genome shotgun sequence	30408..30669		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPMD010000022.1 Salmonella enterica strain PNUSAS362467 SAMN36415142-rid18778263.denovo.22, whole genome shotgun sequence	69658..69799																																									avrA	ABNPMD010000006.1	94133..95001	100	869	0						
GCA_032533965.1_PDT001815727.1_genomic.fna	Salmonella_enterica	0.5209	469.75 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPME010000001.1 Salmonella enterica strain PNUSAS362407 SAMN36414961-rid18777983.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPME010000027.1 Salmonella enterica strain PNUSAS362407 SAMN36414961-rid18777983.guided.18, whole genome shotgun sequence	9597..10034	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPME010000021.1 Salmonella enterica strain PNUSAS362407 SAMN36414961-rid18777983.denovo.23, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNPME010000022.1 Salmonella enterica strain PNUSAS362407 SAMN36414961-rid18777983.denovo.24, whole genome shotgun sequence	3387..3648																																																avrA	ABNPME010000014.1	39351..40220	99.54	870	0						
GCA_032534005.1_PDT001815726.1_genomic.fna	Salmonella_enterica	0.5218	474.546 KB	4	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPMF010000001.1 Salmonella enterica strain PNUSAS362390 SAMN36414956-rid18777973.denovo.01, whole genome shotgun sequence	624622..625059	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPMF010000027.1 Salmonella enterica strain PNUSAS362390 SAMN36414956-rid18777973.guided.22, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032534025.1_PDT001815725.1_genomic.fna	Salmonella_enterica	0.5212	476.918 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPMG010000001.1 Salmonella enterica strain PNUSAS362387 SAMN36414953-rid18777963.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPMG010000034.1 Salmonella enterica strain PNUSAS362387 SAMN36414953-rid18777963.guided.24, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPMG010000021.1 Salmonella enterica strain PNUSAS362387 SAMN36414953-rid18777963.denovo.23, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNPMG010000018.1 Salmonella enterica strain PNUSAS362387 SAMN36414953-rid18777963.denovo.19, whole genome shotgun sequence	4260..4521																																																avrA	ABNPMG010000002.1	506088..506957	99.54	870	0						
GCA_032534035.1_PDT001815724.1_genomic.fna	Salmonella_enterica	0.5208	178.444 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aadA1,aac(3)-VIa,aac(3)-VIa,sul2,sul1,sul1,sul2,sul2,tet(A),tet(C),tet(A),tet(C)	0		2	Col(pHAD28),IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPMH010000001.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.denovo.01, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNPMH010000040.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.denovo.40, whole genome shotgun sequence	12506..13408	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNPMH010000040.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.denovo.40, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNPMH010000063.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.guided.48, whole genome shotgun sequence	3575..4012	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNPMH010000064.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.guided.52, whole genome shotgun sequence	3505..4296	Spectinomycin, Streptomycin	JQ414041	aac(3)-VIa	99.89	903/903	ABNPMH010000070.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.guided.64, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aac(3)-VIa	100	903/903	ABNPMH010000071.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.guided.65, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	sul2	100	816/816	ABNPMH010000027.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.denovo.27, whole genome shotgun sequence	5050..5865	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNPMH010000040.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.denovo.40, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul1	100	840/840	ABNPMH010000062.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.guided.47, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	sul2	100	816/816	ABNPMH010000065.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.guided.53, whole genome shotgun sequence	3151..3966	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNPMH010000066.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.guided.54, whole genome shotgun sequence	3151..3966	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNPMH010000027.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.denovo.27, whole genome shotgun sequence	1674..2873	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNPMH010000053.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.denovo.61, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABNPMH010000067.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.guided.59, whole genome shotgun sequence	1064..2263	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNPMH010000068.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.guided.60, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNPMH010000048.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.denovo.51, whole genome shotgun sequence	371..501	enterobacteriales	IncX4	100	374 / 374	ABNPMH010000034.1 Salmonella enterica strain 23VA05CB03-L-S1 SAMN36414687-rid18777953.denovo.34, whole genome shotgun sequence	7852..8225																																																avrA	ABNPMH010000002.1	148340..149209	99.885	870	0						
GCA_032534065.1_PDT001815723.1_genomic.fna	Salmonella_enterica	0.5209	252.44 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aadA1,aac(3)-VIa,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		2	Col(pHAD28),IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPMI010000001.1 Salmonella enterica strain 23VA05CB03-L-S2 SAMN36414688-rid18777943.denovo.01, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNPMI010000035.1 Salmonella enterica strain 23VA05CB03-L-S2 SAMN36414688-rid18777943.denovo.35, whole genome shotgun sequence	12506..13408	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNPMI010000035.1 Salmonella enterica strain 23VA05CB03-L-S2 SAMN36414688-rid18777943.denovo.35, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNPMI010000057.1 Salmonella enterica strain 23VA05CB03-L-S2 SAMN36414688-rid18777943.guided.36, whole genome shotgun sequence	3801..4238	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNPMI010000062.1 Salmonella enterica strain 23VA05CB03-L-S2 SAMN36414688-rid18777943.guided.49, whole genome shotgun sequence	3505..4296	Spectinomycin, Streptomycin	JQ414041	aac(3)-VIa	100	903/903	ABNPMI010000063.1 Salmonella enterica strain 23VA05CB03-L-S2 SAMN36414688-rid18777943.guided.51, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	sul2	100	816/816	ABNPMI010000025.1 Salmonella enterica strain 23VA05CB03-L-S2 SAMN36414688-rid18777943.denovo.25, whole genome shotgun sequence	5050..5865	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNPMI010000035.1 Salmonella enterica strain 23VA05CB03-L-S2 SAMN36414688-rid18777943.denovo.35, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul2	100	816/816	ABNPMI010000060.1 Salmonella enterica strain 23VA05CB03-L-S2 SAMN36414688-rid18777943.guided.44, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNPMI010000061.1 Salmonella enterica strain 23VA05CB03-L-S2 SAMN36414688-rid18777943.guided.47, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABNPMI010000025.1 Salmonella enterica strain 23VA05CB03-L-S2 SAMN36414688-rid18777943.denovo.25, whole genome shotgun sequence	1674..2873	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNPMI010000048.1 Salmonella enterica strain 23VA05CB03-L-S2 SAMN36414688-rid18777943.denovo.56, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABNPMI010000060.1 Salmonella enterica strain 23VA05CB03-L-S2 SAMN36414688-rid18777943.guided.44, whole genome shotgun sequence	4544..5743	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNPMI010000064.1 Salmonella enterica strain 23VA05CB03-L-S2 SAMN36414688-rid18777943.guided.55, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNPMI010000043.1 Salmonella enterica strain 23VA05CB03-L-S2 SAMN36414688-rid18777943.denovo.48, whole genome shotgun sequence	371..501	enterobacteriales	IncX4	100	374 / 374	ABNPMI010000031.1 Salmonella enterica strain 23VA05CB03-L-S2 SAMN36414688-rid18777943.denovo.31, whole genome shotgun sequence	7852..8225																																																avrA	ABNPMI010000002.1	148340..149209	99.885	870	0						
GCA_032534085.1_PDT001815722.1_genomic.fna	Salmonella_enterica	0.5216	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPMJ010000001.1 Salmonella enterica strain 23VA06CB04-L-S1 SAMN36414689-rid18777933.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPMJ010000025.1 Salmonella enterica strain 23VA06CB04-L-S1 SAMN36414689-rid18777933.denovo.26, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPMJ010000025.1 Salmonella enterica strain 23VA06CB04-L-S1 SAMN36414689-rid18777933.denovo.26, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNPMJ010000043.1 Salmonella enterica strain 23VA06CB04-L-S1 SAMN36414689-rid18777933.denovo.49, whole genome shotgun sequence	93..908	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	X62115	aac(6')-Iaa	97.49	438/438	ABNPMJ010000053.1 Salmonella enterica strain 23VA06CB04-L-S1 SAMN36414689-rid18777933.guided.35, whole genome shotgun sequence	5089..5526	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPMJ010000054.1 Salmonella enterica strain 23VA06CB04-L-S1 SAMN36414689-rid18777933.guided.36, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPMJ010000054.1 Salmonella enterica strain 23VA06CB04-L-S1 SAMN36414689-rid18777933.guided.36, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNPMJ010000056.1 Salmonella enterica strain 23VA06CB04-L-S1 SAMN36414689-rid18777933.guided.47, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	X62115	sul1	100	840/840	ABNPMJ010000025.1 Salmonella enterica strain 23VA06CB04-L-S1 SAMN36414689-rid18777933.denovo.26, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPMJ010000054.1 Salmonella enterica strain 23VA06CB04-L-S1 SAMN36414689-rid18777933.guided.36, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPMJ010000025.1 Salmonella enterica strain 23VA06CB04-L-S1 SAMN36414689-rid18777933.denovo.26, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPMJ010000052.1 Salmonella enterica strain 23VA06CB04-L-S1 SAMN36414689-rid18777933.guided.34, whole genome shotgun sequence	6504..7703	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPMJ010000029.1 Salmonella enterica strain 23VA06CB04-L-S1 SAMN36414689-rid18777933.denovo.30, whole genome shotgun sequence	9109..9668																																																						avrA	ABNPMJ010000009.1	94091..94960	99.655	870	0						
GCA_032534105.1_PDT001815721.1_genomic.fna	Salmonella_enterica	0.5215	333.002 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPMK010000001.1 Salmonella enterica strain 23VA06CB04-L-S2 SAMN36414690-rid18777923.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPMK010000023.1 Salmonella enterica strain 23VA06CB04-L-S2 SAMN36414690-rid18777923.denovo.24, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPMK010000023.1 Salmonella enterica strain 23VA06CB04-L-S2 SAMN36414690-rid18777923.denovo.24, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNPMK010000042.1 Salmonella enterica strain 23VA06CB04-L-S2 SAMN36414690-rid18777923.denovo.48, whole genome shotgun sequence	93..908	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	X62115	aac(6')-Iaa	97.49	438/438	ABNPMK010000049.1 Salmonella enterica strain 23VA06CB04-L-S2 SAMN36414690-rid18777923.guided.29, whole genome shotgun sequence	12012..12449	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPMK010000052.1 Salmonella enterica strain 23VA06CB04-L-S2 SAMN36414690-rid18777923.guided.42, whole genome shotgun sequence	155..946	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPMK010000052.1 Salmonella enterica strain 23VA06CB04-L-S2 SAMN36414690-rid18777923.guided.42, whole genome shotgun sequence	155..946	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNPMK010000053.1 Salmonella enterica strain 23VA06CB04-L-S2 SAMN36414690-rid18777923.guided.46, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	X62115	sul1	100	840/840	ABNPMK010000023.1 Salmonella enterica strain 23VA06CB04-L-S2 SAMN36414690-rid18777923.denovo.24, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPMK010000052.1 Salmonella enterica strain 23VA06CB04-L-S2 SAMN36414690-rid18777923.guided.42, whole genome shotgun sequence	1451..2290	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPMK010000023.1 Salmonella enterica strain 23VA06CB04-L-S2 SAMN36414690-rid18777923.denovo.24, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPMK010000051.1 Salmonella enterica strain 23VA06CB04-L-S2 SAMN36414690-rid18777923.guided.34, whole genome shotgun sequence	7311..8510	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPMK010000027.1 Salmonella enterica strain 23VA06CB04-L-S2 SAMN36414690-rid18777923.denovo.28, whole genome shotgun sequence	9109..9668																																																						avrA	ABNPMK010000003.1	149828..150697	99.655	870	0						
GCA_032534125.1_PDT001815719.1_genomic.fna	Salmonella_enterica	0.5215	478.594 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPMM010000001.1 Salmonella enterica strain 23VA06CB05-L-S2 SAMN36414692-rid18777903.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPMM010000025.1 Salmonella enterica strain 23VA06CB05-L-S2 SAMN36414692-rid18777903.guided.19, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPMM010000017.1 Salmonella enterica strain 23VA06CB05-L-S2 SAMN36414692-rid18777903.denovo.18, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNPMM010000014.1 Salmonella enterica strain 23VA06CB05-L-S2 SAMN36414692-rid18777903.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNPMM010000002.1	553636..554505	99.54	870	0						
GCA_032534145.1_PDT001815720.1_genomic.fna	Salmonella_enterica	0.5212	489.888 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPML010000001.1 Salmonella enterica strain 23VA06CB05-L-S1 SAMN36414691-rid18777913.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPML010000026.1 Salmonella enterica strain 23VA06CB05-L-S1 SAMN36414691-rid18777913.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPML010000016.1 Salmonella enterica strain 23VA06CB05-L-S1 SAMN36414691-rid18777913.denovo.17, whole genome shotgun sequence	6839..7481	enterobacteriales	IncFII(S)	100	262 / 262	ABNPML010000017.1 Salmonella enterica strain 23VA06CB05-L-S1 SAMN36414691-rid18777913.denovo.19, whole genome shotgun sequence	3404..3665																																																avrA	ABNPML010000002.1	553636..554505	99.54	870	0						
GCA_032534165.1_PDT001815718.1_genomic.fna	Salmonella_enterica	0.5207	406.184 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPMN010000002.1 Salmonella enterica strain PNUSAS362388 SAMN36414954-rid18777893.denovo.02, whole genome shotgun sequence	288170..288607	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPMN010000029.1 Salmonella enterica strain PNUSAS362388 SAMN36414954-rid18777893.guided.20, whole genome shotgun sequence	12429..12866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPMN010000018.1 Salmonella enterica strain PNUSAS362388 SAMN36414954-rid18777893.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNPMN010000018.1 Salmonella enterica strain PNUSAS362388 SAMN36414954-rid18777893.denovo.18, whole genome shotgun sequence	12912..13173		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPMN010000015.1 Salmonella enterica strain PNUSAS362388 SAMN36414954-rid18777893.denovo.15, whole genome shotgun sequence	12820..12961																																									avrA	ABNPMN010000001.1	553028..553897	99.54	870	0						
GCA_032534185.1_PDT001815715.1_genomic.fna	Salmonella_enterica	0.5202	386.522 KB	5	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,ColRNAI	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPMS010000001.1 Salmonella enterica strain PNUSAS362367 SAMN36414950-rid18777863.denovo.01, whole genome shotgun sequence	791052..791489	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPMS010000037.1 Salmonella enterica strain PNUSAS362367 SAMN36414950-rid18777863.guided.25, whole genome shotgun sequence	5600..6037	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	ABNPMS010000025.1 Salmonella enterica strain PNUSAS362367 SAMN36414950-rid18777863.denovo.28, whole genome shotgun sequence	1189..1298	enterobacteriales	ColRNAI	90.83	109 / 130	ABNPMS010000023.1 Salmonella enterica strain PNUSAS362367 SAMN36414950-rid18777863.denovo.26, whole genome shotgun sequence	1011..1119																																																avrA	ABNPMS010000005.1	39463..40332	98.966	870	0						
GCA_032534205.1_PDT001815716.1_genomic.fna	Salmonella_enterica	0.521	252.247 KB	6	aroC_84,dnaN_76,hemD_38,hisD_16,purE_12,sucA_13,thrA_4	226	6,14:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCRY)	aroC	100	100	aroC_84	dnaN	100	100	dnaN_76	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	6,14	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Carrau		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPMQ010000001.1 Salmonella enterica strain PNUSAS362368 SAMN36414949-rid18777873.denovo.01, whole genome shotgun sequence	149034..149471	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPMQ010000072.1 Salmonella enterica strain PNUSAS362368 SAMN36414949-rid18777873.guided.36, whole genome shotgun sequence	9442..9879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	93.93	593 / 593	ABNPMQ010000033.1 Salmonella enterica strain PNUSAS362368 SAMN36414949-rid18777873.denovo.33, whole genome shotgun sequence	19995..20587																																																						avrA	ABNPMQ010000002.1	150232..151100	98.851	870	0						
GCA_032534225.1_PDT001815500.1_genomic.fna	Salmonella_enterica	0.5216	280.443 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPMR010000001.1 Salmonella enterica strain PNUSAS362289 SAMN36411701-rid18777813.denovo.01, whole genome shotgun sequence	480965..481402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPMR010000053.1 Salmonella enterica strain PNUSAS362289 SAMN36411701-rid18777813.guided.33, whole genome shotgun sequence	3392..3829	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	92.5	120 / 131	ABNPMR010000033.1 Salmonella enterica strain PNUSAS362289 SAMN36411701-rid18777813.denovo.36, whole genome shotgun sequence	2266..2384	enterobacteriales	IncFIB(S)	100	643 / 643	ABNPMR010000016.1 Salmonella enterica strain PNUSAS362289 SAMN36411701-rid18777813.denovo.16, whole genome shotgun sequence	44668..45310		enterobacteriales	IncFII(S)	100	262 / 262	ABNPMR010000016.1 Salmonella enterica strain PNUSAS362289 SAMN36411701-rid18777813.denovo.16, whole genome shotgun sequence	60395..60656																																									avrA	ABNPMR010000007.1	98430..99299	99.885	870	0						
GCA_032534245.1_PDT001815491.1_genomic.fna	Salmonella_enterica	0.521	489.739 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPMV010000001.1 Salmonella enterica strain PNUSAS362295 SAMN36411738-rid18777743.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPMV010000023.1 Salmonella enterica strain PNUSAS362295 SAMN36411738-rid18777743.guided.14, whole genome shotgun sequence	38228..38665	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPMV010000012.1 Salmonella enterica strain PNUSAS362295 SAMN36411738-rid18777743.denovo.13, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNPMV010000012.1 Salmonella enterica strain PNUSAS362295 SAMN36411738-rid18777743.denovo.13, whole genome shotgun sequence	4416..4677																																																avrA	ABNPMV010000002.1	553187..554056	99.54	870	0						
GCA_032534265.1_PDT001815499.1_genomic.fna	Salmonella_enterica	0.5222	347.445 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	0		4	ColRNAI,IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPMT010000004.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPMT010000015.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.denovo.15, whole genome shotgun sequence	72248..73084	Streptomycin	M28829	aph(3'')-Ib	100	529/804	ABNPMT010000015.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.denovo.15, whole genome shotgun sequence	73927..74455	Streptomycin	AF321551	aph(3'')-Ib	99.2957746478873	284/804	ABNPMT010000015.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.denovo.15, whole genome shotgun sequence	73084..73365	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNPMT010000045.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.guided.28, whole genome shotgun sequence	19535..20371	Streptomycin	M28829	aph(3'')-Ib	100	529/804	ABNPMT010000045.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.guided.28, whole genome shotgun sequence	18164..18692	Streptomycin	AF321551	aph(3'')-Ib	99.2957746478873	284/804	ABNPMT010000045.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.guided.28, whole genome shotgun sequence	19254..19535	Streptomycin	AF321551	aac(6')-Iaa	99.77	438/438	ABNPMT010000047.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.guided.32, whole genome shotgun sequence	9670..10107	Amikacin, Tobramycin	NC_003197	blaTEM-1B	99.88	861/861	ABNPMT010000015.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.denovo.15, whole genome shotgun sequence	80972..81832	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	99.88	861/861	ABNPMT010000045.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.guided.28, whole genome shotgun sequence	10787..11647	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNPMT010000015.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.denovo.15, whole genome shotgun sequence	74516..75331	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNPMT010000045.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.guided.28, whole genome shotgun sequence	17288..18103	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNPMT010000015.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.denovo.15, whole genome shotgun sequence	78844..80043	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPMT010000045.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.guided.28, whole genome shotgun sequence	12576..13775	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNPMT010000015.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.denovo.15, whole genome shotgun sequence	73434..73907	Trimethoprim	AF393510	dfrA14	100	474/474	ABNPMT010000045.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.guided.28, whole genome shotgun sequence	18712..19185	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	ColRNAI	90.08	131 / 130	ABNPMT010000030.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.denovo.34, whole genome shotgun sequence	3010..3140	enterobacteriales	IncFIB(S)	100	643 / 643	ABNPMT010000016.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.denovo.16, whole genome shotgun sequence	44751..45393		enterobacteriales	IncFII(S)	100	262 / 262	ABNPMT010000016.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.denovo.16, whole genome shotgun sequence	29405..29666		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNPMT010000015.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.denovo.15, whole genome shotgun sequence	89309..89450		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNPMT010000045.1 Salmonella enterica strain PNUSAS362296 SAMN36411737-rid18777803.guided.28, whole genome shotgun sequence	3169..3310																											avrA	ABNPMT010000001.1	446537..447405	100	869	0						
GCA_032534285.1_PDT001815487.1_genomic.fna	Salmonella_enterica	0.5205	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPMX010000001.1 Salmonella enterica strain PNUSAS362292 SAMN36411697-rid18777713.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPMX010000027.1 Salmonella enterica strain PNUSAS362292 SAMN36411697-rid18777713.guided.17, whole genome shotgun sequence	8579..9016	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPMX010000012.1 Salmonella enterica strain PNUSAS362292 SAMN36411697-rid18777713.denovo.13, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNPMX010000012.1 Salmonella enterica strain PNUSAS362292 SAMN36411697-rid18777713.denovo.13, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNPMX010000013.1 Salmonella enterica strain PNUSAS362292 SAMN36411697-rid18777713.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNPMX010000002.1	553362..554231	99.54	870	0						
GCA_032534305.1_PDT001815488.1_genomic.fna	Salmonella_enterica	0.5208	478.499 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPMW010000001.1 Salmonella enterica strain PNUSAS362297 SAMN36411736-rid18777583.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPMW010000024.1 Salmonella enterica strain PNUSAS362297 SAMN36411736-rid18777583.guided.12, whole genome shotgun sequence	27687..28124	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPMW010000012.1 Salmonella enterica strain PNUSAS362297 SAMN36411736-rid18777583.denovo.14, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNPMW010000016.1 Salmonella enterica strain PNUSAS362297 SAMN36411736-rid18777583.denovo.19, whole genome shotgun sequence	3446..3707																																																avrA	ABNPMW010000002.1	553636..554505	99.54	870	0						
GCA_032534325.1_PDT001815485.1_genomic.fna	Salmonella_enterica	0.5213	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPMY010000001.1 Salmonella enterica strain PNUSAS362293 SAMN36411700-rid18777693.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPMY010000024.1 Salmonella enterica strain PNUSAS362293 SAMN36411700-rid18777693.guided.16, whole genome shotgun sequence	18819..19256	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPMY010000012.1 Salmonella enterica strain PNUSAS362293 SAMN36411700-rid18777693.denovo.12, whole genome shotgun sequence	40558..41200	enterobacteriales	IncFII(S)	100	262 / 262	ABNPMY010000015.1 Salmonella enterica strain PNUSAS362293 SAMN36411700-rid18777693.denovo.18, whole genome shotgun sequence	3446..3707																																																avrA	ABNPMY010000002.1	553642..554511	99.54	870	0						
GCA_032534345.1_PDT001815483.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPNB010000001.1 Salmonella enterica strain PNUSAS362294 SAMN36411696-rid18777573.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPNB010000024.1 Salmonella enterica strain PNUSAS362294 SAMN36411696-rid18777573.guided.15, whole genome shotgun sequence	25213..25650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPNB010000012.1 Salmonella enterica strain PNUSAS362294 SAMN36411696-rid18777573.denovo.12, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNPNB010000015.1 Salmonella enterica strain PNUSAS362294 SAMN36411696-rid18777573.denovo.17, whole genome shotgun sequence	3446..3707																																																avrA	ABNPNB010000002.1	553636..554505	99.54	870	0						
GCA_032534385.1_PDT001815481.1_genomic.fna	Salmonella_enterica	0.5214	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPND010000001.1 Salmonella enterica strain PNUSAS362288 SAMN36411702-rid18777663.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPND010000028.1 Salmonella enterica strain PNUSAS362288 SAMN36411702-rid18777663.guided.20, whole genome shotgun sequence	2902..3339	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPND010000012.1 Salmonella enterica strain PNUSAS362288 SAMN36411702-rid18777663.denovo.12, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNPND010000012.1 Salmonella enterica strain PNUSAS362288 SAMN36411702-rid18777663.denovo.12, whole genome shotgun sequence	53083..53344																																																avrA	ABNPND010000002.1	553561..554430	99.54	870	0						
GCA_032534505.1_PDT001815717.1_genomic.fna	Salmonella_enterica	0.5226	331.735 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPMO010000001.1 Salmonella enterica strain PNUSAS362389 SAMN36414955-rid18777883.denovo.01, whole genome shotgun sequence	789913..790350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPMO010000032.1 Salmonella enterica strain PNUSAS362389 SAMN36414955-rid18777883.guided.17, whole genome shotgun sequence	32266..32703	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.45	193 / 193	ABNPMO010000024.1 Salmonella enterica strain PNUSAS362389 SAMN36414955-rid18777883.denovo.27, whole genome shotgun sequence	1532..1724																																																						avrA	ABNPMO010000008.1	39445..40314	98.966	870	0						
GCA_032534525.1_PDT001815497.1_genomic.fna	Salmonella_enterica	0.5228	397.494 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPMU010000001.1 Salmonella enterica strain PNUSAS362291 SAMN36411698-rid18777793.denovo.01, whole genome shotgun sequence	790294..790731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPMU010000026.1 Salmonella enterica strain PNUSAS362291 SAMN36411698-rid18777793.guided.15, whole genome shotgun sequence	14253..14690	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPMU010000005.1	183141..184010	98.966	870	0						
GCA_032534545.1_PDT001815712.1_genomic.fna	Salmonella_enterica	0.5224	401.544 KB	5	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,aadA2b,blaCARB-2,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPMP010000004.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.denovo.04, whole genome shotgun sequence	352879..353316	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNPMP010000027.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.denovo.29, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNPMP010000042.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.guided.17, whole genome shotgun sequence	30356..30793	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNPMP010000047.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.guided.38, whole genome shotgun sequence	2236..3015	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABNPMP010000048.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.guided.39, whole genome shotgun sequence	2236..3015	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNPMP010000027.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.denovo.29, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNPMP010000047.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.guided.38, whole genome shotgun sequence	1240..2106	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNPMP010000048.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.guided.39, whole genome shotgun sequence	1240..2106	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNPMP010000024.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.denovo.26, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNPMP010000046.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.guided.37, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNPMP010000022.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.denovo.24, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNPMP010000044.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.guided.33, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNPMP010000027.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.denovo.29, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNPMP010000047.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.guided.38, whole genome shotgun sequence	324..980	Ciprofloxacin	AY070235	qnrA1	99.85	657/657	ABNPMP010000048.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.guided.39, whole genome shotgun sequence	324..980	Ciprofloxacin	AY070235	sul1	100	840/840	ABNPMP010000034.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.denovo.43, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPMP010000050.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.guided.42, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNPMP010000022.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.denovo.24, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNPMP010000045.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.guided.36, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNPMP010000022.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.denovo.24, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNPMP010000045.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.guided.36, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNPMP010000021.1 Salmonella enterica strain PNUSAS362312 SAMN36412822-rid18777833.denovo.23, whole genome shotgun sequence	8317..8567																																																						avrA	ABNPMP010000002.1	552945..553814	99.77	870	0						
GCA_032534585.1_PDT001815484.1_genomic.fna	Salmonella_enterica	0.5209	509.544 KB	4	aroC_104,dnaN_100,hemD_54,hisD_78,purE_104,sucA_9,thrA_48	292	8:z4,z24:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_104	dnaN	100	100	dnaN_100	hemD	100	100	hemD_54	hisD	100	100	hisD_78	purE	100	100	purE_104	sucA	100	100	sucA_9	thrA	100	100	thrA_48	8	z4,z24	-	Salmonella enterica subspecies enterica (subspecies I)	Albany or Duesseldorf	The predicted serotypes share the same general formula: 8:z4,z24:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPMZ010000002.1 Salmonella enterica strain 22MD09GT04-S SAMN36411735-rid18777683.denovo.02, whole genome shotgun sequence	483343..483780	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPMZ010000027.1 Salmonella enterica strain 22MD09GT04-S SAMN36411735-rid18777683.guided.21, whole genome shotgun sequence	53..490	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNPMZ010000017.1 Salmonella enterica strain 22MD09GT04-S SAMN36411735-rid18777683.denovo.19, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPMZ010000026.1 Salmonella enterica strain 22MD09GT04-S SAMN36411735-rid18777683.guided.20, whole genome shotgun sequence	1011..2216	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPMZ010000001.1	145655..146524	99.08	870	0						
GCA_032534605.1_PDT001815482.1_genomic.fna	Salmonella_enterica	0.5218	347.445 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPNC010000004.1 Salmonella enterica strain PNUSAS362290 SAMN36411699-rid18777673.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPNC010000042.1 Salmonella enterica strain PNUSAS362290 SAMN36411699-rid18777673.guided.30, whole genome shotgun sequence	2461..2898	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPNC010000015.1 Salmonella enterica strain PNUSAS362290 SAMN36411699-rid18777673.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNPNC010000015.1 Salmonella enterica strain PNUSAS362290 SAMN36411699-rid18777673.denovo.15, whole genome shotgun sequence	30407..30668		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNPNC010000017.1 Salmonella enterica strain PNUSAS362290 SAMN36411699-rid18777673.denovo.17, whole genome shotgun sequence	69852..69993																																									avrA	ABNPNC010000001.1	446743..447611	100	869	0						
GCA_032534615.1_PDT001815433.1_genomic.fna	Salmonella_enterica	0.5194	268.733 KB	6	aroC_3,dnaN_3!,dnaN_3!,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	Unknown	4:f,g,s:-	5	aac(6')-Iaa,aadA7,aadA7,aac(6')-Iaa,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3!	dnaN	100	100	dnaN_3!	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPNK010000001.1 Salmonella enterica strain PNUSAS362115 SAMN36403365-rid18777493.denovo.01, whole genome shotgun sequence	486095..486532	Amikacin, Tobramycin	NC_003197	aadA7	99	798/798	ABNPNK010000013.1 Salmonella enterica strain PNUSAS362115 SAMN36403365-rid18777493.denovo.13, whole genome shotgun sequence	54487..55284	Spectinomycin, Streptomycin	AF224733	aadA7	99	798/798	ABNPNK010000039.1 Salmonella enterica strain PNUSAS362115 SAMN36403365-rid18777493.guided.26, whole genome shotgun sequence	33517..34314	Spectinomycin, Streptomycin	AF224733	aac(6')-Iaa	97.95	438/438	ABNPNK010000040.1 Salmonella enterica strain PNUSAS362115 SAMN36403365-rid18777493.guided.31, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNPNK010000008.1 Salmonella enterica strain PNUSAS362115 SAMN36403365-rid18777493.denovo.08, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNPNK010000041.1 Salmonella enterica strain PNUSAS362115 SAMN36403365-rid18777493.guided.32, whole genome shotgun sequence	13429..13851	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNPNK010000013.1 Salmonella enterica strain PNUSAS362115 SAMN36403365-rid18777493.denovo.13, whole genome shotgun sequence	55789..56628	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPNK010000039.1 Salmonella enterica strain PNUSAS362115 SAMN36403365-rid18777493.guided.26, whole genome shotgun sequence	34819..35658	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPNK010000013.1 Salmonella enterica strain PNUSAS362115 SAMN36403365-rid18777493.denovo.13, whole genome shotgun sequence	65924..67123	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPNK010000043.1 Salmonella enterica strain PNUSAS362115 SAMN36403365-rid18777493.guided.36, whole genome shotgun sequence	540..1739	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	ABNPNK010000002.1	67021..67890	99.195	870	0						
GCA_032534645.1_PDT001815432.1_genomic.fna	Salmonella_enterica	0.5223	109.439 KB	12	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPNL010000033.1 Salmonella enterica strain PNUSAS362122 SAMN36403477-rid18777483.denovo.33, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNPNL010000074.1 Salmonella enterica strain PNUSAS362122 SAMN36403477-rid18777483.guided.52, whole genome shotgun sequence	10144..10581	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABNPNL010000031.1 Salmonella enterica strain PNUSAS362122 SAMN36403477-rid18777483.denovo.31, whole genome shotgun sequence	26921..27180																																																																	
GCA_032534665.1_PDT001815431.1_genomic.fna	Salmonella_enterica	0.5224	328.613 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPNM010000001.1 Salmonella enterica strain PNUSAS362119 SAMN36403362-rid18777473.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNPNM010000036.1 Salmonella enterica strain PNUSAS362119 SAMN36403362-rid18777473.guided.24, whole genome shotgun sequence	4702..5139	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPNM010000002.1	149828..150697	99.655	870	0						
GCA_032534685.1_PDT001815430.1_genomic.fna	Salmonella_enterica	0.5212	185.93 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPNN010000001.1 Salmonella enterica strain PNUSAS362124 SAMN36403475-rid18777463.denovo.01, whole genome shotgun sequence	381649..382086	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPNN010000043.1 Salmonella enterica strain PNUSAS362124 SAMN36403475-rid18777463.guided.22, whole genome shotgun sequence	11119..11556	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNPNN010000002.1	218734..219602	99.77	870	0						
GCA_032534705.1_PDT001815426.1_genomic.fna	Salmonella_enterica	0.5222	517.418 KB	4	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPNP010000005.1 Salmonella enterica strain PNUSAS361717 SAMN36404061-rid18777423.denovo.05, whole genome shotgun sequence	252456..252893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPNP010000025.1 Salmonella enterica strain PNUSAS361717 SAMN36404061-rid18777423.denovo.27, whole genome shotgun sequence	5973..6809	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNPNP010000025.1 Salmonella enterica strain PNUSAS361717 SAMN36404061-rid18777423.denovo.27, whole genome shotgun sequence	6809..7611	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPNP010000025.1 Salmonella enterica strain PNUSAS361717 SAMN36404061-rid18777423.denovo.27, whole genome shotgun sequence	6809..7612	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPNP010000025.1 Salmonella enterica strain PNUSAS361717 SAMN36404061-rid18777423.denovo.27, whole genome shotgun sequence	6809..7612	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPNP010000025.1 Salmonella enterica strain PNUSAS361717 SAMN36404061-rid18777423.denovo.27, whole genome shotgun sequence	6809..7612	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNPNP010000037.1 Salmonella enterica strain PNUSAS361717 SAMN36404061-rid18777423.guided.23, whole genome shotgun sequence	20024..20461	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPNP010000039.1 Salmonella enterica strain PNUSAS361717 SAMN36404061-rid18777423.guided.30, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNPNP010000039.1 Salmonella enterica strain PNUSAS361717 SAMN36404061-rid18777423.guided.30, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPNP010000039.1 Salmonella enterica strain PNUSAS361717 SAMN36404061-rid18777423.guided.30, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPNP010000039.1 Salmonella enterica strain PNUSAS361717 SAMN36404061-rid18777423.guided.30, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPNP010000039.1 Salmonella enterica strain PNUSAS361717 SAMN36404061-rid18777423.guided.30, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNPNP010000028.1 Salmonella enterica strain PNUSAS361717 SAMN36404061-rid18777423.denovo.33, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPNP010000040.1 Salmonella enterica strain PNUSAS361717 SAMN36404061-rid18777423.guided.32, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNPNP010000030.1 Salmonella enterica strain PNUSAS361717 SAMN36404061-rid18777423.denovo.35, whole genome shotgun sequence	805..997																																																						avrA	ABNPNP010000003.1	525201..526070	99.655	870	0						
GCA_032534725.1_PDT001815427.1_genomic.fna	Salmonella_enterica	0.5217	393.01 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNPNO010000001.1 Salmonella enterica strain PNUSAS362006 SAMN36403530-rid18777433.denovo.01, whole genome shotgun sequence	512882..513319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNPNO010000037.1 Salmonella enterica strain PNUSAS362006 SAMN36403530-rid18777433.guided.25, whole genome shotgun sequence	10164..10601	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNPNO010000028.1 Salmonella enterica strain PNUSAS362006 SAMN36403530-rid18777433.denovo.31, whole genome shotgun sequence	557..687																																																						avrA	ABNPNO010000009.1	130895..131764	99.54	870	0						
GCA_032534765.1_PDT001815424.1_genomic.fna	Salmonella_enterica	0.5217	341.373 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	ColRNAI,IncFIB(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPNR010000003.1 Salmonella enterica strain PNUSAS361716 SAMN36404058-rid18777403.denovo.03, whole genome shotgun sequence	68365..68802	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPNR010000069.1 Salmonella enterica strain PNUSAS361716 SAMN36404058-rid18777403.guided.30, whole genome shotgun sequence	14857..15294	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.83	109 / 130	ABNPNR010000033.1 Salmonella enterica strain PNUSAS361716 SAMN36404058-rid18777403.denovo.36, whole genome shotgun sequence	1015..1123	enterobacteriales	IncFIB(S)	100	574 / 643	ABNPNR010000055.1 Salmonella enterica strain PNUSAS361716 SAMN36404058-rid18777403.denovo.58, whole genome shotgun sequence	1..574																																																avrA	ABNPNR010000004.1	401351..402219	100	869	0						
GCA_032534785.1_PDT001815423.1_genomic.fna	Salmonella_enterica	0.5208	178.188 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(pCRY),IncI1-I(Alpha),IncP1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPNS010000004.1 Salmonella enterica strain PNUSAS361715 SAMN36404062-rid18777393.denovo.004, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPNS010000101.1 Salmonella enterica strain PNUSAS361715 SAMN36404062-rid18777393.guided.045, whole genome shotgun sequence	6939..7376	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPNS010000069.1 Salmonella enterica strain PNUSAS361715 SAMN36404062-rid18777393.denovo.072, whole genome shotgun sequence	917..1559	enterobacteriales	IncFII(pCRY)	95.6	591 / 593	ABNPNS010000037.1 Salmonella enterica strain PNUSAS361715 SAMN36404062-rid18777393.denovo.038, whole genome shotgun sequence	18571..19161		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPNS010000067.1 Salmonella enterica strain PNUSAS361715 SAMN36404062-rid18777393.denovo.070, whole genome shotgun sequence	239..380		enterobacteriales	IncP1	98.52	745 / 745	ABNPNS010000050.1 Salmonella enterica strain PNUSAS361715 SAMN36404062-rid18777393.denovo.053, whole genome shotgun sequence	4696..5440																																		avrA	ABNPNS010000014.1	39472..40340	100	869	0						
GCA_032534805.1_PDT001815422.1_genomic.fna	Salmonella_enterica	0.521	207.053 KB	9	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPNT010000005.1 Salmonella enterica strain PNUSAS361718 SAMN36404059-rid18777383.denovo.05, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPNT010000062.1 Salmonella enterica strain PNUSAS361718 SAMN36404059-rid18777383.guided.29, whole genome shotgun sequence	25087..25524	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNPNT010000038.1 Salmonella enterica strain PNUSAS361718 SAMN36404059-rid18777383.denovo.41, whole genome shotgun sequence	3216..3749																																																						avrA	ABNPNT010000024.1	39342..40211	99.425	870	0						
GCA_032534825.1_PDT001815413.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPNU010000001.1 Salmonella enterica strain PNUSAS362164 SAMN36405425-rid18777293.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPNU010000022.1 Salmonella enterica strain PNUSAS362164 SAMN36405425-rid18777293.guided.10, whole genome shotgun sequence	40708..41145	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPNU010000011.1 Salmonella enterica strain PNUSAS362164 SAMN36405425-rid18777293.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNPNU010000015.1 Salmonella enterica strain PNUSAS362164 SAMN36405425-rid18777293.denovo.18, whole genome shotgun sequence	3356..3617																																																avrA	ABNPNU010000002.1	553636..554505	99.54	870	0						
GCA_032534845.1_PDT001815420.1_genomic.fna	Salmonella_enterica	0.5213	401.723 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPNV010000004.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.denovo.04, whole genome shotgun sequence	159428..159865	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPNV010000018.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.denovo.18, whole genome shotgun sequence	24821..25657	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNPNV010000018.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.denovo.18, whole genome shotgun sequence	24019..24821	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNPNV010000030.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.guided.23, whole genome shotgun sequence	813..1250	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPNV010000034.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.guided.32, whole genome shotgun sequence	1818..2654	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNPNV010000034.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.guided.32, whole genome shotgun sequence	1016..1818	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNPNV010000035.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.guided.33, whole genome shotgun sequence	1818..2654	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNPNV010000035.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.guided.33, whole genome shotgun sequence	1016..1818	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNPNV010000021.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.denovo.22, whole genome shotgun sequence	5202..6347	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNPNV010000024.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.denovo.27, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNPNV010000024.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.denovo.27, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNPNV010000024.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.denovo.27, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNPNV010000032.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.guided.29, whole genome shotgun sequence	2299..3444	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNPNV010000037.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.guided.35, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNPNV010000037.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.guided.35, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNPNV010000037.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.guided.35, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNPNV010000018.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.denovo.18, whole genome shotgun sequence	28793..30006	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNPNV010000033.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.guided.30, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNPNV010000018.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.denovo.18, whole genome shotgun sequence	23143..23958	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNPNV010000034.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.guided.32, whole genome shotgun sequence	140..955	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNPNV010000035.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.guided.33, whole genome shotgun sequence	140..955	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNPNV010000018.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.denovo.18, whole genome shotgun sequence	26918..28192	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNPNV010000036.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.guided.34, whole genome shotgun sequence	234..1508	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																											enterobacteriales	IncC	100	417 / 417	ABNPNV010000016.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.denovo.16, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNPNV010000015.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.denovo.15, whole genome shotgun sequence	29712..29971		enterobacteriales	IncX1	98.66	374 / 374	ABNPNV010000015.1 Salmonella enterica strain PNUSAS362150 SAMN36405417-rid18777363.denovo.15, whole genome shotgun sequence	65566..65939																																									avrA	ABNPNV010000007.1	173544..174412	99.54	870	0						
GCA_032534865.1_PDT001815412.1_genomic.fna	Salmonella_enterica	0.5217	411.847 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_690	3492	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_690	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNPNW010000001.1 Salmonella enterica strain PNUSAS362132 SAMN36404997-rid18777283.denovo.01, whole genome shotgun sequence	177317..177754	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNPNW010000027.1 Salmonella enterica strain PNUSAS362132 SAMN36404997-rid18777283.guided.15, whole genome shotgun sequence	35834..36271	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPNW010000002.1	563786..564655	99.77	870	0						
GCA_032534885.1_PDT001815410.1_genomic.fna	Salmonella_enterica	0.5206	230.072 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPNZ010000001.1 Salmonella enterica strain PNUSAS362126 SAMN36404988-rid18777263.denovo.01, whole genome shotgun sequence	162599..163036	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPNZ010000059.1 Salmonella enterica strain PNUSAS362126 SAMN36404988-rid18777263.guided.42, whole genome shotgun sequence	2294..2731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.84	516 / 643	ABNPNZ010000046.1 Salmonella enterica strain PNUSAS362126 SAMN36404988-rid18777263.denovo.49, whole genome shotgun sequence	1304..1819	enterobacteriales	IncFII(S)	100	262 / 262	ABNPNZ010000039.1 Salmonella enterica strain PNUSAS362126 SAMN36404988-rid18777263.denovo.41, whole genome shotgun sequence	2331..2592		enterobacteriales	IncX1	98.93	374 / 374	ABNPNZ010000027.1 Salmonella enterica strain PNUSAS362126 SAMN36404988-rid18777263.denovo.28, whole genome shotgun sequence	32011..32384																																									avrA	ABNPNZ010000015.1	39460..40329	99.54	870	0						
GCA_032534905.1_PDT001815411.1_genomic.fna	Salmonella_enterica	0.5204	478.022 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	ColRNAI,IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPNX010000001.1 Salmonella enterica strain PNUSAS362159 SAMN36405419-rid18777273.denovo.01, whole genome shotgun sequence	17178..17615	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPNX010000034.1 Salmonella enterica strain PNUSAS362159 SAMN36405419-rid18777273.guided.24, whole genome shotgun sequence	4926..5363	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABNPNX010000026.1 Salmonella enterica strain PNUSAS362159 SAMN36405419-rid18777273.denovo.29, whole genome shotgun sequence	4022..4152	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPNX010000018.1 Salmonella enterica strain PNUSAS362159 SAMN36405419-rid18777273.denovo.19, whole genome shotgun sequence	34370..35012		enterobacteriales	IncFII(S)	100	262 / 262	ABNPNX010000024.1 Salmonella enterica strain PNUSAS362159 SAMN36405419-rid18777273.denovo.27, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.66	374 / 374	ABNPNX010000019.1 Salmonella enterica strain PNUSAS362159 SAMN36405419-rid18777273.denovo.20, whole genome shotgun sequence	30550..30923																																		avrA	ABNPNX010000003.1	505833..506702	99.54	870	0						
GCA_032534925.1_PDT001815409.1_genomic.fna	Salmonella_enterica	0.5216	324.431 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPNY010000001.1 Salmonella enterica strain PNUSAS362147 SAMN36405414-rid18777253.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPNY010000037.1 Salmonella enterica strain PNUSAS362147 SAMN36405414-rid18777253.guided.22, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPNY010000016.1 Salmonella enterica strain PNUSAS362147 SAMN36405414-rid18777253.denovo.16, whole genome shotgun sequence	48399..49041	enterobacteriales	IncFII(S)	100	262 / 262	ABNPNY010000016.1 Salmonella enterica strain PNUSAS362147 SAMN36405414-rid18777253.denovo.16, whole genome shotgun sequence	64126..64387																																																avrA	ABNPNY010000002.1	209366..210235	99.885	870	0						
GCA_032534945.1_PDT001815407.1_genomic.fna	Salmonella_enterica	0.5203	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNPOA010000011.1 Salmonella enterica strain PNUSAS362151 SAMN36405422-rid18777233.denovo.11, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNPOA010000053.1 Salmonella enterica strain PNUSAS362151 SAMN36405422-rid18777233.guided.43, whole genome shotgun sequence	3815..4249	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032535085.1_PDT001815399.1_genomic.fna	Salmonella_enterica	0.5205	358.327 KB	5	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPOD010000001.1 Salmonella enterica strain PNUSAS362308 SAMN36407979-rid18777153.denovo.01, whole genome shotgun sequence	599965..600402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPOD010000044.1 Salmonella enterica strain PNUSAS362308 SAMN36407979-rid18777153.guided.27, whole genome shotgun sequence	12809..13246	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPOD010000018.1 Salmonella enterica strain PNUSAS362308 SAMN36407979-rid18777153.denovo.19, whole genome shotgun sequence	29596..30238	enterobacteriales	IncFII(S)	100	262 / 262	ABNPOD010000018.1 Salmonella enterica strain PNUSAS362308 SAMN36407979-rid18777153.denovo.19, whole genome shotgun sequence	45323..45584																																																avrA	ABNPOD010000005.1	174642..175511	99.885	870	0						
GCA_032535105.1_PDT001815397.1_genomic.fna	Salmonella_enterica	0.5203	192.081 KB	9	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,floR,floR,qnrS1,qnrS1,sul2,sul2,tet(B),tet(B),tet(A),tet(A),tet(A),tet(A),dfrA14,dfrA14	0		2	Col440I,p0111	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPOF010000008.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.denovo.08, whole genome shotgun sequence	145199..145636	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNPOF010000053.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.denovo.61, whole genome shotgun sequence	1233..2063	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	ABNPOF010000053.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.denovo.61, whole genome shotgun sequence	2069..2872	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNPOF010000080.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.guided.49, whole genome shotgun sequence	3719..4156	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNPOF010000085.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.guided.70, whole genome shotgun sequence	37..867	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	ABNPOF010000086.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.guided.71, whole genome shotgun sequence	1110..1913	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNPOF010000053.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.denovo.61, whole genome shotgun sequence	142..1002	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNPOF010000085.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.guided.70, whole genome shotgun sequence	1098..1958	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.11	1214/1215	ABNPOF010000046.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.denovo.50, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNPOF010000084.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.guided.59, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNPOF010000048.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.denovo.53, whole genome shotgun sequence	3598..4254	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNPOF010000081.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.guided.52, whole genome shotgun sequence	1042..1698	Ciprofloxacin	AB187515	sul2	100	816/816	ABNPOF010000053.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.denovo.61, whole genome shotgun sequence	2933..3748	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNPOF010000086.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.guided.71, whole genome shotgun sequence	234..1049	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNPOF010000042.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.denovo.44, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPOF010000078.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.guided.43, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	99.92	1200/1200	ABNPOF010000082.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.guided.57, whole genome shotgun sequence	650..1849	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPOF010000083.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.guided.58, whole genome shotgun sequence	650..1849	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1275/1275	ABNPOF010000087.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.guided.73, whole genome shotgun sequence	575..1849	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNPOF010000088.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.guided.74, whole genome shotgun sequence	575..1849	Doxycycline, Tetracycline	AF534183	dfrA14	100	474/474	ABNPOF010000063.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.denovo.76, whole genome shotgun sequence	6..479	Trimethoprim	KF921535	dfrA14	100	474/474	ABNPOF010000089.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.guided.75, whole genome shotgun sequence	1217..1690	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col440I	92.98	114 / 114	ABNPOF010000062.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.denovo.72, whole genome shotgun sequence	571..684	enterobacteriales	p0111	98.64	885 / 885	ABNPOF010000041.1 Salmonella enterica strain PNUSAS362314 SAMN36407976-rid18777133.denovo.42, whole genome shotgun sequence	2935..3819																																																avrA	ABNPOF010000001.1	434665..435534	99.885	870	0						
GCA_032535145.1_PDT001815398.1_genomic.fna	Salmonella_enterica	0.5201	141.184 KB	11	aroC_140,dnaN_105,hemD_85,hisD_93,purE_14,sucA_10,thrA_3	440	-:f,g:-	4	aac(6')-Iaa,aadA7,aac(6')-Iaa,aadA7,sul1,sul1,tet(B),tet(B)	1	parC_p.T57S	2	IncHI2,IncHI2A	aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_85	hisD	100	100	hisD_93	purE	100	100	purE_14	sucA	100	100	sucA_10	thrA	100	100	thrA_3	-	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPOE010000013.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309769 SAMN36407775-rid18777143.denovo.13, whole genome shotgun sequence	89673..90110	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	ABNPOE010000032.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309769 SAMN36407775-rid18777143.denovo.32, whole genome shotgun sequence	6195..6992	Spectinomycin, Streptomycin	AF224733	aac(6')-Iaa	97.95	438/438	ABNPOE010000083.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309769 SAMN36407775-rid18777143.guided.47, whole genome shotgun sequence	14245..14682	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	ABNPOE010000085.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309769 SAMN36407775-rid18777143.guided.54, whole genome shotgun sequence	5307..6104	Spectinomycin, Streptomycin	AF224733	sul1	100	840/840	ABNPOE010000032.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309769 SAMN36407775-rid18777143.denovo.32, whole genome shotgun sequence	4851..5690	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPOE010000085.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309769 SAMN36407775-rid18777143.guided.54, whole genome shotgun sequence	6609..7448	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABNPOE010000064.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309769 SAMN36407775-rid18777143.denovo.69, whole genome shotgun sequence	2253..3458	Doxycycline, Tetracycline, Minocycline	AP000342	tet(B)	100	1206/1206	ABNPOE010000086.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309769 SAMN36407775-rid18777143.guided.66, whole genome shotgun sequence	2289..3494	Doxycycline, Tetracycline, Minocycline	AP000342																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNPOE010000037.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309769 SAMN36407775-rid18777143.denovo.37, whole genome shotgun sequence	20868..21194	enterobacteriales	IncHI2A	100	630 / 630	ABNPOE010000056.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309769 SAMN36407775-rid18777143.denovo.60, whole genome shotgun sequence	2686..3315																																																											
GCA_032535165.1_PDT001815395.1_genomic.fna	Salmonella_enterica	0.5221	367.997 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPOH010000001.1 Salmonella enterica strain PNUSAS362311 SAMN36407982-rid18777113.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNPOH010000036.1 Salmonella enterica strain PNUSAS362311 SAMN36407982-rid18777113.guided.17, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPOH010000002.1	149598..150467	99.655	870	0						
GCA_032535185.1_PDT001815388.1_genomic.fna	Salmonella_enterica	0.5206	152.819 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),IncC,IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPOK010000001.1 Salmonella enterica strain PNUSAS361903 SAMN36405527-rid18777103.denovo.01, whole genome shotgun sequence	369357..369794	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPOK010000054.1 Salmonella enterica strain PNUSAS361903 SAMN36405527-rid18777103.guided.42, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNPOK010000031.1 Salmonella enterica strain PNUSAS361903 SAMN36405527-rid18777103.denovo.31, whole genome shotgun sequence	26572..27387	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNPOK010000055.1 Salmonella enterica strain PNUSAS361903 SAMN36405527-rid18777103.guided.45, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNPOK010000031.1 Salmonella enterica strain PNUSAS361903 SAMN36405527-rid18777103.denovo.31, whole genome shotgun sequence	29564..30763	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPOK010000055.1 Salmonella enterica strain PNUSAS361903 SAMN36405527-rid18777103.guided.45, whole genome shotgun sequence	4544..5743	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNPOK010000046.1 Salmonella enterica strain PNUSAS361903 SAMN36405527-rid18777103.denovo.50, whole genome shotgun sequence	371..501	enterobacteriales	IncC	100	417 / 417	ABNPOK010000017.1 Salmonella enterica strain PNUSAS361903 SAMN36405527-rid18777103.denovo.17, whole genome shotgun sequence	69086..69502		enterobacteriales	IncX4	98.88	712 / 712	ABNPOK010000037.1 Salmonella enterica strain PNUSAS361903 SAMN36405527-rid18777103.denovo.37, whole genome shotgun sequence	28681..29392																																									avrA	ABNPOK010000002.1	402472..403341	99.885	870	0						
GCA_032535225.1_PDT001815385.1_genomic.fna	Salmonella_enterica	0.5221	115.998 KB	11	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	2	Col156,Col156,IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPOL010000008.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.denovo.08, whole genome shotgun sequence	145423..145860	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPOL010000062.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.denovo.65, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNPOL010000062.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.denovo.65, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPOL010000062.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.denovo.65, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPOL010000062.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.denovo.65, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPOL010000062.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.denovo.65, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNPOL010000080.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.guided.31, whole genome shotgun sequence	19473..19910	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPOL010000084.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.guided.69, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNPOL010000084.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.guided.69, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPOL010000084.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.guided.69, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPOL010000084.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.guided.69, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPOL010000084.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.guided.69, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNPOL010000064.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.denovo.68, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPOL010000083.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.guided.67, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	97.37	152 / 154	ABNPOL010000065.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.denovo.70, whole genome shotgun sequence	1792..1943	enterobacteriales	Col156	94.81	154 / 154	ABNPOL010000067.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.denovo.72, whole genome shotgun sequence	1942..2095		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPOL010000057.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309773 SAMN36407779-rid18777073.denovo.60, whole genome shotgun sequence	1933..2074																																									avrA	ABNPOL010000009.1	61528..62397	99.655	870	0						
GCA_032535245.1_PDT001815387.1_genomic.fna	Salmonella_enterica	0.522	136.569 KB	13	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPOJ010000016.1 Salmonella enterica subsp. enterica serovar Manhattan strain FSIS32309738 SAMN36407758-rid18777093.denovo.16, whole genome shotgun sequence	17418..17855	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPOJ010000071.1 Salmonella enterica subsp. enterica serovar Manhattan strain FSIS32309738 SAMN36407758-rid18777093.guided.52, whole genome shotgun sequence	5102..5539	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNPOJ010000058.1 Salmonella enterica subsp. enterica serovar Manhattan strain FSIS32309738 SAMN36407758-rid18777093.denovo.61, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNPOJ010000073.1 Salmonella enterica subsp. enterica serovar Manhattan strain FSIS32309738 SAMN36407758-rid18777093.guided.64, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNPOJ010000058.1 Salmonella enterica subsp. enterica serovar Manhattan strain FSIS32309738 SAMN36407758-rid18777093.denovo.61, whole genome shotgun sequence	1150..1280																																																						avrA	ABNPOJ010000002.1	124040..124909	99.425	870	0						
GCA_032535265.1_PDT001815384.1_genomic.fna	Salmonella_enterica	0.5221	503.995 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPOM010000003.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.denovo.03, whole genome shotgun sequence	172196..172633	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNPOM010000025.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.denovo.29, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNPOM010000036.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.guided.16, whole genome shotgun sequence	35780..36217	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNPOM010000040.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.guided.32, whole genome shotgun sequence	2779..3558	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNPOM010000025.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.denovo.29, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNPOM010000040.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.guided.32, whole genome shotgun sequence	1783..2649	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNPOM010000024.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.denovo.28, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNPOM010000038.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.guided.27, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNPOM010000023.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.denovo.26, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNPOM010000039.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNPOM010000025.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.denovo.29, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNPOM010000040.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.guided.32, whole genome shotgun sequence	867..1523	Ciprofloxacin	AY070235	sul1	100	840/840	ABNPOM010000029.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.denovo.37, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPOM010000042.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.guided.36, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNPOM010000023.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.denovo.26, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNPOM010000041.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.guided.33, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNPOM010000023.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.denovo.26, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNPOM010000041.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.guided.33, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNPOM010000020.1 Salmonella enterica strain PNUSAS362265 SAMN36407616-rid18777063.denovo.23, whole genome shotgun sequence	4434..4684																																																						avrA	ABNPOM010000001.1	553473..554342	99.77	870	0						
GCA_032535285.1_PDT001815383.1_genomic.fna	Salmonella_enterica	0.5214	407.022 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPON010000001.1 Salmonella enterica strain PNUSAS362257 SAMN36407622-rid18777053.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPON010000025.1 Salmonella enterica strain PNUSAS362257 SAMN36407622-rid18777053.guided.19, whole genome shotgun sequence	8847..9284	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNPON010000019.1 Salmonella enterica strain PNUSAS362257 SAMN36407622-rid18777053.denovo.20, whole genome shotgun sequence	6839..7481	enterobacteriales	IncFII(S)	100	262 / 262	ABNPON010000020.1 Salmonella enterica strain PNUSAS362257 SAMN36407622-rid18777053.denovo.21, whole genome shotgun sequence	3392..3653																																																avrA	ABNPON010000002.1	553499..554368	99.54	870	0						
GCA_032535325.1_PDT001815382.1_genomic.fna	Salmonella_enterica	0.5211	124.989 KB	11	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNPOO010000022.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS32309772 SAMN36407778-rid18777043.denovo.22, whole genome shotgun sequence	56366..56803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNPOO010000070.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS32309772 SAMN36407778-rid18777043.guided.49, whole genome shotgun sequence	10019..10456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPOO010000003.1	102387..103256	99.77	870	0						
GCA_032535345.1_PDT001815379.1_genomic.fna	Salmonella_enterica	0.523	444.116 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPOR010000001.1 Salmonella enterica strain PNUSAS362267 SAMN36407613-rid18777013.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNPOR010000030.1 Salmonella enterica strain PNUSAS362267 SAMN36407613-rid18777013.guided.21, whole genome shotgun sequence	24944..25381	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPOR010000002.1	149828..150697	99.655	870	0						
GCA_032535365.1_PDT001815377.1_genomic.fna	Salmonella_enterica	0.5216	111.208 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),Col(pHAD28),ColpVC,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPOQ010000012.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323331 SAMN36406829-rid18776993.denovo.012, whole genome shotgun sequence	15456..15893	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPOQ010000102.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323331 SAMN36406829-rid18776993.guided.066, whole genome shotgun sequence	15468..15905	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNPOQ010000046.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323331 SAMN36406829-rid18776993.denovo.046, whole genome shotgun sequence	23492..24307	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNPOQ010000100.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323331 SAMN36406829-rid18776993.guided.050, whole genome shotgun sequence	23533..24348	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNPOQ010000046.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323331 SAMN36406829-rid18776993.denovo.046, whole genome shotgun sequence	26484..27683	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPOQ010000100.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323331 SAMN36406829-rid18776993.guided.050, whole genome shotgun sequence	26525..27724	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNPOQ010000073.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323331 SAMN36406829-rid18776993.denovo.077, whole genome shotgun sequence	1127..1257	enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNPOQ010000075.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323331 SAMN36406829-rid18776993.denovo.079, whole genome shotgun sequence	371..501		enterobacteriales	ColpVC	98.96	193 / 193	ABNPOQ010000083.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323331 SAMN36406829-rid18776993.denovo.087, whole genome shotgun sequence	805..997		enterobacteriales	IncC	100	417 / 417	ABNPOQ010000020.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323331 SAMN36406829-rid18776993.denovo.020, whole genome shotgun sequence	55677..56093																																		avrA	ABNPOQ010000006.1	108453..109322	99.885	870	0						
GCA_032535385.1_PDT001815376.1_genomic.fna	Salmonella_enterica	0.5202	85.619 KB	20	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNPOS010000022.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323321 SAMN36406200-rid18776983.denovo.022, whole genome shotgun sequence	52484..52921	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNPOS010000150.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323321 SAMN36406200-rid18776983.guided.069, whole genome shotgun sequence	3941..4378	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNPOS010000102.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323321 SAMN36406200-rid18776983.denovo.105, whole genome shotgun sequence	3134..3264	enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNPOS010000105.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323321 SAMN36406200-rid18776983.denovo.108, whole genome shotgun sequence	2209..2339		enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNPOS010000106.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323321 SAMN36406200-rid18776983.denovo.109, whole genome shotgun sequence	557..687		enterobacteriales	Col156	94.81	154 / 154	ABNPOS010000108.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323321 SAMN36406200-rid18776983.denovo.111, whole genome shotgun sequence	792..945																																		avrA	ABNPOS010000013.1	93998..94867	99.54	870	0						
GCA_032535405.1_PDT001815375.1_genomic.fna	Salmonella_enterica	0.5205	192.115 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPOU010000001.1 Salmonella enterica strain PNUSAS362315 SAMN36407983-rid18776973.denovo.01, whole genome shotgun sequence	145216..145653	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPOU010000051.1 Salmonella enterica strain PNUSAS362315 SAMN36407983-rid18776973.guided.33, whole genome shotgun sequence	4002..4439	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI2(Delta)	100	316 / 316	ABNPOU010000029.1 Salmonella enterica strain PNUSAS362315 SAMN36407983-rid18776973.denovo.29, whole genome shotgun sequence	31136..31451																																																						avrA	ABNPOU010000006.1	39472..40340	99.77	870	0						
GCA_032535425.1_PDT001815372.1_genomic.fna	Salmonella_enterica	0.5228	81.647 KB	21	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_58,thrA_4	412	-:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC,ColpVC	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNPOV010000049.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32309770 SAMN36407776-rid18776943.denovo.049, whole genome shotgun sequence	12412..12849	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNPOV010000122.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32309770 SAMN36407776-rid18776943.guided.072, whole genome shotgun sequence	15437..15874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	96.89	193 / 193	ABNPOV010000098.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32309770 SAMN36407776-rid18776943.denovo.101, whole genome shotgun sequence	1524..1716	enterobacteriales	ColpVC	98.96	193 / 193	ABNPOV010000101.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32309770 SAMN36407776-rid18776943.denovo.104, whole genome shotgun sequence	805..997																																																avrA	ABNPOV010000011.1	98615..99484	99.54	870	0						
GCA_032535445.1_PDT001815374.1_genomic.fna	Salmonella_enterica	0.5213	88.591 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		2	IncC,IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPOT010000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309774 SAMN36407780-rid18776963.denovo.009, whole genome shotgun sequence	12550..12987	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPOT010000113.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309774 SAMN36407780-rid18776963.guided.063, whole genome shotgun sequence	15320..15757	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNPOT010000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309774 SAMN36407780-rid18776963.denovo.030, whole genome shotgun sequence	251..1066	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNPOT010000117.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309774 SAMN36407780-rid18776963.guided.105, whole genome shotgun sequence	392..1207	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNPOT010000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309774 SAMN36407780-rid18776963.denovo.030, whole genome shotgun sequence	3243..4442	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPOT010000116.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309774 SAMN36407780-rid18776963.guided.093, whole genome shotgun sequence	1589..2788	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncC	100	417 / 417	ABNPOT010000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309774 SAMN36407780-rid18776963.denovo.030, whole genome shotgun sequence	46032..46448	enterobacteriales	IncX1	98.93	374 / 374	ABNPOT010000086.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309774 SAMN36407780-rid18776963.denovo.089, whole genome shotgun sequence	932..1305																																																avrA	ABNPOT010000001.1	98027..98896	99.885	870	0						
GCA_032535465.1_PDT001815373.1_genomic.fna	Salmonella_enterica	0.5214	257.848 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPOW010000001.1 Salmonella enterica strain PNUSAS362263 SAMN36407619-rid18776953.denovo.01, whole genome shotgun sequence	381670..382107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPOW010000035.1 Salmonella enterica strain PNUSAS362263 SAMN36407619-rid18776953.guided.26, whole genome shotgun sequence	16964..17401	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI(Gamma)	100	137 / 141	ABNPOW010000017.1 Salmonella enterica strain PNUSAS362263 SAMN36407619-rid18776953.denovo.17, whole genome shotgun sequence	71813..71949																																																						avrA	ABNPOW010000002.1	402630..403499	99.885	870	0						
GCA_032535485.1_PDT001815370.1_genomic.fna	Salmonella_enterica	0.5222	256.078 KB	7	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPOZ010000003.1 Salmonella enterica strain PNUSAS362317 SAMN36407980-rid18776923.denovo.03, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPOZ010000040.1 Salmonella enterica strain PNUSAS362317 SAMN36407980-rid18776923.guided.30, whole genome shotgun sequence	9691..10128	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNPOZ010000033.1 Salmonella enterica strain PNUSAS362317 SAMN36407980-rid18776923.denovo.36, whole genome shotgun sequence	547..675																																																						avrA	ABNPOZ010000001.1	39441..40310	98.966	870	0						
GCA_032535505.1_PDT001815371.1_genomic.fna	Salmonella_enterica	0.5222	496.398 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPOX010000001.1 Salmonella enterica strain PNUSAS362313 SAMN36407977-rid18776933.denovo.01, whole genome shotgun sequence	790193..790630	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPOX010000028.1 Salmonella enterica strain PNUSAS362313 SAMN36407977-rid18776933.guided.17, whole genome shotgun sequence	21666..22103	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPOX010000002.1	129610..130479	98.966	870	0						
GCA_032535645.1_PDT001815362.1_genomic.fna	Salmonella_enterica	0.5218	391.761 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPPG010000001.1 Salmonella enterica strain PNUSAS362260 SAMN36407625-rid18776313.denovo.01, whole genome shotgun sequence	170681..171118	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPPG010000033.1 Salmonella enterica strain PNUSAS362260 SAMN36407625-rid18776313.guided.21, whole genome shotgun sequence	10881..11318	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPPG010000002.1	121733..122602	99.31	870	0						
GCA_032535665.1_PDT001815363.1_genomic.fna	Salmonella_enterica	0.5201	110.152 KB	14	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPPF010000011.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323325 SAMN36406206-rid18776323.denovo.11, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPPF010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323325 SAMN36406206-rid18776323.guided.46, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	ABNPPF010000064.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323325 SAMN36406206-rid18776323.denovo.67, whole genome shotgun sequence	1914..2595	enterobacteriales	IncFII	96.56	262 / 261	ABNPPF010000042.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323325 SAMN36406206-rid18776323.denovo.43, whole genome shotgun sequence	36467..36728		enterobacteriales	IncX1	100	373 / 373	ABNPPF010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323325 SAMN36406206-rid18776323.denovo.55, whole genome shotgun sequence	2153..2525																																									avrA	ABNPPF010000037.1	39484..40353	99.655	870	0						
GCA_032535685.1_PDT001815361.1_genomic.fna	Salmonella_enterica	0.5206	435.639 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPPH010000001.1 Salmonella enterica strain PNUSAS362310 SAMN36407984-rid18775233.denovo.01, whole genome shotgun sequence	477381..477818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPPH010000027.1 Salmonella enterica strain PNUSAS362310 SAMN36407984-rid18775233.guided.16, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNPPH010000016.1 Salmonella enterica strain PNUSAS362310 SAMN36407984-rid18775233.denovo.17, whole genome shotgun sequence	9188..9721																																																						avrA	ABNPPH010000015.1	39348..40218	99.196	871	0						
GCA_032535705.1_PDT001815359.1_genomic.fna	Salmonella_enterica	0.5217	222.466 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPPJ010000001.1 Salmonella enterica strain PNUSAS362309 SAMN36407978-rid18776833.denovo.01, whole genome shotgun sequence	145361..145798	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPPJ010000056.1 Salmonella enterica strain PNUSAS362309 SAMN36407978-rid18776833.guided.26, whole genome shotgun sequence	14312..14749	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPPJ010000018.1 Salmonella enterica strain PNUSAS362309 SAMN36407978-rid18776833.denovo.18, whole genome shotgun sequence	36049..36691	enterobacteriales	IncFII(S)	100	262 / 262	ABNPPJ010000018.1 Salmonella enterica strain PNUSAS362309 SAMN36407978-rid18776833.denovo.18, whole genome shotgun sequence	51776..52037																																																avrA	ABNPPJ010000002.1	450554..451423	99.885	870	0						
GCA_032535725.1_PDT001815360.1_genomic.fna	Salmonella_enterica	0.5212	207.391 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPPI010000001.1 Salmonella enterica strain PNUSAS362316 SAMN36407981-rid18776303.denovo.01, whole genome shotgun sequence	145117..145554	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPPI010000048.1 Salmonella enterica strain PNUSAS362316 SAMN36407981-rid18776303.guided.15, whole genome shotgun sequence	26729..27166	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNPPI010000003.1	208048..208916	99.77	870	0						
GCA_032535765.1_PDT001815356.1_genomic.fna	Salmonella_enterica	0.5215	257.837 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		5	Col(pHAD28),Col(pHAD28),Col156,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPPM010000002.1 Salmonella enterica subsp. enterica serovar 4:i:- strain H23-01520 SAMN36405481-rid18775223.denovo.02, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPPM010000078.1 Salmonella enterica subsp. enterica serovar 4:i:- strain H23-01520 SAMN36405481-rid18775223.guided.37, whole genome shotgun sequence	4987..5424	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNPPM010000047.1 Salmonella enterica subsp. enterica serovar 4:i:- strain H23-01520 SAMN36405481-rid18775223.denovo.50, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNPPM010000079.1 Salmonella enterica subsp. enterica serovar 4:i:- strain H23-01520 SAMN36405481-rid18775223.guided.49, whole genome shotgun sequence	895..1539	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNPPM010000047.1 Salmonella enterica subsp. enterica serovar 4:i:- strain H23-01520 SAMN36405481-rid18775223.denovo.50, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNPPM010000079.1 Salmonella enterica subsp. enterica serovar 4:i:- strain H23-01520 SAMN36405481-rid18775223.guided.49, whole genome shotgun sequence	239..369		enterobacteriales	Col156	98.03	152 / 154	ABNPPM010000042.1 Salmonella enterica subsp. enterica serovar 4:i:- strain H23-01520 SAMN36405481-rid18775223.denovo.44, whole genome shotgun sequence	967..1118		enterobacteriales	IncFIB(S)	100	643 / 643	ABNPPM010000048.1 Salmonella enterica subsp. enterica serovar 4:i:- strain H23-01520 SAMN36405481-rid18775223.denovo.51, whole genome shotgun sequence	1010..1652		enterobacteriales	IncFII(S)	100	262 / 262	ABNPPM010000043.1 Salmonella enterica subsp. enterica serovar 4:i:- strain H23-01520 SAMN36405481-rid18775223.denovo.45, whole genome shotgun sequence	814..1075		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNPPM010000028.1 Salmonella enterica subsp. enterica serovar 4:i:- strain H23-01520 SAMN36405481-rid18775223.denovo.28, whole genome shotgun sequence	7790..7931																				avrA	ABNPPM010000001.1	401482..402350	100	869	0						
GCA_032535785.1_PDT001815354.1_genomic.fna	Salmonella_enterica	0.5215	92.001 KB	19	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	9,46:e,h:1,6	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B),tet(B)	1	parC_p.T57S	4	Col(pHAD28),Col156,Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	9,46	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I 9,46:e,h:1,6	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNPPO010000048.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309768 SAMN36407759-rid18776813.denovo.048, whole genome shotgun sequence	14059..14496	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNPPO010000136.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309768 SAMN36407759-rid18776813.guided.049, whole genome shotgun sequence	24943..25380	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNPPO010000106.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309768 SAMN36407759-rid18776813.denovo.109, whole genome shotgun sequence	1041..2246	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPPO010000139.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309768 SAMN36407759-rid18776813.guided.115, whole genome shotgun sequence	742..1947	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABNPPO010000140.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309768 SAMN36407759-rid18776813.guided.116, whole genome shotgun sequence	742..1947	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNPPO010000094.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309768 SAMN36407759-rid18776813.denovo.097, whole genome shotgun sequence	557..687	enterobacteriales	Col156	94.81	154 / 154	ABNPPO010000098.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309768 SAMN36407759-rid18776813.denovo.101, whole genome shotgun sequence	792..945		enterobacteriales	Col440I	94.59	111 / 114	ABNPPO010000091.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309768 SAMN36407759-rid18776813.denovo.094, whole genome shotgun sequence	3175..3285		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPPO010000109.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309768 SAMN36407759-rid18776813.denovo.112, whole genome shotgun sequence	218..359																																		avrA	ABNPPO010000014.1	107669..108538	99.54	870	0						
GCA_032535805.1_PDT001815352.1_genomic.fna	Salmonella_enterica	0.5218	71.372 KB	24	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPPP010000009.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323326 SAMN36406209-rid18776803.denovo.009, whole genome shotgun sequence	82284..82721	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNPPP010000066.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323326 SAMN36406209-rid18776803.denovo.068, whole genome shotgun sequence	6190..6992	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPPP010000066.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323326 SAMN36406209-rid18776803.denovo.068, whole genome shotgun sequence	6190..6993	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPPP010000066.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323326 SAMN36406209-rid18776803.denovo.068, whole genome shotgun sequence	6190..6993	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPPP010000066.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323326 SAMN36406209-rid18776803.denovo.068, whole genome shotgun sequence	6190..6993	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNPPP010000066.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323326 SAMN36406209-rid18776803.denovo.068, whole genome shotgun sequence	5450..6190	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNPPP010000066.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323326 SAMN36406209-rid18776803.denovo.068, whole genome shotgun sequence	5450..6190	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABNPPP010000163.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323326 SAMN36406209-rid18776803.guided.058, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNPPP010000164.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323326 SAMN36406209-rid18776803.guided.102, whole genome shotgun sequence	2617..3419	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPPP010000164.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323326 SAMN36406209-rid18776803.guided.102, whole genome shotgun sequence	2616..3419	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPPP010000164.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323326 SAMN36406209-rid18776803.guided.102, whole genome shotgun sequence	2616..3419	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPPP010000164.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323326 SAMN36406209-rid18776803.guided.102, whole genome shotgun sequence	2616..3419	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNPPP010000164.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323326 SAMN36406209-rid18776803.guided.102, whole genome shotgun sequence	3419..4159	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNPPP010000164.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323326 SAMN36406209-rid18776803.guided.102, whole genome shotgun sequence	3419..4159	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNPPP010000112.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323326 SAMN36406209-rid18776803.denovo.116, whole genome shotgun sequence	1873..2554	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABNPPP010000079.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323326 SAMN36406209-rid18776803.denovo.081, whole genome shotgun sequence	5277..5773																																																avrA	ABNPPP010000026.1	61558..62427	98.966	870	0						
GCA_032535985.1_PDT001815353.1_genomic.fna	Salmonella_enterica	0.5209	189.408 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPPQ010000002.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309771 SAMN36407777-rid18776273.denovo.02, whole genome shotgun sequence	50966..51403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPPQ010000070.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309771 SAMN36407777-rid18776273.guided.44, whole genome shotgun sequence	3966..4403	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPPQ010000042.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309771 SAMN36407777-rid18776273.denovo.43, whole genome shotgun sequence	6798..7440	enterobacteriales	IncFII(S)	100	262 / 262	ABNPPQ010000048.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309771 SAMN36407777-rid18776273.denovo.50, whole genome shotgun sequence	3418..3679		enterobacteriales	IncX1	98.93	374 / 374	ABNPPQ010000053.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309771 SAMN36407777-rid18776273.denovo.56, whole genome shotgun sequence	1276..1649																																									avrA	ABNPPQ010000015.1	43538..44407	99.54	870	0						
GCA_032539405.1_PDT001815102.1_genomic.fna	Salmonella_enterica	0.5214	219.461 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),Col440I,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPPS010000001.1 Salmonella enterica strain PNUSAS362261 SAMN36407610-rid18774823.denovo.01, whole genome shotgun sequence	276456..276893	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPPS010000046.1 Salmonella enterica strain PNUSAS362261 SAMN36407610-rid18774823.guided.32, whole genome shotgun sequence	24510..24947	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNPPS010000014.1 Salmonella enterica strain PNUSAS362261 SAMN36407610-rid18774823.denovo.14, whole genome shotgun sequence	26610..27425	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNPPS010000048.1 Salmonella enterica strain PNUSAS362261 SAMN36407610-rid18774823.guided.36, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNPPS010000014.1 Salmonella enterica strain PNUSAS362261 SAMN36407610-rid18774823.denovo.14, whole genome shotgun sequence	29602..30801	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPPS010000048.1 Salmonella enterica strain PNUSAS362261 SAMN36407610-rid18774823.guided.36, whole genome shotgun sequence	4544..5743	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNPPS010000035.1 Salmonella enterica strain PNUSAS362261 SAMN36407610-rid18774823.denovo.39, whole genome shotgun sequence	371..501	enterobacteriales	Col440I	93.81	113 / 114	ABNPPS010000039.1 Salmonella enterica strain PNUSAS362261 SAMN36407610-rid18774823.denovo.43, whole genome shotgun sequence	2528..2639		enterobacteriales	IncC	100	417 / 417	ABNPPS010000014.1 Salmonella enterica strain PNUSAS362261 SAMN36407610-rid18774823.denovo.14, whole genome shotgun sequence	72406..72822																																									avrA	ABNPPS010000003.1	151822..152691	99.885	870	0						
GCA_032539425.1_PDT001815100.1_genomic.fna	Salmonella_enterica	0.5207	364.653 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPPU010000001.1 Salmonella enterica strain PNUSAS362248 SAMN36407628-rid18774803.denovo.01, whole genome shotgun sequence	562092..562529	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPPU010000035.1 Salmonella enterica strain PNUSAS362248 SAMN36407628-rid18774803.guided.24, whole genome shotgun sequence	3855..4292	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPPU010000008.1	140203..141071	99.195	870	0						
GCA_032539745.1_PDT001815082.1_genomic.fna	Salmonella_enterica	0.5222	412.974 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPQD010000001.1 Salmonella enterica strain PNUSAS362249 SAMN36407609-rid18774653.denovo.01, whole genome shotgun sequence	482025..482462	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNPQD010000028.1 Salmonella enterica strain PNUSAS362249 SAMN36407609-rid18774653.guided.18, whole genome shotgun sequence	32257..32694	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNPQD010000002.1	553682..554551	99.655	870	0						
GCA_032539785.1_PDT001815081.1_genomic.fna	Salmonella_enterica	0.5206	406.451 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPQE010000001.1 Salmonella enterica strain PNUSAS362253 SAMN36407612-rid18774643.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPQE010000031.1 Salmonella enterica strain PNUSAS362253 SAMN36407612-rid18774643.guided.15, whole genome shotgun sequence	42939..43376	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPQE010000020.1 Salmonella enterica strain PNUSAS362253 SAMN36407612-rid18774643.denovo.21, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNPQE010000016.1 Salmonella enterica strain PNUSAS362253 SAMN36407612-rid18774643.denovo.17, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNPQE010000017.1 Salmonella enterica strain PNUSAS362253 SAMN36407612-rid18774643.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABNPQE010000002.1	553690..554559	99.54	870	0						
GCA_032539805.1_PDT001815080.1_genomic.fna	Salmonella_enterica	0.522	466.911 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPQF010000001.1 Salmonella enterica strain PNUSAS362251 SAMN36407624-rid18774633.denovo.01, whole genome shotgun sequence	626454..626891	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPQF010000026.1 Salmonella enterica strain PNUSAS362251 SAMN36407624-rid18774633.guided.18, whole genome shotgun sequence	6018..6455	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPQF010000010.1	150692..151562	99.196	871	0						
GCA_032539825.1_PDT001815079.1_genomic.fna	Salmonella_enterica	0.5222	501.407 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPQG010000001.1 Salmonella enterica strain PNUSAS362255 SAMN36407627-rid18774623.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNPQG010000023.1 Salmonella enterica strain PNUSAS362255 SAMN36407627-rid18774623.guided.17, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPQG010000002.1	561740..562610	99.656	871	0						
GCA_032539845.1_PDT001815077.1_genomic.fna	Salmonella_enterica	0.523	215.03 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPQI010000001.1 Salmonella enterica strain PNUSAS362256 SAMN36407621-rid18774603.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNPQI010000035.1 Salmonella enterica strain PNUSAS362256 SAMN36407621-rid18774603.guided.25, whole genome shotgun sequence	15365..15802	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPQI010000004.1	149923..150792	99.655	870	0						
GCA_032539865.1_PDT001815078.1_genomic.fna	Salmonella_enterica	0.5212	589.245 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNPQH010000001.1 Salmonella enterica strain PNUSAS362254 SAMN36407618-rid18774613.denovo.01, whole genome shotgun sequence	643052..643489	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNPQH010000025.1 Salmonella enterica strain PNUSAS362254 SAMN36407618-rid18774613.guided.17, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPQH010000002.1	494018..494886	99.425	870	0						
GCA_032539885.1_PDT001815076.1_genomic.fna	Salmonella_enterica	0.5208	720.584 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPQJ010000001.1 Salmonella enterica strain PNUSAS362259 SAMN36407615-rid18774853.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPQJ010000024.1 Salmonella enterica strain PNUSAS362259 SAMN36407615-rid18774853.guided.16, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032539905.1_PDT001815074.1_genomic.fna	Salmonella_enterica	0.5223	762.475 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPQL010000001.1 Salmonella enterica strain PNUSAS362269 SAMN36407623-rid18774583.denovo.01, whole genome shotgun sequence	458320..458757	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNPQL010000022.1 Salmonella enterica strain PNUSAS362269 SAMN36407623-rid18774583.guided.14, whole genome shotgun sequence	20568..21005	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNPQL010000004.1	553683..554552	99.655	870	0						
GCA_032539925.1_PDT001815073.1_genomic.fna	Salmonella_enterica	0.5217	264.832 KB	6	aroC_230,dnaN_38,hemD_158,hisD_363,purE_236,sucA_215,thrA_209	Unknown	7:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_230	dnaN	100	100	dnaN_38	hemD	100	100	hemD_158	hisD	100	100	hisD_363	purE	100	100	purE_236	sucA	100	100	sucA_215	thrA	100	100	thrA_209	7	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Lomita		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPQM010000001.1 Salmonella enterica strain PNUSAS362264 SAMN36407629-rid18774573.denovo.01, whole genome shotgun sequence	551638..552075	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNPQM010000049.1 Salmonella enterica strain PNUSAS362264 SAMN36407629-rid18774573.guided.31, whole genome shotgun sequence	4035..4472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNPQM010000018.1 Salmonella enterica strain PNUSAS362264 SAMN36407629-rid18774573.denovo.18, whole genome shotgun sequence	67910..68051																																																																	
GCA_032539945.1_PDT001815075.1_genomic.fna	Salmonella_enterica	0.5209	537.34 KB	2	aroC_13,dnaN_12,hemD_17,hisD_1544,purE_13,sucA_16,thrA_4	7930	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_1544	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNPQK010000001.1 Salmonella enterica strain PNUSAS362250 SAMN36407626-rid18774593.denovo.01, whole genome shotgun sequence	643314..643751	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNPQK010000033.1 Salmonella enterica strain PNUSAS362250 SAMN36407626-rid18774593.guided.23, whole genome shotgun sequence	4035..4472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNPQK010000025.1 Salmonella enterica strain PNUSAS362250 SAMN36407626-rid18774593.denovo.28, whole genome shotgun sequence	575..705	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNPQK010000014.1 Salmonella enterica strain PNUSAS362250 SAMN36407626-rid18774593.denovo.14, whole genome shotgun sequence	34930..35463																																																avrA	ABNPQK010000002.1	497124..497992	99.425	870	0						
GCA_032539965.1_PDT001815072.1_genomic.fna	Salmonella_enterica	0.5218	502.042 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNPQN010000001.1 Salmonella enterica strain PNUSAS362258 SAMN36407620-rid18774563.denovo.01, whole genome shotgun sequence	847760..848197	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNPQN010000022.1 Salmonella enterica strain PNUSAS362258 SAMN36407620-rid18774563.guided.14, whole genome shotgun sequence	35814..36251	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPQN010000002.1	149820..150689	99.425	870	0						
GCA_032539985.1_PDT001815069.1_genomic.fna	Salmonella_enterica	0.5224	608.161 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	Col440I,IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPQR010000001.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.denovo.01, whole genome shotgun sequence	462724..463161	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNPQR010000024.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.denovo.27, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNPQR010000038.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.guided.19, whole genome shotgun sequence	6040..6477	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNPQR010000043.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.guided.33, whole genome shotgun sequence	2310..3089	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNPQR010000024.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.denovo.27, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNPQR010000043.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.guided.33, whole genome shotgun sequence	1314..2180	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNPQR010000022.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.denovo.25, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNPQR010000044.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.guided.35, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNPQR010000021.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.denovo.23, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNPQR010000041.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNPQR010000024.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.denovo.27, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNPQR010000043.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.guided.33, whole genome shotgun sequence	398..1054	Ciprofloxacin	AY070235	sul1	100	840/840	ABNPQR010000029.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.denovo.37, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPQR010000045.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.guided.36, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNPQR010000021.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.denovo.23, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNPQR010000042.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.guided.32, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNPQR010000021.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.denovo.23, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNPQR010000042.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.guided.32, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNPQR010000025.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.denovo.28, whole genome shotgun sequence	3175..3285	enterobacteriales	IncR	100	251 / 251	ABNPQR010000017.1 Salmonella enterica strain PNUSAS362252 SAMN36407611-rid18774543.denovo.17, whole genome shotgun sequence	4434..4684																																																avrA	ABNPQR010000002.1	586519..587388	99.77	870	0						
GCA_032540005.1_PDT001815070.1_genomic.fna	Salmonella_enterica	0.5215	188.662 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPQP010000001.1 Salmonella enterica strain PNUSAS362262 SAMN36407614-rid18774553.denovo.01, whole genome shotgun sequence	452635..453072	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNPQP010000053.1 Salmonella enterica strain PNUSAS362262 SAMN36407614-rid18774553.guided.33, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032540025.1_PDT001815071.1_genomic.fna	Salmonella_enterica	0.5196	400.002 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPQO010000001.1 Salmonella enterica strain PNUSAS362268 SAMN36407617-rid18774843.denovo.01, whole genome shotgun sequence	250444..250881	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPQO010000026.1 Salmonella enterica strain PNUSAS362268 SAMN36407617-rid18774843.guided.19, whole genome shotgun sequence	3994..4431	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPQO010000012.1 Salmonella enterica strain PNUSAS362268 SAMN36407617-rid18774843.denovo.12, whole genome shotgun sequence	39678..39819																																																																	
GCA_032540045.1_PDT001815068.1_genomic.fna	Salmonella_enterica	0.5217	272.598 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPQQ010000001.1 Salmonella enterica strain PNUSAS362266 SAMN36407608-rid18774533.denovo.01, whole genome shotgun sequence	412678..413115	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPQQ010000044.1 Salmonella enterica strain PNUSAS362266 SAMN36407608-rid18774533.guided.29, whole genome shotgun sequence	2245..2682	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPQQ010000021.1 Salmonella enterica strain PNUSAS362266 SAMN36407608-rid18774533.denovo.21, whole genome shotgun sequence	48394..49036	enterobacteriales	IncFII(S)	100	262 / 262	ABNPQQ010000021.1 Salmonella enterica strain PNUSAS362266 SAMN36407608-rid18774533.denovo.21, whole genome shotgun sequence	64121..64382																																																avrA	ABNPQQ010000002.1	209722..210591	99.885	870	0						
GCA_032540105.1_PDT001815065.1_genomic.fna	Salmonella_enterica	0.5214	108.35 KB	13	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPQU010000017.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323323 SAMN36406199-rid18774503.denovo.17, whole genome shotgun sequence	79803..80240	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNPQU010000049.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323323 SAMN36406199-rid18774503.denovo.49, whole genome shotgun sequence	6051..6853	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPQU010000049.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323323 SAMN36406199-rid18774503.denovo.49, whole genome shotgun sequence	6051..6854	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPQU010000049.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323323 SAMN36406199-rid18774503.denovo.49, whole genome shotgun sequence	6051..6854	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPQU010000049.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323323 SAMN36406199-rid18774503.denovo.49, whole genome shotgun sequence	6051..6854	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNPQU010000049.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323323 SAMN36406199-rid18774503.denovo.49, whole genome shotgun sequence	5311..6051	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNPQU010000049.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323323 SAMN36406199-rid18774503.denovo.49, whole genome shotgun sequence	5311..6051	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABNPQU010000092.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323323 SAMN36406199-rid18774503.guided.52, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNPQU010000095.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323323 SAMN36406199-rid18774503.guided.72, whole genome shotgun sequence	2617..3419	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPQU010000095.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323323 SAMN36406199-rid18774503.guided.72, whole genome shotgun sequence	2616..3419	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPQU010000095.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323323 SAMN36406199-rid18774503.guided.72, whole genome shotgun sequence	2616..3419	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPQU010000095.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323323 SAMN36406199-rid18774503.guided.72, whole genome shotgun sequence	2616..3419	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNPQU010000095.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323323 SAMN36406199-rid18774503.guided.72, whole genome shotgun sequence	3419..4159	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNPQU010000095.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323323 SAMN36406199-rid18774503.guided.72, whole genome shotgun sequence	3419..4159	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNPQU010000064.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323323 SAMN36406199-rid18774503.denovo.67, whole genome shotgun sequence	2162..2843	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABNPQU010000053.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12323323 SAMN36406199-rid18774503.denovo.54, whole genome shotgun sequence	4946..5442																																																avrA	ABNPQU010000011.1	103727..104596	98.966	870	0						
GCA_032540205.1_PDT001815059.1_genomic.fna	Salmonella_enterica	0.5201	113.24 KB	15	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPQZ010000016.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323327 SAMN36406211-rid18774443.denovo.016, whole genome shotgun sequence	52317..52754	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPQZ010000105.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323327 SAMN36406211-rid18774443.guided.054, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNPQZ010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323327 SAMN36406211-rid18774443.denovo.060, whole genome shotgun sequence	4356..4615	enterobacteriales	IncX1	100	373 / 373	ABNPQZ010000076.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323327 SAMN36406211-rid18774443.denovo.079, whole genome shotgun sequence	2153..2525																																																avrA	ABNPQZ010000033.1	39600..40469	99.655	870	0						
GCA_032540365.1_PDT001815053.1_genomic.fna	Salmonella_enterica	0.5198	123.51 KB	12	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	2	ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPRF010000001.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323330 SAMN36406828-rid18774383.denovo.01, whole genome shotgun sequence	486112..486549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPRF010000088.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323330 SAMN36406828-rid18774383.guided.50, whole genome shotgun sequence	20547..20984	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNPRF010000007.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323330 SAMN36406828-rid18774383.denovo.07, whole genome shotgun sequence	17991..18413	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNPRF010000089.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323330 SAMN36406828-rid18774383.guided.53, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	96.89	193 / 193	ABNPRF010000067.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323330 SAMN36406828-rid18774383.denovo.71, whole genome shotgun sequence	1524..1716	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPRF010000034.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323330 SAMN36406828-rid18774383.denovo.34, whole genome shotgun sequence	33745..33886																																																avrA	ABNPRF010000006.1	96015..96884	99.195	870	0						
GCA_032540445.1_PDT001815046.1_genomic.fna	Salmonella_enterica	0.5215	133.791 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPRM010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323329 SAMN36406827-rid18774313.denovo.01, whole genome shotgun sequence	51051..51488	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPRM010000073.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323329 SAMN36406827-rid18774313.guided.40, whole genome shotgun sequence	8082..8519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPRM010000049.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323329 SAMN36406827-rid18774313.denovo.52, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNPRM010000053.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323329 SAMN36406827-rid18774313.denovo.56, whole genome shotgun sequence	3400..3661																																																avrA	ABNPRM010000003.1	149514..150383	99.54	870	0						
GCA_032540505.1_PDT001815044.1_genomic.fna	Salmonella_enterica	0.52	97.647 KB	18	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPRO010000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323324 SAMN36406204-rid18774293.denovo.009, whole genome shotgun sequence	83318..83755	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPRO010000123.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323324 SAMN36406204-rid18774293.guided.042, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNPRO010000064.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323324 SAMN36406204-rid18774293.denovo.067, whole genome shotgun sequence	4356..4615	enterobacteriales	IncX1	100	373 / 373	ABNPRO010000092.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323324 SAMN36406204-rid18774293.denovo.095, whole genome shotgun sequence	2153..2525																																																avrA	ABNPRO010000037.1	39501..40370	99.655	870	0						
GCA_032540525.1_PDT001815043.1_genomic.fna	Salmonella_enterica	0.5228	60.371 KB	25	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPRQ010000007.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323328 SAMN36406213-rid18774283.denovo.007, whole genome shotgun sequence	20203..20640	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPRQ010000168.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323328 SAMN36406213-rid18774283.guided.060, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPRQ010000101.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323328 SAMN36406213-rid18774283.denovo.104, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNPRQ010000107.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323328 SAMN36406213-rid18774283.denovo.110, whole genome shotgun sequence	3388..3649																																																avrA	ABNPRQ010000005.1	108712..109581	99.54	870	0						
GCA_032540545.1_PDT001815045.1_genomic.fna	Salmonella_enterica	0.5221	114.794 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPRN010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323332 SAMN36406830-rid18774303.denovo.001, whole genome shotgun sequence	477814..478251	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPRN010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323332 SAMN36406830-rid18774303.denovo.049, whole genome shotgun sequence	22822..23613	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPRN010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323332 SAMN36406830-rid18774303.denovo.049, whole genome shotgun sequence	22822..23613	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNPRN010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323332 SAMN36406830-rid18774303.guided.064, whole genome shotgun sequence	14520..14957	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPRN010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323332 SAMN36406830-rid18774303.guided.088, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPRN010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323332 SAMN36406830-rid18774303.guided.088, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNPRN010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323332 SAMN36406830-rid18774303.denovo.081, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNPRN010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323332 SAMN36406830-rid18774303.guided.082, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNPRN010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323332 SAMN36406830-rid18774303.denovo.086, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABNPRN010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323332 SAMN36406830-rid18774303.guided.096, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABNPRN010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323332 SAMN36406830-rid18774303.denovo.049, whole genome shotgun sequence	21478..22317	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPRN010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323332 SAMN36406830-rid18774303.guided.088, whole genome shotgun sequence	2393..3232	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPRN010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323332 SAMN36406830-rid18774303.denovo.049, whole genome shotgun sequence	7762..8961	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPRN010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323332 SAMN36406830-rid18774303.guided.052, whole genome shotgun sequence	12319..13518	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPRN010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323332 SAMN36406830-rid18774303.denovo.062, whole genome shotgun sequence	14634..15193																																																						avrA	ABNPRN010000005.1	124346..125215	99.655	870	0						
GCA_032540585.1_PDT001815033.1_genomic.fna	Salmonella_enterica	0.5216	248.512 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPRT010000002.1 Salmonella enterica strain PNUSAS361901 SAMN36406114-rid18774183.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPRT010000052.1 Salmonella enterica strain PNUSAS361901 SAMN36406114-rid18774183.guided.41, whole genome shotgun sequence	2322..2759	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPRT010000024.1 Salmonella enterica strain PNUSAS361901 SAMN36406114-rid18774183.denovo.24, whole genome shotgun sequence	44772..45414	enterobacteriales	IncFII(S)	100	262 / 262	ABNPRT010000024.1 Salmonella enterica strain PNUSAS361901 SAMN36406114-rid18774183.denovo.24, whole genome shotgun sequence	29426..29687																																																avrA	ABNPRT010000001.1	446722..447590	100	869	0						
GCA_032540625.1_PDT001815031.1_genomic.fna	Salmonella_enterica	0.5223	568.743 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPRS010000001.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.denovo.01, whole genome shotgun sequence	172132..172569	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNPRS010000020.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.denovo.23, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABNPRS010000028.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.guided.22, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNPRS010000031.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.guided.28, whole genome shotgun sequence	720..1157	Amikacin, Tobramycin	NC_003197	blaCARB-2	100	867/867	ABNPRS010000020.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.denovo.23, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNPRS010000028.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.guided.22, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNPRS010000019.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.denovo.21, whole genome shotgun sequence	6582..7487	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNPRS010000029.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.guided.25, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNPRS010000018.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.denovo.20, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNPRS010000032.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.guided.29, whole genome shotgun sequence	529..1742	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNPRS010000020.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.denovo.23, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNPRS010000028.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.guided.22, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNPRS010000019.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.denovo.21, whole genome shotgun sequence	432..1271	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPRS010000033.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.guided.30, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNPRS010000018.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.denovo.20, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNPRS010000030.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.guided.26, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNPRS010000018.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.denovo.20, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNPRS010000030.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.guided.26, whole genome shotgun sequence	2439..2912	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNPRS010000014.1 Salmonella enterica strain SAL-22-VL-WA-NY-0001 SAMN36405980-rid18774163.denovo.16, whole genome shotgun sequence	4434..4684																																																						avrA	ABNPRS010000003.1	583640..584509	99.77	870	0						
GCA_032540645.1_PDT001815030.1_genomic.fna	Salmonella_enterica	0.5216	231.351 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPRV010000002.1 Salmonella enterica strain PNUSAS361904 SAMN36405528-rid18774153.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPRV010000051.1 Salmonella enterica strain PNUSAS361904 SAMN36405528-rid18774153.guided.37, whole genome shotgun sequence	9834..10271	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPRV010000016.1 Salmonella enterica strain PNUSAS361904 SAMN36405528-rid18774153.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNPRV010000016.1 Salmonella enterica strain PNUSAS361904 SAMN36405528-rid18774153.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABNPRV010000001.1	401413..402281	100	869	0						
GCA_032540655.1_PDT001815029.1_genomic.fna	Salmonella_enterica	0.5219	324.384 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPRW010000003.1 Salmonella enterica strain PNUSAS361900 SAMN36405524-rid18774143.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPRW010000042.1 Salmonella enterica strain PNUSAS361900 SAMN36405524-rid18774143.guided.33, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPRW010000017.1 Salmonella enterica strain PNUSAS361900 SAMN36405524-rid18774143.denovo.17, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNPRW010000017.1 Salmonella enterica strain PNUSAS361900 SAMN36405524-rid18774143.denovo.17, whole genome shotgun sequence	22546..22807																																																avrA	ABNPRW010000002.1	389076..389944	100	869	0						
GCA_032540685.1_PDT001815027.1_genomic.fna	Salmonella_enterica	0.5214	413.158 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPRY010000001.1 Salmonella enterica strain PNUSAS361905 SAMN36405526-rid18774123.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPRY010000029.1 Salmonella enterica strain PNUSAS361905 SAMN36405526-rid18774123.guided.22, whole genome shotgun sequence	10775..11212	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPRY010000018.1 Salmonella enterica strain PNUSAS361905 SAMN36405526-rid18774123.denovo.18, whole genome shotgun sequence	48513..49155	enterobacteriales	IncFII(S)	100	262 / 262	ABNPRY010000018.1 Salmonella enterica strain PNUSAS361905 SAMN36405526-rid18774123.denovo.18, whole genome shotgun sequence	4260..4521																																																avrA	ABNPRY010000002.1	553285..554154	99.54	870	0						
GCA_032540705.1_PDT001815028.1_genomic.fna	Salmonella_enterica	0.5213	359.44 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPRX010000001.1 Salmonella enterica strain PNUSAS361902 SAMN36405525-rid18774133.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPRX010000030.1 Salmonella enterica strain PNUSAS361902 SAMN36405525-rid18774133.guided.24, whole genome shotgun sequence	1167..1604	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPRX010000022.1 Salmonella enterica strain PNUSAS361902 SAMN36405525-rid18774133.denovo.22, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNPRX010000019.1 Salmonella enterica strain PNUSAS361902 SAMN36405525-rid18774133.denovo.19, whole genome shotgun sequence	4395..4656																																																avrA	ABNPRX010000002.1	505783..506652	99.54	870	0						
GCA_032540785.1_PDT001814991.1_genomic.fna	Salmonella_enterica	0.522	390.303 KB	5	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPSC010000003.1 Salmonella enterica strain PNUSAS362162 SAMN36405420-rid18773763.denovo.03, whole genome shotgun sequence	38306..38743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPSC010000034.1 Salmonella enterica strain PNUSAS362162 SAMN36405420-rid18773763.guided.16, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPSC010000004.1	151500..152369	98.966	870	0						
GCA_032540805.1_PDT001814990.1_genomic.fna	Salmonella_enterica	0.5209	478.438 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPSD010000001.1 Salmonella enterica strain PNUSAS362154 SAMN36405426-rid18773753.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPSD010000017.1 Salmonella enterica strain PNUSAS362154 SAMN36405426-rid18773753.guided.10, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPSD010000011.1 Salmonella enterica strain PNUSAS362154 SAMN36405426-rid18773753.denovo.13, whole genome shotgun sequence	40524..41166	enterobacteriales	IncFII(S)	100	262 / 262	ABNPSD010000014.1 Salmonella enterica strain PNUSAS362154 SAMN36405426-rid18773753.denovo.17, whole genome shotgun sequence	3420..3681																																																avrA	ABNPSD010000002.1	553535..554404	99.54	870	0						
GCA_032540825.1_PDT001814989.1_genomic.fna	Salmonella_enterica	0.5208	489.972 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPSE010000001.1 Salmonella enterica strain PNUSAS362160 SAMN36405415-rid18773743.denovo.01, whole genome shotgun sequence	815094..815531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPSE010000022.1 Salmonella enterica strain PNUSAS362160 SAMN36405415-rid18773743.guided.11, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPSE010000012.1 Salmonella enterica strain PNUSAS362160 SAMN36405415-rid18773743.denovo.14, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	ABNPSE010000015.1 Salmonella enterica strain PNUSAS362160 SAMN36405415-rid18773743.denovo.18, whole genome shotgun sequence	3423..3684																																																avrA	ABNPSE010000002.1	553075..553944	99.54	870	0						
GCA_032540845.1_PDT001814988.1_genomic.fna	Salmonella_enterica	0.5213	300.108 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPSF010000001.1 Salmonella enterica strain PNUSAS362155 SAMN36405423-rid18773733.denovo.01, whole genome shotgun sequence	591756..592193	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPSF010000034.1 Salmonella enterica strain PNUSAS362155 SAMN36405423-rid18773733.guided.23, whole genome shotgun sequence	15997..16434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPSF010000015.1 Salmonella enterica strain PNUSAS362155 SAMN36405423-rid18773733.denovo.15, whole genome shotgun sequence	48425..49067	enterobacteriales	IncFII(S)	100	262 / 262	ABNPSF010000015.1 Salmonella enterica strain PNUSAS362155 SAMN36405423-rid18773733.denovo.15, whole genome shotgun sequence	64152..64413																																																avrA	ABNPSF010000002.1	209733..210602	99.885	870	0						
GCA_032540865.1_PDT001814987.1_genomic.fna	Salmonella_enterica	0.5206	438.302 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNPSG010000001.1 Salmonella enterica strain PNUSAS362158 SAMN36405412-rid18773723.denovo.01, whole genome shotgun sequence	576382..576819	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNPSG010000026.1 Salmonella enterica strain PNUSAS362158 SAMN36405412-rid18773723.guided.11, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNPSG010000016.1 Salmonella enterica strain PNUSAS362158 SAMN36405412-rid18773723.denovo.18, whole genome shotgun sequence	5762..6295																																																						avrA	ABNPSG010000002.1	563572..564441	99.77	870	0						
GCA_032540885.1_PDT001814986.1_genomic.fna	Salmonella_enterica	0.5209	490.04 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPSH010000001.1 Salmonella enterica strain PNUSAS362161 SAMN36405427-rid18773713.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPSH010000019.1 Salmonella enterica strain PNUSAS362161 SAMN36405427-rid18773713.guided.10, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPSH010000011.1 Salmonella enterica strain PNUSAS362161 SAMN36405427-rid18773713.denovo.13, whole genome shotgun sequence	40556..41198	enterobacteriales	IncFII(S)	100	262 / 262	ABNPSH010000014.1 Salmonella enterica strain PNUSAS362161 SAMN36405427-rid18773713.denovo.17, whole genome shotgun sequence	3406..3667																																																avrA	ABNPSH010000002.1	505461..506330	99.54	870	0						
GCA_032540905.1_PDT001814983.1_genomic.fna	Salmonella_enterica	0.5204	490.103 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPSI010000001.1 Salmonella enterica strain PNUSAS362148 SAMN36405416-rid18773683.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPSI010000021.1 Salmonella enterica strain PNUSAS362148 SAMN36405416-rid18773683.guided.17, whole genome shotgun sequence	2503..2940	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPSI010000011.1 Salmonella enterica strain PNUSAS362148 SAMN36405416-rid18773683.denovo.11, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNPSI010000014.1 Salmonella enterica strain PNUSAS362148 SAMN36405416-rid18773683.denovo.16, whole genome shotgun sequence	3388..3649		enterobacteriales	IncX1	98.93	374 / 374	ABNPSI010000013.1 Salmonella enterica strain PNUSAS362148 SAMN36405416-rid18773683.denovo.13, whole genome shotgun sequence	32011..32384																																									avrA	ABNPSI010000002.1	553362..554231	99.54	870	0						
GCA_032540925.1_PDT001814984.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPSJ010000001.1 Salmonella enterica strain PNUSAS362152 SAMN36405413-rid18773693.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPSJ010000022.1 Salmonella enterica strain PNUSAS362152 SAMN36405413-rid18773693.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNPSJ010000019.1 Salmonella enterica strain PNUSAS362152 SAMN36405413-rid18773693.denovo.22, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPSJ010000012.1 Salmonella enterica strain PNUSAS362152 SAMN36405413-rid18773693.denovo.14, whole genome shotgun sequence	40540..41182		enterobacteriales	IncFII(S)	100	262 / 262	ABNPSJ010000015.1 Salmonella enterica strain PNUSAS362152 SAMN36405413-rid18773693.denovo.18, whole genome shotgun sequence	3414..3675																																									avrA	ABNPSJ010000002.1	553636..554505	99.54	870	0						
GCA_032540965.1_PDT001814982.1_genomic.fna	Salmonella_enterica	0.5215	682.666 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNPSL010000001.1 Salmonella enterica strain PNUSAS362157 SAMN36405421-rid18773673.denovo.01, whole genome shotgun sequence	596592..597029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNPSL010000017.1 Salmonella enterica strain PNUSAS362157 SAMN36405421-rid18773673.guided.12, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPSL010000004.1	544607..545475	99.425	870	0						
GCA_032540985.1_PDT001814980.1_genomic.fna	Salmonella_enterica	0.5205	436.383 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPSM010000001.1 Salmonella enterica strain PNUSAS362128 SAMN36405000-rid18773653.denovo.01, whole genome shotgun sequence	477380..477817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPSM010000030.1 Salmonella enterica strain PNUSAS362128 SAMN36405000-rid18773653.guided.21, whole genome shotgun sequence	22849..23286	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNPSM010000017.1 Salmonella enterica strain PNUSAS362128 SAMN36405000-rid18773653.denovo.17, whole genome shotgun sequence	7760..8293																																																						avrA	ABNPSM010000008.1	192358..193228	99.196	871	0						
GCA_032541005.1_PDT001814985.1_genomic.fna	Salmonella_enterica	0.5209	558.057 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pXuzhou21	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNPSK010000001.1 Salmonella enterica strain PNUSAS362149 SAMN36405418-rid18773703.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNPSK010000026.1 Salmonella enterica strain PNUSAS362149 SAMN36405418-rid18773703.guided.20, whole genome shotgun sequence	16407..16844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pXuzhou21	98.33	720 / 720	ABNPSK010000014.1 Salmonella enterica strain PNUSAS362149 SAMN36405418-rid18773703.denovo.16, whole genome shotgun sequence	24198..24917																																																						avrA	ABNPSK010000003.1	94228..95097	98.966	870	0						
GCA_032541025.1_PDT001814979.1_genomic.fna	Salmonella_enterica	0.522	398.295 KB	4	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPSN010000004.1 Salmonella enterica strain PNUSAS362130 SAMN36404995-rid18773643.denovo.04, whole genome shotgun sequence	252456..252893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPSN010000022.1 Salmonella enterica strain PNUSAS362130 SAMN36404995-rid18773643.denovo.26, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNPSN010000022.1 Salmonella enterica strain PNUSAS362130 SAMN36404995-rid18773643.denovo.26, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPSN010000022.1 Salmonella enterica strain PNUSAS362130 SAMN36404995-rid18773643.denovo.26, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPSN010000022.1 Salmonella enterica strain PNUSAS362130 SAMN36404995-rid18773643.denovo.26, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPSN010000022.1 Salmonella enterica strain PNUSAS362130 SAMN36404995-rid18773643.denovo.26, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNPSN010000035.1 Salmonella enterica strain PNUSAS362130 SAMN36404995-rid18773643.guided.13, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPSN010000038.1 Salmonella enterica strain PNUSAS362130 SAMN36404995-rid18773643.guided.25, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNPSN010000038.1 Salmonella enterica strain PNUSAS362130 SAMN36404995-rid18773643.guided.25, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPSN010000038.1 Salmonella enterica strain PNUSAS362130 SAMN36404995-rid18773643.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPSN010000038.1 Salmonella enterica strain PNUSAS362130 SAMN36404995-rid18773643.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPSN010000038.1 Salmonella enterica strain PNUSAS362130 SAMN36404995-rid18773643.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNPSN010000024.1 Salmonella enterica strain PNUSAS362130 SAMN36404995-rid18773643.denovo.29, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPSN010000039.1 Salmonella enterica strain PNUSAS362130 SAMN36404995-rid18773643.guided.27, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPSN010000002.1	573260..574129	99.655	870	0						
GCA_032541105.1_PDT001814848.1_genomic.fna	Salmonella_enterica	0.5205	323.011 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCWV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0620 SAMN34056823-rid18772293.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCWV010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0620 SAMN34056823-rid18772293.guided.17, whole genome shotgun sequence	20165..20602	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCWV010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0620 SAMN34056823-rid18772293.denovo.18, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCWV010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0620 SAMN34056823-rid18772293.denovo.18, whole genome shotgun sequence	49147..49408																																																avrA	DAQCWV010000002.1	550912..551781	99.54	870	0						
GCA_032541125.1_PDT001814847.1_genomic.fna	Salmonella_enterica	0.5205	440.237 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCWW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0633 SAMN34056824-rid18772283.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCWW010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0633 SAMN34056824-rid18772283.guided.13, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCWW010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0633 SAMN34056824-rid18772283.denovo.16, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCWW010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0633 SAMN34056824-rid18772283.denovo.16, whole genome shotgun sequence	49147..49408																																																avrA	DAQCWW010000002.1	553220..554089	99.54	870	0						
GCA_032541145.1_PDT001814846.1_genomic.fna	Salmonella_enterica	0.5206	406.342 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCWX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0679 SAMN34056833-rid18772273.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCWX010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0679 SAMN34056833-rid18772273.guided.13, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCWX010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0679 SAMN34056833-rid18772273.denovo.16, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCWX010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0679 SAMN34056833-rid18772273.denovo.16, whole genome shotgun sequence	49147..49408																																																avrA	DAQCWX010000002.1	553220..554089	99.54	870	0						
GCA_032541165.1_PDT001814845.1_genomic.fna	Salmonella_enterica	0.5205	406.342 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCWY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0680 SAMN34056834-rid18772263.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCWY010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0680 SAMN34056834-rid18772263.guided.15, whole genome shotgun sequence	29799..30236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCWY010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0680 SAMN34056834-rid18772263.denovo.16, whole genome shotgun sequence	47962..48604	enterobacteriales	IncFII(S)	100	262 / 262	DAQCWY010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0680 SAMN34056834-rid18772263.denovo.16, whole genome shotgun sequence	3709..3970																																																avrA	DAQCWY010000002.1	553220..554089	99.54	870	0						
GCA_032541185.1_PDT001814844.1_genomic.fna	Salmonella_enterica	0.5205	406.342 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCWZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0681 SAMN34056835-rid18772253.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCWZ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0681 SAMN34056835-rid18772253.guided.14, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCWZ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0681 SAMN34056835-rid18772253.denovo.17, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCWZ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0681 SAMN34056835-rid18772253.denovo.17, whole genome shotgun sequence	49147..49408																																																avrA	DAQCWZ010000002.1	553081..553950	99.54	870	0						
GCA_032541205.1_PDT001814843.1_genomic.fna	Salmonella_enterica	0.521	400.972 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0684 SAMN34056836-rid18773463.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXA010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0684 SAMN34056836-rid18773463.guided.20, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXA010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0684 SAMN34056836-rid18773463.denovo.15, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXA010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0684 SAMN34056836-rid18773463.denovo.15, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXA010000002.1	553220..554089	99.54	870	0						
GCA_032541225.1_PDT001814842.1_genomic.fna	Salmonella_enterica	0.521	406.342 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0685 SAMN34056837-rid18772243.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXB010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0685 SAMN34056837-rid18772243.guided.23, whole genome shotgun sequence	578..1015	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXB010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0685 SAMN34056837-rid18772243.denovo.15, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXB010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0685 SAMN34056837-rid18772243.denovo.15, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXB010000003.1	140718..141587	99.54	870	0						
GCA_032541245.1_PDT001814840.1_genomic.fna	Salmonella_enterica	0.5193	320.469 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,IncFIB(S),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0766 SAMN34056839-rid18772233.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXC010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0766 SAMN34056839-rid18772233.guided.19, whole genome shotgun sequence	9913..10350	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.16	154 / 154	DAQCXC010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0766 SAMN34056839-rid18772233.denovo.25, whole genome shotgun sequence	1417..1570	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXC010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0766 SAMN34056839-rid18772233.denovo.18, whole genome shotgun sequence	36764..37406		enterobacteriales	IncFII(S)	100	262 / 262	DAQCXC010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0766 SAMN34056839-rid18772233.denovo.18, whole genome shotgun sequence	49147..49408		enterobacteriales	IncI2(Delta)	100	316 / 316	DAQCXC010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0766 SAMN34056839-rid18772233.denovo.17, whole genome shotgun sequence	7333..7648																																		avrA	DAQCXC010000002.1	553220..554089	99.54	870	0						
GCA_032541265.1_PDT001814841.1_genomic.fna	Salmonella_enterica	0.5193	439.901 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,IncFIB(S),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0765 SAMN34056838-rid18773453.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXD010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0765 SAMN34056838-rid18773453.guided.12, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.16	154 / 154	DAQCXD010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0765 SAMN34056838-rid18773453.denovo.21, whole genome shotgun sequence	1417..1570	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXD010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0765 SAMN34056838-rid18773453.denovo.16, whole genome shotgun sequence	36764..37406		enterobacteriales	IncFII(S)	100	262 / 262	DAQCXD010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0765 SAMN34056838-rid18773453.denovo.16, whole genome shotgun sequence	49147..49408		enterobacteriales	IncI2(Delta)	100	316 / 316	DAQCXD010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0765 SAMN34056838-rid18773453.denovo.15, whole genome shotgun sequence	9331..9646																																		avrA	DAQCXD010000002.1	553220..554089	99.54	870	0						
GCA_032541285.1_PDT001814839.1_genomic.fna	Salmonella_enterica	0.5206	406.342 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0767 SAMN34056840-rid18772223.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXE010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0767 SAMN34056840-rid18772223.guided.13, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXE010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0767 SAMN34056840-rid18772223.denovo.16, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXE010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0767 SAMN34056840-rid18772223.denovo.16, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXE010000002.1	553226..554095	99.54	870	0						
GCA_032541305.1_PDT001814837.1_genomic.fna	Salmonella_enterica	0.5208	400.972 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0769 SAMN34056842-rid18772203.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXG010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0769 SAMN34056842-rid18772203.guided.17, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXG010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0769 SAMN34056842-rid18772203.denovo.16, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXG010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0769 SAMN34056842-rid18772203.denovo.16, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXG010000002.1	553220..554089	99.54	870	0						
GCA_032541325.1_PDT001814838.1_genomic.fna	Salmonella_enterica	0.5195	400.972 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0768 SAMN34056841-rid18772213.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXF010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0768 SAMN34056841-rid18772213.guided.21, whole genome shotgun sequence	2050..2487	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXF010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0768 SAMN34056841-rid18772213.denovo.16, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXF010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0768 SAMN34056841-rid18772213.denovo.16, whole genome shotgun sequence	49147..49408		enterobacteriales	IncI2(Delta)	100	316 / 316	DAQCXF010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0768 SAMN34056841-rid18772213.denovo.15, whole genome shotgun sequence	11841..12156																																									avrA	DAQCXF010000002.1	553220..554089	99.54	870	0						
GCA_032541345.1_PDT001814835.1_genomic.fna	Salmonella_enterica	0.5208	406.342 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0770 SAMN34056843-rid18772183.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXI010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0770 SAMN34056843-rid18772183.guided.21, whole genome shotgun sequence	3899..4336	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXI010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0770 SAMN34056843-rid18772183.denovo.16, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXI010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0770 SAMN34056843-rid18772183.denovo.16, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXI010000002.1	553087..553956	99.54	870	0						
GCA_032541365.1_PDT001814836.1_genomic.fna	Salmonella_enterica	0.5205	406.342 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0634 SAMN34056825-rid18772193.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXH010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0634 SAMN34056825-rid18772193.guided.13, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXH010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0634 SAMN34056825-rid18772193.denovo.16, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXH010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0634 SAMN34056825-rid18772193.denovo.16, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXH010000002.1	553220..554089	99.54	870	0						
GCA_032541385.1_PDT001814834.1_genomic.fna	Salmonella_enterica	0.5207	509.494 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0772 SAMN34056844-rid18772173.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0772 SAMN34056844-rid18772173.guided.16, whole genome shotgun sequence	29192..29629	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXJ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0772 SAMN34056844-rid18772173.denovo.15, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXJ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0772 SAMN34056844-rid18772173.denovo.15, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXJ010000002.1	553220..554089	99.54	870	0						
GCA_032541405.1_PDT001814833.1_genomic.fna	Salmonella_enterica	0.5207	406.342 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0773 SAMN34056845-rid18773443.denovo.01, whole genome shotgun sequence	389028..389465	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXK010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0773 SAMN34056845-rid18773443.guided.25, whole genome shotgun sequence	116..553	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXK010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0773 SAMN34056845-rid18773443.denovo.17, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXK010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0773 SAMN34056845-rid18773443.denovo.17, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXK010000002.1	553220..554089	99.54	870	0						
GCA_032541425.1_PDT001814832.1_genomic.fna	Salmonella_enterica	0.5196	400.972 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0774 SAMN34056846-rid18772163.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXL010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0774 SAMN34056846-rid18772163.guided.16, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXL010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0774 SAMN34056846-rid18772163.denovo.18, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXL010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0774 SAMN34056846-rid18772163.denovo.18, whole genome shotgun sequence	49147..49408		enterobacteriales	IncI2(Delta)	100	316 / 316	DAQCXL010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0774 SAMN34056846-rid18772163.denovo.17, whole genome shotgun sequence	9295..9610																																									avrA	DAQCXL010000002.1	553220..554089	99.54	870	0						
GCA_032541445.1_PDT001814831.1_genomic.fna	Salmonella_enterica	0.5205	440.237 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0775 SAMN34056847-rid18773433.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXN010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0775 SAMN34056847-rid18773433.guided.13, whole genome shotgun sequence	42294..42731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXN010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0775 SAMN34056847-rid18773433.denovo.16, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXN010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0775 SAMN34056847-rid18773433.denovo.16, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXN010000002.1	553220..554089	99.54	870	0						
GCA_032541465.1_PDT001814829.1_genomic.fna	Salmonella_enterica	0.5206	406.342 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1017 SAMN34056849-rid18772143.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXO010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1017 SAMN34056849-rid18772143.guided.14, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXO010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1017 SAMN34056849-rid18772143.denovo.17, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXO010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1017 SAMN34056849-rid18772143.denovo.17, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXO010000002.1	553220..554089	99.54	870	0						
GCA_032541485.1_PDT001814830.1_genomic.fna	Salmonella_enterica	0.5206	400.972 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1016 SAMN34056848-rid18772153.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXM010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1016 SAMN34056848-rid18772153.guided.14, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXM010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1016 SAMN34056848-rid18772153.denovo.17, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXM010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1016 SAMN34056848-rid18772153.denovo.17, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXM010000002.1	553220..554089	99.54	870	0						
GCA_032541505.1_PDT001814828.1_genomic.fna	Salmonella_enterica	0.5205	406.342 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1060 SAMN34056850-rid18772133.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXP010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1060 SAMN34056850-rid18772133.guided.14, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXP010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1060 SAMN34056850-rid18772133.denovo.16, whole genome shotgun sequence	47962..48604	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXP010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1060 SAMN34056850-rid18772133.denovo.16, whole genome shotgun sequence	3709..3970																																																avrA	DAQCXP010000002.1	553220..554089	99.54	870	0						
GCA_032541525.1_PDT001814823.1_genomic.fna	Salmonella_enterica	0.5193	406.331 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,IncFIB(S),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH608 isolate ATCC BAA-1045 SAMN34056854-rid18772083.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXU010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH608 isolate ATCC BAA-1045 SAMN34056854-rid18772083.guided.13, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.16	154 / 154	DAQCXU010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH608 isolate ATCC BAA-1045 SAMN34056854-rid18772083.denovo.22, whole genome shotgun sequence	1417..1570	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXU010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH608 isolate ATCC BAA-1045 SAMN34056854-rid18772083.denovo.17, whole genome shotgun sequence	36764..37406		enterobacteriales	IncFII(S)	100	262 / 262	DAQCXU010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH608 isolate ATCC BAA-1045 SAMN34056854-rid18772083.denovo.17, whole genome shotgun sequence	49147..49408		enterobacteriales	IncI2(Delta)	100	316 / 316	DAQCXU010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH608 isolate ATCC BAA-1045 SAMN34056854-rid18772083.denovo.16, whole genome shotgun sequence	9331..9646																																		avrA	DAQCXU010000002.1	553220..554089	99.54	870	0						
GCA_032541545.1_PDT001814827.1_genomic.fna	Salmonella_enterica	0.5207	400.972 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1061 SAMN34056851-rid18772123.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXQ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1061 SAMN34056851-rid18772123.guided.17, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXQ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1061 SAMN34056851-rid18772123.denovo.15, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXQ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1061 SAMN34056851-rid18772123.denovo.15, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXQ010000002.1	553210..554079	99.54	870	0						
GCA_032541555.1_PDT001814826.1_genomic.fna	Salmonella_enterica	0.5208	406.972 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1062 SAMN34056852-rid18772113.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXT010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1062 SAMN34056852-rid18772113.guided.15, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXT010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1062 SAMN34056852-rid18772113.denovo.16, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXT010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1062 SAMN34056852-rid18772113.denovo.16, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXT010000002.1	553220..554089	99.54	870	0						
GCA_032541585.1_PDT001814824.1_genomic.fna	Salmonella_enterica	0.5208	440.546 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQCXS010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1024 isolate RM4635, G04-101 SAMN34056853-rid18772093.denovo.04, whole genome shotgun sequence	158936..159373	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQCXS010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1024 isolate RM4635, G04-101 SAMN34056853-rid18772093.guided.15, whole genome shotgun sequence	7828..8265	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXS010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1024 isolate RM4635, G04-101 SAMN34056853-rid18772093.denovo.16, whole genome shotgun sequence	36763..37405	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXS010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1024 isolate RM4635, G04-101 SAMN34056853-rid18772093.denovo.16, whole genome shotgun sequence	42855..43116																																																avrA	DAQCXS010000001.1	553196..554065	99.54	870	0						
GCA_032541605.1_PDT001814825.1_genomic.fna	Salmonella_enterica	0.5207	440.237 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0672 SAMN34056826-rid18772103.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXR010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0672 SAMN34056826-rid18772103.guided.14, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXR010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0672 SAMN34056826-rid18772103.denovo.15, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXR010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0672 SAMN34056826-rid18772103.denovo.15, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXR010000002.1	553220..554089	99.54	870	0						
GCA_032541625.1_PDT001814820.1_genomic.fna	Salmonella_enterica	0.5207	412.005 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0675 SAMN34056829-rid18772053.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXX010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0675 SAMN34056829-rid18772053.guided.16, whole genome shotgun sequence	36197..36634	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXX010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0675 SAMN34056829-rid18772053.denovo.15, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXX010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0675 SAMN34056829-rid18772053.denovo.15, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXX010000002.1	553220..554089	99.54	870	0						
GCA_032541645.1_PDT001814821.1_genomic.fna	Salmonella_enterica	0.5209	515.127 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0674 SAMN34056828-rid18772063.denovo.01, whole genome shotgun sequence	389028..389465	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXW010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0674 SAMN34056828-rid18772063.guided.19, whole genome shotgun sequence	16310..16747	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXW010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0674 SAMN34056828-rid18772063.denovo.08, whole genome shotgun sequence	174111..174753	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXW010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0674 SAMN34056828-rid18772063.denovo.08, whole genome shotgun sequence	129858..130119																																																avrA	DAQCXW010000002.1	553220..554089	99.54	870	0						
GCA_032541665.1_PDT001814822.1_genomic.fna	Salmonella_enterica	0.5208	440.237 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXV010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0673 SAMN34056827-rid18772073.denovo.02, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXV010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0673 SAMN34056827-rid18772073.guided.17, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXV010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0673 SAMN34056827-rid18772073.denovo.16, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXV010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0673 SAMN34056827-rid18772073.denovo.16, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXV010000003.1	553220..554089	99.54	870	0						
GCA_032541705.1_PDT001814819.1_genomic.fna	Salmonella_enterica	0.5208	509.49 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCXY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0676 SAMN34056830-rid18772043.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCXY010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0676 SAMN34056830-rid18772043.guided.20, whole genome shotgun sequence	15528..15965	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCXY010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0676 SAMN34056830-rid18772043.denovo.15, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCXY010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0676 SAMN34056830-rid18772043.denovo.15, whole genome shotgun sequence	49147..49408																																																avrA	DAQCXY010000002.1	553220..554089	99.54	870	0						
GCA_032541725.1_PDT001814818.1_genomic.fna	Salmonella_enterica	0.5194	400.806 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCYA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0677 SAMN34056831-rid18772033.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCYA010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0677 SAMN34056831-rid18772033.guided.20, whole genome shotgun sequence	5262..5699	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCYA010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0677 SAMN34056831-rid18772033.denovo.17, whole genome shotgun sequence	47962..48604	enterobacteriales	IncFII(S)	100	262 / 262	DAQCYA010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0677 SAMN34056831-rid18772033.denovo.17, whole genome shotgun sequence	3709..3970		enterobacteriales	IncI2(Delta)	100	316 / 316	DAQCYA010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0677 SAMN34056831-rid18772033.denovo.16, whole genome shotgun sequence	4839..5154																																									avrA	DAQCYA010000002.1	553220..554089	99.54	870	0						
GCA_032541765.1_PDT001814817.1_genomic.fna	Salmonella_enterica	0.5206	440.237 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQCYB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0678 SAMN34056832-rid18772023.denovo.01, whole genome shotgun sequence	292737..293174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQCYB010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0678 SAMN34056832-rid18772023.guided.14, whole genome shotgun sequence	20970..21407	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQCYB010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0678 SAMN34056832-rid18772023.denovo.15, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQCYB010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH0678 SAMN34056832-rid18772023.denovo.15, whole genome shotgun sequence	49147..49408																																																avrA	DAQCYB010000002.1	553220..554089	99.54	870	0						
GCA_032541805.1_PDT001814687.1_genomic.fna	Salmonella_enterica	0.5205	312.582 KB	7	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	2	Col440I,IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNPSO010000001.1 Salmonella enterica strain PNUSAS362131 SAMN36405001-rid18771913.denovo.01, whole genome shotgun sequence	386822..387259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNPSO010000043.1 Salmonella enterica strain PNUSAS362131 SAMN36405001-rid18771913.guided.24, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNPSO010000016.1 Salmonella enterica strain PNUSAS362131 SAMN36405001-rid18771913.denovo.16, whole genome shotgun sequence	18501..19706	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPSO010000045.1 Salmonella enterica strain PNUSAS362131 SAMN36405001-rid18771913.guided.29, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	ABNPSO010000034.1 Salmonella enterica strain PNUSAS362131 SAMN36405001-rid18771913.denovo.38, whole genome shotgun sequence	3345..3457	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPSO010000016.1 Salmonella enterica strain PNUSAS362131 SAMN36405001-rid18771913.denovo.16, whole genome shotgun sequence	26092..26233		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPSO010000045.1 Salmonella enterica strain PNUSAS362131 SAMN36405001-rid18771913.guided.29, whole genome shotgun sequence	3169..3310																																									avrA	ABNPSO010000010.1	145338..146207	99.425	870	0						
GCA_032541845.1_PDT001814683.1_genomic.fna	Salmonella_enterica	0.522	375.102 KB	5	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNPSQ010000002.1 Salmonella enterica strain PNUSAS362129 SAMN36404993-rid18771873.denovo.02, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNPSQ010000031.1 Salmonella enterica strain PNUSAS362129 SAMN36404993-rid18771873.guided.25, whole genome shotgun sequence	10650..11087	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNPSQ010000001.1	602359..603227	99.195	870	0						
GCA_032541865.1_PDT001814685.1_genomic.fna	Salmonella_enterica	0.5219	301.754 KB	4	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPSP010000001.1 Salmonella enterica strain PNUSAS362127 SAMN36404990-rid18771893.denovo.01, whole genome shotgun sequence	831212..831649	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPSP010000034.1 Salmonella enterica strain PNUSAS362127 SAMN36404990-rid18771893.guided.14, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032541885.1_PDT001814681.1_genomic.fna	Salmonella_enterica	0.5214	238.552 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPSR010000001.1 Salmonella enterica strain PNUSAS361719 SAMN36404060-rid18771853.denovo.01, whole genome shotgun sequence	145261..145698	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNPSR010000039.1 Salmonella enterica strain PNUSAS361719 SAMN36404060-rid18771853.denovo.44, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNPSR010000042.1 Salmonella enterica strain PNUSAS361719 SAMN36404060-rid18771853.denovo.48, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPSR010000042.1 Salmonella enterica strain PNUSAS361719 SAMN36404060-rid18771853.denovo.48, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNPSR010000074.1 Salmonella enterica strain PNUSAS361719 SAMN36404060-rid18771853.guided.30, whole genome shotgun sequence	25074..25511	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNPSR010000078.1 Salmonella enterica strain PNUSAS361719 SAMN36404060-rid18771853.guided.43, whole genome shotgun sequence	1..816	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNPSR010000079.1 Salmonella enterica strain PNUSAS361719 SAMN36404060-rid18771853.guided.47, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPSR010000079.1 Salmonella enterica strain PNUSAS361719 SAMN36404060-rid18771853.guided.47, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNPSR010000051.1 Salmonella enterica strain PNUSAS361719 SAMN36404060-rid18771853.denovo.58, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNPSR010000080.1 Salmonella enterica strain PNUSAS361719 SAMN36404060-rid18771853.guided.57, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNPSR010000042.1 Salmonella enterica strain PNUSAS361719 SAMN36404060-rid18771853.denovo.48, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNPSR010000079.1 Salmonella enterica strain PNUSAS361719 SAMN36404060-rid18771853.guided.47, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNPSR010000033.1 Salmonella enterica strain PNUSAS361719 SAMN36404060-rid18771853.denovo.35, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPSR010000077.1 Salmonella enterica strain PNUSAS361719 SAMN36404060-rid18771853.guided.39, whole genome shotgun sequence	4117..5322	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																					avrA	ABNPSR010000002.1	434746..435615	99.885	870	0						
GCA_032541945.1_PDT001814682.1_genomic.fna	Salmonella_enterica	0.5205	363.668 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-141,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPSS010000007.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.denovo.07, whole genome shotgun sequence	145214..145651	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPSS010000021.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.denovo.22, whole genome shotgun sequence	31733..32569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPSS010000021.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.denovo.22, whole genome shotgun sequence	30930..31733	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNPSS010000057.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.guided.24, whole genome shotgun sequence	4832..5269	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPSS010000059.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.guided.28, whole genome shotgun sequence	9803..10639	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPSS010000059.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.guided.28, whole genome shotgun sequence	9000..9803	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNPSS010000021.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.denovo.22, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	751/861	ABNPSS010000047.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.denovo.53, whole genome shotgun sequence	549..1299	Unknown Beta-lactam	KP050491	blaTEM-206	100	751/861	ABNPSS010000047.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.denovo.53, whole genome shotgun sequence	549..1299	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	100	751/861	ABNPSS010000047.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.denovo.53, whole genome shotgun sequence	549..1299	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	100	751/861	ABNPSS010000047.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.denovo.53, whole genome shotgun sequence	549..1299	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNPSS010000058.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.guided.26, whole genome shotgun sequence	20217..21362	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	782/861	ABNPSS010000061.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.guided.52, whole genome shotgun sequence	1..782	Unknown Beta-lactam	KP050491	blaTEM-206	100	782/861	ABNPSS010000061.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.guided.52, whole genome shotgun sequence	1..782	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	782/861	ABNPSS010000061.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.guided.52, whole genome shotgun sequence	1..782	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNPSS010000021.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.denovo.22, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNPSS010000059.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.guided.28, whole genome shotgun sequence	8124..8939	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNPSS010000021.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.denovo.22, whole genome shotgun sequence	33830..35104	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNPSS010000059.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.guided.28, whole genome shotgun sequence	11900..13174	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																							enterobacteriales	IncC	100	417 / 417	ABNPSS010000028.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.denovo.33, whole genome shotgun sequence	1072..1488	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNPSS010000044.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.denovo.49, whole genome shotgun sequence	796..1055		enterobacteriales	IncX1	98.66	374 / 374	ABNPSS010000032.1 Salmonella enterica strain PNUSAS361714 SAMN36404057-rid18771863.denovo.37, whole genome shotgun sequence	4149..4522																																									avrA	ABNPSS010000001.1	487320..488188	99.54	870	0						
GCA_032541985.1_PDT001814645.1_genomic.fna	Salmonella_enterica	0.5214	400.829 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPSW010000001.1 Salmonella enterica strain PNUSAS362125 SAMN36403474-rid18771803.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPSW010000030.1 Salmonella enterica strain PNUSAS362125 SAMN36403474-rid18771803.guided.25, whole genome shotgun sequence	781..1218	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPSW010000016.1 Salmonella enterica strain PNUSAS362125 SAMN36403474-rid18771803.denovo.16, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABNPSW010000020.1 Salmonella enterica strain PNUSAS362125 SAMN36403474-rid18771803.denovo.21, whole genome shotgun sequence	3400..3661																																																avrA	ABNPSW010000002.1	174837..175706	99.54	870	0						
GCA_032542005.1_PDT001814643.1_genomic.fna	Salmonella_enterica	0.5212	155.049 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPTA010000001.1 Salmonella enterica strain PNUSAS362118 SAMN36403476-rid18771783.denovo.01, whole genome shotgun sequence	312686..313123	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNPTA010000073.1 Salmonella enterica strain PNUSAS362118 SAMN36403476-rid18771783.guided.37, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNPTA010000014.1 Salmonella enterica strain PNUSAS362118 SAMN36403476-rid18771783.denovo.14, whole genome shotgun sequence	108775..109417																																																																	
GCA_032542025.1_PDT001814642.1_genomic.fna	Salmonella_enterica	0.5219	188.28 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPSX010000001.1 Salmonella enterica strain PNUSAS362123 SAMN36403473-rid18771773.denovo.01, whole genome shotgun sequence	408817..409254	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNPSX010000055.1 Salmonella enterica strain PNUSAS362123 SAMN36403473-rid18771773.guided.44, whole genome shotgun sequence	3253..3690	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032542045.1_PDT001814644.1_genomic.fna	Salmonella_enterica	0.5219	257.492 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPSZ010000001.1 Salmonella enterica strain PNUSAS362120 SAMN36403361-rid18771793.denovo.01, whole genome shotgun sequence	380094..380531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPSZ010000052.1 Salmonella enterica strain PNUSAS362120 SAMN36403361-rid18771793.guided.29, whole genome shotgun sequence	23297..23734	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPSZ010000019.1 Salmonella enterica strain PNUSAS362120 SAMN36403361-rid18771793.denovo.19, whole genome shotgun sequence	40553..41195	enterobacteriales	IncFII(S)	100	262 / 262	ABNPSZ010000019.1 Salmonella enterica strain PNUSAS362120 SAMN36403361-rid18771793.denovo.19, whole genome shotgun sequence	56280..56541																																																avrA	ABNPSZ010000005.1	94133..95002	99.885	870	0						
GCA_032542065.1_PDT001814641.1_genomic.fna	Salmonella_enterica	0.5211	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPSY010000001.1 Salmonella enterica strain PNUSAS362117 SAMN36403364-rid18771763.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPSY010000030.1 Salmonella enterica strain PNUSAS362117 SAMN36403364-rid18771763.guided.20, whole genome shotgun sequence	16663..17100	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPSY010000019.1 Salmonella enterica strain PNUSAS362117 SAMN36403364-rid18771763.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNPSY010000021.1 Salmonella enterica strain PNUSAS362117 SAMN36403364-rid18771763.denovo.24, whole genome shotgun sequence	3403..3664																																																avrA	ABNPSY010000002.1	553636..554505	99.54	870	0						
GCA_032542085.1_PDT001814640.1_genomic.fna	Salmonella_enterica	0.5211	562.423 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNPTB010000001.1 Salmonella enterica strain PNUSAS362121 SAMN36403478-rid18771753.denovo.01, whole genome shotgun sequence	510335..510772	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNPTB010000029.1 Salmonella enterica strain PNUSAS362121 SAMN36403478-rid18771753.guided.22, whole genome shotgun sequence	5249..5686	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPTB010000002.1	544781..545649	99.425	870	0						
GCA_032542105.1_PDT001814639.1_genomic.fna	Salmonella_enterica	0.5216	225.553 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPTE010000002.1 Salmonella enterica strain PNUSAS362116 SAMN36403363-rid18771743.denovo.02, whole genome shotgun sequence	145192..145629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPTE010000055.1 Salmonella enterica strain PNUSAS362116 SAMN36403363-rid18771743.guided.31, whole genome shotgun sequence	31599..32036	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPTE010000021.1 Salmonella enterica strain PNUSAS362116 SAMN36403363-rid18771743.denovo.21, whole genome shotgun sequence	36061..36703	enterobacteriales	IncFII(S)	100	262 / 262	ABNPTE010000021.1 Salmonella enterica strain PNUSAS362116 SAMN36403363-rid18771743.denovo.21, whole genome shotgun sequence	51789..52050																																																avrA	ABNPTE010000001.1	450786..451655	99.885	870	0						
GCA_032542165.1_PDT001814636.1_genomic.fna	Salmonella_enterica	0.5212	580.966 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPTG010000001.1 Salmonella enterica strain PNUSAS361983 SAMN36402104-rid18771713.denovo.01, whole genome shotgun sequence	477388..477825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPTG010000024.1 Salmonella enterica strain PNUSAS361983 SAMN36402104-rid18771713.guided.16, whole genome shotgun sequence	8005..8442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPTG010000002.1	776679..777549	99.196	871	0						
GCA_032542205.1_PDT001814632.1_genomic.fna	Salmonella_enterica	0.5229	285.731 KB	5	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPTI010000001.1 Salmonella enterica strain PNUSAS361981 SAMN36402101-rid18771673.denovo.01, whole genome shotgun sequence	170009..170446	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPTI010000031.1 Salmonella enterica strain PNUSAS361981 SAMN36402101-rid18771673.guided.18, whole genome shotgun sequence	42396..42833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032542245.1_PDT001814633.1_genomic.fna	Salmonella_enterica	0.5231	218.293 KB	7	aroC_14,dnaN_178,hemD_3,hisD_12,purE_182,sucA_171,thrA_143	603	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_178	hemD	100	100	hemD_3	hisD	100	100	hisD_12	purE	100	100	purE_182	sucA	100	100	sucA_171	thrA	100	100	thrA_143	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNPTH010000003.1 Salmonella enterica strain PNUSAS361986 SAMN36402107-rid18771683.denovo.03, whole genome shotgun sequence	354722..355159	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNPTH010000041.1 Salmonella enterica strain PNUSAS361986 SAMN36402107-rid18771683.guided.29, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPTH010000002.1	94217..95086	99.77	870	0						
GCA_032542265.1_PDT001814629.1_genomic.fna	Salmonella_enterica	0.5219	682.789 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNPTL010000001.1 Salmonella enterica strain PNUSAS361984 SAMN36402102-rid18771643.denovo.01, whole genome shotgun sequence	486999..487436	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNPTL010000033.1 Salmonella enterica strain PNUSAS361984 SAMN36402102-rid18771643.guided.16, whole genome shotgun sequence	5089..5526	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPTL010000002.1	544631..545499	99.425	870	0						
GCA_032542305.1_PDT001814628.1_genomic.fna	Salmonella_enterica	0.5218	455.235 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNPTM010000001.1 Salmonella enterica strain PNUSAS361987 SAMN36402105-rid18771633.denovo.01, whole genome shotgun sequence	486999..487436	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNPTM010000037.1 Salmonella enterica strain PNUSAS361987 SAMN36402105-rid18771633.guided.17, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPTM010000002.1	498766..499634	99.425	870	0						
GCA_032542325.1_PDT001814626.1_genomic.fna	Salmonella_enterica	0.5213	322.061 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPTO010000001.1 Salmonella enterica strain PNUSAS361988 SAMN36402106-rid18771613.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPTO010000039.1 Salmonella enterica strain PNUSAS361988 SAMN36402106-rid18771613.guided.22, whole genome shotgun sequence	20587..21024	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPTO010000026.1 Salmonella enterica strain PNUSAS361988 SAMN36402106-rid18771613.denovo.28, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNPTO010000026.1 Salmonella enterica strain PNUSAS361988 SAMN36402106-rid18771613.denovo.28, whole genome shotgun sequence	9325..9586																																																avrA	ABNPTO010000002.1	208698..209567	99.885	870	0						
GCA_032542335.1_PDT001814627.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPTN010000001.1 Salmonella enterica strain PNUSAS361989 SAMN36402108-rid18771623.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPTN010000025.1 Salmonella enterica strain PNUSAS361989 SAMN36402108-rid18771623.guided.16, whole genome shotgun sequence	13035..13472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPTN010000017.1 Salmonella enterica strain PNUSAS361989 SAMN36402108-rid18771623.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNPTN010000018.1 Salmonella enterica strain PNUSAS361989 SAMN36402108-rid18771623.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABNPTN010000002.1	553642..554511	99.54	870	0						
GCA_032542365.1_PDT001814625.1_genomic.fna	Salmonella_enterica	0.5221	437.192 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPTQ010000001.1 Salmonella enterica strain PNUSAS361980 SAMN36402100-rid18771603.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPTQ010000028.1 Salmonella enterica strain PNUSAS361980 SAMN36402100-rid18771603.guided.19, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNPTQ010000022.1 Salmonella enterica strain PNUSAS361980 SAMN36402100-rid18771603.denovo.25, whole genome shotgun sequence	547..675																																																						avrA	ABNPTQ010000009.1	39478..40347	98.966	870	0						
GCA_032542385.1_PDT001814623.1_genomic.fna	Salmonella_enterica	0.5202	456.28 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	7	aac(6')-Iaa,aadA2,aadA1,aac(6')-Iaa,aadA2,aadA1,cmlA1,cmlA1,cmlA1,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	3	IncI1-I(Alpha),IncI1-I(Alpha),IncL,IncX3	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNPTR010000001.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.denovo.01, whole genome shotgun sequence	511938..512375	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNPTR010000011.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.denovo.11, whole genome shotgun sequence	72373..73164	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNPTR010000011.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.denovo.11, whole genome shotgun sequence	74778..75569	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	96.58	438/438	ABNPTR010000031.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.guided.17, whole genome shotgun sequence	28953..29390	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNPTR010000035.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.guided.27, whole genome shotgun sequence	4466..5257	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNPTR010000036.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.guided.28, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	cmlA1	99.92	1260/1260	ABNPTR010000011.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.denovo.11, whole genome shotgun sequence	73426..74685	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNPTR010000035.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.guided.27, whole genome shotgun sequence	5519..6778	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNPTR010000036.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.guided.28, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	sul3	100	792/792	ABNPTR010000011.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.denovo.11, whole genome shotgun sequence	76740..77531	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNPTR010000036.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.guided.28, whole genome shotgun sequence	3770..4561	Sulfamethoxazole	AJ459418	tet(A)	100	1200/1200	ABNPTR010000011.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.denovo.11, whole genome shotgun sequence	84448..85647	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPTR010000032.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.guided.24, whole genome shotgun sequence	616..1815	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABNPTR010000011.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.denovo.11, whole genome shotgun sequence	71468..71965	Trimethoprim	AM040708	dfrA12	100	498/498	ABNPTR010000035.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.guided.27, whole genome shotgun sequence	3561..4058	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPTR010000011.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.denovo.11, whole genome shotgun sequence	91010..91151	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPTR010000032.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.guided.24, whole genome shotgun sequence	7178..7319		enterobacteriales	IncL	97.14	664 / 661	ABNPTR010000016.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.denovo.16, whole genome shotgun sequence	25793..26455		enterobacteriales	IncX3	98.66	374 / 374	ABNPTR010000019.1 Salmonella enterica strain PNUSAS361985 SAMN36402103-rid18771583.denovo.20, whole genome shotgun sequence	27050..27423																																		avrA	ABNPTR010000002.1	406369..407237	99.425	870	0						
GCA_032542405.1_PDT001814624.1_genomic.fna	Salmonella_enterica	0.5215	176.194 KB	10	aroC_41,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	2129	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNPTP010000001.1 Salmonella enterica strain PNUSAS361982 SAMN36402099-rid18771593.denovo.01, whole genome shotgun sequence	371033..371470	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNPTP010000053.1 Salmonella enterica strain PNUSAS361982 SAMN36402099-rid18771593.guided.25, whole genome shotgun sequence	42680..43117	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032543105.1_PDT001814542.1_genomic.fna	Salmonella_enterica	0.5219	444.309 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPUB010000001.1 Salmonella enterica strain PNUSAS362064 SAMN36390897-rid18770823.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNPUB010000032.1 Salmonella enterica strain PNUSAS362064 SAMN36390897-rid18770823.guided.12, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPUB010000014.1 Salmonella enterica strain PNUSAS362064 SAMN36390897-rid18770823.denovo.16, whole genome shotgun sequence	68657..68798																																																						avrA	ABNPUB010000002.1	149828..150697	99.655	870	0						
GCA_032543165.1_PDT001814539.1_genomic.fna	Salmonella_enterica	0.5208	653.087 KB	3	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNPUF010000001.1 Salmonella enterica strain PNUSAS362080 SAMN36392229-rid18771153.denovo.01, whole genome shotgun sequence	618945..619382	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNPUF010000018.1 Salmonella enterica strain PNUSAS362080 SAMN36392229-rid18771153.guided.11, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPUF010000003.1	105395..106264	99.54	870	0						
GCA_032543205.1_PDT001814537.1_genomic.fna	Salmonella_enterica	0.5213	182.62 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPUG010000001.1 Salmonella enterica strain PNUSAS361820 SAMN36383935-rid18770793.denovo.01, whole genome shotgun sequence	145229..145666	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPUG010000051.1 Salmonella enterica strain PNUSAS361820 SAMN36383935-rid18770793.guided.23, whole genome shotgun sequence	20685..21122	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNPUG010000003.1	39878..40746	99.77	870	0						
GCA_032543225.1_PDT001814536.1_genomic.fna	Salmonella_enterica	0.522	558.057 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNPUH010000008.1 Salmonella enterica strain PNUSAS362077 SAMN36392274-rid18770783.denovo.08, whole genome shotgun sequence	70822..71259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNPUH010000025.1 Salmonella enterica strain PNUSAS362077 SAMN36392274-rid18770783.guided.18, whole genome shotgun sequence	1722..2159	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPUH010000003.1	94228..95097	98.966	870	0						
GCA_032543245.1_PDT001814532.1_genomic.fna	Salmonella_enterica	0.5199	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNPUK010000010.1 Salmonella enterica strain PNUSAS362062 SAMN36390933-rid18770743.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNPUK010000056.1 Salmonella enterica strain PNUSAS362062 SAMN36390933-rid18770743.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	ABNPUK010000018.1 Salmonella enterica strain PNUSAS362062 SAMN36390933-rid18770743.denovo.18, whole genome shotgun sequence	23493..24367																																																																	
GCA_032543265.1_PDT001814535.1_genomic.fna	Salmonella_enterica	0.5218	201.844 KB	8	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNPUI010000013.1 Salmonella enterica strain PNUSAS361821 SAMN36383932-rid18770773.denovo.13, whole genome shotgun sequence	70815..71252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNPUI010000042.1 Salmonella enterica strain PNUSAS361821 SAMN36383932-rid18770773.guided.33, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPUI010000001.1	95458..96327	98.966	870	0						
GCA_032543285.1_PDT001814533.1_genomic.fna	Salmonella_enterica	0.5202	221.466 KB	7	aroC_10,dnaN_129,hemD_647,hisD_153,purE_8,sucA_9,thrA_22	4329	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_647	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNPUJ010000002.1 Salmonella enterica strain PNUSAS361554 SAMN36383967-rid18770753.denovo.02, whole genome shotgun sequence	270854..271291	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNPUJ010000046.1 Salmonella enterica strain PNUSAS361554 SAMN36383967-rid18770753.guided.29, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNPUJ010000021.1 Salmonella enterica strain PNUSAS361554 SAMN36383967-rid18770753.denovo.21, whole genome shotgun sequence	62736..63378																																																																	
GCA_032543305.1_PDT001814531.1_genomic.fna	Salmonella_enterica	0.5214	761.796 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPUM010000001.1 Salmonella enterica strain PNUSAS362083 SAMN36393809-rid18770733.denovo.01, whole genome shotgun sequence	473685..474122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNPUM010000031.1 Salmonella enterica strain PNUSAS362083 SAMN36393809-rid18770733.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI2(Delta)	98.42	316 / 316	ABNPUM010000014.1 Salmonella enterica strain PNUSAS362083 SAMN36393809-rid18770733.denovo.15, whole genome shotgun sequence	30735..31050																																																						avrA	ABNPUM010000004.1	151330..152199	99.77	870	0						
GCA_032543345.1_PDT001814528.1_genomic.fna	Salmonella_enterica	0.5199	406.576 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPUN010000001.1 Salmonella enterica strain PNUSAS362084 SAMN36393789-rid18770703.denovo.01, whole genome shotgun sequence	733719..734156	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPUN010000029.1 Salmonella enterica strain PNUSAS362084 SAMN36393789-rid18770703.guided.25, whole genome shotgun sequence	328..765	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPUN010000019.1 Salmonella enterica strain PNUSAS362084 SAMN36393789-rid18770703.denovo.19, whole genome shotgun sequence	18089..18731	enterobacteriales	IncFII(S)	100	262 / 262	ABNPUN010000019.1 Salmonella enterica strain PNUSAS362084 SAMN36393789-rid18770703.denovo.19, whole genome shotgun sequence	3388..3649		enterobacteriales	IncX1	98.67	377 / 377	ABNPUN010000015.1 Salmonella enterica strain PNUSAS362084 SAMN36393789-rid18770703.denovo.15, whole genome shotgun sequence	6390..6766																																									avrA	ABNPUN010000002.1	553108..553977	99.54	870	0						
GCA_032543365.1_PDT001814525.1_genomic.fna	Salmonella_enterica	0.5208	222.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aadA2,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aadA2,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B),dfrA14,dfrA12,dfrA12,dfrA12,dfrA14,dfrA12,dfrA12,dfrA12	0		3	Col(pHAD28),Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPUP010000001.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.denovo.01, whole genome shotgun sequence	593321..593758	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPUP010000034.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.denovo.39, whole genome shotgun sequence	4585..5421	Streptomycin	M28829	aph(3'')-Ib	100	505/804	ABNPUP010000034.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.denovo.39, whole genome shotgun sequence	6264..6768	Streptomycin	AF321551	aph(3'')-Ib	99.2957746478873	284/804	ABNPUP010000034.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.denovo.39, whole genome shotgun sequence	5421..5702	Streptomycin	AF321551	aadA2	100	792/792	ABNPUP010000045.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.denovo.52, whole genome shotgun sequence	124..915	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	100	438/438	ABNPUP010000062.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.guided.29, whole genome shotgun sequence	11052..11489	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPUP010000065.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.guided.38, whole genome shotgun sequence	5934..6770	Streptomycin	M28829	aph(3'')-Ib	100	529/804	ABNPUP010000065.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.guided.38, whole genome shotgun sequence	4563..5091	Streptomycin	AF321551	aph(3'')-Ib	99.2957746478873	284/804	ABNPUP010000065.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.guided.38, whole genome shotgun sequence	5653..5934	Streptomycin	AF321551	aadA2	100	792/792	ABNPUP010000067.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.guided.51, whole genome shotgun sequence	874..1665	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABNPUP010000038.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.denovo.44, whole genome shotgun sequence	32..892	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNPUP010000066.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.guided.43, whole genome shotgun sequence	3315..4175	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNPUP010000034.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.denovo.39, whole genome shotgun sequence	85..900	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNPUP010000065.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.guided.38, whole genome shotgun sequence	3687..4502	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNPUP010000031.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.denovo.34, whole genome shotgun sequence	12337..13542	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPUP010000063.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.guided.33, whole genome shotgun sequence	12378..13583	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNPUP010000034.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.denovo.39, whole genome shotgun sequence	5771..6244	Trimethoprim	AF393510	dfrA12	100	425/498	ABNPUP010000045.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.denovo.52, whole genome shotgun sequence	1323..1747	Trimethoprim	AM040708	dfrA12	100	425/498	ABNPUP010000045.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.denovo.52, whole genome shotgun sequence	1323..1747	Trimethoprim	FR875302	dfrA12	100	425/498	ABNPUP010000045.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.denovo.52, whole genome shotgun sequence	1323..1747	Trimethoprim	EU650399	dfrA14	100	474/474	ABNPUP010000065.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.guided.38, whole genome shotgun sequence	5111..5584	Trimethoprim	AF393510	dfrA12	100	429/498	ABNPUP010000067.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.guided.51, whole genome shotgun sequence	38..466	Trimethoprim	AM040708	dfrA12	100	429/498	ABNPUP010000067.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.guided.51, whole genome shotgun sequence	38..466	Trimethoprim	FR875302	dfrA12	100	429/498	ABNPUP010000067.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.guided.51, whole genome shotgun sequence	38..466	Trimethoprim	EU650399																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNPUP010000034.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.denovo.39, whole genome shotgun sequence	1427..1557	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNPUP010000065.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.guided.38, whole genome shotgun sequence	3030..3160		enterobacteriales	IncFIB(S)	100	643 / 643	ABNPUP010000024.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.denovo.25, whole genome shotgun sequence	16028..16670		enterobacteriales	IncFII(S)	100	262 / 262	ABNPUP010000024.1 Salmonella enterica strain PNUSAS362055 SAMN36390912-rid18770673.denovo.25, whole genome shotgun sequence	31754..32015																																		avrA	ABNPUP010000004.1	144248..145117	99.885	870	0						
GCA_032543385.1_PDT001814522.1_genomic.fna	Salmonella_enterica	0.5219	396.03 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNPUU010000010.1 Salmonella enterica strain PNUSAS362070 SAMN36390885-rid18770643.denovo.10, whole genome shotgun sequence	70815..71252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNPUU010000027.1 Salmonella enterica strain PNUSAS362070 SAMN36390885-rid18770643.guided.22, whole genome shotgun sequence	12663..13100	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPUU010000002.1	131917..132786	98.966	870	0						
GCA_032543425.1_PDT001814517.1_genomic.fna	Salmonella_enterica	0.5217	257.567 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPUZ010000002.1 Salmonella enterica strain PNUSAS362090 SAMN36393785-rid18770593.denovo.02, whole genome shotgun sequence	207384..207821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPUZ010000047.1 Salmonella enterica strain PNUSAS362090 SAMN36393785-rid18770593.guided.30, whole genome shotgun sequence	17107..17544	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	100	643 / 643	ABNPUZ010000022.1 Salmonella enterica strain PNUSAS362090 SAMN36393785-rid18770593.denovo.22, whole genome shotgun sequence	44722..45364	enterobacteriales	IncFII(S)	100	262 / 262	ABNPUZ010000022.1 Salmonella enterica strain PNUSAS362090 SAMN36393785-rid18770593.denovo.22, whole genome shotgun sequence	29376..29637																																																avrA	ABNPUZ010000001.1	452062..452931	99.885	870	0						
GCA_032543465.1_PDT001814516.1_genomic.fna	Salmonella_enterica	0.5218	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPUW010000004.1 Salmonella enterica strain PNUSAS362058 SAMN36390858-rid18770583.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPUW010000038.1 Salmonella enterica strain PNUSAS362058 SAMN36390858-rid18770583.guided.27, whole genome shotgun sequence	34040..34477	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPUW010000015.1 Salmonella enterica strain PNUSAS362058 SAMN36390858-rid18770583.denovo.15, whole genome shotgun sequence	14681..15323	enterobacteriales	IncFII(S)	100	262 / 262	ABNPUW010000015.1 Salmonella enterica strain PNUSAS362058 SAMN36390858-rid18770583.denovo.15, whole genome shotgun sequence	30408..30669																																																avrA	ABNPUW010000001.1	446697..447565	100	869	0						
GCA_032543485.1_PDT001814514.1_genomic.fna	Salmonella_enterica	0.5222	263.407 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPUY010000001.1 Salmonella enterica strain PNUSAS361824 SAMN36383929-rid18770563.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNPUY010000035.1 Salmonella enterica strain PNUSAS361824 SAMN36383929-rid18770563.guided.20, whole genome shotgun sequence	13016..13453	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPUY010000003.1	39430..40299	99.655	870	0						
GCA_032543505.1_PDT001814519.1_genomic.fna	Salmonella_enterica	0.5223	496.405 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPUT010000001.1 Salmonella enterica strain PNUSAS361550 SAMN36383958-rid18770613.denovo.01, whole genome shotgun sequence	769279..769716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPUT010000030.1 Salmonella enterica strain PNUSAS361550 SAMN36383958-rid18770613.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPUT010000002.1	129887..130756	98.966	870	0						
GCA_032543525.1_PDT001814526.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPUQ010000001.1 Salmonella enterica strain PNUSAS362089 SAMN36393792-rid18770683.denovo.01, whole genome shotgun sequence	176119..176556	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPUQ010000027.1 Salmonella enterica strain PNUSAS362089 SAMN36393792-rid18770683.guided.21, whole genome shotgun sequence	4612..5049	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPUQ010000021.1 Salmonella enterica strain PNUSAS362089 SAMN36393792-rid18770683.denovo.22, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNPUQ010000022.1 Salmonella enterica strain PNUSAS362089 SAMN36393792-rid18770683.denovo.23, whole genome shotgun sequence	3402..3663																																																avrA	ABNPUQ010000002.1	553635..554504	99.54	870	0						
GCA_032543545.1_PDT001814527.1_genomic.fna	Salmonella_enterica	0.5216	257.84 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPUO010000001.1 Salmonella enterica strain PNUSAS362088 SAMN36393783-rid18770693.denovo.01, whole genome shotgun sequence	392648..393085	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPUO010000054.1 Salmonella enterica strain PNUSAS362088 SAMN36393783-rid18770693.guided.38, whole genome shotgun sequence	554..991	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPUO010000026.1 Salmonella enterica strain PNUSAS362088 SAMN36393783-rid18770693.denovo.26, whole genome shotgun sequence	44709..45351	enterobacteriales	IncFII(S)	100	262 / 262	ABNPUO010000026.1 Salmonella enterica strain PNUSAS362088 SAMN36393783-rid18770693.denovo.26, whole genome shotgun sequence	29363..29624		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPUO010000020.1 Salmonella enterica strain PNUSAS362088 SAMN36393783-rid18770693.denovo.20, whole genome shotgun sequence	68647..68788																																									avrA	ABNPUO010000002.1	209222..210090	100	869	0						
GCA_032543565.1_PDT001814520.1_genomic.fna	Salmonella_enterica	0.5211	123.028 KB	13	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNPUV010000004.1 Salmonella enterica strain PNUSAS362087 SAMN36393798-rid18770623.denovo.004, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNPUV010000103.1 Salmonella enterica strain PNUSAS362087 SAMN36393798-rid18770623.guided.072, whole genome shotgun sequence	1526..1963	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABNPUV010000032.1 Salmonella enterica strain PNUSAS362087 SAMN36393798-rid18770623.denovo.032, whole genome shotgun sequence	43514..43775																																																						avrA	ABNPUV010000003.1	93997..94866	98.851	870	0						
GCA_032543665.1_PDT001814509.1_genomic.fna	Salmonella_enterica	0.5219	687.61 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPVF010000001.1 Salmonella enterica strain PNUSAS362067 SAMN36390853-rid18770513.denovo.01, whole genome shotgun sequence	645054..645491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNPVF010000027.1 Salmonella enterica strain PNUSAS362067 SAMN36390853-rid18770513.guided.19, whole genome shotgun sequence	3912..4349	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPVF010000003.1	546694..547562	99.655	870	0						
GCA_032543705.1_PDT001814508.1_genomic.fna	Salmonella_enterica	0.5235	393.406 KB	5	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPVE010000001.1 Salmonella enterica strain PNUSAS362082 SAMN36393802-rid18770503.denovo.01, whole genome shotgun sequence	473685..474122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNPVE010000043.1 Salmonella enterica strain PNUSAS362082 SAMN36393802-rid18770503.guided.18, whole genome shotgun sequence	1759..2196	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNPVE010000003.1	151320..152189	99.77	870	0						
GCA_032543725.1_PDT001814506.1_genomic.fna	Salmonella_enterica	0.5213	225.555 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPVH010000003.1 Salmonella enterica strain PNUSAS362085 SAMN36393780-rid18770483.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPVH010000054.1 Salmonella enterica strain PNUSAS362085 SAMN36393780-rid18770483.guided.43, whole genome shotgun sequence	55..492	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPVH010000019.1 Salmonella enterica strain PNUSAS362085 SAMN36393780-rid18770483.denovo.19, whole genome shotgun sequence	44750..45392	enterobacteriales	IncFII(S)	100	262 / 262	ABNPVH010000019.1 Salmonella enterica strain PNUSAS362085 SAMN36393780-rid18770483.denovo.19, whole genome shotgun sequence	29405..29666		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNPVH010000022.1 Salmonella enterica strain PNUSAS362085 SAMN36393780-rid18770483.denovo.22, whole genome shotgun sequence	71152..71293																																									avrA	ABNPVH010000004.1	175543..176411	100	869	0						
GCA_032543745.1_PDT001814507.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPVJ010000001.1 Salmonella enterica strain PNUSAS362081 SAMN36392253-rid18770493.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPVJ010000021.1 Salmonella enterica strain PNUSAS362081 SAMN36392253-rid18770493.guided.13, whole genome shotgun sequence	24975..25412	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPVJ010000012.1 Salmonella enterica strain PNUSAS362081 SAMN36392253-rid18770493.denovo.14, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNPVJ010000014.1 Salmonella enterica strain PNUSAS362081 SAMN36392253-rid18770493.denovo.17, whole genome shotgun sequence	3395..3656																																																avrA	ABNPVJ010000002.1	541453..542322	99.54	870	0						
GCA_032543765.1_PDT001814502.1_genomic.fna	Salmonella_enterica	0.5209	395.881 KB	6	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPVK010000002.1 Salmonella enterica strain PNUSAS361705 SAMN36381556-rid18770443.denovo.02, whole genome shotgun sequence	277512..277949	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNPVK010000082.1 Salmonella enterica strain PNUSAS361705 SAMN36381556-rid18770443.guided.36, whole genome shotgun sequence	11191..11628	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNPVK010000020.1 Salmonella enterica strain PNUSAS361705 SAMN36381556-rid18770443.denovo.21, whole genome shotgun sequence	20207..20849	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNPVK010000025.1 Salmonella enterica strain PNUSAS361705 SAMN36381556-rid18770443.denovo.26, whole genome shotgun sequence	18874..19456																																																avrA	ABNPVK010000005.1	125274..126143	99.425	870	0						
GCA_032543805.1_PDT001814500.1_genomic.fna	Salmonella_enterica	0.5221	338.603 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPVL010000001.1 Salmonella enterica strain PNUSAS362053 SAMN36390889-rid18770423.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNPVL010000030.1 Salmonella enterica strain PNUSAS362053 SAMN36390889-rid18770423.guided.16, whole genome shotgun sequence	18005..18442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPVL010000002.1	149828..150697	99.54	870	0						
GCA_032543845.1_PDT001814498.1_genomic.fna	Salmonella_enterica	0.5199	174.753 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaTEM-1B,blaCTX-M-15,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA7,dfrA7	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNPVN010000011.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.denovo.11, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPVN010000047.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.denovo.53, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNPVN010000047.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.denovo.53, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	ABNPVN010000066.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.guided.29, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPVN010000069.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.guided.52, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNPVN010000069.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.guided.52, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaCTX-M-15	100	876/876	ABNPVN010000020.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.denovo.21, whole genome shotgun sequence	8668..9543	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	ABNPVN010000052.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.denovo.59, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-15	100	876/876	ABNPVN010000067.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.guided.40, whole genome shotgun sequence	8569..9444	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	ABNPVN010000070.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.guided.58, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	ABNPVN010000055.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.denovo.63, whole genome shotgun sequence	223..882	Chloramphenicol	V00622	catA1	99.85	660/660	ABNPVN010000071.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.guided.62, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	ABNPVN010000041.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.denovo.46, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	ABNPVN010000047.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.denovo.53, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABNPVN010000068.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.guided.45, whole genome shotgun sequence	6459..7298	Sulfamethoxazole	U12338	sul2	100	816/816	ABNPVN010000069.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.guided.52, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	ABNPVN010000041.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.denovo.46, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	ABNPVN010000068.1 Salmonella enterica strain PNUSAS362078 SAMN36392245-rid18770403.guided.45, whole genome shotgun sequence	5415..5888	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032543885.1_PDT001814497.1_genomic.fna	Salmonella_enterica	0.5207	418.996 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPVP010000003.1 Salmonella enterica strain PNUSAS362069 SAMN36390922-rid18770393.denovo.03, whole genome shotgun sequence	277512..277949	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNPVP010000070.1 Salmonella enterica strain PNUSAS362069 SAMN36390922-rid18770393.guided.25, whole genome shotgun sequence	4613..5050	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNPVP010000021.1 Salmonella enterica strain PNUSAS362069 SAMN36390922-rid18770393.denovo.22, whole genome shotgun sequence	19947..20589	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNPVP010000023.1 Salmonella enterica strain PNUSAS362069 SAMN36390922-rid18770393.denovo.24, whole genome shotgun sequence	18874..19456																																																avrA	ABNPVP010000005.1	125274..126143	99.425	870	0						
GCA_032543905.1_PDT001814494.1_genomic.fna	Salmonella_enterica	0.5215	333.002 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aadA1,aadA1,aac(6')-Iaa,aph(3')-Ia,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPVO010000001.1 Salmonella enterica strain PNUSAS362079 SAMN36392270-rid18770363.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPVO010000024.1 Salmonella enterica strain PNUSAS362079 SAMN36392270-rid18770363.denovo.24, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPVO010000024.1 Salmonella enterica strain PNUSAS362079 SAMN36392270-rid18770363.denovo.24, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNPVO010000040.1 Salmonella enterica strain PNUSAS362079 SAMN36392270-rid18770363.denovo.46, whole genome shotgun sequence	93..908	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	aadA1	99.75	792/792	ABNPVO010000045.1 Salmonella enterica strain PNUSAS362079 SAMN36392270-rid18770363.guided.29, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPVO010000045.1 Salmonella enterica strain PNUSAS362079 SAMN36392270-rid18770363.guided.29, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNPVO010000047.1 Salmonella enterica strain PNUSAS362079 SAMN36392270-rid18770363.guided.33, whole genome shotgun sequence	12209..12646	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNPVO010000049.1 Salmonella enterica strain PNUSAS362079 SAMN36392270-rid18770363.guided.45, whole genome shotgun sequence	127..942	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	sul1	100	840/840	ABNPVO010000024.1 Salmonella enterica strain PNUSAS362079 SAMN36392270-rid18770363.denovo.24, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPVO010000045.1 Salmonella enterica strain PNUSAS362079 SAMN36392270-rid18770363.guided.29, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPVO010000024.1 Salmonella enterica strain PNUSAS362079 SAMN36392270-rid18770363.denovo.24, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPVO010000045.1 Salmonella enterica strain PNUSAS362079 SAMN36392270-rid18770363.guided.29, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNPVO010000032.1 Salmonella enterica strain PNUSAS362079 SAMN36392270-rid18770363.denovo.36, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNPVO010000048.1 Salmonella enterica strain PNUSAS362079 SAMN36392270-rid18770363.guided.43, whole genome shotgun sequence	95..568	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPVO010000028.1 Salmonella enterica strain PNUSAS362079 SAMN36392270-rid18770363.denovo.30, whole genome shotgun sequence	9109..9668																																																						avrA	ABNPVO010000003.1	151353..152222	99.655	870	0						
GCA_032543925.1_PDT001814495.1_genomic.fna	Salmonella_enterica	0.5221	755.657 KB	2	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPVQ010000001.1 Salmonella enterica strain PNUSAS362061 SAMN36390868-rid18770373.denovo.01, whole genome shotgun sequence	1369418..1369855	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNPVQ010000017.1 Salmonella enterica strain PNUSAS362061 SAMN36390868-rid18770373.guided.13, whole genome shotgun sequence	5111..5548	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNPVQ010000003.1	553343..554212	99.655	870	0						
GCA_032543945.1_PDT001814491.1_genomic.fna	Salmonella_enterica	0.5215	275.099 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPVS010000001.1 Salmonella enterica strain PNUSAS362072 SAMN36392235-rid18770333.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPVS010000033.1 Salmonella enterica strain PNUSAS362072 SAMN36392235-rid18770333.guided.16, whole genome shotgun sequence	9696..10133	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNPVS010000003.1	208425..209293	99.77	870	0						
GCA_032543985.1_PDT001814487.1_genomic.fna	Salmonella_enterica	0.5212	476.591 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPVW010000001.1 Salmonella enterica strain PNUSAS362002 SAMN36388858-rid18770293.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPVW010000028.1 Salmonella enterica strain PNUSAS362002 SAMN36388858-rid18770293.guided.15, whole genome shotgun sequence	11142..11579	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPVW010000017.1 Salmonella enterica strain PNUSAS362002 SAMN36388858-rid18770293.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNPVW010000014.1 Salmonella enterica strain PNUSAS362002 SAMN36388858-rid18770293.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNPVW010000002.1	553636..554505	99.54	870	0						
GCA_032544055.1_PDT001814493.1_genomic.fna	Salmonella_enterica	0.5223	821.618 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPVR010000001.1 Salmonella enterica strain PNUSAS362065 SAMN36390904-rid18770353.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNPVR010000017.1 Salmonella enterica strain PNUSAS362065 SAMN36390904-rid18770353.guided.15, whole genome shotgun sequence	395..832	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPVR010000003.1	562081..562951	99.656	871	0						
GCA_032544145.1_PDT001814484.1_genomic.fna	Salmonella_enterica	0.517	350.093 KB	6	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNPVX010000008.1 Salmonella enterica strain PNUSAS361948 SAMN36384285-rid18770263.denovo.08, whole genome shotgun sequence	7487..7924	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNPVX010000065.1 Salmonella enterica strain PNUSAS361948 SAMN36384285-rid18770263.guided.53, whole genome shotgun sequence	1389..1826	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNPVX010000011.1 Salmonella enterica strain PNUSAS361948 SAMN36384285-rid18770263.denovo.11, whole genome shotgun sequence	117013..117655	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNPVX010000033.1 Salmonella enterica strain PNUSAS361948 SAMN36384285-rid18770263.denovo.33, whole genome shotgun sequence	4656..5238																																																											
GCA_032544165.1_PDT001814489.1_genomic.fna	Salmonella_enterica	0.5216	723.706 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPVY010000001.1 Salmonella enterica strain PNUSAS362073 SAMN36392265-rid18770313.denovo.01, whole genome shotgun sequence	172127..172564	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNPVY010000026.1 Salmonella enterica strain PNUSAS362073 SAMN36392265-rid18770313.guided.09, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNPVY010000015.1 Salmonella enterica strain PNUSAS362073 SAMN36392265-rid18770313.denovo.18, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNPVY010000029.1 Salmonella enterica strain PNUSAS362073 SAMN36392265-rid18770313.guided.20, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNPVY010000015.1 Salmonella enterica strain PNUSAS362073 SAMN36392265-rid18770313.denovo.18, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNPVY010000030.1 Salmonella enterica strain PNUSAS362073 SAMN36392265-rid18770313.guided.22, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNPVY010000015.1 Salmonella enterica strain PNUSAS362073 SAMN36392265-rid18770313.denovo.18, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPVY010000029.1 Salmonella enterica strain PNUSAS362073 SAMN36392265-rid18770313.guided.20, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNPVY010000015.1 Salmonella enterica strain PNUSAS362073 SAMN36392265-rid18770313.denovo.18, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNPVY010000029.1 Salmonella enterica strain PNUSAS362073 SAMN36392265-rid18770313.guided.20, whole genome shotgun sequence	9840..11114	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNPVY010000015.1 Salmonella enterica strain PNUSAS362073 SAMN36392265-rid18770313.denovo.18, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNPVY010000029.1 Salmonella enterica strain PNUSAS362073 SAMN36392265-rid18770313.guided.20, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNPVY010000014.1 Salmonella enterica strain PNUSAS362073 SAMN36392265-rid18770313.denovo.17, whole genome shotgun sequence	4434..4684																																																						avrA	ABNPVY010000003.1	553473..554342	99.77	870	0						
GCA_032544185.1_PDT001814488.1_genomic.fna	Salmonella_enterica	0.5196	249.435 KB	6	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	IncFIB(pB171),IncFII(Yp),IncI1-I(Alpha),IncL	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNPWA010000003.1 Salmonella enterica strain PNUSAS361772 SAMN36381939-rid18770303.denovo.03, whole genome shotgun sequence	390386..390823	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNPWA010000041.1 Salmonella enterica strain PNUSAS361772 SAMN36381939-rid18770303.guided.26, whole genome shotgun sequence	21872..22309	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.38	643 / 643	ABNPWA010000022.1 Salmonella enterica strain PNUSAS361772 SAMN36381939-rid18770303.denovo.22, whole genome shotgun sequence	1929..2571	enterobacteriales	IncFII(Yp)	91.3	230 / 230	ABNPWA010000022.1 Salmonella enterica strain PNUSAS361772 SAMN36381939-rid18770303.denovo.22, whole genome shotgun sequence	61024..61250		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNPWA010000020.1 Salmonella enterica strain PNUSAS361772 SAMN36381939-rid18770303.denovo.20, whole genome shotgun sequence	61971..62112		enterobacteriales	IncL	97.14	664 / 661	ABNPWA010000023.1 Salmonella enterica strain PNUSAS361772 SAMN36381939-rid18770303.denovo.23, whole genome shotgun sequence	16128..16790																																		avrA	ABNPWA010000001.1	199076..199944	99.425	870	0						
GCA_032544265.1_PDT001814478.1_genomic.fna	Salmonella_enterica	0.5212	406.435 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPWH010000001.1 Salmonella enterica strain PNUSAS361731 SAMN36381823-rid18770203.denovo.01, whole genome shotgun sequence	846131..846568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPWH010000028.1 Salmonella enterica strain PNUSAS361731 SAMN36381823-rid18770203.guided.21, whole genome shotgun sequence	11141..11578	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPWH010000015.1 Salmonella enterica strain PNUSAS361731 SAMN36381823-rid18770203.denovo.16, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNPWH010000015.1 Salmonella enterica strain PNUSAS361731 SAMN36381823-rid18770203.denovo.16, whole genome shotgun sequence	12910..13171																																																avrA	ABNPWH010000002.1	553196..554065	99.54	870	0						
GCA_032544285.1_PDT001814474.1_genomic.fna	Salmonella_enterica	0.5229	175.605 KB	9	aroC_397,dnaN_380,hemD_121,hisD_99,purE_411,sucA_9,thrA_406	1370	7:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_397	dnaN	100	100	dnaN_380	hemD	100	100	hemD_121	hisD	100	100	hisD_99	purE	100	100	purE_411	sucA	100	100	sucA_9	thrA	100	100	thrA_406	7	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Oslo		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPWJ010000003.1 Salmonella enterica strain PNUSAS362074 SAMN36392261-rid18770163.denovo.03, whole genome shotgun sequence	77687..78124	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPWJ010000050.1 Salmonella enterica strain PNUSAS362074 SAMN36392261-rid18770163.guided.40, whole genome shotgun sequence	4293..4730	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNPWJ010000023.1 Salmonella enterica strain PNUSAS362074 SAMN36392261-rid18770163.denovo.23, whole genome shotgun sequence	65915..66056																																																						avrA	ABNPWJ010000014.1	94134..95003	99.77	870	0						
GCA_032544325.1_PDT001814471.1_genomic.fna	Salmonella_enterica	0.522	341.368 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPWM010000004.1 Salmonella enterica strain PNUSAS362075 SAMN36392225-rid18770133.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPWM010000040.1 Salmonella enterica strain PNUSAS362075 SAMN36392225-rid18770133.guided.28, whole genome shotgun sequence	17371..17808	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPWM010000015.1 Salmonella enterica strain PNUSAS362075 SAMN36392225-rid18770133.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNPWM010000015.1 Salmonella enterica strain PNUSAS362075 SAMN36392225-rid18770133.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNPWM010000001.1	446742..447610	100	869	0						
GCA_032544345.1_PDT001814477.1_genomic.fna	Salmonella_enterica	0.5207	857.041 KB	2	aroC_10,dnaN_71,hemD_43,hisD_12,purE_15,sucA_20,thrA_18	4851	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_71	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_18	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNPWI010000001.1 Salmonella enterica strain PNUSAS361842 SAMN36385321-rid18770193.denovo.01, whole genome shotgun sequence	1324697..1325134	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNPWI010000019.1 Salmonella enterica strain PNUSAS361842 SAMN36385321-rid18770193.guided.08, whole genome shotgun sequence	44300..44737	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPWI010000003.1	173508..174377	99.54	870	0						
GCA_032544385.1_PDT001814468.1_genomic.fna	Salmonella_enterica	0.5214	222.836 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPWN010000002.1 Salmonella enterica strain PNUSAS361733 SAMN36381826-rid18770103.denovo.02, whole genome shotgun sequence	310265..310702	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPWN010000033.1 Salmonella enterica strain PNUSAS361733 SAMN36381826-rid18770103.denovo.36, whole genome shotgun sequence	6786..7622	Streptomycin	M28829	aph(3'')-Ib	100	780/804	ABNPWN010000033.1 Salmonella enterica strain PNUSAS361733 SAMN36381826-rid18770103.denovo.36, whole genome shotgun sequence	7622..8401	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNPWN010000044.1 Salmonella enterica strain PNUSAS361733 SAMN36381826-rid18770103.guided.25, whole genome shotgun sequence	20578..21015	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPWN010000047.1 Salmonella enterica strain PNUSAS361733 SAMN36381826-rid18770103.guided.37, whole genome shotgun sequence	3388..4224	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPWN010000047.1 Salmonella enterica strain PNUSAS361733 SAMN36381826-rid18770103.guided.37, whole genome shotgun sequence	2585..3388	Streptomycin	AF321551	sul2	100	816/816	ABNPWN010000033.1 Salmonella enterica strain PNUSAS361733 SAMN36381826-rid18770103.denovo.36, whole genome shotgun sequence	85..900	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNPWN010000047.1 Salmonella enterica strain PNUSAS361733 SAMN36381826-rid18770103.guided.37, whole genome shotgun sequence	1709..2524	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNPWN010000033.1 Salmonella enterica strain PNUSAS361733 SAMN36381826-rid18770103.denovo.36, whole genome shotgun sequence	4251..5525	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNPWN010000047.1 Salmonella enterica strain PNUSAS361733 SAMN36381826-rid18770103.guided.37, whole genome shotgun sequence	5485..6759	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNPWN010000033.1 Salmonella enterica strain PNUSAS361733 SAMN36381826-rid18770103.denovo.36, whole genome shotgun sequence	1427..1557	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNPWN010000047.1 Salmonella enterica strain PNUSAS361733 SAMN36381826-rid18770103.guided.37, whole genome shotgun sequence	1052..1182		enterobacteriales	IncFIB(S)	100	643 / 643	ABNPWN010000028.1 Salmonella enterica strain PNUSAS361733 SAMN36381826-rid18770103.denovo.29, whole genome shotgun sequence	24671..25313		enterobacteriales	IncFII(S)	100	262 / 262	ABNPWN010000028.1 Salmonella enterica strain PNUSAS361733 SAMN36381826-rid18770103.denovo.29, whole genome shotgun sequence	9325..9586																																		avrA	ABNPWN010000001.1	508249..509118	99.885	870	0						
GCA_032544405.1_PDT001814467.1_genomic.fna	Salmonella_enterica	0.5212	397.255 KB	4	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPWO010000003.1 Salmonella enterica strain 23WA06GT01-S1 SAMN36381819-rid18770093.denovo.03, whole genome shotgun sequence	495939..496376	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPWO010000018.1 Salmonella enterica strain 23WA06GT01-S1 SAMN36381819-rid18770093.denovo.22, whole genome shotgun sequence	5973..6809	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNPWO010000018.1 Salmonella enterica strain 23WA06GT01-S1 SAMN36381819-rid18770093.denovo.22, whole genome shotgun sequence	6809..7611	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPWO010000018.1 Salmonella enterica strain 23WA06GT01-S1 SAMN36381819-rid18770093.denovo.22, whole genome shotgun sequence	6809..7612	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPWO010000018.1 Salmonella enterica strain 23WA06GT01-S1 SAMN36381819-rid18770093.denovo.22, whole genome shotgun sequence	6809..7612	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPWO010000018.1 Salmonella enterica strain 23WA06GT01-S1 SAMN36381819-rid18770093.denovo.22, whole genome shotgun sequence	6809..7612	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNPWO010000030.1 Salmonella enterica strain 23WA06GT01-S1 SAMN36381819-rid18770093.guided.19, whole genome shotgun sequence	8565..9002	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPWO010000032.1 Salmonella enterica strain 23WA06GT01-S1 SAMN36381819-rid18770093.guided.21, whole genome shotgun sequence	1512..2348	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNPWO010000032.1 Salmonella enterica strain 23WA06GT01-S1 SAMN36381819-rid18770093.guided.21, whole genome shotgun sequence	710..1512	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPWO010000032.1 Salmonella enterica strain 23WA06GT01-S1 SAMN36381819-rid18770093.guided.21, whole genome shotgun sequence	709..1512	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPWO010000032.1 Salmonella enterica strain 23WA06GT01-S1 SAMN36381819-rid18770093.guided.21, whole genome shotgun sequence	709..1512	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPWO010000032.1 Salmonella enterica strain 23WA06GT01-S1 SAMN36381819-rid18770093.guided.21, whole genome shotgun sequence	709..1512	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPWO010000008.1	140341..141210	99.655	870	0						
GCA_032544445.1_PDT001814465.1_genomic.fna	Salmonella_enterica	0.5211	489.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPWQ010000001.1 Salmonella enterica strain PNUSAS361360 SAMN36384435-rid18770073.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPWQ010000021.1 Salmonella enterica strain PNUSAS361360 SAMN36384435-rid18770073.guided.12, whole genome shotgun sequence	36006..36443	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPWQ010000012.1 Salmonella enterica strain PNUSAS361360 SAMN36384435-rid18770073.denovo.14, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABNPWQ010000015.1 Salmonella enterica strain PNUSAS361360 SAMN36384435-rid18770073.denovo.18, whole genome shotgun sequence	3384..3645																																																avrA	ABNPWQ010000002.1	553547..554416	99.54	870	0						
GCA_032544565.1_PDT001814457.1_genomic.fna	Salmonella_enterica	0.5213	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPWX010000001.1 Salmonella enterica strain PNUSAS361697 SAMN36381643-rid18769993.denovo.01, whole genome shotgun sequence	771820..772257	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPWX010000023.1 Salmonella enterica strain PNUSAS361697 SAMN36381643-rid18769993.guided.12, whole genome shotgun sequence	41783..42220	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPWX010000012.1 Salmonella enterica strain PNUSAS361697 SAMN36381643-rid18769993.denovo.13, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNPWX010000015.1 Salmonella enterica strain PNUSAS361697 SAMN36381643-rid18769993.denovo.17, whole genome shotgun sequence	3429..3690																																																avrA	ABNPWX010000002.1	553636..554505	99.54	870	0						
GCA_032544585.1_PDT001814455.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPWY010000001.1 Salmonella enterica strain PNUSAS362076 SAMN36392222-rid18769973.denovo.01, whole genome shotgun sequence	774212..774649	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPWY010000021.1 Salmonella enterica strain PNUSAS362076 SAMN36392222-rid18769973.guided.15, whole genome shotgun sequence	2052..2489	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPWY010000013.1 Salmonella enterica strain PNUSAS362076 SAMN36392222-rid18769973.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNPWY010000015.1 Salmonella enterica strain PNUSAS362076 SAMN36392222-rid18769973.denovo.18, whole genome shotgun sequence	3446..3707																																																avrA	ABNPWY010000002.1	553200..554069	99.54	870	0						
GCA_032544705.1_PDT001814438.1_genomic.fna	Salmonella_enterica	0.522	285.838 KB	6	aroC_50,dnaN_80,hemD_25,hisD_85,purE_432,sucA_58,thrA_4	1607	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_432	sucA	100	100	sucA_58	thrA	100	100	thrA_4	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPXL010000001.1 Salmonella enterica strain PNUSAS361768 SAMN36381911-rid18769213.denovo.01, whole genome shotgun sequence	661863..662300	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPXL010000051.1 Salmonella enterica strain PNUSAS361768 SAMN36381911-rid18769213.guided.29, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNPXL010000026.1 Salmonella enterica strain PNUSAS361768 SAMN36381911-rid18769213.denovo.27, whole genome shotgun sequence	11447..12089																																																																	
GCA_032544845.1_PDT001814436.1_genomic.fna	Salmonella_enterica	0.5214	406.793 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPXM010000001.1 Salmonella enterica strain PNUSAS361732 SAMN36381829-rid18769203.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPXM010000030.1 Salmonella enterica strain PNUSAS361732 SAMN36381829-rid18769203.guided.24, whole genome shotgun sequence	5085..5522	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPXM010000019.1 Salmonella enterica strain PNUSAS361732 SAMN36381829-rid18769203.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNPXM010000021.1 Salmonella enterica strain PNUSAS361732 SAMN36381829-rid18769203.denovo.23, whole genome shotgun sequence	3415..3676																																																avrA	ABNPXM010000002.1	553636..554505	99.54	870	0						
GCA_032544865.1_PDT001814441.1_genomic.fna	Salmonella_enterica	0.5224	83.34 KB	23	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPXI010000021.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.denovo.021, whole genome shotgun sequence	75561..75998	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPXI010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.denovo.065, whole genome shotgun sequence	134..925	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPXI010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.denovo.065, whole genome shotgun sequence	134..925	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNPXI010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.denovo.107, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPXI010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.denovo.107, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNPXI010000151.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.guided.034, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPXI010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.guided.102, whole genome shotgun sequence	175..966	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPXI010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.guided.102, whole genome shotgun sequence	175..966	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNPXI010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.guided.105, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNPXI010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.guided.105, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNPXI010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.denovo.116, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNPXI010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.guided.117, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNPXI010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.denovo.065, whole genome shotgun sequence	1430..2269	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPXI010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.guided.102, whole genome shotgun sequence	1471..2310	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPXI010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.denovo.065, whole genome shotgun sequence	14786..15985	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPXI010000154.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.guided.085, whole genome shotgun sequence	4028..5227	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNPXI010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.denovo.104, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNPXI010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.guided.113, whole genome shotgun sequence	2097..2570	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPXI010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323279 SAMN36381914-rid18769223.denovo.078, whole genome shotgun sequence	14014..14573																																																						avrA	ABNPXI010000015.1	95072..95941	99.655	870	0						
GCA_032544885.1_PDT001814446.1_genomic.fna	Salmonella_enterica	0.5232	58.345 KB	27	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	-:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	-	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPXE010000022.1 Salmonella enterica subsp. enterica serovar Braenderup strain FSIS12323281 SAMN36382127-rid18769883.denovo.022, whole genome shotgun sequence	52445..52882	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPXE010000149.1 Salmonella enterica subsp. enterica serovar Braenderup strain FSIS12323281 SAMN36382127-rid18769883.guided.065, whole genome shotgun sequence	24926..25363	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNPXE010000128.1 Salmonella enterica subsp. enterica serovar Braenderup strain FSIS12323281 SAMN36382127-rid18769883.denovo.131, whole genome shotgun sequence	547..675																																																						avrA	ABNPXE010000034.1	48677..49546	98.966	870	0						
GCA_032544905.1_PDT001814435.1_genomic.fna	Salmonella_enterica	0.5211	394.336 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNPXN010000001.1 Salmonella enterica strain PNUSAS362071 SAMN36392240-rid18769813.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNPXN010000029.1 Salmonella enterica strain PNUSAS362071 SAMN36392240-rid18769813.guided.14, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPXN010000002.1	144915..145784	99.31	870	0						
GCA_032544945.1_PDT001814433.1_genomic.fna	Salmonella_enterica	0.5223	444.116 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPXQ010000001.1 Salmonella enterica strain PNUSAS361700 SAMN36381646-rid18769193.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNPXQ010000039.1 Salmonella enterica strain PNUSAS361700 SAMN36381646-rid18769193.guided.25, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNPXQ010000015.1 Salmonella enterica strain PNUSAS361700 SAMN36381646-rid18769193.denovo.15, whole genome shotgun sequence	69781..69922																																																						avrA	ABNPXQ010000002.1	149829..150698	99.655	870	0						
GCA_032545045.1_PDT001814425.1_genomic.fna	Salmonella_enterica	0.5205	406.452 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		2	IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPXX010000001.1 Salmonella enterica strain PNUSAS361761 SAMN36381933-rid18769753.denovo.01, whole genome shotgun sequence	774552..774989	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPXX010000015.1 Salmonella enterica strain PNUSAS361761 SAMN36381933-rid18769753.denovo.16, whole genome shotgun sequence	19060..19896	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPXX010000015.1 Salmonella enterica strain PNUSAS361761 SAMN36381933-rid18769753.denovo.16, whole genome shotgun sequence	19896..20699	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNPXX010000024.1 Salmonella enterica strain PNUSAS361761 SAMN36381933-rid18769753.guided.15, whole genome shotgun sequence	5138..5575	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPXX010000026.1 Salmonella enterica strain PNUSAS361761 SAMN36381933-rid18769753.guided.21, whole genome shotgun sequence	7213..8049	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPXX010000026.1 Salmonella enterica strain PNUSAS361761 SAMN36381933-rid18769753.guided.21, whole genome shotgun sequence	6410..7213	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNPXX010000020.1 Salmonella enterica strain PNUSAS361761 SAMN36381933-rid18769753.denovo.25, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNPXX010000028.1 Salmonella enterica strain PNUSAS361761 SAMN36381933-rid18769753.guided.24, whole genome shotgun sequence	3944..4804	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNPXX010000015.1 Salmonella enterica strain PNUSAS361761 SAMN36381933-rid18769753.denovo.16, whole genome shotgun sequence	20760..21575	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNPXX010000026.1 Salmonella enterica strain PNUSAS361761 SAMN36381933-rid18769753.guided.21, whole genome shotgun sequence	5534..6349	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNPXX010000015.1 Salmonella enterica strain PNUSAS361761 SAMN36381933-rid18769753.denovo.16, whole genome shotgun sequence	25088..26287	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPXX010000026.1 Salmonella enterica strain PNUSAS361761 SAMN36381933-rid18769753.guided.21, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncN	100	514 / 514	ABNPXX010000015.1 Salmonella enterica strain PNUSAS361761 SAMN36381933-rid18769753.denovo.16, whole genome shotgun sequence	777..1290	enterobacteriales	IncX1	98.66	374 / 374	ABNPXX010000014.1 Salmonella enterica strain PNUSAS361761 SAMN36381933-rid18769753.denovo.14, whole genome shotgun sequence	6057..6430																																																avrA	ABNPXX010000002.1	552869..553738	99.54	870	0						
GCA_032545145.1_PDT001814419.1_genomic.fna	Salmonella_enterica	0.5221	370.237 KB	4	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPXZ010000003.1 Salmonella enterica strain PNUSAS362035 SAMN36387285-rid18769713.denovo.03, whole genome shotgun sequence	252456..252893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPXZ010000021.1 Salmonella enterica strain PNUSAS362035 SAMN36387285-rid18769713.denovo.24, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNPXZ010000021.1 Salmonella enterica strain PNUSAS362035 SAMN36387285-rid18769713.denovo.24, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPXZ010000021.1 Salmonella enterica strain PNUSAS362035 SAMN36387285-rid18769713.denovo.24, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPXZ010000021.1 Salmonella enterica strain PNUSAS362035 SAMN36387285-rid18769713.denovo.24, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPXZ010000021.1 Salmonella enterica strain PNUSAS362035 SAMN36387285-rid18769713.denovo.24, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNPXZ010000034.1 Salmonella enterica strain PNUSAS362035 SAMN36387285-rid18769713.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPXZ010000036.1 Salmonella enterica strain PNUSAS362035 SAMN36387285-rid18769713.guided.25, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNPXZ010000036.1 Salmonella enterica strain PNUSAS362035 SAMN36387285-rid18769713.guided.25, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNPXZ010000036.1 Salmonella enterica strain PNUSAS362035 SAMN36387285-rid18769713.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNPXZ010000036.1 Salmonella enterica strain PNUSAS362035 SAMN36387285-rid18769713.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNPXZ010000036.1 Salmonella enterica strain PNUSAS362035 SAMN36387285-rid18769713.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNPXZ010000022.1 Salmonella enterica strain PNUSAS362035 SAMN36387285-rid18769713.denovo.27, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPXZ010000037.1 Salmonella enterica strain PNUSAS362035 SAMN36387285-rid18769713.guided.26, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPXZ010000002.1	751558..752427	99.655	870	0						
GCA_032545245.1_PDT001814413.1_genomic.fna	Salmonella_enterica	0.5211	139.755 KB	11	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNPYE010000035.1 Salmonella enterica strain PNUSAS361350 SAMN36384432-rid18769673.denovo.36, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNPYE010000074.1 Salmonella enterica strain PNUSAS361350 SAMN36384432-rid18769673.guided.56, whole genome shotgun sequence	2602..3039	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABNPYE010000025.1 Salmonella enterica strain PNUSAS361350 SAMN36384432-rid18769673.denovo.25, whole genome shotgun sequence	68874..69135																																																						avrA	ABNPYE010000002.1	93997..94866	98.966	870	0						
GCA_032545325.1_PDT001814411.1_genomic.fna	Salmonella_enterica	0.5215	341.181 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPYF010000002.1 Salmonella enterica strain PNUSAS362060 SAMN36390863-rid18769113.denovo.02, whole genome shotgun sequence	145192..145629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPYF010000046.1 Salmonella enterica strain PNUSAS362060 SAMN36390863-rid18769113.guided.14, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPYF010000015.1 Salmonella enterica strain PNUSAS362060 SAMN36390863-rid18769113.denovo.16, whole genome shotgun sequence	36049..36691	enterobacteriales	IncFII(S)	100	262 / 262	ABNPYF010000015.1 Salmonella enterica strain PNUSAS362060 SAMN36390863-rid18769113.denovo.16, whole genome shotgun sequence	51777..52038																																																avrA	ABNPYF010000001.1	450786..451655	99.885	870	0						
GCA_032545365.1_PDT001814399.1_genomic.fna	Salmonella_enterica	0.5211	376.212 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPYM010000001.1 Salmonella enterica strain PNUSAS362016 SAMN36387264-rid18769553.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPYM010000029.1 Salmonella enterica strain PNUSAS362016 SAMN36387264-rid18769553.guided.21, whole genome shotgun sequence	15395..15832	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPYM010000020.1 Salmonella enterica strain PNUSAS362016 SAMN36387264-rid18769553.denovo.22, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNPYM010000015.1 Salmonella enterica strain PNUSAS362016 SAMN36387264-rid18769553.denovo.16, whole genome shotgun sequence	4416..4677																																																avrA	ABNPYM010000002.1	553193..554062	99.54	870	0						
GCA_032545405.1_PDT001814405.1_genomic.fna	Salmonella_enterica	0.5223	380.367 KB	4	aroC_13,dnaN_109,hemD_49,hisD_13,purE_12,sucA_13,thrA_4	512	30:b:e,n,x	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440II	aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	30	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Urbana		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNPYK010000001.1 Salmonella enterica strain PNUSAS361878 SAMN36383116-rid18769613.denovo.01, whole genome shotgun sequence	589096..589533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNPYK010000035.1 Salmonella enterica strain PNUSAS361878 SAMN36383116-rid18769613.guided.24, whole genome shotgun sequence	2005..2442	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNPYK010000025.1 Salmonella enterica strain PNUSAS361878 SAMN36383116-rid18769613.denovo.29, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNPYK010000036.1 Salmonella enterica strain PNUSAS361878 SAMN36383116-rid18769613.guided.28, whole genome shotgun sequence	4227..4871	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNPYK010000025.1 Salmonella enterica strain PNUSAS361878 SAMN36383116-rid18769613.denovo.29, whole genome shotgun sequence	1519..1649	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNPYK010000036.1 Salmonella enterica strain PNUSAS361878 SAMN36383116-rid18769613.guided.28, whole genome shotgun sequence	3571..3701		enterobacteriales	Col440II	97.16	282 / 282	ABNPYK010000023.1 Salmonella enterica strain PNUSAS361878 SAMN36383116-rid18769613.denovo.26, whole genome shotgun sequence	5136..5417																																									avrA	ABNPYK010000007.1	39818..40687	99.425	870	0						
GCA_032545425.1_PDT001814401.1_genomic.fna	Salmonella_enterica	0.5202	217.867 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNPYL010000004.1 Salmonella enterica strain PNUSAS361557 SAMN36383613-rid18769573.denovo.04, whole genome shotgun sequence	312911..313348	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNPYL010000044.1 Salmonella enterica strain PNUSAS361557 SAMN36383613-rid18769573.guided.29, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNPYL010000021.1 Salmonella enterica strain PNUSAS361557 SAMN36383613-rid18769573.denovo.21, whole genome shotgun sequence	12899..13541	enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABNPYL010000030.1 Salmonella enterica strain PNUSAS361557 SAMN36383613-rid18769573.denovo.32, whole genome shotgun sequence	18534..19126																																																											
GCA_032545445.1_PDT001814397.1_genomic.fna	Salmonella_enterica	0.5166	72.071 KB	21	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	2	IncHI2,IncHI2A	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPYO010000001.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323280 SAMN36382124-rid18769533.denovo.001, whole genome shotgun sequence	65080..65517	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPYO010000136.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323280 SAMN36382124-rid18769533.guided.043, whole genome shotgun sequence	30248..30685	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNPYO010000007.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323280 SAMN36382124-rid18769533.denovo.007, whole genome shotgun sequence	18001..18423	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNPYO010000138.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323280 SAMN36382124-rid18769533.guided.103, whole genome shotgun sequence	4517..4939	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNPYO010000023.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323280 SAMN36382124-rid18769533.denovo.023, whole genome shotgun sequence	58730..59056	enterobacteriales	IncHI2A	100	630 / 630	ABNPYO010000081.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12323280 SAMN36382124-rid18769533.denovo.083, whole genome shotgun sequence	2794..3423																																																avrA	ABNPYO010000009.1	96168..97037	99.195	870	0						
GCA_032545465.1_PDT001814395.1_genomic.fna	Salmonella_enterica	0.5204	223.988 KB	7	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNPYQ010000004.1 Salmonella enterica strain PNUSAS360873 SAMN36383622-rid18769523.denovo.04, whole genome shotgun sequence	312911..313348	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNPYQ010000042.1 Salmonella enterica strain PNUSAS360873 SAMN36383622-rid18769523.guided.32, whole genome shotgun sequence	11038..11475	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNPYQ010000023.1 Salmonella enterica strain PNUSAS360873 SAMN36383622-rid18769523.denovo.23, whole genome shotgun sequence	12719..13361	enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABNPYQ010000029.1 Salmonella enterica strain PNUSAS360873 SAMN36383622-rid18769523.denovo.29, whole genome shotgun sequence	18534..19126																																																											
GCA_032545485.1_PDT001814396.1_genomic.fna	Salmonella_enterica	0.5212	456.16 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPYP010000005.1 Salmonella enterica strain PNUSAS361943 SAMN36384279-rid18769093.denovo.05, whole genome shotgun sequence	293266..293703	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPYP010000029.1 Salmonella enterica strain PNUSAS361943 SAMN36384279-rid18769093.guided.24, whole genome shotgun sequence	672..1109	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPYP010000015.1 Salmonella enterica strain PNUSAS361943 SAMN36384279-rid18769093.denovo.15, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNPYP010000015.1 Salmonella enterica strain PNUSAS361943 SAMN36384279-rid18769093.denovo.15, whole genome shotgun sequence	53092..53353																																																avrA	ABNPYP010000001.1	585479..586348	99.54	870	0						
GCA_032545505.1_PDT001814394.1_genomic.fna	Salmonella_enterica	0.522	579.485 KB	3	aroC_5,dnaN_37,hemD_250,hisD_4,purE_438,sucA_207,thrA_157	8170	7:z10:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_37	hemD	100	100	hemD_250	hisD	100	100	hisD_4	purE	100	100	purE_438	sucA	100	100	sucA_207	thrA	100	100	thrA_157	7	z10	1,7	Salmonella enterica subspecies enterica (subspecies I)	Ngili		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNPYS010000001.1 Salmonella enterica strain PNUSAS361874 SAMN36383122-rid18769513.denovo.01, whole genome shotgun sequence	813763..814200	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNPYS010000022.1 Salmonella enterica strain PNUSAS361874 SAMN36383122-rid18769513.guided.18, whole genome shotgun sequence	9283..9720	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPYS010000003.1	428111..428980	99.08	870	0						
GCA_032545525.1_PDT001814393.1_genomic.fna	Salmonella_enterica	0.5206	450.776 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPYR010000001.1 Salmonella enterica strain PNUSAS362003 SAMN36388870-rid18769503.denovo.01, whole genome shotgun sequence	414575..415012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPYR010000028.1 Salmonella enterica strain PNUSAS362003 SAMN36388870-rid18769503.guided.14, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032545545.1_PDT001814391.1_genomic.fna	Salmonella_enterica	0.5212	299.541 KB	5	aroC_18,dnaN_14,hemD_12,hisD_9,purE_5,sucA_18,thrA_21	36	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_14	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_18	thrA	100	100	thrA_21	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPYT010000001.1 Salmonella enterica strain PNUSAS360877 SAMN36383631-rid18769083.denovo.01, whole genome shotgun sequence	526946..527383	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPYT010000032.1 Salmonella enterica strain PNUSAS360877 SAMN36383631-rid18769083.guided.25, whole genome shotgun sequence	13314..13751	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNPYT010000002.1	174530..175399	99.885	870	0						
GCA_032545565.1_PDT001814390.1_genomic.fna	Salmonella_enterica	0.5209	695.952 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPYU010000001.1 Salmonella enterica strain PNUSAS362052 SAMN36390917-rid18769483.denovo.01, whole genome shotgun sequence	643436..643873	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPYU010000017.1 Salmonella enterica strain PNUSAS362052 SAMN36390917-rid18769483.guided.10, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032545605.1_PDT001814386.1_genomic.fna	Salmonella_enterica	0.5206	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX4	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPYX010000001.1 Salmonella enterica strain PNUSAS362056 SAMN36390893-rid18769073.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPYX010000027.1 Salmonella enterica strain PNUSAS362056 SAMN36390893-rid18769073.guided.23, whole genome shotgun sequence	522..959	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPYX010000013.1 Salmonella enterica strain PNUSAS362056 SAMN36390893-rid18769073.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNPYX010000013.1 Salmonella enterica strain PNUSAS362056 SAMN36390893-rid18769073.denovo.13, whole genome shotgun sequence	5032..5293		enterobacteriales	IncX4	100	374 / 374	ABNPYX010000015.1 Salmonella enterica strain PNUSAS362056 SAMN36390893-rid18769073.denovo.15, whole genome shotgun sequence	13747..14120																																									avrA	ABNPYX010000002.1	553636..554505	99.54	870	0						
GCA_032545625.1_PDT001814388.1_genomic.fna	Salmonella_enterica	0.5214	421.397 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPYW010000001.1 Salmonella enterica strain PNUSAS361860 SAMN36383127-rid18769463.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPYW010000025.1 Salmonella enterica strain PNUSAS361860 SAMN36383127-rid18769463.guided.18, whole genome shotgun sequence	1654..2091	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPYW010000014.1 Salmonella enterica strain PNUSAS361860 SAMN36383127-rid18769463.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNPYW010000014.1 Salmonella enterica strain PNUSAS361860 SAMN36383127-rid18769463.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNPYW010000002.1	554621..555490	99.54	870	0						
GCA_032545645.1_PDT001814385.1_genomic.fna	Salmonella_enterica	0.52	402.455 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPYY010000001.1 Salmonella enterica strain PNUSAS362068 SAMN36390926-rid18769443.denovo.01, whole genome shotgun sequence	642724..643161	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPYY010000021.1 Salmonella enterica strain PNUSAS362068 SAMN36390926-rid18769443.guided.10, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032545685.1_PDT001814382.1_genomic.fna	Salmonella_enterica	0.5204	238.812 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPZA010000001.1 Salmonella enterica strain PNUSAS360885 SAMN36383503-rid18769413.denovo.01, whole genome shotgun sequence	62180..62617	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPZA010000039.1 Salmonella enterica strain PNUSAS360885 SAMN36383503-rid18769413.denovo.44, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPZA010000039.1 Salmonella enterica strain PNUSAS360885 SAMN36383503-rid18769413.denovo.44, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNPZA010000056.1 Salmonella enterica strain PNUSAS360885 SAMN36383503-rid18769413.guided.39, whole genome shotgun sequence	3420..3857	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNPZA010000057.1 Salmonella enterica strain PNUSAS360885 SAMN36383503-rid18769413.guided.43, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNPZA010000057.1 Salmonella enterica strain PNUSAS360885 SAMN36383503-rid18769413.guided.43, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNPZA010000044.1 Salmonella enterica strain PNUSAS360885 SAMN36383503-rid18769413.denovo.50, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNPZA010000058.1 Salmonella enterica strain PNUSAS360885 SAMN36383503-rid18769413.guided.49, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNPZA010000039.1 Salmonella enterica strain PNUSAS360885 SAMN36383503-rid18769413.denovo.44, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNPZA010000057.1 Salmonella enterica strain PNUSAS360885 SAMN36383503-rid18769413.guided.43, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNPZA010000035.1 Salmonella enterica strain PNUSAS360885 SAMN36383503-rid18769413.denovo.38, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNPZA010000055.1 Salmonella enterica strain PNUSAS360885 SAMN36383503-rid18769413.guided.37, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncI2(Delta)	98.1	316 / 316	ABNPZA010000030.1 Salmonella enterica strain PNUSAS360885 SAMN36383503-rid18769413.denovo.30, whole genome shotgun sequence	7578..7893																																																						avrA	ABNPZA010000002.1	402703..403572	99.885	870	0						
GCA_032545705.1_PDT001814381.1_genomic.fna	Salmonella_enterica	0.5216	335.442 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	4	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPZB010000001.1 Salmonella enterica strain PNUSAS362031 SAMN36387186-rid18769403.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNPZB010000015.1 Salmonella enterica strain PNUSAS362031 SAMN36387186-rid18769403.denovo.15, whole genome shotgun sequence	72246..73148	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNPZB010000015.1 Salmonella enterica strain PNUSAS362031 SAMN36387186-rid18769403.denovo.15, whole genome shotgun sequence	71291..72082	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNPZB010000036.1 Salmonella enterica strain PNUSAS362031 SAMN36387186-rid18769403.guided.23, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNPZB010000037.1 Salmonella enterica strain PNUSAS362031 SAMN36387186-rid18769403.guided.26, whole genome shotgun sequence	3982..4884	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNPZB010000037.1 Salmonella enterica strain PNUSAS362031 SAMN36387186-rid18769403.guided.26, whole genome shotgun sequence	3027..3818	Spectinomycin, Streptomycin	JQ414041	tet(A)	100	1200/1200	ABNPZB010000015.1 Salmonella enterica strain PNUSAS362031 SAMN36387186-rid18769403.denovo.15, whole genome shotgun sequence	79631..80830	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPZB010000038.1 Salmonella enterica strain PNUSAS362031 SAMN36387186-rid18769403.guided.30, whole genome shotgun sequence	989..2188	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNPZB010000029.1 Salmonella enterica strain PNUSAS362031 SAMN36387186-rid18769403.denovo.34, whole genome shotgun sequence	547..675	enterobacteriales	Col440I	93.64	110 / 114	ABNPZB010000028.1 Salmonella enterica strain PNUSAS362031 SAMN36387186-rid18769403.denovo.33, whole genome shotgun sequence	1566..1675		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPZB010000015.1 Salmonella enterica strain PNUSAS362031 SAMN36387186-rid18769403.denovo.15, whole genome shotgun sequence	86193..86334																																									avrA	ABNPZB010000009.1	39350..40219	98.966	870	0						
GCA_032545725.1_PDT001814377.1_genomic.fna	Salmonella_enterica	0.5224	376.532 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPZD010000004.1 Salmonella enterica strain PNUSAS361552 SAMN36383963-rid18769363.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNPZD010000035.1 Salmonella enterica strain PNUSAS361552 SAMN36383963-rid18769363.guided.25, whole genome shotgun sequence	20567..21004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNPZD010000015.1 Salmonella enterica strain PNUSAS361552 SAMN36383963-rid18769363.denovo.15, whole genome shotgun sequence	86305..86947	enterobacteriales	IncFII(S)	100	262 / 262	ABNPZD010000015.1 Salmonella enterica strain PNUSAS361552 SAMN36383963-rid18769363.denovo.15, whole genome shotgun sequence	70959..71220																																																avrA	ABNPZD010000001.1	446742..447610	100	869	0						
GCA_032545745.1_PDT001814374.1_genomic.fna	Salmonella_enterica	0.5213	377.862 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPZF010000002.1 Salmonella enterica strain PNUSAS362054 SAMN36390881-rid18769343.denovo.02, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPZF010000032.1 Salmonella enterica strain PNUSAS362054 SAMN36390881-rid18769343.guided.19, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPZF010000005.1	120799..121668	99.31	870	0						
GCA_032545785.1_PDT001814372.1_genomic.fna	Salmonella_enterica	0.521	405.99 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPZG010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323292 SAMN36382156-rid18769323.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPZG010000027.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323292 SAMN36382156-rid18769323.guided.15, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPZG010000021.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323292 SAMN36382156-rid18769323.denovo.23, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNPZG010000018.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323292 SAMN36382156-rid18769323.denovo.19, whole genome shotgun sequence	5032..5293																																																avrA	ABNPZG010000008.1	175197..176066	99.54	870	0						
GCA_032545805.1_PDT001814371.1_genomic.fna	Salmonella_enterica	0.5216	363.645 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPZH010000001.1 Salmonella enterica strain PNUSAS361883 SAMN36383049-rid18769313.denovo.01, whole genome shotgun sequence	476572..477009	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPZH010000031.1 Salmonella enterica strain PNUSAS361883 SAMN36383049-rid18769313.guided.25, whole genome shotgun sequence	1531..1968	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPZH010000010.1	140147..141015	99.195	870	0						
GCA_032545825.1_PDT001814369.1_genomic.fna	Salmonella_enterica	0.5217	208.452 KB	9	aroC_75,dnaN_14,hemD_21,hisD_12,purE_115,sucA_78,thrA_530	2247	7:d:l,w	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_75	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_530	7	d	l,w	Salmonella enterica subspecies enterica (subspecies I)	Livingstone		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNPZJ010000006.1 Salmonella enterica subsp. enterica serovar Livingstone strain FSIS12323295 SAMN36382297-rid18769293.denovo.06, whole genome shotgun sequence	71360..71797	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNPZJ010000053.1 Salmonella enterica subsp. enterica serovar Livingstone strain FSIS12323295 SAMN36382297-rid18769293.guided.25, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032545845.1_PDT001814375.1_genomic.fna	Salmonella_enterica	0.5201	369.928 KB	5	aroC_18,dnaN_14,hemD_12,hisD_9,purE_5,sucA_18,thrA_21	36	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(pCoo),IncI1-I(Alpha)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_14	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_18	thrA	100	100	thrA_21	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNPZE010000001.1 Salmonella enterica strain PNUSAS361358 SAMN36384447-rid18769353.denovo.01, whole genome shotgun sequence	278659..279096	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNPZE010000036.1 Salmonella enterica strain PNUSAS361358 SAMN36384447-rid18769353.guided.22, whole genome shotgun sequence	15952..16389	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(pCoo)	95.8	262 / 262	ABNPZE010000017.1 Salmonella enterica strain PNUSAS361358 SAMN36384447-rid18769353.denovo.18, whole genome shotgun sequence	10488..10747	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNPZE010000014.1 Salmonella enterica strain PNUSAS361358 SAMN36384447-rid18769353.denovo.14, whole genome shotgun sequence	69998..70139																																																avrA	ABNPZE010000004.1	174530..175399	99.885	870	0						
GCA_032545865.1_PDT001814362.1_genomic.fna	Salmonella_enterica	0.5214	131.469 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPZK010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323282 SAMN36383107-rid18768593.denovo.01, whole genome shotgun sequence	378220..378657	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPZK010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323282 SAMN36383107-rid18768593.denovo.46, whole genome shotgun sequence	22824..23615	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPZK010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323282 SAMN36383107-rid18768593.denovo.46, whole genome shotgun sequence	22824..23615	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNPZK010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323282 SAMN36383107-rid18768593.guided.47, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPZK010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323282 SAMN36383107-rid18768593.guided.47, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNPZK010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323282 SAMN36383107-rid18768593.guided.48, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNPZK010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323282 SAMN36383107-rid18768593.denovo.46, whole genome shotgun sequence	21480..22319	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPZK010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323282 SAMN36383107-rid18768593.guided.47, whole genome shotgun sequence	2393..3232	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPZK010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323282 SAMN36383107-rid18768593.denovo.46, whole genome shotgun sequence	7764..8963	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPZK010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323282 SAMN36383107-rid18768593.guided.47, whole genome shotgun sequence	15749..16948	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPZK010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323282 SAMN36383107-rid18768593.denovo.57, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX1	98.66	374 / 374	ABNPZK010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323282 SAMN36383107-rid18768593.denovo.41, whole genome shotgun sequence	1306..1679																																																avrA	ABNPZK010000013.1	39524..40393	99.655	870	0						
GCA_032545885.1_PDT001814370.1_genomic.fna	Salmonella_enterica	0.5213	455.616 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPZI010000005.1 Salmonella enterica strain PNUSAS361876 SAMN36383113-rid18769303.denovo.05, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPZI010000029.1 Salmonella enterica strain PNUSAS361876 SAMN36383113-rid18769303.guided.21, whole genome shotgun sequence	2956..3393	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPZI010000018.1 Salmonella enterica strain PNUSAS361876 SAMN36383113-rid18769303.denovo.18, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNPZI010000018.1 Salmonella enterica strain PNUSAS361876 SAMN36383113-rid18769303.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABNPZI010000001.1	584926..585795	99.54	870	0						
GCA_032545905.1_PDT001814361.1_genomic.fna	Salmonella_enterica	0.5227	684.717 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pMET)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNPZL010000001.1 Salmonella enterica strain PNUSAS362057 SAMN36390908-rid18768583.denovo.01, whole genome shotgun sequence	995380..995817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNPZL010000023.1 Salmonella enterica strain PNUSAS362057 SAMN36390908-rid18768583.guided.18, whole genome shotgun sequence	2848..3285	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pMET)	98.27	577 / 577	ABNPZL010000015.1 Salmonella enterica strain PNUSAS362057 SAMN36390908-rid18768583.denovo.15, whole genome shotgun sequence	28348..28924																																																						avrA	ABNPZL010000003.1	543741..544610	99.54	870	0						
GCA_032545925.1_PDT001814360.1_genomic.fna	Salmonella_enterica	0.5213	225.595 KB	7	aroC_43,dnaN_41,hemD_16,hisD_85,purE_40,sucA_58,thrA_3	1392	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_3	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNPZM010000001.1 Salmonella enterica strain PNUSAS361870 SAMN36383038-rid18768573.denovo.01, whole genome shotgun sequence	484846..485283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNPZM010000051.1 Salmonella enterica strain PNUSAS361870 SAMN36383038-rid18768573.guided.26, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPZM010000002.1	167529..168398	99.54	870	0						
GCA_032545965.1_PDT001814359.1_genomic.fna	Salmonella_enterica	0.5188	599.688 KB	4	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,qnrB19,qnrB19,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	2	Col(pHAD28),IncFIB(pN55391)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNPZN010000004.1 Salmonella enterica strain PNUSAS361551 SAMN36383960-rid18768563.denovo.04, whole genome shotgun sequence	454086..454523	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPZN010000016.1 Salmonella enterica strain PNUSAS361551 SAMN36383960-rid18768563.denovo.16, whole genome shotgun sequence	1396..2187	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPZN010000016.1 Salmonella enterica strain PNUSAS361551 SAMN36383960-rid18768563.denovo.16, whole genome shotgun sequence	1396..2187	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	99.77	438/438	ABNPZN010000035.1 Salmonella enterica strain PNUSAS361551 SAMN36383960-rid18768563.guided.18, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNPZN010000038.1 Salmonella enterica strain PNUSAS361551 SAMN36383960-rid18768563.guided.27, whole genome shotgun sequence	1437..2228	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNPZN010000038.1 Salmonella enterica strain PNUSAS361551 SAMN36383960-rid18768563.guided.27, whole genome shotgun sequence	1437..2228	Spectinomycin, Streptomycin	JQ414041	qnrB19	100	645/645	ABNPZN010000027.1 Salmonella enterica strain PNUSAS361551 SAMN36383960-rid18768563.denovo.33, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNPZN010000041.1 Salmonella enterica strain PNUSAS361551 SAMN36383960-rid18768563.guided.35, whole genome shotgun sequence	93..737	Ciprofloxacin	EU432277	sul1	100	840/840	ABNPZN010000016.1 Salmonella enterica strain PNUSAS361551 SAMN36383960-rid18768563.denovo.16, whole genome shotgun sequence	2692..3531	Sulfamethoxazole	U12338	sul1	100	840/840	ABNPZN010000038.1 Salmonella enterica strain PNUSAS361551 SAMN36383960-rid18768563.guided.27, whole genome shotgun sequence	2733..3572	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNPZN010000016.1 Salmonella enterica strain PNUSAS361551 SAMN36383960-rid18768563.denovo.16, whole genome shotgun sequence	16048..17247	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNPZN010000037.1 Salmonella enterica strain PNUSAS361551 SAMN36383960-rid18768563.guided.25, whole genome shotgun sequence	7833..9032	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNPZN010000024.1 Salmonella enterica strain PNUSAS361551 SAMN36383960-rid18768563.denovo.29, whole genome shotgun sequence	3121..3594	Trimethoprim	AF393510	dfrA14	100	474/474	ABNPZN010000040.1 Salmonella enterica strain PNUSAS361551 SAMN36383960-rid18768563.guided.32, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNPZN010000027.1 Salmonella enterica strain PNUSAS361551 SAMN36383960-rid18768563.denovo.33, whole genome shotgun sequence	1522..1652	enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNPZN010000019.1 Salmonella enterica strain PNUSAS361551 SAMN36383960-rid18768563.denovo.20, whole genome shotgun sequence	10173..10732																																																avrA	ABNPZN010000003.1	589221..590090	99.425	870	0						
GCA_032546005.1_PDT001814356.1_genomic.fna	Salmonella_enterica	0.5216	466.677 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPZQ010000001.1 Salmonella enterica strain PNUSAS361547 SAMN36383951-rid18768543.denovo.01, whole genome shotgun sequence	674226..674663	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPZQ010000025.1 Salmonella enterica strain PNUSAS361547 SAMN36383951-rid18768543.guided.17, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPZQ010000008.1	150695..151565	99.196	871	0						
GCA_032546085.1_PDT001814351.1_genomic.fna	Salmonella_enterica	0.5221	332.885 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNPZV010000001.1 Salmonella enterica strain PNUSAS361863 SAMN36383130-rid18768503.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNPZV010000039.1 Salmonella enterica strain PNUSAS361863 SAMN36383130-rid18768503.guided.30, whole genome shotgun sequence	3860..4297	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPZV010000002.1	149647..150516	99.655	870	0						
GCA_032546105.1_PDT001814350.1_genomic.fna	Salmonella_enterica	0.5209	489.886 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNPZW010000001.1 Salmonella enterica strain PNUSAS362066 SAMN36390848-rid18768493.denovo.01, whole genome shotgun sequence	500887..501324	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNPZW010000023.1 Salmonella enterica strain PNUSAS362066 SAMN36390848-rid18768493.guided.14, whole genome shotgun sequence	30656..31093	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNPZW010000013.1 Salmonella enterica strain PNUSAS362066 SAMN36390848-rid18768493.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNPZW010000013.1 Salmonella enterica strain PNUSAS362066 SAMN36390848-rid18768493.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNPZW010000002.1	553499..554368	99.54	870	0						
GCA_032546145.1_PDT001814346.1_genomic.fna	Salmonella_enterica	0.5221	564.952 KB	2	aroC_84,dnaN_405,hemD_309,hisD_625,purE_438,sucA_322,thrA_137	2658	16:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_405	hemD	100	100	hemD_309	hisD	100	100	hisD_625	purE	100	100	purE_438	sucA	100	100	sucA_322	thrA	100	100	thrA_137	16	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Nottingham		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNPZX010000001.1 Salmonella enterica strain MWU58 SAMN36386978-rid18768463.denovo.01, whole genome shotgun sequence	493116..493553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNPZX010000034.1 Salmonella enterica strain MWU58 SAMN36386978-rid18768463.guided.15, whole genome shotgun sequence	16428..16865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPZX010000002.1	503139..504008	99.54	870	0						
GCA_032546165.1_PDT001814345.1_genomic.fna	Salmonella_enterica	0.5209	139.214 KB	12	aroC_71,dnaN_65,hemD_67,hisD_75,purE_61,sucA_9,thrA_64	185	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_71	dnaN	100	100	dnaN_65	hemD	100	100	hemD_67	hisD	100	100	hisD_75	purE	100	100	purE_61	sucA	100	100	sucA_9	thrA	100	100	thrA_64	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNPZY010000001.1 Salmonella enterica strain MWU60 SAMN36386979-rid18768453.denovo.01, whole genome shotgun sequence	163281..163718	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNPZY010000081.1 Salmonella enterica strain MWU60 SAMN36386979-rid18768453.guided.50, whole genome shotgun sequence	1259..1696	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPZY010000002.1	39484..40353	99.195	870	0						
GCA_032546185.1_PDT001814328.1_genomic.fna	Salmonella_enterica	0.5101	212.425 KB	9	aroC_33,dnaN_26,hemD_30,hisD_144,purE_21,sucA_87,thrA_264	1262	18:l,v:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_144	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_264	18	l,v	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 18:l,v:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNPZZ010000010.1 Salmonella enterica strain 22-5757 SAMN36386995-rid18768973.denovo.10, whole genome shotgun sequence	86595..87032	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNPZZ010000089.1 Salmonella enterica strain 22-5757 SAMN36386995-rid18768973.guided.25, whole genome shotgun sequence	53865..54302	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNPZZ010000009.1	38504..39373	96.437	870	0						
GCA_032546205.1_PDT001814320.1_genomic.fna	Salmonella_enterica	0.521	109.439 KB	12	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQAA010000031.1 Salmonella enterica strain PNUSAS362059 SAMN36390875-rid18768953.denovo.31, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQAA010000070.1 Salmonella enterica strain PNUSAS362059 SAMN36390875-rid18768953.guided.49, whole genome shotgun sequence	10144..10581	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABNQAA010000037.1 Salmonella enterica strain PNUSAS362059 SAMN36390875-rid18768953.denovo.38, whole genome shotgun sequence	26921..27180																																																																	
GCA_032546225.1_PDT001814319.1_genomic.fna	Salmonella_enterica	0.5213	412.629 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQAB010000001.1 Salmonella enterica strain PNUSAS361781 SAMN36382147-rid18768263.denovo.01, whole genome shotgun sequence	293249..293686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.22	423/438	ABNQAB010000027.1 Salmonella enterica strain PNUSAS361781 SAMN36382147-rid18768263.guided.23, whole genome shotgun sequence	1..423	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQAB010000019.1 Salmonella enterica strain PNUSAS361781 SAMN36382147-rid18768263.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNQAB010000020.1 Salmonella enterica strain PNUSAS361781 SAMN36382147-rid18768263.denovo.20, whole genome shotgun sequence	3404..3665																																																avrA	ABNQAB010000002.1	140715..141584	99.54	870	0						
GCA_032546245.1_PDT001814317.1_genomic.fna	Salmonella_enterica	0.5214	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQAC010000001.1 Salmonella enterica strain PNUSAS361558 SAMN36383616-rid18768253.denovo.01, whole genome shotgun sequence	815096..815533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQAC010000029.1 Salmonella enterica strain PNUSAS361558 SAMN36383616-rid18768253.guided.18, whole genome shotgun sequence	10891..11328	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQAC010000018.1 Salmonella enterica strain PNUSAS361558 SAMN36383616-rid18768253.denovo.20, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNQAC010000019.1 Salmonella enterica strain PNUSAS361558 SAMN36383616-rid18768253.denovo.22, whole genome shotgun sequence	3414..3675																																																avrA	ABNQAC010000002.1	553187..554056	99.54	870	0						
GCA_032546265.1_PDT001814315.1_genomic.fna	Salmonella_enterica	0.521	478.435 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQAE010000001.1 Salmonella enterica strain PNUSAS362063 SAMN36390940-rid18768233.denovo.01, whole genome shotgun sequence	780560..780997	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQAE010000024.1 Salmonella enterica strain PNUSAS362063 SAMN36390940-rid18768233.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQAE010000012.1 Salmonella enterica strain PNUSAS362063 SAMN36390940-rid18768233.denovo.14, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABNQAE010000016.1 Salmonella enterica strain PNUSAS362063 SAMN36390940-rid18768233.denovo.19, whole genome shotgun sequence	3409..3670																																																avrA	ABNQAE010000002.1	553636..554505	99.54	870	0						
GCA_032546305.1_PDT001814312.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQAG010000001.1 Salmonella enterica strain PNUSAS362020 SAMN36387255-rid18768213.denovo.01, whole genome shotgun sequence	774879..775316	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQAG010000030.1 Salmonella enterica strain PNUSAS362020 SAMN36387255-rid18768213.guided.18, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQAG010000020.1 Salmonella enterica strain PNUSAS362020 SAMN36387255-rid18768213.denovo.21, whole genome shotgun sequence	6836..7478	enterobacteriales	IncFII(S)	100	262 / 262	ABNQAG010000022.1 Salmonella enterica strain PNUSAS362020 SAMN36387255-rid18768213.denovo.24, whole genome shotgun sequence	3446..3707																																																avrA	ABNQAG010000002.1	553636..554505	99.54	870	0						
GCA_032546345.1_PDT001814310.1_genomic.fna	Salmonella_enterica	0.5212	366.334 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQAH010000010.1 Salmonella enterica strain PNUSAS362032 SAMN36387189-rid18768923.denovo.10, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQAH010000040.1 Salmonella enterica strain PNUSAS362032 SAMN36387189-rid18768923.guided.25, whole genome shotgun sequence	34257..34694	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNQAH010000021.1 Salmonella enterica strain PNUSAS362032 SAMN36387189-rid18768923.denovo.21, whole genome shotgun sequence	34957..35490																																																						avrA	ABNQAH010000004.1	39468..40334	98.966	870	0						
GCA_032546425.1_PDT001814304.1_genomic.fna	Salmonella_enterica	0.5212	304.369 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQAL010000003.1 Salmonella enterica strain PNUSAS361941 SAMN36384275-rid18768153.denovo.03, whole genome shotgun sequence	293266..293703	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQAL010000029.1 Salmonella enterica strain PNUSAS361941 SAMN36384275-rid18768153.guided.28, whole genome shotgun sequence	772..1209	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQAL010000018.1 Salmonella enterica strain PNUSAS361941 SAMN36384275-rid18768153.denovo.18, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABNQAL010000020.1 Salmonella enterica strain PNUSAS361941 SAMN36384275-rid18768153.denovo.20, whole genome shotgun sequence	3373..3634																																																avrA	ABNQAL010000001.1	585332..586201	99.54	870	0						
GCA_032546505.1_PDT001814300.1_genomic.fna	Salmonella_enterica	0.5214	360.953 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQAP010000001.1 Salmonella enterica strain PNUSAS361945 SAMN36384281-rid18768893.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQAP010000029.1 Salmonella enterica strain PNUSAS361945 SAMN36384281-rid18768893.guided.23, whole genome shotgun sequence	165..602	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQAP010000016.1 Salmonella enterica strain PNUSAS361945 SAMN36384281-rid18768893.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNQAP010000016.1 Salmonella enterica strain PNUSAS361945 SAMN36384281-rid18768893.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNQAP010000004.1	174998..175867	99.54	870	0						
GCA_032546525.1_PDT001814299.1_genomic.fna	Salmonella_enterica	0.5211	489.741 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQAQ010000001.1 Salmonella enterica strain PNUSAS361351 SAMN36384431-rid18768123.denovo.01, whole genome shotgun sequence	821204..821641	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQAQ010000020.1 Salmonella enterica strain PNUSAS361351 SAMN36384431-rid18768123.guided.14, whole genome shotgun sequence	34801..35238	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQAQ010000011.1 Salmonella enterica strain PNUSAS361351 SAMN36384431-rid18768123.denovo.12, whole genome shotgun sequence	18163..18805	enterobacteriales	IncFII(S)	100	262 / 262	ABNQAQ010000011.1 Salmonella enterica strain PNUSAS361351 SAMN36384431-rid18768123.denovo.12, whole genome shotgun sequence	3425..3686																																																avrA	ABNQAQ010000002.1	553181..554050	99.54	870	0						
GCA_032546545.1_PDT001814298.1_genomic.fna	Salmonella_enterica	0.5201	707.338 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQAR010000001.1 Salmonella enterica strain PNUSAS361347 SAMN36384429-rid18768883.denovo.01, whole genome shotgun sequence	643438..643875	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQAR010000012.1 Salmonella enterica strain PNUSAS361347 SAMN36384429-rid18768883.guided.08, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032546565.1_PDT001814296.1_genomic.fna	Salmonella_enterica	0.5211	363.494 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQAT010000003.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.denovo.03, whole genome shotgun sequence	157648..158085	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQAT010000021.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.denovo.22, whole genome shotgun sequence	29601..30437	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNQAT010000021.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.denovo.22, whole genome shotgun sequence	28799..29601	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNQAT010000044.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQAT010000045.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.guided.27, whole genome shotgun sequence	4833..5669	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNQAT010000045.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.guided.27, whole genome shotgun sequence	4031..4833	Streptomycin	AF321551	blaTEM-214	100	824/861	ABNQAT010000026.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.denovo.30, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNQAT010000026.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.denovo.30, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNQAT010000026.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.denovo.30, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNQAT010000029.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.denovo.34, whole genome shotgun sequence	425..1570	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNQAT010000047.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.guided.35, whole genome shotgun sequence	464..1609	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNQAT010000048.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.guided.37, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNQAT010000048.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.guided.37, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNQAT010000048.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.guided.37, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNQAT010000027.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.denovo.32, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNQAT010000046.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNQAT010000021.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.denovo.22, whole genome shotgun sequence	27923..28738	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNQAT010000045.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.guided.27, whole genome shotgun sequence	3155..3970	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNQAT010000021.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.denovo.22, whole genome shotgun sequence	31698..32972	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNQAT010000045.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.guided.27, whole genome shotgun sequence	6930..8204	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																												gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNQAT010000018.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.denovo.18, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNQAT010000017.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.denovo.17, whole genome shotgun sequence	16913..17172		enterobacteriales	IncX1	98.66	374 / 374	ABNQAT010000017.1 Salmonella enterica strain PNUSAS362004 SAMN36388865-rid18768103.denovo.17, whole genome shotgun sequence	52767..53140																																									avrA	ABNQAT010000007.1	173549..174417	99.54	870	0						
GCA_032546585.1_PDT001814297.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQAS010000001.1 Salmonella enterica strain PNUSAS361949 SAMN36384272-rid18768113.denovo.01, whole genome shotgun sequence	293278..293715	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQAS010000013.1 Salmonella enterica strain PNUSAS361949 SAMN36384272-rid18768113.denovo.13, whole genome shotgun sequence	40545..41187	enterobacteriales	IncFII(S)	100	262 / 262	ABNQAS010000017.1 Salmonella enterica strain PNUSAS361949 SAMN36384272-rid18768113.denovo.17, whole genome shotgun sequence	3402..3663																																																avrA	ABNQAS010000002.1	553642..554511	99.54	870	0						
GCA_032546705.1_PDT001814289.1_genomic.fna	Salmonella_enterica	0.5207	478.789 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQAY010000001.1 Salmonella enterica strain PNUSAS361841 SAMN36384450-rid18768063.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQAY010000024.1 Salmonella enterica strain PNUSAS361841 SAMN36384450-rid18768063.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQAY010000013.1 Salmonella enterica strain PNUSAS361841 SAMN36384450-rid18768063.denovo.15, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNQAY010000017.1 Salmonella enterica strain PNUSAS361841 SAMN36384450-rid18768063.denovo.20, whole genome shotgun sequence	3446..3707																																																avrA	ABNQAY010000002.1	585348..586217	99.54	870	0						
GCA_032546725.1_PDT001814290.1_genomic.fna	Salmonella_enterica	0.5208	521.67 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQAX010000001.1 Salmonella enterica strain PNUSAS362001 SAMN36388862-rid18768853.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNQAX010000024.1 Salmonella enterica strain PNUSAS362001 SAMN36388862-rid18768853.denovo.28, whole genome shotgun sequence	94..924	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABNQAX010000024.1 Salmonella enterica strain PNUSAS362001 SAMN36388862-rid18768853.denovo.28, whole genome shotgun sequence	930..1733	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNQAX010000034.1 Salmonella enterica strain PNUSAS362001 SAMN36388862-rid18768853.guided.23, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNQAX010000038.1 Salmonella enterica strain PNUSAS362001 SAMN36388862-rid18768853.guided.32, whole genome shotgun sequence	842..1672	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABNQAX010000038.1 Salmonella enterica strain PNUSAS362001 SAMN36388862-rid18768853.guided.32, whole genome shotgun sequence	33..836	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNQAX010000023.1 Salmonella enterica strain PNUSAS362001 SAMN36388862-rid18768853.denovo.27, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNQAX010000035.1 Salmonella enterica strain PNUSAS362001 SAMN36388862-rid18768853.guided.26, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNQAX010000019.1 Salmonella enterica strain PNUSAS362001 SAMN36388862-rid18768853.denovo.20, whole genome shotgun sequence	28..843	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNQAX010000036.1 Salmonella enterica strain PNUSAS362001 SAMN36388862-rid18768853.guided.30, whole genome shotgun sequence	2676..3491	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNQAX010000024.1 Salmonella enterica strain PNUSAS362001 SAMN36388862-rid18768853.denovo.28, whole genome shotgun sequence	2693..3892	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQAX010000037.1 Salmonella enterica strain PNUSAS362001 SAMN36388862-rid18768853.guided.31, whole genome shotgun sequence	988..2187	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQAX010000020.1 Salmonella enterica strain PNUSAS362001 SAMN36388862-rid18768853.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNQAX010000021.1 Salmonella enterica strain PNUSAS362001 SAMN36388862-rid18768853.denovo.24, whole genome shotgun sequence	3393..3654		enterobacteriales	IncX1	95.76	377 / 377	ABNQAX010000019.1 Salmonella enterica strain PNUSAS362001 SAMN36388862-rid18768853.denovo.20, whole genome shotgun sequence	11132..11508																																									avrA	ABNQAX010000002.1	552782..553651	99.54	870	0						
GCA_032546745.1_PDT001814295.1_genomic.fna	Salmonella_enterica	0.5209	263.229 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQAU010000001.1 Salmonella enterica strain PNUSAS362034 SAMN36387279-rid18768093.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQAU010000059.1 Salmonella enterica strain PNUSAS362034 SAMN36387279-rid18768093.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNQAU010000003.1	174499..175367	100	869	0						
GCA_032546765.1_PDT001814294.1_genomic.fna	Salmonella_enterica	0.52	373.38 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQAV010000001.1 Salmonella enterica strain PNUSAS362018 SAMN36386824-rid18768083.denovo.01, whole genome shotgun sequence	561488..561925	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQAV010000036.1 Salmonella enterica strain PNUSAS362018 SAMN36386824-rid18768083.guided.23, whole genome shotgun sequence	9850..10287	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQAV010000011.1	171493..172361	99.195	870	0						
GCA_032546885.1_PDT001814285.1_genomic.fna	Salmonella_enterica	0.5205	234.496 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNQBB010000001.1 Salmonella enterica strain PNUSAS362037 SAMN36387201-rid18768043.denovo.01, whole genome shotgun sequence	501154..501591	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNQBB010000032.1 Salmonella enterica strain PNUSAS362037 SAMN36387201-rid18768043.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQBB010000008.1	160500..161368	99.425	870	0						
GCA_032546945.1_PDT001814288.1_genomic.fna	Salmonella_enterica	0.5207	270.905 KB	5	aroC_13,dnaN_109,hemD_49,hisD_13,purE_220,sucA_13,thrA_4	754	30:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_220	sucA	100	100	sucA_13	thrA	100	100	thrA_4	30	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Urbana		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNQBA010000001.1 Salmonella enterica strain PNUSAS362005 SAMN36388851-rid18768843.denovo.01, whole genome shotgun sequence	456618..457055	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNQBA010000070.1 Salmonella enterica strain PNUSAS362005 SAMN36388851-rid18768843.guided.32, whole genome shotgun sequence	8082..8519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQBA010000003.1	95271..96140	99.425	870	0						
GCA_032547105.1_PDT001814284.1_genomic.fna	Salmonella_enterica	0.5201	495.964 KB	3	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQBD010000001.1 Salmonella enterica strain PNUSAS362012 SAMN36387270-rid18768033.denovo.01, whole genome shotgun sequence	830214..830651	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQBD010000022.1 Salmonella enterica strain PNUSAS362012 SAMN36387270-rid18768033.guided.19, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNQBD010000019.1 Salmonella enterica strain PNUSAS362012 SAMN36387270-rid18768033.denovo.22, whole genome shotgun sequence	1905..2035																																																						avrA	ABNQBD010000003.1	162860..163729	98.966	870	0						
GCA_032547125.1_PDT001814280.1_genomic.fna	Salmonella_enterica	0.5212	478.612 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQBF010000001.1 Salmonella enterica strain PNUSAS361950 SAMN36384287-rid18768013.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQBF010000025.1 Salmonella enterica strain PNUSAS361950 SAMN36384287-rid18768013.guided.23, whole genome shotgun sequence	791..1228	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQBF010000012.1 Salmonella enterica strain PNUSAS361950 SAMN36384287-rid18768013.denovo.12, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABNQBF010000016.1 Salmonella enterica strain PNUSAS361950 SAMN36384287-rid18768013.denovo.16, whole genome shotgun sequence	3388..3649																																																avrA	ABNQBF010000002.1	585479..586348	99.54	870	0						
GCA_032547145.1_PDT001814281.1_genomic.fna	Salmonella_enterica	0.5215	719.072 KB	2	aroC_50,dnaN_63,hemD_25,hisD_72,purE_59,sucA_292,thrA_63	1515	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_63	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_59	sucA	100	100	sucA_292	thrA	100	100	thrA_63	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNQBG010000001.1 Salmonella enterica strain PNUSAS361349 SAMN36384437-rid18768813.denovo.01, whole genome shotgun sequence	644190..644627	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNQBG010000013.1 Salmonella enterica strain PNUSAS361349 SAMN36384437-rid18768813.guided.08, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQBG010000003.1	553456..554325	99.425	870	0						
GCA_032547345.1_PDT001814274.1_genomic.fna	Salmonella_enterica	0.5142	170.366 KB	7	aroC_65,dnaN_25,hemD_28,hisD_24,purE_237,sucA_26,thrA_340	10350	40:z4,z23:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_65	dnaN	100	100	dnaN_25	hemD	100	100	hemD_28	hisD	100	100	hisD_24	purE	100	100	purE_237	sucA	100	100	sucA_26	thrA	100	100	thrA_340	40	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 40:z4,z23:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032547485.1_PDT001814270.1_genomic.fna	Salmonella_enterica	0.5209	489.739 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQBQ010000001.1 Salmonella enterica strain PNUSAS361671 SAMN36385441-rid18767953.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQBQ010000030.1 Salmonella enterica strain PNUSAS361671 SAMN36385441-rid18767953.guided.14, whole genome shotgun sequence	34051..34488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQBQ010000016.1 Salmonella enterica strain PNUSAS361671 SAMN36385441-rid18767953.denovo.18, whole genome shotgun sequence	40502..41144	enterobacteriales	IncFII(S)	100	262 / 262	ABNQBQ010000020.1 Salmonella enterica strain PNUSAS361671 SAMN36385441-rid18767953.denovo.23, whole genome shotgun sequence	3413..3674																																																avrA	ABNQBQ010000002.1	552782..553651	99.54	870	0						
GCA_032547565.1_PDT001814269.1_genomic.fna	Salmonella_enterica	0.5199	389.813 KB	5	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	5	aac(6')-Iaa,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(3'')-Ib,aph(3')-Ia,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	2	Col440I,IncQ1,IncQ1	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQBR010000001.1 Salmonella enterica strain PNUSAS361846 SAMN36384449-rid18767943.denovo.01, whole genome shotgun sequence	110416..110853	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	671/804	ABNQBR010000023.1 Salmonella enterica strain PNUSAS361846 SAMN36384449-rid18767943.denovo.27, whole genome shotgun sequence	8803..9473	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNQBR010000025.1 Salmonella enterica strain PNUSAS361846 SAMN36384449-rid18767943.denovo.30, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EU722351	aac(6')-Iaa	97.95	438/438	ABNQBR010000036.1 Salmonella enterica strain PNUSAS361846 SAMN36384449-rid18767943.guided.13, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	695/804	ABNQBR010000039.1 Salmonella enterica strain PNUSAS361846 SAMN36384449-rid18767943.guided.26, whole genome shotgun sequence	7879..8573	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNQBR010000040.1 Salmonella enterica strain PNUSAS361846 SAMN36384449-rid18767943.guided.29, whole genome shotgun sequence	1..816	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EU722351	sul2	100	816/816	ABNQBR010000023.1 Salmonella enterica strain PNUSAS361846 SAMN36384449-rid18767943.denovo.27, whole genome shotgun sequence	85..900	Sulfamethoxazole	FN995456	sul2	100	816/816	ABNQBR010000039.1 Salmonella enterica strain PNUSAS361846 SAMN36384449-rid18767943.guided.26, whole genome shotgun sequence	7003..7818	Sulfamethoxazole	FN995456	tet(A)	100	1200/1200	ABNQBR010000023.1 Salmonella enterica strain PNUSAS361846 SAMN36384449-rid18767943.denovo.27, whole genome shotgun sequence	6703..7902	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQBR010000039.1 Salmonella enterica strain PNUSAS361846 SAMN36384449-rid18767943.guided.26, whole genome shotgun sequence	1..1200	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNQBR010000026.1 Salmonella enterica strain PNUSAS361846 SAMN36384449-rid18767943.denovo.31, whole genome shotgun sequence	3175..3285	enterobacteriales	IncQ1	100	796 / 796	ABNQBR010000023.1 Salmonella enterica strain PNUSAS361846 SAMN36384449-rid18767943.denovo.27, whole genome shotgun sequence	2240..3035		enterobacteriales	IncQ1	100	796 / 796	ABNQBR010000039.1 Salmonella enterica strain PNUSAS361846 SAMN36384449-rid18767943.guided.26, whole genome shotgun sequence	4868..5663																																									avrA	ABNQBR010000003.1	162698..163567	98.966	870	0						
GCA_032547605.1_PDT001814271.1_genomic.fna	Salmonella_enterica	0.5221	363.129 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	4	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQBP010000001.1 Salmonella enterica strain PNUSAS362030 SAMN36387300-rid18768773.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNQBP010000014.1 Salmonella enterica strain PNUSAS362030 SAMN36387300-rid18768773.denovo.14, whole genome shotgun sequence	72246..73148	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNQBP010000014.1 Salmonella enterica strain PNUSAS362030 SAMN36387300-rid18768773.denovo.14, whole genome shotgun sequence	71291..72082	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNQBP010000037.1 Salmonella enterica strain PNUSAS362030 SAMN36387300-rid18768773.guided.21, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNQBP010000039.1 Salmonella enterica strain PNUSAS362030 SAMN36387300-rid18768773.guided.26, whole genome shotgun sequence	3982..4884	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNQBP010000039.1 Salmonella enterica strain PNUSAS362030 SAMN36387300-rid18768773.guided.26, whole genome shotgun sequence	3027..3818	Spectinomycin, Streptomycin	JQ414041	tet(A)	100	1200/1200	ABNQBP010000014.1 Salmonella enterica strain PNUSAS362030 SAMN36387300-rid18768773.denovo.14, whole genome shotgun sequence	79631..80830	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQBP010000040.1 Salmonella enterica strain PNUSAS362030 SAMN36387300-rid18768773.guided.29, whole genome shotgun sequence	2040..3239	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNQBP010000029.1 Salmonella enterica strain PNUSAS362030 SAMN36387300-rid18768773.denovo.34, whole genome shotgun sequence	547..675	enterobacteriales	Col440I	93.64	110 / 114	ABNQBP010000028.1 Salmonella enterica strain PNUSAS362030 SAMN36387300-rid18768773.denovo.33, whole genome shotgun sequence	1566..1675		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNQBP010000014.1 Salmonella enterica strain PNUSAS362030 SAMN36387300-rid18768773.denovo.14, whole genome shotgun sequence	86193..86334																																									avrA	ABNQBP010000009.1	39350..40219	98.966	870	0						
GCA_032547625.1_PDT001814265.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQBU010000001.1 Salmonella enterica strain PNUSAS361359 SAMN36384434-rid18767923.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQBU010000020.1 Salmonella enterica strain PNUSAS361359 SAMN36384434-rid18767923.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQBU010000012.1 Salmonella enterica strain PNUSAS361359 SAMN36384434-rid18767923.denovo.13, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNQBU010000012.1 Salmonella enterica strain PNUSAS361359 SAMN36384434-rid18767923.denovo.13, whole genome shotgun sequence	53092..53353																																																avrA	ABNQBU010000002.1	553636..554505	99.54	870	0						
GCA_032547645.1_PDT001814267.1_genomic.fna	Salmonella_enterica	0.5215	707.807 KB	2	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQBS010000001.1 Salmonella enterica strain PNUSAS361845 SAMN36384267-rid18767933.denovo.01, whole genome shotgun sequence	624559..624996	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQBS010000018.1 Salmonella enterica strain PNUSAS361845 SAMN36384267-rid18767933.guided.11, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032547705.1_PDT001814266.1_genomic.fna	Salmonella_enterica	0.5223	399.194 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQBT010000001.1 Salmonella enterica strain PNUSAS361353 SAMN36384425-rid18768753.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQBT010000025.1 Salmonella enterica strain PNUSAS361353 SAMN36384425-rid18768753.guided.11, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQBT010000003.1	150300..151169	99.655	870	0						
GCA_032547825.1_PDT001814260.1_genomic.fna	Salmonella_enterica	0.5208	489.844 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQBY010000001.1 Salmonella enterica strain PNUSAS361354 SAMN36384404-rid18767893.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQBY010000021.1 Salmonella enterica strain PNUSAS361354 SAMN36384404-rid18767893.guided.10, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQBY010000011.1 Salmonella enterica strain PNUSAS361354 SAMN36384404-rid18767893.denovo.13, whole genome shotgun sequence	18163..18805	enterobacteriales	IncFII(S)	100	262 / 262	ABNQBY010000011.1 Salmonella enterica strain PNUSAS361354 SAMN36384404-rid18767893.denovo.13, whole genome shotgun sequence	3425..3686																																																avrA	ABNQBY010000002.1	553187..554056	99.54	870	0						
GCA_032548685.1_PDT001814256.1_genomic.fna	Salmonella_enterica	0.5217	217.804 KB	7	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	5	aac(6')-Iaa,aac(6')-Iaa,tmexD3,TOprJ3,tmexC3,tet(M),tmexD3,TOprJ3,tmexC3,tet(M)	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQCC010000003.1 Salmonella enterica strain PNUSAS361840 SAMN36385325-rid18768723.denovo.03, whole genome shotgun sequence	38416..38853	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQCC010000037.1 Salmonella enterica strain PNUSAS361840 SAMN36385325-rid18768723.guided.25, whole genome shotgun sequence	5428..5865	Amikacin, Tobramycin	NC_003197	tmexD3	100	3135/3135	ABNQCC010000007.1 Salmonella enterica strain PNUSAS361840 SAMN36385325-rid18768723.denovo.07, whole genome shotgun sequence	1367..4501	Doxycycline, Tetracycline, Minocycline, Tigecycline	LC633285	TOprJ3	100	1434/1434	ABNQCC010000007.1 Salmonella enterica strain PNUSAS361840 SAMN36385325-rid18768723.denovo.07, whole genome shotgun sequence	4506..5939	Doxycycline, Tetracycline, Minocycline, Tigecycline	LC633285	tmexC3	99.91	1164/1164	ABNQCC010000007.1 Salmonella enterica strain PNUSAS361840 SAMN36385325-rid18768723.denovo.07, whole genome shotgun sequence	188..1351	Doxycycline, Tetracycline, Minocycline, Tigecycline	LC633285	tet(M)	96.15	1920/1920	ABNQCC010000029.1 Salmonella enterica strain PNUSAS361840 SAMN36385325-rid18768723.denovo.34, whole genome shotgun sequence	844..2763	Doxycycline, Tetracycline, Minocycline	X04388	tmexD3	100	3135/3135	ABNQCC010000038.1 Salmonella enterica strain PNUSAS361840 SAMN36385325-rid18768723.guided.29, whole genome shotgun sequence	1408..4542	Doxycycline, Tetracycline, Minocycline, Tigecycline	LC633285	TOprJ3	100	1434/1434	ABNQCC010000038.1 Salmonella enterica strain PNUSAS361840 SAMN36385325-rid18768723.guided.29, whole genome shotgun sequence	4547..5980	Doxycycline, Tetracycline, Minocycline, Tigecycline	LC633285	tmexC3	99.91	1164/1164	ABNQCC010000038.1 Salmonella enterica strain PNUSAS361840 SAMN36385325-rid18768723.guided.29, whole genome shotgun sequence	229..1392	Doxycycline, Tetracycline, Minocycline, Tigecycline	LC633285	tet(M)	96.15	1920/1920	ABNQCC010000040.1 Salmonella enterica strain PNUSAS361840 SAMN36385325-rid18768723.guided.33, whole genome shotgun sequence	885..2804	Doxycycline, Tetracycline, Minocycline	X04388																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																						avrA	ABNQCC010000001.1	190889..191758	99.54	870	0						
GCA_032548705.1_PDT001814259.1_genomic.fna	Salmonella_enterica	0.5222	749.816 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNQBZ010000001.1 Salmonella enterica strain PNUSAS361356 SAMN36384406-rid18767883.denovo.01, whole genome shotgun sequence	633844..634281	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNQBZ010000020.1 Salmonella enterica strain PNUSAS361356 SAMN36384406-rid18767883.guided.15, whole genome shotgun sequence	6877..7314	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQBZ010000003.1	563798..564667	99.77	870	0						
GCA_032548755.1_PDT001814254.1_genomic.fna	Salmonella_enterica	0.5204	478.715 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQCE010000001.1 Salmonella enterica strain PNUSAS361352 SAMN36384422-rid18767843.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQCE010000022.1 Salmonella enterica strain PNUSAS361352 SAMN36384422-rid18767843.guided.16, whole genome shotgun sequence	2915..3352	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNQCE010000012.1 Salmonella enterica strain PNUSAS361352 SAMN36384422-rid18767843.denovo.13, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNQCE010000012.1 Salmonella enterica strain PNUSAS361352 SAMN36384422-rid18767843.denovo.13, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNQCE010000014.1 Salmonella enterica strain PNUSAS361352 SAMN36384422-rid18767843.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNQCE010000002.1	553486..554355	99.54	870	0						
GCA_032548785.1_PDT001814257.1_genomic.fna	Salmonella_enterica	0.5195	137.261 KB	11	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(B),tet(B)	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQCB010000027.1 Salmonella enterica strain PNUSAS361361 SAMN36384427-rid18767863.denovo.27, whole genome shotgun sequence	12011..12448	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQCB010000067.1 Salmonella enterica strain PNUSAS361361 SAMN36384427-rid18767863.guided.38, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNQCB010000057.1 Salmonella enterica strain PNUSAS361361 SAMN36384427-rid18767863.denovo.62, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNQCB010000071.1 Salmonella enterica strain PNUSAS361361 SAMN36384427-rid18767863.guided.61, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	tet(B)	100	1206/1206	ABNQCB010000050.1 Salmonella enterica strain PNUSAS361361 SAMN36384427-rid18767863.denovo.53, whole genome shotgun sequence	2525..3730	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNQCB010000070.1 Salmonella enterica strain PNUSAS361361 SAMN36384427-rid18767863.guided.54, whole genome shotgun sequence	2566..3771	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNQCB010000057.1 Salmonella enterica strain PNUSAS361361 SAMN36384427-rid18767863.denovo.62, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNQCB010000071.1 Salmonella enterica strain PNUSAS361361 SAMN36384427-rid18767863.guided.61, whole genome shotgun sequence	2044..2174																																																avrA	ABNQCB010000015.1	81933..82802	98.966	870	0						
GCA_032548905.1_PDT001814252.1_genomic.fna	Salmonella_enterica	0.5206	210.633 KB	7	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNQCG010000005.1 Salmonella enterica strain PNUSAS362033 SAMN36387293-rid18767823.denovo.05, whole genome shotgun sequence	79916..80353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNQCG010000042.1 Salmonella enterica strain PNUSAS362033 SAMN36387293-rid18767823.guided.23, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQCG010000002.1	144854..145723	99.31	870	0						
GCA_032549085.1_PDT001814249.1_genomic.fna	Salmonella_enterica	0.5209	347.446 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQCJ010000003.1 Salmonella enterica strain PNUSAS361843 SAMN36385322-rid18767803.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQCJ010000037.1 Salmonella enterica strain PNUSAS361843 SAMN36385322-rid18767803.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNQCJ010000016.1 Salmonella enterica strain PNUSAS361843 SAMN36385322-rid18767803.denovo.17, whole genome shotgun sequence	44772..45414	enterobacteriales	IncFII(S)	100	262 / 262	ABNQCJ010000016.1 Salmonella enterica strain PNUSAS361843 SAMN36385322-rid18767803.denovo.17, whole genome shotgun sequence	29426..29687																																																avrA	ABNQCJ010000005.1	175018..175886	100	869	0						
GCA_032549185.1_PDT001814245.1_genomic.fna	Salmonella_enterica	0.5199	174.487 KB	10	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_150,thrA_22	464	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_150	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNQCM010000003.1 Salmonella enterica strain PNUSAS361672 SAMN36385444-rid18768693.denovo.03, whole genome shotgun sequence	256065..256502	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNQCM010000059.1 Salmonella enterica strain PNUSAS361672 SAMN36385444-rid18768693.guided.24, whole genome shotgun sequence	44304..44741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNQCM010000034.1 Salmonella enterica strain PNUSAS361672 SAMN36385444-rid18768693.denovo.36, whole genome shotgun sequence	6141..6783																																																																	
GCA_032549215.1_PDT001814243.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQCO010000001.1 Salmonella enterica strain PNUSAS361362 SAMN36384415-rid18768683.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQCO010000021.1 Salmonella enterica strain PNUSAS361362 SAMN36384415-rid18768683.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQCO010000012.1 Salmonella enterica strain PNUSAS361362 SAMN36384415-rid18768683.denovo.14, whole genome shotgun sequence	40559..41201	enterobacteriales	IncFII(S)	100	262 / 262	ABNQCO010000014.1 Salmonella enterica strain PNUSAS361362 SAMN36384415-rid18768683.denovo.17, whole genome shotgun sequence	3402..3663																																																avrA	ABNQCO010000002.1	553636..554505	99.54	870	0						
GCA_032549245.1_PDT001814244.1_genomic.fna	Salmonella_enterica	0.5226	417.948 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQCN010000001.1 Salmonella enterica strain PNUSAS361348 SAMN36384409-rid18767773.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQCN010000029.1 Salmonella enterica strain PNUSAS361348 SAMN36384409-rid18767773.guided.11, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQCN010000003.1	149913..150782	99.655	870	0						
GCA_032549465.1_PDT001814236.1_genomic.fna	Salmonella_enterica	0.5195	368.134 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	5	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,floR,floR,qnrS1,qnrS1,tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQCV010000001.1 Salmonella enterica strain PNUSAS361357 SAMN36384412-rid18768663.denovo.01, whole genome shotgun sequence	486107..486544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQCV010000039.1 Salmonella enterica strain PNUSAS361357 SAMN36384412-rid18768663.guided.12, whole genome shotgun sequence	34007..34444	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNQCV010000006.1 Salmonella enterica strain PNUSAS361357 SAMN36384412-rid18768663.denovo.06, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNQCV010000041.1 Salmonella enterica strain PNUSAS361357 SAMN36384412-rid18768663.guided.27, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014	floR	98.19	1214/1215	ABNQCV010000026.1 Salmonella enterica strain PNUSAS361357 SAMN36384412-rid18768663.denovo.30, whole genome shotgun sequence	8664..9877	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNQCV010000044.1 Salmonella enterica strain PNUSAS361357 SAMN36384412-rid18768663.guided.33, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNQCV010000026.1 Salmonella enterica strain PNUSAS361357 SAMN36384412-rid18768663.denovo.30, whole genome shotgun sequence	1026..1682	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNQCV010000043.1 Salmonella enterica strain PNUSAS361357 SAMN36384412-rid18768663.guided.32, whole genome shotgun sequence	1067..1723	Ciprofloxacin	AB187515	tet(A)	100	1275/1275	ABNQCV010000026.1 Salmonella enterica strain PNUSAS361357 SAMN36384412-rid18768663.denovo.30, whole genome shotgun sequence	6789..8063	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNQCV010000043.1 Salmonella enterica strain PNUSAS361357 SAMN36384412-rid18768663.guided.32, whole genome shotgun sequence	6830..8104	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNQCV010000025.1 Salmonella enterica strain PNUSAS361357 SAMN36384412-rid18768663.denovo.28, whole genome shotgun sequence	8703..8953																																																						avrA	ABNQCV010000002.1	151209..152078	99.195	870	0						
GCA_032549515.1_PDT001814235.1_genomic.fna	Salmonella_enterica	0.5209	268.353 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQCX010000001.1 Salmonella enterica strain PNUSAS362009 SAMN36387245-rid18768653.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQCX010000051.1 Salmonella enterica strain PNUSAS362009 SAMN36387245-rid18768653.guided.26, whole genome shotgun sequence	36785..37222	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNQCX010000023.1 Salmonella enterica strain PNUSAS362009 SAMN36387245-rid18768653.denovo.23, whole genome shotgun sequence	44721..45363	enterobacteriales	IncFII(S)	100	262 / 262	ABNQCX010000023.1 Salmonella enterica strain PNUSAS362009 SAMN36387245-rid18768653.denovo.23, whole genome shotgun sequence	29375..29636																																																avrA	ABNQCX010000008.1	94139..95007	100	869	0						
GCA_032549585.1_PDT001814232.1_genomic.fna	Salmonella_enterica	0.5217	271.461 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQCW010000004.1 Salmonella enterica strain PNUSAS362036 SAMN36387281-rid18767703.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQCW010000048.1 Salmonella enterica strain PNUSAS362036 SAMN36387281-rid18767703.guided.30, whole genome shotgun sequence	9755..10192	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNQCW010000013.1 Salmonella enterica strain PNUSAS362036 SAMN36387281-rid18767703.denovo.13, whole genome shotgun sequence	73578..74777	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQCW010000051.1 Salmonella enterica strain PNUSAS362036 SAMN36387281-rid18767703.guided.38, whole genome shotgun sequence	2878..4077	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	100	643 / 643	ABNQCW010000024.1 Salmonella enterica strain PNUSAS362036 SAMN36387281-rid18767703.denovo.24, whole genome shotgun sequence	44724..45366	enterobacteriales	IncFII(S)	100	262 / 262	ABNQCW010000024.1 Salmonella enterica strain PNUSAS362036 SAMN36387281-rid18767703.denovo.24, whole genome shotgun sequence	29378..29639		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNQCW010000013.1 Salmonella enterica strain PNUSAS362036 SAMN36387281-rid18767703.denovo.13, whole genome shotgun sequence	83567..83708																																									avrA	ABNQCW010000001.1	446736..447604	100	869	0						
GCA_032549625.1_PDT001814230.1_genomic.fna	Salmonella_enterica	0.5206	326.04 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQDA010000001.1 Salmonella enterica strain PNUSAS362021 SAMN36387206-rid18767693.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQDA010000033.1 Salmonella enterica strain PNUSAS362021 SAMN36387206-rid18767693.guided.18, whole genome shotgun sequence	20663..21100	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQDA010000022.1 Salmonella enterica strain PNUSAS362021 SAMN36387206-rid18767693.denovo.23, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNQDA010000024.1 Salmonella enterica strain PNUSAS362021 SAMN36387206-rid18767693.denovo.27, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	98.93	374 / 374	ABNQDA010000018.1 Salmonella enterica strain PNUSAS362021 SAMN36387206-rid18767693.denovo.19, whole genome shotgun sequence	32011..32384																																									avrA	ABNQDA010000002.1	553696..554565	99.54	870	0						
GCA_032549655.1_PDT001814231.1_genomic.fna	Salmonella_enterica	0.5198	217.869 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNQCZ010000004.1 Salmonella enterica strain PNUSAS361668 SAMN36385432-rid18768633.denovo.04, whole genome shotgun sequence	312911..313348	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNQCZ010000048.1 Salmonella enterica strain PNUSAS361668 SAMN36385432-rid18768633.guided.20, whole genome shotgun sequence	44301..44738	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNQCZ010000026.1 Salmonella enterica strain PNUSAS361668 SAMN36385432-rid18768633.denovo.28, whole genome shotgun sequence	6206..6848	enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABNQCZ010000031.1 Salmonella enterica strain PNUSAS361668 SAMN36385432-rid18768633.denovo.34, whole genome shotgun sequence	18534..19126																																																											
GCA_032550755.1_PDT001814222.1_genomic.fna	Salmonella_enterica	0.5204	272.079 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQDI010000001.1 Salmonella enterica strain PNUSAS361667 SAMN36385449-rid18767633.denovo.01, whole genome shotgun sequence	477381..477818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQDI010000033.1 Salmonella enterica strain PNUSAS361667 SAMN36385449-rid18767633.guided.24, whole genome shotgun sequence	25564..26001	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNQDI010000019.1 Salmonella enterica strain PNUSAS361667 SAMN36385449-rid18767633.denovo.19, whole genome shotgun sequence	2465..2998																																																						avrA	ABNQDI010000011.1	150557..151427	99.196	871	0						
GCA_032550815.1_PDT001814225.1_genomic.fna	Salmonella_enterica	0.5206	366.967 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQDF010000001.1 Salmonella enterica strain PNUSAS362027 SAMN36387197-rid18767653.denovo.01, whole genome shotgun sequence	477459..477896	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQDF010000044.1 Salmonella enterica strain PNUSAS362027 SAMN36387197-rid18767653.guided.19, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQDF010000009.1	150717..151587	99.196	871	0						
GCA_032550995.1_PDT001814208.1_genomic.fna	Salmonella_enterica	0.5215	728.281 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQDP010000001.1 Salmonella enterica strain PNUSAS362019 SAMN36387259-rid18767563.denovo.01, whole genome shotgun sequence	566154..566591	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNQDP010000032.1 Salmonella enterica strain PNUSAS362019 SAMN36387259-rid18767563.guided.19, whole genome shotgun sequence	13675..14112	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNQDP010000003.1	553285..554154	99.655	870	0						
GCA_032551175.1_PDT001814206.1_genomic.fna	Salmonella_enterica	0.5215	257.839 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQDR010000001.1 Salmonella enterica strain PNUSAS362028 SAMN36387193-rid18767543.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQDR010000048.1 Salmonella enterica strain PNUSAS362028 SAMN36387193-rid18767543.guided.28, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNQDR010000018.1 Salmonella enterica strain PNUSAS362028 SAMN36387193-rid18767543.denovo.18, whole genome shotgun sequence	48430..49072	enterobacteriales	IncFII(S)	100	262 / 262	ABNQDR010000018.1 Salmonella enterica strain PNUSAS362028 SAMN36387193-rid18767543.denovo.18, whole genome shotgun sequence	64157..64418																																																avrA	ABNQDR010000004.1	155205..156073	100	869	0						
GCA_032551255.1_PDT001814203.1_genomic.fna	Salmonella_enterica	0.5213	478.496 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQDV010000001.1 Salmonella enterica strain PNUSAS362015 SAMN36387274-rid18767513.denovo.01, whole genome shotgun sequence	774368..774805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQDV010000030.1 Salmonella enterica strain PNUSAS362015 SAMN36387274-rid18767513.guided.19, whole genome shotgun sequence	20663..21100	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQDV010000015.1 Salmonella enterica strain PNUSAS362015 SAMN36387274-rid18767513.denovo.15, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	ABNQDV010000021.1 Salmonella enterica strain PNUSAS362015 SAMN36387274-rid18767513.denovo.24, whole genome shotgun sequence	3395..3656																																																avrA	ABNQDV010000002.1	553648..554517	99.54	870	0						
GCA_032551375.1_PDT001814202.1_genomic.fna	Salmonella_enterica	0.52	269.889 KB	6	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNQDW010000001.1 Salmonella enterica strain PNUSAS362000 SAMN36388854-rid18767503.denovo.01, whole genome shotgun sequence	346944..347381	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNQDW010000039.1 Salmonella enterica strain PNUSAS362000 SAMN36388854-rid18767503.guided.22, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQDW010000007.1	95231..96100	99.54	870	0						
GCA_032551495.1_PDT001814194.1_genomic.fna	Salmonella_enterica	0.5211	257.541 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQEB010000001.1 Salmonella enterica strain PNUSAS362011 SAMN36387235-rid18767423.denovo.01, whole genome shotgun sequence	481507..481944	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQEB010000035.1 Salmonella enterica strain PNUSAS362011 SAMN36387235-rid18767423.guided.27, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQEB010000026.1 Salmonella enterica strain PNUSAS362011 SAMN36387235-rid18767423.denovo.28, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNQEB010000028.1 Salmonella enterica strain PNUSAS362011 SAMN36387235-rid18767423.denovo.31, whole genome shotgun sequence	3407..3668																																																avrA	ABNQEB010000008.1	121475..122344	99.54	870	0						
GCA_032551575.1_PDT001814193.1_genomic.fna	Salmonella_enterica	0.5213	375.59 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQED010000001.1 Salmonella enterica strain PNUSAS362008 SAMN36387250-rid18767413.denovo.01, whole genome shotgun sequence	651706..652143	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQED010000030.1 Salmonella enterica strain PNUSAS362008 SAMN36387250-rid18767413.guided.21, whole genome shotgun sequence	18899..19336	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQED010000021.1 Salmonella enterica strain PNUSAS362008 SAMN36387250-rid18767413.denovo.23, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNQED010000022.1 Salmonella enterica strain PNUSAS362008 SAMN36387250-rid18767413.denovo.25, whole genome shotgun sequence	3446..3707																																																avrA	ABNQED010000002.1	553636..554505	99.54	870	0						
GCA_032551675.1_PDT001814192.1_genomic.fna	Salmonella_enterica	0.5224	200.983 KB	7	aroC_43,dnaN_41,hemD_16,hisD_42,purE_34,sucA_13,thrA_23	305	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_23	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQEC010000001.1 Salmonella enterica strain PNUSAS362007 SAMN36386828-rid18767403.denovo.01, whole genome shotgun sequence	617410..617847	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQEC010000049.1 Salmonella enterica strain PNUSAS362007 SAMN36386828-rid18767403.guided.38, whole genome shotgun sequence	9350..9787	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032551695.1_PDT001814188.1_genomic.fna	Salmonella_enterica	0.5212	328.381 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQEF010000001.1 Salmonella enterica strain PNUSAS362013 SAMN36387223-rid18767363.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQEF010000028.1 Salmonella enterica strain PNUSAS362013 SAMN36387223-rid18767363.guided.19, whole genome shotgun sequence	11525..11962	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQEF010000015.1 Salmonella enterica strain PNUSAS362013 SAMN36387223-rid18767363.denovo.15, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNQEF010000015.1 Salmonella enterica strain PNUSAS362013 SAMN36387223-rid18767363.denovo.15, whole genome shotgun sequence	53092..53353																																																avrA	ABNQEF010000002.1	553312..554181	99.54	870	0						
GCA_032551715.1_PDT001814187.1_genomic.fna	Salmonella_enterica	0.5212	263.473 KB	5	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNQEG010000001.1 Salmonella enterica strain PNUSAS362026 SAMN36387289-rid18767353.denovo.01, whole genome shotgun sequence	346962..347399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNQEG010000033.1 Salmonella enterica strain PNUSAS362026 SAMN36387289-rid18767353.guided.23, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQEG010000006.1	94147..95016	99.54	870	0						
GCA_032551735.1_PDT001814189.1_genomic.fna	Salmonella_enterica	0.5214	275.14 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQEE010000001.1 Salmonella enterica strain PNUSAS362014 SAMN36387214-rid18767373.denovo.01, whole genome shotgun sequence	481568..482005	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQEE010000035.1 Salmonella enterica strain PNUSAS362014 SAMN36387214-rid18767373.guided.21, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQEE010000024.1 Salmonella enterica strain PNUSAS362014 SAMN36387214-rid18767373.denovo.26, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNQEE010000018.1 Salmonella enterica strain PNUSAS362014 SAMN36387214-rid18767373.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABNQEE010000002.1	553636..554505	99.54	870	0						
GCA_032552675.1_PDT001814181.1_genomic.fna	Salmonella_enterica	0.5211	304.38 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQEJ010000001.1 Salmonella enterica strain PNUSAS362010 SAMN36387241-rid18766293.denovo.01, whole genome shotgun sequence	774368..774805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQEJ010000026.1 Salmonella enterica strain PNUSAS362010 SAMN36387241-rid18766293.guided.20, whole genome shotgun sequence	24920..25357	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQEJ010000016.1 Salmonella enterica strain PNUSAS362010 SAMN36387241-rid18766293.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNQEJ010000016.1 Salmonella enterica strain PNUSAS362010 SAMN36387241-rid18766293.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNQEJ010000002.1	175197..176066	99.54	870	0						
GCA_032552935.1_PDT001814171.1_genomic.fna	Salmonella_enterica	0.522	276.925 KB	6	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQES010000004.1 Salmonella enterica strain PNUSAS362029 SAMN36387296-rid18766253.denovo.04, whole genome shotgun sequence	137088..137525	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQES010000023.1 Salmonella enterica strain PNUSAS362029 SAMN36387296-rid18766253.guided.20, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQES010000001.1	590796..591662	98.966	870	0						
GCA_032553115.1_PDT001814168.1_genomic.fna	Salmonella_enterica	0.5213	412.518 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQEW010000001.1 Salmonella enterica strain PNUSAS360880 SAMN36383637-rid18767233.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQEW010000025.1 Salmonella enterica strain PNUSAS360880 SAMN36383637-rid18767233.guided.18, whole genome shotgun sequence	10563..11000	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQEW010000016.1 Salmonella enterica strain PNUSAS360880 SAMN36383637-rid18767233.denovo.17, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNQEW010000017.1 Salmonella enterica strain PNUSAS360880 SAMN36383637-rid18767233.denovo.20, whole genome shotgun sequence	3405..3666																																																avrA	ABNQEW010000002.1	553187..554056	99.54	870	0						
GCA_032559515.1_PDT001814032.1_genomic.fna	Salmonella_enterica	0.521	225.553 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(BS512),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQEX010000002.1 Salmonella enterica strain PNUSAS361669 SAMN36385436-rid18765803.denovo.02, whole genome shotgun sequence	68378..68815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQEX010000046.1 Salmonella enterica strain PNUSAS361669 SAMN36385436-rid18765803.guided.22, whole genome shotgun sequence	11594..12031	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(BS512)	99.57	233 / 233	ABNQEX010000037.1 Salmonella enterica strain PNUSAS361669 SAMN36385436-rid18765803.denovo.40, whole genome shotgun sequence	400..632	enterobacteriales	IncFIB(S)	100	643 / 643	ABNQEX010000018.1 Salmonella enterica strain PNUSAS361669 SAMN36385436-rid18765803.denovo.18, whole genome shotgun sequence	48383..49025		enterobacteriales	IncFII(S)	100	262 / 262	ABNQEX010000018.1 Salmonella enterica strain PNUSAS361669 SAMN36385436-rid18765803.denovo.18, whole genome shotgun sequence	64110..64371																																									avrA	ABNQEX010000004.1	174637..175505	100	869	0						
GCA_032559615.1_PDT001814031.1_genomic.fna	Salmonella_enterica	0.5208	233.97 KB	8	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQEY010000004.1 Salmonella enterica strain PNUSAS360887 SAMN36384439-rid18765793.denovo.04, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQEY010000047.1 Salmonella enterica strain PNUSAS360887 SAMN36384439-rid18765793.guided.23, whole genome shotgun sequence	44293..44730	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNQEY010000023.1 Salmonella enterica strain PNUSAS360887 SAMN36384439-rid18765793.denovo.24, whole genome shotgun sequence	2465..2998																																																						avrA	ABNQEY010000009.1	187383..188252	99.54	870	0						
GCA_032559715.1_PDT001814028.1_genomic.fna	Salmonella_enterica	0.5212	428.344 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQFB010000001.1 Salmonella enterica strain PNUSAS361355 SAMN36384424-rid18765763.denovo.01, whole genome shotgun sequence	645053..645490	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNQFB010000024.1 Salmonella enterica strain PNUSAS361355 SAMN36384424-rid18765763.guided.19, whole genome shotgun sequence	1112..1549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQFB010000006.1	173417..174285	99.54	870	0						
GCA_032559755.1_PDT001814027.1_genomic.fna	Salmonella_enterica	0.521	405.629 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQFC010000004.1 Salmonella enterica strain PNUSAS361670 SAMN36385439-rid18765753.denovo.04, whole genome shotgun sequence	162423..162860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQFC010000024.1 Salmonella enterica strain PNUSAS361670 SAMN36385439-rid18765753.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQFC010000015.1 Salmonella enterica strain PNUSAS361670 SAMN36385439-rid18765753.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNQFC010000015.1 Salmonella enterica strain PNUSAS361670 SAMN36385439-rid18765753.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNQFC010000001.1	553077..553946	99.54	870	0						
GCA_032559775.1_PDT001814026.1_genomic.fna	Salmonella_enterica	0.5191	223.217 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		2	IncFII(pCoo),IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQFD010000001.1 Salmonella enterica strain PNUSAS360886 SAMN36384418-rid18765743.denovo.01, whole genome shotgun sequence	569456..569893	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNQFD010000066.1 Salmonella enterica strain PNUSAS360886 SAMN36384418-rid18765743.guided.11, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNQFD010000038.1 Salmonella enterica strain PNUSAS360886 SAMN36384418-rid18765743.denovo.41, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNQFD010000069.1 Salmonella enterica strain PNUSAS360886 SAMN36384418-rid18765743.guided.46, whole genome shotgun sequence	4110..5315	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFII(pCoo)	95.06	263 / 262	ABNQFD010000023.1 Salmonella enterica strain PNUSAS360886 SAMN36384418-rid18765743.denovo.24, whole genome shotgun sequence	59081..59340	enterobacteriales	IncI2(Delta)	98.42	316 / 316	ABNQFD010000027.1 Salmonella enterica strain PNUSAS360886 SAMN36384418-rid18765743.denovo.28, whole genome shotgun sequence	29969..30284																																																avrA	ABNQFD010000005.1	93865..94734	99.885	870	0						
GCA_032559885.1_PDT001814024.1_genomic.fna	Salmonella_enterica	0.5212	429.378 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQFF010000005.1 Salmonella enterica strain PNUSAS361940 SAMN36384274-rid18765723.denovo.05, whole genome shotgun sequence	293266..293703	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQFF010000028.1 Salmonella enterica strain PNUSAS361940 SAMN36384274-rid18765723.guided.25, whole genome shotgun sequence	271..708	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQFF010000014.1 Salmonella enterica strain PNUSAS361940 SAMN36384274-rid18765723.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNQFF010000014.1 Salmonella enterica strain PNUSAS361940 SAMN36384274-rid18765723.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNQFF010000001.1	585342..586211	99.54	870	0						
GCA_032559955.1_PDT001814021.1_genomic.fna	Salmonella_enterica	0.5216	203.759 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	3	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQFI010000001.1 Salmonella enterica strain PNUSAS361942 SAMN36384277-rid18765693.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQFI010000052.1 Salmonella enterica strain PNUSAS361942 SAMN36384277-rid18765693.guided.36, whole genome shotgun sequence	3079..3516	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNQFI010000026.1 Salmonella enterica strain PNUSAS361942 SAMN36384277-rid18765693.denovo.26, whole genome shotgun sequence	11372..12571	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQFI010000053.1 Salmonella enterica strain PNUSAS361942 SAMN36384277-rid18765693.guided.37, whole genome shotgun sequence	5677..6876	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNQFI010000036.1 Salmonella enterica strain PNUSAS361942 SAMN36384277-rid18765693.denovo.39, whole genome shotgun sequence	1340..1813	Trimethoprim	AF393510	dfrA14	100	474/474	ABNQFI010000055.1 Salmonella enterica strain PNUSAS361942 SAMN36384277-rid18765693.guided.48, whole genome shotgun sequence	628..1101	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQFI010000029.1 Salmonella enterica strain PNUSAS361942 SAMN36384277-rid18765693.denovo.29, whole genome shotgun sequence	9109..9668																																																						avrA	ABNQFI010000002.1	149828..150697	99.655	870	0						
GCA_032559975.1_PDT001814022.1_genomic.fna	Salmonella_enterica	0.5206	406.452 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		4	IncFIB(S),IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQFH010000002.1 Salmonella enterica strain PNUSAS361944 SAMN36384280-rid18765703.denovo.02, whole genome shotgun sequence	185269..185706	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQFH010000018.1 Salmonella enterica strain PNUSAS361944 SAMN36384280-rid18765703.denovo.18, whole genome shotgun sequence	17694..18530	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNQFH010000018.1 Salmonella enterica strain PNUSAS361944 SAMN36384280-rid18765703.denovo.18, whole genome shotgun sequence	18530..19333	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNQFH010000033.1 Salmonella enterica strain PNUSAS361944 SAMN36384280-rid18765703.guided.27, whole genome shotgun sequence	1861..2697	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNQFH010000033.1 Salmonella enterica strain PNUSAS361944 SAMN36384280-rid18765703.guided.27, whole genome shotgun sequence	1058..1861	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNQFH010000036.1 Salmonella enterica strain PNUSAS361944 SAMN36384280-rid18765703.guided.30, whole genome shotgun sequence	1824..2261	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNQFH010000018.1 Salmonella enterica strain PNUSAS361944 SAMN36384280-rid18765703.denovo.18, whole genome shotgun sequence	25850..26710	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNQFH010000032.1 Salmonella enterica strain PNUSAS361944 SAMN36384280-rid18765703.guided.26, whole genome shotgun sequence	3944..4804	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNQFH010000018.1 Salmonella enterica strain PNUSAS361944 SAMN36384280-rid18765703.denovo.18, whole genome shotgun sequence	19394..20209	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNQFH010000033.1 Salmonella enterica strain PNUSAS361944 SAMN36384280-rid18765703.guided.27, whole genome shotgun sequence	182..997	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNQFH010000018.1 Salmonella enterica strain PNUSAS361944 SAMN36384280-rid18765703.denovo.18, whole genome shotgun sequence	23722..24921	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQFH010000031.1 Salmonella enterica strain PNUSAS361944 SAMN36384280-rid18765703.guided.24, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQFH010000015.1 Salmonella enterica strain PNUSAS361944 SAMN36384280-rid18765703.denovo.15, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	ABNQFH010000022.1 Salmonella enterica strain PNUSAS361944 SAMN36384280-rid18765703.denovo.22, whole genome shotgun sequence	3392..3653		enterobacteriales	IncN	100	514 / 514	ABNQFH010000018.1 Salmonella enterica strain PNUSAS361944 SAMN36384280-rid18765703.denovo.18, whole genome shotgun sequence	705..1218		enterobacteriales	IncX1	98.66	374 / 374	ABNQFH010000016.1 Salmonella enterica strain PNUSAS361944 SAMN36384280-rid18765703.denovo.16, whole genome shotgun sequence	6057..6430																																		avrA	ABNQFH010000001.1	552981..553850	99.54	870	0						
GCA_032559995.1_PDT001814020.1_genomic.fna	Salmonella_enterica	0.5223	728.678 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQFJ010000001.1 Salmonella enterica strain PNUSAS361548 SAMN36383953-rid18765683.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNQFJ010000018.1 Salmonella enterica strain PNUSAS361548 SAMN36383953-rid18765683.guided.14, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNQFJ010000003.1	553682..554551	99.655	870	0						
GCA_032560035.1_PDT001814019.1_genomic.fna	Salmonella_enterica	0.5196	173.301 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNQFL010000001.1 Salmonella enterica strain PNUSAS361555 SAMN36383970-rid18765673.denovo.01, whole genome shotgun sequence	147579..148016	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNQFL010000041.1 Salmonella enterica strain PNUSAS361555 SAMN36383970-rid18765673.guided.33, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNQFL010000030.1 Salmonella enterica strain PNUSAS361555 SAMN36383970-rid18765673.denovo.32, whole genome shotgun sequence	4138..4780																																																																	
GCA_032560135.1_PDT001814018.1_genomic.fna	Salmonella_enterica	0.5228	337.044 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQFK010000001.1 Salmonella enterica strain PNUSAS361549 SAMN36383956-rid18765663.denovo.01, whole genome shotgun sequence	394198..394635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQFK010000034.1 Salmonella enterica strain PNUSAS361549 SAMN36383956-rid18765663.guided.25, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032560155.1_PDT001814016.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQFN010000001.1 Salmonella enterica strain PNUSAS361947 SAMN36384286-rid18765643.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQFN010000027.1 Salmonella enterica strain PNUSAS361947 SAMN36384286-rid18765643.guided.23, whole genome shotgun sequence	428..865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQFN010000013.1 Salmonella enterica strain PNUSAS361947 SAMN36384286-rid18765643.denovo.13, whole genome shotgun sequence	40558..41200	enterobacteriales	IncFII(S)	100	262 / 262	ABNQFN010000017.1 Salmonella enterica strain PNUSAS361947 SAMN36384286-rid18765643.denovo.17, whole genome shotgun sequence	3395..3656																																																avrA	ABNQFN010000002.1	553642..554511	99.54	870	0						
GCA_032560195.1_PDT001814015.1_genomic.fna	Salmonella_enterica	0.5212	406.073 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	4	aac(6')-Iaa,aac(6')-Iaa,floR,floR,qnrS1,qnrS1,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQFP010000001.1 Salmonella enterica strain PNUSAS361951 SAMN36384289-rid18765633.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQFP010000032.1 Salmonella enterica strain PNUSAS361951 SAMN36384289-rid18765633.guided.27, whole genome shotgun sequence	1051..1488	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	ABNQFP010000013.1 Salmonella enterica strain PNUSAS361951 SAMN36384289-rid18765633.denovo.13, whole genome shotgun sequence	88381..89594	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNQFP010000028.1 Salmonella enterica strain PNUSAS361951 SAMN36384289-rid18765633.guided.23, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNQFP010000013.1 Salmonella enterica strain PNUSAS361951 SAMN36384289-rid18765633.denovo.13, whole genome shotgun sequence	80743..81399	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNQFP010000031.1 Salmonella enterica strain PNUSAS361951 SAMN36384289-rid18765633.guided.26, whole genome shotgun sequence	1478..2134	Ciprofloxacin	AB187515	tet(A)	100	1275/1275	ABNQFP010000013.1 Salmonella enterica strain PNUSAS361951 SAMN36384289-rid18765633.denovo.13, whole genome shotgun sequence	86506..87780	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNQFP010000033.1 Salmonella enterica strain PNUSAS361951 SAMN36384289-rid18765633.guided.30, whole genome shotgun sequence	114..1388	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQFP010000016.1 Salmonella enterica strain PNUSAS361951 SAMN36384289-rid18765633.denovo.16, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNQFP010000019.1 Salmonella enterica strain PNUSAS361951 SAMN36384289-rid18765633.denovo.19, whole genome shotgun sequence	3446..3707		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNQFP010000013.1 Salmonella enterica strain PNUSAS361951 SAMN36384289-rid18765633.denovo.13, whole genome shotgun sequence	96226..96367																																									avrA	ABNQFP010000002.1	553177..554046	99.54	870	0						
GCA_032560235.1_PDT001814014.1_genomic.fna	Salmonella_enterica	0.5212	478.612 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQFQ010000001.1 Salmonella enterica strain PNUSAS361946 SAMN36384283-rid18765623.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQFQ010000025.1 Salmonella enterica strain PNUSAS361946 SAMN36384283-rid18765623.guided.22, whole genome shotgun sequence	2797..3234	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQFQ010000013.1 Salmonella enterica strain PNUSAS361946 SAMN36384283-rid18765623.denovo.13, whole genome shotgun sequence	40545..41187	enterobacteriales	IncFII(S)	100	262 / 262	ABNQFQ010000017.1 Salmonella enterica strain PNUSAS361946 SAMN36384283-rid18765623.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABNQFQ010000002.1	585342..586211	99.54	870	0						
GCA_032560335.1_PDT001814012.1_genomic.fna	Salmonella_enterica	0.5212	762.444 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQFR010000001.1 Salmonella enterica strain PNUSAS361844 SAMN36384269-rid18765603.denovo.01, whole genome shotgun sequence	481950..482387	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNQFR010000017.1 Salmonella enterica strain PNUSAS361844 SAMN36384269-rid18765603.guided.08, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNQFR010000004.1	553688..554557	99.655	870	0						
GCA_032561395.1_PDT001814005.1_genomic.fna	Salmonella_enterica	0.521	412.182 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQFV010000001.1 Salmonella enterica strain PNUSAS360879 SAMN36383635-rid18765533.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQFV010000029.1 Salmonella enterica strain PNUSAS360879 SAMN36383635-rid18765533.guided.18, whole genome shotgun sequence	94..531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQFV010000019.1 Salmonella enterica strain PNUSAS360879 SAMN36383635-rid18765533.denovo.20, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNQFV010000020.1 Salmonella enterica strain PNUSAS360879 SAMN36383635-rid18765533.denovo.23, whole genome shotgun sequence	3402..3663																																																avrA	ABNQFV010000002.1	553181..554050	99.54	870	0						
GCA_032561415.1_PDT001814009.1_genomic.fna	Salmonella_enterica	0.5206	259.423 KB	8	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQFU010000007.1 Salmonella enterica strain PNUSAS361823 SAMN36383930-rid18765573.denovo.07, whole genome shotgun sequence	130616..131053	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQFU010000047.1 Salmonella enterica strain PNUSAS361823 SAMN36383930-rid18765573.guided.31, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNQFU010000023.1 Salmonella enterica strain PNUSAS361823 SAMN36383930-rid18765573.denovo.23, whole genome shotgun sequence	2740..3273																																																						avrA	ABNQFU010000021.1	39348..40218	99.196	871	0						
GCA_032561475.1_PDT001814006.1_genomic.fna	Salmonella_enterica	0.5213	192.137 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQFX010000004.1 Salmonella enterica strain PNUSAS361822 SAMN36383927-rid18765543.denovo.04, whole genome shotgun sequence	145200..145637	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNQFX010000056.1 Salmonella enterica strain PNUSAS361822 SAMN36383927-rid18765543.guided.40, whole genome shotgun sequence	7913..8350	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNQFX010000034.1 Salmonella enterica strain PNUSAS361822 SAMN36383927-rid18765543.denovo.35, whole genome shotgun sequence	24704..25346	enterobacteriales	IncFII(S)	100	262 / 262	ABNQFX010000034.1 Salmonella enterica strain PNUSAS361822 SAMN36383927-rid18765543.denovo.35, whole genome shotgun sequence	9358..9619																																																avrA	ABNQFX010000005.1	39729..40598	99.885	870	0						
GCA_032561535.1_PDT001814004.1_genomic.fna	Salmonella_enterica	0.5229	269.482 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQFY010000001.1 Salmonella enterica strain PNUSAS360875 SAMN36383627-rid18765523.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQFY010000034.1 Salmonella enterica strain PNUSAS360875 SAMN36383627-rid18765523.guided.24, whole genome shotgun sequence	18101..18538	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQFY010000002.1	95072..95941	99.655	870	0						
GCA_032561595.1_PDT001814002.1_genomic.fna	Salmonella_enterica	0.521	299.101 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQGA010000012.1 Salmonella enterica strain PNUSAS360881 SAMN36383640-rid18765503.denovo.12, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQGA010000039.1 Salmonella enterica strain PNUSAS360881 SAMN36383640-rid18765503.guided.26, whole genome shotgun sequence	10626..11063	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNQGA010000019.1 Salmonella enterica strain PNUSAS360881 SAMN36383640-rid18765503.denovo.19, whole genome shotgun sequence	34957..35490																																																						avrA	ABNQGA010000001.1	187683..188549	98.966	870	0						
GCA_032561615.1_PDT001814003.1_genomic.fna	Salmonella_enterica	0.5228	386.966 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQFZ010000001.1 Salmonella enterica strain PNUSAS360878 SAMN36383633-rid18765513.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQFZ010000036.1 Salmonella enterica strain PNUSAS360878 SAMN36383633-rid18765513.guided.24, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQFZ010000003.1	39490..40359	99.655	870	0						
GCA_032561655.1_PDT001814000.1_genomic.fna	Salmonella_enterica	0.5209	406.453 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQGC010000001.1 Salmonella enterica strain PNUSAS361556 SAMN36383611-rid18765483.denovo.01, whole genome shotgun sequence	774480..774917	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQGC010000025.1 Salmonella enterica strain PNUSAS361556 SAMN36383611-rid18765483.guided.15, whole genome shotgun sequence	20619..21056	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQGC010000015.1 Salmonella enterica strain PNUSAS361556 SAMN36383611-rid18765483.denovo.16, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNQGC010000019.1 Salmonella enterica strain PNUSAS361556 SAMN36383611-rid18765483.denovo.22, whole genome shotgun sequence	3395..3656																																																avrA	ABNQGC010000009.1	175070..175939	99.54	870	0						
GCA_032561695.1_PDT001813999.1_genomic.fna	Salmonella_enterica	0.5207	379.395 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	5	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,floR,floR,qnrS1,qnrS1,tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQGD010000001.1 Salmonella enterica strain PNUSAS360871 SAMN36383618-rid18765463.denovo.01, whole genome shotgun sequence	486107..486544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQGD010000037.1 Salmonella enterica strain PNUSAS360871 SAMN36383618-rid18765463.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNQGD010000006.1 Salmonella enterica strain PNUSAS360871 SAMN36383618-rid18765463.denovo.06, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNQGD010000038.1 Salmonella enterica strain PNUSAS360871 SAMN36383618-rid18765463.guided.30, whole genome shotgun sequence	9364..9786	Fosfomycin	LAPJ01000014	floR	98.19	1214/1215	ABNQGD010000027.1 Salmonella enterica strain PNUSAS360871 SAMN36383618-rid18765463.denovo.29, whole genome shotgun sequence	8664..9877	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNQGD010000041.1 Salmonella enterica strain PNUSAS360871 SAMN36383618-rid18765463.guided.34, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNQGD010000027.1 Salmonella enterica strain PNUSAS360871 SAMN36383618-rid18765463.denovo.29, whole genome shotgun sequence	1026..1682	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNQGD010000040.1 Salmonella enterica strain PNUSAS360871 SAMN36383618-rid18765463.guided.32, whole genome shotgun sequence	1067..1723	Ciprofloxacin	AB187515	tet(A)	100	1275/1275	ABNQGD010000027.1 Salmonella enterica strain PNUSAS360871 SAMN36383618-rid18765463.denovo.29, whole genome shotgun sequence	6789..8063	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNQGD010000042.1 Salmonella enterica strain PNUSAS360871 SAMN36383618-rid18765463.guided.35, whole genome shotgun sequence	1444..2718	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNQGD010000026.1 Salmonella enterica strain PNUSAS360871 SAMN36383618-rid18765463.denovo.26, whole genome shotgun sequence	8703..8953																																																						avrA	ABNQGD010000002.1	151209..152078	99.195	870	0						
GCA_032561715.1_PDT001814001.1_genomic.fna	Salmonella_enterica	0.5212	225.555 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQGB010000001.1 Salmonella enterica strain PNUSAS360876 SAMN36383629-rid18765493.denovo.01, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQGB010000049.1 Salmonella enterica strain PNUSAS360876 SAMN36383629-rid18765493.guided.28, whole genome shotgun sequence	37827..38264	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNQGB010000021.1 Salmonella enterica strain PNUSAS360876 SAMN36383629-rid18765493.denovo.21, whole genome shotgun sequence	65921..67126	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNQGB010000052.1 Salmonella enterica strain PNUSAS360876 SAMN36383629-rid18765493.guided.36, whole genome shotgun sequence	4055..5260	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	100	643 / 643	ABNQGB010000031.1 Salmonella enterica strain PNUSAS360876 SAMN36383629-rid18765493.denovo.33, whole genome shotgun sequence	6833..7475	enterobacteriales	IncFII(S)	100	262 / 262	ABNQGB010000029.1 Salmonella enterica strain PNUSAS360876 SAMN36383629-rid18765493.denovo.31, whole genome shotgun sequence	29371..29632		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNQGB010000021.1 Salmonella enterica strain PNUSAS360876 SAMN36383629-rid18765493.denovo.21, whole genome shotgun sequence	73512..73653																																									avrA	ABNQGB010000003.1	209222..210090	100	869	0						
GCA_032561795.1_PDT001813997.1_genomic.fna	Salmonella_enterica	0.5222	391.761 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQGF010000001.1 Salmonella enterica strain PNUSAS360872 SAMN36383620-rid18765443.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQGF010000032.1 Salmonella enterica strain PNUSAS360872 SAMN36383620-rid18765443.guided.24, whole genome shotgun sequence	9039..9476	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQGF010000003.1	120799..121668	99.31	870	0						
GCA_032561815.1_PDT001813998.1_genomic.fna	Salmonella_enterica	0.522	601.989 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	17	aac(6')-Iaa,aadA1,aadA1,aac(3)-IIa,aac(6')-Ib-cr,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aac(3)-IIa,aac(6')-Ib-cr,aph(3')-Ia,blaOXA-10,blaCTX-M-15,blaTEM-1B,blaOXA-1,blaOXA-10,blaCTX-M-15,blaTEM-1B,blaOXA-1,mph(A),mph(A),floR,cmlA1,cmlA1,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul1,sul2,sul1,dfrA14,dfrA14	0		1	IncC	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQGE010000001.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.01, whole genome shotgun sequence	1367034..1367471	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQGE010000016.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.18, whole genome shotgun sequence	10675..11466	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQGE010000016.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.18, whole genome shotgun sequence	10675..11466	Spectinomycin, Streptomycin	JQ414041	aac(3)-IIa	100	861/861	ABNQGE010000021.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.30, whole genome shotgun sequence	1696..2556	Gentamicin, Tobramycin, Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	CP023555	aac(6')-Ib-cr	100	600/600	ABNQGE010000022.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.32, whole genome shotgun sequence	1540..2139	Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin, Ciprofloxacin	DQ303918	aph(3')-Ia	100	816/816	ABNQGE010000025.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.37, whole genome shotgun sequence	128..943	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	aac(6')-Iaa	99.54	438/438	ABNQGE010000031.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.14, whole genome shotgun sequence	39029..39466	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQGE010000035.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.21, whole genome shotgun sequence	5255..6046	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQGE010000035.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.21, whole genome shotgun sequence	5255..6046	Spectinomycin, Streptomycin	JQ414041	aac(3)-IIa	100	861/861	ABNQGE010000039.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.29, whole genome shotgun sequence	84..944	Gentamicin, Tobramycin, Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	CP023555	aac(6')-Ib-cr	100	600/600	ABNQGE010000040.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.31, whole genome shotgun sequence	86..685	Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin, Ciprofloxacin	DQ303918	aph(3')-Ia	100	816/816	ABNQGE010000042.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.36, whole genome shotgun sequence	106..921	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	blaOXA-10	100	801/801	ABNQGE010000016.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.18, whole genome shotgun sequence	11483..12283	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaCTX-M-15	100	876/876	ABNQGE010000017.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.22, whole genome shotgun sequence	4202..5077	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	ABNQGE010000017.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.22, whole genome shotgun sequence	520..1380	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaOXA-1	100	831/831	ABNQGE010000022.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.32, whole genome shotgun sequence	579..1409	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Piperacillin, Piperacillin+Tazobactam	HQ170510	blaOXA-10	100	801/801	ABNQGE010000035.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.21, whole genome shotgun sequence	4438..5238	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaCTX-M-15	100	876/876	ABNQGE010000036.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.23, whole genome shotgun sequence	3869..4744	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	ABNQGE010000036.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.23, whole genome shotgun sequence	187..1047	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaOXA-1	100	831/831	ABNQGE010000040.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.31, whole genome shotgun sequence	816..1646	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Piperacillin, Piperacillin+Tazobactam	HQ170510	mph(A)	100	906/906	ABNQGE010000018.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.24, whole genome shotgun sequence	4968..5873	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	ABNQGE010000041.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.34, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.35	1214/1215	ABNQGE010000013.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.13, whole genome shotgun sequence	74554..75767	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.68	1260/1260	ABNQGE010000016.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.18, whole genome shotgun sequence	12548..13807	Chloramphenicol	M64556	cmlA1	99.68	1260/1260	ABNQGE010000035.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.21, whole genome shotgun sequence	2914..4173	Chloramphenicol	M64556	floR	98.35	1214/1215	ABNQGE010000038.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.28, whole genome shotgun sequence	954..2167	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNQGE010000020.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.27, whole genome shotgun sequence	1257..1913	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNQGE010000037.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.26, whole genome shotgun sequence	1412..2068	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNQGE010000016.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.18, whole genome shotgun sequence	14128..14580	Rifampicin	HQ141279	ARR-2	100	453/453	ABNQGE010000035.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.21, whole genome shotgun sequence	2141..2593	Rifampicin	HQ141279	sul2	100	816/816	ABNQGE010000013.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.13, whole genome shotgun sequence	71235..72050	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNQGE010000016.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.18, whole genome shotgun sequence	9331..10170	Sulfamethoxazole	U12338	sul2	100	816/816	ABNQGE010000032.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.17, whole genome shotgun sequence	17385..18200	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNQGE010000035.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.21, whole genome shotgun sequence	6551..7390	Sulfamethoxazole	U12338	dfrA14	100	474/474	ABNQGE010000016.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.18, whole genome shotgun sequence	14691..15164	Trimethoprim	KF921535	dfrA14	100	474/474	ABNQGE010000035.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.guided.21, whole genome shotgun sequence	1557..2030	Trimethoprim	KF921535																																																																																																																																																																																																																																enterobacteriales	IncC	100	417 / 417	ABNQGE010000014.1 Salmonella enterica strain PNUSAS360874 SAMN36383624-rid18765453.denovo.15, whole genome shotgun sequence	29292..29708																																																						avrA	ABNQGE010000002.1	554136..554994	98.506	870	0						
GCA_032561855.1_PDT001813996.1_genomic.fna	Salmonella_enterica	0.5222	106.57 KB	13	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQGG010000032.1 Salmonella enterica strain PNUSAS360884 SAMN36383501-rid18765433.denovo.32, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQGG010000067.1 Salmonella enterica strain PNUSAS360884 SAMN36383501-rid18765433.guided.51, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABNQGG010000042.1 Salmonella enterica strain PNUSAS360884 SAMN36383501-rid18765433.denovo.42, whole genome shotgun sequence	17320..17579																																																																	
GCA_032561915.1_PDT001813995.1_genomic.fna	Salmonella_enterica	0.5219	304.931 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQGH010000002.1 Salmonella enterica strain PNUSAS360882 SAMN36383496-rid18765423.denovo.02, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQGH010000036.1 Salmonella enterica strain PNUSAS360882 SAMN36383496-rid18765423.guided.28, whole genome shotgun sequence	24486..24923	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNQGH010000022.1 Salmonella enterica strain PNUSAS360882 SAMN36383496-rid18765423.denovo.22, whole genome shotgun sequence	44718..45360	enterobacteriales	IncFII(S)	100	262 / 262	ABNQGH010000022.1 Salmonella enterica strain PNUSAS360882 SAMN36383496-rid18765423.denovo.22, whole genome shotgun sequence	29372..29633																																																avrA	ABNQGH010000005.1	175008..175876	100	869	0						
GCA_032561975.1_PDT001813994.1_genomic.fna	Salmonella_enterica	0.5228	269.482 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQGI010000001.1 Salmonella enterica strain PNUSAS360883 SAMN36383498-rid18765413.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQGI010000034.1 Salmonella enterica strain PNUSAS360883 SAMN36383498-rid18765413.guided.20, whole genome shotgun sequence	1463..1900	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQGI010000003.1	149828..150697	99.655	870	0						
GCA_032562075.1_PDT001813990.1_genomic.fna	Salmonella_enterica	0.5215	529.056 KB	4	aroC_5,dnaN_75,hemD_8,hisD_96,purE_39,sucA_394,thrA_97	3203	35:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_75	hemD	100	100	hemD_8	hisD	100	100	hisD_96	purE	100	100	purE_39	sucA	100	100	sucA_394	thrA	100	100	thrA_97	35	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Monschaui		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQGL010000002.1 Salmonella enterica strain PNUSAS361875 SAMN36383128-rid18765473.denovo.02, whole genome shotgun sequence	491665..492102	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQGL010000028.1 Salmonella enterica strain PNUSAS361875 SAMN36383128-rid18765473.guided.22, whole genome shotgun sequence	4102..4539	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032562115.1_PDT001813989.1_genomic.fna	Salmonella_enterica	0.5215	223.58 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	17	aac(6')-Iaa,aac(3)-IId,aph(3')-Ia,aadA16,aac(6')-Ib-cr,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aph(3')-Ia,aac(6')-Ib-cr,aadA16,blaTEM-1B,blaTEM-1B,mph(A),msr(E),mph(E),mph(A),msr(E),mph(E),ARR-3,ARR-3,sul1,sul2,sul2,sul1,tet(B),tet(B),dfrA27,dfrA27,bleO,bleO	0		1	IncFIB(K)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQGM010000001.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.01, whole genome shotgun sequence	145151..145588	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNQGM010000040.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.41, whole genome shotgun sequence	7138..7998	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNQGM010000040.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.41, whole genome shotgun sequence	8521..9336	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	X62115	aadA16	99.65	846/846	ABNQGM010000042.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.43, whole genome shotgun sequence	4681..5526	Spectinomycin, Streptomycin	EU675686	aac(6')-Ib-cr	100	600/600	ABNQGM010000042.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.43, whole genome shotgun sequence	6862..7461	Ciprofloxacin, Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin	DQ303918	aph(6)-Id	100	837/837	ABNQGM010000048.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.52, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNQGM010000048.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.52, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNQGM010000068.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.25, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQGM010000071.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.51, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNQGM010000071.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.51, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNQGM010000076.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.63, whole genome shotgun sequence	1444..2304	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNQGM010000076.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.63, whole genome shotgun sequence	106..921	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	X62115	aac(6')-Ib-cr	100	600/600	ABNQGM010000078.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.69, whole genome shotgun sequence	29..628	Ciprofloxacin, Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin	DQ303918	aadA16	99.65	846/846	ABNQGM010000080.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.74, whole genome shotgun sequence	29..874	Spectinomycin, Streptomycin	EU675686	blaTEM-1B	100	861/861	ABNQGM010000058.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.68, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNQGM010000077.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.67, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNQGM010000035.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.36, whole genome shotgun sequence	67..972	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	msr(E)	100	1476/1476	ABNQGM010000055.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.64, whole genome shotgun sequence	443..1918	Erythromycin, Azithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S	FR751518	mph(E)	100	885/885	ABNQGM010000055.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.64, whole genome shotgun sequence	1974..2858	Erythromycin	DQ839391	mph(A)	100	906/906	ABNQGM010000070.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.45, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	msr(E)	100	1476/1476	ABNQGM010000075.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.61, whole genome shotgun sequence	482..1957	Erythromycin, Azithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S	FR751518	mph(E)	100	885/885	ABNQGM010000075.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.61, whole genome shotgun sequence	2013..2897	Erythromycin	DQ839391	ARR-3	100	453/453	ABNQGM010000042.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.43, whole genome shotgun sequence	6313..6765	Rifampicin	JF806499	ARR-3	100	453/453	ABNQGM010000078.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.69, whole genome shotgun sequence	725..1177	Rifampicin	JF806499	sul1	100	840/840	ABNQGM010000042.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.43, whole genome shotgun sequence	3384..4223	Sulfamethoxazole	U12338	sul2	100	816/816	ABNQGM010000048.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.52, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNQGM010000071.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.51, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABNQGM010000073.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.59, whole genome shotgun sequence	389..1228	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABNQGM010000038.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.39, whole genome shotgun sequence	5881..7086	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNQGM010000074.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.60, whole genome shotgun sequence	1384..2589	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA27	100	474/474	ABNQGM010000042.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.43, whole genome shotgun sequence	5707..6180	Trimethoprim	FJ459817	dfrA27	100	474/474	ABNQGM010000078.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.69, whole genome shotgun sequence	1310..1783	Trimethoprim	FJ459817	bleO	100	392/399	ABNQGM010000059.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.71, whole genome shotgun sequence	135..526	Bleomycin	AF051917	bleO	100	392/399	ABNQGM010000079.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.guided.70, whole genome shotgun sequence	176..567	Bleomycin	AF051917																																																																																																																																																																																																																																														enterobacteriales	IncFIB(K)	99.82	560 / 560	ABNQGM010000037.1 Salmonella enterica strain PNUSAS361881 SAMN36383125-rid18765373.denovo.38, whole genome shotgun sequence	4610..5169																																																						avrA	ABNQGM010000002.1	434527..435396	99.885	870	0						
GCA_032562175.1_PDT001813988.1_genomic.fna	Salmonella_enterica	0.5218	430.868 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQGP010000002.1 Salmonella enterica strain PNUSAS361866 SAMN36383118-rid18765363.denovo.02, whole genome shotgun sequence	145313..145750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNQGP010000023.1 Salmonella enterica strain PNUSAS361866 SAMN36383118-rid18765363.guided.15, whole genome shotgun sequence	7220..7657	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNQGP010000004.1	401169..402038	99.655	870	0						
GCA_032562315.1_PDT001813984.1_genomic.fna	Salmonella_enterica	0.5217	229.235 KB	6	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncB/O/K/Z	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNQGR010000001.1 Salmonella enterica strain PNUSAS361880 SAMN36383047-rid18765323.denovo.01, whole genome shotgun sequence	494523..494960	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNQGR010000035.1 Salmonella enterica strain PNUSAS361880 SAMN36383047-rid18765323.guided.27, whole genome shotgun sequence	1718..2155	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncB/O/K/Z	92	150 / 149	ABNQGR010000019.1 Salmonella enterica strain PNUSAS361880 SAMN36383047-rid18765323.denovo.19, whole genome shotgun sequence	81033..81181																																																						avrA	ABNQGR010000002.1	39471..40340	99.31	870	0						
GCA_032562355.1_PDT001813982.1_genomic.fna	Salmonella_enterica	0.5211	415.418 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQGT010000001.1 Salmonella enterica strain PNUSAS361882 SAMN36383111-rid18765303.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQGT010000044.1 Salmonella enterica strain PNUSAS361882 SAMN36383111-rid18765303.guided.20, whole genome shotgun sequence	11040..11477	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQGT010000029.1 Salmonella enterica strain PNUSAS361882 SAMN36383111-rid18765303.denovo.31, whole genome shotgun sequence	10191..10750																																																						avrA	ABNQGT010000004.1	39430..40299	99.655	870	0						
GCA_032562395.1_PDT001813983.1_genomic.fna	Salmonella_enterica	0.5204	426.39 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNQGS010000005.1 Salmonella enterica strain PNUSAS361869 SAMN36383120-rid18765313.denovo.05, whole genome shotgun sequence	255279..255716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNQGS010000025.1 Salmonella enterica strain PNUSAS361869 SAMN36383120-rid18765313.guided.20, whole genome shotgun sequence	4957..5394	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNQGS010000016.1 Salmonella enterica strain PNUSAS361869 SAMN36383120-rid18765313.denovo.16, whole genome shotgun sequence	34958..35491																																																						avrA	ABNQGS010000003.1	544156..545024	99.425	870	0						
GCA_032562435.1_PDT001813981.1_genomic.fna	Salmonella_enterica	0.5203	489.548 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQGU010000001.1 Salmonella enterica strain PNUSAS361865 SAMN36383123-rid18765293.denovo.01, whole genome shotgun sequence	771877..772314	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQGU010000026.1 Salmonella enterica strain PNUSAS361865 SAMN36383123-rid18765293.guided.15, whole genome shotgun sequence	23044..23481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQGU010000014.1 Salmonella enterica strain PNUSAS361865 SAMN36383123-rid18765293.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNQGU010000014.1 Salmonella enterica strain PNUSAS361865 SAMN36383123-rid18765293.denovo.14, whole genome shotgun sequence	5032..5293		enterobacteriales	IncX1	98.93	374 / 374	ABNQGU010000015.1 Salmonella enterica strain PNUSAS361865 SAMN36383123-rid18765293.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABNQGU010000002.1	553182..554051	99.54	870	0						
GCA_032562515.1_PDT001813980.1_genomic.fna	Salmonella_enterica	0.5216	382.632 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQGX010000001.1 Salmonella enterica strain PNUSAS361871 SAMN36383115-rid18765283.denovo.01, whole genome shotgun sequence	477376..477813	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQGX010000029.1 Salmonella enterica strain PNUSAS361871 SAMN36383115-rid18765283.guided.22, whole genome shotgun sequence	12080..12517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQGX010000010.1	150695..151565	99.196	871	0						
GCA_032562535.1_PDT001813979.1_genomic.fna	Salmonella_enterica	0.5226	242.785 KB	8	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440I,ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNQGV010000002.1 Salmonella enterica strain PNUSAS361887 SAMN36383040-rid18765273.denovo.02, whole genome shotgun sequence	149811..150248	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNQGV010000045.1 Salmonella enterica strain PNUSAS361887 SAMN36383040-rid18765273.guided.29, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNQGV010000030.1 Salmonella enterica strain PNUSAS361887 SAMN36383040-rid18765273.denovo.33, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNQGV010000031.1 Salmonella enterica strain PNUSAS361887 SAMN36383040-rid18765273.denovo.34, whole genome shotgun sequence	2528..2639		enterobacteriales	ColpVC	98.96	193 / 193	ABNQGV010000038.1 Salmonella enterica strain PNUSAS361887 SAMN36383040-rid18765273.denovo.41, whole genome shotgun sequence	793..985																																									avrA	ABNQGV010000001.1	406061..406929	99.425	870	0						
GCA_032562555.1_PDT001813978.1_genomic.fna	Salmonella_enterica	0.5206	469.651 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQGW010000001.1 Salmonella enterica strain PNUSAS361868 SAMN36383053-rid18765263.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQGW010000029.1 Salmonella enterica strain PNUSAS361868 SAMN36383053-rid18765263.guided.21, whole genome shotgun sequence	6100..6537	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQGW010000016.1 Salmonella enterica strain PNUSAS361868 SAMN36383053-rid18765263.denovo.16, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNQGW010000016.1 Salmonella enterica strain PNUSAS361868 SAMN36383053-rid18765263.denovo.16, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNQGW010000017.1 Salmonella enterica strain PNUSAS361868 SAMN36383053-rid18765263.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABNQGW010000007.1	175109..175978	99.54	870	0						
GCA_032562575.1_PDT001813977.1_genomic.fna	Salmonella_enterica	0.5213	405.726 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQGY010000001.1 Salmonella enterica strain PNUSAS361879 SAMN36383051-rid18765253.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABNQGY010000027.1 Salmonella enterica strain PNUSAS361879 SAMN36383051-rid18765253.guided.18, whole genome shotgun sequence	10545..10982	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQGY010000028.1 Salmonella enterica strain PNUSAS361879 SAMN36383051-rid18765253.guided.19, whole genome shotgun sequence	10545..10982	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQGY010000015.1 Salmonella enterica strain PNUSAS361879 SAMN36383051-rid18765253.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNQGY010000015.1 Salmonella enterica strain PNUSAS361879 SAMN36383051-rid18765253.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNQGY010000002.1	553076..553945	99.54	870	0						
GCA_032562655.1_PDT001813976.1_genomic.fna	Salmonella_enterica	0.5211	388.958 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQGZ010000001.1 Salmonella enterica strain PNUSAS361867 SAMN36383026-rid18765243.denovo.01, whole genome shotgun sequence	498277..498714	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQGZ010000021.1 Salmonella enterica strain PNUSAS361867 SAMN36383026-rid18765243.guided.18, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032563515.1_PDT001813974.1_genomic.fna	Salmonella_enterica	0.5214	478.496 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQHB010000001.1 Salmonella enterica strain PNUSAS361861 SAMN36383028-rid18765223.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQHB010000026.1 Salmonella enterica strain PNUSAS361861 SAMN36383028-rid18765223.guided.18, whole genome shotgun sequence	964..1401	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQHB010000015.1 Salmonella enterica strain PNUSAS361861 SAMN36383028-rid18765223.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNQHB010000015.1 Salmonella enterica strain PNUSAS361861 SAMN36383028-rid18765223.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNQHB010000002.1	553060..553929	99.54	870	0						
GCA_032563535.1_PDT001813975.1_genomic.fna	Salmonella_enterica	0.5149	319.182 KB	5	aroC_88,dnaN_26,hemD_339,hisD_55,purE_21,sucA_425,thrA_28	1854	61:c:1,5,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_339	hisD	100	100	hisD_55	purE	100	100	purE_21	sucA	100	100	sucA_425	thrA	100	100	thrA_28	61	c	1,5,7	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:c:1,5,(7)		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNQHA010000007.1 Salmonella enterica strain PNUSAS361862 SAMN36383036-rid18765233.denovo.07, whole genome shotgun sequence	123531..123968	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNQHA010000038.1 Salmonella enterica strain PNUSAS361862 SAMN36383036-rid18765233.guided.20, whole genome shotgun sequence	24019..24456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQHA010000001.1	165462..166331	96.437	870	0						
GCA_032563555.1_PDT001813973.1_genomic.fna	Salmonella_enterica	0.5215	478.496 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQHC010000001.1 Salmonella enterica strain PNUSAS361884 SAMN36383029-rid18765213.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQHC010000026.1 Salmonella enterica strain PNUSAS361884 SAMN36383029-rid18765213.guided.21, whole genome shotgun sequence	3552..3989	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQHC010000015.1 Salmonella enterica strain PNUSAS361884 SAMN36383029-rid18765213.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNQHC010000015.1 Salmonella enterica strain PNUSAS361884 SAMN36383029-rid18765213.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNQHC010000002.1	553083..553952	99.54	870	0						
GCA_032563595.1_PDT001813972.1_genomic.fna	Salmonella_enterica	0.5223	489.349 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQHD010000002.1 Salmonella enterica strain PNUSAS361873 SAMN36383043-rid18765203.denovo.02, whole genome shotgun sequence	145317..145754	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNQHD010000032.1 Salmonella enterica strain PNUSAS361873 SAMN36383043-rid18765203.guided.21, whole genome shotgun sequence	18164..18601	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNQHD010000005.1	400940..401809	99.655	870	0						
GCA_032563605.1_PDT001813971.1_genomic.fna	Salmonella_enterica	0.5225	306.218 KB	7	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNQHE010000013.1 Salmonella enterica strain PNUSAS361886 SAMN36383035-rid18765193.denovo.13, whole genome shotgun sequence	70822..71259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNQHE010000038.1 Salmonella enterica strain PNUSAS361886 SAMN36383035-rid18765193.guided.33, whole genome shotgun sequence	1466..1903	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQHE010000006.1	94228..95097	98.966	870	0						
GCA_032563715.1_PDT001813969.1_genomic.fna	Salmonella_enterica	0.5213	421.394 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQHH010000001.1 Salmonella enterica strain PNUSAS361864 SAMN36383045-rid18765173.denovo.01, whole genome shotgun sequence	293268..293705	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQHH010000028.1 Salmonella enterica strain PNUSAS361864 SAMN36383045-rid18765173.guided.19, whole genome shotgun sequence	4316..4753	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNQHH010000022.1 Salmonella enterica strain PNUSAS361864 SAMN36383045-rid18765173.denovo.25, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQHH010000016.1 Salmonella enterica strain PNUSAS361864 SAMN36383045-rid18765173.denovo.16, whole genome shotgun sequence	49285..49927		enterobacteriales	IncFII(S)	100	262 / 262	ABNQHH010000016.1 Salmonella enterica strain PNUSAS361864 SAMN36383045-rid18765173.denovo.16, whole genome shotgun sequence	5032..5293																																									avrA	ABNQHH010000002.1	553088..553957	99.54	870	0						
GCA_032563725.1_PDT001813970.1_genomic.fna	Salmonella_enterica	0.522	332.885 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQHF010000001.1 Salmonella enterica strain PNUSAS361877 SAMN36383031-rid18765183.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQHF010000042.1 Salmonella enterica strain PNUSAS361877 SAMN36383031-rid18765183.guided.30, whole genome shotgun sequence	10103..10540	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQHF010000002.1	433438..434307	99.655	870	0						
GCA_032563795.1_PDT001813968.1_genomic.fna	Salmonella_enterica	0.5224	440.892 KB	3	aroC_157,dnaN_142,hemD_49,hisD_16,purE_40,sucA_35,thrA_3	505	4:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_157	dnaN	100	100	dnaN_142	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_3	4	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Bredeney		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNQHG010000001.1 Salmonella enterica strain PNUSAS361872 SAMN36383042-rid18765163.denovo.01, whole genome shotgun sequence	933430..933867	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNQHG010000022.1 Salmonella enterica strain PNUSAS361872 SAMN36383042-rid18765163.guided.17, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032563935.1_PDT001813957.1_genomic.fna	Salmonella_enterica	0.5221	196.342 KB	8	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNQHL010000011.1 Salmonella enterica strain PNUSAS361780 SAMN36382151-rid18765053.denovo.11, whole genome shotgun sequence	70812..71249	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNQHL010000049.1 Salmonella enterica strain PNUSAS361780 SAMN36382151-rid18765053.guided.28, whole genome shotgun sequence	7469..7906	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQHL010000006.1	95239..96108	98.966	870	0						
GCA_032564115.1_PDT001813950.1_genomic.fna	Salmonella_enterica	0.5214	155.571 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQHR010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323283 SAMN36382118-rid18764983.denovo.01, whole genome shotgun sequence	477908..478345	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQHR010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323283 SAMN36382118-rid18764983.denovo.36, whole genome shotgun sequence	1056..1847	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQHR010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323283 SAMN36382118-rid18764983.denovo.36, whole genome shotgun sequence	1056..1847	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNQHR010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323283 SAMN36382118-rid18764983.guided.31, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQHR010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323283 SAMN36382118-rid18764983.guided.37, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQHR010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323283 SAMN36382118-rid18764983.guided.37, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNQHR010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323283 SAMN36382118-rid18764983.denovo.55, whole genome shotgun sequence	901..1776	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNQHR010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323283 SAMN36382118-rid18764983.guided.54, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNQHR010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323283 SAMN36382118-rid18764983.denovo.57, whole genome shotgun sequence	320..736	Fosfomycin	AB522970	fosA3	100	417/417	ABNQHR010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323283 SAMN36382118-rid18764983.guided.65, whole genome shotgun sequence	361..777	Fosfomycin	AB522970	sul1	100	840/840	ABNQHR010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323283 SAMN36382118-rid18764983.denovo.36, whole genome shotgun sequence	2352..3191	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQHR010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323283 SAMN36382118-rid18764983.guided.37, whole genome shotgun sequence	2393..3232	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQHR010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323283 SAMN36382118-rid18764983.denovo.36, whole genome shotgun sequence	15708..16907	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQHR010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323283 SAMN36382118-rid18764983.guided.37, whole genome shotgun sequence	15749..16948	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQHR010000029.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323283 SAMN36382118-rid18764983.denovo.30, whole genome shotgun sequence	37065..37624																																																						avrA	ABNQHR010000003.1	149843..150712	99.655	870	0						
GCA_032564155.1_PDT001813951.1_genomic.fna	Salmonella_enterica	0.5205	184.855 KB	9	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNQHP010000006.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323285 SAMN36382152-rid18764993.denovo.06, whole genome shotgun sequence	52437..52874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQHP010000041.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323285 SAMN36382152-rid18764993.denovo.45, whole genome shotgun sequence	5947..6783	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNQHP010000041.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323285 SAMN36382152-rid18764993.denovo.45, whole genome shotgun sequence	4916..5729	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	V00359	aph(3'')-Ib	100	804/804	ABNQHP010000041.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323285 SAMN36382152-rid18764993.denovo.45, whole genome shotgun sequence	6783..7586	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNQHP010000060.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323285 SAMN36382152-rid18764993.guided.15, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQHP010000064.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323285 SAMN36382152-rid18764993.guided.46, whole genome shotgun sequence	4573..5409	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNQHP010000064.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323285 SAMN36382152-rid18764993.guided.46, whole genome shotgun sequence	5627..6440	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	V00359	aph(3'')-Ib	100	804/804	ABNQHP010000064.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323285 SAMN36382152-rid18764993.guided.46, whole genome shotgun sequence	3770..4573	Streptomycin	AF321551	sul2	99.88	816/816	ABNQHP010000003.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323285 SAMN36382152-rid18764993.denovo.03, whole genome shotgun sequence	346212..347027	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNQHP010000063.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323285 SAMN36382152-rid18764993.guided.41, whole genome shotgun sequence	12299..13114	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNQHP010000045.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323285 SAMN36382152-rid18764993.denovo.50, whole genome shotgun sequence	1194..2399	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNQHP010000065.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323285 SAMN36382152-rid18764993.guided.52, whole genome shotgun sequence	2022..3227	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQHP010000015.1	102583..103451	99.655	869	0						
GCA_032564255.1_PDT001813948.1_genomic.fna	Salmonella_enterica	0.5204	284.136 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	4	ColpVC,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQHS010000001.1 Salmonella enterica strain PNUSAS361783 SAMN36382149-rid18764963.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQHS010000036.1 Salmonella enterica strain PNUSAS361783 SAMN36382149-rid18764963.guided.17, whole genome shotgun sequence	15478..15915	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNQHS010000030.1 Salmonella enterica strain PNUSAS361783 SAMN36382149-rid18764963.denovo.33, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQHS010000021.1 Salmonella enterica strain PNUSAS361783 SAMN36382149-rid18764963.denovo.23, whole genome shotgun sequence	6835..7477		enterobacteriales	IncFII(S)	100	262 / 262	ABNQHS010000025.1 Salmonella enterica strain PNUSAS361783 SAMN36382149-rid18764963.denovo.28, whole genome shotgun sequence	3197..3458		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNQHS010000017.1 Salmonella enterica strain PNUSAS361783 SAMN36382149-rid18764963.denovo.18, whole genome shotgun sequence	8635..8776																																		avrA	ABNQHS010000002.1	553032..553901	99.54	870	0						
GCA_032564265.1_PDT001813949.1_genomic.fna	Salmonella_enterica	0.5205	406.268 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQHQ010000001.1 Salmonella enterica strain PNUSAS361782 SAMN36382154-rid18764973.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQHQ010000026.1 Salmonella enterica strain PNUSAS361782 SAMN36382154-rid18764973.guided.21, whole genome shotgun sequence	6219..6656	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQHQ010000020.1 Salmonella enterica strain PNUSAS361782 SAMN36382154-rid18764973.denovo.22, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNQHQ010000021.1 Salmonella enterica strain PNUSAS361782 SAMN36382154-rid18764973.denovo.24, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.93	374 / 374	ABNQHQ010000017.1 Salmonella enterica strain PNUSAS361782 SAMN36382154-rid18764973.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABNQHQ010000013.1	39351..40220	99.54	870	0						
GCA_032564295.1_PDT001813939.1_genomic.fna	Salmonella_enterica	0.5209	108.773 KB	16	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQHT010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.denovo.001, whole genome shotgun sequence	232585..233022	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQHT010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.denovo.057, whole genome shotgun sequence	18739..19530	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQHT010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.denovo.057, whole genome shotgun sequence	18739..19530	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQHT010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.denovo.090, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQHT010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.denovo.090, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNQHT010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.guided.042, whole genome shotgun sequence	14165..14602	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQHT010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.guided.076, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQHT010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.guided.076, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQHT010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.guided.089, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQHT010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.guided.089, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNQHT010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.denovo.083, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNQHT010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.guided.087, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNQHT010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.denovo.057, whole genome shotgun sequence	17395..18234	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQHT010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.guided.076, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQHT010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.denovo.057, whole genome shotgun sequence	3679..4878	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQHT010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.guided.070, whole genome shotgun sequence	7924..9123	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQHT010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.denovo.064, whole genome shotgun sequence	14638..15197	enterobacteriales	IncX1	98.93	374 / 374	ABNQHT010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323284 SAMN36382121-rid18764873.denovo.100, whole genome shotgun sequence	1227..1600																																																avrA	ABNQHT010000011.1	124255..125124	99.655	870	0						
GCA_032564335.1_PDT001813937.1_genomic.fna	Salmonella_enterica	0.5214	415.884 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQHU010000001.1 Salmonella enterica strain PNUSAS361762 SAMN36381935-rid18764853.denovo.01, whole genome shotgun sequence	565755..566192	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQHU010000060.1 Salmonella enterica strain PNUSAS361762 SAMN36381935-rid18764853.guided.33, whole genome shotgun sequence	6932..7369	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNQHU010000028.1 Salmonella enterica strain PNUSAS361762 SAMN36381935-rid18764853.denovo.28, whole genome shotgun sequence	12237..12879																																																						avrA	ABNQHU010000006.1	97545..98414	99.425	870	0						
GCA_032564375.1_PDT001813935.1_genomic.fna	Salmonella_enterica	0.522	194.962 KB	10	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQHW010000002.1 Salmonella enterica strain PNUSAS361764 SAMN36381937-rid18764833.denovo.02, whole genome shotgun sequence	144280..144717	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQHW010000056.1 Salmonella enterica strain PNUSAS361764 SAMN36381937-rid18764833.guided.39, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032564455.1_PDT001813934.1_genomic.fna	Salmonella_enterica	0.5216	225.553 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQHX010000001.1 Salmonella enterica strain PNUSAS361760 SAMN36381924-rid18764823.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQHX010000043.1 Salmonella enterica strain PNUSAS361760 SAMN36381924-rid18764823.guided.38, whole genome shotgun sequence	1531..1968	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNQHX010000025.1 Salmonella enterica strain PNUSAS361760 SAMN36381924-rid18764823.denovo.25, whole genome shotgun sequence	44718..45360	enterobacteriales	IncFII(S)	100	262 / 262	ABNQHX010000025.1 Salmonella enterica strain PNUSAS361760 SAMN36381924-rid18764823.denovo.25, whole genome shotgun sequence	29372..29633																																																avrA	ABNQHX010000004.1	174651..175519	100	869	0						
GCA_032564475.1_PDT001813936.1_genomic.fna	Salmonella_enterica	0.5226	397.629 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),ColpVC	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQHV010000001.1 Salmonella enterica strain PNUSAS361770 SAMN36381929-rid18764843.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNQHV010000028.1 Salmonella enterica strain PNUSAS361770 SAMN36381929-rid18764843.guided.19, whole genome shotgun sequence	10942..11379	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNQHV010000018.1 Salmonella enterica strain PNUSAS361770 SAMN36381929-rid18764843.denovo.21, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNQHV010000030.1 Salmonella enterica strain PNUSAS361770 SAMN36381929-rid18764843.guided.28, whole genome shotgun sequence	93..737	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNQHV010000018.1 Salmonella enterica strain PNUSAS361770 SAMN36381929-rid18764843.denovo.21, whole genome shotgun sequence	1519..1649	enterobacteriales	ColpVC	98.96	193 / 193	ABNQHV010000022.1 Salmonella enterica strain PNUSAS361770 SAMN36381929-rid18764843.denovo.25, whole genome shotgun sequence	805..997																																																avrA	ABNQHV010000006.1	129887..130756	98.966	870	0						
GCA_032564495.1_PDT001813933.1_genomic.fna	Salmonella_enterica	0.5211	409.861 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQHZ010000001.1 Salmonella enterica strain PNUSAS361765 SAMN36381931-rid18764813.denovo.01, whole genome shotgun sequence	384606..385043	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQHZ010000042.1 Salmonella enterica strain PNUSAS361765 SAMN36381931-rid18764813.guided.21, whole genome shotgun sequence	9934..10371	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQHZ010000004.1	150788..151658	99.196	871	0						
GCA_032564515.1_PDT001813930.1_genomic.fna	Salmonella_enterica	0.521	488.174 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQIB010000001.1 Salmonella enterica strain PNUSAS361763 SAMN36381921-rid18764783.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQIB010000046.1 Salmonella enterica strain PNUSAS361763 SAMN36381921-rid18764783.guided.24, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQIB010000003.1	504146..505016	99.196	871	0						
GCA_032564575.1_PDT001813932.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQHY010000001.1 Salmonella enterica strain PNUSAS361769 SAMN36381916-rid18764803.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQHY010000024.1 Salmonella enterica strain PNUSAS361769 SAMN36381916-rid18764803.guided.13, whole genome shotgun sequence	20663..21100	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNQHY010000020.1 Salmonella enterica strain PNUSAS361769 SAMN36381916-rid18764803.denovo.23, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQHY010000016.1 Salmonella enterica strain PNUSAS361769 SAMN36381916-rid18764803.denovo.18, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABNQHY010000018.1 Salmonella enterica strain PNUSAS361769 SAMN36381916-rid18764803.denovo.21, whole genome shotgun sequence	3403..3664																																									avrA	ABNQHY010000002.1	553636..554505	99.54	870	0						
GCA_032564615.1_PDT001813929.1_genomic.fna	Salmonella_enterica	0.521	695.276 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNQIA010000001.1 Salmonella enterica strain PNUSAS361766 SAMN36381912-rid18764773.denovo.01, whole genome shotgun sequence	510328..510765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNQIA010000020.1 Salmonella enterica strain PNUSAS361766 SAMN36381912-rid18764773.guided.12, whole genome shotgun sequence	20566..21003	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQIA010000003.1	545206..546074	99.425	870	0						
GCA_032564695.1_PDT001813931.1_genomic.fna	Salmonella_enterica	0.5228	600.125 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQIC010000001.1 Salmonella enterica strain PNUSAS361771 SAMN36381926-rid18764793.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQIC010000040.1 Salmonella enterica strain PNUSAS361771 SAMN36381926-rid18764793.guided.26, whole genome shotgun sequence	6026..6463	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNQIC010000021.1 Salmonella enterica strain PNUSAS361771 SAMN36381926-rid18764793.denovo.21, whole genome shotgun sequence	11438..12080																																																																	
GCA_032565735.1_PDT001813928.1_genomic.fna	Salmonella_enterica	0.5214	375.778 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQIF010000001.1 Salmonella enterica strain PNUSAS361767 SAMN36381919-rid18764763.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQIF010000029.1 Salmonella enterica strain PNUSAS361767 SAMN36381919-rid18764763.guided.19, whole genome shotgun sequence	5207..5644	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNQIF010000024.1 Salmonella enterica strain PNUSAS361767 SAMN36381919-rid18764763.denovo.27, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQIF010000019.1 Salmonella enterica strain PNUSAS361767 SAMN36381919-rid18764763.denovo.20, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABNQIF010000020.1 Salmonella enterica strain PNUSAS361767 SAMN36381919-rid18764763.denovo.22, whole genome shotgun sequence	3392..3653																																									avrA	ABNQIF010000002.1	553628..554497	99.54	870	0						
GCA_032566235.1_PDT001813911.1_genomic.fna	Salmonella_enterica	0.523	320.133 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQIU010000001.1 Salmonella enterica strain PNUSAS361721 SAMN36381828-rid18763853.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQIU010000038.1 Salmonella enterica strain PNUSAS361721 SAMN36381828-rid18763853.guided.26, whole genome shotgun sequence	3657..4094	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQIU010000005.1	149828..150697	99.655	870	0						
GCA_032566245.1_PDT001813912.1_genomic.fna	Salmonella_enterica	0.5213	405.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQIT010000001.1 Salmonella enterica strain PNUSAS361723 SAMN36381827-rid18764603.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQIT010000027.1 Salmonella enterica strain PNUSAS361723 SAMN36381827-rid18764603.guided.18, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQIT010000017.1 Salmonella enterica strain PNUSAS361723 SAMN36381827-rid18764603.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNQIT010000019.1 Salmonella enterica strain PNUSAS361723 SAMN36381827-rid18764603.denovo.22, whole genome shotgun sequence	3412..3673																																																avrA	ABNQIT010000002.1	553636..554505	99.54	870	0						
GCA_032566275.1_PDT001813910.1_genomic.fna	Salmonella_enterica	0.521	318.941 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQIV010000001.1 Salmonella enterica strain PNUSAS361726 SAMN36381824-rid18764593.denovo.01, whole genome shotgun sequence	581162..581599	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQIV010000030.1 Salmonella enterica strain PNUSAS361726 SAMN36381824-rid18764593.denovo.34, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNQIV010000030.1 Salmonella enterica strain PNUSAS361726 SAMN36381824-rid18764593.denovo.34, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNQIV010000044.1 Salmonella enterica strain PNUSAS361726 SAMN36381824-rid18764593.guided.26, whole genome shotgun sequence	6695..7132	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQIV010000046.1 Salmonella enterica strain PNUSAS361726 SAMN36381824-rid18764593.guided.35, whole genome shotgun sequence	3437..4273	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNQIV010000046.1 Salmonella enterica strain PNUSAS361726 SAMN36381824-rid18764593.guided.35, whole genome shotgun sequence	2634..3437	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNQIV010000034.1 Salmonella enterica strain PNUSAS361726 SAMN36381824-rid18764593.denovo.40, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNQIV010000047.1 Salmonella enterica strain PNUSAS361726 SAMN36381824-rid18764593.guided.39, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNQIV010000030.1 Salmonella enterica strain PNUSAS361726 SAMN36381824-rid18764593.denovo.34, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNQIV010000046.1 Salmonella enterica strain PNUSAS361726 SAMN36381824-rid18764593.guided.35, whole genome shotgun sequence	1758..2573	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNQIV010000025.1 Salmonella enterica strain PNUSAS361726 SAMN36381824-rid18764593.denovo.28, whole genome shotgun sequence	4429..5634	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNQIV010000045.1 Salmonella enterica strain PNUSAS361726 SAMN36381824-rid18764593.guided.29, whole genome shotgun sequence	4470..5675	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col156	94.81	154 / 154	ABNQIV010000031.1 Salmonella enterica strain PNUSAS361726 SAMN36381824-rid18764593.denovo.36, whole genome shotgun sequence	792..945																																																						avrA	ABNQIV010000002.1	539709..540578	99.885	870	0						
GCA_032566325.1_PDT001813909.1_genomic.fna	Salmonella_enterica	0.5213	262.715 KB	6	aroC_10,dnaN_19,hemD_363,hisD_9,purE_5,sucA_9,thrA_2	2379	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_363	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQIW010000001.1 Salmonella enterica strain 23WA06GT04-01 SAMN36381818-rid18764583.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQIW010000037.1 Salmonella enterica strain 23WA06GT04-01 SAMN36381818-rid18764583.denovo.42, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNQIW010000037.1 Salmonella enterica strain 23WA06GT04-01 SAMN36381818-rid18764583.denovo.42, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNQIW010000048.1 Salmonella enterica strain 23WA06GT04-01 SAMN36381818-rid18764583.guided.28, whole genome shotgun sequence	19612..20049	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQIW010000052.1 Salmonella enterica strain 23WA06GT04-01 SAMN36381818-rid18764583.guided.41, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNQIW010000052.1 Salmonella enterica strain 23WA06GT04-01 SAMN36381818-rid18764583.guided.41, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNQIW010000039.1 Salmonella enterica strain 23WA06GT04-01 SAMN36381818-rid18764583.denovo.45, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNQIW010000053.1 Salmonella enterica strain 23WA06GT04-01 SAMN36381818-rid18764583.guided.44, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNQIW010000037.1 Salmonella enterica strain 23WA06GT04-01 SAMN36381818-rid18764583.denovo.42, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNQIW010000052.1 Salmonella enterica strain 23WA06GT04-01 SAMN36381818-rid18764583.guided.41, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNQIW010000032.1 Salmonella enterica strain 23WA06GT04-01 SAMN36381818-rid18764583.denovo.35, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNQIW010000050.1 Salmonella enterica strain 23WA06GT04-01 SAMN36381818-rid18764583.guided.34, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNQIW010000002.1	621494..622363	99.885	870	0						
GCA_032566395.1_PDT001813907.1_genomic.fna	Salmonella_enterica	0.522	614.9 KB	3	aroC_81,dnaN_283,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	909	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_283	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQIY010000001.1 Salmonella enterica strain PNUSAS361729 SAMN36381821-rid18764563.denovo.01, whole genome shotgun sequence	409242..409679	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQIY010000026.1 Salmonella enterica strain PNUSAS361729 SAMN36381821-rid18764563.guided.17, whole genome shotgun sequence	11348..11785	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQIY010000002.1	606239..607108	99.31	870	0						
GCA_032566435.1_PDT001813908.1_genomic.fna	Salmonella_enterica	0.5199	410.411 KB	4	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	4	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,qnrS13,qnrS13,tet(A),tet(A)	0		3	IncI1-I(Alpha),IncI2,IncX4	aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQIX010000001.1 Salmonella enterica strain PNUSAS361727 SAMN36381787-rid18764573.denovo.01, whole genome shotgun sequence	528309..528746	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNQIX010000012.1 Salmonella enterica strain PNUSAS361727 SAMN36381787-rid18764573.denovo.12, whole genome shotgun sequence	86433..87248	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	V00359	aac(6')-Iaa	99.54	438/438	ABNQIX010000028.1 Salmonella enterica strain PNUSAS361727 SAMN36381787-rid18764573.guided.21, whole genome shotgun sequence	2213..2650	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNQIX010000030.1 Salmonella enterica strain PNUSAS361727 SAMN36381787-rid18764573.guided.23, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	V00359	qnrS13	100	657/657	ABNQIX010000012.1 Salmonella enterica strain PNUSAS361727 SAMN36381787-rid18764573.denovo.12, whole genome shotgun sequence	83805..84461	Ciprofloxacin	LUYD01000008	qnrS13	100	657/657	ABNQIX010000026.1 Salmonella enterica strain PNUSAS361727 SAMN36381787-rid18764573.guided.18, whole genome shotgun sequence	1054..1710	Ciprofloxacin	LUYD01000008	tet(A)	99.92	1200/1200	ABNQIX010000012.1 Salmonella enterica strain PNUSAS361727 SAMN36381787-rid18764573.denovo.12, whole genome shotgun sequence	77951..79150	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNQIX010000026.1 Salmonella enterica strain PNUSAS361727 SAMN36381787-rid18764573.guided.18, whole genome shotgun sequence	6365..7564	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNQIX010000012.1 Salmonella enterica strain PNUSAS361727 SAMN36381787-rid18764573.denovo.12, whole genome shotgun sequence	93145..93286	enterobacteriales	IncI2	99.69	324 / 324	ABNQIX010000016.1 Salmonella enterica strain PNUSAS361727 SAMN36381787-rid18764573.denovo.16, whole genome shotgun sequence	24636..24959		enterobacteriales	IncX4	98.74	712 / 712	ABNQIX010000018.1 Salmonella enterica strain PNUSAS361727 SAMN36381787-rid18764573.denovo.19, whole genome shotgun sequence	28713..29424																																									avrA	ABNQIX010000004.1	151157..152026	99.77	870	0						
GCA_032566455.1_PDT001813905.1_genomic.fna	Salmonella_enterica	0.5211	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQJA010000001.1 Salmonella enterica strain PNUSAS361725 SAMN36381822-rid18764553.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQJA010000027.1 Salmonella enterica strain PNUSAS361725 SAMN36381822-rid18764553.guided.20, whole genome shotgun sequence	2339..2776	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQJA010000013.1 Salmonella enterica strain PNUSAS361725 SAMN36381822-rid18764553.denovo.14, whole genome shotgun sequence	40534..41176	enterobacteriales	IncFII(S)	100	262 / 262	ABNQJA010000017.1 Salmonella enterica strain PNUSAS361725 SAMN36381822-rid18764553.denovo.19, whole genome shotgun sequence	3395..3656																																																avrA	ABNQJA010000002.1	552776..553645	99.54	870	0						
GCA_032566495.1_PDT001813904.1_genomic.fna	Salmonella_enterica	0.5214	284.227 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pHCM2)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQJB010000001.1 Salmonella enterica strain PNUSAS361734 SAMN36381830-rid18763833.denovo.01, whole genome shotgun sequence	50843..51280	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNQJB010000047.1 Salmonella enterica strain PNUSAS361734 SAMN36381830-rid18763833.guided.30, whole genome shotgun sequence	12742..13179	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	98.63	875 / 875	ABNQJB010000015.1 Salmonella enterica strain PNUSAS361734 SAMN36381830-rid18763833.denovo.15, whole genome shotgun sequence	12149..13023																																																						avrA	ABNQJB010000002.1	94005..94874	98.966	870	0						
GCA_032566515.1_PDT001813906.1_genomic.fna	Salmonella_enterica	0.5209	406.407 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQIZ010000001.1 Salmonella enterica strain PNUSAS361720 SAMN36381825-rid18763843.denovo.01, whole genome shotgun sequence	898870..899307	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQIZ010000024.1 Salmonella enterica strain PNUSAS361720 SAMN36381825-rid18763843.guided.14, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQIZ010000016.1 Salmonella enterica strain PNUSAS361720 SAMN36381825-rid18763843.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNQIZ010000017.1 Salmonella enterica strain PNUSAS361720 SAMN36381825-rid18763843.denovo.20, whole genome shotgun sequence	3423..3684																																																avrA	ABNQIZ010000002.1	553187..554056	99.54	870	0						
GCA_032566595.1_PDT001813903.1_genomic.fna	Salmonella_enterica	0.5222	541.481 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNQJC010000001.1 Salmonella enterica strain PNUSAS361728 SAMN36381820-rid18764543.denovo.01, whole genome shotgun sequence	683864..684301	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNQJC010000024.1 Salmonella enterica strain PNUSAS361728 SAMN36381820-rid18764543.guided.16, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQJC010000002.1	563792..564661	99.77	870	0						
GCA_032566615.1_PDT001813902.1_genomic.fna	Salmonella_enterica	0.521	341.897 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col8282,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQJD010000003.1 Salmonella enterica strain PNUSAS361724 SAMN36381786-rid18764533.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQJD010000051.1 Salmonella enterica strain PNUSAS361724 SAMN36381786-rid18764533.guided.30, whole genome shotgun sequence	20578..21015	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col8282	100	207 / 207	ABNQJD010000035.1 Salmonella enterica strain PNUSAS361724 SAMN36381786-rid18764533.denovo.38, whole genome shotgun sequence	1107..1313	enterobacteriales	IncFIB(S)	100	643 / 643	ABNQJD010000021.1 Salmonella enterica strain PNUSAS361724 SAMN36381786-rid18764533.denovo.21, whole genome shotgun sequence	44717..45359		enterobacteriales	IncFII(S)	100	262 / 262	ABNQJD010000021.1 Salmonella enterica strain PNUSAS361724 SAMN36381786-rid18764533.denovo.21, whole genome shotgun sequence	29371..29632		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNQJD010000028.1 Salmonella enterica strain PNUSAS361724 SAMN36381786-rid18764533.denovo.28, whole genome shotgun sequence	19217..19358																																		avrA	ABNQJD010000001.1	446320..447188	100	869	0						
GCA_032567635.1_PDT001813885.1_genomic.fna	Salmonella_enterica	0.5205	496.658 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNQJX010000001.1 Salmonella enterica strain PNUSAS361699 SAMN36381645-rid18764403.denovo.01, whole genome shotgun sequence	741048..741485	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNQJX010000029.1 Salmonella enterica strain PNUSAS361699 SAMN36381645-rid18764403.guided.17, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQJX010000003.1	150557..151426	98.966	870	0						
GCA_032568055.1_PDT001813878.1_genomic.fna	Salmonella_enterica	0.5216	430.195 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQKC010000001.1 Salmonella enterica strain PNUSAS361696 SAMN36381642-rid18764353.denovo.01, whole genome shotgun sequence	1329479..1329916	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQKC010000027.1 Salmonella enterica strain PNUSAS361696 SAMN36381642-rid18764353.guided.17, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQKC010000009.1	140203..141071	99.195	870	0						
GCA_032568085.1_PDT001813876.1_genomic.fna	Salmonella_enterica	0.5217	525.831 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQKF010000001.1 Salmonella enterica strain PNUSAS361695 SAMN36381641-rid18764333.denovo.01, whole genome shotgun sequence	825221..825658	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQKF010000022.1 Salmonella enterica strain PNUSAS361695 SAMN36381641-rid18764333.guided.17, whole genome shotgun sequence	5535..5972	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQKF010000003.1	407443..408311	99.31	870	0						
GCA_032568415.1_PDT001813871.1_genomic.fna	Salmonella_enterica	0.5224	728.984 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQKJ010000001.1 Salmonella enterica strain PNUSAS361701 SAMN36381647-rid18764293.denovo.01, whole genome shotgun sequence	640511..640948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNQKJ010000017.1 Salmonella enterica strain PNUSAS361701 SAMN36381647-rid18764293.guided.13, whole genome shotgun sequence	2423..2860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNQKJ010000003.1	553979..554848	99.77	870	0						
GCA_032568675.1_PDT001813860.1_genomic.fna	Salmonella_enterica	0.5202	144.048 KB	11	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNQKU010000012.1 Salmonella enterica strain PNUSAS361698 SAMN36381644-rid18764203.denovo.12, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNQKU010000076.1 Salmonella enterica strain PNUSAS361698 SAMN36381644-rid18764203.guided.49, whole genome shotgun sequence	7510..7944	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	97.86	374 / 374	ABNQKU010000053.1 Salmonella enterica strain PNUSAS361698 SAMN36381644-rid18764203.denovo.56, whole genome shotgun sequence	6131..6504																																																																	
GCA_032568755.1_PDT001813845.1_genomic.fna	Salmonella_enterica	0.5222	397.266 KB	4	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pMET)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNQKX010000001.1 Salmonella enterica strain PNUSAS361704 SAMN36381555-rid18764083.denovo.01, whole genome shotgun sequence	790670..791107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNQKX010000046.1 Salmonella enterica strain PNUSAS361704 SAMN36381555-rid18764083.guided.23, whole genome shotgun sequence	42403..42840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pMET)	98.27	577 / 577	ABNQKX010000025.1 Salmonella enterica strain PNUSAS361704 SAMN36381555-rid18764083.denovo.26, whole genome shotgun sequence	28348..28924																																																						avrA	ABNQKX010000002.1	140108..140977	99.54	870	0						
GCA_032568815.1_PDT001813844.1_genomic.fna	Salmonella_enterica	0.5226	204.881 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQKY010000001.1 Salmonella enterica strain PNUSAS361706 SAMN36381557-rid18763703.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQKY010000055.1 Salmonella enterica strain PNUSAS361706 SAMN36381557-rid18763703.guided.30, whole genome shotgun sequence	18163..18600	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQKY010000002.1	95321..96190	99.655	870	0						
GCA_032568855.1_PDT001813851.1_genomic.fna	Salmonella_enterica	0.523	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQKV010000001.1 Salmonella enterica strain PNUSAS361694 SAMN36381558-rid18764133.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQKV010000031.1 Salmonella enterica strain PNUSAS361694 SAMN36381558-rid18764133.guided.23, whole genome shotgun sequence	2851..3288	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQKV010000002.1	178934..179803	99.655	870	0						
GCA_032568875.1_PDT001813847.1_genomic.fna	Salmonella_enterica	0.5213	247.532 KB	7	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQKW010000001.1 Salmonella enterica strain PNUSAS361702 SAMN36381553-rid18764103.denovo.01, whole genome shotgun sequence	112533..112970	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQKW010000046.1 Salmonella enterica strain PNUSAS361702 SAMN36381553-rid18764103.guided.24, whole genome shotgun sequence	8017..8454	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032568905.1_PDT001813843.1_genomic.fna	Salmonella_enterica	0.521	412.221 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQKZ010000001.1 Salmonella enterica strain PNUSAS361703 SAMN36381554-rid18764073.denovo.01, whole genome shotgun sequence	810640..811077	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQKZ010000029.1 Salmonella enterica strain PNUSAS361703 SAMN36381554-rid18764073.guided.18, whole genome shotgun sequence	40082..40519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQKZ010000015.1 Salmonella enterica strain PNUSAS361703 SAMN36381554-rid18764073.denovo.15, whole genome shotgun sequence	10040..10682	enterobacteriales	IncFII(S)	100	262 / 262	ABNQKZ010000015.1 Salmonella enterica strain PNUSAS361703 SAMN36381554-rid18764073.denovo.15, whole genome shotgun sequence	54674..54935																																																avrA	ABNQKZ010000002.1	124153..125022	99.54	870	0						
GCA_032569975.1_PDT001793691.2_genomic.fna	Salmonella_enterica	0.5212	269.782 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,floR,floR,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQLT010000001.1 Salmonella enterica strain FDA1227339-C001-001 SAMN36073254-rid18778023.denovo.01, whole genome shotgun sequence	583111..583548	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQLT010000053.1 Salmonella enterica strain FDA1227339-C001-001 SAMN36073254-rid18778023.guided.23, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNQLT010000033.1 Salmonella enterica strain FDA1227339-C001-001 SAMN36073254-rid18778023.denovo.38, whole genome shotgun sequence	147..1007	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNQLT010000057.1 Salmonella enterica strain FDA1227339-C001-001 SAMN36073254-rid18778023.guided.37, whole genome shotgun sequence	1608..2468	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNQLT010000027.1 Salmonella enterica strain FDA1227339-C001-001 SAMN36073254-rid18778023.denovo.30, whole genome shotgun sequence	2938..4151	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNQLT010000056.1 Salmonella enterica strain FDA1227339-C001-001 SAMN36073254-rid18778023.guided.35, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	tet(A)	100	1275/1275	ABNQLT010000027.1 Salmonella enterica strain FDA1227339-C001-001 SAMN36073254-rid18778023.denovo.30, whole genome shotgun sequence	1063..2337	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNQLT010000058.1 Salmonella enterica strain FDA1227339-C001-001 SAMN36073254-rid18778023.guided.39, whole genome shotgun sequence	1104..2378	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQLT010000002.1	149886..150755	99.77	870	0						
GCA_032570035.1_PDT001813812.1_genomic.fna	Salmonella_enterica	0.5209	257.839 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQLV010000002.1 Salmonella enterica strain PNUSAS361651 SAMN36381044-rid18763603.denovo.02, whole genome shotgun sequence	68382..68819	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQLV010000047.1 Salmonella enterica strain PNUSAS361651 SAMN36381044-rid18763603.guided.25, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNQLV010000017.1 Salmonella enterica strain PNUSAS361651 SAMN36381044-rid18763603.denovo.17, whole genome shotgun sequence	65980..67125	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNQLV010000050.1 Salmonella enterica strain PNUSAS361651 SAMN36381044-rid18763603.guided.37, whole genome shotgun sequence	282..1427	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	100	643 / 643	ABNQLV010000032.1 Salmonella enterica strain PNUSAS361651 SAMN36381044-rid18763603.denovo.34, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABNQLV010000026.1 Salmonella enterica strain PNUSAS361651 SAMN36381044-rid18763603.denovo.27, whole genome shotgun sequence	23766..24027		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNQLV010000017.1 Salmonella enterica strain PNUSAS361651 SAMN36381044-rid18763603.denovo.17, whole genome shotgun sequence	81869..82010																																									avrA	ABNQLV010000001.1	446157..447025	100	869	0						
GCA_032570115.1_PDT001813810.1_genomic.fna	Salmonella_enterica	0.521	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQLX010000001.1 Salmonella enterica strain PNUSAS361650 SAMN36381047-rid18763583.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQLX010000024.1 Salmonella enterica strain PNUSAS361650 SAMN36381047-rid18763583.guided.12, whole genome shotgun sequence	30309..30746	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	262 / 262	ABNQLX010000017.1 Salmonella enterica strain PNUSAS361650 SAMN36381047-rid18763583.denovo.20, whole genome shotgun sequence	1834..2095																																																						avrA	ABNQLX010000002.1	553560..554429	99.54	870	0						
GCA_032570135.1_PDT001813811.1_genomic.fna	Salmonella_enterica	0.5235	413.188 KB	4	aroC_140,dnaN_105,hemD_85,hisD_93,purE_14,sucA_10,thrA_3	440	35:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col440I,ColRNAI	aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_85	hisD	100	100	hisD_93	purE	100	100	purE_14	sucA	100	100	sucA_10	thrA	100	100	thrA_3	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQLW010000001.1 Salmonella enterica strain PNUSAS361647 SAMN36381046-rid18763593.denovo.01, whole genome shotgun sequence	613014..613451	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQLW010000040.1 Salmonella enterica strain PNUSAS361647 SAMN36381046-rid18763593.guided.26, whole genome shotgun sequence	3194..3631	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNQLW010000027.1 Salmonella enterica strain PNUSAS361647 SAMN36381046-rid18763593.denovo.30, whole genome shotgun sequence	2420..2550	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNQLW010000031.1 Salmonella enterica strain PNUSAS361647 SAMN36381046-rid18763593.denovo.34, whole genome shotgun sequence	749..879		enterobacteriales	Col440I	95.61	114 / 114	ABNQLW010000028.1 Salmonella enterica strain PNUSAS361647 SAMN36381046-rid18763593.denovo.31, whole genome shotgun sequence	645..758		enterobacteriales	ColRNAI	90.83	109 / 130	ABNQLW010000023.1 Salmonella enterica strain PNUSAS361647 SAMN36381046-rid18763593.denovo.24, whole genome shotgun sequence	1010..1118																																													
GCA_032570155.1_PDT001813809.1_genomic.fna	Salmonella_enterica	0.5215	661.318 KB	2	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQLY010000001.1 Salmonella enterica strain PNUSAS361649 SAMN36381045-rid18763573.denovo.01, whole genome shotgun sequence	657521..657958	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQLY010000021.1 Salmonella enterica strain PNUSAS361649 SAMN36381045-rid18763573.guided.13, whole genome shotgun sequence	32219..32656	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQLY010000002.1	150312..151178	99.08	870	0						
GCA_032570255.1_PDT001813808.1_genomic.fna	Salmonella_enterica	0.5205	375.855 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQLZ010000006.1 Salmonella enterica strain PNUSAS361648 SAMN36381048-rid18763563.denovo.06, whole genome shotgun sequence	46437..46874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQLZ010000040.1 Salmonella enterica strain PNUSAS361648 SAMN36381048-rid18763563.guided.23, whole genome shotgun sequence	1572..2009	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQLZ010000023.1 Salmonella enterica strain PNUSAS361648 SAMN36381048-rid18763563.denovo.26, whole genome shotgun sequence	2632..3274	enterobacteriales	IncX1	98.93	374 / 374	ABNQLZ010000019.1 Salmonella enterica strain PNUSAS361648 SAMN36381048-rid18763563.denovo.19, whole genome shotgun sequence	17854..18227																																																avrA	ABNQLZ010000001.1	553674..554543	99.54	870	0						
GCA_032570315.1_PDT001813796.1_genomic.fna	Salmonella_enterica	0.521	478.739 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQMB010000001.1 Salmonella enterica strain PNUSAS361643 SAMN36379733-rid18761943.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQMB010000026.1 Salmonella enterica strain PNUSAS361643 SAMN36379733-rid18761943.guided.17, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQMB010000016.1 Salmonella enterica strain PNUSAS361643 SAMN36379733-rid18761943.denovo.19, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABNQMB010000018.1 Salmonella enterica strain PNUSAS361643 SAMN36379733-rid18761943.denovo.21, whole genome shotgun sequence	3415..3676																																																avrA	ABNQMB010000008.1	175196..176065	99.54	870	0						
GCA_032570335.1_PDT001813794.1_genomic.fna	Salmonella_enterica	0.5207	707.279 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQMC010000001.1 Salmonella enterica strain PNUSAS361645 SAMN36379734-rid18761923.denovo.01, whole genome shotgun sequence	643436..643873	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQMC010000020.1 Salmonella enterica strain PNUSAS361645 SAMN36379734-rid18761923.guided.11, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032570355.1_PDT001813795.1_genomic.fna	Salmonella_enterica	0.5212	209.976 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQMD010000001.1 Salmonella enterica strain PNUSAS361640 SAMN36379724-rid18761933.denovo.01, whole genome shotgun sequence	381662..382099	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNQMD010000048.1 Salmonella enterica strain PNUSAS361640 SAMN36379724-rid18761933.guided.31, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNQMD010000016.1 Salmonella enterica strain PNUSAS361640 SAMN36379724-rid18761933.denovo.16, whole genome shotgun sequence	71431..71572																																																						avrA	ABNQMD010000004.1	175008..175876	99.77	870	0						
GCA_032570435.1_PDT001813792.1_genomic.fna	Salmonella_enterica	0.522	341.367 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQMF010000004.1 Salmonella enterica strain PNUSAS361641 SAMN36379723-rid18761903.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQMF010000036.1 Salmonella enterica strain PNUSAS361641 SAMN36379723-rid18761903.guided.26, whole genome shotgun sequence	20997..21434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNQMF010000015.1 Salmonella enterica strain PNUSAS361641 SAMN36379723-rid18761903.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNQMF010000015.1 Salmonella enterica strain PNUSAS361641 SAMN36379723-rid18761903.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNQMF010000001.1	446730..447598	100	869	0						
GCA_032570455.1_PDT001813793.1_genomic.fna	Salmonella_enterica	0.5216	558.057 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNQME010000001.1 Salmonella enterica strain PNUSAS361642 SAMN36379726-rid18761913.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNQME010000023.1 Salmonella enterica strain PNUSAS361642 SAMN36379726-rid18761913.guided.15, whole genome shotgun sequence	8134..8571	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQME010000003.1	138354..139223	98.966	870	0						
GCA_032570495.1_PDT001813706.1_genomic.fna	Salmonella_enterica	0.5229	42.125 KB	39	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQMO010000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313468 SAMN36376858-rid18761183.denovo.015, whole genome shotgun sequence	11351..11788	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQMO010000227.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313468 SAMN36376858-rid18761183.guided.133, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNQMO010000056.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313468 SAMN36376858-rid18761183.denovo.056, whole genome shotgun sequence	14120..15265	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNQMO010000229.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313468 SAMN36376858-rid18761183.guided.157, whole genome shotgun sequence	1419..2564	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNQMO010000100.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313468 SAMN36376858-rid18761183.denovo.101, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNQMO010000228.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313468 SAMN36376858-rid18761183.guided.145, whole genome shotgun sequence	3131..3946	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNQMO010000100.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313468 SAMN36376858-rid18761183.denovo.101, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQMO010000228.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313468 SAMN36376858-rid18761183.guided.145, whole genome shotgun sequence	6123..7322	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNQMO010000161.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313468 SAMN36376858-rid18761183.denovo.166, whole genome shotgun sequence	371..501	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNQMO010000162.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313468 SAMN36376858-rid18761183.denovo.167, whole genome shotgun sequence	3134..3264		enterobacteriales	IncC	100	417 / 417	ABNQMO010000039.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313468 SAMN36376858-rid18761183.denovo.039, whole genome shotgun sequence	38349..38765																																									avrA	ABNQMO010000014.1	61666..62535	99.885	870	0						
GCA_032570535.1_PDT001813704.1_genomic.fna	Salmonella_enterica	0.5204	104.82 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQMQ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313466 SAMN36376856-rid18761163.denovo.01, whole genome shotgun sequence	378321..378758	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQMQ010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313466 SAMN36376856-rid18761163.denovo.44, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQMQ010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313466 SAMN36376856-rid18761163.denovo.44, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQMQ010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313466 SAMN36376856-rid18761163.denovo.74, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQMQ010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313466 SAMN36376856-rid18761163.denovo.74, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNQMQ010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313466 SAMN36376856-rid18761163.guided.62, whole genome shotgun sequence	14581..15018	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQMQ010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313466 SAMN36376856-rid18761163.guided.67, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQMQ010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313466 SAMN36376856-rid18761163.guided.67, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQMQ010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313466 SAMN36376856-rid18761163.guided.73, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQMQ010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313466 SAMN36376856-rid18761163.guided.73, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNQMQ010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313466 SAMN36376856-rid18761163.denovo.44, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQMQ010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313466 SAMN36376856-rid18761163.guided.67, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQMQ010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313466 SAMN36376856-rid18761163.denovo.44, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQMQ010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313466 SAMN36376856-rid18761163.guided.54, whole genome shotgun sequence	5370..6569	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQMQ010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313466 SAMN36376856-rid18761163.denovo.55, whole genome shotgun sequence	9109..9668																																																						avrA	ABNQMQ010000006.1	94085..94954	99.655	870	0						
GCA_032570575.1_PDT001813705.1_genomic.fna	Salmonella_enterica	0.5217	125.48 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQMP010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313465 SAMN36376855-rid18761173.denovo.01, whole genome shotgun sequence	61044..61481	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQMP010000071.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313465 SAMN36376855-rid18761173.guided.38, whole genome shotgun sequence	14282..14719	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQMP010000050.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313465 SAMN36376855-rid18761173.denovo.53, whole genome shotgun sequence	6829..7471	enterobacteriales	IncFII(S)	100	262 / 262	ABNQMP010000053.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313465 SAMN36376855-rid18761173.denovo.56, whole genome shotgun sequence	3355..3616																																																avrA	ABNQMP010000009.1	175197..176066	99.54	870	0						
GCA_032571395.1_PDT001813790.1_genomic.fna	Salmonella_enterica	0.5214	412.183 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQMH010000001.1 Salmonella enterica strain PNUSAS361639 SAMN36379732-rid18761883.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQMH010000026.1 Salmonella enterica strain PNUSAS361639 SAMN36379732-rid18761883.guided.21, whole genome shotgun sequence	6342..6779	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQMH010000018.1 Salmonella enterica strain PNUSAS361639 SAMN36379732-rid18761883.denovo.19, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABNQMH010000019.1 Salmonella enterica strain PNUSAS361639 SAMN36379732-rid18761883.denovo.22, whole genome shotgun sequence	3436..3697																																																avrA	ABNQMH010000002.1	553636..554505	99.54	870	0						
GCA_032571435.1_PDT001813788.1_genomic.fna	Salmonella_enterica	0.5217	246.352 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQMJ010000001.1 Salmonella enterica strain PNUSAS361644 SAMN36379722-rid18761863.denovo.01, whole genome shotgun sequence	772111..772548	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQMJ010000043.1 Salmonella enterica strain PNUSAS361644 SAMN36379722-rid18761863.guided.25, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQMJ010000003.1	153272..154141	99.195	870	0						
GCA_032571455.1_PDT001813710.1_genomic.fna	Salmonella_enterica	0.5206	100.342 KB	15	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQMK010000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313467 SAMN36376857-rid18761223.denovo.008, whole genome shotgun sequence	84702..85139	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQMK010000113.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313467 SAMN36376857-rid18761223.guided.053, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNQMK010000061.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313467 SAMN36376857-rid18761223.denovo.063, whole genome shotgun sequence	4655..4914	enterobacteriales	IncX1	100	373 / 373	ABNQMK010000078.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313467 SAMN36376857-rid18761223.denovo.081, whole genome shotgun sequence	2153..2525																																																avrA	ABNQMK010000035.1	39499..40368	99.655	870	0						
GCA_032571485.1_PDT001813791.1_genomic.fna	Salmonella_enterica	0.5209	729.692 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQMG010000001.1 Salmonella enterica strain PNUSAS361646 SAMN36379730-rid18761893.denovo.01, whole genome shotgun sequence	773884..774321	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQMG010000023.1 Salmonella enterica strain PNUSAS361646 SAMN36379730-rid18761893.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col156	97.37	152 / 154	ABNQMG010000018.1 Salmonella enterica strain PNUSAS361646 SAMN36379730-rid18761893.denovo.21, whole genome shotgun sequence	967..1118	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQMG010000015.1 Salmonella enterica strain PNUSAS361646 SAMN36379730-rid18761893.denovo.18, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABNQMG010000016.1 Salmonella enterica strain PNUSAS361646 SAMN36379730-rid18761893.denovo.19, whole genome shotgun sequence	3403..3664																																									avrA	ABNQMG010000003.1	553627..554496	99.54	870	0						
GCA_032571515.1_PDT001813789.1_genomic.fna	Salmonella_enterica	0.5213	389.35 KB	5	aroC_13,dnaN_127,hemD_506,hisD_113,purE_114,sucA_107,thrA_4	3095	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_506	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQMI010000001.1 Salmonella enterica strain PNUSAS361638 SAMN36379731-rid18761873.denovo.01, whole genome shotgun sequence	498131..498568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQMI010000028.1 Salmonella enterica strain PNUSAS361638 SAMN36379731-rid18761873.guided.20, whole genome shotgun sequence	9608..10045	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQMI010000009.1	140447..141316	99.425	870	0						
GCA_032571595.1_PDT001813709.1_genomic.fna	Salmonella_enterica	0.5215	47.158 KB	38	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQML010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313470 SAMN36376860-rid18761213.denovo.050, whole genome shotgun sequence	15428..15865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQML010000258.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313470 SAMN36376860-rid18761213.guided.114, whole genome shotgun sequence	12384..12821	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNQML010000157.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313470 SAMN36376860-rid18761213.denovo.160, whole genome shotgun sequence	3094..3224	enterobacteriales	IncHI2A	99.52	630 / 630	ABNQML010000152.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313470 SAMN36376860-rid18761213.denovo.155, whole genome shotgun sequence	1570..2199		enterobacteriales	IncX1	100	373 / 373	ABNQML010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313470 SAMN36376860-rid18761213.denovo.205, whole genome shotgun sequence	1104..1476																																									avrA	ABNQML010000034.1	39484..40353	99.655	870	0						
GCA_032571615.1_PDT001813707.1_genomic.fna	Salmonella_enterica	0.5216	83.278 KB	20	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQMN010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313469 SAMN36376859-rid18761193.denovo.001, whole genome shotgun sequence	175497..175934	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQMN010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313469 SAMN36376859-rid18761193.denovo.075, whole genome shotgun sequence	11962..12753	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQMN010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313469 SAMN36376859-rid18761193.denovo.075, whole genome shotgun sequence	11962..12753	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNQMN010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313469 SAMN36376859-rid18761193.guided.057, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQMN010000150.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313469 SAMN36376859-rid18761193.guided.113, whole genome shotgun sequence	479..1270	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQMN010000150.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313469 SAMN36376859-rid18761193.guided.113, whole genome shotgun sequence	479..1270	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNQMN010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313469 SAMN36376859-rid18761193.denovo.104, whole genome shotgun sequence	1701..2576	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNQMN010000149.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313469 SAMN36376859-rid18761193.guided.109, whole genome shotgun sequence	455..1330	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNQMN010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313469 SAMN36376859-rid18761193.denovo.075, whole genome shotgun sequence	10618..11457	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQMN010000150.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313469 SAMN36376859-rid18761193.guided.113, whole genome shotgun sequence	1775..2614	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQMN010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313469 SAMN36376859-rid18761193.denovo.083, whole genome shotgun sequence	1858..3057	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQMN010000148.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313469 SAMN36376859-rid18761193.guided.097, whole genome shotgun sequence	1439..2638	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQMN010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313469 SAMN36376859-rid18761193.denovo.099, whole genome shotgun sequence	2147..2706	enterobacteriales	IncX1	98.93	374 / 374	ABNQMN010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313469 SAMN36376859-rid18761193.denovo.147, whole genome shotgun sequence	137..510																																																avrA	ABNQMN010000005.1	149828..150697	99.655	870	0						
GCA_032571635.1_PDT001813708.1_genomic.fna	Salmonella_enterica	0.523	56.459 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQMM010000019.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.denovo.019, whole genome shotgun sequence	12391..12828	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQMM010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.denovo.066, whole genome shotgun sequence	22835..23626	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQMM010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.denovo.066, whole genome shotgun sequence	22835..23626	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQMM010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.denovo.132, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQMM010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.denovo.132, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNQMM010000161.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.denovo.170, whole genome shotgun sequence	93..908	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	aac(6')-Iaa	97.49	438/438	ABNQMM010000172.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.guided.058, whole genome shotgun sequence	15453..15890	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQMM010000174.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.guided.112, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQMM010000174.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.guided.112, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQMM010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.guided.133, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQMM010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.guided.133, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNQMM010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.guided.165, whole genome shotgun sequence	126..941	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	floR	98.19	1214/1215	ABNQMM010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.denovo.129, whole genome shotgun sequence	2799..4012	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNQMM010000177.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.guided.130, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNQMM010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.denovo.066, whole genome shotgun sequence	21491..22330	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQMM010000174.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.guided.112, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQMM010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.denovo.066, whole genome shotgun sequence	7775..8974	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQMM010000175.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.guided.114, whole genome shotgun sequence	5587..6786	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNQMM010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.denovo.138, whole genome shotgun sequence	89..562	Trimethoprim	AF393510	dfrA14	100	474/474	ABNQMM010000179.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.guided.148, whole genome shotgun sequence	120..593	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQMM010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313471 SAMN36376861-rid18761203.denovo.088, whole genome shotgun sequence	13974..14533																																																						avrA	ABNQMM010000041.1	39534..40403	99.655	870	0						
GCA_032571715.1_PDT001813700.1_genomic.fna	Salmonella_enterica	0.5229	64.901 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQMT010000011.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313460 SAMN36376852-rid18761123.denovo.011, whole genome shotgun sequence	75497..75934	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQMT010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313460 SAMN36376852-rid18761123.denovo.090, whole genome shotgun sequence	2564..3355	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQMT010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313460 SAMN36376852-rid18761123.denovo.090, whole genome shotgun sequence	2564..3355	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNQMT010000161.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313460 SAMN36376852-rid18761123.guided.089, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQMT010000162.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313460 SAMN36376852-rid18761123.guided.104, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQMT010000162.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313460 SAMN36376852-rid18761123.guided.104, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNQMT010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313460 SAMN36376852-rid18761123.denovo.090, whole genome shotgun sequence	3860..4699	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQMT010000162.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313460 SAMN36376852-rid18761123.guided.104, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQMT010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313460 SAMN36376852-rid18761123.denovo.113, whole genome shotgun sequence	1825..3024	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQMT010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313460 SAMN36376852-rid18761123.guided.120, whole genome shotgun sequence	1838..3037	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQMT010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313460 SAMN36376852-rid18761123.denovo.114, whole genome shotgun sequence	2219..2778																																																						avrA	ABNQMT010000009.1	93814..94683	99.655	870	0						
GCA_032571755.1_PDT001813703.1_genomic.fna	Salmonella_enterica	0.5229	83.084 KB	18	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQMR010000024.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313464 SAMN36376854-rid18761153.denovo.024, whole genome shotgun sequence	12558..12995	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQMR010000083.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313464 SAMN36376854-rid18761153.denovo.087, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNQMR010000083.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313464 SAMN36376854-rid18761153.denovo.087, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNQMR010000083.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313464 SAMN36376854-rid18761153.denovo.087, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNQMR010000083.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313464 SAMN36376854-rid18761153.denovo.087, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNQMR010000083.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313464 SAMN36376854-rid18761153.denovo.087, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNQMR010000099.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313464 SAMN36376854-rid18761153.guided.042, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQMR010000102.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313464 SAMN36376854-rid18761153.guided.084, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNQMR010000102.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313464 SAMN36376854-rid18761153.guided.084, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNQMR010000102.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313464 SAMN36376854-rid18761153.guided.084, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNQMR010000102.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313464 SAMN36376854-rid18761153.guided.084, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNQMR010000102.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313464 SAMN36376854-rid18761153.guided.084, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNQMR010000084.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313464 SAMN36376854-rid18761153.denovo.089, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQMR010000103.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313464 SAMN36376854-rid18761153.guided.088, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQMR010000009.1	39546..40415	99.655	870	0						
GCA_032571795.1_PDT001813702.1_genomic.fna	Salmonella_enterica	0.518	65.187 KB	26	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	5	IncFII(pSE11),IncFII(pSE11),IncHI2,IncHI2A,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQMS010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.denovo.012, whole genome shotgun sequence	12487..12924	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQMS010000066.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.denovo.067, whole genome shotgun sequence	10732..11568	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNQMS010000066.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.denovo.067, whole genome shotgun sequence	9930..10732	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNQMS010000066.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.denovo.067, whole genome shotgun sequence	9929..10732	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNQMS010000066.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.denovo.067, whole genome shotgun sequence	9929..10732	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNQMS010000066.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.denovo.067, whole genome shotgun sequence	9929..10732	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNQMS010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.guided.077, whole genome shotgun sequence	7503..8339	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNQMS010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.guided.077, whole genome shotgun sequence	6701..7503	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNQMS010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.guided.077, whole genome shotgun sequence	6700..7503	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNQMS010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.guided.077, whole genome shotgun sequence	6700..7503	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNQMS010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.guided.077, whole genome shotgun sequence	6700..7503	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNQMS010000204.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.guided.105, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNQMS010000130.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.denovo.134, whole genome shotgun sequence	2393..3598	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNQMS010000205.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.guided.135, whole genome shotgun sequence	2334..3539	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	99.24	264 / 264	ABNQMS010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.denovo.045, whole genome shotgun sequence	26974..27237	enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNQMS010000099.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.denovo.102, whole genome shotgun sequence	5672..5931		enterobacteriales	IncHI2	100	327 / 327	ABNQMS010000068.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.denovo.069, whole genome shotgun sequence	10245..10571		enterobacteriales	IncHI2A	99.52	630 / 630	ABNQMS010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.denovo.099, whole genome shotgun sequence	595..1224		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNQMS010000087.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.denovo.090, whole genome shotgun sequence	1873..2014		enterobacteriales	IncX1	100	373 / 373	ABNQMS010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313463 SAMN36376853-rid18761143.denovo.147, whole genome shotgun sequence	2153..2525																				avrA	ABNQMS010000041.1	39484..40353	99.655	870	0						
GCA_032571855.1_PDT001813699.1_genomic.fna	Salmonella_enterica	0.522	51.708 KB	28	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aadA1,aac(3)-VIa,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		2	Col(pHAD28),IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQMU010000020.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313462 SAMN36376851-rid18761113.denovo.020, whole genome shotgun sequence	13313..13750	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNQMU010000088.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313462 SAMN36376851-rid18761113.denovo.089, whole genome shotgun sequence	12506..13408	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNQMU010000088.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313462 SAMN36376851-rid18761113.denovo.089, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNQMU010000179.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313462 SAMN36376851-rid18761113.guided.106, whole genome shotgun sequence	5102..5539	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNQMU010000182.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313462 SAMN36376851-rid18761113.guided.138, whole genome shotgun sequence	3505..4296	Spectinomycin, Streptomycin	JQ414041	aac(3)-VIa	100	903/903	ABNQMU010000183.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313462 SAMN36376851-rid18761113.guided.146, whole genome shotgun sequence	37..939	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	sul2	100	816/816	ABNQMU010000028.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313462 SAMN36376851-rid18761113.denovo.028, whole genome shotgun sequence	45526..46341	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNQMU010000088.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313462 SAMN36376851-rid18761113.denovo.089, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul2	100	816/816	ABNQMU010000181.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313462 SAMN36376851-rid18761113.guided.125, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNQMU010000184.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313462 SAMN36376851-rid18761113.guided.147, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABNQMU010000028.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313462 SAMN36376851-rid18761113.denovo.028, whole genome shotgun sequence	48518..49717	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNQMU010000149.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313462 SAMN36376851-rid18761113.denovo.157, whole genome shotgun sequence	100..1290	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABNQMU010000181.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313462 SAMN36376851-rid18761113.guided.125, whole genome shotgun sequence	4544..5743	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNQMU010000185.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313462 SAMN36376851-rid18761113.guided.156, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNQMU010000129.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313462 SAMN36376851-rid18761113.denovo.133, whole genome shotgun sequence	371..501	enterobacteriales	IncX4	100	374 / 374	ABNQMU010000156.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313462 SAMN36376851-rid18761113.denovo.164, whole genome shotgun sequence	186..559																																																avrA	ABNQMU010000007.1	86032..86901	99.885	870	0						
GCA_032573935.1_PDT001811640.1_genomic.fna	Salmonella_enterica	0.5207	309.424 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	2	IncFII(pCoo),IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNQMW010000001.1 Salmonella enterica strain PNUSAS361415 SAMN36356434-rid18744053.denovo.01, whole genome shotgun sequence	167933..168370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNQMW010000045.1 Salmonella enterica strain PNUSAS361415 SAMN36356434-rid18744053.guided.31, whole genome shotgun sequence	7555..7992	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNQMW010000020.1 Salmonella enterica strain PNUSAS361415 SAMN36356434-rid18744053.denovo.20, whole genome shotgun sequence	24852..26057	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNQMW010000046.1 Salmonella enterica strain PNUSAS361415 SAMN36356434-rid18744053.guided.32, whole genome shotgun sequence	1960..3165	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCoo)	96.18	262 / 262	ABNQMW010000019.1 Salmonella enterica strain PNUSAS361415 SAMN36356434-rid18744053.denovo.19, whole genome shotgun sequence	55463..55723	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNQMW010000020.1 Salmonella enterica strain PNUSAS361415 SAMN36356434-rid18744053.denovo.20, whole genome shotgun sequence	32443..32584																																																avrA	ABNQMW010000002.1	144915..145784	99.31	870	0						
GCA_032573995.1_PDT001811642.1_genomic.fna	Salmonella_enterica	0.5208	82.519 KB	19	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNQMV010000001.1 Salmonella enterica strain PNUSAS361637 SAMN36368431-rid18744063.denovo.001, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNQMV010000107.1 Salmonella enterica strain PNUSAS361637 SAMN36368431-rid18744063.guided.066, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	97.86	374 / 374	ABNQMV010000071.1 Salmonella enterica strain PNUSAS361637 SAMN36368431-rid18744063.denovo.073, whole genome shotgun sequence	6129..6502																																																																	
GCA_032574005.1_PDT001811639.1_genomic.fna	Salmonella_enterica	0.5206	412.564 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col8282,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQMX010000001.1 Salmonella enterica strain PNUSAS361448 SAMN36354999-rid18744043.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQMX010000029.1 Salmonella enterica strain PNUSAS361448 SAMN36354999-rid18744043.guided.17, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col8282	100	207 / 207	ABNQMX010000022.1 Salmonella enterica strain PNUSAS361448 SAMN36354999-rid18744043.denovo.25, whole genome shotgun sequence	414..620	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQMX010000019.1 Salmonella enterica strain PNUSAS361448 SAMN36354999-rid18744043.denovo.21, whole genome shotgun sequence	6817..7459		enterobacteriales	IncFII(S)	100	262 / 262	ABNQMX010000020.1 Salmonella enterica strain PNUSAS361448 SAMN36354999-rid18744043.denovo.23, whole genome shotgun sequence	3394..3655		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNQMX010000014.1 Salmonella enterica strain PNUSAS361448 SAMN36354999-rid18744043.denovo.14, whole genome shotgun sequence	75985..76126																																		avrA	ABNQMX010000002.1	553678..554547	99.54	870	0						
GCA_032574075.1_PDT001811636.1_genomic.fna	Salmonella_enterica	0.5219	306.227 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNQMZ010000012.1 Salmonella enterica strain PNUSAS361407 SAMN36356436-rid18744013.denovo.12, whole genome shotgun sequence	70815..71252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNQMZ010000035.1 Salmonella enterica strain PNUSAS361407 SAMN36356436-rid18744013.guided.26, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQMZ010000001.1	95581..96450	98.966	870	0						
GCA_032574115.1_PDT001811634.1_genomic.fna	Salmonella_enterica	0.5224	66.947 KB	23	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQNA010000020.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323233 SAMN36356463-rid18743993.denovo.020, whole genome shotgun sequence	52376..52813	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQNA010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323233 SAMN36356463-rid18743993.denovo.069, whole genome shotgun sequence	22840..23631	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQNA010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323233 SAMN36356463-rid18743993.denovo.069, whole genome shotgun sequence	22840..23631	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQNA010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323233 SAMN36356463-rid18743993.denovo.114, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQNA010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323233 SAMN36356463-rid18743993.denovo.114, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNQNA010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323233 SAMN36356463-rid18743993.guided.028, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQNA010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323233 SAMN36356463-rid18743993.guided.068, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQNA010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323233 SAMN36356463-rid18743993.guided.068, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQNA010000144.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323233 SAMN36356463-rid18743993.guided.113, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQNA010000144.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323233 SAMN36356463-rid18743993.guided.113, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNQNA010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323233 SAMN36356463-rid18743993.denovo.069, whole genome shotgun sequence	21496..22335	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQNA010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323233 SAMN36356463-rid18743993.guided.068, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQNA010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323233 SAMN36356463-rid18743993.denovo.069, whole genome shotgun sequence	7780..8979	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQNA010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323233 SAMN36356463-rid18743993.guided.068, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQNA010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323233 SAMN36356463-rid18743993.denovo.082, whole genome shotgun sequence	14636..15195																																																						avrA	ABNQNA010000042.1	39430..40299	99.655	870	0						
GCA_032574135.1_PDT001811637.1_genomic.fna	Salmonella_enterica	0.5231	91.516 KB	16	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNQMY010000029.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323228 SAMN36355999-rid18744023.denovo.029, whole genome shotgun sequence	12509..12946	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNQMY010000100.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323228 SAMN36355999-rid18744023.guided.047, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNQMY010000081.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323228 SAMN36355999-rid18744023.denovo.084, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABNQMY010000079.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323228 SAMN36355999-rid18744023.denovo.082, whole genome shotgun sequence	3175..3285																																																avrA	ABNQMY010000004.1	152998..153867	99.425	870	0						
GCA_032574195.1_PDT001811633.1_genomic.fna	Salmonella_enterica	0.5225	75.975 KB	23	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQNB010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.denovo.027, whole genome shotgun sequence	52315..52752	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQNB010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.denovo.055, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQNB010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.denovo.055, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQNB010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.denovo.099, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQNB010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.denovo.099, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNQNB010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.guided.068, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQNB010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.guided.068, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNQNB010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.guided.086, whole genome shotgun sequence	7416..7853	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNQNB010000137.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.guided.102, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQNB010000137.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.guided.102, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNQNB010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.denovo.104, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNQNB010000138.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.guided.105, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNQNB010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.denovo.097, whole genome shotgun sequence	2826..4039	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNQNB010000136.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.guided.100, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNQNB010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.denovo.055, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQNB010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.guided.068, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQNB010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.denovo.055, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQNB010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.guided.068, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNQNB010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.denovo.094, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNQNB010000139.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.guided.114, whole genome shotgun sequence	96..569	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQNB010000073.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323225 SAMN36355968-rid18743983.denovo.075, whole genome shotgun sequence	14637..15196																																																						avrA	ABNQNB010000024.1	39430..40299	99.655	870	0						
GCA_032574235.1_PDT001811630.1_genomic.fna	Salmonella_enterica	0.5224	414.119 KB	4	aroC_139,dnaN_174,hemD_68,hisD_132,purE_133,sucA_9,thrA_168	578	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_139	dnaN	100	100	dnaN_174	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_133	sucA	100	100	sucA_9	thrA	100	100	thrA_168	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQND010000001.1 Salmonella enterica strain PNUSAS361490 SAMN36357072-rid18743953.denovo.01, whole genome shotgun sequence	145161..145598	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQND010000025.1 Salmonella enterica strain PNUSAS361490 SAMN36357072-rid18743953.guided.21, whole genome shotgun sequence	436..873	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQND010000003.1	574402..575271	99.195	870	0						
GCA_032574295.1_PDT001811629.1_genomic.fna	Salmonella_enterica	0.5221	275.988 KB	7	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQNE010000003.1 Salmonella enterica strain PNUSAS361431 SAMN36357283-rid18743943.denovo.03, whole genome shotgun sequence	38539..38976	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQNE010000035.1 Salmonella enterica strain PNUSAS361431 SAMN36357283-rid18743943.guided.24, whole genome shotgun sequence	22218..22655	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQNE010000011.1	173771..174640	99.31	870	0						
GCA_032574335.1_PDT001811628.1_genomic.fna	Salmonella_enterica	0.5202	452.782 KB	5	aroC_7,dnaN_107,hemD_79,hisD_235,purE_192,sucA_193,thrA_105	647	45:m,t:-	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_235	purE	100	100	purE_192	sucA	100	100	sucA_193	thrA	100	100	thrA_105	45	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Apapa		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNQNF010000001.1 Salmonella enterica strain PNUSAS361447 SAMN36354947-rid18743933.denovo.01, whole genome shotgun sequence	329262..329699	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNQNF010000040.1 Salmonella enterica strain PNUSAS361447 SAMN36354947-rid18743933.guided.24, whole genome shotgun sequence	16454..16891	Amikacin, Tobramycin	NC_003197	fosA7	95.98	423/423	ABNQNF010000004.1 Salmonella enterica strain PNUSAS361447 SAMN36354947-rid18743933.denovo.04, whole genome shotgun sequence	154729..155150	Fosfomycin	LAPJ01000014	fosA7	95.98	423/423	ABNQNF010000042.1 Salmonella enterica strain PNUSAS361447 SAMN36354947-rid18743933.guided.29, whole genome shotgun sequence	6455..6876	Fosfomycin	LAPJ01000014	qnrB19	100	645/645	ABNQNF010000026.1 Salmonella enterica strain PNUSAS361447 SAMN36354947-rid18743933.denovo.30, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNQNF010000043.1 Salmonella enterica strain PNUSAS361447 SAMN36354947-rid18743933.guided.38, whole genome shotgun sequence	93..737	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNQNF010000026.1 Salmonella enterica strain PNUSAS361447 SAMN36354947-rid18743933.denovo.30, whole genome shotgun sequence	1519..1649																																																						avrA	ABNQNF010000003.1	125710..126579	99.655	870	0						
GCA_032574355.1_PDT001811631.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQNC010000001.1 Salmonella enterica strain PNUSAS361449 SAMN36354944-rid18743963.denovo.01, whole genome shotgun sequence	200090..200527	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQNC010000022.1 Salmonella enterica strain PNUSAS361449 SAMN36354944-rid18743963.guided.13, whole genome shotgun sequence	17324..17761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQNC010000013.1 Salmonella enterica strain PNUSAS361449 SAMN36354944-rid18743963.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNQNC010000013.1 Salmonella enterica strain PNUSAS361449 SAMN36354944-rid18743963.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNQNC010000002.1	553635..554504	99.54	870	0						
GCA_032574415.1_PDT001811627.1_genomic.fna	Salmonella_enterica	0.5223	724.828 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQNH010000001.1 Salmonella enterica strain PNUSAS361495 SAMN36357075-rid18743923.denovo.01, whole genome shotgun sequence	401117..401554	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNQNH010000021.1 Salmonella enterica strain PNUSAS361495 SAMN36357075-rid18743923.guided.14, whole genome shotgun sequence	35436..35873	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNQNH010000004.1	553810..554679	99.77	870	0						
GCA_032574475.1_PDT001811625.1_genomic.fna	Salmonella_enterica	0.5227	53.371 KB	30	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQNJ010000012.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323223 SAMN36355966-rid18743903.denovo.012, whole genome shotgun sequence	75497..75934	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQNJ010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323223 SAMN36355966-rid18743903.guided.115, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQNJ010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323223 SAMN36355966-rid18743903.denovo.120, whole genome shotgun sequence	5351..5910																																																						avrA	ABNQNJ010000026.1	39693..40562	99.655	870	0						
GCA_032574515.1_PDT001811624.1_genomic.fna	Salmonella_enterica	0.5218	225.511 KB	8	aroC_2,dnaN_59,hemD_23,hisD_64,purE_38,sucA_61,thrA_122	377	8:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		3	Col(pHAD28),Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_59	hemD	100	100	hemD_23	hisD	100	100	hisD_64	purE	100	100	purE_38	sucA	100	100	sucA_61	thrA	100	100	thrA_122	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNQNI010000010.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain FSIS12323196 SAMN36352947-rid18743893.denovo.10, whole genome shotgun sequence	144687..145124	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNQNI010000050.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain FSIS12323196 SAMN36352947-rid18743893.guided.30, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNQNI010000039.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain FSIS12323196 SAMN36352947-rid18743893.denovo.43, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNQNI010000053.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain FSIS12323196 SAMN36352947-rid18743893.guided.42, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNQNI010000039.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain FSIS12323196 SAMN36352947-rid18743893.denovo.43, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNQNI010000053.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain FSIS12323196 SAMN36352947-rid18743893.guided.42, whole genome shotgun sequence	2517..2647		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQNI010000034.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain FSIS12323196 SAMN36352947-rid18743893.denovo.36, whole genome shotgun sequence	13450..14092		enterobacteriales	IncFII(S)	97.71	262 / 262	ABNQNI010000028.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain FSIS12323196 SAMN36352947-rid18743893.denovo.28, whole genome shotgun sequence	30836..31095																																		avrA	ABNQNI010000001.1	214744..215613	99.425	870	0						
GCA_032574535.1_PDT001811623.1_genomic.fna	Salmonella_enterica	0.5213	275.191 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQNK010000001.1 Salmonella enterica strain PNUSAS361633 SAMN36361151-rid18743883.denovo.01, whole genome shotgun sequence	499135..499572	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQNK010000033.1 Salmonella enterica strain PNUSAS361633 SAMN36361151-rid18743883.guided.21, whole genome shotgun sequence	24839..25276	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQNK010000024.1 Salmonella enterica strain PNUSAS361633 SAMN36361151-rid18743883.denovo.26, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNQNK010000020.1 Salmonella enterica strain PNUSAS361633 SAMN36361151-rid18743883.denovo.20, whole genome shotgun sequence	37108..37369																																																avrA	ABNQNK010000002.1	553642..554511	99.54	870	0						
GCA_032574655.1_PDT001811620.1_genomic.fna	Salmonella_enterica	0.5206	384.578 KB	4	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQNN010000001.1 Salmonella enterica strain PNUSAS361630 SAMN36360388-rid18743853.denovo.01, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQNN010000031.1 Salmonella enterica strain PNUSAS361630 SAMN36360388-rid18743853.guided.20, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032575315.1_PDT001811614.1_genomic.fna	Salmonella_enterica	0.5219	222.464 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQNR010000002.1 Salmonella enterica strain PNUSAS361414 SAMN36356438-rid18743793.denovo.02, whole genome shotgun sequence	145192..145629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNQNR010000071.1 Salmonella enterica strain PNUSAS361414 SAMN36356438-rid18743793.guided.43, whole genome shotgun sequence	8667..9104	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNQNR010000036.1 Salmonella enterica strain PNUSAS361414 SAMN36356438-rid18743793.denovo.36, whole genome shotgun sequence	6833..7475	enterobacteriales	IncFII(S)	100	262 / 262	ABNQNR010000029.1 Salmonella enterica strain PNUSAS361414 SAMN36356438-rid18743793.denovo.29, whole genome shotgun sequence	29368..29629																																																avrA	ABNQNR010000001.1	400806..401675	99.885	870	0						
GCA_032575335.1_PDT001811612.1_genomic.fna	Salmonella_enterica	0.5191	178.85 KB	8	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQNS010000002.1 Salmonella enterica strain PNUSAS361417 SAMN36356440-rid18743773.denovo.02, whole genome shotgun sequence	370303..370740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQNS010000050.1 Salmonella enterica strain PNUSAS361417 SAMN36356440-rid18743773.guided.28, whole genome shotgun sequence	15908..16345	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032575345.1_PDT001811619.1_genomic.fna	Salmonella_enterica	0.5219	339.565 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQNO010000001.1 Salmonella enterica strain PNUSAS361420 SAMN36356437-rid18743843.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQNO010000037.1 Salmonella enterica strain PNUSAS361420 SAMN36356437-rid18743843.guided.26, whole genome shotgun sequence	24345..24782	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQNO010000003.1	39349..40218	99.655	870	0						
GCA_032575375.1_PDT001811613.1_genomic.fna	Salmonella_enterica	0.5211	396.656 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQNQ010000009.1 Salmonella enterica strain PNUSAS361413 SAMN36356441-rid18743783.denovo.09, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQNQ010000038.1 Salmonella enterica strain PNUSAS361413 SAMN36356441-rid18743783.guided.24, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNQNQ010000018.1 Salmonella enterica strain PNUSAS361413 SAMN36356441-rid18743783.denovo.18, whole genome shotgun sequence	34957..35490																																																						avrA	ABNQNQ010000003.1	39478..40344	98.966	870	0						
GCA_032575395.1_PDT001811617.1_genomic.fna	Salmonella_enterica	0.5201	195.368 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	3	IncFIB(pN55391),IncX4,pXuzhou21	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQNP010000001.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQNP010000032.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.denovo.32, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQNP010000032.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.denovo.32, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQNP010000045.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.denovo.50, whole genome shotgun sequence	1052..2077	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQNP010000045.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.denovo.50, whole genome shotgun sequence	47..823	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNQNP010000064.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.guided.46, whole genome shotgun sequence	2747..3184	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQNP010000065.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.guided.47, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQNP010000065.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.guided.47, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQNP010000066.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.guided.53, whole genome shotgun sequence	1093..2118	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQNP010000066.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.guided.53, whole genome shotgun sequence	88..864	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNQNP010000050.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.denovo.56, whole genome shotgun sequence	962..1837	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNQNP010000067.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.guided.57, whole genome shotgun sequence	839..1714	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNQNP010000032.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.denovo.32, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQNP010000065.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.guided.47, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQNP010000032.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.denovo.32, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQNP010000062.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.guided.38, whole genome shotgun sequence	7871..9070	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQNP010000038.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.denovo.40, whole genome shotgun sequence	9108..9667	enterobacteriales	IncX4	100	712 / 712	ABNQNP010000033.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.denovo.33, whole genome shotgun sequence	2480..3191		enterobacteriales	pXuzhou21	99.86	720 / 720	ABNQNP010000031.1 Salmonella enterica strain PNUSAS361421 SAMN36356439-rid18743823.denovo.31, whole genome shotgun sequence	23692..24411																																									avrA	ABNQNP010000003.1	39367..40236	99.655	870	0						
GCA_032575475.1_PDT001811611.1_genomic.fna	Salmonella_enterica	0.5223	617.281 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col(BS512)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQNT010000001.1 Salmonella enterica strain PNUSAS361500 SAMN36357050-rid18743763.denovo.01, whole genome shotgun sequence	458320..458757	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNQNT010000023.1 Salmonella enterica strain PNUSAS361500 SAMN36357050-rid18743763.guided.19, whole genome shotgun sequence	1571..2008	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(BS512)	100	233 / 233	ABNQNT010000018.1 Salmonella enterica strain PNUSAS361500 SAMN36357050-rid18743763.denovo.21, whole genome shotgun sequence	400..632																																																						avrA	ABNQNT010000008.1	174118..174987	99.77	870	0						
GCA_032575515.1_PDT001811609.1_genomic.fna	Salmonella_enterica	0.5223	433.445 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQNU010000001.1 Salmonella enterica strain PNUSAS361456 SAMN36355001-rid18743743.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNQNU010000025.1 Salmonella enterica strain PNUSAS361456 SAMN36355001-rid18743743.guided.18, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQNU010000002.1	129887..130756	98.966	870	0						
GCA_032575575.1_PDT001811608.1_genomic.fna	Salmonella_enterica	0.5214	201.952 KB	8	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNQNY010000012.1 Salmonella enterica strain PNUSAS361410 SAMN36356435-rid18743733.denovo.12, whole genome shotgun sequence	70815..71252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNQNY010000039.1 Salmonella enterica strain PNUSAS361410 SAMN36356435-rid18743733.guided.20, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQNY010000001.1	39453..40322	98.966	870	0						
GCA_032575585.1_PDT001811610.1_genomic.fna	Salmonella_enterica	0.5218	52.733 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQNV010000012.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323224 SAMN36355967-rid18743753.denovo.012, whole genome shotgun sequence	13381..13818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNQNV010000152.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323224 SAMN36355967-rid18743753.guided.058, whole genome shotgun sequence	17371..17808	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNQNV010000013.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323224 SAMN36355967-rid18743753.denovo.013, whole genome shotgun sequence	36237..37052	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNQNV010000151.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323224 SAMN36355967-rid18743753.guided.032, whole genome shotgun sequence	35594..36409	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNQNV010000013.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323224 SAMN36355967-rid18743753.denovo.013, whole genome shotgun sequence	32861..34060	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQNV010000151.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323224 SAMN36355967-rid18743753.guided.032, whole genome shotgun sequence	38586..39785	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	ColpVC	98.96	193 / 193	ABNQNV010000131.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323224 SAMN36355967-rid18743753.denovo.135, whole genome shotgun sequence	805..997																																																						avrA	ABNQNV010000007.1	104983..105852	99.885	870	0						
GCA_032575675.1_PDT001811604.1_genomic.fna	Salmonella_enterica	0.5209	225.85 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQOA010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323220 SAMN36352993-rid18743693.denovo.01, whole genome shotgun sequence	293266..293703	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQOA010000047.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323220 SAMN36352993-rid18743693.guided.21, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQOA010000025.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323220 SAMN36352993-rid18743693.denovo.26, whole genome shotgun sequence	28370..29012	enterobacteriales	IncFII(S)	100	262 / 262	ABNQOA010000034.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323220 SAMN36352993-rid18743693.denovo.37, whole genome shotgun sequence	3413..3674																																																avrA	ABNQOA010000002.1	585342..586211	99.54	870	0						
GCA_032575695.1_PDT001811607.1_genomic.fna	Salmonella_enterica	0.5222	90.056 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQNX010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323226 SAMN36356002-rid18743723.denovo.031, whole genome shotgun sequence	12462..12899	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQNX010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323226 SAMN36356002-rid18743723.denovo.049, whole genome shotgun sequence	1321..2112	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQNX010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323226 SAMN36356002-rid18743723.denovo.049, whole genome shotgun sequence	1321..2112	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNQNX010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323226 SAMN36356002-rid18743723.guided.058, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQNX010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323226 SAMN36356002-rid18743723.guided.065, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQNX010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323226 SAMN36356002-rid18743723.guided.065, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNQNX010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323226 SAMN36356002-rid18743723.denovo.049, whole genome shotgun sequence	2617..3456	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQNX010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323226 SAMN36356002-rid18743723.guided.065, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQNX010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323226 SAMN36356002-rid18743723.denovo.049, whole genome shotgun sequence	15973..17172	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQNX010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323226 SAMN36356002-rid18743723.guided.065, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQNX010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323226 SAMN36356002-rid18743723.denovo.043, whole genome shotgun sequence	33256..33815																																																						avrA	ABNQNX010000003.1	93814..94683	99.655	870	0						
GCA_032576015.1_PDT001811586.1_genomic.fna	Salmonella_enterica	0.5215	74.634 KB	23	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aadA1	99.75	792/792	ABNQOI010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323171 SAMN36344687-rid18743513.denovo.050, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQOI010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323171 SAMN36344687-rid18743513.denovo.050, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNQOI010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323171 SAMN36344687-rid18743513.denovo.053, whole genome shotgun sequence	14067..14504	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNQOI010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323171 SAMN36344687-rid18743513.denovo.103, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQOI010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323171 SAMN36344687-rid18743513.denovo.103, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNQOI010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323171 SAMN36344687-rid18743513.guided.055, whole genome shotgun sequence	14098..14535	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQOI010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323171 SAMN36344687-rid18743513.guided.095, whole genome shotgun sequence	949..1740	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQOI010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323171 SAMN36344687-rid18743513.guided.095, whole genome shotgun sequence	949..1740	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQOI010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323171 SAMN36344687-rid18743513.guided.105, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQOI010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323171 SAMN36344687-rid18743513.guided.105, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNQOI010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323171 SAMN36344687-rid18743513.denovo.050, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQOI010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323171 SAMN36344687-rid18743513.guided.095, whole genome shotgun sequence	2245..3084	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQOI010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323171 SAMN36344687-rid18743513.denovo.050, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQOI010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323171 SAMN36344687-rid18743513.guided.089, whole genome shotgun sequence	4312..5511	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQOI010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323171 SAMN36344687-rid18743513.denovo.064, whole genome shotgun sequence	7653..8212	enterobacteriales	IncX1	98.93	374 / 374	ABNQOI010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323171 SAMN36344687-rid18743513.denovo.152, whole genome shotgun sequence	215..588																																																avrA	ABNQOI010000041.1	39691..40560	99.655	870	0						
GCA_032576095.1_PDT001811584.1_genomic.fna	Salmonella_enterica	0.5218	93.046 KB	17	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQOK010000012.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.denovo.012, whole genome shotgun sequence	83778..84215	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQOK010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.denovo.045, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQOK010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.denovo.045, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQOK010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.denovo.096, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQOK010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.denovo.096, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNQOK010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.denovo.117, whole genome shotgun sequence	93..908	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aac(6')-Iaa	97.49	438/438	ABNQOK010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.guided.055, whole genome shotgun sequence	12442..12879	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQOK010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.guided.087, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQOK010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.guided.087, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQOK010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.guided.094, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQOK010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.guided.094, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNQOK010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.guided.110, whole genome shotgun sequence	127..942	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	floR	98.19	1214/1215	ABNQOK010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.denovo.090, whole genome shotgun sequence	2880..4093	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNQOK010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.guided.091, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNQOK010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.denovo.045, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQOK010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.guided.087, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQOK010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.denovo.045, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQOK010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.guided.082, whole genome shotgun sequence	66..1265	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNQOK010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.denovo.088, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNQOK010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.guided.092, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQOK010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323186 SAMN36344685-rid18743493.denovo.057, whole genome shotgun sequence	9109..9668																																																						avrA	ABNQOK010000016.1	94091..94960	99.655	870	0						
GCA_032576115.1_PDT001811583.1_genomic.fna	Salmonella_enterica	0.5214	106.814 KB	16	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQOL010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323170 SAMN36344686-rid18743483.denovo.026, whole genome shotgun sequence	52375..52812	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQOL010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323170 SAMN36344686-rid18743483.denovo.046, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQOL010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323170 SAMN36344686-rid18743483.denovo.046, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQOL010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323170 SAMN36344686-rid18743483.denovo.081, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQOL010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323170 SAMN36344686-rid18743483.denovo.081, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNQOL010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323170 SAMN36344686-rid18743483.guided.056, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQOL010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323170 SAMN36344686-rid18743483.guided.076, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQOL010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323170 SAMN36344686-rid18743483.guided.076, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQOL010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323170 SAMN36344686-rid18743483.guided.080, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQOL010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323170 SAMN36344686-rid18743483.guided.080, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNQOL010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323170 SAMN36344686-rid18743483.denovo.046, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQOL010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323170 SAMN36344686-rid18743483.guided.076, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQOL010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323170 SAMN36344686-rid18743483.denovo.046, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQOL010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323170 SAMN36344686-rid18743483.guided.065, whole genome shotgun sequence	7877..9076	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQOL010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323170 SAMN36344686-rid18743483.denovo.063, whole genome shotgun sequence	14638..15197	enterobacteriales	IncX1	98.93	374 / 374	ABNQOL010000103.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323170 SAMN36344686-rid18743483.denovo.109, whole genome shotgun sequence	214..587																																																avrA	ABNQOL010000012.1	124122..124991	99.655	870	0						
GCA_032576125.1_PDT001811585.1_genomic.fna	Salmonella_enterica	0.5222	98.361 KB	16	aroC_99,dnaN_175,hemD_58,hisD_11,purE_111,sucA_9,thrA_2	639	-:y:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),IncN	aroC	100	100	aroC_99	dnaN	100	100	dnaN_175	hemD	100	100	hemD_58	hisD	100	100	hisD_11	purE	100	100	purE_111	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:y:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNQOJ010000020.1 Salmonella enterica subsp. enterica serovar Orion strain FSIS12323172 SAMN36344688-rid18743503.denovo.20, whole genome shotgun sequence	12455..12892	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNQOJ010000088.1 Salmonella enterica subsp. enterica serovar Orion strain FSIS12323172 SAMN36344688-rid18743503.guided.59, whole genome shotgun sequence	7207..7644	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNQOJ010000069.1 Salmonella enterica subsp. enterica serovar Orion strain FSIS12323172 SAMN36344688-rid18743503.denovo.72, whole genome shotgun sequence	1889..3088	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQOJ010000090.1 Salmonella enterica subsp. enterica serovar Orion strain FSIS12323172 SAMN36344688-rid18743503.guided.75, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.04	115 / 131	ABNQOJ010000074.1 Salmonella enterica subsp. enterica serovar Orion strain FSIS12323172 SAMN36344688-rid18743503.denovo.78, whole genome shotgun sequence	1100..1214	enterobacteriales	IncN	100	514 / 514	ABNQOJ010000080.1 Salmonella enterica subsp. enterica serovar Orion strain FSIS12323172 SAMN36344688-rid18743503.denovo.84, whole genome shotgun sequence	259..772																																																											
GCA_032576175.1_PDT001811582.1_genomic.fna	Salmonella_enterica	0.5213	556.039 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQOM010000001.1 Salmonella enterica strain PNUSAS361636 SAMN36360365-rid18743473.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQOM010000027.1 Salmonella enterica strain PNUSAS361636 SAMN36360365-rid18743473.guided.23, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032576215.1_PDT001811581.1_genomic.fna	Salmonella_enterica	0.5213	232.184 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQON010000001.1 Salmonella enterica strain PNUSAS361631 SAMN36361148-rid18743463.denovo.01, whole genome shotgun sequence	539780..540217	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQON010000041.1 Salmonella enterica strain PNUSAS361631 SAMN36361148-rid18743463.guided.30, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQON010000027.1 Salmonella enterica strain PNUSAS361631 SAMN36361148-rid18743463.denovo.28, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNQON010000029.1 Salmonella enterica strain PNUSAS361631 SAMN36361148-rid18743463.denovo.32, whole genome shotgun sequence	3398..3659																																																avrA	ABNQON010000006.1	140720..141589	99.54	870	0						
GCA_032576275.1_PDT001811580.1_genomic.fna	Salmonella_enterica	0.521	672.28 KB	3	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQOO010000002.1 Salmonella enterica strain PNUSAS361628 SAMN36361150-rid18743453.denovo.02, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQOO010000022.1 Salmonella enterica strain PNUSAS361628 SAMN36361150-rid18743453.guided.18, whole genome shotgun sequence	2019..2456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032576295.1_PDT001811579.1_genomic.fna	Salmonella_enterica	0.5208	569.687 KB	3	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQOP010000001.1 Salmonella enterica strain PNUSAS361632 SAMN36361147-rid18743443.denovo.01, whole genome shotgun sequence	377191..377628	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQOP010000028.1 Salmonella enterica strain PNUSAS361632 SAMN36361147-rid18743443.guided.17, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032576315.1_PDT001811577.1_genomic.fna	Salmonella_enterica	0.5212	255.18 KB	8	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQOR010000001.1 Salmonella enterica strain PNUSAS361635 SAMN36360364-rid18743423.denovo.01, whole genome shotgun sequence	192926..193363	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQOR010000043.1 Salmonella enterica strain PNUSAS361635 SAMN36360364-rid18743423.guided.30, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQOR010000010.1	140191..141059	99.195	870	0						
GCA_032576395.1_PDT001811576.1_genomic.fna	Salmonella_enterica	0.5221	307.673 KB	5	aroC_188,dnaN_112,hemD_121,hisD_14,purE_176,sucA_183,thrA_1	590	3,10:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_188	dnaN	100	100	dnaN_112	hemD	100	100	hemD_121	hisD	100	100	hisD_14	purE	100	100	purE_176	sucA	100	100	sucA_183	thrA	100	100	thrA_1	3,10	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Amsterdam		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNQOS010000001.1 Salmonella enterica strain PNUSAS361634 SAMN36361149-rid18743413.denovo.01, whole genome shotgun sequence	720998..721435	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNQOS010000036.1 Salmonella enterica strain PNUSAS361634 SAMN36361149-rid18743413.guided.34, whole genome shotgun sequence	909..1346	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNQOS010000005.1	124829..125698	98.851	870	0						
GCA_032576475.1_PDT001811578.1_genomic.fna	Salmonella_enterica	0.5205	375.073 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_4	371	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNQOQ010000001.1 Salmonella enterica strain PNUSAS361629 SAMN36360413-rid18743433.denovo.01, whole genome shotgun sequence	249432..249869	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNQOQ010000036.1 Salmonella enterica strain PNUSAS361629 SAMN36360413-rid18743433.guided.28, whole genome shotgun sequence	14073..14510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNQOQ010000028.1 Salmonella enterica strain PNUSAS361629 SAMN36360413-rid18743433.denovo.31, whole genome shotgun sequence	357..487																																																						avrA	ABNQOQ010000009.1	140341..141209	99.425	870	0						
GCA_032577135.1_PDT001811565.1_genomic.fna	Salmonella_enterica	0.5238	57.536 KB	27	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQDEQ010000019.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.denovo.019, whole genome shotgun sequence	12484..12921	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	DAQDEQ010000119.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.denovo.124, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	DAQDEQ010000160.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.guided.084, whole genome shotgun sequence	9650..10087	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	DAQDEQ010000164.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.guided.123, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	DAQDEQ010000119.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.denovo.124, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	DAQDEQ010000164.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.guided.123, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	DAQDEQ010000110.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.denovo.114, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	DAQDEQ010000163.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.guided.113, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	DAQDEQ010000102.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.denovo.104, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	DAQDEQ010000165.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.guided.129, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	DAQDEQ010000119.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.denovo.124, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	DAQDEQ010000164.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.guided.123, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	DAQDEQ010000143.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.denovo.151, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	DAQDEQ010000167.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.guided.150, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	DAQDEQ010000102.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.denovo.104, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	DAQDEQ010000166.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.guided.133, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	DAQDEQ010000102.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.denovo.104, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	DAQDEQ010000166.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.guided.133, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	DAQDEQ010000088.1 TPA_asm: Salmonella enterica subsp. enterica strain Newport SAMN36308508-rid18743393.denovo.089, whole genome shotgun sequence	4434..4684																																																						avrA	DAQDEQ010000023.1	61526..62395	99.77	870	0						
GCA_032577175.1_PDT001811563.1_genomic.fna	Salmonella_enterica	0.5237	58.44 KB	26	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	9,46:e,h:1,6	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	9,46	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I 9,46:e,h:1,6	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDET010000021.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308510-rid18743133.denovo.021, whole genome shotgun sequence	12456..12893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDET010000105.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308510-rid18743133.denovo.106, whole genome shotgun sequence	2487..3323	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDET010000105.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308510-rid18743133.denovo.106, whole genome shotgun sequence	3323..4126	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQDET010000177.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308510-rid18743133.guided.114, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDET010000177.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308510-rid18743133.guided.114, whole genome shotgun sequence	5879..6682	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	DAQDET010000178.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308510-rid18743133.guided.117, whole genome shotgun sequence	3839..4276	Amikacin, Tobramycin	NC_003197	blaTEM-1A	100	861/861	DAQDET010000105.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308510-rid18743133.denovo.106, whole genome shotgun sequence	5164..6024	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	DAQDET010000177.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308510-rid18743133.guided.114, whole genome shotgun sequence	3981..4841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	DAQDET010000069.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308510-rid18743133.denovo.069, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	DAQDET010000181.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308510-rid18743133.guided.137, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	99.88	816/816	DAQDET010000105.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308510-rid18743133.denovo.106, whole genome shotgun sequence	4187..5002	Sulfamethoxazole	AY034138	sul2	99.88	816/816	DAQDET010000177.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308510-rid18743133.guided.114, whole genome shotgun sequence	5003..5818	Sulfamethoxazole	AY034138	tet(A)	100	1226/1275	DAQDET010000105.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308510-rid18743133.denovo.106, whole genome shotgun sequence	1..1226	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	DAQDET010000179.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308510-rid18743133.guided.119, whole genome shotgun sequence	788..1987	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	DAQDET010000182.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308510-rid18743133.guided.150, whole genome shotgun sequence	713..1987	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	DAQDET010000069.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308510-rid18743133.denovo.069, whole genome shotgun sequence	11449..11699																																																						avrA	DAQDET010000006.1	105428..106297	99.54	870	0						
GCA_032577195.1_PDT001811564.1_genomic.fna	Salmonella_enterica	0.5231	102.046 KB	15	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1A,blaTEM-1A,floR,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDES010000026.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.denovo.26, whole genome shotgun sequence	15510..15947	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDES010000065.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.denovo.68, whole genome shotgun sequence	548..1384	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDES010000065.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.denovo.68, whole genome shotgun sequence	1384..2187	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	DAQDES010000083.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.guided.50, whole genome shotgun sequence	14488..14925	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDES010000085.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.guided.67, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDES010000085.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.guided.67, whole genome shotgun sequence	5879..6682	Streptomycin	AF321551	blaTEM-1A	100	861/861	DAQDES010000065.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.denovo.68, whole genome shotgun sequence	3225..4085	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	DAQDES010000085.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.guided.67, whole genome shotgun sequence	3981..4841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	DAQDES010000049.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.denovo.49, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	DAQDES010000087.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.guided.73, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	floR	99.18	1097/1215	DAQDES010000088.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.guided.76, whole genome shotgun sequence	2477..3573	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	DAQDES010000065.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.denovo.68, whole genome shotgun sequence	2248..3063	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDES010000085.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.guided.67, whole genome shotgun sequence	5003..5818	Sulfamethoxazole	AY034138	tet(A)	100	1226/1275	DAQDES010000074.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.denovo.82, whole genome shotgun sequence	692..1917	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	DAQDES010000089.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.guided.78, whole genome shotgun sequence	788..1987	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	DAQDES010000090.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.guided.80, whole genome shotgun sequence	713..1987	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	DAQDES010000049.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308509-rid18743143.denovo.49, whole genome shotgun sequence	11449..11699																																																						avrA	DAQDES010000011.1	130389..131258	99.54	870	0						
GCA_032577295.1_PDT001811562.1_genomic.fna	Salmonella_enterica	0.5224	58.92 KB	29	aroC_347,dnaN_394,hemD_78,hisD_496,purE_426,sucA_9,thrA_102	1549	8:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_347	dnaN	100	100	dnaN_394	hemD	100	100	hemD_78	hisD	100	100	hisD_496	purE	100	100	purE_426	sucA	100	100	sucA_9	thrA	100	100	thrA_102	8	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Altona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDER010000058.1 TPA_asm: Salmonella enterica subsp. enterica strain Altona SAMN36308511-rid18743123.denovo.058, whole genome shotgun sequence	15463..15900	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDER010000166.1 TPA_asm: Salmonella enterica subsp. enterica strain Altona SAMN36308511-rid18743123.guided.101, whole genome shotgun sequence	3882..4319	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDER010000067.1	22215..23084	99.195	870	0						
GCA_032577335.1_PDT001811561.1_genomic.fna	Salmonella_enterica	0.5231	96.784 KB	13	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	1,3,19:e,h:1,6	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	1,3,19	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Hayindogo		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDEU010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308512-rid18743113.denovo.001, whole genome shotgun sequence	344929..345366	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDEU010000070.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308512-rid18743113.denovo.073, whole genome shotgun sequence	548..1384	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDEU010000070.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308512-rid18743113.denovo.073, whole genome shotgun sequence	1384..2187	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQDEU010000099.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308512-rid18743113.guided.072, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDEU010000099.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308512-rid18743113.guided.072, whole genome shotgun sequence	5879..6682	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	DAQDEU010000100.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308512-rid18743113.guided.077, whole genome shotgun sequence	4008..4445	Amikacin, Tobramycin	NC_003197	blaTEM-1A	100	861/861	DAQDEU010000070.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308512-rid18743113.denovo.073, whole genome shotgun sequence	3225..4085	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	DAQDEU010000099.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308512-rid18743113.guided.072, whole genome shotgun sequence	3981..4841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	DAQDEU010000047.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308512-rid18743113.denovo.047, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	DAQDEU010000101.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308512-rid18743113.guided.081, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	DAQDEU010000070.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308512-rid18743113.denovo.073, whole genome shotgun sequence	2248..3063	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDEU010000099.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308512-rid18743113.guided.072, whole genome shotgun sequence	5003..5818	Sulfamethoxazole	AY034138	tet(A)	100	1226/1275	DAQDEU010000085.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308512-rid18743113.denovo.092, whole genome shotgun sequence	692..1917	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	DAQDEU010000102.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308512-rid18743113.guided.084, whole genome shotgun sequence	788..1987	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	DAQDEU010000103.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308512-rid18743113.guided.091, whole genome shotgun sequence	713..1987	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	DAQDEU010000047.1 TPA_asm: Salmonella enterica subsp. enterica strain Anatum SAMN36308512-rid18743113.denovo.047, whole genome shotgun sequence	11449..11699																																																						avrA	DAQDEU010000002.1	93997..94866	99.54	870	0						
GCA_032578335.1_PDT001811537.1_genomic.fna	Salmonella_enterica	0.5192	231.818 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQPZ010000001.1 Salmonella enterica strain PNUSAS361568 SAMN36357803-rid18742893.denovo.01, whole genome shotgun sequence	486109..486546	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQPZ010000047.1 Salmonella enterica strain PNUSAS361568 SAMN36357803-rid18742893.guided.34, whole genome shotgun sequence	6577..7014	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNQPZ010000004.1 Salmonella enterica strain PNUSAS361568 SAMN36357803-rid18742893.denovo.04, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNQPZ010000045.1 Salmonella enterica strain PNUSAS361568 SAMN36357803-rid18742893.guided.31, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQPZ010000003.1	39463..40332	99.195	870	0						
GCA_032579955.1_PDT001811497.1_genomic.fna	Salmonella_enterica	0.5211	406.452 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQQY010000001.1 Salmonella enterica strain PNUSAS361430 SAMN36357282-rid18742603.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQQY010000028.1 Salmonella enterica strain PNUSAS361430 SAMN36357282-rid18742603.guided.20, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQQY010000019.1 Salmonella enterica strain PNUSAS361430 SAMN36357282-rid18742603.denovo.21, whole genome shotgun sequence	6813..7455	enterobacteriales	IncFII(S)	100	262 / 262	ABNQQY010000021.1 Salmonella enterica strain PNUSAS361430 SAMN36357282-rid18742603.denovo.24, whole genome shotgun sequence	3278..3539																																																avrA	ABNQQY010000002.1	585354..586223	99.54	870	0						
GCA_032579975.1_PDT001811495.1_genomic.fna	Salmonella_enterica	0.5203	529.248 KB	4	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNQRA010000001.1 Salmonella enterica strain PNUSAS361567 SAMN36357329-rid18742583.denovo.01, whole genome shotgun sequence	543058..543495	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNQRA010000026.1 Salmonella enterica strain PNUSAS361567 SAMN36357329-rid18742583.guided.18, whole genome shotgun sequence	5080..5517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQRA010000002.1	600572..601441	99.425	870	0						
GCA_032580095.1_PDT001811493.1_genomic.fna	Salmonella_enterica	0.5209	217.803 KB	8	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQRC010000013.1 Salmonella enterica strain PNUSAS361527 SAMN36357328-rid18742563.denovo.13, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQRC010000063.1 Salmonella enterica strain PNUSAS361527 SAMN36357328-rid18742563.guided.25, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNQRC010000023.1 Salmonella enterica strain PNUSAS361527 SAMN36357328-rid18742563.denovo.23, whole genome shotgun sequence	34957..35490																																																						avrA	ABNQRC010000001.1	39545..40411	98.851	870	0						
GCA_032580115.1_PDT001811496.1_genomic.fna	Salmonella_enterica	0.521	397.494 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQQZ010000002.1 Salmonella enterica strain PNUSAS361427 SAMN36357287-rid18742593.denovo.02, whole genome shotgun sequence	77774..78211	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNQQZ010000040.1 Salmonella enterica strain PNUSAS361427 SAMN36357287-rid18742593.guided.16, whole genome shotgun sequence	12038..12475	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.91	132 / 131	ABNQQZ010000021.1 Salmonella enterica strain PNUSAS361427 SAMN36357287-rid18742593.denovo.24, whole genome shotgun sequence	5384..5514	enterobacteriales	Col440I	94.74	114 / 114	ABNQQZ010000024.1 Salmonella enterica strain PNUSAS361427 SAMN36357287-rid18742593.denovo.27, whole genome shotgun sequence	2725..2838																																																avrA	ABNQQZ010000003.1	183135..184004	98.966	870	0						
GCA_032580195.1_PDT001811490.1_genomic.fna	Salmonella_enterica	0.521	245.651 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQRF010000004.1 Salmonella enterica strain PNUSAS361429 SAMN36357285-rid18743333.denovo.04, whole genome shotgun sequence	302465..302902	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQRF010000026.1 Salmonella enterica strain PNUSAS361429 SAMN36357285-rid18743333.denovo.28, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQRF010000026.1 Salmonella enterica strain PNUSAS361429 SAMN36357285-rid18743333.denovo.28, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNQRF010000055.1 Salmonella enterica strain PNUSAS361429 SAMN36357285-rid18743333.guided.27, whole genome shotgun sequence	8088..8525	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQRF010000058.1 Salmonella enterica strain PNUSAS361429 SAMN36357285-rid18743333.guided.48, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQRF010000058.1 Salmonella enterica strain PNUSAS361429 SAMN36357285-rid18743333.guided.48, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNQRF010000026.1 Salmonella enterica strain PNUSAS361429 SAMN36357285-rid18743333.denovo.28, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQRF010000060.1 Salmonella enterica strain PNUSAS361429 SAMN36357285-rid18743333.guided.53, whole genome shotgun sequence	363..1202	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQRF010000026.1 Salmonella enterica strain PNUSAS361429 SAMN36357285-rid18743333.denovo.28, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQRF010000057.1 Salmonella enterica strain PNUSAS361429 SAMN36357285-rid18743333.guided.35, whole genome shotgun sequence	3921..5120	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNQRF010000037.1 Salmonella enterica strain PNUSAS361429 SAMN36357285-rid18743333.denovo.41, whole genome shotgun sequence	500..973	Trimethoprim	AF393510	dfrA14	100	474/474	ABNQRF010000059.1 Salmonella enterica strain PNUSAS361429 SAMN36357285-rid18743333.guided.50, whole genome shotgun sequence	178..651	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQRF010000030.1 Salmonella enterica strain PNUSAS361429 SAMN36357285-rid18743333.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABNQRF010000003.1	149828..150697	99.655	870	0						
GCA_032580295.1_PDT001811486.1_genomic.fna	Salmonella_enterica	0.5218	436.079 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQRH010000003.1 Salmonella enterica strain PNUSAS361434 SAMN36357288-rid18742523.denovo.03, whole genome shotgun sequence	262757..263194	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNQRH010000025.1 Salmonella enterica strain PNUSAS361434 SAMN36357288-rid18742523.guided.20, whole genome shotgun sequence	1879..2316	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQRH010000001.1	562103..562973	99.656	871	0						
GCA_032580355.1_PDT001811485.1_genomic.fna	Salmonella_enterica	0.5215	370.164 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQRI010000001.1 Salmonella enterica strain PNUSAS361432 SAMN36357284-rid18742513.denovo.01, whole genome shotgun sequence	636730..637167	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQRI010000027.1 Salmonella enterica strain PNUSAS361432 SAMN36357284-rid18742513.guided.22, whole genome shotgun sequence	8844..9281	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQRI010000017.1	45080..45950	99.196	871	0						
GCA_032580375.1_PDT001811484.1_genomic.fna	Salmonella_enterica	0.5231	392.577 KB	4	aroC_140,dnaN_105,hemD_85,hisD_93,purE_14,sucA_10,thrA_3	440	35:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col440I,ColRNAI	aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_85	hisD	100	100	hisD_93	purE	100	100	purE_14	sucA	100	100	sucA_10	thrA	100	100	thrA_3	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQRJ010000001.1 Salmonella enterica strain PNUSAS361433 SAMN36357286-rid18742503.denovo.01, whole genome shotgun sequence	453893..454330	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQRJ010000038.1 Salmonella enterica strain PNUSAS361433 SAMN36357286-rid18742503.guided.22, whole genome shotgun sequence	20566..21003	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNQRJ010000028.1 Salmonella enterica strain PNUSAS361433 SAMN36357286-rid18742503.denovo.31, whole genome shotgun sequence	2420..2550	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNQRJ010000033.1 Salmonella enterica strain PNUSAS361433 SAMN36357286-rid18742503.denovo.36, whole genome shotgun sequence	749..879		enterobacteriales	Col440I	95.61	114 / 114	ABNQRJ010000029.1 Salmonella enterica strain PNUSAS361433 SAMN36357286-rid18742503.denovo.32, whole genome shotgun sequence	645..758		enterobacteriales	ColRNAI	90.83	109 / 130	ABNQRJ010000023.1 Salmonella enterica strain PNUSAS361433 SAMN36357286-rid18742503.denovo.26, whole genome shotgun sequence	1010..1118																																													
GCA_032584895.1_PDT001811388.1_genomic.fna	Salmonella_enterica	0.5204	490.103 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQRP010000001.1 Salmonella enterica strain PNUSAS361428 SAMN36357281-rid18741533.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQRP010000024.1 Salmonella enterica strain PNUSAS361428 SAMN36357281-rid18741533.guided.15, whole genome shotgun sequence	26092..26529	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQRP010000016.1 Salmonella enterica strain PNUSAS361428 SAMN36357281-rid18741533.denovo.18, whole genome shotgun sequence	6784..7426	enterobacteriales	IncX1	98.93	374 / 374	ABNQRP010000012.1 Salmonella enterica strain PNUSAS361428 SAMN36357281-rid18741533.denovo.13, whole genome shotgun sequence	32011..32384																																																avrA	ABNQRP010000002.1	553684..554553	99.54	870	0						
GCA_032585015.1_PDT001811202.1_genomic.fna	Salmonella_enterica	0.5203	486.048 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	3	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1D,blaTEM-1D,tet(A),tet(A)	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQRQ010000001.1 Salmonella enterica strain PNUSAS361494 SAMN36357068-rid18741483.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQRQ010000033.1 Salmonella enterica strain PNUSAS361494 SAMN36357068-rid18741483.guided.24, whole genome shotgun sequence	8491..8928	Amikacin, Tobramycin	NC_003197	blaTEM-1D	100	861/861	ABNQRQ010000016.1 Salmonella enterica strain PNUSAS361494 SAMN36357068-rid18741483.denovo.16, whole genome shotgun sequence	43427..44287	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AF188200	blaTEM-1D	100	861/861	ABNQRQ010000031.1 Salmonella enterica strain PNUSAS361494 SAMN36357068-rid18741483.guided.21, whole genome shotgun sequence	16579..17439	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AF188200	tet(A)	99.92	1200/1200	ABNQRQ010000025.1 Salmonella enterica strain PNUSAS361494 SAMN36357068-rid18741483.denovo.30, whole genome shotgun sequence	1629..2828	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNQRQ010000035.1 Salmonella enterica strain PNUSAS361494 SAMN36357068-rid18741483.guided.29, whole genome shotgun sequence	1091..2290	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQRQ010000021.1 Salmonella enterica strain PNUSAS361494 SAMN36357068-rid18741483.denovo.22, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNQRQ010000022.1 Salmonella enterica strain PNUSAS361494 SAMN36357068-rid18741483.denovo.26, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.94	377 / 377	ABNQRQ010000016.1 Salmonella enterica strain PNUSAS361494 SAMN36357068-rid18741483.denovo.16, whole genome shotgun sequence	4398..4774																																									avrA	ABNQRQ010000006.1	175197..176066	99.54	870	0						
GCA_032585035.1_PDT001811203.1_genomic.fna	Salmonella_enterica	0.5214	122.043 KB	13	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNQRR010000007.1 Salmonella enterica strain PNUSAS361507 SAMN36357090-rid18741493.denovo.007, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNQRR010000105.1 Salmonella enterica strain PNUSAS361507 SAMN36357090-rid18741493.guided.062, whole genome shotgun sequence	7839..8276	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABNQRR010000032.1 Salmonella enterica strain PNUSAS361507 SAMN36357090-rid18741493.denovo.032, whole genome shotgun sequence	43514..43775																																																						avrA	ABNQRR010000004.1	93997..94866	98.851	870	0						
GCA_032585095.1_PDT001811201.1_genomic.fna	Salmonella_enterica	0.5213	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQRS010000001.1 Salmonella enterica strain PNUSAS361497 SAMN36357076-rid18741473.denovo.01, whole genome shotgun sequence	774369..774806	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQRS010000024.1 Salmonella enterica strain PNUSAS361497 SAMN36357076-rid18741473.guided.17, whole genome shotgun sequence	8050..8487	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQRS010000016.1 Salmonella enterica strain PNUSAS361497 SAMN36357076-rid18741473.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNQRS010000017.1 Salmonella enterica strain PNUSAS361497 SAMN36357076-rid18741473.denovo.19, whole genome shotgun sequence	3402..3663																																																avrA	ABNQRS010000002.1	553624..554493	99.54	870	0						
GCA_032585135.1_PDT001811200.1_genomic.fna	Salmonella_enterica	0.5182	238.811 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	13	aac(6')-Iaa,aadA1,aadA1,aadA5,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA5,aph(6)-Id,aph(3'')-Ib,aadA1,aadA1,blaTEM-1B,blaTEM-1B,lnu(F),lnu(F),floR,floR,qnrB19,qnrB19,sul2,sul2,tet(B),tet(A),tet(B),tet(A),dfrA17,dfrA17	0		4	Col(pHAD28),IncFII(29),IncHI2,IncHI2A	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQRU010000001.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aadA1	99.87	792/792	ABNQRU010000039.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.42, whole genome shotgun sequence	4820..5611	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	ABNQRU010000039.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.42, whole genome shotgun sequence	4820..5611	Spectinomycin, Streptomycin	JQ414041	aadA5	100	789/789	ABNQRU010000049.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.53, whole genome shotgun sequence	798..1586	Spectinomycin, Streptomycin	AF137361	aph(6)-Id	100	837/837	ABNQRU010000051.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.57, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNQRU010000051.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.57, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNQRU010000071.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.guided.27, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aadA5	100	789/789	ABNQRU010000075.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.guided.55, whole genome shotgun sequence	3229..4017	Spectinomycin, Streptomycin	AF137361	aph(6)-Id	100	837/837	ABNQRU010000076.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.guided.56, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNQRU010000076.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.guided.56, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	aadA1	99.87	792/792	ABNQRU010000080.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.guided.70, whole genome shotgun sequence	11..802	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	ABNQRU010000080.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.guided.70, whole genome shotgun sequence	11..802	Spectinomycin, Streptomycin	JQ414041	blaTEM-1B	100	861/861	ABNQRU010000060.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.69, whole genome shotgun sequence	470..1330	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNQRU010000081.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.guided.72, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	lnu(F)	100	822/822	ABNQRU010000039.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.42, whole genome shotgun sequence	5743..6564	Lincomycin	EU118119	lnu(F)	100	822/822	ABNQRU010000080.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.guided.70, whole genome shotgun sequence	934..1755	Lincomycin	EU118119	floR	98.19	1214/1215	ABNQRU010000038.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.41, whole genome shotgun sequence	3579..4792	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNQRU010000078.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.guided.63, whole genome shotgun sequence	1185..2398	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNQRU010000056.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.64, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNQRU010000079.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.guided.68, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABNQRU010000051.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.57, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNQRU010000076.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.guided.56, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNQRU010000035.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.37, whole genome shotgun sequence	10138..11343	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1275/1275	ABNQRU010000038.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.41, whole genome shotgun sequence	1704..2978	Doxycycline, Tetracycline	AF534183	tet(B)	100	1206/1206	ABNQRU010000073.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.guided.38, whole genome shotgun sequence	9820..11025	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1275/1275	ABNQRU010000077.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.guided.62, whole genome shotgun sequence	1745..3019	Doxycycline, Tetracycline	AF534183	dfrA17	100	474/474	ABNQRU010000049.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.53, whole genome shotgun sequence	1717..2190	Trimethoprim	FJ460238	dfrA17	100	474/474	ABNQRU010000075.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.guided.55, whole genome shotgun sequence	2625..3098	Trimethoprim	FJ460238																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	100	131 / 131	ABNQRU010000056.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.64, whole genome shotgun sequence	1150..1280	enterobacteriales	IncFII(29)	96.91	259 / 259	ABNQRU010000040.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.43, whole genome shotgun sequence	3353..3611		enterobacteriales	IncHI2	100	327 / 327	ABNQRU010000018.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.18, whole genome shotgun sequence	77484..77810		enterobacteriales	IncHI2A	99.52	630 / 630	ABNQRU010000042.1 Salmonella enterica strain PNUSAS361487 SAMN36357073-rid18741463.denovo.46, whole genome shotgun sequence	1172..1801																																		avrA	ABNQRU010000002.1	540746..541615	99.885	870	0						
GCA_032585175.1_PDT001811199.1_genomic.fna	Salmonella_enterica	0.5227	375.633 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQRT010000001.1 Salmonella enterica strain PNUSAS361498 SAMN36357077-rid18741453.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQRT010000032.1 Salmonella enterica strain PNUSAS361498 SAMN36357077-rid18741453.guided.24, whole genome shotgun sequence	5019..5456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQRT010000003.1	150288..151157	99.655	870	0						
GCA_032585235.1_PDT001811198.1_genomic.fna	Salmonella_enterica	0.5209	259.546 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQRV010000001.1 Salmonella enterica strain PNUSAS361489 SAMN36357071-rid18741443.denovo.01, whole genome shotgun sequence	477368..477805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQRV010000033.1 Salmonella enterica strain PNUSAS361489 SAMN36357071-rid18741443.guided.27, whole genome shotgun sequence	791..1228	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQRV010000012.1	140159..141027	99.195	870	0						
GCA_032585255.1_PDT001811197.1_genomic.fna	Salmonella_enterica	0.5224	648.546 KB	2	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQRW010000001.1 Salmonella enterica strain PNUSAS361492 SAMN36357066-rid18741433.denovo.01, whole genome shotgun sequence	1108124..1108561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNQRW010000022.1 Salmonella enterica strain PNUSAS361492 SAMN36357066-rid18741433.guided.16, whole genome shotgun sequence	3436..3873	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNQRW010000002.1	553810..554679	99.77	870	0						
GCA_032585275.1_PDT001811196.1_genomic.fna	Salmonella_enterica	0.5221	447.299 KB	3	aroC_81,dnaN_5,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	362	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_5	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNQRX010000001.1 Salmonella enterica strain PNUSAS361501 SAMN36357070-rid18741423.denovo.01, whole genome shotgun sequence	413517..413954	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNQRX010000020.1 Salmonella enterica strain PNUSAS361501 SAMN36357070-rid18741423.guided.17, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQRX010000006.1	146812..147681	99.31	870	0						
GCA_032585315.1_PDT001811195.1_genomic.fna	Salmonella_enterica	0.5204	231.228 KB	6	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQRZ010000002.1 Salmonella enterica strain PNUSAS361488 SAMN36357069-rid18741413.denovo.02, whole genome shotgun sequence	513036..513473	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQRZ010000038.1 Salmonella enterica strain PNUSAS361488 SAMN36357069-rid18741413.guided.30, whole genome shotgun sequence	13674..14111	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNQRZ010000025.1 Salmonella enterica strain PNUSAS361488 SAMN36357069-rid18741413.denovo.25, whole genome shotgun sequence	34958..35491																																																						avrA	ABNQRZ010000001.1	181200..182069	99.31	870	0						
GCA_032585335.1_PDT001811193.1_genomic.fna	Salmonella_enterica	0.5214	489.16 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQRY010000001.1 Salmonella enterica strain PNUSAS361496 SAMN36357074-rid18741393.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQRY010000021.1 Salmonella enterica strain PNUSAS361496 SAMN36357074-rid18741393.guided.16, whole genome shotgun sequence	12014..12451	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABNQRY010000022.1 Salmonella enterica strain PNUSAS361496 SAMN36357074-rid18741393.guided.17, whole genome shotgun sequence	12014..12451	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQRY010000016.1 Salmonella enterica strain PNUSAS361496 SAMN36357074-rid18741393.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNQRY010000017.1 Salmonella enterica strain PNUSAS361496 SAMN36357074-rid18741393.denovo.21, whole genome shotgun sequence	3392..3653																																																avrA	ABNQRY010000002.1	553530..554399	99.54	870	0						
GCA_032585395.1_PDT001811192.1_genomic.fna	Salmonella_enterica	0.5198	154.992 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNQSB010000009.1 Salmonella enterica strain PNUSAS361491 SAMN36357065-rid18741383.denovo.09, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNQSB010000059.1 Salmonella enterica strain PNUSAS361491 SAMN36357065-rid18741383.guided.40, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032585435.1_PDT001811189.1_genomic.fna	Salmonella_enterica	0.5202	283.737 KB	5	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNQSC010000002.1 Salmonella enterica strain PNUSAS361499 SAMN36357049-rid18741353.denovo.02, whole genome shotgun sequence	476972..477409	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNQSC010000030.1 Salmonella enterica strain PNUSAS361499 SAMN36357049-rid18741353.guided.22, whole genome shotgun sequence	8839..9276	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQSC010000001.1	600572..601441	99.425	870	0						
GCA_032585515.1_PDT001811194.1_genomic.fna	Salmonella_enterica	0.5214	406.315 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQSA010000001.1 Salmonella enterica strain PNUSAS361502 SAMN36357051-rid18741403.denovo.01, whole genome shotgun sequence	542759..543196	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQSA010000031.1 Salmonella enterica strain PNUSAS361502 SAMN36357051-rid18741403.guided.28, whole genome shotgun sequence	1717..2154	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQSA010000021.1 Salmonella enterica strain PNUSAS361502 SAMN36357051-rid18741403.denovo.21, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNQSA010000023.1 Salmonella enterica strain PNUSAS361502 SAMN36357051-rid18741403.denovo.24, whole genome shotgun sequence	3402..3663																																																avrA	ABNQSA010000002.1	553636..554505	99.54	870	0						
GCA_032586595.1_PDT001811183.1_genomic.fna	Salmonella_enterica	0.5214	406.34 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQSI010000001.1 Salmonella enterica strain PNUSAS361451 SAMN36355000-rid18741293.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQSI010000024.1 Salmonella enterica strain PNUSAS361451 SAMN36355000-rid18741293.guided.17, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQSI010000017.1 Salmonella enterica strain PNUSAS361451 SAMN36355000-rid18741293.denovo.19, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNQSI010000018.1 Salmonella enterica strain PNUSAS361451 SAMN36355000-rid18741293.denovo.21, whole genome shotgun sequence	3403..3664																																																avrA	ABNQSI010000002.1	553635..554504	99.54	870	0						
GCA_032586615.1_PDT001811181.1_genomic.fna	Salmonella_enterica	0.5214	492.468 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQSK010000001.1 Salmonella enterica strain PNUSAS361450 SAMN36355002-rid18741273.denovo.01, whole genome shotgun sequence	780652..781089	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQSK010000020.1 Salmonella enterica strain PNUSAS361450 SAMN36355002-rid18741273.guided.13, whole genome shotgun sequence	32242..32679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQSK010000012.1 Salmonella enterica strain PNUSAS361450 SAMN36355002-rid18741273.denovo.12, whole genome shotgun sequence	40563..41205	enterobacteriales	IncFII(S)	100	262 / 262	ABNQSK010000015.1 Salmonella enterica strain PNUSAS361450 SAMN36355002-rid18741273.denovo.18, whole genome shotgun sequence	3387..3648																																																avrA	ABNQSK010000002.1	553678..554547	99.54	870	0						
GCA_032586635.1_PDT001811182.1_genomic.fna	Salmonella_enterica	0.5212	438.612 KB	4	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNQSJ010000002.1 Salmonella enterica strain PNUSAS361455 SAMN36354945-rid18741283.denovo.02, whole genome shotgun sequence	328726..329163	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNQSJ010000026.1 Salmonella enterica strain PNUSAS361455 SAMN36354945-rid18741283.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNQSJ010000001.1	571961..572830	99.31	870	0						
GCA_032586735.1_PDT001811180.1_genomic.fna	Salmonella_enterica	0.521	702.403 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQSL010000001.1 Salmonella enterica strain PNUSAS361454 SAMN36354997-rid18741263.denovo.01, whole genome shotgun sequence	690159..690596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNQSL010000028.1 Salmonella enterica strain PNUSAS361454 SAMN36354997-rid18741263.guided.17, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQSL010000002.1	589214..590082	99.655	870	0						
GCA_032586755.1_PDT001811178.1_genomic.fna	Salmonella_enterica	0.5223	65.541 KB	23	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	12	aac(6')-Iaa,rmtE,aph(3')-Ia,aadA2b,aac(6')-Iaa,rmtE,aph(3')-Ia,aadA2b,blaCARB-2,blaCARB-2,floR,floR,qnrB19,qnrB19,sul1,tet(A),tet(M),tet(G),tet(A),tet(G),tet(M),dfrA34,dfrA34	0		3	Col(pHAD28),Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQSN010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.denovo.002, whole genome shotgun sequence	83746..84183	Amikacin, Tobramycin	NC_003197	rmtE	100	822/822	ABNQSN010000081.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.denovo.082, whole genome shotgun sequence	13467..14288	Amikacin, Gentamicin, Tobramycin, Kanamycin, Streptomycin	GU201947	aph(3')-Ia	100	816/816	ABNQSN010000081.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.denovo.082, whole genome shotgun sequence	10675..11490	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EU722351	aadA2b	99.87	780/780	ABNQSN010000125.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.denovo.138, whole genome shotgun sequence	40..819	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNQSN010000132.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.guided.076, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	rmtE	100	822/822	ABNQSN010000135.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.guided.095, whole genome shotgun sequence	3733..4554	Amikacin, Gentamicin, Tobramycin, Kanamycin, Streptomycin	GU201947	aph(3')-Ia	100	816/816	ABNQSN010000135.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.guided.095, whole genome shotgun sequence	6531..7346	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EU722351	aadA2b	99.87	780/780	ABNQSN010000144.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.guided.134, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNQSN010000118.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.denovo.130, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNQSN010000143.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.guided.129, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNQSN010000095.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.denovo.100, whole genome shotgun sequence	5159..6373	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNQSN010000141.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.guided.120, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNQSN010000109.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.denovo.117, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNQSN010000139.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.guided.116, whole genome shotgun sequence	2084..2728	Ciprofloxacin	EU432277	sul1	100	840/840	ABNQSN010000142.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.guided.126, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQSN010000081.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.denovo.082, whole genome shotgun sequence	5647..6846	Doxycycline, Tetracycline	AJ517790	tet(M)	99.17	1920/1920	ABNQSN010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.denovo.097, whole genome shotgun sequence	242..2161	Doxycycline, Tetracycline, Minocycline	U58985	tet(G)	100	1176/1176	ABNQSN010000095.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.denovo.100, whole genome shotgun sequence	3047..4222	Doxycycline, Tetracycline	AF133140	tet(A)	100	1200/1200	ABNQSN010000136.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.guided.098, whole genome shotgun sequence	4680..5879	Doxycycline, Tetracycline	AJ517790	tet(G)	100	1176/1176	ABNQSN010000138.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.guided.111, whole genome shotgun sequence	376..1551	Doxycycline, Tetracycline	AF133140	tet(M)	99.17	1920/1920	ABNQSN010000140.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.guided.119, whole genome shotgun sequence	151..2070	Doxycycline, Tetracycline, Minocycline	U58985	dfrA34	100	588/588	ABNQSN010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.denovo.097, whole genome shotgun sequence	5600..6187	Trimethoprim	JYRF01000065	dfrA34	100	588/588	ABNQSN010000137.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.guided.107, whole genome shotgun sequence	2332..2919	Trimethoprim	JYRF01000065																																																																																																																																																																																																																																																																																																																											enterobacteriales	Col(pHAD28)	100	131 / 131	ABNQSN010000109.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.denovo.117, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNQSN010000139.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.guided.116, whole genome shotgun sequence	1428..1558		enterobacteriales	IncFIB(S)	100	643 / 643	ABNQSN010000053.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.denovo.053, whole genome shotgun sequence	24665..25307		enterobacteriales	IncFII(S)	100	262 / 262	ABNQSN010000053.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323229 SAMN36356000-rid18741243.denovo.053, whole genome shotgun sequence	9325..9586																																		avrA	ABNQSN010000005.1	104999..105868	99.885	870	0						
GCA_032586775.1_PDT001811175.1_genomic.fna	Salmonella_enterica	0.5216	76.417 KB	21	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQSO010000015.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.denovo.015, whole genome shotgun sequence	12400..12837	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQSO010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.denovo.047, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNQSO010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.denovo.047, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNQSO010000108.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.guided.058, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNQSO010000108.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.guided.058, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNQSO010000110.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.guided.080, whole genome shotgun sequence	4035..4472	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNQSO010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.denovo.047, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNQSO010000108.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.guided.058, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABNQSO010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.denovo.047, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNQSO010000112.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.guided.095, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNQSO010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.denovo.047, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNQSO010000108.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.guided.058, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNQSO010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.denovo.047, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNQSO010000108.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.guided.058, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABNQSO010000051.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.denovo.051, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNQSO010000032.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.denovo.032, whole genome shotgun sequence	20403..20662		enterobacteriales	IncX1	98.66	374 / 374	ABNQSO010000081.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12323230 SAMN36356460-rid18741213.denovo.084, whole genome shotgun sequence	8996..9369																																									avrA	ABNQSO010000002.1	148147..149015	99.54	870	0						
GCA_032586815.1_PDT001811174.1_genomic.fna	Salmonella_enterica	0.5226	64.988 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	6	aadA2b,aac(6')-Iaa,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aadA2b	99.87	780/780	ABNQSQ010000029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323231 SAMN36356461-rid18741203.denovo.029, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNQSQ010000059.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323231 SAMN36356461-rid18741203.denovo.059, whole genome shotgun sequence	12525..12962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNQSQ010000156.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323231 SAMN36356461-rid18741203.guided.077, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNQSQ010000161.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323231 SAMN36356461-rid18741203.guided.151, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNQSQ010000108.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323231 SAMN36356461-rid18741203.denovo.111, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNQSQ010000160.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323231 SAMN36356461-rid18741203.guided.144, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNQSQ010000108.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323231 SAMN36356461-rid18741203.denovo.111, whole genome shotgun sequence	6603..7817	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNQSQ010000158.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323231 SAMN36356461-rid18741203.guided.117, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNQSQ010000159.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323231 SAMN36356461-rid18741203.guided.135, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNQSQ010000108.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323231 SAMN36356461-rid18741203.denovo.111, whole genome shotgun sequence	4491..5666	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNQSQ010000158.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323231 SAMN36356461-rid18741203.guided.117, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	Col440I	92.04	113 / 114	ABNQSQ010000129.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323231 SAMN36356461-rid18741203.denovo.133, whole genome shotgun sequence	1334..1446	enterobacteriales	IncFIB(S)	100	643 / 643	ABNQSQ010000105.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323231 SAMN36356461-rid18741203.denovo.108, whole genome shotgun sequence	6837..7479		enterobacteriales	IncFII(S)	100	262 / 262	ABNQSQ010000102.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323231 SAMN36356461-rid18741203.denovo.105, whole genome shotgun sequence	9318..9579																																									avrA	ABNQSQ010000002.1	101000..101869	99.885	870	0						
GCA_032586885.1_PDT001811173.1_genomic.fna	Salmonella_enterica	0.5223	80.021 KB	19	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQSR010000023.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323234 SAMN36356464-rid18741193.denovo.023, whole genome shotgun sequence	18128..18565	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQSR010000123.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323234 SAMN36356464-rid18741193.guided.041, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQSR010000081.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323234 SAMN36356464-rid18741193.denovo.083, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNQSR010000083.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323234 SAMN36356464-rid18741193.denovo.085, whole genome shotgun sequence	3404..3665																																																avrA	ABNQSR010000005.1	81813..82682	99.54	870	0						
GCA_032586915.1_PDT001811176.1_genomic.fna	Salmonella_enterica	0.521	412.183 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQSP010000001.1 Salmonella enterica strain PNUSAS361457 SAMN36354951-rid18741223.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQSP010000026.1 Salmonella enterica strain PNUSAS361457 SAMN36354951-rid18741223.guided.15, whole genome shotgun sequence	32327..32764	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQSP010000018.1 Salmonella enterica strain PNUSAS361457 SAMN36354951-rid18741223.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNQSP010000015.1 Salmonella enterica strain PNUSAS361457 SAMN36354951-rid18741223.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABNQSP010000002.1	553635..554504	99.54	870	0						
GCA_032586955.1_PDT001811179.1_genomic.fna	Salmonella_enterica	0.5226	269.483 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQSM010000001.1 Salmonella enterica strain PNUSAS361459 SAMN36354948-rid18741253.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQSM010000038.1 Salmonella enterica strain PNUSAS361459 SAMN36354948-rid18741253.guided.27, whole genome shotgun sequence	9650..10087	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQSM010000002.1	149828..150697	99.655	870	0						
GCA_032586975.1_PDT001811172.1_genomic.fna	Salmonella_enterica	0.5209	81.663 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQSS010000010.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323227 SAMN36356001-rid18741183.denovo.010, whole genome shotgun sequence	52275..52712	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQSS010000135.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323227 SAMN36356001-rid18741183.guided.067, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNQSS010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323227 SAMN36356001-rid18741183.denovo.075, whole genome shotgun sequence	4356..4615	enterobacteriales	IncX1	100	373 / 373	ABNQSS010000103.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323227 SAMN36356001-rid18741183.denovo.106, whole genome shotgun sequence	2153..2525																																																avrA	ABNQSS010000037.1	39484..40353	99.655	870	0						
GCA_032587015.1_PDT001811171.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQST010000001.1 Salmonella enterica strain PNUSAS361460 SAMN36354949-rid18741173.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQST010000023.1 Salmonella enterica strain PNUSAS361460 SAMN36354949-rid18741173.guided.15, whole genome shotgun sequence	32327..32764	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQST010000014.1 Salmonella enterica strain PNUSAS361460 SAMN36354949-rid18741173.denovo.14, whole genome shotgun sequence	40537..41179	enterobacteriales	IncFII(S)	100	262 / 262	ABNQST010000018.1 Salmonella enterica strain PNUSAS361460 SAMN36354949-rid18741173.denovo.21, whole genome shotgun sequence	3404..3665																																																avrA	ABNQST010000002.1	553635..554504	99.54	870	0						
GCA_032587075.1_PDT001811170.1_genomic.fna	Salmonella_enterica	0.5215	256.199 KB	7	aroC_83,dnaN_46,hemD_25,hisD_148,purE_33,sucA_23,thrA_63	450	13:d:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncI(Gamma)	aroC	100	100	aroC_83	dnaN	100	100	dnaN_46	hemD	100	100	hemD_25	hisD	100	100	hisD_148	purE	100	100	purE_33	sucA	100	100	sucA_23	thrA	100	100	thrA_63	13	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Telelkebir		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNQSU010000002.1 Salmonella enterica strain PNUSAS361452 SAMN36354998-rid18741163.denovo.02, whole genome shotgun sequence	37902..38339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNQSU010000043.1 Salmonella enterica strain PNUSAS361452 SAMN36354998-rid18741163.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNQSU010000004.1 Salmonella enterica strain PNUSAS361452 SAMN36354998-rid18741163.denovo.04, whole genome shotgun sequence	173525..173947	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNQSU010000044.1 Salmonella enterica strain PNUSAS361452 SAMN36354998-rid18741163.guided.29, whole genome shotgun sequence	14148..14570	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI(Gamma)	97.81	137 / 141	ABNQSU010000021.1 Salmonella enterica strain PNUSAS361452 SAMN36354998-rid18741163.denovo.21, whole genome shotgun sequence	69865..70001																																																																	
GCA_032587135.1_PDT001811168.1_genomic.fna	Salmonella_enterica	0.5213	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQSY010000001.1 Salmonella enterica strain PNUSAS361453 SAMN36354946-rid18741143.denovo.01, whole genome shotgun sequence	573934..574371	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQSY010000026.1 Salmonella enterica strain PNUSAS361453 SAMN36354946-rid18741143.denovo.27, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQSY010000026.1 Salmonella enterica strain PNUSAS361453 SAMN36354946-rid18741143.denovo.27, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNQSY010000050.1 Salmonella enterica strain PNUSAS361453 SAMN36354946-rid18741143.guided.24, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQSY010000053.1 Salmonella enterica strain PNUSAS361453 SAMN36354946-rid18741143.guided.37, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQSY010000053.1 Salmonella enterica strain PNUSAS361453 SAMN36354946-rid18741143.guided.37, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNQSY010000039.1 Salmonella enterica strain PNUSAS361453 SAMN36354946-rid18741143.denovo.43, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNQSY010000054.1 Salmonella enterica strain PNUSAS361453 SAMN36354946-rid18741143.guided.44, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNQSY010000026.1 Salmonella enterica strain PNUSAS361453 SAMN36354946-rid18741143.denovo.27, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQSY010000053.1 Salmonella enterica strain PNUSAS361453 SAMN36354946-rid18741143.guided.37, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQSY010000026.1 Salmonella enterica strain PNUSAS361453 SAMN36354946-rid18741143.denovo.27, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQSY010000055.1 Salmonella enterica strain PNUSAS361453 SAMN36354946-rid18741143.guided.47, whole genome shotgun sequence	787..1986	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQSY010000030.1 Salmonella enterica strain PNUSAS361453 SAMN36354946-rid18741143.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABNQSY010000002.1	149828..150697	99.655	870	0						
GCA_032587175.1_PDT001811166.1_genomic.fna	Salmonella_enterica	0.5205	165.445 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col(pHAD28),IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQSX010000002.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323222 SAMN36352991-rid18741123.denovo.02, whole genome shotgun sequence	51914..52351	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQSX010000067.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323222 SAMN36352991-rid18741123.guided.27, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	100	131 / 131	ABNQSX010000061.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323222 SAMN36352991-rid18741123.denovo.65, whole genome shotgun sequence	472..602	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQSX010000046.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323222 SAMN36352991-rid18741123.denovo.49, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABNQSX010000048.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323222 SAMN36352991-rid18741123.denovo.51, whole genome shotgun sequence	3388..3649		enterobacteriales	IncX1	98.93	374 / 374	ABNQSX010000036.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323222 SAMN36352991-rid18741123.denovo.38, whole genome shotgun sequence	9560..9933																																		avrA	ABNQSX010000004.1	62018..62887	99.54	870	0						
GCA_032587195.1_PDT001811165.1_genomic.fna	Salmonella_enterica	0.5225	176.526 KB	9	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNQSW010000001.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323199 SAMN36352992-rid18741113.denovo.01, whole genome shotgun sequence	83154..83591	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNQSW010000053.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12323199 SAMN36352992-rid18741113.guided.37, whole genome shotgun sequence	14325..14762	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQSW010000003.1	95271..96140	99.425	870	0						
GCA_032587255.1_PDT001811164.1_genomic.fna	Salmonella_enterica	0.5207	130.031 KB	11	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col156,ColRNAI,IncI(Gamma)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNQSZ010000001.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323221 SAMN36352990-rid18741103.denovo.01, whole genome shotgun sequence	461306..461743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNQSZ010000077.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323221 SAMN36352990-rid18741103.guided.53, whole genome shotgun sequence	4029..4466	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	ABNQSZ010000062.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323221 SAMN36352990-rid18741103.denovo.65, whole genome shotgun sequence	791..944	enterobacteriales	ColRNAI	90.08	131 / 130	ABNQSZ010000059.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323221 SAMN36352990-rid18741103.denovo.62, whole genome shotgun sequence	3981..4111		enterobacteriales	IncI(Gamma)	100	137 / 141	ABNQSZ010000048.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323221 SAMN36352990-rid18741103.denovo.49, whole genome shotgun sequence	3235..3371																																									avrA	ABNQSZ010000011.1	93878..94747	99.425	870	0						
GCA_032587275.1_PDT001811169.1_genomic.fna	Salmonella_enterica	0.5224	409.464 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNQSV010000001.1 Salmonella enterica strain PNUSAS361458 SAMN36354952-rid18741153.denovo.01, whole genome shotgun sequence	402966..403403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNQSV010000029.1 Salmonella enterica strain PNUSAS361458 SAMN36354952-rid18741153.guided.15, whole genome shotgun sequence	8793..9230	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032587315.1_PDT001811163.1_genomic.fna	Salmonella_enterica	0.5233	143.574 KB	12	aroC_140,dnaN_105,hemD_85,hisD_93,purE_14,sucA_10,thrA_3	440	35:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),ColRNAI,ColpVC	aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_85	hisD	100	100	hisD_93	purE	100	100	purE_14	sucA	100	100	sucA_10	thrA	100	100	thrA_3	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQTA010000024.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS12323197 SAMN36352948-rid18741093.denovo.24, whole genome shotgun sequence	11381..11818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQTA010000076.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS12323197 SAMN36352948-rid18741093.guided.34, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNQTA010000064.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS12323197 SAMN36352948-rid18741093.denovo.67, whole genome shotgun sequence	2567..2697	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNQTA010000069.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS12323197 SAMN36352948-rid18741093.denovo.72, whole genome shotgun sequence	899..1029		enterobacteriales	ColRNAI	90.83	109 / 130	ABNQTA010000054.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS12323197 SAMN36352948-rid18741093.denovo.57, whole genome shotgun sequence	1016..1124		enterobacteriales	ColpVC	98.96	193 / 193	ABNQTA010000067.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS12323197 SAMN36352948-rid18741093.denovo.70, whole genome shotgun sequence	793..985																																													
GCA_032587375.1_PDT001811162.1_genomic.fna	Salmonella_enterica	0.5192	121.871 KB	14	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNQTB010000005.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323198 SAMN36352949-rid18741083.denovo.05, whole genome shotgun sequence	31680..32117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNQTB010000093.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323198 SAMN36352949-rid18741083.guided.43, whole genome shotgun sequence	7319..7756	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNQTB010000066.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323198 SAMN36352949-rid18741083.denovo.69, whole genome shotgun sequence	2209..2339	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNQTB010000067.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323198 SAMN36352949-rid18741083.denovo.70, whole genome shotgun sequence	557..687		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNQTB010000056.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12323198 SAMN36352949-rid18741083.denovo.59, whole genome shotgun sequence	4626..5159																																									avrA	ABNQTB010000039.1	39350..40219	99.54	870	0						
GCA_032587395.1_PDT001811161.1_genomic.fna	Salmonella_enterica	0.5213	401.946 KB	5	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncR,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQTC010000004.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.denovo.04, whole genome shotgun sequence	263659..264096	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNQTC010000029.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.denovo.33, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNQTC010000048.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.guided.25, whole genome shotgun sequence	278..715	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNQTC010000050.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.guided.32, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNQTC010000029.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.denovo.33, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNQTC010000050.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.guided.32, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNQTC010000027.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.denovo.30, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNQTC010000054.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.guided.44, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNQTC010000026.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.denovo.28, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNQTC010000051.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.guided.37, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNQTC010000029.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.denovo.33, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNQTC010000050.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.guided.32, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNQTC010000035.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.denovo.42, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQTC010000053.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.guided.41, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNQTC010000026.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.denovo.28, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNQTC010000052.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.guided.38, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNQTC010000026.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.denovo.28, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNQTC010000052.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.guided.38, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNQTC010000023.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.denovo.24, whole genome shotgun sequence	8402..8652	enterobacteriales	IncX1	94.92	374 / 374	ABNQTC010000017.1 Salmonella enterica strain PNUSAS361409 SAMN36356430-rid18741073.denovo.17, whole genome shotgun sequence	13796..14169																																																avrA	ABNQTC010000002.1	204403..205272	99.77	870	0						
GCA_032587455.1_PDT001811160.1_genomic.fna	Salmonella_enterica	0.5213	146.058 KB	12	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQTD010000025.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323194 SAMN36356431-rid18741063.denovo.25, whole genome shotgun sequence	12518..12955	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQTD010000077.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323194 SAMN36356431-rid18741063.guided.38, whole genome shotgun sequence	21776..22213	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNQTD010000060.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12323194 SAMN36356431-rid18741063.denovo.63, whole genome shotgun sequence	3981..4111																																																						avrA	ABNQTD010000007.1	35267..36136	99.425	870	0						
GCA_032587465.1_PDT001811159.1_genomic.fna	Salmonella_enterica	0.5203	78.486 KB	21	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQTE010000014.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323192 SAMN36356426-rid18741053.denovo.014, whole genome shotgun sequence	87842..88279	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQTE010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323192 SAMN36356426-rid18741053.guided.063, whole genome shotgun sequence	8784..9221	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	100	373 / 373	ABNQTE010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323192 SAMN36356426-rid18741053.denovo.099, whole genome shotgun sequence	2153..2525																																																						avrA	ABNQTE010000039.1	39612..40481	99.655	870	0						
GCA_032587495.1_PDT001811158.1_genomic.fna	Salmonella_enterica	0.5216	363.928 KB	6	aroC_18,dnaN_14,hemD_12,hisD_9,purE_5,sucA_18,thrA_21	36	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_14	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_18	thrA	100	100	thrA_21	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQTG010000003.1 Salmonella enterica strain PNUSAS361408 SAMN36356423-rid18741043.denovo.03, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNQTG010000041.1 Salmonella enterica strain PNUSAS361408 SAMN36356423-rid18741043.guided.28, whole genome shotgun sequence	976..1413	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNQTG010000008.1	174490..175359	99.885	870	0						
GCA_032587535.1_PDT001811157.1_genomic.fna	Salmonella_enterica	0.5217	123.877 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQTF010000020.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323191 SAMN36356424-rid18741033.denovo.20, whole genome shotgun sequence	52264..52701	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNQTF010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323191 SAMN36356424-rid18741033.denovo.65, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQTF010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323191 SAMN36356424-rid18741033.denovo.65, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNQTF010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323191 SAMN36356424-rid18741033.guided.39, whole genome shotgun sequence	36577..37014	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNQTF010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323191 SAMN36356424-rid18741033.guided.68, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQTF010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323191 SAMN36356424-rid18741033.guided.68, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNQTF010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323191 SAMN36356424-rid18741033.denovo.64, whole genome shotgun sequence	3168..4381	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNQTF010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323191 SAMN36356424-rid18741033.guided.73, whole genome shotgun sequence	355..1568	Chloramphenicol, Florfenicol	AF118107	dfrA14	100	474/474	ABNQTF010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323191 SAMN36356424-rid18741033.denovo.62, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNQTF010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323191 SAMN36356424-rid18741033.guided.76, whole genome shotgun sequence	96..569	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQTF010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323191 SAMN36356424-rid18741033.denovo.32, whole genome shotgun sequence	36931..37490																																																						avrA	ABNQTF010000005.1	149873..150742	99.655	870	0						
GCA_032587575.1_PDT001811156.1_genomic.fna	Salmonella_enterica	0.521	231.102 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,tet(A),tet(A)	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQTI010000002.1 Salmonella enterica strain PNUSAS361412 SAMN36356425-rid18741023.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQTI010000036.1 Salmonella enterica strain PNUSAS361412 SAMN36356425-rid18741023.denovo.38, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNQTI010000036.1 Salmonella enterica strain PNUSAS361412 SAMN36356425-rid18741023.denovo.38, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aac(6')-Iaa	99.77	438/438	ABNQTI010000075.1 Salmonella enterica strain PNUSAS361412 SAMN36356425-rid18741023.guided.28, whole genome shotgun sequence	8093..8530	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQTI010000078.1 Salmonella enterica strain PNUSAS361412 SAMN36356425-rid18741023.guided.42, whole genome shotgun sequence	3154..3990	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNQTI010000078.1 Salmonella enterica strain PNUSAS361412 SAMN36356425-rid18741023.guided.42, whole genome shotgun sequence	2351..3154	Streptomycin	AF321551	blaTEM-1A	100	861/861	ABNQTI010000036.1 Salmonella enterica strain PNUSAS361412 SAMN36356425-rid18741023.denovo.38, whole genome shotgun sequence	412..1272	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNQTI010000078.1 Salmonella enterica strain PNUSAS361412 SAMN36356425-rid18741023.guided.42, whole genome shotgun sequence	453..1313	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	ABNQTI010000036.1 Salmonella enterica strain PNUSAS361412 SAMN36356425-rid18741023.denovo.38, whole genome shotgun sequence	7085..8298	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNQTI010000079.1 Salmonella enterica strain PNUSAS361412 SAMN36356425-rid18741023.guided.45, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNQTI010000036.1 Salmonella enterica strain PNUSAS361412 SAMN36356425-rid18741023.denovo.38, whole genome shotgun sequence	1434..2249	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNQTI010000078.1 Salmonella enterica strain PNUSAS361412 SAMN36356425-rid18741023.guided.42, whole genome shotgun sequence	1475..2290	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNQTI010000036.1 Salmonella enterica strain PNUSAS361412 SAMN36356425-rid18741023.denovo.38, whole genome shotgun sequence	5210..6484	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNQTI010000078.1 Salmonella enterica strain PNUSAS361412 SAMN36356425-rid18741023.guided.42, whole genome shotgun sequence	5251..6525	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNQTI010000026.1 Salmonella enterica strain PNUSAS361412 SAMN36356425-rid18741023.denovo.26, whole genome shotgun sequence	15844..15985																																																						avrA	ABNQTI010000004.1	174641..175509	100	869	0						
GCA_032587635.1_PDT001811152.1_genomic.fna	Salmonella_enterica	0.5205	672.486 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	4	aac(6')-Iaa,aac(6')-Iaa,blaSHV-189,blaSHV-105,blaSHV-30,blaSHV-189,blaSHV-105,blaSHV-30	1	parC_p.T57S	1	IncM1	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQTK010000001.1 Salmonella enterica strain PNUSAS361411 SAMN36356428-rid18740983.denovo.01, whole genome shotgun sequence	414575..415012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQTK010000026.1 Salmonella enterica strain PNUSAS361411 SAMN36356428-rid18740983.guided.16, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	blaSHV-189	99.88	861/861	ABNQTK010000013.1 Salmonella enterica strain PNUSAS361411 SAMN36356428-rid18740983.denovo.14, whole genome shotgun sequence	34740..35600	Unknown Beta-lactam	KP050494	blaSHV-105	99.88	861/861	ABNQTK010000013.1 Salmonella enterica strain PNUSAS361411 SAMN36356428-rid18740983.denovo.14, whole genome shotgun sequence	34740..35600	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	FJ194944	blaSHV-30	99.88	861/861	ABNQTK010000013.1 Salmonella enterica strain PNUSAS361411 SAMN36356428-rid18740983.denovo.14, whole genome shotgun sequence	34740..35600	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY661885	blaSHV-189	99.88	861/861	ABNQTK010000028.1 Salmonella enterica strain PNUSAS361411 SAMN36356428-rid18740983.guided.20, whole genome shotgun sequence	1917..2777	Unknown Beta-lactam	KP050494	blaSHV-105	99.88	861/861	ABNQTK010000028.1 Salmonella enterica strain PNUSAS361411 SAMN36356428-rid18740983.guided.20, whole genome shotgun sequence	1917..2777	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	FJ194944	blaSHV-30	99.88	861/861	ABNQTK010000028.1 Salmonella enterica strain PNUSAS361411 SAMN36356428-rid18740983.guided.20, whole genome shotgun sequence	1917..2777	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY661885																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncM1	99.46	739 / 739	ABNQTK010000013.1 Salmonella enterica strain PNUSAS361411 SAMN36356428-rid18740983.denovo.14, whole genome shotgun sequence	40031..40769																																																																	
GCA_032587675.1_PDT001811155.1_genomic.fna	Salmonella_enterica	0.5218	216.535 KB	6	aroC_347,dnaN_394,hemD_78,hisD_496,purE_426,sucA_9,thrA_102	1549	8:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_347	dnaN	100	100	dnaN_394	hemD	100	100	hemD_78	hisD	100	100	hisD_496	purE	100	100	purE_426	sucA	100	100	sucA_9	thrA	100	100	thrA_102	8	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Altona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQTH010000001.1 Salmonella enterica subsp. enterica serovar Altona strain FSIS12323195 SAMN36356433-rid18741013.denovo.01, whole genome shotgun sequence	570975..571412	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQTH010000048.1 Salmonella enterica subsp. enterica serovar Altona strain FSIS12323195 SAMN36356433-rid18741013.guided.17, whole genome shotgun sequence	14305..14742	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQTH010000003.1	500316..501185	99.195	870	0						
GCA_032587695.1_PDT001811153.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQTJ010000001.1 Salmonella enterica strain PNUSAS361419 SAMN36356427-rid18740993.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQTJ010000027.1 Salmonella enterica strain PNUSAS361419 SAMN36356427-rid18740993.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQTJ010000016.1 Salmonella enterica strain PNUSAS361419 SAMN36356427-rid18740993.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNQTJ010000018.1 Salmonella enterica strain PNUSAS361419 SAMN36356427-rid18740993.denovo.21, whole genome shotgun sequence	3395..3656																																																avrA	ABNQTJ010000002.1	553574..554443	99.54	870	0						
GCA_032587855.1_PDT001811145.1_genomic.fna	Salmonella_enterica	0.5211	336.982 KB	5	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNQTQ010000001.1 Salmonella enterica strain PNUSAS361418 SAMN36350528-rid18740913.denovo.01, whole genome shotgun sequence	344893..345330	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNQTQ010000037.1 Salmonella enterica strain PNUSAS361418 SAMN36350528-rid18740913.guided.21, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQTQ010000008.1	95231..96100	99.54	870	0						
GCA_032587885.1_PDT001811144.1_genomic.fna	Salmonella_enterica	0.5222	66.952 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQTP010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323239 SAMN36350522-rid18740903.denovo.001, whole genome shotgun sequence	349966..350403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQTP010000136.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323239 SAMN36350522-rid18740903.guided.072, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQTP010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323239 SAMN36350522-rid18740903.denovo.053, whole genome shotgun sequence	21560..22119																																																						avrA	ABNQTP010000019.1	39430..40299	99.655	870	0						
GCA_032587915.1_PDT001811151.1_genomic.fna	Salmonella_enterica	0.5218	148.698 KB	12	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNQTL010000004.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323193 SAMN36356429-rid18740973.denovo.04, whole genome shotgun sequence	84770..85207	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNQTL010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323193 SAMN36356429-rid18740973.guided.44, whole genome shotgun sequence	15513..15950	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNQTL010000028.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323193 SAMN36356429-rid18740973.denovo.28, whole genome shotgun sequence	7633..7774																																																						avrA	ABNQTL010000008.1	144726..145595	99.31	870	0						
GCA_032587955.1_PDT001811142.1_genomic.fna	Salmonella_enterica	0.5218	61.075 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQTR010000021.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323240 SAMN36350523-rid18740883.denovo.021, whole genome shotgun sequence	15510..15947	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNQTR010000146.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323240 SAMN36350523-rid18740883.guided.046, whole genome shotgun sequence	30264..30701	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNQTR010000014.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323240 SAMN36350523-rid18740883.denovo.014, whole genome shotgun sequence	45536..46351	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNQTR010000147.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323240 SAMN36350523-rid18740883.guided.048, whole genome shotgun sequence	22484..23299	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNQTR010000014.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323240 SAMN36350523-rid18740883.denovo.014, whole genome shotgun sequence	48528..49727	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQTR010000147.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323240 SAMN36350523-rid18740883.guided.048, whole genome shotgun sequence	25476..26675	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	ColpVC	98.96	193 / 193	ABNQTR010000125.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323240 SAMN36350523-rid18740883.denovo.129, whole genome shotgun sequence	805..997																																																						avrA	ABNQTR010000007.1	39895..40764	99.885	870	0						
GCA_032587975.1_PDT001811138.1_genomic.fna	Salmonella_enterica	0.5224	48.302 KB	32	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQTT010000066.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323238 SAMN36350511-rid18740843.denovo.066, whole genome shotgun sequence	14126..14563	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQTT010000184.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323238 SAMN36350511-rid18740843.guided.098, whole genome shotgun sequence	14175..14612	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNQTT010000063.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323238 SAMN36350511-rid18740843.denovo.063, whole genome shotgun sequence	14271..15416	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNQTT010000188.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323238 SAMN36350511-rid18740843.guided.138, whole genome shotgun sequence	3036..4181	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNQTT010000117.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323238 SAMN36350511-rid18740843.denovo.121, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNQTT010000187.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323238 SAMN36350511-rid18740843.guided.120, whole genome shotgun sequence	3336..4151	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNQTT010000117.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323238 SAMN36350511-rid18740843.denovo.121, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQTT010000187.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323238 SAMN36350511-rid18740843.guided.120, whole genome shotgun sequence	6328..7527	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNQTT010000129.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323238 SAMN36350511-rid18740843.denovo.133, whole genome shotgun sequence	1326..1445	enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNQTT010000137.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323238 SAMN36350511-rid18740843.denovo.142, whole genome shotgun sequence	371..501		enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNQTT010000138.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323238 SAMN36350511-rid18740843.denovo.143, whole genome shotgun sequence	3134..3264		enterobacteriales	IncC	100	417 / 417	ABNQTT010000044.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323238 SAMN36350511-rid18740843.denovo.044, whole genome shotgun sequence	38349..38765																																		avrA	ABNQTT010000035.1	43810..44679	99.885	870	0						
GCA_032587995.1_PDT001811134.1_genomic.fna	Salmonella_enterica	0.5211	133.721 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQTW010000001.1 Salmonella enterica strain 23NC06CH01-S SAMN36349286-rid18740803.denovo.01, whole genome shotgun sequence	134924..135361	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQTW010000055.1 Salmonella enterica strain 23NC06CH01-S SAMN36349286-rid18740803.denovo.58, whole genome shotgun sequence	7785..8576	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQTW010000055.1 Salmonella enterica strain 23NC06CH01-S SAMN36349286-rid18740803.denovo.58, whole genome shotgun sequence	7785..8576	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNQTW010000092.1 Salmonella enterica strain 23NC06CH01-S SAMN36349286-rid18740803.guided.32, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.62	792/792	ABNQTW010000095.1 Salmonella enterica strain 23NC06CH01-S SAMN36349286-rid18740803.guided.68, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.62	792/792	ABNQTW010000095.1 Salmonella enterica strain 23NC06CH01-S SAMN36349286-rid18740803.guided.68, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNQTW010000096.1 Salmonella enterica strain 23NC06CH01-S SAMN36349286-rid18740803.guided.69, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQTW010000096.1 Salmonella enterica strain 23NC06CH01-S SAMN36349286-rid18740803.guided.69, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNQTW010000062.1 Salmonella enterica strain 23NC06CH01-S SAMN36349286-rid18740803.denovo.66, whole genome shotgun sequence	901..1776	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNQTW010000094.1 Salmonella enterica strain 23NC06CH01-S SAMN36349286-rid18740803.guided.64, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNQTW010000055.1 Salmonella enterica strain 23NC06CH01-S SAMN36349286-rid18740803.denovo.58, whole genome shotgun sequence	6441..7280	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQTW010000095.1 Salmonella enterica strain 23NC06CH01-S SAMN36349286-rid18740803.guided.68, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQTW010000096.1 Salmonella enterica strain 23NC06CH01-S SAMN36349286-rid18740803.guided.69, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQTW010000047.1 Salmonella enterica strain 23NC06CH01-S SAMN36349286-rid18740803.denovo.50, whole genome shotgun sequence	941..2140	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQTW010000097.1 Salmonella enterica strain 23NC06CH01-S SAMN36349286-rid18740803.guided.70, whole genome shotgun sequence	972..2171	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																															gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQTW010000048.1 Salmonella enterica strain 23NC06CH01-S SAMN36349286-rid18740803.denovo.51, whole genome shotgun sequence	9109..9668																																																						avrA	ABNQTW010000002.1	95321..96190	99.655	870	0						
GCA_032588015.1_PDT001811139.1_genomic.fna	Salmonella_enterica	0.5234	73.757 KB	20	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQTS010000056.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323235 SAMN36350512-rid18740853.denovo.058, whole genome shotgun sequence	12476..12913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQTS010000117.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12323235 SAMN36350512-rid18740853.guided.063, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032588035.1_PDT001811136.1_genomic.fna	Salmonella_enterica	0.5226	55.668 KB	29	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQTU010000061.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323237 SAMN36350510-rid18740823.denovo.062, whole genome shotgun sequence	12463..12900	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNQTU010000163.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323237 SAMN36350510-rid18740823.guided.061, whole genome shotgun sequence	15609..16046	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNQTU010000130.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323237 SAMN36350510-rid18740823.denovo.133, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNQTU010000166.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323237 SAMN36350510-rid18740823.guided.152, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNQTU010000130.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323237 SAMN36350510-rid18740823.denovo.133, whole genome shotgun sequence	1522..1652																																																						avrA	ABNQTU010000009.1	81753..82621	99.77	870	0						
GCA_032588055.1_PDT001811135.1_genomic.fna	Salmonella_enterica	0.5209	123.213 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQTV010000010.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.denovo.010, whole genome shotgun sequence	20963..21400	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQTV010000053.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.denovo.057, whole genome shotgun sequence	7855..8646	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQTV010000053.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.denovo.057, whole genome shotgun sequence	7855..8646	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNQTV010000057.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.denovo.061, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQTV010000057.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.denovo.061, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNQTV010000098.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.guided.029, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNQTV010000101.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.guided.065, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNQTV010000101.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.guided.065, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNQTV010000102.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.guided.070, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQTV010000102.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.guided.070, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	floR	98.19	1214/1215	ABNQTV010000058.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.denovo.063, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNQTV010000100.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.guided.062, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNQTV010000053.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.denovo.057, whole genome shotgun sequence	6511..7350	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQTV010000102.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.guided.070, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQTV010000048.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.denovo.052, whole genome shotgun sequence	928..2127	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQTV010000099.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.guided.051, whole genome shotgun sequence	959..2158	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQTV010000043.1 Salmonella enterica strain 23NC06CL01-S SAMN36349285-rid18740813.denovo.046, whole genome shotgun sequence	9109..9668																																																						avrA	ABNQTV010000001.1	95321..96190	99.655	870	0						
GCA_032588075.1_PDT001811133.1_genomic.fna	Salmonella_enterica	0.5192	184.006 KB	8	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQTX010000007.1 Salmonella enterica strain 23NC06GT02-S SAMN36349287-rid18740793.denovo.07, whole genome shotgun sequence	6461..6898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQTX010000065.1 Salmonella enterica strain 23NC06GT02-S SAMN36349287-rid18740793.guided.46, whole genome shotgun sequence	445..882	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNQTX010000008.1 Salmonella enterica strain 23NC06GT02-S SAMN36349287-rid18740793.denovo.08, whole genome shotgun sequence	27818..28240	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNQTX010000062.1 Salmonella enterica strain 23NC06GT02-S SAMN36349287-rid18740793.guided.39, whole genome shotgun sequence	2263..2685	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQTX010000001.1	152805..153674	99.195	870	0						
GCA_032588095.1_PDT001811131.1_genomic.fna	Salmonella_enterica	0.521	401.16 KB	5	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),ColRNAI,ColpVC	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNQTZ010000001.1 Salmonella enterica strain 23NC06GT06-S SAMN36349289-rid18740773.denovo.01, whole genome shotgun sequence	779743..780180	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNQTZ010000045.1 Salmonella enterica strain 23NC06GT06-S SAMN36349289-rid18740773.guided.22, whole genome shotgun sequence	2786..3223	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.27	113 / 131	ABNQTZ010000030.1 Salmonella enterica strain 23NC06GT06-S SAMN36349289-rid18740773.denovo.33, whole genome shotgun sequence	1600..1712	enterobacteriales	ColRNAI	90.08	131 / 130	ABNQTZ010000026.1 Salmonella enterica strain 23NC06GT06-S SAMN36349289-rid18740773.denovo.29, whole genome shotgun sequence	3981..4111		enterobacteriales	ColpVC	98.96	193 / 193	ABNQTZ010000031.1 Salmonella enterica strain 23NC06GT06-S SAMN36349289-rid18740773.denovo.34, whole genome shotgun sequence	805..997																																									avrA	ABNQTZ010000006.1	140114..140983	99.425	870	0						
GCA_032588115.1_PDT001811130.1_genomic.fna	Salmonella_enterica	0.5225	416.903 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQUA010000001.1 Salmonella enterica strain PNUSAS361388 SAMN36350508-rid18740763.denovo.01, whole genome shotgun sequence	173853..174290	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNQUA010000033.1 Salmonella enterica strain PNUSAS361388 SAMN36350508-rid18740763.guided.24, whole genome shotgun sequence	4346..4783	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQUA010000004.1	39434..40303	98.966	870	0						
GCA_032588135.1_PDT001811132.1_genomic.fna	Salmonella_enterica	0.5216	389.14 KB	5	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQTY010000001.1 Salmonella enterica strain 23NC06GT05-S SAMN36349288-rid18740783.denovo.01, whole genome shotgun sequence	133985..134422	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQTY010000047.1 Salmonella enterica strain 23NC06GT05-S SAMN36349288-rid18740783.guided.24, whole genome shotgun sequence	11546..11983	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032588155.1_PDT001811127.1_genomic.fna	Salmonella_enterica	0.5184	305.124 KB	7	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_4	371	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNQUD010000003.1 Salmonella enterica strain PNUSAS361396 SAMN36350496-rid18740733.denovo.03, whole genome shotgun sequence	309601..310038	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNQUD010000074.1 Salmonella enterica strain PNUSAS361396 SAMN36350496-rid18740733.guided.20, whole genome shotgun sequence	42382..42819	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNQUD010000019.1 Salmonella enterica strain PNUSAS361396 SAMN36350496-rid18740733.denovo.19, whole genome shotgun sequence	5328..5970																																																						avrA	ABNQUD010000001.1	497774..498643	99.54	870	0						
GCA_032588175.1_PDT001811128.1_genomic.fna	Salmonella_enterica	0.521	478.495 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQUC010000001.1 Salmonella enterica strain PNUSAS361387 SAMN36350507-rid18740743.denovo.01, whole genome shotgun sequence	56456..56893	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQUC010000030.1 Salmonella enterica strain PNUSAS361387 SAMN36350507-rid18740743.guided.18, whole genome shotgun sequence	2706..3143	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNQUC010000023.1 Salmonella enterica strain PNUSAS361387 SAMN36350507-rid18740743.denovo.26, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQUC010000016.1 Salmonella enterica strain PNUSAS361387 SAMN36350507-rid18740743.denovo.16, whole genome shotgun sequence	49285..49927		enterobacteriales	IncFII(S)	100	262 / 262	ABNQUC010000016.1 Salmonella enterica strain PNUSAS361387 SAMN36350507-rid18740743.denovo.16, whole genome shotgun sequence	5032..5293																																									avrA	ABNQUC010000002.1	553083..553952	99.54	870	0						
GCA_032588195.1_PDT001811129.1_genomic.fna	Salmonella_enterica	0.5221	213.562 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQUB010000003.1 Salmonella enterica strain PNUSAS361393 SAMN36350504-rid18740753.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQUB010000055.1 Salmonella enterica strain PNUSAS361393 SAMN36350504-rid18740753.guided.39, whole genome shotgun sequence	10410..10847	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNQUB010000014.1 Salmonella enterica strain PNUSAS361393 SAMN36350504-rid18740753.denovo.14, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNQUB010000014.1 Salmonella enterica strain PNUSAS361393 SAMN36350504-rid18740753.denovo.14, whole genome shotgun sequence	30407..30668																																																avrA	ABNQUB010000007.1	39348..40216	100	869	0						
GCA_032588215.1_PDT001811126.1_genomic.fna	Salmonella_enterica	0.5213	489.113 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQUE010000001.1 Salmonella enterica strain PNUSAS361390 SAMN36350497-rid18740723.denovo.01, whole genome shotgun sequence	727844..728281	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQUE010000034.1 Salmonella enterica strain PNUSAS361390 SAMN36350497-rid18740723.guided.16, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQUE010000003.1	153057..153926	99.195	870	0						
GCA_032588235.1_PDT001811125.1_genomic.fna	Salmonella_enterica	0.5219	257.314 KB	7	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNQUF010000013.1 Salmonella enterica strain PNUSAS361391 SAMN36350502-rid18740713.denovo.13, whole genome shotgun sequence	70770..71207	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNQUF010000069.1 Salmonella enterica strain PNUSAS361391 SAMN36350502-rid18740713.guided.35, whole genome shotgun sequence	4346..4783	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQUF010000001.1	39600..40469	98.966	870	0						
GCA_032588255.1_PDT001811122.1_genomic.fna	Salmonella_enterica	0.5217	325.118 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQUI010000001.1 Salmonella enterica strain PNUSAS361395 SAMN36350506-rid18740683.denovo.01, whole genome shotgun sequence	727904..728341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQUI010000041.1 Salmonella enterica strain PNUSAS361395 SAMN36350506-rid18740683.guided.25, whole genome shotgun sequence	281..718	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQUI010000002.1	153901..154770	99.195	870	0						
GCA_032588275.1_PDT001811124.1_genomic.fna	Salmonella_enterica	0.5187	213.675 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		5	IncFIA(HI1),IncFIB(S),IncFII(S),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQUG010000003.1 Salmonella enterica strain PNUSAS361398 SAMN36350500-rid18740703.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQUG010000065.1 Salmonella enterica strain PNUSAS361398 SAMN36350500-rid18740703.guided.16, whole genome shotgun sequence	23843..24280	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNQUG010000034.1 Salmonella enterica strain PNUSAS361398 SAMN36350500-rid18740703.denovo.37, whole genome shotgun sequence	290..1495	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNQUG010000068.1 Salmonella enterica strain PNUSAS361398 SAMN36350500-rid18740703.guided.46, whole genome shotgun sequence	12757..13962	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIA(HI1)	100	388 / 388	ABNQUG010000031.1 Salmonella enterica strain PNUSAS361398 SAMN36350500-rid18740703.denovo.32, whole genome shotgun sequence	956..1343	enterobacteriales	IncFIB(S)	100	643 / 643	ABNQUG010000014.1 Salmonella enterica strain PNUSAS361398 SAMN36350500-rid18740703.denovo.14, whole genome shotgun sequence	82543..83185		enterobacteriales	IncFII(S)	100	262 / 262	ABNQUG010000014.1 Salmonella enterica strain PNUSAS361398 SAMN36350500-rid18740703.denovo.14, whole genome shotgun sequence	4432..4693		enterobacteriales	IncHI1A	99.76	420 / 420	ABNQUG010000023.1 Salmonella enterica strain PNUSAS361398 SAMN36350500-rid18740703.denovo.24, whole genome shotgun sequence	43233..43652		enterobacteriales	IncHI1B(R27)	100	540 / 540	ABNQUG010000023.1 Salmonella enterica strain PNUSAS361398 SAMN36350500-rid18740703.denovo.24, whole genome shotgun sequence	29617..30156	R27																										avrA	ABNQUG010000001.1	401456..402324	100	869	0						
GCA_032588295.1_PDT001811123.1_genomic.fna	Salmonella_enterica	0.5186	168.412 KB	8	aroC_110,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2711	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_110	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQUH010000004.1 Salmonella enterica strain PNUSAS361394 SAMN36350505-rid18740693.denovo.04, whole genome shotgun sequence	75151..75588	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQUH010000057.1 Salmonella enterica strain PNUSAS361394 SAMN36350505-rid18740693.guided.31, whole genome shotgun sequence	9282..9719	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNQUH010000025.1 Salmonella enterica strain PNUSAS361394 SAMN36350505-rid18740693.denovo.25, whole genome shotgun sequence	48717..49359	enterobacteriales	IncFII(pCRY)	94.92	591 / 593	ABNQUH010000040.1 Salmonella enterica strain PNUSAS361394 SAMN36350505-rid18740693.denovo.43, whole genome shotgun sequence	10709..11299																																																											
GCA_032588315.1_PDT001811121.1_genomic.fna	Salmonella_enterica	0.521	544.611 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQUJ010000001.1 Salmonella enterica strain PNUSAS361389 SAMN36350501-rid18740673.denovo.01, whole genome shotgun sequence	1312885..1313322	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQUJ010000025.1 Salmonella enterica strain PNUSAS361389 SAMN36350501-rid18740673.guided.12, whole genome shotgun sequence	27825..28262	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQUJ010000003.1	39384..40253	99.425	870	0						
GCA_032588335.1_PDT001811120.1_genomic.fna	Salmonella_enterica	0.5212	456.269 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQUK010000005.1 Salmonella enterica strain PNUSAS361399 SAMN36350498-rid18740663.denovo.05, whole genome shotgun sequence	162566..163003	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQUK010000031.1 Salmonella enterica strain PNUSAS361399 SAMN36350498-rid18740663.guided.21, whole genome shotgun sequence	20311..20748	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQUK010000018.1 Salmonella enterica strain PNUSAS361399 SAMN36350498-rid18740663.denovo.18, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNQUK010000018.1 Salmonella enterica strain PNUSAS361399 SAMN36350498-rid18740663.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABNQUK010000001.1	553078..553947	99.54	870	0						
GCA_032588355.1_PDT001811119.1_genomic.fna	Salmonella_enterica	0.5219	167.566 KB	11	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQUM010000007.1 Salmonella enterica strain PNUSAS361397 SAMN36350499-rid18740653.denovo.07, whole genome shotgun sequence	144205..144642	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQUM010000056.1 Salmonella enterica strain PNUSAS361397 SAMN36350499-rid18740653.guided.33, whole genome shotgun sequence	7646..8083	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032588635.1_PDT001811103.1_genomic.fna	Salmonella_enterica	0.5199	331.88 KB	6	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_4	371	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNQUZ010000004.1 Salmonella enterica strain PNUSAS361392 SAMN36350503-rid18740493.denovo.04, whole genome shotgun sequence	257668..258105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNQUZ010000063.1 Salmonella enterica strain PNUSAS361392 SAMN36350503-rid18740493.guided.20, whole genome shotgun sequence	42382..42819	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNQUZ010000020.1 Salmonella enterica strain PNUSAS361392 SAMN36350503-rid18740493.denovo.21, whole genome shotgun sequence	5328..5970	enterobacteriales	IncI1-I(Alpha)	95.65	138 / 142	ABNQUZ010000025.1 Salmonella enterica strain PNUSAS361392 SAMN36350503-rid18740493.denovo.27, whole genome shotgun sequence	17352..17487																																																avrA	ABNQUZ010000001.1	544528..545397	99.54	870	0						
GCA_032588775.1_PDT001811095.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQVI010000001.1 Salmonella enterica strain PNUSAS361171 SAMN36349077-rid18740403.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQVI010000026.1 Salmonella enterica strain PNUSAS361171 SAMN36349077-rid18740403.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQVI010000013.1 Salmonella enterica strain PNUSAS361171 SAMN36349077-rid18740403.denovo.14, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNQVI010000017.1 Salmonella enterica strain PNUSAS361171 SAMN36349077-rid18740403.denovo.20, whole genome shotgun sequence	3395..3656																																																avrA	ABNQVI010000002.1	553630..554499	99.54	870	0						
GCA_032588815.1_PDT001811096.1_genomic.fna	Salmonella_enterica	0.5211	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQVH010000001.1 Salmonella enterica strain PNUSAS361178 SAMN36349074-rid18740413.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQVH010000023.1 Salmonella enterica strain PNUSAS361178 SAMN36349074-rid18740413.guided.12, whole genome shotgun sequence	40515..40952	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQVH010000011.1 Salmonella enterica strain PNUSAS361178 SAMN36349074-rid18740413.denovo.11, whole genome shotgun sequence	47948..48590	enterobacteriales	IncFII(S)	100	262 / 262	ABNQVH010000011.1 Salmonella enterica strain PNUSAS361178 SAMN36349074-rid18740413.denovo.11, whole genome shotgun sequence	3704..3965																																																avrA	ABNQVH010000002.1	505461..506330	99.54	870	0						
GCA_032588835.1_PDT001811094.1_genomic.fna	Salmonella_enterica	0.5195	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNQVJ010000010.1 Salmonella enterica strain PNUSAS361185 SAMN36349072-rid18740393.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNQVJ010000061.1 Salmonella enterica strain PNUSAS361185 SAMN36349072-rid18740393.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	ABNQVJ010000018.1 Salmonella enterica strain PNUSAS361185 SAMN36349072-rid18740393.denovo.18, whole genome shotgun sequence	23493..24367																																																																	
GCA_032588855.1_PDT001811093.1_genomic.fna	Salmonella_enterica	0.5196	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQVK010000001.1 Salmonella enterica strain PNUSAS361184 SAMN36349069-rid18740383.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQVK010000037.1 Salmonella enterica strain PNUSAS361184 SAMN36349069-rid18740383.guided.20, whole genome shotgun sequence	39455..39892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQVK010000002.1	150078..150947	99.655	870	0						
GCA_032588875.1_PDT001811091.1_genomic.fna	Salmonella_enterica	0.5213	355.936 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNQVM010000003.1 Salmonella enterica strain PNUSAS361188 SAMN36349067-rid18740363.denovo.03, whole genome shotgun sequence	354324..354761	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNQVM010000039.1 Salmonella enterica strain PNUSAS361188 SAMN36349067-rid18740363.guided.20, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQVM010000012.1	94222..95091	98.966	870	0						
GCA_032588895.1_PDT001811092.1_genomic.fna	Salmonella_enterica	0.5214	558.353 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNQVL010000001.1 Salmonella enterica strain PNUSAS361159 SAMN36349075-rid18740373.denovo.01, whole genome shotgun sequence	847156..847593	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNQVL010000030.1 Salmonella enterica strain PNUSAS361159 SAMN36349075-rid18740373.guided.21, whole genome shotgun sequence	1424..1861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQVL010000003.1	94234..95103	98.966	870	0						
GCA_032588915.1_PDT001811090.1_genomic.fna	Salmonella_enterica	0.5211	444.791 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNQVN010000001.1 Salmonella enterica strain PNUSAS361176 SAMN36349073-rid18740353.denovo.01, whole genome shotgun sequence	671743..672180	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNQVN010000025.1 Salmonella enterica strain PNUSAS361176 SAMN36349073-rid18740353.guided.16, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032588935.1_PDT001811089.1_genomic.fna	Salmonella_enterica	0.5207	365.032 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQVO010000001.1 Salmonella enterica strain PNUSAS361173 SAMN36349068-rid18740343.denovo.01, whole genome shotgun sequence	498124..498561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQVO010000033.1 Salmonella enterica strain PNUSAS361173 SAMN36349068-rid18740343.guided.22, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQVO010000008.1	140447..141316	99.425	870	0						
GCA_032588955.1_PDT001811088.1_genomic.fna	Salmonella_enterica	0.5167	378.434 KB	4	aroC_30,dnaN_28,hemD_31,hisD_57,purE_57,sucA_69,thrA_30	162	7:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFII(pCRY),IncI1-I(Alpha),IncL	aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_57	purE	100	100	purE_57	sucA	100	100	sucA_69	thrA	100	100	thrA_30	7	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 7:z4,z32:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNQVP010000001.1 Salmonella enterica strain PNUSAS361180 SAMN36349076-rid18740333.denovo.01, whole genome shotgun sequence	423819..424256	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNQVP010000045.1 Salmonella enterica strain PNUSAS361180 SAMN36349076-rid18740333.guided.28, whole genome shotgun sequence	4349..4786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNQVP010000023.1 Salmonella enterica strain PNUSAS361180 SAMN36349076-rid18740333.denovo.25, whole genome shotgun sequence	21066..21658	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNQVP010000012.1 Salmonella enterica strain PNUSAS361180 SAMN36349076-rid18740333.denovo.12, whole genome shotgun sequence	15830..15971		enterobacteriales	IncL	98.64	663 / 661	ABNQVP010000018.1 Salmonella enterica strain PNUSAS361180 SAMN36349076-rid18740333.denovo.18, whole genome shotgun sequence	25770..26431																																																				
GCA_032588975.1_PDT001811086.1_genomic.fna	Salmonella_enterica	0.5216	341.181 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQVS010000002.1 Salmonella enterica strain PNUSAS361175 SAMN36349071-rid18740313.denovo.02, whole genome shotgun sequence	145192..145629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNQVS010000047.1 Salmonella enterica strain PNUSAS361175 SAMN36349071-rid18740313.guided.25, whole genome shotgun sequence	12014..12451	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNQVS010000017.1 Salmonella enterica strain PNUSAS361175 SAMN36349071-rid18740313.denovo.17, whole genome shotgun sequence	36050..36692	enterobacteriales	IncFII(S)	100	262 / 262	ABNQVS010000017.1 Salmonella enterica strain PNUSAS361175 SAMN36349071-rid18740313.denovo.17, whole genome shotgun sequence	51777..52038																																																avrA	ABNQVS010000001.1	450786..451655	99.885	870	0						
GCA_032588995.1_PDT001811085.1_genomic.fna	Salmonella_enterica	0.5209	365.031 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQVR010000001.1 Salmonella enterica strain PNUSAS361183 SAMN36348528-rid18740303.denovo.01, whole genome shotgun sequence	498135..498572	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQVR010000031.1 Salmonella enterica strain PNUSAS361183 SAMN36348528-rid18740303.guided.13, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQVR010000010.1	94265..95134	99.425	870	0						
GCA_032589015.1_PDT001811084.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQVT010000001.1 Salmonella enterica strain PNUSAS361163 SAMN36348531-rid18740293.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQVT010000024.1 Salmonella enterica strain PNUSAS361163 SAMN36348531-rid18740293.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNQVT010000018.1 Salmonella enterica strain PNUSAS361163 SAMN36348531-rid18740293.denovo.21, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQVT010000012.1 Salmonella enterica strain PNUSAS361163 SAMN36348531-rid18740293.denovo.14, whole genome shotgun sequence	40576..41218		enterobacteriales	IncFII(S)	100	262 / 262	ABNQVT010000015.1 Salmonella enterica strain PNUSAS361163 SAMN36348531-rid18740293.denovo.18, whole genome shotgun sequence	3446..3707																																									avrA	ABNQVT010000002.1	553636..554505	99.54	870	0						
GCA_032589035.1_PDT001811083.1_genomic.fna	Salmonella_enterica	0.5223	370.267 KB	5	aroC_46,dnaN_54,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	127	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_54	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNQVU010000001.1 Salmonella enterica strain PNUSAS361280 SAMN36348527-rid18740283.denovo.01, whole genome shotgun sequence	666952..667389	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNQVU010000025.1 Salmonella enterica strain PNUSAS361280 SAMN36348527-rid18740283.guided.12, whole genome shotgun sequence	42403..42840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNQVU010000002.1	407758..408627	99.31	870	0						
GCA_032589055.1_PDT001811087.1_genomic.fna	Salmonella_enterica	0.5213	382.798 KB	4	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNQVQ010000001.1 Salmonella enterica strain PNUSAS361174 SAMN36349070-rid18740323.denovo.01, whole genome shotgun sequence	383903..384340	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNQVQ010000027.1 Salmonella enterica strain PNUSAS361174 SAMN36349070-rid18740323.guided.17, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABNQVQ010000002.1 Salmonella enterica strain PNUSAS361174 SAMN36349070-rid18740323.denovo.02, whole genome shotgun sequence	402435..402857	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNQVQ010000028.1 Salmonella enterica strain PNUSAS361174 SAMN36349070-rid18740323.guided.19, whole genome shotgun sequence	6046..6468	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQVQ010000006.1	174512..175381	99.54	870	0						
GCA_032589095.1_PDT001811082.1_genomic.fna	Salmonella_enterica	0.5209	489.823 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQVV010000001.1 Salmonella enterica strain PNUSAS361169 SAMN36348530-rid18740273.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQVV010000022.1 Salmonella enterica strain PNUSAS361169 SAMN36348530-rid18740273.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQVV010000012.1 Salmonella enterica strain PNUSAS361169 SAMN36348530-rid18740273.denovo.14, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNQVV010000012.1 Salmonella enterica strain PNUSAS361169 SAMN36348530-rid18740273.denovo.14, whole genome shotgun sequence	53092..53353																																																avrA	ABNQVV010000002.1	553636..554505	99.54	870	0						
GCA_032589115.1_PDT001811081.1_genomic.fna	Salmonella_enterica	0.5213	478.434 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQVW010000001.1 Salmonella enterica strain PNUSAS361182 SAMN36348529-rid18740263.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQVW010000024.1 Salmonella enterica strain PNUSAS361182 SAMN36348529-rid18740263.guided.15, whole genome shotgun sequence	3461..3898	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQVW010000012.1 Salmonella enterica strain PNUSAS361182 SAMN36348529-rid18740263.denovo.12, whole genome shotgun sequence	40557..41199	enterobacteriales	IncFII(S)	100	262 / 262	ABNQVW010000016.1 Salmonella enterica strain PNUSAS361182 SAMN36348529-rid18740263.denovo.17, whole genome shotgun sequence	3403..3664																																																avrA	ABNQVW010000002.1	553426..554295	99.54	870	0						
GCA_032589175.1_PDT001811075.1_genomic.fna	Salmonella_enterica	0.522	376.532 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQWC010000004.1 Salmonella enterica strain PNUSAS361381 SAMN36347481-rid18740203.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQWC010000038.1 Salmonella enterica strain PNUSAS361381 SAMN36347481-rid18740203.guided.30, whole genome shotgun sequence	10615..11052	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNQWC010000021.1 Salmonella enterica strain PNUSAS361381 SAMN36347481-rid18740203.denovo.21, whole genome shotgun sequence	44718..45360	enterobacteriales	IncFII(S)	100	262 / 262	ABNQWC010000021.1 Salmonella enterica strain PNUSAS361381 SAMN36347481-rid18740203.denovo.21, whole genome shotgun sequence	29372..29633																																																avrA	ABNQWC010000001.1	446736..447604	100	869	0						
GCA_032589185.1_PDT001811077.1_genomic.fna	Salmonella_enterica	0.5211	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQWA010000001.1 Salmonella enterica strain PNUSAS361371 SAMN36347488-rid18740223.denovo.01, whole genome shotgun sequence	573934..574371	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNQWA010000013.1 Salmonella enterica strain PNUSAS361371 SAMN36347488-rid18740223.denovo.13, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQWA010000013.1 Salmonella enterica strain PNUSAS361371 SAMN36347488-rid18740223.denovo.13, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNQWA010000052.1 Salmonella enterica strain PNUSAS361371 SAMN36347488-rid18740223.guided.40, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNQWA010000052.1 Salmonella enterica strain PNUSAS361371 SAMN36347488-rid18740223.guided.40, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNQWA010000053.1 Salmonella enterica strain PNUSAS361371 SAMN36347488-rid18740223.guided.44, whole genome shotgun sequence	70..507	Amikacin, Tobramycin	NC_003197	blaCTX-M-65	100	876/876	ABNQWA010000038.1 Salmonella enterica strain PNUSAS361371 SAMN36347488-rid18740223.denovo.42, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNQWA010000054.1 Salmonella enterica strain PNUSAS361371 SAMN36347488-rid18740223.guided.45, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNQWA010000013.1 Salmonella enterica strain PNUSAS361371 SAMN36347488-rid18740223.denovo.13, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNQWA010000052.1 Salmonella enterica strain PNUSAS361371 SAMN36347488-rid18740223.guided.40, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNQWA010000013.1 Salmonella enterica strain PNUSAS361371 SAMN36347488-rid18740223.denovo.13, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQWA010000049.1 Salmonella enterica strain PNUSAS361371 SAMN36347488-rid18740223.guided.34, whole genome shotgun sequence	4619..5818	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQWA010000030.1 Salmonella enterica strain PNUSAS361371 SAMN36347488-rid18740223.denovo.30, whole genome shotgun sequence	9109..9668																																																						avrA	ABNQWA010000002.1	149828..150697	99.655	870	0						
GCA_032589235.1_PDT001811074.1_genomic.fna	Salmonella_enterica	0.5213	406.326 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQWD010000001.1 Salmonella enterica strain PNUSAS361378 SAMN36347485-rid18740193.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQWD010000028.1 Salmonella enterica strain PNUSAS361378 SAMN36347485-rid18740193.guided.21, whole genome shotgun sequence	2427..2864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQWD010000018.1 Salmonella enterica strain PNUSAS361378 SAMN36347485-rid18740193.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNQWD010000020.1 Salmonella enterica strain PNUSAS361378 SAMN36347485-rid18740193.denovo.22, whole genome shotgun sequence	3398..3659																																																avrA	ABNQWD010000002.1	553636..554505	99.54	870	0						
GCA_032589255.1_PDT001811073.1_genomic.fna	Salmonella_enterica	0.5225	388.36 KB	4	aroC_328,dnaN_63,hemD_48,hisD_186,purE_36,sucA_35,thrA_3	1254	28:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_328	dnaN	100	100	dnaN_63	hemD	100	100	hemD_48	hisD	100	100	hisD_186	purE	100	100	purE_36	sucA	100	100	sucA_35	thrA	100	100	thrA_3	28	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Nima		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQWE010000001.1 Salmonella enterica strain PNUSAS361373 SAMN36347482-rid18740183.denovo.01, whole genome shotgun sequence	498942..499379	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQWE010000028.1 Salmonella enterica strain PNUSAS361373 SAMN36347482-rid18740183.guided.24, whole genome shotgun sequence	2228..2665	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.62	446 / 445	ABNQWE010000015.1 Salmonella enterica strain PNUSAS361373 SAMN36347482-rid18740183.denovo.15, whole genome shotgun sequence	51357..51801	enterobacteriales	IncFII(Yp)	91.67	216 / 230	ABNQWE010000015.1 Salmonella enterica strain PNUSAS361373 SAMN36347482-rid18740183.denovo.15, whole genome shotgun sequence	50882..51096																																																avrA	ABNQWE010000002.1	155100..155969	99.54	870	0						
GCA_032589275.1_PDT001811072.1_genomic.fna	Salmonella_enterica	0.5212	406.117 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQWF010000001.1 Salmonella enterica strain PNUSAS361374 SAMN36347477-rid18740173.denovo.01, whole genome shotgun sequence	774495..774932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQWF010000030.1 Salmonella enterica strain PNUSAS361374 SAMN36347477-rid18740173.guided.24, whole genome shotgun sequence	2166..2603	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQWF010000019.1 Salmonella enterica strain PNUSAS361374 SAMN36347477-rid18740173.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNQWF010000020.1 Salmonella enterica strain PNUSAS361374 SAMN36347477-rid18740173.denovo.22, whole genome shotgun sequence	3402..3663																																																avrA	ABNQWF010000002.1	553502..554371	99.54	870	0						
GCA_032589285.1_PDT001811070.1_genomic.fna	Salmonella_enterica	0.5204	412.517 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQWH010000001.1 Salmonella enterica strain PNUSAS361379 SAMN36347480-rid18740153.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQWH010000029.1 Salmonella enterica strain PNUSAS361379 SAMN36347480-rid18740153.guided.24, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQWH010000020.1 Salmonella enterica strain PNUSAS361379 SAMN36347480-rid18740153.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNQWH010000021.1 Salmonella enterica strain PNUSAS361379 SAMN36347480-rid18740153.denovo.23, whole genome shotgun sequence	3386..3647		enterobacteriales	IncX1	98.93	374 / 374	ABNQWH010000016.1 Salmonella enterica strain PNUSAS361379 SAMN36347480-rid18740153.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABNQWH010000002.1	553684..554553	99.54	870	0						
GCA_032589305.1_PDT001811071.1_genomic.fna	Salmonella_enterica	0.5225	294.923 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNQWG010000012.1 Salmonella enterica strain PNUSAS361376 SAMN36347483-rid18740163.denovo.12, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNQWG010000035.1 Salmonella enterica strain PNUSAS361376 SAMN36347483-rid18740163.guided.29, whole genome shotgun sequence	8179..8616	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQWG010000006.1	131905..132774	98.966	870	0						
GCA_032589335.1_PDT001811069.1_genomic.fna	Salmonella_enterica	0.5215	696.614 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQWI010000001.1 Salmonella enterica strain PNUSAS361382 SAMN36347487-rid18740143.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQWI010000028.1 Salmonella enterica strain PNUSAS361382 SAMN36347487-rid18740143.guided.26, whole genome shotgun sequence	414..851	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQWI010000015.1 Salmonella enterica strain PNUSAS361382 SAMN36347487-rid18740143.denovo.15, whole genome shotgun sequence	40526..41168	enterobacteriales	IncFII(S)	100	262 / 262	ABNQWI010000019.1 Salmonella enterica strain PNUSAS361382 SAMN36347487-rid18740143.denovo.20, whole genome shotgun sequence	3392..3653																																																avrA	ABNQWI010000002.1	553636..554505	99.54	870	0						
GCA_032589355.1_PDT001811067.1_genomic.fna	Salmonella_enterica	0.5226	390.856 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNQWK010000001.1 Salmonella enterica strain PNUSAS361370 SAMN36347484-rid18740123.denovo.01, whole genome shotgun sequence	1111707..1112144	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQWK010000022.1 Salmonella enterica strain PNUSAS361370 SAMN36347484-rid18740123.denovo.26, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNQWK010000022.1 Salmonella enterica strain PNUSAS361370 SAMN36347484-rid18740123.denovo.26, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNQWK010000022.1 Salmonella enterica strain PNUSAS361370 SAMN36347484-rid18740123.denovo.26, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNQWK010000022.1 Salmonella enterica strain PNUSAS361370 SAMN36347484-rid18740123.denovo.26, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNQWK010000022.1 Salmonella enterica strain PNUSAS361370 SAMN36347484-rid18740123.denovo.26, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNQWK010000036.1 Salmonella enterica strain PNUSAS361370 SAMN36347484-rid18740123.guided.22, whole genome shotgun sequence	7500..7937	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQWK010000037.1 Salmonella enterica strain PNUSAS361370 SAMN36347484-rid18740123.guided.25, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNQWK010000037.1 Salmonella enterica strain PNUSAS361370 SAMN36347484-rid18740123.guided.25, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNQWK010000037.1 Salmonella enterica strain PNUSAS361370 SAMN36347484-rid18740123.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNQWK010000037.1 Salmonella enterica strain PNUSAS361370 SAMN36347484-rid18740123.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNQWK010000037.1 Salmonella enterica strain PNUSAS361370 SAMN36347484-rid18740123.guided.25, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNQWK010000021.1 Salmonella enterica strain PNUSAS361370 SAMN36347484-rid18740123.denovo.24, whole genome shotgun sequence	3215..4414	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQWK010000038.1 Salmonella enterica strain PNUSAS361370 SAMN36347484-rid18740123.guided.27, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNQWK010000025.1 Salmonella enterica strain PNUSAS361370 SAMN36347484-rid18740123.denovo.30, whole genome shotgun sequence	805..997																																																						avrA	ABNQWK010000007.1	140331..141200	99.655	870	0						
GCA_032589375.1_PDT001811066.1_genomic.fna	Salmonella_enterica	0.5207	391.698 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNQWL010000003.1 Salmonella enterica strain PNUSAS361367 SAMN36347479-rid18740113.denovo.03, whole genome shotgun sequence	260744..261181	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNQWL010000030.1 Salmonella enterica strain PNUSAS361367 SAMN36347479-rid18740113.guided.27, whole genome shotgun sequence	2476..2913	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032589395.1_PDT001811065.1_genomic.fna	Salmonella_enterica	0.5205	490.114 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQWM010000001.1 Salmonella enterica strain PNUSAS361369 SAMN36347486-rid18740103.denovo.01, whole genome shotgun sequence	780488..780925	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQWM010000024.1 Salmonella enterica strain PNUSAS361369 SAMN36347486-rid18740103.guided.19, whole genome shotgun sequence	3119..3556	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQWM010000016.1 Salmonella enterica strain PNUSAS361369 SAMN36347486-rid18740103.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNQWM010000017.1 Salmonella enterica strain PNUSAS361369 SAMN36347486-rid18740103.denovo.18, whole genome shotgun sequence	3413..3674		enterobacteriales	IncX1	98.93	374 / 374	ABNQWM010000012.1 Salmonella enterica strain PNUSAS361369 SAMN36347486-rid18740103.denovo.12, whole genome shotgun sequence	32011..32384																																									avrA	ABNQWM010000002.1	553690..554559	99.54	870	0						
GCA_032589415.1_PDT001811068.1_genomic.fna	Salmonella_enterica	0.5139	363.568 KB	6	aroC_33,dnaN_26,hemD_30,hisD_26,purE_21,sucA_32,thrA_28	63	60:r:e,n,x,z15	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_32	thrA	100	100	thrA_28	60	r	e,n,x,z15	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 60:r:e,n,x,z15		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNQWJ010000005.1 Salmonella enterica strain PNUSAS361372 SAMN36347489-rid18740133.denovo.05, whole genome shotgun sequence	116535..116972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNQWJ010000051.1 Salmonella enterica strain PNUSAS361372 SAMN36347489-rid18740133.guided.34, whole genome shotgun sequence	888..1325	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNQWJ010000052.1 Salmonella enterica strain PNUSAS361372 SAMN36347489-rid18740133.guided.35, whole genome shotgun sequence	888..1325	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQWJ010000001.1	108149..109018	96.667	870	0						
GCA_032589435.1_PDT001811063.1_genomic.fna	Salmonella_enterica	0.5211	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQWO010000001.1 Salmonella enterica strain PNUSAS361377 SAMN36347475-rid18740083.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQWO010000056.1 Salmonella enterica strain PNUSAS361377 SAMN36347475-rid18740083.guided.46, whole genome shotgun sequence	772..1209	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNQWO010000033.1 Salmonella enterica strain PNUSAS361377 SAMN36347475-rid18740083.denovo.33, whole genome shotgun sequence	9109..9668																																																						avrA	ABNQWO010000002.1	94091..94960	99.655	870	0						
GCA_032589455.1_PDT001811062.1_genomic.fna	Salmonella_enterica	0.5211	209.377 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,blaCMY-2,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col156,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQWP010000001.1 Salmonella enterica strain PNUSAS361380 SAMN36347478-rid18740073.denovo.01, whole genome shotgun sequence	358433..358870	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNQWP010000027.1 Salmonella enterica strain PNUSAS361380 SAMN36347478-rid18740073.denovo.27, whole genome shotgun sequence	14271..15416	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNQWP010000065.1 Salmonella enterica strain PNUSAS361380 SAMN36347478-rid18740073.guided.42, whole genome shotgun sequence	1346..2491	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	99.91	1146/1146	ABNQWP010000066.1 Salmonella enterica strain PNUSAS361380 SAMN36347478-rid18740073.guided.43, whole genome shotgun sequence	1346..2491	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNQWP010000042.1 Salmonella enterica strain PNUSAS361380 SAMN36347478-rid18740073.denovo.47, whole genome shotgun sequence	3296..4111	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNQWP010000069.1 Salmonella enterica strain PNUSAS361380 SAMN36347478-rid18740073.guided.55, whole genome shotgun sequence	3336..4151	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNQWP010000042.1 Salmonella enterica strain PNUSAS361380 SAMN36347478-rid18740073.denovo.47, whole genome shotgun sequence	6288..7487	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNQWP010000070.1 Salmonella enterica strain PNUSAS361380 SAMN36347478-rid18740073.guided.58, whole genome shotgun sequence	1688..2887	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNQWP010000045.1 Salmonella enterica strain PNUSAS361380 SAMN36347478-rid18740073.denovo.50, whole genome shotgun sequence	1326..1445	enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNQWP010000048.1 Salmonella enterica strain PNUSAS361380 SAMN36347478-rid18740073.denovo.53, whole genome shotgun sequence	371..501		enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNQWP010000049.1 Salmonella enterica strain PNUSAS361380 SAMN36347478-rid18740073.denovo.54, whole genome shotgun sequence	3134..3264		enterobacteriales	Col156	98.03	152 / 154	ABNQWP010000050.1 Salmonella enterica strain PNUSAS361380 SAMN36347478-rid18740073.denovo.56, whole genome shotgun sequence	990..1141		enterobacteriales	IncC	100	417 / 417	ABNQWP010000031.1 Salmonella enterica strain PNUSAS361380 SAMN36347478-rid18740073.denovo.31, whole genome shotgun sequence	38349..38765																											avrA	ABNQWP010000004.1	102350..103219	99.885	870	0						
GCA_032589475.1_PDT001811064.1_genomic.fna	Salmonella_enterica	0.5207	258.365 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQWN010000001.1 Salmonella enterica strain PNUSAS361375 SAMN36347476-rid18740093.denovo.01, whole genome shotgun sequence	800277..800714	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQWN010000038.1 Salmonella enterica strain PNUSAS361375 SAMN36347476-rid18740093.guided.28, whole genome shotgun sequence	2736..3173	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQWN010000002.1	551339..552208	99.195	870	0						
GCA_032589495.1_PDT001811061.1_genomic.fna	Salmonella_enterica	0.5212	406.402 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQWQ010000004.1 Salmonella enterica strain PNUSAS361368 SAMN36347473-rid18740063.denovo.04, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQWQ010000035.1 Salmonella enterica strain PNUSAS361368 SAMN36347473-rid18740063.guided.30, whole genome shotgun sequence	109..546	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQWQ010000022.1 Salmonella enterica strain PNUSAS361368 SAMN36347473-rid18740063.denovo.22, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNQWQ010000024.1 Salmonella enterica strain PNUSAS361368 SAMN36347473-rid18740063.denovo.25, whole genome shotgun sequence	3371..3632																																																avrA	ABNQWQ010000001.1	585611..586480	99.54	870	0						
GCA_032589515.1_PDT001811059.1_genomic.fna	Salmonella_enterica	0.5209	161.404 KB	9	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQWS010000002.1 Salmonella enterica strain PNUSAS361363 SAMN36347469-rid18740043.denovo.02, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQWS010000060.1 Salmonella enterica strain PNUSAS361363 SAMN36347469-rid18740043.guided.30, whole genome shotgun sequence	36194..36631	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNQWS010000024.1 Salmonella enterica strain PNUSAS361363 SAMN36347469-rid18740043.denovo.24, whole genome shotgun sequence	2806..3339																																																						avrA	ABNQWS010000008.1	153842..154711	99.425	870	0						
GCA_032589535.1_PDT001811060.1_genomic.fna	Salmonella_enterica	0.5207	244.176 KB	6	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	5	Col440I,IncFIB(pB171),IncFII(S),IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNQWR010000002.1 Salmonella enterica strain PNUSAS361383 SAMN36347474-rid18740053.denovo.02, whole genome shotgun sequence	239429..239866	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNQWR010000044.1 Salmonella enterica strain PNUSAS361383 SAMN36347474-rid18740053.guided.33, whole genome shotgun sequence	6031..6468	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.23	114 / 114	ABNQWR010000036.1 Salmonella enterica strain PNUSAS361383 SAMN36347474-rid18740053.denovo.39, whole genome shotgun sequence	2454..2567	enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNQWR010000032.1 Salmonella enterica strain PNUSAS361383 SAMN36347474-rid18740053.denovo.34, whole genome shotgun sequence	12011..12653		enterobacteriales	IncFII(S)	94.82	251 / 262	ABNQWR010000021.1 Salmonella enterica strain PNUSAS361383 SAMN36347474-rid18740053.denovo.21, whole genome shotgun sequence	20318..20565		enterobacteriales	IncFII(SARC14)	95.52	446 / 445	ABNQWR010000021.1 Salmonella enterica strain PNUSAS361383 SAMN36347474-rid18740053.denovo.21, whole genome shotgun sequence	19614..20058		enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNQWR010000029.1 Salmonella enterica strain PNUSAS361383 SAMN36347474-rid18740053.denovo.29, whole genome shotgun sequence	10978..11204																																						
GCA_032589555.1_PDT001811058.1_genomic.fna	Salmonella_enterica	0.5215	282.115 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQWT010000001.1 Salmonella enterica strain PNUSAS361364 SAMN36347471-rid18740033.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQWT010000036.1 Salmonella enterica strain PNUSAS361364 SAMN36347471-rid18740033.guided.24, whole genome shotgun sequence	12376..12813	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQWT010000023.1 Salmonella enterica strain PNUSAS361364 SAMN36347471-rid18740033.denovo.25, whole genome shotgun sequence	6823..7465	enterobacteriales	IncFII(S)	100	262 / 262	ABNQWT010000025.1 Salmonella enterica strain PNUSAS361364 SAMN36347471-rid18740033.denovo.28, whole genome shotgun sequence	3380..3641																																																avrA	ABNQWT010000015.1	39351..40220	99.54	870	0						
GCA_032589575.1_PDT001811056.1_genomic.fna	Salmonella_enterica	0.5211	406.18 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNQWV010000001.1 Salmonella enterica strain PNUSAS361365 SAMN36347472-rid18740013.denovo.01, whole genome shotgun sequence	529794..530231	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNQWV010000030.1 Salmonella enterica strain PNUSAS361365 SAMN36347472-rid18740013.guided.16, whole genome shotgun sequence	24977..25414	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNQWV010000020.1 Salmonella enterica strain PNUSAS361365 SAMN36347472-rid18740013.denovo.23, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNQWV010000022.1 Salmonella enterica strain PNUSAS361365 SAMN36347472-rid18740013.denovo.25, whole genome shotgun sequence	3389..3650																																																avrA	ABNQWV010000006.1	175109..175978	99.54	870	0						
GCA_032589595.1_PDT001811057.1_genomic.fna	Salmonella_enterica	0.5224	228.94 KB	8	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNQWU010000001.1 Salmonella enterica strain PNUSAS361366 SAMN36347470-rid18740023.denovo.01, whole genome shotgun sequence	293540..293977	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNQWU010000043.1 Salmonella enterica strain PNUSAS361366 SAMN36347470-rid18740023.guided.30, whole genome shotgun sequence	8438..8875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQWU010000004.1	94166..95034	99.425	870	0						
GCA_032589615.1_PDT001811054.1_genomic.fna	Salmonella_enterica	0.5195	412.551 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQDGH010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1275-1 SAMN35365210-rid18740003.denovo.02, whole genome shotgun sequence	288170..288607	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQDGH010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1275-1 SAMN35365210-rid18740003.guided.22, whole genome shotgun sequence	850..1287	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQDGH010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1275-1 SAMN35365210-rid18740003.denovo.17, whole genome shotgun sequence	36763..37405	enterobacteriales	IncFII(S)	100	262 / 262	DAQDGH010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1275-1 SAMN35365210-rid18740003.denovo.17, whole genome shotgun sequence	42855..43116		enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	DAQDGH010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1275-1 SAMN35365210-rid18740003.denovo.13, whole genome shotgun sequence	9783..9922		enterobacteriales	IncI2(Delta)	98.1	316 / 316	DAQDGH010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1275-1 SAMN35365210-rid18740003.denovo.16, whole genome shotgun sequence	54242..54557																																		avrA	DAQDGH010000001.1	553202..554071	99.54	870	0						
GCA_032589635.1_PDT001811055.1_genomic.fna	Salmonella_enterica	0.5213	478.49 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQDGF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1274-1 SAMN35365209-rid18738633.denovo.01, whole genome shotgun sequence	290468..290905	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQDGF010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1274-1 SAMN35365209-rid18738633.guided.19, whole genome shotgun sequence	1269..1706	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGF010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1274-1 SAMN35365209-rid18738633.denovo.24, whole genome shotgun sequence	1337..1467	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQDGF010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1274-1 SAMN35365209-rid18738633.denovo.13, whole genome shotgun sequence	49285..49927		enterobacteriales	IncFII(S)	100	262 / 262	DAQDGF010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1274-1 SAMN35365209-rid18738633.denovo.13, whole genome shotgun sequence	5032..5293																																									avrA	DAQDGF010000002.1	553475..554344	99.54	870	0						
GCA_032589655.1_PDT001811053.1_genomic.fna	Salmonella_enterica	0.5225	683.161 KB	3	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDGG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1291 SAMN35365219-rid18739993.denovo.01, whole genome shotgun sequence	798267..798704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDGG010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1291 SAMN35365219-rid18739993.guided.27, whole genome shotgun sequence	3649..4086	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGG010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1291 SAMN35365219-rid18739993.denovo.31, whole genome shotgun sequence	1326..1456																																																																	
GCA_032589675.1_PDT001811052.1_genomic.fna	Salmonella_enterica	0.5217	733.122 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDGI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1498 SAMN35365309-rid18739983.denovo.01, whole genome shotgun sequence	836815..837252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDGI010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1498 SAMN35365309-rid18739983.guided.19, whole genome shotgun sequence	1118..1555	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGI010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1498 SAMN35365309-rid18739983.denovo.23, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDGI010000003.1	179904..180773	99.425	870	0						
GCA_032589695.1_PDT001811051.1_genomic.fna	Salmonella_enterica	0.5215	580.344 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDGJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1499 SAMN35365310-rid18739973.denovo.01, whole genome shotgun sequence	159296..159733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDGJ010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1499 SAMN35365310-rid18739973.guided.21, whole genome shotgun sequence	2301..2738	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGJ010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1499 SAMN35365310-rid18739973.denovo.28, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDGJ010000002.1	148776..149645	99.08	870	0						
GCA_032589715.1_PDT001811050.1_genomic.fna	Salmonella_enterica	0.5221	409.464 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDGK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1500 SAMN35365311-rid18738623.denovo.01, whole genome shotgun sequence	402589..403026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDGK010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1500 SAMN35365311-rid18738623.guided.18, whole genome shotgun sequence	2503..2940	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGK010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1500 SAMN35365311-rid18738623.denovo.25, whole genome shotgun sequence	1708..1838																																																																	
GCA_032589735.1_PDT001811049.1_genomic.fna	Salmonella_enterica	0.5206	449.175 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDGL010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1501 SAMN35365312-rid18739963.denovo.03, whole genome shotgun sequence	137619..138056	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDGL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1501 SAMN35365312-rid18739963.guided.26, whole genome shotgun sequence	2152..2589	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGL010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1501 SAMN35365312-rid18739963.denovo.27, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDGL010000005.1	145394..146263	98.966	870	0						
GCA_032589755.1_PDT001811048.1_genomic.fna	Salmonella_enterica	0.5215	507.676 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDGM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1503 SAMN35365313-rid18739953.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDGM010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1503 SAMN35365313-rid18739953.guided.22, whole genome shotgun sequence	1353..1790	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGM010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1503 SAMN35365313-rid18739953.denovo.28, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDGM010000002.1	148776..149645	99.08	870	0						
GCA_032589775.1_PDT001811047.1_genomic.fna	Salmonella_enterica	0.5217	655.069 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDGN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1504 SAMN35365314-rid18739943.denovo.01, whole genome shotgun sequence	836814..837251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDGN010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1504 SAMN35365314-rid18739943.guided.25, whole genome shotgun sequence	1274..1711	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGN010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1504 SAMN35365314-rid18739943.denovo.26, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDGN010000002.1	179904..180773	99.425	870	0						
GCA_032589795.1_PDT001811044.1_genomic.fna	Salmonella_enterica	0.5216	581.133 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDGQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1508 SAMN35365317-rid18739923.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDGQ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1508 SAMN35365317-rid18739923.guided.24, whole genome shotgun sequence	180..617	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGQ010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1508 SAMN35365317-rid18739923.denovo.28, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDGQ010000002.1	147677..148546	99.08	870	0						
GCA_032589815.1_PDT001811045.1_genomic.fna	Salmonella_enterica	0.5215	507.468 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDGP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1507 SAMN35365316-rid18738613.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDGP010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1507 SAMN35365316-rid18738613.guided.23, whole genome shotgun sequence	180..617	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGP010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1507 SAMN35365316-rid18738613.denovo.30, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDGP010000002.1	148776..149645	99.08	870	0						
GCA_032589835.1_PDT001811046.1_genomic.fna	Salmonella_enterica	0.5206	355.886 KB	5	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDGO010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1505 SAMN35365315-rid18739933.denovo.06, whole genome shotgun sequence	154849..155286	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDGO010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1505 SAMN35365315-rid18739933.guided.21, whole genome shotgun sequence	9220..9657	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGO010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1505 SAMN35365315-rid18739933.denovo.26, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDGO010000003.1	145224..146093	98.966	870	0						
GCA_032589855.1_PDT001811043.1_genomic.fna	Salmonella_enterica	0.5223	762.033 KB	3	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDGR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1509 SAMN35365318-rid18739913.denovo.01, whole genome shotgun sequence	375279..375716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDGR010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1509 SAMN35365318-rid18739913.guided.19, whole genome shotgun sequence	1523..1960	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGR010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1509 SAMN35365318-rid18739913.denovo.26, whole genome shotgun sequence	1708..1838																																																																	
GCA_032589875.1_PDT001811041.1_genomic.fna	Salmonella_enterica	0.5221	576.916 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDGS010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1510 SAMN35365319-rid18739893.denovo.04, whole genome shotgun sequence	402966..403403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDGS010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1510 SAMN35365319-rid18739893.guided.23, whole genome shotgun sequence	3387..3824	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGS010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1510 SAMN35365319-rid18739893.denovo.27, whole genome shotgun sequence	1708..1838																																																																	
GCA_032589895.1_PDT001811040.1_genomic.fna	Salmonella_enterica	0.5224	683.161 KB	3	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDGT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1511 SAMN35365320-rid18738603.denovo.01, whole genome shotgun sequence	787268..787705	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDGT010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1511 SAMN35365320-rid18738603.guided.24, whole genome shotgun sequence	3149..3586	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGT010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1511 SAMN35365320-rid18738603.denovo.32, whole genome shotgun sequence	1347..1477																																																																	
GCA_032589915.1_PDT001811039.1_genomic.fna	Salmonella_enterica	0.5216	581.133 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDGU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1512 SAMN35365321-rid18739883.denovo.01, whole genome shotgun sequence	159296..159733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDGU010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1512 SAMN35365321-rid18739883.guided.24, whole genome shotgun sequence	6774..7211	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGU010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1512 SAMN35365321-rid18739883.denovo.30, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDGU010000002.1	148776..149645	99.08	870	0						
GCA_032589935.1_PDT001811038.1_genomic.fna	Salmonella_enterica	0.5215	276.962 KB	6	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDGV010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1514 SAMN35365322-rid18739873.denovo.02, whole genome shotgun sequence	16128..16565	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDGV010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1514 SAMN35365322-rid18739873.guided.43, whole genome shotgun sequence	180..617	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGV010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1514 SAMN35365322-rid18739873.denovo.35, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDGV010000005.1	148776..149645	99.08	870	0						
GCA_032589955.1_PDT001811035.1_genomic.fna	Salmonella_enterica	0.5222	298.201 KB	4	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDGY010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1548 SAMN35365339-rid18739843.denovo.03, whole genome shotgun sequence	488527..488964	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDGY010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1548 SAMN35365339-rid18739843.guided.32, whole genome shotgun sequence	1648..2085	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGY010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1548 SAMN35365339-rid18739843.denovo.38, whole genome shotgun sequence	1708..1838																																																																	
GCA_032589975.1_PDT001811037.1_genomic.fna	Salmonella_enterica	0.5227	547.179 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDGW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1547 SAMN35365338-rid18739863.denovo.01, whole genome shotgun sequence	402966..403403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDGW010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1547 SAMN35365338-rid18739863.guided.20, whole genome shotgun sequence	839..1276	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGW010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1547 SAMN35365338-rid18739863.denovo.26, whole genome shotgun sequence	1708..1838																																																																	
GCA_032589995.1_PDT001811036.1_genomic.fna	Salmonella_enterica	0.5215	733.128 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDGX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1295-1 SAMN35365222-rid18739853.denovo.01, whole genome shotgun sequence	836815..837252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDGX010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1295-1 SAMN35365222-rid18739853.guided.21, whole genome shotgun sequence	3020..3457	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGX010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1295-1 SAMN35365222-rid18739853.denovo.24, whole genome shotgun sequence	1342..1472																																																						avrA	DAQDGX010000003.1	179904..180773	99.425	870	0						
GCA_032590015.1_PDT001811034.1_genomic.fna	Salmonella_enterica	0.5216	507.379 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDGZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1552 SAMN35365340-rid18739833.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDGZ010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1552 SAMN35365340-rid18739833.guided.24, whole genome shotgun sequence	4814..5251	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDGZ010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1552 SAMN35365340-rid18739833.denovo.30, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDGZ010000002.1	148776..149645	99.08	870	0						
GCA_032590035.1_PDT001811033.1_genomic.fna	Salmonella_enterica	0.5222	579.427 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDHA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1553 SAMN35365341-rid18739823.denovo.01, whole genome shotgun sequence	402966..403403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDHA010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1553 SAMN35365341-rid18739823.guided.17, whole genome shotgun sequence	10154..10591	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHA010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1553 SAMN35365341-rid18739823.denovo.24, whole genome shotgun sequence	1708..1838																																																																	
GCA_032590055.1_PDT001811030.1_genomic.fna	Salmonella_enterica	0.5223	579.427 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDHD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1560 SAMN35365344-rid18738593.denovo.01, whole genome shotgun sequence	402966..403403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDHD010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1560 SAMN35365344-rid18738593.guided.16, whole genome shotgun sequence	839..1276	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHD010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1560 SAMN35365344-rid18738593.denovo.24, whole genome shotgun sequence	1708..1838																																																																	
GCA_032590065.1_PDT001811028.1_genomic.fna	Salmonella_enterica	0.5216	319.962 KB	5	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDHF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1562 SAMN35365346-rid18739783.denovo.01, whole genome shotgun sequence	158468..158905	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDHF010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1562 SAMN35365346-rid18739783.guided.23, whole genome shotgun sequence	2660..3097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHF010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1562 SAMN35365346-rid18739783.denovo.30, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDHF010000002.1	148776..149645	99.08	870	0						
GCA_032590095.1_PDT001811032.1_genomic.fna	Salmonella_enterica	0.5208	196.558 KB	8	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDHB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1554 SAMN35365342-rid18739813.denovo.01, whole genome shotgun sequence	180289..180726	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDHB010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1554 SAMN35365342-rid18739813.guided.42, whole genome shotgun sequence	2651..3088	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDHB010000005.1	145521..146390	98.966	870	0						
GCA_032590115.1_PDT001811031.1_genomic.fna	Salmonella_enterica	0.5224	547.327 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDHC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1559 SAMN35365343-rid18739803.denovo.01, whole genome shotgun sequence	402966..403403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQDHC010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1559 SAMN35365343-rid18739803.guided.19, whole genome shotgun sequence	14401..14838	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDHC010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1559 SAMN35365343-rid18739803.guided.20, whole genome shotgun sequence	14401..14838	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHC010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1559 SAMN35365343-rid18739803.denovo.25, whole genome shotgun sequence	1708..1838																																																																	
GCA_032590135.1_PDT001811029.1_genomic.fna	Salmonella_enterica	0.5195	319.553 KB	5	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDHE010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1561 SAMN35365345-rid18739793.denovo.03, whole genome shotgun sequence	180388..180825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDHE010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1561 SAMN35365345-rid18739793.guided.17, whole genome shotgun sequence	1442..1879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDHE010000004.1	145117..145986	98.966	870	0						
GCA_032590155.1_PDT001811026.1_genomic.fna	Salmonella_enterica	0.5216	507.385 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDHH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1565 SAMN35365348-rid18739763.denovo.01, whole genome shotgun sequence	159393..159830	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDHH010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1565 SAMN35365348-rid18739763.guided.25, whole genome shotgun sequence	639..1076	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHH010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1565 SAMN35365348-rid18739763.denovo.31, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDHH010000002.1	148776..149645	99.08	870	0						
GCA_032590175.1_PDT001811027.1_genomic.fna	Salmonella_enterica	0.5206	474.485 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDHG010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1564 SAMN35365347-rid18739773.denovo.03, whole genome shotgun sequence	137363..137800	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDHG010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1564 SAMN35365347-rid18739773.guided.24, whole genome shotgun sequence	507..944	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQDHG010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1564 SAMN35365347-rid18739773.guided.25, whole genome shotgun sequence	507..944	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHG010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1564 SAMN35365347-rid18739773.denovo.34, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDHG010000006.1	39428..40297	98.966	870	0						
GCA_032590195.1_PDT001811025.1_genomic.fna	Salmonella_enterica	0.5218	476.067 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDHI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1296-1 SAMN35365223-rid18739753.denovo.01, whole genome shotgun sequence	666092..666529	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDHI010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1296-1 SAMN35365223-rid18739753.guided.23, whole genome shotgun sequence	1257..1694	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHI010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1296-1 SAMN35365223-rid18739753.denovo.25, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDHI010000003.1	179904..180773	99.425	870	0						
GCA_032590215.1_PDT001811023.1_genomic.fna	Salmonella_enterica	0.5228	480.556 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDHK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1567 SAMN35365350-rid18739733.denovo.01, whole genome shotgun sequence	402966..403403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDHK010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1567 SAMN35365350-rid18739733.guided.19, whole genome shotgun sequence	7088..7525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHK010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1567 SAMN35365350-rid18739733.denovo.25, whole genome shotgun sequence	1708..1838																																																																	
GCA_032590235.1_PDT001811024.1_genomic.fna	Salmonella_enterica	0.5227	700.31 KB	3	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDHJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1566 SAMN35365349-rid18739743.denovo.01, whole genome shotgun sequence	747424..747861	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDHJ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1566 SAMN35365349-rid18739743.guided.15, whole genome shotgun sequence	9298..9735	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHJ010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1566 SAMN35365349-rid18739743.denovo.23, whole genome shotgun sequence	1708..1838																																																																	
GCA_032590255.1_PDT001811022.1_genomic.fna	Salmonella_enterica	0.5214	581.133 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDHL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1569 SAMN35365351-rid18739723.denovo.01, whole genome shotgun sequence	159797..160234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.88	357/438	DAQDHL010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1569 SAMN35365351-rid18739723.guided.23, whole genome shotgun sequence	1..357	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHL010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1569 SAMN35365351-rid18739723.denovo.30, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDHL010000002.1	147677..148546	99.08	870	0						
GCA_032590275.1_PDT001811020.1_genomic.fna	Salmonella_enterica	0.5224	579.099 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDHN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1576 SAMN35365353-rid18738583.denovo.01, whole genome shotgun sequence	403419..403856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDHN010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1576 SAMN35365353-rid18738583.guided.16, whole genome shotgun sequence	207..644	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHN010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1576 SAMN35365353-rid18738583.denovo.24, whole genome shotgun sequence	1708..1838																																																																	
GCA_032590295.1_PDT001811021.1_genomic.fna	Salmonella_enterica	0.5215	440.751 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDHM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1572 SAMN35365352-rid18739713.denovo.01, whole genome shotgun sequence	836814..837251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDHM010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1572 SAMN35365352-rid18739713.guided.17, whole genome shotgun sequence	14988..15425	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHM010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1572 SAMN35365352-rid18739713.denovo.25, whole genome shotgun sequence	438..568																																																						avrA	DAQDHM010000002.1	179904..180773	99.425	870	0						
GCA_032590315.1_PDT001811018.1_genomic.fna	Salmonella_enterica	0.5217	507.807 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDHP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1578 SAMN35365355-rid18739693.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDHP010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1578 SAMN35365355-rid18739693.guided.21, whole genome shotgun sequence	7828..8265	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHP010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1578 SAMN35365355-rid18739693.denovo.28, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDHP010000002.1	148785..149654	99.08	870	0						
GCA_032590335.1_PDT001811017.1_genomic.fna	Salmonella_enterica	0.5195	312.805 KB	5	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDHQ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1579 SAMN35365356-rid18739683.denovo.03, whole genome shotgun sequence	180388..180825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDHQ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1579 SAMN35365356-rid18739683.guided.16, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDHQ010000006.1	39428..40297	98.966	870	0						
GCA_032590355.1_PDT001811019.1_genomic.fna	Salmonella_enterica	0.5224	683.161 KB	3	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDHO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1577 SAMN35365354-rid18739703.denovo.01, whole genome shotgun sequence	786979..787416	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDHO010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1577 SAMN35365354-rid18739703.guided.36, whole genome shotgun sequence	207..644	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHO010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1577 SAMN35365354-rid18739703.denovo.34, whole genome shotgun sequence	1347..1477																																																																	
GCA_032590375.1_PDT001811016.1_genomic.fna	Salmonella_enterica	0.5216	518.923 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDHR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1580 SAMN35365357-rid18739673.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDHR010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1580 SAMN35365357-rid18739673.guided.24, whole genome shotgun sequence	2557..2994	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHR010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1580 SAMN35365357-rid18739673.denovo.32, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDHR010000003.1	95501..96370	99.08	870	0						
GCA_032590395.1_PDT001811014.1_genomic.fna	Salmonella_enterica	0.5211	478.49 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQDHS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1297 SAMN35365224-rid18739653.denovo.01, whole genome shotgun sequence	290468..290905	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQDHS010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1297 SAMN35365224-rid18739653.guided.16, whole genome shotgun sequence	31848..32285	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQDHS010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1297 SAMN35365224-rid18739653.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	DAQDHS010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1297 SAMN35365224-rid18739653.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	DAQDHS010000002.1	553475..554344	99.54	870	0						
GCA_032590415.1_PDT001811015.1_genomic.fna	Salmonella_enterica	0.5215	476.082 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDHT010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1583 SAMN35365358-rid18739663.denovo.05, whole genome shotgun sequence	176326..176763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDHT010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1583 SAMN35365358-rid18739663.guided.19, whole genome shotgun sequence	17036..17473	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHT010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1583 SAMN35365358-rid18739663.denovo.27, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDHT010000002.1	179904..180773	99.425	870	0						
GCA_032590435.1_PDT001811013.1_genomic.fna	Salmonella_enterica	0.5216	580.705 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDHU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1584 SAMN35365359-rid18739643.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDHU010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1584 SAMN35365359-rid18739643.guided.22, whole genome shotgun sequence	180..617	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHU010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1584 SAMN35365359-rid18739643.denovo.28, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDHU010000002.1	148776..149645	99.08	870	0						
GCA_032590455.1_PDT001811012.1_genomic.fna	Salmonella_enterica	0.5216	732.543 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDHV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1585 SAMN35365360-rid18739633.denovo.01, whole genome shotgun sequence	836814..837251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDHV010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1585 SAMN35365360-rid18739633.guided.17, whole genome shotgun sequence	10467..10904	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHV010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1585 SAMN35365360-rid18739633.denovo.24, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDHV010000003.1	179904..180773	99.425	870	0						
GCA_032590475.1_PDT001811011.1_genomic.fna	Salmonella_enterica	0.5215	518.584 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDHW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1586 SAMN35365361-rid18739623.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDHW010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1586 SAMN35365361-rid18739623.guided.22, whole genome shotgun sequence	639..1076	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHW010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1586 SAMN35365361-rid18739623.denovo.28, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDHW010000002.1	148776..149645	99.08	870	0						
GCA_032590495.1_PDT001811010.1_genomic.fna	Salmonella_enterica	0.5223	579.427 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDHX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1587 SAMN35365362-rid18738573.denovo.01, whole genome shotgun sequence	402966..403403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDHX010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1587 SAMN35365362-rid18738573.guided.16, whole genome shotgun sequence	4882..5319	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHX010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1587 SAMN35365362-rid18738573.denovo.23, whole genome shotgun sequence	1708..1838																																																																	
GCA_032590515.1_PDT001811009.1_genomic.fna	Salmonella_enterica	0.5224	254.05 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDHY010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1588 SAMN35365363-rid18739613.denovo.04, whole genome shotgun sequence	223145..223582	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDHY010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1588 SAMN35365363-rid18739613.guided.34, whole genome shotgun sequence	1152..1589	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHY010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1588 SAMN35365363-rid18739613.denovo.37, whole genome shotgun sequence	1708..1838																																																																	
GCA_032590535.1_PDT001811008.1_genomic.fna	Salmonella_enterica	0.5216	580.701 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDHZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1589 SAMN35365364-rid18739603.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDHZ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1589 SAMN35365364-rid18739603.guided.21, whole genome shotgun sequence	698..1135	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDHZ010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1589 SAMN35365364-rid18739603.denovo.26, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDHZ010000002.1	148776..149645	99.08	870	0						
GCA_032590555.1_PDT001811006.1_genomic.fna	Salmonella_enterica	0.5216	450.121 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDIB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1594 SAMN35365366-rid18739583.denovo.01, whole genome shotgun sequence	159296..159733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDIB010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1594 SAMN35365366-rid18739583.guided.25, whole genome shotgun sequence	1353..1790	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIB010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1594 SAMN35365366-rid18739583.denovo.29, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDIB010000002.1	148776..149645	99.08	870	0						
GCA_032590575.1_PDT001811005.1_genomic.fna	Salmonella_enterica	0.5224	362.156 KB	4	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDIC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1287-2 SAMN35365214-rid18739573.denovo.01, whole genome shotgun sequence	796499..796936	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDIC010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1287-2 SAMN35365214-rid18739573.guided.36, whole genome shotgun sequence	507..944	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIC010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1287-2 SAMN35365214-rid18739573.denovo.32, whole genome shotgun sequence	1708..1838																																																																	
GCA_032590595.1_PDT001811007.1_genomic.fna	Salmonella_enterica	0.5212	733.122 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDIA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1590 SAMN35365365-rid18739593.denovo.01, whole genome shotgun sequence	837858..838295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDIA010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1590 SAMN35365365-rid18739593.guided.21, whole genome shotgun sequence	9979..10416	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIA010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1590 SAMN35365365-rid18739593.denovo.26, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDIA010000003.1	179904..180773	99.425	870	0						
GCA_032590615.1_PDT001811002.1_genomic.fna	Salmonella_enterica	0.5217	428.692 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDIF010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1419 SAMN35365261-rid18739543.denovo.06, whole genome shotgun sequence	176326..176763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDIF010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1419 SAMN35365261-rid18739543.guided.23, whole genome shotgun sequence	1726..2163	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIF010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1419 SAMN35365261-rid18739543.denovo.27, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDIF010000001.1	39349..40218	99.425	870	0						
GCA_032590635.1_PDT001811001.1_genomic.fna	Salmonella_enterica	0.5217	686.3 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDIG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1428-1 SAMN35365262-rid18739533.denovo.01, whole genome shotgun sequence	836815..837252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDIG010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1428-1 SAMN35365262-rid18739533.guided.20, whole genome shotgun sequence	2659..3096	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIG010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1428-1 SAMN35365262-rid18739533.denovo.24, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDIG010000003.1	179904..180773	99.425	870	0						
GCA_032590655.1_PDT001811000.1_genomic.fna	Salmonella_enterica	0.5205	293.651 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDIH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Agona strain LJH1429 SAMN35365263-rid18738563.denovo.01, whole genome shotgun sequence	135628..136065	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDIH010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Agona strain LJH1429 SAMN35365263-rid18738563.guided.35, whole genome shotgun sequence	774..1211	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDIH010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Agona strain LJH1429 SAMN35365263-rid18738563.guided.36, whole genome shotgun sequence	774..1211	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	DAQDIH010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Agona strain LJH1429 SAMN35365263-rid18738563.denovo.04, whole genome shotgun sequence	27816..28238	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	DAQDIH010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Agona strain LJH1429 SAMN35365263-rid18738563.guided.32, whole genome shotgun sequence	4274..4696	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIH010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Agona strain LJH1429 SAMN35365263-rid18738563.denovo.40, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDIH010000003.1	39348..40217	99.195	870	0						
GCA_032590675.1_PDT001810998.1_genomic.fna	Salmonella_enterica	0.5216	733.128 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDIJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1432-2 SAMN35365265-rid18739513.denovo.01, whole genome shotgun sequence	1313040..1313477	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDIJ010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1432-2 SAMN35365265-rid18739513.guided.18, whole genome shotgun sequence	2814..3251	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIJ010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1432-2 SAMN35365265-rid18739513.denovo.22, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDIJ010000003.1	179904..180773	99.425	870	0						
GCA_032590695.1_PDT001810999.1_genomic.fna	Salmonella_enterica	0.5219	446.892 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDII010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1430 SAMN35365264-rid18739523.denovo.06, whole genome shotgun sequence	176326..176763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDII010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1430 SAMN35365264-rid18739523.guided.20, whole genome shotgun sequence	4387..4824	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDII010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1430 SAMN35365264-rid18739523.denovo.26, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDII010000002.1	179904..180773	99.425	870	0						
GCA_032590715.1_PDT001810997.1_genomic.fna	Salmonella_enterica	0.5215	732.581 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDIK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1433 SAMN35365266-rid18739503.denovo.01, whole genome shotgun sequence	836815..837252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDIK010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1433 SAMN35365266-rid18739503.guided.13, whole genome shotgun sequence	19675..20112	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIK010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1433 SAMN35365266-rid18739503.denovo.20, whole genome shotgun sequence	438..568																																																						avrA	DAQDIK010000003.1	179904..180773	99.425	870	0						
GCA_032590735.1_PDT001811004.1_genomic.fna	Salmonella_enterica	0.5214	346.953 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDID010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1417 SAMN35365259-rid18739563.denovo.05, whole genome shotgun sequence	176326..176763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDID010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1417 SAMN35365259-rid18739563.guided.20, whole genome shotgun sequence	21417..21854	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDID010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1417 SAMN35365259-rid18739563.denovo.29, whole genome shotgun sequence	429..559																																																						avrA	DAQDID010000001.1	179904..180773	99.425	870	0						
GCA_032590755.1_PDT001811003.1_genomic.fna	Salmonella_enterica	0.5214	440.751 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDIE010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1418 SAMN35365260-rid18739553.denovo.05, whole genome shotgun sequence	176326..176763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDIE010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1418 SAMN35365260-rid18739553.guided.22, whole genome shotgun sequence	10675..11112	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIE010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1418 SAMN35365260-rid18739553.denovo.27, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDIE010000002.1	179904..180773	99.425	870	0						
GCA_032590775.1_PDT001810995.1_genomic.fna	Salmonella_enterica	0.522	511.455 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDIM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1435 SAMN35365268-rid18738553.denovo.01, whole genome shotgun sequence	1312770..1313207	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDIM010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1435 SAMN35365268-rid18738553.guided.18, whole genome shotgun sequence	11590..12027	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIM010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1435 SAMN35365268-rid18738553.denovo.24, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDIM010000002.1	179904..180773	99.425	870	0						
GCA_032590795.1_PDT001810993.1_genomic.fna	Salmonella_enterica	0.5196	319.554 KB	5	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDIO010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1437-1 SAMN35365269-rid18739473.denovo.06, whole genome shotgun sequence	155185..155622	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDIO010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1437-1 SAMN35365269-rid18739473.guided.19, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDIO010000003.1	145117..145986	98.966	870	0						
GCA_032590815.1_PDT001810991.1_genomic.fna	Salmonella_enterica	0.5215	422.551 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDIQ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1439-1 SAMN35365271-rid18739453.denovo.06, whole genome shotgun sequence	176494..176931	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDIQ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1439-1 SAMN35365271-rid18739453.guided.28, whole genome shotgun sequence	360..797	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIQ010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1439-1 SAMN35365271-rid18739453.denovo.29, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDIQ010000001.1	179904..180773	99.425	870	0						
GCA_032590835.1_PDT001810996.1_genomic.fna	Salmonella_enterica	0.522	347.296 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDIL010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1434 SAMN35365267-rid18739493.denovo.05, whole genome shotgun sequence	176492..176929	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDIL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1434 SAMN35365267-rid18739493.guided.27, whole genome shotgun sequence	1442..1879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIL010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1434 SAMN35365267-rid18739493.denovo.28, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDIL010000001.1	179727..180596	99.425	870	0						
GCA_032590855.1_PDT001810994.1_genomic.fna	Salmonella_enterica	0.5216	507.471 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDIN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1288 SAMN35365215-rid18739483.denovo.01, whole genome shotgun sequence	480516..480953	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDIN010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1288 SAMN35365215-rid18739483.guided.22, whole genome shotgun sequence	3971..4408	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIN010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1288 SAMN35365215-rid18739483.denovo.29, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDIN010000002.1	148776..149645	99.08	870	0						
GCA_032590875.1_PDT001810992.1_genomic.fna	Salmonella_enterica	0.5209	478.489 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQDIP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1438-1 SAMN35365270-rid18739463.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQDIP010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1438-1 SAMN35365270-rid18739463.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQDIP010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1438-1 SAMN35365270-rid18739463.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	DAQDIP010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1438-1 SAMN35365270-rid18739463.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	DAQDIP010000002.1	553611..554480	99.54	870	0						
GCA_032590895.1_PDT001810989.1_genomic.fna	Salmonella_enterica	0.5224	547.53 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDIS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1515 SAMN35365323-rid18739443.denovo.01, whole genome shotgun sequence	403419..403856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDIS010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1515 SAMN35365323-rid18739443.guided.18, whole genome shotgun sequence	3332..3769	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIS010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1515 SAMN35365323-rid18739443.denovo.25, whole genome shotgun sequence	1708..1838																																																																	
GCA_032590915.1_PDT001810990.1_genomic.fna	Salmonella_enterica	0.5214	347.068 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDIR010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1440 SAMN35365272-rid18738543.denovo.05, whole genome shotgun sequence	176527..176964	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDIR010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1440 SAMN35365272-rid18738543.guided.21, whole genome shotgun sequence	1685..2122	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIR010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1440 SAMN35365272-rid18738543.denovo.28, whole genome shotgun sequence	430..560																																																						avrA	DAQDIR010000001.1	179904..180773	99.425	870	0						
GCA_032590935.1_PDT001810988.1_genomic.fna	Salmonella_enterica	0.5221	683.161 KB	3	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDIT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1516 SAMN35365324-rid18739433.denovo.01, whole genome shotgun sequence	787079..787516	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDIT010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1516 SAMN35365324-rid18739433.guided.25, whole genome shotgun sequence	3196..3633	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIT010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1516 SAMN35365324-rid18739433.denovo.32, whole genome shotgun sequence	1708..1838																																																																	
GCA_032590955.1_PDT001810987.1_genomic.fna	Salmonella_enterica	0.5216	319.962 KB	5	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDIU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1517 SAMN35365325-rid18739423.denovo.01, whole genome shotgun sequence	159296..159733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDIU010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1517 SAMN35365325-rid18739423.guided.25, whole genome shotgun sequence	7139..7576	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIU010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1517 SAMN35365325-rid18739423.denovo.33, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDIU010000002.1	148776..149645	99.08	870	0						
GCA_032590975.1_PDT001810985.1_genomic.fna	Salmonella_enterica	0.5216	518.923 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDIW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1520 SAMN35365327-rid18738533.denovo.01, whole genome shotgun sequence	159296..159733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDIW010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1520 SAMN35365327-rid18738533.guided.27, whole genome shotgun sequence	180..617	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIW010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1520 SAMN35365327-rid18738533.denovo.30, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDIW010000002.1	148776..149645	99.08	870	0						
GCA_032590995.1_PDT001810984.1_genomic.fna	Salmonella_enterica	0.5224	254.477 KB	4	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDIX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1522 SAMN35365328-rid18739403.denovo.01, whole genome shotgun sequence	796499..796936	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDIX010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1522 SAMN35365328-rid18739403.guided.30, whole genome shotgun sequence	639..1076	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIX010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1522 SAMN35365328-rid18739403.denovo.35, whole genome shotgun sequence	1708..1838																																																																	
GCA_032591015.1_PDT001810986.1_genomic.fna	Salmonella_enterica	0.5216	507.807 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDIV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1519 SAMN35365326-rid18739413.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDIV010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1519 SAMN35365326-rid18739413.guided.22, whole genome shotgun sequence	4683..5120	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIV010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1519 SAMN35365326-rid18739413.denovo.26, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDIV010000002.1	148776..149645	99.08	870	0						
GCA_032591035.1_PDT001810982.1_genomic.fna	Salmonella_enterica	0.5222	409.464 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDIZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1523 SAMN35365329-rid18739393.denovo.01, whole genome shotgun sequence	402966..403403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDIZ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1523 SAMN35365329-rid18739393.guided.17, whole genome shotgun sequence	8920..9357	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDIZ010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1523 SAMN35365329-rid18739393.denovo.24, whole genome shotgun sequence	1708..1838																																																																	
GCA_032591055.1_PDT001810983.1_genomic.fna	Salmonella_enterica	0.5211	92.436 KB	17	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDIY010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1293-1 SAMN35365221-rid18738523.denovo.027, whole genome shotgun sequence	12440..12877	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDIY010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1293-1 SAMN35365221-rid18738523.guided.080, whole genome shotgun sequence	3414..3851	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDIY010000002.1	145394..146263	98.966	870	0						
GCA_032591075.1_PDT001810979.1_genomic.fna	Salmonella_enterica	0.5224	313.271 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDJC010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1530 SAMN35365332-rid18739373.denovo.04, whole genome shotgun sequence	223145..223582	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJC010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1530 SAMN35365332-rid18739373.denovo.33, whole genome shotgun sequence	1708..1838																																																																	
GCA_032591085.1_PDT001810980.1_genomic.fna	Salmonella_enterica	0.5216	507.42 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDJB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1529 SAMN35365331-rid18738513.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDJB010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1529 SAMN35365331-rid18738513.guided.22, whole genome shotgun sequence	180..617	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJB010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1529 SAMN35365331-rid18738513.denovo.28, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDJB010000003.1	95501..96370	99.08	870	0						
GCA_032591115.1_PDT001810981.1_genomic.fna	Salmonella_enterica	0.5221	362.156 KB	4	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDJA010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1525 SAMN35365330-rid18739383.denovo.03, whole genome shotgun sequence	488527..488964	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDJA010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1525 SAMN35365330-rid18739383.guided.26, whole genome shotgun sequence	7063..7500	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJA010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1525 SAMN35365330-rid18739383.denovo.36, whole genome shotgun sequence	1326..1456																																																																	
GCA_032591135.1_PDT001810977.1_genomic.fna	Salmonella_enterica	0.5215	449.99 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDJE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1535 SAMN35365334-rid18739363.denovo.01, whole genome shotgun sequence	159296..159733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDJE010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1535 SAMN35365334-rid18739363.guided.25, whole genome shotgun sequence	975..1412	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJE010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1535 SAMN35365334-rid18739363.denovo.30, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDJE010000002.1	148776..149645	99.08	870	0						
GCA_032591155.1_PDT001810978.1_genomic.fna	Salmonella_enterica	0.5217	733.122 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDJD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1534 SAMN35365333-rid18738503.denovo.01, whole genome shotgun sequence	836815..837252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDJD010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1534 SAMN35365333-rid18738503.guided.18, whole genome shotgun sequence	8649..9086	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJD010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1534 SAMN35365333-rid18738503.denovo.22, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDJD010000003.1	179904..180773	99.425	870	0						
GCA_032591175.1_PDT001810976.1_genomic.fna	Salmonella_enterica	0.5233	55.689 KB	28	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDJF010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1537-1 SAMN35365335-rid18739353.denovo.060, whole genome shotgun sequence	12473..12910	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDJF010000157.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1537-1 SAMN35365335-rid18739353.guided.124, whole genome shotgun sequence	59..496	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032591195.1_PDT001810975.1_genomic.fna	Salmonella_enterica	0.5193	310.017 KB	5	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDJG010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1538-1 SAMN35365336-rid18738493.denovo.03, whole genome shotgun sequence	180443..180880	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDJG010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1538-1 SAMN35365336-rid18738493.guided.16, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDJG010000006.1	39534..40403	98.966	870	0						
GCA_032591215.1_PDT001810974.1_genomic.fna	Salmonella_enterica	0.5224	36.956 KB	39	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	-:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	-	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,s,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDJH010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1539-1 SAMN35365337-rid18739343.denovo.058, whole genome shotgun sequence	15403..15840	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDJH010000238.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1539-1 SAMN35365337-rid18739343.guided.206, whole genome shotgun sequence	270..707	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDJH010000010.1	61444..62313	98.966	870	0						
GCA_032591235.1_PDT001810973.1_genomic.fna	Salmonella_enterica	0.5224	327.67 KB	5	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDJI010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1595 SAMN35365367-rid18738483.denovo.05, whole genome shotgun sequence	153441..153878	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDJI010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1595 SAMN35365367-rid18738483.guided.21, whole genome shotgun sequence	5617..6054	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJI010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1595 SAMN35365367-rid18738483.denovo.30, whole genome shotgun sequence	1708..1838																																																																	
GCA_032591255.1_PDT001810972.1_genomic.fna	Salmonella_enterica	0.5215	518.584 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDJJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1596 SAMN35365368-rid18739333.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDJJ010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1596 SAMN35365368-rid18739333.guided.23, whole genome shotgun sequence	1152..1589	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJJ010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1596 SAMN35365368-rid18739333.denovo.28, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDJJ010000002.1	148776..149645	99.08	870	0						
GCA_032591275.1_PDT001810971.1_genomic.fna	Salmonella_enterica	0.5216	507.807 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDJK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1298 SAMN35365225-rid18739323.denovo.01, whole genome shotgun sequence	159296..159733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.88	357/438	DAQDJK010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1298 SAMN35365225-rid18739323.guided.21, whole genome shotgun sequence	1..357	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJK010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1298 SAMN35365225-rid18739323.denovo.27, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDJK010000002.1	148776..149645	99.08	870	0						
GCA_032591295.1_PDT001810970.1_genomic.fna	Salmonella_enterica	0.5216	336.986 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDJL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1597 SAMN35365369-rid18738473.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDJL010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1597 SAMN35365369-rid18738473.guided.27, whole genome shotgun sequence	1487..1924	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJL010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1597 SAMN35365369-rid18738473.denovo.29, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDJL010000002.1	148776..149645	99.08	870	0						
GCA_032591315.1_PDT001810966.1_genomic.fna	Salmonella_enterica	0.5222	399.926 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDJP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1603 SAMN35365373-rid18739293.denovo.01, whole genome shotgun sequence	402966..403403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDJP010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1603 SAMN35365373-rid18739293.guided.18, whole genome shotgun sequence	2153..2590	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJP010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1603 SAMN35365373-rid18739293.denovo.26, whole genome shotgun sequence	1708..1838																																																																	
GCA_032591335.1_PDT001810967.1_genomic.fna	Salmonella_enterica	0.5217	422.551 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDJO010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1602 SAMN35365372-rid18739303.denovo.06, whole genome shotgun sequence	176326..176763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDJO010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1602 SAMN35365372-rid18739303.guided.22, whole genome shotgun sequence	10502..10939	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJO010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1602 SAMN35365372-rid18739303.denovo.28, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDJO010000001.1	179904..180773	99.425	870	0						
GCA_032591355.1_PDT001810969.1_genomic.fna	Salmonella_enterica	0.5224	409.464 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDJM010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1598 SAMN35365370-rid18739313.denovo.05, whole genome shotgun sequence	217648..218085	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDJM010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1598 SAMN35365370-rid18739313.guided.19, whole genome shotgun sequence	129..566	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJM010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1598 SAMN35365370-rid18739313.denovo.25, whole genome shotgun sequence	1708..1838																																																																	
GCA_032591375.1_PDT001810968.1_genomic.fna	Salmonella_enterica	0.5223	260.056 KB	6	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDJN010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1601 SAMN35365371-rid18738463.denovo.05, whole genome shotgun sequence	153097..153534	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDJN010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1601 SAMN35365371-rid18738463.guided.28, whole genome shotgun sequence	1910..2347	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJN010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1601 SAMN35365371-rid18738463.denovo.33, whole genome shotgun sequence	1708..1838																																																																	
GCA_032591395.1_PDT001810965.1_genomic.fna	Salmonella_enterica	0.5214	422.551 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDJQ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1606 SAMN35365374-rid18738453.denovo.06, whole genome shotgun sequence	176326..176763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDJQ010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1606 SAMN35365374-rid18738453.guided.22, whole genome shotgun sequence	15043..15480	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJQ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1606 SAMN35365374-rid18738453.denovo.26, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDJQ010000001.1	179904..180773	99.425	870	0						
GCA_032591415.1_PDT001810964.1_genomic.fna	Salmonella_enterica	0.5215	518.923 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDJR010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1608 SAMN35365375-rid18739283.denovo.08, whole genome shotgun sequence	80075..80512	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.88	357/438	DAQDJR010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1608 SAMN35365375-rid18739283.guided.24, whole genome shotgun sequence	1..357	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJR010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1608 SAMN35365375-rid18739283.denovo.31, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDJR010000002.1	148776..149645	99.08	870	0						
GCA_032591435.1_PDT001810963.1_genomic.fna	Salmonella_enterica	0.5222	579.427 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDJS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1609 SAMN35365376-rid18738443.denovo.01, whole genome shotgun sequence	403419..403856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDJS010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1609 SAMN35365376-rid18738443.guided.15, whole genome shotgun sequence	2605..3042	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJS010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1609 SAMN35365376-rid18738443.denovo.25, whole genome shotgun sequence	1708..1838																																																																	
GCA_032591455.1_PDT001810958.1_genomic.fna	Salmonella_enterica	0.5215	422.551 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDJY010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1279-2 SAMN35365211-rid18739233.denovo.06, whole genome shotgun sequence	176752..177189	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDJY010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1279-2 SAMN35365211-rid18739233.guided.22, whole genome shotgun sequence	10292..10729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJY010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1279-2 SAMN35365211-rid18739233.denovo.27, whole genome shotgun sequence	1337..1467																																																						avrA	DAQDJY010000001.1	179904..180773	99.425	870	0						
GCA_032591475.1_PDT001810962.1_genomic.fna	Salmonella_enterica	0.5198	524.9 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDJT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1610 SAMN35365377-rid18739273.denovo.01, whole genome shotgun sequence	493245..493682	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDJT010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1610 SAMN35365377-rid18739273.guided.17, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDJT010000004.1	145434..146303	98.966	870	0						
GCA_032591495.1_PDT001810959.1_genomic.fna	Salmonella_enterica	0.5216	507.39 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDJW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1302 SAMN35365228-rid18739243.denovo.01, whole genome shotgun sequence	159797..160234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDJW010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1302 SAMN35365228-rid18739243.guided.29, whole genome shotgun sequence	2760..3197	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJW010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1302 SAMN35365228-rid18739243.denovo.31, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDJW010000002.1	148776..149645	99.08	870	0						
GCA_032591515.1_PDT001810961.1_genomic.fna	Salmonella_enterica	0.5214	733.122 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDJU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1299 SAMN35365226-rid18739263.denovo.01, whole genome shotgun sequence	836942..837379	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDJU010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1299 SAMN35365226-rid18739263.guided.21, whole genome shotgun sequence	6193..6630	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJU010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1299 SAMN35365226-rid18739263.denovo.26, whole genome shotgun sequence	1347..1477																																																						avrA	DAQDJU010000003.1	179904..180773	99.425	870	0						
GCA_032591525.1_PDT001810960.1_genomic.fna	Salmonella_enterica	0.5225	262.891 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDJV010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1301 SAMN35365227-rid18739253.denovo.02, whole genome shotgun sequence	488527..488964	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDJV010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1301 SAMN35365227-rid18739253.guided.25, whole genome shotgun sequence	3196..3633	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJV010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1301 SAMN35365227-rid18739253.denovo.36, whole genome shotgun sequence	1708..1838																																																																	
GCA_032591555.1_PDT001810957.1_genomic.fna	Salmonella_enterica	0.5218	440.751 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDJX010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1362 SAMN35365244-rid18739223.denovo.06, whole genome shotgun sequence	222433..222870	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDJX010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1362 SAMN35365244-rid18739223.guided.18, whole genome shotgun sequence	14405..14842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJX010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1362 SAMN35365244-rid18739223.denovo.25, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDJX010000002.1	179904..180773	99.425	870	0						
GCA_032591575.1_PDT001810955.1_genomic.fna	Salmonella_enterica	0.5218	475.797 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1364 SAMN35365246-rid18739203.denovo.01, whole genome shotgun sequence	836815..837252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKA010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1364 SAMN35365246-rid18739203.guided.23, whole genome shotgun sequence	639..1076	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKA010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1364 SAMN35365246-rid18739203.denovo.25, whole genome shotgun sequence	1326..1456																																																						avrA	DAQDKA010000002.1	179904..180773	99.425	870	0						
GCA_032591595.1_PDT001810956.1_genomic.fna	Salmonella_enterica	0.5223	243.516 KB	4	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDJZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1363 SAMN35365245-rid18739213.denovo.01, whole genome shotgun sequence	786981..787418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDJZ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1363 SAMN35365245-rid18739213.guided.31, whole genome shotgun sequence	1965..2402	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDJZ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1363 SAMN35365245-rid18739213.denovo.34, whole genome shotgun sequence	1708..1838																																																																	
GCA_032591615.1_PDT001810954.1_genomic.fna	Salmonella_enterica	0.5212	440.751 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1373 SAMN35365247-rid18739193.denovo.01, whole genome shotgun sequence	578993..579430	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKC010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1373 SAMN35365247-rid18739193.guided.19, whole genome shotgun sequence	277..714	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKC010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1373 SAMN35365247-rid18739193.denovo.25, whole genome shotgun sequence	438..568																																																						avrA	DAQDKC010000003.1	179904..180773	99.425	870	0						
GCA_032591635.1_PDT001810950.1_genomic.fna	Salmonella_enterica	0.5214	440.751 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKG010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1392 SAMN35365250-rid18739163.denovo.06, whole genome shotgun sequence	176527..176964	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKG010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1392 SAMN35365250-rid18739163.guided.16, whole genome shotgun sequence	9829..10266	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKG010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1392 SAMN35365250-rid18739163.denovo.26, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDKG010000002.1	179904..180773	99.425	870	0						
GCA_032591655.1_PDT001810952.1_genomic.fna	Salmonella_enterica	0.5233	49.203 KB	29	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKD010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1281-1 SAMN35365213-rid18739183.denovo.058, whole genome shotgun sequence	15391..15828	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKD010000184.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1281-1 SAMN35365213-rid18739183.guided.145, whole genome shotgun sequence	961..1398	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032591675.1_PDT001810953.1_genomic.fna	Salmonella_enterica	0.5217	446.892 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKB010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1383 SAMN35365248-rid18738433.denovo.06, whole genome shotgun sequence	176488..176925	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKB010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1383 SAMN35365248-rid18738433.guided.20, whole genome shotgun sequence	8179..8616	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKB010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1383 SAMN35365248-rid18738433.denovo.25, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDKB010000002.1	179904..180773	99.425	870	0						
GCA_032591695.1_PDT001810951.1_genomic.fna	Salmonella_enterica	0.5215	440.751 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1384 SAMN35365249-rid18739173.denovo.01, whole genome shotgun sequence	579043..579480	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKF010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1384 SAMN35365249-rid18739173.guided.20, whole genome shotgun sequence	15089..15526	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKF010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1384 SAMN35365249-rid18739173.denovo.27, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDKF010000003.1	179904..180773	99.425	870	0						
GCA_032591715.1_PDT001810949.1_genomic.fna	Salmonella_enterica	0.5218	440.751 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKE010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1393 SAMN35365251-rid18739153.denovo.06, whole genome shotgun sequence	222345..222782	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKE010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1393 SAMN35365251-rid18739153.guided.18, whole genome shotgun sequence	7840..8277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKE010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1393 SAMN35365251-rid18739153.denovo.23, whole genome shotgun sequence	1725..1855																																																						avrA	DAQDKE010000003.1	39458..40327	99.425	870	0						
GCA_032591735.1_PDT001810948.1_genomic.fna	Salmonella_enterica	0.5217	428.692 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKH010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1397 SAMN35365252-rid18739143.denovo.08, whole genome shotgun sequence	176326..176763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKH010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1397 SAMN35365252-rid18739143.guided.25, whole genome shotgun sequence	4270..4707	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	95	120 / 131	DAQDKH010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1397 SAMN35365252-rid18739143.denovo.28, whole genome shotgun sequence	1984..2103																																																						avrA	DAQDKH010000002.1	179904..180773	99.425	870	0						
GCA_032591755.1_PDT001810946.1_genomic.fna	Salmonella_enterica	0.5224	683.161 KB	3	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1405 SAMN35365254-rid18739123.denovo.01, whole genome shotgun sequence	786973..787410	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKK010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1405 SAMN35365254-rid18739123.guided.25, whole genome shotgun sequence	3196..3633	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKK010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1405 SAMN35365254-rid18739123.denovo.34, whole genome shotgun sequence	1347..1477																																																																	
GCA_032591775.1_PDT001810947.1_genomic.fna	Salmonella_enterica	0.5214	440.751 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKI010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1398 SAMN35365253-rid18739133.denovo.06, whole genome shotgun sequence	176486..176923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKI010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1398 SAMN35365253-rid18739133.guided.22, whole genome shotgun sequence	8423..8860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKI010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1398 SAMN35365253-rid18739133.denovo.27, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDKI010000002.1	179904..180773	99.425	870	0						
GCA_032591795.1_PDT001810945.1_genomic.fna	Salmonella_enterica	0.5216	450.204 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDKJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1406 SAMN35365255-rid18739113.denovo.01, whole genome shotgun sequence	159296..159733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDKJ010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1406 SAMN35365255-rid18739113.guided.25, whole genome shotgun sequence	2557..2994	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKJ010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1406 SAMN35365255-rid18739113.denovo.29, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDKJ010000002.1	148776..149645	99.08	870	0						
GCA_032591815.1_PDT001810944.1_genomic.fna	Salmonella_enterica	0.5213	733.122 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1407 SAMN35365256-rid18739103.denovo.01, whole genome shotgun sequence	836815..837252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKL010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1407 SAMN35365256-rid18739103.guided.22, whole genome shotgun sequence	7641..8078	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKL010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1407 SAMN35365256-rid18739103.denovo.28, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDKL010000003.1	179904..180773	99.425	870	0						
GCA_032591835.1_PDT001810943.1_genomic.fna	Salmonella_enterica	0.5216	475.94 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1410 SAMN35365257-rid18738423.denovo.01, whole genome shotgun sequence	578993..579430	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKM010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1410 SAMN35365257-rid18738423.guided.20, whole genome shotgun sequence	6247..6684	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKM010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1410 SAMN35365257-rid18738423.denovo.27, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDKM010000002.1	179904..180773	99.425	870	0						
GCA_032591855.1_PDT001810942.1_genomic.fna	Salmonella_enterica	0.5219	440.751 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1411 SAMN35365258-rid18739093.denovo.01, whole genome shotgun sequence	836815..837252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKN010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1411 SAMN35365258-rid18739093.guided.18, whole genome shotgun sequence	13633..14070	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKN010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1411 SAMN35365258-rid18739093.denovo.26, whole genome shotgun sequence	1332..1462																																																						avrA	DAQDKN010000002.1	179904..180773	99.425	870	0						
GCA_032591875.1_PDT001810940.1_genomic.fna	Salmonella_enterica	0.5224	217.057 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1289-4 SAMN35365217-rid18739073.denovo.01, whole genome shotgun sequence	786890..787327	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKP010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1289-4 SAMN35365217-rid18739073.guided.36, whole genome shotgun sequence	1077..1514	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKP010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1289-4 SAMN35365217-rid18739073.denovo.39, whole genome shotgun sequence	1708..1838																																																																	
GCA_032591895.1_PDT001810941.1_genomic.fna	Salmonella_enterica	0.5227	547.413 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDKO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1466-1 SAMN35365288-rid18739083.denovo.01, whole genome shotgun sequence	402966..403403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDKO010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1466-1 SAMN35365288-rid18739083.guided.18, whole genome shotgun sequence	4766..5203	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKO010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1466-1 SAMN35365288-rid18739083.denovo.25, whole genome shotgun sequence	1708..1838																																																																	
GCA_032591915.1_PDT001810938.1_genomic.fna	Salmonella_enterica	0.5222	683.25 KB	3	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1468-1 SAMN35365290-rid18739053.denovo.01, whole genome shotgun sequence	825943..826380	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKR010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1468-1 SAMN35365290-rid18739053.guided.22, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKR010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1468-1 SAMN35365290-rid18739053.denovo.30, whole genome shotgun sequence	1708..1838																																																																	
GCA_032591935.1_PDT001810939.1_genomic.fna	Salmonella_enterica	0.5227	514.867 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDKQ010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1467 SAMN35365289-rid18739063.denovo.04, whole genome shotgun sequence	340917..341354	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDKQ010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1467 SAMN35365289-rid18739063.guided.27, whole genome shotgun sequence	839..1276	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKQ010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1467 SAMN35365289-rid18739063.denovo.26, whole genome shotgun sequence	1708..1838																																																																	
GCA_032591955.1_PDT001810937.1_genomic.fna	Salmonella_enterica	0.5216	507.807 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDKS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1469 SAMN35365291-rid18739043.denovo.01, whole genome shotgun sequence	159296..159733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDKS010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1469 SAMN35365291-rid18739043.guided.25, whole genome shotgun sequence	444..881	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKS010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1469 SAMN35365291-rid18739043.denovo.30, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDKS010000002.1	148776..149645	99.08	870	0						
GCA_032591975.1_PDT001810936.1_genomic.fna	Salmonella_enterica	0.5193	312.794 KB	5	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKU010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1470 SAMN35365292-rid18739033.denovo.02, whole genome shotgun sequence	180450..180887	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKU010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1470 SAMN35365292-rid18739033.guided.17, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDKU010000006.1	39428..40297	98.966	870	0						
GCA_032591995.1_PDT001810935.1_genomic.fna	Salmonella_enterica	0.522	128.852 KB	11	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKV010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1471 SAMN35365293-rid18739023.denovo.03, whole genome shotgun sequence	176326..176763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKV010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1471 SAMN35365293-rid18739023.guided.62, whole genome shotgun sequence	2061..2498	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDKV010000001.1	179904..180773	99.425	870	0						
GCA_032592015.1_PDT001810934.1_genomic.fna	Salmonella_enterica	0.5227	576.722 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDKT010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1473 SAMN35365294-rid18739013.denovo.04, whole genome shotgun sequence	402725..403162	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDKT010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1473 SAMN35365294-rid18739013.guided.27, whole genome shotgun sequence	266..703	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKT010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1473 SAMN35365294-rid18739013.denovo.26, whole genome shotgun sequence	1708..1838																																																																	
GCA_032592035.1_PDT001810933.1_genomic.fna	Salmonella_enterica	0.5224	434.005 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDKW010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1475 SAMN35365295-rid18738413.denovo.03, whole genome shotgun sequence	487131..487568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDKW010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1475 SAMN35365295-rid18738413.guided.20, whole genome shotgun sequence	839..1276	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKW010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1475 SAMN35365295-rid18738413.denovo.26, whole genome shotgun sequence	1708..1838																																																																	
GCA_032592055.1_PDT001810932.1_genomic.fna	Salmonella_enterica	0.5216	507.379 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDKX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1477 SAMN35365296-rid18739003.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDKX010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1477 SAMN35365296-rid18739003.guided.28, whole genome shotgun sequence	1628..2065	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKX010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1477 SAMN35365296-rid18739003.denovo.32, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDKX010000002.1	148776..149645	99.08	870	0						
GCA_032592075.1_PDT001810930.1_genomic.fna	Salmonella_enterica	0.5213	732.539 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDKY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1480 SAMN35365298-rid18738993.denovo.01, whole genome shotgun sequence	847523..847960	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDKY010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1480 SAMN35365298-rid18738993.guided.21, whole genome shotgun sequence	3350..3787	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKY010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1480 SAMN35365298-rid18738993.denovo.25, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDKY010000003.1	179904..180773	99.425	870	0						
GCA_032592095.1_PDT001810929.1_genomic.fna	Salmonella_enterica	0.5216	318.665 KB	5	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDKZ010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1290 SAMN35365218-rid18738983.denovo.08, whole genome shotgun sequence	24927..25364	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDKZ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1290 SAMN35365218-rid18738983.guided.24, whole genome shotgun sequence	215..652	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDKZ010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1290 SAMN35365218-rid18738983.denovo.30, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDKZ010000001.1	148776..149645	99.08	870	0						
GCA_032592115.1_PDT001810928.1_genomic.fna	Salmonella_enterica	0.5214	507.379 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDLA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1481 SAMN35365299-rid18738973.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDLA010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1481 SAMN35365299-rid18738973.guided.24, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLA010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1481 SAMN35365299-rid18738973.denovo.30, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDLA010000002.1	148776..149645	99.08	870	0						
GCA_032592135.1_PDT001810926.1_genomic.fna	Salmonella_enterica	0.5216	61.791 KB	23	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	-:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	-	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,s,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDLE010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1485 SAMN35365301-rid18738953.denovo.008, whole genome shotgun sequence	86661..87098	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDLE010000144.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1485 SAMN35365301-rid18738953.guided.112, whole genome shotgun sequence	1306..1743	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDLE010000004.1	119954..120823	98.966	870	0						
GCA_032592145.1_PDT001810924.1_genomic.fna	Salmonella_enterica	0.5216	507.39 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDLD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1304 SAMN35365230-rid18738933.denovo.01, whole genome shotgun sequence	159797..160234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDLD010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1304 SAMN35365230-rid18738933.guided.25, whole genome shotgun sequence	639..1076	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLD010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1304 SAMN35365230-rid18738933.denovo.32, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDLD010000002.1	148776..149645	99.08	870	0						
GCA_032592175.1_PDT001810927.1_genomic.fna	Salmonella_enterica	0.5223	546.444 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDLC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1483 SAMN35365300-rid18738963.denovo.01, whole genome shotgun sequence	375263..375700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDLC010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1483 SAMN35365300-rid18738963.guided.21, whole genome shotgun sequence	1058..1495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLC010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1483 SAMN35365300-rid18738963.denovo.28, whole genome shotgun sequence	1708..1838																																																																	
GCA_032592195.1_PDT001810923.1_genomic.fna	Salmonella_enterica	0.5216	507.436 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDLF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1305-1 SAMN35365231-rid18738403.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDLF010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1305-1 SAMN35365231-rid18738403.guided.24, whole genome shotgun sequence	360..797	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLF010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1305-1 SAMN35365231-rid18738403.denovo.31, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDLF010000002.1	148776..149645	99.08	870	0						
GCA_032592215.1_PDT001810925.1_genomic.fna	Salmonella_enterica	0.5224	391.491 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDLB010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1303 SAMN35365229-rid18738943.denovo.05, whole genome shotgun sequence	223213..223650	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDLB010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1303 SAMN35365229-rid18738943.guided.30, whole genome shotgun sequence	2746..3183	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLB010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1303 SAMN35365229-rid18738943.denovo.32, whole genome shotgun sequence	1163..1293																																																																	
GCA_032592235.1_PDT001810921.1_genomic.fna	Salmonella_enterica	0.5206	308.786 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDLH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Agona strain LJH1308 SAMN35365233-rid18738913.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDLH010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Agona strain LJH1308 SAMN35365233-rid18738913.guided.29, whole genome shotgun sequence	444..881	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	DAQDLH010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Agona strain LJH1308 SAMN35365233-rid18738913.denovo.04, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	DAQDLH010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Agona strain LJH1308 SAMN35365233-rid18738913.guided.32, whole genome shotgun sequence	4623..5045	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLH010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Agona strain LJH1308 SAMN35365233-rid18738913.denovo.37, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDLH010000002.1	173914..174783	99.195	870	0						
GCA_032592255.1_PDT001810920.1_genomic.fna	Salmonella_enterica	0.5214	355.249 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDLI010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1309 SAMN35365234-rid18738903.denovo.06, whole genome shotgun sequence	170176..170613	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDLI010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1309 SAMN35365234-rid18738903.guided.26, whole genome shotgun sequence	1627..2064	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLI010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1309 SAMN35365234-rid18738903.denovo.34, whole genome shotgun sequence	1725..1855																																																						avrA	DAQDLI010000005.1	179897..180766	99.425	870	0						
GCA_032592275.1_PDT001810919.1_genomic.fna	Salmonella_enterica	0.5206	319.554 KB	5	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDLK010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1310 SAMN35365235-rid18738893.denovo.03, whole genome shotgun sequence	137421..137858	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDLK010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1310 SAMN35365235-rid18738893.guided.23, whole genome shotgun sequence	6012..6449	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQDLK010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1310 SAMN35365235-rid18738893.guided.24, whole genome shotgun sequence	6012..6449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLK010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1310 SAMN35365235-rid18738893.denovo.31, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDLK010000004.1	39524..40393	98.966	870	0						
GCA_032592295.1_PDT001810922.1_genomic.fna	Salmonella_enterica	0.5206	452.899 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDLG010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1306 SAMN35365232-rid18738923.denovo.02, whole genome shotgun sequence	494119..494556	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDLG010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1306 SAMN35365232-rid18738923.guided.23, whole genome shotgun sequence	639..1076	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLG010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1306 SAMN35365232-rid18738923.denovo.28, whole genome shotgun sequence	438..568																																																						avrA	DAQDLG010000005.1	39524..40393	98.966	870	0						
GCA_032592315.1_PDT001810918.1_genomic.fna	Salmonella_enterica	0.5238	33.809 KB	45	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDLL010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1347-1 SAMN35365236-rid18738393.denovo.087, whole genome shotgun sequence	12454..12891	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDLL010000241.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1347-1 SAMN35365236-rid18738393.guided.139, whole genome shotgun sequence	7344..7781	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDLL010000022.1	43591..44438	99.41	848	0						
GCA_032592335.1_PDT001810917.1_genomic.fna	Salmonella_enterica	0.5218	655.059 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDLJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1348-1 SAMN35365237-rid18738883.denovo.01, whole genome shotgun sequence	836815..837252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDLJ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1348-1 SAMN35365237-rid18738883.guided.20, whole genome shotgun sequence	11590..12027	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLJ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1348-1 SAMN35365237-rid18738883.denovo.26, whole genome shotgun sequence	1347..1477																																																						avrA	DAQDLJ010000002.1	179725..180594	99.425	870	0						
GCA_032592355.1_PDT001810916.1_genomic.fna	Salmonella_enterica	0.5196	439.945 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQDLM010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1349-1 SAMN35365238-rid18738873.denovo.02, whole genome shotgun sequence	287885..288322	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQDLM010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1349-1 SAMN35365238-rid18738873.guided.13, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQDLM010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1349-1 SAMN35365238-rid18738873.denovo.17, whole genome shotgun sequence	36763..37405	enterobacteriales	IncFII(S)	100	262 / 262	DAQDLM010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1349-1 SAMN35365238-rid18738873.denovo.17, whole genome shotgun sequence	42855..43116		enterobacteriales	IncI2(Delta)	98.1	316 / 316	DAQDLM010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1349-1 SAMN35365238-rid18738873.denovo.16, whole genome shotgun sequence	54242..54557																																									avrA	DAQDLM010000001.1	553196..554065	99.54	870	0						
GCA_032592375.1_PDT001810915.1_genomic.fna	Salmonella_enterica	0.5212	263.352 KB	5	aroC_118,dnaN_107,hemD_8,hisD_51,purE_2,sucA_117,thrA_16	319	7:z29:-	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	2	Col(pHAD28),IncFIB(pHCM2)	aroC	100	100	aroC_118	dnaN	100	100	dnaN_107	hemD	100	100	hemD_8	hisD	100	100	hisD_51	purE	100	100	purE_2	sucA	100	100	sucA_117	thrA	100	100	thrA_16	7	z29	-	Salmonella enterica subspecies enterica (subspecies I)	Tennessee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQDLN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Tennessee strain LJH1280-1 SAMN35365212-rid18738863.denovo.01, whole genome shotgun sequence	720415..720852	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQDLN010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Tennessee strain LJH1280-1 SAMN35365212-rid18738863.guided.24, whole genome shotgun sequence	6526..6963	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLN010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Tennessee strain LJH1280-1 SAMN35365212-rid18738863.denovo.30, whole genome shotgun sequence	1708..1838	enterobacteriales	IncFIB(pHCM2)	97.62	884 / 875	DAQDLN010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Tennessee strain LJH1280-1 SAMN35365212-rid18738863.denovo.16, whole genome shotgun sequence	89242..90125																																																avrA	DAQDLN010000007.1	144026..144895	99.655	870	0						
GCA_032592395.1_PDT001810914.1_genomic.fna	Salmonella_enterica	0.5227	399.926 KB	5	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDLO010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1350-1 SAMN35365239-rid18738853.denovo.02, whole genome shotgun sequence	402966..403403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDLO010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1350-1 SAMN35365239-rid18738853.guided.20, whole genome shotgun sequence	6472..6909	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLO010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1350-1 SAMN35365239-rid18738853.denovo.29, whole genome shotgun sequence	1708..1838																																																																	
GCA_032592415.1_PDT001810913.1_genomic.fna	Salmonella_enterica	0.5209	478.489 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQDLP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1351-1 SAMN35365240-rid18738383.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQDLP010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1351-1 SAMN35365240-rid18738383.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQDLP010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1351-1 SAMN35365240-rid18738383.denovo.15, whole genome shotgun sequence	47962..48604	enterobacteriales	IncFII(S)	100	262 / 262	DAQDLP010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain LJH1351-1 SAMN35365240-rid18738383.denovo.15, whole genome shotgun sequence	3709..3970																																																avrA	DAQDLP010000002.1	553474..554343	99.54	870	0						
GCA_032592435.1_PDT001810912.1_genomic.fna	Salmonella_enterica	0.524	39.676 KB	33	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDLQ010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1352-1 SAMN35365241-rid18738843.denovo.099, whole genome shotgun sequence	1666..2103	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDLQ010000194.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1352-1 SAMN35365241-rid18738843.guided.159, whole genome shotgun sequence	832..1269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032592455.1_PDT001810911.1_genomic.fna	Salmonella_enterica	0.5214	732.57 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDLS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1358 SAMN35365242-rid18738833.denovo.01, whole genome shotgun sequence	836815..837252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDLS010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1358 SAMN35365242-rid18738833.guided.19, whole genome shotgun sequence	7672..8109	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLS010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1358 SAMN35365242-rid18738833.denovo.26, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDLS010000003.1	179894..180763	99.425	870	0						
GCA_032592475.1_PDT001810910.1_genomic.fna	Salmonella_enterica	0.5217	475.955 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDLR010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1359 SAMN35365243-rid18738823.denovo.07, whole genome shotgun sequence	176752..177189	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDLR010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1359 SAMN35365243-rid18738823.guided.19, whole genome shotgun sequence	2323..2760	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLR010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1359 SAMN35365243-rid18738823.denovo.23, whole genome shotgun sequence	438..568																																																						avrA	DAQDLR010000002.1	179904..180773	99.425	870	0						
GCA_032592495.1_PDT001810908.1_genomic.fna	Salmonella_enterica	0.5224	409.464 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDLU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1489 SAMN35365303-rid18738373.denovo.01, whole genome shotgun sequence	402607..403044	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.39	434/438	DAQDLU010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1489 SAMN35365303-rid18738373.guided.30, whole genome shotgun sequence	585..1018	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLU010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1489 SAMN35365303-rid18738373.denovo.28, whole genome shotgun sequence	1708..1838																																																																	
GCA_032592515.1_PDT001810909.1_genomic.fna	Salmonella_enterica	0.5217	733.122 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDLT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1486 SAMN35365302-rid18738813.denovo.01, whole genome shotgun sequence	836815..837252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDLT010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1486 SAMN35365302-rid18738813.guided.16, whole genome shotgun sequence	14988..15425	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLT010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1486 SAMN35365302-rid18738813.denovo.23, whole genome shotgun sequence	1326..1456																																																						avrA	DAQDLT010000003.1	179904..180773	99.425	870	0						
GCA_032592535.1_PDT001810907.1_genomic.fna	Salmonella_enterica	0.5217	450.121 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDLV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1490 SAMN35365304-rid18738803.denovo.01, whole genome shotgun sequence	159296..159733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDLV010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1490 SAMN35365304-rid18738803.guided.30, whole genome shotgun sequence	286..723	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLV010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1490 SAMN35365304-rid18738803.denovo.32, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDLV010000002.1	148776..149645	99.08	870	0						
GCA_032592555.1_PDT001810905.1_genomic.fna	Salmonella_enterica	0.5213	440.751 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDLX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1494 SAMN35365306-rid18738783.denovo.01, whole genome shotgun sequence	836962..837399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDLX010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1494 SAMN35365306-rid18738783.guided.23, whole genome shotgun sequence	1647..2084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDLX010000002.1	179904..180773	99.425	870	0						
GCA_032592575.1_PDT001810906.1_genomic.fna	Salmonella_enterica	0.5216	440.751 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDLW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1491 SAMN35365305-rid18738793.denovo.01, whole genome shotgun sequence	836814..837251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDLW010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1491 SAMN35365305-rid18738793.guided.20, whole genome shotgun sequence	18031..18468	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLW010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1491 SAMN35365305-rid18738793.denovo.28, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDLW010000002.1	179904..180773	99.425	870	0						
GCA_032592595.1_PDT001810904.1_genomic.fna	Salmonella_enterica	0.5225	579.428 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQDLY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1496 SAMN35365307-rid18738773.denovo.01, whole genome shotgun sequence	402966..403403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQDLY010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1496 SAMN35365307-rid18738773.guided.25, whole genome shotgun sequence	632..1069	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLY010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool strain LJH1496 SAMN35365307-rid18738773.denovo.23, whole genome shotgun sequence	1708..1838																																																																	
GCA_032592615.1_PDT001810903.1_genomic.fna	Salmonella_enterica	0.5216	450.121 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDMA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1497 SAMN35365308-rid18738363.denovo.01, whole genome shotgun sequence	159296..159733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDMA010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1497 SAMN35365308-rid18738363.guided.22, whole genome shotgun sequence	1152..1589	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDMA010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1497 SAMN35365308-rid18738363.denovo.27, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDMA010000002.1	148776..149645	99.08	870	0						
GCA_032592635.1_PDT001810902.1_genomic.fna	Salmonella_enterica	0.5217	440.751 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDLZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1442 SAMN35365273-rid18738763.denovo.01, whole genome shotgun sequence	836815..837252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDLZ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1442 SAMN35365273-rid18738763.guided.25, whole genome shotgun sequence	2394..2831	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDLZ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1442 SAMN35365273-rid18738763.denovo.26, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDLZ010000002.1	179904..180773	99.425	870	0						
GCA_032592655.1_PDT001810901.1_genomic.fna	Salmonella_enterica	0.5214	511.436 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDMB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1443 SAMN35365274-rid18738753.denovo.01, whole genome shotgun sequence	836815..837252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDMB010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1443 SAMN35365274-rid18738753.guided.18, whole genome shotgun sequence	698..1135	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDMB010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1443 SAMN35365274-rid18738753.denovo.23, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDMB010000002.1	179904..180773	99.425	870	0						
GCA_032592675.1_PDT001810900.1_genomic.fna	Salmonella_enterica	0.5217	440.751 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDMC010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1446 SAMN35365275-rid18738743.denovo.07, whole genome shotgun sequence	176527..176964	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDMC010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1446 SAMN35365275-rid18738743.guided.22, whole genome shotgun sequence	4088..4525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDMC010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1446 SAMN35365275-rid18738743.denovo.26, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDMC010000001.1	179904..180773	99.425	870	0						
GCA_032592695.1_PDT001810899.1_genomic.fna	Salmonella_enterica	0.5194	312.793 KB	5	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDMD010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1447 SAMN35365276-rid18738733.denovo.03, whole genome shotgun sequence	180447..180884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDMD010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg strain LJH1447 SAMN35365276-rid18738733.guided.16, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDMD010000006.1	39428..40297	98.966	870	0						
GCA_032592715.1_PDT001810898.1_genomic.fna	Salmonella_enterica	0.5215	440.751 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDME010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1448 SAMN35365277-rid18738353.denovo.05, whole genome shotgun sequence	176551..176988	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDME010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1448 SAMN35365277-rid18738353.guided.21, whole genome shotgun sequence	6246..6683	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDME010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1448 SAMN35365277-rid18738353.denovo.27, whole genome shotgun sequence	1326..1456																																																						avrA	DAQDME010000002.1	179904..180773	99.425	870	0						
GCA_032592735.1_PDT001810896.1_genomic.fna	Salmonella_enterica	0.5218	207.838 KB	9	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDMG010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1289-1 SAMN35365216-rid18738713.denovo.08, whole genome shotgun sequence	170156..170593	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDMG010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1289-1 SAMN35365216-rid18738713.guided.44, whole genome shotgun sequence	3239..3676	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDMG010000005.1	70050..70919	99.425	870	0						
GCA_032592755.1_PDT001810897.1_genomic.fna	Salmonella_enterica	0.5217	511.415 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDMF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1450 SAMN35365278-rid18738723.denovo.01, whole genome shotgun sequence	1010159..1010596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDMF010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1450 SAMN35365278-rid18738723.guided.15, whole genome shotgun sequence	24751..25188	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDMF010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1450 SAMN35365278-rid18738723.denovo.23, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDMF010000002.1	179842..180711	99.425	870	0						
GCA_032592775.1_PDT001810894.1_genomic.fna	Salmonella_enterica	0.5217	733.128 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDMI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1453 SAMN35365280-rid18738693.denovo.01, whole genome shotgun sequence	836815..837252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQDMI010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1453 SAMN35365280-rid18738693.guided.20, whole genome shotgun sequence	4814..5251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDMI010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1453 SAMN35365280-rid18738693.guided.21, whole genome shotgun sequence	4814..5251	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDMI010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1453 SAMN35365280-rid18738693.denovo.25, whole genome shotgun sequence	1326..1456																																																						avrA	DAQDMI010000003.1	179904..180773	99.425	870	0						
GCA_032592795.1_PDT001810895.1_genomic.fna	Salmonella_enterica	0.5216	440.751 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDMH010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1452 SAMN35365279-rid18738703.denovo.06, whole genome shotgun sequence	222485..222922	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDMH010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1452 SAMN35365279-rid18738703.guided.18, whole genome shotgun sequence	12282..12719	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDMH010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1452 SAMN35365279-rid18738703.denovo.25, whole genome shotgun sequence	438..568																																																						avrA	DAQDMH010000002.1	179904..180773	99.425	870	0						
GCA_032592815.1_PDT001810893.1_genomic.fna	Salmonella_enterica	0.5217	440.751 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDMJ010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1455 SAMN35365281-rid18738343.denovo.07, whole genome shotgun sequence	176326..176763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDMJ010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1455 SAMN35365281-rid18738343.guided.20, whole genome shotgun sequence	10489..10926	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDMJ010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1455 SAMN35365281-rid18738343.denovo.24, whole genome shotgun sequence	1737..1867																																																						avrA	DAQDMJ010000001.1	179904..180773	99.425	870	0						
GCA_032592835.1_PDT001810892.1_genomic.fna	Salmonella_enterica	0.5217	733.128 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDMK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1456 SAMN35365282-rid18738683.denovo.01, whole genome shotgun sequence	836815..837252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDMK010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1456 SAMN35365282-rid18738683.guided.23, whole genome shotgun sequence	2245..2682	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDMK010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1456 SAMN35365282-rid18738683.denovo.24, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDMK010000003.1	179904..180773	99.425	870	0						
GCA_032592855.1_PDT001810887.1_genomic.fna	Salmonella_enterica	0.5216	579.516 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDMP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1465-1 SAMN35365287-rid18738643.denovo.01, whole genome shotgun sequence	160085..160522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDMP010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1465-1 SAMN35365287-rid18738643.guided.21, whole genome shotgun sequence	1315..1752	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDMP010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1465-1 SAMN35365287-rid18738643.denovo.30, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDMP010000002.1	129772..130641	99.08	870	0						
GCA_032592875.1_PDT001810891.1_genomic.fna	Salmonella_enterica	0.5215	732.451 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDML010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1457 SAMN35365283-rid18738673.denovo.01, whole genome shotgun sequence	836815..837252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDML010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1457 SAMN35365283-rid18738673.guided.18, whole genome shotgun sequence	4814..5251	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDML010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1457 SAMN35365283-rid18738673.denovo.25, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDML010000003.1	179769..180638	99.425	870	0						
GCA_032592895.1_PDT001810889.1_genomic.fna	Salmonella_enterica	0.5215	283.034 KB	5	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDMN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1463-1 SAMN35365285-rid18738653.denovo.01, whole genome shotgun sequence	159296..159733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDMN010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1463-1 SAMN35365285-rid18738653.guided.27, whole genome shotgun sequence	3020..3457	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQDMN010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1463-1 SAMN35365285-rid18738653.guided.28, whole genome shotgun sequence	3020..3457	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDMN010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1463-1 SAMN35365285-rid18738653.denovo.34, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDMN010000002.1	148776..149645	99.08	870	0						
GCA_032592915.1_PDT001810888.1_genomic.fna	Salmonella_enterica	0.5217	440.751 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQDMO010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1464-1 SAMN35365286-rid18738333.denovo.07, whole genome shotgun sequence	176490..176927	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQDMO010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1464-1 SAMN35365286-rid18738333.guided.23, whole genome shotgun sequence	639..1076	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDMO010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo strain LJH1464-1 SAMN35365286-rid18738333.denovo.28, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDMO010000002.1	179904..180773	99.425	870	0						
GCA_032592935.1_PDT001810890.1_genomic.fna	Salmonella_enterica	0.5216	507.04 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQDMM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1462-1 SAMN35365284-rid18738663.denovo.01, whole genome shotgun sequence	159296..159733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQDMM010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1462-1 SAMN35365284-rid18738663.guided.21, whole genome shotgun sequence	1353..1790	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDMM010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Worthington strain LJH1462-1 SAMN35365284-rid18738663.denovo.27, whole genome shotgun sequence	1708..1838																																																						avrA	DAQDMM010000002.1	148776..149645	99.08	870	0						
GCA_032595715.1_PDT001814017.1_genomic.fna	Salmonella_enterica	0.5215	279.776 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNQFM010000001.1 Salmonella enterica strain PNUSAS361553 SAMN36383965-rid18765653.denovo.01, whole genome shotgun sequence	62180..62617	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQFM010000030.1 Salmonella enterica strain PNUSAS361553 SAMN36383965-rid18765653.denovo.35, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNQFM010000030.1 Salmonella enterica strain PNUSAS361553 SAMN36383965-rid18765653.denovo.35, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNQFM010000044.1 Salmonella enterica strain PNUSAS361553 SAMN36383965-rid18765653.guided.23, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNQFM010000048.1 Salmonella enterica strain PNUSAS361553 SAMN36383965-rid18765653.guided.34, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNQFM010000048.1 Salmonella enterica strain PNUSAS361553 SAMN36383965-rid18765653.guided.34, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNQFM010000037.1 Salmonella enterica strain PNUSAS361553 SAMN36383965-rid18765653.denovo.43, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNQFM010000049.1 Salmonella enterica strain PNUSAS361553 SAMN36383965-rid18765653.guided.42, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNQFM010000030.1 Salmonella enterica strain PNUSAS361553 SAMN36383965-rid18765653.denovo.35, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNQFM010000048.1 Salmonella enterica strain PNUSAS361553 SAMN36383965-rid18765653.guided.34, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNQFM010000027.1 Salmonella enterica strain PNUSAS361553 SAMN36383965-rid18765653.denovo.30, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNQFM010000047.1 Salmonella enterica strain PNUSAS361553 SAMN36383965-rid18765653.guided.31, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNQFM010000002.1	508771..509640	99.885	870	0						
GCA_032596075.1_PDT001817750.1_genomic.fna	Salmonella_enterica	0.5214	245.653 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNNZZ010000001.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNZZ010000013.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.denovo.13, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNZZ010000013.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.denovo.13, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNNZZ010000035.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.denovo.42, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNZZ010000035.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.denovo.42, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNNZZ010000050.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.guided.28, whole genome shotgun sequence	23032..23469	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNNZZ010000052.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.guided.33, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNNZZ010000052.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.guided.33, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNNZZ010000056.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.guided.45, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNNZZ010000056.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.guided.45, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNNZZ010000034.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.denovo.39, whole genome shotgun sequence	2742..3955	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNNZZ010000054.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.guided.40, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNNZZ010000013.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.denovo.13, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNNZZ010000052.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.guided.33, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNNZZ010000013.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.denovo.13, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNNZZ010000051.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.guided.31, whole genome shotgun sequence	1860..3059	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNNZZ010000032.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.denovo.36, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNNZZ010000055.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.guided.41, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNNZZ010000028.1 Salmonella enterica strain 23OH02_CH01-S1 SAMN36466274-rid18796713.denovo.30, whole genome shotgun sequence	10191..10750																																																						avrA	ABNNZZ010000003.1	39621..40490	99.655	870	0						
GCA_032596125.1_PDT001817749.1_genomic.fna	Salmonella_enterica	0.5198	200.375 KB	8	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	2	aac(6')-Iaa,grdA,aac(6')-Iaa,grdA	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col156	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOAA010000016.1 Salmonella enterica strain 23OH02_GT02-S1 SAMN36466275-rid18796703.denovo.16, whole genome shotgun sequence	48042..48479	Amikacin, Tobramycin	NC_003197	grdA	100	507/507	ABNOAA010000042.1 Salmonella enterica strain 23OH02_GT02-S1 SAMN36466275-rid18796703.denovo.46, whole genome shotgun sequence	56..562	Gentamicin, Sisomicin	QJX10702	aac(6')-Iaa	97.95	438/438	ABNOAA010000058.1 Salmonella enterica strain 23OH02_GT02-S1 SAMN36466275-rid18796703.guided.34, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	grdA	100	507/507	ABNOAA010000060.1 Salmonella enterica strain 23OH02_GT02-S1 SAMN36466275-rid18796703.guided.45, whole genome shotgun sequence	97..603	Gentamicin, Sisomicin	QJX10702																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNOAA010000041.1 Salmonella enterica strain 23OH02_GT02-S1 SAMN36466275-rid18796703.denovo.44, whole genome shotgun sequence	547..675	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNOAA010000043.1 Salmonella enterica strain 23OH02_GT02-S1 SAMN36466275-rid18796703.denovo.47, whole genome shotgun sequence	1571..1701		enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNOAA010000044.1 Salmonella enterica strain 23OH02_GT02-S1 SAMN36466275-rid18796703.denovo.48, whole genome shotgun sequence	1271..1401		enterobacteriales	Col156	96.1	154 / 154	ABNOAA010000039.1 Salmonella enterica strain 23OH02_GT02-S1 SAMN36466275-rid18796703.denovo.42, whole genome shotgun sequence	483..636																																		avrA	ABNOAA010000018.1	39687..40556	98.966	870	0						
GCA_032596275.1_PDT001817747.1_genomic.fna	Salmonella_enterica	0.5176	148.517 KB	10	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOAC010000020.1 Salmonella enterica strain 23OH03_CH01-S1 SAMN36466277-rid18796683.denovo.20, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOAC010000031.1 Salmonella enterica strain 23OH03_CH01-S1 SAMN36466277-rid18796683.denovo.32, whole genome shotgun sequence	2315..3151	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNOAC010000031.1 Salmonella enterica strain 23OH03_CH01-S1 SAMN36466277-rid18796683.denovo.32, whole genome shotgun sequence	1513..2315	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNOAC010000031.1 Salmonella enterica strain 23OH03_CH01-S1 SAMN36466277-rid18796683.denovo.32, whole genome shotgun sequence	1512..2315	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNOAC010000031.1 Salmonella enterica strain 23OH03_CH01-S1 SAMN36466277-rid18796683.denovo.32, whole genome shotgun sequence	1512..2315	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNOAC010000031.1 Salmonella enterica strain 23OH03_CH01-S1 SAMN36466277-rid18796683.denovo.32, whole genome shotgun sequence	1512..2315	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNOAC010000097.1 Salmonella enterica strain 23OH03_CH01-S1 SAMN36466277-rid18796683.guided.40, whole genome shotgun sequence	2356..3192	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNOAC010000097.1 Salmonella enterica strain 23OH03_CH01-S1 SAMN36466277-rid18796683.guided.40, whole genome shotgun sequence	1554..2356	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNOAC010000097.1 Salmonella enterica strain 23OH03_CH01-S1 SAMN36466277-rid18796683.guided.40, whole genome shotgun sequence	1553..2356	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNOAC010000097.1 Salmonella enterica strain 23OH03_CH01-S1 SAMN36466277-rid18796683.guided.40, whole genome shotgun sequence	1553..2356	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNOAC010000097.1 Salmonella enterica strain 23OH03_CH01-S1 SAMN36466277-rid18796683.guided.40, whole genome shotgun sequence	1553..2356	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNOAC010000099.1 Salmonella enterica strain 23OH03_CH01-S1 SAMN36466277-rid18796683.guided.75, whole genome shotgun sequence	893..1330	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNOAC010000032.1 Salmonella enterica strain 23OH03_CH01-S1 SAMN36466277-rid18796683.denovo.33, whole genome shotgun sequence	28959..29285	enterobacteriales	IncHI2A	99.52	630 / 630	ABNOAC010000032.1 Salmonella enterica strain 23OH03_CH01-S1 SAMN36466277-rid18796683.denovo.33, whole genome shotgun sequence	47269..47898		enterobacteriales	IncX1	100	373 / 373	ABNOAC010000050.1 Salmonella enterica strain 23OH03_CH01-S1 SAMN36466277-rid18796683.denovo.53, whole genome shotgun sequence	2218..2590																																									avrA	ABNOAC010000033.1	39489..40358	99.655	870	0						
GCA_032596315.1_PDT001817748.1_genomic.fna	Salmonella_enterica	0.5168	128.811 KB	11	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNOAB010000020.1 Salmonella enterica strain 23OH03_CG01-S1 SAMN36466276-rid18796693.denovo.020, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOAB010000041.1 Salmonella enterica strain 23OH03_CG01-S1 SAMN36466276-rid18796693.denovo.042, whole genome shotgun sequence	1231..2067	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNOAB010000041.1 Salmonella enterica strain 23OH03_CG01-S1 SAMN36466276-rid18796693.denovo.042, whole genome shotgun sequence	429..1231	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNOAB010000041.1 Salmonella enterica strain 23OH03_CG01-S1 SAMN36466276-rid18796693.denovo.042, whole genome shotgun sequence	428..1231	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNOAB010000041.1 Salmonella enterica strain 23OH03_CG01-S1 SAMN36466276-rid18796693.denovo.042, whole genome shotgun sequence	428..1231	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNOAB010000041.1 Salmonella enterica strain 23OH03_CG01-S1 SAMN36466276-rid18796693.denovo.042, whole genome shotgun sequence	428..1231	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNOAB010000114.1 Salmonella enterica strain 23OH03_CG01-S1 SAMN36466276-rid18796693.guided.047, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNOAB010000115.1 Salmonella enterica strain 23OH03_CG01-S1 SAMN36466276-rid18796693.guided.055, whole genome shotgun sequence	1272..2108	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNOAB010000115.1 Salmonella enterica strain 23OH03_CG01-S1 SAMN36466276-rid18796693.guided.055, whole genome shotgun sequence	470..1272	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNOAB010000115.1 Salmonella enterica strain 23OH03_CG01-S1 SAMN36466276-rid18796693.guided.055, whole genome shotgun sequence	469..1272	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNOAB010000115.1 Salmonella enterica strain 23OH03_CG01-S1 SAMN36466276-rid18796693.guided.055, whole genome shotgun sequence	469..1272	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNOAB010000115.1 Salmonella enterica strain 23OH03_CG01-S1 SAMN36466276-rid18796693.guided.055, whole genome shotgun sequence	469..1272	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNOAB010000037.1 Salmonella enterica strain 23OH03_CG01-S1 SAMN36466276-rid18796693.denovo.038, whole genome shotgun sequence	6901..7227	enterobacteriales	IncHI2A	99.52	630 / 630	ABNOAB010000037.1 Salmonella enterica strain 23OH03_CG01-S1 SAMN36466276-rid18796693.denovo.038, whole genome shotgun sequence	25211..25840		enterobacteriales	IncX1	100	373 / 373	ABNOAB010000062.1 Salmonella enterica strain 23OH03_CG01-S1 SAMN36466276-rid18796693.denovo.066, whole genome shotgun sequence	2218..2590																																									avrA	ABNOAB010000014.1	94074..94943	99.655	870	0						
GCA_032596345.1_PDT001817746.1_genomic.fna	Salmonella_enterica	0.5215	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	ColpVC,IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNOAD010000001.1 Salmonella enterica strain 23OH03_CL01-S1 SAMN36466278-rid18796673.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNOAD010000028.1 Salmonella enterica strain 23OH03_CL01-S1 SAMN36466278-rid18796673.denovo.31, whole genome shotgun sequence	1056..1847	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNOAD010000028.1 Salmonella enterica strain 23OH03_CL01-S1 SAMN36466278-rid18796673.denovo.31, whole genome shotgun sequence	1056..1847	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNOAD010000051.1 Salmonella enterica strain 23OH03_CL01-S1 SAMN36466278-rid18796673.guided.27, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNOAD010000052.1 Salmonella enterica strain 23OH03_CL01-S1 SAMN36466278-rid18796673.guided.30, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNOAD010000052.1 Salmonella enterica strain 23OH03_CL01-S1 SAMN36466278-rid18796673.guided.30, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNOAD010000038.1 Salmonella enterica strain 23OH03_CL01-S1 SAMN36466278-rid18796673.denovo.43, whole genome shotgun sequence	729..1604	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNOAD010000054.1 Salmonella enterica strain 23OH03_CL01-S1 SAMN36466278-rid18796673.guided.42, whole genome shotgun sequence	769..1644	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNOAD010000039.1 Salmonella enterica strain 23OH03_CL01-S1 SAMN36466278-rid18796673.denovo.44, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABNOAD010000055.1 Salmonella enterica strain 23OH03_CL01-S1 SAMN36466278-rid18796673.guided.46, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABNOAD010000028.1 Salmonella enterica strain 23OH03_CL01-S1 SAMN36466278-rid18796673.denovo.31, whole genome shotgun sequence	2352..3191	Sulfamethoxazole	U12338	sul1	100	840/840	ABNOAD010000052.1 Salmonella enterica strain 23OH03_CL01-S1 SAMN36466278-rid18796673.guided.30, whole genome shotgun sequence	2393..3232	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNOAD010000028.1 Salmonella enterica strain 23OH03_CL01-S1 SAMN36466278-rid18796673.denovo.31, whole genome shotgun sequence	15708..16907	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNOAD010000052.1 Salmonella enterica strain 23OH03_CL01-S1 SAMN36466278-rid18796673.guided.30, whole genome shotgun sequence	15749..16948	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	ColpVC	96.89	193 / 193	ABNOAD010000041.1 Salmonella enterica strain 23OH03_CL01-S1 SAMN36466278-rid18796673.denovo.47, whole genome shotgun sequence	1524..1716	enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNOAD010000027.1 Salmonella enterica strain 23OH03_CL01-S1 SAMN36466278-rid18796673.denovo.29, whole genome shotgun sequence	25435..25994																																																avrA	ABNOAD010000002.1	95321..96190	99.655	870	0						
GCA_032596395.1_PDT001817745.1_genomic.fna	Salmonella_enterica	0.5217	398.008 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_58,thrA_4	412	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC,ColpVC	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_58	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNOAE010000001.1 Salmonella enterica strain 23OH03_GT05-S1 SAMN36466279-rid18796663.denovo.01, whole genome shotgun sequence	579965..580402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNOAE010000030.1 Salmonella enterica strain 23OH03_GT05-S1 SAMN36466279-rid18796663.guided.20, whole genome shotgun sequence	9508..9945	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	96.89	193 / 193	ABNOAE010000021.1 Salmonella enterica strain 23OH03_GT05-S1 SAMN36466279-rid18796663.denovo.24, whole genome shotgun sequence	1524..1716	enterobacteriales	ColpVC	98.96	193 / 193	ABNOAE010000022.1 Salmonella enterica strain 23OH03_GT05-S1 SAMN36466279-rid18796663.denovo.25, whole genome shotgun sequence	805..997																																																avrA	ABNOAE010000002.1	151242..152111	99.54	870	0						
GCA_032598235.1_PDT001817585.1_genomic.fna	Salmonella_enterica	0.5203	336.98 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNQZS010000001.1 Salmonella enterica strain PNUSAS363196 SAMN36455103-rid18795063.denovo.01, whole genome shotgun sequence	636941..637378	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNQZS010000039.1 Salmonella enterica strain PNUSAS363196 SAMN36455103-rid18795063.guided.25, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQZS010000002.1	550819..551688	99.195	870	0						
GCA_032598255.1_PDT001817583.1_genomic.fna	Salmonella_enterica	0.5211	365.033 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNQZU010000001.1 Salmonella enterica strain PNUSAS363210 SAMN36455109-rid18795043.denovo.01, whole genome shotgun sequence	498155..498592	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNQZU010000032.1 Salmonella enterica strain PNUSAS363210 SAMN36455109-rid18795043.guided.18, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQZU010000015.1	39625..40494	99.425	870	0						
GCA_032598275.1_PDT001817584.1_genomic.fna	Salmonella_enterica	0.523	265.494 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQZT010000001.1 Salmonella enterica strain PNUSAS363193 SAMN36455106-rid18795053.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQZT010000037.1 Salmonella enterica strain PNUSAS363193 SAMN36455106-rid18795053.guided.29, whole genome shotgun sequence	7612..8049	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQZT010000002.1	39361..40230	99.655	870	0						
GCA_032598295.1_PDT001817582.1_genomic.fna	Salmonella_enterica	0.5208	188.465 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQZV010000005.1 Salmonella enterica strain PNUSAS363214 SAMN36455101-rid18795033.denovo.05, whole genome shotgun sequence	144507..144944	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQZV010000064.1 Salmonella enterica strain PNUSAS363214 SAMN36455101-rid18795033.guided.39, whole genome shotgun sequence	10120..10557	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNQZV010000027.1 Salmonella enterica strain PNUSAS363214 SAMN36455101-rid18795033.denovo.27, whole genome shotgun sequence	23124..23766																																																																	
GCA_032598315.1_PDT001817574.1_genomic.fna	Salmonella_enterica	0.5143	262.84 KB	8	aroC_33,dnaN_26,hemD_30,hisD_144,purE_464,sucA_87,thrA_134	1848	61:z52:z53	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_144	purE	100	100	purE_464	sucA	100	100	sucA_87	thrA	100	100	thrA_134	61	z52	z53	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:z52:z53		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNQZW010000001.1 Salmonella enterica strain PNUSAS363189 SAMN36455121-rid18795023.denovo.01, whole genome shotgun sequence	96770..97207	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNQZW010000054.1 Salmonella enterica strain PNUSAS363189 SAMN36455121-rid18795023.guided.31, whole genome shotgun sequence	11344..11781	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNQZW010000037.1 Salmonella enterica strain PNUSAS363189 SAMN36455121-rid18795023.denovo.41, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNQZW010000056.1 Salmonella enterica strain PNUSAS363189 SAMN36455121-rid18795023.guided.40, whole genome shotgun sequence	4227..4871	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNQZW010000037.1 Salmonella enterica strain PNUSAS363189 SAMN36455121-rid18795023.denovo.41, whole genome shotgun sequence	1519..1649	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNQZW010000056.1 Salmonella enterica strain PNUSAS363189 SAMN36455121-rid18795023.guided.40, whole genome shotgun sequence	3571..3701																																																avrA	ABNQZW010000009.1	38402..39271	96.437	870	0						
GCA_032598335.1_PDT001817573.1_genomic.fna	Salmonella_enterica	0.5212	246.746 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQZX010000004.1 Salmonella enterica strain PNUSAS363187 SAMN36455118-rid18795013.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQZX010000060.1 Salmonella enterica strain PNUSAS363187 SAMN36455118-rid18795013.guided.34, whole genome shotgun sequence	14744..15181	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNQZX010000014.1 Salmonella enterica strain PNUSAS363187 SAMN36455118-rid18795013.denovo.14, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNQZX010000014.1 Salmonella enterica strain PNUSAS363187 SAMN36455118-rid18795013.denovo.14, whole genome shotgun sequence	30407..30668																																																avrA	ABNQZX010000001.1	401416..402284	100	869	0						
GCA_032598355.1_PDT001817571.1_genomic.fna	Salmonella_enterica	0.5214	263.753 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNQZZ010000010.1 Salmonella enterica strain PNUSAS363211 SAMN36455114-rid18794473.denovo.10, whole genome shotgun sequence	70822..71259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNQZZ010000032.1 Salmonella enterica strain PNUSAS363211 SAMN36455114-rid18794473.guided.24, whole genome shotgun sequence	16407..16844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNQZZ010000001.1	137128..137997	98.966	870	0						
GCA_032598375.1_PDT001817572.1_genomic.fna	Salmonella_enterica	0.5213	225.553 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNQZY010000002.1 Salmonella enterica strain PNUSAS363198 SAMN36455117-rid18795003.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNQZY010000059.1 Salmonella enterica strain PNUSAS363198 SAMN36455117-rid18795003.guided.29, whole genome shotgun sequence	6494..6931	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNQZY010000039.1 Salmonella enterica strain PNUSAS363198 SAMN36455117-rid18795003.denovo.42, whole genome shotgun sequence	1251..1381	enterobacteriales	IncFIB(S)	100	643 / 643	ABNQZY010000015.1 Salmonella enterica strain PNUSAS363198 SAMN36455117-rid18795003.denovo.15, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	ABNQZY010000015.1 Salmonella enterica strain PNUSAS363198 SAMN36455117-rid18795003.denovo.15, whole genome shotgun sequence	30407..30668																																									avrA	ABNQZY010000003.1	401411..402279	100	869	0						
GCA_032598395.1_PDT001817570.1_genomic.fna	Salmonella_enterica	0.5198	489.522 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	4	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncX4	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRAA010000001.1 Salmonella enterica strain PNUSAS363190 SAMN36455120-rid18794993.denovo.01, whole genome shotgun sequence	293249..293686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRAA010000031.1 Salmonella enterica strain PNUSAS363190 SAMN36455120-rid18794993.guided.21, whole genome shotgun sequence	5790..6227	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRAA010000015.1 Salmonella enterica strain PNUSAS363190 SAMN36455120-rid18794993.denovo.15, whole genome shotgun sequence	48112..48754	enterobacteriales	IncFII(S)	100	262 / 262	ABNRAA010000015.1 Salmonella enterica strain PNUSAS363190 SAMN36455120-rid18794993.denovo.15, whole genome shotgun sequence	3859..4120		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNRAA010000013.1 Salmonella enterica strain PNUSAS363190 SAMN36455120-rid18794993.denovo.13, whole genome shotgun sequence	35837..35978		enterobacteriales	IncX4	98.88	712 / 712	ABNRAA010000016.1 Salmonella enterica strain PNUSAS363190 SAMN36455120-rid18794993.denovo.17, whole genome shotgun sequence	2444..3155																																		avrA	ABNRAA010000002.1	552771..553640	99.54	870	0						
GCA_032598415.1_PDT001817569.1_genomic.fna	Salmonella_enterica	0.521	197.789 KB	8	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col156,IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRAB010000001.1 Salmonella enterica strain PNUSAS363213 SAMN36455111-rid18794983.denovo.01, whole genome shotgun sequence	477380..477817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRAB010000050.1 Salmonella enterica strain PNUSAS363213 SAMN36455111-rid18794983.guided.33, whole genome shotgun sequence	3162..3599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	ABNRAB010000037.1 Salmonella enterica strain PNUSAS363213 SAMN36455111-rid18794983.denovo.40, whole genome shotgun sequence	3229..3380	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNRAB010000024.1 Salmonella enterica strain PNUSAS363213 SAMN36455111-rid18794983.denovo.24, whole genome shotgun sequence	34944..35477																																																avrA	ABNRAB010000023.1	39462..40332	99.196	871	0						
GCA_032598435.1_PDT001817568.1_genomic.fna	Salmonella_enterica	0.5203	325.993 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNRAC010000001.1 Salmonella enterica strain PNUSAS363191 SAMN36455108-rid18794973.denovo.01, whole genome shotgun sequence	477714..478151	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNRAC010000034.1 Salmonella enterica strain PNUSAS363191 SAMN36455108-rid18794973.guided.19, whole genome shotgun sequence	1307..1744	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNRAC010000014.1 Salmonella enterica strain PNUSAS363191 SAMN36455108-rid18794973.denovo.14, whole genome shotgun sequence	84059..84200																																																						avrA	ABNRAC010000006.1	144854..145723	99.31	870	0						
GCA_032598455.1_PDT001817566.1_genomic.fna	Salmonella_enterica	0.5198	469.792 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncX1,IncX4	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRAE010000001.1 Salmonella enterica strain PNUSAS363195 SAMN36455105-rid18794463.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRAE010000035.1 Salmonella enterica strain PNUSAS363195 SAMN36455105-rid18794463.guided.21, whole genome shotgun sequence	20639..21076	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRAE010000017.1 Salmonella enterica strain PNUSAS363195 SAMN36455105-rid18794463.denovo.17, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNRAE010000017.1 Salmonella enterica strain PNUSAS363195 SAMN36455105-rid18794463.denovo.17, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNRAE010000018.1 Salmonella enterica strain PNUSAS363195 SAMN36455105-rid18794463.denovo.18, whole genome shotgun sequence	12430..12803		enterobacteriales	IncX4	100	374 / 374	ABNRAE010000024.1 Salmonella enterica strain PNUSAS363195 SAMN36455105-rid18794463.denovo.25, whole genome shotgun sequence	7551..7924																																		avrA	ABNRAE010000013.1	39622..40491	99.54	870	0						
GCA_032598465.1_PDT001817567.1_genomic.fna	Salmonella_enterica	0.5198	283.98 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRAD010000003.1 Salmonella enterica strain PNUSAS363216 SAMN36455099-rid18794963.denovo.03, whole genome shotgun sequence	161971..162408	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRAD010000031.1 Salmonella enterica strain PNUSAS363216 SAMN36455099-rid18794963.guided.23, whole genome shotgun sequence	16131..16568	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRAD010000020.1 Salmonella enterica strain PNUSAS363216 SAMN36455099-rid18794963.denovo.20, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNRAD010000020.1 Salmonella enterica strain PNUSAS363216 SAMN36455099-rid18794963.denovo.20, whole genome shotgun sequence	5032..5293																																																avrA	ABNRAD010000001.1	584967..585836	99.54	870	0						
GCA_032598495.1_PDT001817565.1_genomic.fna	Salmonella_enterica	0.5204	305.992 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNRAF010000001.1 Salmonella enterica strain PNUSAS363207 SAMN36455115-rid18794953.denovo.01, whole genome shotgun sequence	136617..137054	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNRAF010000031.1 Salmonella enterica strain PNUSAS363207 SAMN36455115-rid18794953.guided.18, whole genome shotgun sequence	13242..13679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRAF010000002.1	496392..497260	99.425	870	0						
GCA_032598515.1_PDT001817564.1_genomic.fna	Salmonella_enterica	0.5212	433.606 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRAG010000001.1 Salmonella enterica strain PNUSAS363215 SAMN36455100-rid18794943.denovo.01, whole genome shotgun sequence	635563..636000	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRAG010000030.1 Salmonella enterica strain PNUSAS363215 SAMN36455100-rid18794943.guided.21, whole genome shotgun sequence	5513..5950	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRAG010000016.1	39348..40216	99.195	870	0						
GCA_032598535.1_PDT001817563.1_genomic.fna	Salmonella_enterica	0.5221	397.403 KB	6	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncN2	aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNRAH010000004.1 Salmonella enterica strain PNUSAS363208 SAMN36455112-rid18794933.denovo.04, whole genome shotgun sequence	260486..260923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNRAH010000029.1 Salmonella enterica strain PNUSAS363208 SAMN36455112-rid18794933.guided.14, whole genome shotgun sequence	37593..38030	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncN2	98.95	477 / 477	ABNRAH010000019.1 Salmonella enterica strain PNUSAS363208 SAMN36455112-rid18794933.denovo.21, whole genome shotgun sequence	35681..36157																																																						avrA	ABNRAH010000001.1	508834..509703	99.31	870	0						
GCA_032598675.1_PDT001920146.1_genomic.fna	Salmonella_enterica	0.5187	166.041 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	14	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aph(3')-Ia,blaLAP-2,blaTEM-1B,blaLAP-2,blaTEM-1B,lnu(F),lnu(F),floR,floR,sul3,sul2,sul2,sul3,tet(B),tet(A),tet(A),tet(B)	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNRAQ010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.01, whole genome shotgun sequence	145478..145915	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNRAQ010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.51, whole genome shotgun sequence	555..1370	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(6)-Id	100	837/837	ABNRAQ010000052.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.55, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNRAQ010000052.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.55, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNRAQ010000057.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.63, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNRAQ010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.70, whole genome shotgun sequence	945..1736	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNRAQ010000076.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.guided.34, whole genome shotgun sequence	14357..14794	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNRAQ010000078.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.guided.54, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNRAQ010000078.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.guided.54, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNRAQ010000082.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.guided.64, whole genome shotgun sequence	151..1011	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNRAQ010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.guided.68, whole genome shotgun sequence	986..1777	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	100	816/816	ABNRAQ010000086.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.guided.69, whole genome shotgun sequence	762..1577	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	blaLAP-2	100	858/858	ABNRAQ010000054.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.58, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNRAQ010000061.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.73, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNRAQ010000079.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.guided.57, whole genome shotgun sequence	2096..2953	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNRAQ010000088.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.guided.74, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	lnu(F)	100	822/822	ABNRAQ010000059.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.70, whole genome shotgun sequence	1868..2689	Lincomycin	EU118119	lnu(F)	100	822/822	ABNRAQ010000085.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.guided.68, whole genome shotgun sequence	1909..2730	Lincomycin	EU118119	floR	98.11	1214/1215	ABNRAQ010000045.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.47, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNRAQ010000081.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.guided.62, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	sul3	100	792/792	ABNRAQ010000039.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.41, whole genome shotgun sequence	12282..13073	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNRAQ010000052.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.55, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNRAQ010000078.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.guided.54, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNRAQ010000084.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.guided.67, whole genome shotgun sequence	2060..2851	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNRAQ010000040.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.42, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNRAQ010000056.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.61, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNRAQ010000080.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.guided.59, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNRAQ010000087.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.guided.72, whole genome shotgun sequence	860..2065	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNRAQ010000046.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.48, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNRAQ010000017.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.17, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNRAQ010000017.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.17, whole genome shotgun sequence	92076..92705		enterobacteriales	IncN	100	512 / 514	ABNRAQ010000065.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017527 SAMN37690995-rid19634083.denovo.78, whole genome shotgun sequence	470..981																																		avrA	ABNRAQ010000002.1	434726..435595	99.885	870	0						
GCA_032598685.1_PDT001920131.1_genomic.fna	Salmonella_enterica	0.5189	256.347 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	19	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aph(3')-Ia,aadA22,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaLAP-2,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul2,sul2,sul3,tet(B),tet(A),tet(A),tet(B),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNRAP010000001.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.001, whole genome shotgun sequence	145478..145915	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNRAP010000046.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.049, whole genome shotgun sequence	555..1370	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABNRAP010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.053, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNRAP010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.053, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNRAP010000054.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.062, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNRAP010000062.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.076, whole genome shotgun sequence	766..1557	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	100	438/438	ABNRAP010000093.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.028, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNRAP010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.052, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNRAP010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.052, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNRAP010000101.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.063, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABNRAP010000106.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.073, whole genome shotgun sequence	762..1577	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aadA22	100	792/792	ABNRAP010000107.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.081, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaCTX-M-55	100	876/876	ABNRAP010000041.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.044, whole genome shotgun sequence	2300..3175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNRAP010000058.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.070, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNRAP010000068.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.085, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNRAP010000098.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.056, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNRAP010000104.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.069, whole genome shotgun sequence	2096..2953	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNRAP010000109.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.084, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNRAP010000055.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.064, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNRAP010000062.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.076, whole genome shotgun sequence	1689..2510	Lincomycin	EU118119	mph(A)	100	906/906	ABNRAP010000102.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.066, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNRAP010000107.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.081, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABNRAP010000040.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.043, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNRAP010000100.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.061, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNRAP010000050.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.055, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNRAP010000097.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.054, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNRAP010000066.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.080, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNRAP010000108.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.082, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNRAP010000037.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.039, whole genome shotgun sequence	12282..13073	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNRAP010000049.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.053, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNRAP010000096.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.052, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNRAP010000105.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.071, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNRAP010000036.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.037, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABNRAP010000053.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.060, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNRAP010000099.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.058, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABNRAP010000103.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.067, whole genome shotgun sequence	1663..2868	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNRAP010000066.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.080, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNRAP010000108.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.guided.082, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNRAP010000042.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.045, whole genome shotgun sequence	1326..1445	enterobacteriales	IncHI2	100	327 / 327	ABNRAP010000015.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.015, whole genome shotgun sequence	73766..74092		enterobacteriales	IncHI2A	99.52	630 / 630	ABNRAP010000015.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.015, whole genome shotgun sequence	92076..92705		enterobacteriales	IncN	100	513 / 514	ABNRAP010000076.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS017526 SAMN37690992-rid19633933.denovo.093, whole genome shotgun sequence	470..982																																		avrA	ABNRAP010000002.1	434734..435603	99.885	870	0						
GCA_032598805.1_ASM3259880v1_genomic.fna	Salmonella_enterica	0.5228	4.624 MB	1	aroC_5,dnaN_2,hemD_42,hisD_7,purE_31,sucA_6,thrA_11	78	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_42	hisD	100	100	hisD_7	purE	100	100	purE_31	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	CP116616.1 Salmonella enterica subsp. enterica serovar Gallinarum strain SG1 chromosome, complete genome	121747..122184	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	CP116616.1	3463308..3464177	99.54	870	0						
GCA_032599545.1_PDT001925847.1_genomic.fna	Salmonella_enterica	0.519	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDNO010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDNO010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDNO010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDNO010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDNO010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDNO010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDNO010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.denovo.35, whole genome shotgun sequence	33201..34076	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDNO010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.guided.59, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDNO010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.denovo.35, whole genome shotgun sequence	38717..39373	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDNO010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDNO010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDNO010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDNO010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.denovo.35, whole genome shotgun sequence	29191..30390	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDNO010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDNO010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDNO010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.guided.64, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDNO010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.denovo.51, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDNO010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDNO010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 598 isolate 598 SAMEA114440187-rid19692183.denovo.41, whole genome shotgun sequence	11245..11618																																																				
GCA_032599565.1_PDT001925848.1_genomic.fna	Salmonella_enterica	0.5192	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDNM010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDNM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDNM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDNM010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDNM010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.guided.54, whole genome shotgun sequence	5231..6067	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDNM010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.guided.54, whole genome shotgun sequence	4428..5231	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDNM010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.denovo.32, whole genome shotgun sequence	33221..34096	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDNM010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDNM010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.denovo.32, whole genome shotgun sequence	38737..39393	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDNM010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDNM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDNM010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.guided.54, whole genome shotgun sequence	3552..4367	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDNM010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.denovo.32, whole genome shotgun sequence	29211..30410	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDNM010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDNM010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDNM010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDNM010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.denovo.49, whole genome shotgun sequence	3489..4048	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDNM010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDNM010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 709 isolate 709 SAMEA114440192-rid19692193.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032599585.1_PDT001925846.1_genomic.fna	Salmonella_enterica	0.5192	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDNL010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDNL010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDNL010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDNL010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDNL010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDNL010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDNL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.denovo.33, whole genome shotgun sequence	33209..34084	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDNL010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDNL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.denovo.33, whole genome shotgun sequence	38725..39381	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDNL010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDNL010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDNL010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDNL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.denovo.33, whole genome shotgun sequence	29199..30398	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDNL010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDNL010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDNL010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDNL010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDNL010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDNL010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 292 isolate 292 SAMEA114440178-rid19692173.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032599605.1_PDT001925845.1_genomic.fna	Salmonella_enterica	0.5192	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDNN010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDNN010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDNN010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDNN010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.guided.40, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDNN010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDNN010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDNN010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.denovo.33, whole genome shotgun sequence	33235..34110	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDNN010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.guided.59, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDNN010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.denovo.33, whole genome shotgun sequence	38751..39407	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDNN010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDNN010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDNN010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDNN010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.denovo.33, whole genome shotgun sequence	29225..30424	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDNN010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDNN010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDNN010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.guided.64, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDNN010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.denovo.51, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDNN010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDNN010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 255 isolate 255 SAMEA114440176-rid19692123.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032599625.1_PDT001925844.1_genomic.fna	Salmonella_enterica	0.5189	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDNP010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDNP010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDNP010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDNP010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.guided.41, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDNP010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDNP010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDNP010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.denovo.33, whole genome shotgun sequence	33207..34082	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDNP010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDNP010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.denovo.33, whole genome shotgun sequence	38723..39379	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDNP010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDNP010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDNP010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDNP010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.denovo.33, whole genome shotgun sequence	29197..30396	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDNP010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDNP010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDNP010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDNP010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDNP010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDNP010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104344 isolate A104344 SAMEA114327926-rid19692163.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032604955.1_PDT001925608.1_genomic.fna	Salmonella_enterica	0.5227	304.605 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNRIX010000001.1 Salmonella enterica strain PNUSAS390071 SAMN37796570-rid19689363.denovo.01, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNRIX010000035.1 Salmonella enterica strain PNUSAS390071 SAMN37796570-rid19689363.guided.29, whole genome shotgun sequence	278..715	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRIX010000002.1	39611..40480	98.966	870	0						
GCA_032604995.1_PDT001925605.1_genomic.fna	Salmonella_enterica	0.5206	336.194 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRIY010000001.1 Salmonella enterica strain PNUSAS389720 SAMN37796572-rid19689343.denovo.01, whole genome shotgun sequence	477153..477590	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRIY010000034.1 Salmonella enterica strain PNUSAS389720 SAMN37796572-rid19689343.guided.19, whole genome shotgun sequence	21762..22199	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRIY010000008.1	152064..152934	99.196	871	0						
GCA_032605015.1_PDT001925606.1_genomic.fna	Salmonella_enterica	0.5225	398.204 KB	5	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNRIW010000006.1 Salmonella enterica strain PNUSAS390066 SAMN37796567-rid19689353.denovo.06, whole genome shotgun sequence	144913..145350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNRIW010000052.1 Salmonella enterica strain PNUSAS390066 SAMN37796567-rid19689353.guided.27, whole genome shotgun sequence	9210..9647	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNRIW010000001.1	509880..510749	99.31	870	0						
GCA_032605035.1_PDT001925603.1_genomic.fna	Salmonella_enterica	0.5218	372.665 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRIZ010000001.1 Salmonella enterica strain PNUSAS390068 SAMN37796565-rid19689333.denovo.01, whole genome shotgun sequence	413121..413558	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRIZ010000042.1 Salmonella enterica strain PNUSAS390068 SAMN37796565-rid19689333.guided.22, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRIZ010000018.1	39457..40325	99.195	870	0						
GCA_032605055.1_PDT001925604.1_genomic.fna	Salmonella_enterica	0.5204	223.58 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	Col8282,IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNRJA010000001.1 Salmonella enterica strain PNUSAS389719 SAMN37796573-rid19690333.denovo.01, whole genome shotgun sequence	145258..145695	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNRJA010000047.1 Salmonella enterica strain PNUSAS389719 SAMN37796573-rid19690333.denovo.52, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNRJA010000047.1 Salmonella enterica strain PNUSAS389719 SAMN37796573-rid19690333.denovo.52, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNRJA010000069.1 Salmonella enterica strain PNUSAS389719 SAMN37796573-rid19690333.guided.28, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNRJA010000073.1 Salmonella enterica strain PNUSAS389719 SAMN37796573-rid19690333.guided.51, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNRJA010000073.1 Salmonella enterica strain PNUSAS389719 SAMN37796573-rid19690333.guided.51, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNRJA010000054.1 Salmonella enterica strain PNUSAS389719 SAMN37796573-rid19690333.denovo.60, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNRJA010000074.1 Salmonella enterica strain PNUSAS389719 SAMN37796573-rid19690333.guided.58, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNRJA010000047.1 Salmonella enterica strain PNUSAS389719 SAMN37796573-rid19690333.denovo.52, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNRJA010000073.1 Salmonella enterica strain PNUSAS389719 SAMN37796573-rid19690333.guided.51, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNRJA010000035.1 Salmonella enterica strain PNUSAS389719 SAMN37796573-rid19690333.denovo.37, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNRJA010000071.1 Salmonella enterica strain PNUSAS389719 SAMN37796573-rid19690333.guided.38, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col8282	90.1	202 / 207	ABNRJA010000048.1 Salmonella enterica strain PNUSAS389719 SAMN37796573-rid19690333.denovo.53, whole genome shotgun sequence	191..392	enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNRJA010000025.1 Salmonella enterica strain PNUSAS389719 SAMN37796573-rid19690333.denovo.25, whole genome shotgun sequence	15755..16288																																																avrA	ABNRJA010000014.1	39592..40461	99.885	870	0						
GCA_032605075.1_PDT001925599.1_genomic.fna	Salmonella_enterica	0.5212	367.11 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRJI010000001.1 Salmonella enterica strain PNUSAS389718 SAMN37796574-rid19689303.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRJI010000045.1 Salmonella enterica strain PNUSAS389718 SAMN37796574-rid19689303.guided.25, whole genome shotgun sequence	10354..10791	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRJI010000012.1	93593..94463	99.196	871	0						
GCA_032605095.1_PDT001925601.1_genomic.fna	Salmonella_enterica	0.5226	299.348 KB	7	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNRJC010000003.1 Salmonella enterica strain PNUSAS390070 SAMN37796569-rid19689323.denovo.03, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNRJC010000044.1 Salmonella enterica strain PNUSAS390070 SAMN37796569-rid19689323.guided.28, whole genome shotgun sequence	5697..6134	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRJC010000001.1	39350..40219	98.966	870	0						
GCA_032605115.1_PDT001925602.1_genomic.fna	Salmonella_enterica	0.5206	192.315 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNRJB010000012.1 Salmonella enterica strain PNUSAS389721 SAMN37796571-rid19690323.denovo.12, whole genome shotgun sequence	43439..43876	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNRJB010000051.1 Salmonella enterica strain PNUSAS389721 SAMN37796571-rid19690323.guided.35, whole genome shotgun sequence	10040..10477	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNRJB010000025.1 Salmonella enterica strain PNUSAS389721 SAMN37796571-rid19690323.denovo.25, whole genome shotgun sequence	36326..36968																																																																	
GCA_032605135.1_PDT001925598.1_genomic.fna	Salmonella_enterica	0.52	436.383 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRJG010000001.1 Salmonella enterica strain PNUSAS390069 SAMN37796564-rid19689293.denovo.01, whole genome shotgun sequence	477380..477817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRJG010000031.1 Salmonella enterica strain PNUSAS390069 SAMN37796564-rid19689293.guided.21, whole genome shotgun sequence	32665..33102	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNRJG010000018.1 Salmonella enterica strain PNUSAS390069 SAMN37796564-rid19689293.denovo.18, whole genome shotgun sequence	34944..35477	enterobacteriales	IncX1	98.66	374 / 374	ABNRJG010000021.1 Salmonella enterica strain PNUSAS390069 SAMN37796564-rid19689293.denovo.22, whole genome shotgun sequence	6956..7329																																																avrA	ABNRJG010000017.1	39474..40344	99.196	871	0						
GCA_032605155.1_PDT001925600.1_genomic.fna	Salmonella_enterica	0.5194	296.018 KB	6	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_4	371	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNRJD010000003.1 Salmonella enterica strain PNUSAS390067 SAMN37796566-rid19689313.denovo.03, whole genome shotgun sequence	314192..314629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNRJD010000058.1 Salmonella enterica strain PNUSAS390067 SAMN37796566-rid19689313.guided.28, whole genome shotgun sequence	18798..19235	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNRJD010000019.1 Salmonella enterica strain PNUSAS390067 SAMN37796566-rid19689313.denovo.19, whole genome shotgun sequence	5328..5970																																																						avrA	ABNRJD010000004.1	39340..40209	99.54	870	0						
GCA_032605175.1_PDT001925597.1_genomic.fna	Salmonella_enterica	0.522	200.175 KB	8	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNRJH010000012.1 Salmonella enterica strain PNUSAS390065 SAMN37796568-rid19690313.denovo.12, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNRJH010000039.1 Salmonella enterica strain PNUSAS390065 SAMN37796568-rid19690313.guided.29, whole genome shotgun sequence	9333..9770	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNRJH010000006.1	101688..102557	99.77	870	0						
GCA_032605315.1_PDT001925590.1_genomic.fna	Salmonella_enterica	0.5237	45.273 KB	31	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	-:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	-	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:l,v:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNRJP010000057.1 Salmonella enterica subsp. enterica serovar London strain FSIS22314528 SAMN37796825-rid19689243.denovo.057, whole genome shotgun sequence	14068..14505	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNRJP010000190.1 Salmonella enterica subsp. enterica serovar London strain FSIS22314528 SAMN37796825-rid19689243.guided.107, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNRJP010000144.1 Salmonella enterica subsp. enterica serovar London strain FSIS22314528 SAMN37796825-rid19689243.denovo.147, whole genome shotgun sequence	557..687	enterobacteriales	ColRNAI	90.83	109 / 130	ABNRJP010000125.1 Salmonella enterica subsp. enterica serovar London strain FSIS22314528 SAMN37796825-rid19689243.denovo.128, whole genome shotgun sequence	1016..1124																																																avrA	ABNRJP010000029.1	43545..44414	99.425	870	0						
GCA_032605335.1_PDT001925588.1_genomic.fna	Salmonella_enterica	0.5229	60.872 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNRJQ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.denovo.001, whole genome shotgun sequence	232596..233033	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNRJQ010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.denovo.072, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNRJQ010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.denovo.072, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNRJQ010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.denovo.106, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNRJQ010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.denovo.106, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNRJQ010000150.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.guided.068, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNRJQ010000151.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.guided.073, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNRJQ010000151.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.guided.073, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNRJQ010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.guided.105, whole genome shotgun sequence	8308..9333	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNRJQ010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.guided.105, whole genome shotgun sequence	9562..10338	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNRJQ010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.denovo.114, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNRJQ010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.guided.137, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNRJQ010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.denovo.106, whole genome shotgun sequence	8678..9891	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNRJQ010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.guided.105, whole genome shotgun sequence	496..1709	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNRJQ010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.denovo.072, whole genome shotgun sequence	17100..17939	Sulfamethoxazole	U12338	sul1	100	840/840	ABNRJQ010000151.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.guided.073, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNRJQ010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.denovo.072, whole genome shotgun sequence	3384..4583	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNRJQ010000151.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.guided.073, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNRJQ010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314526 SAMN37796823-rid19689223.denovo.084, whole genome shotgun sequence	14634..15193																																																						avrA	ABNRJQ010000038.1	39526..40395	99.655	870	0						
GCA_032605375.1_PDT001925586.1_genomic.fna	Salmonella_enterica	0.5225	45.673 KB	34	aroC_92*,dnaN_125,hemD_78,hisD_128,purE_138,sucA_9,thrA_141	463*	-:e,h:l,w	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	99.8003992015968	100	aroC_92*	dnaN	100	100	dnaN_125	hemD	100	100	hemD_78	hisD	100	100	hisD_128	purE	100	100	purE_138	sucA	100	100	sucA_9	thrA	100	100	thrA_141	-	e,h	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNRJT010000061.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS22314527 SAMN37796824-rid19689213.denovo.061, whole genome shotgun sequence	14378..14815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNRJT010000199.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS22314527 SAMN37796824-rid19689213.guided.118, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNRJT010000036.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS22314527 SAMN37796824-rid19689213.denovo.036, whole genome shotgun sequence	40989..41411	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNRJT010000197.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS22314527 SAMN37796824-rid19689213.guided.071, whole genome shotgun sequence	21555..21977	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRJT010000014.1	25031..25900	98.851	870	0						
GCA_032605515.1_PDT001925581.1_genomic.fna	Salmonella_enterica	0.5227	43.225 KB	34	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNRJY010000059.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314525 SAMN37796822-rid19689183.denovo.059, whole genome shotgun sequence	15496..15933	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNRJY010000185.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314525 SAMN37796822-rid19689183.guided.089, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNRJY010000153.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314525 SAMN37796822-rid19689183.denovo.156, whole genome shotgun sequence	1708..1838																																																						avrA	ABNRJY010000061.1	24896..25765	98.966	870	0						
GCA_032605675.1_PDT001925572.1_genomic.fna	Salmonella_enterica	0.5194	114.978 KB	14	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,aadA1,aph(6)-Id,aph(3'')-Ib,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(B),tet(B)	1	parC_p.T57S	5	Col(pHAD28),IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNRKE010000010.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.denovo.010, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNRKE010000066.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.denovo.066, whole genome shotgun sequence	3632..4468	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNRKE010000066.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.denovo.066, whole genome shotgun sequence	4468..5271	Streptomycin	AF321551	aadA1	99.75	792/792	ABNRKE010000067.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.denovo.067, whole genome shotgun sequence	554..1345	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNRKE010000067.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.denovo.067, whole genome shotgun sequence	554..1345	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNRKE010000110.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.guided.073, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNRKE010000110.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.guided.073, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aadA1	99.75	792/792	ABNRKE010000111.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.guided.075, whole genome shotgun sequence	5111..5902	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNRKE010000111.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.guided.075, whole genome shotgun sequence	5111..5902	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.95	438/438	ABNRKE010000114.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.guided.091, whole genome shotgun sequence	1377..1814	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNRKE010000068.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.denovo.068, whole genome shotgun sequence	791..1630	Sulfamethoxazole	U12338	sul1	100	840/840	ABNRKE010000112.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.guided.076, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABNRKE010000069.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.denovo.069, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNRKE010000113.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.guided.082, whole genome shotgun sequence	1638..2843	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.15	113 / 131	ABNRKE010000079.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.denovo.083, whole genome shotgun sequence	1410..1522	enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNRKE010000051.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.denovo.051, whole genome shotgun sequence	1834..2515		enterobacteriales	IncFII	96.95	262 / 261	ABNRKE010000066.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.denovo.066, whole genome shotgun sequence	2748..3009		enterobacteriales	IncFII	96.95	262 / 261	ABNRKE010000110.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.guided.073, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNRKE010000055.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.denovo.055, whole genome shotgun sequence	3027..3168		enterobacteriales	IncX1	100	373 / 373	ABNRKE010000065.1 Salmonella enterica strain PF10V3-F10_SAL SAMN37795653-rid19690233.denovo.065, whole genome shotgun sequence	2153..2525																				avrA	ABNRKE010000015.1	102634..103503	99.655	870	0						
GCA_032607895.1_PDT001925343.1_genomic.fna	Salmonella_enterica	0.5216	130.763 KB	13	aroC_20,dnaN_4,hemD_23,hisD_14,purE_16,sucA_19,thrA_140	423	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_20	dnaN	100	100	dnaN_4	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_19	thrA	100	100	thrA_140	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNROK010000027.1 Salmonella enterica strain PS02371A SAMN37793089-rid19687963.denovo.27, whole genome shotgun sequence	52309..52746	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNROK010000075.1 Salmonella enterica strain PS02371A SAMN37793089-rid19687963.guided.62, whole genome shotgun sequence	383..820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032607915.1_PDT001925342.1_genomic.fna	Salmonella_enterica	0.5232	396.59 KB	5	aroC_15,dnaN_126,hemD_101,hisD_88,purE_8,sucA_19,thrA_18	446	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_126	hemD	100	100	hemD_101	hisD	100	100	hisD_88	purE	100	100	purE_8	sucA	100	100	sucA_19	thrA	100	100	thrA_18	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNROJ010000001.1 Salmonella enterica strain PS02393A SAMN37793090-rid19687953.denovo.01, whole genome shotgun sequence	430952..431389	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNROJ010000036.1 Salmonella enterica strain PS02393A SAMN37793090-rid19687953.guided.31, whole genome shotgun sequence	523..960	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNROJ010000007.1	171824..172692	99.655	870	0						
GCA_032607935.1_PDT001925341.1_genomic.fna	Salmonella_enterica	0.5238	82.449 KB	19	aroC_15,dnaN_126,hemD_101,hisD_88,purE_8,sucA_19,thrA_18	446	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_126	hemD	100	100	hemD_101	hisD	100	100	hisD_88	purE	100	100	purE_8	sucA	100	100	sucA_19	thrA	100	100	thrA_18	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNROL010000056.1 Salmonella enterica strain PS02394A SAMN37793091-rid19687943.denovo.058, whole genome shotgun sequence	11308..11745	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNROL010000133.1 Salmonella enterica strain PS02394A SAMN37793091-rid19687943.guided.081, whole genome shotgun sequence	9145..9582	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNROL010000004.1	171824..172101	98.925	279	1.96e-142	avrA	ABNROL010000096.1	1..579	100	579	0
GCA_032607955.1_PDT001925339.1_genomic.fna	Salmonella_enterica	0.5219	93.352 KB	14	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	1	ColRNAI	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRON010000023.1 Salmonella enterica strain PS02474A SAMN37793084-rid19688413.denovo.23, whole genome shotgun sequence	52372..52809	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRON010000085.1 Salmonella enterica strain PS02474A SAMN37793084-rid19688413.guided.71, whole genome shotgun sequence	495..932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.96	427/438	ABNRON010000088.1 Salmonella enterica strain PS02474A SAMN37793084-rid19688413.guided.75, whole genome shotgun sequence	1..427	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	ColRNAI	90.08	131 / 130	ABNRON010000063.1 Salmonella enterica strain PS02474A SAMN37793084-rid19688413.denovo.63, whole genome shotgun sequence	3981..4111																																																						avrA	ABNRON010000011.1	102636..103505	99.31	870	0						
GCA_032607975.1_PDT001925340.1_genomic.fna	Salmonella_enterica	0.5224	135.774 KB	12	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	-:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	-	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNROM010000002.1 Salmonella enterica strain PS02397A SAMN37793092-rid19687933.denovo.02, whole genome shotgun sequence	12546..12983	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNROM010000080.1 Salmonella enterica strain PS02397A SAMN37793092-rid19687933.guided.55, whole genome shotgun sequence	8582..9019	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	97.71	262 / 262	ABNROM010000053.1 Salmonella enterica strain PS02397A SAMN37793092-rid19687933.denovo.53, whole genome shotgun sequence	9325..9584																																																						avrA	ABNROM010000036.1	43475..44341	99.08	870	0						
GCA_032607995.1_PDT001925338.1_genomic.fna	Salmonella_enterica	0.5226	58.753 KB	24	aroC_2,dnaN_59,hemD_23,hisD_64,purE_38,sucA_19,thrA_12	1499	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_59	hemD	100	100	hemD_23	hisD	100	100	hisD_64	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_12	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNROO010000012.1 Salmonella enterica strain PS02475A SAMN37793085-rid19687923.denovo.012, whole genome shotgun sequence	75403..75840	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNROO010000157.1 Salmonella enterica strain PS02475A SAMN37793085-rid19687923.guided.123, whole genome shotgun sequence	1862..2299	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNROO010000015.1	81613..82482	99.31	870	0						
GCA_032608005.1_PDT001925337.1_genomic.fna	Salmonella_enterica	0.5234	35.262 KB	43	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	-:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	-	r	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:r:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNROQ010000158.1 Salmonella enterica strain PS02476A SAMN37793086-rid19687913.denovo.159, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNROQ010000314.1 Salmonella enterica strain PS02476A SAMN37793086-rid19687913.guided.263, whole genome shotgun sequence	594..1031	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABNROQ010000166.1 Salmonella enterica strain PS02476A SAMN37793086-rid19687913.denovo.167, whole genome shotgun sequence	5367..5628																																																						avrA	ABNROQ010000029.1	43569..44438	98.851	870	0						
GCA_032608035.1_PDT001925336.1_genomic.fna	Salmonella_enterica	0.5228	56.483 KB	27	aroC_20,dnaN_4,hemD_23,hisD_14,purE_16,sucA_19,thrA_140	423	-:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_20	dnaN	100	100	dnaN_4	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_19	thrA	100	100	thrA_140	-	b	-	Salmonella enterica subspecies enterica (subspecies I)	I -:b:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNROP010000055.1 Salmonella enterica strain PS02477A SAMN37793087-rid19687903.denovo.055, whole genome shotgun sequence	15401..15838	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNROP010000171.1 Salmonella enterica strain PS02477A SAMN37793087-rid19687903.guided.131, whole genome shotgun sequence	1496..1933	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032608055.1_PDT001925335.1_genomic.fna	Salmonella_enterica	0.5236	57.569 KB	25	aroC_2,dnaN_4,hemD_40,hisD_43,purE_481,sucA_2,thrA_425	2125	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_4	hemD	100	100	hemD_40	hisD	100	100	hisD_43	purE	100	100	purE_481	sucA	100	100	sucA_2	thrA	100	100	thrA_425	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNROR010000051.1 Salmonella enterica strain PS02478A SAMN37793088-rid19688403.denovo.051, whole genome shotgun sequence	15437..15874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNROR010000162.1 Salmonella enterica strain PS02478A SAMN37793088-rid19688403.guided.132, whole genome shotgun sequence	899..1336	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNROR010000065.1	24877..25746	99.77	870	0						
GCA_032608075.1_PDT001925334.1_genomic.fna	Salmonella_enterica	0.5213	52.085 KB	29	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pSE11)	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNROS010000011.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310372 SAMN37793083-rid19688393.denovo.011, whole genome shotgun sequence	52223..52660	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNROS010000210.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310372 SAMN37793083-rid19688393.guided.058, whole genome shotgun sequence	13806..14243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNROS010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310372 SAMN37793083-rid19688393.denovo.100, whole genome shotgun sequence	4356..4615																																																						avrA	ABNROS010000037.1	39474..40343	99.655	870	0						
GCA_032608095.1_PDT001925333.1_genomic.fna	Salmonella_enterica	0.523	48.828 KB	30	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNROT010000085.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310368 SAMN37792870-rid19687893.denovo.085, whole genome shotgun sequence	1543..1980	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNROT010000220.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310368 SAMN37792870-rid19687893.guided.152, whole genome shotgun sequence	1403..1840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNROT010000151.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310368 SAMN37792870-rid19687893.denovo.154, whole genome shotgun sequence	1138..1780	enterobacteriales	IncFII(S)	100	262 / 262	ABNROT010000135.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310368 SAMN37792870-rid19687893.denovo.137, whole genome shotgun sequence	3291..3552																																																avrA	ABNROT010000031.1	43554..44423	99.54	870	0						
GCA_032608115.1_PDT001925331.1_genomic.fna	Salmonella_enterica	0.5219	120.627 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNROW010000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310370 SAMN37792872-rid19687873.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNROW010000096.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310370 SAMN37792872-rid19687873.guided.45, whole genome shotgun sequence	12383..12820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNROW010000066.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310370 SAMN37792872-rid19687873.denovo.68, whole genome shotgun sequence	6835..7477	enterobacteriales	IncFII(S)	100	262 / 262	ABNROW010000060.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310370 SAMN37792872-rid19687873.denovo.62, whole genome shotgun sequence	12533..12794																																																avrA	ABNROW010000013.1	117530..118398	100	869	0						
GCA_032608135.1_PDT001925332.1_genomic.fna	Salmonella_enterica	0.5216	141.832 KB	13	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNROU010000015.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310371 SAMN37793082-rid19687883.denovo.15, whole genome shotgun sequence	77748..78185	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNROU010000080.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310371 SAMN37793082-rid19687883.guided.45, whole genome shotgun sequence	7502..7939	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNROU010000051.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310371 SAMN37793082-rid19687883.denovo.54, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNROU010000058.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310371 SAMN37793082-rid19687883.denovo.61, whole genome shotgun sequence	3380..3641																																																avrA	ABNROU010000007.1	174850..175719	99.54	870	0						
GCA_032608155.1_PDT001925329.1_genomic.fna	Salmonella_enterica	0.5209	104.238 KB	16	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNRPB010000025.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310367 SAMN37792869-rid19688373.denovo.025, whole genome shotgun sequence	52248..52685	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNRPB010000121.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310367 SAMN37792869-rid19688373.guided.049, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRPB010000003.1	97869..98738	98.966	870	0						
GCA_032608195.1_PDT001925328.1_genomic.fna	Salmonella_enterica	0.5241	48.75 KB	33	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNRPA010000011.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310369 SAMN37792871-rid19687863.denovo.011, whole genome shotgun sequence	52102..52539	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNRPA010000182.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310369 SAMN37792871-rid19687863.guided.107, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRPA010000040.1	43142..44011	99.655	870	0						
GCA_032608515.1_PDT001925313.1_genomic.fna	Salmonella_enterica	0.5213	88.634 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNRPP010000013.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310366 SAMN37791996-rid19687763.denovo.013, whole genome shotgun sequence	84702..85139	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNRPP010000134.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310366 SAMN37791996-rid19687763.guided.059, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNRPP010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310366 SAMN37791996-rid19687763.denovo.076, whole genome shotgun sequence	4504..4763	enterobacteriales	IncX1	100	373 / 373	ABNRPP010000091.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310366 SAMN37791996-rid19687763.denovo.094, whole genome shotgun sequence	5953..6325																																																avrA	ABNRPP010000037.1	39484..40353	99.655	870	0						
GCA_032608635.1_PDT001925308.1_genomic.fna	Salmonella_enterica	0.5223	94.499 KB	16	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440I,Col440I,Col440I	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNRPT010000040.1 Salmonella enterica subsp. enterica serovar Panama strain FSIS32310365 SAMN37791995-rid19688293.denovo.041, whole genome shotgun sequence	15395..15832	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNRPT010000106.1 Salmonella enterica subsp. enterica serovar Panama strain FSIS32310365 SAMN37791995-rid19688293.guided.053, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNRPT010000087.1 Salmonella enterica subsp. enterica serovar Panama strain FSIS32310365 SAMN37791995-rid19688293.denovo.090, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNRPT010000108.1 Salmonella enterica subsp. enterica serovar Panama strain FSIS32310365 SAMN37791995-rid19688293.guided.093, whole genome shotgun sequence	620..1264	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNRPT010000084.1 Salmonella enterica subsp. enterica serovar Panama strain FSIS32310365 SAMN37791995-rid19688293.denovo.087, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNRPT010000087.1 Salmonella enterica subsp. enterica serovar Panama strain FSIS32310365 SAMN37791995-rid19688293.denovo.090, whole genome shotgun sequence	1522..1652		enterobacteriales	Col440I	94.59	111 / 114	ABNRPT010000081.1 Salmonella enterica subsp. enterica serovar Panama strain FSIS32310365 SAMN37791995-rid19688293.denovo.084, whole genome shotgun sequence	3175..3285		enterobacteriales	Col440I	93.64	110 / 114	ABNRPT010000088.1 Salmonella enterica subsp. enterica serovar Panama strain FSIS32310365 SAMN37791995-rid19688293.denovo.091, whole genome shotgun sequence	1568..1677		enterobacteriales	Col440I	91.23	114 / 114	ABNRPT010000108.1 Salmonella enterica subsp. enterica serovar Panama strain FSIS32310365 SAMN37791995-rid19688293.guided.093, whole genome shotgun sequence	3..116																											avrA	ABNRPT010000003.1	95581..96450	98.966	870	0						
GCA_032608815.1_PDT001925298.1_genomic.fna	Salmonella_enterica	0.5222	96.242 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNRQB010000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310279 SAMN37791984-rid19688253.denovo.022, whole genome shotgun sequence	15442..15879	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNRQB010000109.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310279 SAMN37791984-rid19688253.guided.044, whole genome shotgun sequence	24915..25352	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNRQB010000071.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310279 SAMN37791984-rid19688253.denovo.074, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNRQB010000044.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310279 SAMN37791984-rid19688253.denovo.045, whole genome shotgun sequence	1792..2053																																																avrA	ABNRQB010000005.1	108259..109127	100	869	0						
GCA_032608835.1_PDT001925297.1_genomic.fna	Salmonella_enterica	0.5222	79.976 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,qnrB19,qnrB19,sul1,tet(G),tet(A),tet(M),tet(G),tet(A),tet(M)	0		4	Col(pHAD28),Col(pHAD28),Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNRQD010000027.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.denovo.027, whole genome shotgun sequence	15507..15944	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNRQD010000032.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.denovo.032, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNRQD010000128.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.guided.049, whole genome shotgun sequence	14432..14869	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNRQD010000137.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.guided.128, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNRQD010000083.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.denovo.086, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNRQD010000136.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.guided.123, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNRQD010000083.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.denovo.086, whole genome shotgun sequence	6603..7817	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNRQD010000131.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.guided.089, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNRQD010000107.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.denovo.113, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNRQD010000134.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.guided.115, whole genome shotgun sequence	513..1157	Ciprofloxacin	EU432277	sul1	100	840/840	ABNRQD010000133.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.guided.111, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNRQD010000083.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.denovo.086, whole genome shotgun sequence	4491..5666	Doxycycline, Tetracycline	AF133140	tet(A)	99.92	1200/1200	ABNRQD010000099.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.denovo.103, whole genome shotgun sequence	2385..3584	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	ABNRQD010000108.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.denovo.114, whole genome shotgun sequence	91..2010	Doxycycline, Tetracycline, Minocycline	X04388	tet(G)	100	1176/1176	ABNRQD010000131.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.guided.089, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140	tet(A)	99.92	1200/1200	ABNRQD010000132.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.guided.108, whole genome shotgun sequence	86..1285	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	ABNRQD010000135.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.guided.116, whole genome shotgun sequence	269..2188	Doxycycline, Tetracycline, Minocycline	X04388																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNRQD010000102.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.denovo.106, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNRQD010000107.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.denovo.113, whole genome shotgun sequence	1522..1652		enterobacteriales	Col440I	92.04	113 / 114	ABNRQD010000105.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.denovo.110, whole genome shotgun sequence	1334..1446		enterobacteriales	IncFIB(S)	100	643 / 643	ABNRQD010000046.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.denovo.046, whole genome shotgun sequence	24679..25321		enterobacteriales	IncFII(S)	100	262 / 262	ABNRQD010000046.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310208 SAMN37791981-rid19687673.denovo.046, whole genome shotgun sequence	9333..9594																											avrA	ABNRQD010000011.1	103242..104111	99.885	870	0						
GCA_032608855.1_PDT001925295.1_genomic.fna	Salmonella_enterica	0.5225	119.974 KB	12	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNRQC010000006.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310277 SAMN37791982-rid19687653.denovo.06, whole genome shotgun sequence	52768..53205	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNRQC010000069.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310277 SAMN37791982-rid19687653.guided.37, whole genome shotgun sequence	30266..30703	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRQC010000009.1	102570..103438	99.655	869	0						
GCA_032608875.1_PDT001925296.1_genomic.fna	Salmonella_enterica	0.5181	94.179 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNRQE010000022.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310278 SAMN37791983-rid19687663.denovo.022, whole genome shotgun sequence	1025..1462	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNRQE010000159.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310278 SAMN37791983-rid19687663.guided.083, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNRQE010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310278 SAMN37791983-rid19687663.denovo.049, whole genome shotgun sequence	28960..29286	enterobacteriales	IncHI2A	99.52	630 / 630	ABNRQE010000069.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310278 SAMN37791983-rid19687663.denovo.071, whole genome shotgun sequence	14226..14855		enterobacteriales	IncX1	100	373 / 373	ABNRQE010000081.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310278 SAMN37791983-rid19687663.denovo.084, whole genome shotgun sequence	2218..2590																																									avrA	ABNRQE010000040.1	39502..40371	99.655	870	0						
GCA_032609075.1_PDT001925284.1_genomic.fna	Salmonella_enterica	0.5214	239.136 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNRQP010000014.1 Salmonella enterica strain PNUSAS390156 SAMN37791182-rid19688203.denovo.14, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNRQP010000049.1 Salmonella enterica strain PNUSAS390156 SAMN37791182-rid19688203.guided.15, whole genome shotgun sequence	33194..33631	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNRQP010000016.1 Salmonella enterica strain PNUSAS390156 SAMN37791182-rid19688203.denovo.17, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNRQP010000016.1 Salmonella enterica strain PNUSAS390156 SAMN37791182-rid19688203.denovo.17, whole genome shotgun sequence	30407..30668																																																avrA	ABNRQP010000002.1	401197..402065	100	869	0						
GCA_032609115.1_PDT001925283.1_genomic.fna	Salmonella_enterica	0.5214	324.585 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNRQQ010000003.1 Salmonella enterica strain PNUSAS390165 SAMN37791177-rid19687583.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNRQQ010000040.1 Salmonella enterica strain PNUSAS390165 SAMN37791177-rid19687583.guided.14, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNRQQ010000016.1 Salmonella enterica strain PNUSAS390165 SAMN37791177-rid19687583.denovo.17, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNRQQ010000016.1 Salmonella enterica strain PNUSAS390165 SAMN37791177-rid19687583.denovo.17, whole genome shotgun sequence	30407..30668																																																avrA	ABNRQQ010000002.1	401436..402304	100	869	0						
GCA_032609135.1_PDT001925281.1_genomic.fna	Salmonella_enterica	0.5211	263.748 KB	6	aroC_17,dnaN_2,hemD_10,hisD_166,purE_147,sucA_21,thrA_119	493	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	pXuzhou21	aroC	100	100	aroC_17	dnaN	100	100	dnaN_2	hemD	100	100	hemD_10	hisD	100	100	hisD_166	purE	100	100	purE_147	sucA	100	100	sucA_21	thrA	100	100	thrA_119	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNRQT010000001.1 Salmonella enterica strain PNUSAS390164 SAMN37791170-rid19687563.denovo.01, whole genome shotgun sequence	358594..359031	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNRQT010000041.1 Salmonella enterica strain PNUSAS390164 SAMN37791170-rid19687563.guided.19, whole genome shotgun sequence	42427..42864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	pXuzhou21	99.86	720 / 720	ABNRQT010000024.1 Salmonella enterica strain PNUSAS390164 SAMN37791170-rid19687563.denovo.27, whole genome shotgun sequence	23691..24410																																																						avrA	ABNRQT010000002.1	149680..150549	99.655	870	0						
GCA_032609155.1_PDT001925282.1_genomic.fna	Salmonella_enterica	0.5223	698.694 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNRQR010000001.1 Salmonella enterica strain PNUSAS390162 SAMN37791176-rid19687573.denovo.01, whole genome shotgun sequence	681529..681966	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNRQR010000021.1 Salmonella enterica strain PNUSAS390162 SAMN37791176-rid19687573.guided.13, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRQR010000003.1	515634..516503	99.77	870	0						
GCA_032609175.1_PDT001925280.1_genomic.fna	Salmonella_enterica	0.521	404.126 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNRQU010000002.1 Salmonella enterica strain PNUSAS390154 SAMN37791189-rid19687553.denovo.02, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNRQU010000030.1 Salmonella enterica strain PNUSAS390154 SAMN37791189-rid19687553.guided.16, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNRQU010000015.1 Salmonella enterica strain PNUSAS390154 SAMN37791189-rid19687553.denovo.15, whole genome shotgun sequence	34958..35491																																																						avrA	ABNRQU010000003.1	394780..395648	99.425	870	0						
GCA_032609195.1_PDT001925279.1_genomic.fna	Salmonella_enterica	0.522	320.012 KB	6	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNRQS010000001.1 Salmonella enterica strain PNUSAS390160 SAMN37791184-rid19688193.denovo.01, whole genome shotgun sequence	378504..378941	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNRQS010000041.1 Salmonella enterica strain PNUSAS390160 SAMN37791184-rid19688193.guided.13, whole genome shotgun sequence	16453..16890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRQS010000008.1	145338..146207	99.425	870	0						
GCA_032609215.1_PDT001925277.1_genomic.fna	Salmonella_enterica	0.5217	758.526 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRQV010000001.1 Salmonella enterica strain PNUSAS390145 SAMN37791178-rid19687543.denovo.01, whole genome shotgun sequence	602658..603095	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNRQV010000024.1 Salmonella enterica strain PNUSAS390145 SAMN37791178-rid19687543.guided.11, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNRQV010000004.1	401380..402249	99.655	870	0						
GCA_032609255.1_PDT001925278.1_genomic.fna	Salmonella_enterica	0.5209	523.175 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncR,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRQW010000001.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.denovo.01, whole genome shotgun sequence	172199..172636	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNRQW010000019.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.denovo.22, whole genome shotgun sequence	4165..4944	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNRQW010000031.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.guided.12, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNRQW010000035.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.guided.29, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNRQW010000019.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.denovo.22, whole genome shotgun sequence	3169..4035	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNRQW010000035.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.guided.29, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNRQW010000019.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.denovo.22, whole genome shotgun sequence	11599..12504	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNRQW010000034.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.guided.26, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNRQW010000021.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.denovo.24, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNRQW010000036.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNRQW010000019.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.denovo.22, whole genome shotgun sequence	2253..2909	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNRQW010000035.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.guided.29, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNRQW010000019.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.denovo.22, whole genome shotgun sequence	5449..6288	Sulfamethoxazole	U12338	sul1	100	840/840	ABNRQW010000038.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.guided.34, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNRQW010000021.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.denovo.24, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNRQW010000037.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.guided.32, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNRQW010000021.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.denovo.24, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNRQW010000037.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.guided.32, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNRQW010000018.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.denovo.21, whole genome shotgun sequence	8402..8652	enterobacteriales	IncX1	94.92	374 / 374	ABNRQW010000015.1 Salmonella enterica strain PNUSAS390149 SAMN37791180-rid19688183.denovo.17, whole genome shotgun sequence	13796..14169																																																avrA	ABNRQW010000002.1	552947..553816	99.77	870	0						
GCA_032609275.1_PDT001925276.1_genomic.fna	Salmonella_enterica	0.5224	399.442 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNRQX010000001.1 Salmonella enterica strain PNUSAS390148 SAMN37791171-rid19687533.denovo.01, whole genome shotgun sequence	666961..667398	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNRQX010000029.1 Salmonella enterica strain PNUSAS390148 SAMN37791171-rid19687533.guided.11, whole genome shotgun sequence	42403..42840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNRQX010000002.1	556957..557826	99.31	870	0						
GCA_032609295.1_PDT001925274.1_genomic.fna	Salmonella_enterica	0.5214	324.612 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNRQZ010000003.1 Salmonella enterica strain PNUSAS390157 SAMN37791190-rid19688173.denovo.03, whole genome shotgun sequence	68379..68816	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNRQZ010000047.1 Salmonella enterica strain PNUSAS390157 SAMN37791190-rid19688173.guided.14, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNRQZ010000014.1 Salmonella enterica strain PNUSAS390157 SAMN37791190-rid19688173.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNRQZ010000014.1 Salmonella enterica strain PNUSAS390157 SAMN37791190-rid19688173.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNRQZ010000001.1	401322..402190	100	869	0						
GCA_032609315.1_PDT001925275.1_genomic.fna	Salmonella_enterica	0.5205	477.399 KB	4	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(p96A)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNRQY010000001.1 Salmonella enterica strain PNUSAS390147 SAMN37791186-rid19687523.denovo.01, whole genome shotgun sequence	592476..592913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNRQY010000034.1 Salmonella enterica strain PNUSAS390147 SAMN37791186-rid19687523.guided.16, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNRQY010000022.1 Salmonella enterica strain PNUSAS390147 SAMN37791186-rid19687523.denovo.25, whole genome shotgun sequence	2209..2339	enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNRQY010000015.1 Salmonella enterica strain PNUSAS390147 SAMN37791186-rid19687523.denovo.17, whole genome shotgun sequence	15755..16288																																																avrA	ABNRQY010000003.1	544332..545200	99.655	869	0						
GCA_032609335.1_PDT001925273.1_genomic.fna	Salmonella_enterica	0.521	371.402 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRRA010000001.1 Salmonella enterica strain PNUSAS390158 SAMN37791183-rid19687513.denovo.01, whole genome shotgun sequence	558281..558718	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRRA010000032.1 Salmonella enterica strain PNUSAS390158 SAMN37791183-rid19687513.guided.17, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRRA010000010.1	182323..183191	99.195	870	0						
GCA_032609355.1_PDT001925272.1_genomic.fna	Salmonella_enterica	0.5218	371.026 KB	6	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNRRB010000003.1 Salmonella enterica strain PNUSAS390152 SAMN37791187-rid19687503.denovo.03, whole genome shotgun sequence	255733..256170	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNRRB010000033.1 Salmonella enterica strain PNUSAS390152 SAMN37791187-rid19687503.guided.20, whole genome shotgun sequence	42411..42848	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNRRB010000002.1	275711..276580	99.31	870	0						
GCA_032609375.1_PDT001925271.1_genomic.fna	Salmonella_enterica	0.5193	435.048 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRRC010000001.1 Salmonella enterica strain PNUSAS390153 SAMN37791188-rid19687493.denovo.01, whole genome shotgun sequence	645096..645533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNRRC010000019.1 Salmonella enterica strain PNUSAS390153 SAMN37791188-rid19687493.guided.11, whole genome shotgun sequence	42442..42879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRRC010000003.1	515405..516275	99.656	871	0						
GCA_032609395.1_PDT001925270.1_genomic.fna	Salmonella_enterica	0.5215	712.792 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNRRD010000001.1 Salmonella enterica strain PNUSAS390161 SAMN37791175-rid19687483.denovo.01, whole genome shotgun sequence	482163..482600	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNRRD010000023.1 Salmonella enterica strain PNUSAS390161 SAMN37791175-rid19687483.guided.11, whole genome shotgun sequence	24487..24924	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRRD010000003.1	563782..564650	99.655	870	0						
GCA_032609415.1_PDT001925268.1_genomic.fna	Salmonella_enterica	0.5212	344.717 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRRF010000001.1 Salmonella enterica strain PNUSAS390155 SAMN37791181-rid19688153.denovo.01, whole genome shotgun sequence	558055..558492	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRRF010000044.1 Salmonella enterica strain PNUSAS390155 SAMN37791181-rid19688153.guided.20, whole genome shotgun sequence	11947..12384	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRRF010000011.1	95222..96090	99.195	870	0						
GCA_032609435.1_PDT001925269.1_genomic.fna	Salmonella_enterica	0.5216	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNRRE010000001.1 Salmonella enterica strain PNUSAS390146 SAMN37791179-rid19688163.denovo.01, whole genome shotgun sequence	790282..790719	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNRRE010000026.1 Salmonella enterica strain PNUSAS390146 SAMN37791179-rid19688163.guided.14, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.39	446 / 445	ABNRRE010000014.1 Salmonella enterica strain PNUSAS390146 SAMN37791179-rid19688163.denovo.15, whole genome shotgun sequence	2265..2709	enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABNRRE010000014.1 Salmonella enterica strain PNUSAS390146 SAMN37791179-rid19688163.denovo.15, whole genome shotgun sequence	2970..3182																																																avrA	ABNRRE010000002.1	39574..40443	98.851	870	0						
GCA_032609455.1_PDT001925267.1_genomic.fna	Salmonella_enterica	0.5222	443.286 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNRRG010000001.1 Salmonella enterica strain PNUSAS390163 SAMN37791185-rid19687473.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNRRG010000026.1 Salmonella enterica strain PNUSAS390163 SAMN37791185-rid19687473.guided.13, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRRG010000003.1	94816..95685	99.655	870	0						
GCA_032609495.1_PDT001925265.1_genomic.fna	Salmonella_enterica	0.5213	430.063 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRRI010000001.1 Salmonella enterica strain PNUSAS390159 SAMN37791169-rid19687453.denovo.01, whole genome shotgun sequence	602232..602669	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRRI010000031.1 Salmonella enterica strain PNUSAS390159 SAMN37791169-rid19687453.guided.13, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRRI010000010.1	173377..174245	99.195	870	0						
GCA_032609515.1_PDT001925264.1_genomic.fna	Salmonella_enterica	0.5215	438.241 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNRRK010000001.1 Salmonella enterica strain PNUSAS390151 SAMN37791174-rid19688143.denovo.01, whole genome shotgun sequence	225616..226053	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNRRK010000021.1 Salmonella enterica strain PNUSAS390151 SAMN37791174-rid19688143.guided.13, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRRK010000002.1	563810..564679	99.77	870	0						
GCA_032609535.1_PDT001925263.1_genomic.fna	Salmonella_enterica	0.5222	193.114 KB	8	aroC_17,dnaN_2,hemD_10,hisD_166,purE_147,sucA_21,thrA_119	493	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_2	hemD	100	100	hemD_10	hisD	100	100	hisD_166	purE	100	100	purE_147	sucA	100	100	sucA_21	thrA	100	100	thrA_119	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNRRJ010000001.1 Salmonella enterica strain PNUSAS390150 SAMN37791173-rid19687443.denovo.01, whole genome shotgun sequence	358593..359030	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNRRJ010000058.1 Salmonella enterica strain PNUSAS390150 SAMN37791173-rid19687443.guided.29, whole genome shotgun sequence	34083..34520	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNRRJ010000002.1	93954..94823	99.655	870	0						
GCA_032609555.1_PDT001925262.1_genomic.fna	Salmonella_enterica	0.5209	76.356 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNRRM010000005.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017537 SAMN37789541-rid19687433.denovo.005, whole genome shotgun sequence	12862..13296	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNRRM010000106.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017537 SAMN37789541-rid19687433.guided.067, whole genome shotgun sequence	8076..8510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032609575.1_PDT001925261.1_genomic.fna	Salmonella_enterica	0.5215	57.254 KB	27	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNRRL010000023.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017539 SAMN37789543-rid19687423.denovo.023, whole genome shotgun sequence	12840..13274	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNRRL010000157.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017539 SAMN37789543-rid19687423.guided.072, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032609595.1_PDT001925260.1_genomic.fna	Salmonella_enterica	0.5211	87.572 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNRRN010000002.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017538 SAMN37789542-rid19687413.denovo.002, whole genome shotgun sequence	29910..30344	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNRRN010000119.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017538 SAMN37789542-rid19687413.guided.065, whole genome shotgun sequence	8076..8510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032609615.1_PDT001925259.1_genomic.fna	Salmonella_enterica	0.5207	139.805 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNRRO010000022.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017541 SAMN37789545-rid19688133.denovo.22, whole genome shotgun sequence	29910..30344	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNRRO010000077.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017541 SAMN37789545-rid19688133.guided.48, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032609635.1_PDT001925257.1_genomic.fna	Salmonella_enterica	0.5206	143.344 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNRRQ010000008.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017543 SAMN37789547-rid19687403.denovo.08, whole genome shotgun sequence	29910..30344	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNRRQ010000069.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017543 SAMN37789547-rid19687403.guided.40, whole genome shotgun sequence	8076..8510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032609655.1_PDT001925258.1_genomic.fna	Salmonella_enterica	0.5206	109.851 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-116,blaTEM-116	1	gyrA_p.D87N	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNRRP010000023.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017544 SAMN37789548-rid19688123.denovo.23, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNRRP010000085.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017544 SAMN37789548-rid19688123.guided.56, whole genome shotgun sequence	9025..9459	Amikacin, Tobramycin	NC_003197	blaTEM-116	100	861/861	ABNRRP010000061.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017544 SAMN37789548-rid19688123.denovo.63, whole genome shotgun sequence	1585..2445	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY425988	blaTEM-116	100	861/861	ABNRRP010000088.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017544 SAMN37789548-rid19688123.guided.71, whole genome shotgun sequence	1616..2476	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY425988																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032609675.1_PDT001925256.1_genomic.fna	Salmonella_enterica	0.5214	61.646 KB	24	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNRRR010000009.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017542 SAMN37789546-rid19687393.denovo.009, whole genome shotgun sequence	29910..30344	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNRRR010000129.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017542 SAMN37789546-rid19687393.guided.071, whole genome shotgun sequence	15569..16003	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032609795.1_PDT001925250.1_genomic.fna	Salmonella_enterica	0.5209	149.125 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNRRX010000025.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017540 SAMN37789544-rid19687363.denovo.25, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNRRX010000060.1 Salmonella enterica subsp. enterica serovar Typhi strain PNCS017540 SAMN37789544-rid19687363.guided.51, whole genome shotgun sequence	1568..2002	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032612195.1_PDT001924941.1_genomic.fna	Salmonella_enterica	0.5214	490.04 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRTX010000001.1 Salmonella enterica strain PNUSAS390290 SAMN37771488-rid19677703.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRTX010000024.1 Salmonella enterica strain PNUSAS390290 SAMN37771488-rid19677703.guided.19, whole genome shotgun sequence	8005..8442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRTX010000016.1 Salmonella enterica strain PNUSAS390290 SAMN37771488-rid19677703.denovo.18, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNRTX010000013.1 Salmonella enterica strain PNUSAS390290 SAMN37771488-rid19677703.denovo.13, whole genome shotgun sequence	3704..3965																																																avrA	ABNRTX010000002.1	505461..506330	99.54	870	0						
GCA_032612215.1_PDT001924942.1_genomic.fna	Salmonella_enterica	0.5188	384.225 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15?,purE_12,sucA_15,thrA_4	23?	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pCRY),IncX3(pEC14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	99.4011976047904	hisD_15?	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNRTW010000005.1 Salmonella enterica strain PNUSAS390291 SAMN37771491-rid19679063.denovo.05, whole genome shotgun sequence	83341..83778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNRTW010000050.1 Salmonella enterica strain PNUSAS390291 SAMN37771491-rid19679063.guided.31, whole genome shotgun sequence	5208..5645	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	94.27	593 / 593	ABNRTW010000025.1 Salmonella enterica strain PNUSAS390291 SAMN37771491-rid19679063.denovo.26, whole genome shotgun sequence	18540..19132	enterobacteriales	IncX3(pEC14)	93.58	374 / 374	ABNRTW010000019.1 Salmonella enterica strain PNUSAS390291 SAMN37771491-rid19679063.denovo.19, whole genome shotgun sequence	35268..35641																																																											
GCA_032612235.1_PDT001924940.1_genomic.fna	Salmonella_enterica	0.5198	430.96 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncI2(Delta)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRTY010000010.1 Salmonella enterica strain PNUSAS390295 SAMN37771493-rid19676213.denovo.10, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRTY010000028.1 Salmonella enterica strain PNUSAS390295 SAMN37771493-rid19676213.guided.24, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNRTY010000016.1 Salmonella enterica strain PNUSAS390295 SAMN37771493-rid19676213.denovo.16, whole genome shotgun sequence	34957..35490	enterobacteriales	IncI2(Delta)	100	316 / 316	ABNRTY010000018.1 Salmonella enterica strain PNUSAS390295 SAMN37771493-rid19676213.denovo.18, whole genome shotgun sequence	28129..28444																																																avrA	ABNRTY010000002.1	187844..188710	98.966	870	0						
GCA_032612265.1_PDT001924939.1_genomic.fna	Salmonella_enterica	0.5221	407.083 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNRTZ010000002.1 Salmonella enterica strain PNUSAS390294 SAMN37771489-rid19679053.denovo.02, whole genome shotgun sequence	444396..444833	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNRTZ010000031.1 Salmonella enterica strain PNUSAS390294 SAMN37771489-rid19679053.guided.24, whole genome shotgun sequence	1249..1686	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032612295.1_PDT001924938.1_genomic.fna	Salmonella_enterica	0.5213	167.314 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRUA010000003.1 Salmonella enterica strain PNUSAS390293 SAMN37771492-rid19680613.denovo.03, whole genome shotgun sequence	6386..6823	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRUA010000046.1 Salmonella enterica strain PNUSAS390293 SAMN37771492-rid19680613.guided.34, whole genome shotgun sequence	17322..17759	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRUA010000035.1 Salmonella enterica strain PNUSAS390293 SAMN37771492-rid19680613.denovo.36, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNRUA010000038.1 Salmonella enterica strain PNUSAS390293 SAMN37771492-rid19680613.denovo.40, whole genome shotgun sequence	3393..3654																																																avrA	ABNRUA010000001.1	175197..176066	99.54	870	0						
GCA_032612315.1_PDT001924936.1_genomic.fna	Salmonella_enterica	0.5213	687.684 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNRUC010000001.1 Salmonella enterica strain PNUSAS390292 SAMN37771487-rid19677693.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNRUC010000018.1 Salmonella enterica strain PNUSAS390292 SAMN37771487-rid19677693.guided.16, whole genome shotgun sequence	1910..2347	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032612335.1_PDT001924934.1_genomic.fna	Salmonella_enterica	0.5219	272.63 KB	6	aroC_491,dnaN_347,hemD_18,hisD_438,purE_2,sucA_347,thrA_170	2090	3,10:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_491	dnaN	100	100	dnaN_347	hemD	100	100	hemD_18	hisD	100	100	hisD_438	purE	100	100	purE_2	sucA	100	100	sucA_347	thrA	100	100	thrA_170	3,10	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Amsterdam		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNRUF010000005.1 Salmonella enterica strain PNUSAS320986 isolate CDPHFDLB-FM20-00233-B SAMN37771128-rid19679033.denovo.05, whole genome shotgun sequence	212353..212790	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNRUF010000055.1 Salmonella enterica strain PNUSAS320986 isolate CDPHFDLB-FM20-00233-B SAMN37771128-rid19679033.guided.28, whole genome shotgun sequence	8978..9415	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032612375.1_PDT001924937.1_genomic.fna	Salmonella_enterica	0.5206	433.309 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRUB010000001.1 Salmonella enterica strain PNUSAS390289 SAMN37771490-rid19679043.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRUB010000024.1 Salmonella enterica strain PNUSAS390289 SAMN37771490-rid19679043.guided.20, whole genome shotgun sequence	3364..3801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRUB010000017.1 Salmonella enterica strain PNUSAS390289 SAMN37771490-rid19679043.denovo.17, whole genome shotgun sequence	6821..7463	enterobacteriales	IncFII(S)	100	262 / 262	ABNRUB010000018.1 Salmonella enterica strain PNUSAS390289 SAMN37771490-rid19679043.denovo.18, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	98.93	374 / 374	ABNRUB010000015.1 Salmonella enterica strain PNUSAS390289 SAMN37771490-rid19679043.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNRUB010000002.1	553684..554553	99.54	870	0						
GCA_032612415.1_PDT001924932.1_genomic.fna	Salmonella_enterica	0.5214	487.482 KB	4	aroC_491,dnaN_347,hemD_18,hisD_438,purE_2,sucA_347,thrA_170	2090	3,10:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_491	dnaN	100	100	dnaN_347	hemD	100	100	hemD_18	hisD	100	100	hisD_438	purE	100	100	purE_2	sucA	100	100	sucA_347	thrA	100	100	thrA_170	3,10	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Amsterdam		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNRUG010000002.1 Salmonella enterica strain PNUSAS320985 isolate CDPHFDLB-FM20-00246-B SAMN37771131-rid19679023.denovo.02, whole genome shotgun sequence	485269..485706	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNRUG010000047.1 Salmonella enterica strain PNUSAS320985 isolate CDPHFDLB-FM20-00246-B SAMN37771131-rid19679023.guided.24, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032612435.1_PDT001924930.1_genomic.fna	Salmonella_enterica	0.5209	93.619 KB	18	aroC_491,dnaN_347,hemD_18,hisD_438,purE_2,sucA_347,thrA_170	2090	3,10:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_491	dnaN	100	100	dnaN_347	hemD	100	100	hemD_18	hisD	100	100	hisD_438	purE	100	100	purE_2	sucA	100	100	sucA_347	thrA	100	100	thrA_170	3,10	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Amsterdam		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNRUH010000003.1 Salmonella enterica strain PNUSAS320988 isolate CDPHFDLB-FM20-00207-B SAMN37771129-rid19676193.denovo.003, whole genome shotgun sequence	40916..41353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNRUH010000142.1 Salmonella enterica strain PNUSAS320988 isolate CDPHFDLB-FM20-00207-B SAMN37771129-rid19676193.guided.056, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032612495.1_PDT001924927.1_genomic.fna	Salmonella_enterica	0.5213	245.532 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNRUL010000001.1 Salmonella enterica strain PNUSAS390288 SAMN37771384-rid19677673.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNRUL010000056.1 Salmonella enterica strain PNUSAS390288 SAMN37771384-rid19677673.guided.37, whole genome shotgun sequence	5404..5841	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNRUL010000031.1 Salmonella enterica strain PNUSAS390288 SAMN37771384-rid19677673.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABNRUL010000009.1	94091..94960	99.655	870	0						
GCA_032612515.1_PDT001924928.1_genomic.fna	Salmonella_enterica	0.5218	239.399 KB	7	aroC_491,dnaN_347,hemD_18,hisD_438,purE_2,sucA_347,thrA_170	2090	3,10:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_491	dnaN	100	100	dnaN_347	hemD	100	100	hemD_18	hisD	100	100	hisD_438	purE	100	100	purE_2	sucA	100	100	sucA_347	thrA	100	100	thrA_170	3,10	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Amsterdam		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNRUK010000004.1 Salmonella enterica strain PNUSAS320984 isolate CDPHFDLB-FM20-00253-B SAMN37771130-rid19680603.denovo.04, whole genome shotgun sequence	212467..212904	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNRUK010000057.1 Salmonella enterica strain PNUSAS320984 isolate CDPHFDLB-FM20-00253-B SAMN37771130-rid19680603.guided.42, whole genome shotgun sequence	1479..1916	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032612535.1_PDT001924926.1_genomic.fna	Salmonella_enterica	0.5218	209.661 KB	7	aroC_491,dnaN_347,hemD_18,hisD_438,purE_2,sucA_347,thrA_170	2090	3,10:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_491	dnaN	100	100	dnaN_347	hemD	100	100	hemD_18	hisD	100	100	hisD_438	purE	100	100	purE_2	sucA	100	100	sucA_347	thrA	100	100	thrA_170	3,10	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Amsterdam		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNRUM010000003.1 Salmonella enterica strain PNUSAS320987 isolate CDPHFDLB-FM20-00232-B SAMN37771132-rid19677663.denovo.03, whole genome shotgun sequence	212467..212904	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.09	413/438	ABNRUM010000065.1 Salmonella enterica strain PNUSAS320987 isolate CDPHFDLB-FM20-00232-B SAMN37771132-rid19677663.guided.62, whole genome shotgun sequence	1..413	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032612575.1_PDT001924924.1_genomic.fna	Salmonella_enterica	0.5212	131.794 KB	8	aroC_491,dnaN_347,hemD_18,hisD_438,purE_2,sucA_347,thrA_170	2090	3,10:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_491	dnaN	100	100	dnaN_347	hemD	100	100	hemD_18	hisD	100	100	hisD_438	purE	100	100	purE_2	sucA	100	100	sucA_347	thrA	100	100	thrA_170	3,10	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Amsterdam		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNRUO010000004.1 Salmonella enterica strain PNUSAS320989 isolate CDPHFDLB-FM20-00198-B SAMN37771127-rid19677653.denovo.04, whole genome shotgun sequence	159634..160071	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNRUO010000076.1 Salmonella enterica strain PNUSAS320989 isolate CDPHFDLB-FM20-00198-B SAMN37771127-rid19677653.guided.39, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032612635.1_PDT001924920.1_genomic.fna	Salmonella_enterica	0.5213	278.786 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNRUR010000002.1 Salmonella enterica strain PNUSAS390286 SAMN37771119-rid19676173.denovo.02, whole genome shotgun sequence	133427..133864	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNRUR010000039.1 Salmonella enterica strain PNUSAS390286 SAMN37771119-rid19676173.denovo.44, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNRUR010000039.1 Salmonella enterica strain PNUSAS390286 SAMN37771119-rid19676173.denovo.44, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNRUR010000064.1 Salmonella enterica strain PNUSAS390286 SAMN37771119-rid19676173.guided.39, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNRUR010000065.1 Salmonella enterica strain PNUSAS390286 SAMN37771119-rid19676173.guided.43, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNRUR010000065.1 Salmonella enterica strain PNUSAS390286 SAMN37771119-rid19676173.guided.43, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNRUR010000048.1 Salmonella enterica strain PNUSAS390286 SAMN37771119-rid19676173.denovo.54, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNRUR010000066.1 Salmonella enterica strain PNUSAS390286 SAMN37771119-rid19676173.guided.52, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNRUR010000039.1 Salmonella enterica strain PNUSAS390286 SAMN37771119-rid19676173.denovo.44, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNRUR010000065.1 Salmonella enterica strain PNUSAS390286 SAMN37771119-rid19676173.guided.43, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNRUR010000035.1 Salmonella enterica strain PNUSAS390286 SAMN37771119-rid19676173.denovo.36, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNRUR010000063.1 Salmonella enterica strain PNUSAS390286 SAMN37771119-rid19676173.guided.38, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNRUR010000001.1	540619..541488	99.885	870	0						
GCA_032612655.1_PDT001924921.1_genomic.fna	Salmonella_enterica	0.5212	296.74 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	1	IncFIB(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRUS010000001.1 Salmonella enterica strain PNUSAS390285 SAMN37771117-rid19677643.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRUS010000048.1 Salmonella enterica strain PNUSAS390285 SAMN37771117-rid19677643.guided.18, whole genome shotgun sequence	5272..5709	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRUS010000021.1 Salmonella enterica strain PNUSAS390285 SAMN37771117-rid19677643.denovo.23, whole genome shotgun sequence	6821..7463																																																						avrA	ABNRUS010000002.1	445243..446112	99.54	870	0						
GCA_032612675.1_PDT001924918.1_genomic.fna	Salmonella_enterica	0.5225	381.694 KB	6	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRUU010000008.1 Salmonella enterica strain PNUSAS390267 SAMN37771083-rid19680593.denovo.08, whole genome shotgun sequence	145307..145744	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNRUU010000035.1 Salmonella enterica strain PNUSAS390267 SAMN37771083-rid19680593.guided.18, whole genome shotgun sequence	13467..13904	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNRUU010000022.1 Salmonella enterica strain PNUSAS390267 SAMN37771083-rid19680593.denovo.23, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNRUU010000041.1 Salmonella enterica strain PNUSAS390267 SAMN37771083-rid19680593.guided.35, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNRUU010000022.1 Salmonella enterica strain PNUSAS390267 SAMN37771083-rid19680593.denovo.23, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNRUU010000040.1 Salmonella enterica strain PNUSAS390267 SAMN37771083-rid19680593.guided.34, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNRUU010000022.1 Salmonella enterica strain PNUSAS390267 SAMN37771083-rid19680593.denovo.23, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNRUU010000039.1 Salmonella enterica strain PNUSAS390267 SAMN37771083-rid19680593.guided.30, whole genome shotgun sequence	3139..3978	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNRUU010000022.1 Salmonella enterica strain PNUSAS390267 SAMN37771083-rid19680593.denovo.23, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNRUU010000039.1 Salmonella enterica strain PNUSAS390267 SAMN37771083-rid19680593.guided.30, whole genome shotgun sequence	6654..7928	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNRUU010000022.1 Salmonella enterica strain PNUSAS390267 SAMN37771083-rid19680593.denovo.23, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNRUU010000039.1 Salmonella enterica strain PNUSAS390267 SAMN37771083-rid19680593.guided.30, whole genome shotgun sequence	5023..5496	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNRUU010000023.1 Salmonella enterica strain PNUSAS390267 SAMN37771083-rid19680593.denovo.27, whole genome shotgun sequence	8402..8652																																																						avrA	ABNRUU010000001.1	553473..554342	99.77	870	0						
GCA_032612695.1_PDT001924917.1_genomic.fna	Salmonella_enterica	0.521	489.733 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRUV010000001.1 Salmonella enterica strain PNUSAS390268 SAMN37771088-rid19678993.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRUV010000024.1 Salmonella enterica strain PNUSAS390268 SAMN37771088-rid19678993.guided.17, whole genome shotgun sequence	7638..8075	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRUV010000014.1 Salmonella enterica strain PNUSAS390268 SAMN37771088-rid19678993.denovo.14, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABNRUV010000014.1 Salmonella enterica strain PNUSAS390268 SAMN37771088-rid19678993.denovo.14, whole genome shotgun sequence	4078..4339																																																avrA	ABNRUV010000002.1	552776..553645	99.54	870	0						
GCA_032612715.1_PDT001924916.1_genomic.fna	Salmonella_enterica	0.5216	271.324 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNRUW010000002.1 Salmonella enterica strain PNUSAS390276 SAMN37771082-rid19677623.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNRUW010000045.1 Salmonella enterica strain PNUSAS390276 SAMN37771082-rid19677623.guided.29, whole genome shotgun sequence	17440..17877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNRUW010000015.1 Salmonella enterica strain PNUSAS390276 SAMN37771082-rid19677623.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNRUW010000015.1 Salmonella enterica strain PNUSAS390276 SAMN37771082-rid19677623.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNRUW010000004.1	174651..175519	100	869	0						
GCA_032612735.1_PDT001924915.1_genomic.fna	Salmonella_enterica	0.5222	401.577 KB	5	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRUY010000008.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.denovo.08, whole genome shotgun sequence	145366..145803	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNRUY010000029.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.denovo.34, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNRUY010000039.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.guided.23, whole genome shotgun sequence	7989..8426	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNRUY010000042.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.guided.33, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNRUY010000029.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.denovo.34, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNRUY010000042.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.guided.33, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNRUY010000027.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.denovo.31, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNRUY010000040.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.guided.29, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNRUY010000024.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.denovo.26, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNRUY010000044.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.guided.39, whole genome shotgun sequence	776..1989	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNRUY010000029.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.denovo.34, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNRUY010000042.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.guided.33, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNRUY010000033.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.denovo.41, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNRUY010000045.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.guided.40, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNRUY010000024.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.denovo.26, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNRUY010000043.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.guided.36, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNRUY010000024.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.denovo.26, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNRUY010000043.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.guided.36, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNRUY010000022.1 Salmonella enterica strain PNUSAS390277 SAMN37771085-rid19676163.denovo.24, whole genome shotgun sequence	8409..8659																																																						avrA	ABNRUY010000002.1	174209..175078	99.77	870	0						
GCA_032612755.1_PDT001924914.1_genomic.fna	Salmonella_enterica	0.5211	389.151 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNRUX010000001.1 Salmonella enterica strain PNUSAS390273 SAMN37771080-rid19677613.denovo.01, whole genome shotgun sequence	497689..498126	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNRUX010000023.1 Salmonella enterica strain PNUSAS390273 SAMN37771080-rid19677613.guided.18, whole genome shotgun sequence	1466..1903	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032612775.1_PDT001924913.1_genomic.fna	Salmonella_enterica	0.5221	325.406 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNRUZ010000003.1 Salmonella enterica strain PNUSAS390269 SAMN37771081-rid19679873.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNRUZ010000044.1 Salmonella enterica strain PNUSAS390269 SAMN37771081-rid19679873.guided.27, whole genome shotgun sequence	8980..9417	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNRUZ010000015.1 Salmonella enterica strain PNUSAS390269 SAMN37771081-rid19679873.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNRUZ010000015.1 Salmonella enterica strain PNUSAS390269 SAMN37771081-rid19679873.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNRUZ010000001.1	401490..402358	100	869	0						
GCA_032612795.1_PDT001924919.1_genomic.fna	Salmonella_enterica	0.5212	438.833 KB	5	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncFII(29)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNRUT010000003.1 Salmonella enterica strain PNUSAS390287 SAMN37771118-rid19677633.denovo.03, whole genome shotgun sequence	145341..145778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNRUT010000052.1 Salmonella enterica strain PNUSAS390287 SAMN37771118-rid19677633.guided.27, whole genome shotgun sequence	172..609	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABNRUT010000006.1 Salmonella enterica strain PNUSAS390287 SAMN37771118-rid19677633.denovo.06, whole genome shotgun sequence	180900..181322	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNRUT010000051.1 Salmonella enterica strain PNUSAS390287 SAMN37771118-rid19677633.guided.24, whole genome shotgun sequence	10636..11058	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(29)	100	259 / 259	ABNRUT010000018.1 Salmonella enterica strain PNUSAS390287 SAMN37771118-rid19677633.denovo.19, whole genome shotgun sequence	9688..9946																																																						avrA	ABNRUT010000002.1	564065..564934	99.54	870	0						
GCA_032612815.1_PDT001924912.1_genomic.fna	Salmonella_enterica	0.5215	237.228 KB	7	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNRVA010000008.1 Salmonella enterica strain PNUSAS390266 SAMN37771086-rid19678983.denovo.08, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNRVA010000047.1 Salmonella enterica strain PNUSAS390266 SAMN37771086-rid19678983.guided.32, whole genome shotgun sequence	5701..6138	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRVA010000001.1	178833..179701	99.31	870	0						
GCA_032612835.1_PDT001924911.1_genomic.fna	Salmonella_enterica	0.5225	250.445 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNRVB010000004.1 Salmonella enterica strain PNUSAS390275 SAMN37771087-rid19677603.denovo.04, whole genome shotgun sequence	149919..150356	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNRVB010000041.1 Salmonella enterica strain PNUSAS390275 SAMN37771087-rid19677603.guided.28, whole genome shotgun sequence	4611..5048	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRVB010000001.1	406257..407125	99.425	870	0						
GCA_032612855.1_PDT001924910.1_genomic.fna	Salmonella_enterica	0.5211	414.495 KB	4	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNRVC010000001.1 Salmonella enterica strain PNUSAS390270 SAMN37771079-rid19676153.denovo.01, whole genome shotgun sequence	500874..501311	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNRVC010000023.1 Salmonella enterica strain PNUSAS390270 SAMN37771079-rid19676153.guided.18, whole genome shotgun sequence	8793..9230	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRVC010000002.1	182071..182940	98.966	870	0						
GCA_032612915.1_PDT001924908.1_genomic.fna	Salmonella_enterica	0.5217	228.055 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col(pHAD28),IncB/O/K/Z,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNRVE010000001.1 Salmonella enterica strain PNUSAS390129 SAMN37771051-rid19680583.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNRVE010000060.1 Salmonella enterica strain PNUSAS390129 SAMN37771051-rid19680583.guided.36, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNRVE010000039.1 Salmonella enterica strain PNUSAS390129 SAMN37771051-rid19680583.denovo.42, whole genome shotgun sequence	1251..1381	enterobacteriales	IncB/O/K/Z	96.69	151 / 151	ABNRVE010000019.1 Salmonella enterica strain PNUSAS390129 SAMN37771051-rid19680583.denovo.19, whole genome shotgun sequence	44766..44916		enterobacteriales	IncFIB(S)	100	643 / 643	ABNRVE010000025.1 Salmonella enterica strain PNUSAS390129 SAMN37771051-rid19680583.denovo.25, whole genome shotgun sequence	44772..45414		enterobacteriales	IncFII(S)	100	262 / 262	ABNRVE010000025.1 Salmonella enterica strain PNUSAS390129 SAMN37771051-rid19680583.denovo.25, whole genome shotgun sequence	29426..29687																																		avrA	ABNRVE010000006.1	97953..98821	100	869	0						
GCA_032612975.1_PDT001924905.1_genomic.fna	Salmonella_enterica	0.5219	509.596 KB	2	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNRVH010000001.1 Salmonella enterica strain PNUSAS390196 SAMN37771036-rid19676143.denovo.01, whole genome shotgun sequence	731533..731970	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNRVH010000023.1 Salmonella enterica strain PNUSAS390196 SAMN37771036-rid19676143.guided.14, whole genome shotgun sequence	1449..1886	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRVH010000003.1	149431..150300	99.425	870	0						
GCA_032613015.1_PDT001924903.1_genomic.fna	Salmonella_enterica	0.5215	421.791 KB	4	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNRVK010000001.1 Salmonella enterica strain PNUSAS389785 SAMN37769735-rid19679863.denovo.01, whole genome shotgun sequence	346837..347274	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNRVK010000028.1 Salmonella enterica strain PNUSAS389785 SAMN37769735-rid19679863.guided.18, whole genome shotgun sequence	11360..11797	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRVK010000007.1	154446..155315	99.54	870	0						
GCA_032613055.1_PDT001924901.1_genomic.fna	Salmonella_enterica	0.5214	363.638 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRVL010000001.1 Salmonella enterica strain PNUSAS390272 SAMN37771084-rid19677563.denovo.01, whole genome shotgun sequence	561490..561927	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRVL010000034.1 Salmonella enterica strain PNUSAS390272 SAMN37771084-rid19677563.guided.20, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRVL010000010.1	121409..122277	99.195	870	0						
GCA_032613095.1_PDT001924898.1_genomic.fna	Salmonella_enterica	0.5212	550.787 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNRVP010000001.1 Salmonella enterica strain PNUSAS390125 SAMN37771048-rid19680573.denovo.01, whole genome shotgun sequence	456548..456985	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNRVP010000019.1 Salmonella enterica strain PNUSAS390125 SAMN37771048-rid19680573.guided.16, whole genome shotgun sequence	20579..21016	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRVP010000003.1	149711..150580	99.425	870	0						
GCA_032613135.1_PDT001924896.1_genomic.fna	Salmonella_enterica	0.5215	532.15 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNRVQ010000001.1 Salmonella enterica strain PNUSAS390271 SAMN37771076-rid19680563.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNRVQ010000024.1 Salmonella enterica strain PNUSAS390271 SAMN37771076-rid19680563.guided.16, whole genome shotgun sequence	10317..10754	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRVQ010000002.1	138354..139223	98.966	870	0						
GCA_032613215.1_PDT001924894.1_genomic.fna	Salmonella_enterica	0.5182	308.178 KB	6	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNRVS010000001.1 Salmonella enterica strain PNUSAS390274 SAMN37771075-rid19677543.denovo.01, whole genome shotgun sequence	777326..777763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNRVS010000082.1 Salmonella enterica strain PNUSAS390274 SAMN37771075-rid19677543.guided.27, whole genome shotgun sequence	4935..5372	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRVS010000002.1	457592..458461	99.425	870	0						
GCA_032613255.1_PDT001924890.1_genomic.fna	Salmonella_enterica	0.5225	761.796 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRVY010000001.1 Salmonella enterica strain PNUSAS389806 SAMN37769513-rid19676113.denovo.01, whole genome shotgun sequence	482110..482547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNRVY010000020.1 Salmonella enterica strain PNUSAS389806 SAMN37769513-rid19676113.guided.16, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNRVY010000005.1	151330..152199	99.77	870	0						
GCA_032613295.1_PDT001924891.1_genomic.fna	Salmonella_enterica	0.5212	407.561 KB	5	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRVV010000008.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.denovo.08, whole genome shotgun sequence	145366..145803	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNRVV010000025.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.denovo.28, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNRVV010000039.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.guided.35, whole genome shotgun sequence	618..1055	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNRVV010000040.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.guided.37, whole genome shotgun sequence	1013..1792	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNRVV010000025.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.denovo.28, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNRVV010000040.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.guided.37, whole genome shotgun sequence	17..883	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNRVV010000020.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.denovo.20, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNRVV010000035.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.guided.27, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNRVV010000020.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.denovo.20, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNRVV010000036.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.guided.30, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNRVV010000025.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.denovo.28, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNRVV010000038.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.guided.34, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNRVV010000020.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.denovo.20, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNRVV010000041.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.guided.38, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNRVV010000020.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.denovo.20, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNRVV010000037.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.guided.32, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNRVV010000020.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.denovo.20, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNRVV010000037.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.guided.32, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNRVV010000021.1 Salmonella enterica strain PNUSAS390265 SAMN37771078-rid19679843.denovo.21, whole genome shotgun sequence	8402..8652																																																						avrA	ABNRVV010000001.1	553191..554060	99.77	870	0						
GCA_032613375.1_PDT001924885.1_genomic.fna	Salmonella_enterica	0.5222	682.47 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRWB010000001.1 Salmonella enterica strain PNUSAS389805 SAMN37769506-rid19676103.denovo.01, whole genome shotgun sequence	651291..651728	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNRWB010000018.1 Salmonella enterica strain PNUSAS389805 SAMN37769506-rid19676103.guided.14, whole genome shotgun sequence	12125..12562	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRWB010000002.1	561272..562142	99.656	871	0						
GCA_032613415.1_PDT001924884.1_genomic.fna	Salmonella_enterica	0.522	761.787 KB	2	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRWC010000001.1 Salmonella enterica strain PNUSAS390193 SAMN37771039-rid19676093.denovo.01, whole genome shotgun sequence	1371144..1371581	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNRWC010000018.1 Salmonella enterica strain PNUSAS390193 SAMN37771039-rid19676093.guided.14, whole genome shotgun sequence	9900..10337	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNRWC010000004.1	151320..152189	99.77	870	0						
GCA_032613515.1_PDT001924879.1_genomic.fna	Salmonella_enterica	0.5213	377.05 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNRWI010000004.1 Salmonella enterica strain PNUSAS389789 SAMN37769519-rid19677513.denovo.04, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNRWI010000044.1 Salmonella enterica strain PNUSAS389789 SAMN37769519-rid19677513.guided.28, whole genome shotgun sequence	10693..11130	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNRWI010000015.1 Salmonella enterica strain PNUSAS389789 SAMN37769519-rid19677513.denovo.15, whole genome shotgun sequence	48453..49095	enterobacteriales	IncFII(S)	100	262 / 262	ABNRWI010000015.1 Salmonella enterica strain PNUSAS389789 SAMN37769519-rid19677513.denovo.15, whole genome shotgun sequence	64179..64440																																																avrA	ABNRWI010000001.1	484836..485704	100	869	0						
GCA_032613535.1_PDT001924877.1_genomic.fna	Salmonella_enterica	0.5213	430.194 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRWK010000001.1 Salmonella enterica strain PNUSAS390190 SAMN37771042-rid19678923.denovo.01, whole genome shotgun sequence	563827..564264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRWK010000030.1 Salmonella enterica strain PNUSAS390190 SAMN37771042-rid19678923.guided.20, whole genome shotgun sequence	4933..5370	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRWK010000009.1	140075..140943	99.195	870	0						
GCA_032613575.1_PDT001924874.1_genomic.fna	Salmonella_enterica	0.5203	692.07 KB	3	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,ColpVC,ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNRWL010000001.1 Salmonella enterica strain PNUSAS390205 SAMN37771055-rid19677503.denovo.01, whole genome shotgun sequence	1376000..1376437	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNRWL010000026.1 Salmonella enterica strain PNUSAS390205 SAMN37771055-rid19677503.guided.15, whole genome shotgun sequence	3668..4105	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.86	114 / 114	ABNRWL010000014.1 Salmonella enterica strain PNUSAS390205 SAMN37771055-rid19677503.denovo.17, whole genome shotgun sequence	2734..2847	enterobacteriales	ColpVC	96.89	193 / 193	ABNRWL010000017.1 Salmonella enterica strain PNUSAS390205 SAMN37771055-rid19677503.denovo.20, whole genome shotgun sequence	1524..1716		enterobacteriales	ColpVC	98.96	193 / 193	ABNRWL010000018.1 Salmonella enterica strain PNUSAS390205 SAMN37771055-rid19677503.denovo.21, whole genome shotgun sequence	804..996		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNRWL010000011.1 Salmonella enterica strain PNUSAS390205 SAMN37771055-rid19677503.denovo.11, whole genome shotgun sequence	67749..67890																																		avrA	ABNRWL010000002.1	600762..601631	99.425	870	0						
GCA_032613595.1_PDT001924873.1_genomic.fna	Salmonella_enterica	0.5224	876.212 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRWM010000001.1 Salmonella enterica strain PNUSAS389793 SAMN37769507-rid19680513.denovo.01, whole genome shotgun sequence	473686..474123	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNRWM010000023.1 Salmonella enterica strain PNUSAS389793 SAMN37769507-rid19680513.guided.18, whole genome shotgun sequence	3972..4409	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNRWM010000005.1	151330..152199	99.77	870	0						
GCA_032613615.1_PDT001924871.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRWO010000001.1 Salmonella enterica strain PNUSAS390202 SAMN37771058-rid19680503.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRWO010000023.1 Salmonella enterica strain PNUSAS390202 SAMN37771058-rid19680503.guided.13, whole genome shotgun sequence	21989..22426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRWO010000012.1 Salmonella enterica strain PNUSAS390202 SAMN37771058-rid19680503.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNRWO010000012.1 Salmonella enterica strain PNUSAS390202 SAMN37771058-rid19680503.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABNRWO010000002.1	553636..554505	99.54	870	0						
GCA_032613635.1_PDT001924872.1_genomic.fna	Salmonella_enterica	0.5198	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNRWN010000010.1 Salmonella enterica strain PNUSAS389802 SAMN37769542-rid19677493.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNRWN010000057.1 Salmonella enterica strain PNUSAS389802 SAMN37769542-rid19677493.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032613655.1_PDT001924870.1_genomic.fna	Salmonella_enterica	0.5228	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNRWP010000001.1 Salmonella enterica strain PNUSAS389800 SAMN37769510-rid19675283.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNRWP010000033.1 Salmonella enterica strain PNUSAS389800 SAMN37769510-rid19675283.guided.23, whole genome shotgun sequence	7317..7754	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRWP010000002.1	179417..180286	99.655	870	0						
GCA_032613735.1_PDT001924866.1_genomic.fna	Salmonella_enterica	0.521	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRWU010000001.1 Salmonella enterica strain PNUSAS390187 SAMN37771045-rid19679813.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRWU010000023.1 Salmonella enterica strain PNUSAS390187 SAMN37771045-rid19679813.guided.13, whole genome shotgun sequence	17509..17946	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRWU010000012.1 Salmonella enterica strain PNUSAS390187 SAMN37771045-rid19679813.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNRWU010000015.1 Salmonella enterica strain PNUSAS390187 SAMN37771045-rid19679813.denovo.18, whole genome shotgun sequence	3403..3664																																																avrA	ABNRWU010000002.1	553636..554505	99.54	870	0						
GCA_032613755.1_PDT001924865.1_genomic.fna	Salmonella_enterica	0.5196	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	7	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-15,blaTEM-1B,blaCTX-M-15,blaTEM-1B,catA1,catA1,qnrS1,qnrS1,sul1,sul1,dfrA7,dfrA7	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNRWT010000011.1 Salmonella enterica strain PNUSAS389811 SAMN37769516-rid19676063.denovo.11, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNRWT010000058.1 Salmonella enterica strain PNUSAS389811 SAMN37769516-rid19676063.guided.33, whole genome shotgun sequence	8093..8527	Amikacin, Tobramycin	NC_003197	blaCTX-M-15	100	876/876	ABNRWT010000038.1 Salmonella enterica strain PNUSAS389811 SAMN37769516-rid19676063.denovo.41, whole genome shotgun sequence	14193..15068	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	ABNRWT010000038.1 Salmonella enterica strain PNUSAS389811 SAMN37769516-rid19676063.denovo.41, whole genome shotgun sequence	17890..18750	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-15	100	876/876	ABNRWT010000060.1 Salmonella enterica strain PNUSAS389811 SAMN37769516-rid19676063.guided.43, whole genome shotgun sequence	4254..5129	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	ABNRWT010000060.1 Salmonella enterica strain PNUSAS389811 SAMN37769516-rid19676063.guided.43, whole genome shotgun sequence	572..1432	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	ABNRWT010000040.1 Salmonella enterica strain PNUSAS389811 SAMN37769516-rid19676063.denovo.44, whole genome shotgun sequence	8088..8747	Chloramphenicol	V00622	catA1	99.85	660/660	ABNRWT010000062.1 Salmonella enterica strain PNUSAS389811 SAMN37769516-rid19676063.guided.55, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	qnrS1	100	657/657	ABNRWT010000038.1 Salmonella enterica strain PNUSAS389811 SAMN37769516-rid19676063.denovo.41, whole genome shotgun sequence	8896..9552	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNRWT010000060.1 Salmonella enterica strain PNUSAS389811 SAMN37769516-rid19676063.guided.43, whole genome shotgun sequence	9770..10426	Ciprofloxacin	AB187515	sul1	100	840/840	ABNRWT010000040.1 Salmonella enterica strain PNUSAS389811 SAMN37769516-rid19676063.denovo.44, whole genome shotgun sequence	181..1020	Sulfamethoxazole	U12338	sul1	100	840/840	ABNRWT010000061.1 Salmonella enterica strain PNUSAS389811 SAMN37769516-rid19676063.guided.48, whole genome shotgun sequence	4845..5684	Sulfamethoxazole	U12338	dfrA7	100	474/474	ABNRWT010000040.1 Salmonella enterica strain PNUSAS389811 SAMN37769516-rid19676063.denovo.44, whole genome shotgun sequence	1591..2064	Trimethoprim	AB161450	dfrA7	100	474/474	ABNRWT010000061.1 Salmonella enterica strain PNUSAS389811 SAMN37769516-rid19676063.guided.48, whole genome shotgun sequence	3801..4274	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																																						gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032613815.1_PDT001924863.1_genomic.fna	Salmonella_enterica	0.5218	561.208 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNRWV010000001.1 Salmonella enterica strain PNUSAS390199 SAMN37771033-rid19676053.denovo.01, whole genome shotgun sequence	834673..835110	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNRWV010000026.1 Salmonella enterica strain PNUSAS390199 SAMN37771033-rid19676053.guided.15, whole genome shotgun sequence	19003..19440	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNRWV010000018.1 Salmonella enterica strain PNUSAS390199 SAMN37771033-rid19676053.denovo.21, whole genome shotgun sequence	1506..1636	enterobacteriales	Col440I	90.27	113 / 114	ABNRWV010000016.1 Salmonella enterica strain PNUSAS390199 SAMN37771033-rid19676053.denovo.19, whole genome shotgun sequence	3345..3457																																																avrA	ABNRWV010000002.1	563627..564496	99.77	870	0						
GCA_032613835.1_PDT001924861.1_genomic.fna	Salmonella_enterica	0.5221	590.714 KB	4	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRWX010000003.1 Salmonella enterica strain PNUSAS389778 SAMN37769545-rid19680493.denovo.03, whole genome shotgun sequence	145449..145886	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNRWX010000018.1 Salmonella enterica strain PNUSAS389778 SAMN37769545-rid19680493.guided.13, whole genome shotgun sequence	27573..28010	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNRWX010000002.1	553745..554614	99.77	870	0						
GCA_032613855.1_PDT001924859.1_genomic.fna	Salmonella_enterica	0.522	85.387 KB	16	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNRWZ010000016.1 Salmonella enterica strain PNUSAS390047 SAMN37769952-rid19677453.denovo.16, whole genome shotgun sequence	64093..64530	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNRWZ010000098.1 Salmonella enterica strain PNUSAS390047 SAMN37769952-rid19677453.guided.72, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRWZ010000008.1	2250..3119	99.54	870	0						
GCA_032613875.1_PDT001924856.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRXB010000001.1 Salmonella enterica strain PNUSAS390203 SAMN37771057-rid19679803.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRXB010000024.1 Salmonella enterica strain PNUSAS390203 SAMN37771057-rid19679803.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRXB010000012.1 Salmonella enterica strain PNUSAS390203 SAMN37771057-rid19679803.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNRXB010000012.1 Salmonella enterica strain PNUSAS390203 SAMN37771057-rid19679803.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNRXB010000002.1	553636..554505	99.54	870	0						
GCA_032613955.1_PDT001924853.1_genomic.fna	Salmonella_enterica	0.5218	371.924 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNRXE010000001.1 Salmonella enterica strain PNUSAS389807 SAMN37769548-rid19676013.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNRXE010000039.1 Salmonella enterica strain PNUSAS389807 SAMN37769548-rid19676013.guided.21, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRXE010000008.1	140114..140983	99.425	870	0						
GCA_032614035.1_PDT001924849.1_genomic.fna	Salmonella_enterica	0.5226	87.35 KB	20	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRXI010000027.1 Salmonella enterica strain PNUSAS390052 SAMN37769949-rid19677433.denovo.027, whole genome shotgun sequence	15476..15913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNRXI010000099.1 Salmonella enterica strain PNUSAS390052 SAMN37769949-rid19677433.guided.062, whole genome shotgun sequence	13037..13474	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRXI010000009.1	83891..84759	99.655	870	0						
GCA_032614075.1_PDT001924847.1_genomic.fna	Salmonella_enterica	0.5221	876.027 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRXK010000001.1 Salmonella enterica strain PNUSAS390206 SAMN37771054-rid19678873.denovo.01, whole genome shotgun sequence	343265..343702	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNRXK010000017.1 Salmonella enterica strain PNUSAS390206 SAMN37771054-rid19678873.guided.12, whole genome shotgun sequence	22071..22508	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNRXK010000005.1	151323..152192	99.77	870	0						
GCA_032614095.1_PDT001924846.1_genomic.fna	Salmonella_enterica	0.5212	489.878 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRXL010000001.1 Salmonella enterica strain PNUSAS390204 SAMN37771056-rid19679793.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRXL010000024.1 Salmonella enterica strain PNUSAS390204 SAMN37771056-rid19679793.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRXL010000012.1 Salmonella enterica strain PNUSAS390204 SAMN37771056-rid19679793.denovo.14, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNRXL010000012.1 Salmonella enterica strain PNUSAS390204 SAMN37771056-rid19679793.denovo.14, whole genome shotgun sequence	53092..53353																																																avrA	ABNRXL010000002.1	553636..554505	99.54	870	0						
GCA_032614115.1_PDT001924844.1_genomic.fna	Salmonella_enterica	0.5212	381.885 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNRXN010000001.1 Salmonella enterica strain PNUSAS390131 SAMN37771052-rid19677423.denovo.01, whole genome shotgun sequence	82299..82736	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNRXN010000037.1 Salmonella enterica strain PNUSAS390131 SAMN37771052-rid19677423.guided.22, whole genome shotgun sequence	20081..20518	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.91	132 / 131	ABNRXN010000022.1 Salmonella enterica strain PNUSAS390131 SAMN37771052-rid19677423.denovo.26, whole genome shotgun sequence	5384..5514	enterobacteriales	Col440I	94.74	114 / 114	ABNRXN010000023.1 Salmonella enterica strain PNUSAS390131 SAMN37771052-rid19677423.denovo.27, whole genome shotgun sequence	2725..2838																																																avrA	ABNRXN010000006.1	183135..184004	98.966	870	0						
GCA_032614135.1_PDT001924840.1_genomic.fna	Salmonella_enterica	0.5211	332.24 KB	5	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNRXO010000001.1 Salmonella enterica strain PNUSAS390126 SAMN37771049-rid19675963.denovo.01, whole genome shotgun sequence	482598..483035	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNRXO010000044.1 Salmonella enterica strain PNUSAS390126 SAMN37771049-rid19675963.guided.24, whole genome shotgun sequence	18145..18582	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNRXO010000023.1 Salmonella enterica strain PNUSAS390126 SAMN37771049-rid19675963.denovo.23, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNRXO010000023.1 Salmonella enterica strain PNUSAS390126 SAMN37771049-rid19675963.denovo.23, whole genome shotgun sequence	9325..9586																																																avrA	ABNRXO010000004.1	174642..175511	99.885	870	0						
GCA_032614185.1_PDT001924845.1_genomic.fna	Salmonella_enterica	0.5211	331.959 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNRXM010000001.1 Salmonella enterica strain PNUSAS390130 SAMN37771053-rid19675983.denovo.01, whole genome shotgun sequence	799738..800175	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNRXM010000039.1 Salmonella enterica strain PNUSAS390130 SAMN37771053-rid19675983.guided.19, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.91	132 / 131	ABNRXM010000023.1 Salmonella enterica strain PNUSAS390130 SAMN37771053-rid19675983.denovo.26, whole genome shotgun sequence	5384..5514	enterobacteriales	Col440I	94.74	114 / 114	ABNRXM010000024.1 Salmonella enterica strain PNUSAS390130 SAMN37771053-rid19675983.denovo.27, whole genome shotgun sequence	2725..2838																																																avrA	ABNRXM010000003.1	183135..184004	98.966	870	0						
GCA_032614215.1_PDT001924838.1_genomic.fna	Salmonella_enterica	0.5214	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRXQ010000001.1 Salmonella enterica strain PNUSAS390128 SAMN37771063-rid19675953.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRXQ010000026.1 Salmonella enterica strain PNUSAS390128 SAMN37771063-rid19675953.guided.17, whole genome shotgun sequence	8882..9319	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRXQ010000017.1 Salmonella enterica strain PNUSAS390128 SAMN37771063-rid19675953.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNRXQ010000014.1 Salmonella enterica strain PNUSAS390128 SAMN37771063-rid19675953.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNRXQ010000002.1	553636..554505	99.54	870	0						
GCA_032614255.1_PDT001924836.1_genomic.fna	Salmonella_enterica	0.5217	443.911 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNRXR010000001.1 Salmonella enterica strain PNUSAS390127 SAMN37771050-rid19679783.denovo.01, whole genome shotgun sequence	683863..684300	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNRXR010000029.1 Salmonella enterica strain PNUSAS390127 SAMN37771050-rid19679783.guided.19, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNRXR010000022.1 Salmonella enterica strain PNUSAS390127 SAMN37771050-rid19679783.denovo.25, whole genome shotgun sequence	1708..1838																																																						avrA	ABNRXR010000002.1	563803..564672	99.77	870	0						
GCA_032614275.1_PDT001924833.1_genomic.fna	Salmonella_enterica	0.5215	466.7 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRXT010000001.1 Salmonella enterica strain PNUSAS390194 SAMN37771038-rid19675943.denovo.01, whole genome shotgun sequence	674296..674733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRXT010000022.1 Salmonella enterica strain PNUSAS390194 SAMN37771038-rid19675943.guided.14, whole genome shotgun sequence	16339..16776	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRXT010000009.1	150695..151565	99.196	871	0						
GCA_032614295.1_PDT001924831.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRXV010000001.1 Salmonella enterica strain PNUSAS390186 SAMN37771046-rid19680463.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRXV010000023.1 Salmonella enterica strain PNUSAS390186 SAMN37771046-rid19680463.guided.15, whole genome shotgun sequence	2881..3318	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRXV010000012.1 Salmonella enterica strain PNUSAS390186 SAMN37771046-rid19680463.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNRXV010000016.1 Salmonella enterica strain PNUSAS390186 SAMN37771046-rid19680463.denovo.19, whole genome shotgun sequence	3419..3680																																																avrA	ABNRXV010000002.1	553636..554505	99.54	870	0						
GCA_032614315.1_PDT001924832.1_genomic.fna	Salmonella_enterica	0.5222	762.446 KB	2	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRXU010000001.1 Salmonella enterica strain PNUSAS390185 SAMN37771047-rid19678833.denovo.01, whole genome shotgun sequence	1363924..1364361	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNRXU010000015.1 Salmonella enterica strain PNUSAS390185 SAMN37771047-rid19678833.guided.10, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNRXU010000003.1	567260..568129	99.77	870	0						
GCA_032614335.1_PDT001924830.1_genomic.fna	Salmonella_enterica	0.5209	490.139 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRXX010000001.1 Salmonella enterica strain PNUSAS390197 SAMN37771035-rid19678823.denovo.01, whole genome shotgun sequence	733874..734311	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRXX010000022.1 Salmonella enterica strain PNUSAS390197 SAMN37771035-rid19678823.guided.15, whole genome shotgun sequence	6104..6541	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRXX010000012.1 Salmonella enterica strain PNUSAS390197 SAMN37771035-rid19678823.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNRXX010000012.1 Salmonella enterica strain PNUSAS390197 SAMN37771035-rid19678823.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNRXX010000002.1	585418..586287	99.54	870	0						
GCA_032614355.1_PDT001924828.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRXY010000001.1 Salmonella enterica strain PNUSAS390198 SAMN37771034-rid19675933.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRXY010000022.1 Salmonella enterica strain PNUSAS390198 SAMN37771034-rid19675933.guided.14, whole genome shotgun sequence	4229..4666	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRXY010000012.1 Salmonella enterica strain PNUSAS390198 SAMN37771034-rid19675933.denovo.13, whole genome shotgun sequence	50251..50893	enterobacteriales	IncFII(S)	100	262 / 262	ABNRXY010000012.1 Salmonella enterica strain PNUSAS390198 SAMN37771034-rid19675933.denovo.13, whole genome shotgun sequence	5998..6259																																																avrA	ABNRXY010000002.1	553636..554505	99.54	870	0						
GCA_032614375.1_PDT001924827.1_genomic.fna	Salmonella_enterica	0.5203	391.749 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRXZ010000001.1 Salmonella enterica strain PNUSAS390189 SAMN37771043-rid19678813.denovo.01, whole genome shotgun sequence	563827..564264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRXZ010000031.1 Salmonella enterica strain PNUSAS390189 SAMN37771043-rid19678813.guided.22, whole genome shotgun sequence	10842..11279	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRXZ010000010.1	140193..141061	99.195	870	0						
GCA_032614395.1_PDT001924829.1_genomic.fna	Salmonella_enterica	0.5218	410.978 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNRXW010000001.1 Salmonella enterica strain PNUSAS390191 SAMN37771041-rid19677393.denovo.01, whole genome shotgun sequence	835148..835585	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNRXW010000027.1 Salmonella enterica strain PNUSAS390191 SAMN37771041-rid19677393.guided.19, whole genome shotgun sequence	5134..5571	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRXW010000003.1	130571..131440	99.77	870	0						
GCA_032614415.1_PDT001924826.1_genomic.fna	Salmonella_enterica	0.5217	656.355 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRYA010000001.1 Salmonella enterica strain PNUSAS390192 SAMN37771040-rid19679773.denovo.01, whole genome shotgun sequence	674286..674723	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRYA010000021.1 Salmonella enterica strain PNUSAS390192 SAMN37771040-rid19679773.guided.15, whole genome shotgun sequence	3492..3929	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRYA010000003.1	504791..505661	99.196	871	0						
GCA_032614475.1_PDT001924823.1_genomic.fna	Salmonella_enterica	0.5191	707.807 KB	2	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNRYD010000001.1 Salmonella enterica strain PNUSAS390200 SAMN37771032-rid19675923.denovo.01, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNRYD010000023.1 Salmonella enterica strain PNUSAS390200 SAMN37771032-rid19675923.guided.12, whole genome shotgun sequence	14814..15251	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	100	316 / 316	ABNRYD010000009.1 Salmonella enterica strain PNUSAS390200 SAMN37771032-rid19675923.denovo.09, whole genome shotgun sequence	27860..28175																																																																	
GCA_032614495.1_PDT001924824.1_genomic.fna	Salmonella_enterica	0.5219	249.452 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNRYC010000001.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNRYC010000023.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.denovo.25, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNRYC010000023.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.denovo.25, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNRYC010000033.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.denovo.39, whole genome shotgun sequence	1053..2078	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNRYC010000033.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.denovo.39, whole genome shotgun sequence	48..824	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNRYC010000047.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.guided.28, whole genome shotgun sequence	21912..22349	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNRYC010000048.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.guided.30, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNRYC010000048.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.guided.30, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNRYC010000050.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.guided.38, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNRYC010000050.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.guided.38, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNRYC010000035.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.denovo.42, whole genome shotgun sequence	901..1776	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNRYC010000051.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.guided.40, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNRYC010000036.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.denovo.44, whole genome shotgun sequence	320..736	Fosfomycin	AB522970	fosA3	100	417/417	ABNRYC010000052.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.guided.43, whole genome shotgun sequence	361..777	Fosfomycin	AB522970	floR	98.19	1214/1215	ABNRYC010000031.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.denovo.36, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNRYC010000049.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.guided.35, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNRYC010000023.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.denovo.25, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNRYC010000048.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.guided.30, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNRYC010000023.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.denovo.25, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNRYC010000048.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.guided.30, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNRYC010000026.1 Salmonella enterica strain PNUSAS390195 SAMN37771037-rid19677383.denovo.29, whole genome shotgun sequence	9109..9668																																																						avrA	ABNRYC010000002.1	149828..150697	99.655	870	0						
GCA_032614525.1_PDT001924825.1_genomic.fna	Salmonella_enterica	0.5221	642.391 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRYB010000001.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.denovo.01, whole genome shotgun sequence	150017..150454	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNRYB010000023.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.denovo.27, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNRYB010000038.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.guided.20, whole genome shotgun sequence	3604..4041	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNRYB010000039.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.guided.26, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNRYB010000023.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.denovo.27, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNRYB010000039.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.guided.26, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNRYB010000021.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.denovo.24, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNRYB010000044.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.guided.37, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNRYB010000020.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.denovo.23, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNRYB010000040.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.guided.31, whole genome shotgun sequence	700..1913	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNRYB010000023.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.denovo.27, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNRYB010000039.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.guided.26, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNRYB010000027.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.denovo.35, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNRYB010000043.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.guided.34, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNRYB010000020.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.denovo.23, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNRYB010000041.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.guided.32, whole genome shotgun sequence	857..2131	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNRYB010000020.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.denovo.23, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNRYB010000042.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.guided.33, whole genome shotgun sequence	240..713	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNRYB010000017.1 Salmonella enterica strain PNUSAS390188 SAMN37771044-rid19678803.denovo.19, whole genome shotgun sequence	4434..4684																																																						avrA	ABNRYB010000002.1	586525..587394	99.77	870	0						
GCA_032614555.1_PDT001924822.1_genomic.fna	Salmonella_enterica	0.5202	490.115 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRYE010000001.1 Salmonella enterica strain PNUSAS390201 SAMN37771031-rid19678793.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRYE010000026.1 Salmonella enterica strain PNUSAS390201 SAMN37771031-rid19678793.guided.14, whole genome shotgun sequence	2425..2862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRYE010000012.1 Salmonella enterica strain PNUSAS390201 SAMN37771031-rid19678793.denovo.13, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNRYE010000016.1 Salmonella enterica strain PNUSAS390201 SAMN37771031-rid19678793.denovo.19, whole genome shotgun sequence	3404..3665		enterobacteriales	IncX1	98.93	374 / 374	ABNRYE010000013.1 Salmonella enterica strain PNUSAS390201 SAMN37771031-rid19678793.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNRYE010000002.1	553693..554562	99.54	870	0						
GCA_032614835.1_PDT001924808.1_genomic.fna	Salmonella_enterica	0.5226	139.121 KB	9	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	-:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:l,v:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNRYS010000002.1 Salmonella enterica strain PNUSAS390046 SAMN37769934-rid19675893.denovo.02, whole genome shotgun sequence	377048..377485	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNRYS010000070.1 Salmonella enterica strain PNUSAS390046 SAMN37769934-rid19675893.guided.52, whole genome shotgun sequence	2189..2626	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032614875.1_PDT001924804.1_genomic.fna	Salmonella_enterica	0.5218	67.996 KB	23	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNRYV010000025.1 Salmonella enterica strain PNUSAS390051 SAMN37769954-rid19677323.denovo.025, whole genome shotgun sequence	12528..12965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNRYV010000122.1 Salmonella enterica strain PNUSAS390051 SAMN37769954-rid19677323.guided.087, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRYV010000006.1	81528..82397	99.425	870	0						
GCA_032614955.1_PDT001924793.1_genomic.fna	Salmonella_enterica	0.5229	78.249 KB	21	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNRYY010000027.1 Salmonella enterica strain PNUSAS390048 SAMN37769951-rid19675273.denovo.027, whole genome shotgun sequence	52330..52767	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNRYY010000108.1 Salmonella enterica strain PNUSAS390048 SAMN37769951-rid19675273.guided.070, whole genome shotgun sequence	15968..16405	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNRYY010000007.1	43270..44139	99.77	870	0						
GCA_032614975.1_PDT001924788.1_genomic.fna	Salmonella_enterica	0.5217	377.048 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNRZB010000002.1 Salmonella enterica strain PNUSAS389788 SAMN37769489-rid19675833.denovo.02, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNRZB010000042.1 Salmonella enterica strain PNUSAS389788 SAMN37769489-rid19675833.guided.30, whole genome shotgun sequence	4465..4902	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNRZB010000014.1 Salmonella enterica strain PNUSAS389788 SAMN37769489-rid19675833.denovo.14, whole genome shotgun sequence	48421..49063	enterobacteriales	IncFII(S)	100	262 / 262	ABNRZB010000014.1 Salmonella enterica strain PNUSAS389788 SAMN37769489-rid19675833.denovo.14, whole genome shotgun sequence	64148..64409																																																avrA	ABNRZB010000001.1	452029..452895	99.54	870	0						
GCA_032615075.1_PDT001924783.1_genomic.fna	Salmonella_enterica	0.5221	74.165 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNRZC010000005.1 Salmonella enterica strain PNUSAS390050 SAMN37769953-rid19675823.denovo.005, whole genome shotgun sequence	12526..12963	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNRZC010000026.1 Salmonella enterica strain PNUSAS390050 SAMN37769953-rid19675823.denovo.026, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNRZC010000123.1 Salmonella enterica strain PNUSAS390050 SAMN37769953-rid19675823.guided.038, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNRZC010000129.1 Salmonella enterica strain PNUSAS390050 SAMN37769953-rid19675823.guided.115, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNRZC010000084.1 Salmonella enterica strain PNUSAS390050 SAMN37769953-rid19675823.denovo.087, whole genome shotgun sequence	1066..1932	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNRZC010000128.1 Salmonella enterica strain PNUSAS390050 SAMN37769953-rid19675823.guided.110, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNRZC010000084.1 Salmonella enterica strain PNUSAS390050 SAMN37769953-rid19675823.denovo.087, whole genome shotgun sequence	7566..8780	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNRZC010000126.1 Salmonella enterica strain PNUSAS390050 SAMN37769953-rid19675823.guided.096, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNRZC010000127.1 Salmonella enterica strain PNUSAS390050 SAMN37769953-rid19675823.guided.106, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNRZC010000084.1 Salmonella enterica strain PNUSAS390050 SAMN37769953-rid19675823.denovo.087, whole genome shotgun sequence	5454..6629	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNRZC010000126.1 Salmonella enterica strain PNUSAS390050 SAMN37769953-rid19675823.guided.096, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	IncFIB(S)	100	643 / 643	ABNRZC010000053.1 Salmonella enterica strain PNUSAS390050 SAMN37769953-rid19675823.denovo.054, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNRZC010000053.1 Salmonella enterica strain PNUSAS390050 SAMN37769953-rid19675823.denovo.054, whole genome shotgun sequence	9325..9586																																																avrA	ABNRZC010000012.1	99955..100824	99.885	870	0						
GCA_032615095.1_PDT001924782.1_genomic.fna	Salmonella_enterica	0.5222	69.075 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNRZD010000025.1 Salmonella enterica strain PNUSAS390049 SAMN37769950-rid19677253.denovo.025, whole genome shotgun sequence	13073..13510	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNRZD010000129.1 Salmonella enterica strain PNUSAS390049 SAMN37769950-rid19677253.guided.072, whole genome shotgun sequence	15163..15600	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNRZD010000053.1 Salmonella enterica strain PNUSAS390049 SAMN37769950-rid19677253.denovo.053, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNRZD010000053.1 Salmonella enterica strain PNUSAS390049 SAMN37769950-rid19677253.denovo.053, whole genome shotgun sequence	9325..9586																																																avrA	ABNRZD010000004.1	62123..62992	99.885	870	0						
GCA_032615135.1_PDT001924780.1_genomic.fna	Salmonella_enterica	0.5216	84.893 KB	20	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRZF010000021.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.denovo.021, whole genome shotgun sequence	20898..21335	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNRZF010000090.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.denovo.094, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNRZF010000117.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.guided.057, whole genome shotgun sequence	14354..14791	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNRZF010000120.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.guided.093, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNRZF010000090.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.denovo.094, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNRZF010000120.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.guided.093, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNRZF010000088.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.denovo.091, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNRZF010000123.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.guided.105, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNRZF010000082.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.denovo.084, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNRZF010000121.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.guided.098, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNRZF010000090.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.denovo.094, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNRZF010000120.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.guided.093, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNRZF010000106.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.denovo.114, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNRZF010000124.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.guided.113, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNRZF010000082.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.denovo.084, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNRZF010000122.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.guided.101, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNRZF010000082.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.denovo.084, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNRZF010000122.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.guided.101, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNRZF010000058.1 Salmonella enterica strain PNUSAS390045 SAMN37769935-rid19678693.denovo.059, whole genome shotgun sequence	4434..4684																																																						avrA	ABNRZF010000003.1	98362..99231	99.77	870	0						
GCA_032615315.1_PDT001924760.1_genomic.fna	Salmonella_enterica	0.5216	396.03 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNRZR010000008.1 Salmonella enterica strain PNUSAS389797 SAMN37769732-rid19678663.denovo.08, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNRZR010000031.1 Salmonella enterica strain PNUSAS389797 SAMN37769732-rid19678663.guided.15, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABNRZR010000012.1 Salmonella enterica strain PNUSAS389797 SAMN37769732-rid19678663.denovo.12, whole genome shotgun sequence	11098..11359																																																						avrA	ABNRZR010000002.1	131914..132783	98.966	870	0						
GCA_032615335.1_PDT001924762.1_genomic.fna	Salmonella_enterica	0.521	478.789 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRZO010000001.1 Salmonella enterica strain PNUSAS389784 SAMN37769736-rid19677193.denovo.01, whole genome shotgun sequence	774554..774991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRZO010000025.1 Salmonella enterica strain PNUSAS389784 SAMN37769736-rid19677193.guided.16, whole genome shotgun sequence	95..532	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRZO010000012.1 Salmonella enterica strain PNUSAS389784 SAMN37769736-rid19677193.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNRZO010000016.1 Salmonella enterica strain PNUSAS389784 SAMN37769736-rid19677193.denovo.18, whole genome shotgun sequence	3393..3654																																																avrA	ABNRZO010000002.1	585348..586217	99.54	870	0						
GCA_032615355.1_PDT001924761.1_genomic.fna	Salmonella_enterica	0.522	443.455 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNRZP010000001.1 Salmonella enterica strain PNUSAS389796 SAMN37769731-rid19679713.denovo.01, whole genome shotgun sequence	835211..835648	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNRZP010000021.1 Salmonella enterica strain PNUSAS389796 SAMN37769731-rid19679713.guided.16, whole genome shotgun sequence	3728..4165	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRZP010000004.1	148520..149389	99.77	870	0						
GCA_032615375.1_PDT001924764.1_genomic.fna	Salmonella_enterica	0.5215	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRZM010000001.1 Salmonella enterica strain PNUSAS389798 SAMN37769733-rid19680373.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRZM010000026.1 Salmonella enterica strain PNUSAS389798 SAMN37769733-rid19680373.guided.17, whole genome shotgun sequence	5896..6333	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRZM010000012.1 Salmonella enterica strain PNUSAS389798 SAMN37769733-rid19680373.denovo.12, whole genome shotgun sequence	40515..41157	enterobacteriales	IncFII(S)	100	262 / 262	ABNRZM010000015.1 Salmonella enterica strain PNUSAS389798 SAMN37769733-rid19680373.denovo.18, whole genome shotgun sequence	3398..3659																																																avrA	ABNRZM010000002.1	553636..554505	99.54	870	0						
GCA_032615395.1_PDT001924759.1_genomic.fna	Salmonella_enterica	0.5194	391.742 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRZQ010000001.1 Salmonella enterica strain PNUSAS389783 SAMN37769734-rid19679703.denovo.01, whole genome shotgun sequence	572144..572581	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNRZQ010000034.1 Salmonella enterica strain PNUSAS389783 SAMN37769734-rid19679703.guided.24, whole genome shotgun sequence	2085..2522	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNRZQ010000011.1	140201..141069	99.195	870	0						
GCA_032615415.1_PDT001924758.1_genomic.fna	Salmonella_enterica	0.5212	401.722 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNRZS010000004.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.denovo.04, whole genome shotgun sequence	159428..159865	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNRZS010000018.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.denovo.19, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNRZS010000018.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.denovo.19, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNRZS010000030.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.denovo.37, whole genome shotgun sequence	134..949	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	V00359	aph(6)-Id	100	837/837	ABNRZS010000039.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.guided.20, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNRZS010000039.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.guided.20, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNRZS010000040.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.guided.25, whole genome shotgun sequence	8605..9042	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNRZS010000044.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.guided.36, whole genome shotgun sequence	127..942	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	V00359	blaCMY-2	100	1146/1146	ABNRZS010000018.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.denovo.19, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNRZS010000026.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.denovo.30, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNRZS010000026.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.denovo.30, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNRZS010000026.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.denovo.30, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNRZS010000039.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.guided.20, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNRZS010000043.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.guided.34, whole genome shotgun sequence	40..863	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNRZS010000043.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.guided.34, whole genome shotgun sequence	40..863	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNRZS010000043.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.guided.34, whole genome shotgun sequence	40..863	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNRZS010000018.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.denovo.19, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNRZS010000042.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNRZS010000018.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.denovo.19, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNRZS010000039.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.guided.20, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNRZS010000018.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.denovo.19, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNRZS010000039.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.guided.20, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncC	100	417 / 417	ABNRZS010000015.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.denovo.16, whole genome shotgun sequence	15584..16000	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNRZS010000020.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.denovo.22, whole genome shotgun sequence	29514..29773		enterobacteriales	IncX1	98.66	374 / 374	ABNRZS010000022.1 Salmonella enterica strain PNUSAS389803 SAMN37769543-rid19675773.denovo.24, whole genome shotgun sequence	8826..9199																																									avrA	ABNRZS010000008.1	173549..174417	99.54	870	0						
GCA_032615475.1_PDT001924755.1_genomic.fna	Salmonella_enterica	0.5209	707.806 KB	3	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNRZV010000002.1 Salmonella enterica strain PNUSAS389808 SAMN37769544-rid19678653.denovo.02, whole genome shotgun sequence	624551..624988	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNRZV010000021.1 Salmonella enterica strain PNUSAS389808 SAMN37769544-rid19678653.guided.13, whole genome shotgun sequence	9499..9936	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032615495.1_PDT001924752.1_genomic.fna	Salmonella_enterica	0.521	314.888 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSAA010000001.1 Salmonella enterica strain PNUSAS389810 SAMN37769547-rid19677173.denovo.01, whole genome shotgun sequence	483332..483769	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNSAA010000043.1 Salmonella enterica strain PNUSAS389810 SAMN37769547-rid19677173.guided.26, whole genome shotgun sequence	1717..2154	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSAA010000016.1 Salmonella enterica strain PNUSAS389810 SAMN37769547-rid19677173.denovo.16, whole genome shotgun sequence	44641..45283	enterobacteriales	IncFII(S)	100	262 / 262	ABNSAA010000016.1 Salmonella enterica strain PNUSAS389810 SAMN37769547-rid19677173.denovo.16, whole genome shotgun sequence	60368..60629																																																avrA	ABNSAA010000004.1	174641..175510	99.885	870	0						
GCA_032615515.1_PDT001924754.1_genomic.fna	Salmonella_enterica	0.5223	761.796 KB	2	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNRZW010000001.1 Salmonella enterica strain PNUSAS389795 SAMN37769546-rid19680353.denovo.01, whole genome shotgun sequence	1371148..1371585	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNRZW010000020.1 Salmonella enterica strain PNUSAS389795 SAMN37769546-rid19680353.guided.15, whole genome shotgun sequence	13305..13742	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNRZW010000003.1	151330..152199	99.77	870	0						
GCA_032615555.1_PDT001924751.1_genomic.fna	Salmonella_enterica	0.5212	393.458 KB	4	aroC_10,dnaN_7,hemD_12,hisD_9,purE_70,sucA_9,thrA_2	213	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_70	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNRZY010000001.1 Salmonella enterica strain PNUSAS389786 SAMN37769540-rid19679693.denovo.01, whole genome shotgun sequence	673533..673970	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNRZY010000031.1 Salmonella enterica strain PNUSAS389786 SAMN37769540-rid19679693.guided.21, whole genome shotgun sequence	22602..23039	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNRZY010000002.1	507825..508694	99.885	870	0						
GCA_032615575.1_PDT001924750.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNRZZ010000001.1 Salmonella enterica strain PNUSAS389782 SAMN37769518-rid19678643.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNRZZ010000025.1 Salmonella enterica strain PNUSAS389782 SAMN37769518-rid19678643.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNRZZ010000012.1 Salmonella enterica strain PNUSAS389782 SAMN37769518-rid19678643.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNRZZ010000015.1 Salmonella enterica strain PNUSAS389782 SAMN37769518-rid19678643.denovo.18, whole genome shotgun sequence	3398..3659																																																avrA	ABNRZZ010000002.1	553636..554505	99.54	870	0						
GCA_032615595.1_PDT001924749.1_genomic.fna	Salmonella_enterica	0.5212	480.232 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSAB010000001.1 Salmonella enterica strain PNUSAS389790 SAMN37769515-rid19680343.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSAB010000023.1 Salmonella enterica strain PNUSAS389790 SAMN37769515-rid19680343.guided.17, whole genome shotgun sequence	530..967	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSAB010000011.1 Salmonella enterica strain PNUSAS389790 SAMN37769515-rid19680343.denovo.12, whole genome shotgun sequence	40564..41206	enterobacteriales	IncFII(S)	100	262 / 262	ABNSAB010000015.1 Salmonella enterica strain PNUSAS389790 SAMN37769515-rid19680343.denovo.18, whole genome shotgun sequence	3395..3656																																																avrA	ABNSAB010000002.1	553636..554505	99.54	870	0						
GCA_032615605.1_PDT001924748.1_genomic.fna	Salmonella_enterica	0.5215	410.978 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSAD010000001.1 Salmonella enterica strain PNUSAS389779 SAMN37769520-rid19675753.denovo.01, whole genome shotgun sequence	835148..835585	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSAD010000027.1 Salmonella enterica strain PNUSAS389779 SAMN37769520-rid19675753.guided.19, whole genome shotgun sequence	1397..1834	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSAD010000003.1	132164..133033	99.77	870	0						
GCA_032615655.1_PDT001924746.1_genomic.fna	Salmonella_enterica	0.5211	464.981 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSAE010000001.1 Salmonella enterica strain PNUSAS389794 SAMN37769509-rid19680333.denovo.01, whole genome shotgun sequence	828747..829184	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSAE010000025.1 Salmonella enterica strain PNUSAS389794 SAMN37769509-rid19680333.guided.19, whole genome shotgun sequence	7546..7983	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSAE010000010.1	105903..106771	99.195	870	0						
GCA_032615675.1_PDT001924745.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSAF010000001.1 Salmonella enterica strain PNUSAS389804 SAMN37769517-rid19678633.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSAF010000024.1 Salmonella enterica strain PNUSAS389804 SAMN37769517-rid19678633.guided.14, whole genome shotgun sequence	32264..32701	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSAF010000012.1 Salmonella enterica strain PNUSAS389804 SAMN37769517-rid19678633.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNSAF010000012.1 Salmonella enterica strain PNUSAS389804 SAMN37769517-rid19678633.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNSAF010000002.1	553642..554511	99.54	870	0						
GCA_032615695.1_PDT001924744.1_genomic.fna	Salmonella_enterica	0.5221	723.691 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNSAG010000001.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.denovo.01, whole genome shotgun sequence	150013..150450	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNSAG010000022.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.denovo.26, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNSAG010000032.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.guided.19, whole genome shotgun sequence	11132..11569	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNSAG010000035.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.guided.29, whole genome shotgun sequence	2776..3555	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNSAG010000022.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.denovo.26, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNSAG010000035.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.guided.29, whole genome shotgun sequence	1780..2646	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNSAG010000020.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.denovo.23, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNSAG010000033.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.guided.24, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNSAG010000019.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.denovo.22, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNSAG010000034.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.guided.28, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNSAG010000022.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.denovo.26, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNSAG010000035.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.guided.29, whole genome shotgun sequence	864..1520	Ciprofloxacin	AY070235	sul1	100	840/840	ABNSAG010000024.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.denovo.33, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSAG010000038.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.guided.32, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNSAG010000019.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.denovo.22, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNSAG010000036.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.guided.30, whole genome shotgun sequence	759..2033	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNSAG010000019.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.denovo.22, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNSAG010000037.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.guided.31, whole genome shotgun sequence	399..872	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNSAG010000016.1 Salmonella enterica strain PNUSAS389809 SAMN37769511-rid19680323.denovo.18, whole genome shotgun sequence	4434..4684																																																						avrA	ABNSAG010000002.1	586519..587388	99.77	870	0						
GCA_032615735.1_PDT001924742.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSAH010000001.1 Salmonella enterica strain PNUSAS389780 SAMN37769514-rid19677153.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSAH010000022.1 Salmonella enterica strain PNUSAS389780 SAMN37769514-rid19677153.guided.14, whole genome shotgun sequence	31636..32073	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSAH010000013.1 Salmonella enterica strain PNUSAS389780 SAMN37769514-rid19677153.denovo.15, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNSAH010000016.1 Salmonella enterica strain PNUSAS389780 SAMN37769514-rid19677153.denovo.19, whole genome shotgun sequence	3390..3651																																																avrA	ABNSAH010000002.1	553636..554505	99.54	870	0						
GCA_032616335.1_PDT001924709.1_genomic.fna	Salmonella_enterica	0.5217	451.361 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSBN010000001.1 Salmonella enterica strain PNUSAS389787 SAMN37769199-rid19680283.denovo.01, whole genome shotgun sequence	789046..789483	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSBN010000022.1 Salmonella enterica strain PNUSAS389787 SAMN37769199-rid19680283.guided.17, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSBN010000002.1	551345..552214	99.195	870	0						
GCA_032616455.1_PDT001924705.1_genomic.fna	Salmonella_enterica	0.522	356.358 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2	0		3	IncB/O/K/Z,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSBQ010000001.1 Salmonella enterica strain PNUSAS389607 SAMN37769093-rid19678543.denovo.01, whole genome shotgun sequence	482681..483118	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNSBQ010000038.1 Salmonella enterica strain PNUSAS389607 SAMN37769093-rid19678543.guided.28, whole genome shotgun sequence	8400..8837	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNSBQ010000018.1 Salmonella enterica strain PNUSAS389607 SAMN37769093-rid19678543.denovo.18, whole genome shotgun sequence	7844..8659	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNSBQ010000040.1 Salmonella enterica strain PNUSAS389607 SAMN37769093-rid19678543.guided.30, whole genome shotgun sequence	2845..3660	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncB/O/K/Z	100	160 / 160	ABNSBQ010000018.1 Salmonella enterica strain PNUSAS389607 SAMN37769093-rid19678543.denovo.18, whole genome shotgun sequence	40234..40393	enterobacteriales	IncFIB(S)	100	643 / 643	ABNSBQ010000022.1 Salmonella enterica strain PNUSAS389607 SAMN37769093-rid19678543.denovo.22, whole genome shotgun sequence	44740..45382		enterobacteriales	IncFII(S)	100	262 / 262	ABNSBQ010000022.1 Salmonella enterica strain PNUSAS389607 SAMN37769093-rid19678543.denovo.22, whole genome shotgun sequence	29394..29655																																									avrA	ABNSBQ010000002.1	208701..209570	99.885	870	0						
GCA_032616475.1_PDT001924700.1_genomic.fna	Salmonella_enterica	0.5214	324.292 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSBS010000001.1 Salmonella enterica strain PNUSAS389605 SAMN37769097-rid19677063.denovo.01, whole genome shotgun sequence	780559..780996	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSBS010000029.1 Salmonella enterica strain PNUSAS389605 SAMN37769097-rid19677063.guided.20, whole genome shotgun sequence	26898..27335	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSBS010000018.1 Salmonella enterica strain PNUSAS389605 SAMN37769097-rid19677063.denovo.18, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABNSBS010000023.1 Salmonella enterica strain PNUSAS389605 SAMN37769097-rid19677063.denovo.26, whole genome shotgun sequence	3402..3663																																																avrA	ABNSBS010000007.1	175197..176066	99.54	870	0						
GCA_032616535.1_PDT001924695.1_genomic.fna	Salmonella_enterica	0.522	395.505 KB	5	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSBW010000001.1 Salmonella enterica strain PNUSAS389609 SAMN37769088-rid19678513.denovo.01, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNSBW010000033.1 Salmonella enterica strain PNUSAS389609 SAMN37769088-rid19678513.guided.17, whole genome shotgun sequence	18115..18552	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNSBW010000024.1 Salmonella enterica strain PNUSAS389609 SAMN37769088-rid19678513.denovo.27, whole genome shotgun sequence	557..687	enterobacteriales	ColRNAI	90.83	109 / 130	ABNSBW010000023.1 Salmonella enterica strain PNUSAS389609 SAMN37769088-rid19678513.denovo.26, whole genome shotgun sequence	1016..1124																																																avrA	ABNSBW010000012.1	36961..37830	99.425	870	0						
GCA_032616555.1_PDT001924696.1_genomic.fna	Salmonella_enterica	0.5199	410.978 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncI2(Delta)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSBV010000001.1 Salmonella enterica strain PNUSAS389608 SAMN37769095-rid19675593.denovo.01, whole genome shotgun sequence	683877..684314	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSBV010000026.1 Salmonella enterica strain PNUSAS389608 SAMN37769095-rid19675593.guided.19, whole genome shotgun sequence	22495..22932	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNSBV010000016.1 Salmonella enterica strain PNUSAS389608 SAMN37769095-rid19675593.denovo.16, whole genome shotgun sequence	34930..35463	enterobacteriales	IncI2(Delta)	100	316 / 316	ABNSBV010000017.1 Salmonella enterica strain PNUSAS389608 SAMN37769095-rid19675593.denovo.17, whole genome shotgun sequence	27623..27938																																																avrA	ABNSBV010000002.1	563541..564410	99.77	870	0						
GCA_032616615.1_PDT001924692.1_genomic.fna	Salmonella_enterica	0.5226	397.516 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSBZ010000001.1 Salmonella enterica strain PNUSAS389610 SAMN37769085-rid19677043.denovo.01, whole genome shotgun sequence	790293..790730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNSBZ010000026.1 Salmonella enterica strain PNUSAS389610 SAMN37769085-rid19677043.guided.18, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSBZ010000006.1	147026..147895	98.966	870	0						
GCA_032616675.1_PDT001924688.1_genomic.fna	Salmonella_enterica	0.5205	466.624 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSCD010000002.1 Salmonella enterica strain PNUSAS389611 SAMN37769098-rid19678483.denovo.02, whole genome shotgun sequence	477381..477818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSCD010000027.1 Salmonella enterica strain PNUSAS389611 SAMN37769098-rid19678483.guided.22, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNSCD010000015.1 Salmonella enterica strain PNUSAS389611 SAMN37769098-rid19678483.denovo.15, whole genome shotgun sequence	6073..6606																																																						avrA	ABNSCD010000008.1	150695..151565	99.196	871	0						
GCA_032616695.1_PDT001924684.1_genomic.fna	Salmonella_enterica	0.5217	338.738 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSCF010000003.1 Salmonella enterica strain PNUSAS389604 SAMN37768680-rid19679643.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNSCF010000044.1 Salmonella enterica strain PNUSAS389604 SAMN37768680-rid19679643.guided.32, whole genome shotgun sequence	10576..11013	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSCF010000024.1 Salmonella enterica strain PNUSAS389604 SAMN37768680-rid19679643.denovo.24, whole genome shotgun sequence	44740..45382	enterobacteriales	IncFII(S)	100	262 / 262	ABNSCF010000024.1 Salmonella enterica strain PNUSAS389604 SAMN37768680-rid19679643.denovo.24, whole genome shotgun sequence	29394..29655																																																avrA	ABNSCF010000001.1	446745..447613	100	869	0						
GCA_032616755.1_PDT001924678.1_genomic.fna	Salmonella_enterica	0.5219	317.631 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSCI010000003.1 Salmonella enterica strain PNUSAS389603 SAMN37768677-rid19678453.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNSCI010000042.1 Salmonella enterica strain PNUSAS389603 SAMN37768677-rid19678453.guided.28, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSCI010000016.1 Salmonella enterica strain PNUSAS389603 SAMN37768677-rid19678453.denovo.16, whole genome shotgun sequence	6840..7482	enterobacteriales	IncFII(S)	100	262 / 262	ABNSCI010000016.1 Salmonella enterica strain PNUSAS389603 SAMN37768677-rid19678453.denovo.16, whole genome shotgun sequence	22567..22828																																																avrA	ABNSCI010000006.1	143429..144297	100	869	0						
GCA_032616895.1_PDT001924671.1_genomic.fna	Salmonella_enterica	0.5214	396.166 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSCM010000001.1 Salmonella enterica strain PNUSAS389606 SAMN37768683-rid19675543.denovo.01, whole genome shotgun sequence	1058915..1059352	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSCM010000022.1 Salmonella enterica strain PNUSAS389606 SAMN37768683-rid19675543.guided.14, whole genome shotgun sequence	36792..37229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNSCM010000013.1 Salmonella enterica strain PNUSAS389606 SAMN37768683-rid19675543.denovo.13, whole genome shotgun sequence	34944..35477																																																						avrA	ABNSCM010000008.1	194891..195761	99.196	871	0						
GCA_032616935.1_PDT001924669.1_genomic.fna	Salmonella_enterica	0.5205	276.52 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSCO010000001.1 Salmonella enterica strain PNUSAS389602 SAMN37768675-rid19680243.denovo.01, whole genome shotgun sequence	458965..459402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNSCO010000047.1 Salmonella enterica strain PNUSAS389602 SAMN37768675-rid19680243.guided.32, whole genome shotgun sequence	22225..22662	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNSCO010000018.1 Salmonella enterica strain PNUSAS389602 SAMN37768675-rid19680243.denovo.18, whole genome shotgun sequence	65915..67120	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSCO010000048.1 Salmonella enterica strain PNUSAS389602 SAMN37768675-rid19680243.guided.35, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNSCO010000018.1 Salmonella enterica strain PNUSAS389602 SAMN37768675-rid19680243.denovo.18, whole genome shotgun sequence	73506..73647	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNSCO010000048.1 Salmonella enterica strain PNUSAS389602 SAMN37768675-rid19680243.guided.35, whole genome shotgun sequence	3169..3310																																																avrA	ABNSCO010000004.1	174926..175795	99.885	870	0						
GCA_032617055.1_PDT001924660.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSCW010000001.1 Salmonella enterica strain PNUSAS389801 SAMN37768629-rid19676933.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSCW010000027.1 Salmonella enterica strain PNUSAS389801 SAMN37768629-rid19676933.guided.14, whole genome shotgun sequence	7772..8209	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSCW010000012.1 Salmonella enterica strain PNUSAS389801 SAMN37768629-rid19676933.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNSCW010000016.1 Salmonella enterica strain PNUSAS389801 SAMN37768629-rid19676933.denovo.18, whole genome shotgun sequence	3388..3649																																																avrA	ABNSCW010000002.1	553636..554505	99.54	870	0						
GCA_032617115.1_PDT001924656.1_genomic.fna	Salmonella_enterica	0.5224	570.129 KB	4	aroC_347,dnaN_394,hemD_78,hisD_496,purE_426,sucA_9,thrA_102	1549	8:r:z6	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_347	dnaN	100	100	dnaN_394	hemD	100	100	hemD_78	hisD	100	100	hisD_496	purE	100	100	purE_426	sucA	100	100	sucA_9	thrA	100	100	thrA_102	8	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Altona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSCY010000001.1 Salmonella enterica strain PNUSAS389791 SAMN37768343-rid19675513.denovo.01, whole genome shotgun sequence	735509..735946	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSCY010000027.1 Salmonella enterica strain PNUSAS389791 SAMN37768343-rid19675513.guided.19, whole genome shotgun sequence	13705..14142	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNSCY010000019.1 Salmonella enterica strain PNUSAS389791 SAMN37768343-rid19675513.denovo.23, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNSCY010000028.1 Salmonella enterica strain PNUSAS389791 SAMN37768343-rid19675513.guided.22, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNSCY010000019.1 Salmonella enterica strain PNUSAS389791 SAMN37768343-rid19675513.denovo.23, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNSCY010000028.1 Salmonella enterica strain PNUSAS389791 SAMN37768343-rid19675513.guided.22, whole genome shotgun sequence	1962..2092																																																avrA	ABNSCY010000004.1	547046..547915	99.195	870	0						
GCA_032617155.1_PDT001924655.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSCZ010000001.1 Salmonella enterica strain PNUSAS389781 SAMN37768339-rid19676913.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSCZ010000023.1 Salmonella enterica strain PNUSAS389781 SAMN37768339-rid19676913.guided.13, whole genome shotgun sequence	33924..34361	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSCZ010000012.1 Salmonella enterica strain PNUSAS389781 SAMN37768339-rid19676913.denovo.14, whole genome shotgun sequence	40538..41180	enterobacteriales	IncFII(S)	100	262 / 262	ABNSCZ010000016.1 Salmonella enterica strain PNUSAS389781 SAMN37768339-rid19676913.denovo.19, whole genome shotgun sequence	3412..3673																																																avrA	ABNSCZ010000002.1	553613..554482	99.54	870	0						
GCA_032617175.1_PDT001924653.1_genomic.fna	Salmonella_enterica	0.5219	510.017 KB	4	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	1	IncQ1,IncQ1	aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSDC010000001.1 Salmonella enterica strain PNUSAS389792 SAMN37768341-rid19676903.denovo.01, whole genome shotgun sequence	830664..831101	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSDC010000018.1 Salmonella enterica strain PNUSAS389792 SAMN37768341-rid19676903.denovo.22, whole genome shotgun sequence	9274..10110	Streptomycin	M28829	aph(3'')-Ib	100	780/804	ABNSDC010000018.1 Salmonella enterica strain PNUSAS389792 SAMN37768341-rid19676903.denovo.22, whole genome shotgun sequence	10110..10889	Streptomycin	AF321551	aac(6')-Iaa	99.77	438/438	ABNSDC010000031.1 Salmonella enterica strain PNUSAS389792 SAMN37768341-rid19676903.guided.20, whole genome shotgun sequence	11288..11725	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSDC010000032.1 Salmonella enterica strain PNUSAS389792 SAMN37768341-rid19676903.guided.21, whole genome shotgun sequence	7203..8039	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSDC010000032.1 Salmonella enterica strain PNUSAS389792 SAMN37768341-rid19676903.guided.21, whole genome shotgun sequence	6400..7203	Streptomycin	AF321551	sul2	100	816/816	ABNSDC010000018.1 Salmonella enterica strain PNUSAS389792 SAMN37768341-rid19676903.denovo.22, whole genome shotgun sequence	85..900	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNSDC010000032.1 Salmonella enterica strain PNUSAS389792 SAMN37768341-rid19676903.guided.21, whole genome shotgun sequence	5524..6339	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNSDC010000018.1 Salmonella enterica strain PNUSAS389792 SAMN37768341-rid19676903.denovo.22, whole genome shotgun sequence	6739..8013	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNSDC010000032.1 Salmonella enterica strain PNUSAS389792 SAMN37768341-rid19676903.guided.21, whole genome shotgun sequence	9300..10574	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncQ1	100	796 / 796	ABNSDC010000018.1 Salmonella enterica strain PNUSAS389792 SAMN37768341-rid19676903.denovo.22, whole genome shotgun sequence	2239..3034	enterobacteriales	IncQ1	100	796 / 796	ABNSDC010000032.1 Salmonella enterica strain PNUSAS389792 SAMN37768341-rid19676903.guided.21, whole genome shotgun sequence	3390..4185																																																avrA	ABNSDC010000003.1	139987..140856	99.425	870	0						
GCA_032617215.1_PDT001924652.1_genomic.fna	Salmonella_enterica	0.5209	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSDD010000001.1 Salmonella enterica strain PNUSAS389799 SAMN37768340-rid19680223.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSDD010000024.1 Salmonella enterica strain PNUSAS389799 SAMN37768340-rid19680223.guided.13, whole genome shotgun sequence	16190..16627	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSDD010000012.1 Salmonella enterica strain PNUSAS389799 SAMN37768340-rid19680223.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNSDD010000016.1 Salmonella enterica strain PNUSAS389799 SAMN37768340-rid19680223.denovo.19, whole genome shotgun sequence	3413..3674																																																avrA	ABNSDD010000002.1	553636..554505	99.54	870	0						
GCA_032617235.1_PDT001924651.1_genomic.fna	Salmonella_enterica	0.521	476.977 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSDE010000001.1 Salmonella enterica strain PNUSAS389822 SAMN37768276-rid19675243.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSDE010000030.1 Salmonella enterica strain PNUSAS389822 SAMN37768276-rid19675243.guided.15, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSDE010000018.1 Salmonella enterica strain PNUSAS389822 SAMN37768276-rid19675243.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNSDE010000015.1 Salmonella enterica strain PNUSAS389822 SAMN37768276-rid19675243.denovo.16, whole genome shotgun sequence	3877..4138																																																avrA	ABNSDE010000002.1	585490..586359	99.54	870	0						
GCA_032617295.1_PDT001924649.1_genomic.fna	Salmonella_enterica	0.5206	610.519 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSDG010000003.1 Salmonella enterica strain PNUSAS389823 SAMN37768273-rid19678403.denovo.03, whole genome shotgun sequence	522473..522910	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNSDG010000023.1 Salmonella enterica strain PNUSAS389823 SAMN37768273-rid19678403.guided.15, whole genome shotgun sequence	32400..32837	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSDG010000004.1	407387..408256	99.425	870	0						
GCA_032617815.1_PDT001924051.2_genomic.fna	Salmonella_enterica	0.5197	106.607 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDQQ010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.denovo.010, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDQQ010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.denovo.068, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDQQ010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.denovo.068, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQDQQ010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.guided.069, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDQQ010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.guided.069, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDQQ010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.guided.074, whole genome shotgun sequence	885..1319	Amikacin, Tobramycin	NC_003197	blaCTX-M-15	100	876/876	DAQDQQ010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.denovo.039, whole genome shotgun sequence	33081..33956	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDQQ010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.guided.071, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDQQ010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.denovo.039, whole genome shotgun sequence	38597..39253	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDQQ010000113.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.guided.085, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDQQ010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.denovo.068, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDQQ010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.guided.069, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDQQ010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.denovo.039, whole genome shotgun sequence	29071..30270	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDQQ010000110.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.guided.072, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDQQ010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.denovo.078, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDQQ010000112.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.guided.077, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDQQ010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.denovo.065, whole genome shotgun sequence	3449..4008	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDQQ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.denovo.015, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDQQ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2-CTR isolate 2-CTR SAMEA113534621-rid19673023.denovo.050, whole genome shotgun sequence	28572..28945																																																				
GCA_032617895.1_PDT001924581.1_genomic.fna	Salmonella_enterica	0.5209	152.857 KB	11	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSEA010000020.1 Salmonella enterica isolate 23KS07CG01-S1 SAMN37766478-rid19674373.denovo.20, whole genome shotgun sequence	31197..31634	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNSEA010000046.1 Salmonella enterica isolate 23KS07CG01-S1 SAMN37766478-rid19674373.denovo.47, whole genome shotgun sequence	6054..6856	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNSEA010000046.1 Salmonella enterica isolate 23KS07CG01-S1 SAMN37766478-rid19674373.denovo.47, whole genome shotgun sequence	6054..6857	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNSEA010000046.1 Salmonella enterica isolate 23KS07CG01-S1 SAMN37766478-rid19674373.denovo.47, whole genome shotgun sequence	6054..6857	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNSEA010000046.1 Salmonella enterica isolate 23KS07CG01-S1 SAMN37766478-rid19674373.denovo.47, whole genome shotgun sequence	6054..6857	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNSEA010000046.1 Salmonella enterica isolate 23KS07CG01-S1 SAMN37766478-rid19674373.denovo.47, whole genome shotgun sequence	5314..6054	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNSEA010000046.1 Salmonella enterica isolate 23KS07CG01-S1 SAMN37766478-rid19674373.denovo.47, whole genome shotgun sequence	5314..6054	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABNSEA010000072.1 Salmonella enterica isolate 23KS07CG01-S1 SAMN37766478-rid19674373.guided.57, whole genome shotgun sequence	470..907	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNSEA010000073.1 Salmonella enterica isolate 23KS07CG01-S1 SAMN37766478-rid19674373.guided.58, whole genome shotgun sequence	534..1336	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNSEA010000073.1 Salmonella enterica isolate 23KS07CG01-S1 SAMN37766478-rid19674373.guided.58, whole genome shotgun sequence	533..1336	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNSEA010000073.1 Salmonella enterica isolate 23KS07CG01-S1 SAMN37766478-rid19674373.guided.58, whole genome shotgun sequence	533..1336	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNSEA010000073.1 Salmonella enterica isolate 23KS07CG01-S1 SAMN37766478-rid19674373.guided.58, whole genome shotgun sequence	533..1336	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNSEA010000073.1 Salmonella enterica isolate 23KS07CG01-S1 SAMN37766478-rid19674373.guided.58, whole genome shotgun sequence	1336..2076	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNSEA010000073.1 Salmonella enterica isolate 23KS07CG01-S1 SAMN37766478-rid19674373.guided.58, whole genome shotgun sequence	1336..2076	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNSEA010000054.1 Salmonella enterica isolate 23KS07CG01-S1 SAMN37766478-rid19674373.denovo.56, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABNSEA010000030.1 Salmonella enterica isolate 23KS07CG01-S1 SAMN37766478-rid19674373.denovo.30, whole genome shotgun sequence	5359..5855																																																avrA	ABNSEA010000028.1	52762..53631	98.966	870	0						
GCA_032617915.1_PDT001924579.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSEC010000001.1 Salmonella enterica isolate 23KS07CL01-S1 SAMN37766480-rid19674363.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSEC010000030.1 Salmonella enterica isolate 23KS07CL01-S1 SAMN37766480-rid19674363.guided.23, whole genome shotgun sequence	1179..1616	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSEC010000013.1 Salmonella enterica isolate 23KS07CL01-S1 SAMN37766480-rid19674363.denovo.13, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNSEC010000017.1 Salmonella enterica isolate 23KS07CL01-S1 SAMN37766480-rid19674363.denovo.19, whole genome shotgun sequence	3446..3707																																																avrA	ABNSEC010000002.1	553636..554505	99.54	870	0						
GCA_032617935.1_PDT001924578.1_genomic.fna	Salmonella_enterica	0.5205	399.124 KB	3	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSED010000001.1 Salmonella enterica isolate 23KS08GT02-S1 SAMN37766481-rid19675203.denovo.01, whole genome shotgun sequence	624509..624946	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSED010000031.1 Salmonella enterica isolate 23KS08GT02-S1 SAMN37766481-rid19675203.guided.20, whole genome shotgun sequence	4619..5056	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	97.83	322 / 316	ABNSED010000014.1 Salmonella enterica isolate 23KS08GT02-S1 SAMN37766481-rid19675203.denovo.14, whole genome shotgun sequence	29970..30291																																																																	
GCA_032617955.1_PDT001924580.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSEB010000001.1 Salmonella enterica isolate 23KS07CH01-S1 SAMN37766479-rid19672973.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSEB010000027.1 Salmonella enterica isolate 23KS07CH01-S1 SAMN37766479-rid19672973.guided.16, whole genome shotgun sequence	4567..5004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSEB010000012.1 Salmonella enterica isolate 23KS07CH01-S1 SAMN37766479-rid19672973.denovo.13, whole genome shotgun sequence	40579..41221	enterobacteriales	IncFII(S)	100	262 / 262	ABNSEB010000016.1 Salmonella enterica isolate 23KS07CH01-S1 SAMN37766479-rid19672973.denovo.18, whole genome shotgun sequence	3446..3707																																																avrA	ABNSEB010000002.1	553636..554505	99.54	870	0						
GCA_032617975.1_PDT001924577.1_genomic.fna	Salmonella_enterica	0.5171	148.444 KB	10	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia	1	parC_p.T57S	4	IncHI2,IncHI2A,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSEF010000019.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.denovo.019, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSEF010000038.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.denovo.038, whole genome shotgun sequence	2314..3150	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNSEF010000038.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.denovo.038, whole genome shotgun sequence	1512..2314	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNSEF010000038.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.denovo.038, whole genome shotgun sequence	1511..2314	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNSEF010000038.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.denovo.038, whole genome shotgun sequence	1511..2314	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNSEF010000038.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.denovo.038, whole genome shotgun sequence	1511..2314	Streptomycin	AF321550	aph(3')-Ia	100	816/816	ABNSEF010000107.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.denovo.112, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	aph(6)-Id	100	837/837	ABNSEF010000138.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.guided.058, whole genome shotgun sequence	2355..3191	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNSEF010000138.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.guided.058, whole genome shotgun sequence	1553..2355	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNSEF010000138.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.guided.058, whole genome shotgun sequence	1552..2355	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNSEF010000138.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.guided.058, whole genome shotgun sequence	1552..2355	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNSEF010000138.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.guided.058, whole genome shotgun sequence	1552..2355	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNSEF010000140.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.guided.089, whole genome shotgun sequence	1549..1986	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNSEF010000142.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.guided.111, whole genome shotgun sequence	126..941	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNSEF010000031.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.denovo.031, whole genome shotgun sequence	28959..29285	enterobacteriales	IncHI2A	99.52	630 / 630	ABNSEF010000031.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.denovo.031, whole genome shotgun sequence	47269..47898		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNSEF010000082.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.denovo.084, whole genome shotgun sequence	1119..1260		enterobacteriales	IncX1	100	373 / 373	ABNSEF010000066.1 Salmonella enterica isolate 23KS06CL01-S1 SAMN37766482-rid19674353.denovo.067, whole genome shotgun sequence	2218..2590																																		avrA	ABNSEF010000032.1	39508..40377	99.655	870	0						
GCA_032618015.1_PDT001924574.1_genomic.fna	Salmonella_enterica	0.5204	359.124 KB	6	aroC_499,dnaN_463,hemD_10,hisD_36,purE_25,sucA_46,thrA_36	2133	4:z29:-	7	aac(6')-Iaa,aph(3')-Ia,aph(3')-Ia,aac(6')-Iaa,blaTEM-176,blaTEM-176,floR,floR,qnrS1,qnrS1,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	2	Col440I,IncX1	aroC	100	100	aroC_499	dnaN	100	100	dnaN_463	hemD	100	100	hemD_10	hisD	100	100	hisD_36	purE	100	100	purE_25	sucA	100	100	sucA_46	thrA	100	100	thrA_36	4	z29	-	Salmonella enterica subspecies enterica (subspecies I)	Brancaster		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNSEH010000009.1 Salmonella enterica strain PNUSAS389878 SAMN37767690-rid19674333.denovo.09, whole genome shotgun sequence	158446..158883	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.88	816/816	ABNSEH010000020.1 Salmonella enterica strain PNUSAS389878 SAMN37767690-rid19674333.denovo.20, whole genome shotgun sequence	26002..26817	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EF015636	aph(3')-Ia	99.88	816/816	ABNSEH010000042.1 Salmonella enterica strain PNUSAS389878 SAMN37767690-rid19674333.guided.27, whole genome shotgun sequence	148..963	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EF015636	aac(6')-Iaa	98.17	438/438	ABNSEH010000043.1 Salmonella enterica strain PNUSAS389878 SAMN37767690-rid19674333.guided.29, whole genome shotgun sequence	3930..4367	Amikacin, Tobramycin	NC_003197	blaTEM-176	100	861/861	ABNSEH010000020.1 Salmonella enterica strain PNUSAS389878 SAMN37767690-rid19674333.denovo.20, whole genome shotgun sequence	72..932	Unknown Beta-lactam	GU550123	blaTEM-176	100	861/861	ABNSEH010000045.1 Salmonella enterica strain PNUSAS389878 SAMN37767690-rid19674333.guided.36, whole genome shotgun sequence	111..971	Unknown Beta-lactam	GU550123	floR	98.11	1214/1215	ABNSEH010000027.1 Salmonella enterica strain PNUSAS389878 SAMN37767690-rid19674333.denovo.32, whole genome shotgun sequence	966..2179	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNSEH010000044.1 Salmonella enterica strain PNUSAS389878 SAMN37767690-rid19674333.guided.30, whole genome shotgun sequence	3744..4957	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNSEH010000032.1 Salmonella enterica strain PNUSAS389878 SAMN37767690-rid19674333.denovo.39, whole genome shotgun sequence	653..1309	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNSEH010000046.1 Salmonella enterica strain PNUSAS389878 SAMN37767690-rid19674333.guided.38, whole genome shotgun sequence	594..1250	Ciprofloxacin	AB187515	tet(A)	100	1275/1275	ABNSEH010000027.1 Salmonella enterica strain PNUSAS389878 SAMN37767690-rid19674333.denovo.32, whole genome shotgun sequence	2780..4054	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNSEH010000044.1 Salmonella enterica strain PNUSAS389878 SAMN37767690-rid19674333.guided.30, whole genome shotgun sequence	1869..3143	Doxycycline, Tetracycline	AF534183	dfrA14	100	474/474	ABNSEH010000033.1 Salmonella enterica strain PNUSAS389878 SAMN37767690-rid19674333.denovo.41, whole genome shotgun sequence	182..655	Trimethoprim	KF921535	dfrA14	100	474/474	ABNSEH010000047.1 Salmonella enterica strain PNUSAS389878 SAMN37767690-rid19674333.guided.40, whole genome shotgun sequence	1200..1673	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.81	113 / 114	ABNSEH010000031.1 Salmonella enterica strain PNUSAS389878 SAMN37767690-rid19674333.denovo.37, whole genome shotgun sequence	2529..2640	enterobacteriales	IncX1	98.93	374 / 374	ABNSEH010000020.1 Salmonella enterica strain PNUSAS389878 SAMN37767690-rid19674333.denovo.20, whole genome shotgun sequence	5059..5432																																																avrA	ABNSEH010000008.1	185326..186195	99.655	870	0						
GCA_032618035.1_PDT001924575.1_genomic.fna	Salmonella_enterica	0.521	301.234 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSEG010000001.1 Salmonella enterica strain PNUSAS389843 SAMN37767682-rid19672963.denovo.01, whole genome shotgun sequence	517866..518303	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSEG010000031.1 Salmonella enterica strain PNUSAS389843 SAMN37767682-rid19672963.denovo.36, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSEG010000031.1 Salmonella enterica strain PNUSAS389843 SAMN37767682-rid19672963.denovo.36, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNSEG010000038.1 Salmonella enterica strain PNUSAS389843 SAMN37767682-rid19672963.guided.19, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSEG010000042.1 Salmonella enterica strain PNUSAS389843 SAMN37767682-rid19672963.guided.34, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSEG010000042.1 Salmonella enterica strain PNUSAS389843 SAMN37767682-rid19672963.guided.34, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNSEG010000034.1 Salmonella enterica strain PNUSAS389843 SAMN37767682-rid19672963.denovo.40, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNSEG010000043.1 Salmonella enterica strain PNUSAS389843 SAMN37767682-rid19672963.guided.39, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNSEG010000031.1 Salmonella enterica strain PNUSAS389843 SAMN37767682-rid19672963.denovo.36, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNSEG010000042.1 Salmonella enterica strain PNUSAS389843 SAMN37767682-rid19672963.guided.34, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNSEG010000025.1 Salmonella enterica strain PNUSAS389843 SAMN37767682-rid19672963.denovo.28, whole genome shotgun sequence	10940..12145	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSEG010000041.1 Salmonella enterica strain PNUSAS389843 SAMN37767682-rid19672963.guided.29, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNSEG010000002.1	540741..541610	99.885	870	0						
GCA_032618075.1_PDT001924572.1_genomic.fna	Salmonella_enterica	0.5195	372.578 KB	5	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_19,thrA_12	582	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSEK010000001.1 Salmonella enterica strain PNUSAS389868 SAMN37767693-rid19674313.denovo.01, whole genome shotgun sequence	479083..479520	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNSEK010000041.1 Salmonella enterica strain PNUSAS389868 SAMN37767693-rid19674313.guided.31, whole genome shotgun sequence	290..727	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.81	113 / 114	ABNSEK010000033.1 Salmonella enterica strain PNUSAS389868 SAMN37767693-rid19674313.denovo.35, whole genome shotgun sequence	2528..2639	enterobacteriales	ColpVC	98.96	193 / 193	ABNSEK010000036.1 Salmonella enterica strain PNUSAS389868 SAMN37767693-rid19674313.denovo.39, whole genome shotgun sequence	805..997																																																avrA	ABNSEK010000006.1	39545..40414	99.54	870	0						
GCA_032618095.1_PDT001924571.1_genomic.fna	Salmonella_enterica	0.5214	666.543 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pCTU2),pESA2	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSEJ010000003.1 Salmonella enterica strain PNUSAS389876 SAMN37767687-rid19672953.denovo.03, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSEJ010000033.1 Salmonella enterica strain PNUSAS389876 SAMN37767687-rid19672953.guided.23, whole genome shotgun sequence	2416..2853	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCTU2)	95.67	577 / 577	ABNSEJ010000018.1 Salmonella enterica strain PNUSAS389876 SAMN37767687-rid19672953.denovo.18, whole genome shotgun sequence	14607..15183	enterobacteriales	pESA2	96.1	744 / 750	ABNSEJ010000018.1 Salmonella enterica strain PNUSAS389876 SAMN37767687-rid19672953.denovo.18, whole genome shotgun sequence	9279..10022																																																avrA	ABNSEJ010000004.1	514966..515834	99.195	870	0						
GCA_032618135.1_PDT001924570.1_genomic.fna	Salmonella_enterica	0.5212	194.508 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSEL010000001.1 Salmonella enterica strain PNUSAS389874 SAMN37767691-rid19672943.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNSEL010000042.1 Salmonella enterica strain PNUSAS389874 SAMN37767691-rid19672943.denovo.43, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNSEL010000042.1 Salmonella enterica strain PNUSAS389874 SAMN37767691-rid19672943.denovo.43, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNSEL010000052.1 Salmonella enterica strain PNUSAS389874 SAMN37767691-rid19672943.denovo.61, whole genome shotgun sequence	92..907	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aac(6')-Iaa	97.49	438/438	ABNSEL010000058.1 Salmonella enterica strain PNUSAS389874 SAMN37767691-rid19672943.guided.39, whole genome shotgun sequence	9924..10361	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNSEL010000060.1 Salmonella enterica strain PNUSAS389874 SAMN37767691-rid19672943.guided.48, whole genome shotgun sequence	20..1045	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNSEL010000065.1 Salmonella enterica strain PNUSAS389874 SAMN37767691-rid19672943.guided.58, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNSEL010000066.1 Salmonella enterica strain PNUSAS389874 SAMN37767691-rid19672943.guided.59, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	blaCTX-M-65	100	876/876	ABNSEL010000046.1 Salmonella enterica strain PNUSAS389874 SAMN37767691-rid19672943.denovo.49, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNSEL010000061.1 Salmonella enterica strain PNUSAS389874 SAMN37767691-rid19672943.guided.50, whole genome shotgun sequence	940..1815	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	tet(A)	100	1200/1200	ABNSEL010000034.1 Salmonella enterica strain PNUSAS389874 SAMN37767691-rid19672943.denovo.34, whole genome shotgun sequence	3731..4930	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSEL010000062.1 Salmonella enterica strain PNUSAS389874 SAMN37767691-rid19672943.guided.53, whole genome shotgun sequence	1500..2699	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNSEL010000040.1 Salmonella enterica strain PNUSAS389874 SAMN37767691-rid19672943.denovo.41, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNSEL010000063.1 Salmonella enterica strain PNUSAS389874 SAMN37767691-rid19672943.guided.54, whole genome shotgun sequence	1273..1746	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSEL010000033.1 Salmonella enterica strain PNUSAS389874 SAMN37767691-rid19672943.denovo.33, whole genome shotgun sequence	9109..9668																																																						avrA	ABNSEL010000002.1	149782..150651	99.655	870	0						
GCA_032618155.1_PDT001924569.1_genomic.fna	Salmonella_enterica	0.5214	375.668 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSEM010000001.1 Salmonella enterica strain PNUSAS389879 SAMN37767688-rid19674303.denovo.01, whole genome shotgun sequence	774335..774772	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSEM010000030.1 Salmonella enterica strain PNUSAS389879 SAMN37767688-rid19674303.guided.26, whole genome shotgun sequence	716..1153	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSEM010000020.1 Salmonella enterica strain PNUSAS389879 SAMN37767688-rid19674303.denovo.20, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNSEM010000022.1 Salmonella enterica strain PNUSAS389879 SAMN37767688-rid19674303.denovo.22, whole genome shotgun sequence	3412..3673																																																avrA	ABNSEM010000002.1	553636..554505	99.54	870	0						
GCA_032618195.1_PDT001924565.1_genomic.fna	Salmonella_enterica	0.5214	83.605 KB	19	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSEQ010000021.1 Salmonella enterica strain PNUSAS389870 SAMN37767692-rid19672933.denovo.021, whole genome shotgun sequence	28306..28743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSEQ010000101.1 Salmonella enterica strain PNUSAS389870 SAMN37767692-rid19672933.guided.082, whole genome shotgun sequence	5176..5613	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSEQ010000071.1 Salmonella enterica strain PNUSAS389870 SAMN37767692-rid19672933.denovo.071, whole genome shotgun sequence	6843..7485	enterobacteriales	IncFII(S)	100	262 / 262	ABNSEQ010000041.1 Salmonella enterica strain PNUSAS389870 SAMN37767692-rid19672933.denovo.041, whole genome shotgun sequence	37120..37381																																																avrA	ABNSEQ010000002.1	132012..132881	99.54	870	0						
GCA_032618235.1_PDT001924564.1_genomic.fna	Salmonella_enterica	0.5214	706.855 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSER010000001.1 Salmonella enterica strain PNUSAS389848 SAMN37767681-rid19674273.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSER010000014.1 Salmonella enterica strain PNUSAS389848 SAMN37767681-rid19674273.guided.11, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032618255.1_PDT001924563.1_genomic.fna	Salmonella_enterica	0.5225	352.284 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNSES010000001.1 Salmonella enterica strain PNUSAS389877 SAMN37767689-rid19674263.denovo.01, whole genome shotgun sequence	405412..405849	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNSES010000034.1 Salmonella enterica strain PNUSAS389877 SAMN37767689-rid19674263.guided.24, whole genome shotgun sequence	3966..4403	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNSES010000024.1 Salmonella enterica strain PNUSAS389877 SAMN37767689-rid19674263.denovo.27, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNSES010000025.1 Salmonella enterica strain PNUSAS389877 SAMN37767689-rid19674263.denovo.28, whole genome shotgun sequence	2528..2639																																																avrA	ABNSES010000006.1	174277..175145	99.425	870	0						
GCA_032618275.1_PDT001924562.1_genomic.fna	Salmonella_enterica	0.5215	407.478 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSET010000002.1 Salmonella enterica strain PNUSAS389862 SAMN37767652-rid19674253.denovo.02, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSET010000035.1 Salmonella enterica strain PNUSAS389862 SAMN37767652-rid19674253.guided.21, whole genome shotgun sequence	8809..9246	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSET010000008.1	192373..193241	99.195	870	0						
GCA_032618295.1_PDT001924560.1_genomic.fna	Salmonella_enterica	0.5202	223.58 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaTEM-1B,blaCMY-2,blaTEM-1B,floR,floR,qnrS1,qnrS1,sul2,sul2,tet(B),tet(B),tet(A),tet(A),tet(A),tet(A)	0		3	Col156,IncI1-I(Alpha),p0111	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSEV010000002.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.denovo.02, whole genome shotgun sequence	77668..78105	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNSEV010000050.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.denovo.57, whole genome shotgun sequence	1233..2063	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	ABNSEV010000050.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.denovo.57, whole genome shotgun sequence	2069..2872	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNSEV010000070.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.guided.41, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNSEV010000072.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.guided.55, whole genome shotgun sequence	878..1708	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	ABNSEV010000072.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.guided.55, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNSEV010000021.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.denovo.21, whole genome shotgun sequence	30644..31789	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-1B	100	861/861	ABNSEV010000050.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.denovo.57, whole genome shotgun sequence	142..1002	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNSEV010000071.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.guided.46, whole genome shotgun sequence	2323..3468	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-1B	100	861/861	ABNSEV010000072.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.guided.55, whole genome shotgun sequence	1939..2799	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.11	1214/1215	ABNSEV010000054.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.denovo.64, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNSEV010000076.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.guided.63, whole genome shotgun sequence	476..1689	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNSEV010000043.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.denovo.48, whole genome shotgun sequence	3649..4305	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNSEV010000073.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.guided.56, whole genome shotgun sequence	1042..1698	Ciprofloxacin	AB187515	sul2	100	805/816	ABNSEV010000060.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.denovo.73, whole genome shotgun sequence	12..816	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNSEV010000079.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.guided.71, whole genome shotgun sequence	11..826	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNSEV010000024.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.denovo.24, whole genome shotgun sequence	63546..64751	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSEV010000069.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.guided.40, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	99.92	1200/1200	ABNSEV010000074.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.guided.61, whole genome shotgun sequence	650..1849	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSEV010000075.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.guided.62, whole genome shotgun sequence	650..1849	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1275/1275	ABNSEV010000077.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.guided.65, whole genome shotgun sequence	575..1849	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNSEV010000078.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.guided.66, whole genome shotgun sequence	575..1849	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col156	96.1	154 / 154	ABNSEV010000045.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.denovo.50, whole genome shotgun sequence	965..1118	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNSEV010000036.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.denovo.37, whole genome shotgun sequence	3835..3976		enterobacteriales	p0111	98.64	885 / 885	ABNSEV010000031.1 Salmonella enterica strain PNUSAS389847 SAMN37767678-rid19672913.denovo.31, whole genome shotgun sequence	37168..38052																																									avrA	ABNSEV010000001.1	540774..541643	99.885	870	0						
GCA_032618315.1_PDT001924561.1_genomic.fna	Salmonella_enterica	0.5212	242.26 KB	6	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNSEU010000003.1 Salmonella enterica strain PNUSAS389865 SAMN37767646-rid19672923.denovo.03, whole genome shotgun sequence	286754..287191	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNSEU010000049.1 Salmonella enterica strain PNUSAS389865 SAMN37767646-rid19672923.guided.42, whole genome shotgun sequence	1286..1723	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNSEU010000050.1 Salmonella enterica strain PNUSAS389865 SAMN37767646-rid19672923.guided.43, whole genome shotgun sequence	1286..1723	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSEU010000001.1	594794..595663	99.77	870	0						
GCA_032618335.1_PDT001924559.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSEW010000001.1 Salmonella enterica strain PNUSAS389846 SAMN37767677-rid19672903.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSEW010000023.1 Salmonella enterica strain PNUSAS389846 SAMN37767677-rid19672903.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSEW010000013.1 Salmonella enterica strain PNUSAS389846 SAMN37767677-rid19672903.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNSEW010000013.1 Salmonella enterica strain PNUSAS389846 SAMN37767677-rid19672903.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNSEW010000002.1	553636..554505	99.54	870	0						
GCA_032618355.1_PDT001924558.1_genomic.fna	Salmonella_enterica	0.5212	696.113 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSEX010000001.1 Salmonella enterica strain PNUSAS389842 SAMN37767679-rid19675183.denovo.01, whole genome shotgun sequence	646145..646582	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSEX010000016.1 Salmonella enterica strain PNUSAS389842 SAMN37767679-rid19675183.guided.14, whole genome shotgun sequence	4705..5142	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032618375.1_PDT001924557.1_genomic.fna	Salmonella_enterica	0.5214	304.38 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSEY010000001.1 Salmonella enterica strain PNUSAS389867 SAMN37767655-rid19674243.denovo.01, whole genome shotgun sequence	706583..707020	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSEY010000029.1 Salmonella enterica strain PNUSAS389867 SAMN37767655-rid19674243.guided.25, whole genome shotgun sequence	211..648	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSEY010000020.1 Salmonella enterica strain PNUSAS389867 SAMN37767655-rid19674243.denovo.20, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNSEY010000021.1 Salmonella enterica strain PNUSAS389867 SAMN37767655-rid19674243.denovo.23, whole genome shotgun sequence	3403..3664																																																avrA	ABNSEY010000006.1	175197..176066	99.54	870	0						
GCA_032618395.1_PDT001924555.1_genomic.fna	Salmonella_enterica	0.5219	393.033 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNSEZ010000001.1 Salmonella enterica strain PNUSAS389872 SAMN37767649-rid19672893.denovo.01, whole genome shotgun sequence	486997..487434	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNSEZ010000023.1 Salmonella enterica strain PNUSAS389872 SAMN37767649-rid19672893.guided.20, whole genome shotgun sequence	3594..4031	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSEZ010000007.1	173492..174360	99.425	870	0						
GCA_032618415.1_PDT001924556.1_genomic.fna	Salmonella_enterica	0.5198	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNSFA010000010.1 Salmonella enterica strain PNUSAS389875 SAMN37767650-rid19674233.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNSFA010000060.1 Salmonella enterica strain PNUSAS389875 SAMN37767650-rid19674233.guided.38, whole genome shotgun sequence	5187..5621	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032618455.1_PDT001924553.1_genomic.fna	Salmonella_enterica	0.5214	375.734 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSFC010000001.1 Salmonella enterica strain PNUSAS389864 SAMN37767656-rid19675173.denovo.01, whole genome shotgun sequence	176096..176533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.17	418/438	ABNSFC010000033.1 Salmonella enterica strain PNUSAS389864 SAMN37767656-rid19675173.guided.31, whole genome shotgun sequence	1..418	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSFC010000023.1 Salmonella enterica strain PNUSAS389864 SAMN37767656-rid19675173.denovo.23, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNSFC010000024.1 Salmonella enterica strain PNUSAS389864 SAMN37767656-rid19675173.denovo.26, whole genome shotgun sequence	3378..3639																																																avrA	ABNSFC010000002.1	553636..554505	99.54	870	0						
GCA_032618475.1_PDT001924552.1_genomic.fna	Salmonella_enterica	0.5218	393.033 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNSFD010000001.1 Salmonella enterica strain PNUSAS389880 SAMN37767648-rid19674213.denovo.01, whole genome shotgun sequence	486997..487434	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNSFD010000025.1 Salmonella enterica strain PNUSAS389880 SAMN37767648-rid19674213.guided.23, whole genome shotgun sequence	3579..4016	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSFD010000006.1	173492..174360	99.425	870	0						
GCA_032618515.1_PDT001924549.1_genomic.fna	Salmonella_enterica	0.522	341.367 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSFG010000004.1 Salmonella enterica strain PNUSAS389873 SAMN37767653-rid19672863.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNSFG010000045.1 Salmonella enterica strain PNUSAS389873 SAMN37767653-rid19672863.guided.31, whole genome shotgun sequence	13085..13522	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSFG010000015.1 Salmonella enterica strain PNUSAS389873 SAMN37767653-rid19672863.denovo.15, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNSFG010000015.1 Salmonella enterica strain PNUSAS389873 SAMN37767653-rid19672863.denovo.15, whole genome shotgun sequence	22559..22820																																																avrA	ABNSFG010000001.1	401510..402378	100	869	0						
GCA_032618525.1_PDT001924550.1_genomic.fna	Salmonella_enterica	0.522	510.015 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSFF010000001.1 Salmonella enterica strain PNUSAS389844 SAMN37767680-rid19672873.denovo.01, whole genome shotgun sequence	721614..722051	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSFF010000025.1 Salmonella enterica strain PNUSAS389844 SAMN37767680-rid19672873.guided.17, whole genome shotgun sequence	10047..10484	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSFF010000003.1	109070..109939	99.77	870	0						
GCA_032618595.1_PDT001924548.1_genomic.fna	Salmonella_enterica	0.5202	153.395 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNSFH010000008.1 Salmonella enterica strain PNUSAS389863 SAMN37767651-rid19675163.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNSFH010000059.1 Salmonella enterica strain PNUSAS389863 SAMN37767651-rid19675163.guided.46, whole genome shotgun sequence	5858..6292	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032618635.1_PDT001924546.1_genomic.fna	Salmonella_enterica	0.5217	446.703 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSFJ010000001.1 Salmonella enterica strain PNUSAS389845 SAMN37767676-rid19674193.denovo.01, whole genome shotgun sequence	372891..373328	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSFJ010000027.1 Salmonella enterica strain PNUSAS389845 SAMN37767676-rid19674193.guided.18, whole genome shotgun sequence	9650..10087	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSFJ010000003.1	109070..109939	99.77	870	0						
GCA_032618655.1_PDT001924544.1_genomic.fna	Salmonella_enterica	0.5218	365.034 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSFL010000001.1 Salmonella enterica strain PNUSAS389871 SAMN37767647-rid19674183.denovo.01, whole genome shotgun sequence	498138..498575	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSFL010000033.1 Salmonella enterica strain PNUSAS389871 SAMN37767647-rid19674183.guided.25, whole genome shotgun sequence	15310..15747	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSFL010000009.1	140447..141316	99.54	870	0						
GCA_032618675.1_PDT001924545.1_genomic.fna	Salmonella_enterica	0.5214	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSFK010000001.1 Salmonella enterica strain PNUSAS389866 SAMN37767654-rid19672853.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSFK010000023.1 Salmonella enterica strain PNUSAS389866 SAMN37767654-rid19672853.guided.20, whole genome shotgun sequence	1647..2084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSFK010000016.1 Salmonella enterica strain PNUSAS389866 SAMN37767654-rid19672853.denovo.16, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNSFK010000013.1 Salmonella enterica strain PNUSAS389866 SAMN37767654-rid19672853.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNSFK010000002.1	553636..554505	99.54	870	0						
GCA_032618695.1_PDT001924543.1_genomic.fna	Salmonella_enterica	0.522	244.38 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSFM010000001.1 Salmonella enterica strain PNUSAS389869 SAMN37767645-rid19675153.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNSFM010000039.1 Salmonella enterica strain PNUSAS389869 SAMN37767645-rid19675153.guided.27, whole genome shotgun sequence	20631..21068	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSFM010000002.1	149828..150697	99.655	870	0						
GCA_032618855.1_PDT001924529.1_genomic.fna	Salmonella_enterica	0.5213	424.031 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQDQV010000002.1 TPA_asm: Salmonella enterica strain GT24-0091 SAMN37767287-rid19672803.denovo.02, whole genome shotgun sequence	136206..136643	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQDQV010000039.1 TPA_asm: Salmonella enterica strain GT24-0091 SAMN37767287-rid19672803.guided.21, whole genome shotgun sequence	8082..8519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQDQV010000010.1	101941..102810	99.655	870	0						
GCA_032619515.1_PDT001924498.1_genomic.fna	Salmonella_enterica	0.5205	489.916 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSGR010000001.1 Salmonella enterica strain PNUSAS389654 SAMN37767030-rid19672713.denovo.01, whole genome shotgun sequence	898864..899301	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSGR010000022.1 Salmonella enterica strain PNUSAS389654 SAMN37767030-rid19672713.guided.12, whole genome shotgun sequence	36767..37204	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSGR010000016.1 Salmonella enterica strain PNUSAS389654 SAMN37767030-rid19672713.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNSGR010000017.1 Salmonella enterica strain PNUSAS389654 SAMN37767030-rid19672713.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABNSGR010000002.1	584135..585004	99.54	870	0						
GCA_032619535.1_PDT001924497.1_genomic.fna	Salmonella_enterica	0.5222	719.072 KB	2	aroC_50,dnaN_63,hemD_25,hisD_72,purE_59,sucA_292,thrA_63	1515	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_63	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_59	sucA	100	100	sucA_292	thrA	100	100	thrA_63	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSGS010000001.1 Salmonella enterica strain PNUSAS389657 SAMN37767033-rid19674023.denovo.01, whole genome shotgun sequence	644184..644621	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSGS010000016.1 Salmonella enterica strain PNUSAS389657 SAMN37767033-rid19674023.guided.12, whole genome shotgun sequence	13744..14181	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSGS010000003.1	553395..554264	99.425	870	0						
GCA_032619555.1_PDT001924496.1_genomic.fna	Salmonella_enterica	0.5197	271.79 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul2,sul3,sul2,sul3,tet(B),tet(B)	0		3	Col440I,IncC,IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSGT010000001.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.denovo.01, whole genome shotgun sequence	584086..584523	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSGT010000035.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.denovo.40, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSGT010000035.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.denovo.40, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNSGT010000047.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.denovo.55, whole genome shotgun sequence	136..951	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	V00359	aac(6')-Iaa	100	438/438	ABNSGT010000053.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.guided.11, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSGT010000057.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.guided.39, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSGT010000057.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.guided.39, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNSGT010000060.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.guided.54, whole genome shotgun sequence	129..944	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	V00359	blaTEM-1B	100	861/861	ABNSGT010000045.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.denovo.52, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNSGT010000059.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.guided.51, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNSGT010000035.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.denovo.40, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNSGT010000036.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.denovo.42, whole genome shotgun sequence	1407..2198	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNSGT010000057.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.guided.39, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNSGT010000058.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.guided.41, whole genome shotgun sequence	2060..2851	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNSGT010000031.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.denovo.34, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSGT010000056.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.guided.35, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	Col440I	93.81	113 / 114	ABNSGT010000038.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.denovo.44, whole genome shotgun sequence	2528..2639	enterobacteriales	IncC	100	417 / 417	ABNSGT010000017.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.denovo.18, whole genome shotgun sequence	52353..52769		enterobacteriales	IncY	99.74	765 / 765	ABNSGT010000015.1 Salmonella enterica strain PNUSAS389651 SAMN37767029-rid19674993.denovo.16, whole genome shotgun sequence	65077..65841																																									avrA	ABNSGT010000002.1	541191..542060	99.885	870	0						
GCA_032619575.1_PDT001924495.1_genomic.fna	Salmonella_enterica	0.5185	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	2	acrB_p.R717L,gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNSGW010000012.1 Salmonella enterica strain PNUSAS389647 SAMN37767032-rid19672703.denovo.12, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNSGW010000055.1 Salmonella enterica strain PNUSAS389647 SAMN37767032-rid19672703.guided.37, whole genome shotgun sequence	2174..2608	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										acrB p.R717L	CGA -> CTA	R -> L	Azithromycin	-	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																	
GCA_032619595.1_PDT001924494.1_genomic.fna	Salmonella_enterica	0.5211	489.853 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSGV010000001.1 Salmonella enterica strain PNUSAS389655 SAMN37767028-rid19672693.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSGV010000024.1 Salmonella enterica strain PNUSAS389655 SAMN37767028-rid19672693.guided.16, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSGV010000015.1 Salmonella enterica strain PNUSAS389655 SAMN37767028-rid19672693.denovo.17, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABNSGV010000016.1 Salmonella enterica strain PNUSAS389655 SAMN37767028-rid19672693.denovo.19, whole genome shotgun sequence	3402..3663																																																avrA	ABNSGV010000002.1	553187..554056	99.54	870	0						
GCA_032619615.1_PDT001924493.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSGX010000001.1 Salmonella enterica strain PNUSAS389656 SAMN37767031-rid19672683.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSGX010000020.1 Salmonella enterica strain PNUSAS389656 SAMN37767031-rid19672683.guided.13, whole genome shotgun sequence	20578..21015	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSGX010000015.1 Salmonella enterica strain PNUSAS389656 SAMN37767031-rid19672683.denovo.17, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNSGX010000016.1 Salmonella enterica strain PNUSAS389656 SAMN37767031-rid19672683.denovo.19, whole genome shotgun sequence	3391..3652																																																avrA	ABNSGX010000002.1	553635..554504	99.54	870	0						
GCA_032619635.1_PDT001924492.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSGU010000001.1 Salmonella enterica strain PNUSAS389758 SAMN37767023-rid19674013.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSGU010000029.1 Salmonella enterica strain PNUSAS389758 SAMN37767023-rid19674013.guided.19, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSGU010000016.1 Salmonella enterica strain PNUSAS389758 SAMN37767023-rid19674013.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNSGU010000018.1 Salmonella enterica strain PNUSAS389758 SAMN37767023-rid19674013.denovo.21, whole genome shotgun sequence	3423..3684																																																avrA	ABNSGU010000002.1	553636..554505	99.54	870	0						
GCA_032620055.1_PDT001924468.1_genomic.fna	Salmonella_enterica	0.5213	477.515 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSHU010000001.1 Salmonella enterica strain PNUSAS389650 SAMN37767021-rid19672573.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSHU010000017.1 Salmonella enterica strain PNUSAS389650 SAMN37767021-rid19672573.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABNSHU010000002.1	553636..554505	99.54	870	0						
GCA_032620095.1_PDT001924467.1_genomic.fna	Salmonella_enterica	0.5213	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSHT010000001.1 Salmonella enterica strain PNUSAS389649 SAMN37767020-rid19673913.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSHT010000026.1 Salmonella enterica strain PNUSAS389649 SAMN37767020-rid19673913.guided.19, whole genome shotgun sequence	8856..9293	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSHT010000018.1 Salmonella enterica strain PNUSAS389649 SAMN37767020-rid19673913.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNSHT010000019.1 Salmonella enterica strain PNUSAS389649 SAMN37767020-rid19673913.denovo.22, whole genome shotgun sequence	3308..3569																																																avrA	ABNSHT010000002.1	553187..554056	99.54	870	0						
GCA_032620135.1_PDT001924466.1_genomic.fna	Salmonella_enterica	0.5214	406.388 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSHV010000001.1 Salmonella enterica strain PNUSAS389648 SAMN37767022-rid19674943.denovo.01, whole genome shotgun sequence	774495..774932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSHV010000027.1 Salmonella enterica strain PNUSAS389648 SAMN37767022-rid19674943.guided.22, whole genome shotgun sequence	8044..8481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSHV010000019.1 Salmonella enterica strain PNUSAS389648 SAMN37767022-rid19674943.denovo.20, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNSHV010000020.1 Salmonella enterica strain PNUSAS389648 SAMN37767022-rid19674943.denovo.23, whole genome shotgun sequence	3398..3659																																																avrA	ABNSHV010000002.1	553624..554493	99.54	870	0						
GCA_032620335.1_PDT001924455.1_genomic.fna	Salmonella_enterica	0.5213	225.556 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSIE010000001.1 Salmonella enterica strain PNUSAS389658 SAMN37766983-rid19673853.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNSIE010000053.1 Salmonella enterica strain PNUSAS389658 SAMN37766983-rid19673853.guided.40, whole genome shotgun sequence	1422..1859	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSIE010000016.1 Salmonella enterica strain PNUSAS389658 SAMN37766983-rid19673853.denovo.16, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNSIE010000016.1 Salmonella enterica strain PNUSAS389658 SAMN37766983-rid19673853.denovo.16, whole genome shotgun sequence	22559..22820																																																avrA	ABNSIE010000003.1	174500..175368	100	869	0						
GCA_032620485.1_PDT001924444.1_genomic.fna	Salmonella_enterica	0.5207	222.649 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSIM010000001.1 Salmonella enterica strain PNUSAS389662 SAMN37766544-rid19672503.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNSIM010000051.1 Salmonella enterica strain PNUSAS389662 SAMN37766544-rid19672503.guided.28, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSIM010000017.1 Salmonella enterica strain PNUSAS389662 SAMN37766544-rid19672503.denovo.17, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNSIM010000017.1 Salmonella enterica strain PNUSAS389662 SAMN37766544-rid19672503.denovo.17, whole genome shotgun sequence	30407..30668																																																avrA	ABNSIM010000003.1	174500..175368	100	869	0						
GCA_032620615.1_PDT001924434.1_genomic.fna	Salmonella_enterica	0.5209	204.859 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSIT010000003.1 Salmonella enterica strain PNUSAS389638 SAMN37766520-rid19673743.denovo.03, whole genome shotgun sequence	162385..162822	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNSIT010000025.1 Salmonella enterica strain PNUSAS389638 SAMN37766520-rid19673743.denovo.25, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNSIT010000046.1 Salmonella enterica strain PNUSAS389638 SAMN37766520-rid19673743.guided.30, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNSIT010000052.1 Salmonella enterica strain PNUSAS389638 SAMN37766520-rid19673743.guided.51, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNSIT010000038.1 Salmonella enterica strain PNUSAS389638 SAMN37766520-rid19673743.denovo.41, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNSIT010000051.1 Salmonella enterica strain PNUSAS389638 SAMN37766520-rid19673743.guided.50, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNSIT010000038.1 Salmonella enterica strain PNUSAS389638 SAMN37766520-rid19673743.denovo.41, whole genome shotgun sequence	6603..7817	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNSIT010000049.1 Salmonella enterica strain PNUSAS389638 SAMN37766520-rid19673743.guided.43, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNSIT010000050.1 Salmonella enterica strain PNUSAS389638 SAMN37766520-rid19673743.guided.47, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNSIT010000038.1 Salmonella enterica strain PNUSAS389638 SAMN37766520-rid19673743.denovo.41, whole genome shotgun sequence	4491..5666	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNSIT010000049.1 Salmonella enterica strain PNUSAS389638 SAMN37766520-rid19673743.guided.43, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	Col440I	92.04	113 / 114	ABNSIT010000042.1 Salmonella enterica strain PNUSAS389638 SAMN37766520-rid19673743.denovo.46, whole genome shotgun sequence	1334..1446	enterobacteriales	IncFIB(S)	100	643 / 643	ABNSIT010000024.1 Salmonella enterica strain PNUSAS389638 SAMN37766520-rid19673743.denovo.24, whole genome shotgun sequence	36050..36692		enterobacteriales	IncFII(S)	100	262 / 262	ABNSIT010000024.1 Salmonella enterica strain PNUSAS389638 SAMN37766520-rid19673743.denovo.24, whole genome shotgun sequence	51777..52038																																									avrA	ABNSIT010000001.1	506657..507526	99.885	870	0						
GCA_032620635.1_PDT001924432.1_genomic.fna	Salmonella_enterica	0.5221	625.939 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNSIV010000001.1 Salmonella enterica strain PNUSAS389645 SAMN37766522-rid19672463.denovo.01, whole genome shotgun sequence	639135..639572	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNSIV010000021.1 Salmonella enterica strain PNUSAS389645 SAMN37766522-rid19672463.guided.18, whole genome shotgun sequence	8088..8525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNSIV010000002.1	507768..508637	99.77	870	0						
GCA_032620655.1_PDT001924433.1_genomic.fna	Salmonella_enterica	0.521	451.255 KB	3	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	13	aac(6')-Iaa,aadA7,aac(3)-Id,aph(6)-Id,aph(3'')-Ib,aadA1,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA7,aac(3)-Id,aadA7,aac(3)-Id,aph(3')-Ia,aadA1,blaCTX-M-14b,blaCTX-M-14b,erm(B),erm(42),erm(B),erm(42),floR,floR,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87G,parC_p.T57S,parC_p.S80I	3	Col156,ColRNAI,IncX1	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSIU010000001.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.denovo.01, whole genome shotgun sequence	987825..988262	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	ABNSIU010000015.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.denovo.18, whole genome shotgun sequence	12816..13613	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	ABNSIU010000015.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.denovo.18, whole genome shotgun sequence	13689..14165	Gentamicin, Astromicin, Fortimicin	AB114632	aph(6)-Id	100	837/837	ABNSIU010000025.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.denovo.32, whole genome shotgun sequence	505..1341	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSIU010000025.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.denovo.32, whole genome shotgun sequence	1341..2144	Streptomycin	AF321551	aadA1	100	792/792	ABNSIU010000030.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.denovo.41, whole genome shotgun sequence	175..966	Spectinomycin, Streptomycin	FJ591054	aph(3')-Ia	100	816/816	ABNSIU010000031.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.denovo.43, whole genome shotgun sequence	128..943	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aac(6')-Iaa	98.63	438/438	ABNSIU010000037.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.guided.14, whole genome shotgun sequence	15906..16343	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSIU010000042.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.guided.31, whole genome shotgun sequence	2104..2940	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSIU010000042.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.guided.31, whole genome shotgun sequence	1301..2104	Streptomycin	AF321551	aadA7	99.87	798/798	ABNSIU010000045.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.guided.39, whole genome shotgun sequence	610..1407	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	ABNSIU010000045.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.guided.39, whole genome shotgun sequence	58..534	Gentamicin, Astromicin, Fortimicin	AB114632	aadA7	100	798/798	ABNSIU010000046.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.guided.40, whole genome shotgun sequence	610..1407	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	ABNSIU010000046.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.guided.40, whole genome shotgun sequence	58..534	Gentamicin, Astromicin, Fortimicin	AB114632	aph(3')-Ia	100	816/816	ABNSIU010000047.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.guided.42, whole genome shotgun sequence	106..921	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aadA1	100	792/792	ABNSIU010000048.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.guided.44, whole genome shotgun sequence	46..837	Spectinomycin, Streptomycin	FJ591054	blaCTX-M-14b	100	876/876	ABNSIU010000005.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.denovo.05, whole genome shotgun sequence	308938..309813	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ359215	blaCTX-M-14b	100	876/876	ABNSIU010000043.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.guided.35, whole genome shotgun sequence	1303..2178	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ359215	erm(B)	99.86	738/738	ABNSIU010000024.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.denovo.29, whole genome shotgun sequence	1222..1959	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	JN899585	erm(42)	99.89	912/912	ABNSIU010000029.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.denovo.38, whole genome shotgun sequence	519..1430	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	AB601890	erm(B)	99.86	738/738	ABNSIU010000040.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.guided.28, whole genome shotgun sequence	1263..2000	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	JN899585	erm(42)	99.89	912/912	ABNSIU010000044.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.guided.37, whole genome shotgun sequence	482..1393	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	AB601890	floR	98.11	1214/1215	ABNSIU010000019.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.denovo.23, whole genome shotgun sequence	719..1932	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNSIU010000041.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.guided.30, whole genome shotgun sequence	1938..3151	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNSIU010000015.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.denovo.18, whole genome shotgun sequence	11472..12311	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSIU010000039.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.guided.20, whole genome shotgun sequence	399..1238	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSIU010000015.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.denovo.18, whole genome shotgun sequence	3214..4413	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSIU010000039.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.guided.20, whole genome shotgun sequence	8297..9496	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																				gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	Col156	97.37	152 / 154	ABNSIU010000022.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.denovo.26, whole genome shotgun sequence	967..1118	enterobacteriales	ColRNAI	90.91	132 / 130	ABNSIU010000023.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.denovo.27, whole genome shotgun sequence	1305..1435		enterobacteriales	IncX1	98.13	374 / 374	ABNSIU010000016.1 Salmonella enterica strain PNUSAS389640 SAMN37766521-rid19672473.denovo.19, whole genome shotgun sequence	5526..5899																																									avrA	ABNSIU010000003.1	144387..145256	99.31	870	0						
GCA_032620675.1_PDT001924431.1_genomic.fna	Salmonella_enterica	0.5221	698.855 KB	3	aroC_50,dnaN_63,hemD_25,hisD_72,purE_59,sucA_292,thrA_63	1515	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_63	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_59	sucA	100	100	sucA_292	thrA	100	100	thrA_63	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSIW010000001.1 Salmonella enterica strain PNUSAS389639 SAMN37766518-rid19674873.denovo.01, whole genome shotgun sequence	416681..417118	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSIW010000022.1 Salmonella enterica strain PNUSAS389639 SAMN37766518-rid19674873.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSIW010000003.1	553395..554264	99.425	870	0						
GCA_032620715.1_PDT001924430.1_genomic.fna	Salmonella_enterica	0.5212	455.616 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSIY010000005.1 Salmonella enterica strain PNUSAS389642 SAMN37766519-rid19673733.denovo.05, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSIY010000026.1 Salmonella enterica strain PNUSAS389642 SAMN37766519-rid19673733.guided.16, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSIY010000016.1 Salmonella enterica strain PNUSAS389642 SAMN37766519-rid19673733.denovo.17, whole genome shotgun sequence	48513..49155	enterobacteriales	IncFII(S)	100	262 / 262	ABNSIY010000016.1 Salmonella enterica strain PNUSAS389642 SAMN37766519-rid19673733.denovo.17, whole genome shotgun sequence	4260..4521																																																avrA	ABNSIY010000001.1	585486..586355	99.54	870	0						
GCA_032620735.1_PDT001924428.1_genomic.fna	Salmonella_enterica	0.521	204.039 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSIZ010000002.1 Salmonella enterica strain PNUSAS389661 SAMN37766512-rid19672453.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNSIZ010000063.1 Salmonella enterica strain PNUSAS389661 SAMN37766512-rid19672453.guided.25, whole genome shotgun sequence	38792..39229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSIZ010000023.1 Salmonella enterica strain PNUSAS389661 SAMN37766512-rid19672453.denovo.23, whole genome shotgun sequence	44772..45414	enterobacteriales	IncFII(S)	100	262 / 262	ABNSIZ010000023.1 Salmonella enterica strain PNUSAS389661 SAMN37766512-rid19672453.denovo.23, whole genome shotgun sequence	29426..29687																																																avrA	ABNSIZ010000003.1	174500..175368	100	869	0						
GCA_032620755.1_PDT001924427.1_genomic.fna	Salmonella_enterica	0.5212	184.819 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSJA010000001.1 Salmonella enterica strain PNUSAS389660 SAMN37766513-rid19673713.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNSJA010000057.1 Salmonella enterica strain PNUSAS389660 SAMN37766513-rid19673713.guided.40, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSJA010000019.1 Salmonella enterica strain PNUSAS389660 SAMN37766513-rid19673713.denovo.19, whole genome shotgun sequence	48418..49060	enterobacteriales	IncFII(S)	100	262 / 262	ABNSJA010000019.1 Salmonella enterica strain PNUSAS389660 SAMN37766513-rid19673713.denovo.19, whole genome shotgun sequence	64145..64406																																																avrA	ABNSJA010000007.1	174651..175519	100	869	0						
GCA_032620775.1_PDT001924426.1_genomic.fna	Salmonella_enterica	0.5208	497.421 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSJB010000002.1 Salmonella enterica strain PNUSAS389643 SAMN37766516-rid19674863.denovo.02, whole genome shotgun sequence	455410..455847	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSJB010000022.1 Salmonella enterica strain PNUSAS389643 SAMN37766516-rid19674863.guided.15, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032620795.1_PDT001924424.1_genomic.fna	Salmonella_enterica	0.5205	283.015 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		4	IncFIB(S),IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSJD010000001.1 Salmonella enterica strain PNUSAS389659 SAMN37766514-rid19673693.denovo.01, whole genome shotgun sequence	293266..293703	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSJD010000023.1 Salmonella enterica strain PNUSAS389659 SAMN37766514-rid19673693.denovo.27, whole genome shotgun sequence	9260..10096	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSJD010000023.1 Salmonella enterica strain PNUSAS389659 SAMN37766514-rid19673693.denovo.27, whole genome shotgun sequence	10096..10899	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNSJD010000038.1 Salmonella enterica strain PNUSAS389659 SAMN37766514-rid19673693.guided.23, whole genome shotgun sequence	12448..12885	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSJD010000040.1 Salmonella enterica strain PNUSAS389659 SAMN37766514-rid19673693.guided.26, whole genome shotgun sequence	7213..8049	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSJD010000040.1 Salmonella enterica strain PNUSAS389659 SAMN37766514-rid19673693.guided.26, whole genome shotgun sequence	6410..7213	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNSJD010000028.1 Salmonella enterica strain PNUSAS389659 SAMN37766514-rid19673693.denovo.32, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNSJD010000041.1 Salmonella enterica strain PNUSAS389659 SAMN37766514-rid19673693.guided.36, whole genome shotgun sequence	854..1714	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNSJD010000023.1 Salmonella enterica strain PNUSAS389659 SAMN37766514-rid19673693.denovo.27, whole genome shotgun sequence	10960..11775	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNSJD010000040.1 Salmonella enterica strain PNUSAS389659 SAMN37766514-rid19673693.guided.26, whole genome shotgun sequence	5534..6349	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNSJD010000023.1 Salmonella enterica strain PNUSAS389659 SAMN37766514-rid19673693.denovo.27, whole genome shotgun sequence	15288..16487	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSJD010000040.1 Salmonella enterica strain PNUSAS389659 SAMN37766514-rid19673693.guided.26, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSJD010000024.1 Salmonella enterica strain PNUSAS389659 SAMN37766514-rid19673693.denovo.28, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNSJD010000027.1 Salmonella enterica strain PNUSAS389659 SAMN37766514-rid19673693.denovo.31, whole genome shotgun sequence	3403..3664		enterobacteriales	IncN	100	514 / 514	ABNSJD010000025.1 Salmonella enterica strain PNUSAS389659 SAMN37766514-rid19673693.denovo.29, whole genome shotgun sequence	459..972		enterobacteriales	IncX1	98.66	374 / 374	ABNSJD010000018.1 Salmonella enterica strain PNUSAS389659 SAMN37766514-rid19673693.denovo.19, whole genome shotgun sequence	6057..6430																																		avrA	ABNSJD010000002.1	552631..553500	99.54	870	0						
GCA_032620815.1_PDT001924425.1_genomic.fna	Salmonella_enterica	0.521	322.099 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSJC010000001.1 Salmonella enterica strain PNUSAS389641 SAMN37766515-rid19673703.denovo.01, whole genome shotgun sequence	458967..459404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNSJC010000043.1 Salmonella enterica strain PNUSAS389641 SAMN37766515-rid19673703.guided.19, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSJC010000029.1 Salmonella enterica strain PNUSAS389641 SAMN37766515-rid19673703.denovo.30, whole genome shotgun sequence	24689..25331	enterobacteriales	IncFII(S)	100	262 / 262	ABNSJC010000029.1 Salmonella enterica strain PNUSAS389641 SAMN37766515-rid19673703.denovo.30, whole genome shotgun sequence	9343..9604																																																avrA	ABNSJC010000003.1	209356..210225	99.885	870	0						
GCA_032620835.1_PDT001924423.1_genomic.fna	Salmonella_enterica	0.5125	189.463 KB	6	aroC_65,dnaN_451,hemD_29,hisD_312,purE_20,sucA_26,thrA_60	2765	48:g,z51:-	0		1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_65	dnaN	100	100	dnaN_451	hemD	100	100	hemD_29	hisD	100	100	hisD_312	purE	100	100	purE_20	sucA	100	100	sucA_26	thrA	100	100	thrA_60	48	g,z51	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 48:g,z51:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABNSJE010000021.1 Salmonella enterica strain PNUSAS389644 SAMN37766517-rid19672443.denovo.22, whole genome shotgun sequence	3653..3914																																																																	
GCA_032620895.1_PDT001924421.1_genomic.fna	Salmonella_enterica	0.5206	203.759 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSJF010000001.1 Salmonella enterica strain 23SD06CH01-S1 SAMN37766226-rid19674853.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSJF010000029.1 Salmonella enterica strain 23SD06CH01-S1 SAMN37766226-rid19674853.denovo.32, whole genome shotgun sequence	23219..24010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSJF010000029.1 Salmonella enterica strain 23SD06CH01-S1 SAMN37766226-rid19674853.denovo.32, whole genome shotgun sequence	23219..24010	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNSJF010000052.1 Salmonella enterica strain 23SD06CH01-S1 SAMN37766226-rid19674853.guided.21, whole genome shotgun sequence	36883..37320	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSJF010000054.1 Salmonella enterica strain 23SD06CH01-S1 SAMN37766226-rid19674853.guided.37, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSJF010000054.1 Salmonella enterica strain 23SD06CH01-S1 SAMN37766226-rid19674853.guided.37, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNSJF010000029.1 Salmonella enterica strain 23SD06CH01-S1 SAMN37766226-rid19674853.denovo.32, whole genome shotgun sequence	21875..22714	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSJF010000054.1 Salmonella enterica strain 23SD06CH01-S1 SAMN37766226-rid19674853.guided.37, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSJF010000029.1 Salmonella enterica strain 23SD06CH01-S1 SAMN37766226-rid19674853.denovo.32, whole genome shotgun sequence	8159..9358	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSJF010000055.1 Salmonella enterica strain 23SD06CH01-S1 SAMN37766226-rid19674853.guided.38, whole genome shotgun sequence	4331..5530	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSJF010000015.1 Salmonella enterica strain 23SD06CH01-S1 SAMN37766226-rid19674853.denovo.15, whole genome shotgun sequence	77541..78100	enterobacteriales	IncX1	98.93	374 / 374	ABNSJF010000023.1 Salmonella enterica strain 23SD06CH01-S1 SAMN37766226-rid19674853.denovo.25, whole genome shotgun sequence	7449..7822																																																avrA	ABNSJF010000002.1	149828..150697	99.655	870	0						
GCA_032620955.1_PDT001924420.1_genomic.fna	Salmonella_enterica	0.5218	201.537 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSJH010000001.1 Salmonella enterica strain 23SD07CL01-S1 SAMN37766238-rid19673673.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSJH010000029.1 Salmonella enterica strain 23SD07CL01-S1 SAMN37766238-rid19673673.denovo.29, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSJH010000029.1 Salmonella enterica strain 23SD07CL01-S1 SAMN37766238-rid19673673.denovo.29, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNSJH010000054.1 Salmonella enterica strain 23SD07CL01-S1 SAMN37766238-rid19673673.guided.45, whole genome shotgun sequence	1031..1468	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSJH010000056.1 Salmonella enterica strain 23SD07CL01-S1 SAMN37766238-rid19673673.guided.48, whole genome shotgun sequence	687..1478	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSJH010000056.1 Salmonella enterica strain 23SD07CL01-S1 SAMN37766238-rid19673673.guided.48, whole genome shotgun sequence	687..1478	Spectinomycin, Streptomycin	JQ414041	fosA3	100	417/417	ABNSJH010000044.1 Salmonella enterica strain 23SD07CL01-S1 SAMN37766238-rid19673673.denovo.47, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABNSJH010000055.1 Salmonella enterica strain 23SD07CL01-S1 SAMN37766238-rid19673673.guided.46, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABNSJH010000029.1 Salmonella enterica strain 23SD07CL01-S1 SAMN37766238-rid19673673.denovo.29, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSJH010000059.1 Salmonella enterica strain 23SD07CL01-S1 SAMN37766238-rid19673673.guided.52, whole genome shotgun sequence	531..1370	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSJH010000029.1 Salmonella enterica strain 23SD07CL01-S1 SAMN37766238-rid19673673.denovo.29, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSJH010000058.1 Salmonella enterica strain 23SD07CL01-S1 SAMN37766238-rid19673673.guided.51, whole genome shotgun sequence	506..1705	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSJH010000034.1 Salmonella enterica strain 23SD07CL01-S1 SAMN37766238-rid19673673.denovo.34, whole genome shotgun sequence	9109..9668																																																						avrA	ABNSJH010000003.1	149551..150420	99.655	870	0						
GCA_032621155.1_PDT001924387.1_genomic.fna	Salmonella_enterica	0.5204	379.816 KB	5	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNSJU010000001.1 Salmonella enterica subsp. enterica serovar Muenchen strain SAL-23-VL-SD-IA-0002 SAMN37706704-rid19672323.denovo.01, whole genome shotgun sequence	777973..778410	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNSJU010000046.1 Salmonella enterica subsp. enterica serovar Muenchen strain SAL-23-VL-SD-IA-0002 SAMN37706704-rid19672323.guided.13, whole genome shotgun sequence	16457..16894	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNSJU010000023.1 Salmonella enterica subsp. enterica serovar Muenchen strain SAL-23-VL-SD-IA-0002 SAMN37706704-rid19672323.denovo.26, whole genome shotgun sequence	3981..4111																																																						avrA	ABNSJU010000006.1	140114..140983	99.425	870	0						
GCA_032621195.1_PDT001924384.1_genomic.fna	Salmonella_enterica	0.5217	312.622 KB	5	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	1	parC_p.T57S	1	IncFII(pHN7A8),IncFII(pHN7A8)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNSJX010000001.1 Salmonella enterica strain SAL-23-VL-SD-OK-0005 SAMN37706723-rid19674733.denovo.01, whole genome shotgun sequence	574900..575337	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNSJX010000041.1 Salmonella enterica strain SAL-23-VL-SD-OK-0005 SAMN37706723-rid19674733.guided.12, whole genome shotgun sequence	42403..42840	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNSJX010000018.1 Salmonella enterica strain SAL-23-VL-SD-OK-0005 SAMN37706723-rid19674733.denovo.20, whole genome shotgun sequence	20409..21554	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNSJX010000043.1 Salmonella enterica strain SAL-23-VL-SD-OK-0005 SAMN37706723-rid19674733.guided.22, whole genome shotgun sequence	15430..16575	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pHN7A8)	98.08	260 / 260	ABNSJX010000018.1 Salmonella enterica strain SAL-23-VL-SD-OK-0005 SAMN37706723-rid19674733.denovo.20, whole genome shotgun sequence	27283..27542	enterobacteriales	IncFII(pHN7A8)	98.08	260 / 260	ABNSJX010000043.1 Salmonella enterica strain SAL-23-VL-SD-OK-0005 SAMN37706723-rid19674733.guided.22, whole genome shotgun sequence	9442..9701																																																avrA	ABNSJX010000002.1	419848..420717	99.54	870	0						
GCA_032621205.1_PDT001924386.1_genomic.fna	Salmonella_enterica	0.52	324.668 KB	5	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64!,purE_64!,sucA_151,thrA_87	Unknown	7:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64!	purE	100	100	purE_64!	sucA	100	100	sucA_151	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNSJV010000001.1 Salmonella enterica subsp. enterica serovar Rissen strain SAL-23-VL-SD-IA-0003 SAMN37706705-rid19674743.denovo.01, whole genome shotgun sequence	157452..157889	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNSJV010000047.1 Salmonella enterica subsp. enterica serovar Rissen strain SAL-23-VL-SD-IA-0003 SAMN37706705-rid19674743.guided.13, whole genome shotgun sequence	16444..16881	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNSJV010000025.1 Salmonella enterica subsp. enterica serovar Rissen strain SAL-23-VL-SD-IA-0003 SAMN37706705-rid19674743.denovo.28, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNSJV010000049.1 Salmonella enterica subsp. enterica serovar Rissen strain SAL-23-VL-SD-IA-0003 SAMN37706705-rid19674743.guided.30, whole genome shotgun sequence	694..1338	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNSJV010000025.1 Salmonella enterica subsp. enterica serovar Rissen strain SAL-23-VL-SD-IA-0003 SAMN37706705-rid19674743.denovo.28, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNSJV010000049.1 Salmonella enterica subsp. enterica serovar Rissen strain SAL-23-VL-SD-IA-0003 SAMN37706705-rid19674743.guided.30, whole genome shotgun sequence	38..168																																																avrA	ABNSJV010000002.1	184969..185838	99.195	870	0						
GCA_032621235.1_PDT001924383.1_genomic.fna	Salmonella_enterica	0.5209	225.553 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSJY010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0003 SAMN37706724-rid19672313.denovo.01, whole genome shotgun sequence	207386..207823	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNSJY010000077.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0003 SAMN37706724-rid19672313.guided.17, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSJY010000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0003 SAMN37706724-rid19672313.denovo.19, whole genome shotgun sequence	44677..45319	enterobacteriales	IncFII(S)	100	262 / 262	ABNSJY010000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0003 SAMN37706724-rid19672313.denovo.19, whole genome shotgun sequence	60404..60665																																																avrA	ABNSJY010000004.1	95312..96181	99.885	870	0						
GCA_032621255.1_PDT001924385.1_genomic.fna	Salmonella_enterica	0.5214	520.708 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSJW010000001.1 Salmonella enterica strain SAL-23-VL-SD-OK-0004 SAMN37706722-rid19673553.denovo.01, whole genome shotgun sequence	875362..875799	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSJW010000034.1 Salmonella enterica strain SAL-23-VL-SD-OK-0004 SAMN37706722-rid19673553.guided.11, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSJW010000002.1	517015..517884	99.77	870	0						
GCA_032621265.1_PDT001924382.1_genomic.fna	Salmonella_enterica	0.5202	342.543 KB	5	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,qnrB19,qnrB19	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),Col156,Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNSJZ010000001.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-23-VL-SD-MN-0004 SAMN37706725-rid19673543.denovo.01, whole genome shotgun sequence	147287..147724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNSJZ010000094.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-23-VL-SD-MN-0004 SAMN37706725-rid19673543.guided.28, whole genome shotgun sequence	14200..14637	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNSJZ010000002.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-23-VL-SD-MN-0004 SAMN37706725-rid19673543.denovo.02, whole genome shotgun sequence	311933..312355	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNSJZ010000096.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-23-VL-SD-MN-0004 SAMN37706725-rid19673543.guided.40, whole genome shotgun sequence	55..477	Fosfomycin	LAPJ01000014	qnrB19	100	645/645	ABNSJZ010000037.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-23-VL-SD-MN-0004 SAMN37706725-rid19673543.denovo.41, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNSJZ010000097.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-23-VL-SD-MN-0004 SAMN37706725-rid19673543.guided.45, whole genome shotgun sequence	620..1264	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNSJZ010000035.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-23-VL-SD-MN-0004 SAMN37706725-rid19673543.denovo.38, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNSJZ010000037.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-23-VL-SD-MN-0004 SAMN37706725-rid19673543.denovo.41, whole genome shotgun sequence	1522..1652		enterobacteriales	Col156	99.35	154 / 154	ABNSJZ010000029.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-23-VL-SD-MN-0004 SAMN37706725-rid19673543.denovo.32, whole genome shotgun sequence	630..783		enterobacteriales	Col440I	91.23	114 / 114	ABNSJZ010000097.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-23-VL-SD-MN-0004 SAMN37706725-rid19673543.guided.45, whole genome shotgun sequence	3..116		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNSJZ010000015.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-23-VL-SD-MN-0004 SAMN37706725-rid19673543.denovo.15, whole genome shotgun sequence	68656..68797																											avrA	ABNSJZ010000005.1	112253..113122	99.655	870	0						
GCA_032621295.1_PDT001924380.1_genomic.fna	Salmonella_enterica	0.5206	202.347 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,qnrB19,qnrB19,sul1,tet(M),tet(G),tet(A),tet(M),tet(G),tet(A)	0		4	Col(pHAD28),Col(pHAD28),Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSKB010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.denovo.02, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNSKB010000056.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.denovo.66, whole genome shotgun sequence	17..796	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNSKB010000072.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.guided.22, whole genome shotgun sequence	15073..15510	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNSKB010000081.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.guided.64, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNSKB010000052.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.denovo.61, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNSKB010000080.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.guided.59, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNSKB010000040.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.denovo.44, whole genome shotgun sequence	5339..6553	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNSKB010000076.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.guided.45, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNSKB010000047.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.denovo.54, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNSKB010000079.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.guided.55, whole genome shotgun sequence	513..1157	Ciprofloxacin	EU432277	sul1	100	840/840	ABNSKB010000078.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.guided.53, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(M)	96.15	1920/1920	ABNSKB010000039.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.denovo.43, whole genome shotgun sequence	860..2779	Doxycycline, Tetracycline, Minocycline	X04388	tet(G)	100	1176/1176	ABNSKB010000040.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.denovo.44, whole genome shotgun sequence	3227..4402	Doxycycline, Tetracycline	AF133140	tet(A)	99.92	1200/1200	ABNSKB010000044.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.denovo.50, whole genome shotgun sequence	2385..3584	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	ABNSKB010000075.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.guided.42, whole genome shotgun sequence	886..2805	Doxycycline, Tetracycline, Minocycline	X04388	tet(G)	100	1176/1176	ABNSKB010000076.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.guided.45, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140	tet(A)	99.92	1200/1200	ABNSKB010000077.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.guided.49, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	Col(pHAD28)	100	131 / 131	ABNSKB010000047.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.denovo.54, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	107 / 131	ABNSKB010000079.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.guided.55, whole genome shotgun sequence	2846..2952		enterobacteriales	Col440I	92.04	113 / 114	ABNSKB010000046.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.denovo.52, whole genome shotgun sequence	1334..1446		enterobacteriales	IncFIB(S)	100	643 / 643	ABNSKB010000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.denovo.18, whole genome shotgun sequence	18647..19289		enterobacteriales	IncFII(S)	100	262 / 262	ABNSKB010000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-23-VL-SD-MN-0011 SAMN37706727-rid19673533.denovo.18, whole genome shotgun sequence	34374..34635																											avrA	ABNSKB010000004.1	95312..96181	99.885	870	0						
GCA_032621315.1_PDT001924381.1_genomic.fna	Salmonella_enterica	0.5167	368.134 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	12	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,blaCTX-M-55,blaCTX-M-55,fosA7,fosA7,mph(A),mph(A),qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	2	IncHI2,IncHI2A	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSKA010000001.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.denovo.01, whole genome shotgun sequence	486111..486548	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSKA010000009.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.denovo.09, whole genome shotgun sequence	192946..193782	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSKA010000009.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.denovo.09, whole genome shotgun sequence	193782..194585	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNSKA010000030.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.denovo.37, whole genome shotgun sequence	264..1124	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aac(6')-Iaa	97.95	438/438	ABNSKA010000052.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.guided.30, whole genome shotgun sequence	2141..2578	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSKA010000053.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.guided.32, whole genome shotgun sequence	1854..2690	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSKA010000053.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.guided.32, whole genome shotgun sequence	1051..1854	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNSKA010000055.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.guided.36, whole genome shotgun sequence	305..1165	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	blaCTX-M-55	100	876/876	ABNSKA010000027.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.denovo.31, whole genome shotgun sequence	8896..9771	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaCTX-M-55	100	876/876	ABNSKA010000057.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.guided.42, whole genome shotgun sequence	291..1166	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	fosA7	97.16	423/423	ABNSKA010000005.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNSKA010000050.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.guided.26, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014	mph(A)	100	906/906	ABNSKA010000031.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.denovo.39, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	ABNSKA010000056.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.guided.38, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	qnrS1	100	657/657	ABNSKA010000027.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.denovo.31, whole genome shotgun sequence	3599..4255	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNSKA010000054.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.guided.33, whole genome shotgun sequence	3292..3948	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNSKA010000034.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.denovo.44, whole genome shotgun sequence	610..1062	Rifampicin	HQ141279	ARR-2	100	453/453	ABNSKA010000058.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.guided.43, whole genome shotgun sequence	1224..1676	Rifampicin	HQ141279	sul2	100	816/816	ABNSKA010000009.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.denovo.09, whole genome shotgun sequence	194646..195461	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNSKA010000053.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.guided.32, whole genome shotgun sequence	175..990	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNSKA010000009.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.denovo.09, whole genome shotgun sequence	190345..191544	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSKA010000053.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.guided.32, whole genome shotgun sequence	4092..5291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNSKA010000034.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.denovo.44, whole genome shotgun sequence	1173..1646	Trimethoprim	KF921535	dfrA14	100	474/474	ABNSKA010000058.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.guided.43, whole genome shotgun sequence	640..1113	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNSKA010000009.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.denovo.09, whole genome shotgun sequence	70367..70693	enterobacteriales	IncHI2A	99.52	630 / 630	ABNSKA010000009.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-MN-0010 SAMN37706726-rid19674723.denovo.09, whole genome shotgun sequence	85561..86190																																																avrA	ABNSKA010000002.1	173924..174793	99.195	870	0						
GCA_032621335.1_PDT001924375.1_genomic.fna	Salmonella_enterica	0.5219	307.449 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSKD010000001.1 Salmonella enterica subsp. enterica serovar Rubislaw strain SAL-23-VL-SD-NC-0002 SAMN37706711-rid19673523.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSKD010000048.1 Salmonella enterica subsp. enterica serovar Rubislaw strain SAL-23-VL-SD-NC-0002 SAMN37706711-rid19673523.guided.20, whole genome shotgun sequence	9741..10178	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSKD010000003.1	94207..95076	99.31	870	0						
GCA_032621355.1_PDT001924377.1_genomic.fna	Salmonella_enterica	0.5203	278.344 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSKC010000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-23-VL-SD-IA-0011 SAMN37706706-rid19672303.denovo.01, whole genome shotgun sequence	577569..578006	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNSKC010000033.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-23-VL-SD-IA-0011 SAMN37706706-rid19672303.denovo.37, whole genome shotgun sequence	555..1370	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	EU722351	aph(6)-Id	100	837/837	ABNSKC010000035.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-23-VL-SD-IA-0011 SAMN37706706-rid19672303.denovo.40, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSKC010000035.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-23-VL-SD-IA-0011 SAMN37706706-rid19672303.denovo.40, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNSKC010000065.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-23-VL-SD-IA-0011 SAMN37706706-rid19672303.guided.23, whole genome shotgun sequence	11417..11854	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNSKC010000067.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-23-VL-SD-IA-0011 SAMN37706706-rid19672303.guided.36, whole genome shotgun sequence	1..816	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	EU722351	aph(6)-Id	100	837/837	ABNSKC010000068.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-23-VL-SD-IA-0011 SAMN37706706-rid19672303.guided.38, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSKC010000068.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-23-VL-SD-IA-0011 SAMN37706706-rid19672303.guided.38, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNSKC010000040.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-23-VL-SD-IA-0011 SAMN37706706-rid19672303.denovo.47, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNSKC010000070.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-23-VL-SD-IA-0011 SAMN37706706-rid19672303.guided.46, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNSKC010000035.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-23-VL-SD-IA-0011 SAMN37706706-rid19672303.denovo.40, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNSKC010000068.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-23-VL-SD-IA-0011 SAMN37706706-rid19672303.guided.38, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNSKC010000030.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-23-VL-SD-IA-0011 SAMN37706706-rid19672303.denovo.33, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSKC010000069.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-23-VL-SD-IA-0011 SAMN37706706-rid19672303.guided.42, whole genome shotgun sequence	1465..2670	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncX1	98.66	374 / 374	ABNSKC010000025.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-23-VL-SD-IA-0011 SAMN37706706-rid19672303.denovo.27, whole genome shotgun sequence	25712..26085																																																						avrA	ABNSKC010000002.1	539758..540627	99.885	870	0						
GCA_032621375.1_PDT001924376.1_genomic.fna	Salmonella_enterica	0.5195	219.648 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	15	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-VIa,aadA1,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-VIa,aph(3')-Ia,aadA1,blaCMY-2,blaCMY-2,fosA7,fosA7,floR,floR,qnrB77,qnrB77,sul2,sul1,sul2,sul1,tet(A),tet(A),dfrA15,dfrA1,dfrA15,dfrA1	1	parC_p.T57S	2	IncC,IncN	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSKE010000001.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.001, whole genome shotgun sequence	486125..486562	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSKE010000021.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.021, whole genome shotgun sequence	71070..71906	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSKE010000021.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.021, whole genome shotgun sequence	70267..71070	Streptomycin	AF321551	aac(3)-VIa	100	903/903	ABNSKE010000040.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.046, whole genome shotgun sequence	3854..4756	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNSKE010000040.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.046, whole genome shotgun sequence	4920..5711	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNSKE010000055.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.066, whole genome shotgun sequence	137..952	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	V00359	aac(6')-Iaa	97.95	438/438	ABNSKE010000088.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.guided.022, whole genome shotgun sequence	44200..44637	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSKE010000090.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.guided.030, whole genome shotgun sequence	28688..29524	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSKE010000090.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.guided.030, whole genome shotgun sequence	27885..28688	Streptomycin	AF321551	aac(3)-VIa	100	903/903	ABNSKE010000097.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.guided.064, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aph(3')-Ia	100	816/816	ABNSKE010000098.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.guided.065, whole genome shotgun sequence	129..944	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	V00359	aadA1	100	792/792	ABNSKE010000099.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.guided.067, whole genome shotgun sequence	128..919	Spectinomycin, Streptomycin	JQ414041	blaCMY-2	100	1146/1146	ABNSKE010000021.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.021, whole genome shotgun sequence	39905..41050	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNSKE010000091.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.guided.038, whole genome shotgun sequence	1332..2477	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	fosA7	97.16	423/423	ABNSKE010000009.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.009, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNSKE010000093.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.guided.043, whole genome shotgun sequence	4622..5044	Fosfomycin	LAPJ01000014	floR	98.27	1214/1215	ABNSKE010000046.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.054, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNSKE010000095.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.guided.053, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB77	100	645/645	ABNSKE010000053.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.061, whole genome shotgun sequence	201..845	Ciprofloxacin	KM985470	qnrB77	100	645/645	ABNSKE010000096.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.guided.062, whole genome shotgun sequence	238..882	Ciprofloxacin	KM985470	sul2	100	816/816	ABNSKE010000021.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.021, whole genome shotgun sequence	69391..70206	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNSKE010000041.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.047, whole genome shotgun sequence	3499..4338	Sulfamethoxazole	U12338	sul2	100	816/816	ABNSKE010000090.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.guided.030, whole genome shotgun sequence	27009..27824	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNSKE010000094.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.guided.049, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338	tet(A)	100	1240/1275	ABNSKE010000021.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.021, whole genome shotgun sequence	73167..74406	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNSKE010000090.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.guided.030, whole genome shotgun sequence	30785..32059	Doxycycline, Tetracycline	AF534183	dfrA15	100	474/474	ABNSKE010000040.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.046, whole genome shotgun sequence	5813..6286	Trimethoprim	AF221900	dfrA1	100	474/474	ABNSKE010000041.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.047, whole genome shotgun sequence	5383..5856	Trimethoprim	X00926	dfrA15	100	474/474	ABNSKE010000100.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.guided.080, whole genome shotgun sequence	55..528	Trimethoprim	AF221900	dfrA1	100	474/474	ABNSKE010000101.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.guided.081, whole genome shotgun sequence	55..528	Trimethoprim	X00926																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncC	100	417 / 417	ABNSKE010000025.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.027, whole genome shotgun sequence	17604..18020	enterobacteriales	IncN	99.22	514 / 514	ABNSKE010000039.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-23-VL-SD-IA-0012 SAMN37706707-rid19672293.denovo.045, whole genome shotgun sequence	504..1017																																																avrA	ABNSKE010000002.1	122292..123161	99.195	870	0						
GCA_032621395.1_PDT001924373.1_genomic.fna	Salmonella_enterica	0.5201	327.537 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSKG010000001.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-23-VL-SD-NC-0004 SAMN37706713-rid19672283.denovo.01, whole genome shotgun sequence	563455..563892	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSKG010000041.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-23-VL-SD-NC-0004 SAMN37706713-rid19672283.guided.13, whole genome shotgun sequence	40619..41056	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNSKG010000020.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-23-VL-SD-NC-0004 SAMN37706713-rid19672283.denovo.22, whole genome shotgun sequence	1991..2524																																																						avrA	ABNSKG010000010.1	140142..141011	99.31	870	0						
GCA_032621415.1_PDT001924374.1_genomic.fna	Salmonella_enterica	0.5223	239.975 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSKF010000001.1 Salmonella enterica subsp. enterica serovar Rubislaw strain SAL-23-VL-SD-NC-0003 SAMN37706712-rid19674713.denovo.01, whole genome shotgun sequence	162119..162556	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.87	423/438	ABNSKF010000053.1 Salmonella enterica subsp. enterica serovar Rubislaw strain SAL-23-VL-SD-NC-0003 SAMN37706712-rid19674713.guided.39, whole genome shotgun sequence	1..423	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSKF010000012.1	94207..95076	99.31	870	0						
GCA_032621435.1_PDT001924372.1_genomic.fna	Salmonella_enterica	0.5216	410.978 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSKH010000001.1 Salmonella enterica subsp. enterica serovar Thompson strain SAL-23-VL-SD-NC-0005 SAMN37706714-rid19673513.denovo.01, whole genome shotgun sequence	835202..835639	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSKH010000035.1 Salmonella enterica subsp. enterica serovar Thompson strain SAL-23-VL-SD-NC-0005 SAMN37706714-rid19673513.guided.12, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSKH010000003.1	148153..149022	99.77	870	0						
GCA_032621475.1_PDT001924370.1_genomic.fna	Salmonella_enterica	0.522	312.622 KB	5	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNSKJ010000001.1 Salmonella enterica strain SAL-23-VL-SD-OK-0003 SAMN37706721-rid19673503.denovo.01, whole genome shotgun sequence	574900..575337	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNSKJ010000039.1 Salmonella enterica strain SAL-23-VL-SD-OK-0003 SAMN37706721-rid19673503.guided.12, whole genome shotgun sequence	42403..42840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSKJ010000002.1	419848..420717	99.54	870	0						
GCA_032621515.1_PDT001924365.1_genomic.fna	Salmonella_enterica	0.522	201.479 KB	9	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	-:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	-	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:y:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSKM010000001.1 Salmonella enterica strain PNUSAS389488 SAMN37765938-rid19673493.denovo.01, whole genome shotgun sequence	370673..371110	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSKM010000055.1 Salmonella enterica strain PNUSAS389488 SAMN37765938-rid19673493.guided.38, whole genome shotgun sequence	10463..10900	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032621575.1_PDT001924349.1_genomic.fna	Salmonella_enterica	0.521	225.554 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSKN010000001.1 Salmonella enterica strain PNUSAS389529 SAMN37765298-rid19674683.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNSKN010000053.1 Salmonella enterica strain PNUSAS389529 SAMN37765298-rid19674683.guided.39, whole genome shotgun sequence	7268..7705	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSKN010000016.1 Salmonella enterica strain PNUSAS389529 SAMN37765298-rid19674683.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNSKN010000016.1 Salmonella enterica strain PNUSAS389529 SAMN37765298-rid19674683.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABNSKN010000006.1	94139..95007	100	869	0						
GCA_032622235.1_PDT001924320.1_genomic.fna	Salmonella_enterica	0.5208	261.881 KB	8	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSLP010000006.1 Salmonella enterica strain PNUSAS389511 SAMN37765108-rid19673293.denovo.06, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSLP010000041.1 Salmonella enterica strain PNUSAS389511 SAMN37765108-rid19673293.guided.28, whole genome shotgun sequence	2977..3414	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNSLP010000022.1 Salmonella enterica strain PNUSAS389511 SAMN37765108-rid19673293.denovo.22, whole genome shotgun sequence	5998..6531																																																						avrA	ABNSLP010000010.1	188217..189086	99.425	870	0						
GCA_032622255.1_PDT001924318.1_genomic.fna	Salmonella_enterica	0.5124	268.05 KB	9	aroC_33,dnaN_26,hemD_30,hisD_212,purE_131,sucA_87,thrA_134	3996	53:z10:z35	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_212	purE	100	100	purE_131	sucA	100	100	sucA_87	thrA	100	100	thrA_134	53	z10	z35	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 53:z10:z35		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNSLS010000007.1 Salmonella enterica strain PNUSAS389527 SAMN37765103-rid19673283.denovo.07, whole genome shotgun sequence	118286..118723	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNSLS010000058.1 Salmonella enterica strain PNUSAS389527 SAMN37765103-rid19673283.guided.41, whole genome shotgun sequence	119..556	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSLS010000010.1	176178..177046	96.437	870	0						
GCA_032622275.1_PDT001924319.1_genomic.fna	Salmonella_enterica	0.5204	181.937 KB	8	aroC_188,dnaN_199,hemD_426,hisD_62,purE_36,sucA_2,thrA_2	2507	8:l,v:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_188	dnaN	100	100	dnaN_199	hemD	100	100	hemD_426	hisD	100	100	hisD_62	purE	100	100	purE_36	sucA	100	100	sucA_2	thrA	100	100	thrA_2	8	l,v	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Holcomb		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSLQ010000001.1 Salmonella enterica strain PNUSAS389517 SAMN37764998-rid19674633.denovo.01, whole genome shotgun sequence	309081..309518	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSLQ010000057.1 Salmonella enterica strain PNUSAS389517 SAMN37764998-rid19674633.guided.36, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(S)	93.16	643 / 643	ABNSLQ010000021.1 Salmonella enterica strain PNUSAS389517 SAMN37764998-rid19674633.denovo.21, whole genome shotgun sequence	27445..28087	enterobacteriales	IncFII(S)	97.34	263 / 262	ABNSLQ010000021.1 Salmonella enterica strain PNUSAS389517 SAMN37764998-rid19674633.denovo.21, whole genome shotgun sequence	64969..65228																																																avrA	ABNSLQ010000012.1	95033..95902	99.655	870	0						
GCA_032622295.1_PDT001924317.1_genomic.fna	Salmonella_enterica	0.5215	271.008 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNSLR010000001.1 Salmonella enterica strain PNUSAS389524 SAMN37765107-rid19673273.denovo.01, whole genome shotgun sequence	519288..519725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNSLR010000047.1 Salmonella enterica strain PNUSAS389524 SAMN37765107-rid19673273.guided.32, whole genome shotgun sequence	6969..7406	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSLR010000008.1	175837..176705	99.195	870	0						
GCA_032622315.1_PDT001924316.1_genomic.fna	Salmonella_enterica	0.5212	434.93 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNSLT010000002.1 Salmonella enterica strain PNUSAS389522 SAMN37765106-rid19672083.denovo.02, whole genome shotgun sequence	680217..680654	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNSLT010000024.1 Salmonella enterica strain PNUSAS389522 SAMN37765106-rid19672083.guided.17, whole genome shotgun sequence	14748..15185	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNSLT010000003.1	94005..94874	99.54	870	0						
GCA_032622335.1_PDT001924314.1_genomic.fna	Salmonella_enterica	0.5218	245.52 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSLV010000001.1 Salmonella enterica strain PNUSAS389514 SAMN37764995-rid19674623.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSLV010000027.1 Salmonella enterica strain PNUSAS389514 SAMN37764995-rid19674623.denovo.27, whole genome shotgun sequence	2019..2810	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSLV010000027.1 Salmonella enterica strain PNUSAS389514 SAMN37764995-rid19674623.denovo.27, whole genome shotgun sequence	2019..2810	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNSLV010000054.1 Salmonella enterica strain PNUSAS389514 SAMN37764995-rid19674623.guided.34, whole genome shotgun sequence	9283..9720	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSLV010000056.1 Salmonella enterica strain PNUSAS389514 SAMN37764995-rid19674623.guided.44, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSLV010000056.1 Salmonella enterica strain PNUSAS389514 SAMN37764995-rid19674623.guided.44, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNSLV010000027.1 Salmonella enterica strain PNUSAS389514 SAMN37764995-rid19674623.denovo.27, whole genome shotgun sequence	3315..4154	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSLV010000056.1 Salmonella enterica strain PNUSAS389514 SAMN37764995-rid19674623.guided.44, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSLV010000027.1 Salmonella enterica strain PNUSAS389514 SAMN37764995-rid19674623.denovo.27, whole genome shotgun sequence	16671..17870	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSLV010000053.1 Salmonella enterica strain PNUSAS389514 SAMN37764995-rid19674623.guided.32, whole genome shotgun sequence	11479..12678	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSLV010000030.1 Salmonella enterica strain PNUSAS389514 SAMN37764995-rid19674623.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABNSLV010000003.1	39349..40218	99.655	870	0						
GCA_032622355.1_PDT001924315.1_genomic.fna	Salmonella_enterica	0.5211	421.399 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSLU010000001.1 Salmonella enterica strain PNUSAS389526 SAMN37765097-rid19673263.denovo.01, whole genome shotgun sequence	276185..276622	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSLU010000029.1 Salmonella enterica strain PNUSAS389526 SAMN37765097-rid19673263.guided.21, whole genome shotgun sequence	5907..6344	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSLU010000016.1 Salmonella enterica strain PNUSAS389526 SAMN37765097-rid19673263.denovo.16, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABNSLU010000016.1 Salmonella enterica strain PNUSAS389526 SAMN37765097-rid19673263.denovo.16, whole genome shotgun sequence	4078..4339																																																avrA	ABNSLU010000002.1	552782..553651	99.54	870	0						
GCA_032622375.1_PDT001924313.1_genomic.fna	Salmonella_enterica	0.5214	180.056 KB	8	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSLW010000001.1 Salmonella enterica strain PNUSAS389523 SAMN37765104-rid19673253.denovo.01, whole genome shotgun sequence	229389..229826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNSLW010000044.1 Salmonella enterica strain PNUSAS389523 SAMN37765104-rid19673253.guided.28, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032622395.1_PDT001924312.1_genomic.fna	Salmonella_enterica	0.5208	363.469 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSLX010000011.1 Salmonella enterica strain PNUSAS389520 SAMN37765098-rid19672073.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSLX010000048.1 Salmonella enterica strain PNUSAS389520 SAMN37765098-rid19672073.guided.30, whole genome shotgun sequence	9784..10221	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNSLX010000020.1 Salmonella enterica strain PNUSAS389520 SAMN37765098-rid19672073.denovo.20, whole genome shotgun sequence	34957..35490																																																						avrA	ABNSLX010000002.1	39602..40468	98.966	870	0						
GCA_032622415.1_PDT001924311.1_genomic.fna	Salmonella_enterica	0.5223	341.282 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	4	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),Col8282,IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSLY010000001.1 Salmonella enterica strain PNUSAS389512 SAMN37765095-rid19672063.denovo.01, whole genome shotgun sequence	173774..174211	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNSLY010000014.1 Salmonella enterica strain PNUSAS389512 SAMN37765095-rid19672063.denovo.14, whole genome shotgun sequence	69589..70491	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNSLY010000014.1 Salmonella enterica strain PNUSAS389512 SAMN37765095-rid19672063.denovo.14, whole genome shotgun sequence	68634..69425	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNSLY010000034.1 Salmonella enterica strain PNUSAS389512 SAMN37765095-rid19672063.guided.22, whole genome shotgun sequence	10078..10515	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNSLY010000035.1 Salmonella enterica strain PNUSAS389512 SAMN37765095-rid19672063.guided.23, whole genome shotgun sequence	3982..4884	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNSLY010000035.1 Salmonella enterica strain PNUSAS389512 SAMN37765095-rid19672063.guided.23, whole genome shotgun sequence	3027..3818	Spectinomycin, Streptomycin	JQ414041	tet(A)	100	1200/1200	ABNSLY010000014.1 Salmonella enterica strain PNUSAS389512 SAMN37765095-rid19672063.denovo.14, whole genome shotgun sequence	76974..78173	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSLY010000036.1 Salmonella enterica strain PNUSAS389512 SAMN37765095-rid19672063.guided.25, whole genome shotgun sequence	2040..3239	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNSLY010000023.1 Salmonella enterica strain PNUSAS389512 SAMN37765095-rid19672063.denovo.28, whole genome shotgun sequence	1506..1636	enterobacteriales	Col8282	100	207 / 207	ABNSLY010000022.1 Salmonella enterica strain PNUSAS389512 SAMN37765095-rid19672063.denovo.27, whole genome shotgun sequence	414..620		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNSLY010000014.1 Salmonella enterica strain PNUSAS389512 SAMN37765095-rid19672063.denovo.14, whole genome shotgun sequence	83536..83677																																									avrA	ABNSLY010000003.1	39350..40219	98.966	870	0						
GCA_032622435.1_PDT001924309.1_genomic.fna	Salmonella_enterica	0.5214	194.508 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSMA010000001.1 Salmonella enterica strain PNUSAS389515 SAMN37765105-rid19674613.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSMA010000028.1 Salmonella enterica strain PNUSAS389515 SAMN37765105-rid19674613.denovo.31, whole genome shotgun sequence	2019..2810	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSMA010000028.1 Salmonella enterica strain PNUSAS389515 SAMN37765105-rid19674613.denovo.31, whole genome shotgun sequence	2019..2810	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNSMA010000057.1 Salmonella enterica strain PNUSAS389515 SAMN37765105-rid19674613.guided.30, whole genome shotgun sequence	27731..28168	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSMA010000058.1 Salmonella enterica strain PNUSAS389515 SAMN37765105-rid19674613.guided.32, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSMA010000058.1 Salmonella enterica strain PNUSAS389515 SAMN37765105-rid19674613.guided.32, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNSMA010000028.1 Salmonella enterica strain PNUSAS389515 SAMN37765105-rid19674613.denovo.31, whole genome shotgun sequence	3315..4154	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSMA010000058.1 Salmonella enterica strain PNUSAS389515 SAMN37765105-rid19674613.guided.32, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSMA010000028.1 Salmonella enterica strain PNUSAS389515 SAMN37765105-rid19674613.denovo.31, whole genome shotgun sequence	16671..17870	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSMA010000058.1 Salmonella enterica strain PNUSAS389515 SAMN37765105-rid19674613.guided.32, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSMA010000031.1 Salmonella enterica strain PNUSAS389515 SAMN37765105-rid19674613.denovo.35, whole genome shotgun sequence	9109..9668																																																						avrA	ABNSMA010000003.1	39430..40299	99.655	870	0						
GCA_032622455.1_PDT001924308.1_genomic.fna	Salmonella_enterica	0.5221	494.932 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNSMB010000003.1 Salmonella enterica strain PNUSAS389528 SAMN37765094-rid19673243.denovo.03, whole genome shotgun sequence	145371..145808	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNSMB010000023.1 Salmonella enterica strain PNUSAS389528 SAMN37765094-rid19673243.guided.16, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNSMB010000005.1	401501..402370	99.77	870	0						
GCA_032622475.1_PDT001924310.1_genomic.fna	Salmonella_enterica	0.5203	421.407 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSLZ010000004.1 Salmonella enterica strain PNUSAS389525 SAMN37765101-rid19672053.denovo.04, whole genome shotgun sequence	162382..162819	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSLZ010000029.1 Salmonella enterica strain PNUSAS389525 SAMN37765101-rid19672053.guided.24, whole genome shotgun sequence	1291..1728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSLZ010000019.1 Salmonella enterica strain PNUSAS389525 SAMN37765101-rid19672053.denovo.19, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABNSLZ010000019.1 Salmonella enterica strain PNUSAS389525 SAMN37765101-rid19672053.denovo.19, whole genome shotgun sequence	4078..4339		enterobacteriales	IncX1	98.66	374 / 374	ABNSLZ010000020.1 Salmonella enterica strain PNUSAS389525 SAMN37765101-rid19672053.denovo.20, whole genome shotgun sequence	21704..22077																																									avrA	ABNSLZ010000001.1	552767..553636	99.54	870	0						
GCA_032622495.1_PDT001924307.1_genomic.fna	Salmonella_enterica	0.5213	478.496 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSMC010000001.1 Salmonella enterica strain PNUSAS389521 SAMN37765096-rid19673233.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSMC010000028.1 Salmonella enterica strain PNUSAS389521 SAMN37765096-rid19673233.guided.20, whole genome shotgun sequence	4073..4510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSMC010000015.1 Salmonella enterica strain PNUSAS389521 SAMN37765096-rid19673233.denovo.15, whole genome shotgun sequence	47962..48604	enterobacteriales	IncFII(S)	100	262 / 262	ABNSMC010000015.1 Salmonella enterica strain PNUSAS389521 SAMN37765096-rid19673233.denovo.15, whole genome shotgun sequence	3709..3970																																																avrA	ABNSMC010000002.1	553077..553946	99.54	870	0						
GCA_032622515.1_PDT001924306.1_genomic.fna	Salmonella_enterica	0.5219	589.347 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_603	2783	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_603	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNSMD010000001.1 Salmonella enterica strain PNUSAS389518 SAMN37765100-rid19672043.denovo.01, whole genome shotgun sequence	674222..674659	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNSMD010000022.1 Salmonella enterica strain PNUSAS389518 SAMN37765100-rid19672043.guided.13, whole genome shotgun sequence	18462..18899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSMD010000002.1	496275..497144	99.54	870	0						
GCA_032622535.1_PDT001924305.1_genomic.fna	Salmonella_enterica	0.5206	149.142 KB	11	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNSME010000009.1 Salmonella enterica strain PNUSAS389516 SAMN37765102-rid19673223.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNSME010000063.1 Salmonella enterica strain PNUSAS389516 SAMN37765102-rid19673223.guided.45, whole genome shotgun sequence	4050..4484	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032622555.1_PDT001924304.1_genomic.fna	Salmonella_enterica	0.5217	170.795 KB	10	aroC_20,dnaN_4,hemD_23,hisD_14,purE_16,sucA_19,thrA_140	423	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_20	dnaN	100	100	dnaN_4	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_19	thrA	100	100	thrA_140	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSMF010000013.1 Salmonella enterica strain PNUSAS389509 SAMN37765099-rid19674603.denovo.13, whole genome shotgun sequence	37880..38317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSMF010000057.1 Salmonella enterica strain PNUSAS389509 SAMN37765099-rid19674603.guided.42, whole genome shotgun sequence	2005..2442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032622575.1_PDT001924300.1_genomic.fna	Salmonella_enterica	0.5213	412.446 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSMJ010000001.1 Salmonella enterica strain PNUSAS389513 SAMN37764994-rid19672013.denovo.01, whole genome shotgun sequence	414396..414833	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSMJ010000021.1 Salmonella enterica strain PNUSAS389513 SAMN37764994-rid19672013.guided.17, whole genome shotgun sequence	12396..12833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032622595.1_PDT001924302.1_genomic.fna	Salmonella_enterica	0.521	463.016 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSMH010000009.1 Salmonella enterica strain PNUSAS389519 SAMN37764997-rid19672033.denovo.09, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSMH010000035.1 Salmonella enterica strain PNUSAS389519 SAMN37764997-rid19672033.guided.19, whole genome shotgun sequence	9025..9462	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNSMH010000018.1 Salmonella enterica strain PNUSAS389519 SAMN37764997-rid19672033.denovo.18, whole genome shotgun sequence	34957..35490																																																						avrA	ABNSMH010000002.1	39602..40468	98.966	870	0						
GCA_032622615.1_PDT001924303.1_genomic.fna	Salmonella_enterica	0.5209	225.473 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSMG010000001.1 Salmonella enterica strain PNUSAS389510 SAMN37764993-rid19673213.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNSMG010000046.1 Salmonella enterica strain PNUSAS389510 SAMN37764993-rid19673213.guided.21, whole genome shotgun sequence	31383..31820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSMG010000017.1 Salmonella enterica strain PNUSAS389510 SAMN37764993-rid19673213.denovo.17, whole genome shotgun sequence	44623..45265	enterobacteriales	IncFII(S)	100	262 / 262	ABNSMG010000017.1 Salmonella enterica strain PNUSAS389510 SAMN37764993-rid19673213.denovo.17, whole genome shotgun sequence	60350..60611																																																avrA	ABNSMG010000002.1	209348..210217	99.885	870	0						
GCA_032622635.1_PDT001924301.1_genomic.fna	Salmonella_enterica	0.5219	204.279 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSMI010000003.1 Salmonella enterica strain PNUSAS389508 SAMN37764996-rid19672023.denovo.03, whole genome shotgun sequence	223824..224261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNSMI010000044.1 Salmonella enterica strain PNUSAS389508 SAMN37764996-rid19672023.guided.34, whole genome shotgun sequence	14938..15375	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSMI010000016.1 Salmonella enterica strain PNUSAS389508 SAMN37764996-rid19672023.denovo.16, whole genome shotgun sequence	14681..15323	enterobacteriales	IncFII(S)	100	262 / 262	ABNSMI010000016.1 Salmonella enterica strain PNUSAS389508 SAMN37764996-rid19672023.denovo.16, whole genome shotgun sequence	30408..30669																																																avrA	ABNSMI010000001.1	402776..403645	99.885	870	0						
GCA_032622755.1_PDT001924293.1_genomic.fna	Salmonella_enterica	0.5191	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRD010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRD010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRD010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRD010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRD010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRD010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRD010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.denovo.34, whole genome shotgun sequence	33211..34086	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRD010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.guided.65, whole genome shotgun sequence	1295..2170	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRD010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.denovo.34, whole genome shotgun sequence	38727..39383	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRD010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRD010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRD010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRD010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.denovo.34, whole genome shotgun sequence	29201..30400	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRD010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRD010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRD010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRD010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRD010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRD010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306130329 isolate ZY2306130329 SAMEA114440231-rid19673173.denovo.40, whole genome shotgun sequence	11245..11618																																																				
GCA_032622775.1_PDT001924292.1_genomic.fna	Salmonella_enterica	0.5191	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRE010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRE010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRE010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRE010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRE010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRE010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRE010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.denovo.32, whole genome shotgun sequence	33201..34076	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRE010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRE010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.denovo.32, whole genome shotgun sequence	38717..39373	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRE010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRE010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRE010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRE010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.denovo.32, whole genome shotgun sequence	29191..30390	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRE010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.guided.64, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRE010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.denovo.59, whole genome shotgun sequence	183..656	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRE010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.guided.60, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRE010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.denovo.46, whole genome shotgun sequence	5029..5588	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRE010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRE010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306190248 isolate ZV2306190248 SAMEA114440226-rid19671993.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032622795.1_PDT001924291.1_genomic.fna	Salmonella_enterica	0.519	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRF010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRF010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRF010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRF010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRF010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRF010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRF010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.denovo.34, whole genome shotgun sequence	33199..34074	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRF010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRF010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.denovo.34, whole genome shotgun sequence	38715..39371	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRF010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRF010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRF010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRF010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.denovo.34, whole genome shotgun sequence	29189..30388	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRF010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRF010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRF010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRF010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRF010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRF010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306080277 isolate ZV2306080277 SAMEA114440225-rid19671983.denovo.40, whole genome shotgun sequence	11245..11618																																																				
GCA_032622815.1_PDT001924290.1_genomic.fna	Salmonella_enterica	0.5192	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRG010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRG010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRG010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRG010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRG010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRG010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRG010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.denovo.33, whole genome shotgun sequence	33162..34037	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRG010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRG010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.denovo.33, whole genome shotgun sequence	38678..39334	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRG010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRG010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRG010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRG010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.denovo.33, whole genome shotgun sequence	29152..30351	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRG010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRG010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRG010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.guided.63, whole genome shotgun sequence	2614..3087	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRG010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRG010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRG010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W311399 isolate W311399 SAMEA114440223-rid19671973.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032622835.1_PDT001924288.1_genomic.fna	Salmonella_enterica	0.5209	162.564 KB	11	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRI010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain S266 isolate S266 SAMEA114440219-rid19673163.denovo.11, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQDRI010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain S266 isolate S266 SAMEA114440219-rid19673163.guided.42, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032622855.1_PDT001924289.1_genomic.fna	Salmonella_enterica	0.5207	158.377 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRH010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain S267 isolate S267 SAMEA114440220-rid19674573.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQDRH010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain S267 isolate S267 SAMEA114440220-rid19674573.guided.35, whole genome shotgun sequence	13793..14227	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032622875.1_PDT001924287.1_genomic.fna	Salmonella_enterica	0.5191	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRJ010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRJ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRJ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRJ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.guided.46, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRJ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRJ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRJ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.denovo.33, whole genome shotgun sequence	33179..34054	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRJ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRJ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.denovo.33, whole genome shotgun sequence	38695..39351	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRJ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRJ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRJ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRJ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.denovo.33, whole genome shotgun sequence	29169..30368	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRJ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRJ010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRJ010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRJ010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.denovo.48, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRJ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRJ010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain NEHA isolate NEHA SAMEA114440215-rid19674563.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032622895.1_PDT001924286.1_genomic.fna	Salmonella_enterica	0.5192	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRK010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRK010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRK010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRK010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRK010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRK010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRK010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.denovo.33, whole genome shotgun sequence	33406..34281	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRK010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRK010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.denovo.33, whole genome shotgun sequence	38922..39578	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRK010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.guided.51, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRK010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRK010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRK010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.denovo.33, whole genome shotgun sequence	29396..30595	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRK010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRK010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRK010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRK010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.denovo.48, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRK010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRK010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain J54964 isolate J54964 SAMEA114440212-rid19671963.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032622915.1_PDT001924285.1_genomic.fna	Salmonella_enterica	0.5193	154.992 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,sul2,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83Y	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRL010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRL010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.denovo.57, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQDRL010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.denovo.57, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRL010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRL010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.guided.68, whole genome shotgun sequence	821..1657	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQDRL010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.guided.68, whole genome shotgun sequence	18..821	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQDRL010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.guided.69, whole genome shotgun sequence	821..1657	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRL010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.guided.69, whole genome shotgun sequence	18..821	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRL010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.denovo.30, whole genome shotgun sequence	33081..33956	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRL010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.guided.62, whole genome shotgun sequence	1572..2447	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRL010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.denovo.30, whole genome shotgun sequence	38597..39253	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRL010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.guided.47, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRL010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.denovo.57, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	DAQDRL010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.guided.77, whole genome shotgun sequence	93..908	Sulfamethoxazole	HQ840942	sul2	100	816/816	DAQDRL010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.guided.78, whole genome shotgun sequence	93..908	Sulfamethoxazole	FN995456	sul2	99.88	816/816	DAQDRL010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.guided.79, whole genome shotgun sequence	93..908	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRL010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.guided.80, whole genome shotgun sequence	93..908	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRL010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.denovo.30, whole genome shotgun sequence	29071..30270	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRL010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRL010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.denovo.60, whole genome shotgun sequence	183..656	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRL010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.guided.81, whole genome shotgun sequence	154..627	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																					gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRL010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.denovo.54, whole genome shotgun sequence	650..1209	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRL010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.denovo.17, whole genome shotgun sequence	23492..24366		enterobacteriales	IncX1	94.65	374 / 374	DAQDRL010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A99070 isolate A99070 SAMEA114440208-rid19673153.denovo.37, whole genome shotgun sequence	30774..31147																																																				
GCA_032622935.1_PDT001924284.1_genomic.fna	Salmonella_enterica	0.5192	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRM010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRM010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRM010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRM010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRM010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.denovo.32, whole genome shotgun sequence	33227..34102	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRM010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRM010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.denovo.32, whole genome shotgun sequence	38743..39399	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRM010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRM010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRM010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.denovo.32, whole genome shotgun sequence	29217..30416	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRM010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRM010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRM010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRM010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRM010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRM010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88237 isolate A88237 SAMEA114440205-rid19674553.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032622955.1_PDT001924283.1_genomic.fna	Salmonella_enterica	0.5192	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRN010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRN010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRN010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRN010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRN010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRN010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRN010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.denovo.33, whole genome shotgun sequence	33205..34080	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRN010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRN010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.denovo.33, whole genome shotgun sequence	38721..39377	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRN010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRN010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRN010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRN010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.denovo.33, whole genome shotgun sequence	29195..30394	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRN010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRN010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRN010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRN010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.denovo.50, whole genome shotgun sequence	3491..4050	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRN010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRN010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A85268 isolate A85268 SAMEA114440204-rid19673143.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032622975.1_PDT001924281.1_genomic.fna	Salmonella_enterica	0.5192	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRP010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRP010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRP010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRP010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRP010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRP010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRP010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.denovo.33, whole genome shotgun sequence	33233..34108	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRP010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRP010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.denovo.33, whole genome shotgun sequence	38749..39405	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRP010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRP010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRP010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRP010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.denovo.33, whole genome shotgun sequence	29223..30422	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRP010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRP010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.denovo.59, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRP010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRP010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRP010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRP010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 729 isolate 729 SAMEA114440193-rid19671953.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032622995.1_PDT001924282.1_genomic.fna	Salmonella_enterica	0.5193	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRO010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRO010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRO010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRO010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRO010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRO010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRO010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.denovo.33, whole genome shotgun sequence	33235..34110	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRO010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRO010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.denovo.33, whole genome shotgun sequence	38751..39407	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRO010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.guided.52, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRO010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRO010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRO010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.denovo.33, whole genome shotgun sequence	29225..30424	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRO010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRO010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRO010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRO010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRO010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRO010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101658 isolate A101658 SAMEA114440200-rid19674543.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032623015.1_PDT001924278.1_genomic.fna	Salmonella_enterica	0.5192	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRS010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRS010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRS010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRS010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRS010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRS010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.denovo.31, whole genome shotgun sequence	33233..34108	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRS010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.denovo.31, whole genome shotgun sequence	38749..39405	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRS010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRS010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRS010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.denovo.31, whole genome shotgun sequence	29223..30422	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRS010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRS010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRS010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRS010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRS010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRS010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 549 isolate 549 SAMEA114440185-rid19673133.denovo.37, whole genome shotgun sequence	11245..11618																																																				
GCA_032623035.1_PDT001924280.1_genomic.fna	Salmonella_enterica	0.5192	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRQ010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRQ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRQ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRQ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.guided.37, whole genome shotgun sequence	10137..10571	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRQ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRQ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRQ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.denovo.33, whole genome shotgun sequence	33081..33956	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRQ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRQ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.denovo.33, whole genome shotgun sequence	38597..39253	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRQ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRQ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRQ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRQ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.denovo.33, whole genome shotgun sequence	29071..30270	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRQ010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRQ010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRQ010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRQ010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRQ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRQ010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 690 isolate 690 SAMEA114440191-rid19671943.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032623055.1_PDT001924279.1_genomic.fna	Salmonella_enterica	0.5192	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRR010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRR010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.denovo.57, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRR010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.denovo.57, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRR010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRR010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.guided.56, whole genome shotgun sequence	4666..5502	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRR010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.guided.56, whole genome shotgun sequence	3863..4666	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRR010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.denovo.34, whole genome shotgun sequence	33209..34084	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRR010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRR010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.denovo.34, whole genome shotgun sequence	38725..39381	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRR010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.guided.51, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRR010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.denovo.57, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRR010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.guided.56, whole genome shotgun sequence	2987..3802	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRR010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.denovo.34, whole genome shotgun sequence	29199..30398	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRR010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRR010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRR010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRR010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.denovo.48, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRR010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRR010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 55 isolate 55 SAMEA114440186-rid19674533.denovo.40, whole genome shotgun sequence	11245..11618																																																				
GCA_032623095.1_PDT001924277.1_genomic.fna	Salmonella_enterica	0.52	154.992 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRT010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 48 isolate 48 SAMEA114440183-rid19674523.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQDRT010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 48 isolate 48 SAMEA114440183-rid19674523.guided.29, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																																						
GCA_032623115.1_PDT001924276.1_genomic.fna	Salmonella_enterica	0.5193	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRU010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRU010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRU010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRU010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.guided.47, whole genome shotgun sequence	4240..4674	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRU010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRU010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRU010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.denovo.34, whole genome shotgun sequence	33081..33956	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRU010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRU010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.denovo.34, whole genome shotgun sequence	38597..39253	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRU010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRU010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRU010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRU010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.denovo.34, whole genome shotgun sequence	29071..30270	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRU010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRU010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRU010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.guided.64, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRU010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.denovo.50, whole genome shotgun sequence	3495..4054	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRU010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRU010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 362 isolate 362 SAMEA114440180-rid19671933.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032623135.1_PDT001924274.1_genomic.fna	Salmonella_enterica	0.5192	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRW010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRW010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRW010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRW010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.guided.38, whole genome shotgun sequence	6341..6775	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRW010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRW010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRW010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.denovo.34, whole genome shotgun sequence	33197..34072	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRW010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRW010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.denovo.34, whole genome shotgun sequence	38713..39369	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRW010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRW010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRW010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRW010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.denovo.34, whole genome shotgun sequence	29187..30386	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRW010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRW010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRW010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRW010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRW010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRW010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153 isolate 153 SAMEA114440172-rid19674513.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032623155.1_PDT001924275.1_genomic.fna	Salmonella_enterica	0.5197	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRV010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRV010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.denovo.52, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRV010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.denovo.52, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQDRV010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.guided.53, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRV010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.guided.53, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRV010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.guided.59, whole genome shotgun sequence	885..1319	Amikacin, Tobramycin	NC_003197	blaCTX-M-15	100	876/876	DAQDRV010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.denovo.33, whole genome shotgun sequence	33107..33982	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRV010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRV010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.denovo.33, whole genome shotgun sequence	38623..39279	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRV010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.guided.66, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRV010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.denovo.52, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRV010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.guided.53, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRV010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.denovo.33, whole genome shotgun sequence	29097..30296	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRV010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRV010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRV010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.guided.61, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRV010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.denovo.49, whole genome shotgun sequence	3449..4008	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRV010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.denovo.17, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRV010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 2CTRGujarat isolate 2CTRGujarat SAMEA114440179-rid19673123.denovo.37, whole genome shotgun sequence	30652..31025																																																				
GCA_032623175.1_PDT001924273.1_genomic.fna	Salmonella_enterica	0.5194	147.059 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRX010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRX010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRX010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDRX010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.guided.48, whole genome shotgun sequence	12328..12762	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDRX010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDRX010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDRX010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.denovo.33, whole genome shotgun sequence	33438..34313	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDRX010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDRX010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.denovo.33, whole genome shotgun sequence	38954..39610	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDRX010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.guided.66, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDRX010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDRX010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDRX010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.denovo.33, whole genome shotgun sequence	29428..30627	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDRX010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDRX010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDRX010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDRX010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRX010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDRX010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 14 isolate 14 SAMEA114440171-rid19673113.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032623195.1_PDT001924272.1_genomic.fna	Salmonella_enterica	0.5198	160.896 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRY010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-756 isolate 11-756 SAMEA114440162-rid19674503.denovo.09, whole genome shotgun sequence	29754..30188	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQDRY010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-756 isolate 11-756 SAMEA114440162-rid19674503.guided.30, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																																						
GCA_032623215.1_PDT001924270.1_genomic.fna	Salmonella_enterica	0.5203	204.111 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	4	aac(6')-Iaa,aac(6')-Iaa,catA1,catA1,sul1,sul1,dfrA7,dfrA7	1	gyrA_p.S83Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSA010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-638 isolate 11-638 SAMEA114440160-rid19671913.denovo.11, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQDSA010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-638 isolate 11-638 SAMEA114440160-rid19671913.guided.29, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	catA1	99.85	660/660	DAQDSA010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-638 isolate 11-638 SAMEA114440160-rid19671913.denovo.41, whole genome shotgun sequence	14992..15651	Chloramphenicol	V00622	catA1	99.85	660/660	DAQDSA010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-638 isolate 11-638 SAMEA114440160-rid19671913.guided.40, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQDSA010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-638 isolate 11-638 SAMEA114440160-rid19671913.denovo.41, whole genome shotgun sequence	7085..7924	Sulfamethoxazole	U12338	sul1	100	840/840	DAQDSA010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-638 isolate 11-638 SAMEA114440160-rid19671913.guided.40, whole genome shotgun sequence	7991..8830	Sulfamethoxazole	U12338	dfrA7	100	474/474	DAQDSA010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-638 isolate 11-638 SAMEA114440160-rid19671913.denovo.41, whole genome shotgun sequence	8495..8968	Trimethoprim	AB161450	dfrA7	100	474/474	DAQDSA010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-638 isolate 11-638 SAMEA114440160-rid19671913.guided.40, whole genome shotgun sequence	6947..7420	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																																																																																gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																																						
GCA_032623235.1_PDT001924271.1_genomic.fna	Salmonella_enterica	0.5203	153.388 KB	11	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDRZ010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-643 isolate 11-643 SAMEA114440161-rid19671923.denovo.10, whole genome shotgun sequence	29911..30345	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQDRZ010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-643 isolate 11-643 SAMEA114440161-rid19671923.guided.30, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDRZ010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-643 isolate 11-643 SAMEA114440161-rid19671923.denovo.20, whole genome shotgun sequence	23493..24367																																																																	
GCA_032623255.1_PDT001924269.1_genomic.fna	Salmonella_enterica	0.5195	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSB010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-10004 isolate 11-10004 SAMEA114440158-rid19674493.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQDSB010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-10004 isolate 11-10004 SAMEA114440158-rid19674493.guided.29, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032623275.1_PDT001924268.1_genomic.fna	Salmonella_enterica	0.5192	150.056 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSC010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSC010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSC010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSC010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.guided.34, whole genome shotgun sequence	15074..15508	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSC010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSC010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSC010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.denovo.33, whole genome shotgun sequence	33227..34102	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSC010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSC010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.denovo.33, whole genome shotgun sequence	38743..39399	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSC010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSC010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSC010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSC010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.denovo.33, whole genome shotgun sequence	29217..30416	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSC010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSC010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSC010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSC010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSC010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSC010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38038 isolate A38038 SAMEA114327876-rid19673103.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032623295.1_PDT001924267.1_genomic.fna	Salmonella_enterica	0.5192	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSD010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSD010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSD010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSD010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSD010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSD010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSD010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.denovo.33, whole genome shotgun sequence	33216..34091	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSD010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSD010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.denovo.33, whole genome shotgun sequence	38732..39388	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSD010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSD010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSD010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSD010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.denovo.33, whole genome shotgun sequence	29206..30405	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSD010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSD010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSD010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSD010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.denovo.50, whole genome shotgun sequence	3487..4046	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSD010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSD010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287451 isolate W287451 SAMEA114327877-rid19673093.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032623315.1_PDT001924266.1_genomic.fna	Salmonella_enterica	0.5192	150.056 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSE010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSE010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSE010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSE010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.guided.42, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSE010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSE010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSE010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.denovo.32, whole genome shotgun sequence	33190..34065	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSE010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSE010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.denovo.32, whole genome shotgun sequence	38706..39362	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSE010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.guided.51, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSE010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSE010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSE010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.denovo.32, whole genome shotgun sequence	29180..30379	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSE010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSE010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSE010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSE010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSE010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSE010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W287885 isolate W287885 SAMEA114327881-rid19671903.denovo.37, whole genome shotgun sequence	11245..11618																																																				
GCA_032623335.1_PDT001924262.1_genomic.fna	Salmonella_enterica	0.519	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSI010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSI010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSI010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSI010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSI010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.guided.56, whole genome shotgun sequence	4505..5341	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSI010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.guided.56, whole genome shotgun sequence	3702..4505	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSI010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.denovo.34, whole genome shotgun sequence	33229..34104	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSI010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.guided.61, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSI010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.denovo.34, whole genome shotgun sequence	38745..39401	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSI010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSI010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSI010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.guided.56, whole genome shotgun sequence	2826..3641	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSI010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.denovo.34, whole genome shotgun sequence	29219..30418	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSI010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSI010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSI010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSI010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSI010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSI010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W306403 isolate W306403 SAMEA114327895-rid19674473.denovo.40, whole genome shotgun sequence	11245..11618																																																				
GCA_032623355.1_PDT001924264.1_genomic.fna	Salmonella_enterica	0.5192	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSG010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSG010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSG010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSG010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.guided.43, whole genome shotgun sequence	1021..1455	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSG010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSG010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSG010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.denovo.32, whole genome shotgun sequence	33219..34094	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSG010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSG010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.denovo.32, whole genome shotgun sequence	38735..39391	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSG010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSG010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSG010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSG010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.denovo.32, whole genome shotgun sequence	29209..30408	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSG010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSG010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSG010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSG010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSG010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSG010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K315651 isolate K315651 SAMEA114327885-rid19674483.denovo.37, whole genome shotgun sequence	11245..11618																																																				
GCA_032623375.1_PDT001924265.1_genomic.fna	Salmonella_enterica	0.5192	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSF010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSF010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSF010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSF010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSF010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSF010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSF010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.denovo.32, whole genome shotgun sequence	33214..34089	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSF010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSF010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.denovo.32, whole genome shotgun sequence	38730..39386	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSF010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSF010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSF010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSF010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.denovo.32, whole genome shotgun sequence	29204..30403	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSF010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSF010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSF010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSF010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.denovo.49, whole genome shotgun sequence	3489..4048	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSF010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSF010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B103190 isolate B103190 SAMEA114327884-rid19671893.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032623395.1_PDT001924263.1_genomic.fna	Salmonella_enterica	0.5193	150.056 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSH010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSH010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSH010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSH010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.guided.43, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSH010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSH010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSH010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.denovo.32, whole genome shotgun sequence	33225..34100	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSH010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSH010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.denovo.32, whole genome shotgun sequence	38741..39397	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSH010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.guided.52, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSH010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSH010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSH010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.denovo.32, whole genome shotgun sequence	29215..30414	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSH010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSH010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSH010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSH010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.denovo.49, whole genome shotgun sequence	3435..3994	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSH010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSH010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N239435 isolate N239435 SAMEA114327887-rid19673083.denovo.37, whole genome shotgun sequence	11245..11618																																																				
GCA_032623415.1_PDT001924261.1_genomic.fna	Salmonella_enterica	0.5196	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSJ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSJ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.denovo.51, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSJ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.denovo.51, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSJ010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.guided.34, whole genome shotgun sequence	11956..12390	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSJ010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.guided.52, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSJ010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.guided.52, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.denovo.30, whole genome shotgun sequence	33219..34094	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSJ010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.guided.54, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.denovo.30, whole genome shotgun sequence	38735..39391	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSJ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.guided.62, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSJ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.denovo.51, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSJ010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.guided.52, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.denovo.30, whole genome shotgun sequence	29209..30408	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSJ010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSJ010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.denovo.59, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSJ010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.guided.60, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSJ010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.denovo.47, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSJ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.denovo.17, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSJ010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N229683 isolate N229683 SAMEA114327899-rid19671883.denovo.36, whole genome shotgun sequence	11245..11618																																																				
GCA_032623435.1_PDT001924259.1_genomic.fna	Salmonella_enterica	0.5192	150.056 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSL010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSL010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSL010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSL010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSL010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSL010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.denovo.33, whole genome shotgun sequence	33180..34055	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSL010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.denovo.33, whole genome shotgun sequence	38696..39352	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSL010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.guided.51, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSL010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSL010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.denovo.33, whole genome shotgun sequence	29170..30369	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSL010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.guided.63, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSL010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.denovo.60, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSL010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSL010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.denovo.48, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSL010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSL010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V90583 isolate V90853 SAMEA114327904-rid19673063.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032623455.1_PDT001924260.1_genomic.fna	Salmonella_enterica	0.5195	150.056 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,sul2,tet(A),tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSK010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSK010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	837/837	DAQDSK010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSK010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQDSK010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSK010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSK010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.denovo.32, whole genome shotgun sequence	33184..34059	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSK010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSK010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.denovo.32, whole genome shotgun sequence	38700..39356	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSK010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.guided.59, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSK010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSK010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSK010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.denovo.32, whole genome shotgun sequence	29174..30373	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQDSK010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.guided.64, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSK010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.guided.65, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSK010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.denovo.61, whole genome shotgun sequence	900..1373	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSK010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.guided.71, whole genome shotgun sequence	830..1303	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																												gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSK010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.denovo.49, whole genome shotgun sequence	3477..4036	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSK010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSK010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K332914 isolate K332914 SAMEA114327902-rid19673073.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032623475.1_PDT001924258.1_genomic.fna	Salmonella_enterica	0.5194	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSM010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSM010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.denovo.52, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSM010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.denovo.52, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSM010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.guided.40, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSM010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.guided.53, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSM010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.guided.53, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSM010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.denovo.31, whole genome shotgun sequence	33187..34062	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSM010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSM010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.denovo.31, whole genome shotgun sequence	38703..39359	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSM010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.guided.48, whole genome shotgun sequence	932..1588	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSM010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.denovo.52, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSM010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.guided.53, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSM010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.denovo.31, whole genome shotgun sequence	29177..30376	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSM010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSM010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.denovo.60, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSM010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.guided.62, whole genome shotgun sequence	2596..3069	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSM010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.denovo.47, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSM010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.denovo.17, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSM010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A103149 isolate A103149 SAMEA114327909-rid19673053.denovo.36, whole genome shotgun sequence	11245..11618																																																				
GCA_032623495.1_PDT001924256.1_genomic.fna	Salmonella_enterica	0.5191	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSO010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSO010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSO010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSO010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSO010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSO010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSO010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.denovo.33, whole genome shotgun sequence	33177..34052	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSO010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSO010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.denovo.33, whole genome shotgun sequence	38693..39349	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSO010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSO010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSO010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSO010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.denovo.33, whole genome shotgun sequence	29167..30366	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSO010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSO010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSO010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.guided.73, whole genome shotgun sequence	141..614	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSO010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.denovo.49, whole genome shotgun sequence	3489..4048	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSO010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSO010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163796 isolate R1163796 SAMEA114327918-rid19671873.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032623515.1_PDT001924257.1_genomic.fna	Salmonella_enterica	0.5192	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSN010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSN010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSN010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSN010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSN010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSN010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSN010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.denovo.32, whole genome shotgun sequence	33211..34086	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSN010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSN010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.denovo.32, whole genome shotgun sequence	38727..39383	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSN010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSN010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSN010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSN010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.denovo.32, whole genome shotgun sequence	29201..30400	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSN010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSN010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.denovo.60, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSN010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.guided.61, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSN010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSN010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSN010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A84286 isolate A84286 SAMEA114327916-rid19674463.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032623535.1_PDT001924254.1_genomic.fna	Salmonella_enterica	0.5194	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSQ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSQ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSQ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSQ010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.guided.45, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSQ010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSQ010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSQ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.denovo.32, whole genome shotgun sequence	33201..34076	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSQ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSQ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.denovo.32, whole genome shotgun sequence	38717..39373	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSQ010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSQ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSQ010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSQ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.denovo.32, whole genome shotgun sequence	29191..30390	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSQ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSQ010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSQ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.guided.63, whole genome shotgun sequence	2607..3080	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSQ010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSQ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSQ010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120755 isolate B120755 SAMEA114327923-rid19671853.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032623555.1_PDT001924255.1_genomic.fna	Salmonella_enterica	0.5193	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSP010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSP010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.denovo.52, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSP010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.denovo.52, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSP010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSP010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSP010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSP010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.denovo.33, whole genome shotgun sequence	33231..34106	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSP010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSP010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.denovo.33, whole genome shotgun sequence	38747..39403	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSP010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.guided.60, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSP010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.denovo.52, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSP010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSP010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.denovo.33, whole genome shotgun sequence	29221..30420	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSP010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSP010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSP010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSP010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSP010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSP010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102968 isolate A102968 SAMEA114327920-rid19671863.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032623575.1_PDT001924253.1_genomic.fna	Salmonella_enterica	0.5192	150.058 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSR010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.denovo.09, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSR010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSR010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSR010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.guided.44, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSR010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSR010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSR010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.denovo.33, whole genome shotgun sequence	33207..34082	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSR010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSR010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.denovo.33, whole genome shotgun sequence	38723..39379	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSR010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.guided.66, whole genome shotgun sequence	756..1412	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSR010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSR010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSR010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.denovo.33, whole genome shotgun sequence	29197..30396	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSR010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSR010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSR010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSR010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSR010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSR010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104558 isolate A104558 SAMEA114327931-rid19673043.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032623595.1_PDT001924252.1_genomic.fna	Salmonella_enterica	0.5193	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSS010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.denovo.09, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSS010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSS010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSS010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSS010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSS010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.denovo.31, whole genome shotgun sequence	33225..34100	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSS010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.denovo.31, whole genome shotgun sequence	38741..39397	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSS010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSS010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSS010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.denovo.31, whole genome shotgun sequence	29215..30414	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSS010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSS010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.denovo.60, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSS010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.guided.61, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSS010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSS010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSS010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105226 isolate A105226 SAMEA114327932-rid19674453.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032623615.1_PDT001924251.1_genomic.fna	Salmonella_enterica	0.5191	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDST010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDST010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.denovo.52, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDST010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.denovo.52, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDST010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.guided.38, whole genome shotgun sequence	4834..5268	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDST010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.guided.53, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDST010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.guided.53, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDST010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.denovo.32, whole genome shotgun sequence	33224..34099	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDST010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDST010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.denovo.32, whole genome shotgun sequence	38740..39396	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDST010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.guided.63, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDST010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.denovo.52, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDST010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.guided.53, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDST010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.denovo.32, whole genome shotgun sequence	29214..30413	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDST010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDST010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.denovo.60, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDST010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.guided.61, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDST010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.denovo.48, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDST010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDST010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105009 isolate A105009 SAMEA114327935-rid19671843.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032623635.1_PDT001924250.1_genomic.fna	Salmonella_enterica	0.5197	106.585 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSU010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSU010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.denovo.62, whole genome shotgun sequence	700..1536	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSU010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.denovo.62, whole genome shotgun sequence	1536..2339	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSU010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.guided.55, whole genome shotgun sequence	7216..7650	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSU010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.guided.64, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSU010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.guided.64, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSU010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.denovo.33, whole genome shotgun sequence	39260..40135	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSU010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.guided.65, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSU010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.denovo.33, whole genome shotgun sequence	44776..45432	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSU010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.guided.71, whole genome shotgun sequence	504..1160	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSU010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.denovo.62, whole genome shotgun sequence	2400..3215	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSU010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.guided.64, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSU010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.denovo.33, whole genome shotgun sequence	35250..36449	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSU010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.guided.66, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSU010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.denovo.72, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSU010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.guided.73, whole genome shotgun sequence	2555..3028	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSU010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.denovo.58, whole genome shotgun sequence	3337..3896	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSU010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.denovo.13, whole genome shotgun sequence	63808..64682		enterobacteriales	IncX1	94.65	374 / 374	DAQDSU010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120004 isolate 120004 SAMEA113534628-rid19673033.denovo.44, whole genome shotgun sequence	32586..32959																																																				
GCA_032623655.1_PDT001924249.1_genomic.fna	Salmonella_enterica	0.5195	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSV010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSV010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSV010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSV010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.guided.47, whole genome shotgun sequence	12319..12753	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSV010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSV010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSV010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.denovo.33, whole genome shotgun sequence	33201..34076	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSV010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.guided.59, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSV010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.denovo.33, whole genome shotgun sequence	38717..39373	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSV010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSV010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSV010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSV010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.denovo.33, whole genome shotgun sequence	29191..30390	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSV010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSV010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.denovo.64, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSV010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.guided.65, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSV010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.denovo.51, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSV010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSV010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-1036 isolate 11-1036 SAMEA113537081-rid19671833.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032623715.1_PDT001924245.1_genomic.fna	Salmonella_enterica	0.522	334.671 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncN2	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSMP010000001.1 Salmonella enterica strain PNUSAS389486 SAMN37755869-rid19671413.denovo.01, whole genome shotgun sequence	177173..177610	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSMP010000032.1 Salmonella enterica strain PNUSAS389486 SAMN37755869-rid19671413.guided.26, whole genome shotgun sequence	1797..2234	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncN2	98.74	477 / 477	ABNSMP010000020.1 Salmonella enterica strain PNUSAS389486 SAMN37755869-rid19671413.denovo.20, whole genome shotgun sequence	46745..47221																																																						avrA	ABNSMP010000006.1	147981..148850	99.77	870	0						
GCA_032623735.1_PDT001924244.1_genomic.fna	Salmonella_enterica	0.5214	283.019 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSMO010000001.1 Salmonella enterica strain PNUSAS389487 SAMN37755870-rid19671813.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSMO010000034.1 Salmonella enterica strain PNUSAS389487 SAMN37755870-rid19671813.guided.26, whole genome shotgun sequence	5262..5699	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSMO010000022.1 Salmonella enterica strain PNUSAS389487 SAMN37755870-rid19671813.denovo.22, whole genome shotgun sequence	6789..7431	enterobacteriales	IncFII(S)	100	262 / 262	ABNSMO010000024.1 Salmonella enterica strain PNUSAS389487 SAMN37755870-rid19671813.denovo.27, whole genome shotgun sequence	3395..3656																																																avrA	ABNSMO010000002.1	553077..553946	99.54	870	0						
GCA_032623755.1_PDT001924243.1_genomic.fna	Salmonella_enterica	0.5221	196.226 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_110,sucA_9,thrA_2	302	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_110	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSMQ010000001.1 Salmonella enterica strain PNUSAS389485 SAMN37755868-rid19671403.denovo.01, whole genome shotgun sequence	207030..207467	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNSMQ010000051.1 Salmonella enterica strain PNUSAS389485 SAMN37755868-rid19671403.guided.40, whole genome shotgun sequence	2536..2973	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSMQ010000018.1 Salmonella enterica strain PNUSAS389485 SAMN37755868-rid19671403.denovo.18, whole genome shotgun sequence	48450..49092	enterobacteriales	IncFII(S)	100	262 / 262	ABNSMQ010000018.1 Salmonella enterica strain PNUSAS389485 SAMN37755868-rid19671403.denovo.18, whole genome shotgun sequence	64177..64438																																																avrA	ABNSMQ010000012.1	98459..99328	99.885	870	0						
GCA_032623775.1_PDT001924242.1_genomic.fna	Salmonella_enterica	0.5216	761.796 KB	2	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNSMR010000001.1 Salmonella enterica strain PNUSAS389459 SAMN37754388-rid19671393.denovo.01, whole genome shotgun sequence	1371148..1371585	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNSMR010000015.1 Salmonella enterica strain PNUSAS389459 SAMN37754388-rid19671393.guided.08, whole genome shotgun sequence	4808..5245	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNSMR010000004.1	151331..152200	99.77	870	0						
GCA_032623795.1_PDT001924240.1_genomic.fna	Salmonella_enterica	0.5203	478.725 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSMT010000001.1 Salmonella enterica strain PNUSAS389470 SAMN37754382-rid19671373.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSMT010000019.1 Salmonella enterica strain PNUSAS389470 SAMN37754382-rid19671373.guided.14, whole genome shotgun sequence	9657..10094	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABNSMT010000012.1 Salmonella enterica strain PNUSAS389470 SAMN37754382-rid19671373.denovo.13, whole genome shotgun sequence	32011..32384																																																						avrA	ABNSMT010000002.1	553690..554559	99.54	870	0						
GCA_032623815.1_PDT001924241.1_genomic.fna	Salmonella_enterica	0.5214	521.567 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),ColRNAI	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNSMS010000001.1 Salmonella enterica strain PNUSAS389484 SAMN37754368-rid19671383.denovo.01, whole genome shotgun sequence	479971..480408	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNSMS010000028.1 Salmonella enterica strain PNUSAS389484 SAMN37754368-rid19671383.guided.19, whole genome shotgun sequence	16457..16894	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNSMS010000019.1 Salmonella enterica strain PNUSAS389484 SAMN37754368-rid19671383.denovo.22, whole genome shotgun sequence	239..369	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNSMS010000023.1 Salmonella enterica strain PNUSAS389484 SAMN37754368-rid19671383.denovo.26, whole genome shotgun sequence	186..316		enterobacteriales	ColRNAI	90.08	131 / 130	ABNSMS010000021.1 Salmonella enterica strain PNUSAS389484 SAMN37754368-rid19671383.denovo.24, whole genome shotgun sequence	3981..4111																																									avrA	ABNSMS010000002.1	561374..562243	99.425	870	0						
GCA_032623835.1_PDT001924239.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSMV010000001.1 Salmonella enterica strain PNUSAS389471 SAMN37754392-rid19671363.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSMV010000020.1 Salmonella enterica strain PNUSAS389471 SAMN37754392-rid19671363.guided.14, whole genome shotgun sequence	16113..16550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSMV010000012.1 Salmonella enterica strain PNUSAS389471 SAMN37754392-rid19671363.denovo.12, whole genome shotgun sequence	40544..41186	enterobacteriales	IncFII(S)	100	262 / 262	ABNSMV010000014.1 Salmonella enterica strain PNUSAS389471 SAMN37754392-rid19671363.denovo.17, whole genome shotgun sequence	3392..3653																																																avrA	ABNSMV010000002.1	553636..554505	99.54	870	0						
GCA_032623875.1_PDT001924237.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSMX010000001.1 Salmonella enterica strain PNUSAS389464 SAMN37754386-rid19671343.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSMX010000021.1 Salmonella enterica strain PNUSAS389464 SAMN37754386-rid19671343.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSMX010000012.1 Salmonella enterica strain PNUSAS389464 SAMN37754386-rid19671343.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNSMX010000014.1 Salmonella enterica strain PNUSAS389464 SAMN37754386-rid19671343.denovo.17, whole genome shotgun sequence	3398..3659																																																avrA	ABNSMX010000002.1	553636..554505	99.54	870	0						
GCA_032623895.1_PDT001924234.1_genomic.fna	Salmonella_enterica	0.521	433.611 KB	3	aroC_22,dnaN_104,hemD_48,hisD_231,purE_114,sucA_107,thrA_4	1069	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_48	hisD	100	100	hisD_231	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNSMY010000001.1 Salmonella enterica strain PNUSAS389466 SAMN37754390-rid19671803.denovo.01, whole genome shotgun sequence	498011..498448	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNSMY010000027.1 Salmonella enterica strain PNUSAS389466 SAMN37754390-rid19671803.guided.20, whole genome shotgun sequence	3399..3836	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSMY010000007.1	140299..141168	99.54	870	0						
GCA_032623915.1_PDT001924233.1_genomic.fna	Salmonella_enterica	0.5226	380.131 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNSMZ010000001.1 Salmonella enterica strain PNUSAS389475 SAMN37754376-rid19671323.denovo.01, whole genome shotgun sequence	405412..405849	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNSMZ010000029.1 Salmonella enterica strain PNUSAS389475 SAMN37754376-rid19671323.guided.21, whole genome shotgun sequence	1351..1788	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNSMZ010000019.1 Salmonella enterica strain PNUSAS389475 SAMN37754376-rid19671323.denovo.22, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNSMZ010000020.1 Salmonella enterica strain PNUSAS389475 SAMN37754376-rid19671323.denovo.23, whole genome shotgun sequence	2528..2639																																																avrA	ABNSMZ010000008.1	174277..175145	99.425	870	0						
GCA_032623935.1_PDT001924235.1_genomic.fna	Salmonella_enterica	0.521	266.637 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSMW010000002.1 Salmonella enterica strain PNUSAS389473 SAMN37754371-rid19671333.denovo.02, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	Col156	96.1	154 / 154	ABNSMW010000034.1 Salmonella enterica strain PNUSAS389473 SAMN37754371-rid19671333.denovo.37, whole genome shotgun sequence	483..636																																																						avrA	ABNSMW010000006.1	184443..185311	99.77	870	0						
GCA_032623955.1_PDT001924232.1_genomic.fna	Salmonella_enterica	0.5216	299.98 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSNB010000001.1 Salmonella enterica strain PNUSAS389474 SAMN37754378-rid19671313.denovo.01, whole genome shotgun sequence	591757..592194	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNSNB010000039.1 Salmonella enterica strain PNUSAS389474 SAMN37754378-rid19671313.guided.28, whole genome shotgun sequence	3360..3797	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSNB010000015.1 Salmonella enterica strain PNUSAS389474 SAMN37754378-rid19671313.denovo.15, whole genome shotgun sequence	48411..49053	enterobacteriales	IncFII(S)	100	262 / 262	ABNSNB010000015.1 Salmonella enterica strain PNUSAS389474 SAMN37754378-rid19671313.denovo.15, whole genome shotgun sequence	64138..64399																																																avrA	ABNSNB010000004.1	174998..175867	99.885	870	0						
GCA_032623975.1_PDT001924231.1_genomic.fna	Salmonella_enterica	0.5192	707.807 KB	2	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSNC010000001.1 Salmonella enterica strain PNUSAS389479 SAMN37754372-rid19671793.denovo.01, whole genome shotgun sequence	624533..624970	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSNC010000018.1 Salmonella enterica strain PNUSAS389479 SAMN37754372-rid19671793.guided.14, whole genome shotgun sequence	3960..4397	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABNSNC010000009.1 Salmonella enterica strain PNUSAS389479 SAMN37754372-rid19671793.denovo.10, whole genome shotgun sequence	10298..10619																																																																	
GCA_032623995.1_PDT001924230.1_genomic.fna	Salmonella_enterica	0.5208	278.344 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(3')-Ia,aph(6)-Id,aph(6)-Id,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		3	Col(pHAD28),Col(pHAD28),Col440II,IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSND010000001.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNSND010000030.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.denovo.33, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNSND010000033.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.denovo.37, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSND010000033.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.denovo.37, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNSND010000049.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.guided.34, whole genome shotgun sequence	2258..2695	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	804/804	ABNSND010000050.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.guided.41, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNSND010000051.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.guided.44, whole genome shotgun sequence	762..1577	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABNSND010000053.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.guided.51, whole genome shotgun sequence	30..866	Streptomycin	M28829	aph(6)-Id	99.88	837/837	ABNSND010000054.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.guided.52, whole genome shotgun sequence	30..866	Streptomycin	M28829	blaTEM-1B	100	861/861	ABNSND010000039.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.denovo.45, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNSND010000052.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.guided.48, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNSND010000033.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.denovo.37, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNSND010000050.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.guided.41, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNSND010000027.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.denovo.27, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSND010000047.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.guided.29, whole genome shotgun sequence	2804..4009	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																			enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNSND010000028.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.denovo.31, whole genome shotgun sequence	1326..1445	enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNSND010000034.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.denovo.38, whole genome shotgun sequence	846..974		enterobacteriales	Col440II	97.52	282 / 282	ABNSND010000034.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.denovo.38, whole genome shotgun sequence	1551..1832		enterobacteriales	IncY	99.74	765 / 765	ABNSND010000015.1 Salmonella enterica strain PNUSAS389468 SAMN37754384-rid19671303.denovo.15, whole genome shotgun sequence	63874..64638																																		avrA	ABNSND010000002.1	540741..541610	99.885	870	0						
GCA_032624035.1_PDT001924228.1_genomic.fna	Salmonella_enterica	0.522	235.669 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSNE010000001.1 Salmonella enterica strain PNUSAS389465 SAMN37754373-rid19671293.denovo.01, whole genome shotgun sequence	257393..257830	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNSNE010000039.1 Salmonella enterica strain PNUSAS389465 SAMN37754373-rid19671293.guided.21, whole genome shotgun sequence	12334..12771	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032624075.1_PDT001924227.1_genomic.fna	Salmonella_enterica	0.521	736.938 KB	2	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSNF010000001.1 Salmonella enterica strain PNUSAS389472 SAMN37754379-rid19671283.denovo.01, whole genome shotgun sequence	648005..648442	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNSNF010000020.1 Salmonella enterica strain PNUSAS389472 SAMN37754379-rid19671283.guided.13, whole genome shotgun sequence	24481..24918	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSNF010000003.1	192297..193166	99.425	870	0						
GCA_032624115.1_PDT001924225.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSNH010000001.1 Salmonella enterica strain PNUSAS389477 SAMN37754377-rid19671263.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSNH010000021.1 Salmonella enterica strain PNUSAS389477 SAMN37754377-rid19671263.guided.15, whole genome shotgun sequence	8239..8676	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSNH010000012.1 Salmonella enterica strain PNUSAS389477 SAMN37754377-rid19671263.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNSNH010000014.1 Salmonella enterica strain PNUSAS389477 SAMN37754377-rid19671263.denovo.16, whole genome shotgun sequence	3268..3529																																																avrA	ABNSNH010000002.1	553635..554504	99.54	870	0						
GCA_032624135.1_PDT001924224.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSNI010000001.1 Salmonella enterica strain PNUSAS389458 SAMN37754385-rid19671773.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSNI010000022.1 Salmonella enterica strain PNUSAS389458 SAMN37754385-rid19671773.guided.16, whole genome shotgun sequence	21305..21742	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSNI010000013.1 Salmonella enterica strain PNUSAS389458 SAMN37754385-rid19671773.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNSNI010000015.1 Salmonella enterica strain PNUSAS389458 SAMN37754385-rid19671773.denovo.18, whole genome shotgun sequence	3423..3684																																																avrA	ABNSNI010000002.1	553636..554505	99.54	870	0						
GCA_032624155.1_PDT001924223.1_genomic.fna	Salmonella_enterica	0.5216	438.302 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSNK010000001.1 Salmonella enterica strain PNUSAS389482 SAMN37754369-rid19671253.denovo.01, whole genome shotgun sequence	1028128..1028565	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSNK010000021.1 Salmonella enterica strain PNUSAS389482 SAMN37754369-rid19671253.guided.15, whole genome shotgun sequence	9520..9957	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSNK010000004.1	130566..131435	99.77	870	0						
GCA_032624175.1_PDT001924222.1_genomic.fna	Salmonella_enterica	0.5217	390.438 KB	5	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4*	4*	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	99.8003992015968	100	thrA_4*	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSNJ010000001.1 Salmonella enterica strain PNUSAS389478 SAMN37754374-rid19671243.denovo.01, whole genome shotgun sequence	396198..396635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSNJ010000030.1 Salmonella enterica strain PNUSAS389478 SAMN37754374-rid19671243.guided.20, whole genome shotgun sequence	41923..42360	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNSNJ010000014.1 Salmonella enterica strain PNUSAS389478 SAMN37754374-rid19671243.denovo.14, whole genome shotgun sequence	84364..84505																																																																	
GCA_032624195.1_PDT001924226.1_genomic.fna	Salmonella_enterica	0.5203	673.46 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSNG010000001.1 Salmonella enterica strain PNUSAS389460 SAMN37754394-rid19671273.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSNG010000015.1 Salmonella enterica strain PNUSAS389460 SAMN37754394-rid19671273.guided.11, whole genome shotgun sequence	2244..2681	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032624215.1_PDT001924221.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSNL010000001.1 Salmonella enterica strain PNUSAS389456 SAMN37754389-rid19671233.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSNL010000024.1 Salmonella enterica strain PNUSAS389456 SAMN37754389-rid19671233.guided.18, whole genome shotgun sequence	8243..8680	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSNL010000012.1 Salmonella enterica strain PNUSAS389456 SAMN37754389-rid19671233.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNSNL010000012.1 Salmonella enterica strain PNUSAS389456 SAMN37754389-rid19671233.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABNSNL010000002.1	553636..554505	99.54	870	0						
GCA_032624335.1_PDT001924214.1_genomic.fna	Salmonella_enterica	0.5224	31.991 KB	46	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncI1-I(Alpha)	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSNT010000061.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325591 SAMN37752499-rid19671753.denovo.061, whole genome shotgun sequence	12391..12828	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSNT010000170.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325591 SAMN37752499-rid19671753.denovo.171, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSNT010000170.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325591 SAMN37752499-rid19671753.denovo.171, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNSNT010000318.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325591 SAMN37752499-rid19671753.guided.110, whole genome shotgun sequence	3486..3923	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSNT010000320.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325591 SAMN37752499-rid19671753.guided.213, whole genome shotgun sequence	2296..3132	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSNT010000320.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325591 SAMN37752499-rid19671753.guided.213, whole genome shotgun sequence	1493..2296	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNSNT010000213.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325591 SAMN37752499-rid19671753.denovo.216, whole genome shotgun sequence	1966..3171	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSNT010000321.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325591 SAMN37752499-rid19671753.guided.221, whole genome shotgun sequence	1725..2930	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNSNT010000199.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325591 SAMN37752499-rid19671753.denovo.201, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNSNT010000170.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325591 SAMN37752499-rid19671753.denovo.171, whole genome shotgun sequence	1831..2092		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNSNT010000236.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325591 SAMN37752499-rid19671753.denovo.240, whole genome shotgun sequence	278..419																																									avrA	ABNSNT010000029.1	39484..40353	99.655	870	0						
GCA_032624575.1_PDT001924202.1_genomic.fna	Salmonella_enterica	0.5214	41.016 KB	38	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSOD010000072.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314522 SAMN37736531-rid19671093.denovo.072, whole genome shotgun sequence	6955..7392	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSOD010000151.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314522 SAMN37736531-rid19671093.denovo.154, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSOD010000151.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314522 SAMN37736531-rid19671093.denovo.154, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNSOD010000268.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314522 SAMN37736531-rid19671093.guided.076, whole genome shotgun sequence	14223..14660	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSOD010000271.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314522 SAMN37736531-rid19671093.guided.157, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSOD010000271.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314522 SAMN37736531-rid19671093.guided.157, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNSOD010000179.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314522 SAMN37736531-rid19671093.denovo.184, whole genome shotgun sequence	2155..3360	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSOD010000272.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314522 SAMN37736531-rid19671093.guided.182, whole genome shotgun sequence	2186..3391	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNSOD010000176.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314522 SAMN37736531-rid19671093.denovo.180, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNSOD010000151.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314522 SAMN37736531-rid19671093.denovo.154, whole genome shotgun sequence	1831..2092		enterobacteriales	IncFII	96.95	262 / 261	ABNSOD010000271.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314522 SAMN37736531-rid19671093.guided.157, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNSOD010000137.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314522 SAMN37736531-rid19671093.denovo.140, whole genome shotgun sequence	4669..4810		enterobacteriales	IncX1	100	373 / 373	ABNSOD010000199.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314522 SAMN37736531-rid19671093.denovo.204, whole genome shotgun sequence	2153..2525																											avrA	ABNSOD010000037.1	39484..40353	99.655	870	0						
GCA_032624595.1_PDT001924201.1_genomic.fna	Salmonella_enterica	0.5222	59.126 KB	24	aroC_347,dnaN_325,hemD_93,hisD_412*,purE_363,sucA_132,thrA_168	1298*	-:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	99.8003992015968	100	hisD_412*	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSOG010000056.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314465 SAMN37736303-rid19671083.denovo.056, whole genome shotgun sequence	14104..14541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSOG010000156.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314465 SAMN37736303-rid19671083.guided.091, whole genome shotgun sequence	381..818	Amikacin, Tobramycin	NC_003197	fosA7	96.22	423/423	ABNSOG010000066.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314465 SAMN37736303-rid19671083.denovo.066, whole genome shotgun sequence	16704..17126	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	ABNSOG010000157.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314465 SAMN37736303-rid19671083.guided.114, whole genome shotgun sequence	4735..5157	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNSOG010000127.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314465 SAMN37736303-rid19671083.denovo.132, whole genome shotgun sequence	1709..1839	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNSOG010000102.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314465 SAMN37736303-rid19671083.denovo.105, whole genome shotgun sequence	102..243																																																avrA	ABNSOG010000018.1	61413..62282	99.195	870	0						
GCA_032624615.1_PDT001924200.1_genomic.fna	Salmonella_enterica	0.5227	50.062 KB	29	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	-:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	-	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:l,z13:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNSOF010000057.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314513 SAMN37736305-rid19671073.denovo.057, whole genome shotgun sequence	13054..13491	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSOF010000079.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314513 SAMN37736305-rid19671073.denovo.079, whole genome shotgun sequence	6015..6851	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNSOF010000079.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314513 SAMN37736305-rid19671073.denovo.079, whole genome shotgun sequence	4984..5797	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	V00359	aph(3'')-Ib	100	804/804	ABNSOF010000079.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314513 SAMN37736305-rid19671073.denovo.079, whole genome shotgun sequence	6851..7654	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNSOF010000168.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314513 SAMN37736305-rid19671073.guided.100, whole genome shotgun sequence	13945..14382	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSOF010000169.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314513 SAMN37736305-rid19671073.guided.115, whole genome shotgun sequence	7939..8775	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSOF010000169.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314513 SAMN37736305-rid19671073.guided.115, whole genome shotgun sequence	7136..7939	Streptomycin	AF321551	aph(3')-Ia	99.75	814/816	ABNSOF010000170.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314513 SAMN37736305-rid19671073.guided.124, whole genome shotgun sequence	290..1103	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	V00359	sul2	99.88	816/816	ABNSOF010000075.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314513 SAMN37736305-rid19671073.denovo.075, whole genome shotgun sequence	3077..3892	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNSOF010000172.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314513 SAMN37736305-rid19671073.guided.139, whole genome shotgun sequence	714..1529	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNSOF010000126.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314513 SAMN37736305-rid19671073.denovo.131, whole genome shotgun sequence	2287..3492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSOF010000171.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314513 SAMN37736305-rid19671073.guided.136, whole genome shotgun sequence	2310..3515	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSOF010000074.1	19103..19971	99.655	869	0						
GCA_032624635.1_PDT001924199.1_genomic.fna	Salmonella_enterica	0.5208	54.132 KB	28	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSOI010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314467 SAMN37736304-rid19671723.denovo.012, whole genome shotgun sequence	12536..12973	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSOI010000207.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314467 SAMN37736304-rid19671723.guided.079, whole genome shotgun sequence	7789..8226	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNSOI010000134.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314467 SAMN37736304-rid19671723.denovo.137, whole genome shotgun sequence	3094..3224	enterobacteriales	IncHI2A	99.52	630 / 630	ABNSOI010000148.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314467 SAMN37736304-rid19671723.denovo.151, whole genome shotgun sequence	582..1211		enterobacteriales	IncX1	100	373 / 373	ABNSOI010000150.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314467 SAMN37736304-rid19671723.denovo.153, whole genome shotgun sequence	2153..2525																																									avrA	ABNSOI010000035.1	39484..40353	99.655	870	0						
GCA_032624655.1_PDT001924198.1_genomic.fna	Salmonella_enterica	0.5216	42.435 KB	33	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aac(6')-Iaa,aph(6)-Id,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSOJ010000062.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314458 SAMN37736294-rid19671063.denovo.063, whole genome shotgun sequence	15491..15928	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSOJ010000136.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314458 SAMN37736294-rid19671063.denovo.139, whole genome shotgun sequence	594..1430	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABNSOJ010000232.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314458 SAMN37736294-rid19671063.guided.062, whole genome shotgun sequence	15522..15959	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSOJ010000235.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314458 SAMN37736294-rid19671063.guided.156, whole genome shotgun sequence	634..1470	Streptomycin	M28829	tet(B)	100	1206/1206	ABNSOJ010000158.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314458 SAMN37736294-rid19671063.denovo.162, whole genome shotgun sequence	1860..3065	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSOJ010000236.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314458 SAMN37736294-rid19671063.guided.192, whole genome shotgun sequence	93..1298	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNSOJ010000151.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314458 SAMN37736294-rid19671063.denovo.154, whole genome shotgun sequence	1351..2032	enterobacteriales	IncFII	96.95	262 / 261	ABNSOJ010000136.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314458 SAMN37736294-rid19671063.denovo.139, whole genome shotgun sequence	2053..2314		enterobacteriales	IncFII	96.95	262 / 261	ABNSOJ010000235.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314458 SAMN37736294-rid19671063.guided.156, whole genome shotgun sequence	2093..2354		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNSOJ010000130.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314458 SAMN37736294-rid19671063.denovo.133, whole genome shotgun sequence	4498..4639		enterobacteriales	IncX1	100	373 / 373	ABNSOJ010000160.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314458 SAMN37736294-rid19671063.denovo.164, whole genome shotgun sequence	2732..3104																											avrA	ABNSOJ010000027.1	39484..40353	99.655	870	0						
GCA_032624695.1_PDT001924197.1_genomic.fna	Salmonella_enterica	0.5223	53.938 KB	29	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSOH010000063.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314456 SAMN37736040-rid19671053.denovo.064, whole genome shotgun sequence	12521..12958	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSOH010000180.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314456 SAMN37736040-rid19671053.guided.076, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	100	373 / 373	ABNSOH010000153.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314456 SAMN37736040-rid19671053.denovo.156, whole genome shotgun sequence	1084..1456																																																						avrA	ABNSOH010000040.1	39484..40353	99.655	870	0						
GCA_032624875.1_PDT001924186.1_genomic.fna	Salmonella_enterica	0.5215	101.177 KB	18	aroC_180,dnaN_161,hemD_132,hisD_21,purE_12,sucA_13,thrA_4	532	-:d:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_180	dnaN	100	100	dnaN_161	hemD	100	100	hemD_132	hisD	100	100	hisD_21	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	d	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:d:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSOW010000004.1 Salmonella enterica subsp. enterica serovar Barranquilla strain FSIS32310264 SAMN37710880-rid19669973.denovo.004, whole genome shotgun sequence	13101..13538	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSOW010000116.1 Salmonella enterica subsp. enterica serovar Barranquilla strain FSIS32310264 SAMN37710880-rid19669973.guided.081, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSOW010000011.1	114872..115741	99.54	870	0						
GCA_032624975.1_PDT001924181.1_genomic.fna	Salmonella_enterica	0.5219	159.84 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSOX010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310271 SAMN37710869-rid19670923.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSOX010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310271 SAMN37710869-rid19670923.denovo.45, whole genome shotgun sequence	15881..16672	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSOX010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310271 SAMN37710869-rid19670923.denovo.45, whole genome shotgun sequence	15881..16672	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNSOX010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310271 SAMN37710869-rid19670923.guided.32, whole genome shotgun sequence	24839..25276	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSOX010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310271 SAMN37710869-rid19670923.guided.56, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSOX010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310271 SAMN37710869-rid19670923.guided.56, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNSOX010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310271 SAMN37710869-rid19670923.denovo.45, whole genome shotgun sequence	14537..15376	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSOX010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310271 SAMN37710869-rid19670923.guided.56, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSOX010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310271 SAMN37710869-rid19670923.denovo.45, whole genome shotgun sequence	821..2020	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSOX010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310271 SAMN37710869-rid19670923.guided.66, whole genome shotgun sequence	1731..2930	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSOX010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310271 SAMN37710869-rid19670923.denovo.38, whole genome shotgun sequence	9109..9668																																																						avrA	ABNSOX010000002.1	93814..94683	99.655	870	0						
GCA_032624995.1_PDT001924179.1_genomic.fna	Salmonella_enterica	0.5208	137.049 KB	12	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNSPA010000010.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS32310273 SAMN37710864-rid19671693.denovo.10, whole genome shotgun sequence	147893..148330	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNSPA010000079.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS32310273 SAMN37710864-rid19671693.guided.64, whole genome shotgun sequence	1487..1924	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNSPA010000002.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS32310273 SAMN37710864-rid19671693.denovo.02, whole genome shotgun sequence	160606..161028	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNSPA010000077.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS32310273 SAMN37710864-rid19671693.guided.47, whole genome shotgun sequence	13268..13690	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNSPA010000055.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS32310273 SAMN37710864-rid19671693.denovo.57, whole genome shotgun sequence	186..316																																																						avrA	ABNSPA010000001.1	126172..127041	99.655	870	0						
GCA_032625015.1_PDT001924180.1_genomic.fna	Salmonella_enterica	0.5216	194.247 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	11	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSOZ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSOZ010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.denovo.33, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSOZ010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.denovo.33, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNSOZ010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.denovo.45, whole genome shotgun sequence	1053..2078	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNSOZ010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.denovo.45, whole genome shotgun sequence	48..824	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNSOZ010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.denovo.78, whole genome shotgun sequence	92..907	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aac(6')-Iaa	97.49	438/438	ABNSOZ010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.guided.25, whole genome shotgun sequence	39054..39491	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSOZ010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.guided.50, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSOZ010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.guided.50, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNSOZ010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.guided.60, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNSOZ010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.guided.60, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNSOZ010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.guided.74, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	blaCTX-M-65	100	876/876	ABNSOZ010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.denovo.71, whole genome shotgun sequence	901..1776	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNSOZ010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.guided.70, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNSOZ010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.denovo.67, whole genome shotgun sequence	320..736	Fosfomycin	AB522970	fosA3	100	417/417	ABNSOZ010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.guided.73, whole genome shotgun sequence	361..777	Fosfomycin	AB522970	floR	98.19	1214/1215	ABNSOZ010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.denovo.45, whole genome shotgun sequence	8677..9890	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNSOZ010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.guided.56, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNSOZ010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.denovo.33, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSOZ010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.guided.50, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSOZ010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.denovo.33, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSOZ010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.guided.46, whole genome shotgun sequence	7833..9032	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNSOZ010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.denovo.53, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNSOZ010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.guided.57, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSOZ010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310272 SAMN37710863-rid19670913.denovo.37, whole genome shotgun sequence	9109..9668																																																						avrA	ABNSOZ010000002.1	149551..150420	99.655	870	0						
GCA_032625035.1_PDT001924184.1_genomic.fna	Salmonella_enterica	0.5232	45.743 KB	32	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSOY010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.denovo.062, whole genome shotgun sequence	12391..12828	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSOY010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.denovo.085, whole genome shotgun sequence	18521..19312	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSOY010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.denovo.085, whole genome shotgun sequence	18521..19312	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNSOY010000139.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.denovo.145, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNSOY010000139.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.denovo.145, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNSOY010000212.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.guided.067, whole genome shotgun sequence	14157..14594	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSOY010000214.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.guided.113, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSOY010000214.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.guided.113, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNSOY010000217.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.guided.144, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNSOY010000217.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.guided.144, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNSOY010000168.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.denovo.175, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNSOY010000219.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.guided.177, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNSOY010000136.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.denovo.141, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNSOY010000218.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.guided.158, whole genome shotgun sequence	465..1678	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNSOY010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.denovo.085, whole genome shotgun sequence	17177..18016	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSOY010000214.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.guided.113, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSOY010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.denovo.085, whole genome shotgun sequence	3461..4660	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSOY010000215.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.guided.130, whole genome shotgun sequence	1924..3123	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSOY010000149.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310222 SAMN37710878-rid19670953.denovo.155, whole genome shotgun sequence	2343..2902																																																						avrA	ABNSOY010000039.1	39430..40299	99.655	870	0						
GCA_032625055.1_PDT001924178.1_genomic.fna	Salmonella_enterica	0.523	46.535 KB	34	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	ColpVC,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSPC010000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314444 SAMN37710862-rid19670903.denovo.018, whole genome shotgun sequence	12505..12942	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNSPC010000215.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314444 SAMN37710862-rid19670903.guided.069, whole genome shotgun sequence	12438..12875	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNSPC010000138.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314444 SAMN37710862-rid19670903.denovo.142, whole genome shotgun sequence	1598..2743	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNSPC010000218.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314444 SAMN37710862-rid19670903.guided.140, whole genome shotgun sequence	1629..2774	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNSPC010000100.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314444 SAMN37710862-rid19670903.denovo.101, whole genome shotgun sequence	10341..11156	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNSPC010000219.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314444 SAMN37710862-rid19670903.guided.157, whole genome shotgun sequence	3155..3970	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNSPC010000100.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314444 SAMN37710862-rid19670903.denovo.101, whole genome shotgun sequence	13333..14532	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSPC010000220.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314444 SAMN37710862-rid19670903.guided.162, whole genome shotgun sequence	1426..2625	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	ColpVC	98.96	193 / 193	ABNSPC010000176.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314444 SAMN37710862-rid19670903.denovo.182, whole genome shotgun sequence	805..997	enterobacteriales	IncC	100	417 / 417	ABNSPC010000038.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314444 SAMN37710862-rid19670903.denovo.038, whole genome shotgun sequence	38349..38765																																																avrA	ABNSPC010000003.1	94139..95008	99.885	870	0						
GCA_032625075.1_PDT001924177.1_genomic.fna	Salmonella_enterica	0.5229	58.283 KB	29	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSPB010000017.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.denovo.017, whole genome shotgun sequence	12492..12929	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSPB010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.denovo.077, whole genome shotgun sequence	18494..19285	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSPB010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.denovo.077, whole genome shotgun sequence	18494..19285	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNSPB010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.denovo.130, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNSPB010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.denovo.130, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNSPB010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.guided.097, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSPB010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.guided.097, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNSPB010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.guided.113, whole genome shotgun sequence	8799..9236	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNSPB010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.guided.135, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNSPB010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.guided.135, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNSPB010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.denovo.138, whole genome shotgun sequence	920..1795	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNSPB010000172.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.guided.144, whole genome shotgun sequence	222..1097	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNSPB010000122.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.denovo.126, whole genome shotgun sequence	2826..4039	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNSPB010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.guided.131, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNSPB010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.denovo.077, whole genome shotgun sequence	17150..17989	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSPB010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.guided.097, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSPB010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.denovo.077, whole genome shotgun sequence	3434..4633	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSPB010000169.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.guided.129, whole genome shotgun sequence	888..2087	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSPB010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314441 SAMN37710859-rid19670893.denovo.091, whole genome shotgun sequence	14637..15196																																																						avrA	ABNSPB010000043.1	39689..40558	99.655	870	0						
GCA_032625095.1_PDT001924176.1_genomic.fna	Salmonella_enterica	0.5229	62.908 KB	25	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSPE010000024.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314442 SAMN37710860-rid19669963.denovo.024, whole genome shotgun sequence	52258..52695	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSPE010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314442 SAMN37710860-rid19669963.denovo.077, whole genome shotgun sequence	18440..19231	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSPE010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314442 SAMN37710860-rid19669963.denovo.077, whole genome shotgun sequence	18440..19231	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNSPE010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314442 SAMN37710860-rid19669963.guided.069, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSPE010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314442 SAMN37710860-rid19669963.guided.086, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSPE010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314442 SAMN37710860-rid19669963.guided.086, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNSPE010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314442 SAMN37710860-rid19669963.denovo.077, whole genome shotgun sequence	17096..17935	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSPE010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314442 SAMN37710860-rid19669963.guided.086, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSPE010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314442 SAMN37710860-rid19669963.denovo.077, whole genome shotgun sequence	3380..4579	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSPE010000159.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314442 SAMN37710860-rid19669963.guided.134, whole genome shotgun sequence	1002..2201	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSPE010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314442 SAMN37710860-rid19669963.denovo.114, whole genome shotgun sequence	2229..2788																																																						avrA	ABNSPE010000038.1	39528..40397	99.655	870	0						
GCA_032625115.1_PDT001924175.1_genomic.fna	Salmonella_enterica	0.5227	65.185 KB	23	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSPH010000019.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.denovo.019, whole genome shotgun sequence	12469..12906	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSPH010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.denovo.067, whole genome shotgun sequence	22834..23625	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSPH010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.denovo.067, whole genome shotgun sequence	22834..23625	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	99.9	1026/1026	ABNSPH010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.denovo.120, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNSPH010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.denovo.120, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNSPH010000162.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.guided.050, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSPH010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.guided.066, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSPH010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.guided.066, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	99.9	1026/1026	ABNSPH010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.guided.123, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNSPH010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.guided.123, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNSPH010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.denovo.105, whole genome shotgun sequence	8713..9588	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNSPH010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.guided.147, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNSPH010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.denovo.118, whole genome shotgun sequence	3168..4381	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNSPH010000165.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.guided.121, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNSPH010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.denovo.067, whole genome shotgun sequence	21490..22329	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSPH010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.guided.066, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSPH010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.denovo.067, whole genome shotgun sequence	7774..8973	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSPH010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.guided.066, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSPH010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314439 SAMN37710857-rid19670883.denovo.084, whole genome shotgun sequence	14634..15193																																																						avrA	ABNSPH010000014.1	93814..94683	99.655	870	0						
GCA_032625135.1_PDT001924174.1_genomic.fna	Salmonella_enterica	0.5234	53.302 KB	30	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSPF010000058.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS22314386 SAMN37710824-rid19670873.denovo.058, whole genome shotgun sequence	12462..12899	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSPF010000199.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS22314386 SAMN37710824-rid19670873.guided.072, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSPF010000011.1	81650..82519	99.195	870	0						
GCA_032625155.1_PDT001924173.1_genomic.fna	Salmonella_enterica	0.5218	68.231 KB	24	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:g,m,s:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	1	IncN	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	g,m,s	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSPG010000024.1 Salmonella enterica subsp. enterica serovar Lubbock strain FSIS22314437 SAMN37710825-rid19670863.denovo.024, whole genome shotgun sequence	52313..52750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSPG010000146.1 Salmonella enterica subsp. enterica serovar Lubbock strain FSIS22314437 SAMN37710825-rid19670863.guided.061, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	tet(A)	99.75	1200/1200	ABNSPG010000048.1 Salmonella enterica subsp. enterica serovar Lubbock strain FSIS22314437 SAMN37710825-rid19670863.denovo.048, whole genome shotgun sequence	19381..20580	Doxycycline, Tetracycline	AY196695	tet(A)	99.75	1200/1200	ABNSPG010000148.1 Salmonella enterica subsp. enterica serovar Lubbock strain FSIS22314437 SAMN37710825-rid19670863.guided.118, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AY196695																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncN	99.81	514 / 514	ABNSPG010000048.1 Salmonella enterica subsp. enterica serovar Lubbock strain FSIS22314437 SAMN37710825-rid19670863.denovo.048, whole genome shotgun sequence	611..1124																																																						avrA	ABNSPG010000002.1	102766..103635	99.195	870	0						
GCA_032625175.1_PDT001924170.1_genomic.fna	Salmonella_enterica	0.5226	51.904 KB	29	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNSPL010000021.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314454 SAMN37710822-rid19670833.denovo.021, whole genome shotgun sequence	12459..12896	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNSPL010000167.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314454 SAMN37710822-rid19670833.guided.079, whole genome shotgun sequence	8192..8629	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNSPL010000108.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314454 SAMN37710822-rid19670833.denovo.110, whole genome shotgun sequence	2909..4108	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSPL010000168.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314454 SAMN37710822-rid19670833.guided.113, whole genome shotgun sequence	2628..3827	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNSPL010000108.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314454 SAMN37710822-rid19670833.denovo.110, whole genome shotgun sequence	9471..9612	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNSPL010000168.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314454 SAMN37710822-rid19670833.guided.113, whole genome shotgun sequence	9190..9331																																																avrA	ABNSPL010000015.1	61952..62821	99.54	870	0						
GCA_032625195.1_PDT001924172.1_genomic.fna	Salmonella_enterica	0.5229	68 KB	25	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSPD010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314361 SAMN37710827-rid19670853.denovo.004, whole genome shotgun sequence	17258..17695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSPD010000148.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314361 SAMN37710827-rid19670853.guided.066, whole genome shotgun sequence	15496..15933	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSPD010000090.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314361 SAMN37710827-rid19670853.denovo.093, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNSPD010000103.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314361 SAMN37710827-rid19670853.denovo.106, whole genome shotgun sequence	3369..3630																																																avrA	ABNSPD010000015.1	81622..82491	99.54	870	0						
GCA_032625215.1_PDT001924171.1_genomic.fna	Salmonella_enterica	0.5227	72.019 KB	20	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSPI010000021.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314452 SAMN37710820-rid19670843.denovo.021, whole genome shotgun sequence	16074..16511	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSPI010000145.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314452 SAMN37710820-rid19670843.guided.051, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSPI010000087.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314452 SAMN37710820-rid19670843.denovo.090, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNSPI010000092.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314452 SAMN37710820-rid19670843.denovo.095, whole genome shotgun sequence	3382..3643																																																avrA	ABNSPI010000003.1	81622..82491	99.54	870	0						
GCA_032625235.1_PDT001924169.1_genomic.fna	Salmonella_enterica	0.5231	59.385 KB	27	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSPK010000015.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314455 SAMN37710823-rid19671683.denovo.015, whole genome shotgun sequence	17262..17699	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSPK010000156.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314455 SAMN37710823-rid19671683.guided.026, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSPK010000130.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314455 SAMN37710823-rid19671683.denovo.133, whole genome shotgun sequence	1341..1983	enterobacteriales	IncFII(S)	100	262 / 262	ABNSPK010000107.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314455 SAMN37710823-rid19671683.denovo.110, whole genome shotgun sequence	3391..3652																																																avrA	ABNSPK010000040.1	43668..44537	99.54	870	0						
GCA_032625255.1_PDT001924168.1_genomic.fna	Salmonella_enterica	0.5226	57.778 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSPO010000002.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314449 SAMN37710817-rid19670823.denovo.002, whole genome shotgun sequence	12057..12494	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNSPO010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314449 SAMN37710817-rid19670823.guided.103, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSPO010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314449 SAMN37710817-rid19670823.denovo.112, whole genome shotgun sequence	2135..2694																																																						avrA	ABNSPO010000039.1	39524..40393	99.655	870	0						
GCA_032625335.1_PDT001924163.1_genomic.fna	Salmonella_enterica	0.5222	75.48 KB	21	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	2	aac(6')-Iaa,aac(6')-Iaa,tet(C),tet(C)	1	parC_p.T57S	2	Col(pHAD28),ColE10	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNSPP010000002.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314446 SAMN37710809-rid19670793.denovo.002, whole genome shotgun sequence	206406..206843	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNSPP010000141.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314446 SAMN37710809-rid19670793.guided.033, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197	tet(C)	99.83	1191/1191	ABNSPP010000084.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314446 SAMN37710809-rid19670793.denovo.087, whole genome shotgun sequence	1430..2620	Doxycycline, Tetracycline	AF055345	tet(C)	99.83	1191/1191	ABNSPP010000144.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314446 SAMN37710809-rid19670793.guided.093, whole genome shotgun sequence	1469..2659	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNSPP010000098.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314446 SAMN37710809-rid19670793.denovo.102, whole genome shotgun sequence	557..687	enterobacteriales	ColE10	100	177 / 177	ABNSPP010000084.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314446 SAMN37710809-rid19670793.denovo.087, whole genome shotgun sequence	7394..7570																																																avrA	ABNSPP010000011.1	107157..108026	99.54	870	0						
GCA_032625415.1_PDT001924159.1_genomic.fna	Salmonella_enterica	0.5171	99.25 KB	16	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSPV010000021.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310213 SAMN37710793-rid19671673.denovo.021, whole genome shotgun sequence	1025..1462	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSPV010000136.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310213 SAMN37710793-rid19671673.guided.060, whole genome shotgun sequence	15330..15767	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNSPV010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310213 SAMN37710793-rid19671673.denovo.046, whole genome shotgun sequence	28959..29285	enterobacteriales	IncHI2A	99.52	630 / 630	ABNSPV010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310213 SAMN37710793-rid19671673.denovo.061, whole genome shotgun sequence	14226..14855		enterobacteriales	IncX1	100	373 / 373	ABNSPV010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310213 SAMN37710793-rid19671673.denovo.074, whole genome shotgun sequence	2218..2590																																									avrA	ABNSPV010000038.1	39606..40475	99.655	870	0						
GCA_032625455.1_PDT001924158.1_genomic.fna	Salmonella_enterica	0.5229	141.367 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSPU010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310149 SAMN37710795-rid19670753.denovo.01, whole genome shotgun sequence	382145..382582	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNSPU010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310149 SAMN37710795-rid19670753.guided.44, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSPU010000005.1	95321..96190	99.655	870	0						
GCA_032625475.1_PDT001924156.1_genomic.fna	Salmonella_enterica	0.5192	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSW010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSW010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSW010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSW010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSW010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSW010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSW010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.denovo.34, whole genome shotgun sequence	33232..34107	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSW010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.guided.59, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSW010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.denovo.34, whole genome shotgun sequence	38748..39404	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSW010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSW010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSW010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSW010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.denovo.34, whole genome shotgun sequence	29222..30421	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSW010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSW010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSW010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.guided.65, whole genome shotgun sequence	2607..3080	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSW010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.denovo.51, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSW010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSW010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZY2306090230 isolate ZY2306090230 SAMEA114440230-rid19670733.denovo.40, whole genome shotgun sequence	11245..11618																																																				
GCA_032625495.1_PDT001924155.1_genomic.fna	Salmonella_enterica	0.5192	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSX010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSX010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSX010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSX010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.guided.41, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSX010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSX010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSX010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.denovo.32, whole genome shotgun sequence	33160..34035	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSX010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSX010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.denovo.32, whole genome shotgun sequence	38676..39332	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSX010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.guided.62, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSX010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSX010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSX010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.denovo.32, whole genome shotgun sequence	29150..30349	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSX010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSX010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSX010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.guided.64, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSX010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSX010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSX010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306240362 isolate ZV2306240362 SAMEA114440229-rid19670723.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032625515.1_PDT001924154.1_genomic.fna	Salmonella_enterica	0.5192	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSY010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSY010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSY010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSY010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSY010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSY010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSY010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.denovo.33, whole genome shotgun sequence	33233..34108	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSY010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSY010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.denovo.33, whole genome shotgun sequence	38749..39405	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSY010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSY010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSY010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSY010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.denovo.33, whole genome shotgun sequence	29223..30422	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSY010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSY010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.denovo.59, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSY010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSY010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSY010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSY010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306230390 isolate ZV2306230390 SAMEA114440228-rid19670713.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032625535.1_PDT001924153.1_genomic.fna	Salmonella_enterica	0.5192	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDSZ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSZ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSZ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDSZ010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDSZ010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDSZ010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDSZ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.denovo.31, whole genome shotgun sequence	33221..34096	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDSZ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDSZ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.denovo.31, whole genome shotgun sequence	38737..39393	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDSZ010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDSZ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDSZ010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDSZ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.denovo.31, whole genome shotgun sequence	29211..30410	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDSZ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDSZ010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDSZ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDSZ010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDSZ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDSZ010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain ZV2306210243 isolate ZV2306210243 SAMEA114440227-rid19670703.denovo.37, whole genome shotgun sequence	11245..11618																																																				
GCA_032625555.1_PDT001924150.1_genomic.fna	Salmonella_enterica	0.5199	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTC010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain S268 isolate S268 SAMEA114440221-rid19670673.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQDTC010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain S268 isolate S268 SAMEA114440221-rid19670673.guided.35, whole genome shotgun sequence	13793..14227	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032625575.1_PDT001924152.1_genomic.fna	Salmonella_enterica	0.5192	143.152 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTB010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTB010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.denovo.60, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTB010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.denovo.60, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTB010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTB010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.guided.61, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTB010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.guided.61, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTB010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.denovo.35, whole genome shotgun sequence	33231..34106	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTB010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.guided.64, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTB010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.denovo.35, whole genome shotgun sequence	38747..39403	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTB010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.guided.55, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTB010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.denovo.60, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTB010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.guided.61, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTB010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.denovo.35, whole genome shotgun sequence	29221..30420	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTB010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.guided.65, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTB010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.denovo.68, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTB010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.guided.69, whole genome shotgun sequence	2529..3002	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTB010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.denovo.56, whole genome shotgun sequence	3356..3915	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTB010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.denovo.17, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTB010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain zv2302087 isolate zv2302087 SAMEA114440224-rid19670693.denovo.45, whole genome shotgun sequence	11245..11618																																																				
GCA_032625595.1_PDT001924149.1_genomic.fna	Salmonella_enterica	0.5203	153.387 KB	11	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTD010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain S265 isolate S265 SAMEA114440218-rid19671663.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQDTD010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain S265 isolate S265 SAMEA114440218-rid19671663.guided.32, whole genome shotgun sequence	13793..14227	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																																																																																						
GCA_032625615.1_PDT001924151.1_genomic.fna	Salmonella_enterica	0.5205	171.949 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTA010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain S269 isolate S269 SAMEA114440222-rid19670683.denovo.11, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQDTA010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain S269 isolate S269 SAMEA114440222-rid19670683.guided.27, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																																						
GCA_032625635.1_PDT001924148.1_genomic.fna	Salmonella_enterica	0.519	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTE010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTE010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTE010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTE010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTE010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTE010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTE010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.denovo.34, whole genome shotgun sequence	33193..34068	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTE010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTE010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.denovo.34, whole genome shotgun sequence	38709..39365	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTE010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTE010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTE010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTE010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.denovo.34, whole genome shotgun sequence	29183..30382	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTE010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTE010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTE010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTE010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTE010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTE010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164156 isolate R1164156 SAMEA114440216-rid19670663.denovo.40, whole genome shotgun sequence	11245..11618																																																				
GCA_032625655.1_PDT001924147.1_genomic.fna	Salmonella_enterica	0.519	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTF010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTF010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTF010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTF010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTF010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTF010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTF010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.denovo.34, whole genome shotgun sequence	33219..34094	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTF010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTF010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.denovo.34, whole genome shotgun sequence	38735..39391	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTF010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTF010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTF010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTF010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.denovo.34, whole genome shotgun sequence	29209..30408	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTF010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTF010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTF010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTF010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTF010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTF010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain N227748 isolate N227748 SAMEA114440214-rid19670653.denovo.40, whole genome shotgun sequence	11245..11618																																																				
GCA_032625675.1_PDT001924146.1_genomic.fna	Salmonella_enterica	0.5192	153.025 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTG010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTG010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTG010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTG010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTG010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTG010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTG010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.denovo.33, whole genome shotgun sequence	33217..34092	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTG010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTG010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.denovo.33, whole genome shotgun sequence	38733..39389	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTG010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTG010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTG010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTG010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.denovo.33, whole genome shotgun sequence	29207..30406	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTG010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTG010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTG010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTG010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTG010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTG010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K331839 isolate K331839 SAMEA114440213-rid19670643.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032625695.1_PDT001924145.1_genomic.fna	Salmonella_enterica	0.5193	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTH010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTH010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTH010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTH010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTH010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTH010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTH010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.denovo.34, whole genome shotgun sequence	33238..34113	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTH010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.guided.59, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTH010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.denovo.34, whole genome shotgun sequence	38754..39410	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTH010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTH010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTH010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTH010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.denovo.34, whole genome shotgun sequence	29228..30427	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTH010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQDTH010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.guided.61, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTH010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.denovo.64, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTH010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.guided.65, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTH010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.denovo.50, whole genome shotgun sequence	3487..4046	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTH010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTH010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C193583 isolate C193583 SAMEA114440211-rid19670633.denovo.40, whole genome shotgun sequence	11245..11618																																																				
GCA_032625715.1_PDT001924142.1_genomic.fna	Salmonella_enterica	0.5194	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTJ010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTJ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTJ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTJ010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTJ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTJ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTJ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.denovo.33, whole genome shotgun sequence	33233..34108	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTJ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.guided.59, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTJ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.denovo.33, whole genome shotgun sequence	38749..39405	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTJ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTJ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTJ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTJ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.denovo.33, whole genome shotgun sequence	29223..30422	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTJ010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTJ010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTJ010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.guided.64, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTJ010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.denovo.51, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTJ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTJ010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A98611 isolate A98611 SAMEA114440207-rid19670623.denovo.40, whole genome shotgun sequence	11245..11618																																																				
GCA_032625735.1_PDT001924144.1_genomic.fna	Salmonella_enterica	0.5192	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTI010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTI010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTI010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTI010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTI010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTI010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTI010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.denovo.34, whole genome shotgun sequence	33233..34108	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTI010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.guided.59, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTI010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.denovo.34, whole genome shotgun sequence	38749..39405	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTI010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTI010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTI010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTI010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.denovo.34, whole genome shotgun sequence	29223..30422	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTI010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTI010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTI010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.guided.64, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTI010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.denovo.51, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTI010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTI010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120251 isolate B120251 SAMEA114440210-rid19671653.denovo.40, whole genome shotgun sequence	11245..11618																																																				
GCA_032625755.1_PDT001924139.1_genomic.fna	Salmonella_enterica	0.5196	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTM010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTM010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTM010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTM010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.guided.44, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTM010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTM010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTM010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.denovo.33, whole genome shotgun sequence	33162..34037	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTM010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTM010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.denovo.33, whole genome shotgun sequence	38678..39334	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTM010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.guided.66, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTM010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTM010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTM010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.denovo.33, whole genome shotgun sequence	29152..30351	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTM010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTM010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.denovo.60, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTM010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTM010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.denovo.48, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTM010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTM010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105461 isolate A105461 SAMEA114440202-rid19671643.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032625775.1_PDT001924140.1_genomic.fna	Salmonella_enterica	0.5193	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTK010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTK010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTK010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTK010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTK010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.denovo.33, whole genome shotgun sequence	33235..34110	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTK010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTK010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.denovo.33, whole genome shotgun sequence	38751..39407	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTK010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTK010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTK010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.denovo.33, whole genome shotgun sequence	29225..30424	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTK010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTK010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTK010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTK010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTK010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTK010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55239 isolate A55239 SAMEA114440203-rid19670603.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032625795.1_PDT001924138.1_genomic.fna	Salmonella_enterica	0.5191	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTN010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTN010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTN010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTN010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.guided.44, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTN010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTN010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTN010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.denovo.33, whole genome shotgun sequence	33214..34089	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTN010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTN010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.denovo.33, whole genome shotgun sequence	38730..39386	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTN010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTN010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTN010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTN010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.denovo.33, whole genome shotgun sequence	29204..30403	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTN010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTN010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTN010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTN010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTN010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTN010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A105067 isolate A105067 SAMEA114440201-rid19670593.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032625815.1_PDT001924141.1_genomic.fna	Salmonella_enterica	0.5191	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTL010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTL010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTL010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTL010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTL010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTL010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTL010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.denovo.34, whole genome shotgun sequence	33211..34086	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTL010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTL010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.denovo.34, whole genome shotgun sequence	38727..39383	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTL010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.guided.51, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTL010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTL010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTL010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.denovo.34, whole genome shotgun sequence	29201..30400	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTL010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTL010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTL010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTL010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.denovo.49, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTL010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTL010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A88275 isolate A88275 SAMEA114440206-rid19670613.denovo.40, whole genome shotgun sequence	11245..11618																																																				
GCA_032625835.1_PDT001924137.1_genomic.fna	Salmonella_enterica	0.5189	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTO010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTO010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTO010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTO010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.guided.41, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTO010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTO010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTO010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.denovo.32, whole genome shotgun sequence	33217..34092	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTO010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTO010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.denovo.32, whole genome shotgun sequence	38733..39389	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTO010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTO010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTO010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTO010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.denovo.32, whole genome shotgun sequence	29207..30406	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTO010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTO010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTO010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTO010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.denovo.49, whole genome shotgun sequence	3487..4046	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTO010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTO010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101367 isolate A101367 SAMEA114440199-rid19671633.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032625855.1_PDT001924134.1_genomic.fna	Salmonella_enterica	0.5192	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTQ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTQ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTQ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTQ010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTQ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTQ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTQ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.denovo.32, whole genome shotgun sequence	33243..34118	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTQ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.guided.59, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTQ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.denovo.32, whole genome shotgun sequence	38759..39415	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTQ010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTQ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTQ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTQ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.denovo.32, whole genome shotgun sequence	29233..30432	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTQ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTQ010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTQ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTQ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.denovo.50, whole genome shotgun sequence	3491..4050	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTQ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTQ010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 750 isolate 750 SAMEA114440196-rid19671623.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032625875.1_PDT001924136.1_genomic.fna	Salmonella_enterica	0.5193	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTP010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTP010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTP010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTP010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.guided.45, whole genome shotgun sequence	13230..13664	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTP010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTP010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTP010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.denovo.34, whole genome shotgun sequence	33186..34061	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTP010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.guided.59, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTP010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.denovo.34, whole genome shotgun sequence	38702..39358	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTP010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTP010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTP010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTP010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.denovo.34, whole genome shotgun sequence	29176..30375	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTP010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTP010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTP010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.guided.64, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTP010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.denovo.51, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTP010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTP010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 93 isolate 93 SAMEA114440198-rid19670583.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032625895.1_PDT001924135.1_genomic.fna	Salmonella_enterica	0.5191	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTR010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTR010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTR010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTR010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTR010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTR010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTR010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.denovo.32, whole genome shotgun sequence	33196..34071	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTR010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTR010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.denovo.32, whole genome shotgun sequence	38712..39368	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTR010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTR010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTR010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTR010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.denovo.32, whole genome shotgun sequence	29186..30385	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTR010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.guided.62, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTR010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.denovo.59, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTR010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.guided.60, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTR010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTR010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTR010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 828 isolate 828 SAMEA114440197-rid19670573.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032625915.1_PDT001924133.1_genomic.fna	Salmonella_enterica	0.5192	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTS010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTS010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTS010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTS010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTS010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTS010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.denovo.32, whole genome shotgun sequence	33213..34088	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTS010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.denovo.32, whole genome shotgun sequence	38729..39385	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTS010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTS010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTS010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.denovo.32, whole genome shotgun sequence	29203..30402	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTS010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTS010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.denovo.60, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTS010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.guided.62, whole genome shotgun sequence	2607..3080	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTS010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.denovo.46, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTS010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTS010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 738 isolate 738 SAMEA114440195-rid19670563.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032625935.1_PDT001924132.1_genomic.fna	Salmonella_enterica	0.519	149.138 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTT010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTT010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.denovo.56, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTT010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.denovo.56, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTT010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTT010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.guided.57, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTT010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.guided.57, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTT010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.denovo.36, whole genome shotgun sequence	33237..34112	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTT010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.guided.60, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTT010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.denovo.36, whole genome shotgun sequence	38753..39409	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTT010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.guided.51, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTT010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.denovo.56, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTT010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.guided.57, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTT010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.denovo.36, whole genome shotgun sequence	29227..30426	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTT010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.guided.61, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTT010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.denovo.64, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTT010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.guided.65, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTT010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.denovo.52, whole genome shotgun sequence	3487..4046	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTT010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTT010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 736 isolate 736 SAMEA114440194-rid19671613.denovo.42, whole genome shotgun sequence	11245..11618																																																				
GCA_032625955.1_PDT001924130.1_genomic.fna	Salmonella_enterica	0.5191	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTV010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTV010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTV010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTV010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTV010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTV010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTV010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.denovo.34, whole genome shotgun sequence	33191..34066	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTV010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTV010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.denovo.34, whole genome shotgun sequence	38707..39363	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTV010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTV010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTV010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTV010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.denovo.34, whole genome shotgun sequence	29181..30380	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTV010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTV010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTV010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTV010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTV010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTV010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 646 isolate 646 SAMEA114440189-rid19670543.denovo.40, whole genome shotgun sequence	11245..11618																																																				
GCA_032625975.1_PDT001924131.1_genomic.fna	Salmonella_enterica	0.5192	149.139 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTU010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTU010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTU010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTU010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTU010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTU010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTU010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.denovo.33, whole genome shotgun sequence	33207..34082	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTU010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.guided.59, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTU010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.denovo.33, whole genome shotgun sequence	38723..39379	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTU010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTU010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTU010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTU010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.denovo.33, whole genome shotgun sequence	29197..30396	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTU010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTU010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTU010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTU010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTU010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.denovo.17, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTU010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 670 isolate 670 SAMEA114440190-rid19670553.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032625995.1_PDT001924129.1_genomic.fna	Salmonella_enterica	0.5194	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTW010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTW010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTW010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTW010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.guided.39, whole genome shotgun sequence	6219..6653	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTW010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTW010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTW010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.denovo.33, whole genome shotgun sequence	33211..34086	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTW010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.guided.60, whole genome shotgun sequence	1290..2165	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTW010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.denovo.33, whole genome shotgun sequence	38727..39383	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTW010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTW010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTW010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTW010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.denovo.33, whole genome shotgun sequence	29201..30400	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTW010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTW010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTW010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.guided.64, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTW010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.denovo.51, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTW010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTW010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 616 isolate 616 SAMEA114440188-rid19671603.denovo.40, whole genome shotgun sequence	11245..11618																																																				
GCA_032626015.1_PDT001924128.1_genomic.fna	Salmonella_enterica	0.5192	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTX010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTX010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTX010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTX010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTX010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTX010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTX010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.denovo.33, whole genome shotgun sequence	33189..34064	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTX010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTX010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.denovo.33, whole genome shotgun sequence	38705..39361	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTX010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTX010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTX010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTX010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.denovo.33, whole genome shotgun sequence	29179..30378	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTX010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTX010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTX010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTX010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTX010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTX010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 535 isolate 535 SAMEA114440184-rid19670533.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032626035.1_PDT001924127.1_genomic.fna	Salmonella_enterica	0.5192	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTY010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTY010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTY010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTY010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTY010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTY010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTY010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.denovo.32, whole genome shotgun sequence	33229..34104	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTY010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTY010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.denovo.32, whole genome shotgun sequence	38745..39401	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTY010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTY010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTY010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTY010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.denovo.32, whole genome shotgun sequence	29219..30418	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTY010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTY010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTY010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTY010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTY010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTY010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 461 isolate 461 SAMEA114440182-rid19671593.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032626055.1_PDT001924125.1_genomic.fna	Salmonella_enterica	0.5192	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUA010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUA010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUA010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUA010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUA010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUA010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUA010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.denovo.34, whole genome shotgun sequence	33235..34110	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUA010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.guided.59, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUA010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.denovo.34, whole genome shotgun sequence	38751..39407	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUA010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUA010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUA010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUA010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.denovo.34, whole genome shotgun sequence	29225..30424	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUA010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUA010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUA010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.guided.64, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUA010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.denovo.51, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUA010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUA010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 286 isolate 286 SAMEA114440177-rid19670513.denovo.40, whole genome shotgun sequence	11245..11618																																																				
GCA_032626075.1_PDT001924126.1_genomic.fna	Salmonella_enterica	0.5193	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDTZ010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTZ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTZ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDTZ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.guided.38, whole genome shotgun sequence	7331..7765	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDTZ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDTZ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDTZ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.denovo.33, whole genome shotgun sequence	33081..33956	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDTZ010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDTZ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.denovo.33, whole genome shotgun sequence	38597..39253	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDTZ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDTZ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDTZ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDTZ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.denovo.33, whole genome shotgun sequence	29071..30270	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDTZ010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDTZ010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDTZ010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.guided.64, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDTZ010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDTZ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDTZ010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 441 isolate 441 SAMEA114440181-rid19670523.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032626095.1_PDT001924124.1_genomic.fna	Salmonella_enterica	0.5192	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUB010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUB010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUB010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUB010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUB010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUB010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUB010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.denovo.32, whole genome shotgun sequence	33224..34099	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUB010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUB010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.denovo.32, whole genome shotgun sequence	38740..39396	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUB010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUB010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUB010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUB010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.denovo.32, whole genome shotgun sequence	29214..30413	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUB010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUB010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUB010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUB010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.denovo.50, whole genome shotgun sequence	3491..4050	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUB010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUB010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 250 isolate 250 SAMEA114440175-rid19671583.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032626115.1_PDT001924123.1_genomic.fna	Salmonella_enterica	0.5193	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUC010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUC010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.denovo.52, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUC010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.denovo.52, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.57	412/438	DAQDUC010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.guided.41, whole genome shotgun sequence	3..414	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUC010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.guided.53, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUC010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.guided.53, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUC010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.denovo.32, whole genome shotgun sequence	33234..34109	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUC010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUC010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.denovo.32, whole genome shotgun sequence	38750..39406	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUC010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.guided.63, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUC010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.denovo.52, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUC010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.guided.53, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUC010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.denovo.32, whole genome shotgun sequence	29224..30423	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUC010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUC010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.denovo.60, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUC010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.guided.61, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUC010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.denovo.48, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUC010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUC010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 201 isolate 201 SAMEA114440174-rid19670503.denovo.37, whole genome shotgun sequence	11245..11618																																																				
GCA_032626135.1_PDT001924122.1_genomic.fna	Salmonella_enterica	0.5192	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaTEM-1B,blaCTX-M-15,blaTEM-1B,qnrS1,qnrS1,sul2,sul2	1	gyrA_p.S83Y	1	IncY	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUD010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1CTRMumbai isolate 1CTRMumbai SAMEA114440173-rid19671573.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUD010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1CTRMumbai isolate 1CTRMumbai SAMEA114440173-rid19671573.denovo.43, whole genome shotgun sequence	22269..23105	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUD010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1CTRMumbai isolate 1CTRMumbai SAMEA114440173-rid19671573.denovo.43, whole genome shotgun sequence	23105..23908	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUD010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1CTRMumbai isolate 1CTRMumbai SAMEA114440173-rid19671573.guided.31, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUD010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1CTRMumbai isolate 1CTRMumbai SAMEA114440173-rid19671573.guided.59, whole genome shotgun sequence	2142..2978	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUD010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1CTRMumbai isolate 1CTRMumbai SAMEA114440173-rid19671573.guided.59, whole genome shotgun sequence	1339..2142	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUD010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1CTRMumbai isolate 1CTRMumbai SAMEA114440173-rid19671573.denovo.43, whole genome shotgun sequence	16991..17866	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	DAQDUD010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1CTRMumbai isolate 1CTRMumbai SAMEA114440173-rid19671573.denovo.43, whole genome shotgun sequence	20688..21548	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-15	100	876/876	DAQDUD010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1CTRMumbai isolate 1CTRMumbai SAMEA114440173-rid19671573.guided.54, whole genome shotgun sequence	3832..4707	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	DAQDUD010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1CTRMumbai isolate 1CTRMumbai SAMEA114440173-rid19671573.guided.54, whole genome shotgun sequence	150..1010	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrS1	100	657/657	DAQDUD010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1CTRMumbai isolate 1CTRMumbai SAMEA114440173-rid19671573.denovo.43, whole genome shotgun sequence	11694..12350	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUD010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1CTRMumbai isolate 1CTRMumbai SAMEA114440173-rid19671573.guided.52, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUD010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1CTRMumbai isolate 1CTRMumbai SAMEA114440173-rid19671573.denovo.43, whole genome shotgun sequence	23969..24784	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUD010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1CTRMumbai isolate 1CTRMumbai SAMEA114440173-rid19671573.guided.59, whole genome shotgun sequence	463..1278	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																						gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncY	98.82	765 / 765	DAQDUD010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1CTRMumbai isolate 1CTRMumbai SAMEA114440173-rid19671573.denovo.40, whole genome shotgun sequence	3031..3795																																																																	
GCA_032626155.1_PDT001924121.1_genomic.fna	Salmonella_enterica	0.5192	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUE010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUE010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUE010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUE010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.guided.49, whole genome shotgun sequence	9853..10287	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUE010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUE010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUE010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.denovo.33, whole genome shotgun sequence	33203..34078	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUE010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.guided.59, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUE010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.denovo.33, whole genome shotgun sequence	38719..39375	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUE010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUE010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUE010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUE010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.denovo.33, whole genome shotgun sequence	29193..30392	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUE010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUE010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUE010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.guided.64, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUE010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.denovo.51, whole genome shotgun sequence	3491..4050	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUE010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUE010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 127 isolate 127 SAMEA114440170-rid19670493.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032626175.1_PDT001924120.1_genomic.fna	Salmonella_enterica	0.5197	197.769 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUF010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-995 isolate 11-995 SAMEA114440169-rid19670483.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQDUF010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-995 isolate 11-995 SAMEA114440169-rid19670483.guided.28, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032626195.1_PDT001924119.1_genomic.fna	Salmonella_enterica	0.5196	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUG010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-977 isolate 11-977 SAMEA114440168-rid19671563.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQDUG010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-977 isolate 11-977 SAMEA114440168-rid19671563.guided.29, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032626215.1_PDT001924118.1_genomic.fna	Salmonella_enterica	0.5197	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUH010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-889 isolate 11-889 SAMEA114440165-rid19670473.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQDUH010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-889 isolate 11-889 SAMEA114440165-rid19670473.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032626235.1_PDT001924116.1_genomic.fna	Salmonella_enterica	0.5196	159.508 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUJ010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-880 isolate 11-880 SAMEA114440163-rid19670463.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQDUJ010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-880 isolate 11-880 SAMEA114440163-rid19670463.guided.30, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032626255.1_PDT001924115.1_genomic.fna	Salmonella_enterica	0.5192	149.138 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUK010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUK010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.denovo.56, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUK010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.denovo.56, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUK010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.guided.44, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUK010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.guided.57, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUK010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.guided.57, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUK010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.denovo.34, whole genome shotgun sequence	33213..34088	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUK010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.guided.60, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUK010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.denovo.34, whole genome shotgun sequence	38729..39385	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUK010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.guided.51, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUK010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.denovo.56, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUK010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.guided.57, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUK010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.denovo.34, whole genome shotgun sequence	29203..30402	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUK010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.guided.61, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUK010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.denovo.64, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUK010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.guided.65, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUK010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.denovo.52, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUK010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUK010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 104 isolate 104 SAMEA114440157-rid19670453.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032626275.1_PDT001924117.1_genomic.fna	Salmonella_enterica	0.5199	206.116 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUI010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-887 isolate 11-887 SAMEA114440164-rid19671553.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQDUI010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-887 isolate 11-887 SAMEA114440164-rid19671553.guided.27, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032626295.1_PDT001924114.1_genomic.fna	Salmonella_enterica	0.5192	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUL010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUL010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUL010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUL010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUL010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.guided.67, whole genome shotgun sequence	821..1657	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUL010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.guided.67, whole genome shotgun sequence	18..821	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUL010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.denovo.32, whole genome shotgun sequence	33209..34084	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUL010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUL010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.denovo.32, whole genome shotgun sequence	38725..39381	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUL010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUL010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUL010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.guided.58, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUL010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.denovo.32, whole genome shotgun sequence	29199..30398	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUL010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.guided.57, whole genome shotgun sequence	762..1961	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUL010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUL010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUL010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUL010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUL010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270258 isolate W270258 SAMEA114327872-rid19671543.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032626315.1_PDT001924113.1_genomic.fna	Salmonella_enterica	0.5192	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUM010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUM010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.guided.33, whole genome shotgun sequence	13793..14227	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUM010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUM010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUM010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.denovo.32, whole genome shotgun sequence	33207..34082	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUM010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUM010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.denovo.32, whole genome shotgun sequence	38723..39379	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUM010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUM010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUM010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.denovo.32, whole genome shotgun sequence	29197..30396	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUM010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUM010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUM010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUM010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUM010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUM010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W270098 isolate W270098 SAMEA114327873-rid19670443.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032626335.1_PDT001924110.1_genomic.fna	Salmonella_enterica	0.5192	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUP010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUP010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUP010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUP010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUP010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUP010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUP010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.denovo.32, whole genome shotgun sequence	33231..34106	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUP010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUP010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.denovo.32, whole genome shotgun sequence	38747..39403	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUP010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUP010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUP010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUP010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.denovo.32, whole genome shotgun sequence	29221..30420	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUP010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUP010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUP010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUP010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUP010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUP010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38719 isolate A38719 SAMEA114327878-rid19670433.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032626355.1_PDT001924112.1_genomic.fna	Salmonella_enterica	0.5194	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUN010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUN010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUN010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUN010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.guided.44, whole genome shotgun sequence	4330..4764	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUN010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUN010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUN010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.denovo.33, whole genome shotgun sequence	33233..34108	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUN010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUN010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.denovo.33, whole genome shotgun sequence	38749..39405	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUN010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.guided.50, whole genome shotgun sequence	735..1391	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUN010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUN010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUN010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.denovo.33, whole genome shotgun sequence	29223..30422	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUN010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.guided.60, whole genome shotgun sequence	634..1833	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUN010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUN010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.guided.64, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUN010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.denovo.51, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUN010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUN010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A92831 isolate A92831 SAMEA114327874-rid19671533.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032626375.1_PDT001924111.1_genomic.fna	Salmonella_enterica	0.519	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUO010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUO010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUO010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUO010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUO010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUO010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUO010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.denovo.32, whole genome shotgun sequence	33188..34063	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUO010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUO010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.denovo.32, whole genome shotgun sequence	38704..39360	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUO010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUO010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUO010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUO010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.denovo.32, whole genome shotgun sequence	29178..30377	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUO010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUO010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUO010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUO010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUO010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUO010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1121683 isolate R1121683 SAMEA114327875-rid19669943.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032626395.1_PDT001924109.1_genomic.fna	Salmonella_enterica	0.5191	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUQ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUQ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUQ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUQ010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUQ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUQ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUQ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.denovo.33, whole genome shotgun sequence	33221..34096	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUQ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.guided.59, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUQ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.denovo.33, whole genome shotgun sequence	38737..39393	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUQ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUQ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUQ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUQ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.denovo.33, whole genome shotgun sequence	29211..30410	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUQ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUQ010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUQ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUQ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUQ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUQ010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A38953 isolate A38953 SAMEA114327879-rid19670423.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032626415.1_PDT001924108.1_genomic.fna	Salmonella_enterica	0.519	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUR010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUR010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUR010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUR010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUR010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUR010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUR010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.denovo.34, whole genome shotgun sequence	33235..34110	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUR010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUR010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.denovo.34, whole genome shotgun sequence	38751..39407	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUR010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUR010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUR010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUR010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.denovo.34, whole genome shotgun sequence	29225..30424	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUR010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUR010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUR010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.guided.64, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUR010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.denovo.51, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUR010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUR010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain V85818 isolate V85818 SAMEA114327880-rid19670413.denovo.41, whole genome shotgun sequence	11245..11618																																																				
GCA_032626435.1_PDT001924105.1_genomic.fna	Salmonella_enterica	0.519	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUU010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUU010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUU010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUU010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.guided.34, whole genome shotgun sequence	13793..14227	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUU010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.guided.68, whole genome shotgun sequence	821..1657	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUU010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.guided.68, whole genome shotgun sequence	18..821	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUU010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.denovo.33, whole genome shotgun sequence	33200..34075	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUU010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.guided.55, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	99.89	876/876	DAQDUU010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.guided.65, whole genome shotgun sequence	1750..2624	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUU010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.denovo.33, whole genome shotgun sequence	38716..39372	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUU010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUU010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUU010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.guided.58, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUU010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.denovo.33, whole genome shotgun sequence	29190..30389	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUU010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUU010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUU010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUU010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUU010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUU010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A53797 isolate A53797 SAMEA114327886-rid19670383.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032626455.1_PDT001924107.1_genomic.fna	Salmonella_enterica	0.5192	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUS010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUS010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUS010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUS010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.guided.44, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUS010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUS010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUS010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.denovo.33, whole genome shotgun sequence	33231..34106	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUS010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUS010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.denovo.33, whole genome shotgun sequence	38747..39403	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUS010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUS010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUS010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUS010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.denovo.33, whole genome shotgun sequence	29221..30420	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUS010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUS010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUS010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUS010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUS010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUS010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M425601 isolate M425601 SAMEA114327882-rid19670403.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032626475.1_PDT001924106.1_genomic.fna	Salmonella_enterica	0.5191	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUT010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUT010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUT010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUT010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUT010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.guided.58, whole genome shotgun sequence	3355..4191	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUT010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.guided.58, whole genome shotgun sequence	2552..3355	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUT010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.denovo.33, whole genome shotgun sequence	33217..34092	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUT010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUT010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.denovo.33, whole genome shotgun sequence	38733..39389	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUT010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUT010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUT010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.guided.58, whole genome shotgun sequence	1676..2491	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUT010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.denovo.33, whole genome shotgun sequence	29207..30406	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUT010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUT010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUT010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.guided.63, whole genome shotgun sequence	2583..3056	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUT010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUT010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUT010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W288040 isolate W288040 SAMEA114327883-rid19670393.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032626495.1_PDT001924102.1_genomic.fna	Salmonella_enterica	0.5192	150.056 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUX010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.denovo.09, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUX010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUX010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUX010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.guided.42, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUX010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUX010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUX010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.denovo.33, whole genome shotgun sequence	33201..34076	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUX010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUX010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.denovo.33, whole genome shotgun sequence	38717..39373	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUX010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUX010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUX010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUX010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.denovo.33, whole genome shotgun sequence	29191..30390	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUX010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUX010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUX010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUX010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUX010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUX010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W301326 isolate W301326 SAMEA114327890-rid19671523.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032626515.1_PDT001924103.1_genomic.fna	Salmonella_enterica	0.5191	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUW010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUW010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUW010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUW010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUW010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUW010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUW010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.denovo.33, whole genome shotgun sequence	33191..34066	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUW010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUW010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.denovo.33, whole genome shotgun sequence	38707..39363	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUW010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.guided.50, whole genome shotgun sequence	647..1303	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUW010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUW010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUW010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.denovo.33, whole genome shotgun sequence	29181..30380	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUW010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUW010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUW010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUW010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.denovo.48, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUW010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUW010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1139754 isolate R1139754 SAMEA114327889-rid19670363.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032626535.1_PDT001924104.1_genomic.fna	Salmonella_enterica	0.5192	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUV010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUV010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUV010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUV010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUV010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUV010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUV010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.denovo.33, whole genome shotgun sequence	33193..34068	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUV010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUV010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.denovo.33, whole genome shotgun sequence	38709..39365	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUV010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUV010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUV010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUV010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.denovo.33, whole genome shotgun sequence	29183..30382	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUV010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUV010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUV010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUV010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUV010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUV010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A55420 isolate A55420 SAMEA114327888-rid19670373.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032626555.1_PDT001924101.1_genomic.fna	Salmonella_enterica	0.5193	150.056 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUY010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUY010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUY010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUY010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUY010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUY010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUY010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.denovo.32, whole genome shotgun sequence	33198..34073	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUY010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUY010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.denovo.32, whole genome shotgun sequence	38714..39370	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUY010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUY010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUY010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUY010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.denovo.32, whole genome shotgun sequence	29188..30387	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUY010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUY010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUY010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUY010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUY010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUY010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69023 isolate A69023 SAMEA114327891-rid19669933.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032626575.1_PDT001924100.1_genomic.fna	Salmonella_enterica	0.5194	150.056 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDUZ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUZ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUZ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDUZ010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.guided.45, whole genome shotgun sequence	14752..15186	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDUZ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDUZ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDUZ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.denovo.33, whole genome shotgun sequence	33209..34084	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDUZ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDUZ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.denovo.33, whole genome shotgun sequence	38725..39381	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDUZ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.guided.51, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDUZ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDUZ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDUZ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.denovo.33, whole genome shotgun sequence	29199..30398	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDUZ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDUZ010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDUZ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDUZ010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDUZ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDUZ010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain M444796 isolate M444796 SAMEA114327892-rid19670353.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032626595.1_PDT001924099.1_genomic.fna	Salmonella_enterica	0.519	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVA010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVA010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVA010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVA010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVA010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVA010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVA010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.denovo.33, whole genome shotgun sequence	33219..34094	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVA010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVA010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.denovo.33, whole genome shotgun sequence	38735..39391	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVA010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVA010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVA010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVA010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.denovo.33, whole genome shotgun sequence	29209..30408	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVA010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVA010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVA010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVA010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVA010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVA010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69432 isolate A69432 SAMEA114327893-rid19669923.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032626615.1_PDT001924098.1_genomic.fna	Salmonella_enterica	0.5193	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVB010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.denovo.09, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVB010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVB010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVB010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.guided.43, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVB010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVB010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVB010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.denovo.31, whole genome shotgun sequence	33222..34097	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVB010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVB010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.denovo.31, whole genome shotgun sequence	38738..39394	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVB010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVB010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVB010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVB010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.denovo.31, whole genome shotgun sequence	29212..30411	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVB010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVB010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVB010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVB010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVB010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.denovo.17, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVB010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A75253 isolate A75253 SAMEA114327894-rid19670343.denovo.36, whole genome shotgun sequence	11245..11618																																																				
GCA_032626635.1_PDT001924096.1_genomic.fna	Salmonella_enterica	0.5196	153.025 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVD010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVD010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVD010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVD010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.guided.42, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVD010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVD010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVD010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.denovo.32, whole genome shotgun sequence	33211..34086	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVD010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVD010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.denovo.32, whole genome shotgun sequence	38727..39383	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVD010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVD010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVD010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVD010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.denovo.32, whole genome shotgun sequence	29201..30400	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVD010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVD010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVD010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.guided.64, whole genome shotgun sequence	2614..3087	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVD010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVD010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVD010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W308246 isolate W308246 SAMEA114327897-rid19670323.denovo.37, whole genome shotgun sequence	11245..11618																																																				
GCA_032626655.1_PDT001924097.1_genomic.fna	Salmonella_enterica	0.5195	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVC010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVC010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.denovo.52, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVC010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.denovo.52, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVC010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.guided.41, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVC010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVC010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVC010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.denovo.30, whole genome shotgun sequence	33174..34049	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVC010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVC010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.denovo.30, whole genome shotgun sequence	38690..39346	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVC010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVC010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.denovo.52, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVC010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVC010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.denovo.30, whole genome shotgun sequence	29164..30363	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVC010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.guided.62, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVC010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.denovo.59, whole genome shotgun sequence	183..656	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVC010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.guided.60, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVC010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.denovo.47, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVC010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.denovo.17, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVC010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A73610 isolate A73610 SAMEA114327896-rid19670333.denovo.36, whole genome shotgun sequence	11245..11618																																																				
GCA_032626675.1_PDT001924095.1_genomic.fna	Salmonella_enterica	0.5183	150.056 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	4	IncFIB(K),IncFIB(pHCM2),IncX1,rep21	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVE010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.denovo.009, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVE010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.denovo.055, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVE010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.denovo.055, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVE010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.guided.044, whole genome shotgun sequence	13846..14280	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVE010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.guided.056, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVE010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.guided.056, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQDVE010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.guided.057, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQDVE010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.guided.057, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVE010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.denovo.032, whole genome shotgun sequence	33196..34071	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVE010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.guided.059, whole genome shotgun sequence	1572..2447	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVE010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.denovo.032, whole genome shotgun sequence	38712..39368	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVE010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.guided.070, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVE010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.denovo.055, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVE010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.guided.056, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVE010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.guided.057, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVE010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.denovo.032, whole genome shotgun sequence	29186..30385	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVE010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.guided.060, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVE010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.denovo.063, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVE010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.guided.064, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																			gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVE010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.denovo.048, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVE010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.denovo.015, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVE010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.denovo.038, whole genome shotgun sequence	11245..11618		Rep1	rep21	98.41	1005 / 1005	DAQDVE010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A79460 isolate A79460 SAMEA114327898-rid19670313.denovo.068, whole genome shotgun sequence	65..1069	rep(pSK108)																																												
GCA_032626685.1_PDT001924093.1_genomic.fna	Salmonella_enterica	0.5192	150.056 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVF010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVF010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVF010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVF010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.guided.41, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVF010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVF010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVF010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.denovo.32, whole genome shotgun sequence	33213..34088	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVF010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.guided.60, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVF010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.denovo.32, whole genome shotgun sequence	38729..39385	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVF010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVF010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVF010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVF010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.denovo.32, whole genome shotgun sequence	29203..30402	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVF010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVF010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVF010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVF010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVF010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVF010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A81056 isolate A81056 SAMEA114327901-rid19670293.denovo.37, whole genome shotgun sequence	11245..11618																																																				
GCA_032626725.1_PDT001924094.1_genomic.fna	Salmonella_enterica	0.5193	150.056 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVG010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVG010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVG010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVG010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVG010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.guided.63, whole genome shotgun sequence	1772..2608	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVG010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.guided.63, whole genome shotgun sequence	969..1772	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVG010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.denovo.32, whole genome shotgun sequence	33205..34080	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVG010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.guided.59, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVG010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.denovo.32, whole genome shotgun sequence	38721..39377	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVG010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVG010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVG010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.guided.63, whole genome shotgun sequence	93..908	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVG010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.denovo.32, whole genome shotgun sequence	29195..30394	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVG010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVG010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.denovo.60, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVG010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.guided.61, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVG010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVG010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVG010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain W309418 isolate W309418 SAMEA114327900-rid19670303.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032626745.1_PDT001924092.1_genomic.fna	Salmonella_enterica	0.519	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVH010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVH010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVH010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVH010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVH010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVH010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVH010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.denovo.33, whole genome shotgun sequence	33203..34078	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVH010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVH010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.denovo.33, whole genome shotgun sequence	38719..39375	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVH010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.guided.49, whole genome shotgun sequence	162..818	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVH010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVH010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVH010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.denovo.33, whole genome shotgun sequence	29193..30392	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVH010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVH010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVH010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.guided.64, whole genome shotgun sequence	2583..3056	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVH010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVH010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVH010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain D31719 isolate D31719 SAMEA114327903-rid19671513.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032626765.1_PDT001924091.1_genomic.fna	Salmonella_enterica	0.5192	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVI010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVI010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.denovo.47, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVI010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.denovo.47, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVI010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.guided.41, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVI010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.guided.52, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVI010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.guided.52, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVI010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.denovo.31, whole genome shotgun sequence	33152..34027	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVI010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.guided.55, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVI010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.denovo.31, whole genome shotgun sequence	38668..39324	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVI010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.guided.61, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVI010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.denovo.47, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVI010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.guided.52, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVI010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.denovo.31, whole genome shotgun sequence	29142..30341	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVI010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVI010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.denovo.47, whole genome shotgun sequence	7672..8145	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVI010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.guided.64, whole genome shotgun sequence	1345..1818	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVI010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.denovo.48, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVI010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVI010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A86813 isolate A86813 SAMEA114327905-rid19669913.denovo.37, whole genome shotgun sequence	11245..11618																																																				
GCA_032626785.1_PDT001924089.1_genomic.fna	Salmonella_enterica	0.5192	150.056 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVK010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVK010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.guided.40, whole genome shotgun sequence	2340..2774	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVK010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.guided.67, whole genome shotgun sequence	820..1656	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVK010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.guided.67, whole genome shotgun sequence	17..820	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVK010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.denovo.33, whole genome shotgun sequence	33212..34087	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVK010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.guided.62, whole genome shotgun sequence	678..1553	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVK010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.denovo.33, whole genome shotgun sequence	38728..39384	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVK010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVK010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.guided.76, whole genome shotgun sequence	68..883	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVK010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.denovo.33, whole genome shotgun sequence	29202..30401	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVK010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.guided.64, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVK010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.denovo.59, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVK010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.guided.61, whole genome shotgun sequence	2583..3056	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVK010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVK010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVK010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain C195179 isolate C195179 SAMEA114327907-rid19669903.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032626805.1_PDT001924090.1_genomic.fna	Salmonella_enterica	0.5194	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVJ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVJ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.denovo.52, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVJ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.denovo.52, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVJ010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.guided.42, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVJ010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.guided.56, whole genome shotgun sequence	3420..4256	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVJ010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.guided.56, whole genome shotgun sequence	2617..3420	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVJ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.denovo.31, whole genome shotgun sequence	33177..34052	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVJ010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.guided.54, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVJ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.denovo.31, whole genome shotgun sequence	38693..39349	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVJ010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVJ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.denovo.52, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVJ010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.guided.56, whole genome shotgun sequence	1741..2556	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVJ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.denovo.31, whole genome shotgun sequence	29167..30366	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVJ010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.guided.55, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVJ010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.denovo.59, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVJ010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.guided.60, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVJ010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.denovo.46, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVJ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVJ010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162199 isolate R1162199 SAMEA114327906-rid19670283.denovo.37, whole genome shotgun sequence	11245..11618																																																				
GCA_032626825.1_PDT001924088.1_genomic.fna	Salmonella_enterica	0.5194	150.056 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVL010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVL010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVL010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVL010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.guided.46, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVL010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVL010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.denovo.32, whole genome shotgun sequence	33184..34059	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVL010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.guided.61, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.denovo.32, whole genome shotgun sequence	38700..39356	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVL010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVL010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVL010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.denovo.32, whole genome shotgun sequence	29174..30373	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVL010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVL010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVL010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.guided.67, whole genome shotgun sequence	1226..1699	Trimethoprim	KF921535	dfrA14	99.79	474/474	DAQDVL010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.guided.68, whole genome shotgun sequence	1226..1699	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVL010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVL010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVL010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain K341351 isolate K341351 SAMEA114327908-rid19670273.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032626845.1_PDT001924086.1_genomic.fna	Salmonella_enterica	0.5193	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVN010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVN010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVN010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVN010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.guided.39, whole genome shotgun sequence	9401..9835	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVN010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVN010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVN010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.denovo.32, whole genome shotgun sequence	33223..34098	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVN010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVN010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.denovo.32, whole genome shotgun sequence	38739..39395	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVN010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVN010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVN010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVN010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.denovo.32, whole genome shotgun sequence	29213..30412	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVN010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVN010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVN010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.guided.63, whole genome shotgun sequence	2607..3080	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVN010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.denovo.49, whole genome shotgun sequence	3489..4048	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVN010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVN010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A100556 isolate A100556 SAMEA114327911-rid19670263.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032626865.1_PDT001924085.1_genomic.fna	Salmonella_enterica	0.5196	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVO010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVO010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVO010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVO010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.guided.40, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVO010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVO010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVO010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.denovo.31, whole genome shotgun sequence	33202..34077	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVO010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVO010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.denovo.31, whole genome shotgun sequence	38718..39374	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVO010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.guided.51, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVO010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVO010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVO010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.denovo.31, whole genome shotgun sequence	29192..30391	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVO010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVO010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.denovo.60, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVO010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.guided.61, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVO010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.denovo.46, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVO010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVO010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1163632 isolate R1163632 SAMEA114327912-rid19670253.denovo.36, whole genome shotgun sequence	11245..11618																																																				
GCA_032626885.1_PDT001924087.1_genomic.fna	Salmonella_enterica	0.519	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVM010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVM010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVM010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVM010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVM010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.denovo.32, whole genome shotgun sequence	33211..34086	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVM010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.guided.59, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVM010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.denovo.32, whole genome shotgun sequence	38727..39383	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVM010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVM010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVM010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.denovo.32, whole genome shotgun sequence	29201..30400	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVM010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVM010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.denovo.60, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVM010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.guided.61, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVM010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.denovo.48, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVM010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVM010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1162970 isolate R1162970 SAMEA114327910-rid19671503.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032626905.1_PDT001924084.1_genomic.fna	Salmonella_enterica	0.5191	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVP010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVP010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVP010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVP010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVP010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVP010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVP010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.denovo.31, whole genome shotgun sequence	33183..34058	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVP010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVP010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.denovo.31, whole genome shotgun sequence	38699..39355	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVP010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.guided.49, whole genome shotgun sequence	706..1362	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVP010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVP010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVP010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.denovo.31, whole genome shotgun sequence	29173..30372	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVP010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVP010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.denovo.60, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVP010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.guided.64, whole genome shotgun sequence	1795..2268	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVP010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVP010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVP010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120089 isolate B120089 SAMEA114327913-rid19670243.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032626925.1_PDT001924083.1_genomic.fna	Salmonella_enterica	0.5191	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVQ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVQ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVQ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVQ010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVQ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVQ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVQ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.denovo.31, whole genome shotgun sequence	33225..34100	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVQ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVQ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.denovo.31, whole genome shotgun sequence	38741..39397	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVQ010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVQ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVQ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVQ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.denovo.31, whole genome shotgun sequence	29215..30414	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVQ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVQ010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.denovo.60, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVQ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.guided.61, whole genome shotgun sequence	2582..3055	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVQ010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVQ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVQ010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101347 isolate A101347 SAMEA114327914-rid19670233.denovo.37, whole genome shotgun sequence	11245..11618																																																				
GCA_032626945.1_PDT001924081.1_genomic.fna	Salmonella_enterica	0.5192	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVS010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVS010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVS010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVS010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVS010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVS010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVS010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.denovo.33, whole genome shotgun sequence	33217..34092	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVS010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVS010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.denovo.33, whole genome shotgun sequence	38733..39389	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVS010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVS010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVS010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVS010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.denovo.33, whole genome shotgun sequence	29207..30406	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVS010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVS010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVS010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVS010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVS010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVS010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A69608 isolate A69608 SAMEA114327917-rid19670223.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032626965.1_PDT001924082.1_genomic.fna	Salmonella_enterica	0.5193	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVR010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVR010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVR010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVR010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.guided.45, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVR010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVR010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVR010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.denovo.32, whole genome shotgun sequence	33231..34106	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVR010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVR010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.denovo.32, whole genome shotgun sequence	38747..39403	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVR010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVR010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVR010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVR010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.denovo.32, whole genome shotgun sequence	29221..30420	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVR010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVR010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVR010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVR010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVR010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVR010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A101892 isolate A101892 SAMEA114327915-rid19671493.denovo.37, whole genome shotgun sequence	11245..11618																																																				
GCA_032626985.1_PDT001924080.1_genomic.fna	Salmonella_enterica	0.5192	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVT010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVT010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVT010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVT010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.guided.46, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVT010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVT010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVT010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.denovo.33, whole genome shotgun sequence	33205..34080	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVT010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.guided.59, whole genome shotgun sequence	1530..2405	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVT010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.denovo.33, whole genome shotgun sequence	38721..39377	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVT010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.guided.51, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVT010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVT010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVT010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.denovo.33, whole genome shotgun sequence	29195..30394	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVT010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVT010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVT010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.guided.69, whole genome shotgun sequence	1114..1587	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVT010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.denovo.50, whole genome shotgun sequence	3487..4046	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVT010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVT010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102151 isolate A102151 SAMEA114327919-rid19670213.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032627005.1_PDT001924079.1_genomic.fna	Salmonella_enterica	0.5192	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVU010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVU010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVU010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVU010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVU010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVU010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVU010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.denovo.32, whole genome shotgun sequence	33209..34084	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVU010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVU010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.denovo.32, whole genome shotgun sequence	38725..39381	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVU010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVU010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVU010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVU010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.denovo.32, whole genome shotgun sequence	29199..30398	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVU010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVU010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVU010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVU010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVU010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVU010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A102278 isolate A102278 SAMEA114327921-rid19669893.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032627015.1_PDT001924078.1_genomic.fna	Salmonella_enterica	0.5191	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVV010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVV010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVV010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVV010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVV010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVV010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVV010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.denovo.32, whole genome shotgun sequence	33217..34092	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVV010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.guided.57, whole genome shotgun sequence	1648..2523	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVV010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.denovo.32, whole genome shotgun sequence	38733..39389	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVV010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVV010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVV010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVV010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.denovo.32, whole genome shotgun sequence	29207..30406	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVV010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVV010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVV010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVV010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVV010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVV010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 103922 isolate A103922 SAMEA114327922-rid19670203.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032627045.1_PDT001924077.1_genomic.fna	Salmonella_enterica	0.5196	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVW010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVW010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVW010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVW010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.guided.45, whole genome shotgun sequence	3705..4139	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVW010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVW010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVW010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.denovo.31, whole genome shotgun sequence	33214..34089	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVW010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVW010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.denovo.31, whole genome shotgun sequence	38730..39386	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVW010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.guided.49, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVW010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVW010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVW010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.denovo.31, whole genome shotgun sequence	29204..30403	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVW010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVW010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.denovo.60, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVW010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.guided.61, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVW010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.denovo.46, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVW010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVW010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120702 isolate B120702 SAMEA114327924-rid19670193.denovo.36, whole genome shotgun sequence	11245..11618																																																				
GCA_032627065.1_PDT001924075.1_genomic.fna	Salmonella_enterica	0.5191	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVY010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVY010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVY010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVY010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVY010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVY010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVY010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.denovo.31, whole genome shotgun sequence	33199..34074	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVY010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVY010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.denovo.31, whole genome shotgun sequence	38715..39371	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVY010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVY010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVY010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVY010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.denovo.31, whole genome shotgun sequence	29189..30388	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVY010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVY010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.denovo.60, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVY010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.guided.61, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVY010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVY010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVY010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104839 isolate A104839 SAMEA114327927-rid19670173.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032627085.1_PDT001924076.1_genomic.fna	Salmonella_enterica	0.5193	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVX010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVX010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVX010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVX010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVX010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVX010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVX010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.denovo.32, whole genome shotgun sequence	33205..34080	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVX010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.guided.58, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVX010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.denovo.32, whole genome shotgun sequence	38721..39377	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVX010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVX010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVX010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVX010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.denovo.32, whole genome shotgun sequence	29195..30394	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVX010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVX010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVX010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVX010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.denovo.51, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVX010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVX010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain B120887 isolate B120887 SAMEA114327925-rid19670183.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032627105.1_PDT001924072.1_genomic.fna	Salmonella_enterica	0.5193	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDWB010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWB010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWB010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDWB010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWB010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWB010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDWB010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.denovo.31, whole genome shotgun sequence	33210..34085	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDWB010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDWB010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.denovo.31, whole genome shotgun sequence	38726..39382	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDWB010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDWB010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDWB010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDWB010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.denovo.31, whole genome shotgun sequence	29200..30399	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDWB010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDWB010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDWB010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDWB010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDWB010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDWB010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104309 isolate A104309 SAMEA114327930-rid19671483.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032627125.1_PDT001924073.1_genomic.fna	Salmonella_enterica	0.5192	150.056 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDWA010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWA010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.denovo.52, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWA010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.denovo.52, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDWA010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWA010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.guided.58, whole genome shotgun sequence	2048..2884	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWA010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.guided.58, whole genome shotgun sequence	1245..2048	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDWA010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.denovo.32, whole genome shotgun sequence	33191..34066	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDWA010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.guided.55, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDWA010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.denovo.32, whole genome shotgun sequence	38707..39363	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDWA010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.guided.62, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDWA010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.denovo.52, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDWA010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.guided.58, whole genome shotgun sequence	369..1184	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDWA010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.denovo.32, whole genome shotgun sequence	29181..30380	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDWA010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.guided.56, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDWA010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.denovo.59, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDWA010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.guided.60, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDWA010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.denovo.46, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDWA010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.denovo.17, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDWA010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164952 isolate R1164952 SAMEA114327929-rid19670153.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032627145.1_PDT001924074.1_genomic.fna	Salmonella_enterica	0.5193	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDVZ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVZ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.denovo.51, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVZ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.denovo.51, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDVZ010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.guided.42, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDVZ010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.guided.52, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDVZ010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.guided.52, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDVZ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.denovo.31, whole genome shotgun sequence	33222..34097	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDVZ010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDVZ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.denovo.31, whole genome shotgun sequence	38738..39394	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDVZ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.guided.62, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDVZ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.denovo.51, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDVZ010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.guided.52, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDVZ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.denovo.31, whole genome shotgun sequence	29212..30411	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDVZ010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDVZ010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.denovo.59, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDVZ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.guided.60, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDVZ010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.denovo.47, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDVZ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.denovo.17, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDVZ010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104741 isolate A104741 SAMEA114327928-rid19670163.denovo.36, whole genome shotgun sequence	11245..11618																																																				
GCA_032627165.1_PDT001924069.1_genomic.fna	Salmonella_enterica	0.519	144.531 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDWE010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWE010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWE010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDWE010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWE010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.guided.56, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWE010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.guided.56, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDWE010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.denovo.33, whole genome shotgun sequence	33210..34085	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDWE010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.guided.59, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDWE010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.denovo.33, whole genome shotgun sequence	38726..39382	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDWE010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDWE010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDWE010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.guided.56, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDWE010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.denovo.33, whole genome shotgun sequence	29200..30399	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDWE010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.guided.60, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDWE010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDWE010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.guided.64, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDWE010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.denovo.51, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDWE010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.denovo.17, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDWE010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain A104510 isolate A104510 SAMEA114327936-rid19670123.denovo.41, whole genome shotgun sequence	11245..11618																																																				
GCA_032627175.1_PDT001924071.1_genomic.fna	Salmonella_enterica	0.5194	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDWC010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWC010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWC010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDWC010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.guided.47, whole genome shotgun sequence	6933..7367	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWC010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWC010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDWC010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.denovo.32, whole genome shotgun sequence	33187..34062	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDWC010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.guided.56, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDWC010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.denovo.32, whole genome shotgun sequence	38703..39359	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDWC010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDWC010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDWC010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDWC010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.denovo.32, whole genome shotgun sequence	29177..30376	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDWC010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDWC010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDWC010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.guided.63, whole genome shotgun sequence	2607..3080	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDWC010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDWC010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDWC010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1165347 isolate R1165347 SAMEA114327933-rid19670143.denovo.37, whole genome shotgun sequence	11245..11618																																																				
GCA_032627205.1_PDT001924070.1_genomic.fna	Salmonella_enterica	0.5191	149.911 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDWD010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWD010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWD010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDWD010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.guided.42, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWD010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWD010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDWD010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.denovo.33, whole genome shotgun sequence	33219..34094	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDWD010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDWD010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.denovo.33, whole genome shotgun sequence	38735..39391	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDWD010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDWD010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDWD010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDWD010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.denovo.33, whole genome shotgun sequence	29209..30408	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDWD010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDWD010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDWD010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDWD010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.denovo.47, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDWD010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDWD010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164424 isolate R1164424 SAMEA114327934-rid19670133.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032627225.1_PDT001924059.1_genomic.fna	Salmonella_enterica	0.5193	144.531 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDWG010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWG010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.denovo.56, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWG010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.denovo.56, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDWG010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.guided.44, whole genome shotgun sequence	830..1264	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWG010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.guided.60, whole genome shotgun sequence	4267..5103	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWG010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.guided.60, whole genome shotgun sequence	3464..4267	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDWG010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.denovo.34, whole genome shotgun sequence	33184..34059	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDWG010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.guided.61, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDWG010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.denovo.34, whole genome shotgun sequence	38700..39356	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDWG010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDWG010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.denovo.56, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDWG010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.guided.60, whole genome shotgun sequence	2588..3403	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDWG010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.denovo.34, whole genome shotgun sequence	29174..30373	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDWG010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.guided.59, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDWG010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.denovo.64, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDWG010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.guided.68, whole genome shotgun sequence	1803..2276	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDWG010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.denovo.52, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDWG010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.denovo.14, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDWG010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 154NSRL isolate 154NSRL SAMEA113534626-rid19670043.denovo.41, whole genome shotgun sequence	28492..28865																																																				
GCA_032627245.1_PDT001924068.1_genomic.fna	Salmonella_enterica	0.5193	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDWF010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWF010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.denovo.53, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWF010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.denovo.53, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDWF010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.guided.44, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWF010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.guided.54, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWF010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.guided.54, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDWF010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.denovo.32, whole genome shotgun sequence	33225..34100	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDWF010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.guided.57, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDWF010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.denovo.32, whole genome shotgun sequence	38741..39397	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDWF010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.guided.48, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDWF010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.denovo.53, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDWF010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.guided.54, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDWF010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.denovo.32, whole genome shotgun sequence	29215..30414	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDWF010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDWF010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDWF010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDWF010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.denovo.49, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDWF010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDWF010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain R1164957 isolate R1164957 SAMEA114327937-rid19670113.denovo.37, whole genome shotgun sequence	11245..11618																																																				
GCA_032627285.1_PDT001924056.1_genomic.fna	Salmonella_enterica	0.5192	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDWJ010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWJ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.denovo.30, whole genome shotgun sequence	53886..54722	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWJ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.denovo.30, whole genome shotgun sequence	53083..53886	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDWJ010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.guided.39, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWJ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.guided.68, whole genome shotgun sequence	821..1657	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWJ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.guided.68, whole genome shotgun sequence	18..821	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDWJ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.denovo.30, whole genome shotgun sequence	33169..34044	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDWJ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.guided.60, whole genome shotgun sequence	1523..2398	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDWJ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.denovo.30, whole genome shotgun sequence	38685..39341	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDWJ010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.guided.69, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDWJ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.denovo.30, whole genome shotgun sequence	52207..53022	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDWJ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.guided.57, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDWJ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.denovo.30, whole genome shotgun sequence	29159..30358	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDWJ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.guided.56, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDWJ010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.denovo.61, whole genome shotgun sequence	183..656	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDWJ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDWJ010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDWJ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDWJ010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-975 isolate 11-975 SAMEA113537080-rid19670023.denovo.40, whole genome shotgun sequence	11245..11618																																																				
GCA_032627305.1_PDT001924053.1_genomic.fna	Salmonella_enterica	0.5195	149.488 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDWM010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWM010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWM010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDWM010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.guided.44, whole genome shotgun sequence	13793..14227	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWM010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.guided.60, whole genome shotgun sequence	2151..2987	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWM010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.guided.60, whole genome shotgun sequence	1348..2151	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDWM010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.denovo.32, whole genome shotgun sequence	33081..33956	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDWM010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.guided.70, whole genome shotgun sequence	430..1305	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDWM010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.denovo.32, whole genome shotgun sequence	38597..39253	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDWM010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.guided.49, whole genome shotgun sequence	1029..1685	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDWM010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDWM010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.guided.60, whole genome shotgun sequence	472..1287	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDWM010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.denovo.32, whole genome shotgun sequence	29071..30270	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDWM010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.guided.57, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDWM010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.denovo.61, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDWM010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.guided.62, whole genome shotgun sequence	2583..3056	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDWM010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDWM010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDWM010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 116NSRL isolate 116NSRL SAMEA113534623-rid19669993.denovo.38, whole genome shotgun sequence	11245..11618																																																				
GCA_032627325.1_PDT001924057.1_genomic.fna	Salmonella_enterica	0.5189	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDWI010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWI010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWI010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDWI010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWI010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.guided.66, whole genome shotgun sequence	1507..2343	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWI010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.guided.66, whole genome shotgun sequence	704..1507	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDWI010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.denovo.34, whole genome shotgun sequence	33081..33956	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	99.89	876/876	DAQDWI010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.guided.64, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDWI010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.guided.65, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDWI010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.denovo.34, whole genome shotgun sequence	38597..39253	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDWI010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.guided.50, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDWI010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDWI010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.guided.69, whole genome shotgun sequence	1767..2582	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDWI010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.denovo.34, whole genome shotgun sequence	29071..30270	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDWI010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDWI010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.denovo.61, whole genome shotgun sequence	183..656	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDWI010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.guided.62, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDWI010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.denovo.51, whole genome shotgun sequence	3368..3927	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDWI010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDWI010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 120NSRL isolate 120NSRL SAMEA113534624-rid19671453.denovo.42, whole genome shotgun sequence	28492..28865																																																				
GCA_032627345.1_PDT001924058.1_genomic.fna	Salmonella_enterica	0.5193	149.139 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDWH010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWH010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.denovo.54, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWH010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.denovo.54, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDWH010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.guided.45, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWH010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.guided.55, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWH010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.guided.55, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDWH010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.denovo.34, whole genome shotgun sequence	33150..34025	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDWH010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.guided.60, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDWH010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.denovo.34, whole genome shotgun sequence	38666..39322	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDWH010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.guided.69, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDWH010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.denovo.54, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDWH010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.guided.55, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDWH010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.denovo.34, whole genome shotgun sequence	29140..30339	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDWH010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.guided.58, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDWH010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.denovo.62, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDWH010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.guided.63, whole genome shotgun sequence	2624..3097	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDWH010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDWH010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.denovo.15, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDWH010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 153NSRL isolate 153NSRL SAMEA113534625-rid19670033.denovo.39, whole genome shotgun sequence	11245..11618																																																				
GCA_032627365.1_PDT001924055.1_genomic.fna	Salmonella_enterica	0.5196	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDWK010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWK010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.denovo.55, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWK010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.denovo.55, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDWK010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.guided.48, whole genome shotgun sequence	10813..11247	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWK010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.guided.68, whole genome shotgun sequence	890..1726	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWK010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.guided.68, whole genome shotgun sequence	87..890	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDWK010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.denovo.35, whole genome shotgun sequence	25074..25949	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDWK010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.guided.69, whole genome shotgun sequence	571..1446	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDWK010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.denovo.35, whole genome shotgun sequence	30590..31246	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDWK010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.guided.57, whole genome shotgun sequence	1029..1685	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDWK010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.denovo.55, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDWK010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.guided.61, whole genome shotgun sequence	3039..3854	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDWK010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.denovo.35, whole genome shotgun sequence	21064..22263	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDWK010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.guided.62, whole genome shotgun sequence	468..1667	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDWK010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.denovo.63, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDWK010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.guided.80, whole genome shotgun sequence	13..486	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDWK010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.denovo.50, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDWK010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.denovo.16, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDWK010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-964 isolate 11-964 SAMEA113537079-rid19670013.denovo.37, whole genome shotgun sequence	30762..31135																																																				
GCA_032627385.1_PDT001924054.1_genomic.fna	Salmonella_enterica	0.5155	149.138 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	18	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,armA,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3')-Ia,blaCTX-M-15,blaOXA-23,blaCTX-M-15,blaOXA-23,blaOXA-66,blaADC-25,blaADC-25,blaNDM-1,msr(E),mph(E),qnrS1,qnrS1,sul2,sul1,sul2,tet(A),tet(A),tet(B),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDWL010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.denovo.008, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWL010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.denovo.059, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWL010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.denovo.059, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDWL010000127.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.044, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	armA	100	774/774	DAQDWL010000131.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.063, whole genome shotgun sequence	230..1003	Amikacin, Gentamicin, Tobramycin, Isepamicin, Netilmicin	AY220558	aph(6)-Id	100	837/837	DAQDWL010000140.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.109, whole genome shotgun sequence	814..1650	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWL010000140.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.109, whole genome shotgun sequence	11..814	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQDWL010000141.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.110, whole genome shotgun sequence	814..1650	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAQDWL010000141.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.110, whole genome shotgun sequence	12..814	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAQDWL010000141.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.110, whole genome shotgun sequence	11..814	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAQDWL010000141.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.110, whole genome shotgun sequence	11..814	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAQDWL010000141.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.110, whole genome shotgun sequence	11..814	Streptomycin	AF321550	aph(3')-Ia	100	816/816	DAQDWL010000145.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.120, whole genome shotgun sequence	106..921	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	X62115	blaCTX-M-15	100	876/876	DAQDWL010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.denovo.033, whole genome shotgun sequence	33207..34082	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaOXA-23	100	822/822	DAQDWL010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.denovo.088, whole genome shotgun sequence	489..1310	Imipenem, Meropenem	AY795964	blaCTX-M-15	100	876/876	DAQDWL010000132.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.066, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaOXA-23	100	822/822	DAQDWL010000136.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.096, whole genome shotgun sequence	75..896	Imipenem, Meropenem	AY795964	blaOXA-66	100	825/825	DAQDWL010000138.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.101, whole genome shotgun sequence	866..1690	Unknown Beta-lactam	AY750909	blaADC-25	99.83	1152/1152	DAQDWL010000142.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.112, whole genome shotgun sequence	49..1200	Unknown Beta-lactam	EF016355	blaADC-25	99.91	1152/1152	DAQDWL010000143.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.113, whole genome shotgun sequence	49..1200	Unknown Beta-lactam	EF016355	blaNDM-1	100	813/813	DAQDWL010000144.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.115, whole genome shotgun sequence	21..833	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam, Temocillin	FN396876	msr(E)	100	1476/1476	DAQDWL010000131.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.063, whole genome shotgun sequence	3302..4777	Erythromycin, Azithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S	FR751518	mph(E)	100	885/885	DAQDWL010000131.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.063, whole genome shotgun sequence	4833..5717	Erythromycin	DQ839391	qnrS1	100	657/657	DAQDWL010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.denovo.033, whole genome shotgun sequence	38723..39379	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDWL010000134.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.082, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDWL010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.denovo.059, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul1	100	840/840	DAQDWL010000146.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.123, whole genome shotgun sequence	10..849	Sulfamethoxazole	U12338	sul2	100	816/816	DAQDWL010000148.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.136, whole genome shotgun sequence	22..837	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDWL010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.denovo.033, whole genome shotgun sequence	29197..30396	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDWL010000133.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.069, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1200/1206	DAQDWL010000137.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.100, whole genome shotgun sequence	1128..2327	Doxycycline, Tetracycline, Minocycline	AP000342	dfrA14	100	474/474	DAQDWL010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.denovo.083, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDWL010000147.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.guided.132, whole genome shotgun sequence	245..718	Trimethoprim	KF921535																																																																																																																																																																																																																																	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDWL010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.denovo.053, whole genome shotgun sequence	3423..3982	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDWL010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.denovo.015, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDWL010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 11-875 isolate 11-875 SAMEA113534622-rid19670003.denovo.038, whole genome shotgun sequence	11245..11618																																																				
GCA_032627405.1_PDT001924052.1_genomic.fna	Salmonella_enterica	0.5197	143.152 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaCTX-M-15,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83F	3	IncFIB(K),IncFIB(pHCM2),IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDWN010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWN010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.denovo.57, whole genome shotgun sequence	617..1453	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWN010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.denovo.57, whole genome shotgun sequence	1453..2256	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDWN010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.guided.53, whole genome shotgun sequence	8167..8601	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWN010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.guided.58, whole genome shotgun sequence	5255..6091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWN010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.guided.58, whole genome shotgun sequence	4452..5255	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDWN010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.denovo.35, whole genome shotgun sequence	33227..34102	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	DAQDWN010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.guided.60, whole genome shotgun sequence	1750..2625	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	qnrS1	100	657/657	DAQDWN010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.denovo.35, whole genome shotgun sequence	38743..39399	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDWN010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.guided.51, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDWN010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.denovo.57, whole genome shotgun sequence	2317..3132	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDWN010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.guided.58, whole genome shotgun sequence	3576..4391	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQDWN010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.denovo.35, whole genome shotgun sequence	29217..30416	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDWN010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.guided.61, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQDWN010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.denovo.64, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDWN010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.guided.66, whole genome shotgun sequence	2514..2987	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQDWN010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.denovo.49, whole genome shotgun sequence	4946..5505	enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQDWN010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.denovo.14, whole genome shotgun sequence	23493..24367		enterobacteriales	IncX1	94.65	374 / 374	DAQDWN010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 100302 isolate 100302 SAMEA113534627-rid19671443.denovo.41, whole genome shotgun sequence	32586..32959																																																				
GCA_032627425.1_PDT001924050.1_genomic.fna	Salmonella_enterica	0.5192	144.531 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaTEM-1B,blaCTX-M-15,blaTEM-1B,qnrS1,qnrS1,sul2,sul2	1	gyrA_p.S83Y	1	IncY	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQDWO010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1-CTR isolate 1-CTR SAMEA113534620-rid19669983.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWO010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1-CTR isolate 1-CTR SAMEA113534620-rid19669983.denovo.47, whole genome shotgun sequence	22269..23105	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWO010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1-CTR isolate 1-CTR SAMEA113534620-rid19669983.denovo.47, whole genome shotgun sequence	23105..23908	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQDWO010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1-CTR isolate 1-CTR SAMEA113534620-rid19669983.guided.31, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDWO010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1-CTR isolate 1-CTR SAMEA113534620-rid19669983.guided.71, whole genome shotgun sequence	2142..2978	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDWO010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1-CTR isolate 1-CTR SAMEA113534620-rid19669983.guided.71, whole genome shotgun sequence	1339..2142	Streptomycin	AF321551	blaCTX-M-15	100	876/876	DAQDWO010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1-CTR isolate 1-CTR SAMEA113534620-rid19669983.denovo.47, whole genome shotgun sequence	16991..17866	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	DAQDWO010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1-CTR isolate 1-CTR SAMEA113534620-rid19669983.denovo.47, whole genome shotgun sequence	20688..21548	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-15	100	876/876	DAQDWO010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1-CTR isolate 1-CTR SAMEA113534620-rid19669983.guided.65, whole genome shotgun sequence	3832..4707	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	DAQDWO010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1-CTR isolate 1-CTR SAMEA113534620-rid19669983.guided.65, whole genome shotgun sequence	150..1010	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrS1	100	657/657	DAQDWO010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1-CTR isolate 1-CTR SAMEA113534620-rid19669983.denovo.47, whole genome shotgun sequence	11694..12350	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDWO010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1-CTR isolate 1-CTR SAMEA113534620-rid19669983.guided.62, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul2	100	816/816	DAQDWO010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1-CTR isolate 1-CTR SAMEA113534620-rid19669983.denovo.47, whole genome shotgun sequence	23969..24784	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDWO010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1-CTR isolate 1-CTR SAMEA113534620-rid19669983.guided.71, whole genome shotgun sequence	463..1278	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																						gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncY	98.82	765 / 765	DAQDWO010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi strain 1-CTR isolate 1-CTR SAMEA113534620-rid19669983.denovo.69, whole genome shotgun sequence	2643..3407																																																																	
GCA_032627485.1_PDT001924045.1_genomic.fna	Salmonella_enterica	0.5222	396.648 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSQB010000001.1 Salmonella enterica strain PNUSAS389469 SAMN37754380-rid19669853.denovo.01, whole genome shotgun sequence	1028191..1028628	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSQB010000030.1 Salmonella enterica strain PNUSAS389469 SAMN37754380-rid19669853.guided.20, whole genome shotgun sequence	8450..8887	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSQB010000004.1	94010..94879	99.77	870	0						
GCA_032627505.1_PDT001924047.1_genomic.fna	Salmonella_enterica	0.5218	438.302 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSPZ010000001.1 Salmonella enterica strain PNUSAS389476 SAMN37754381-rid19669523.denovo.01, whole genome shotgun sequence	874389..874826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSPZ010000023.1 Salmonella enterica strain PNUSAS389476 SAMN37754381-rid19669523.guided.15, whole genome shotgun sequence	8450..8887	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSPZ010000002.1	563792..564661	99.77	870	0						
GCA_032627545.1_PDT001924044.1_genomic.fna	Salmonella_enterica	0.5205	413.248 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSQA010000001.1 Salmonella enterica strain PNUSAS389463 SAMN37754375-rid19669843.denovo.01, whole genome shotgun sequence	643424..643861	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSQA010000022.1 Salmonella enterica strain PNUSAS389463 SAMN37754375-rid19669843.guided.16, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032627565.1_PDT001924043.1_genomic.fna	Salmonella_enterica	0.5223	761.787 KB	2	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNSQC010000001.1 Salmonella enterica strain PNUSAS389457 SAMN37754367-rid19669513.denovo.01, whole genome shotgun sequence	1371146..1371583	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNSQC010000018.1 Salmonella enterica strain PNUSAS389457 SAMN37754367-rid19669513.guided.13, whole genome shotgun sequence	11877..12314	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNSQC010000006.1	93863..94732	99.77	870	0						
GCA_032627585.1_PDT001924041.1_genomic.fna	Salmonella_enterica	0.5211	489.877 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSQE010000001.1 Salmonella enterica strain PNUSAS389480 SAMN37754370-rid19669833.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSQE010000018.1 Salmonella enterica strain PNUSAS389480 SAMN37754370-rid19669833.guided.12, whole genome shotgun sequence	23322..23759	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSQE010000012.1 Salmonella enterica strain PNUSAS389480 SAMN37754370-rid19669833.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNSQE010000014.1 Salmonella enterica strain PNUSAS389480 SAMN37754370-rid19669833.denovo.17, whole genome shotgun sequence	3384..3645																																																avrA	ABNSQE010000002.1	553642..554511	99.54	870	0						
GCA_032627605.1_PDT001924042.1_genomic.fna	Salmonella_enterica	0.5206	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncFII(pCoo)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSQD010000001.1 Salmonella enterica strain PNUSAS389461 SAMN37754395-rid19669503.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSQD010000024.1 Salmonella enterica strain PNUSAS389461 SAMN37754395-rid19669503.guided.14, whole genome shotgun sequence	5031..5468	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSQD010000013.1 Salmonella enterica strain PNUSAS389461 SAMN37754395-rid19669503.denovo.13, whole genome shotgun sequence	40507..41149	enterobacteriales	IncFII(S)	100	262 / 262	ABNSQD010000017.1 Salmonella enterica strain PNUSAS389461 SAMN37754395-rid19669503.denovo.20, whole genome shotgun sequence	3370..3631		enterobacteriales	IncFII(pCoo)	95.8	262 / 262	ABNSQD010000012.1 Salmonella enterica strain PNUSAS389461 SAMN37754395-rid19669503.denovo.12, whole genome shotgun sequence	10485..10744																																									avrA	ABNSQD010000002.1	553636..554505	99.54	870	0						
GCA_032627625.1_PDT001924040.1_genomic.fna	Salmonella_enterica	0.521	368.203 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCMY-2,blaCMY-2,floR,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSQF010000009.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.denovo.09, whole genome shotgun sequence	139323..139760	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSQF010000019.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.denovo.19, whole genome shotgun sequence	7032..7868	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSQF010000019.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.denovo.19, whole genome shotgun sequence	7868..8671	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNSQF010000029.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.denovo.37, whole genome shotgun sequence	135..950	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	aac(6')-Iaa	98.63	438/438	ABNSQF010000035.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.guided.22, whole genome shotgun sequence	8925..9362	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSQF010000039.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.guided.29, whole genome shotgun sequence	2881..3717	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSQF010000039.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.guided.29, whole genome shotgun sequence	2078..2881	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNSQF010000042.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.guided.36, whole genome shotgun sequence	129..944	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	blaCMY-2	100	1146/1146	ABNSQF010000019.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.denovo.19, whole genome shotgun sequence	37888..39033	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNSQF010000038.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.guided.28, whole genome shotgun sequence	10280..11425	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABNSQF010000019.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.denovo.19, whole genome shotgun sequence	2683..3896	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNSQF010000040.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.guided.33, whole genome shotgun sequence	355..1568	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNSQF010000041.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.guided.34, whole genome shotgun sequence	355..1568	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNSQF010000019.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.denovo.19, whole genome shotgun sequence	8732..9547	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNSQF010000039.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.guided.29, whole genome shotgun sequence	1202..2017	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNSQF010000019.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.denovo.19, whole genome shotgun sequence	4497..5771	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNSQF010000039.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.guided.29, whole genome shotgun sequence	4978..6252	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNSQF010000022.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.denovo.23, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNSQF010000016.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.denovo.16, whole genome shotgun sequence	29465..29724		enterobacteriales	IncX1	98.66	374 / 374	ABNSQF010000016.1 Salmonella enterica strain PNUSAS389462 SAMN37754383-rid19669823.denovo.16, whole genome shotgun sequence	65319..65692																																									avrA	ABNSQF010000007.1	173549..174417	99.54	870	0						
GCA_032627645.1_PDT001924037.1_genomic.fna	Salmonella_enterica	0.5204	490.115 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSQJ010000001.1 Salmonella enterica strain PNUSAS389467 SAMN37754391-rid19669483.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSQJ010000025.1 Salmonella enterica strain PNUSAS389467 SAMN37754391-rid19669483.guided.17, whole genome shotgun sequence	2302..2739	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSQJ010000012.1 Salmonella enterica strain PNUSAS389467 SAMN37754391-rid19669483.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNSQJ010000016.1 Salmonella enterica strain PNUSAS389467 SAMN37754391-rid19669483.denovo.19, whole genome shotgun sequence	3418..3679		enterobacteriales	IncX1	98.93	374 / 374	ABNSQJ010000014.1 Salmonella enterica strain PNUSAS389467 SAMN37754391-rid19669483.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNSQJ010000002.1	553693..554562	99.54	870	0						
GCA_032627685.1_PDT001924038.1_genomic.fna	Salmonella_enterica	0.5208	359.899 KB	5	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNSQH010000001.1 Salmonella enterica strain PNUSAS389483 SAMN37754387-rid19669493.denovo.01, whole genome shotgun sequence	346928..347365	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNSQH010000031.1 Salmonella enterica strain PNUSAS389483 SAMN37754387-rid19669493.guided.22, whole genome shotgun sequence	12846..13283	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSQH010000007.1	151002..151871	99.54	870	0						
GCA_032627725.1_PDT001924032.1_genomic.fna	Salmonella_enterica	0.5215	140.449 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSQL010000024.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325594 SAMN37752502-rid19669473.denovo.24, whole genome shotgun sequence	14078..14515	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSQL010000072.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325594 SAMN37752502-rid19669473.guided.35, whole genome shotgun sequence	13889..14326	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSQL010000045.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325594 SAMN37752502-rid19669473.denovo.47, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNSQL010000050.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325594 SAMN37752502-rid19669473.denovo.52, whole genome shotgun sequence	3384..3645																																																avrA	ABNSQL010000003.1	149466..150335	99.54	870	0						
GCA_032627765.1_PDT001924031.1_genomic.fna	Salmonella_enterica	0.523	60.306 KB	25	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNSQM010000022.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325595 SAMN37752503-rid19669763.denovo.022, whole genome shotgun sequence	15456..15893	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNSQM010000145.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325595 SAMN37752503-rid19669763.guided.082, whole genome shotgun sequence	5406..5843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNSQM010000116.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325595 SAMN37752503-rid19669763.denovo.119, whole genome shotgun sequence	1251..1381																																																						avrA	ABNSQM010000014.1	80040..80908	99.425	870	0						
GCA_032627785.1_PDT001924030.1_genomic.fna	Salmonella_enterica	0.5226	52.273 KB	33	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aph(6)-Id	100	837/837	ABNSQO010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.denovo.045, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSQO010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.denovo.045, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNSQO010000066.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.denovo.067, whole genome shotgun sequence	12492..12929	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSQO010000182.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.guided.063, whole genome shotgun sequence	28474..29310	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSQO010000182.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.guided.063, whole genome shotgun sequence	27671..28474	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNSQO010000183.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.guided.072, whole genome shotgun sequence	15445..15882	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNSQO010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.denovo.045, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNSQO010000187.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.guided.146, whole genome shotgun sequence	1227..2372	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.11	1214/1215	ABNSQO010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.denovo.045, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNSQO010000186.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.guided.136, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNSQO010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.denovo.045, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNSQO010000182.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.guided.063, whole genome shotgun sequence	26795..27610	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNSQO010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.denovo.045, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNSQO010000182.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.guided.063, whole genome shotgun sequence	30571..31845	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABNSQO010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.denovo.049, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNSQO010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.denovo.046, whole genome shotgun sequence	5480..5739		enterobacteriales	IncX1	98.66	374 / 374	ABNSQO010000167.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325589 SAMN37752495-rid19669463.denovo.173, whole genome shotgun sequence	232..605																																									avrA	ABNSQO010000044.1	39484..40352	99.54	870	0						
GCA_032627965.1_PDT001924021.1_genomic.fna	Salmonella_enterica	0.5228	62.105 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	11	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSQW010000014.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.denovo.014, whole genome shotgun sequence	76155..76592	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSQW010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.denovo.071, whole genome shotgun sequence	18451..19242	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSQW010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.denovo.071, whole genome shotgun sequence	18451..19242	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNSQW010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.denovo.117, whole genome shotgun sequence	1053..2078	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNSQW010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.denovo.117, whole genome shotgun sequence	48..824	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNSQW010000149.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.denovo.160, whole genome shotgun sequence	93..908	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	aac(6')-Iaa	97.49	438/438	ABNSQW010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.guided.061, whole genome shotgun sequence	15235..15672	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSQW010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.guided.090, whole genome shotgun sequence	931..1722	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSQW010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.guided.090, whole genome shotgun sequence	931..1722	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNSQW010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.guided.123, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNSQW010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.guided.123, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNSQW010000173.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.guided.159, whole genome shotgun sequence	127..942	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	blaCTX-M-65	100	876/876	ABNSQW010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.denovo.127, whole genome shotgun sequence	918..1793	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNSQW010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.guided.126, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNSQW010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.denovo.145, whole genome shotgun sequence	320..736	Fosfomycin	AB522970	fosA3	100	417/417	ABNSQW010000172.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.guided.144, whole genome shotgun sequence	361..777	Fosfomycin	AB522970	floR	98.19	1214/1215	ABNSQW010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.denovo.118, whole genome shotgun sequence	2787..4000	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNSQW010000168.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.guided.119, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNSQW010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.denovo.071, whole genome shotgun sequence	17107..17946	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSQW010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.guided.090, whole genome shotgun sequence	2227..3066	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSQW010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.denovo.071, whole genome shotgun sequence	3391..4590	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSQW010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.guided.111, whole genome shotgun sequence	1868..3067	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNSQW010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.denovo.112, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNSQW010000169.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.guided.121, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSQW010000104.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314524 SAMN37736533-rid19669703.denovo.107, whole genome shotgun sequence	5454..6013																																																						avrA	ABNSQW010000019.1	39526..40395	99.655	870	0						
GCA_032627985.1_PDT001924020.1_genomic.fna	Salmonella_enterica	0.5224	75.601 KB	23	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:-:1,5	2	aac(6')-Iaa,aac(6')-Iaa,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	-	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:-:1,5	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSQX010000012.1 Salmonella enterica subsp. enterica strain FSIS22314520 SAMN37736529-rid19669423.denovo.012, whole genome shotgun sequence	93594..94031	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNSQX010000151.1 Salmonella enterica subsp. enterica strain FSIS22314520 SAMN37736529-rid19669423.guided.069, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	dfrA14	100	474/474	ABNSQX010000118.1 Salmonella enterica subsp. enterica strain FSIS22314520 SAMN37736529-rid19669423.denovo.121, whole genome shotgun sequence	124..597	Trimethoprim	AF393510	dfrA14	100	474/474	ABNSQX010000154.1 Salmonella enterica subsp. enterica strain FSIS22314520 SAMN37736529-rid19669423.guided.126, whole genome shotgun sequence	155..628	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSQX010000112.1 Salmonella enterica subsp. enterica strain FSIS22314520 SAMN37736529-rid19669423.denovo.115, whole genome shotgun sequence	2159..2718																																																						avrA	ABNSQX010000023.1	39430..40299	99.655	870	0						
GCA_032628005.1_PDT001924019.1_genomic.fna	Salmonella_enterica	0.5228	61.46 KB	23	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSQY010000008.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314518 SAMN37736310-rid19669693.denovo.008, whole genome shotgun sequence	17786..18223	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSQY010000165.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314518 SAMN37736310-rid19669693.guided.094, whole genome shotgun sequence	5080..5517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSQY010000094.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314518 SAMN37736310-rid19669693.denovo.097, whole genome shotgun sequence	6837..7479	enterobacteriales	IncFII(S)	100	262 / 262	ABNSQY010000113.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314518 SAMN37736310-rid19669693.denovo.116, whole genome shotgun sequence	3211..3472																																																avrA	ABNSQY010000002.1	81622..82491	99.54	870	0						
GCA_032628025.1_PDT001924018.1_genomic.fna	Salmonella_enterica	0.5225	61.696 KB	23	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNSQZ010000010.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314459 SAMN37736295-rid19669413.denovo.010, whole genome shotgun sequence	13063..13500	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSQZ010000099.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314459 SAMN37736295-rid19669413.denovo.103, whole genome shotgun sequence	5973..6809	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNSQZ010000099.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314459 SAMN37736295-rid19669413.denovo.103, whole genome shotgun sequence	6809..7611	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNSQZ010000099.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314459 SAMN37736295-rid19669413.denovo.103, whole genome shotgun sequence	6809..7612	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNSQZ010000099.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314459 SAMN37736295-rid19669413.denovo.103, whole genome shotgun sequence	6809..7612	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNSQZ010000099.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314459 SAMN37736295-rid19669413.denovo.103, whole genome shotgun sequence	6809..7612	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNSQZ010000135.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314459 SAMN37736295-rid19669413.guided.094, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSQZ010000136.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314459 SAMN37736295-rid19669413.guided.102, whole genome shotgun sequence	1512..2348	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNSQZ010000136.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314459 SAMN37736295-rid19669413.guided.102, whole genome shotgun sequence	710..1512	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNSQZ010000136.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314459 SAMN37736295-rid19669413.guided.102, whole genome shotgun sequence	709..1512	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNSQZ010000136.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314459 SAMN37736295-rid19669413.guided.102, whole genome shotgun sequence	709..1512	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNSQZ010000136.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314459 SAMN37736295-rid19669413.guided.102, whole genome shotgun sequence	709..1512	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSQZ010000034.1	39546..40415	99.655	870	0						
GCA_032628045.1_PDT001924016.1_genomic.fna	Salmonella_enterica	0.5232	46.088 KB	35	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		1	ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSRC010000070.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314460 SAMN37736296-rid19669683.denovo.072, whole genome shotgun sequence	11305..11742	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNSRC010000098.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314460 SAMN37736296-rid19669683.denovo.101, whole genome shotgun sequence	12506..13408	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNSRC010000098.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314460 SAMN37736296-rid19669683.denovo.101, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNSRC010000199.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314460 SAMN37736296-rid19669683.guided.093, whole genome shotgun sequence	8192..8629	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNSRC010000201.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314460 SAMN37736296-rid19669683.guided.136, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNSRC010000203.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314460 SAMN37736296-rid19669683.guided.159, whole genome shotgun sequence	2488..3279	Spectinomycin, Streptomycin	JQ414041	sul2	100	816/816	ABNSRC010000020.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314460 SAMN37736296-rid19669683.denovo.020, whole genome shotgun sequence	5050..5865	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNSRC010000098.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314460 SAMN37736296-rid19669683.denovo.101, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul2	100	816/816	ABNSRC010000197.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314460 SAMN37736296-rid19669683.guided.042, whole genome shotgun sequence	35286..36101	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNSRC010000202.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314460 SAMN37736296-rid19669683.guided.147, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABNSRC010000020.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314460 SAMN37736296-rid19669683.denovo.020, whole genome shotgun sequence	1674..2873	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNSRC010000161.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314460 SAMN37736296-rid19669683.denovo.169, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABNSRC010000197.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314460 SAMN37736296-rid19669683.guided.042, whole genome shotgun sequence	38278..39477	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNSRC010000204.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314460 SAMN37736296-rid19669683.guided.167, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	ColpVC	98.96	193 / 193	ABNSRC010000160.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314460 SAMN37736296-rid19669683.denovo.168, whole genome shotgun sequence	805..997																																																						avrA	ABNSRC010000031.1	43805..44674	99.885	870	0						
GCA_032628065.1_PDT001924017.1_genomic.fna	Salmonella_enterica	0.5231	58.316 KB	27	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSRB010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314457 SAMN37736293-rid19669403.denovo.060, whole genome shotgun sequence	14127..14564	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSRB010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314457 SAMN37736293-rid19669403.denovo.094, whole genome shotgun sequence	11979..12770	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSRB010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314457 SAMN37736293-rid19669403.denovo.094, whole genome shotgun sequence	11979..12770	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNSRB010000161.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314457 SAMN37736293-rid19669403.guided.061, whole genome shotgun sequence	14158..14595	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSRB010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314457 SAMN37736293-rid19669403.guided.093, whole genome shotgun sequence	1210..2001	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSRB010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314457 SAMN37736293-rid19669403.guided.093, whole genome shotgun sequence	1210..2001	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNSRB010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314457 SAMN37736293-rid19669403.denovo.094, whole genome shotgun sequence	10635..11474	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSRB010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314457 SAMN37736293-rid19669403.guided.093, whole genome shotgun sequence	2506..3345	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSRB010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314457 SAMN37736293-rid19669403.denovo.120, whole genome shotgun sequence	1797..2996	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSRB010000165.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314457 SAMN37736293-rid19669403.guided.119, whole genome shotgun sequence	1823..3022	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSRB010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314457 SAMN37736293-rid19669403.denovo.136, whole genome shotgun sequence	975..1534																																																						avrA	ABNSRB010000003.1	94091..94960	99.655	870	0						
GCA_032628405.1_PDT001924000.1_genomic.fna	Salmonella_enterica	0.5206	185.493 KB	7	aroC_62,dnaN_95,hemD_54,hisD_96,purE_100,sucA_9,thrA_100	279	4:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_62	dnaN	100	100	dnaN_95	hemD	100	100	hemD_54	hisD	100	100	hisD_96	purE	100	100	purE_100	sucA	100	100	sucA_9	thrA	100	100	thrA_100	4	d	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:d:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNSRS010000001.1 Salmonella enterica subsp. enterica serovar Eppendorf strain FSIS32310275 SAMN37710865-rid19669323.denovo.01, whole genome shotgun sequence	20878..21315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNSRS010000058.1 Salmonella enterica subsp. enterica serovar Eppendorf strain FSIS32310275 SAMN37710865-rid19669323.guided.51, whole genome shotgun sequence	519..956	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSRS010000014.1	39405..40274	99.31	870	0						
GCA_032628425.1_PDT001923999.1_genomic.fna	Salmonella_enterica	0.5214	159.053 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSRT010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310270 SAMN37710856-rid19669593.denovo.01, whole genome shotgun sequence	232596..233033	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNSRT010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310270 SAMN37710856-rid19669593.guided.37, whole genome shotgun sequence	15142..15579	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSRT010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310270 SAMN37710856-rid19669593.denovo.33, whole genome shotgun sequence	32523..33082																																																						avrA	ABNSRT010000007.1	149828..150697	99.655	870	0						
GCA_032628445.1_PDT001923998.1_genomic.fna	Salmonella_enterica	0.5241	73.419 KB	21	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSRU010000055.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS22314440 SAMN37710858-rid19669313.denovo.055, whole genome shotgun sequence	12510..12947	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSRU010000117.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS22314440 SAMN37710858-rid19669313.guided.064, whole genome shotgun sequence	9243..9680	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	ABNSRU010000094.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS22314440 SAMN37710858-rid19669313.denovo.097, whole genome shotgun sequence	3345..3457																																																						avrA	ABNSRU010000011.1	95269..96138	99.425	870	0						
GCA_032628465.1_PDT001923997.1_genomic.fna	Salmonella_enterica	0.523	50.474 KB	33	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSRW010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.denovo.065, whole genome shotgun sequence	14134..14571	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSRW010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.denovo.081, whole genome shotgun sequence	18454..19245	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSRW010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.denovo.081, whole genome shotgun sequence	18454..19245	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNSRW010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.denovo.151, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNSRW010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.denovo.151, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNSRW010000197.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.guided.124, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSRW010000197.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.guided.124, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNSRW010000198.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.guided.126, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNSRW010000200.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.guided.150, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNSRW010000200.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.guided.150, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNSRW010000149.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.denovo.155, whole genome shotgun sequence	811..1686	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNSRW010000203.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.guided.167, whole genome shotgun sequence	555..1430	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNSRW010000142.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.denovo.146, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNSRW010000202.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.guided.164, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNSRW010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.denovo.081, whole genome shotgun sequence	17110..17949	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSRW010000197.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.guided.124, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSRW010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.denovo.081, whole genome shotgun sequence	3394..4593	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSRW010000201.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.guided.159, whole genome shotgun sequence	663..1862	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNSRW010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.denovo.139, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNSRW010000199.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.guided.147, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSRW010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314362 SAMN37710828-rid19669303.denovo.097, whole genome shotgun sequence	14638..15197																																																						avrA	ABNSRW010000009.1	81691..82560	99.655	870	0						
GCA_032628505.1_PDT001923995.1_genomic.fna	Salmonella_enterica	0.5234	56.609 KB	27	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	-:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	-	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:l,z13:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNSRX010000067.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314438 SAMN37710826-rid19669293.denovo.068, whole genome shotgun sequence	11353..11790	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNSRX010000159.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314438 SAMN37710826-rid19669293.guided.088, whole genome shotgun sequence	14098..14535	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSRX010000010.1	83711..84579	99.655	869	0						
GCA_032628525.1_PDT001923994.1_genomic.fna	Salmonella_enterica	0.5208	69.832 KB	24	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSRY010000010.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314450 SAMN37710818-rid19669573.denovo.010, whole genome shotgun sequence	16049..16486	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSRY010000152.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314450 SAMN37710818-rid19669573.guided.064, whole genome shotgun sequence	7908..8345	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNSRY010000069.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314450 SAMN37710818-rid19669573.denovo.071, whole genome shotgun sequence	18015..18437	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNSRY010000154.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314450 SAMN37710818-rid19669573.guided.102, whole genome shotgun sequence	4802..5224	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	ABNSRY010000119.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314450 SAMN37710818-rid19669573.denovo.124, whole genome shotgun sequence	1073..2278	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSRY010000155.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314450 SAMN37710818-rid19669573.guided.122, whole genome shotgun sequence	1094..2299	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNSRY010000116.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314450 SAMN37710818-rid19669573.denovo.120, whole genome shotgun sequence	306..447																																																						avrA	ABNSRY010000006.1	81797..82666	99.195	870	0						
GCA_032628555.1_PDT001923993.1_genomic.fna	Salmonella_enterica	0.5227	65.161 KB	21	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSRZ010000021.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS22314451 SAMN37710819-rid19669563.denovo.021, whole genome shotgun sequence	52206..52643	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSRZ010000131.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS22314451 SAMN37710819-rid19669563.guided.074, whole genome shotgun sequence	14809..15246	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNSRZ010000097.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS22314451 SAMN37710819-rid19669563.denovo.100, whole genome shotgun sequence	358..488																																																																	
GCA_032628665.1_PDT001923988.1_genomic.fna	Salmonella_enterica	0.5216	98.278 KB	14	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSSG010000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310203 SAMN37710796-rid19669263.denovo.02, whole genome shotgun sequence	145549..145986	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSSG010000069.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310203 SAMN37710796-rid19669263.denovo.74, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSSG010000069.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310203 SAMN37710796-rid19669263.denovo.74, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNSSG010000097.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310203 SAMN37710796-rid19669263.guided.59, whole genome shotgun sequence	14353..14790	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSSG010000099.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310203 SAMN37710796-rid19669263.guided.73, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSSG010000099.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310203 SAMN37710796-rid19669263.guided.73, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNSSG010000076.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310203 SAMN37710796-rid19669263.denovo.82, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNSSG010000100.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310203 SAMN37710796-rid19669263.guided.80, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNSSG010000069.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310203 SAMN37710796-rid19669263.denovo.74, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNSSG010000099.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310203 SAMN37710796-rid19669263.guided.73, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNSSG010000057.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310203 SAMN37710796-rid19669263.denovo.60, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSSG010000098.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310203 SAMN37710796-rid19669263.guided.65, whole genome shotgun sequence	2010..3215	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNSSG010000072.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310203 SAMN37710796-rid19669263.denovo.77, whole genome shotgun sequence	186..316																																																						avrA	ABNSSG010000015.1	93863..94732	99.885	870	0						
GCA_032629305.1_PDT001923954.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSTJ010000001.1 Salmonella enterica strain PNUSAS389454 SAMN37753174-rid19668563.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSTJ010000026.1 Salmonella enterica strain PNUSAS389454 SAMN37753174-rid19668563.guided.14, whole genome shotgun sequence	42413..42850	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSTJ010000016.1 Salmonella enterica strain PNUSAS389454 SAMN37753174-rid19668563.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNSTJ010000018.1 Salmonella enterica strain PNUSAS389454 SAMN37753174-rid19668563.denovo.21, whole genome shotgun sequence	3409..3670																																																avrA	ABNSTJ010000002.1	553575..554444	99.54	870	0						
GCA_032629325.1_PDT001923952.1_genomic.fna	Salmonella_enterica	0.5223	256.105 KB	6	aroC_2,dnaN_4,hemD_40,hisD_43,purE_481,sucA_2,thrA_425	2125	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_4	hemD	100	100	hemD_40	hisD	100	100	hisD_43	purE	100	100	purE_481	sucA	100	100	sucA_2	thrA	100	100	thrA_425	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNSTL010000001.1 Salmonella enterica strain PNUSAS389455 SAMN37753175-rid19668543.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNSTL010000041.1 Salmonella enterica strain PNUSAS389455 SAMN37753175-rid19668543.guided.35, whole genome shotgun sequence	3943..4380	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSTL010000012.1	100330..101199	99.77	870	0						
GCA_032629345.1_PDT001923953.1_genomic.fna	Salmonella_enterica	0.5218	273.328 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSTK010000002.1 Salmonella enterica strain PNUSAS389453 SAMN37753173-rid19668553.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNSTK010000047.1 Salmonella enterica strain PNUSAS389453 SAMN37753173-rid19668553.guided.31, whole genome shotgun sequence	5319..5756	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSTK010000017.1 Salmonella enterica strain PNUSAS389453 SAMN37753173-rid19668553.denovo.17, whole genome shotgun sequence	48419..49061	enterobacteriales	IncFII(S)	100	262 / 262	ABNSTK010000017.1 Salmonella enterica strain PNUSAS389453 SAMN37753173-rid19668553.denovo.17, whole genome shotgun sequence	64146..64407																																																avrA	ABNSTK010000004.1	175018..175886	100	869	0						
GCA_032629365.1_PDT001923951.1_genomic.fna	Salmonella_enterica	0.5209	430.356 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSTM010000001.1 Salmonella enterica strain PNUSAS389442 SAMN37753177-rid19669173.denovo.01, whole genome shotgun sequence	627103..627540	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSTM010000028.1 Salmonella enterica strain PNUSAS389442 SAMN37753177-rid19669173.guided.23, whole genome shotgun sequence	94..531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNSTM010000016.1 Salmonella enterica strain PNUSAS389442 SAMN37753177-rid19669173.denovo.16, whole genome shotgun sequence	6324..6857																																																						avrA	ABNSTM010000010.1	150695..151565	99.196	871	0						
GCA_032629385.1_PDT001923950.1_genomic.fna	Salmonella_enterica	0.5214	282.836 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul2,sul2,tet(B),tet(B)	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSTN010000001.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.denovo.01, whole genome shotgun sequence	570674..571111	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSTN010000036.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.denovo.40, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSTN010000036.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.denovo.40, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNSTN010000047.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.guided.26, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSTN010000055.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.guided.50, whole genome shotgun sequence	897..1733	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSTN010000055.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.guided.50, whole genome shotgun sequence	94..897	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNSTN010000041.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.denovo.49, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNSTN010000054.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.guided.48, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNSTN010000040.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.denovo.47, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNSTN010000051.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.guided.44, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABNSTN010000036.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.denovo.40, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNSTN010000052.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.guided.45, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	sul2	99.88	816/816	ABNSTN010000053.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.guided.46, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNSTN010000029.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.denovo.31, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSTN010000050.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.guided.34, whole genome shotgun sequence	5569..6774	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																			enterobacteriales	Col(pHAD28)	100	131 / 131	ABNSTN010000040.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.denovo.47, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNSTN010000051.1 Salmonella enterica strain PNUSAS389441 SAMN37753176-rid19668533.guided.44, whole genome shotgun sequence	2145..2275																																																avrA	ABNSTN010000002.1	540679..541548	99.885	870	0						
GCA_032629405.1_PDT001923949.1_genomic.fna	Salmonella_enterica	0.5207	381.592 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSTO010000001.1 Salmonella enterica strain PNUSAS389452 SAMN37753172-rid19668523.denovo.01, whole genome shotgun sequence	414605..415042	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSTO010000021.1 Salmonella enterica strain PNUSAS389452 SAMN37753172-rid19668523.guided.17, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032629425.1_PDT001923948.1_genomic.fna	Salmonella_enterica	0.5221	258.657 KB	8	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNSTP010000001.1 Salmonella enterica strain PNUSAS389449 SAMN37753171-rid19668513.denovo.01, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNSTP010000037.1 Salmonella enterica strain PNUSAS389449 SAMN37753171-rid19668513.guided.31, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNSTP010000006.1	98990..99859	99.77	870	0						
GCA_032629445.1_PDT001923947.1_genomic.fna	Salmonella_enterica	0.522	257.839 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSTQ010000001.1 Salmonella enterica strain PNUSAS389446 SAMN37753168-rid19668503.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNSTQ010000042.1 Salmonella enterica strain PNUSAS389446 SAMN37753168-rid19668503.guided.29, whole genome shotgun sequence	19894..20331	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSTQ010000024.1 Salmonella enterica strain PNUSAS389446 SAMN37753168-rid19668503.denovo.24, whole genome shotgun sequence	44728..45370	enterobacteriales	IncFII(S)	100	262 / 262	ABNSTQ010000024.1 Salmonella enterica strain PNUSAS389446 SAMN37753168-rid19668503.denovo.24, whole genome shotgun sequence	29382..29643																																																avrA	ABNSTQ010000004.1	174651..175519	100	869	0						
GCA_032629465.1_PDT001923945.1_genomic.fna	Salmonella_enterica	0.5203	282.346 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	ColRNAI,IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSTT010000001.1 Salmonella enterica strain PNUSAS389447 SAMN37753169-rid19668483.denovo.01, whole genome shotgun sequence	593671..594108	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSTT010000038.1 Salmonella enterica strain PNUSAS389447 SAMN37753169-rid19668483.denovo.43, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSTT010000038.1 Salmonella enterica strain PNUSAS389447 SAMN37753169-rid19668483.denovo.43, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNSTT010000052.1 Salmonella enterica strain PNUSAS389447 SAMN37753169-rid19668483.guided.32, whole genome shotgun sequence	20587..21024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSTT010000054.1 Salmonella enterica strain PNUSAS389447 SAMN37753169-rid19668483.guided.41, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSTT010000054.1 Salmonella enterica strain PNUSAS389447 SAMN37753169-rid19668483.guided.41, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNSTT010000041.1 Salmonella enterica strain PNUSAS389447 SAMN37753169-rid19668483.denovo.47, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNSTT010000055.1 Salmonella enterica strain PNUSAS389447 SAMN37753169-rid19668483.guided.46, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNSTT010000038.1 Salmonella enterica strain PNUSAS389447 SAMN37753169-rid19668483.denovo.43, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNSTT010000054.1 Salmonella enterica strain PNUSAS389447 SAMN37753169-rid19668483.guided.41, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNSTT010000031.1 Salmonella enterica strain PNUSAS389447 SAMN37753169-rid19668483.denovo.34, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSTT010000053.1 Salmonella enterica strain PNUSAS389447 SAMN37753169-rid19668483.guided.35, whole genome shotgun sequence	9827..11032	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	ColRNAI	90.08	131 / 130	ABNSTT010000036.1 Salmonella enterica strain PNUSAS389447 SAMN37753169-rid19668483.denovo.40, whole genome shotgun sequence	4021..4151	enterobacteriales	IncY	99.74	765 / 765	ABNSTT010000016.1 Salmonella enterica strain PNUSAS389447 SAMN37753169-rid19668483.denovo.16, whole genome shotgun sequence	63874..64638																																																avrA	ABNSTT010000002.1	573781..574650	99.885	870	0						
GCA_032629485.1_PDT001923946.1_genomic.fna	Salmonella_enterica	0.5207	442.696 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSTR010000001.1 Salmonella enterica strain PNUSAS389443 SAMN37753165-rid19668493.denovo.01, whole genome shotgun sequence	628538..628975	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSTR010000024.1 Salmonella enterica strain PNUSAS389443 SAMN37753165-rid19668493.guided.21, whole genome shotgun sequence	78..515	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNSTR010000015.1 Salmonella enterica strain PNUSAS389443 SAMN37753165-rid19668493.denovo.15, whole genome shotgun sequence	34944..35477																																																						avrA	ABNSTR010000008.1	192358..193228	99.196	871	0						
GCA_032629505.1_PDT001923944.1_genomic.fna	Salmonella_enterica	0.5222	472.835 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_603	2783	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_603	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNSTS010000001.1 Salmonella enterica strain PNUSAS389445 SAMN37753167-rid19668473.denovo.01, whole genome shotgun sequence	674348..674785	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNSTS010000017.1 Salmonella enterica strain PNUSAS389445 SAMN37753167-rid19668473.guided.11, whole genome shotgun sequence	36750..37187	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSTS010000005.1	175681..176550	99.54	870	0						
GCA_032629525.1_PDT001923943.1_genomic.fna	Salmonella_enterica	0.5213	257.839 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSTU010000001.1 Salmonella enterica strain PNUSAS389444 SAMN37753166-rid19668463.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNSTU010000039.1 Salmonella enterica strain PNUSAS389444 SAMN37753166-rid19668463.guided.25, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSTU010000025.1 Salmonella enterica strain PNUSAS389444 SAMN37753166-rid19668463.denovo.26, whole genome shotgun sequence	44718..45360	enterobacteriales	IncFII(S)	100	262 / 262	ABNSTU010000025.1 Salmonella enterica strain PNUSAS389444 SAMN37753166-rid19668463.denovo.26, whole genome shotgun sequence	29372..29633																																																avrA	ABNSTU010000007.1	97953..98821	100	869	0						
GCA_032629545.1_PDT001923942.1_genomic.fna	Salmonella_enterica	0.5211	261.852 KB	6	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSTV010000020.1 Salmonella enterica strain PNUSAS389448 SAMN37753170-rid19668453.denovo.20, whole genome shotgun sequence	43264..43701	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSTV010000038.1 Salmonella enterica strain PNUSAS389448 SAMN37753170-rid19668453.guided.25, whole genome shotgun sequence	43297..43734	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNSTV010000021.1 Salmonella enterica strain PNUSAS389448 SAMN37753170-rid19668453.denovo.21, whole genome shotgun sequence	34958..35491																																																						avrA	ABNSTV010000007.1	219359..220228	99.425	870	0						
GCA_032629745.1_PDT001923930.1_genomic.fna	Salmonella_enterica	0.5222	80.08 KB	20	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSUE010000050.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325593 SAMN37752501-rid19668363.denovo.051, whole genome shotgun sequence	14115..14552	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSUE010000122.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325593 SAMN37752501-rid19668363.guided.050, whole genome shotgun sequence	14147..14584	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSUE010000073.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325593 SAMN37752501-rid19668363.denovo.075, whole genome shotgun sequence	9346..9988	enterobacteriales	IncFII(S)	100	262 / 262	ABNSUE010000085.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325593 SAMN37752501-rid19668363.denovo.088, whole genome shotgun sequence	3420..3681																																																avrA	ABNSUE010000018.1	81685..82554	99.54	870	0						
GCA_032629765.1_PDT001923929.1_genomic.fna	Salmonella_enterica	0.5216	141.463 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSUF010000008.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325592 SAMN37752500-rid19668353.denovo.08, whole genome shotgun sequence	51128..51565	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSUF010000066.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325592 SAMN37752500-rid19668353.guided.40, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNSUF010000002.1	149426..150295	99.54	870	0						
GCA_032629785.1_PDT001923931.1_genomic.fna	Salmonella_enterica	0.5209	48.069 KB	32	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSUD010000064.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325590 SAMN37752497-rid19669143.denovo.064, whole genome shotgun sequence	12482..12919	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSUD010000111.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325590 SAMN37752497-rid19669143.denovo.113, whole genome shotgun sequence	6437..7273	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSUD010000111.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325590 SAMN37752497-rid19669143.denovo.113, whole genome shotgun sequence	7273..8076	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNSUD010000203.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325590 SAMN37752497-rid19669143.guided.102, whole genome shotgun sequence	14649..15086	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSUD010000204.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325590 SAMN37752497-rid19669143.guided.125, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSUD010000204.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325590 SAMN37752497-rid19669143.guided.125, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNSUD010000145.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325590 SAMN37752497-rid19669143.denovo.148, whole genome shotgun sequence	2202..3407	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSUD010000205.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325590 SAMN37752497-rid19669143.guided.156, whole genome shotgun sequence	1302..2507	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNSUD010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325590 SAMN37752497-rid19669143.denovo.144, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNSUD010000111.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325590 SAMN37752497-rid19669143.denovo.113, whole genome shotgun sequence	5553..5814		enterobacteriales	IncFII	96.95	262 / 261	ABNSUD010000204.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325590 SAMN37752497-rid19669143.guided.125, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNSUD010000102.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325590 SAMN37752497-rid19669143.denovo.104, whole genome shotgun sequence	5664..5805		enterobacteriales	IncX1	100	373 / 373	ABNSUD010000155.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325590 SAMN37752497-rid19669143.denovo.159, whole genome shotgun sequence	2153..2525																											avrA	ABNSUD010000042.1	39484..40353	99.655	870	0						
GCA_032629805.1_PDT001923933.1_genomic.fna	Salmonella_enterica	0.5216	98.571 KB	15	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSUC010000007.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325596 SAMN37752504-rid19668383.denovo.007, whole genome shotgun sequence	15384..15821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSUC010000109.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325596 SAMN37752504-rid19668383.guided.059, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	ABNSUC010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325596 SAMN37752504-rid19668383.denovo.047, whole genome shotgun sequence	16913..17172	enterobacteriales	IncX1	98.66	374 / 374	ABNSUC010000088.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325596 SAMN37752504-rid19668383.denovo.091, whole genome shotgun sequence	1036..1409																																																avrA	ABNSUC010000002.1	174821..175689	99.655	870	0						
GCA_032629825.1_PDT001923932.1_genomic.fna	Salmonella_enterica	0.5221	105.18 KB	16	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNSUB010000004.1 Salmonella enterica subsp. enterica serovar Javiana strain FSIS12325597 SAMN37752505-rid19668373.denovo.04, whole genome shotgun sequence	85757..86194	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNSUB010000089.1 Salmonella enterica subsp. enterica serovar Javiana strain FSIS12325597 SAMN37752505-rid19668373.guided.39, whole genome shotgun sequence	42382..42819	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSUB010000010.1	61790..62658	99.425	870	0						
GCA_032629845.1_PDT001923927.1_genomic.fna	Salmonella_enterica	0.5219	207.445 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSUH010000001.1 Salmonella enterica strain PNUSAS389433 SAMN37752490-rid19668333.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	354/438	ABNSUH010000041.1 Salmonella enterica strain PNUSAS389433 SAMN37752490-rid19668333.guided.35, whole genome shotgun sequence	1..354	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNSUH010000006.1	184950..185818	99.77	870	0						
GCA_032629865.1_PDT001923926.1_genomic.fna	Salmonella_enterica	0.521	443.924 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncX4	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSUI010000001.1 Salmonella enterica strain PNUSAS389438 SAMN37752487-rid19669133.denovo.01, whole genome shotgun sequence	773247..773684	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNSUI010000051.1 Salmonella enterica strain PNUSAS389438 SAMN37752487-rid19669133.guided.20, whole genome shotgun sequence	4423..4860	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNSUI010000028.1 Salmonella enterica strain PNUSAS389438 SAMN37752487-rid19669133.denovo.31, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNSUI010000053.1 Salmonella enterica strain PNUSAS389438 SAMN37752487-rid19669133.guided.34, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNSUI010000028.1 Salmonella enterica strain PNUSAS389438 SAMN37752487-rid19669133.denovo.31, whole genome shotgun sequence	1150..1280	enterobacteriales	Col440I	94.74	114 / 114	ABNSUI010000025.1 Salmonella enterica strain PNUSAS389438 SAMN37752487-rid19669133.denovo.28, whole genome shotgun sequence	288..401		enterobacteriales	IncX4	98.88	712 / 712	ABNSUI010000016.1 Salmonella enterica strain PNUSAS389438 SAMN37752487-rid19669133.denovo.17, whole genome shotgun sequence	28680..29391																																									avrA	ABNSUI010000002.1	183125..183994	98.966	870	0						
GCA_032629885.1_PDT001923924.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSUK010000001.1 Salmonella enterica strain PNUSAS389428 SAMN37752483-rid19668313.denovo.01, whole genome shotgun sequence	749869..750306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSUK010000027.1 Salmonella enterica strain PNUSAS389428 SAMN37752483-rid19668313.guided.19, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSUK010000013.1 Salmonella enterica strain PNUSAS389428 SAMN37752483-rid19668313.denovo.13, whole genome shotgun sequence	40541..41183	enterobacteriales	IncFII(S)	100	262 / 262	ABNSUK010000017.1 Salmonella enterica strain PNUSAS389428 SAMN37752483-rid19668313.denovo.20, whole genome shotgun sequence	3404..3665																																																avrA	ABNSUK010000002.1	553625..554494	99.54	870	0						
GCA_032629895.1_PDT001923928.1_genomic.fna	Salmonella_enterica	0.5216	112.107 KB	12	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNSUG010000007.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325433 SAMN37752493-rid19668343.denovo.07, whole genome shotgun sequence	20881..21318	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSUG010000056.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325433 SAMN37752493-rid19668343.denovo.60, whole genome shotgun sequence	5994..6830	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNSUG010000056.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325433 SAMN37752493-rid19668343.denovo.60, whole genome shotgun sequence	4963..5776	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	aph(3'')-Ib	100	804/804	ABNSUG010000056.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325433 SAMN37752493-rid19668343.denovo.60, whole genome shotgun sequence	6830..7633	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNSUG010000084.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325433 SAMN37752493-rid19668343.guided.53, whole genome shotgun sequence	7267..7704	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSUG010000087.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325433 SAMN37752493-rid19668343.guided.61, whole genome shotgun sequence	3317..4153	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNSUG010000087.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325433 SAMN37752493-rid19668343.guided.61, whole genome shotgun sequence	4371..5184	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	aph(3'')-Ib	100	804/804	ABNSUG010000087.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325433 SAMN37752493-rid19668343.guided.61, whole genome shotgun sequence	2514..3317	Streptomycin	AF321551	sul2	99.88	816/816	ABNSUG010000033.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325433 SAMN37752493-rid19668343.denovo.33, whole genome shotgun sequence	3077..3892	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNSUG010000086.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325433 SAMN37752493-rid19668343.guided.58, whole genome shotgun sequence	11790..12605	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNSUG010000062.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325433 SAMN37752493-rid19668343.denovo.68, whole genome shotgun sequence	2328..3533	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSUG010000088.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325433 SAMN37752493-rid19668343.guided.67, whole genome shotgun sequence	2359..3564	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNSUG010000064.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325433 SAMN37752493-rid19668343.denovo.70, whole genome shotgun sequence	557..687																																																						avrA	ABNSUG010000009.1	122472..123340	99.655	869	0						
GCA_032629925.1_PDT001923925.1_genomic.fna	Salmonella_enterica	0.5211	235.805 KB	6	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNSUJ010000001.1 Salmonella enterica strain PNUSAS389427 SAMN37752489-rid19668323.denovo.01, whole genome shotgun sequence	767012..767449	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNSUJ010000041.1 Salmonella enterica strain PNUSAS389427 SAMN37752489-rid19668323.guided.29, whole genome shotgun sequence	5929..6366	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNSUJ010000030.1 Salmonella enterica strain PNUSAS389427 SAMN37752489-rid19668323.denovo.32, whole genome shotgun sequence	3981..4111																																																						avrA	ABNSUJ010000004.1	140114..140983	99.425	870	0						
GCA_032629945.1_PDT001923923.1_genomic.fna	Salmonella_enterica	0.5214	379.013 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSUL010000001.1 Salmonella enterica strain PNUSAS389439 SAMN37752486-rid19668303.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSUL010000032.1 Salmonella enterica strain PNUSAS389439 SAMN37752486-rid19668303.guided.26, whole genome shotgun sequence	774..1211	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSUL010000020.1 Salmonella enterica strain PNUSAS389439 SAMN37752486-rid19668303.denovo.20, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNSUL010000022.1 Salmonella enterica strain PNUSAS389439 SAMN37752486-rid19668303.denovo.23, whole genome shotgun sequence	3395..3656																																																avrA	ABNSUL010000002.1	553468..554337	99.54	870	0						
GCA_032629965.1_PDT001923921.1_genomic.fna	Salmonella_enterica	0.5222	257.839 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSUN010000002.1 Salmonella enterica strain PNUSAS389440 SAMN37752488-rid19669123.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNSUN010000042.1 Salmonella enterica strain PNUSAS389440 SAMN37752488-rid19669123.guided.33, whole genome shotgun sequence	4125..4562	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSUN010000017.1 Salmonella enterica strain PNUSAS389440 SAMN37752488-rid19669123.denovo.17, whole genome shotgun sequence	48424..49066	enterobacteriales	IncFII(S)	100	262 / 262	ABNSUN010000017.1 Salmonella enterica strain PNUSAS389440 SAMN37752488-rid19669123.denovo.17, whole genome shotgun sequence	64151..64412																																																avrA	ABNSUN010000001.1	401461..402329	100	869	0						
GCA_032629985.1_PDT001923920.1_genomic.fna	Salmonella_enterica	0.5219	229.306 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSUP010000001.1 Salmonella enterica strain PNUSAS389430 SAMN37752484-rid19668283.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNSUP010000042.1 Salmonella enterica strain PNUSAS389430 SAMN37752484-rid19668283.guided.36, whole genome shotgun sequence	2181..2618	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNSUP010000002.1	218433..219301	99.77	870	0						
GCA_032630005.1_PDT001923922.1_genomic.fna	Salmonella_enterica	0.5214	494.191 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSUM010000001.1 Salmonella enterica strain PNUSAS389435 SAMN37752482-rid19668293.denovo.01, whole genome shotgun sequence	177157..177594	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSUM010000028.1 Salmonella enterica strain PNUSAS389435 SAMN37752482-rid19668293.guided.21, whole genome shotgun sequence	10073..10510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNSUM010000013.1 Salmonella enterica strain PNUSAS389435 SAMN37752482-rid19668293.denovo.13, whole genome shotgun sequence	7761..8294																																																						avrA	ABNSUM010000002.1	563786..564655	99.77	870	0						
GCA_032630025.1_PDT001923919.1_genomic.fna	Salmonella_enterica	0.521	394.338 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI(Gamma)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSUO010000001.1 Salmonella enterica strain PNUSAS389434 SAMN37752485-rid19668273.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSUO010000037.1 Salmonella enterica strain PNUSAS389434 SAMN37752485-rid19668273.guided.26, whole genome shotgun sequence	2008..2445	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI(Gamma)	97.81	137 / 141	ABNSUO010000014.1 Salmonella enterica strain PNUSAS389434 SAMN37752485-rid19668273.denovo.14, whole genome shotgun sequence	71412..71548																																																						avrA	ABNSUO010000002.1	145182..146051	99.31	870	0						
GCA_032630045.1_PDT001923918.1_genomic.fna	Salmonella_enterica	0.5214	274.86 KB	6	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSUQ010000001.1 Salmonella enterica strain PNUSAS389437 SAMN37752480-rid19668263.denovo.01, whole genome shotgun sequence	482600..483037	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNSUQ010000044.1 Salmonella enterica strain PNUSAS389437 SAMN37752480-rid19668263.guided.28, whole genome shotgun sequence	16755..17192	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSUQ010000024.1 Salmonella enterica strain PNUSAS389437 SAMN37752480-rid19668263.denovo.25, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNSUQ010000024.1 Salmonella enterica strain PNUSAS389437 SAMN37752480-rid19668263.denovo.25, whole genome shotgun sequence	9325..9586																																																avrA	ABNSUQ010000004.1	174642..175511	99.885	870	0						
GCA_032630065.1_PDT001923917.1_genomic.fna	Salmonella_enterica	0.5219	257.539 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSUS010000001.1 Salmonella enterica strain PNUSAS389431 SAMN37752477-rid19668253.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNSUS010000043.1 Salmonella enterica strain PNUSAS389431 SAMN37752477-rid19668253.guided.37, whole genome shotgun sequence	1827..2264	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNSUS010000002.1	184950..185818	99.77	870	0						
GCA_032630085.1_PDT001923916.1_genomic.fna	Salmonella_enterica	0.5229	397.334 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSUR010000002.1 Salmonella enterica strain PNUSAS389436 SAMN37752481-rid19669113.denovo.02, whole genome shotgun sequence	352639..353076	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSUR010000036.1 Salmonella enterica strain PNUSAS389436 SAMN37752481-rid19669113.guided.28, whole genome shotgun sequence	3474..3911	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032630095.1_PDT001923915.1_genomic.fna	Salmonella_enterica	0.5185	277.44 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	20	aac(6')-Iaa,aac(3)-IId,aadA22,aph(3')-Ia,aac(6')-Iaa,aac(3)-IId,aadA22,aph(3')-Ia,blaCTX-M-55,blaLAP-2,blaTEM-216,blaTEM-214,blaTEM-209,blaTEM-206,blaTEM-141,blaTEM-1B,blaCTX-M-55,blaLAP-2,blaTEM-216,blaTEM-214,blaTEM-209,blaTEM-206,blaTEM-141,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul3,tet(B),tet(B),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSUX010000001.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.01, whole genome shotgun sequence	581088..581525	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNSUX010000042.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.49, whole genome shotgun sequence	263..1123	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNSUX010000047.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.57, whole genome shotgun sequence	944..1735	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABNSUX010000055.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.68, whole genome shotgun sequence	239..1054	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EF015636	aac(6')-Iaa	100	438/438	ABNSUX010000072.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.36, whole genome shotgun sequence	13042..13479	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNSUX010000077.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.50, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNSUX010000081.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.62, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABNSUX010000083.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.71, whole genome shotgun sequence	163..978	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EF015636	blaCTX-M-55	100	876/876	ABNSUX010000034.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.37, whole genome shotgun sequence	2969..3844	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNSUX010000041.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.48, whole genome shotgun sequence	2921..3778	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-216	100	717/861	ABNSUX010000041.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.48, whole genome shotgun sequence	1..717	Unknown Beta-lactam	KF944358	blaTEM-214	100	717/861	ABNSUX010000041.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.48, whole genome shotgun sequence	1..717	Unknown Beta-lactam	KP050491	blaTEM-209	100	717/861	ABNSUX010000041.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.48, whole genome shotgun sequence	1..717	Unknown Beta-lactam	KF240808	blaTEM-206	100	717/861	ABNSUX010000041.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.48, whole genome shotgun sequence	1..717	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	100	717/861	ABNSUX010000041.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.48, whole genome shotgun sequence	1..717	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	100	717/861	ABNSUX010000041.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.48, whole genome shotgun sequence	1..717	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNSUX010000075.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.44, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNSUX010000076.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.47, whole genome shotgun sequence	2962..3819	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-216	100	719/861	ABNSUX010000076.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.47, whole genome shotgun sequence	40..758	Unknown Beta-lactam	KF944358	blaTEM-214	100	719/861	ABNSUX010000076.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.47, whole genome shotgun sequence	40..758	Unknown Beta-lactam	KP050491	blaTEM-209	100	719/861	ABNSUX010000076.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.47, whole genome shotgun sequence	40..758	Unknown Beta-lactam	KF240808	blaTEM-206	100	719/861	ABNSUX010000076.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.47, whole genome shotgun sequence	40..758	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	100	719/861	ABNSUX010000076.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.47, whole genome shotgun sequence	40..758	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	100	719/861	ABNSUX010000076.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.47, whole genome shotgun sequence	40..758	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNSUX010000043.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.52, whole genome shotgun sequence	2576..3481	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNSUX010000047.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.57, whole genome shotgun sequence	1867..2688	Lincomycin	EU118119	mph(A)	100	906/906	ABNSUX010000078.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.51, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNSUX010000081.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.62, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABNSUX010000035.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.39, whole genome shotgun sequence	708..1921	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNSUX010000080.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.59, whole genome shotgun sequence	1114..2327	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNSUX010000038.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.43, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNSUX010000074.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.42, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNSUX010000050.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.61, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNSUX010000082.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.63, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNSUX010000033.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.35, whole genome shotgun sequence	13388..14179	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNSUX010000079.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.55, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNSUX010000031.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.32, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSUX010000073.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.38, whole genome shotgun sequence	5245..6450	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNSUX010000050.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.61, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNSUX010000082.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.guided.63, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNSUX010000039.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.45, whole genome shotgun sequence	1939..2067	enterobacteriales	IncHI2	100	327 / 327	ABNSUX010000029.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.29, whole genome shotgun sequence	3960..4286		enterobacteriales	IncHI2A	99.52	630 / 630	ABNSUX010000029.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.29, whole genome shotgun sequence	22270..22899		enterobacteriales	IncN	100	512 / 514	ABNSUX010000057.1 Salmonella enterica strain PNUSAS389432 SAMN37752479-rid19668243.denovo.70, whole genome shotgun sequence	470..981																																		avrA	ABNSUX010000002.1	540735..541604	99.885	870	0						
GCA_032630125.1_PDT001923914.1_genomic.fna	Salmonella_enterica	0.5208	695.726 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSUW010000001.1 Salmonella enterica strain PNUSAS389429 SAMN37752478-rid19668233.denovo.01, whole genome shotgun sequence	414575..415012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSUW010000024.1 Salmonella enterica strain PNUSAS389429 SAMN37752478-rid19668233.guided.18, whole genome shotgun sequence	779..1216	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032630825.1_PDT001923854.1_genomic.fna	Salmonella_enterica	0.5209	228.033 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNSWB010000002.1 Salmonella enterica strain PNUSAS389402 SAMN37747705-rid19668933.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNSWB010000055.1 Salmonella enterica strain PNUSAS389402 SAMN37747705-rid19668933.guided.40, whole genome shotgun sequence	2398..2835	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNSWB010000024.1 Salmonella enterica strain PNUSAS389402 SAMN37747705-rid19668933.denovo.24, whole genome shotgun sequence	44729..45371	enterobacteriales	IncFII(S)	100	262 / 262	ABNSWB010000024.1 Salmonella enterica strain PNUSAS389402 SAMN37747705-rid19668933.denovo.24, whole genome shotgun sequence	29383..29644																																																avrA	ABNSWB010000006.1	95391..96259	100	869	0						
GCA_032630845.1_PDT001923853.1_genomic.fna	Salmonella_enterica	0.5195	154.992 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	2	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-15,blaCTX-M-15	1	gyrA_p.S83F	1	IncY	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNSWC010000008.1 Salmonella enterica strain PNUSAS389400 SAMN37747707-rid19667803.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNSWC010000064.1 Salmonella enterica strain PNUSAS389400 SAMN37747707-rid19667803.guided.46, whole genome shotgun sequence	4019..4453	Amikacin, Tobramycin	NC_003197	blaCTX-M-15	100	876/876	ABNSWC010000050.1 Salmonella enterica strain PNUSAS389400 SAMN37747707-rid19667803.denovo.52, whole genome shotgun sequence	3678..4553	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	ABNSWC010000066.1 Salmonella enterica strain PNUSAS389400 SAMN37747707-rid19667803.guided.61, whole genome shotgun sequence	432..1307	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncY	99.87	765 / 765	ABNSWC010000020.1 Salmonella enterica strain PNUSAS389400 SAMN37747707-rid19667803.denovo.20, whole genome shotgun sequence	64893..65657																																																																	
GCA_032630865.1_PDT001923852.1_genomic.fna	Salmonella_enterica	0.5222	124.919 KB	11	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNSWD010000005.1 Salmonella enterica strain PNUSAS389403 SAMN37747704-rid19667793.denovo.05, whole genome shotgun sequence	145480..145917	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNSWD010000061.1 Salmonella enterica strain PNUSAS389403 SAMN37747704-rid19667793.guided.52, whole genome shotgun sequence	611..1048	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNSWD010000006.1	39473..40342	99.655	870	0						
GCA_032630885.1_PDT001923851.1_genomic.fna	Salmonella_enterica	0.5207	149.985 KB	11	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSWE010000001.1 Salmonella enterica strain PNUSAS389404 SAMN37747706-rid19667783.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSWE010000056.1 Salmonella enterica strain PNUSAS389404 SAMN37747706-rid19667783.guided.41, whole genome shotgun sequence	2586..3023	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNSWE010000027.1 Salmonella enterica strain PNUSAS389404 SAMN37747706-rid19667783.denovo.27, whole genome shotgun sequence	3184..3717																																																						avrA	ABNSWE010000006.1	153640..154509	99.425	870	0						
GCA_032630905.1_PDT001923849.1_genomic.fna	Salmonella_enterica	0.5217	83.97 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSWG010000007.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314523 SAMN37736532-rid19668923.denovo.007, whole genome shotgun sequence	75539..75976	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSWG010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314523 SAMN37736532-rid19668923.denovo.061, whole genome shotgun sequence	22779..23570	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSWG010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314523 SAMN37736532-rid19668923.denovo.061, whole genome shotgun sequence	22779..23570	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNSWG010000148.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314523 SAMN37736532-rid19668923.guided.052, whole genome shotgun sequence	15408..15845	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSWG010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314523 SAMN37736532-rid19668923.guided.095, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSWG010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314523 SAMN37736532-rid19668923.guided.095, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNSWG010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314523 SAMN37736532-rid19668923.denovo.061, whole genome shotgun sequence	21435..22274	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSWG010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314523 SAMN37736532-rid19668923.guided.095, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSWG010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314523 SAMN37736532-rid19668923.denovo.061, whole genome shotgun sequence	7719..8918	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSWG010000149.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314523 SAMN37736532-rid19668923.guided.069, whole genome shotgun sequence	10013..11212	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSWG010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314523 SAMN37736532-rid19668923.denovo.094, whole genome shotgun sequence	2231..2790	enterobacteriales	IncX1	98.93	374 / 374	ABNSWG010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314523 SAMN37736532-rid19668923.denovo.151, whole genome shotgun sequence	135..508																																																avrA	ABNSWG010000004.1	66638..67507	99.655	870	0						
GCA_032630925.1_PDT001923850.1_genomic.fna	Salmonella_enterica	0.5225	64.186 KB	25	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSWF010000018.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314521 SAMN37736530-rid19667773.denovo.018, whole genome shotgun sequence	18122..18559	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSWF010000150.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314521 SAMN37736530-rid19667773.guided.024, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSWF010000099.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314521 SAMN37736530-rid19667773.denovo.102, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNSWF010000113.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314521 SAMN37736530-rid19667773.denovo.116, whole genome shotgun sequence	3369..3630																																																avrA	ABNSWF010000036.1	43559..44428	99.54	870	0						
GCA_032630945.1_PDT001923848.1_genomic.fna	Salmonella_enterica	0.519	49.768 KB	31	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	3	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aph(6)-Id	100	837/837	ABNSWH010000067.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314519 SAMN37736528-rid19667763.denovo.067, whole genome shotgun sequence	2315..3151	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNSWH010000067.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314519 SAMN37736528-rid19667763.denovo.067, whole genome shotgun sequence	1513..2315	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNSWH010000067.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314519 SAMN37736528-rid19667763.denovo.067, whole genome shotgun sequence	1512..2315	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNSWH010000067.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314519 SAMN37736528-rid19667763.denovo.067, whole genome shotgun sequence	1512..2315	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNSWH010000067.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314519 SAMN37736528-rid19667763.denovo.067, whole genome shotgun sequence	1512..2315	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNSWH010000091.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314519 SAMN37736528-rid19667763.denovo.092, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSWH010000239.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314519 SAMN37736528-rid19667763.guided.071, whole genome shotgun sequence	2356..3192	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNSWH010000239.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314519 SAMN37736528-rid19667763.guided.071, whole genome shotgun sequence	1554..2356	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNSWH010000239.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314519 SAMN37736528-rid19667763.guided.071, whole genome shotgun sequence	1553..2356	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNSWH010000239.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314519 SAMN37736528-rid19667763.guided.071, whole genome shotgun sequence	1553..2356	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNSWH010000239.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314519 SAMN37736528-rid19667763.guided.071, whole genome shotgun sequence	1553..2356	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNSWH010000242.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314519 SAMN37736528-rid19667763.guided.120, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNSWH010000105.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314519 SAMN37736528-rid19667763.denovo.107, whole genome shotgun sequence	6901..7227	enterobacteriales	IncHI2A	99.52	630 / 630	ABNSWH010000101.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314519 SAMN37736528-rid19667763.denovo.103, whole genome shotgun sequence	11887..12516		enterobacteriales	IncX1	100	373 / 373	ABNSWH010000169.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314519 SAMN37736528-rid19667763.denovo.173, whole genome shotgun sequence	2218..2590																																									avrA	ABNSWH010000009.1	94074..94943	99.655	870	0						
GCA_032630965.1_PDT001923847.1_genomic.fna	Salmonella_enterica	0.5232	56.089 KB	28	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aph(6)-Id	100	837/837	ABNSWI010000009.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314514 SAMN37736306-rid19667753.denovo.009, whole genome shotgun sequence	6829..7665	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNSWI010000009.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314514 SAMN37736306-rid19667753.denovo.009, whole genome shotgun sequence	5798..6611	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	V00359	aph(3'')-Ib	100	804/804	ABNSWI010000009.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314514 SAMN37736306-rid19667753.denovo.009, whole genome shotgun sequence	7665..8468	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNSWI010000059.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314514 SAMN37736306-rid19667753.denovo.059, whole genome shotgun sequence	12373..12810	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSWI010000173.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314514 SAMN37736306-rid19667753.guided.094, whole genome shotgun sequence	7939..8775	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNSWI010000173.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314514 SAMN37736306-rid19667753.guided.094, whole genome shotgun sequence	8993..9806	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	V00359	aph(3'')-Ib	100	804/804	ABNSWI010000173.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314514 SAMN37736306-rid19667753.guided.094, whole genome shotgun sequence	7136..7939	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNSWI010000175.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314514 SAMN37736306-rid19667753.guided.115, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul2	99.88	816/816	ABNSWI010000109.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314514 SAMN37736306-rid19667753.denovo.111, whole genome shotgun sequence	1755..2570	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNSWI010000176.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314514 SAMN37736306-rid19667753.guided.116, whole genome shotgun sequence	7268..8083	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNSWI010000140.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314514 SAMN37736306-rid19667753.denovo.146, whole genome shotgun sequence	2206..3411	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSWI010000178.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314514 SAMN37736306-rid19667753.guided.145, whole genome shotgun sequence	2220..3425	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNSWI010000134.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314514 SAMN37736306-rid19667753.denovo.139, whole genome shotgun sequence	2209..2339																																																						avrA	ABNSWI010000016.1	61537..62405	99.655	869	0						
GCA_032630985.1_PDT001923846.1_genomic.fna	Salmonella_enterica	0.5225	53.226 KB	29	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSWJ010000079.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314464 SAMN37736311-rid19667743.denovo.080, whole genome shotgun sequence	12533..12970	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSWJ010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314464 SAMN37736311-rid19667743.guided.111, whole genome shotgun sequence	7383..7820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNSWJ010000106.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314464 SAMN37736311-rid19667743.denovo.107, whole genome shotgun sequence	1128..1387	enterobacteriales	IncX1	100	373 / 373	ABNSWJ010000151.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314464 SAMN37736311-rid19667743.denovo.154, whole genome shotgun sequence	2153..2525																																																avrA	ABNSWJ010000034.1	39484..40353	99.655	870	0						
GCA_032631005.1_PDT001923845.1_genomic.fna	Salmonella_enterica	0.5223	58.687 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSWK010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314517 SAMN37736309-rid19667733.denovo.001, whole genome shotgun sequence	232621..233058	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSWK010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314517 SAMN37736309-rid19667733.denovo.067, whole genome shotgun sequence	22731..23522	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSWK010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314517 SAMN37736309-rid19667733.denovo.067, whole genome shotgun sequence	22731..23522	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNSWK010000173.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314517 SAMN37736309-rid19667733.guided.094, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSWK010000173.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314517 SAMN37736309-rid19667733.guided.094, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNSWK010000174.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314517 SAMN37736309-rid19667733.guided.106, whole genome shotgun sequence	7419..7856	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNSWK010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314517 SAMN37736309-rid19667733.denovo.067, whole genome shotgun sequence	21387..22226	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSWK010000173.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314517 SAMN37736309-rid19667733.guided.094, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSWK010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314517 SAMN37736309-rid19667733.denovo.067, whole genome shotgun sequence	7671..8870	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSWK010000175.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314517 SAMN37736309-rid19667733.guided.134, whole genome shotgun sequence	1491..2690	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSWK010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314517 SAMN37736309-rid19667733.denovo.105, whole genome shotgun sequence	8425..8984	enterobacteriales	IncX1	98.66	374 / 374	ABNSWK010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314517 SAMN37736309-rid19667733.denovo.163, whole genome shotgun sequence	167..540																																																avrA	ABNSWK010000042.1	39430..40299	99.655	870	0						
GCA_032631025.1_PDT001923843.1_genomic.fna	Salmonella_enterica	0.5224	46.422 KB	33	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSWM010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314516 SAMN37736308-rid19667723.denovo.015, whole genome shotgun sequence	11361..11798	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNSWM010000225.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314516 SAMN37736308-rid19667723.guided.100, whole genome shotgun sequence	15467..15904	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSWM010000159.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314516 SAMN37736308-rid19667723.denovo.162, whole genome shotgun sequence	941..1500																																																						avrA	ABNSWM010000037.1	39703..40572	99.655	870	0						
GCA_032631045.1_PDT001923844.1_genomic.fna	Salmonella_enterica	0.5214	30.772 KB	53	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	14	aac(6')-Iaa,aac(3)-IId,aadA22,aph(3')-Ia,aac(6')-Iaa,aac(3)-IId,aadA22,aph(3')-Ia,blaCTX-M-55,blaTEM-1B,blaLAP-2,blaTEM-1B,blaLAP-2,blaCTX-M-55,mph(A),lnu(F),mph(A),lnu(F),qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul3,tet(B),tet(B),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSWL010000060.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.060, whole genome shotgun sequence	12454..12891	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNSWL010000228.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.233, whole genome shotgun sequence	261..1121	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNSWL010000253.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.261, whole genome shotgun sequence	238..1029	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABNSWL010000282.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.295, whole genome shotgun sequence	239..1054	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EF015636	aac(6')-Iaa	100	438/438	ABNSWL010000319.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.guided.130, whole genome shotgun sequence	1536..1973	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNSWL010000323.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.guided.235, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNSWL010000326.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.guided.268, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABNSWL010000330.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.guided.291, whole genome shotgun sequence	163..978	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EF015636	blaCTX-M-55	100	876/876	ABNSWL010000210.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.213, whole genome shotgun sequence	533..1408	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNSWL010000220.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.225, whole genome shotgun sequence	67..927	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNSWL010000220.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.225, whole genome shotgun sequence	3131..3988	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNSWL010000322.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.guided.221, whole genome shotgun sequence	98..958	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNSWL010000322.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.guided.221, whole genome shotgun sequence	3162..4019	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaCTX-M-55	100	876/876	ABNSWL010000328.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.guided.279, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	mph(A)	100	906/906	ABNSWL010000230.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.237, whole genome shotgun sequence	2576..3481	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNSWL010000253.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.261, whole genome shotgun sequence	1161..1982	Lincomycin	EU118119	mph(A)	100	906/906	ABNSWL010000324.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.guided.236, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNSWL010000326.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.guided.268, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	qnrS1	100	657/657	ABNSWL010000216.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.220, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNSWL010000321.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.guided.218, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABNSWL010000260.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.269, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNSWL010000327.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.guided.273, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNSWL010000243.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.251, whole genome shotgun sequence	407..1198	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNSWL010000329.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.guided.283, whole genome shotgun sequence	165..956	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNSWL010000234.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.242, whole genome shotgun sequence	1853..3058	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSWL010000325.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.guided.240, whole genome shotgun sequence	1884..3089	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNSWL010000260.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.269, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNSWL010000327.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.guided.273, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNSWL010000219.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.224, whole genome shotgun sequence	1939..2067	enterobacteriales	IncHI2	100	327 / 327	ABNSWL010000099.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.099, whole genome shotgun sequence	13558..13884		enterobacteriales	IncHI2A	99.52	630 / 630	ABNSWL010000173.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.176, whole genome shotgun sequence	751..1380		enterobacteriales	IncN	100	512 / 514	ABNSWL010000289.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314515 SAMN37736307-rid19668913.denovo.302, whole genome shotgun sequence	470..981																																		avrA	ABNSWL010000029.1	43730..44599	99.885	870	0						
GCA_032631065.1_PDT001923842.1_genomic.fna	Salmonella_enterica	0.5233	50.853 KB	33	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSWN010000020.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314461 SAMN37736297-rid19667713.denovo.020, whole genome shotgun sequence	12489..12926	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSWN010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314461 SAMN37736297-rid19667713.denovo.104, whole genome shotgun sequence	11942..12733	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSWN010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314461 SAMN37736297-rid19667713.denovo.104, whole genome shotgun sequence	11942..12733	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNSWN010000182.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314461 SAMN37736297-rid19667713.guided.064, whole genome shotgun sequence	15586..16023	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSWN010000184.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314461 SAMN37736297-rid19667713.guided.130, whole genome shotgun sequence	1157..1948	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSWN010000184.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314461 SAMN37736297-rid19667713.guided.130, whole genome shotgun sequence	1157..1948	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNSWN010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314461 SAMN37736297-rid19667713.denovo.104, whole genome shotgun sequence	10598..11437	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSWN010000184.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314461 SAMN37736297-rid19667713.guided.130, whole genome shotgun sequence	2453..3292	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSWN010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314461 SAMN37736297-rid19667713.denovo.116, whole genome shotgun sequence	1841..3040	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSWN010000185.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314461 SAMN37736297-rid19667713.guided.136, whole genome shotgun sequence	1846..3045	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSWN010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314461 SAMN37736297-rid19667713.denovo.127, whole genome shotgun sequence	5623..6182																																																						avrA	ABNSWN010000043.1	39430..40299	99.655	870	0						
GCA_032631085.1_PDT001923841.1_genomic.fna	Salmonella_enterica	0.5221	59.412 KB	26	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	3	Col440I,ColRNAI,IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNSWP010000020.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314462 SAMN37736298-rid19667703.denovo.020, whole genome shotgun sequence	12591..13028	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNSWP010000171.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314462 SAMN37736298-rid19667703.guided.046, whole genome shotgun sequence	34871..35308	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNSWP010000130.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314462 SAMN37736298-rid19667703.denovo.134, whole genome shotgun sequence	2846..4051	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSWP010000174.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314462 SAMN37736298-rid19667703.guided.132, whole genome shotgun sequence	2824..4029	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABNSWP010000134.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314462 SAMN37736298-rid19667703.denovo.138, whole genome shotgun sequence	2246..2354	enterobacteriales	ColRNAI	90.08	131 / 130	ABNSWP010000125.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314462 SAMN37736298-rid19667703.denovo.128, whole genome shotgun sequence	3981..4111		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNSWP010000107.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314462 SAMN37736298-rid19667703.denovo.110, whole genome shotgun sequence	4766..4907																																									avrA	ABNSWP010000041.1	43484..44353	99.54	870	0						
GCA_032631105.1_PDT001923840.1_genomic.fna	Salmonella_enterica	0.5224	65.142 KB	23	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:f,g:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	f,g	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSWR010000023.1 Salmonella enterica subsp. enterica strain FSIS22314463 SAMN37736299-rid19667693.denovo.023, whole genome shotgun sequence	12421..12858	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSWR010000172.1 Salmonella enterica subsp. enterica strain FSIS22314463 SAMN37736299-rid19667693.guided.074, whole genome shotgun sequence	15465..15902	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNSWR010000126.1 Salmonella enterica subsp. enterica strain FSIS22314463 SAMN37736299-rid19667693.denovo.129, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABNSWR010000112.1 Salmonella enterica subsp. enterica strain FSIS22314463 SAMN37736299-rid19667693.denovo.115, whole genome shotgun sequence	3175..3285																																																avrA	ABNSWR010000001.1	137276..138145	99.425	870	0						
GCA_032631325.1_PDT001923829.1_genomic.fna	Salmonella_enterica	0.5212	113.162 KB	14	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSXA010000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310221 SAMN37710877-rid19668883.denovo.001, whole genome shotgun sequence	223985..224422	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSXA010000075.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310221 SAMN37710877-rid19668883.denovo.080, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSXA010000075.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310221 SAMN37710877-rid19668883.denovo.080, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNSXA010000105.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310221 SAMN37710877-rid19668883.guided.055, whole genome shotgun sequence	8799..9236	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSXA010000107.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310221 SAMN37710877-rid19668883.guided.078, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSXA010000107.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310221 SAMN37710877-rid19668883.guided.078, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNSXA010000084.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310221 SAMN37710877-rid19668883.denovo.089, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNSXA010000108.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310221 SAMN37710877-rid19668883.guided.094, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNSXA010000075.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310221 SAMN37710877-rid19668883.denovo.080, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNSXA010000107.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310221 SAMN37710877-rid19668883.guided.078, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNSXA010000066.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310221 SAMN37710877-rid19668883.denovo.070, whole genome shotgun sequence	2279..3484	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSXA010000106.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310221 SAMN37710877-rid19668883.guided.069, whole genome shotgun sequence	2310..3515	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncY	99.74	765 / 765	ABNSXA010000031.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310221 SAMN37710877-rid19668883.denovo.031, whole genome shotgun sequence	13869..14633																																																						avrA	ABNSXA010000003.1	93863..94732	99.885	870	0						
GCA_032631365.1_PDT001923828.1_genomic.fna	Salmonella_enterica	0.5217	44.511 KB	36	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSXC010000062.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310263 SAMN37710876-rid19667603.denovo.063, whole genome shotgun sequence	11342..11779	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSXC010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310263 SAMN37710876-rid19667603.denovo.071, whole genome shotgun sequence	19475..20311	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSXC010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310263 SAMN37710876-rid19667603.denovo.071, whole genome shotgun sequence	20311..21114	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNSXC010000248.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310263 SAMN37710876-rid19667603.guided.075, whole genome shotgun sequence	10637..11074	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNSXC010000250.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310263 SAMN37710876-rid19667603.guided.150, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNSXC010000250.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310263 SAMN37710876-rid19667603.guided.150, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNSXC010000172.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310263 SAMN37710876-rid19667603.denovo.176, whole genome shotgun sequence	833..2038	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSXC010000251.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310263 SAMN37710876-rid19667603.guided.211, whole genome shotgun sequence	88..1293	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNSXC010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310263 SAMN37710876-rid19667603.denovo.124, whole genome shotgun sequence	6797..7478	enterobacteriales	IncFII	96.95	262 / 261	ABNSXC010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310263 SAMN37710876-rid19667603.denovo.071, whole genome shotgun sequence	18591..18852		enterobacteriales	IncFII	96.95	262 / 261	ABNSXC010000250.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310263 SAMN37710876-rid19667603.guided.150, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNSXC010000195.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310263 SAMN37710876-rid19667603.denovo.199, whole genome shotgun sequence	40..181		enterobacteriales	IncX1	100	373 / 373	ABNSXC010000175.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310263 SAMN37710876-rid19667603.denovo.179, whole genome shotgun sequence	2732..3104																											avrA	ABNSXC010000037.1	39484..40353	99.655	870	0						
GCA_032631405.1_PDT001923823.1_genomic.fna	Salmonella_enterica	0.5205	137.677 KB	13	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSXG010000005.1 Salmonella enterica subsp. enterica serovar Indiana strain FSIS32310276 SAMN37710866-rid19667563.denovo.05, whole genome shotgun sequence	20794..21231	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSXG010000069.1 Salmonella enterica subsp. enterica serovar Indiana strain FSIS32310276 SAMN37710866-rid19667563.guided.49, whole genome shotgun sequence	1628..2065	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032631485.1_PDT001923822.1_genomic.fna	Salmonella_enterica	0.5216	136.549 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNSXH010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310220 SAMN37710868-rid19667553.denovo.04, whole genome shotgun sequence	62366..62803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNSXH010000078.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310220 SAMN37710868-rid19667553.guided.34, whole genome shotgun sequence	30267..30704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNSXH010000047.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310220 SAMN37710868-rid19667553.denovo.50, whole genome shotgun sequence	6826..7468	enterobacteriales	IncFII(S)	100	262 / 262	ABNSXH010000053.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310220 SAMN37710868-rid19667553.denovo.56, whole genome shotgun sequence	3389..3650																																																avrA	ABNSXH010000006.1	81622..82491	99.54	870	0						
GCA_032631505.1_PDT001923819.1_genomic.fna	Salmonella_enterica	0.5203	55.273 KB	28	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	4	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSXM010000015.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314360 SAMN37710830-rid19668863.denovo.015, whole genome shotgun sequence	62414..62851	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSXM010000185.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314360 SAMN37710830-rid19668863.guided.077, whole genome shotgun sequence	14104..14541	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNSXM010000048.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314360 SAMN37710830-rid19668863.denovo.048, whole genome shotgun sequence	17996..18418	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNSXM010000186.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314360 SAMN37710830-rid19668863.guided.079, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014	sul2	100	816/816	ABNSXM010000090.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314360 SAMN37710830-rid19668863.denovo.094, whole genome shotgun sequence	2648..3463	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNSXM010000188.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314360 SAMN37710830-rid19668863.guided.101, whole genome shotgun sequence	10955..11770	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNSXM010000121.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314360 SAMN37710830-rid19668863.denovo.126, whole genome shotgun sequence	1203..2408	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSXM010000189.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314360 SAMN37710830-rid19668863.guided.129, whole genome shotgun sequence	3748..4953	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSXM010000020.1	64443..65312	99.195	870	0						
GCA_032631525.1_PDT001923820.1_genomic.fna	Salmonella_enterica	0.5215	49.87 KB	31	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFII(pSE11),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSXJ010000064.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314443 SAMN37710861-rid19667533.denovo.065, whole genome shotgun sequence	12455..12892	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSXJ010000219.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314443 SAMN37710861-rid19667533.guided.080, whole genome shotgun sequence	15485..15922	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNSXJ010000094.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314443 SAMN37710861-rid19667533.denovo.097, whole genome shotgun sequence	4655..4914	enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNSXJ010000118.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314443 SAMN37710861-rid19667533.denovo.121, whole genome shotgun sequence	4565..4706		enterobacteriales	IncX1	100	373 / 373	ABNSXJ010000148.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314443 SAMN37710861-rid19667533.denovo.151, whole genome shotgun sequence	2153..2525																																									avrA	ABNSXJ010000012.1	39484..40353	99.655	870	0						
GCA_032631555.1_PDT001923818.1_genomic.fna	Salmonella_enterica	0.5221	53.297 KB	29	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSXN010000067.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314453 SAMN37710821-rid19667523.denovo.067, whole genome shotgun sequence	12383..12820	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSXN010000159.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314453 SAMN37710821-rid19667523.guided.109, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	tet(B)	100	1181/1206	ABNSXN010000117.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314453 SAMN37710821-rid19667523.denovo.120, whole genome shotgun sequence	2792..3972	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNSXN010000161.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314453 SAMN37710821-rid19667523.guided.142, whole genome shotgun sequence	77..1282	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNSXN010000119.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314453 SAMN37710821-rid19667523.denovo.122, whole genome shotgun sequence	309..450																																																						avrA	ABNSXN010000006.1	61390..62258	99.195	870	0						
GCA_032631605.1_PDT001923814.1_genomic.fna	Salmonella_enterica	0.523	56.708 KB	29	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSXQ010000019.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314447 SAMN37710810-rid19668853.denovo.019, whole genome shotgun sequence	62417..62854	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNSXQ010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314447 SAMN37710810-rid19668853.denovo.067, whole genome shotgun sequence	22835..23626	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSXQ010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314447 SAMN37710810-rid19668853.denovo.067, whole genome shotgun sequence	22835..23626	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNSXQ010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314447 SAMN37710810-rid19668853.denovo.122, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNSXQ010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314447 SAMN37710810-rid19668853.denovo.122, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNSXQ010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314447 SAMN37710810-rid19668853.guided.066, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNSXQ010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314447 SAMN37710810-rid19668853.guided.066, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNSXQ010000168.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314447 SAMN37710810-rid19668853.guided.069, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNSXQ010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314447 SAMN37710810-rid19668853.guided.121, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNSXQ010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314447 SAMN37710810-rid19668853.guided.121, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNSXQ010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314447 SAMN37710810-rid19668853.denovo.067, whole genome shotgun sequence	21491..22330	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSXQ010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314447 SAMN37710810-rid19668853.guided.066, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSXQ010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314447 SAMN37710810-rid19668853.denovo.067, whole genome shotgun sequence	7775..8974	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSXQ010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314447 SAMN37710810-rid19668853.guided.066, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNSXQ010000022.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314447 SAMN37710810-rid19668853.denovo.022, whole genome shotgun sequence	52141..52700																																																						avrA	ABNSXQ010000004.1	79228..80097	99.655	870	0						
GCA_032631625.1_PDT001923815.1_genomic.fna	Salmonella_enterica	0.5219	67.584 KB	25	aroC_92,dnaN_125,hemD_78,hisD_128,purE_138,sucA_9,thrA_141	463	-:e,h:l,w	3	aac(2')-IIa,aac(6')-Iaa,aac(6')-Iaa,aac(2')-IIa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_92	dnaN	100	100	dnaN_125	hemD	100	100	hemD_78	hisD	100	100	hisD_128	purE	100	100	purE_138	sucA	100	100	sucA_9	thrA	100	100	thrA_141	-	e,h	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(2')-IIa	98.72	783/783	ABNSXP010000057.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS22314445 SAMN37710808-rid19667493.denovo.057, whole genome shotgun sequence	23728..24510	Kasugamycin	AB669090	aac(6')-Iaa	98.86	438/438	ABNSXP010000060.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS22314445 SAMN37710808-rid19667493.denovo.060, whole genome shotgun sequence	12511..12948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNSXP010000151.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS22314445 SAMN37710808-rid19667493.guided.062, whole genome shotgun sequence	14165..14602	Amikacin, Tobramycin	NC_003197	aac(2')-IIa	98.72	783/783	ABNSXP010000155.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS22314445 SAMN37710808-rid19667493.guided.132, whole genome shotgun sequence	520..1302	Kasugamycin	AB669090	fosA7	96.45	423/423	ABNSXP010000027.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS22314445 SAMN37710808-rid19667493.denovo.027, whole genome shotgun sequence	45815..46237	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNSXP010000152.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS22314445 SAMN37710808-rid19667493.guided.064, whole genome shotgun sequence	21554..21976	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSXP010000024.1	61617..62486	98.851	870	0						
GCA_032631765.1_PDT001923789.1_genomic.fna	Salmonella_enterica	0.5218	387.367 KB	4	aroC_710,dnaN_142,hemD_49,hisD_16,purE_40,sucA_35,thrA_3	3806	4:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_710	dnaN	100	100	dnaN_142	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_3	4	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Bredeney		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNSXW010000001.1 Salmonella enterica strain 2211280028 SAMN37734912-rid19667203.denovo.01, whole genome shotgun sequence	655320..655757	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNSXW010000032.1 Salmonella enterica strain 2211280028 SAMN37734912-rid19667203.guided.21, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032631805.1_PDT001923769.1_genomic.fna	Salmonella_enterica	0.5201	278.896 KB	5	aroC_19,dnaN_20!,dnaN_20!,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	Unknown	4:f,g:-	5	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20!	dnaN	100	100	dnaN_20!	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNSXY010000001.1 Salmonella enterica strain 2211280026 SAMN37734911-rid19667073.denovo.01, whole genome shotgun sequence	470360..470797	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNSXY010000019.1 Salmonella enterica strain 2211280026 SAMN37734911-rid19667073.denovo.19, whole genome shotgun sequence	53513..54292	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABNSXY010000044.1 Salmonella enterica strain 2211280026 SAMN37734911-rid19667073.guided.22, whole genome shotgun sequence	30888..31667	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	98.17	438/438	ABNSXY010000045.1 Salmonella enterica strain 2211280026 SAMN37734911-rid19667073.guided.24, whole genome shotgun sequence	16421..16858	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNSXY010000002.1 Salmonella enterica strain 2211280026 SAMN37734911-rid19667073.denovo.02, whole genome shotgun sequence	311934..312356	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNSXY010000046.1 Salmonella enterica strain 2211280026 SAMN37734911-rid19667073.guided.28, whole genome shotgun sequence	6449..6871	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNSXY010000019.1 Salmonella enterica strain 2211280026 SAMN37734911-rid19667073.denovo.19, whole genome shotgun sequence	54797..55636	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSXY010000044.1 Salmonella enterica strain 2211280026 SAMN37734911-rid19667073.guided.22, whole genome shotgun sequence	32172..33011	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNSXY010000025.1 Salmonella enterica strain 2211280026 SAMN37734911-rid19667073.denovo.31, whole genome shotgun sequence	6632..7831	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNSXY010000048.1 Salmonella enterica strain 2211280026 SAMN37734911-rid19667073.guided.30, whole genome shotgun sequence	6673..7872	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.15	113 / 131	ABNSXY010000028.1 Salmonella enterica strain 2211280026 SAMN37734911-rid19667073.denovo.34, whole genome shotgun sequence	1410..1522	enterobacteriales	ColRNAI	90.84	131 / 130	ABNSXY010000026.1 Salmonella enterica strain 2211280026 SAMN37734911-rid19667073.denovo.32, whole genome shotgun sequence	3857..3987																																																avrA	ABNSXY010000003.1	184376..185245	99.655	870	0						
GCA_032631825.1_PDT001923766.1_genomic.fna	Salmonella_enterica	0.5187	228.873 KB	8	aroC_417,dnaN_216,hemD_8,hisD_163,purE_29,sucA_207,thrA_86	1659	30:i:l,w	7	aadA2b,aac(6')-Iaa,aph(6)-Ic,aph(3')-IIa,aadA2b,aac(6')-Iaa,aph(6)-Ic,aph(3')-IIa,lnu(G),lnu(G),sul1,sul1,tet(B),tet(B)	1	parC_p.T57S	2	IncHI2,IncHI2A	aroC	100	100	aroC_417	dnaN	100	100	dnaN_216	hemD	100	100	hemD_8	hisD	100	100	hisD_163	purE	100	100	purE_29	sucA	100	100	sucA_207	thrA	100	100	thrA_86	30	i	l,w	Salmonella enterica subspecies enterica (subspecies I)	Soerenga		O	H1_fliC	H2_fljB	aadA2b	99.87	780/780	ABNSYB010000009.1 Salmonella enterica strain FDA1236853-C001-007 SAMN37734080-rid19667043.denovo.09, whole genome shotgun sequence	52780..53559	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	97.03	438/438	ABNSYB010000012.1 Salmonella enterica strain FDA1236853-C001-007 SAMN37734080-rid19667043.denovo.12, whole genome shotgun sequence	38280..38717	Amikacin, Tobramycin	NC_003197	aph(6)-Ic	100	801/801	ABNSYB010000037.1 Salmonella enterica strain FDA1236853-C001-007 SAMN37734080-rid19667043.denovo.43, whole genome shotgun sequence	699..1499	Streptomycin	X01702	aph(3')-IIa	100	795/795	ABNSYB010000037.1 Salmonella enterica strain FDA1236853-C001-007 SAMN37734080-rid19667043.denovo.43, whole genome shotgun sequence	1939..2733	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	aadA2b	99.87	780/780	ABNSYB010000059.1 Salmonella enterica strain FDA1236853-C001-007 SAMN37734080-rid19667043.guided.35, whole genome shotgun sequence	3319..4098	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	97.03	438/438	ABNSYB010000062.1 Salmonella enterica strain FDA1236853-C001-007 SAMN37734080-rid19667043.guided.39, whole genome shotgun sequence	3467..3904	Amikacin, Tobramycin	NC_003197	aph(6)-Ic	100	801/801	ABNSYB010000063.1 Salmonella enterica strain FDA1236853-C001-007 SAMN37734080-rid19667043.guided.42, whole genome shotgun sequence	1291..2091	Streptomycin	X01702	aph(3')-IIa	100	795/795	ABNSYB010000063.1 Salmonella enterica strain FDA1236853-C001-007 SAMN37734080-rid19667043.guided.42, whole genome shotgun sequence	57..851	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	lnu(G)	100	804/804	ABNSYB010000009.1 Salmonella enterica strain FDA1236853-C001-007 SAMN37734080-rid19667043.denovo.09, whole genome shotgun sequence	51602..52405	Lincomycin	KX470419	lnu(G)	100	804/804	ABNSYB010000059.1 Salmonella enterica strain FDA1236853-C001-007 SAMN37734080-rid19667043.guided.35, whole genome shotgun sequence	4473..5276	Lincomycin	KX470419	sul1	100	840/840	ABNSYB010000009.1 Salmonella enterica strain FDA1236853-C001-007 SAMN37734080-rid19667043.denovo.09, whole genome shotgun sequence	49259..50098	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSYB010000059.1 Salmonella enterica strain FDA1236853-C001-007 SAMN37734080-rid19667043.guided.35, whole genome shotgun sequence	6780..7619	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABNSYB010000034.1 Salmonella enterica strain FDA1236853-C001-007 SAMN37734080-rid19667043.denovo.38, whole genome shotgun sequence	1203..2408	Doxycycline, Tetracycline, Minocycline	AP000342	tet(B)	100	1206/1206	ABNSYB010000061.1 Salmonella enterica strain FDA1236853-C001-007 SAMN37734080-rid19667043.guided.37, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AP000342																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNSYB010000009.1 Salmonella enterica strain FDA1236853-C001-007 SAMN37734080-rid19667043.denovo.09, whole genome shotgun sequence	178832..179158	enterobacteriales	IncHI2A	100	630 / 630	ABNSYB010000009.1 Salmonella enterica strain FDA1236853-C001-007 SAMN37734080-rid19667043.denovo.09, whole genome shotgun sequence	163337..163966																																																avrA	ABNSYB010000001.1	95423..96292	99.655	870	0						
GCA_032631885.1_PDT001923764.1_genomic.fna	Salmonella_enterica	0.5184	248.943 KB	7	aroC_417,dnaN_216,hemD_8,hisD_163,purE_29,sucA_207,thrA_86	1659	30:i:l,w	7	aadA2b,aac(6')-Iaa,aph(6)-Ic,aph(3')-IIa,aac(6')-Iaa,aadA2b,aph(6)-Ic,aph(3')-IIa,lnu(G),lnu(G),sul1,sul1,tet(B),tet(B)	1	parC_p.T57S	2	IncHI2,IncHI2A	aroC	100	100	aroC_417	dnaN	100	100	dnaN_216	hemD	100	100	hemD_8	hisD	100	100	hisD_163	purE	100	100	purE_29	sucA	100	100	sucA_207	thrA	100	100	thrA_86	30	i	l,w	Salmonella enterica subspecies enterica (subspecies I)	Soerenga		O	H1_fliC	H2_fljB	aadA2b	99.87	780/780	ABNSYC010000009.1 Salmonella enterica strain FDA1236853-C001-003 SAMN37734082-rid19667023.denovo.09, whole genome shotgun sequence	52780..53559	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	97.03	438/438	ABNSYC010000013.1 Salmonella enterica strain FDA1236853-C001-003 SAMN37734082-rid19667023.denovo.13, whole genome shotgun sequence	38270..38707	Amikacin, Tobramycin	NC_003197	aph(6)-Ic	100	801/801	ABNSYC010000032.1 Salmonella enterica strain FDA1236853-C001-003 SAMN37734082-rid19667023.denovo.38, whole genome shotgun sequence	699..1499	Streptomycin	X01702	aph(3')-IIa	100	795/795	ABNSYC010000032.1 Salmonella enterica strain FDA1236853-C001-003 SAMN37734082-rid19667023.denovo.38, whole genome shotgun sequence	1939..2733	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	aac(6')-Iaa	97.03	438/438	ABNSYC010000054.1 Salmonella enterica strain FDA1236853-C001-003 SAMN37734082-rid19667023.guided.28, whole genome shotgun sequence	10378..10815	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNSYC010000057.1 Salmonella enterica strain FDA1236853-C001-003 SAMN37734082-rid19667023.guided.36, whole genome shotgun sequence	1041..1820	Spectinomycin, Streptomycin	D43625	aph(6)-Ic	100	801/801	ABNSYC010000059.1 Salmonella enterica strain FDA1236853-C001-003 SAMN37734082-rid19667023.guided.39, whole genome shotgun sequence	1291..2091	Streptomycin	X01702	aph(3')-IIa	100	795/795	ABNSYC010000059.1 Salmonella enterica strain FDA1236853-C001-003 SAMN37734082-rid19667023.guided.39, whole genome shotgun sequence	57..851	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	lnu(G)	100	804/804	ABNSYC010000009.1 Salmonella enterica strain FDA1236853-C001-003 SAMN37734082-rid19667023.denovo.09, whole genome shotgun sequence	51602..52405	Lincomycin	KX470419	lnu(G)	100	804/804	ABNSYC010000057.1 Salmonella enterica strain FDA1236853-C001-003 SAMN37734082-rid19667023.guided.36, whole genome shotgun sequence	2195..2998	Lincomycin	KX470419	sul1	100	840/840	ABNSYC010000009.1 Salmonella enterica strain FDA1236853-C001-003 SAMN37734082-rid19667023.denovo.09, whole genome shotgun sequence	49259..50098	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSYC010000058.1 Salmonella enterica strain FDA1236853-C001-003 SAMN37734082-rid19667023.guided.37, whole genome shotgun sequence	1193..2032	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABNSYC010000029.1 Salmonella enterica strain FDA1236853-C001-003 SAMN37734082-rid19667023.denovo.33, whole genome shotgun sequence	1203..2408	Doxycycline, Tetracycline, Minocycline	AP000342	tet(B)	100	1206/1206	ABNSYC010000056.1 Salmonella enterica strain FDA1236853-C001-003 SAMN37734082-rid19667023.guided.32, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AP000342																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNSYC010000009.1 Salmonella enterica strain FDA1236853-C001-003 SAMN37734082-rid19667023.denovo.09, whole genome shotgun sequence	178832..179158	enterobacteriales	IncHI2A	100	630 / 630	ABNSYC010000009.1 Salmonella enterica strain FDA1236853-C001-003 SAMN37734082-rid19667023.denovo.09, whole genome shotgun sequence	163337..163966																																																avrA	ABNSYC010000001.1	95423..96292	99.655	870	0						
GCA_032631925.1_PDT001923762.1_genomic.fna	Salmonella_enterica	0.5224	263.61 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSYE010000001.1 Salmonella enterica strain FDA1236853-C001-002 SAMN37734081-rid19667003.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNSYE010000044.1 Salmonella enterica strain FDA1236853-C001-002 SAMN37734081-rid19667003.guided.26, whole genome shotgun sequence	8080..8517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSYE010000002.1	149828..150697	99.655	870	0						
GCA_032631965.1_PDT001923761.1_genomic.fna	Salmonella_enterica	0.5225	263.61 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSYF010000001.1 Salmonella enterica strain FDA1236853-C001-009 SAMN37733914-rid19666993.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNSYF010000043.1 Salmonella enterica strain FDA1236853-C001-009 SAMN37733914-rid19666993.guided.20, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSYF010000002.1	149828..150697	99.655	870	0						
GCA_032631985.1_PDT001923759.1_genomic.fna	Salmonella_enterica	0.5215	358.936 KB	5	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNSYH010000004.1 Salmonella enterica strain FDA1236853-C001-008 SAMN37734075-rid19666973.denovo.04, whole genome shotgun sequence	402023..402460	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNSYH010000036.1 Salmonella enterica strain FDA1236853-C001-008 SAMN37734075-rid19666973.guided.28, whole genome shotgun sequence	260..697	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSYH010000002.1	183910..184779	99.54	870	0						
GCA_032632005.1_PDT001923756.1_genomic.fna	Salmonella_enterica	0.5196	399.597 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNSYK010000001.1 Salmonella enterica strain FDA1199253-S004-019 SAMN37733631-rid19666943.denovo.01, whole genome shotgun sequence	498158..498595	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNSYK010000030.1 Salmonella enterica strain FDA1199253-S004-019 SAMN37733631-rid19666943.guided.19, whole genome shotgun sequence	27732..28169	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSYK010000002.1	544714..545582	99.425	870	0						
GCA_032632125.1_PDT001923758.1_genomic.fna	Salmonella_enterica	0.5184	248.943 KB	7	aroC_417,dnaN_216,hemD_8,hisD_163,purE_29,sucA_207,thrA_86	1659	30:i:l,w	7	aadA2b,aac(6')-Iaa,aph(6)-Ic,aph(3')-IIa,aac(6')-Iaa,aadA2b,aph(6)-Ic,aph(3')-IIa,lnu(G),lnu(G),sul1,sul1,tet(B),tet(B)	1	parC_p.T57S	2	IncHI2,IncHI2A	aroC	100	100	aroC_417	dnaN	100	100	dnaN_216	hemD	100	100	hemD_8	hisD	100	100	hisD_163	purE	100	100	purE_29	sucA	100	100	sucA_207	thrA	100	100	thrA_86	30	i	l,w	Salmonella enterica subspecies enterica (subspecies I)	Soerenga		O	H1_fliC	H2_fljB	aadA2b	99.87	780/780	ABNSYI010000009.1 Salmonella enterica strain FDA1236853-C001-001 SAMN37734074-rid19666963.denovo.09, whole genome shotgun sequence	52780..53559	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	97.03	438/438	ABNSYI010000013.1 Salmonella enterica strain FDA1236853-C001-001 SAMN37734074-rid19666963.denovo.13, whole genome shotgun sequence	38280..38717	Amikacin, Tobramycin	NC_003197	aph(6)-Ic	100	801/801	ABNSYI010000033.1 Salmonella enterica strain FDA1236853-C001-001 SAMN37734074-rid19666963.denovo.39, whole genome shotgun sequence	699..1499	Streptomycin	X01702	aph(3')-IIa	100	795/795	ABNSYI010000033.1 Salmonella enterica strain FDA1236853-C001-001 SAMN37734074-rid19666963.denovo.39, whole genome shotgun sequence	1939..2733	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	aac(6')-Iaa	97.03	438/438	ABNSYI010000055.1 Salmonella enterica strain FDA1236853-C001-001 SAMN37734074-rid19666963.guided.25, whole genome shotgun sequence	16433..16870	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNSYI010000057.1 Salmonella enterica strain FDA1236853-C001-001 SAMN37734074-rid19666963.guided.31, whole genome shotgun sequence	3319..4098	Spectinomycin, Streptomycin	D43625	aph(6)-Ic	100	801/801	ABNSYI010000060.1 Salmonella enterica strain FDA1236853-C001-001 SAMN37734074-rid19666963.guided.38, whole genome shotgun sequence	1291..2091	Streptomycin	X01702	aph(3')-IIa	100	795/795	ABNSYI010000060.1 Salmonella enterica strain FDA1236853-C001-001 SAMN37734074-rid19666963.guided.38, whole genome shotgun sequence	57..851	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	lnu(G)	100	804/804	ABNSYI010000009.1 Salmonella enterica strain FDA1236853-C001-001 SAMN37734074-rid19666963.denovo.09, whole genome shotgun sequence	51602..52405	Lincomycin	KX470419	lnu(G)	100	804/804	ABNSYI010000057.1 Salmonella enterica strain FDA1236853-C001-001 SAMN37734074-rid19666963.guided.31, whole genome shotgun sequence	4473..5276	Lincomycin	KX470419	sul1	100	840/840	ABNSYI010000009.1 Salmonella enterica strain FDA1236853-C001-001 SAMN37734074-rid19666963.denovo.09, whole genome shotgun sequence	49259..50098	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSYI010000057.1 Salmonella enterica strain FDA1236853-C001-001 SAMN37734074-rid19666963.guided.31, whole genome shotgun sequence	6780..7619	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABNSYI010000031.1 Salmonella enterica strain FDA1236853-C001-001 SAMN37734074-rid19666963.denovo.36, whole genome shotgun sequence	1201..2406	Doxycycline, Tetracycline, Minocycline	AP000342	tet(B)	100	1206/1206	ABNSYI010000059.1 Salmonella enterica strain FDA1236853-C001-001 SAMN37734074-rid19666963.guided.35, whole genome shotgun sequence	1222..2427	Doxycycline, Tetracycline, Minocycline	AP000342																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNSYI010000009.1 Salmonella enterica strain FDA1236853-C001-001 SAMN37734074-rid19666963.denovo.09, whole genome shotgun sequence	178832..179158	enterobacteriales	IncHI2A	100	630 / 630	ABNSYI010000009.1 Salmonella enterica strain FDA1236853-C001-001 SAMN37734074-rid19666963.denovo.09, whole genome shotgun sequence	163337..163966																																																avrA	ABNSYI010000001.1	95423..96292	99.655	870	0						
GCA_032632185.1_PDT001926203.1_genomic.fna	Salmonella_enterica	0.5222	263.453 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSYT010000001.1 Salmonella enterica strain PNUSAS390336 SAMN37803619-rid19696713.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNSYT010000039.1 Salmonella enterica strain PNUSAS390336 SAMN37803619-rid19696713.guided.22, whole genome shotgun sequence	36789..37226	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSYT010000005.1	149828..150697	99.655	870	0						
GCA_032632245.1_PDT001926197.1_genomic.fna	Salmonella_enterica	0.5215	799.516 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNSYU010000003.1 Salmonella enterica strain PNUSAS390166 SAMN37803613-rid19695783.denovo.03, whole genome shotgun sequence	395389..395826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNSYU010000017.1 Salmonella enterica strain PNUSAS390166 SAMN37803613-rid19695783.guided.09, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSYU010000004.1	561474..562344	99.656	871	0						
GCA_032632265.1_PDT001926196.1_genomic.fna	Salmonella_enterica	0.5195	396.374 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNSYW010000001.1 Salmonella enterica strain FDA1199253-S001-006 SAMN37803641-rid19694343.denovo.01, whole genome shotgun sequence	498158..498595	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNSYW010000028.1 Salmonella enterica strain FDA1199253-S001-006 SAMN37803641-rid19694343.guided.20, whole genome shotgun sequence	6267..6704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSYW010000002.1	544714..545582	99.425	870	0						
GCA_032632285.1_PDT001926198.1_genomic.fna	Salmonella_enterica	0.5204	394.514 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNSYV010000001.1 Salmonella enterica strain FDA1197180-S002-005 SAMN37803695-rid19696703.denovo.01, whole genome shotgun sequence	486830..487267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNSYV010000032.1 Salmonella enterica strain FDA1197180-S002-005 SAMN37803695-rid19696703.guided.24, whole genome shotgun sequence	9227..9664	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSYV010000002.1	544456..545324	99.425	870	0						
GCA_032632305.1_PDT001926189.1_genomic.fna	Salmonella_enterica	0.5227	658.752 KB	2	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSYX010000001.1 Salmonella enterica strain FDA1234226-S010-024 SAMN37803657-rid19694303.denovo.01, whole genome shotgun sequence	677335..677772	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSYX010000017.1 Salmonella enterica strain FDA1234226-S010-024 SAMN37803657-rid19694303.guided.13, whole genome shotgun sequence	12270..12707	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032632325.1_PDT001926179.1_genomic.fna	Salmonella_enterica	0.52	633.846 KB	3	aroC_11,dnaN_10,hemD_25,hisD_42,purE_40,sucA_13,thrA_4	411	4:e,h:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSYZ010000001.1 Salmonella enterica strain PNUSAS390338 SAMN37803570-rid19694253.denovo.01, whole genome shotgun sequence	623465..623902	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSYZ010000023.1 Salmonella enterica strain PNUSAS390338 SAMN37803570-rid19694253.guided.17, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSYZ010000003.1	94145..95014	99.54	870	0						
GCA_032632345.1_PDT001926178.1_genomic.fna	Salmonella_enterica	0.5221	416.594 KB	4	aroC_43,dnaN_41,hemD_16,hisD_21,purE_34,sucA_13,thrA_4	699	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_21	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSYY010000002.1 Salmonella enterica strain PNUSAS389991 SAMN37803698-rid19696663.denovo.02, whole genome shotgun sequence	153903..154340	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSYY010000029.1 Salmonella enterica strain PNUSAS389991 SAMN37803698-rid19696663.guided.17, whole genome shotgun sequence	36797..37234	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032632365.1_PDT001926177.1_genomic.fna	Salmonella_enterica	0.5215	731.66 KB	2	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSZA010000001.1 Salmonella enterica strain PNUSAS389986 SAMN37803704-rid19695723.denovo.01, whole genome shotgun sequence	624509..624946	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSZA010000016.1 Salmonella enterica strain PNUSAS389986 SAMN37803704-rid19695723.guided.10, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNSZA010000013.1 Salmonella enterica strain PNUSAS389986 SAMN37803704-rid19695723.denovo.16, whole genome shotgun sequence	358..488																																																																	
GCA_032632385.1_PDT001926176.1_genomic.fna	Salmonella_enterica	0.5219	210.685 KB	8	aroC_41,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	2129	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSZB010000002.1 Salmonella enterica strain PNUSAS389984 SAMN37803700-rid19694243.denovo.02, whole genome shotgun sequence	370686..371123	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSZB010000048.1 Salmonella enterica strain PNUSAS389984 SAMN37803700-rid19694243.guided.32, whole genome shotgun sequence	20570..21007	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032632405.1_PDT001926174.1_genomic.fna	Salmonella_enterica	0.5205	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	4	aac(6')-Iaa,aac(6')-Iaa,catA1,catA1,sul1,sul1,dfrA7,dfrA7	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNSZD010000012.1 Salmonella enterica strain PNUSAS389982 SAMN37803701-rid19694233.denovo.12, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNSZD010000056.1 Salmonella enterica strain PNUSAS389982 SAMN37803701-rid19694233.guided.30, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	catA1	99.85	660/660	ABNSZD010000037.1 Salmonella enterica strain PNUSAS389982 SAMN37803701-rid19694233.denovo.38, whole genome shotgun sequence	16319..16978	Chloramphenicol	V00622	catA1	99.85	660/660	ABNSZD010000058.1 Salmonella enterica strain PNUSAS389982 SAMN37803701-rid19694233.guided.40, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	ABNSZD010000037.1 Salmonella enterica strain PNUSAS389982 SAMN37803701-rid19694233.denovo.38, whole genome shotgun sequence	8412..9251	Sulfamethoxazole	U12338	sul1	100	840/840	ABNSZD010000058.1 Salmonella enterica strain PNUSAS389982 SAMN37803701-rid19694233.guided.40, whole genome shotgun sequence	7991..8830	Sulfamethoxazole	U12338	dfrA7	100	474/474	ABNSZD010000037.1 Salmonella enterica strain PNUSAS389982 SAMN37803701-rid19694233.denovo.38, whole genome shotgun sequence	9822..10295	Trimethoprim	AB161450	dfrA7	100	474/474	ABNSZD010000058.1 Salmonella enterica strain PNUSAS389982 SAMN37803701-rid19694233.guided.40, whole genome shotgun sequence	6947..7420	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																																																																																gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032632425.1_PDT001926175.1_genomic.fna	Salmonella_enterica	0.5218	682.831 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNSZC010000001.1 Salmonella enterica strain PNUSAS389988 SAMN37803706-rid19695713.denovo.01, whole genome shotgun sequence	398810..399247	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNSZC010000027.1 Salmonella enterica strain PNUSAS389988 SAMN37803706-rid19695713.guided.20, whole genome shotgun sequence	1876..2313	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSZC010000002.1	544607..545475	99.425	870	0						
GCA_032632445.1_PDT001926173.1_genomic.fna	Salmonella_enterica	0.5207	254.682 KB	7	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNSZF010000009.1 Salmonella enterica strain PNUSAS389987 SAMN37803703-rid19696653.denovo.09, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNSZF010000043.1 Salmonella enterica strain PNUSAS389987 SAMN37803703-rid19696653.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSZF010000001.1	178442..179310	99.31	870	0						
GCA_032632465.1_PDT001926172.1_genomic.fna	Salmonella_enterica	0.5208	394.33 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI(Gamma)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNSZE010000001.1 Salmonella enterica strain PNUSAS389985 SAMN37803699-rid19694223.denovo.01, whole genome shotgun sequence	527904..528341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNSZE010000030.1 Salmonella enterica strain PNUSAS389985 SAMN37803699-rid19694223.guided.18, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI(Gamma)	97.81	137 / 141	ABNSZE010000013.1 Salmonella enterica strain PNUSAS389985 SAMN37803699-rid19694223.denovo.13, whole genome shotgun sequence	66707..66843																																																						avrA	ABNSZE010000002.1	145182..146051	99.31	870	0						
GCA_032632485.1_PDT001926170.1_genomic.fna	Salmonella_enterica	0.5203	397.306 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNSZI010000001.1 Salmonella enterica strain FDA1197180-S002-007 SAMN37803654-rid19695703.denovo.01, whole genome shotgun sequence	486831..487268	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNSZI010000036.1 Salmonella enterica strain FDA1197180-S002-007 SAMN37803654-rid19695703.guided.23, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSZI010000002.1	544456..545324	99.425	870	0						
GCA_032632525.1_PDT001926169.1_genomic.fna	Salmonella_enterica	0.5206	475.845 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNSZJ010000001.1 Salmonella enterica strain FDA1197180-S002-004 SAMN37803655-rid19694203.denovo.01, whole genome shotgun sequence	486830..487267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNSZJ010000031.1 Salmonella enterica strain FDA1197180-S002-004 SAMN37803655-rid19694203.guided.24, whole genome shotgun sequence	3204..3641	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSZJ010000002.1	544456..545324	99.425	870	0						
GCA_032632585.1_PDT001926165.1_genomic.fna	Salmonella_enterica	0.5205	364.306 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNSZL010000001.1 Salmonella enterica strain FDA1197180-S002-006 SAMN37803640-rid19695683.denovo.01, whole genome shotgun sequence	510464..510901	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNSZL010000032.1 Salmonella enterica strain FDA1197180-S002-006 SAMN37803640-rid19695683.guided.24, whole genome shotgun sequence	8828..9265	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSZL010000002.1	544456..545324	99.425	870	0						
GCA_032632605.1_PDT001926163.1_genomic.fna	Salmonella_enterica	0.522	343.993 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSZN010000001.1 Salmonella enterica strain FDA1197180-S002-010 SAMN37803620-rid19695673.denovo.01, whole genome shotgun sequence	477371..477808	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSZN010000035.1 Salmonella enterica strain FDA1197180-S002-010 SAMN37803620-rid19695673.guided.27, whole genome shotgun sequence	3957..4394	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNSZN010000026.1 Salmonella enterica strain FDA1197180-S002-010 SAMN37803620-rid19695673.denovo.29, whole genome shotgun sequence	3981..4111																																																						avrA	ABNSZN010000014.1	93870..94738	99.195	870	0						
GCA_032632625.1_PDT001926164.1_genomic.fna	Salmonella_enterica	0.5219	344.033 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSZM010000001.1 Salmonella enterica strain FDA1197180-S004-002 SAMN37803621-rid19694193.denovo.01, whole genome shotgun sequence	477371..477808	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSZM010000034.1 Salmonella enterica strain FDA1197180-S004-002 SAMN37803621-rid19694193.guided.28, whole genome shotgun sequence	3197..3634	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNSZM010000028.1 Salmonella enterica strain FDA1197180-S004-002 SAMN37803621-rid19694193.denovo.30, whole genome shotgun sequence	3981..4111																																																						avrA	ABNSZM010000014.1	93876..94744	99.195	870	0						
GCA_032632645.1_PDT001926161.1_genomic.fna	Salmonella_enterica	0.5204	398.939 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNSZP010000001.1 Salmonella enterica strain FDA1197180-S002-009 SAMN37803601-rid19695663.denovo.01, whole genome shotgun sequence	486830..487267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNSZP010000031.1 Salmonella enterica strain FDA1197180-S002-009 SAMN37803601-rid19695663.guided.25, whole genome shotgun sequence	1240..1677	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSZP010000002.1	544456..545324	99.425	870	0						
GCA_032632705.1_PDT001926158.1_genomic.fna	Salmonella_enterica	0.5205	394.001 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	-	Salmonella enterica subspecies enterica (subspecies I)	I 9:l,z28:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNSZR010000001.1 Salmonella enterica strain PNUSAS390335 SAMN37803617-rid19696623.denovo.01, whole genome shotgun sequence	400163..400600	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNSZR010000031.1 Salmonella enterica strain PNUSAS390335 SAMN37803617-rid19696623.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSZR010000004.1	146851..147719	99.425	870	0						
GCA_032632745.1_PDT001926153.1_genomic.fna	Salmonella_enterica	0.5204	394.514 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNSZU010000001.1 Salmonella enterica strain FDA1197180-S002-008 SAMN37803598-rid19695633.denovo.01, whole genome shotgun sequence	486827..487264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNSZU010000033.1 Salmonella enterica strain FDA1197180-S002-008 SAMN37803598-rid19695633.guided.23, whole genome shotgun sequence	857..1294	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSZU010000002.1	544456..545324	99.425	870	0						
GCA_032632785.1_PDT001926150.1_genomic.fna	Salmonella_enterica	0.5203	345.029 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNSZV010000001.1 Salmonella enterica strain PNUSAS390340 SAMN37803572-rid19695613.denovo.01, whole genome shotgun sequence	560095..560532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNSZV010000035.1 Salmonella enterica strain PNUSAS390340 SAMN37803572-rid19695613.guided.22, whole genome shotgun sequence	21771..22208	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSZV010000013.1	93870..94738	99.195	870	0						
GCA_032632845.1_PDT001926140.1_genomic.fna	Salmonella_enterica	0.5223	366.899 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNTAA010000003.1 Salmonella enterica strain PNUSAS390330 SAMN37803553-rid19695583.denovo.03, whole genome shotgun sequence	422511..422948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNTAA010000032.1 Salmonella enterica strain PNUSAS390330 SAMN37803553-rid19695583.guided.22, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTAA010000002.1	22186..23055	98.966	870	0						
GCA_032632865.1_PDT001926144.1_genomic.fna	Salmonella_enterica	0.5219	296.975 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNSZZ010000001.1 Salmonella enterica strain PNUSAS390328 SAMN37803555-rid19694133.denovo.01, whole genome shotgun sequence	170684..171121	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNSZZ010000033.1 Salmonella enterica strain PNUSAS390328 SAMN37803555-rid19694133.guided.19, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSZZ010000003.1	360434..361303	99.31	870	0						
GCA_032632885.1_PDT001926146.1_genomic.fna	Salmonella_enterica	0.5224	443.904 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNSZY010000001.1 Salmonella enterica strain PNUSAS390331 SAMN37803554-rid19696593.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNSZY010000031.1 Salmonella enterica strain PNUSAS390331 SAMN37803554-rid19696593.guided.21, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNSZY010000002.1	183135..184004	98.966	870	0						
GCA_032633525.1_PDT001923730.1_genomic.fna	Salmonella_enterica	0.5172	223.575 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	21	aac(6')-Iaa,aph(4)-Ia,aph(3')-Ia,aac(3)-IV,aadA2b,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aadA1,aadA1,aadA1,aadA1,aadA1,aph(6)-Id,aph(6)-Id,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aadA1,aadA1,aadA1,aadA1,aadA1,aadA1,aadA22,aadA1,aadA2b,blaNDM-5,blaOXA-10,blaNDM-5,blaOXA-10,blaOXA-10,blaOXA-10,blaTEM-1B,lnu(F),lnu(F),floR,floR,floR,floR,cmlA1,cmlA1,cmlA1,cmlA1,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul3,sul2,sul2,sul2,sul2,tet(A),tet(A),tet(A),tet(A),dfrA14,dfrA14	0		7	Col(pHAD28),Col440I,IncHI2,IncHI2A,IncI2(Delta),IncQ1,p0111	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQDXQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.001, whole genome shotgun sequence	569880..570317	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	DAQDXQ010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.049, whole genome shotgun sequence	1053..2078	Hygromycin	V01499	aph(3')-Ia	99.88	816/816	DAQDXQ010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.049, whole genome shotgun sequence	5936..6751	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EF015636	aac(3)-IV	100	777/777	DAQDXQ010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.049, whole genome shotgun sequence	48..824	Gentamicin, Tobramycin	DQ241380	aadA2b	99.87	780/780	DAQDXQ010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.092, whole genome shotgun sequence	738..1517	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	DAQDXQ010000137.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.025, whole genome shotgun sequence	31309..31746	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	DAQDXQ010000142.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.058, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	DAQDXQ010000142.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.058, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	99.88	816/816	DAQDXQ010000147.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.082, whole genome shotgun sequence	148..963	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EF015636	aadA1	99.87	792/792	DAQDXQ010000152.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.087, whole genome shotgun sequence	1036..1827	Spectinomycin, Streptomycin	JQ414041	aadA1	99.49	792/792	DAQDXQ010000153.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.088, whole genome shotgun sequence	1036..1827	Spectinomycin, Streptomycin	JX185132	aadA1	99.49	792/792	DAQDXQ010000153.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.088, whole genome shotgun sequence	1036..1827	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	DAQDXQ010000154.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.089, whole genome shotgun sequence	1036..1827	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	DAQDXQ010000154.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.089, whole genome shotgun sequence	1036..1827	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	99.88	837/837	DAQDXQ010000162.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.107, whole genome shotgun sequence	303..1139	Streptomycin	M28829	aph(6)-Id	100	831/831	DAQDXQ010000163.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.108, whole genome shotgun sequence	309..1139	Streptomycin	CP000971	aph(6)-Id	100	837/837	DAQDXQ010000164.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.109, whole genome shotgun sequence	303..1139	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQDXQ010000170.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.117, whole genome shotgun sequence	14..817	Streptomycin	AF321551	aph(3'')-Ib	100	804/804	DAQDXQ010000171.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.118, whole genome shotgun sequence	14..817	Streptomycin	AF321551	aph(3'')-Ib	100	803/804	DAQDXQ010000172.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.119, whole genome shotgun sequence	15..817	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAQDXQ010000172.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.119, whole genome shotgun sequence	14..817	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAQDXQ010000172.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.119, whole genome shotgun sequence	14..817	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAQDXQ010000172.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.119, whole genome shotgun sequence	14..817	Streptomycin	AF321550	aadA1	100	792/792	DAQDXQ010000173.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.120, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	JQ414041	aadA1	99.62	792/792	DAQDXQ010000174.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.121, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	JX185132	aadA1	99.62	792/792	DAQDXQ010000174.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.121, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	JQ414041	aadA1	99.87	792/792	DAQDXQ010000175.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.122, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	DAQDXQ010000175.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.122, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	DAQDXQ010000176.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.127, whole genome shotgun sequence	11..802	Spectinomycin, Streptomycin	FJ591054	aadA22	100	792/792	DAQDXQ010000177.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.128, whole genome shotgun sequence	11..802	Spectinomycin, Streptomycin	AM261837	aadA1	99.87	792/792	DAQDXQ010000178.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.129, whole genome shotgun sequence	11..802	Spectinomycin, Streptomycin	FJ591054	aadA2b	99.87	780/780	DAQDXQ010000179.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.130, whole genome shotgun sequence	23..802	Spectinomycin, Streptomycin	D43625	blaNDM-5	100	813/813	DAQDXQ010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.061, whole genome shotgun sequence	2187..2999	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam, Temocillin	JN104597	blaOXA-10	100	801/801	DAQDXQ010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.095, whole genome shotgun sequence	522..1322	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaNDM-5	100	813/813	DAQDXQ010000143.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.059, whole genome shotgun sequence	1750..2562	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam, Temocillin	JN104597	blaOXA-10	100	801/801	DAQDXQ010000152.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.087, whole genome shotgun sequence	219..1019	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaOXA-10	100	801/801	DAQDXQ010000153.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.088, whole genome shotgun sequence	219..1019	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaOXA-10	100	801/801	DAQDXQ010000154.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.089, whole genome shotgun sequence	219..1019	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaTEM-1B	100	861/861	DAQDXQ010000161.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.106, whole genome shotgun sequence	144..1004	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	lnu(F)	99.88	822/822	DAQDXQ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.110, whole genome shotgun sequence	174..995	Lincomycin	EU118119	lnu(F)	99.88	822/822	DAQDXQ010000165.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.112, whole genome shotgun sequence	114..935	Lincomycin	EU118119	floR	98.11	1214/1215	DAQDXQ010000148.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.083, whole genome shotgun sequence	476..1689	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	DAQDXQ010000149.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.084, whole genome shotgun sequence	476..1689	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	DAQDXQ010000150.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.085, whole genome shotgun sequence	476..1689	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	DAQDXQ010000151.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.086, whole genome shotgun sequence	476..1689	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.76	1260/1260	DAQDXQ010000157.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.098, whole genome shotgun sequence	38..1297	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	DAQDXQ010000158.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.099, whole genome shotgun sequence	38..1297	Chloramphenicol	M64556	cmlA1	99.68	1260/1260	DAQDXQ010000159.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.100, whole genome shotgun sequence	38..1297	Chloramphenicol	M64556	cmlA1	99.84	1260/1260	DAQDXQ010000160.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.101, whole genome shotgun sequence	38..1297	Chloramphenicol	M64556	qnrS1	100	657/657	DAQDXQ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.056, whole genome shotgun sequence	3598..4254	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQDXQ010000141.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.055, whole genome shotgun sequence	1054..1710	Ciprofloxacin	AB187515	ARR-2	100	453/453	DAQDXQ010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.133, whole genome shotgun sequence	34..486	Rifampicin	HQ141279	ARR-2	100	453/453	DAQDXQ010000180.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.139, whole genome shotgun sequence	74..526	Rifampicin	HQ141279	sul3	100	792/792	DAQDXQ010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.062, whole genome shotgun sequence	1751..2542	Sulfamethoxazole	AJ459418	sul3	100	792/792	DAQDXQ010000144.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.063, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	sul2	100	816/816	DAQDXQ010000166.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.113, whole genome shotgun sequence	196..1011	Sulfamethoxazole	HQ840942	sul2	100	816/816	DAQDXQ010000167.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.114, whole genome shotgun sequence	196..1011	Sulfamethoxazole	FN995456	sul2	99.88	816/816	DAQDXQ010000168.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.115, whole genome shotgun sequence	196..1011	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQDXQ010000169.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.116, whole genome shotgun sequence	196..1011	Sulfamethoxazole	AY034138	tet(A)	99.92	1200/1200	DAQDXQ010000145.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.064, whole genome shotgun sequence	650..1849	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQDXQ010000146.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.065, whole genome shotgun sequence	650..1849	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1275/1275	DAQDXQ010000155.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.090, whole genome shotgun sequence	575..1849	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	DAQDXQ010000156.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.091, whole genome shotgun sequence	575..1849	Doxycycline, Tetracycline	AF534183	dfrA14	100	458/474	DAQDXQ010000112.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.157, whole genome shotgun sequence	1..458	Trimethoprim	KF921535	dfrA14	100	474/474	DAQDXQ010000181.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.guided.153, whole genome shotgun sequence	21..494	Trimethoprim	KF921535																					enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQDXQ010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.068, whole genome shotgun sequence	712..842	enterobacteriales	Col440I	94.59	111 / 114	DAQDXQ010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.076, whole genome shotgun sequence	753..863		enterobacteriales	IncHI2	100	327 / 327	DAQDXQ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.009, whole genome shotgun sequence	70366..70692		enterobacteriales	IncHI2A	99.52	630 / 630	DAQDXQ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.009, whole genome shotgun sequence	85560..86189		enterobacteriales	IncI2(Delta)	98.42	316 / 316	DAQDXQ010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.023, whole genome shotgun sequence	31073..31388		enterobacteriales	IncQ1	100	796 / 796	DAQDXQ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.052, whole genome shotgun sequence	3835..4630		enterobacteriales	p0111	98.64	885 / 885	DAQDXQ010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain 2023JX045 isolate 2023JX045SAL SAMN37177606-rid19666693.denovo.045, whole genome shotgun sequence	2935..3819													avrA	DAQDXQ010000002.1	620353..621222	99.885	870	0						
GCA_032633555.1_PDT001923728.1_genomic.fna	Salmonella_enterica	0.52	369.182 KB	5	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	15	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,aph(3')-Ia,blaCMY-2,blaCMY-2,fosA7,fosA7,floR,floR,qnrB19,qnrB19,sul2,sul1,sul2,sul1,tet(A),tet(O),tet(B),tet(A),tet(O),tet(B),dfrA34,dfrA34	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQDXT010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.03, whole genome shotgun sequence	147544..147981	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDXT010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.20, whole genome shotgun sequence	59113..59949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDXT010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.20, whole genome shotgun sequence	58310..59113	Streptomycin	AF321551	aadA1	90.67	772/792	DAQDXT010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.28, whole genome shotgun sequence	7532..8303	Spectinomycin, Streptomycin	FJ591054	aph(3')-Ia	99.75	816/816	DAQDXT010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.43, whole genome shotgun sequence	1035..1850	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EU855787	aac(6')-Iaa	97.26	438/438	DAQDXT010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.guided.16, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDXT010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.guided.22, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDXT010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.guided.22, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aadA1	90.67	772/792	DAQDXT010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.guided.27, whole genome shotgun sequence	4197..4968	Spectinomycin, Streptomycin	FJ591054	aph(3')-Ia	99.75	816/816	DAQDXT010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.guided.42, whole genome shotgun sequence	106..921	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EU855787	blaCMY-2	100	1146/1146	DAQDXT010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.20, whole genome shotgun sequence	27948..29093	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	DAQDXT010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.guided.22, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	fosA7	100	423/423	DAQDXT010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.05, whole genome shotgun sequence	143756..144178	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQDXT010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.guided.21, whole genome shotgun sequence	52511..52933	Fosfomycin	LAPJ01000014	floR	98	1052/1215	DAQDXT010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.20, whole genome shotgun sequence	63085..64136	Chloramphenicol, Florfenicol	AF118107	floR	97.92	1059/1215	DAQDXT010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.guided.44, whole genome shotgun sequence	35..1093	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	DAQDXT010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.39, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	DAQDXT010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.guided.38, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	DAQDXT010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.20, whole genome shotgun sequence	57434..58249	Sulfamethoxazole	AY034138	sul1	100	840/840	DAQDXT010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.28, whole genome shotgun sequence	4241..5080	Sulfamethoxazole	U12338	sul2	100	816/816	DAQDXT010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.guided.22, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	sul1	100	840/840	DAQDXT010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.guided.27, whole genome shotgun sequence	7420..8259	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	DAQDXT010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.20, whole genome shotgun sequence	61210..62484	Doxycycline, Tetracycline	AF534183	tet(O)	99.48	1920/1920	DAQDXT010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.31, whole genome shotgun sequence	7087..9006	Doxycycline, Tetracycline, Minocycline	M18896	tet(B)	99.92	1206/1206	DAQDXT010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.32, whole genome shotgun sequence	4642..5847	Doxycycline, Tetracycline, Minocycline	AP000342	tet(A)	100	1275/1275	DAQDXT010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.guided.22, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183	tet(O)	99.48	1920/1920	DAQDXT010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.guided.30, whole genome shotgun sequence	7128..9047	Doxycycline, Tetracycline, Minocycline	M18896	tet(B)	99.92	1206/1206	DAQDXT010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.guided.34, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AP000342	dfrA34	100	588/588	DAQDXT010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.28, whole genome shotgun sequence	1468..2055	Trimethoprim	JYRF01000065	dfrA34	100	588/588	DAQDXT010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.guided.27, whole genome shotgun sequence	10445..11032	Trimethoprim	JYRF01000065																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	DAQDXT010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.39, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	DAQDXT010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.guided.38, whole genome shotgun sequence	2416..2546		enterobacteriales	IncC	99.76	417 / 417	DAQDXT010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 245 SAMN36730862-rid19666683.denovo.23, whole genome shotgun sequence	18807..19223																																									avrA	DAQDXT010000001.1	564681..565550	99.54	870	0						
GCA_032633585.1_PDT001923729.1_genomic.fna	Salmonella_enterica	0.5199	381.099 KB	5	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	15	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA1,aph(3')-Ia,blaCMY-2,blaCMY-2,fosA7,fosA7,floR,floR,qnrB19,qnrB19,sul2,sul1,sul2,sul1,tet(A),tet(O),tet(B),tet(A),tet(B),tet(O),dfrA34,dfrA34	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),IncC,IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQDXR010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.03, whole genome shotgun sequence	147544..147981	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQDXR010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.18, whole genome shotgun sequence	59124..59960	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDXR010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.18, whole genome shotgun sequence	58321..59124	Streptomycin	AF321551	aadA1	90.67	772/792	DAQDXR010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.29, whole genome shotgun sequence	7532..8303	Spectinomycin, Streptomycin	FJ591054	aph(3')-Ia	99.75	816/816	DAQDXR010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.42, whole genome shotgun sequence	1035..1850	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU855787	aph(6)-Id	100	837/837	DAQDXR010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.guided.20, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQDXR010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.guided.20, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	97.26	438/438	DAQDXR010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.guided.25, whole genome shotgun sequence	10249..10686	Amikacin, Tobramycin	NC_003197	aadA1	90.67	772/792	DAQDXR010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.guided.28, whole genome shotgun sequence	4197..4968	Spectinomycin, Streptomycin	FJ591054	aph(3')-Ia	99.75	816/816	DAQDXR010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.guided.41, whole genome shotgun sequence	106..921	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU855787	blaCMY-2	100	1146/1146	DAQDXR010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.18, whole genome shotgun sequence	27959..29104	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	DAQDXR010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.guided.20, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	fosA7	100	423/423	DAQDXR010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.05, whole genome shotgun sequence	143756..144178	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQDXR010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.guided.24, whole genome shotgun sequence	16807..17229	Fosfomycin	LAPJ01000014	floR	98.27	1214/1215	DAQDXR010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.18, whole genome shotgun sequence	63096..64309	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	DAQDXR010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.guided.37, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	DAQDXR010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.39, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	DAQDXR010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.guided.38, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	DAQDXR010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.18, whole genome shotgun sequence	57445..58260	Sulfamethoxazole	AY034138	sul1	100	840/840	DAQDXR010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.29, whole genome shotgun sequence	4241..5080	Sulfamethoxazole	U12338	sul2	100	816/816	DAQDXR010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.guided.20, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	sul1	100	840/840	DAQDXR010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.guided.28, whole genome shotgun sequence	7420..8259	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	DAQDXR010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.18, whole genome shotgun sequence	61221..62495	Doxycycline, Tetracycline	AF534183	tet(O)	99.48	1920/1920	DAQDXR010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.30, whole genome shotgun sequence	7090..9009	Doxycycline, Tetracycline, Minocycline	M18896	tet(B)	99.92	1206/1206	DAQDXR010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.33, whole genome shotgun sequence	4280..5485	Doxycycline, Tetracycline, Minocycline	AP000342	tet(A)	100	1275/1275	DAQDXR010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.guided.20, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183	tet(B)	99.92	1206/1206	DAQDXR010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.guided.32, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AP000342	tet(O)	99.48	1920/1920	DAQDXR010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.guided.34, whole genome shotgun sequence	5423..7342	Doxycycline, Tetracycline, Minocycline	M18896	dfrA34	100	588/588	DAQDXR010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.29, whole genome shotgun sequence	1468..2055	Trimethoprim	JYRF01000065	dfrA34	100	588/588	DAQDXR010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.guided.28, whole genome shotgun sequence	10445..11032	Trimethoprim	JYRF01000065																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	DAQDXR010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.39, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	DAQDXR010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.guided.38, whole genome shotgun sequence	2416..2546		enterobacteriales	IncC	99.76	417 / 417	DAQDXR010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.21, whole genome shotgun sequence	18807..19223		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQDXR010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg strain SX 244 SAMN36730861-rid19665973.denovo.16, whole genome shotgun sequence	32298..32439																																		avrA	DAQDXR010000001.1	564681..565550	99.54	870	0						
GCA_032634165.1_PDT001926194.1_genomic.fna	Salmonella_enterica	0.522	366.958 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTBG010000001.1 Salmonella enterica strain FDA1197180-S004-003 SAMN37803603-rid19694333.denovo.01, whole genome shotgun sequence	512518..512955	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTBG010000033.1 Salmonella enterica strain FDA1197180-S004-003 SAMN37803603-rid19694333.guided.27, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNTBG010000025.1 Salmonella enterica strain FDA1197180-S004-003 SAMN37803603-rid19694333.denovo.28, whole genome shotgun sequence	3981..4111																																																						avrA	ABNTBG010000010.1	175891..176759	99.195	870	0						
GCA_032634205.1_PDT001926184.1_genomic.fna	Salmonella_enterica	0.521	362.991 KB	5	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNTBI010000001.1 Salmonella enterica subsp. enterica serovar Kiambu strain PNUSAS390374 SAMN37803738-rid19694283.denovo.01, whole genome shotgun sequence	307913..308350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNTBI010000030.1 Salmonella enterica subsp. enterica serovar Kiambu strain PNUSAS390374 SAMN37803738-rid19694283.guided.23, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032634225.1_PDT001926181.1_genomic.fna	Salmonella_enterica	0.5218	336.637 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTBJ010000001.1 Salmonella enterica strain PNUSAS389990 SAMN37803702-rid19694263.denovo.01, whole genome shotgun sequence	789057..789494	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTBJ010000033.1 Salmonella enterica strain PNUSAS389990 SAMN37803702-rid19694263.guided.20, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTBJ010000002.1	551339..552208	99.195	870	0						
GCA_032634985.1_PDT001923348.1_genomic.fna	Salmonella_enterica	0.5218	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	13	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA17,blaTEM-1A,blaTEM-1A,lnu(F),lnu(F),floR,floR,qnrB19,qnrB19,sul2,sul2,sul2,sul2,sul2,sul2,sul2,tet(B),tet(A),tet(B),tet(A),tet(A),dfrA12,dfrA12	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTCR010000001.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.denovo.01, whole genome shotgun sequence	482682..483119	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTCR010000036.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.denovo.38, whole genome shotgun sequence	888..1724	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTCR010000036.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.denovo.38, whole genome shotgun sequence	85..888	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNTCR010000072.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.45, whole genome shotgun sequence	841..1677	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNTCR010000072.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.45, whole genome shotgun sequence	38..841	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNTCR010000073.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.46, whole genome shotgun sequence	841..1677	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTCR010000073.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.46, whole genome shotgun sequence	38..841	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNTCR010000075.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.51, whole genome shotgun sequence	600..1037	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNTCR010000077.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.59, whole genome shotgun sequence	950..1741	Spectinomycin, Streptomycin	JQ364967	aadA17	98.86	792/792	ABNTCR010000080.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.68, whole genome shotgun sequence	46..837	Spectinomycin, Streptomycin	FJ460181	blaTEM-1A	100	861/861	ABNTCR010000048.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.denovo.55, whole genome shotgun sequence	358..1218	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNTCR010000076.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.58, whole genome shotgun sequence	1018..1878	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	lnu(F)	100	822/822	ABNTCR010000054.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.denovo.65, whole genome shotgun sequence	74..895	Lincomycin	EU118119	lnu(F)	100	822/822	ABNTCR010000078.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.63, whole genome shotgun sequence	115..936	Lincomycin	EU118119	floR	98.19	1214/1215	ABNTCR010000036.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.denovo.38, whole genome shotgun sequence	4860..6073	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTCR010000074.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.47, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNTCR010000056.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.denovo.67, whole genome shotgun sequence	272..916	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNTCR010000079.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.64, whole genome shotgun sequence	313..957	Ciprofloxacin	EU432277	sul2	100	770/816	ABNTCR010000046.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.denovo.53, whole genome shotgun sequence	1..770	Sulfamethoxazole	AB366440	sul2	100	770/816	ABNTCR010000046.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.denovo.53, whole genome shotgun sequence	1..770	Sulfamethoxazole	FN995456	sul2	100	770/816	ABNTCR010000046.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.denovo.53, whole genome shotgun sequence	1..770	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNTCR010000081.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.70, whole genome shotgun sequence	15..830	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNTCR010000082.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.71, whole genome shotgun sequence	15..830	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNTCR010000083.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.72, whole genome shotgun sequence	15..830	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNTCR010000084.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.73, whole genome shotgun sequence	15..830	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNTCR010000024.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.denovo.24, whole genome shotgun sequence	1093..2298	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1275/1275	ABNTCR010000036.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.denovo.38, whole genome shotgun sequence	2985..4259	Doxycycline, Tetracycline	AF534183	tet(B)	100	1206/1206	ABNTCR010000071.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.42, whole genome shotgun sequence	3339..4544	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1275/1275	ABNTCR010000072.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.45, whole genome shotgun sequence	2938..4212	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNTCR010000073.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.46, whole genome shotgun sequence	2938..4212	Doxycycline, Tetracycline	AF534183	dfrA12	100	498/498	ABNTCR010000044.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.denovo.50, whole genome shotgun sequence	725..1222	Trimethoprim	AM040708	dfrA12	100	498/498	ABNTCR010000077.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.guided.59, whole genome shotgun sequence	45..542	Trimethoprim	AM040708																																																																																																																																																																																																																																																												enterobacteriales	IncFIB(S)	100	643 / 643	ABNTCR010000031.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.denovo.31, whole genome shotgun sequence	20273..20915	enterobacteriales	IncFII(S)	100	262 / 262	ABNTCR010000031.1 Salmonella enterica strain PNUSAS389394 SAMN37707008-rid19663203.denovo.31, whole genome shotgun sequence	4927..5188																																																avrA	ABNTCR010000004.1	143595..144464	99.885	870	0						
GCA_032635005.1_PDT001923347.1_genomic.fna	Salmonella_enterica	0.521	401.232 KB	4	aroC_13,dnaN_127,hemD_506,hisD_113,purE_114,sucA_107,thrA_4	3095	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_506	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTCS010000001.1 Salmonella enterica strain PNUSAS389397 SAMN37707005-rid19663193.denovo.01, whole genome shotgun sequence	498627..499064	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTCS010000029.1 Salmonella enterica strain PNUSAS389397 SAMN37707005-rid19663193.guided.16, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTCS010000003.1	140447..141316	99.425	870	0						
GCA_032635025.1_PDT001923346.1_genomic.fna	Salmonella_enterica	0.5219	700.237 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNTCT010000001.1 Salmonella enterica strain PNUSAS389390 SAMN37707012-rid19663183.denovo.01, whole genome shotgun sequence	510630..511067	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.56	436/438	ABNTCT010000023.1 Salmonella enterica strain PNUSAS389390 SAMN37707012-rid19663183.guided.21, whole genome shotgun sequence	2676..3111	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTCT010000002.1	556186..557054	99.425	870	0						
GCA_032635045.1_PDT001923345.1_genomic.fna	Salmonella_enterica	0.5213	400.833 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTCU010000002.1 Salmonella enterica strain PNUSAS389391 SAMN37707011-rid19663173.denovo.02, whole genome shotgun sequence	176094..176531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTCU010000030.1 Salmonella enterica strain PNUSAS389391 SAMN37707011-rid19663173.guided.26, whole genome shotgun sequence	3927..4364	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTCU010000022.1 Salmonella enterica strain PNUSAS389391 SAMN37707011-rid19663173.denovo.22, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNTCU010000023.1 Salmonella enterica strain PNUSAS389391 SAMN37707011-rid19663173.denovo.23, whole genome shotgun sequence	3390..3651																																																avrA	ABNTCU010000001.1	553098..553967	99.54	870	0						
GCA_032635065.1_PDT001923344.1_genomic.fna	Salmonella_enterica	0.5201	219.167 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTCV010000001.1 Salmonella enterica strain PNUSAS389389 SAMN37707013-rid19663163.denovo.01, whole genome shotgun sequence	207339..207776	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNTCV010000050.1 Salmonella enterica strain PNUSAS389389 SAMN37707013-rid19663163.guided.39, whole genome shotgun sequence	147..584	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNTCV010000025.1 Salmonella enterica strain PNUSAS389389 SAMN37707013-rid19663163.denovo.25, whole genome shotgun sequence	44716..45358	enterobacteriales	IncFII(S)	100	262 / 262	ABNTCV010000025.1 Salmonella enterica strain PNUSAS389389 SAMN37707013-rid19663163.denovo.25, whole genome shotgun sequence	29369..29630		enterobacteriales	IncX1	98.93	374 / 374	ABNTCV010000033.1 Salmonella enterica strain PNUSAS389389 SAMN37707013-rid19663163.denovo.33, whole genome shotgun sequence	7668..8041																																									avrA	ABNTCV010000005.1	95109..95978	99.885	870	0						
GCA_032635085.1_PDT001923343.1_genomic.fna	Salmonella_enterica	0.5217	699.691 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNTCW010000001.1 Salmonella enterica strain PNUSAS389398 SAMN37707004-rid19663153.denovo.01, whole genome shotgun sequence	486956..487393	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNTCW010000022.1 Salmonella enterica strain PNUSAS389398 SAMN37707004-rid19663153.guided.20, whole genome shotgun sequence	1530..1967	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTCW010000002.1	544607..545475	99.425	870	0						
GCA_032635105.1_PDT001923341.1_genomic.fna	Salmonella_enterica	0.5214	388.801 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTCY010000001.1 Salmonella enterica strain PNUSAS389392 SAMN37707010-rid19663133.denovo.01, whole genome shotgun sequence	406860..407297	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTCY010000036.1 Salmonella enterica strain PNUSAS389392 SAMN37707010-rid19663133.guided.25, whole genome shotgun sequence	2704..3141	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTCY010000009.1	192635..193503	99.195	870	0						
GCA_032635125.1_PDT001923340.1_genomic.fna	Salmonella_enterica	0.52	236.387 KB	6	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),IncFIB(pHCM2)	aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNTCZ010000002.1 Salmonella enterica strain PNUSAS389395 SAMN37707007-rid19663123.denovo.02, whole genome shotgun sequence	173079..173516	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNTCZ010000043.1 Salmonella enterica strain PNUSAS389395 SAMN37707007-rid19663123.guided.32, whole genome shotgun sequence	4911..5348	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNTCZ010000035.1 Salmonella enterica strain PNUSAS389395 SAMN37707007-rid19663123.denovo.38, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNTCZ010000045.1 Salmonella enterica strain PNUSAS389395 SAMN37707007-rid19663123.guided.39, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	tet(A)	99.83	1200/1200	ABNTCZ010000031.1 Salmonella enterica strain PNUSAS389395 SAMN37707007-rid19663123.denovo.33, whole genome shotgun sequence	3910..5109	Doxycycline, Tetracycline	AJ517790	tet(A)	99.83	1200/1200	ABNTCZ010000044.1 Salmonella enterica strain PNUSAS389395 SAMN37707007-rid19663123.guided.36, whole genome shotgun sequence	1898..3097	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNTCZ010000035.1 Salmonella enterica strain PNUSAS389395 SAMN37707007-rid19663123.denovo.38, whole genome shotgun sequence	1150..1280	enterobacteriales	IncFIB(pHCM2)	96.8	875 / 875	ABNTCZ010000015.1 Salmonella enterica strain PNUSAS389395 SAMN37707007-rid19663123.denovo.15, whole genome shotgun sequence	88355..89229																																																avrA	ABNTCZ010000001.1	524734..525603	99.425	870	0						
GCA_032635145.1_PDT001923342.1_genomic.fna	Salmonella_enterica	0.5211	229.358 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	5	aac(6')-Iaa,aadA2,aadA2,aac(6')-Iaa,qnrB19,qnrB19,tet(B),tet(B),dfrA12,dfrA12	0		4	ColRNAI,IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTCX010000001.1 Salmonella enterica strain PNUSAS389393 SAMN37707009-rid19663143.denovo.01, whole genome shotgun sequence	180691..181128	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNTCX010000026.1 Salmonella enterica strain PNUSAS389393 SAMN37707009-rid19663143.denovo.26, whole genome shotgun sequence	2428..3219	Spectinomycin, Streptomycin	JQ364967	aadA2	100	792/792	ABNTCX010000058.1 Salmonella enterica strain PNUSAS389393 SAMN37707009-rid19663143.guided.38, whole genome shotgun sequence	6155..6946	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	100	438/438	ABNTCX010000061.1 Salmonella enterica strain PNUSAS389393 SAMN37707009-rid19663143.guided.50, whole genome shotgun sequence	1471..1908	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNTCX010000048.1 Salmonella enterica strain PNUSAS389393 SAMN37707009-rid19663143.denovo.53, whole genome shotgun sequence	272..916	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNTCX010000062.1 Salmonella enterica strain PNUSAS389393 SAMN37707009-rid19663143.guided.52, whole genome shotgun sequence	313..957	Ciprofloxacin	EU432277	tet(B)	100	1206/1206	ABNTCX010000026.1 Salmonella enterica strain PNUSAS389393 SAMN37707009-rid19663143.denovo.26, whole genome shotgun sequence	4370..5575	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNTCX010000058.1 Salmonella enterica strain PNUSAS389393 SAMN37707009-rid19663143.guided.38, whole genome shotgun sequence	3799..5004	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABNTCX010000026.1 Salmonella enterica strain PNUSAS389393 SAMN37707009-rid19663143.denovo.26, whole genome shotgun sequence	1523..2020	Trimethoprim	AM040708	dfrA12	100	498/498	ABNTCX010000058.1 Salmonella enterica strain PNUSAS389393 SAMN37707009-rid19663143.guided.38, whole genome shotgun sequence	7354..7851	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	ColRNAI	90.08	131 / 130	ABNTCX010000039.1 Salmonella enterica strain PNUSAS389393 SAMN37707009-rid19663143.denovo.41, whole genome shotgun sequence	3981..4111	enterobacteriales	IncFIB(S)	100	643 / 643	ABNTCX010000031.1 Salmonella enterica strain PNUSAS389393 SAMN37707009-rid19663143.denovo.31, whole genome shotgun sequence	20272..20914		enterobacteriales	IncFII(S)	100	262 / 262	ABNTCX010000031.1 Salmonella enterica strain PNUSAS389393 SAMN37707009-rid19663143.denovo.31, whole genome shotgun sequence	4926..5187		enterobacteriales	IncI(Gamma)	100	137 / 141	ABNTCX010000020.1 Salmonella enterica strain PNUSAS389393 SAMN37707009-rid19663143.denovo.20, whole genome shotgun sequence	76995..77131																																		avrA	ABNTCX010000003.1	143228..144097	99.885	870	0						
GCA_032635165.1_PDT001926171.1_genomic.fna	Salmonella_enterica	0.5194	394.481 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNTDA010000001.1 Salmonella enterica strain FDA1199253-S001-005 SAMN37803656-rid19694213.denovo.01, whole genome shotgun sequence	645999..646436	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNTDA010000031.1 Salmonella enterica strain FDA1199253-S001-005 SAMN37803656-rid19694213.guided.23, whole genome shotgun sequence	5059..5496	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTDA010000002.1	544714..545582	99.425	870	0						
GCA_032635205.1_PDT001923338.1_genomic.fna	Salmonella_enterica	0.5199	489.646 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTDC010000001.1 Salmonella enterica strain PNUSAS389399 SAMN37707003-rid19663103.denovo.01, whole genome shotgun sequence	733675..734112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTDC010000023.1 Salmonella enterica strain PNUSAS389399 SAMN37707003-rid19663103.guided.18, whole genome shotgun sequence	5102..5539	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTDC010000017.1 Salmonella enterica strain PNUSAS389399 SAMN37707003-rid19663103.denovo.17, whole genome shotgun sequence	18078..18720	enterobacteriales	IncFII(S)	100	262 / 262	ABNTDC010000017.1 Salmonella enterica strain PNUSAS389399 SAMN37707003-rid19663103.denovo.17, whole genome shotgun sequence	3377..3638		enterobacteriales	IncX1	98.67	377 / 377	ABNTDC010000014.1 Salmonella enterica strain PNUSAS389399 SAMN37707003-rid19663103.denovo.14, whole genome shotgun sequence	40967..41343																																									avrA	ABNTDC010000002.1	553087..553956	99.54	870	0						
GCA_032635225.1_PDT001923339.1_genomic.fna	Salmonella_enterica	0.5208	265.426 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B),dfrA14,dfrA14	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTDB010000001.1 Salmonella enterica strain PNUSAS389396 SAMN37707006-rid19663113.denovo.01, whole genome shotgun sequence	468110..468547	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNTDB010000050.1 Salmonella enterica strain PNUSAS389396 SAMN37707006-rid19663113.denovo.54, whole genome shotgun sequence	1233..2063	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	ABNTDB010000050.1 Salmonella enterica strain PNUSAS389396 SAMN37707006-rid19663113.denovo.54, whole genome shotgun sequence	2069..2872	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNTDB010000065.1 Salmonella enterica strain PNUSAS389396 SAMN37707006-rid19663113.guided.48, whole genome shotgun sequence	4884..5321	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNTDB010000066.1 Salmonella enterica strain PNUSAS389396 SAMN37707006-rid19663113.guided.56, whole genome shotgun sequence	1920..2750	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	ABNTDB010000066.1 Salmonella enterica strain PNUSAS389396 SAMN37707006-rid19663113.guided.56, whole genome shotgun sequence	1111..1914	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNTDB010000050.1 Salmonella enterica strain PNUSAS389396 SAMN37707006-rid19663113.denovo.54, whole genome shotgun sequence	142..1002	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNTDB010000068.1 Salmonella enterica strain PNUSAS389396 SAMN37707006-rid19663113.guided.63, whole genome shotgun sequence	183..1043	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNTDB010000050.1 Salmonella enterica strain PNUSAS389396 SAMN37707006-rid19663113.denovo.54, whole genome shotgun sequence	2933..3748	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNTDB010000066.1 Salmonella enterica strain PNUSAS389396 SAMN37707006-rid19663113.guided.56, whole genome shotgun sequence	235..1050	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNTDB010000042.1 Salmonella enterica strain PNUSAS389396 SAMN37707006-rid19663113.denovo.44, whole genome shotgun sequence	728..1933	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNTDB010000064.1 Salmonella enterica strain PNUSAS389396 SAMN37707006-rid19663113.guided.46, whole genome shotgun sequence	4023..5228	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABNTDB010000055.1 Salmonella enterica strain PNUSAS389396 SAMN37707006-rid19663113.denovo.61, whole genome shotgun sequence	6..479	Trimethoprim	KF921535	dfrA14	100	474/474	ABNTDB010000067.1 Salmonella enterica strain PNUSAS389396 SAMN37707006-rid19663113.guided.60, whole genome shotgun sequence	1217..1690	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col156	96.1	154 / 154	ABNTDB010000048.1 Salmonella enterica strain PNUSAS389396 SAMN37707006-rid19663113.denovo.52, whole genome shotgun sequence	965..1118																																																						avrA	ABNTDB010000007.1	93861..94730	99.885	870	0						
GCA_032635265.1_PDT001923336.1_genomic.fna	Salmonella_enterica	0.5183	50.016 KB	27	aroC_62,dnaN_53,hemD_54,hisD_60,purE_748?,sucA_53,thrA_54	Unknown	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	74.0963855421687	purE_748?	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTDE010000010.1 Salmonella enterica strain 23NC08CG01-S SAMN37706921-rid19663083.denovo.010, whole genome shotgun sequence	26749..27186	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTDE010000107.1 Salmonella enterica strain 23NC08CG01-S SAMN37706921-rid19663083.denovo.107, whole genome shotgun sequence	6683..7519	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTDE010000107.1 Salmonella enterica strain 23NC08CG01-S SAMN37706921-rid19663083.denovo.107, whole genome shotgun sequence	7519..8322	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNTDE010000223.1 Salmonella enterica strain 23NC08CG01-S SAMN37706921-rid19663083.guided.129, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTDE010000223.1 Salmonella enterica strain 23NC08CG01-S SAMN37706921-rid19663083.guided.129, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNTDE010000225.1 Salmonella enterica strain 23NC08CG01-S SAMN37706921-rid19663083.guided.148, whole genome shotgun sequence	559..996	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNTDE010000124.1 Salmonella enterica strain 23NC08CG01-S SAMN37706921-rid19663083.denovo.125, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNTDE010000222.1 Salmonella enterica strain 23NC08CG01-S SAMN37706921-rid19663083.guided.128, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNTDE010000028.1 Salmonella enterica strain 23NC08CG01-S SAMN37706921-rid19663083.denovo.028, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNTDE010000107.1 Salmonella enterica strain 23NC08CG01-S SAMN37706921-rid19663083.denovo.107, whole genome shotgun sequence	5799..6060		enterobacteriales	IncFII	96.95	262 / 261	ABNTDE010000223.1 Salmonella enterica strain 23NC08CG01-S SAMN37706921-rid19663083.guided.129, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABNTDE010000119.1 Salmonella enterica strain 23NC08CG01-S SAMN37706921-rid19663083.denovo.119, whole genome shotgun sequence	2153..2525																																		avrA	ABNTDE010000002.1	11257..12126	99.655	870	0						
GCA_032635285.1_PDT001923335.1_genomic.fna	Salmonella_enterica	0.5205	55.956 KB	30	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTDF010000023.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.denovo.023, whole genome shotgun sequence	26679..27116	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNTDF010000127.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.denovo.130, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNTDF010000127.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.denovo.130, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNTDF010000144.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.denovo.149, whole genome shotgun sequence	1764..2555	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTDF010000144.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.denovo.149, whole genome shotgun sequence	1764..2555	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNTDF010000175.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.denovo.184, whole genome shotgun sequence	93..908	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	aac(6')-Iaa	97.49	438/438	ABNTDF010000208.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.guided.051, whole genome shotgun sequence	23230..23667	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNTDF010000212.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.guided.148, whole genome shotgun sequence	1025..2050	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNTDF010000212.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.guided.148, whole genome shotgun sequence	20..796	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNTDF010000213.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.guided.152, whole genome shotgun sequence	772..1563	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTDF010000213.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.guided.152, whole genome shotgun sequence	772..1563	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNTDF010000216.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.guided.181, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	blaCTX-M-65	100	876/876	ABNTDF010000136.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.denovo.139, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNTDF010000211.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.guided.141, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNTDF010000144.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.denovo.149, whole genome shotgun sequence	420..1259	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTDF010000213.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.guided.152, whole genome shotgun sequence	2068..2907	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTDF010000214.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.guided.158, whole genome shotgun sequence	382..1581	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNTDF010000215.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.guided.159, whole genome shotgun sequence	382..1581	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNTDF010000070.1 Salmonella enterica strain 23NC08CL01-S SAMN37706922-rid19663073.denovo.072, whole genome shotgun sequence	9109..9668																																																						avrA	ABNTDF010000026.1	16817..17686	99.655	870	0						
GCA_032635325.1_PDT001923334.1_genomic.fna	Salmonella_enterica	0.5186	231.818 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTDG010000001.1 Salmonella enterica strain 23NC08GT06-S SAMN37706923-rid19663063.denovo.01, whole genome shotgun sequence	178116..178553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTDG010000052.1 Salmonella enterica strain 23NC08GT06-S SAMN37706923-rid19663063.guided.34, whole genome shotgun sequence	23987..24424	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNTDG010000008.1 Salmonella enterica strain 23NC08GT06-S SAMN37706923-rid19663063.denovo.08, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNTDG010000054.1 Salmonella enterica strain 23NC08GT06-S SAMN37706923-rid19663063.guided.39, whole genome shotgun sequence	181..603	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNTDG010000029.1 Salmonella enterica strain 23NC08GT06-S SAMN37706923-rid19663063.denovo.30, whole genome shotgun sequence	19182..19323																																																						avrA	ABNTDG010000002.1	169368..170237	99.195	870	0						
GCA_032636145.1_PDT001926201.1_genomic.fna	Salmonella_enterica	0.522	704.625 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTDK010000001.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.denovo.01, whole genome shotgun sequence	172126..172563	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNTDK010000023.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.denovo.28, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNTDK010000036.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.guided.14, whole genome shotgun sequence	16063..16500	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNTDK010000039.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.guided.27, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNTDK010000023.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.denovo.28, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNTDK010000039.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.guided.27, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNTDK010000021.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.denovo.25, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNTDK010000038.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.guided.24, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNTDK010000020.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.denovo.23, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTDK010000040.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.guided.30, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNTDK010000023.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.denovo.28, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNTDK010000039.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.guided.27, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNTDK010000026.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.denovo.34, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTDK010000042.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.guided.33, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNTDK010000020.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.denovo.23, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNTDK010000041.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.guided.31, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNTDK010000020.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.denovo.23, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNTDK010000041.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.guided.31, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNTDK010000017.1 Salmonella enterica strain PNUSAS390341 SAMN37803573-rid19694353.denovo.19, whole genome shotgun sequence	4434..4684																																																						avrA	ABNTDK010000002.1	586519..587388	99.77	870	0						
GCA_032636205.1_PDT001926154.1_genomic.fna	Salmonella_enterica	0.5214	381.861 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTDN010000001.1 Salmonella enterica strain FDA1197180-S004-004 SAMN37803614-rid19694163.denovo.01, whole genome shotgun sequence	477371..477808	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTDN010000029.1 Salmonella enterica strain FDA1197180-S004-004 SAMN37803614-rid19694163.guided.16, whole genome shotgun sequence	20585..21022	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNTDN010000023.1 Salmonella enterica strain FDA1197180-S004-004 SAMN37803614-rid19694163.denovo.26, whole genome shotgun sequence	3981..4111																																																						avrA	ABNTDN010000009.1	175891..176759	99.195	870	0						
GCA_032636225.1_PDT001926147.1_genomic.fna	Salmonella_enterica	0.5211	155.049 KB	10	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTDO010000003.1 Salmonella enterica strain PNUSAS390333 SAMN37803557-rid19694143.denovo.03, whole genome shotgun sequence	22347..22784	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNTDO010000075.1 Salmonella enterica strain PNUSAS390333 SAMN37803557-rid19694143.guided.43, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNTDO010000015.1 Salmonella enterica strain PNUSAS390333 SAMN37803557-rid19694143.denovo.15, whole genome shotgun sequence	89617..90259																																																																	
GCA_032636245.1_PDT001926160.1_genomic.fna	Salmonella_enterica	0.5206	398.939 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNTDM010000001.1 Salmonella enterica strain FDA1197180-S004-001 SAMN37803618-rid19695653.denovo.01, whole genome shotgun sequence	486830..487267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNTDM010000032.1 Salmonella enterica strain FDA1197180-S004-001 SAMN37803618-rid19695653.guided.24, whole genome shotgun sequence	598..1035	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTDM010000002.1	544456..545324	99.425	870	0						
GCA_032636265.1_PDT001926143.1_genomic.fna	Salmonella_enterica	0.52	315.343 KB	5	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrB_p.E466D,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTDP010000001.1 Salmonella enterica strain PNUSAS390332 SAMN37803556-rid19696583.denovo.01, whole genome shotgun sequence	462168..462605	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTDP010000037.1 Salmonella enterica strain PNUSAS390332 SAMN37803556-rid19696583.guided.20, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrB p.E466D	GAA -> GAT	E -> D	Nalidixic Acid, Ciprofloxacin	26933021	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNTDP010000023.1 Salmonella enterica strain PNUSAS390332 SAMN37803556-rid19696583.denovo.26, whole genome shotgun sequence	1367..1497																																																						avrA	ABNTDP010000002.1	145916..146785	98.966	870	0						
GCA_032636285.1_PDT001926142.1_genomic.fna	Salmonella_enterica	0.5199	391.176 KB	4	aroC_11,dnaN_41,hemD_25,hisD_560,purE_10,sucA_23,thrA_4	1991	28:l,v:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440II,IncFII(p96A)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_25	hisD	100	100	hisD_560	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_4	28	l,v	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Vitkin		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTDR010000007.1 Salmonella enterica strain PNUSAS390329 SAMN37803558-rid19695593.denovo.07, whole genome shotgun sequence	80775..81212	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTDR010000033.1 Salmonella enterica strain PNUSAS390329 SAMN37803558-rid19695593.guided.20, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440II	97.16	282 / 282	ABNTDR010000023.1 Salmonella enterica strain PNUSAS390329 SAMN37803558-rid19695593.denovo.25, whole genome shotgun sequence	5136..5417	enterobacteriales	IncFII(p96A)	99.06	534 / 534	ABNTDR010000016.1 Salmonella enterica strain PNUSAS390329 SAMN37803558-rid19695593.denovo.16, whole genome shotgun sequence	557..1090																																																avrA	ABNTDR010000002.1	167961..168830	99.425	870	0						
GCA_032636305.1_PDT001926138.1_genomic.fna	Salmonella_enterica	0.5219	381.868 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTDQ010000001.1 Salmonella enterica strain FDA1197180-S004-005 SAMN37803550-rid19696563.denovo.01, whole genome shotgun sequence	561993..562430	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTDQ010000030.1 Salmonella enterica strain FDA1197180-S004-005 SAMN37803550-rid19696563.guided.23, whole genome shotgun sequence	4381..4818	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNTDQ010000024.1 Salmonella enterica strain FDA1197180-S004-005 SAMN37803550-rid19696563.denovo.27, whole genome shotgun sequence	3981..4111																																																						avrA	ABNTDQ010000010.1	175891..176759	99.195	870	0						
GCA_032637105.1_PDT001926186.1_genomic.fna	Salmonella_enterica	0.5201	413.527 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTDS010000001.1 Salmonella enterica strain PNUSAS389983 SAMN37803705-rid19694293.denovo.01, whole genome shotgun sequence	583633..584070	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTDS010000020.1 Salmonella enterica strain PNUSAS389983 SAMN37803705-rid19694293.guided.16, whole genome shotgun sequence	11064..11501	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032637165.1_PDT001926182.1_genomic.fna	Salmonella_enterica	0.5222	409.763 KB	5	aroC_654,dnaN_41,hemD_109,hisD_279,purE_2,sucA_100,thrA_126	3301	13:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_654	dnaN	100	100	dnaN_41	hemD	100	100	hemD_109	hisD	100	100	hisD_279	purE	100	100	purE_2	sucA	100	100	sucA_100	thrA	100	100	thrA_126	13	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Telelkebir		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNTDU010000004.1 Salmonella enterica strain PNUSAS389989 SAMN37803697-rid19694273.denovo.04, whole genome shotgun sequence	81061..81498	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNTDU010000034.1 Salmonella enterica strain PNUSAS389989 SAMN37803697-rid19694273.guided.22, whole genome shotgun sequence	8844..9281	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTDU010000006.1	140428..141297	99.08	870	0						
GCA_032638085.1_PDT001926145.1_genomic.fna	Salmonella_enterica	0.5209	204.228 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTEF010000002.1 Salmonella enterica strain PNUSAS390334 SAMN37803551-rid19695603.denovo.02, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNTEF010000048.1 Salmonella enterica strain PNUSAS390334 SAMN37803551-rid19695603.denovo.55, whole genome shotgun sequence	17..796	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNTEF010000053.1 Salmonella enterica strain PNUSAS390334 SAMN37803551-rid19695603.guided.27, whole genome shotgun sequence	26049..26486	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNTEF010000059.1 Salmonella enterica strain PNUSAS390334 SAMN37803551-rid19695603.guided.53, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNTEF010000045.1 Salmonella enterica strain PNUSAS390334 SAMN37803551-rid19695603.denovo.51, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNTEF010000058.1 Salmonella enterica strain PNUSAS390334 SAMN37803551-rid19695603.guided.49, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNTEF010000038.1 Salmonella enterica strain PNUSAS390334 SAMN37803551-rid19695603.denovo.40, whole genome shotgun sequence	5127..6341	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNTEF010000056.1 Salmonella enterica strain PNUSAS390334 SAMN37803551-rid19695603.guided.44, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNTEF010000057.1 Salmonella enterica strain PNUSAS390334 SAMN37803551-rid19695603.guided.45, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNTEF010000038.1 Salmonella enterica strain PNUSAS390334 SAMN37803551-rid19695603.denovo.40, whole genome shotgun sequence	3015..4190	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNTEF010000056.1 Salmonella enterica strain PNUSAS390334 SAMN37803551-rid19695603.guided.44, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	IncFIB(S)	100	643 / 643	ABNTEF010000019.1 Salmonella enterica strain PNUSAS390334 SAMN37803551-rid19695603.denovo.19, whole genome shotgun sequence	48509..49151	enterobacteriales	IncFII(S)	100	262 / 262	ABNTEF010000019.1 Salmonella enterica strain PNUSAS390334 SAMN37803551-rid19695603.denovo.19, whole genome shotgun sequence	64236..64497																																																avrA	ABNTEF010000001.1	506641..507510	99.885	870	0						
GCA_032640105.1_PDT001926148.1_genomic.fna	Salmonella_enterica	0.5213	696.229 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTIB010000001.1 Salmonella enterica strain PNUSAS390339 SAMN37803571-rid19696603.denovo.01, whole genome shotgun sequence	774495..774932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTIB010000028.1 Salmonella enterica strain PNUSAS390339 SAMN37803571-rid19696603.guided.16, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTIB010000019.1 Salmonella enterica strain PNUSAS390339 SAMN37803571-rid19696603.denovo.21, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNTIB010000021.1 Salmonella enterica strain PNUSAS390339 SAMN37803571-rid19696603.denovo.24, whole genome shotgun sequence	3395..3656																																																avrA	ABNTIB010000002.1	584594..585463	99.54	870	0						
GCA_032641185.1_PDT001810546.1_genomic.fna	Salmonella_enterica	0.5208	406.453 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTKK010000001.1 Salmonella enterica strain PNUSAS360734 SAMN36339709-rid18735393.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTKK010000026.1 Salmonella enterica strain PNUSAS360734 SAMN36339709-rid18735393.guided.15, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTKK010000019.1 Salmonella enterica strain PNUSAS360734 SAMN36339709-rid18735393.denovo.22, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNTKK010000021.1 Salmonella enterica strain PNUSAS360734 SAMN36339709-rid18735393.denovo.24, whole genome shotgun sequence	3394..3655		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNTKK010000013.1 Salmonella enterica strain PNUSAS360734 SAMN36339709-rid18735393.denovo.13, whole genome shotgun sequence	80192..80333																																									avrA	ABNTKK010000002.1	553485..554354	99.54	870	0						
GCA_032641205.1_PDT001810558.1_genomic.fna	Salmonella_enterica	0.5228	296.325 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTKE010000002.1 Salmonella enterica subsp. enterica serovar Montevideo strain 23IA06GB01-L-S1 SAMN36343847-rid18735443.denovo.02, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTKE010000033.1 Salmonella enterica subsp. enterica serovar Montevideo strain 23IA06GB01-L-S1 SAMN36343847-rid18735443.guided.28, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032641285.1_PDT001810542.1_genomic.fna	Salmonella_enterica	0.5223	387.908 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNTKO010000002.1 Salmonella enterica strain PNUSAS360004 SAMN36339717-rid18734703.denovo.02, whole genome shotgun sequence	400338..400775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNTKO010000032.1 Salmonella enterica strain PNUSAS360004 SAMN36339717-rid18734703.guided.18, whole genome shotgun sequence	5121..5558	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNTKO010000022.1 Salmonella enterica strain PNUSAS360004 SAMN36339717-rid18734703.denovo.25, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNTKO010000023.1 Salmonella enterica strain PNUSAS360004 SAMN36339717-rid18734703.denovo.26, whole genome shotgun sequence	2528..2639																																																avrA	ABNTKO010000007.1	174277..175145	99.425	870	0						
GCA_032641345.1_PDT001810557.1_genomic.fna	Salmonella_enterica	0.5198	211.975 KB	9	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNTKF010000005.1 Salmonella enterica strain PNUSAS361268 SAMN36337706-rid18734723.denovo.05, whole genome shotgun sequence	136364..136801	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNTKF010000051.1 Salmonella enterica strain PNUSAS361268 SAMN36337706-rid18734723.guided.29, whole genome shotgun sequence	20412..20849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNTKF010000022.1 Salmonella enterica strain PNUSAS361268 SAMN36337706-rid18734723.denovo.22, whole genome shotgun sequence	62731..63373																																																																	
GCA_032641365.1_PDT001810551.1_genomic.fna	Salmonella_enterica	0.5206	360.6 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTKG010000001.1 Salmonella enterica strain PNUSAS361260 SAMN36337688-rid18735433.denovo.01, whole genome shotgun sequence	798764..799201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTKG010000037.1 Salmonella enterica strain PNUSAS361260 SAMN36337688-rid18735433.guided.24, whole genome shotgun sequence	6526..6963	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTKG010000002.1	551169..552038	99.195	870	0						
GCA_032641385.1_PDT001810550.1_genomic.fna	Salmonella_enterica	0.5207	688.699 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTKH010000001.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.denovo.01, whole genome shotgun sequence	172127..172564	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNTKH010000023.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.denovo.28, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNTKH010000036.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.guided.10, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNTKH010000040.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.guided.27, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNTKH010000023.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.denovo.28, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNTKH010000040.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.guided.27, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNTKH010000021.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.denovo.25, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNTKH010000039.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.guided.24, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNTKH010000020.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.denovo.23, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTKH010000041.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.guided.30, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNTKH010000023.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.denovo.28, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNTKH010000040.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.guided.27, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNTKH010000027.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.denovo.35, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTKH010000043.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.guided.34, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNTKH010000020.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.denovo.23, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNTKH010000042.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.guided.31, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNTKH010000020.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.denovo.23, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNTKH010000042.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.guided.31, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNTKH010000017.1 Salmonella enterica strain PNUSAS361264 SAMN36337685-rid18735423.denovo.19, whole genome shotgun sequence	4434..4684																																																						avrA	ABNTKH010000002.1	553479..554348	99.77	870	0						
GCA_032641405.1_PDT001810549.1_genomic.fna	Salmonella_enterica	0.5222	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTKI010000001.1 Salmonella enterica strain PNUSAS361259 SAMN36337709-rid18735413.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNTKI010000028.1 Salmonella enterica strain PNUSAS361259 SAMN36337709-rid18735413.guided.10, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTKI010000002.1	157308..158177	98.966	870	0						
GCA_032641425.1_PDT001810547.1_genomic.fna	Salmonella_enterica	0.5217	380.131 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,ColRNAI	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNTKJ010000001.1 Salmonella enterica strain PNUSAS361282 SAMN36338923-rid18734713.denovo.01, whole genome shotgun sequence	405412..405849	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNTKJ010000035.1 Salmonella enterica strain PNUSAS361282 SAMN36338923-rid18734713.guided.13, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.81	113 / 114	ABNTKJ010000024.1 Salmonella enterica strain PNUSAS361282 SAMN36338923-rid18734713.denovo.27, whole genome shotgun sequence	2528..2639	enterobacteriales	ColRNAI	90.83	109 / 130	ABNTKJ010000021.1 Salmonella enterica strain PNUSAS361282 SAMN36338923-rid18734713.denovo.24, whole genome shotgun sequence	1016..1124																																																avrA	ABNTKJ010000009.1	94166..95034	99.425	870	0						
GCA_032641445.1_PDT001810545.1_genomic.fna	Salmonella_enterica	0.5206	382.958 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTKL010000002.1 Salmonella enterica strain PNUSAS361312 SAMN36339000-rid18735383.denovo.02, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTKL010000033.1 Salmonella enterica strain PNUSAS361312 SAMN36339000-rid18735383.guided.12, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNTKL010000021.1 Salmonella enterica strain PNUSAS361312 SAMN36339000-rid18735383.denovo.24, whole genome shotgun sequence	12501..12642																																																						avrA	ABNTKL010000012.1	93874..94742	99.195	870	0						
GCA_032641705.1_PDT001810467.1_genomic.fna	Salmonella_enterica	0.5215	718.678 KB	2	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	7	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-55,blaTEM-214,blaTEM-209,blaTEM-206,blaTEM-141,blaTEM-1B,blaCTX-M-55,blaTEM-214,blaTEM-206,blaTEM-141,blaTEM-1B	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTLD010000001.1 Salmonella enterica strain PNUSAS361326 SAMN36338991-rid18734483.denovo.01, whole genome shotgun sequence	1328810..1329247	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTLD010000021.1 Salmonella enterica strain PNUSAS361326 SAMN36338991-rid18734483.guided.13, whole genome shotgun sequence	2254..2691	Amikacin, Tobramycin	NC_003197	blaCTX-M-55	100	876/876	ABNTLD010000016.1 Salmonella enterica strain PNUSAS361326 SAMN36338991-rid18734483.denovo.19, whole genome shotgun sequence	731..1606	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-214	100	740/861	ABNTLD010000016.1 Salmonella enterica strain PNUSAS361326 SAMN36338991-rid18734483.denovo.19, whole genome shotgun sequence	2388..3127	Unknown Beta-lactam	KP050491	blaTEM-209	100	740/861	ABNTLD010000016.1 Salmonella enterica strain PNUSAS361326 SAMN36338991-rid18734483.denovo.19, whole genome shotgun sequence	2388..3127	Unknown Beta-lactam	KF240808	blaTEM-206	100	740/861	ABNTLD010000016.1 Salmonella enterica strain PNUSAS361326 SAMN36338991-rid18734483.denovo.19, whole genome shotgun sequence	2388..3127	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	100	740/861	ABNTLD010000016.1 Salmonella enterica strain PNUSAS361326 SAMN36338991-rid18734483.denovo.19, whole genome shotgun sequence	2388..3127	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	100	740/861	ABNTLD010000016.1 Salmonella enterica strain PNUSAS361326 SAMN36338991-rid18734483.denovo.19, whole genome shotgun sequence	2388..3127	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNTLD010000024.1 Salmonella enterica strain PNUSAS361326 SAMN36338991-rid18734483.guided.20, whole genome shotgun sequence	408..1283	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-214	99.87	746/861	ABNTLD010000024.1 Salmonella enterica strain PNUSAS361326 SAMN36338991-rid18734483.guided.20, whole genome shotgun sequence	2065..2810	Unknown Beta-lactam	KP050491	blaTEM-206	99.87	746/861	ABNTLD010000024.1 Salmonella enterica strain PNUSAS361326 SAMN36338991-rid18734483.guided.20, whole genome shotgun sequence	2065..2810	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	99.87	746/861	ABNTLD010000024.1 Salmonella enterica strain PNUSAS361326 SAMN36338991-rid18734483.guided.20, whole genome shotgun sequence	2065..2810	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	99.87	746/861	ABNTLD010000024.1 Salmonella enterica strain PNUSAS361326 SAMN36338991-rid18734483.guided.20, whole genome shotgun sequence	2065..2810	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																													gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	ABNTLD010000002.1	144730..145599	99.31	870	0						
GCA_032641725.1_PDT001810464.1_genomic.fna	Salmonella_enterica	0.5135	320.728 KB	6	aroC_289,dnaN_26,hemD_30,hisD_282,purE_21,sucA_854*,thrA_28	5538*	48:i:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_289	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_282	purE	100	100	purE_21	sucA	99.8003992015968	100	sucA_854*	thrA	100	100	thrA_28	48	i	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:i:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNTLG010000009.1 Salmonella enterica strain PNUSAS361293 SAMN36338939-rid18734803.denovo.09, whole genome shotgun sequence	112433..112870	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNTLG010000039.1 Salmonella enterica strain PNUSAS361293 SAMN36338939-rid18734803.guided.15, whole genome shotgun sequence	53644..54081	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTLG010000001.1	182030..182899	96.552	870	0						
GCA_032641785.1_PDT001810463.1_genomic.fna	Salmonella_enterica	0.521	478.46 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,sul2,sul2,sul2,tet(A),tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTLH010000006.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.denovo.06, whole genome shotgun sequence	159428..159865	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTLH010000019.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.denovo.24, whole genome shotgun sequence	3907..4743	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTLH010000019.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.denovo.24, whole genome shotgun sequence	4743..5546	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNTLH010000027.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.guided.19, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTLH010000029.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.guided.22, whole genome shotgun sequence	9237..10073	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTLH010000029.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.guided.22, whole genome shotgun sequence	8434..9237	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNTLH010000030.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.guided.23, whole genome shotgun sequence	9237..10073	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTLH010000030.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.guided.23, whole genome shotgun sequence	8434..9237	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNTLH010000032.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.guided.28, whole genome shotgun sequence	2057..3202	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNTLH010000033.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.guided.30, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNTLH010000033.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.guided.30, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNTLH010000033.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.guided.30, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNTLH010000031.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNTLH010000019.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.denovo.24, whole genome shotgun sequence	5607..6422	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNTLH010000029.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.guided.22, whole genome shotgun sequence	7558..8373	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNTLH010000030.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.guided.23, whole genome shotgun sequence	7558..8373	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNTLH010000019.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.denovo.24, whole genome shotgun sequence	1372..2646	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1275/1275	ABNTLH010000029.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.guided.22, whole genome shotgun sequence	11334..12608	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNTLH010000030.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.guided.23, whole genome shotgun sequence	11334..12608	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																							enterobacteriales	IncC	100	417 / 417	ABNTLH010000014.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.denovo.14, whole genome shotgun sequence	17489..17905	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNTLH010000013.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.denovo.13, whole genome shotgun sequence	26346..26605		enterobacteriales	IncX1	98.66	374 / 374	ABNTLH010000013.1 Salmonella enterica strain PNUSAS361288 SAMN36338920-rid18734793.denovo.13, whole genome shotgun sequence	62200..62573																																									avrA	ABNTLH010000001.1	504488..505356	99.54	870	0						
GCA_032641825.1_PDT001810461.1_genomic.fna	Salmonella_enterica	0.5202	404.484 KB	4	aroC_11,dnaN_10,hemD_13,hisD_13,purE_10,sucA_13,thrA_4	20	4:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNTLJ010000002.1 Salmonella enterica strain PNUSAS361306 SAMN36338972-rid18734783.denovo.02, whole genome shotgun sequence	571040..571477	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNTLJ010000028.1 Salmonella enterica strain PNUSAS361306 SAMN36338972-rid18734783.guided.27, whole genome shotgun sequence	87..524	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNTLJ010000004.1 Salmonella enterica strain PNUSAS361306 SAMN36338972-rid18734783.denovo.04, whole genome shotgun sequence	155082..155504	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNTLJ010000027.1 Salmonella enterica strain PNUSAS361306 SAMN36338972-rid18734783.guided.23, whole genome shotgun sequence	1226..1648	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032641865.1_PDT001810459.1_genomic.fna	Salmonella_enterica	0.5211	394.336 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNTLL010000001.1 Salmonella enterica strain PNUSAS360726 SAMN36339698-rid18734773.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNTLL010000032.1 Salmonella enterica strain PNUSAS360726 SAMN36339698-rid18734773.guided.22, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNTLL010000012.1 Salmonella enterica strain PNUSAS360726 SAMN36339698-rid18734773.denovo.12, whole genome shotgun sequence	72677..72818																																																						avrA	ABNTLL010000002.1	145182..146051	99.31	870	0						
GCA_032641905.1_PDT001810457.1_genomic.fna	Salmonella_enterica	0.521	762.424 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI(Gamma)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTLN010000001.1 Salmonella enterica strain PNUSAS361289 SAMN36338942-rid18734453.denovo.01, whole genome shotgun sequence	482094..482531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNTLN010000033.1 Salmonella enterica strain PNUSAS361289 SAMN36338942-rid18734453.guided.08, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI(Gamma)	100	137 / 141	ABNTLN010000015.1 Salmonella enterica strain PNUSAS361289 SAMN36338942-rid18734453.denovo.17, whole genome shotgun sequence	3825..3961																																																						avrA	ABNTLN010000004.1	553681..554550	99.655	870	0						
GCA_032641945.1_PDT001810454.1_genomic.fna	Salmonella_enterica	0.5216	337.594 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTLP010000001.1 Salmonella enterica strain PNUSAS360730 SAMN36339706-rid18734743.denovo.01, whole genome shotgun sequence	462164..462601	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTLP010000036.1 Salmonella enterica strain PNUSAS360730 SAMN36339706-rid18734743.guided.22, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	ABNTLP010000024.1 Salmonella enterica strain PNUSAS360730 SAMN36339706-rid18734743.denovo.27, whole genome shotgun sequence	3280..3431																																																						avrA	ABNTLP010000002.1	585339..586208	99.195	870	0						
GCA_032641965.1_PDT001810453.1_genomic.fna	Salmonella_enterica	0.5213	377.353 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTLQ010000002.1 Salmonella enterica strain PNUSAS360001 SAMN36339714-rid18734733.denovo.02, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNTLQ010000045.1 Salmonella enterica strain PNUSAS360001 SAMN36339714-rid18734733.guided.24, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNTLQ010000022.1 Salmonella enterica strain PNUSAS360001 SAMN36339714-rid18734733.denovo.22, whole genome shotgun sequence	44727..45369	enterobacteriales	IncFII(S)	100	262 / 262	ABNTLQ010000022.1 Salmonella enterica strain PNUSAS360001 SAMN36339714-rid18734733.denovo.22, whole genome shotgun sequence	29382..29643																																																avrA	ABNTLQ010000001.1	451984..452853	99.885	870	0						
GCA_032641985.1_PDT001810451.1_genomic.fna	Salmonella_enterica	0.5212	609.466 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTLR010000001.1 Salmonella enterica strain PNUSAS361309 SAMN36338969-rid18734433.denovo.01, whole genome shotgun sequence	407341..407778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTLR010000038.1 Salmonella enterica strain PNUSAS361309 SAMN36338969-rid18734433.guided.23, whole genome shotgun sequence	1906..2343	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTLR010000003.1	514731..515599	99.195	870	0						
GCA_032642005.1_PDT001810446.1_genomic.fna	Salmonella_enterica	0.5222	443.924 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTLU010000001.1 Salmonella enterica strain PNUSAS360725 SAMN36339700-rid18734403.denovo.01, whole genome shotgun sequence	91463..91900	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNTLU010000041.1 Salmonella enterica strain PNUSAS360725 SAMN36339700-rid18734403.guided.19, whole genome shotgun sequence	12388..12825	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTLU010000004.1	183141..184010	98.966	870	0						
GCA_032642045.1_PDT001810445.1_genomic.fna	Salmonella_enterica	0.5212	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNTLV010000004.1 Salmonella enterica strain PNUSAS361283 SAMN36338926-rid18732713.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNTLV010000049.1 Salmonella enterica strain PNUSAS361283 SAMN36338926-rid18732713.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNTLV010000018.1 Salmonella enterica strain PNUSAS361283 SAMN36338926-rid18732713.denovo.19, whole genome shotgun sequence	48446..49088	enterobacteriales	IncFII(S)	100	262 / 262	ABNTLV010000018.1 Salmonella enterica strain PNUSAS361283 SAMN36338926-rid18732713.denovo.19, whole genome shotgun sequence	64172..64433																																																avrA	ABNTLV010000005.1	175018..175886	100	869	0						
GCA_032642085.1_PDT001810444.1_genomic.fna	Salmonella_enterica	0.5204	490.242 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		4	IncFIB(S),IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTLW010000001.1 Salmonella enterica strain PNUSAS361327 SAMN36339285-rid18734393.denovo.01, whole genome shotgun sequence	857593..858030	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTLW010000011.1 Salmonella enterica strain PNUSAS361327 SAMN36339285-rid18734393.denovo.13, whole genome shotgun sequence	42081..42917	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTLW010000011.1 Salmonella enterica strain PNUSAS361327 SAMN36339285-rid18734393.denovo.13, whole genome shotgun sequence	42917..43720	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNTLW010000024.1 Salmonella enterica strain PNUSAS361327 SAMN36339285-rid18734393.guided.12, whole genome shotgun sequence	42821..43258	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTLW010000025.1 Salmonella enterica strain PNUSAS361327 SAMN36339285-rid18734393.guided.18, whole genome shotgun sequence	7213..8049	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTLW010000025.1 Salmonella enterica strain PNUSAS361327 SAMN36339285-rid18734393.guided.18, whole genome shotgun sequence	6410..7213	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNTLW010000011.1 Salmonella enterica strain PNUSAS361327 SAMN36339285-rid18734393.denovo.13, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNTLW010000027.1 Salmonella enterica strain PNUSAS361327 SAMN36339285-rid18734393.guided.21, whole genome shotgun sequence	3944..4804	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNTLW010000011.1 Salmonella enterica strain PNUSAS361327 SAMN36339285-rid18734393.denovo.13, whole genome shotgun sequence	43781..44596	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNTLW010000025.1 Salmonella enterica strain PNUSAS361327 SAMN36339285-rid18734393.guided.18, whole genome shotgun sequence	5534..6349	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNTLW010000011.1 Salmonella enterica strain PNUSAS361327 SAMN36339285-rid18734393.denovo.13, whole genome shotgun sequence	48109..49308	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTLW010000025.1 Salmonella enterica strain PNUSAS361327 SAMN36339285-rid18734393.guided.18, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTLW010000012.1 Salmonella enterica strain PNUSAS361327 SAMN36339285-rid18734393.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNTLW010000016.1 Salmonella enterica strain PNUSAS361327 SAMN36339285-rid18734393.denovo.20, whole genome shotgun sequence	3388..3649		enterobacteriales	IncN	100	514 / 514	ABNTLW010000011.1 Salmonella enterica strain PNUSAS361327 SAMN36339285-rid18734393.denovo.13, whole genome shotgun sequence	23798..24311		enterobacteriales	IncX1	98.66	374 / 374	ABNTLW010000013.1 Salmonella enterica strain PNUSAS361327 SAMN36339285-rid18734393.denovo.15, whole genome shotgun sequence	6057..6430																																		avrA	ABNTLW010000002.1	552869..553738	99.54	870	0						
GCA_032642105.1_PDT001810443.1_genomic.fna	Salmonella_enterica	0.5221	496.513 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(AP001918),IncFII	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTLX010000001.1 Salmonella enterica strain PNUSAS361322 SAMN36339006-rid18734383.denovo.01, whole genome shotgun sequence	745686..746123	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNTLX010000026.1 Salmonella enterica strain PNUSAS361322 SAMN36339006-rid18734383.guided.17, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	96.63	682 / 682	ABNTLX010000014.1 Salmonella enterica strain PNUSAS361322 SAMN36339006-rid18734383.denovo.14, whole genome shotgun sequence	50996..51677	enterobacteriales	IncFII	96.18	262 / 261	ABNTLX010000014.1 Salmonella enterica strain PNUSAS361322 SAMN36339006-rid18734383.denovo.14, whole genome shotgun sequence	66009..66268																																																avrA	ABNTLX010000002.1	94986..95855	98.966	870	0						
GCA_032642165.1_PDT001810439.1_genomic.fna	Salmonella_enterica	0.5213	491.139 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTMA010000001.1 Salmonella enterica strain PNUSAS361323 SAMN36338997-rid18734363.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTMA010000028.1 Salmonella enterica strain PNUSAS361323 SAMN36338997-rid18734363.guided.27, whole genome shotgun sequence	193..630	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABNTMA010000020.1 Salmonella enterica strain PNUSAS361323 SAMN36338997-rid18734363.denovo.22, whole genome shotgun sequence	3981..4111	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTMA010000013.1 Salmonella enterica strain PNUSAS361323 SAMN36338997-rid18734363.denovo.13, whole genome shotgun sequence	40532..41174		enterobacteriales	IncFII(S)	100	262 / 262	ABNTMA010000017.1 Salmonella enterica strain PNUSAS361323 SAMN36338997-rid18734363.denovo.19, whole genome shotgun sequence	3385..3646																																									avrA	ABNTMA010000002.1	538525..539394	99.54	870	0						
GCA_032642205.1_PDT001810432.1_genomic.fna	Salmonella_enterica	0.5212	168.113 KB	8	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,blaCMY-2,blaCMY-2	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTMD010000001.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322978 SAMN36340950-rid18734313.denovo.01, whole genome shotgun sequence	645330..645767	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNTMD010000050.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322978 SAMN36340950-rid18734313.denovo.54, whole genome shotgun sequence	555..1370	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	EU722351	aac(6')-Iaa	97.95	438/438	ABNTMD010000071.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322978 SAMN36340950-rid18734313.guided.36, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNTMD010000074.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322978 SAMN36340950-rid18734313.guided.56, whole genome shotgun sequence	1840..2655	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	EU722351	blaCMY-2	100	1146/1146	ABNTMD010000031.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322978 SAMN36340950-rid18734313.denovo.31, whole genome shotgun sequence	5376..6521	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNTMD010000073.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322978 SAMN36340950-rid18734313.guided.43, whole genome shotgun sequence	12852..13997	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNTMD010000031.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322978 SAMN36340950-rid18734313.denovo.31, whole genome shotgun sequence	15504..15645	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNTMD010000073.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322978 SAMN36340950-rid18734313.guided.43, whole genome shotgun sequence	3728..3869																																																avrA	ABNTMD010000002.1	149193..150062	98.966	870	0						
GCA_032642225.1_PDT001810434.1_genomic.fna	Salmonella_enterica	0.522	94.679 KB	15	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTMC010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.denovo.001, whole genome shotgun sequence	571094..571531	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTMC010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.denovo.044, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTMC010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.denovo.044, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNTMC010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.denovo.083, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNTMC010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.denovo.083, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNTMC010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.guided.027, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTMC010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.guided.068, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTMC010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.guided.068, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNTMC010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.guided.091, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNTMC010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.guided.091, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNTMC010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.denovo.093, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNTMC010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.guided.092, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNTMC010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.denovo.087, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTMC010000119.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.guided.088, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNTMC010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.denovo.044, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTMC010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.guided.068, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTMC010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.denovo.044, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTMC010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.guided.057, whole genome shotgun sequence	1098..2297	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNTMC010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323247 SAMN36340959-rid18734333.denovo.066, whole genome shotgun sequence	14022..14581																																																						avrA	ABNTMC010000002.1	81701..82570	99.655	870	0						
GCA_032642245.1_PDT001810431.1_genomic.fna	Salmonella_enterica	0.522	99.468 KB	16	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTME010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.denovo.001, whole genome shotgun sequence	350816..351253	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTME010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.denovo.052, whole genome shotgun sequence	22886..23677	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTME010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.denovo.052, whole genome shotgun sequence	22886..23677	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNTME010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.denovo.088, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNTME010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.denovo.088, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNTME010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.denovo.102, whole genome shotgun sequence	93..908	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin	X62115	aac(6')-Iaa	97.49	438/438	ABNTME010000106.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.guided.055, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTME010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.guided.079, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTME010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.guided.079, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNTME010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.guided.085, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNTME010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.guided.085, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNTME010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.guided.099, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin	X62115	floR	98.19	1214/1215	ABNTME010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.denovo.081, whole genome shotgun sequence	3189..4402	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTME010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.guided.083, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNTME010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.denovo.052, whole genome shotgun sequence	21542..22381	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTME010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.guided.079, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTME010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.denovo.052, whole genome shotgun sequence	7826..9025	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTME010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.guided.080, whole genome shotgun sequence	1581..2780	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNTME010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.denovo.077, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNTME010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.guided.086, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNTME010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323166 SAMN36340971-rid18734303.denovo.035, whole genome shotgun sequence	36941..37500																																																						avrA	ABNTME010000043.1	39430..40299	99.655	870	0						
GCA_032642265.1_PDT001810430.1_genomic.fna	Salmonella_enterica	0.5199	161.062 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNTMF010000009.1 Salmonella enterica strain PNUSAS344854 SAMN36341411-rid18732663.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNTMF010000062.1 Salmonella enterica strain PNUSAS344854 SAMN36341411-rid18732663.guided.42, whole genome shotgun sequence	8117..8551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032642325.1_PDT001810417.1_genomic.fna	Salmonella_enterica	0.5198	76.162 KB	21	aroC_62,dnaN_53,hemD_54,hisD_60*,purE_5,sucA_53,thrA_54	152*	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	99.6007984031936	100	hisD_60*	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTMI010000007.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323188 SAMN36341008-rid18734193.denovo.007, whole genome shotgun sequence	84422..84859	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTMI010000091.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323188 SAMN36341008-rid18734193.denovo.094, whole genome shotgun sequence	6062..6898	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTMI010000091.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323188 SAMN36341008-rid18734193.denovo.094, whole genome shotgun sequence	6898..7701	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNTMI010000151.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323188 SAMN36341008-rid18734193.guided.071, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTMI010000154.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323188 SAMN36341008-rid18734193.guided.124, whole genome shotgun sequence	2310..3146	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTMI010000154.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323188 SAMN36341008-rid18734193.guided.124, whole genome shotgun sequence	1507..2310	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNTMI010000106.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323188 SAMN36341008-rid18734193.denovo.109, whole genome shotgun sequence	2342..3547	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNTMI010000153.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323188 SAMN36341008-rid18734193.guided.115, whole genome shotgun sequence	2373..3578	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNTMI010000082.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323188 SAMN36341008-rid18734193.denovo.084, whole genome shotgun sequence	12006..12687	enterobacteriales	IncFII	96.95	262 / 261	ABNTMI010000091.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323188 SAMN36341008-rid18734193.denovo.094, whole genome shotgun sequence	5178..5439		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNTMI010000100.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323188 SAMN36341008-rid18734193.denovo.103, whole genome shotgun sequence	4522..4663		enterobacteriales	IncX1	100	373 / 373	ABNTMI010000119.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323188 SAMN36341008-rid18734193.denovo.123, whole genome shotgun sequence	2732..3104																																		avrA	ABNTMI010000022.1	39484..40353	99.655	870	0						
GCA_032642345.1_PDT001810416.1_genomic.fna	Salmonella_enterica	0.5221	92.21 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,fosA3,fosA3,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTMJ010000008.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.denovo.008, whole genome shotgun sequence	83738..84175	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTMJ010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.denovo.056, whole genome shotgun sequence	22981..23772	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTMJ010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.denovo.056, whole genome shotgun sequence	22981..23772	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNTMJ010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.denovo.081, whole genome shotgun sequence	1053..2078	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNTMJ010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.denovo.081, whole genome shotgun sequence	48..824	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNTMJ010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.guided.052, whole genome shotgun sequence	14800..15237	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTMJ010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.guided.055, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTMJ010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.guided.055, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNTMJ010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.guided.080, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNTMJ010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.guided.080, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	fosA3	100	417/417	ABNTMJ010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.denovo.088, whole genome shotgun sequence	320..736	Fosfomycin	AB522970	fosA3	100	417/417	ABNTMJ010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.guided.087, whole genome shotgun sequence	361..777	Fosfomycin	AB522970	floR	98.19	1214/1215	ABNTMJ010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.denovo.078, whole genome shotgun sequence	2843..4056	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTMJ010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.guided.079, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNTMJ010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.denovo.056, whole genome shotgun sequence	21637..22476	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTMJ010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.guided.055, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTMJ010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.denovo.056, whole genome shotgun sequence	7921..9120	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTMJ010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.guided.055, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNTMJ010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323189 SAMN36341011-rid18734183.denovo.066, whole genome shotgun sequence	14638..15197																																																						avrA	ABNTMJ010000026.1	39693..40562	99.655	870	0						
GCA_032643125.1_PDT001810279.1_genomic.fna	Salmonella_enterica	0.521	127.097 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNTNX010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323190 SAMN36341014-rid18733073.denovo.001, whole genome shotgun sequence	52321..52758	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNTNX010000103.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323190 SAMN36341014-rid18733073.guided.051, whole genome shotgun sequence	18847..19284	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNTNX010000049.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323190 SAMN36341014-rid18733073.denovo.050, whole genome shotgun sequence	14271..15416	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNTNX010000104.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323190 SAMN36341014-rid18733073.guided.057, whole genome shotgun sequence	13901..15046	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNTNX010000067.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323190 SAMN36341014-rid18733073.denovo.071, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNTNX010000106.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323190 SAMN36341014-rid18733073.guided.072, whole genome shotgun sequence	3114..3929	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNTNX010000067.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323190 SAMN36341014-rid18733073.denovo.071, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTNX010000106.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323190 SAMN36341014-rid18733073.guided.072, whole genome shotgun sequence	6106..7305	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNTNX010000071.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323190 SAMN36341014-rid18733073.denovo.076, whole genome shotgun sequence	1326..1445	enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNTNX010000075.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323190 SAMN36341014-rid18733073.denovo.080, whole genome shotgun sequence	371..501		enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNTNX010000076.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323190 SAMN36341014-rid18733073.denovo.081, whole genome shotgun sequence	3134..3264		enterobacteriales	IncC	100	417 / 417	ABNTNX010000034.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323190 SAMN36341014-rid18733073.denovo.035, whole genome shotgun sequence	38349..38765																																		avrA	ABNTNX010000016.1	102351..103220	99.885	870	0						
GCA_032643205.1_PDT001810259.1_genomic.fna	Salmonella_enterica	0.5218	324.861 KB	5	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTOB010000001.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322975 SAMN36340930-rid18732913.denovo.01, whole genome shotgun sequence	745219..745656	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTOB010000032.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322975 SAMN36340930-rid18732913.denovo.35, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNTOB010000032.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322975 SAMN36340930-rid18732913.denovo.35, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNTOB010000032.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322975 SAMN36340930-rid18732913.denovo.35, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNTOB010000032.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322975 SAMN36340930-rid18732913.denovo.35, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNTOB010000032.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322975 SAMN36340930-rid18732913.denovo.35, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNTOB010000049.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322975 SAMN36340930-rid18732913.guided.17, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTOB010000052.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322975 SAMN36340930-rid18732913.guided.36, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNTOB010000052.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322975 SAMN36340930-rid18732913.guided.36, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNTOB010000052.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322975 SAMN36340930-rid18732913.guided.36, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNTOB010000052.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322975 SAMN36340930-rid18732913.guided.36, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNTOB010000052.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322975 SAMN36340930-rid18732913.guided.36, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNTOB010000033.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322975 SAMN36340930-rid18732913.denovo.38, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTOB010000053.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322975 SAMN36340930-rid18732913.guided.37, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNTOB010000034.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322975 SAMN36340930-rid18732913.denovo.39, whole genome shotgun sequence	4021..4151																																																						avrA	ABNTOB010000002.1	573260..574129	99.655	870	0						
GCA_032643245.1_PDT001810258.1_genomic.fna	Salmonella_enterica	0.5219	191.106 KB	11	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTOD010000007.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323139 SAMN36340958-rid18732333.denovo.07, whole genome shotgun sequence	56163..56600	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNTOD010000053.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12323139 SAMN36340958-rid18732333.guided.40, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTOD010000003.1	174314..175183	99.77	870	0						
GCA_032643285.1_PDT001810255.1_genomic.fna	Salmonella_enterica	0.5221	155.571 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTOF010000007.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322974 SAMN36340929-rid18732883.denovo.07, whole genome shotgun sequence	175726..176163	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTOF010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322974 SAMN36340929-rid18732883.denovo.38, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTOF010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322974 SAMN36340929-rid18732883.denovo.38, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNTOF010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322974 SAMN36340929-rid18732883.guided.33, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTOF010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322974 SAMN36340929-rid18732883.guided.50, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTOF010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322974 SAMN36340929-rid18732883.guided.50, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNTOF010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322974 SAMN36340929-rid18732883.denovo.38, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTOF010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322974 SAMN36340929-rid18732883.guided.50, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTOF010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322974 SAMN36340929-rid18732883.denovo.38, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTOF010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322974 SAMN36340929-rid18732883.guided.58, whole genome shotgun sequence	1877..3076	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNTOF010000030.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322974 SAMN36340929-rid18732883.denovo.30, whole genome shotgun sequence	36931..37490																																																						avrA	ABNTOF010000006.1	149829..150698	99.655	870	0						
GCA_032643305.1_PDT001810254.1_genomic.fna	Salmonella_enterica	0.5223	65.397 KB	21	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTOG010000050.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323167 SAMN36340963-rid18732873.denovo.050, whole genome shotgun sequence	16064..16501	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTOG010000137.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323167 SAMN36340963-rid18732873.guided.079, whole genome shotgun sequence	14158..14595	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTOG010000104.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323167 SAMN36340963-rid18732873.denovo.107, whole genome shotgun sequence	945..1587	enterobacteriales	IncFII(S)	100	262 / 262	ABNTOG010000091.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323167 SAMN36340963-rid18732873.denovo.094, whole genome shotgun sequence	3197..3458																																																avrA	ABNTOG010000038.1	43598..44467	99.54	870	0						
GCA_032643325.1_PDT001810252.1_genomic.fna	Salmonella_enterica	0.5195	59.167 KB	26	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTOJ010000022.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313417 SAMN36340632-rid18732863.denovo.022, whole genome shotgun sequence	12510..12947	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTOJ010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313417 SAMN36340632-rid18732863.denovo.055, whole genome shotgun sequence	4547..5383	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNTOJ010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313417 SAMN36340632-rid18732863.denovo.055, whole genome shotgun sequence	3745..4547	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNTOJ010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313417 SAMN36340632-rid18732863.denovo.055, whole genome shotgun sequence	3744..4547	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNTOJ010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313417 SAMN36340632-rid18732863.denovo.055, whole genome shotgun sequence	3744..4547	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNTOJ010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313417 SAMN36340632-rid18732863.denovo.055, whole genome shotgun sequence	3744..4547	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNTOJ010000204.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313417 SAMN36340632-rid18732863.guided.071, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTOJ010000206.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313417 SAMN36340632-rid18732863.guided.114, whole genome shotgun sequence	3839..4675	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNTOJ010000206.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313417 SAMN36340632-rid18732863.guided.114, whole genome shotgun sequence	3037..3839	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNTOJ010000206.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313417 SAMN36340632-rid18732863.guided.114, whole genome shotgun sequence	3036..3839	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNTOJ010000206.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313417 SAMN36340632-rid18732863.guided.114, whole genome shotgun sequence	3036..3839	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNTOJ010000206.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313417 SAMN36340632-rid18732863.guided.114, whole genome shotgun sequence	3036..3839	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNTOJ010000081.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313417 SAMN36340632-rid18732863.denovo.084, whole genome shotgun sequence	2692..3018	enterobacteriales	IncHI2A	99.52	630 / 630	ABNTOJ010000136.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313417 SAMN36340632-rid18732863.denovo.140, whole genome shotgun sequence	546..1175		enterobacteriales	IncX1	100	373 / 373	ABNTOJ010000156.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313417 SAMN36340632-rid18732863.denovo.160, whole genome shotgun sequence	1156..1528																																									avrA	ABNTOJ010000041.1	39484..40353	99.655	870	0						
GCA_032643345.1_PDT001810253.1_genomic.fna	Salmonella_enterica	0.5219	93.622 KB	15	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTOH010000038.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323168 SAMN36340966-rid18732323.denovo.040, whole genome shotgun sequence	20243..20680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTOH010000112.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323168 SAMN36340966-rid18732323.guided.039, whole genome shotgun sequence	14153..14590	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNTOH010000003.1	174843..175712	99.54	870	0						
GCA_032643365.1_PDT001810250.1_genomic.fna	Salmonella_enterica	0.5206	206.862 KB	8	aroC_92,dnaN_125,hemD_78,hisD_128,purE_138,sucA_9,thrA_141	463	3,10:e,h:l,w	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_92	dnaN	100	100	dnaN_125	hemD	100	100	hemD_78	hisD	100	100	hisD_128	purE	100	100	purE_138	sucA	100	100	sucA_9	thrA	100	100	thrA_141	3,10	e,h	l,w	Salmonella enterica subspecies enterica (subspecies I)	Meleagridis		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNTOI010000001.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12323131 SAMN36340945-rid18732843.denovo.01, whole genome shotgun sequence	390313..390750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNTOI010000051.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12323131 SAMN36340945-rid18732843.guided.26, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNTOI010000004.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12323131 SAMN36340945-rid18732843.denovo.04, whole genome shotgun sequence	160102..160524	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNTOI010000053.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12323131 SAMN36340945-rid18732843.guided.37, whole genome shotgun sequence	21554..21976	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTOI010000005.1	151715..152584	98.851	870	0						
GCA_032643385.1_PDT001810256.1_genomic.fna	Salmonella_enterica	0.5232	60.177 KB	26	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNTOE010000023.1 Salmonella enterica subsp. enterica serovar Panama strain FSIS22313410 SAMN36340627-rid18732893.denovo.023, whole genome shotgun sequence	11319..11756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNTOE010000150.1 Salmonella enterica subsp. enterica serovar Panama strain FSIS22313410 SAMN36340627-rid18732893.guided.072, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTOE010000022.1	61553..62422	98.966	870	0						
GCA_032643405.1_PDT001810248.1_genomic.fna	Salmonella_enterica	0.5221	133.976 KB	12	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	Col440I,ColpVC,IncFII(p96A),IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTOL010000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322973 SAMN36340910-rid18732823.denovo.04, whole genome shotgun sequence	58800..59237	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTOL010000097.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322973 SAMN36340910-rid18732823.guided.45, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABNTOL010000054.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322973 SAMN36340910-rid18732823.denovo.58, whole genome shotgun sequence	2246..2354	enterobacteriales	ColpVC	98.96	193 / 193	ABNTOL010000059.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322973 SAMN36340910-rid18732823.denovo.63, whole genome shotgun sequence	805..997		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNTOL010000033.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322973 SAMN36340910-rid18732823.denovo.33, whole genome shotgun sequence	15755..16288		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNTOL010000052.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322973 SAMN36340910-rid18732823.denovo.56, whole genome shotgun sequence	249..390																																													
GCA_032643425.1_PDT001810247.1_genomic.fna	Salmonella_enterica	0.5222	297.981 KB	6	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNTOM010000001.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323132 SAMN36340949-rid18732813.denovo.01, whole genome shotgun sequence	389072..389509	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNTOM010000040.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12323132 SAMN36340949-rid18732813.guided.29, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTOM010000006.1	211439..212307	99.655	869	0						
GCA_032643445.1_PDT001810242.1_genomic.fna	Salmonella_enterica	0.5212	65.742 KB	25	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	5	aac(6')-Iaa,aadA7,aadA7,aac(6')-Iaa,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTOO010000007.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313452 SAMN36340635-rid18732773.denovo.007, whole genome shotgun sequence	84465..84902	Amikacin, Tobramycin	NC_003197	aadA7	99	798/798	ABNTOO010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313452 SAMN36340635-rid18732773.denovo.021, whole genome shotgun sequence	24767..25564	Spectinomycin, Streptomycin	AF224733	aadA7	99	798/798	ABNTOO010000176.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313452 SAMN36340635-rid18732773.guided.098, whole genome shotgun sequence	2925..3722	Spectinomycin, Streptomycin	AF224733	aac(6')-Iaa	97.95	438/438	ABNTOO010000177.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313452 SAMN36340635-rid18732773.guided.099, whole genome shotgun sequence	7962..8399	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNTOO010000054.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313452 SAMN36340635-rid18732773.denovo.054, whole genome shotgun sequence	17968..18390	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNTOO010000174.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313452 SAMN36340635-rid18732773.guided.075, whole genome shotgun sequence	16565..16987	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNTOO010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313452 SAMN36340635-rid18732773.denovo.021, whole genome shotgun sequence	26069..26908	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTOO010000176.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313452 SAMN36340635-rid18732773.guided.098, whole genome shotgun sequence	4227..5066	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTOO010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313452 SAMN36340635-rid18732773.denovo.021, whole genome shotgun sequence	36204..37403	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTOO010000178.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313452 SAMN36340635-rid18732773.guided.121, whole genome shotgun sequence	1443..2642	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTOO010000018.1	67023..67892	99.195	870	0						
GCA_032643465.1_PDT001810244.1_genomic.fna	Salmonella_enterica	0.5204	107.125 KB	15	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	5	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNTON010000001.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322976 SAMN36340931-rid18732783.denovo.01, whole genome shotgun sequence	71213..71650	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNTON010000046.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322976 SAMN36340931-rid18732783.denovo.48, whole genome shotgun sequence	22110..22889	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABNTON010000086.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322976 SAMN36340931-rid18732783.guided.47, whole genome shotgun sequence	22141..22920	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	98.17	438/438	ABNTON010000087.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322976 SAMN36340931-rid18732783.guided.49, whole genome shotgun sequence	16421..16858	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNTON010000007.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322976 SAMN36340931-rid18732783.denovo.07, whole genome shotgun sequence	137947..138369	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNTON010000088.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322976 SAMN36340931-rid18732783.guided.53, whole genome shotgun sequence	18605..19027	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNTON010000046.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322976 SAMN36340931-rid18732783.denovo.48, whole genome shotgun sequence	23394..24233	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTON010000086.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322976 SAMN36340931-rid18732783.guided.47, whole genome shotgun sequence	23425..24264	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTON010000057.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322976 SAMN36340931-rid18732783.denovo.62, whole genome shotgun sequence	6632..7831	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTON010000090.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322976 SAMN36340931-rid18732783.guided.68, whole genome shotgun sequence	2009..3208	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTON010000005.1	104865..105734	99.655	870	0						
GCA_032643485.1_PDT001810241.1_genomic.fna	Salmonella_enterica	0.5216	135.547 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTOP010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323169 SAMN36340969-rid18732763.denovo.01, whole genome shotgun sequence	477818..478255	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTOP010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323169 SAMN36340969-rid18732763.denovo.39, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTOP010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323169 SAMN36340969-rid18732763.denovo.39, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNTOP010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323169 SAMN36340969-rid18732763.guided.49, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTOP010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323169 SAMN36340969-rid18732763.guided.58, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTOP010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323169 SAMN36340969-rid18732763.guided.58, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNTOP010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323169 SAMN36340969-rid18732763.denovo.39, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTOP010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323169 SAMN36340969-rid18732763.guided.58, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTOP010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323169 SAMN36340969-rid18732763.denovo.39, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTOP010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323169 SAMN36340969-rid18732763.guided.54, whole genome shotgun sequence	4032..5231	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNTOP010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12323169 SAMN36340969-rid18732763.denovo.53, whole genome shotgun sequence	10365..10924																																																						avrA	ABNTOP010000036.1	39536..40405	99.655	870	0						
GCA_032643505.1_PDT001810240.1_genomic.fna	Salmonella_enterica	0.5206	386.941 KB	4	aroC_7,dnaN_107,hemD_79,hisD_235,purE_192,sucA_193,thrA_105	647	45:m,t:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_7	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_235	purE	100	100	purE_192	sucA	100	100	sucA_193	thrA	100	100	thrA_105	45	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Apapa		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNTOQ010000003.1 Salmonella enterica subsp. enterica serovar Apapa strain FSIS12322977 SAMN36340932-rid18732753.denovo.03, whole genome shotgun sequence	475215..475652	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNTOQ010000033.1 Salmonella enterica subsp. enterica serovar Apapa strain FSIS12322977 SAMN36340932-rid18732753.guided.16, whole genome shotgun sequence	12442..12879	Amikacin, Tobramycin	NC_003197	fosA7	95.98	423/423	ABNTOQ010000002.1 Salmonella enterica subsp. enterica serovar Apapa strain FSIS12322977 SAMN36340932-rid18732753.denovo.02, whole genome shotgun sequence	400460..400881	Fosfomycin	LAPJ01000014	fosA7	95.98	423/423	ABNTOQ010000036.1 Salmonella enterica subsp. enterica serovar Apapa strain FSIS12322977 SAMN36340932-rid18732753.guided.26, whole genome shotgun sequence	4337..4758	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.74	114 / 114	ABNTOQ010000023.1 Salmonella enterica subsp. enterica serovar Apapa strain FSIS12322977 SAMN36340932-rid18732753.denovo.27, whole genome shotgun sequence	332..445																																																						avrA	ABNTOQ010000001.1	179669..180538	99.655	870	0						
GCA_032643545.1_PDT001810249.1_genomic.fna	Salmonella_enterica	0.5199	189.673 KB	10	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:g,m,s:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	g,m,s	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Lubbock		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTOK010000005.1 Salmonella enterica subsp. enterica serovar Lubbock strain FSIS12322979 SAMN36340951-rid18732833.denovo.05, whole genome shotgun sequence	86619..87056	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTOK010000082.1 Salmonella enterica subsp. enterica serovar Lubbock strain FSIS12322979 SAMN36340951-rid18732833.guided.20, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTOK010000009.1	107412..108281	99.195	870	0						
GCA_032643585.1_PDT001793833.1_genomic.fna	Salmonella_enterica	0.5216	213.026 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	Col8282	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTOT010000001.1 Salmonella enterica strain PNUSAS359394 SAMN36073281-rid18576923.denovo.01, whole genome shotgun sequence	458966..459403	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTOT010000036.1 Salmonella enterica strain PNUSAS359394 SAMN36073281-rid18576923.denovo.41, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTOT010000036.1 Salmonella enterica strain PNUSAS359394 SAMN36073281-rid18576923.denovo.41, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNTOT010000050.1 Salmonella enterica strain PNUSAS359394 SAMN36073281-rid18576923.guided.31, whole genome shotgun sequence	18588..19025	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	809/837	ABNTOT010000054.1 Salmonella enterica strain PNUSAS359394 SAMN36073281-rid18576923.guided.40, whole genome shotgun sequence	3582..4390	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTOT010000054.1 Salmonella enterica strain PNUSAS359394 SAMN36073281-rid18576923.guided.40, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNTOT010000055.1 Salmonella enterica strain PNUSAS359394 SAMN36073281-rid18576923.guided.46, whole genome shotgun sequence	1179..2015	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTOT010000055.1 Salmonella enterica strain PNUSAS359394 SAMN36073281-rid18576923.guided.46, whole genome shotgun sequence	376..1179	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNTOT010000041.1 Salmonella enterica strain PNUSAS359394 SAMN36073281-rid18576923.denovo.48, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNTOT010000056.1 Salmonella enterica strain PNUSAS359394 SAMN36073281-rid18576923.guided.47, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNTOT010000036.1 Salmonella enterica strain PNUSAS359394 SAMN36073281-rid18576923.denovo.41, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNTOT010000054.1 Salmonella enterica strain PNUSAS359394 SAMN36073281-rid18576923.guided.40, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNTOT010000032.1 Salmonella enterica strain PNUSAS359394 SAMN36073281-rid18576923.denovo.34, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNTOT010000051.1 Salmonella enterica strain PNUSAS359394 SAMN36073281-rid18576923.guided.33, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col8282	90.1	202 / 207	ABNTOT010000037.1 Salmonella enterica strain PNUSAS359394 SAMN36073281-rid18576923.denovo.42, whole genome shotgun sequence	191..392																																																						avrA	ABNTOT010000002.1	588488..589357	99.885	870	0						
GCA_032644265.1_PDT001793752.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTOU010000001.1 Salmonella enterica strain PNUSAS359693 SAMN36073267-rid18576493.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTOU010000022.1 Salmonella enterica strain PNUSAS359693 SAMN36073267-rid18576493.guided.17, whole genome shotgun sequence	5914..6351	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTOU010000011.1 Salmonella enterica strain PNUSAS359693 SAMN36073267-rid18576493.denovo.11, whole genome shotgun sequence	40535..41177	enterobacteriales	IncFII(S)	100	262 / 262	ABNTOU010000015.1 Salmonella enterica strain PNUSAS359693 SAMN36073267-rid18576493.denovo.16, whole genome shotgun sequence	3297..3558																																																avrA	ABNTOU010000002.1	553636..554505	99.54	870	0						
GCA_032644285.1_PDT001793733.1_genomic.fna	Salmonella_enterica	0.52	94.023 KB	18	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTOW010000010.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323049 SAMN36074040-rid18781933.denovo.010, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTOW010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323049 SAMN36074040-rid18781933.denovo.076, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNTOW010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323049 SAMN36074040-rid18781933.denovo.076, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNTOW010000130.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323049 SAMN36074040-rid18781933.guided.057, whole genome shotgun sequence	15167..15604	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTOW010000133.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323049 SAMN36074040-rid18781933.guided.088, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNTOW010000133.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323049 SAMN36074040-rid18781933.guided.088, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNTOW010000092.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323049 SAMN36074040-rid18781933.denovo.096, whole genome shotgun sequence	2286..3491	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNTOW010000134.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323049 SAMN36074040-rid18781933.guided.098, whole genome shotgun sequence	1981..3186	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNTOW010000089.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323049 SAMN36074040-rid18781933.denovo.093, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNTOW010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323049 SAMN36074040-rid18781933.denovo.076, whole genome shotgun sequence	5800..6061		enterobacteriales	IncFII	96.95	262 / 261	ABNTOW010000133.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323049 SAMN36074040-rid18781933.guided.088, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNTOW010000068.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323049 SAMN36074040-rid18781933.denovo.070, whole genome shotgun sequence	5664..5805		enterobacteriales	IncX1	100	373 / 373	ABNTOW010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12323049 SAMN36074040-rid18781933.denovo.103, whole genome shotgun sequence	2153..2525																											avrA	ABNTOW010000037.1	39484..40353	99.655	870	0						
GCA_032644325.1_PDT001793746.1_genomic.fna	Salmonella_enterica	0.5148	221.756 KB	7	aroC_235,dnaN_25,hemD_28,hisD_24,purE_237,sucA_26,thrA_78	869	18:z4,z23:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_235	dnaN	100	100	dnaN_25	hemD	100	100	hemD_28	hisD	100	100	hisD_24	purE	100	100	purE_237	sucA	100	100	sucA_26	thrA	100	100	thrA_78	18	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 18:z4,z23:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032644665.1_PDT001793706.1_genomic.fna	Salmonella_enterica	0.5216	713.469 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNTPO010000001.1 Salmonella enterica strain PNUSAS359550 SAMN36073153-rid18575183.denovo.01, whole genome shotgun sequence	717301..717738	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNTPO010000016.1 Salmonella enterica strain PNUSAS359550 SAMN36073153-rid18575183.guided.13, whole genome shotgun sequence	2893..3330	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTPO010000003.1	563556..564425	99.77	870	0						
GCA_032644685.1_PDT001793696.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTPQ010000001.1 Salmonella enterica strain PNUSAS359688 SAMN36073268-rid18576323.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTPQ010000021.1 Salmonella enterica strain PNUSAS359688 SAMN36073268-rid18576323.guided.15, whole genome shotgun sequence	7632..8069	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTPQ010000011.1 Salmonella enterica strain PNUSAS359688 SAMN36073268-rid18576323.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNTPQ010000014.1 Salmonella enterica strain PNUSAS359688 SAMN36073268-rid18576323.denovo.17, whole genome shotgun sequence	3392..3653																																																avrA	ABNTPQ010000002.1	553636..554505	99.54	870	0						
GCA_032644705.1_PDT001793704.1_genomic.fna	Salmonella_enterica	0.5219	422 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTPP010000001.1 Salmonella enterica strain PNUSAS359392 SAMN36073283-rid18575173.denovo.01, whole genome shotgun sequence	394740..395177	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTPP010000029.1 Salmonella enterica strain PNUSAS359392 SAMN36073283-rid18575173.guided.24, whole genome shotgun sequence	11914..12351	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTPP010000009.1	140203..141071	99.195	870	0						
GCA_032644725.1_PDT001793692.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTPR010000001.1 Salmonella enterica strain PNUSAS359692 SAMN36073271-rid18781783.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTPR010000023.1 Salmonella enterica strain PNUSAS359692 SAMN36073271-rid18781783.guided.18, whole genome shotgun sequence	5043..5480	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTPR010000011.1 Salmonella enterica strain PNUSAS359692 SAMN36073271-rid18781783.denovo.12, whole genome shotgun sequence	40499..41141	enterobacteriales	IncFII(S)	100	262 / 262	ABNTPR010000015.1 Salmonella enterica strain PNUSAS359692 SAMN36073271-rid18781783.denovo.17, whole genome shotgun sequence	2959..3220																																																avrA	ABNTPR010000002.1	553636..554505	99.54	870	0						
GCA_032644785.1_PDT001793689.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTPS010000001.1 Salmonella enterica strain PNUSAS359696 SAMN36073253-rid18781773.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTPS010000023.1 Salmonella enterica strain PNUSAS359696 SAMN36073253-rid18781773.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTPS010000014.1 Salmonella enterica strain PNUSAS359696 SAMN36073253-rid18781773.denovo.16, whole genome shotgun sequence	15198..15840	enterobacteriales	IncFII(S)	100	262 / 262	ABNTPS010000016.1 Salmonella enterica strain PNUSAS359696 SAMN36073253-rid18781773.denovo.19, whole genome shotgun sequence	3368..3629																																																avrA	ABNTPS010000002.1	553636..554505	99.54	870	0						
GCA_032644805.1_PDT001793687.1_genomic.fna	Salmonella_enterica	0.5211	214.682 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTPV010000001.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTPV010000024.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.denovo.27, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTPV010000024.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.denovo.27, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNTPV010000031.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.denovo.35, whole genome shotgun sequence	4657..5682	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNTPV010000031.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.denovo.35, whole genome shotgun sequence	5911..6687	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNTPV010000045.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.guided.15, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTPV010000049.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.guided.41, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTPV010000049.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.guided.41, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNTPV010000050.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.guided.43, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNTPV010000050.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.guided.43, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNTPV010000036.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.denovo.40, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTPV010000051.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.guided.45, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNTPV010000024.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.denovo.27, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTPV010000049.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.guided.41, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTPV010000024.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.denovo.27, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTPV010000048.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.guided.32, whole genome shotgun sequence	4114..5313	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNTPV010000027.1 Salmonella enterica strain PNUSAS359644 SAMN36073172-rid18781753.denovo.30, whole genome shotgun sequence	9109..9668																																																						avrA	ABNTPV010000002.1	149828..150697	99.655	870	0						
GCA_032644865.1_PDT001793665.1_genomic.fna	Salmonella_enterica	0.5203	490.115 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTPY010000001.1 Salmonella enterica strain PNUSAS359593 SAMN36073126-rid18576203.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTPY010000024.1 Salmonella enterica strain PNUSAS359593 SAMN36073126-rid18576203.guided.14, whole genome shotgun sequence	11175..11612	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTPY010000012.1 Salmonella enterica strain PNUSAS359593 SAMN36073126-rid18576203.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNTPY010000016.1 Salmonella enterica strain PNUSAS359593 SAMN36073126-rid18576203.denovo.19, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	98.93	374 / 374	ABNTPY010000013.1 Salmonella enterica strain PNUSAS359593 SAMN36073126-rid18576203.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNTPY010000002.1	553690..554559	99.54	870	0						
GCA_032644885.1_PDT001793680.1_genomic.fna	Salmonella_enterica	0.5219	406.326 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTPX010000001.1 Salmonella enterica strain PNUSAS359622 SAMN36072467-rid18576263.denovo.01, whole genome shotgun sequence	210088..210525	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTPX010000041.1 Salmonella enterica strain PNUSAS359622 SAMN36072467-rid18576263.guided.29, whole genome shotgun sequence	650..1087	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTPX010000016.1 Salmonella enterica strain PNUSAS359622 SAMN36072467-rid18576263.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNTPX010000016.1 Salmonella enterica strain PNUSAS359622 SAMN36072467-rid18576263.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNTPX010000002.1	553636..554505	99.54	870	0						
GCA_032644905.1_PDT001793655.1_genomic.fna	Salmonella_enterica	0.5217	88.491 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTQA010000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323046 SAMN36074034-rid18781743.denovo.004, whole genome shotgun sequence	56354..56791	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNTQA010000114.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323046 SAMN36074034-rid18781743.guided.062, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNTQA010000089.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323046 SAMN36074034-rid18781743.denovo.093, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNTQA010000117.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323046 SAMN36074034-rid18781743.guided.092, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNTQA010000089.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323046 SAMN36074034-rid18781743.denovo.093, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNTQA010000117.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12323046 SAMN36074034-rid18781743.guided.092, whole genome shotgun sequence	2517..2647																																																avrA	ABNTQA010000001.1	108068..108936	99.77	870	0						
GCA_032644925.1_PDT001793659.1_genomic.fna	Salmonella_enterica	0.5232	77.395 KB	22	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTPZ010000029.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323047 SAMN36074036-rid18575163.denovo.029, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTPZ010000082.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323047 SAMN36074036-rid18575163.denovo.085, whole genome shotgun sequence	7945..8781	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNTPZ010000082.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323047 SAMN36074036-rid18575163.denovo.085, whole genome shotgun sequence	8781..9583	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNTPZ010000082.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323047 SAMN36074036-rid18575163.denovo.085, whole genome shotgun sequence	8781..9584	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNTPZ010000082.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323047 SAMN36074036-rid18575163.denovo.085, whole genome shotgun sequence	8781..9584	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNTPZ010000082.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323047 SAMN36074036-rid18575163.denovo.085, whole genome shotgun sequence	8781..9584	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNTPZ010000115.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323047 SAMN36074036-rid18575163.guided.075, whole genome shotgun sequence	2598..3035	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTPZ010000120.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323047 SAMN36074036-rid18575163.guided.099, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNTPZ010000120.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323047 SAMN36074036-rid18575163.guided.099, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNTPZ010000120.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323047 SAMN36074036-rid18575163.guided.099, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNTPZ010000120.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323047 SAMN36074036-rid18575163.guided.099, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNTPZ010000120.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323047 SAMN36074036-rid18575163.guided.099, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNTPZ010000082.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323047 SAMN36074036-rid18575163.denovo.085, whole genome shotgun sequence	1053..2252	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTPZ010000118.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323047 SAMN36074036-rid18575163.guided.095, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNTPZ010000119.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12323047 SAMN36074036-rid18575163.guided.096, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTPZ010000009.1	114415..115284	99.655	870	0						
GCA_032644945.1_PDT001793649.1_genomic.fna	Salmonella_enterica	0.5223	213.213 KB	8	aroC_14,dnaN_112,hemD_8,hisD_123,purE_350,sucA_115,thrA_120	3548	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_8	hisD	100	100	hisD_123	purE	100	100	purE_350	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNTQB010000001.1 Salmonella enterica strain FDA1227878-C001-001 SAMN36073256-rid18575153.denovo.01, whole genome shotgun sequence	378508..378945	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNTQB010000041.1 Salmonella enterica strain FDA1227878-C001-001 SAMN36073256-rid18575153.guided.31, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNTQB010000025.1 Salmonella enterica strain FDA1227878-C001-001 SAMN36073256-rid18575153.denovo.25, whole genome shotgun sequence	17193..17726																																																						avrA	ABNTQB010000011.1	94931..95800	99.425	870	0						
GCA_032644965.1_PDT001793654.1_genomic.fna	Salmonella_enterica	0.5217	341.196 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNTQC010000003.1 Salmonella enterica strain PNUSAS359590 SAMN36073125-rid18576173.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNTQC010000037.1 Salmonella enterica strain PNUSAS359590 SAMN36073125-rid18576173.guided.29, whole genome shotgun sequence	3637..4074	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNTQC010000016.1 Salmonella enterica strain PNUSAS359590 SAMN36073125-rid18576173.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNTQC010000016.1 Salmonella enterica strain PNUSAS359590 SAMN36073125-rid18576173.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABNTQC010000005.1	175698..176566	100	869	0						
GCA_032644985.1_PDT001793650.1_genomic.fna	Salmonella_enterica	0.5209	341.375 KB	6	aroC_10,dnaN_7,hemD_12*,hisD_9,purE_5,sucA_412,thrA_2	Unknown	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	99.7685185185185	100	hemD_12*	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_412	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNTQD010000004.1 Salmonella enterica strain PNUSAS359626 SAMN36072465-rid18781733.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNTQD010000036.1 Salmonella enterica strain PNUSAS359626 SAMN36072465-rid18781733.guided.14, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNTQD010000015.1 Salmonella enterica strain PNUSAS359626 SAMN36072465-rid18781733.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNTQD010000015.1 Salmonella enterica strain PNUSAS359626 SAMN36072465-rid18781733.denovo.16, whole genome shotgun sequence	30407..30668		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNTQD010000016.1 Salmonella enterica strain PNUSAS359626 SAMN36072465-rid18781733.denovo.17, whole genome shotgun sequence	76743..76884																																									avrA	ABNTQD010000001.1	446666..447534	100	869	0						
GCA_032645005.1_PDT001793648.1_genomic.fna	Salmonella_enterica	0.5217	731.648 KB	3	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTQE010000002.1 Salmonella enterica strain PNUSAS359592 SAMN36072605-rid18781723.denovo.02, whole genome shotgun sequence	624511..624948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTQE010000019.1 Salmonella enterica strain PNUSAS359592 SAMN36072605-rid18781723.guided.14, whole genome shotgun sequence	16451..16888	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032645025.1_PDT001793643.1_genomic.fna	Salmonella_enterica	0.5218	274.207 KB	6	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTQG010000001.1 Salmonella enterica strain PNUSAS359585 SAMN36073111-rid18576123.denovo.01, whole genome shotgun sequence	368587..369024	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNTQG010000043.1 Salmonella enterica strain PNUSAS359585 SAMN36073111-rid18576123.guided.33, whole genome shotgun sequence	4113..4550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032645045.1_PDT001793647.1_genomic.fna	Salmonella_enterica	0.5215	127.215 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTQF010000002.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323042 SAMN36073300-rid18781713.denovo.02, whole genome shotgun sequence	50900..51337	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTQF010000079.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323042 SAMN36073300-rid18781713.guided.29, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTQF010000052.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323042 SAMN36073300-rid18781713.denovo.55, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNTQF010000057.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12323042 SAMN36073300-rid18781713.denovo.60, whole genome shotgun sequence	3397..3658																																																avrA	ABNTQF010000004.1	174827..175696	99.54	870	0						
GCA_032645065.1_PDT001793624.1_genomic.fna	Salmonella_enterica	0.5213	478.48 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTQH010000001.1 Salmonella enterica strain PNUSAS359583 SAMN36073109-rid18576003.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTQH010000025.1 Salmonella enterica strain PNUSAS359583 SAMN36073109-rid18576003.guided.16, whole genome shotgun sequence	26729..27166	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTQH010000013.1 Salmonella enterica strain PNUSAS359583 SAMN36073109-rid18576003.denovo.13, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABNTQH010000017.1 Salmonella enterica strain PNUSAS359583 SAMN36073109-rid18576003.denovo.20, whole genome shotgun sequence	3400..3661																																																avrA	ABNTQH010000002.1	553678..554547	99.54	870	0						
GCA_032645085.1_PDT001927002.1_genomic.fna	Salmonella_enterica	0.5212	261.23 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTQK010000003.1 Salmonella enterica strain PNUSAS390607 SAMN37805562-rid19698993.denovo.03, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTQK010000043.1 Salmonella enterica strain PNUSAS390607 SAMN37805562-rid19698993.guided.31, whole genome shotgun sequence	4441..4878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNTQK010000023.1 Salmonella enterica strain PNUSAS390607 SAMN37805562-rid19698993.denovo.23, whole genome shotgun sequence	34958..35491																																																						avrA	ABNTQK010000009.1	187383..188252	99.54	870	0						
GCA_032645105.1_PDT001793623.1_genomic.fna	Salmonella_enterica	0.5208	381.28 KB	5	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	2	ColpVC,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNTQI010000003.1 Salmonella enterica strain PNUSAS359591 SAMN36072598-rid18575993.denovo.03, whole genome shotgun sequence	145261..145698	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNTQI010000028.1 Salmonella enterica strain PNUSAS359591 SAMN36072598-rid18575993.guided.21, whole genome shotgun sequence	8357..8794	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABNTQI010000010.1 Salmonella enterica strain PNUSAS359591 SAMN36072598-rid18575993.denovo.10, whole genome shotgun sequence	166241..166663	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNTQI010000031.1 Salmonella enterica strain PNUSAS359591 SAMN36072598-rid18575993.guided.25, whole genome shotgun sequence	599..1021	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNTQI010000022.1 Salmonella enterica strain PNUSAS359591 SAMN36072598-rid18575993.denovo.26, whole genome shotgun sequence	805..997	enterobacteriales	IncX1	98.93	374 / 374	ABNTQI010000019.1 Salmonella enterica strain PNUSAS359591 SAMN36072598-rid18575993.denovo.19, whole genome shotgun sequence	32345..32718																																																avrA	ABNTQI010000001.1	518328..519197	99.54	870	0						
GCA_032645125.1_PDT001926997.1_genomic.fna	Salmonella_enterica	0.521	382.351 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNTQL010000001.1 Salmonella enterica strain PNUSAS390611 SAMN37805556-rid19700103.denovo.01, whole genome shotgun sequence	167932..168369	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNTQL010000036.1 Salmonella enterica strain PNUSAS390611 SAMN37805556-rid19700103.guided.25, whole genome shotgun sequence	3825..4262	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNTQL010000013.1 Salmonella enterica strain PNUSAS390611 SAMN37805556-rid19700103.denovo.13, whole genome shotgun sequence	75517..75658																																																						avrA	ABNTQL010000002.1	144915..145784	99.31	870	0						
GCA_032645145.1_PDT001926998.1_genomic.fna	Salmonella_enterica	0.5209	224.424 KB	7	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNTQJ010000001.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325647 SAMN37805561-rid19701393.denovo.01, whole genome shotgun sequence	389050..389487	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTQJ010000036.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325647 SAMN37805561-rid19701393.denovo.41, whole genome shotgun sequence	5947..6783	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNTQJ010000036.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325647 SAMN37805561-rid19701393.denovo.41, whole genome shotgun sequence	4916..5729	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	V00359	aph(3'')-Ib	100	804/804	ABNTQJ010000036.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325647 SAMN37805561-rid19701393.denovo.41, whole genome shotgun sequence	6783..7586	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNTQJ010000049.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325647 SAMN37805561-rid19701393.guided.28, whole genome shotgun sequence	21654..22091	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTQJ010000052.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325647 SAMN37805561-rid19701393.guided.40, whole genome shotgun sequence	4571..5407	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNTQJ010000052.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325647 SAMN37805561-rid19701393.guided.40, whole genome shotgun sequence	5625..6438	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	V00359	aph(3'')-Ib	100	804/804	ABNTQJ010000052.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325647 SAMN37805561-rid19701393.guided.40, whole genome shotgun sequence	3768..4571	Streptomycin	AF321551	sul2	99.88	816/816	ABNTQJ010000004.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325647 SAMN37805561-rid19701393.denovo.04, whole genome shotgun sequence	345722..346537	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNTQJ010000051.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325647 SAMN37805561-rid19701393.guided.39, whole genome shotgun sequence	12299..13114	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNTQJ010000038.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325647 SAMN37805561-rid19701393.denovo.43, whole genome shotgun sequence	1300..2505	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNTQJ010000053.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325647 SAMN37805561-rid19701393.guided.44, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTQJ010000011.1	102556..103424	99.655	869	0						
GCA_032645165.1_PDT001926996.1_genomic.fna	Salmonella_enterica	0.5223	496.511 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTQM010000001.1 Salmonella enterica strain PNUSAS390616 SAMN37805557-rid19704313.denovo.01, whole genome shotgun sequence	831970..832407	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNTQM010000022.1 Salmonella enterica strain PNUSAS390616 SAMN37805557-rid19704313.guided.14, whole genome shotgun sequence	28669..29106	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTQM010000002.1	147026..147895	98.966	870	0						
GCA_032645185.1_PDT001926995.1_genomic.fna	Salmonella_enterica	0.5209	356.484 KB	5	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNTQN010000001.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325667 SAMN37805555-rid19702873.denovo.01, whole genome shotgun sequence	779750..780187	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNTQN010000030.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325667 SAMN37805555-rid19702873.guided.18, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTQN010000005.1	174148..175017	99.425	870	0						
GCA_032645205.1_PDT001926994.1_genomic.fna	Salmonella_enterica	0.5163	374.182 KB	5	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNTQO010000003.1 Salmonella enterica strain PNUSAS390619 SAMN37805554-rid19697753.denovo.03, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNTQO010000032.1 Salmonella enterica strain PNUSAS390619 SAMN37805554-rid19697753.guided.24, whole genome shotgun sequence	3783..4220	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032645225.1_PDT001926993.1_genomic.fna	Salmonella_enterica	0.5225	225.58 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTQP010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325669 SAMN37805559-rid19701383.denovo.01, whole genome shotgun sequence	791116..791553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTQP010000041.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325669 SAMN37805559-rid19701383.guided.29, whole genome shotgun sequence	9131..9568	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032645245.1_PDT001926992.1_genomic.fna	Salmonella_enterica	0.5228	225.591 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTQQ010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325668 SAMN37805558-rid19698983.denovo.01, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTQQ010000039.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325668 SAMN37805558-rid19698983.guided.30, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032645265.1_PDT001926990.1_genomic.fna	Salmonella_enterica	0.522	671.48 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_603	2783	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_603	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNTQR010000001.1 Salmonella enterica strain PNUSAS390631 SAMN37805544-rid19698973.denovo.01, whole genome shotgun sequence	674346..674783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNTQR010000021.1 Salmonella enterica strain PNUSAS390631 SAMN37805544-rid19698973.guided.15, whole genome shotgun sequence	8113..8550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTQR010000002.1	495778..496647	99.54	870	0						
GCA_032645285.1_PDT001926989.1_genomic.fna	Salmonella_enterica	0.5206	337.203 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTQS010000001.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325662 SAMN37805542-rid19702863.denovo.01, whole genome shotgun sequence	772254..772691	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTQS010000039.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325662 SAMN37805542-rid19702863.guided.21, whole genome shotgun sequence	7504..7941	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTQS010000002.1	581281..582150	99.195	870	0						
GCA_032645305.1_PDT001926987.1_genomic.fna	Salmonella_enterica	0.5214	308.681 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNTQU010000004.1 Salmonella enterica strain PNUSAS390635 SAMN37805541-rid19697743.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNTQU010000042.1 Salmonella enterica strain PNUSAS390635 SAMN37805541-rid19697743.guided.35, whole genome shotgun sequence	1336..1773	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNTQU010000016.1 Salmonella enterica strain PNUSAS390635 SAMN37805541-rid19697743.denovo.16, whole genome shotgun sequence	48419..49061	enterobacteriales	IncFII(S)	100	262 / 262	ABNTQU010000016.1 Salmonella enterica strain PNUSAS390635 SAMN37805541-rid19697743.denovo.16, whole genome shotgun sequence	64144..64405		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNTQU010000018.1 Salmonella enterica strain PNUSAS390635 SAMN37805541-rid19697743.denovo.18, whole genome shotgun sequence	15830..15971																																									avrA	ABNTQU010000001.1	175008..175876	100	869	0						
GCA_032645325.1_PDT001926985.1_genomic.fna	Salmonella_enterica	0.5208	337.02 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTQT010000007.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325659 SAMN37805549-rid19698963.denovo.07, whole genome shotgun sequence	141383..141820	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTQT010000040.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325659 SAMN37805549-rid19698963.guided.23, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTQT010000001.1	534215..535084	99.195	870	0						
GCA_032645345.1_PDT001926974.1_genomic.fna	Salmonella_enterica	0.5222	693.946 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNTQW010000001.1 Salmonella enterica strain PNUSAS390604 SAMN37805534-rid19702843.denovo.01, whole genome shotgun sequence	684180..684617	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNTQW010000017.1 Salmonella enterica strain PNUSAS390604 SAMN37805534-rid19702843.guided.11, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTQW010000003.1	563798..564667	99.77	870	0						
GCA_032645365.1_PDT001926963.1_genomic.fna	Salmonella_enterica	0.5222	728.55 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTQY010000001.1 Salmonella enterica strain PNUSAS390623 SAMN37805525-rid19700093.denovo.01, whole genome shotgun sequence	687395..687832	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNTQY010000023.1 Salmonella enterica strain PNUSAS390623 SAMN37805525-rid19700093.guided.13, whole genome shotgun sequence	14088..14525	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNTQY010000015.1 Salmonella enterica strain PNUSAS390623 SAMN37805525-rid19700093.denovo.18, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNTQY010000025.1 Salmonella enterica strain PNUSAS390623 SAMN37805525-rid19700093.guided.20, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNTQY010000015.1 Salmonella enterica strain PNUSAS390623 SAMN37805525-rid19700093.denovo.18, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTQY010000026.1 Salmonella enterica strain PNUSAS390623 SAMN37805525-rid19700093.guided.22, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNTQY010000015.1 Salmonella enterica strain PNUSAS390623 SAMN37805525-rid19700093.denovo.18, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTQY010000025.1 Salmonella enterica strain PNUSAS390623 SAMN37805525-rid19700093.guided.20, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNTQY010000015.1 Salmonella enterica strain PNUSAS390623 SAMN37805525-rid19700093.denovo.18, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNTQY010000025.1 Salmonella enterica strain PNUSAS390623 SAMN37805525-rid19700093.guided.20, whole genome shotgun sequence	9840..11114	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNTQY010000015.1 Salmonella enterica strain PNUSAS390623 SAMN37805525-rid19700093.denovo.18, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNTQY010000025.1 Salmonella enterica strain PNUSAS390623 SAMN37805525-rid19700093.guided.20, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNTQY010000014.1 Salmonella enterica strain PNUSAS390623 SAMN37805525-rid19700093.denovo.16, whole genome shotgun sequence	4434..4684																																																						avrA	ABNTQY010000003.1	553473..554342	99.77	870	0						
GCA_032645385.1_PDT001926968.1_genomic.fna	Salmonella_enterica	0.5204	394.174 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNTQX010000001.1 Salmonella enterica strain PNUSAS390603 SAMN37805529-rid19701353.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNTQX010000027.1 Salmonella enterica strain PNUSAS390603 SAMN37805529-rid19701353.guided.12, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTQX010000002.1	144915..145784	99.31	870	0						
GCA_032645405.1_PDT001926962.1_genomic.fna	Salmonella_enterica	0.5213	312.848 KB	4	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTQZ010000001.1 Salmonella enterica strain PNUSAS390621 SAMN37805521-rid19702823.denovo.01, whole genome shotgun sequence	932513..932950	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNTQZ010000030.1 Salmonella enterica strain PNUSAS390621 SAMN37805521-rid19702823.guided.19, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032645425.1_PDT001926984.1_genomic.fna	Salmonella_enterica	0.5223	432.338 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNTQV010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325663 SAMN37805545-rid19702853.denovo.01, whole genome shotgun sequence	499242..499679	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTQV010000020.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325663 SAMN37805545-rid19702853.denovo.21, whole genome shotgun sequence	322..1158	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTQV010000020.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325663 SAMN37805545-rid19702853.denovo.21, whole genome shotgun sequence	1158..1961	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	ABNTQV010000026.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325663 SAMN37805545-rid19702853.guided.20, whole genome shotgun sequence	17068..17505	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTQV010000030.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325663 SAMN37805545-rid19702853.guided.26, whole genome shotgun sequence	4357..5193	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTQV010000030.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325663 SAMN37805545-rid19702853.guided.26, whole genome shotgun sequence	3554..4357	Streptomycin	AF321551	blaTEM-1A	100	861/861	ABNTQV010000020.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325663 SAMN37805545-rid19702853.denovo.21, whole genome shotgun sequence	2999..3859	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNTQV010000030.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325663 SAMN37805545-rid19702853.guided.26, whole genome shotgun sequence	1656..2516	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	ABNTQV010000019.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325663 SAMN37805545-rid19702853.denovo.19, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTQV010000031.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325663 SAMN37805545-rid19702853.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNTQV010000020.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325663 SAMN37805545-rid19702853.denovo.21, whole genome shotgun sequence	2022..2837	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNTQV010000030.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325663 SAMN37805545-rid19702853.guided.26, whole genome shotgun sequence	2678..3493	Sulfamethoxazole	AY034138	tet(A)	100	1226/1275	ABNTQV010000020.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325663 SAMN37805545-rid19702853.denovo.21, whole genome shotgun sequence	8512..9737	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	ABNTQV010000028.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325663 SAMN37805545-rid19702853.guided.24, whole genome shotgun sequence	788..1987	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABNTQV010000032.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325663 SAMN37805545-rid19702853.guided.29, whole genome shotgun sequence	713..1987	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNTQV010000019.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325663 SAMN37805545-rid19702853.denovo.19, whole genome shotgun sequence	11449..11699																																																						avrA	ABNTQV010000002.1	130389..131258	99.54	870	0						
GCA_032645445.1_PDT001926959.1_genomic.fna	Salmonella_enterica	0.5222	386.57 KB	4	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTRA010000003.1 Salmonella enterica strain PNUSAS390589 SAMN37805519-rid19697733.denovo.03, whole genome shotgun sequence	302267..302704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTRA010000026.1 Salmonella enterica strain PNUSAS390589 SAMN37805519-rid19697733.guided.25, whole genome shotgun sequence	1035..1472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032645465.1_PDT001926957.1_genomic.fna	Salmonella_enterica	0.5211	300.454 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTRB010000003.1 Salmonella enterica strain PNUSAS390594 SAMN37805518-rid19697723.denovo.03, whole genome shotgun sequence	162458..162895	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTRB010000033.1 Salmonella enterica strain PNUSAS390594 SAMN37805518-rid19697723.guided.27, whole genome shotgun sequence	386..823	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTRB010000023.1 Salmonella enterica strain PNUSAS390594 SAMN37805518-rid19697723.denovo.23, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNTRB010000019.1 Salmonella enterica strain PNUSAS390594 SAMN37805518-rid19697723.denovo.19, whole genome shotgun sequence	5032..5293																																																avrA	ABNTRB010000001.1	585491..586360	99.54	870	0						
GCA_032645485.1_PDT001926956.1_genomic.fna	Salmonella_enterica	0.5213	249.357 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTRC010000004.1 Salmonella enterica strain PNUSAS390587 SAMN37805516-rid19704293.denovo.04, whole genome shotgun sequence	200041..200478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTRC010000035.1 Salmonella enterica strain PNUSAS390587 SAMN37805516-rid19704293.guided.29, whole genome shotgun sequence	4251..4688	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNTRC010000030.1 Salmonella enterica strain PNUSAS390587 SAMN37805516-rid19704293.denovo.33, whole genome shotgun sequence	1807..2451	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNTRC010000038.1 Salmonella enterica strain PNUSAS390587 SAMN37805516-rid19704293.guided.34, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNTRC010000030.1 Salmonella enterica strain PNUSAS390587 SAMN37805516-rid19704293.denovo.33, whole genome shotgun sequence	1150..1280	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTRC010000026.1 Salmonella enterica strain PNUSAS390587 SAMN37805516-rid19704293.denovo.26, whole genome shotgun sequence	6832..7474		enterobacteriales	IncFII(S)	100	262 / 262	ABNTRC010000028.1 Salmonella enterica strain PNUSAS390587 SAMN37805516-rid19704293.denovo.28, whole genome shotgun sequence	3395..3656																																									avrA	ABNTRC010000001.1	553630..554499	99.54	870	0						
GCA_032645505.1_PDT001926955.1_genomic.fna	Salmonella_enterica	0.5216	362.896 KB	4	aroC_50,dnaN_10,hemD_25,hisD_72,purE_10,sucA_13,thrA_4	414	9:e,h:1,5	5	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1A,blaTEM-1A,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	2	ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Eastbourne		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNTRD010000001.1 Salmonella enterica strain PNUSAS390592 SAMN37805515-rid19698923.denovo.01, whole genome shotgun sequence	393757..394194	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNTRD010000040.1 Salmonella enterica strain PNUSAS390592 SAMN37805515-rid19698923.guided.33, whole genome shotgun sequence	4813..5250	Amikacin, Tobramycin	NC_003197	blaTEM-1A	100	861/861	ABNTRD010000019.1 Salmonella enterica strain PNUSAS390592 SAMN37805515-rid19698923.denovo.19, whole genome shotgun sequence	39418..40278	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNTRD010000037.1 Salmonella enterica strain PNUSAS390592 SAMN37805515-rid19698923.guided.28, whole genome shotgun sequence	121..981	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	qnrS1	100	657/657	ABNTRD010000019.1 Salmonella enterica strain PNUSAS390592 SAMN37805515-rid19698923.denovo.19, whole genome shotgun sequence	43177..43833	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNTRD010000039.1 Salmonella enterica strain PNUSAS390592 SAMN37805515-rid19698923.guided.31, whole genome shotgun sequence	2791..3447	Ciprofloxacin	AB187515	sul2	100	816/816	ABNTRD010000019.1 Salmonella enterica strain PNUSAS390592 SAMN37805515-rid19698923.denovo.19, whole genome shotgun sequence	33782..34597	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNTRD010000037.1 Salmonella enterica strain PNUSAS390592 SAMN37805515-rid19698923.guided.28, whole genome shotgun sequence	5802..6617	Sulfamethoxazole	AY034138	tet(A)	99.92	1200/1200	ABNTRD010000027.1 Salmonella enterica strain PNUSAS390592 SAMN37805515-rid19698923.denovo.27, whole genome shotgun sequence	889..2088	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNTRD010000041.1 Salmonella enterica strain PNUSAS390592 SAMN37805515-rid19698923.guided.37, whole genome shotgun sequence	12..1211	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.45	193 / 193	ABNTRD010000032.1 Salmonella enterica strain PNUSAS390592 SAMN37805515-rid19698923.denovo.36, whole genome shotgun sequence	519..711	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNTRD010000027.1 Salmonella enterica strain PNUSAS390592 SAMN37805515-rid19698923.denovo.27, whole genome shotgun sequence	8358..8499																																																avrA	ABNTRD010000004.1	94291..95160	99.31	870	0						
GCA_032645525.1_PDT001926954.1_genomic.fna	Salmonella_enterica	0.5217	123.536 KB	10	aroC_161,dnaN_1,hemD_117,hisD_1319,purE_155,sucA_955,thrA_181	Unknown	8:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_161	dnaN	100	100	dnaN_1	hemD	100	100	hemD_117	hisD	100	100	hisD_1319	purE	100	100	purE_155	sucA	100	100	sucA_955	thrA	100	100	thrA_181	8	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Korbol or Nagoya	The predicted serotypes share the same general formula: 8:b:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNTRE010000001.1 Salmonella enterica strain PNUSAS390595 SAMN37805513-rid19702813.denovo.01, whole genome shotgun sequence	53121..53558	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNTRE010000078.1 Salmonella enterica strain PNUSAS390595 SAMN37805513-rid19702813.guided.54, whole genome shotgun sequence	5231..5668	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.01	644 / 643	ABNTRE010000055.1 Salmonella enterica strain PNUSAS390595 SAMN37805513-rid19702813.denovo.57, whole genome shotgun sequence	6346..6988																																																																	
GCA_032645545.1_PDT001926952.1_genomic.fna	Salmonella_enterica	0.5224	377.448 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTRG010000001.1 Salmonella enterica strain PNUSAS390588 SAMN37805514-rid19702803.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNTRG010000035.1 Salmonella enterica strain PNUSAS390588 SAMN37805514-rid19702803.guided.27, whole genome shotgun sequence	1682..2119	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTRG010000003.1	149551..150420	99.655	870	0						
GCA_032645565.1_PDT001926953.1_genomic.fna	Salmonella_enterica	0.5224	271.625 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTRF010000001.1 Salmonella enterica strain PNUSAS390596 SAMN37805512-rid19700083.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTRF010000036.1 Salmonella enterica strain PNUSAS390596 SAMN37805512-rid19700083.guided.31, whole genome shotgun sequence	448..885	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032645645.1_PDT001926937.1_genomic.fna	Salmonella_enterica	0.5218	197.864 KB	8	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNTRM010000007.1 Salmonella enterica strain PNUSAS390651 SAMN37805484-rid19697683.denovo.07, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNTRM010000040.1 Salmonella enterica strain PNUSAS390651 SAMN37805484-rid19697683.guided.33, whole genome shotgun sequence	5681..6118	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNTRM010000003.1	150323..151192	99.77	870	0						
GCA_032645665.1_PDT001926940.1_genomic.fna	Salmonella_enterica	0.5223	91.092 KB	16	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTRL010000010.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325645 SAMN37805497-rid19700063.denovo.010, whole genome shotgun sequence	84781..85218	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTRL010000106.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325645 SAMN37805497-rid19700063.guided.043, whole genome shotgun sequence	16041..16478	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNTRL010000075.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325645 SAMN37805497-rid19700063.denovo.078, whole genome shotgun sequence	358..488																																																																	
GCA_032645685.1_PDT001926941.1_genomic.fna	Salmonella_enterica	0.5216	390.576 KB	5	aroC_81,dnaN_69,hemD_36,hisD_12,purE_68,sucA_12,thrA_17	203	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_69	hemD	100	100	hemD_36	hisD	100	100	hisD_12	purE	100	100	purE_68	sucA	100	100	sucA_12	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNTRK010000001.1 Salmonella enterica strain PNUSAS390653 SAMN37805501-rid19704263.denovo.01, whole genome shotgun sequence	322303..322740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNTRK010000029.1 Salmonella enterica strain PNUSAS390653 SAMN37805501-rid19704263.guided.17, whole genome shotgun sequence	38519..38956	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTRK010000002.1	554085..554954	99.655	870	0						
GCA_032645745.1_PDT001926934.1_genomic.fna	Salmonella_enterica	0.5198	226.581 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	5	aac(6')-Iaa,aadA7,aac(6')-Iaa,aadA7,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTRO010000001.1 Salmonella enterica strain PNUSAS390650 SAMN37805487-rid19702773.denovo.01, whole genome shotgun sequence	486112..486549	Amikacin, Tobramycin	NC_003197	aadA7	99	798/798	ABNTRO010000011.1 Salmonella enterica strain PNUSAS390650 SAMN37805487-rid19702773.denovo.11, whole genome shotgun sequence	54232..55029	Spectinomycin, Streptomycin	AF224733	aac(6')-Iaa	97.95	438/438	ABNTRO010000053.1 Salmonella enterica strain PNUSAS390650 SAMN37805487-rid19702773.guided.31, whole genome shotgun sequence	5688..6125	Amikacin, Tobramycin	NC_003197	aadA7	99	798/798	ABNTRO010000056.1 Salmonella enterica strain PNUSAS390650 SAMN37805487-rid19702773.guided.40, whole genome shotgun sequence	2919..3716	Spectinomycin, Streptomycin	AF224733	fosA7	97.16	423/423	ABNTRO010000004.1 Salmonella enterica strain PNUSAS390650 SAMN37805487-rid19702773.denovo.04, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNTRO010000055.1 Salmonella enterica strain PNUSAS390650 SAMN37805487-rid19702773.guided.37, whole genome shotgun sequence	8658..9080	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNTRO010000011.1 Salmonella enterica strain PNUSAS390650 SAMN37805487-rid19702773.denovo.11, whole genome shotgun sequence	55534..56373	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTRO010000056.1 Salmonella enterica strain PNUSAS390650 SAMN37805487-rid19702773.guided.40, whole genome shotgun sequence	4221..5060	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTRO010000011.1 Salmonella enterica strain PNUSAS390650 SAMN37805487-rid19702773.denovo.11, whole genome shotgun sequence	65669..66868	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTRO010000057.1 Salmonella enterica strain PNUSAS390650 SAMN37805487-rid19702773.guided.42, whole genome shotgun sequence	3931..5130	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTRO010000002.1	66883..67752	99.195	870	0						
GCA_032645785.1_PDT001926933.1_genomic.fna	Salmonella_enterica	0.5226	393.306 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTRQ010000001.1 Salmonella enterica strain PNUSAS390654 SAMN37805499-rid19700053.denovo.01, whole genome shotgun sequence	180534..180971	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNTRQ010000036.1 Salmonella enterica strain PNUSAS390654 SAMN37805499-rid19700053.guided.17, whole genome shotgun sequence	23789..24226	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTRQ010000002.1	149551..150420	99.655	870	0						
GCA_032645805.1_PDT001926929.1_genomic.fna	Salmonella_enterica	0.5219	180.317 KB	10	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTRT010000021.1 Salmonella enterica strain PNUSAS390648 SAMN37805493-rid19704233.denovo.21, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNTRT010000074.1 Salmonella enterica strain PNUSAS390648 SAMN37805493-rid19704233.guided.39, whole genome shotgun sequence	13796..14233	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTRT010000001.1	39460..40328	99.31	870	0						
GCA_032645825.1_PDT001926932.1_genomic.fna	Salmonella_enterica	0.5232	90.66 KB	17	aroC_22,dnaN_104,hemD_25,hisD_113,purE_12,sucA_83,thrA_4	308	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_25	hisD	100	100	hisD_113	purE	100	100	purE_12	sucA	100	100	sucA_83	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNTRP010000009.1 Salmonella enterica subsp. enterica serovar Poona strain FSIS12325642 SAMN37805492-rid19702763.denovo.009, whole genome shotgun sequence	90297..90734	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNTRP010000100.1 Salmonella enterica subsp. enterica serovar Poona strain FSIS12325642 SAMN37805492-rid19702763.guided.055, whole genome shotgun sequence	7747..8184	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTRP010000004.1	98177..99046	99.655	870	0						
GCA_032645865.1_PDT001926936.1_genomic.fna	Salmonella_enterica	0.5222	240.01 KB	6	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNTRN010000001.1 Salmonella enterica strain PNUSAS390652 SAMN37805500-rid19704253.denovo.01, whole genome shotgun sequence	261219..261656	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNTRN010000036.1 Salmonella enterica strain PNUSAS390652 SAMN37805500-rid19704253.guided.25, whole genome shotgun sequence	1755..2192	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032645885.1_PDT001926925.1_genomic.fna	Salmonella_enterica	0.5198	430.195 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTRR010000001.1 Salmonella enterica strain PNUSAS390655 SAMN37805496-rid19698893.denovo.01, whole genome shotgun sequence	477380..477817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTRR010000031.1 Salmonella enterica strain PNUSAS390655 SAMN37805496-rid19698893.guided.19, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNTRR010000017.1 Salmonella enterica strain PNUSAS390655 SAMN37805496-rid19698893.denovo.18, whole genome shotgun sequence	2465..2998	enterobacteriales	IncX1	98.66	374 / 374	ABNTRR010000020.1 Salmonella enterica strain PNUSAS390655 SAMN37805496-rid19698893.denovo.22, whole genome shotgun sequence	6956..7329																																																avrA	ABNTRR010000016.1	39477..40347	99.196	871	0						
GCA_032645955.1_PDT001926924.1_genomic.fna	Salmonella_enterica	0.5194	179.581 KB	11	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	5	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	2	ColRNAI,IncY	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNTRS010000001.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325620 SAMN37805486-rid19704223.denovo.01, whole genome shotgun sequence	147878..148315	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNTRS010000030.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325620 SAMN37805486-rid19704223.denovo.30, whole genome shotgun sequence	51604..52383	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	98.17	438/438	ABNTRS010000058.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325620 SAMN37805486-rid19704223.guided.31, whole genome shotgun sequence	16421..16858	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNTRS010000061.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325620 SAMN37805486-rid19704223.guided.44, whole genome shotgun sequence	6159..6938	Spectinomycin, Streptomycin	D43625	fosA7	97.16	423/423	ABNTRS010000011.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325620 SAMN37805486-rid19704223.denovo.11, whole genome shotgun sequence	160606..161028	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNTRS010000060.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325620 SAMN37805486-rid19704223.guided.39, whole genome shotgun sequence	18574..18996	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNTRS010000030.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325620 SAMN37805486-rid19704223.denovo.30, whole genome shotgun sequence	52888..53727	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTRS010000061.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325620 SAMN37805486-rid19704223.guided.44, whole genome shotgun sequence	7443..8282	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTRS010000042.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325620 SAMN37805486-rid19704223.denovo.47, whole genome shotgun sequence	6632..7831	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTRS010000063.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325620 SAMN37805486-rid19704223.guided.48, whole genome shotgun sequence	5015..6214	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNTRS010000047.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325620 SAMN37805486-rid19704223.denovo.53, whole genome shotgun sequence	1294..1424	enterobacteriales	IncY	99.74	765 / 765	ABNTRS010000022.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12325620 SAMN37805486-rid19704223.denovo.22, whole genome shotgun sequence	38912..39676																																																avrA	ABNTRS010000002.1	120658..121527	99.655	870	0						
GCA_032646005.1_PDT001926915.1_genomic.fna	Salmonella_enterica	0.5213	385.563 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTRV010000001.1 Salmonella enterica strain PNUSAS390583 SAMN37805471-rid19698883.denovo.01, whole genome shotgun sequence	414595..415032	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTRV010000034.1 Salmonella enterica strain PNUSAS390583 SAMN37805471-rid19698883.guided.27, whole genome shotgun sequence	1828..2265	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032646085.1_PDT001926913.1_genomic.fna	Salmonella_enterica	0.5226	354.82 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNTRW010000001.1 Salmonella enterica strain PNUSAS390582 SAMN37805470-rid19701273.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNTRW010000040.1 Salmonella enterica strain PNUSAS390582 SAMN37805470-rid19701273.guided.21, whole genome shotgun sequence	5121..5558	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNTRW010000024.1 Salmonella enterica strain PNUSAS390582 SAMN37805470-rid19701273.denovo.27, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNTRW010000026.1 Salmonella enterica strain PNUSAS390582 SAMN37805470-rid19701273.denovo.29, whole genome shotgun sequence	2528..2639																																																avrA	ABNTRW010000008.1	94166..95034	99.425	870	0						
GCA_032646105.1_PDT001926905.1_genomic.fna	Salmonella_enterica	0.5214	367.655 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	4	aac(6')-Iaa,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),ColRNAI,IncQ1,IncQ1	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNTRY010000001.1 Salmonella enterica strain PNUSAS390483 SAMN37805428-rid19698873.denovo.01, whole genome shotgun sequence	479991..480428	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	671/804	ABNTRY010000022.1 Salmonella enterica strain PNUSAS390483 SAMN37805428-rid19698873.denovo.26, whole genome shotgun sequence	8803..9473	Streptomycin	AF321551	aac(6')-Iaa	98.17	438/438	ABNTRY010000032.1 Salmonella enterica strain PNUSAS390483 SAMN37805428-rid19698873.guided.23, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	695/804	ABNTRY010000034.1 Salmonella enterica strain PNUSAS390483 SAMN37805428-rid19698873.guided.25, whole genome shotgun sequence	7879..8573	Streptomycin	AF321551	sul2	100	816/816	ABNTRY010000022.1 Salmonella enterica strain PNUSAS390483 SAMN37805428-rid19698873.denovo.26, whole genome shotgun sequence	85..900	Sulfamethoxazole	FN995456	sul2	100	816/816	ABNTRY010000034.1 Salmonella enterica strain PNUSAS390483 SAMN37805428-rid19698873.guided.25, whole genome shotgun sequence	7003..7818	Sulfamethoxazole	FN995456	tet(A)	99.92	1200/1200	ABNTRY010000022.1 Salmonella enterica strain PNUSAS390483 SAMN37805428-rid19698873.denovo.26, whole genome shotgun sequence	6703..7902	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNTRY010000034.1 Salmonella enterica strain PNUSAS390483 SAMN37805428-rid19698873.guided.25, whole genome shotgun sequence	1..1200	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNTRY010000023.1 Salmonella enterica strain PNUSAS390483 SAMN37805428-rid19698873.denovo.27, whole genome shotgun sequence	239..369	enterobacteriales	ColRNAI	90.08	131 / 130	ABNTRY010000025.1 Salmonella enterica strain PNUSAS390483 SAMN37805428-rid19698873.denovo.29, whole genome shotgun sequence	3981..4111		enterobacteriales	IncQ1	100	796 / 796	ABNTRY010000022.1 Salmonella enterica strain PNUSAS390483 SAMN37805428-rid19698873.denovo.26, whole genome shotgun sequence	2240..3035		enterobacteriales	IncQ1	100	796 / 796	ABNTRY010000034.1 Salmonella enterica strain PNUSAS390483 SAMN37805428-rid19698873.guided.25, whole genome shotgun sequence	4868..5663																																		avrA	ABNTRY010000002.1	439489..440358	99.425	870	0						
GCA_032646125.1_PDT001926923.1_genomic.fna	Salmonella_enterica	0.5216	160.933 KB	11	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTRU010000021.1 Salmonella enterica strain PNUSAS390642 SAMN37805491-rid19701293.denovo.21, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNTRU010000080.1 Salmonella enterica strain PNUSAS390642 SAMN37805491-rid19701293.guided.50, whole genome shotgun sequence	2546..2983	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTRU010000001.1	55412..56280	99.31	870	0						
GCA_032646185.1_PDT001926885.1_genomic.fna	Salmonella_enterica	0.5209	301.908 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTSB010000001.1 Salmonella enterica strain PNUSAS390453 SAMN37805396-rid19698843.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNTSB010000036.1 Salmonella enterica strain PNUSAS390453 SAMN37805396-rid19698843.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNTSB010000004.1	184414..185282	99.77	870	0						
GCA_032646245.1_PDT001926868.1_genomic.fna	Salmonella_enterica	0.5221	576.292 KB	2	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTSC010000001.1 Salmonella enterica strain PNUSAS390471 SAMN37805385-rid19698813.denovo.01, whole genome shotgun sequence	1364678..1365115	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNTSC010000018.1 Salmonella enterica strain PNUSAS390471 SAMN37805385-rid19698813.guided.13, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNTSC010000002.1	401287..402156	99.655	870	0						
GCA_032646285.1_PDT001926902.1_genomic.fna	Salmonella_enterica	0.5204	252.117 KB	6	aroC_46,dnaN_588,hemD_3,hisD_800,purE_517,sucA_2,thrA_1	3868	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_588	hemD	100	100	hemD_3	hisD	100	100	hisD_800	purE	100	100	purE_517	sucA	100	100	sucA_2	thrA	100	100	thrA_1	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNTRZ010000001.1 Salmonella enterica strain PNUSAS390485 SAMN37805427-rid19697653.denovo.01, whole genome shotgun sequence	687562..687999	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNTRZ010000042.1 Salmonella enterica strain PNUSAS390485 SAMN37805427-rid19697653.guided.28, whole genome shotgun sequence	820..1257	Amikacin, Tobramycin	NC_003197	fosA7	93.14	423/423	ABNTRZ010000005.1 Salmonella enterica strain PNUSAS390485 SAMN37805427-rid19697653.denovo.05, whole genome shotgun sequence	159195..159617	Fosfomycin	LAPJ01000014	fosA7	93.14	423/423	ABNTRZ010000044.1 Salmonella enterica strain PNUSAS390485 SAMN37805427-rid19697653.guided.32, whole genome shotgun sequence	5066..5488	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTRZ010000002.1	94303..95174	99.541	872	0						
GCA_032646325.1_PDT001926858.1_genomic.fna	Salmonella_enterica	0.522	409.798 KB	5	aroC_81,dnaN_283,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	909	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_283	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTSD010000006.1 Salmonella enterica strain PNUSAS390446 SAMN37805370-rid19698793.denovo.06, whole genome shotgun sequence	248796..249233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTSD010000024.1 Salmonella enterica strain PNUSAS390446 SAMN37805370-rid19698793.guided.16, whole genome shotgun sequence	4910..5347	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTSD010000003.1	453483..454352	99.31	870	0						
GCA_032646345.1_PDT001926852.1_genomic.fna	Salmonella_enterica	0.5208	408.756 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTSE010000001.1 Salmonella enterica strain PNUSAS390511 SAMN37805343-rid19697593.denovo.01, whole genome shotgun sequence	628391..628828	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTSE010000030.1 Salmonella enterica strain PNUSAS390511 SAMN37805343-rid19697593.guided.18, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNTSE010000015.1 Salmonella enterica strain PNUSAS390511 SAMN37805343-rid19697593.denovo.15, whole genome shotgun sequence	2465..2998																																																						avrA	ABNTSE010000008.1	192358..193228	99.196	871	0						
GCA_032646375.1_PDT001926845.1_genomic.fna	Salmonella_enterica	0.5217	273.328 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNTSF010000017.1 Salmonella enterica strain PNUSAS390506 SAMN37805338-rid19699893.denovo.17, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNTSF010000041.1 Salmonella enterica strain PNUSAS390506 SAMN37805338-rid19699893.guided.25, whole genome shotgun sequence	20587..21024	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNTSF010000023.1 Salmonella enterica strain PNUSAS390506 SAMN37805338-rid19699893.denovo.23, whole genome shotgun sequence	44740..45382	enterobacteriales	IncFII(S)	100	262 / 262	ABNTSF010000023.1 Salmonella enterica strain PNUSAS390506 SAMN37805338-rid19699893.denovo.23, whole genome shotgun sequence	29394..29655																																																avrA	ABNTSF010000005.1	175018..175886	100	869	0						
GCA_032646425.1_PDT001926842.1_genomic.fna	Salmonella_enterica	0.5233	324.634 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTSH010000001.1 Salmonella enterica strain PNUSAS390522 SAMN37805315-rid19697583.denovo.01, whole genome shotgun sequence	108643..109080	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNTSH010000032.1 Salmonella enterica strain PNUSAS390522 SAMN37805315-rid19697583.guided.23, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTSH010000005.1	149828..150697	99.655	870	0						
GCA_032646645.1_PDT001926838.1_genomic.fna	Salmonella_enterica	0.5213	401.353 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTSI010000002.1 Salmonella enterica strain PNUSAS390516 SAMN37805309-rid19698763.denovo.02, whole genome shotgun sequence	417164..417601	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNTSI010000031.1 Salmonella enterica strain PNUSAS390516 SAMN37805309-rid19698763.guided.17, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNTSI010000021.1 Salmonella enterica strain PNUSAS390516 SAMN37805309-rid19698763.denovo.24, whole genome shotgun sequence	1480..1610																																																						avrA	ABNTSI010000003.1	514036..514904	99.655	870	0						
GCA_032647045.1_PDT001793512.1_genomic.fna	Salmonella_enterica	0.5225	397.918 KB	5	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(pCoo)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNTSW010000001.1 Salmonella enterica strain PNUSAS359485 SAMN36071125-rid18575463.denovo.01, whole genome shotgun sequence	666961..667398	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNTSW010000026.1 Salmonella enterica strain PNUSAS359485 SAMN36071125-rid18575463.guided.19, whole genome shotgun sequence	20553..20990	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(pCoo)	95.06	263 / 262	ABNTSW010000015.1 Salmonella enterica strain PNUSAS359485 SAMN36071125-rid18575463.denovo.15, whole genome shotgun sequence	57358..57617																																																						avrA	ABNTSW010000006.1	275705..276574	99.31	870	0						
GCA_032647065.1_PDT001793513.1_genomic.fna	Salmonella_enterica	0.5216	263.453 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTSU010000001.1 Salmonella enterica strain PNUSAS359501 SAMN36071168-rid18575473.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNTSU010000039.1 Salmonella enterica strain PNUSAS359501 SAMN36071168-rid18575473.guided.23, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNTSU010000016.1 Salmonella enterica strain PNUSAS359501 SAMN36071168-rid18575473.denovo.16, whole genome shotgun sequence	65921..67126	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNTSU010000042.1 Salmonella enterica strain PNUSAS359501 SAMN36071168-rid18575473.guided.35, whole genome shotgun sequence	1190..2395	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNTSU010000016.1 Salmonella enterica strain PNUSAS359501 SAMN36071168-rid18575473.denovo.16, whole genome shotgun sequence	73512..73653																																																						avrA	ABNTSU010000002.1	94091..94960	99.655	870	0						
GCA_032647085.1_PDT001793506.1_genomic.fna	Salmonella_enterica	0.5208	409.891 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNTSV010000001.1 Salmonella enterica strain PNUSAS359482 SAMN36071122-rid18575423.denovo.01, whole genome shotgun sequence	297931..298368	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNTSV010000031.1 Salmonella enterica strain PNUSAS359482 SAMN36071122-rid18575423.guided.19, whole genome shotgun sequence	13127..13564	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTSV010000003.1	130895..131764	99.54	870	0						
GCA_032647145.1_PDT001793468.1_genomic.fna	Salmonella_enterica	0.5214	196.664 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,floR,sul1,tet(G),tet(G),tet(G)	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTTC010000002.1 Salmonella enterica strain PNUSAS359453 SAMN36039863-rid18575033.denovo.02, whole genome shotgun sequence	162378..162815	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNTTC010000028.1 Salmonella enterica strain PNUSAS359453 SAMN36039863-rid18575033.denovo.28, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNTTC010000062.1 Salmonella enterica strain PNUSAS359453 SAMN36039863-rid18575033.guided.52, whole genome shotgun sequence	1906..2343	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNTTC010000065.1 Salmonella enterica strain PNUSAS359453 SAMN36039863-rid18575033.guided.64, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNTTC010000042.1 Salmonella enterica strain PNUSAS359453 SAMN36039863-rid18575033.denovo.43, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNTTC010000064.1 Salmonella enterica strain PNUSAS359453 SAMN36039863-rid18575033.guided.60, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNTTC010000042.1 Salmonella enterica strain PNUSAS359453 SAMN36039863-rid18575033.denovo.43, whole genome shotgun sequence	6603..7817	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNTTC010000059.1 Salmonella enterica strain PNUSAS359453 SAMN36039863-rid18575033.guided.44, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNTTC010000060.1 Salmonella enterica strain PNUSAS359453 SAMN36039863-rid18575033.guided.45, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNTTC010000063.1 Salmonella enterica strain PNUSAS359453 SAMN36039863-rid18575033.guided.53, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNTTC010000042.1 Salmonella enterica strain PNUSAS359453 SAMN36039863-rid18575033.denovo.43, whole genome shotgun sequence	4491..5666	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNTTC010000059.1 Salmonella enterica strain PNUSAS359453 SAMN36039863-rid18575033.guided.44, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140	tet(G)	99.91	1176/1176	ABNTTC010000060.1 Salmonella enterica strain PNUSAS359453 SAMN36039863-rid18575033.guided.45, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																	enterobacteriales	IncFIB(S)	100	643 / 643	ABNTTC010000030.1 Salmonella enterica strain PNUSAS359453 SAMN36039863-rid18575033.denovo.30, whole genome shotgun sequence	44748..45390	enterobacteriales	IncFII(S)	100	262 / 262	ABNTTC010000030.1 Salmonella enterica strain PNUSAS359453 SAMN36039863-rid18575033.denovo.30, whole genome shotgun sequence	29402..29663																																																avrA	ABNTTC010000001.1	401611..402480	99.885	870	0						
GCA_032647175.1_PDT001793467.1_genomic.fna	Salmonella_enterica	0.5218	203.759 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTTE010000001.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTTE010000013.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.denovo.13, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTTE010000013.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.denovo.13, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNTTE010000037.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.denovo.41, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNTTE010000037.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.denovo.41, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNTTE010000052.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.guided.33, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTTE010000052.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.guided.33, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNTTE010000054.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.guided.39, whole genome shotgun sequence	5415..5852	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNTTE010000056.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.guided.46, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNTTE010000056.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.guided.46, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNTTE010000038.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.denovo.43, whole genome shotgun sequence	2754..3967	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTTE010000055.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.guided.42, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNTTE010000013.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.denovo.13, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTTE010000052.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.guided.33, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTTE010000013.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.denovo.13, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTTE010000052.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.guided.33, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNTTE010000030.1 Salmonella enterica strain PNUSAS359469 SAMN36039860-rid18574123.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABNTTE010000002.1	94085..94954	99.655	870	0						
GCA_032647205.1_PDT001793466.1_genomic.fna	Salmonella_enterica	0.5204	406.451 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTTD010000001.1 Salmonella enterica strain PNUSAS359457 SAMN36039856-rid18575023.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTTD010000023.1 Salmonella enterica strain PNUSAS359457 SAMN36039856-rid18575023.guided.19, whole genome shotgun sequence	2495..2932	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTTD010000017.1 Salmonella enterica strain PNUSAS359457 SAMN36039856-rid18575023.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNTTD010000005.1 Salmonella enterica strain PNUSAS359457 SAMN36039856-rid18575023.denovo.05, whole genome shotgun sequence	3393..3654		enterobacteriales	IncX1	98.93	374 / 374	ABNTTD010000014.1 Salmonella enterica strain PNUSAS359457 SAMN36039856-rid18575023.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNTTD010000002.1	553362..554231	99.54	870	0						
GCA_032647225.1_PDT001793465.1_genomic.fna	Salmonella_enterica	0.521	478.749 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTTF010000001.1 Salmonella enterica strain PNUSAS359470 SAMN36039868-rid18574113.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTTF010000023.1 Salmonella enterica strain PNUSAS359470 SAMN36039868-rid18574113.guided.12, whole genome shotgun sequence	32297..32734	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTTF010000015.1 Salmonella enterica strain PNUSAS359470 SAMN36039868-rid18574113.denovo.17, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNTTF010000017.1 Salmonella enterica strain PNUSAS359470 SAMN36039868-rid18574113.denovo.20, whole genome shotgun sequence	3414..3675																																																avrA	ABNTTF010000002.1	585342..586211	99.54	870	0						
GCA_032647765.1_PDT001793470.1_genomic.fna	Salmonella_enterica	0.5219	258.727 KB	7	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNTTA010000002.1 Salmonella enterica strain PNUSAS359459 SAMN36039865-rid18575053.denovo.02, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNTTA010000034.1 Salmonella enterica strain PNUSAS359459 SAMN36039865-rid18575053.guided.28, whole genome shotgun sequence	10137..10574	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNTTA010000010.1	118787..119655	99.655	870	0						
GCA_032647805.1_PDT001793469.1_genomic.fna	Salmonella_enterica	0.5197	407.184 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncX1,pKPC-CAV1320	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTTB010000001.1 Salmonella enterica strain PNUSAS359472 SAMN36039859-rid18575043.denovo.01, whole genome shotgun sequence	774378..774815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTTB010000032.1 Salmonella enterica strain PNUSAS359472 SAMN36039859-rid18575043.guided.18, whole genome shotgun sequence	3630..4067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTTB010000019.1 Salmonella enterica strain PNUSAS359472 SAMN36039859-rid18575043.denovo.21, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNTTB010000020.1 Salmonella enterica strain PNUSAS359472 SAMN36039859-rid18575043.denovo.23, whole genome shotgun sequence	3414..3675		enterobacteriales	IncX1	98.93	374 / 374	ABNTTB010000015.1 Salmonella enterica strain PNUSAS359472 SAMN36039859-rid18575043.denovo.16, whole genome shotgun sequence	32011..32384		enterobacteriales	pKPC-CAV1320	99.88	864 / 864	ABNTTB010000024.1 Salmonella enterica strain PNUSAS359472 SAMN36039859-rid18575043.denovo.27, whole genome shotgun sequence	949..1812																																		avrA	ABNTTB010000002.1	553682..554551	99.54	870	0						
GCA_032647815.1_PDT001793477.1_genomic.fna	Salmonella_enterica	0.5211	324.298 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTSZ010000001.1 Salmonella enterica strain PNUSAS359468 SAMN36039855-rid18575063.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTSZ010000027.1 Salmonella enterica strain PNUSAS359468 SAMN36039855-rid18575063.guided.25, whole genome shotgun sequence	1310..1747	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTSZ010000020.1 Salmonella enterica strain PNUSAS359468 SAMN36039855-rid18575063.denovo.21, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNTSZ010000017.1 Salmonella enterica strain PNUSAS359468 SAMN36039855-rid18575063.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABNTSZ010000002.1	553636..554505	99.54	870	0						
GCA_032647925.1_PDT001793463.1_genomic.fna	Salmonella_enterica	0.5209	695.584 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTTH010000001.1 Salmonella enterica strain PNUSAS359471 SAMN36039862-rid18575003.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTTH010000025.1 Salmonella enterica strain PNUSAS359471 SAMN36039862-rid18575003.guided.15, whole genome shotgun sequence	10647..11084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTTH010000018.1 Salmonella enterica strain PNUSAS359471 SAMN36039862-rid18575003.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNTTH010000019.1 Salmonella enterica strain PNUSAS359471 SAMN36039862-rid18575003.denovo.21, whole genome shotgun sequence	3403..3664																																																avrA	ABNTTH010000002.1	553636..554505	99.54	870	0						
GCA_032647945.1_PDT001793464.1_genomic.fna	Salmonella_enterica	0.5212	443.775 KB	4	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTTG010000001.1 Salmonella enterica strain PNUSAS359456 SAMN36039853-rid18575013.denovo.01, whole genome shotgun sequence	773827..774264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTTG010000026.1 Salmonella enterica strain PNUSAS359456 SAMN36039853-rid18575013.guided.23, whole genome shotgun sequence	523..960	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTTG010000015.1 Salmonella enterica strain PNUSAS359456 SAMN36039853-rid18575013.denovo.15, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNTTG010000015.1 Salmonella enterica strain PNUSAS359456 SAMN36039853-rid18575013.denovo.15, whole genome shotgun sequence	55621..55882																																																avrA	ABNTTG010000002.1	506624..507493	99.54	870	0						
GCA_032647985.1_PDT001793462.1_genomic.fna	Salmonella_enterica	0.5214	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTTI010000001.1 Salmonella enterica strain PNUSAS359462 SAMN36039850-rid18574103.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTTI010000024.1 Salmonella enterica strain PNUSAS359462 SAMN36039850-rid18574103.guided.16, whole genome shotgun sequence	11873..12310	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTTI010000016.1 Salmonella enterica strain PNUSAS359462 SAMN36039850-rid18574103.denovo.18, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNTTI010000013.1 Salmonella enterica strain PNUSAS359462 SAMN36039850-rid18574103.denovo.13, whole genome shotgun sequence	5998..6259																																																avrA	ABNTTI010000002.1	553636..554505	99.54	870	0						
GCA_032648005.1_PDT001793461.1_genomic.fna	Salmonella_enterica	0.5219	436.164 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTTJ010000001.1 Salmonella enterica strain PNUSAS359466 SAMN36039866-rid18574993.denovo.01, whole genome shotgun sequence	477459..477896	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTTJ010000022.1 Salmonella enterica strain PNUSAS359466 SAMN36039866-rid18574993.guided.18, whole genome shotgun sequence	7673..8110	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTTJ010000011.1	150695..151565	99.082	871	0						
GCA_032648025.1_PDT001793460.1_genomic.fna	Salmonella_enterica	0.5216	390.691 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aac(3)-VIa,aadA1,aadA1,aac(6')-Iaa,aac(6')-Iaa,aac(3)-VIa,sul1,sul1	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTTK010000001.1 Salmonella enterica strain 23SC06GT02-S1 isolate SALM23-0350 SAMN36039789-rid18574093.denovo.01, whole genome shotgun sequence	1374582..1375019	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNTTK010000017.1 Salmonella enterica strain 23SC06GT02-S1 isolate SALM23-0350 SAMN36039789-rid18574093.denovo.17, whole genome shotgun sequence	3377..4279	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNTTK010000017.1 Salmonella enterica strain 23SC06GT02-S1 isolate SALM23-0350 SAMN36039789-rid18574093.denovo.17, whole genome shotgun sequence	2422..3213	Spectinomycin, Streptomycin	JQ414041	aadA1	100	792/792	ABNTTK010000029.1 Salmonella enterica strain 23SC06GT02-S1 isolate SALM23-0350 SAMN36039789-rid18574093.guided.21, whole genome shotgun sequence	2463..3254	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	99.32	438/438	ABNTTK010000032.1 Salmonella enterica strain 23SC06GT02-S1 isolate SALM23-0350 SAMN36039789-rid18574093.guided.24, whole genome shotgun sequence	887..1324	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNTTK010000033.1 Salmonella enterica strain 23SC06GT02-S1 isolate SALM23-0350 SAMN36039789-rid18574093.guided.25, whole genome shotgun sequence	887..1324	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNTTK010000034.1 Salmonella enterica strain 23SC06GT02-S1 isolate SALM23-0350 SAMN36039789-rid18574093.guided.27, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	sul1	100	840/840	ABNTTK010000017.1 Salmonella enterica strain 23SC06GT02-S1 isolate SALM23-0350 SAMN36039789-rid18574093.denovo.17, whole genome shotgun sequence	10279..11118	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTTK010000030.1 Salmonella enterica strain 23SC06GT02-S1 isolate SALM23-0350 SAMN36039789-rid18574093.guided.22, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																																									parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNTTK010000017.1 Salmonella enterica strain 23SC06GT02-S1 isolate SALM23-0350 SAMN36039789-rid18574093.denovo.17, whole genome shotgun sequence	20640..20781																																																						avrA	ABNTTK010000007.1	140321..141190	99.655	870	0						
GCA_032648105.1_PDT001793458.1_genomic.fna	Salmonella_enterica	0.522	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_121,thrA_2	376	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_121	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTTM010000002.1 Salmonella enterica strain PNUSAS359415 SAMN36036573-rid18574973.denovo.02, whole genome shotgun sequence	145394..145831	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNTTM010000051.1 Salmonella enterica strain PNUSAS359415 SAMN36036573-rid18574973.guided.42, whole genome shotgun sequence	1150..1587	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNTTM010000019.1 Salmonella enterica strain PNUSAS359415 SAMN36036573-rid18574973.denovo.19, whole genome shotgun sequence	6816..7458	enterobacteriales	IncFII(S)	100	262 / 262	ABNTTM010000019.1 Salmonella enterica strain PNUSAS359415 SAMN36036573-rid18574973.denovo.19, whole genome shotgun sequence	22522..22783																																																avrA	ABNTTM010000001.1	400116..400985	99.885	870	0						
GCA_032648145.1_PDT001793459.1_genomic.fna	Salmonella_enterica	0.5213	233.245 KB	8	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTTL010000012.1 Salmonella enterica strain PNUSAS359455 SAMN36039857-rid18574983.denovo.12, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTTL010000042.1 Salmonella enterica strain PNUSAS359455 SAMN36039857-rid18574983.guided.39, whole genome shotgun sequence	700..1137	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNTTL010000021.1 Salmonella enterica strain PNUSAS359455 SAMN36039857-rid18574983.denovo.21, whole genome shotgun sequence	34958..35491																																																						avrA	ABNTTL010000013.1	135597..136465	99.54	870	0						
GCA_032648165.1_PDT001793456.1_genomic.fna	Salmonella_enterica	0.5205	384.017 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-54,blaCMY-54	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTTN010000002.1 Salmonella enterica strain PNUSAS359454 SAMN36039851-rid18574963.denovo.02, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.15	351/438	ABNTTN010000039.1 Salmonella enterica strain PNUSAS359454 SAMN36039851-rid18574963.guided.23, whole genome shotgun sequence	1..351	Amikacin, Tobramycin	NC_003197	blaCMY-54	99.48	1158/1152	ABNTTN010000013.1 Salmonella enterica strain PNUSAS359454 SAMN36039851-rid18574963.denovo.13, whole genome shotgun sequence	68650..69807	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	HM544039	blaCMY-54	99.48	1158/1152	ABNTTN010000038.1 Salmonella enterica strain PNUSAS359454 SAMN36039851-rid18574963.guided.21, whole genome shotgun sequence	6503..7660	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	HM544039																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNTTN010000013.1 Salmonella enterica strain PNUSAS359454 SAMN36039851-rid18574963.denovo.13, whole genome shotgun sequence	80425..80566																																																						avrA	ABNTTN010000010.1	150790..151660	99.196	871	0						
GCA_032648205.1_PDT001793455.1_genomic.fna	Salmonella_enterica	0.5211	365.397 KB	6	aroC_13,dnaN_127,hemD_506,hisD_113,purE_114,sucA_107,thrA_4	3095	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_506	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTTP010000001.1 Salmonella enterica strain PNUSAS359463 SAMN36039854-rid18574073.denovo.01, whole genome shotgun sequence	498131..498568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTTP010000031.1 Salmonella enterica strain PNUSAS359463 SAMN36039854-rid18574073.guided.22, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTTP010000011.1	140447..141316	99.425	870	0						
GCA_032648225.1_PDT001793453.1_genomic.fna	Salmonella_enterica	0.522	377.327 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTTQ010000001.1 Salmonella enterica strain 23SC06GT03-S1 isolate SALM23-0371 SAMN36039790-rid18574943.denovo.01, whole genome shotgun sequence	1312150..1312587	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTTQ010000022.1 Salmonella enterica strain 23SC06GT03-S1 isolate SALM23-0371 SAMN36039790-rid18574943.denovo.25, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNTTQ010000022.1 Salmonella enterica strain 23SC06GT03-S1 isolate SALM23-0371 SAMN36039790-rid18574943.denovo.25, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNTTQ010000022.1 Salmonella enterica strain 23SC06GT03-S1 isolate SALM23-0371 SAMN36039790-rid18574943.denovo.25, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNTTQ010000022.1 Salmonella enterica strain 23SC06GT03-S1 isolate SALM23-0371 SAMN36039790-rid18574943.denovo.25, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNTTQ010000022.1 Salmonella enterica strain 23SC06GT03-S1 isolate SALM23-0371 SAMN36039790-rid18574943.denovo.25, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNTTQ010000038.1 Salmonella enterica strain 23SC06GT03-S1 isolate SALM23-0371 SAMN36039790-rid18574943.guided.24, whole genome shotgun sequence	312..749	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTTQ010000039.1 Salmonella enterica strain 23SC06GT03-S1 isolate SALM23-0371 SAMN36039790-rid18574943.guided.27, whole genome shotgun sequence	1318..2154	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNTTQ010000039.1 Salmonella enterica strain 23SC06GT03-S1 isolate SALM23-0371 SAMN36039790-rid18574943.guided.27, whole genome shotgun sequence	516..1318	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNTTQ010000039.1 Salmonella enterica strain 23SC06GT03-S1 isolate SALM23-0371 SAMN36039790-rid18574943.guided.27, whole genome shotgun sequence	515..1318	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNTTQ010000039.1 Salmonella enterica strain 23SC06GT03-S1 isolate SALM23-0371 SAMN36039790-rid18574943.guided.27, whole genome shotgun sequence	515..1318	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNTTQ010000039.1 Salmonella enterica strain 23SC06GT03-S1 isolate SALM23-0371 SAMN36039790-rid18574943.guided.27, whole genome shotgun sequence	515..1318	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNTTQ010000023.1 Salmonella enterica strain 23SC06GT03-S1 isolate SALM23-0371 SAMN36039790-rid18574943.denovo.26, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTTQ010000040.1 Salmonella enterica strain 23SC06GT03-S1 isolate SALM23-0371 SAMN36039790-rid18574943.guided.29, whole genome shotgun sequence	225..1424	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNTTQ010000011.1 Salmonella enterica strain 23SC06GT03-S1 isolate SALM23-0371 SAMN36039790-rid18574943.denovo.11, whole genome shotgun sequence	35255..35396																																																						avrA	ABNTTQ010000002.1	573596..574465	99.655	870	0						
GCA_032648285.1_PDT001793452.1_genomic.fna	Salmonella_enterica	0.5206	406.452 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		4	IncFIB(S),IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTTR010000001.1 Salmonella enterica strain PNUSAS359413 SAMN36036576-rid18574933.denovo.01, whole genome shotgun sequence	857593..858030	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTTR010000018.1 Salmonella enterica strain PNUSAS359413 SAMN36036576-rid18574933.denovo.19, whole genome shotgun sequence	18956..19792	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTTR010000018.1 Salmonella enterica strain PNUSAS359413 SAMN36036576-rid18574933.denovo.19, whole genome shotgun sequence	19792..20595	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNTTR010000029.1 Salmonella enterica strain PNUSAS359413 SAMN36036576-rid18574933.guided.22, whole genome shotgun sequence	7213..8049	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTTR010000029.1 Salmonella enterica strain PNUSAS359413 SAMN36036576-rid18574933.guided.22, whole genome shotgun sequence	6410..7213	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNTTR010000031.1 Salmonella enterica strain PNUSAS359413 SAMN36036576-rid18574933.guided.25, whole genome shotgun sequence	8147..8584	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNTTR010000022.1 Salmonella enterica strain PNUSAS359413 SAMN36036576-rid18574933.denovo.27, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNTTR010000032.1 Salmonella enterica strain PNUSAS359413 SAMN36036576-rid18574933.guided.26, whole genome shotgun sequence	3944..4804	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNTTR010000018.1 Salmonella enterica strain PNUSAS359413 SAMN36036576-rid18574933.denovo.19, whole genome shotgun sequence	20656..21471	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNTTR010000029.1 Salmonella enterica strain PNUSAS359413 SAMN36036576-rid18574933.guided.22, whole genome shotgun sequence	5534..6349	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNTTR010000018.1 Salmonella enterica strain PNUSAS359413 SAMN36036576-rid18574933.denovo.19, whole genome shotgun sequence	24984..26183	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTTR010000029.1 Salmonella enterica strain PNUSAS359413 SAMN36036576-rid18574933.guided.22, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTTR010000021.1 Salmonella enterica strain PNUSAS359413 SAMN36036576-rid18574933.denovo.23, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNTTR010000015.1 Salmonella enterica strain PNUSAS359413 SAMN36036576-rid18574933.denovo.15, whole genome shotgun sequence	5032..5293		enterobacteriales	IncN	100	514 / 514	ABNTTR010000018.1 Salmonella enterica strain PNUSAS359413 SAMN36036576-rid18574933.denovo.19, whole genome shotgun sequence	673..1186		enterobacteriales	IncX1	98.66	374 / 374	ABNTTR010000016.1 Salmonella enterica strain PNUSAS359413 SAMN36036576-rid18574933.denovo.16, whole genome shotgun sequence	6057..6430																																		avrA	ABNTTR010000002.1	174827..175696	99.54	870	0						
GCA_032648325.1_PDT001793451.1_genomic.fna	Salmonella_enterica	0.5212	152.507 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTTS010000001.1 Salmonella enterica strain PNUSAS359419 SAMN36036577-rid18574923.denovo.01, whole genome shotgun sequence	458963..459400	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTTS010000044.1 Salmonella enterica strain PNUSAS359419 SAMN36036577-rid18574923.denovo.49, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTTS010000044.1 Salmonella enterica strain PNUSAS359419 SAMN36036577-rid18574923.denovo.49, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNTTS010000059.1 Salmonella enterica strain PNUSAS359419 SAMN36036577-rid18574923.guided.41, whole genome shotgun sequence	3807..4244	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTTS010000061.1 Salmonella enterica strain PNUSAS359419 SAMN36036577-rid18574923.guided.48, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTTS010000061.1 Salmonella enterica strain PNUSAS359419 SAMN36036577-rid18574923.guided.48, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNTTS010000046.1 Salmonella enterica strain PNUSAS359419 SAMN36036577-rid18574923.denovo.52, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNTTS010000062.1 Salmonella enterica strain PNUSAS359419 SAMN36036577-rid18574923.guided.51, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNTTS010000044.1 Salmonella enterica strain PNUSAS359419 SAMN36036577-rid18574923.denovo.49, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNTTS010000061.1 Salmonella enterica strain PNUSAS359419 SAMN36036577-rid18574923.guided.48, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNTTS010000040.1 Salmonella enterica strain PNUSAS359419 SAMN36036577-rid18574923.denovo.44, whole genome shotgun sequence	424..1629	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNTTS010000060.1 Salmonella enterica strain PNUSAS359419 SAMN36036577-rid18574923.guided.43, whole genome shotgun sequence	3783..4988	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNTTS010000007.1	93863..94732	99.885	870	0						
GCA_032648485.1_PDT001793447.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTTW010000001.1 Salmonella enterica strain PNUSAS359422 SAMN36036574-rid18574053.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTTW010000024.1 Salmonella enterica strain PNUSAS359422 SAMN36036574-rid18574053.guided.19, whole genome shotgun sequence	4038..4475	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTTW010000016.1 Salmonella enterica strain PNUSAS359422 SAMN36036574-rid18574053.denovo.17, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNTTW010000017.1 Salmonella enterica strain PNUSAS359422 SAMN36036574-rid18574053.denovo.18, whole genome shotgun sequence	3423..3684																																																avrA	ABNTTW010000002.1	553642..554511	99.54	870	0						
GCA_032648625.1_PDT001793441.1_genomic.fna	Salmonella_enterica	0.5217	241.08 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNTUB010000001.1 Salmonella enterica strain PNUSAS359233 SAMN36021188-rid18574853.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	433/438	ABNTUB010000053.1 Salmonella enterica strain PNUSAS359233 SAMN36021188-rid18574853.guided.42, whole genome shotgun sequence	1..433	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNTUB010000026.1 Salmonella enterica strain PNUSAS359233 SAMN36021188-rid18574853.denovo.26, whole genome shotgun sequence	44721..45363	enterobacteriales	IncFII(S)	100	262 / 262	ABNTUB010000026.1 Salmonella enterica strain PNUSAS359233 SAMN36021188-rid18574853.denovo.26, whole genome shotgun sequence	29375..29636		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNTUB010000020.1 Salmonella enterica strain PNUSAS359233 SAMN36021188-rid18574853.denovo.20, whole genome shotgun sequence	69965..70106																																									avrA	ABNTUB010000002.1	143595..144463	100	869	0						
GCA_032648745.1_PDT001793436.1_genomic.fna	Salmonella_enterica	0.5212	340.687 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_46	99	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_46	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTUD010000001.1 Salmonella enterica strain PNUSAS359421 SAMN36036572-rid18574803.denovo.01, whole genome shotgun sequence	454217..454654	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNTUD010000043.1 Salmonella enterica strain PNUSAS359421 SAMN36036572-rid18574803.guided.25, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	98.45	193 / 193	ABNTUD010000035.1 Salmonella enterica strain PNUSAS359421 SAMN36036572-rid18574803.denovo.38, whole genome shotgun sequence	1160..1352	enterobacteriales	IncFIB(S)	99.69	643 / 643	ABNTUD010000025.1 Salmonella enterica strain PNUSAS359421 SAMN36036572-rid18574803.denovo.26, whole genome shotgun sequence	24664..25306		enterobacteriales	IncFII(S)	100	262 / 262	ABNTUD010000025.1 Salmonella enterica strain PNUSAS359421 SAMN36036572-rid18574803.denovo.26, whole genome shotgun sequence	9319..9580																																									avrA	ABNTUD010000005.1	174798..175667	99.77	870	0						
GCA_032648795.1_PDT001793434.1_genomic.fna	Salmonella_enterica	0.5209	203.759 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTUE010000001.1 Salmonella enterica strain 23TN05CB04N-S SAMN36020764-rid18574793.denovo.01, whole genome shotgun sequence	573954..574391	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTUE010000027.1 Salmonella enterica strain 23TN05CB04N-S SAMN36020764-rid18574793.denovo.27, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTUE010000027.1 Salmonella enterica strain 23TN05CB04N-S SAMN36020764-rid18574793.denovo.27, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNTUE010000060.1 Salmonella enterica strain 23TN05CB04N-S SAMN36020764-rid18574793.guided.35, whole genome shotgun sequence	12087..12524	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTUE010000061.1 Salmonella enterica strain 23TN05CB04N-S SAMN36020764-rid18574793.guided.40, whole genome shotgun sequence	1205..1996	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTUE010000061.1 Salmonella enterica strain 23TN05CB04N-S SAMN36020764-rid18574793.guided.40, whole genome shotgun sequence	1205..1996	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNTUE010000027.1 Salmonella enterica strain 23TN05CB04N-S SAMN36020764-rid18574793.denovo.27, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTUE010000061.1 Salmonella enterica strain 23TN05CB04N-S SAMN36020764-rid18574793.guided.40, whole genome shotgun sequence	2501..3340	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTUE010000027.1 Salmonella enterica strain 23TN05CB04N-S SAMN36020764-rid18574793.denovo.27, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTUE010000062.1 Salmonella enterica strain 23TN05CB04N-S SAMN36020764-rid18574793.guided.42, whole genome shotgun sequence	4431..5630	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNTUE010000032.1 Salmonella enterica strain 23TN05CB04N-S SAMN36020764-rid18574793.denovo.33, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX1	98.93	374 / 374	ABNTUE010000028.1 Salmonella enterica strain 23TN05CB04N-S SAMN36020764-rid18574793.denovo.28, whole genome shotgun sequence	32011..32384																																																avrA	ABNTUE010000002.1	94091..94960	99.655	870	0						
GCA_032649615.1_PDT001793432.1_genomic.fna	Salmonella_enterica	0.5204	490.115 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTUH010000001.1 Salmonella enterica strain PNUSAS359414 SAMN36036578-rid18574773.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTUH010000027.1 Salmonella enterica strain PNUSAS359414 SAMN36036578-rid18574773.guided.23, whole genome shotgun sequence	2620..3057	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTUH010000019.1 Salmonella enterica strain PNUSAS359414 SAMN36036578-rid18574773.denovo.20, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNTUH010000020.1 Salmonella enterica strain PNUSAS359414 SAMN36036578-rid18574773.denovo.22, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.93	374 / 374	ABNTUH010000015.1 Salmonella enterica strain PNUSAS359414 SAMN36036578-rid18574773.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNTUH010000002.1	553690..554559	99.54	870	0						
GCA_032649625.1_PDT001793433.1_genomic.fna	Salmonella_enterica	0.5223	292.236 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNTUF010000001.1 Salmonella enterica strain PNUSAS359232 SAMN36021190-rid18574783.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNTUF010000040.1 Salmonella enterica strain PNUSAS359232 SAMN36021190-rid18574783.guided.28, whole genome shotgun sequence	193..630	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNTUF010000027.1 Salmonella enterica strain PNUSAS359232 SAMN36021190-rid18574783.denovo.30, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNTUF010000029.1 Salmonella enterica strain PNUSAS359232 SAMN36021190-rid18574783.denovo.32, whole genome shotgun sequence	2528..2639																																																avrA	ABNTUF010000008.1	94166..95034	99.425	870	0						
GCA_032651005.1_PDT001792355.1_genomic.fna	Salmonella_enterica	0.5208	775.343 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTVO010000001.1 Salmonella enterica strain PNUSAS359350 SAMN36026028-rid18572713.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNTVO010000022.1 Salmonella enterica strain PNUSAS359350 SAMN36026028-rid18572713.guided.17, whole genome shotgun sequence	4024..4461	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNTVO010000002.1	783580..784449	99.77	870	0						
GCA_032651025.1_PDT001792354.1_genomic.fna	Salmonella_enterica	0.5209	225.842 KB	8	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTVP010000001.1 Salmonella enterica strain PNUSAS359349 SAMN36026025-rid18572703.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTVP010000037.1 Salmonella enterica strain PNUSAS359349 SAMN36026025-rid18572703.guided.27, whole genome shotgun sequence	20584..21021	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNTVP010000023.1 Salmonella enterica strain PNUSAS359349 SAMN36026025-rid18572703.denovo.23, whole genome shotgun sequence	34958..35491																																																						avrA	ABNTVP010000008.1	188016..188885	99.425	870	0						
GCA_032651805.1_PDT001792350.1_genomic.fna	Salmonella_enterica	0.5206	286.033 KB	5	aroC_84,dnaN_342,hemD_256,hisD_435,purE_378,sucA_182,thrA_362	1456	18:b:1,5	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_342	hemD	100	100	hemD_256	hisD	100	100	hisD_435	purE	100	100	purE_378	sucA	100	100	sucA_182	thrA	100	100	thrA_362	18	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fluntern		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTVU010000001.1 Salmonella enterica strain PNUSAS359336 SAMN36026035-rid18572663.denovo.01, whole genome shotgun sequence	161277..161714	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTVU010000052.1 Salmonella enterica strain PNUSAS359336 SAMN36026035-rid18572663.guided.27, whole genome shotgun sequence	2279..2716	Amikacin, Tobramycin	NC_003197	fosA7	99.76	423/423	ABNTVU010000003.1 Salmonella enterica strain PNUSAS359336 SAMN36026035-rid18572663.denovo.03, whole genome shotgun sequence	389382..389804	Fosfomycin	LAPJ01000014	fosA7	99.76	423/423	ABNTVU010000051.1 Salmonella enterica strain PNUSAS359336 SAMN36026035-rid18572663.guided.26, whole genome shotgun sequence	19428..19850	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTVU010000002.1	564530..565399	98.621	870	0						
GCA_032651825.1_PDT001792352.1_genomic.fna	Salmonella_enterica	0.5212	643.635 KB	3	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	7	aac(6')-Iaa,aadA7,aac(3)-Id,aph(3')-Ia,aac(6')-Iaa,aadA7,aac(3)-Id,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	1	IncFIB(pHCM2)	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTVT010000001.1 Salmonella enterica strain PNUSAS359379 SAMN36026429-rid18572683.denovo.01, whole genome shotgun sequence	988241..988678	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	ABNTVT010000017.1 Salmonella enterica strain PNUSAS359379 SAMN36026429-rid18572683.denovo.21, whole genome shotgun sequence	11943..12740	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	ABNTVT010000017.1 Salmonella enterica strain PNUSAS359379 SAMN36026429-rid18572683.denovo.21, whole genome shotgun sequence	12816..13292	Gentamicin, Astromicin, Fortimicin	AB114632	aph(3')-Ia	100	816/816	ABNTVT010000040.1 Salmonella enterica strain PNUSAS359379 SAMN36026429-rid18572683.denovo.46, whole genome shotgun sequence	135..950	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	V00359	aac(6')-Iaa	98.63	438/438	ABNTVT010000047.1 Salmonella enterica strain PNUSAS359379 SAMN36026429-rid18572683.guided.18, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	ABNTVT010000048.1 Salmonella enterica strain PNUSAS359379 SAMN36026429-rid18572683.guided.20, whole genome shotgun sequence	1699..2496	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	ABNTVT010000048.1 Salmonella enterica strain PNUSAS359379 SAMN36026429-rid18572683.guided.20, whole genome shotgun sequence	1147..1623	Gentamicin, Astromicin, Fortimicin	AB114632	aph(3')-Ia	100	816/816	ABNTVT010000050.1 Salmonella enterica strain PNUSAS359379 SAMN36026429-rid18572683.guided.45, whole genome shotgun sequence	126..941	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	V00359	blaTEM-1B	100	861/861	ABNTVT010000039.1 Salmonella enterica strain PNUSAS359379 SAMN36026429-rid18572683.denovo.44, whole genome shotgun sequence	406..1266	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNTVT010000049.1 Salmonella enterica strain PNUSAS359379 SAMN36026429-rid18572683.guided.42, whole genome shotgun sequence	126..986	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	ABNTVT010000017.1 Salmonella enterica strain PNUSAS359379 SAMN36026429-rid18572683.denovo.21, whole genome shotgun sequence	10599..11438	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTVT010000048.1 Salmonella enterica strain PNUSAS359379 SAMN36026429-rid18572683.guided.20, whole genome shotgun sequence	3001..3840	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTVT010000017.1 Salmonella enterica strain PNUSAS359379 SAMN36026429-rid18572683.denovo.21, whole genome shotgun sequence	2341..3540	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTVT010000048.1 Salmonella enterica strain PNUSAS359379 SAMN36026429-rid18572683.guided.20, whole genome shotgun sequence	10899..12098	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	IncFIB(pHCM2)	97.4	884 / 875	ABNTVT010000023.1 Salmonella enterica strain PNUSAS359379 SAMN36026429-rid18572683.denovo.27, whole genome shotgun sequence	2775..3658																																																						avrA	ABNTVT010000003.1	39431..40300	99.31	870	0						
GCA_032652125.1_PDT001927417.1_genomic.fna	Salmonella_enterica	0.5224	560.326 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNTWC010000008.1 Salmonella enterica strain PNUSAS390844 SAMN37805945-rid19705493.denovo.08, whole genome shotgun sequence	70822..71259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNTWC010000026.1 Salmonella enterica strain PNUSAS390844 SAMN37805945-rid19705493.guided.19, whole genome shotgun sequence	1816..2253	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTWC010000002.1	94228..95097	98.966	870	0						
GCA_032652345.1_PDT001927397.1_genomic.fna	Salmonella_enterica	0.5228	244.38 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTWD010000001.1 Salmonella enterica strain PNUSAS390734 SAMN37805823-rid19705413.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNTWD010000032.1 Salmonella enterica strain PNUSAS390734 SAMN37805823-rid19705413.guided.25, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTWD010000003.1	149923..150792	99.655	870	0						
GCA_032653165.1_PDT001927000.1_genomic.fna	Salmonella_enterica	0.5204	365.407 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTWH010000001.1 Salmonella enterica strain PNUSAS390612 SAMN37805560-rid19701403.denovo.01, whole genome shotgun sequence	486124..486561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTWH010000027.1 Salmonella enterica strain PNUSAS390612 SAMN37805560-rid19701403.guided.21, whole genome shotgun sequence	1054..1491	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNTWH010000011.1 Salmonella enterica strain PNUSAS390612 SAMN37805560-rid19701403.denovo.11, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNTWH010000029.1 Salmonella enterica strain PNUSAS390612 SAMN37805560-rid19701403.guided.24, whole genome shotgun sequence	517..939	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTWH010000002.1	192674..193543	99.195	870	0						
GCA_032653205.1_PDT001926999.1_genomic.fna	Salmonella_enterica	0.522	139.067 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNTWI010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325648 SAMN37805565-rid19702883.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNTWI010000075.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325648 SAMN37805565-rid19702883.guided.36, whole genome shotgun sequence	20567..21004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNTWI010000056.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325648 SAMN37805565-rid19702883.denovo.58, whole genome shotgun sequence	9255..9897	enterobacteriales	IncFII(S)	100	262 / 262	ABNTWI010000042.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325648 SAMN37805565-rid19702883.denovo.44, whole genome shotgun sequence	12608..12869																																																avrA	ABNTWI010000014.1	95312..96180	100	869	0						
GCA_032653225.1_PDT001926988.1_genomic.fna	Salmonella_enterica	0.521	246.222 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTWJ010000002.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325661 SAMN37805551-rid19701373.denovo.02, whole genome shotgun sequence	462166..462603	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTWJ010000043.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325661 SAMN37805551-rid19701373.guided.25, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTWJ010000001.1	581111..581980	99.195	870	0						
GCA_032653285.1_PDT001926986.1_genomic.fna	Salmonella_enterica	0.5209	352.387 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTWK010000005.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.denovo.05, whole genome shotgun sequence	130353..130790	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTWK010000022.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.denovo.22, whole genome shotgun sequence	8324..9160	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTWK010000022.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.denovo.22, whole genome shotgun sequence	9160..9963	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNTWK010000042.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.guided.27, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTWK010000043.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.guided.28, whole genome shotgun sequence	19122..19958	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTWK010000043.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.guided.28, whole genome shotgun sequence	18319..19122	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNTWK010000032.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.denovo.38, whole genome shotgun sequence	115..1260	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNTWK010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.guided.37, whole genome shotgun sequence	156..1301	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABNTWK010000022.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.denovo.22, whole genome shotgun sequence	3975..5188	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTWK010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.guided.34, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNTWK010000022.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.denovo.22, whole genome shotgun sequence	10024..10839	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNTWK010000043.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.guided.28, whole genome shotgun sequence	17443..18258	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNTWK010000022.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.denovo.22, whole genome shotgun sequence	5789..7063	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNTWK010000043.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.guided.28, whole genome shotgun sequence	21219..22493	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNTWK010000020.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.denovo.20, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNTWK010000017.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.denovo.17, whole genome shotgun sequence	16913..17172		enterobacteriales	IncX1	98.66	374 / 374	ABNTWK010000027.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325664 SAMN37805546-rid19704303.denovo.30, whole genome shotgun sequence	8876..9249																																									avrA	ABNTWK010000007.1	174456..175324	99.54	870	0						
GCA_032654125.1_PDT001926971.1_genomic.fna	Salmonella_enterica	0.5201	407.506 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTWL010000001.1 Salmonella enterica strain PNUSAS390628 SAMN37805533-rid19702833.denovo.01, whole genome shotgun sequence	495269..495706	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTWL010000029.1 Salmonella enterica strain PNUSAS390628 SAMN37805533-rid19702833.guided.22, whole genome shotgun sequence	2280..2717	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNTWL010000003.1 Salmonella enterica strain PNUSAS390628 SAMN37805533-rid19702833.denovo.03, whole genome shotgun sequence	388761..389183	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNTWL010000028.1 Salmonella enterica strain PNUSAS390628 SAMN37805533-rid19702833.guided.21, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTWL010000002.1	175349..176218	99.195	870	0						
GCA_032654155.1_PDT001926960.1_genomic.fna	Salmonella_enterica	0.5221	364.485 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTWP010000001.1 Salmonella enterica strain PNUSAS390590 SAMN37805520-rid19698933.denovo.01, whole genome shotgun sequence	566297..566734	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNTWP010000024.1 Salmonella enterica strain PNUSAS390590 SAMN37805520-rid19698933.guided.21, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNTWP010000002.1	553273..554142	99.655	870	0						
GCA_032654185.1_PDT001926978.1_genomic.fna	Salmonella_enterica	0.5213	261.232 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTWM010000004.1 Salmonella enterica strain PNUSAS390625 SAMN37805539-rid19701363.denovo.04, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTWM010000038.1 Salmonella enterica strain PNUSAS390625 SAMN37805539-rid19701363.guided.29, whole genome shotgun sequence	2897..3334	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNTWM010000021.1 Salmonella enterica strain PNUSAS390625 SAMN37805539-rid19701363.denovo.21, whole genome shotgun sequence	34958..35491																																																						avrA	ABNTWM010000009.1	187699..188568	99.54	870	0						
GCA_032654225.1_PDT001926967.1_genomic.fna	Salmonella_enterica	0.5212	382.344 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNTWN010000001.1 Salmonella enterica strain PNUSAS390606 SAMN37805526-rid19698943.denovo.01, whole genome shotgun sequence	482129..482566	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNTWN010000039.1 Salmonella enterica strain PNUSAS390606 SAMN37805526-rid19698943.guided.27, whole genome shotgun sequence	910..1347	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNTWN010000015.1 Salmonella enterica strain PNUSAS390606 SAMN37805526-rid19698943.denovo.15, whole genome shotgun sequence	68666..68807																																																						avrA	ABNTWN010000002.1	144915..145784	99.31	870	0						
GCA_032654325.1_PDT001926958.1_genomic.fna	Salmonella_enterica	0.5213	274.769 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTWQ010000001.1 Salmonella enterica strain PNUSAS390593 SAMN37805517-rid19701343.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTWQ010000033.1 Salmonella enterica strain PNUSAS390593 SAMN37805517-rid19701343.guided.29, whole genome shotgun sequence	3474..3911	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTWQ010000024.1 Salmonella enterica strain PNUSAS390593 SAMN37805517-rid19701343.denovo.24, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNTWQ010000026.1 Salmonella enterica strain PNUSAS390593 SAMN37805517-rid19701343.denovo.27, whole genome shotgun sequence	3446..3707																																																avrA	ABNTWQ010000002.1	553149..554018	99.54	870	0						
GCA_032654525.1_PDT001926939.1_genomic.fna	Salmonella_enterica	0.5208	225.554 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col(pHAD28),IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNTWV010000002.1 Salmonella enterica strain PNUSAS390643 SAMN37805490-rid19697693.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNTWV010000065.1 Salmonella enterica strain PNUSAS390643 SAMN37805490-rid19697693.guided.35, whole genome shotgun sequence	1796..2233	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNTWV010000042.1 Salmonella enterica strain PNUSAS390643 SAMN37805490-rid19697693.denovo.45, whole genome shotgun sequence	1251..1381	enterobacteriales	IncFIB(S)	100	643 / 643	ABNTWV010000016.1 Salmonella enterica strain PNUSAS390643 SAMN37805490-rid19697693.denovo.16, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	ABNTWV010000016.1 Salmonella enterica strain PNUSAS390643 SAMN37805490-rid19697693.denovo.16, whole genome shotgun sequence	30407..30668		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNTWV010000019.1 Salmonella enterica strain PNUSAS390643 SAMN37805490-rid19697693.denovo.19, whole genome shotgun sequence	66887..67028																																		avrA	ABNTWV010000003.1	401364..402232	100	869	0						
GCA_032654545.1_PDT001926938.1_genomic.fna	Salmonella_enterica	0.5113	280.05 KB	7	aroC_88,dnaN_26,hemD_30,hisD_84,purE_21,sucA_92,thrA_80	1845	61:c:z35	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_84	purE	100	100	purE_21	sucA	100	100	sucA_92	thrA	100	100	thrA_80	61	c	z35	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:c:z35		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTWW010000001.1 Salmonella enterica strain PNUSAS390644 SAMN37805495-rid19701313.denovo.01, whole genome shotgun sequence	111731..112168	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNTWW010000057.1 Salmonella enterica strain PNUSAS390644 SAMN37805495-rid19701313.guided.37, whole genome shotgun sequence	2522..2959	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTWW010000003.1	38252..39121	96.552	870	0						
GCA_032654605.1_PDT001926935.1_genomic.fna	Salmonella_enterica	0.5213	245.701 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTWX010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325643 SAMN37805494-rid19698903.denovo.04, whole genome shotgun sequence	50920..51357	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTWX010000046.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325643 SAMN37805494-rid19698903.guided.33, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTWX010000032.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325643 SAMN37805494-rid19698903.denovo.32, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNTWX010000033.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325643 SAMN37805494-rid19698903.denovo.35, whole genome shotgun sequence	4323..4584																																																avrA	ABNTWX010000008.1	149516..150385	99.54	870	0						
GCA_032654665.1_PDT001926930.1_genomic.fna	Salmonella_enterica	0.5218	381.132 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNTWY010000007.1 Salmonella enterica strain PNUSAS390649 SAMN37805488-rid19700043.denovo.07, whole genome shotgun sequence	145042..145479	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNTWY010000029.1 Salmonella enterica strain PNUSAS390649 SAMN37805488-rid19700043.guided.17, whole genome shotgun sequence	1873..2310	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTWY010000001.1	563265..564134	99.77	870	0						
GCA_032654725.1_PDT001926922.1_genomic.fna	Salmonella_enterica	0.5219	73.596 KB	25	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,floR,floR,sul2,sul2,tet(A),tet(A)	0		4	ColRNAI,IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTXA010000003.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325602 SAMN37805477-rid19702753.denovo.003, whole genome shotgun sequence	52349..52786	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTXA010000059.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325602 SAMN37805477-rid19702753.denovo.059, whole genome shotgun sequence	23570..24406	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTXA010000059.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325602 SAMN37805477-rid19702753.denovo.059, whole genome shotgun sequence	22767..23570	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNTXA010000119.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325602 SAMN37805477-rid19702753.guided.087, whole genome shotgun sequence	4428..4865	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTXA010000121.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325602 SAMN37805477-rid19702753.guided.091, whole genome shotgun sequence	3231..4067	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTXA010000121.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325602 SAMN37805477-rid19702753.guided.091, whole genome shotgun sequence	2428..3231	Streptomycin	AF321551	floR	98.19	1214/1215	ABNTXA010000059.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325602 SAMN37805477-rid19702753.denovo.059, whole genome shotgun sequence	27542..28755	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTXA010000122.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325602 SAMN37805477-rid19702753.guided.097, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNTXA010000059.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325602 SAMN37805477-rid19702753.denovo.059, whole genome shotgun sequence	21891..22706	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNTXA010000121.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325602 SAMN37805477-rid19702753.guided.091, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNTXA010000059.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325602 SAMN37805477-rid19702753.denovo.059, whole genome shotgun sequence	25667..26941	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNTXA010000121.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325602 SAMN37805477-rid19702753.guided.091, whole genome shotgun sequence	5328..6602	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	ColRNAI	90.08	131 / 130	ABNTXA010000104.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325602 SAMN37805477-rid19702753.denovo.109, whole genome shotgun sequence	543..673	enterobacteriales	IncC	100	417 / 417	ABNTXA010000076.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325602 SAMN37805477-rid19702753.denovo.077, whole genome shotgun sequence	17493..17909		enterobacteriales	IncFII(S)	97.71	262 / 262	ABNTXA010000030.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325602 SAMN37805477-rid19702753.denovo.030, whole genome shotgun sequence	19351..19610		enterobacteriales	IncX1	98.66	374 / 374	ABNTXA010000030.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325602 SAMN37805477-rid19702753.denovo.030, whole genome shotgun sequence	55205..55578																																		avrA	ABNTXA010000002.1	174189..175057	99.54	870	0						
GCA_032654745.1_PDT001926921.1_genomic.fna	Salmonella_enterica	0.5207	178.101 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTXB010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325617 SAMN37805478-rid19704213.denovo.01, whole genome shotgun sequence	236395..236832	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTXB010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325617 SAMN37805478-rid19704213.denovo.32, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTXB010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325617 SAMN37805478-rid19704213.denovo.32, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNTXB010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325617 SAMN37805478-rid19704213.guided.37, whole genome shotgun sequence	8846..9283	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTXB010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325617 SAMN37805478-rid19704213.guided.48, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTXB010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325617 SAMN37805478-rid19704213.guided.48, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNTXB010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325617 SAMN37805478-rid19704213.denovo.32, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTXB010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325617 SAMN37805478-rid19704213.guided.48, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTXB010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325617 SAMN37805478-rid19704213.denovo.32, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTXB010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325617 SAMN37805478-rid19704213.guided.35, whole genome shotgun sequence	10616..11815	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNTXB010000023.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325617 SAMN37805478-rid19704213.denovo.23, whole genome shotgun sequence	58618..59177	enterobacteriales	IncX1	98.94	377 / 377	ABNTXB010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325617 SAMN37805478-rid19704213.denovo.31, whole genome shotgun sequence	6228..6604																																																avrA	ABNTXB010000003.1	149828..150697	99.655	870	0						
GCA_032654775.1_PDT001926920.1_genomic.fna	Salmonella_enterica	0.5221	83.008 KB	18	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTXC010000007.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325601 SAMN37805476-rid19700033.denovo.007, whole genome shotgun sequence	12420..12857	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTXC010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325601 SAMN37805476-rid19700033.denovo.049, whole genome shotgun sequence	23570..24406	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTXC010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325601 SAMN37805476-rid19700033.denovo.049, whole genome shotgun sequence	22767..23570	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNTXC010000119.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325601 SAMN37805476-rid19700033.guided.075, whole genome shotgun sequence	909..1346	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTXC010000120.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325601 SAMN37805476-rid19700033.guided.080, whole genome shotgun sequence	4793..5629	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTXC010000120.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325601 SAMN37805476-rid19700033.guided.080, whole genome shotgun sequence	3990..4793	Streptomycin	AF321551	floR	98.19	1214/1215	ABNTXC010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325601 SAMN37805476-rid19700033.denovo.049, whole genome shotgun sequence	27542..28755	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTXC010000121.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325601 SAMN37805476-rid19700033.guided.096, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNTXC010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325601 SAMN37805476-rid19700033.denovo.049, whole genome shotgun sequence	21891..22706	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNTXC010000120.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325601 SAMN37805476-rid19700033.guided.080, whole genome shotgun sequence	3114..3929	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNTXC010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325601 SAMN37805476-rid19700033.denovo.049, whole genome shotgun sequence	25667..26941	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNTXC010000120.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325601 SAMN37805476-rid19700033.guided.080, whole genome shotgun sequence	6890..8164	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncC	100	417 / 417	ABNTXC010000068.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325601 SAMN37805476-rid19700033.denovo.068, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNTXC010000023.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325601 SAMN37805476-rid19700033.denovo.023, whole genome shotgun sequence	29335..29594		enterobacteriales	IncX1	98.66	374 / 374	ABNTXC010000023.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325601 SAMN37805476-rid19700033.denovo.023, whole genome shotgun sequence	65189..65562																																									avrA	ABNTXC010000011.1	109240..110108	99.54	870	0						
GCA_032654845.1_PDT001926919.1_genomic.fna	Salmonella_enterica	0.5211	123.859 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,sul1,tet(A),tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTXD010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325618 SAMN37805479-rid19704203.denovo.01, whole genome shotgun sequence	477898..478335	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTXD010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325618 SAMN37805479-rid19704203.denovo.39, whole genome shotgun sequence	1243..2034	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTXD010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325618 SAMN37805479-rid19704203.denovo.39, whole genome shotgun sequence	1243..2034	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNTXD010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325618 SAMN37805479-rid19704203.guided.40, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTXD010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325618 SAMN37805479-rid19704203.guided.40, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNTXD010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325618 SAMN37805479-rid19704203.guided.41, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTXD010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325618 SAMN37805479-rid19704203.guided.41, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNTXD010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325618 SAMN37805479-rid19704203.guided.58, whole genome shotgun sequence	5301..5738	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNTXD010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325618 SAMN37805479-rid19704203.denovo.39, whole genome shotgun sequence	2539..3378	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTXD010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325618 SAMN37805479-rid19704203.guided.40, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTXD010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325618 SAMN37805479-rid19704203.guided.41, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTXD010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325618 SAMN37805479-rid19704203.denovo.39, whole genome shotgun sequence	15895..17094	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTXD010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325618 SAMN37805479-rid19704203.guided.40, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNTXD010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325618 SAMN37805479-rid19704203.guided.41, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNTXD010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325618 SAMN37805479-rid19704203.denovo.52, whole genome shotgun sequence	9109..9668																																																						avrA	ABNTXD010000004.1	149551..150420	99.655	870	0						
GCA_032654885.1_PDT001927589.1_genomic.fna	Salmonella_enterica	0.5214	444.049 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTXE010000001.1 Salmonella enterica strain PNUSAS390861 SAMN37805965-rid19704703.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNTXE010000032.1 Salmonella enterica strain PNUSAS390861 SAMN37805965-rid19704703.guided.19, whole genome shotgun sequence	33975..34412	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTXE010000002.1	149828..150697	99.655	870	0						
GCA_032654895.1_PDT001927410.1_genomic.fna	Salmonella_enterica	0.5221	524.704 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTXF010000001.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.denovo.01, whole genome shotgun sequence	172127..172564	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNTXF010000024.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.denovo.28, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNTXF010000031.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.guided.15, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNTXF010000035.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.guided.31, whole genome shotgun sequence	2811..3590	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNTXF010000024.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.denovo.28, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNTXF010000035.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.guided.31, whole genome shotgun sequence	1815..2681	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNTXF010000023.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.denovo.27, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNTXF010000033.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.guided.26, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNTXF010000020.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.denovo.23, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTXF010000034.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.guided.30, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNTXF010000024.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.denovo.28, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNTXF010000035.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.guided.31, whole genome shotgun sequence	899..1555	Ciprofloxacin	AY070235	sul1	100	840/840	ABNTXF010000026.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.denovo.34, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTXF010000037.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.guided.33, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNTXF010000020.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.denovo.23, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNTXF010000036.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.guided.32, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNTXF010000020.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.denovo.23, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNTXF010000036.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.guided.32, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNTXF010000017.1 Salmonella enterica strain PNUSAS390744 SAMN37805832-rid19705463.denovo.19, whole genome shotgun sequence	8402..8652																																																						avrA	ABNTXF010000002.1	553353..554222	99.77	870	0						
GCA_032654975.1_PDT001927402.1_genomic.fna	Salmonella_enterica	0.5219	257.837 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNTXH010000002.1 Salmonella enterica strain PNUSAS390745 SAMN37805825-rid19705433.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNTXH010000046.1 Salmonella enterica strain PNUSAS390745 SAMN37805825-rid19705433.guided.29, whole genome shotgun sequence	20567..21004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNTXH010000016.1 Salmonella enterica strain PNUSAS390745 SAMN37805825-rid19705433.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNTXH010000016.1 Salmonella enterica strain PNUSAS390745 SAMN37805825-rid19705433.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABNTXH010000001.1	446730..447598	100	869	0						
GCA_032655005.1_PDT001927407.1_genomic.fna	Salmonella_enterica	0.52	559.955 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pSL483	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	-	Salmonella enterica subspecies enterica (subspecies I)	I 9:l,z28:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNTXG010000001.1 Salmonella enterica strain PNUSAS390743 SAMN37805833-rid19705453.denovo.01, whole genome shotgun sequence	805848..806285	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNTXG010000023.1 Salmonella enterica strain PNUSAS390743 SAMN37805833-rid19705453.guided.16, whole genome shotgun sequence	8037..8474	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pSL483	99.9	995 / 995	ABNTXG010000012.1 Salmonella enterica strain PNUSAS390743 SAMN37805833-rid19705453.denovo.12, whole genome shotgun sequence	23337..24331																																																						avrA	ABNTXG010000002.1	556317..557185	99.425	870	0						
GCA_032655045.1_PDT001927370.1_genomic.fna	Salmonella_enterica	0.5202	501.132 KB	5	aroC_104,dnaN_100,hemD_54,hisD_78,purE_104,sucA_9,thrA_48	292	8:z4,z24:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_104	dnaN	100	100	dnaN_100	hemD	100	100	hemD_54	hisD	100	100	hisD_78	purE	100	100	purE_104	sucA	100	100	sucA_9	thrA	100	100	thrA_48	8	z4,z24	-	Salmonella enterica subspecies enterica (subspecies I)	Albany or Duesseldorf	The predicted serotypes share the same general formula: 8:z4,z24:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTXI010000001.1 Salmonella enterica strain PNUSAS390688 SAMN37805675-rid19704643.denovo.01, whole genome shotgun sequence	483334..483771	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTXI010000027.1 Salmonella enterica strain PNUSAS390688 SAMN37805675-rid19704643.guided.12, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTXI010000002.1	39536..40405	99.08	870	0						
GCA_032655075.1_PDT001927365.1_genomic.fna	Salmonella_enterica	0.5198	466.66 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTXJ010000001.1 Salmonella enterica strain PNUSAS390626 SAMN37805678-rid19705383.denovo.01, whole genome shotgun sequence	287377..287814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTXJ010000025.1 Salmonella enterica strain PNUSAS390626 SAMN37805678-rid19705383.guided.22, whole genome shotgun sequence	6..443	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNTXJ010000018.1 Salmonella enterica strain PNUSAS390626 SAMN37805678-rid19705383.denovo.20, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNTXJ010000012.1 Salmonella enterica strain PNUSAS390626 SAMN37805678-rid19705383.denovo.12, whole genome shotgun sequence	6118..6651		enterobacteriales	IncX1	98.4	374 / 374	ABNTXJ010000015.1 Salmonella enterica strain PNUSAS390626 SAMN37805678-rid19705383.denovo.15, whole genome shotgun sequence	6956..7329																																									avrA	ABNTXJ010000008.1	150695..151565	99.196	871	0						
GCA_032655105.1_PDT001927340.1_genomic.fna	Salmonella_enterica	0.5203	367.502 KB	6	aroC_230,dnaN_38,hemD_244,hisD_407,purE_359,sucA_216,thrA_209	1088	42:z36:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_230	dnaN	100	100	dnaN_38	hemD	100	100	hemD_244	hisD	100	100	hisD_407	purE	100	100	purE_359	sucA	100	100	sucA_216	thrA	100	100	thrA_209	42	z36	-	Salmonella enterica subspecies enterica (subspecies I)	Weslaco		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032655205.1_PDT001926931.1_genomic.fna	Salmonella_enterica	0.5212	476.57 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTXN010000001.1 Salmonella enterica strain PNUSAS390647 SAMN37805498-rid19704243.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTXN010000030.1 Salmonella enterica strain PNUSAS390647 SAMN37805498-rid19704243.guided.19, whole genome shotgun sequence	11142..11579	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTXN010000016.1 Salmonella enterica strain PNUSAS390647 SAMN37805498-rid19704243.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNTXN010000016.1 Salmonella enterica strain PNUSAS390647 SAMN37805498-rid19704243.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNTXN010000002.1	553102..553971	99.54	870	0						
GCA_032655305.1_PDT001926927.1_genomic.fna	Salmonella_enterica	0.5195	115.64 KB	15	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTXO010000007.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325621 SAMN37805489-rid19697673.denovo.07, whole genome shotgun sequence	52900..53337	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTXO010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325621 SAMN37805489-rid19697673.denovo.52, whole genome shotgun sequence	16692..17528	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTXO010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325621 SAMN37805489-rid19697673.denovo.52, whole genome shotgun sequence	17528..18331	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNTXO010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325621 SAMN37805489-rid19697673.guided.67, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNTXO010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325621 SAMN37805489-rid19697673.guided.67, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNTXO010000086.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325621 SAMN37805489-rid19697673.guided.68, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTXO010000086.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325621 SAMN37805489-rid19697673.guided.68, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aac(6')-Iaa	98.42	380/438	ABNTXO010000088.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325621 SAMN37805489-rid19697673.guided.75, whole genome shotgun sequence	1..380	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNTXO010000063.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325621 SAMN37805489-rid19697673.denovo.63, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNTXO010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325621 SAMN37805489-rid19697673.guided.64, whole genome shotgun sequence	4110..5315	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNTXO010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325621 SAMN37805489-rid19697673.denovo.60, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNTXO010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325621 SAMN37805489-rid19697673.denovo.52, whole genome shotgun sequence	15808..16069		enterobacteriales	IncX1	100	373 / 373	ABNTXO010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325621 SAMN37805489-rid19697673.denovo.57, whole genome shotgun sequence	2153..2525																																									avrA	ABNTXO010000021.1	5382..6251	99.655	870	0						
GCA_032655325.1_PDT001926918.1_genomic.fna	Salmonella_enterica	0.5236	56.651 KB	22	aroC_22,dnaN_104,hemD_25,hisD_113,purE_12,sucA_83,thrA_4	308	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_25	hisD	100	100	hisD_113	purE	100	100	purE_12	sucA	100	100	sucA_83	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNTXP010000001.1 Salmonella enterica subsp. enterica serovar Poona strain FSIS12325619 SAMN37805469-rid19701283.denovo.001, whole genome shotgun sequence	55067..55504	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNTXP010000140.1 Salmonella enterica subsp. enterica serovar Poona strain FSIS12325619 SAMN37805469-rid19701283.guided.083, whole genome shotgun sequence	2234..2671	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTXP010000004.1	61634..62503	99.655	870	0						
GCA_032655345.1_PDT001926917.1_genomic.fna	Salmonella_enterica	0.5224	397.494 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),ColpVC	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTXR010000001.1 Salmonella enterica strain PNUSAS390586 SAMN37805474-rid19702743.denovo.01, whole genome shotgun sequence	375392..375829	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNTXR010000039.1 Salmonella enterica strain PNUSAS390586 SAMN37805474-rid19702743.guided.27, whole genome shotgun sequence	14081..14518	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNTXR010000026.1 Salmonella enterica strain PNUSAS390586 SAMN37805474-rid19702743.denovo.29, whole genome shotgun sequence	2913..3043	enterobacteriales	ColpVC	96.89	193 / 193	ABNTXR010000030.1 Salmonella enterica strain PNUSAS390586 SAMN37805474-rid19702743.denovo.33, whole genome shotgun sequence	1524..1716																																																avrA	ABNTXR010000014.1	94005..94855	99.06	851	0						
GCA_032655385.1_PDT001926911.1_genomic.fna	Salmonella_enterica	0.5211	151.387 KB	11	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTXS010000001.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325599 SAMN37805472-rid19704193.denovo.01, whole genome shotgun sequence	246186..246623	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTXS010000033.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325599 SAMN37805472-rid19704193.denovo.34, whole genome shotgun sequence	23570..24406	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTXS010000033.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325599 SAMN37805472-rid19704193.denovo.34, whole genome shotgun sequence	22767..23570	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNTXS010000063.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325599 SAMN37805472-rid19704193.guided.33, whole genome shotgun sequence	15674..16111	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTXS010000065.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325599 SAMN37805472-rid19704193.guided.50, whole genome shotgun sequence	3231..4067	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTXS010000065.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325599 SAMN37805472-rid19704193.guided.50, whole genome shotgun sequence	2428..3231	Streptomycin	AF321551	floR	98.19	1214/1215	ABNTXS010000033.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325599 SAMN37805472-rid19704193.denovo.34, whole genome shotgun sequence	27542..28755	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTXS010000067.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325599 SAMN37805472-rid19704193.guided.55, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNTXS010000033.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325599 SAMN37805472-rid19704193.denovo.34, whole genome shotgun sequence	21891..22706	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNTXS010000065.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325599 SAMN37805472-rid19704193.guided.50, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNTXS010000033.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325599 SAMN37805472-rid19704193.denovo.34, whole genome shotgun sequence	25667..26941	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNTXS010000065.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325599 SAMN37805472-rid19704193.guided.50, whole genome shotgun sequence	5328..6602	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncC	100	417 / 417	ABNTXS010000041.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325599 SAMN37805472-rid19704193.denovo.42, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNTXS010000029.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325599 SAMN37805472-rid19704193.denovo.29, whole genome shotgun sequence	16913..17172		enterobacteriales	IncX1	98.66	374 / 374	ABNTXS010000029.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325599 SAMN37805472-rid19704193.denovo.29, whole genome shotgun sequence	52767..53140																																									avrA	ABNTXS010000006.1	147966..148834	99.54	870	0						
GCA_032655415.1_PDT001926912.1_genomic.fna	Salmonella_enterica	0.5221	233.499 KB	6	aroC_43,dnaN_41,hemD_16,hisD_13,purE_41,sucA_13,thrA_4	2328	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_41	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTXQ010000006.1 Salmonella enterica strain PNUSAS390585 SAMN37805468-rid19702733.denovo.06, whole genome shotgun sequence	80769..81206	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTXQ010000033.1 Salmonella enterica strain PNUSAS390585 SAMN37805468-rid19702733.guided.23, whole genome shotgun sequence	19600..20037	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032655465.1_PDT001926909.1_genomic.fna	Salmonella_enterica	0.5193	366.786 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTXT010000001.1 Salmonella enterica strain PNUSAS390465 SAMN37805431-rid19704183.denovo.01, whole genome shotgun sequence	477150..477587	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTXT010000034.1 Salmonella enterica strain PNUSAS390465 SAMN37805431-rid19704183.guided.14, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNTXT010000023.1 Salmonella enterica strain PNUSAS390465 SAMN37805431-rid19704183.denovo.26, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNTXT010000016.1 Salmonella enterica strain PNUSAS390465 SAMN37805431-rid19704183.denovo.18, whole genome shotgun sequence	2465..2998		enterobacteriales	IncX1	98.4	374 / 374	ABNTXT010000019.1 Salmonella enterica strain PNUSAS390465 SAMN37805431-rid19704183.denovo.21, whole genome shotgun sequence	6956..7329																																									avrA	ABNTXT010000011.1	150695..151565	99.196	871	0						
GCA_032655525.1_PDT001926903.1_genomic.fna	Salmonella_enterica	0.522	493.598 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTXU010000001.1 Salmonella enterica strain PNUSAS390460 SAMN37805433-rid19701263.denovo.01, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNTXU010000020.1 Salmonella enterica strain PNUSAS390460 SAMN37805433-rid19701263.guided.13, whole genome shotgun sequence	35574..36011	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNTXU010000004.1	401296..402165	99.655	870	0						
GCA_032655545.1_PDT001926899.1_genomic.fna	Salmonella_enterica	0.5204	162.301 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncI1-I(Alpha),IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTXV010000001.1 Salmonella enterica strain PNUSAS390486 SAMN37805430-rid19704173.denovo.01, whole genome shotgun sequence	145413..145850	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNTXV010000054.1 Salmonella enterica strain PNUSAS390486 SAMN37805430-rid19704173.guided.43, whole genome shotgun sequence	8794..9231	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNTXV010000016.1 Salmonella enterica strain PNUSAS390486 SAMN37805430-rid19704173.denovo.16, whole genome shotgun sequence	79228..79369	enterobacteriales	IncX4	100	374 / 374	ABNTXV010000036.1 Salmonella enterica strain PNUSAS390486 SAMN37805430-rid19704173.denovo.36, whole genome shotgun sequence	2149..2522																																																avrA	ABNTXV010000005.1	39871..40739	99.77	870	0						
GCA_032655585.1_PDT001926898.1_genomic.fna	Salmonella_enterica	0.5217	203.812 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTXW010000001.1 Salmonella enterica strain PNUSAS390484 SAMN37805426-rid19700013.denovo.01, whole genome shotgun sequence	460174..460611	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTXW010000029.1 Salmonella enterica strain PNUSAS390484 SAMN37805426-rid19700013.denovo.29, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTXW010000029.1 Salmonella enterica strain PNUSAS390484 SAMN37805426-rid19700013.denovo.29, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNTXW010000056.1 Salmonella enterica strain PNUSAS390484 SAMN37805426-rid19700013.guided.37, whole genome shotgun sequence	15796..16233	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTXW010000058.1 Salmonella enterica strain PNUSAS390484 SAMN37805426-rid19700013.guided.42, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTXW010000058.1 Salmonella enterica strain PNUSAS390484 SAMN37805426-rid19700013.guided.42, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNTXW010000029.1 Salmonella enterica strain PNUSAS390484 SAMN37805426-rid19700013.denovo.29, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTXW010000058.1 Salmonella enterica strain PNUSAS390484 SAMN37805426-rid19700013.guided.42, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTXW010000029.1 Salmonella enterica strain PNUSAS390484 SAMN37805426-rid19700013.denovo.29, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTXW010000054.1 Salmonella enterica strain PNUSAS390484 SAMN37805426-rid19700013.guided.33, whole genome shotgun sequence	7519..8718	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNTXW010000034.1 Salmonella enterica strain PNUSAS390484 SAMN37805426-rid19700013.denovo.36, whole genome shotgun sequence	10191..10750																																																						avrA	ABNTXW010000003.1	39420..40289	99.655	870	0						
GCA_032656425.1_PDT001926881.1_genomic.fna	Salmonella_enterica	0.5211	478.612 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTYB010000001.1 Salmonella enterica strain PNUSAS390464 SAMN37805390-rid19701213.denovo.01, whole genome shotgun sequence	774495..774932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTYB010000024.1 Salmonella enterica strain PNUSAS390464 SAMN37805390-rid19701213.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTYB010000012.1 Salmonella enterica strain PNUSAS390464 SAMN37805390-rid19701213.denovo.14, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNTYB010000016.1 Salmonella enterica strain PNUSAS390464 SAMN37805390-rid19701213.denovo.19, whole genome shotgun sequence	3402..3663																																																avrA	ABNTYB010000002.1	553508..554377	99.54	870	0						
GCA_032656445.1_PDT001926882.1_genomic.fna	Salmonella_enterica	0.5209	223.581 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		1	IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTXZ010000001.1 Salmonella enterica strain PNUSAS390458 SAMN37805384-rid19697623.denovo.01, whole genome shotgun sequence	145228..145665	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTXZ010000034.1 Salmonella enterica strain PNUSAS390458 SAMN37805384-rid19697623.denovo.35, whole genome shotgun sequence	22743..23579	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTXZ010000034.1 Salmonella enterica strain PNUSAS390458 SAMN37805384-rid19697623.denovo.35, whole genome shotgun sequence	21940..22743	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNTXZ010000062.1 Salmonella enterica strain PNUSAS390458 SAMN37805384-rid19697623.guided.40, whole genome shotgun sequence	8067..8504	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTXZ010000064.1 Salmonella enterica strain PNUSAS390458 SAMN37805384-rid19697623.guided.43, whole genome shotgun sequence	11949..12785	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTXZ010000064.1 Salmonella enterica strain PNUSAS390458 SAMN37805384-rid19697623.guided.43, whole genome shotgun sequence	11146..11949	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNTXZ010000025.1 Salmonella enterica strain PNUSAS390458 SAMN37805384-rid19697623.denovo.25, whole genome shotgun sequence	49502..50647	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNTXZ010000065.1 Salmonella enterica strain PNUSAS390458 SAMN37805384-rid19697623.guided.47, whole genome shotgun sequence	2622..3767	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.27	1214/1215	ABNTXZ010000048.1 Salmonella enterica strain PNUSAS390458 SAMN37805384-rid19697623.denovo.54, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNTXZ010000066.1 Salmonella enterica strain PNUSAS390458 SAMN37805384-rid19697623.guided.53, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNTXZ010000034.1 Salmonella enterica strain PNUSAS390458 SAMN37805384-rid19697623.denovo.35, whole genome shotgun sequence	21064..21879	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNTXZ010000064.1 Salmonella enterica strain PNUSAS390458 SAMN37805384-rid19697623.guided.43, whole genome shotgun sequence	10270..11085	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNTXZ010000034.1 Salmonella enterica strain PNUSAS390458 SAMN37805384-rid19697623.denovo.35, whole genome shotgun sequence	24840..26114	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNTXZ010000064.1 Salmonella enterica strain PNUSAS390458 SAMN37805384-rid19697623.guided.43, whole genome shotgun sequence	14046..15320	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABNTXZ010000026.1 Salmonella enterica strain PNUSAS390458 SAMN37805384-rid19697623.denovo.26, whole genome shotgun sequence	18293..18709																																																						avrA	ABNTXZ010000006.1	94133..95002	99.885	870	0						
GCA_032656465.1_PDT001926894.1_genomic.fna	Salmonella_enterica	0.5208	254.494 KB	7	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pCRY),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNTXX010000004.1 Salmonella enterica strain PNUSAS390482 SAMN37805429-rid19702683.denovo.04, whole genome shotgun sequence	262643..263080	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNTXX010000049.1 Salmonella enterica strain PNUSAS390482 SAMN37805429-rid19702683.guided.33, whole genome shotgun sequence	12910..13347	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABNTXX010000033.1 Salmonella enterica strain PNUSAS390482 SAMN37805429-rid19702683.denovo.34, whole genome shotgun sequence	18534..19126	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNTXX010000031.1 Salmonella enterica strain PNUSAS390482 SAMN37805429-rid19702683.denovo.31, whole genome shotgun sequence	3118..3259																																																											
GCA_032656505.1_PDT001926880.1_genomic.fna	Salmonella_enterica	0.52	165.609 KB	9	aroC_45,dnaN_14,hemD_82,hisD_9,purE_128,sucA_6,thrA_34	407	13:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_14	hemD	100	100	hemD_82	hisD	100	100	hisD_9	purE	100	100	purE_128	sucA	100	100	sucA_6	thrA	100	100	thrA_34	13	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Kintambo		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTYC010000022.1 Salmonella enterica strain PNUSAS390448 SAMN37805387-rid19698833.denovo.22, whole genome shotgun sequence	37662..38099	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNTYC010000050.1 Salmonella enterica strain PNUSAS390448 SAMN37805387-rid19698833.guided.44, whole genome shotgun sequence	2427..2864	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTYC010000051.1 Salmonella enterica strain PNUSAS390448 SAMN37805387-rid19698833.guided.45, whole genome shotgun sequence	2427..2864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032656625.1_PDT001926884.1_genomic.fna	Salmonella_enterica	0.5208	279.77 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTXY010000001.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.01, whole genome shotgun sequence	580874..581311	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNTXY010000033.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.35, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNTXY010000033.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.35, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNTXY010000056.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.64, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTXY010000056.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.64, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNTXY010000067.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.guided.23, whole genome shotgun sequence	42353..42790	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNTXY010000070.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.guided.41, whole genome shotgun sequence	6042..6833	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNTXY010000071.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.guided.42, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNTXY010000073.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.guided.63, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTXY010000073.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.guided.63, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNTXY010000054.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.61, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNTXY010000074.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.guided.66, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABNTXY010000033.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.35, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNTXY010000046.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.52, whole genome shotgun sequence	1335..2548	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABNTXY010000070.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.guided.41, whole genome shotgun sequence	7095..8354	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNTXY010000071.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.guided.42, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNTXY010000072.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.guided.59, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	770/816	ABNTXY010000053.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.60, whole genome shotgun sequence	1..770	Sulfamethoxazole	AB366440	sul2	100	770/816	ABNTXY010000053.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.60, whole genome shotgun sequence	1..770	Sulfamethoxazole	FN995456	sul2	100	770/816	ABNTXY010000053.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.60, whole genome shotgun sequence	1..770	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNTXY010000075.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.guided.71, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNTXY010000076.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.guided.72, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNTXY010000077.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.guided.73, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNTXY010000078.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.guided.74, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNTXY010000031.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNTXY010000033.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.35, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNTXY010000069.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.guided.39, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNTXY010000071.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.guided.42, whole genome shotgun sequence	4527..6446	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABNTXY010000033.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.35, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABNTXY010000070.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.guided.41, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																										enterobacteriales	Col156	94.81	154 / 154	ABNTXY010000037.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.43, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABNTXY010000051.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.57, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABNTXY010000055.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.62, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNTXY010000040.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.46, whole genome shotgun sequence	2453..3134		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNTXY010000025.1 Salmonella enterica strain PNUSAS390450 SAMN37805381-rid19704153.denovo.27, whole genome shotgun sequence	32409..32905																											avrA	ABNTXY010000002.1	402686..403555	99.885	870	0						
GCA_032656645.1_PDT001926878.1_genomic.fna	Salmonella_enterica	0.5208	766.284 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTYE010000001.1 Salmonella enterica strain PNUSAS390462 SAMN37805391-rid19699973.denovo.01, whole genome shotgun sequence	387968..388405	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNTYE010000018.1 Salmonella enterica strain PNUSAS390462 SAMN37805391-rid19699973.guided.09, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTYE010000006.1	140175..141043	99.655	870	0						
GCA_032656655.1_PDT001926879.1_genomic.fna	Salmonella_enterica	0.5217	762.445 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTYD010000001.1 Salmonella enterica strain PNUSAS390463 SAMN37805389-rid19704143.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNTYD010000018.1 Salmonella enterica strain PNUSAS390463 SAMN37805389-rid19704143.guided.08, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNTYD010000004.1	553743..554612	99.655	870	0						
GCA_032656725.1_PDT001926874.1_genomic.fna	Salmonella_enterica	0.522	332.888 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTYH010000001.1 Salmonella enterica strain PNUSAS390447 SAMN37805392-rid19704133.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNTYH010000030.1 Salmonella enterica strain PNUSAS390447 SAMN37805392-rid19704133.guided.14, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTYH010000002.1	149869..150738	99.655	870	0						
GCA_032656805.1_PDT001926877.1_genomic.fna	Salmonella_enterica	0.5205	489.747 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTYF010000001.1 Salmonella enterica strain PNUSAS390472 SAMN37805394-rid19702663.denovo.01, whole genome shotgun sequence	815084..815521	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNTYF010000015.1 Salmonella enterica strain PNUSAS390472 SAMN37805394-rid19702663.denovo.17, whole genome shotgun sequence	5951..6781	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABNTYF010000015.1 Salmonella enterica strain PNUSAS390472 SAMN37805394-rid19702663.denovo.17, whole genome shotgun sequence	6787..7590	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNTYF010000025.1 Salmonella enterica strain PNUSAS390472 SAMN37805394-rid19702663.guided.11, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNTYF010000028.1 Salmonella enterica strain PNUSAS390472 SAMN37805394-rid19702663.guided.21, whole genome shotgun sequence	5239..6069	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABNTYF010000028.1 Salmonella enterica strain PNUSAS390472 SAMN37805394-rid19702663.guided.21, whole genome shotgun sequence	4430..5233	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNTYF010000015.1 Salmonella enterica strain PNUSAS390472 SAMN37805394-rid19702663.denovo.17, whole genome shotgun sequence	4370..5230	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNTYF010000029.1 Salmonella enterica strain PNUSAS390472 SAMN37805394-rid19702663.guided.23, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNTYF010000015.1 Salmonella enterica strain PNUSAS390472 SAMN37805394-rid19702663.denovo.17, whole genome shotgun sequence	7651..8466	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNTYF010000028.1 Salmonella enterica strain PNUSAS390472 SAMN37805394-rid19702663.guided.21, whole genome shotgun sequence	3554..4369	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTYF010000012.1 Salmonella enterica strain PNUSAS390472 SAMN37805394-rid19702663.denovo.14, whole genome shotgun sequence	32995..33637	enterobacteriales	IncFII(S)	100	262 / 262	ABNTYF010000016.1 Salmonella enterica strain PNUSAS390472 SAMN37805394-rid19702663.denovo.19, whole genome shotgun sequence	3413..3674		enterobacteriales	IncX1	95.76	377 / 377	ABNTYF010000015.1 Salmonella enterica strain PNUSAS390472 SAMN37805394-rid19702663.denovo.17, whole genome shotgun sequence	18755..19131																																									avrA	ABNTYF010000002.1	553187..554056	99.54	870	0						
GCA_032656825.1_PDT001926870.1_genomic.fna	Salmonella_enterica	0.5202	470.002 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTYJ010000001.1 Salmonella enterica strain PNUSAS390461 SAMN37805388-rid19698823.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTYJ010000030.1 Salmonella enterica strain PNUSAS390461 SAMN37805388-rid19698823.guided.18, whole genome shotgun sequence	1148..1585	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTYJ010000016.1 Salmonella enterica strain PNUSAS390461 SAMN37805388-rid19698823.denovo.17, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNTYJ010000016.1 Salmonella enterica strain PNUSAS390461 SAMN37805388-rid19698823.denovo.17, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNTYJ010000017.1 Salmonella enterica strain PNUSAS390461 SAMN37805388-rid19698823.denovo.19, whole genome shotgun sequence	32011..32384																																									avrA	ABNTYJ010000013.1	28834..29703	99.54	870	0						
GCA_032656845.1_PDT001926873.1_genomic.fna	Salmonella_enterica	0.5218	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNTYI010000001.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNTYI010000024.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.denovo.26, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTYI010000024.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.denovo.26, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNTYI010000037.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.denovo.43, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNTYI010000037.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.denovo.43, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNTYI010000053.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.guided.31, whole genome shotgun sequence	7606..8043	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNTYI010000056.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.guided.42, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNTYI010000056.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.guided.42, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNTYI010000058.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.guided.47, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNTYI010000058.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.guided.47, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNTYI010000039.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.denovo.46, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNTYI010000057.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.guided.45, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNTYI010000033.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.denovo.37, whole genome shotgun sequence	3320..4533	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTYI010000055.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.guided.38, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNTYI010000024.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.denovo.26, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTYI010000058.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.guided.47, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTYI010000024.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.denovo.26, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTYI010000054.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.guided.32, whole genome shotgun sequence	11560..12759	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNTYI010000027.1 Salmonella enterica strain PNUSAS390452 SAMN37805398-rid19701203.denovo.29, whole genome shotgun sequence	9109..9668																																																						avrA	ABNTYI010000002.1	149828..150697	99.655	870	0						
GCA_032656865.1_PDT001926872.1_genomic.fna	Salmonella_enterica	0.5194	465.861 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTYG010000001.1 Salmonella enterica strain PNUSAS390457 SAMN37805386-rid19697613.denovo.01, whole genome shotgun sequence	287377..287814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTYG010000026.1 Salmonella enterica strain PNUSAS390457 SAMN37805386-rid19697613.guided.10, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNTYG010000018.1 Salmonella enterica strain PNUSAS390457 SAMN37805386-rid19697613.denovo.21, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNTYG010000012.1 Salmonella enterica strain PNUSAS390457 SAMN37805386-rid19697613.denovo.13, whole genome shotgun sequence	11193..11726		enterobacteriales	IncX1	98.4	374 / 374	ABNTYG010000015.1 Salmonella enterica strain PNUSAS390457 SAMN37805386-rid19697613.denovo.17, whole genome shotgun sequence	6956..7329																																									avrA	ABNTYG010000008.1	150695..151565	99.196	871	0						
GCA_032656925.1_PDT001926867.1_genomic.fna	Salmonella_enterica	0.5192	655.555 KB	2	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTYL010000001.1 Salmonella enterica strain PNUSAS390451 SAMN37805382-rid19702653.denovo.01, whole genome shotgun sequence	655199..655636	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTYL010000023.1 Salmonella enterica strain PNUSAS390451 SAMN37805382-rid19702653.guided.08, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNTYL010000015.1 Salmonella enterica strain PNUSAS390451 SAMN37805382-rid19702653.denovo.18, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNTYL010000010.1 Salmonella enterica strain PNUSAS390451 SAMN37805382-rid19702653.denovo.11, whole genome shotgun sequence	2740..3273		enterobacteriales	IncX1	98.4	374 / 374	ABNTYL010000012.1 Salmonella enterica strain PNUSAS390451 SAMN37805382-rid19702653.denovo.14, whole genome shotgun sequence	6956..7329																																									avrA	ABNTYL010000002.1	503991..504861	99.196	871	0						
GCA_032656955.1_PDT001926869.1_genomic.fna	Salmonella_enterica	0.5223	755.296 KB	2	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15!,purE_15!,sucA_19,thrA_17	Unknown	3,10:l,z13:1,5	6	aac(6')-Iaa,aac(6')-Iaa,floR,floR,qnrS1,qnrS1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15!	purE	100	100	purE_15!	sucA	100	100	sucA_19	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNTYK010000001.1 Salmonella enterica strain PNUSAS390467 SAMN37805397-rid19704123.denovo.01, whole genome shotgun sequence	1374393..1374830	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNTYK010000023.1 Salmonella enterica strain PNUSAS390467 SAMN37805397-rid19704123.guided.09, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	ABNTYK010000013.1 Salmonella enterica strain PNUSAS390467 SAMN37805397-rid19704123.denovo.17, whole genome shotgun sequence	6664..7877	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNTYK010000027.1 Salmonella enterica strain PNUSAS390467 SAMN37805397-rid19704123.guided.19, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNTYK010000006.1 Salmonella enterica strain PNUSAS390467 SAMN37805397-rid19704123.denovo.07, whole genome shotgun sequence	333943..334599	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNTYK010000025.1 Salmonella enterica strain PNUSAS390467 SAMN37805397-rid19704123.guided.15, whole genome shotgun sequence	47024..47680	Ciprofloxacin	AB187515	sul1	100	840/840	ABNTYK010000013.1 Salmonella enterica strain PNUSAS390467 SAMN37805397-rid19704123.denovo.17, whole genome shotgun sequence	1274..2113	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTYK010000026.1 Salmonella enterica strain PNUSAS390467 SAMN37805397-rid19704123.guided.18, whole genome shotgun sequence	991..1830	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNTYK010000013.1 Salmonella enterica strain PNUSAS390467 SAMN37805397-rid19704123.denovo.17, whole genome shotgun sequence	4789..6063	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNTYK010000026.1 Salmonella enterica strain PNUSAS390467 SAMN37805397-rid19704123.guided.18, whole genome shotgun sequence	4506..5780	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNTYK010000013.1 Salmonella enterica strain PNUSAS390467 SAMN37805397-rid19704123.denovo.17, whole genome shotgun sequence	3158..3631	Trimethoprim	X00926	dfrA1	100	474/474	ABNTYK010000026.1 Salmonella enterica strain PNUSAS390467 SAMN37805397-rid19704123.guided.18, whole genome shotgun sequence	2875..3348	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTYK010000003.1	130917..131785	99.655	869	0						
GCA_032657025.1_PDT001926866.1_genomic.fna	Salmonella_enterica	0.5182	161.067 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	9	aac(6')-Iaa,aac(6')-Iaa,aph(3'')-Ib,aph(6)-Id,blaTEM-1B,catA1,sul2,sul1,tet(B),tet(B),dfrA7	1	gyrA_p.S83F	2	IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNTYM010000010.1 Salmonella enterica strain PNUSAS390468 SAMN37805383-rid19701183.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNTYM010000072.1 Salmonella enterica strain PNUSAS390468 SAMN37805383-rid19701183.guided.30, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	99.88	804/804	ABNTYM010000073.1 Salmonella enterica strain PNUSAS390468 SAMN37805383-rid19701183.guided.60, whole genome shotgun sequence	2244..3047	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNTYM010000078.1 Salmonella enterica strain PNUSAS390468 SAMN37805383-rid19701183.guided.76, whole genome shotgun sequence	101..937	Streptomycin	M28829	blaTEM-1B	100	861/861	ABNTYM010000076.1 Salmonella enterica strain PNUSAS390468 SAMN37805383-rid19701183.guided.67, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	ABNTYM010000077.1 Salmonella enterica strain PNUSAS390468 SAMN37805383-rid19701183.guided.71, whole genome shotgun sequence	104..763	Chloramphenicol	V00622	sul2	100	816/816	ABNTYM010000073.1 Salmonella enterica strain PNUSAS390468 SAMN37805383-rid19701183.guided.60, whole genome shotgun sequence	1368..2183	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABNTYM010000074.1 Salmonella enterica strain PNUSAS390468 SAMN37805383-rid19701183.guided.61, whole genome shotgun sequence	2036..2875	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABNTYM010000052.1 Salmonella enterica strain PNUSAS390468 SAMN37805383-rid19701183.denovo.55, whole genome shotgun sequence	1203..2408	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNTYM010000075.1 Salmonella enterica strain PNUSAS390468 SAMN37805383-rid19701183.guided.65, whole genome shotgun sequence	65..1270	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA7	100	474/474	ABNTYM010000074.1 Salmonella enterica strain PNUSAS390468 SAMN37805383-rid19701183.guided.61, whole genome shotgun sequence	992..1465	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																																																											gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncHI1A	99.76	420 / 420	ABNTYM010000044.1 Salmonella enterica strain PNUSAS390468 SAMN37805383-rid19701183.denovo.47, whole genome shotgun sequence	561..980	enterobacteriales	IncHI1B(R27)	100	540 / 540	ABNTYM010000031.1 Salmonella enterica strain PNUSAS390468 SAMN37805383-rid19701183.denovo.34, whole genome shotgun sequence	22818..23357	R27																																																										
GCA_032657045.1_PDT001926865.1_genomic.fna	Salmonella_enterica	0.5212	382.566 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNTYN010000001.1 Salmonella enterica strain PNUSAS390444 SAMN37805373-rid19699943.denovo.01, whole genome shotgun sequence	542794..543231	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNTYN010000032.1 Salmonella enterica strain PNUSAS390444 SAMN37805373-rid19699943.guided.16, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTYN010000002.1	144915..145784	99.31	870	0						
GCA_032657065.1_PDT001926864.1_genomic.fna	Salmonella_enterica	0.5218	269.071 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNTYQ010000003.1 Salmonella enterica strain PNUSAS390443 SAMN37805371-rid19704113.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNTYQ010000049.1 Salmonella enterica strain PNUSAS390443 SAMN37805371-rid19704113.guided.28, whole genome shotgun sequence	10565..11002	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNTYQ010000015.1 Salmonella enterica strain PNUSAS390443 SAMN37805371-rid19704113.denovo.15, whole genome shotgun sequence	79876..80518	enterobacteriales	IncFII(S)	100	262 / 262	ABNTYQ010000015.1 Salmonella enterica strain PNUSAS390443 SAMN37805371-rid19704113.denovo.15, whole genome shotgun sequence	1748..2009																																																avrA	ABNTYQ010000006.1	95114..95982	100	869	0						
GCA_032657125.1_PDT001926863.1_genomic.fna	Salmonella_enterica	0.5215	296.234 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNTYP010000001.1 Salmonella enterica strain PNUSAS390445 SAMN37805372-rid19699933.denovo.01, whole genome shotgun sequence	481739..482176	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNTYP010000032.1 Salmonella enterica strain PNUSAS390445 SAMN37805372-rid19699933.guided.21, whole genome shotgun sequence	4771..5208	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTYP010000002.1	144854..145723	99.31	870	0						
GCA_032657225.1_PDT001926861.1_genomic.fna	Salmonella_enterica	0.5207	358.169 KB	5	aroC_10,dnaN_457,hemD_12,hisD_9*,purE_5,sucA_9,thrA_2	2072*	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	99.8003992015968	100	hisD_9*	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNTYR010000001.1 Salmonella enterica strain PNUSAS390442 SAMN37805374-rid19701173.denovo.01, whole genome shotgun sequence	591602..592039	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNTYR010000039.1 Salmonella enterica strain PNUSAS390442 SAMN37805374-rid19701173.guided.13, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNTYR010000014.1 Salmonella enterica strain PNUSAS390442 SAMN37805374-rid19701173.denovo.15, whole genome shotgun sequence	68530..69172	enterobacteriales	IncFII(S)	100	262 / 262	ABNTYR010000014.1 Salmonella enterica strain PNUSAS390442 SAMN37805374-rid19701173.denovo.15, whole genome shotgun sequence	84257..84518																																																avrA	ABNTYR010000005.1	174491..175360	99.885	870	0						
GCA_032657325.1_PDT001926857.1_genomic.fna	Salmonella_enterica	0.5206	207.445 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTYU010000002.1 Salmonella enterica strain PNUSAS390469 SAMN37805365-rid19702643.denovo.02, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNTYU010000048.1 Salmonella enterica strain PNUSAS390469 SAMN37805365-rid19702643.guided.16, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNTYU010000035.1 Salmonella enterica strain PNUSAS390469 SAMN37805365-rid19702643.denovo.38, whole genome shotgun sequence	967..1118																																																						avrA	ABNTYU010000011.1	94133..95001	99.77	870	0						
GCA_032657365.1_PDT001926856.1_genomic.fna	Salmonella_enterica	0.5213	438.302 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNTYV010000001.1 Salmonella enterica strain PNUSAS390454 SAMN37805369-rid19699923.denovo.01, whole genome shotgun sequence	835148..835585	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNTYV010000021.1 Salmonella enterica strain PNUSAS390454 SAMN37805369-rid19699923.guided.11, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTYV010000003.1	183827..184696	99.77	870	0						
GCA_032657385.1_PDT001926854.1_genomic.fna	Salmonella_enterica	0.5209	490.152 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTYY010000001.1 Salmonella enterica strain PNUSAS390455 SAMN37805366-rid19704093.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTYY010000019.1 Salmonella enterica strain PNUSAS390455 SAMN37805366-rid19704093.guided.10, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNTYY010000002.1	553499..554368	99.54	870	0						
GCA_032657425.1_PDT001926855.1_genomic.fna	Salmonella_enterica	0.5193	435.588 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTYX010000001.1 Salmonella enterica strain PNUSAS390470 SAMN37805367-rid19699913.denovo.01, whole genome shotgun sequence	145333..145770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTYX010000031.1 Salmonella enterica strain PNUSAS390470 SAMN37805367-rid19699913.guided.12, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNTYX010000021.1 Salmonella enterica strain PNUSAS390470 SAMN37805367-rid19699913.denovo.24, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNTYX010000015.1 Salmonella enterica strain PNUSAS390470 SAMN37805367-rid19699913.denovo.16, whole genome shotgun sequence	6118..6651		enterobacteriales	IncX1	98.4	374 / 374	ABNTYX010000018.1 Salmonella enterica strain PNUSAS390470 SAMN37805367-rid19699913.denovo.20, whole genome shotgun sequence	6956..7329																																									avrA	ABNTYX010000009.1	150695..151565	99.196	871	0						
GCA_032657465.1_PDT001926853.1_genomic.fna	Salmonella_enterica	0.521	660.307 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNTYW010000001.1 Salmonella enterica strain PNUSAS390456 SAMN37805368-rid19699903.denovo.01, whole genome shotgun sequence	596443..596880	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNTYW010000020.1 Salmonella enterica strain PNUSAS390456 SAMN37805368-rid19699903.guided.09, whole genome shotgun sequence	9172..9609	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTYW010000003.1	509443..510311	99.425	870	0						
GCA_032657545.1_PDT001926851.1_genomic.fna	Salmonella_enterica	0.5218	391.761 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTYZ010000001.1 Salmonella enterica strain PNUSAS390508 SAMN37805340-rid19702633.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTYZ010000034.1 Salmonella enterica strain PNUSAS390508 SAMN37805340-rid19702633.guided.23, whole genome shotgun sequence	3966..4403	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTYZ010000003.1	360434..361303	99.31	870	0						
GCA_032657565.1_PDT001926847.1_genomic.fna	Salmonella_enterica	0.5206	400.557 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNTZB010000001.1 Salmonella enterica strain PNUSAS390509 SAMN37805341-rid19702623.denovo.01, whole genome shotgun sequence	475473..475910	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNTZB010000034.1 Salmonella enterica strain PNUSAS390509 SAMN37805341-rid19702623.guided.24, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTZB010000010.1	151838..152706	99.195	870	0						
GCA_032657585.1_PDT001926848.1_genomic.fna	Salmonella_enterica	0.5216	326.697 KB	6	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTZA010000001.1 Salmonella enterica strain PNUSAS390503 SAMN37805335-rid19698773.denovo.01, whole genome shotgun sequence	176915..177352	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNTZA010000046.1 Salmonella enterica strain PNUSAS390503 SAMN37805335-rid19698773.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTZA010000002.1	178776..179644	99.655	870	0						
GCA_032657645.1_PDT001926846.1_genomic.fna	Salmonella_enterica	0.5213	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTZC010000001.1 Salmonella enterica strain PNUSAS390510 SAMN37805342-rid19701163.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNTZC010000035.1 Salmonella enterica strain PNUSAS390510 SAMN37805342-rid19701163.guided.26, whole genome shotgun sequence	1310..1747	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTZC010000019.1 Salmonella enterica strain PNUSAS390510 SAMN37805342-rid19701163.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNTZC010000020.1 Salmonella enterica strain PNUSAS390510 SAMN37805342-rid19701163.denovo.21, whole genome shotgun sequence	3427..3688																																																avrA	ABNTZC010000002.1	505633..506502	99.54	870	0						
GCA_032657705.1_PDT001926844.1_genomic.fna	Salmonella_enterica	0.5216	353.154 KB	5	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNTZD010000001.1 Salmonella enterica strain PNUSAS390507 SAMN37805339-rid19704073.denovo.01, whole genome shotgun sequence	456548..456985	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNTZD010000038.1 Salmonella enterica strain PNUSAS390507 SAMN37805339-rid19704073.guided.26, whole genome shotgun sequence	10936..11373	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTZD010000002.1	149644..150513	99.425	870	0						
GCA_032657725.1_PDT001926843.1_genomic.fna	Salmonella_enterica	0.5222	173.645 KB	11	aroC_346,dnaN_4,hemD_8,hisD_125,purE_84,sucA_19,thrA_101	1296	9:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_346	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_19	thrA	100	100	thrA_101	9	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Lome		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNTZF010000001.1 Salmonella enterica strain PNUSAS390504 SAMN37805336-rid19699883.denovo.01, whole genome shotgun sequence	149858..150295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNTZF010000055.1 Salmonella enterica strain PNUSAS390504 SAMN37805336-rid19699883.guided.29, whole genome shotgun sequence	20567..21004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNTZF010000009.1	93973..94842	98.966	870	0						
GCA_032657765.1_PDT001926840.1_genomic.fna	Salmonella_enterica	0.5202	187.533 KB	8	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	2	gyrA_p.D87G,parC_p.T57S	1	IncL	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTZE010000001.1 Salmonella enterica strain PNUSAS390523 SAMN37805316-rid19702613.denovo.01, whole genome shotgun sequence	135637..136074	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTZE010000063.1 Salmonella enterica strain PNUSAS390523 SAMN37805316-rid19702613.guided.39, whole genome shotgun sequence	4306..4743	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNTZE010000003.1 Salmonella enterica strain PNUSAS390523 SAMN37805316-rid19702613.denovo.03, whole genome shotgun sequence	27816..28238	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNTZE010000065.1 Salmonella enterica strain PNUSAS390523 SAMN37805316-rid19702613.guided.45, whole genome shotgun sequence	4623..5045	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncL	92.48	652 / 661	ABNTZE010000025.1 Salmonella enterica strain PNUSAS390523 SAMN37805316-rid19702613.denovo.25, whole genome shotgun sequence	38383..39034																																																						avrA	ABNTZE010000002.1	123137..124006	99.195	870	0						
GCA_032658645.1_PDT001926835.1_genomic.fna	Salmonella_enterica	0.5224	605.668 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTZI010000001.1 Salmonella enterica strain PNUSAS390521 SAMN37805314-rid19702593.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNTZI010000025.1 Salmonella enterica strain PNUSAS390521 SAMN37805314-rid19702593.guided.18, whole genome shotgun sequence	318..755	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNTZI010000019.1 Salmonella enterica strain PNUSAS390521 SAMN37805314-rid19702593.denovo.22, whole genome shotgun sequence	188..318																																																						avrA	ABNTZI010000002.1	516282..517152	99.656	871	0						
GCA_032658665.1_PDT001926837.1_genomic.fna	Salmonella_enterica	0.5212	271.522 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul2,tet(B),tet(B)	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTZH010000002.1 Salmonella enterica strain PNUSAS390512 SAMN37805305-rid19702603.denovo.02, whole genome shotgun sequence	194735..195172	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTZH010000041.1 Salmonella enterica strain PNUSAS390512 SAMN37805305-rid19702603.denovo.46, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTZH010000041.1 Salmonella enterica strain PNUSAS390512 SAMN37805305-rid19702603.denovo.46, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNTZH010000068.1 Salmonella enterica strain PNUSAS390512 SAMN37805305-rid19702603.guided.36, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTZH010000070.1 Salmonella enterica strain PNUSAS390512 SAMN37805305-rid19702603.guided.45, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTZH010000070.1 Salmonella enterica strain PNUSAS390512 SAMN37805305-rid19702603.guided.45, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNTZH010000050.1 Salmonella enterica strain PNUSAS390512 SAMN37805305-rid19702603.denovo.57, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNTZH010000072.1 Salmonella enterica strain PNUSAS390512 SAMN37805305-rid19702603.guided.56, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNTZH010000048.1 Salmonella enterica strain PNUSAS390512 SAMN37805305-rid19702603.denovo.54, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNTZH010000071.1 Salmonella enterica strain PNUSAS390512 SAMN37805305-rid19702603.guided.51, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABNTZH010000041.1 Salmonella enterica strain PNUSAS390512 SAMN37805305-rid19702603.denovo.46, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNTZH010000070.1 Salmonella enterica strain PNUSAS390512 SAMN37805305-rid19702603.guided.45, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNTZH010000039.1 Salmonella enterica strain PNUSAS390512 SAMN37805305-rid19702603.denovo.43, whole genome shotgun sequence	423..1628	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNTZH010000069.1 Salmonella enterica strain PNUSAS390512 SAMN37805305-rid19702603.guided.42, whole genome shotgun sequence	4116..5321	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	100	131 / 131	ABNTZH010000048.1 Salmonella enterica strain PNUSAS390512 SAMN37805305-rid19702603.denovo.54, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNTZH010000071.1 Salmonella enterica strain PNUSAS390512 SAMN37805305-rid19702603.guided.51, whole genome shotgun sequence	2145..2275																																																avrA	ABNTZH010000001.1	501510..502379	99.885	870	0						
GCA_032658685.1_PDT001926834.1_genomic.fna	Salmonella_enterica	0.5209	489.739 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,qnrS1,qnrS1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNTZK010000001.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNTZK010000012.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.denovo.12, whole genome shotgun sequence	84650..85441	Spectinomycin, Streptomycin	JX185132	aadA1	100	792/792	ABNTZK010000031.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.guided.18, whole genome shotgun sequence	23213..24004	Spectinomycin, Streptomycin	JX185132	aac(6')-Iaa	96.35	438/438	ABNTZK010000034.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.guided.23, whole genome shotgun sequence	4086..4523	Amikacin, Tobramycin	NC_003197	qnrS1	100	657/657	ABNTZK010000012.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.denovo.12, whole genome shotgun sequence	88918..89574	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNTZK010000031.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.guided.18, whole genome shotgun sequence	27481..28137	Ciprofloxacin	AB187515	sul1	100	840/840	ABNTZK010000012.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.denovo.12, whole genome shotgun sequence	85946..86785	Sulfamethoxazole	U12338	sul1	100	840/840	ABNTZK010000031.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.guided.18, whole genome shotgun sequence	24509..25348	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNTZK010000012.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.denovo.12, whole genome shotgun sequence	94229..95428	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNTZK010000035.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.guided.24, whole genome shotgun sequence	3463..4662	Doxycycline, Tetracycline	AJ517790	dfrA1	99.79	474/474	ABNTZK010000012.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.denovo.12, whole genome shotgun sequence	84084..84557	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNTZK010000012.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.denovo.12, whole genome shotgun sequence	84084..84557	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNTZK010000012.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.denovo.12, whole genome shotgun sequence	84084..84557	Trimethoprim	X00926	dfrA1	99.79	474/474	ABNTZK010000031.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.guided.18, whole genome shotgun sequence	22647..23120	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNTZK010000031.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.guided.18, whole genome shotgun sequence	22647..23120	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNTZK010000031.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.guided.18, whole genome shotgun sequence	22647..23120	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNTZK010000019.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNTZK010000020.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.denovo.25, whole genome shotgun sequence	3402..3663		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNTZK010000012.1 Salmonella enterica strain PNUSAS390518 SAMN37805311-rid19704063.denovo.12, whole genome shotgun sequence	101553..101694																																									avrA	ABNTZK010000002.1	505310..506179	99.54	870	0						
GCA_032658705.1_PDT001926836.1_genomic.fna	Salmonella_enterica	0.5205	389.164 KB	6	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTZJ010000001.1 Salmonella enterica strain PNUSAS390519 SAMN37805312-rid19701143.denovo.01, whole genome shotgun sequence	453548..453985	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNTZJ010000093.1 Salmonella enterica strain PNUSAS390519 SAMN37805312-rid19701143.guided.28, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNTZJ010000026.1 Salmonella enterica strain PNUSAS390519 SAMN37805312-rid19701143.denovo.29, whole genome shotgun sequence	5946..6588	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNTZJ010000025.1 Salmonella enterica strain PNUSAS390519 SAMN37805312-rid19701143.denovo.27, whole genome shotgun sequence	18874..19456																																																avrA	ABNTZJ010000003.1	140051..140920	99.77	870	0						
GCA_032658725.1_PDT001926841.1_genomic.fna	Salmonella_enterica	0.5213	401.857 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNTZG010000001.1 Salmonella enterica strain PNUSAS390524 SAMN37805317-rid19701153.denovo.01, whole genome shotgun sequence	645052..645489	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNTZG010000067.1 Salmonella enterica strain PNUSAS390524 SAMN37805317-rid19701153.guided.26, whole genome shotgun sequence	2914..3351	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNTZG010000020.1 Salmonella enterica strain PNUSAS390524 SAMN37805317-rid19701153.denovo.22, whole genome shotgun sequence	5955..6597																																																						avrA	ABNTZG010000003.1	140050..140919	99.655	870	0						
GCA_032658865.1_PDT001926833.1_genomic.fna	Salmonella_enterica	0.5192	278.029 KB	6	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	2	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-27,blaCTX-M-27	1	parC_p.T57S	3	Col(pHAD28),IncFIB(AP001918),IncFII	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNTZL010000001.1 Salmonella enterica strain PNUSAS390515 SAMN37805308-rid19698753.denovo.01, whole genome shotgun sequence	462105..462542	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNTZL010000045.1 Salmonella enterica strain PNUSAS390515 SAMN37805308-rid19698753.guided.28, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	blaCTX-M-27	100	876/876	ABNTZL010000030.1 Salmonella enterica strain PNUSAS390515 SAMN37805308-rid19698753.denovo.34, whole genome shotgun sequence	429..1304	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY156923	blaCTX-M-27	100	876/876	ABNTZL010000046.1 Salmonella enterica strain PNUSAS390515 SAMN37805308-rid19698753.guided.33, whole genome shotgun sequence	470..1345	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY156923																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNTZL010000031.1 Salmonella enterica strain PNUSAS390515 SAMN37805308-rid19698753.denovo.35, whole genome shotgun sequence	188..318	enterobacteriales	IncFIB(AP001918)	96.63	682 / 682	ABNTZL010000023.1 Salmonella enterica strain PNUSAS390515 SAMN37805308-rid19698753.denovo.25, whole genome shotgun sequence	8394..9075		enterobacteriales	IncFII	96.18	262 / 261	ABNTZL010000019.1 Salmonella enterica strain PNUSAS390515 SAMN37805308-rid19698753.denovo.21, whole genome shotgun sequence	46590..46851																																									avrA	ABNTZL010000003.1	145117..145986	98.966	870	0						
GCA_032658905.1_PDT001926832.1_genomic.fna	Salmonella_enterica	0.5224	257.84 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNTZM010000002.1 Salmonella enterica strain PNUSAS390517 SAMN37805310-rid19702583.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNTZM010000056.1 Salmonella enterica strain PNUSAS390517 SAMN37805310-rid19702583.guided.38, whole genome shotgun sequence	4603..5040	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNTZM010000022.1 Salmonella enterica strain PNUSAS390517 SAMN37805310-rid19702583.denovo.22, whole genome shotgun sequence	44724..45366	enterobacteriales	IncFII(S)	100	262 / 262	ABNTZM010000022.1 Salmonella enterica strain PNUSAS390517 SAMN37805310-rid19702583.denovo.22, whole genome shotgun sequence	29378..29639																																																avrA	ABNTZM010000001.1	401427..402295	100	869	0						
GCA_032658945.1_PDT001926828.1_genomic.fna	Salmonella_enterica	0.5212	238.812 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNTZP010000001.1 Salmonella enterica strain PNUSAS390514 SAMN37805307-rid19698743.denovo.01, whole genome shotgun sequence	482601..483038	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTZP010000036.1 Salmonella enterica strain PNUSAS390514 SAMN37805307-rid19698743.denovo.41, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTZP010000036.1 Salmonella enterica strain PNUSAS390514 SAMN37805307-rid19698743.denovo.41, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNTZP010000053.1 Salmonella enterica strain PNUSAS390514 SAMN37805307-rid19698743.guided.31, whole genome shotgun sequence	19608..20045	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNTZP010000056.1 Salmonella enterica strain PNUSAS390514 SAMN37805307-rid19698743.guided.39, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNTZP010000056.1 Salmonella enterica strain PNUSAS390514 SAMN37805307-rid19698743.guided.39, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNTZP010000041.1 Salmonella enterica strain PNUSAS390514 SAMN37805307-rid19698743.denovo.47, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNTZP010000057.1 Salmonella enterica strain PNUSAS390514 SAMN37805307-rid19698743.guided.46, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNTZP010000036.1 Salmonella enterica strain PNUSAS390514 SAMN37805307-rid19698743.denovo.41, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNTZP010000056.1 Salmonella enterica strain PNUSAS390514 SAMN37805307-rid19698743.guided.39, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNTZP010000031.1 Salmonella enterica strain PNUSAS390514 SAMN37805307-rid19698743.denovo.34, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNTZP010000054.1 Salmonella enterica strain PNUSAS390514 SAMN37805307-rid19698743.guided.33, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNTZP010000002.1	540741..541610	99.885	870	0						
GCA_032659565.1_PDT001926810.1_genomic.fna	Salmonella_enterica	0.5218	581.381 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUAD010000001.1 Salmonella enterica strain PNUSAS390402 SAMN37804928-rid19702523.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUAD010000016.1 Salmonella enterica strain PNUSAS390402 SAMN37804928-rid19702523.guided.13, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNUAD010000007.1	93862..94731	99.655	870	0						
GCA_032661785.1_PDT001792330.1_genomic.fna	Salmonella_enterica	0.522	222.467 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUAQ010000007.1 Salmonella enterica strain PNUSAS359338 SAMN36026016-rid18572463.denovo.07, whole genome shotgun sequence	145880..146317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUAQ010000065.1 Salmonella enterica strain PNUSAS359338 SAMN36026016-rid18572463.guided.39, whole genome shotgun sequence	19..456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUAQ010000026.1 Salmonella enterica strain PNUSAS359338 SAMN36026016-rid18572463.denovo.26, whole genome shotgun sequence	44766..45408	enterobacteriales	IncFII(S)	100	262 / 262	ABNUAQ010000026.1 Salmonella enterica strain PNUSAS359338 SAMN36026016-rid18572463.denovo.26, whole genome shotgun sequence	29419..29680																																																avrA	ABNUAQ010000009.1	174540..175409	99.885	870	0						
GCA_032661905.1_PDT001792329.1_genomic.fna	Salmonella_enterica	0.521	156.292 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUAS010000001.1 Salmonella enterica strain PNUSAS359381 SAMN36026426-rid18572453.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUAS010000097.1 Salmonella enterica strain PNUSAS359381 SAMN36026426-rid18572453.guided.31, whole genome shotgun sequence	9306..9743	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	99.83	577 / 643	ABNUAS010000078.1 Salmonella enterica strain PNUSAS359381 SAMN36026426-rid18572453.denovo.81, whole genome shotgun sequence	1..577	enterobacteriales	IncFII(S)	100	262 / 262	ABNUAS010000084.1 Salmonella enterica strain PNUSAS359381 SAMN36026426-rid18572453.denovo.87, whole genome shotgun sequence	432..693		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNUAS010000085.1 Salmonella enterica strain PNUSAS359381 SAMN36026426-rid18572453.denovo.88, whole genome shotgun sequence	847..988																																									avrA	ABNUAS010000002.1	401549..402417	100	869	0						
GCA_032661985.1_PDT001792324.1_genomic.fna	Salmonella_enterica	0.5217	238.812 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUAU010000001.1 Salmonella enterica strain PNUSAS359346 SAMN36026022-rid18572403.denovo.01, whole genome shotgun sequence	458966..459403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUAU010000050.1 Salmonella enterica strain PNUSAS359346 SAMN36026022-rid18572403.guided.34, whole genome shotgun sequence	7470..7907	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNUAU010000002.1	509209..510078	99.885	870	0						
GCA_032662095.1_PDT001792323.1_genomic.fna	Salmonella_enterica	0.5206	229.942 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_156	1215	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_156	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUAV010000001.1 Salmonella enterica strain PNUSAS359355 isolate TXACF2301074 SAMN36025968-rid18572393.denovo.01, whole genome shotgun sequence	486112..486549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUAV010000045.1 Salmonella enterica strain PNUSAS359355 isolate TXACF2301074 SAMN36025968-rid18572393.guided.22, whole genome shotgun sequence	39265..39702	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNUAV010000020.1 Salmonella enterica strain PNUSAS359355 isolate TXACF2301074 SAMN36025968-rid18572393.denovo.20, whole genome shotgun sequence	27816..28238	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNUAV010000048.1 Salmonella enterica strain PNUSAS359355 isolate TXACF2301074 SAMN36025968-rid18572393.guided.35, whole genome shotgun sequence	4807..5229	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUAV010000002.1	164185..165054	99.195	870	0						
GCA_032662165.1_PDT001792320.1_genomic.fna	Salmonella_enterica	0.5206	389.813 KB	5	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUAZ010000001.1 Salmonella enterica strain PNUSAS359335 SAMN36026019-rid18572363.denovo.01, whole genome shotgun sequence	110417..110854	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUAZ010000040.1 Salmonella enterica strain PNUSAS359335 SAMN36026019-rid18572363.guided.25, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNUAZ010000027.1 Salmonella enterica strain PNUSAS359335 SAMN36026019-rid18572363.denovo.30, whole genome shotgun sequence	1480..1610																																																						avrA	ABNUAZ010000002.1	143391..144260	98.966	870	0						
GCA_032662245.1_PDT001792319.1_genomic.fna	Salmonella_enterica	0.5212	225.555 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUBB010000001.1 Salmonella enterica strain PNUSAS359385 SAMN36026433-rid18572353.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUBB010000069.1 Salmonella enterica strain PNUSAS359385 SAMN36026433-rid18572353.guided.30, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUBB010000036.1 Salmonella enterica strain PNUSAS359385 SAMN36026433-rid18572353.denovo.39, whole genome shotgun sequence	5430..6072	enterobacteriales	IncFII(S)	100	262 / 262	ABNUBB010000043.1 Salmonella enterica strain PNUSAS359385 SAMN36026433-rid18572353.denovo.46, whole genome shotgun sequence	3561..3822																																																avrA	ABNUBB010000003.1	174500..175368	100	869	0						
GCA_032662285.1_PDT001792318.1_genomic.fna	Salmonella_enterica	0.5209	478.496 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUBA010000001.1 Salmonella enterica strain PNUSAS359387 SAMN36026436-rid18572343.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUBA010000026.1 Salmonella enterica strain PNUSAS359387 SAMN36026436-rid18572343.guided.13, whole genome shotgun sequence	10647..11084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUBA010000017.1 Salmonella enterica strain PNUSAS359387 SAMN36026436-rid18572343.denovo.20, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNUBA010000019.1 Salmonella enterica strain PNUSAS359387 SAMN36026436-rid18572343.denovo.22, whole genome shotgun sequence	3397..3658																																																avrA	ABNUBA010000002.1	553077..553946	99.54	870	0						
GCA_032662485.1_ASM3266248v1_genomic.fna	Salmonella_enterica	0.5223	354.37 KB	5	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	15	aac(6')-Iaa,aadA7,aac(3)-IId,aadA17,aph(3')-Ia,blaCTX-M-55,blaTEM-1B,mph(A),lnu(F),floR,qnrS1,ARR-2,sul1,tet(A),dfrA14	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	JAVCBR010000005.1 Salmonella enterica strain SZ22HS1 SZ22HS1_005, whole genome shotgun sequence	275321..275758	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	JAVCBR010000023.1 Salmonella enterica strain SZ22HS1 SZ22HS1_023, whole genome shotgun sequence	527..1324	Spectinomycin, Streptomycin	AF224733	aac(3)-IId	99.88	861/861	JAVCBR010000041.1 Salmonella enterica strain SZ22HS1 SZ22HS1_041, whole genome shotgun sequence	546..1406	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA17	98.86	792/792	JAVCBR010000043.1 Salmonella enterica strain SZ22HS1 SZ22HS1_043, whole genome shotgun sequence	1119..1910	Spectinomycin, Streptomycin	FJ460181	aph(3')-Ia	99.88	816/816	JAVCBR010000046.1 Salmonella enterica strain SZ22HS1 SZ22HS1_046, whole genome shotgun sequence	199..1014	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	EF015636	blaCTX-M-55	100	876/876	JAVCBR010000032.1 Salmonella enterica strain SZ22HS1 SZ22HS1_032, whole genome shotgun sequence	2688..3563	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	JAVCBR010000032.1 Salmonella enterica strain SZ22HS1 SZ22HS1_032, whole genome shotgun sequence	1046..1906	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	JAVCBR010000035.1 Salmonella enterica strain SZ22HS1 SZ22HS1_035, whole genome shotgun sequence	146..1051	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	JAVCBR010000043.1 Salmonella enterica strain SZ22HS1 SZ22HS1_043, whole genome shotgun sequence	166..987	Lincomycin	EU118119	floR	98.11	1214/1215	JAVCBR010000027.1 Salmonella enterica strain SZ22HS1 SZ22HS1_027, whole genome shotgun sequence	4450..5663	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	JAVCBR010000026.1 Salmonella enterica strain SZ22HS1 SZ22HS1_026, whole genome shotgun sequence	2830..3486	Ciprofloxacin	AB187515	ARR-2	100	453/453	JAVCBR010000044.1 Salmonella enterica strain SZ22HS1 SZ22HS1_044, whole genome shotgun sequence	678..1130	Rifampicin	HQ141279	sul1	100	840/840	JAVCBR010000023.1 Salmonella enterica strain SZ22HS1 SZ22HS1_023, whole genome shotgun sequence	1829..2668	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	JAVCBR010000023.1 Salmonella enterica strain SZ22HS1 SZ22HS1_023, whole genome shotgun sequence	9727..10926	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	JAVCBR010000044.1 Salmonella enterica strain SZ22HS1 SZ22HS1_044, whole genome shotgun sequence	94..567	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																															gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	JAVCBR010000002.1	512733..513602	99.31	870	0						
GCA_032662565.1_ASM3266256v1_genomic.fna	Salmonella_enterica	0.5223	354.272 KB	5	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	15	aac(6')-Iaa,aadA7,aac(3)-IId,aadA17,aph(3')-Ia,blaCTX-M-55,blaTEM-1B,mph(A),lnu(F),floR,qnrS1,ARR-2,sul1,tet(A),dfrA14	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	JAVCBS010000005.1 Salmonella enterica strain SZ22HS2 SZ22HS2_005, whole genome shotgun sequence	275223..275660	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	JAVCBS010000021.1 Salmonella enterica strain SZ22HS2 SZ22HS2_021, whole genome shotgun sequence	527..1324	Spectinomycin, Streptomycin	AF224733	aac(3)-IId	99.88	861/861	JAVCBS010000039.1 Salmonella enterica strain SZ22HS2 SZ22HS2_039, whole genome shotgun sequence	546..1406	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA17	98.86	792/792	JAVCBS010000041.1 Salmonella enterica strain SZ22HS2 SZ22HS2_041, whole genome shotgun sequence	203..994	Spectinomycin, Streptomycin	FJ460181	aph(3')-Ia	99.88	816/816	JAVCBS010000045.1 Salmonella enterica strain SZ22HS2 SZ22HS2_045, whole genome shotgun sequence	199..1014	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EF015636	blaCTX-M-55	100	876/876	JAVCBS010000030.1 Salmonella enterica strain SZ22HS2 SZ22HS2_030, whole genome shotgun sequence	2688..3563	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	JAVCBS010000030.1 Salmonella enterica strain SZ22HS2 SZ22HS2_030, whole genome shotgun sequence	1046..1906	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	JAVCBS010000033.1 Salmonella enterica strain SZ22HS2 SZ22HS2_033, whole genome shotgun sequence	2335..3240	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	JAVCBS010000041.1 Salmonella enterica strain SZ22HS2 SZ22HS2_041, whole genome shotgun sequence	1126..1947	Lincomycin	EU118119	floR	98.11	1214/1215	JAVCBS010000025.1 Salmonella enterica strain SZ22HS2 SZ22HS2_025, whole genome shotgun sequence	4450..5663	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	JAVCBS010000024.1 Salmonella enterica strain SZ22HS2 SZ22HS2_024, whole genome shotgun sequence	2832..3488	Ciprofloxacin	AB187515	ARR-2	100	453/453	JAVCBS010000042.1 Salmonella enterica strain SZ22HS2 SZ22HS2_042, whole genome shotgun sequence	678..1130	Rifampicin	HQ141279	sul1	100	840/840	JAVCBS010000021.1 Salmonella enterica strain SZ22HS2 SZ22HS2_021, whole genome shotgun sequence	1829..2668	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	JAVCBS010000021.1 Salmonella enterica strain SZ22HS2 SZ22HS2_021, whole genome shotgun sequence	9727..10926	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	JAVCBS010000042.1 Salmonella enterica strain SZ22HS2 SZ22HS2_042, whole genome shotgun sequence	94..567	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																															gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	JAVCBS010000001.1	576764..577633	99.31	870	0						
GCA_032662605.1_ASM3266260v1_genomic.fna	Salmonella_enterica	0.5223	354.37 KB	5	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	15	aac(6')-Iaa,aadA7,aac(3)-IId,aadA17,aph(3')-Ia,blaCTX-M-55,blaTEM-1B,mph(A),lnu(F),floR,qnrS1,ARR-2,sul1,tet(A),dfrA14	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	JAVCBT010000005.1 Salmonella enterica strain SZ22HS3 SZ22HS3_005, whole genome shotgun sequence	78613..79050	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	JAVCBT010000021.1 Salmonella enterica strain SZ22HS3 SZ22HS3_021, whole genome shotgun sequence	527..1324	Spectinomycin, Streptomycin	AF224733	aac(3)-IId	99.88	861/861	JAVCBT010000039.1 Salmonella enterica strain SZ22HS3 SZ22HS3_039, whole genome shotgun sequence	546..1406	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA17	98.86	792/792	JAVCBT010000041.1 Salmonella enterica strain SZ22HS3 SZ22HS3_041, whole genome shotgun sequence	1119..1910	Spectinomycin, Streptomycin	FJ460181	aph(3')-Ia	99.88	816/816	JAVCBT010000045.1 Salmonella enterica strain SZ22HS3 SZ22HS3_045, whole genome shotgun sequence	317..1132	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EF015636	blaCTX-M-55	100	876/876	JAVCBT010000030.1 Salmonella enterica strain SZ22HS3 SZ22HS3_030, whole genome shotgun sequence	2688..3563	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	JAVCBT010000030.1 Salmonella enterica strain SZ22HS3 SZ22HS3_030, whole genome shotgun sequence	1046..1906	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	JAVCBT010000033.1 Salmonella enterica strain SZ22HS3 SZ22HS3_033, whole genome shotgun sequence	146..1051	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	JAVCBT010000041.1 Salmonella enterica strain SZ22HS3 SZ22HS3_041, whole genome shotgun sequence	166..987	Lincomycin	EU118119	floR	98.11	1214/1215	JAVCBT010000025.1 Salmonella enterica strain SZ22HS3 SZ22HS3_025, whole genome shotgun sequence	706..1919	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	JAVCBT010000024.1 Salmonella enterica strain SZ22HS3 SZ22HS3_024, whole genome shotgun sequence	3677..4333	Ciprofloxacin	AB187515	ARR-2	100	453/453	JAVCBT010000042.1 Salmonella enterica strain SZ22HS3 SZ22HS3_042, whole genome shotgun sequence	690..1142	Rifampicin	HQ141279	sul1	100	840/840	JAVCBT010000021.1 Salmonella enterica strain SZ22HS3 SZ22HS3_021, whole genome shotgun sequence	1829..2668	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	JAVCBT010000021.1 Salmonella enterica strain SZ22HS3 SZ22HS3_021, whole genome shotgun sequence	9727..10926	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	JAVCBT010000042.1 Salmonella enterica strain SZ22HS3 SZ22HS3_042, whole genome shotgun sequence	1253..1726	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																															gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	JAVCBT010000001.1	576763..577632	99.31	870	0						
GCA_032663685.1_PDT001792298.1_genomic.fna	Salmonella_enterica	0.5202	532.201 KB	4	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUBU010000002.1 Salmonella enterica strain PNUSAS359412 SAMN36026878-rid18572143.denovo.02, whole genome shotgun sequence	586861..587298	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUBU010000024.1 Salmonella enterica strain PNUSAS359412 SAMN36026878-rid18572143.guided.18, whole genome shotgun sequence	3624..4061	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUBU010000001.1	559341..560210	99.425	870	0						
GCA_032663745.1_PDT001792295.1_genomic.fna	Salmonella_enterica	0.5221	334.522 KB	6	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUBX010000012.1 Salmonella enterica strain PNUSAS359200 SAMN36027519-rid18572113.denovo.12, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNUBX010000039.1 Salmonella enterica strain PNUSAS359200 SAMN36027519-rid18572113.guided.27, whole genome shotgun sequence	21706..22143	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.91	132 / 131	ABNUBX010000030.1 Salmonella enterica strain PNUSAS359200 SAMN36027519-rid18572113.denovo.33, whole genome shotgun sequence	5384..5514	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNUBX010000033.1 Salmonella enterica strain PNUSAS359200 SAMN36027519-rid18572113.denovo.36, whole genome shotgun sequence	557..687																																																											
GCA_032663765.1_PDT001792296.1_genomic.fna	Salmonella_enterica	0.5221	347.439 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA12,aph(3')-Ia,aadA12,aac(6')-Iaa,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul1,sul1,sul1,tet(A),tet(A)	0		2	IncFIB(AP001918),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUBW010000001.1 Salmonella enterica strain PNUSAS359209 SAMN36027510-rid18572123.denovo.01, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aadA12	100	792/792	ABNUBW010000028.1 Salmonella enterica strain PNUSAS359209 SAMN36027510-rid18572123.denovo.30, whole genome shotgun sequence	8019..8810	Spectinomycin, Streptomycin	AY665771	aph(3')-Ia	100	816/816	ABNUBW010000042.1 Salmonella enterica strain PNUSAS359209 SAMN36027510-rid18572123.denovo.51, whole genome shotgun sequence	397..1212	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	EU722351	aadA12	100	792/792	ABNUBW010000060.1 Salmonella enterica strain PNUSAS359209 SAMN36027510-rid18572123.guided.37, whole genome shotgun sequence	5406..6197	Spectinomycin, Streptomycin	AY665771	aac(6')-Iaa	100	438/438	ABNUBW010000062.1 Salmonella enterica strain PNUSAS359209 SAMN36027510-rid18572123.guided.42, whole genome shotgun sequence	772..1209	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNUBW010000064.1 Salmonella enterica strain PNUSAS359209 SAMN36027510-rid18572123.guided.48, whole genome shotgun sequence	289..1104	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	EU722351	blaTEM-1B	100	861/861	ABNUBW010000032.1 Salmonella enterica strain PNUSAS359209 SAMN36027510-rid18572123.denovo.34, whole genome shotgun sequence	3706..4566	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNUBW010000061.1 Salmonella enterica strain PNUSAS359209 SAMN36027510-rid18572123.guided.40, whole genome shotgun sequence	1124..1984	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	ABNUBW010000028.1 Salmonella enterica strain PNUSAS359209 SAMN36027510-rid18572123.denovo.30, whole genome shotgun sequence	6675..7514	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUBW010000058.1 Salmonella enterica strain PNUSAS359209 SAMN36027510-rid18572123.guided.35, whole genome shotgun sequence	2..841	Sulfamethoxazole	U12338	sul1	99.88	840/840	ABNUBW010000059.1 Salmonella enterica strain PNUSAS359209 SAMN36027510-rid18572123.guided.36, whole genome shotgun sequence	2..841	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNUBW010000035.1 Salmonella enterica strain PNUSAS359209 SAMN36027510-rid18572123.denovo.41, whole genome shotgun sequence	1995..3194	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUBW010000063.1 Salmonella enterica strain PNUSAS359209 SAMN36027510-rid18572123.guided.43, whole genome shotgun sequence	2036..3235	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																	enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNUBW010000033.1 Salmonella enterica strain PNUSAS359209 SAMN36027510-rid18572123.denovo.38, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII(S)	100	262 / 262	ABNUBW010000018.1 Salmonella enterica strain PNUSAS359209 SAMN36027510-rid18572123.denovo.18, whole genome shotgun sequence	70982..71243																																																avrA	ABNUBW010000005.1	173873..174742	99.885	870	0						
GCA_032663845.1_PDT001792292.1_genomic.fna	Salmonella_enterica	0.5232	244.374 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(3)-VIa,aadA1,aac(6')-Iaa,sul1,sul1,sul1	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUCA010000001.1 Salmonella enterica strain PNUSAS359208 SAMN36027502-rid18572083.denovo.01, whole genome shotgun sequence	473976..474413	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNUCA010000015.1 Salmonella enterica strain PNUSAS359208 SAMN36027502-rid18572083.denovo.15, whole genome shotgun sequence	72427..73329	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNUCA010000015.1 Salmonella enterica strain PNUSAS359208 SAMN36027502-rid18572083.denovo.15, whole genome shotgun sequence	71472..72263	Spectinomycin, Streptomycin	JQ414041	aac(3)-VIa	100	903/903	ABNUCA010000045.1 Salmonella enterica strain PNUSAS359208 SAMN36027502-rid18572083.guided.34, whole genome shotgun sequence	37..939	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNUCA010000046.1 Salmonella enterica strain PNUSAS359208 SAMN36027502-rid18572083.guided.36, whole genome shotgun sequence	4127..4918	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNUCA010000047.1 Salmonella enterica strain PNUSAS359208 SAMN36027502-rid18572083.guided.38, whole genome shotgun sequence	3021..3458	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNUCA010000015.1 Salmonella enterica strain PNUSAS359208 SAMN36027502-rid18572083.denovo.15, whole genome shotgun sequence	79329..80168	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUCA010000048.1 Salmonella enterica strain PNUSAS359208 SAMN36027502-rid18572083.guided.39, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338	sul1	99.88	840/840	ABNUCA010000049.1 Salmonella enterica strain PNUSAS359208 SAMN36027502-rid18572083.guided.40, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																																									parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNUCA010000015.1 Salmonella enterica strain PNUSAS359208 SAMN36027502-rid18572083.denovo.15, whole genome shotgun sequence	94380..94521																																																						avrA	ABNUCA010000005.1	94091..94960	99.655	870	0						
GCA_032664005.1_PDT001792290.1_genomic.fna	Salmonella_enterica	0.5225	396.03 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNUCD010000004.1 Salmonella enterica strain PNUSAS359196 SAMN36027513-rid18572063.denovo.04, whole genome shotgun sequence	354201..354638	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNUCD010000028.1 Salmonella enterica strain PNUSAS359196 SAMN36027513-rid18572063.guided.22, whole genome shotgun sequence	10503..10940	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUCD010000001.1	64917..65786	98.966	870	0						
GCA_032664125.1_PDT001792285.1_genomic.fna	Salmonella_enterica	0.5212	278.343 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUCI010000001.1 Salmonella enterica strain PNUSAS359201 SAMN36027507-rid18572013.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUCI010000036.1 Salmonella enterica strain PNUSAS359201 SAMN36027507-rid18572013.denovo.40, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUCI010000036.1 Salmonella enterica strain PNUSAS359201 SAMN36027507-rid18572013.denovo.40, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNUCI010000059.1 Salmonella enterica strain PNUSAS359201 SAMN36027507-rid18572013.guided.24, whole genome shotgun sequence	9619..10056	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUCI010000062.1 Salmonella enterica strain PNUSAS359201 SAMN36027507-rid18572013.guided.39, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUCI010000062.1 Salmonella enterica strain PNUSAS359201 SAMN36027507-rid18572013.guided.39, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNUCI010000042.1 Salmonella enterica strain PNUSAS359201 SAMN36027507-rid18572013.denovo.48, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNUCI010000064.1 Salmonella enterica strain PNUSAS359201 SAMN36027507-rid18572013.guided.47, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNUCI010000036.1 Salmonella enterica strain PNUSAS359201 SAMN36027507-rid18572013.denovo.40, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNUCI010000062.1 Salmonella enterica strain PNUSAS359201 SAMN36027507-rid18572013.guided.39, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNUCI010000030.1 Salmonella enterica strain PNUSAS359201 SAMN36027507-rid18572013.denovo.33, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNUCI010000061.1 Salmonella enterica strain PNUSAS359201 SAMN36027507-rid18572013.guided.32, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNUCI010000002.1	540747..541616	99.885	870	0						
GCA_032664175.1_PDT001792288.1_genomic.fna	Salmonella_enterica	0.5216	243.674 KB	6	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUCF010000001.1 Salmonella enterica strain PNUSAS359214 SAMN36027504-rid18572043.denovo.01, whole genome shotgun sequence	482597..483034	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUCF010000052.1 Salmonella enterica strain PNUSAS359214 SAMN36027504-rid18572043.guided.45, whole genome shotgun sequence	313..750	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUCF010000027.1 Salmonella enterica strain PNUSAS359214 SAMN36027504-rid18572043.denovo.27, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNUCF010000027.1 Salmonella enterica strain PNUSAS359214 SAMN36027504-rid18572043.denovo.27, whole genome shotgun sequence	9325..9586																																																avrA	ABNUCF010000006.1	174642..175511	99.885	870	0						
GCA_032664265.1_PDT001792282.1_genomic.fna	Salmonella_enterica	0.5208	309.815 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUCL010000001.1 Salmonella enterica strain PNUSAS359215 SAMN36027516-rid18571983.denovo.01, whole genome shotgun sequence	462175..462612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUCL010000042.1 Salmonella enterica strain PNUSAS359215 SAMN36027516-rid18571983.guided.26, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUCL010000002.1	551339..552208	99.195	870	0						
GCA_032664525.1_PDT001792273.1_genomic.fna	Salmonella_enterica	0.5202	177.469 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	10	aac(6')-Iaa,aadA24,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA24,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul2,sul2,sul2,tet(M),tet(B),tet(M),tet(B),dfrA12,dfrA12	0		4	Col(pHAD28),IncFIB(AP001918),IncFIC(FII),IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUCU010000001.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.denovo.01, whole genome shotgun sequence	145585..146022	Amikacin, Tobramycin	NC_003197	aadA24	99.36	780/780	ABNUCU010000043.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.denovo.45, whole genome shotgun sequence	4690..5469	Spectinomycin, Streptomycin	DQ677333	aph(6)-Id	100	837/837	ABNUCU010000064.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.denovo.72, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUCU010000064.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.denovo.72, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNUCU010000075.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.guided.36, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA24	99.36	780/780	ABNUCU010000077.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.guided.47, whole genome shotgun sequence	4731..5510	Spectinomycin, Streptomycin	DQ677333	aph(6)-Id	100	837/837	ABNUCU010000082.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.guided.71, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUCU010000082.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.guided.71, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNUCU010000063.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.denovo.69, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNUCU010000081.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.guided.70, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNUCU010000059.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.denovo.64, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNUCU010000080.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.guided.68, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABNUCU010000083.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.guided.78, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNUCU010000084.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.guided.79, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNUCU010000085.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.guided.80, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNUCU010000086.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.guided.81, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(M)	96.15	1920/1920	ABNUCU010000043.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.denovo.45, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNUCU010000044.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.denovo.46, whole genome shotgun sequence	6921..8126	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNUCU010000077.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.guided.47, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNUCU010000079.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.guided.54, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABNUCU010000043.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.denovo.45, whole genome shotgun sequence	5889..6386	Trimethoprim	AM040708	dfrA12	100	498/498	ABNUCU010000077.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.guided.47, whole genome shotgun sequence	5930..6427	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	100	131 / 131	ABNUCU010000059.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.denovo.64, whole genome shotgun sequence	1150..1280	enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNUCU010000052.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.denovo.57, whole genome shotgun sequence	2056..2737		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNUCU010000034.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.denovo.34, whole genome shotgun sequence	35180..35676		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNUCU010000028.1 Salmonella enterica strain PNUSAS359178 SAMN36019653-rid18571893.denovo.28, whole genome shotgun sequence	15755..16288																																		avrA	ABNUCU010000002.1	434658..435527	99.885	870	0						
GCA_032665405.1_PDT001792263.1_genomic.fna	Salmonella_enterica	0.5225	274.006 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNUDA010000010.1 Salmonella enterica strain PNUSAS359211 SAMN36027503-rid18571793.denovo.10, whole genome shotgun sequence	70815..71252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNUDA010000035.1 Salmonella enterica strain PNUSAS359211 SAMN36027503-rid18571793.guided.28, whole genome shotgun sequence	1246..1683	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUDA010000001.1	64917..65786	98.966	870	0						
GCA_032665525.1_PDT001792262.1_genomic.fna	Salmonella_enterica	0.5212	406.073 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUDB010000001.1 Salmonella enterica strain PNUSAS359212 SAMN36027515-rid18571783.denovo.01, whole genome shotgun sequence	815076..815513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUDB010000030.1 Salmonella enterica strain PNUSAS359212 SAMN36027515-rid18571783.guided.20, whole genome shotgun sequence	15847..16284	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	Col440I	94.74	114 / 114	ABNUDB010000023.1 Salmonella enterica strain PNUSAS359212 SAMN36027515-rid18571783.denovo.26, whole genome shotgun sequence	1981..2094	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUDB010000019.1 Salmonella enterica strain PNUSAS359212 SAMN36027515-rid18571783.denovo.21, whole genome shotgun sequence	6815..7457		enterobacteriales	IncFII(S)	100	262 / 262	ABNUDB010000020.1 Salmonella enterica strain PNUSAS359212 SAMN36027515-rid18571783.denovo.22, whole genome shotgun sequence	3403..3664																																									avrA	ABNUDB010000002.1	553301..554170	99.54	870	0						
GCA_032665585.1_PDT001792261.1_genomic.fna	Salmonella_enterica	0.5209	236.501 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUDC010000001.1 Salmonella enterica strain PNUSAS359204 SAMN36027509-rid18571773.denovo.01, whole genome shotgun sequence	728217..728654	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUDC010000038.1 Salmonella enterica strain PNUSAS359204 SAMN36027509-rid18571773.guided.24, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUDC010000002.1	551339..552208	99.195	870	0						
GCA_032665605.1_PDT001792259.1_genomic.fna	Salmonella_enterica	0.522	257.839 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUDE010000001.1 Salmonella enterica strain PNUSAS359216 SAMN36027506-rid18571753.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUDE010000048.1 Salmonella enterica strain PNUSAS359216 SAMN36027506-rid18571753.guided.36, whole genome shotgun sequence	2199..2636	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUDE010000019.1 Salmonella enterica strain PNUSAS359216 SAMN36027506-rid18571753.denovo.19, whole genome shotgun sequence	48449..49091	enterobacteriales	IncFII(S)	100	262 / 262	ABNUDE010000019.1 Salmonella enterica strain PNUSAS359216 SAMN36027506-rid18571753.denovo.19, whole genome shotgun sequence	64176..64437																																																avrA	ABNUDE010000007.1	97957..98825	100	869	0						
GCA_032665645.1_PDT001792260.1_genomic.fna	Salmonella_enterica	0.5219	257.84 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUDD010000002.1 Salmonella enterica strain PNUSAS359199 SAMN36027512-rid18571763.denovo.02, whole genome shotgun sequence	145210..145647	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUDD010000056.1 Salmonella enterica strain PNUSAS359199 SAMN36027512-rid18571763.guided.37, whole genome shotgun sequence	5730..6167	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUDD010000025.1 Salmonella enterica strain PNUSAS359199 SAMN36027512-rid18571763.denovo.25, whole genome shotgun sequence	44722..45364	enterobacteriales	IncFII(S)	100	262 / 262	ABNUDD010000025.1 Salmonella enterica strain PNUSAS359199 SAMN36027512-rid18571763.denovo.25, whole genome shotgun sequence	29375..29636																																																avrA	ABNUDD010000001.1	450786..451655	99.885	870	0						
GCA_032665685.1_PDT001792258.1_genomic.fna	Salmonella_enterica	0.5218	225.564 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUDF010000001.1 Salmonella enterica strain PNUSAS359202 SAMN36027521-rid18571743.denovo.01, whole genome shotgun sequence	407243..407680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUDF010000050.1 Salmonella enterica strain PNUSAS359202 SAMN36027521-rid18571743.guided.39, whole genome shotgun sequence	3797..4234	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUDF010000030.1 Salmonella enterica strain PNUSAS359202 SAMN36027521-rid18571743.denovo.30, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNUDF010000030.1 Salmonella enterica strain PNUSAS359202 SAMN36027521-rid18571743.denovo.30, whole genome shotgun sequence	9325..9586																																																avrA	ABNUDF010000002.1	174816..175685	99.885	870	0						
GCA_032665705.1_PDT001792257.1_genomic.fna	Salmonella_enterica	0.5213	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUDG010000001.1 Salmonella enterica strain PNUSAS359203 SAMN36027501-rid18571733.denovo.01, whole genome shotgun sequence	815077..815514	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUDG010000031.1 Salmonella enterica strain PNUSAS359203 SAMN36027501-rid18571733.guided.22, whole genome shotgun sequence	5825..6262	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUDG010000019.1 Salmonella enterica strain PNUSAS359203 SAMN36027501-rid18571733.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNUDG010000020.1 Salmonella enterica strain PNUSAS359203 SAMN36027501-rid18571733.denovo.21, whole genome shotgun sequence	3385..3646																																																avrA	ABNUDG010000002.1	140715..141584	99.54	870	0						
GCA_032665745.1_PDT001792255.1_genomic.fna	Salmonella_enterica	0.5207	337.686 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUDI010000002.1 Salmonella enterica strain PNUSAS359213 SAMN36027520-rid18571713.denovo.02, whole genome shotgun sequence	462215..462652	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUDI010000037.1 Salmonella enterica strain PNUSAS359213 SAMN36027520-rid18571713.guided.22, whole genome shotgun sequence	13865..14302	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUDI010000001.1	551339..552208	99.195	870	0						
GCA_032665765.1_PDT001792256.1_genomic.fna	Salmonella_enterica	0.5204	721.866 KB	3	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNUDH010000002.1 Salmonella enterica strain PNUSAS359197 SAMN36027518-rid18571723.denovo.02, whole genome shotgun sequence	717339..717776	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNUDH010000024.1 Salmonella enterica strain PNUSAS359197 SAMN36027518-rid18571723.guided.16, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032665825.1_PDT001792252.1_genomic.fna	Salmonella_enterica	0.5211	380.104 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNUDK010000001.1 Salmonella enterica strain PNUSAS359207 SAMN36027505-rid18571683.denovo.01, whole genome shotgun sequence	482186..482623	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNUDK010000032.1 Salmonella enterica strain PNUSAS359207 SAMN36027505-rid18571683.guided.25, whole genome shotgun sequence	1656..2093	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNUDK010000016.1 Salmonella enterica strain PNUSAS359207 SAMN36027505-rid18571683.denovo.16, whole genome shotgun sequence	7933..8466																																																						avrA	ABNUDK010000006.1	130566..131435	99.77	870	0						
GCA_032665845.1_PDT001792254.1_genomic.fna	Salmonella_enterica	0.523	306.466 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNUDJ010000002.1 Salmonella enterica strain PNUSAS359206 SAMN36027514-rid18571703.denovo.02, whole genome shotgun sequence	487758..488195	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNUDJ010000032.1 Salmonella enterica strain PNUSAS359206 SAMN36027514-rid18571703.guided.23, whole genome shotgun sequence	6055..6492	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUDJ010000001.1	557472..558340	99.425	870	0						
GCA_032665865.1_PDT001792253.1_genomic.fna	Salmonella_enterica	0.5114	368.073 KB	6	aroC_88,dnaN_26,hemD_30,hisD_84,purE_21,sucA_92,thrA_80*	1845*	61:c:z35	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_84	purE	100	100	purE_21	sucA	100	100	sucA_92	thrA	99.8003992015968	100	thrA_80*	61	c	z35	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:c:z35		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUDL010000001.1 Salmonella enterica strain PNUSAS359198 SAMN36027517-rid18571693.denovo.01, whole genome shotgun sequence	111881..112318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNUDL010000049.1 Salmonella enterica strain PNUSAS359198 SAMN36027517-rid18571693.guided.32, whole genome shotgun sequence	3309..3746	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUDL010000002.1	89816..90685	96.552	870	0						
GCA_032665925.1_PDT001792251.1_genomic.fna	Salmonella_enterica	0.5214	268.335 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUDN010000001.1 Salmonella enterica strain PNUSAS359210 SAMN36027508-rid18571673.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUDN010000050.1 Salmonella enterica strain PNUSAS359210 SAMN36027508-rid18571673.guided.32, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUDN010000025.1 Salmonella enterica strain PNUSAS359210 SAMN36027508-rid18571673.denovo.25, whole genome shotgun sequence	44755..45397	enterobacteriales	IncFII(S)	100	262 / 262	ABNUDN010000025.1 Salmonella enterica strain PNUSAS359210 SAMN36027508-rid18571673.denovo.25, whole genome shotgun sequence	29409..29670																																																avrA	ABNUDN010000008.1	94133..95001	100	869	0						
GCA_032666025.1_PDT001792250.1_genomic.fna	Salmonella_enterica	0.5202	407.368 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNUDM010000001.1 Salmonella enterica strain PNUSAS359205 SAMN36027511-rid18571663.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNUDM010000026.1 Salmonella enterica strain PNUSAS359205 SAMN36027511-rid18571663.guided.18, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNUDM010000018.1 Salmonella enterica strain PNUSAS359205 SAMN36027511-rid18571663.denovo.21, whole genome shotgun sequence	239..369																																																						avrA	ABNUDM010000002.1	644488..645357	99.425	870	0						
GCA_032667965.1_PDT001792214.1_genomic.fna	Salmonella_enterica	0.5189	279.388 KB	6	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUES010000001.1 Salmonella enterica strain PNUSAS359384 SAMN36026434-rid18571303.denovo.01, whole genome shotgun sequence	673056..673493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUES010000035.1 Salmonella enterica strain PNUSAS359384 SAMN36026434-rid18571303.guided.28, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUES010000007.1	93871..94739	99.31	870	0						
GCA_032668125.1_PDT001792163.1_genomic.fna	Salmonella_enterica	0.5218	225.556 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUEW010000002.1 Salmonella enterica strain PNUSAS359386 SAMN36026438-rid18571233.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUEW010000070.1 Salmonella enterica strain PNUSAS359386 SAMN36026438-rid18571233.guided.35, whole genome shotgun sequence	2042..2479	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUEW010000033.1 Salmonella enterica strain PNUSAS359386 SAMN36026438-rid18571233.denovo.36, whole genome shotgun sequence	4377..5019	enterobacteriales	IncFII(S)	100	262 / 262	ABNUEW010000058.1 Salmonella enterica strain PNUSAS359386 SAMN36026438-rid18571233.denovo.61, whole genome shotgun sequence	785..1046																																																avrA	ABNUEW010000003.1	401421..402289	100	869	0						
GCA_032668165.1_PDT001792162.1_genomic.fna	Salmonella_enterica	0.5211	412.183 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUEX010000001.1 Salmonella enterica strain PNUSAS359377 SAMN36026424-rid18571223.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUEX010000028.1 Salmonella enterica strain PNUSAS359377 SAMN36026424-rid18571223.guided.20, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUEX010000020.1 Salmonella enterica strain PNUSAS359377 SAMN36026424-rid18571223.denovo.23, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNUEX010000022.1 Salmonella enterica strain PNUSAS359377 SAMN36026424-rid18571223.denovo.25, whole genome shotgun sequence	3392..3653																																																avrA	ABNUEX010000002.1	553312..554181	99.54	870	0						
GCA_032668225.1_PDT001792161.1_genomic.fna	Salmonella_enterica	0.5209	412.336 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUEY010000001.1 Salmonella enterica strain PNUSAS359389 SAMN36026437-rid18571213.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUEY010000026.1 Salmonella enterica strain PNUSAS359389 SAMN36026437-rid18571213.guided.15, whole genome shotgun sequence	32296..32733	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUEY010000018.1 Salmonella enterica strain PNUSAS359389 SAMN36026437-rid18571213.denovo.21, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNUEY010000020.1 Salmonella enterica strain PNUSAS359389 SAMN36026437-rid18571213.denovo.23, whole genome shotgun sequence	3404..3665																																																avrA	ABNUEY010000002.1	553077..553946	99.54	870	0						
GCA_032668245.1_PDT001792160.1_genomic.fna	Salmonella_enterica	0.5208	491.085 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUEZ010000001.1 Salmonella enterica strain PNUSAS359378 SAMN36026435-rid18571203.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUEZ010000026.1 Salmonella enterica strain PNUSAS359378 SAMN36026435-rid18571203.guided.15, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUEZ010000016.1 Salmonella enterica strain PNUSAS359378 SAMN36026435-rid18571203.denovo.19, whole genome shotgun sequence	6835..7477	enterobacteriales	IncFII(S)	100	262 / 262	ABNUEZ010000020.1 Salmonella enterica strain PNUSAS359378 SAMN36026435-rid18571203.denovo.23, whole genome shotgun sequence	3369..3630																																																avrA	ABNUEZ010000002.1	552804..553673	99.54	870	0						
GCA_032668265.1_PDT001792159.1_genomic.fna	Salmonella_enterica	0.5222	350.88 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUFB010000001.1 Salmonella enterica strain PNUSAS359380 SAMN36026432-rid18571193.denovo.01, whole genome shotgun sequence	645479..645916	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUFB010000026.1 Salmonella enterica strain PNUSAS359380 SAMN36026432-rid18571193.guided.22, whole genome shotgun sequence	1413..1850	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUFB010000007.1	94982..95852	99.656	871	0						
GCA_032668325.1_PDT001792158.1_genomic.fna	Salmonella_enterica	0.5209	411.992 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUFA010000001.1 Salmonella enterica strain PNUSAS359390 SAMN36026431-rid18571183.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUFA010000040.1 Salmonella enterica strain PNUSAS359390 SAMN36026431-rid18571183.guided.24, whole genome shotgun sequence	20618..21055	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUFA010000008.1	192389..193259	99.196	871	0						
GCA_032668405.1_PDT001792157.1_genomic.fna	Salmonella_enterica	0.5222	345.867 KB	5	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUFC010000004.1 Salmonella enterica strain PNUSAS359383 SAMN36026428-rid18571173.denovo.04, whole genome shotgun sequence	252456..252893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUFC010000030.1 Salmonella enterica strain PNUSAS359383 SAMN36026428-rid18571173.denovo.34, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNUFC010000030.1 Salmonella enterica strain PNUSAS359383 SAMN36026428-rid18571173.denovo.34, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNUFC010000030.1 Salmonella enterica strain PNUSAS359383 SAMN36026428-rid18571173.denovo.34, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNUFC010000030.1 Salmonella enterica strain PNUSAS359383 SAMN36026428-rid18571173.denovo.34, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNUFC010000030.1 Salmonella enterica strain PNUSAS359383 SAMN36026428-rid18571173.denovo.34, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNUFC010000046.1 Salmonella enterica strain PNUSAS359383 SAMN36026428-rid18571173.guided.31, whole genome shotgun sequence	5823..6260	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUFC010000047.1 Salmonella enterica strain PNUSAS359383 SAMN36026428-rid18571173.guided.33, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNUFC010000047.1 Salmonella enterica strain PNUSAS359383 SAMN36026428-rid18571173.guided.33, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNUFC010000047.1 Salmonella enterica strain PNUSAS359383 SAMN36026428-rid18571173.guided.33, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNUFC010000047.1 Salmonella enterica strain PNUSAS359383 SAMN36026428-rid18571173.guided.33, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNUFC010000047.1 Salmonella enterica strain PNUSAS359383 SAMN36026428-rid18571173.guided.33, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNUFC010000031.1 Salmonella enterica strain PNUSAS359383 SAMN36026428-rid18571173.denovo.36, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUFC010000048.1 Salmonella enterica strain PNUSAS359383 SAMN36026428-rid18571173.guided.35, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNUFC010000035.1 Salmonella enterica strain PNUSAS359383 SAMN36026428-rid18571173.denovo.40, whole genome shotgun sequence	805..997																																																						avrA	ABNUFC010000002.1	527601..528470	99.655	870	0						
GCA_032668425.1_PDT001792156.1_genomic.fna	Salmonella_enterica	0.5212	225.424 KB	6	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUFD010000001.1 Salmonella enterica strain PNUSAS359382 SAMN36026425-rid18571163.denovo.01, whole genome shotgun sequence	348227..348664	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUFD010000039.1 Salmonella enterica strain PNUSAS359382 SAMN36026425-rid18571163.guided.26, whole genome shotgun sequence	8075..8512	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUFD010000012.1	94265..95134	99.425	870	0						
GCA_032668445.1_PDT001792155.1_genomic.fna	Salmonella_enterica	0.5217	231.421 KB	6	aroC_43,dnaN_41,hemD_16,hisD_13,purE_41,sucA_13,thrA_4	2328	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_41	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUFE010000001.1 Salmonella enterica strain PNUSAS359388 SAMN36026427-rid18571153.denovo.01, whole genome shotgun sequence	152162..152599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUFE010000046.1 Salmonella enterica strain PNUSAS359388 SAMN36026427-rid18571153.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032668465.1_PDT001792154.1_genomic.fna	Salmonella_enterica	0.5218	416.403 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUFF010000001.1 Salmonella enterica strain PNUSAS359391 SAMN36026430-rid18571143.denovo.01, whole genome shotgun sequence	173847..174284	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUFF010000052.1 Salmonella enterica strain PNUSAS359391 SAMN36026430-rid18571143.guided.12, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNUFF010000023.1 Salmonella enterica strain PNUSAS359391 SAMN36026430-rid18571143.denovo.26, whole genome shotgun sequence	2322..2463																																																						avrA	ABNUFF010000003.1	39350..40219	98.966	870	0						
GCA_032668645.1_PDT001792148.1_genomic.fna	Salmonella_enterica	0.5218	273.329 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUFK010000002.1 Salmonella enterica strain PNUSAS359339 SAMN36026034-rid18571083.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUFK010000038.1 Salmonella enterica strain PNUSAS359339 SAMN36026034-rid18571083.guided.24, whole genome shotgun sequence	20567..21004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUFK010000017.1 Salmonella enterica strain PNUSAS359339 SAMN36026034-rid18571083.denovo.17, whole genome shotgun sequence	48448..49090	enterobacteriales	IncFII(S)	100	262 / 262	ABNUFK010000017.1 Salmonella enterica strain PNUSAS359339 SAMN36026034-rid18571083.denovo.17, whole genome shotgun sequence	64175..64436																																																avrA	ABNUFK010000004.1	174661..175529	100	869	0						
GCA_032668745.1_PDT001792145.1_genomic.fna	Salmonella_enterica	0.5225	263.497 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUFN010000001.1 Salmonella enterica strain PNUSAS359352 SAMN36026020-rid18571053.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNUFN010000039.1 Salmonella enterica strain PNUSAS359352 SAMN36026020-rid18571053.guided.27, whole genome shotgun sequence	3526..3963	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNUFN010000040.1 Salmonella enterica strain PNUSAS359352 SAMN36026020-rid18571053.guided.28, whole genome shotgun sequence	3526..3963	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	96.89	193 / 193	ABNUFN010000032.1 Salmonella enterica strain PNUSAS359352 SAMN36026020-rid18571053.denovo.36, whole genome shotgun sequence	474..666																																																						avrA	ABNUFN010000005.1	149867..150736	99.655	870	0						
GCA_032668765.1_PDT001792147.1_genomic.fna	Salmonella_enterica	0.5204	249.799 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),IncFIB(pHCM2)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUFL010000002.1 Salmonella enterica strain PNUSAS359337 SAMN36026037-rid18571073.denovo.02, whole genome shotgun sequence	78268..78705	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUFL010000054.1 Salmonella enterica strain PNUSAS359337 SAMN36026037-rid18571073.guided.29, whole genome shotgun sequence	12427..12864	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNUFL010000022.1 Salmonella enterica strain PNUSAS359337 SAMN36026037-rid18571073.denovo.22, whole genome shotgun sequence	5050..5865	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNUFL010000057.1 Salmonella enterica strain PNUSAS359337 SAMN36026037-rid18571073.guided.44, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNUFL010000022.1 Salmonella enterica strain PNUSAS359337 SAMN36026037-rid18571073.denovo.22, whole genome shotgun sequence	1674..2873	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUFL010000057.1 Salmonella enterica strain PNUSAS359337 SAMN36026037-rid18571073.guided.44, whole genome shotgun sequence	4544..5743	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNUFL010000043.1 Salmonella enterica strain PNUSAS359337 SAMN36026037-rid18571073.denovo.47, whole genome shotgun sequence	371..501	enterobacteriales	IncFIB(pHCM2)	98.4	875 / 875	ABNUFL010000016.1 Salmonella enterica strain PNUSAS359337 SAMN36026037-rid18571073.denovo.16, whole genome shotgun sequence	74694..75568																																																avrA	ABNUFL010000001.1	97953..98822	99.885	870	0						
GCA_032668785.1_PDT001792146.1_genomic.fna	Salmonella_enterica	0.5221	225.555 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUFM010000005.1 Salmonella enterica strain PNUSAS359340 SAMN36026036-rid18571063.denovo.05, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUFM010000040.1 Salmonella enterica strain PNUSAS359340 SAMN36026036-rid18571063.guided.32, whole genome shotgun sequence	9535..9972	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUFM010000019.1 Salmonella enterica strain PNUSAS359340 SAMN36026036-rid18571063.denovo.19, whole genome shotgun sequence	86323..86965	enterobacteriales	IncFII(S)	100	262 / 262	ABNUFM010000019.1 Salmonella enterica strain PNUSAS359340 SAMN36026036-rid18571063.denovo.19, whole genome shotgun sequence	70977..71238																																																avrA	ABNUFM010000001.1	401494..402362	100	869	0						
GCA_032668845.1_PDT001792143.1_genomic.fna	Salmonella_enterica	0.5203	386.145 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUFP010000001.1 Salmonella enterica strain PNUSAS359353 SAMN36026021-rid18571033.denovo.01, whole genome shotgun sequence	395498..395935	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUFP010000031.1 Salmonella enterica strain PNUSAS359353 SAMN36026021-rid18571033.guided.17, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032668885.1_PDT001792144.1_genomic.fna	Salmonella_enterica	0.5226	445.815 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032668945.1_PDT001792142.1_genomic.fna	Salmonella_enterica	0.5222	327.9 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUFQ010000001.1 Salmonella enterica strain PNUSAS359341 SAMN36026018-rid18571023.denovo.01, whole genome shotgun sequence	206326..206763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUFQ010000046.1 Salmonella enterica strain PNUSAS359341 SAMN36026018-rid18571023.guided.25, whole genome shotgun sequence	5461..5898	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNUFQ010000037.1 Salmonella enterica strain PNUSAS359341 SAMN36026018-rid18571023.denovo.40, whole genome shotgun sequence	547..675																																																						avrA	ABNUFQ010000006.1	147026..147895	98.966	870	0						
GCA_032668985.1_PDT001792141.1_genomic.fna	Salmonella_enterica	0.52	478.499 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	0		5	IncFIB(S),IncFII,IncFII(S),IncM1,IncX4	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUFR010000001.1 Salmonella enterica strain PNUSAS359345 SAMN36026029-rid18571013.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUFR010000031.1 Salmonella enterica strain PNUSAS359345 SAMN36026029-rid18571013.guided.16, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNUFR010000014.1 Salmonella enterica strain PNUSAS359345 SAMN36026029-rid18571013.denovo.14, whole genome shotgun sequence	14122..14982	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNUFR010000034.1 Salmonella enterica strain PNUSAS359345 SAMN36026029-rid18571013.guided.24, whole genome shotgun sequence	12627..13487	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUFR010000020.1 Salmonella enterica strain PNUSAS359345 SAMN36026029-rid18571013.denovo.23, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII	99.24	262 / 261	ABNUFR010000014.1 Salmonella enterica strain PNUSAS359345 SAMN36026029-rid18571013.denovo.14, whole genome shotgun sequence	10495..10756		enterobacteriales	IncFII(S)	100	262 / 262	ABNUFR010000016.1 Salmonella enterica strain PNUSAS359345 SAMN36026029-rid18571013.denovo.17, whole genome shotgun sequence	5998..6259		enterobacteriales	IncM1	97.57	742 / 739	ABNUFR010000015.1 Salmonella enterica strain PNUSAS359345 SAMN36026029-rid18571013.denovo.15, whole genome shotgun sequence	25726..26464		enterobacteriales	IncX4	100	374 / 374	ABNUFR010000018.1 Salmonella enterica strain PNUSAS359345 SAMN36026029-rid18571013.denovo.19, whole genome shotgun sequence	2163..2536																											avrA	ABNUFR010000002.1	585348..586217	99.54	870	0						
GCA_032669885.1_PDT001792137.1_genomic.fna	Salmonella_enterica	0.52	199.241 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUFW010000005.1 Salmonella enterica strain PNUSAS359342 SAMN36026015-rid18570973.denovo.05, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUFW010000056.1 Salmonella enterica strain PNUSAS359342 SAMN36026015-rid18570973.guided.40, whole genome shotgun sequence	7145..7582	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUFW010000019.1 Salmonella enterica strain PNUSAS359342 SAMN36026015-rid18570973.denovo.19, whole genome shotgun sequence	6826..7468	enterobacteriales	IncFII(S)	100	262 / 262	ABNUFW010000019.1 Salmonella enterica strain PNUSAS359342 SAMN36026015-rid18570973.denovo.19, whole genome shotgun sequence	22553..22814		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNUFW010000021.1 Salmonella enterica strain PNUSAS359342 SAMN36026015-rid18570973.denovo.21, whole genome shotgun sequence	67367..67508		enterobacteriales	IncI2(Delta)	97.83	322 / 316	ABNUFW010000025.1 Salmonella enterica strain PNUSAS359342 SAMN36026015-rid18570973.denovo.25, whole genome shotgun sequence	29969..30290																																		avrA	ABNUFW010000003.1	209579..210447	100	869	0						
GCA_032669905.1_PDT001792140.1_genomic.fna	Salmonella_enterica	0.521	430.027 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUFS010000001.1 Salmonella enterica strain PNUSAS359348 SAMN36026027-rid18571003.denovo.01, whole genome shotgun sequence	628584..629021	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUFS010000027.1 Salmonella enterica strain PNUSAS359348 SAMN36026027-rid18571003.guided.23, whole genome shotgun sequence	1876..2313	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNUFS010000017.1 Salmonella enterica strain PNUSAS359348 SAMN36026027-rid18571003.denovo.17, whole genome shotgun sequence	34944..35477																																																						avrA	ABNUFS010000007.1	192349..193219	99.196	871	0						
GCA_032669945.1_PDT001792136.1_genomic.fna	Salmonella_enterica	0.5202	289.612 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUFX010000001.1 Salmonella enterica strain PNUSAS359347 SAMN36026017-rid18570963.denovo.01, whole genome shotgun sequence	493916..494353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUFX010000033.1 Salmonella enterica strain PNUSAS359347 SAMN36026017-rid18570963.guided.19, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUFX010000021.1 Salmonella enterica strain PNUSAS359347 SAMN36026017-rid18570963.denovo.24, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNUFX010000017.1 Salmonella enterica strain PNUSAS359347 SAMN36026017-rid18570963.denovo.18, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNUFX010000018.1 Salmonella enterica strain PNUSAS359347 SAMN36026017-rid18570963.denovo.20, whole genome shotgun sequence	32011..32384																																									avrA	ABNUFX010000002.1	175109..175978	99.54	870	0						
GCA_032669965.1_PDT001792139.1_genomic.fna	Salmonella_enterica	0.5205	696.594 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUFT010000001.1 Salmonella enterica strain PNUSAS359344 SAMN36026026-rid18570993.denovo.01, whole genome shotgun sequence	382753..383190	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUFT010000019.1 Salmonella enterica strain PNUSAS359344 SAMN36026026-rid18570993.guided.14, whole genome shotgun sequence	8823..9260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032669985.1_PDT001792138.1_genomic.fna	Salmonella_enterica	0.5216	238.812 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUFV010000001.1 Salmonella enterica strain PNUSAS359343 SAMN36026024-rid18570983.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUFV010000036.1 Salmonella enterica strain PNUSAS359343 SAMN36026024-rid18570983.denovo.39, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUFV010000036.1 Salmonella enterica strain PNUSAS359343 SAMN36026024-rid18570983.denovo.39, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNUFV010000049.1 Salmonella enterica strain PNUSAS359343 SAMN36026024-rid18570983.guided.29, whole genome shotgun sequence	20578..21015	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUFV010000052.1 Salmonella enterica strain PNUSAS359343 SAMN36026024-rid18570983.guided.41, whole genome shotgun sequence	2019..2855	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUFV010000052.1 Salmonella enterica strain PNUSAS359343 SAMN36026024-rid18570983.guided.41, whole genome shotgun sequence	1216..2019	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNUFV010000041.1 Salmonella enterica strain PNUSAS359343 SAMN36026024-rid18570983.denovo.46, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNUFV010000053.1 Salmonella enterica strain PNUSAS359343 SAMN36026024-rid18570983.guided.45, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNUFV010000036.1 Salmonella enterica strain PNUSAS359343 SAMN36026024-rid18570983.denovo.39, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNUFV010000052.1 Salmonella enterica strain PNUSAS359343 SAMN36026024-rid18570983.guided.41, whole genome shotgun sequence	340..1155	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNUFV010000030.1 Salmonella enterica strain PNUSAS359343 SAMN36026024-rid18570983.denovo.31, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNUFV010000051.1 Salmonella enterica strain PNUSAS359343 SAMN36026024-rid18570983.guided.33, whole genome shotgun sequence	2564..3769	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNUFV010000002.1	407552..408421	99.885	870	0						
GCA_032671485.1_PDT001791999.1_genomic.fna	Salmonella_enterica	0.5201	478.475 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUHF010000001.1 Salmonella enterica strain 23TN05CL01N-S SAMN36020763-rid18569593.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUHF010000025.1 Salmonella enterica strain 23TN05CL01N-S SAMN36020763-rid18569593.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUHF010000012.1 Salmonella enterica strain 23TN05CL01N-S SAMN36020763-rid18569593.denovo.14, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNUHF010000012.1 Salmonella enterica strain 23TN05CL01N-S SAMN36020763-rid18569593.denovo.14, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNUHF010000013.1 Salmonella enterica strain 23TN05CL01N-S SAMN36020763-rid18569593.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNUHF010000002.1	553690..554559	99.54	870	0						
GCA_032672285.1_PDT001791994.1_genomic.fna	Salmonella_enterica	0.5192	308.786 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUHK010000001.1 Salmonella enterica strain 23TN05GT02N-S SAMN36020762-rid18569543.denovo.01, whole genome shotgun sequence	486109..486546	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUHK010000049.1 Salmonella enterica strain 23TN05GT02N-S SAMN36020762-rid18569543.guided.35, whole genome shotgun sequence	3389..3826	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNUHK010000005.1 Salmonella enterica strain 23TN05GT02N-S SAMN36020762-rid18569543.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNUHK010000050.1 Salmonella enterica strain 23TN05GT02N-S SAMN36020762-rid18569543.guided.36, whole genome shotgun sequence	1131..1553	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	ABNUHK010000016.1 Salmonella enterica strain 23TN05GT02N-S SAMN36020762-rid18569543.denovo.16, whole genome shotgun sequence	68321..69526	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNUHK010000047.1 Salmonella enterica strain 23TN05GT02N-S SAMN36020762-rid18569543.guided.26, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNUHK010000016.1 Salmonella enterica strain 23TN05GT02N-S SAMN36020762-rid18569543.denovo.16, whole genome shotgun sequence	75912..76053	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNUHK010000047.1 Salmonella enterica strain 23TN05GT02N-S SAMN36020762-rid18569543.guided.26, whole genome shotgun sequence	3169..3310																																																avrA	ABNUHK010000002.1	123552..124421	99.195	870	0						
GCA_032672305.1_PDT001791996.1_genomic.fna	Salmonella_enterica	0.5218	225.554 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUHJ010000002.1 Salmonella enterica strain PNUSAS359235 SAMN36021189-rid18569563.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUHJ010000062.1 Salmonella enterica strain PNUSAS359235 SAMN36021189-rid18569563.guided.45, whole genome shotgun sequence	784..1221	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUHJ010000029.1 Salmonella enterica strain PNUSAS359235 SAMN36021189-rid18569563.denovo.29, whole genome shotgun sequence	24775..25417	enterobacteriales	IncFII(S)	100	262 / 262	ABNUHJ010000029.1 Salmonella enterica strain PNUSAS359235 SAMN36021189-rid18569563.denovo.29, whole genome shotgun sequence	9429..9690																																																avrA	ABNUHJ010000004.1	175018..175886	100	869	0						
GCA_032672335.1_PDT001791997.1_genomic.fna	Salmonella_enterica	0.5222	388.084 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNUHG010000001.1 Salmonella enterica strain PNUSAS359234 SAMN36021187-rid18569573.denovo.01, whole genome shotgun sequence	181488..181925	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNUHG010000024.1 Salmonella enterica strain PNUSAS359234 SAMN36021187-rid18569573.guided.22, whole genome shotgun sequence	743..1180	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUHG010000007.1	182941..183810	99.77	870	0						
GCA_032674985.1_PDT001791944.1_genomic.fna	Salmonella_enterica	0.5199	454.368 KB	4	aroC_84,dnaN_342,hemD_256,hisD_435,purE_378,sucA_182,thrA_362	1456	18:b:1,5	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_84	dnaN	100	100	dnaN_342	hemD	100	100	hemD_256	hisD	100	100	hisD_435	purE	100	100	purE_378	sucA	100	100	sucA_182	thrA	100	100	thrA_362	18	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fluntern		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUJA010000001.1 Salmonella enterica strain PNUSAS359014 SAMN36019167-rid18568963.denovo.01, whole genome shotgun sequence	562863..563300	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.38	371/438	ABNUJA010000062.1 Salmonella enterica strain PNUSAS359014 SAMN36019167-rid18568963.guided.49, whole genome shotgun sequence	1..371	Amikacin, Tobramycin	NC_003197	fosA7	99.76	423/423	ABNUJA010000002.1 Salmonella enterica strain PNUSAS359014 SAMN36019167-rid18568963.denovo.02, whole genome shotgun sequence	389382..389804	Fosfomycin	LAPJ01000014	fosA7	99.76	423/423	ABNUJA010000060.1 Salmonella enterica strain PNUSAS359014 SAMN36019167-rid18568963.guided.29, whole genome shotgun sequence	3300..3722	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNUJA010000019.1 Salmonella enterica strain PNUSAS359014 SAMN36019167-rid18568963.denovo.19, whole genome shotgun sequence	15752..16285																																																						avrA	ABNUJA010000003.1	414343..415212	98.621	870	0						
GCA_032675005.1_PDT001791942.1_genomic.fna	Salmonella_enterica	0.5221	648.425 KB	2	aroC_16,dnaN_16,hemD_20,hisD_1044,purE_8,sucA_12,thrA_18	4856	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_1044	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUJC010000001.1 Salmonella enterica strain PNUSAS359045 SAMN36019124-rid18569043.denovo.01, whole genome shotgun sequence	442643..443080	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUJC010000017.1 Salmonella enterica strain PNUSAS359045 SAMN36019124-rid18569043.guided.14, whole genome shotgun sequence	8110..8547	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUJC010000002.1	510899..511765	98.966	870	0						
GCA_032675025.1_PDT001791943.1_genomic.fna	Salmonella_enterica	0.5209	278.474 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUJB010000003.1 Salmonella enterica strain PNUSAS358873 SAMN36017724-rid18568953.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUJB010000052.1 Salmonella enterica strain PNUSAS358873 SAMN36017724-rid18568953.guided.28, whole genome shotgun sequence	17964..18401	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNUJB010000001.1	401420..402288	100	869	0						
GCA_032675035.1_PDT001791941.1_genomic.fna	Salmonella_enterica	0.5213	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUJE010000001.1 Salmonella enterica strain PNUSAS358864 SAMN36017721-rid18568943.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUJE010000025.1 Salmonella enterica strain PNUSAS358864 SAMN36017721-rid18568943.denovo.25, whole genome shotgun sequence	1548..2339	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUJE010000025.1 Salmonella enterica strain PNUSAS358864 SAMN36017721-rid18568943.denovo.25, whole genome shotgun sequence	1548..2339	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNUJE010000046.1 Salmonella enterica strain PNUSAS358864 SAMN36017721-rid18568943.guided.26, whole genome shotgun sequence	1210..2001	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUJE010000046.1 Salmonella enterica strain PNUSAS358864 SAMN36017721-rid18568943.guided.26, whole genome shotgun sequence	1210..2001	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNUJE010000049.1 Salmonella enterica strain PNUSAS358864 SAMN36017721-rid18568943.guided.40, whole genome shotgun sequence	2418..2855	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNUJE010000025.1 Salmonella enterica strain PNUSAS358864 SAMN36017721-rid18568943.denovo.25, whole genome shotgun sequence	2844..3683	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUJE010000046.1 Salmonella enterica strain PNUSAS358864 SAMN36017721-rid18568943.guided.26, whole genome shotgun sequence	2506..3345	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNUJE010000025.1 Salmonella enterica strain PNUSAS358864 SAMN36017721-rid18568943.denovo.25, whole genome shotgun sequence	16200..17399	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUJE010000046.1 Salmonella enterica strain PNUSAS358864 SAMN36017721-rid18568943.guided.26, whole genome shotgun sequence	15862..17061	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNUJE010000029.1 Salmonella enterica strain PNUSAS358864 SAMN36017721-rid18568943.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABNUJE010000003.1	150953..151822	99.655	870	0						
GCA_032675165.1_PDT001791940.1_genomic.fna	Salmonella_enterica	0.5208	656.004 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUJD010000001.1 Salmonella enterica strain PNUSAS359043 SAMN36019170-rid18568933.denovo.01, whole genome shotgun sequence	384845..385282	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUJD010000038.1 Salmonella enterica strain PNUSAS359043 SAMN36019170-rid18568933.guided.17, whole genome shotgun sequence	634..1071	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.39	446 / 445	ABNUJD010000013.1 Salmonella enterica strain PNUSAS359043 SAMN36019170-rid18568933.denovo.13, whole genome shotgun sequence	44225..44669	enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABNUJD010000013.1 Salmonella enterica strain PNUSAS359043 SAMN36019170-rid18568933.denovo.13, whole genome shotgun sequence	44930..45142																																																avrA	ABNUJD010000003.1	504340..505210	99.196	871	0						
GCA_032675185.1_PDT001791939.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUJF010000001.1 Salmonella enterica strain PNUSAS359044 SAMN36019110-rid18568923.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUJF010000024.1 Salmonella enterica strain PNUSAS359044 SAMN36019110-rid18568923.guided.17, whole genome shotgun sequence	2309..2746	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUJF010000012.1 Salmonella enterica strain PNUSAS359044 SAMN36019110-rid18568923.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNUJF010000016.1 Salmonella enterica strain PNUSAS359044 SAMN36019110-rid18568923.denovo.18, whole genome shotgun sequence	3423..3684																																																avrA	ABNUJF010000002.1	553636..554505	99.54	870	0						
GCA_032675225.1_PDT001791938.1_genomic.fna	Salmonella_enterica	0.5209	489.665 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUJG010000001.1 Salmonella enterica strain PNUSAS359176 SAMN36019651-rid18568913.denovo.01, whole genome shotgun sequence	293258..293695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUJG010000023.1 Salmonella enterica strain PNUSAS359176 SAMN36019651-rid18568913.guided.14, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUJG010000014.1 Salmonella enterica strain PNUSAS359176 SAMN36019651-rid18568913.denovo.16, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNUJG010000007.1 Salmonella enterica strain PNUSAS359176 SAMN36019651-rid18568913.denovo.07, whole genome shotgun sequence	3403..3664																																																avrA	ABNUJG010000002.1	583965..584834	99.54	870	0						
GCA_032675245.1_PDT001791937.1_genomic.fna	Salmonella_enterica	0.5207	162.801 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNUJH010000010.1 Salmonella enterica strain PNUSAS359179 SAMN36019654-rid18568903.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNUJH010000059.1 Salmonella enterica strain PNUSAS359179 SAMN36019654-rid18568903.guided.43, whole genome shotgun sequence	653..1087	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032675255.1_PDT001791936.1_genomic.fna	Salmonella_enterica	0.5212	328.154 KB	6	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNUJI010000002.1 Salmonella enterica strain PNUSAS359008 SAMN36019116-rid18568893.denovo.02, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNUJI010000030.1 Salmonella enterica strain PNUSAS359008 SAMN36019116-rid18568893.guided.20, whole genome shotgun sequence	15319..15756	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNUJI010000004.1	150474..151343	99.77	870	0						
GCA_032675285.1_PDT001791935.1_genomic.fna	Salmonella_enterica	0.5207	175.879 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aadA24,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA24,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,floR,floR,qnrB19,qnrB19,sul2,sul2,sul2,sul2,tet(M),tet(B),tet(M),tet(B),dfrA12,dfrA12	0		4	Col(pHAD28),Col(pHAD28),IncFIB(AP001918),IncFIC(FII),IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUJJ010000001.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.denovo.01, whole genome shotgun sequence	458978..459415	Amikacin, Tobramycin	NC_003197	aadA24	99.36	780/780	ABNUJJ010000048.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.denovo.50, whole genome shotgun sequence	4690..5469	Spectinomycin, Streptomycin	DQ677333	aph(6)-Id	100	837/837	ABNUJJ010000070.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.denovo.78, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUJJ010000070.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.denovo.78, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNUJJ010000084.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.guided.36, whole genome shotgun sequence	37683..38120	Amikacin, Tobramycin	NC_003197	aadA24	99.36	780/780	ABNUJJ010000086.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.guided.52, whole genome shotgun sequence	4731..5510	Spectinomycin, Streptomycin	DQ677333	aph(6)-Id	100	837/837	ABNUJJ010000091.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.guided.77, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUJJ010000091.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.guided.77, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNUJJ010000069.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.denovo.76, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNUJJ010000092.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.guided.80, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.11	1214/1215	ABNUJJ010000064.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.denovo.69, whole genome shotgun sequence	1179..2392	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNUJJ010000089.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.guided.71, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNUJJ010000066.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.denovo.73, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNUJJ010000090.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.guided.72, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABNUJJ010000093.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.guided.85, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNUJJ010000094.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.guided.86, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNUJJ010000095.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.guided.87, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNUJJ010000096.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.guided.88, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(M)	96.15	1920/1920	ABNUJJ010000048.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.denovo.50, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNUJJ010000049.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.denovo.51, whole genome shotgun sequence	6922..8127	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNUJJ010000086.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.guided.52, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNUJJ010000087.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.guided.59, whole genome shotgun sequence	4114..5319	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABNUJJ010000048.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.denovo.50, whole genome shotgun sequence	5889..6386	Trimethoprim	AM040708	dfrA12	100	498/498	ABNUJJ010000086.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.guided.52, whole genome shotgun sequence	5930..6427	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	100	131 / 131	ABNUJJ010000066.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.denovo.73, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNUJJ010000090.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.guided.72, whole genome shotgun sequence	2145..2275		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNUJJ010000057.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.denovo.61, whole genome shotgun sequence	2294..2975		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNUJJ010000035.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.denovo.35, whole genome shotgun sequence	35142..35638		enterobacteriales	IncY	98.69	765 / 765	ABNUJJ010000019.1 Salmonella enterica strain PNUSAS359177 SAMN36019652-rid18568883.denovo.19, whole genome shotgun sequence	54644..55408																											avrA	ABNUJJ010000002.1	434779..435648	99.885	870	0						
GCA_032675375.1_PDT001791934.1_genomic.fna	Salmonella_enterica	0.5209	398.019 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUJK010000001.1 Salmonella enterica strain PNUSAS359038 SAMN36019112-rid18568873.denovo.01, whole genome shotgun sequence	587578..588015	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUJK010000045.1 Salmonella enterica strain PNUSAS359038 SAMN36019112-rid18568873.guided.29, whole genome shotgun sequence	3283..3720	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNUJK010000023.1 Salmonella enterica strain PNUSAS359038 SAMN36019112-rid18568873.denovo.23, whole genome shotgun sequence	11447..12089																																																						avrA	ABNUJK010000005.1	112386..113255	99.425	870	0						
GCA_032675425.1_PDT001791932.1_genomic.fna	Salmonella_enterica	0.5198	149.14 KB	11	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNUJL010000007.1 Salmonella enterica strain PNUSAS359039 SAMN36019109-rid18568853.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNUJL010000064.1 Salmonella enterica strain PNUSAS359039 SAMN36019109-rid18568853.guided.35, whole genome shotgun sequence	16438..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncX1	97.86	374 / 374	ABNUJL010000040.1 Salmonella enterica strain PNUSAS359039 SAMN36019109-rid18568853.denovo.43, whole genome shotgun sequence	14640..15013																																																																	
GCA_032675445.1_PDT001791933.1_genomic.fna	Salmonella_enterica	0.5206	508.796 KB	2	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUJM010000001.1 Salmonella enterica strain PNUSAS359032 SAMN36019173-rid18568863.denovo.01, whole genome shotgun sequence	647863..648300	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUJM010000025.1 Salmonella enterica strain PNUSAS359032 SAMN36019173-rid18568863.guided.14, whole genome shotgun sequence	12676..13113	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUJM010000003.1	149650..150519	99.425	870	0						
GCA_032675825.1_PDT001791901.1_genomic.fna	Salmonella_enterica	0.5227	443.924 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUJV010000001.1 Salmonella enterica strain PNUSAS359013 SAMN36019161-rid18568573.denovo.01, whole genome shotgun sequence	186348..186785	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUJV010000027.1 Salmonella enterica strain PNUSAS359013 SAMN36019161-rid18568573.guided.15, whole genome shotgun sequence	40081..40518	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUJV010000003.1	93999..94868	98.966	870	0						
GCA_032675865.1_PDT001791899.1_genomic.fna	Salmonella_enterica	0.5223	162.25 KB	9	aroC_41,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	2129	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNUJW010000002.1 Salmonella enterica strain PNUSAS359036 SAMN36019164-rid18568553.denovo.02, whole genome shotgun sequence	370687..371124	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNUJW010000057.1 Salmonella enterica strain PNUSAS359036 SAMN36019164-rid18568553.guided.42, whole genome shotgun sequence	1514..1951	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.39	446 / 445	ABNUJW010000025.1 Salmonella enterica strain PNUSAS359036 SAMN36019164-rid18568553.denovo.25, whole genome shotgun sequence	39977..40421	enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABNUJW010000025.1 Salmonella enterica strain PNUSAS359036 SAMN36019164-rid18568553.denovo.25, whole genome shotgun sequence	40682..40894																																																											
GCA_032675885.1_PDT001791897.1_genomic.fna	Salmonella_enterica	0.5211	485.845 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUJZ010000001.1 Salmonella enterica strain PNUSAS359041 SAMN36019158-rid18568533.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUJZ010000045.1 Salmonella enterica strain PNUSAS359041 SAMN36019158-rid18568533.guided.13, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUJZ010000003.1	504146..505016	99.196	871	0						
GCA_032675925.1_PDT001791898.1_genomic.fna	Salmonella_enterica	0.5209	394.076 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNUJY010000001.1 Salmonella enterica strain PNUSAS359035 SAMN36019114-rid18568543.denovo.01, whole genome shotgun sequence	404035..404472	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNUJY010000024.1 Salmonella enterica strain PNUSAS359035 SAMN36019114-rid18568543.guided.15, whole genome shotgun sequence	34151..34588	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUJY010000002.1	544613..545481	99.425	870	0						
GCA_032675985.1_PDT001791895.1_genomic.fna	Salmonella_enterica	0.5223	415.902 KB	4	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	9	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-55,blaTEM-216,blaTEM-214,blaTEM-209,blaTEM-206,blaTEM-141,blaTEM-1B,blaCTX-M-55,blaTEM-214,blaTEM-206,blaTEM-141,blaTEM-1B,tet(A),tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	1	IncQ1	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUKB010000001.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.denovo.01, whole genome shotgun sequence	535617..536054	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUKB010000034.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.guided.28, whole genome shotgun sequence	2120..2557	Amikacin, Tobramycin	NC_003197	blaCTX-M-55	100	876/876	ABNUKB010000024.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.denovo.29, whole genome shotgun sequence	731..1606	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-216	100	738/861	ABNUKB010000024.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.denovo.29, whole genome shotgun sequence	2388..3125	Unknown Beta-lactam	KF944358	blaTEM-214	100	738/861	ABNUKB010000024.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.denovo.29, whole genome shotgun sequence	2388..3125	Unknown Beta-lactam	KP050491	blaTEM-209	100	738/861	ABNUKB010000024.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.denovo.29, whole genome shotgun sequence	2388..3125	Unknown Beta-lactam	KF240808	blaTEM-206	100	738/861	ABNUKB010000024.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.denovo.29, whole genome shotgun sequence	2388..3125	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	100	738/861	ABNUKB010000024.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.denovo.29, whole genome shotgun sequence	2388..3125	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	100	738/861	ABNUKB010000024.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.denovo.29, whole genome shotgun sequence	2388..3125	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABNUKB010000035.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.guided.30, whole genome shotgun sequence	408..1283	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-214	99.87	746/861	ABNUKB010000035.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.guided.30, whole genome shotgun sequence	2065..2810	Unknown Beta-lactam	KP050491	blaTEM-206	99.87	746/861	ABNUKB010000035.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.guided.30, whole genome shotgun sequence	2065..2810	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	99.87	746/861	ABNUKB010000035.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.guided.30, whole genome shotgun sequence	2065..2810	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	99.87	746/861	ABNUKB010000035.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.guided.30, whole genome shotgun sequence	2065..2810	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	ABNUKB010000021.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.denovo.22, whole genome shotgun sequence	2339..3538	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUKB010000032.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.guided.26, whole genome shotgun sequence	3344..4543	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNUKB010000033.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.guided.27, whole genome shotgun sequence	3344..4543	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	IncQ1	100	796 / 796	ABNUKB010000022.1 Salmonella enterica strain PNUSAS358870 SAMN36017712-rid18568513.denovo.24, whole genome shotgun sequence	292..1087																																																						avrA	ABNUKB010000004.1	144730..145599	99.31	870	0						
GCA_032676005.1_PDT001791900.1_genomic.fna	Salmonella_enterica	0.5221	361.677 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUJX010000001.1 Salmonella enterica strain PNUSAS359108 SAMN36017715-rid18568563.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUJX010000035.1 Salmonella enterica strain PNUSAS359108 SAMN36017715-rid18568563.guided.23, whole genome shotgun sequence	6328..6765	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNUJX010000023.1 Salmonella enterica strain PNUSAS359108 SAMN36017715-rid18568563.denovo.26, whole genome shotgun sequence	1506..1636																																																						avrA	ABNUJX010000005.1	147029..147898	98.966	870	0						
GCA_032676045.1_PDT001791893.1_genomic.fna	Salmonella_enterica	0.5211	478.749 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),pKPC-CAV1320	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUKD010000001.1 Salmonella enterica strain PNUSAS359011 SAMN36019150-rid18568493.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUKD010000030.1 Salmonella enterica strain PNUSAS359011 SAMN36019150-rid18568493.guided.16, whole genome shotgun sequence	28146..28583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUKD010000013.1 Salmonella enterica strain PNUSAS359011 SAMN36019150-rid18568493.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNUKD010000017.1 Salmonella enterica strain PNUSAS359011 SAMN36019150-rid18568493.denovo.20, whole genome shotgun sequence	3392..3653		enterobacteriales	pKPC-CAV1320	92.84	810 / 864	ABNUKD010000020.1 Salmonella enterica strain PNUSAS359011 SAMN36019150-rid18568493.denovo.23, whole genome shotgun sequence	946..1753																																									avrA	ABNUKD010000002.1	585276..586145	99.54	870	0						
GCA_032676105.1_PDT001791896.1_genomic.fna	Salmonella_enterica	0.521	699.69 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNUKA010000001.1 Salmonella enterica strain PNUSAS359023 SAMN36019105-rid18568523.denovo.01, whole genome shotgun sequence	596592..597029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNUKA010000017.1 Salmonella enterica strain PNUSAS359023 SAMN36019105-rid18568523.guided.08, whole genome shotgun sequence	34202..34639	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUKA010000002.1	544584..545452	99.425	870	0						
GCA_032676145.1_PDT001791892.1_genomic.fna	Salmonella_enterica	0.5219	208.546 KB	8	aroC_41,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	2129	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNUKE010000002.1 Salmonella enterica strain PNUSAS359040 SAMN36019155-rid18569003.denovo.02, whole genome shotgun sequence	370687..371124	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNUKE010000054.1 Salmonella enterica strain PNUSAS359040 SAMN36019155-rid18569003.guided.38, whole genome shotgun sequence	4076..4513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.39	446 / 445	ABNUKE010000023.1 Salmonella enterica strain PNUSAS359040 SAMN36019155-rid18569003.denovo.24, whole genome shotgun sequence	39977..40421	enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABNUKE010000023.1 Salmonella enterica strain PNUSAS359040 SAMN36019155-rid18569003.denovo.24, whole genome shotgun sequence	40682..40894																																																											
GCA_032676205.1_PDT001791894.1_genomic.fna	Salmonella_enterica	0.5216	245.651 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUKC010000001.1 Salmonella enterica strain PNUSAS359005 SAMN36019121-rid18568503.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUKC010000026.1 Salmonella enterica strain PNUSAS359005 SAMN36019121-rid18568503.denovo.28, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUKC010000026.1 Salmonella enterica strain PNUSAS359005 SAMN36019121-rid18568503.denovo.28, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNUKC010000050.1 Salmonella enterica strain PNUSAS359005 SAMN36019121-rid18568503.guided.15, whole genome shotgun sequence	39664..40101	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUKC010000052.1 Salmonella enterica strain PNUSAS359005 SAMN36019121-rid18568503.guided.34, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUKC010000052.1 Salmonella enterica strain PNUSAS359005 SAMN36019121-rid18568503.guided.34, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNUKC010000026.1 Salmonella enterica strain PNUSAS359005 SAMN36019121-rid18568503.denovo.28, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUKC010000052.1 Salmonella enterica strain PNUSAS359005 SAMN36019121-rid18568503.guided.34, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNUKC010000026.1 Salmonella enterica strain PNUSAS359005 SAMN36019121-rid18568503.denovo.28, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUKC010000053.1 Salmonella enterica strain PNUSAS359005 SAMN36019121-rid18568503.guided.35, whole genome shotgun sequence	181..1380	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNUKC010000029.1 Salmonella enterica strain PNUSAS359005 SAMN36019121-rid18568503.denovo.32, whole genome shotgun sequence	9107..9666																																																						avrA	ABNUKC010000003.1	95072..95941	99.655	870	0						
GCA_032676855.1_PDT001791886.1_genomic.fna	Salmonella_enterica	0.5208	278.847 KB	6	aroC_18,dnaN_14,hemD_12,hisD_9,purE_5,sucA_18,thrA_21	36	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_14	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_18	thrA	100	100	thrA_21	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUKL010000001.1 Salmonella enterica strain PNUSAS359033 SAMN36019154-rid18568433.denovo.01, whole genome shotgun sequence	287867..288304	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUKL010000033.1 Salmonella enterica strain PNUSAS359033 SAMN36019154-rid18568433.guided.18, whole genome shotgun sequence	29678..30115	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNUKL010000002.1	174490..175359	99.885	870	0						
GCA_032676885.1_PDT001791890.1_genomic.fna	Salmonella_enterica	0.5198	162.827 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNUKG010000010.1 Salmonella enterica strain PNUSAS359010 SAMN36019174-rid18568473.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNUKG010000059.1 Salmonella enterica strain PNUSAS359010 SAMN36019174-rid18568473.guided.28, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032676895.1_PDT001791891.1_genomic.fna	Salmonella_enterica	0.5209	436.64 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUKF010000001.1 Salmonella enterica strain PNUSAS359017 SAMN36019153-rid18568483.denovo.01, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUKF010000026.1 Salmonella enterica strain PNUSAS359017 SAMN36019153-rid18568483.guided.10, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUKF010000003.1	514960..515828	99.195	870	0						
GCA_032676905.1_PDT001791888.1_genomic.fna	Salmonella_enterica	0.5218	227.9 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUKI010000003.1 Salmonella enterica strain PNUSAS359018 SAMN36019172-rid18568453.denovo.03, whole genome shotgun sequence	62306..62743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNUKI010000048.1 Salmonella enterica strain PNUSAS359018 SAMN36019172-rid18568453.guided.16, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032676945.1_PDT001791889.1_genomic.fna	Salmonella_enterica	0.5194	374.542 KB	6	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(pMET),IncN2	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUKH010000001.1 Salmonella enterica strain PNUSAS359028 SAMN36019163-rid18568463.denovo.01, whole genome shotgun sequence	526522..526959	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUKH010000074.1 Salmonella enterica strain PNUSAS359028 SAMN36019163-rid18568463.guided.13, whole genome shotgun sequence	44263..44700	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNUKH010000026.1 Salmonella enterica strain PNUSAS359028 SAMN36019163-rid18568463.denovo.29, whole genome shotgun sequence	5937..6579	enterobacteriales	IncFII(pMET)	90.41	584 / 577	ABNUKH010000023.1 Salmonella enterica strain PNUSAS359028 SAMN36019163-rid18568463.denovo.25, whole genome shotgun sequence	18874..19456		enterobacteriales	IncN2	98.74	477 / 477	ABNUKH010000020.1 Salmonella enterica strain PNUSAS359028 SAMN36019163-rid18568463.denovo.22, whole genome shotgun sequence	24488..24964																																									avrA	ABNUKH010000004.1	135814..136683	99.425	870	0						
GCA_032677045.1_PDT001791887.1_genomic.fna	Salmonella_enterica	0.5212	376.533 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUKJ010000002.1 Salmonella enterica strain PNUSAS359016 SAMN36019171-rid18568443.denovo.02, whole genome shotgun sequence	207379..207816	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUKJ010000035.1 Salmonella enterica strain PNUSAS359016 SAMN36019171-rid18568443.guided.25, whole genome shotgun sequence	17643..18080	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNUKJ010000001.1	452559..453427	100	869	0						
GCA_032677085.1_PDT001791884.1_genomic.fna	Salmonella_enterica	0.5206	357.537 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_19,thrA_1	679	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUKN010000011.1 Salmonella enterica strain PNUSAS359009 SAMN36019162-rid18568413.denovo.11, whole genome shotgun sequence	37880..38317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUKN010000039.1 Salmonella enterica strain PNUSAS359009 SAMN36019162-rid18568413.guided.15, whole genome shotgun sequence	42435..42872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUKN010000009.1	153643..154508	98.966	870	0						
GCA_032677105.1_PDT001791885.1_genomic.fna	Salmonella_enterica	0.5199	250.15 KB	8	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncI2(Delta)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUKK010000003.1 Salmonella enterica strain PNUSAS359024 SAMN36019166-rid18568423.denovo.03, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUKK010000050.1 Salmonella enterica strain PNUSAS359024 SAMN36019166-rid18568423.guided.29, whole genome shotgun sequence	3149..3586	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNUKK010000021.1 Salmonella enterica strain PNUSAS359024 SAMN36019166-rid18568423.denovo.21, whole genome shotgun sequence	2839..3372	enterobacteriales	IncI2(Delta)	98.42	316 / 316	ABNUKK010000022.1 Salmonella enterica strain PNUSAS359024 SAMN36019166-rid18568423.denovo.22, whole genome shotgun sequence	27499..27814																																																avrA	ABNUKK010000013.1	153900..154769	99.655	870	0						
GCA_032677125.1_PDT001791883.1_genomic.fna	Salmonella_enterica	0.5114	270.573 KB	8	aroC_451,dnaN_26,hemD_339,hisD_460,purE_21,sucA_353,thrA_471	2631	48:z52:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_451	dnaN	100	100	dnaN_26	hemD	100	100	hemD_339	hisD	100	100	hisD_460	purE	100	100	purE_21	sucA	100	100	sucA_353	thrA	100	100	thrA_471	48	z52	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:z52:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUKM010000010.1 Salmonella enterica strain PNUSAS359027 SAMN36019160-rid18568403.denovo.10, whole genome shotgun sequence	106161..106598	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNUKM010000046.1 Salmonella enterica strain PNUSAS359027 SAMN36019160-rid18568403.guided.30, whole genome shotgun sequence	10236..10673	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUKM010000005.1	144597..145466	96.552	870	0						
GCA_032677165.1_PDT001791882.1_genomic.fna	Salmonella_enterica	0.52	279.776 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	IncX1,IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUKO010000001.1 Salmonella enterica strain PNUSAS359046 SAMN36019168-rid18568393.denovo.01, whole genome shotgun sequence	581441..581878	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNUKO010000038.1 Salmonella enterica strain PNUSAS359046 SAMN36019168-rid18568393.denovo.41, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(6)-Id	100	837/837	ABNUKO010000040.1 Salmonella enterica strain PNUSAS359046 SAMN36019168-rid18568393.denovo.44, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUKO010000040.1 Salmonella enterica strain PNUSAS359046 SAMN36019168-rid18568393.denovo.44, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNUKO010000049.1 Salmonella enterica strain PNUSAS359046 SAMN36019168-rid18568393.guided.34, whole genome shotgun sequence	3375..3812	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNUKO010000051.1 Salmonella enterica strain PNUSAS359046 SAMN36019168-rid18568393.guided.40, whole genome shotgun sequence	1..816	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(6)-Id	100	837/837	ABNUKO010000052.1 Salmonella enterica strain PNUSAS359046 SAMN36019168-rid18568393.guided.43, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUKO010000052.1 Salmonella enterica strain PNUSAS359046 SAMN36019168-rid18568393.guided.43, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNUKO010000043.1 Salmonella enterica strain PNUSAS359046 SAMN36019168-rid18568393.denovo.49, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNUKO010000055.1 Salmonella enterica strain PNUSAS359046 SAMN36019168-rid18568393.guided.50, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNUKO010000040.1 Salmonella enterica strain PNUSAS359046 SAMN36019168-rid18568393.denovo.44, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNUKO010000052.1 Salmonella enterica strain PNUSAS359046 SAMN36019168-rid18568393.guided.43, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNUKO010000033.1 Salmonella enterica strain PNUSAS359046 SAMN36019168-rid18568393.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNUKO010000050.1 Salmonella enterica strain PNUSAS359046 SAMN36019168-rid18568393.guided.36, whole genome shotgun sequence	1783..2988	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncX1	98.66	374 / 374	ABNUKO010000029.1 Salmonella enterica strain PNUSAS359046 SAMN36019168-rid18568393.denovo.29, whole genome shotgun sequence	6956..7329	enterobacteriales	IncY	99.74	765 / 765	ABNUKO010000031.1 Salmonella enterica strain PNUSAS359046 SAMN36019168-rid18568393.denovo.31, whole genome shotgun sequence	22209..22973																																																avrA	ABNUKO010000002.1	93863..94732	99.885	870	0						
GCA_032677225.1_PDT001791880.1_genomic.fna	Salmonella_enterica	0.5216	647.764 KB	2	aroC_16,dnaN_16,hemD_20,hisD_1044,purE_8,sucA_12,thrA_18	4856	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_1044	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUKQ010000001.1 Salmonella enterica strain PNUSAS359012 SAMN36019152-rid18568373.denovo.01, whole genome shotgun sequence	657589..658026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUKQ010000019.1 Salmonella enterica strain PNUSAS359012 SAMN36019152-rid18568373.guided.07, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUKQ010000002.1	510238..511104	98.966	870	0						
GCA_032677245.1_PDT001791879.1_genomic.fna	Salmonella_enterica	0.5215	699.69 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNUKR010000001.1 Salmonella enterica strain PNUSAS359025 SAMN36019175-rid18568363.denovo.01, whole genome shotgun sequence	596592..597029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNUKR010000017.1 Salmonella enterica strain PNUSAS359025 SAMN36019175-rid18568363.guided.10, whole genome shotgun sequence	21920..22357	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUKR010000002.1	544584..545452	99.425	870	0						
GCA_032677305.1_PDT001791881.1_genomic.fna	Salmonella_enterica	0.5221	211.433 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUKP010000010.1 Salmonella enterica strain PNUSAS359020 SAMN36019157-rid18568383.denovo.10, whole genome shotgun sequence	144280..144717	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNUKP010000046.1 Salmonella enterica strain PNUSAS359020 SAMN36019157-rid18568383.guided.36, whole genome shotgun sequence	8262..8699	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032677345.1_PDT001791878.1_genomic.fna	Salmonella_enterica	0.5212	543.449 KB	4	aroC_75,dnaN_10,hemD_18,hisD_17,purE_25,sucA_2,thrA_22	Unknown	39:i:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_75	dnaN	100	100	dnaN_10	hemD	100	100	hemD_18	hisD	100	100	hisD_17	purE	100	100	purE_25	sucA	100	100	sucA_2	thrA	100	100	thrA_22	39	i	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Cumberland		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUKT010000001.1 Salmonella enterica strain PNUSAS359007 SAMN36019156-rid18568353.denovo.01, whole genome shotgun sequence	137235..137672	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUKT010000029.1 Salmonella enterica strain PNUSAS359007 SAMN36019156-rid18568353.guided.15, whole genome shotgun sequence	42413..42850	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUKT010000003.1	402210..403079	99.77	870	0						
GCA_032677385.1_PDT001791877.1_genomic.fna	Salmonella_enterica	0.5209	430.47 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUKS010000001.1 Salmonella enterica strain PNUSAS359004 SAMN36019149-rid18568343.denovo.01, whole genome shotgun sequence	477459..477896	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUKS010000038.1 Salmonella enterica strain PNUSAS359004 SAMN36019149-rid18568343.guided.17, whole genome shotgun sequence	19543..19980	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUKS010000002.1	504255..505125	99.196	871	0						
GCA_032677465.1_PDT001791875.1_genomic.fna	Salmonella_enterica	0.5215	485.187 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNUKV010000001.1 Salmonella enterica strain PNUSAS359006 SAMN36019159-rid18568323.denovo.01, whole genome shotgun sequence	816893..817330	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNUKV010000027.1 Salmonella enterica strain PNUSAS359006 SAMN36019159-rid18568323.guided.22, whole genome shotgun sequence	1704..2141	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABNUKV010000016.1 Salmonella enterica strain PNUSAS359006 SAMN36019159-rid18568323.denovo.17, whole genome shotgun sequence	14967..15228																																																						avrA	ABNUKV010000002.1	149179..150048	98.966	870	0						
GCA_032677485.1_PDT001791874.1_genomic.fna	Salmonella_enterica	0.5201	416.247 KB	5	aroC_499,dnaN_463,hemD_10,hisD_36,purE_25,sucA_46,thrA_36	2133	4:z29:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_499	dnaN	100	100	dnaN_463	hemD	100	100	hemD_10	hisD	100	100	hisD_36	purE	100	100	purE_25	sucA	100	100	sucA_46	thrA	100	100	thrA_36	4	z29	-	Salmonella enterica subspecies enterica (subspecies I)	Brancaster		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNUKW010000008.1 Salmonella enterica strain PNUSAS359042 SAMN36019165-rid18568313.denovo.08, whole genome shotgun sequence	165919..166356	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNUKW010000036.1 Salmonella enterica strain PNUSAS359042 SAMN36019165-rid18568313.guided.23, whole genome shotgun sequence	9040..9477	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNUKW010000025.1 Salmonella enterica strain PNUSAS359042 SAMN36019165-rid18568313.denovo.29, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNUKW010000037.1 Salmonella enterica strain PNUSAS359042 SAMN36019165-rid18568313.guided.28, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNUKW010000025.1 Salmonella enterica strain PNUSAS359042 SAMN36019165-rid18568313.denovo.29, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNUKW010000037.1 Salmonella enterica strain PNUSAS359042 SAMN36019165-rid18568313.guided.28, whole genome shotgun sequence	2164..2294																																																avrA	ABNUKW010000007.1	185326..186195	99.655	870	0						
GCA_032677505.1_PDT001791876.1_genomic.fna	Salmonella_enterica	0.5227	397.497 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUKU010000001.1 Salmonella enterica strain PNUSAS359026 SAMN36019169-rid18568333.denovo.01, whole genome shotgun sequence	790281..790718	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUKU010000035.1 Salmonella enterica strain PNUSAS359026 SAMN36019169-rid18568333.guided.22, whole genome shotgun sequence	2852..3289	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.6	643 / 643	ABNUKU010000011.1 Salmonella enterica strain PNUSAS359026 SAMN36019169-rid18568333.denovo.11, whole genome shotgun sequence	95951..96593																																																						avrA	ABNUKU010000005.1	93999..94868	98.966	870	0						
GCA_032677525.1_PDT001791873.1_genomic.fna	Salmonella_enterica	0.5219	699.694 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNUKX010000001.1 Salmonella enterica strain PNUSAS359049 SAMN36019115-rid18568303.denovo.01, whole genome shotgun sequence	510744..511181	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNUKX010000020.1 Salmonella enterica strain PNUSAS359049 SAMN36019115-rid18568303.guided.16, whole genome shotgun sequence	5324..5761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUKX010000002.1	544484..545352	99.425	870	0						
GCA_032677605.1_PDT001791872.1_genomic.fna	Salmonella_enterica	0.521	802.025 KB	2	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUKY010000001.1 Salmonella enterica strain PNUSAS359048 SAMN36019107-rid18568293.denovo.01, whole genome shotgun sequence	647863..648300	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUKY010000025.1 Salmonella enterica strain PNUSAS359048 SAMN36019107-rid18568293.guided.17, whole genome shotgun sequence	457..894	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUKY010000002.1	651598..652467	99.425	870	0						
GCA_032677665.1_PDT001791869.1_genomic.fna	Salmonella_enterica	0.5198	695.775 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNULA010000001.1 Salmonella enterica strain PNUSAS359030 SAMN36019118-rid18568263.denovo.01, whole genome shotgun sequence	643149..643586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNULA010000020.1 Salmonella enterica strain PNUSAS359030 SAMN36019118-rid18568263.guided.09, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNULA010000013.1 Salmonella enterica strain PNUSAS359030 SAMN36019118-rid18568263.denovo.16, whole genome shotgun sequence	3864..3994																																																																	
GCA_032677685.1_PDT001791871.1_genomic.fna	Salmonella_enterica	0.5208	412.06 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUKZ010000001.1 Salmonella enterica strain PNUSAS359015 SAMN36019122-rid18568283.denovo.01, whole genome shotgun sequence	383528..383965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUKZ010000043.1 Salmonella enterica strain PNUSAS359015 SAMN36019122-rid18568283.guided.24, whole genome shotgun sequence	2807..3244	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUKZ010000002.1	504311..505181	99.196	871	0						
GCA_032677705.1_PDT001791870.1_genomic.fna	Salmonella_enterica	0.5219	157.168 KB	11	aroC_346,dnaN_4,hemD_8,hisD_125,purE_76,sucA_19,thrA_101	2208	9:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_346	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_125	purE	100	100	purE_76	sucA	100	100	sucA_19	thrA	100	100	thrA_101	9	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Lome		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNULB010000001.1 Salmonella enterica strain PNUSAS359029 SAMN36019106-rid18568273.denovo.01, whole genome shotgun sequence	150011..150448	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNULB010000048.1 Salmonella enterica strain PNUSAS359029 SAMN36019106-rid18568273.guided.28, whole genome shotgun sequence	9999..10436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNULB010000004.1	93973..94842	98.966	870	0						
GCA_032677745.1_PDT001791868.1_genomic.fna	Salmonella_enterica	0.5203	485.962 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNULD010000001.1 Salmonella enterica strain PNUSAS359047 SAMN36019123-rid18568253.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNULD010000046.1 Salmonella enterica strain PNUSAS359047 SAMN36019123-rid18568253.guided.09, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNULD010000003.1	504340..505210	99.196	871	0						
GCA_032677785.1_PDT001791867.1_genomic.fna	Salmonella_enterica	0.5218	233.706 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNULC010000003.1 Salmonella enterica strain PNUSAS359019 SAMN36019117-rid18568993.denovo.03, whole genome shotgun sequence	68191..68628	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNULC010000045.1 Salmonella enterica strain PNUSAS359019 SAMN36019117-rid18568993.guided.23, whole genome shotgun sequence	16439..16876	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032677865.1_PDT001791866.1_genomic.fna	Salmonella_enterica	0.5212	205.997 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNULE010000001.1 Salmonella enterica strain PNUSAS359034 SAMN36019120-rid18568243.denovo.01, whole genome shotgun sequence	326613..327050	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNULE010000045.1 Salmonella enterica strain PNUSAS359034 SAMN36019120-rid18568243.guided.15, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032677885.1_PDT001791864.1_genomic.fna	Salmonella_enterica	0.5216	417.752 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNULG010000001.1 Salmonella enterica strain PNUSAS359031 SAMN36019119-rid18568233.denovo.01, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNULG010000041.1 Salmonella enterica strain PNUSAS359031 SAMN36019119-rid18568233.guided.24, whole genome shotgun sequence	4242..4679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNULG010000012.1	102085..102954	99.655	870	0						
GCA_032677905.1_PDT001791865.1_genomic.fna	Salmonella_enterica	0.5214	341.181 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNULF010000001.1 Salmonella enterica strain PNUSAS359037 SAMN36019151-rid18568983.denovo.01, whole genome shotgun sequence	145192..145629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNULF010000049.1 Salmonella enterica strain PNUSAS359037 SAMN36019151-rid18568983.guided.19, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNULF010000015.1 Salmonella enterica strain PNUSAS359037 SAMN36019151-rid18568983.denovo.15, whole genome shotgun sequence	36049..36691	enterobacteriales	IncFII(S)	100	262 / 262	ABNULF010000015.1 Salmonella enterica strain PNUSAS359037 SAMN36019151-rid18568983.denovo.15, whole genome shotgun sequence	51776..52037																																																avrA	ABNULF010000003.1	400622..401491	99.885	870	0						
GCA_032677965.1_PDT001791863.1_genomic.fna	Salmonella_enterica	0.5209	695.937 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNULH010000001.1 Salmonella enterica strain PNUSAS359021 SAMN36019111-rid18568223.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNULH010000021.1 Salmonella enterica strain PNUSAS359021 SAMN36019111-rid18568223.guided.14, whole genome shotgun sequence	5236..5673	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032677985.1_PDT001791862.1_genomic.fna	Salmonella_enterica	0.5202	502.944 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNULI010000002.1 Salmonella enterica strain PNUSAS359022 SAMN36019108-rid18568213.denovo.02, whole genome shotgun sequence	566414..566851	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNULI010000041.1 Salmonella enterica strain PNUSAS359022 SAMN36019108-rid18568213.guided.12, whole genome shotgun sequence	44263..44700	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNULI010000019.1 Salmonella enterica strain PNUSAS359022 SAMN36019108-rid18568213.denovo.21, whole genome shotgun sequence	7332..7974																																																						avrA	ABNULI010000005.1	149431..150300	99.425	870	0						
GCA_032678065.1_PDT001791861.1_genomic.fna	Salmonella_enterica	0.5202	695.775 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNULJ010000001.1 Salmonella enterica strain PNUSAS359050 SAMN36019113-rid18568203.denovo.01, whole genome shotgun sequence	642699..643136	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNULJ010000021.1 Salmonella enterica strain PNUSAS359050 SAMN36019113-rid18568203.guided.09, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNULJ010000013.1 Salmonella enterica strain PNUSAS359050 SAMN36019113-rid18568203.denovo.16, whole genome shotgun sequence	3864..3994																																																																	
GCA_032678085.1_PDT001791859.1_genomic.fna	Salmonella_enterica	0.5195	234.276 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	13	aac(6')-Iaa,aac(3)-IId,aadA22,aac(6')-Iaa,aac(3)-IId,aadA22,blaTEM-1B,blaLAP-2,blaCTX-M-55,blaCTX-M-55,blaTEM-1B,blaLAP-2,fosA7,fosA7,lnu(F),lnu(F),qnrS13,qnrS13,ARR-2,ARR-2,sul3,sul3,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNULK010000001.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.denovo.01, whole genome shotgun sequence	463959..464396	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNULK010000041.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.denovo.49, whole genome shotgun sequence	263..1123	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNULK010000043.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.denovo.53, whole genome shotgun sequence	936..1727	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	97.95	438/438	ABNULK010000061.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.guided.42, whole genome shotgun sequence	5754..6191	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABNULK010000064.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.guided.48, whole genome shotgun sequence	304..1164	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNULK010000068.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.guided.57, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	blaTEM-1B	100	861/861	ABNULK010000036.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.denovo.40, whole genome shotgun sequence	3509..4369	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNULK010000036.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.denovo.40, whole genome shotgun sequence	6573..7430	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaCTX-M-55	100	876/876	ABNULK010000039.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.denovo.45, whole genome shotgun sequence	492..1367	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaCTX-M-55	100	876/876	ABNULK010000063.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.guided.46, whole genome shotgun sequence	533..1408	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNULK010000065.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.guided.50, whole genome shotgun sequence	2371..3231	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNULK010000066.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.guided.51, whole genome shotgun sequence	2097..2954	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	fosA7	97.16	423/423	ABNULK010000021.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.denovo.21, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNULK010000058.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.guided.33, whole genome shotgun sequence	12319..12741	Fosfomycin	LAPJ01000014	lnu(F)	100	822/822	ABNULK010000043.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.denovo.53, whole genome shotgun sequence	1859..2680	Lincomycin	EU118119	lnu(F)	100	822/822	ABNULK010000068.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.guided.57, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	qnrS13	100	657/657	ABNULK010000038.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.denovo.44, whole genome shotgun sequence	3599..4255	Ciprofloxacin	LUYD01000008	qnrS13	100	657/657	ABNULK010000067.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.guided.56, whole genome shotgun sequence	509..1165	Ciprofloxacin	LUYD01000008	ARR-2	100	453/453	ABNULK010000045.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.denovo.55, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABNULK010000069.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.guided.59, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABNULK010000034.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.denovo.38, whole genome shotgun sequence	5077..5868	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNULK010000060.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.guided.37, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABNULK010000037.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.denovo.41, whole genome shotgun sequence	3128..4327	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNULK010000062.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.guided.43, whole genome shotgun sequence	1075..2274	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNULK010000045.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.denovo.55, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABNULK010000069.1 Salmonella enterica strain PNUSAS358869 SAMN36017717-rid18568183.guided.59, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNULK010000002.1	122301..123170	99.195	870	0						
GCA_032678105.1_PDT001791858.1_genomic.fna	Salmonella_enterica	0.5212	478.48 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNULL010000001.1 Salmonella enterica strain PNUSAS358865 SAMN36017725-rid18568173.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNULL010000029.1 Salmonella enterica strain PNUSAS358865 SAMN36017725-rid18568173.guided.20, whole genome shotgun sequence	10922..11359	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNULL010000022.1 Salmonella enterica strain PNUSAS358865 SAMN36017725-rid18568173.denovo.25, whole genome shotgun sequence	967..1118	enterobacteriales	ColpVC	98.96	193 / 193	ABNULL010000025.1 Salmonella enterica strain PNUSAS358865 SAMN36017725-rid18568173.denovo.28, whole genome shotgun sequence	805..997		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNULL010000018.1 Salmonella enterica strain PNUSAS358865 SAMN36017725-rid18568173.denovo.19, whole genome shotgun sequence	6817..7459		enterobacteriales	IncFII(S)	100	262 / 262	ABNULL010000015.1 Salmonella enterica strain PNUSAS358865 SAMN36017725-rid18568173.denovo.16, whole genome shotgun sequence	5032..5293																																		avrA	ABNULL010000002.1	553678..554547	99.54	870	0						
GCA_032678165.1_PDT001791857.1_genomic.fna	Salmonella_enterica	0.5221	207.445 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNULM010000001.1 Salmonella enterica strain PNUSAS358866 SAMN36017720-rid18568163.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNULM010000039.1 Salmonella enterica strain PNUSAS358866 SAMN36017720-rid18568163.guided.32, whole genome shotgun sequence	3957..4394	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNULM010000002.1	208058..208926	99.77	870	0						
GCA_032678185.1_PDT001791856.1_genomic.fna	Salmonella_enterica	0.5214	375.814 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNULN010000001.1 Salmonella enterica strain PNUSAS358868 SAMN36017723-rid18568153.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNULN010000031.1 Salmonella enterica strain PNUSAS358868 SAMN36017723-rid18568153.guided.26, whole genome shotgun sequence	290..727	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNULN010000022.1 Salmonella enterica strain PNUSAS358868 SAMN36017723-rid18568153.denovo.24, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNULN010000018.1 Salmonella enterica strain PNUSAS358868 SAMN36017723-rid18568153.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABNULN010000002.1	553636..554505	99.54	870	0						
GCA_032678285.1_PDT001791855.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNULO010000001.1 Salmonella enterica strain PNUSAS358867 SAMN36017722-rid18568143.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNULO010000027.1 Salmonella enterica strain PNUSAS358867 SAMN36017722-rid18568143.guided.23, whole genome shotgun sequence	41..478	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNULO010000019.1 Salmonella enterica strain PNUSAS358867 SAMN36017722-rid18568143.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNULO010000015.1 Salmonella enterica strain PNUSAS358867 SAMN36017722-rid18568143.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNULO010000002.1	553425..554294	99.54	870	0						
GCA_032678785.1_PDT001791853.1_genomic.fna	Salmonella_enterica	0.5212	400.645 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNULQ010000001.1 Salmonella enterica strain PNUSAS359106 SAMN36017714-rid18568123.denovo.01, whole genome shotgun sequence	158715..159152	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNULQ010000031.1 Salmonella enterica strain PNUSAS359106 SAMN36017714-rid18568123.guided.21, whole genome shotgun sequence	4065..4502	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNULQ010000020.1 Salmonella enterica strain PNUSAS359106 SAMN36017714-rid18568123.denovo.22, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNULQ010000022.1 Salmonella enterica strain PNUSAS359106 SAMN36017714-rid18568123.denovo.25, whole genome shotgun sequence	3403..3664																																																avrA	ABNULQ010000002.1	585477..586346	99.54	870	0						
GCA_032678805.1_PDT001791854.1_genomic.fna	Salmonella_enterica	0.522	361.677 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNULP010000001.1 Salmonella enterica strain PNUSAS358872 SAMN36017718-rid18568133.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNULP010000035.1 Salmonella enterica strain PNUSAS358872 SAMN36017718-rid18568133.guided.19, whole genome shotgun sequence	11970..12407	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNULP010000024.1 Salmonella enterica strain PNUSAS358872 SAMN36017718-rid18568133.denovo.27, whole genome shotgun sequence	1506..1636	enterobacteriales	IncI1-I(Alpha)	99.29	140 / 142	ABNULP010000015.1 Salmonella enterica strain PNUSAS358872 SAMN36017718-rid18568133.denovo.15, whole genome shotgun sequence	72018..72157																																																avrA	ABNULP010000006.1	147026..147895	98.966	870	0						
GCA_032678825.1_PDT001791851.1_genomic.fna	Salmonella_enterica	0.5229	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNULS010000001.1 Salmonella enterica strain PNUSAS359109 SAMN36017716-rid18568103.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNULS010000028.1 Salmonella enterica strain PNUSAS359109 SAMN36017716-rid18568103.guided.18, whole genome shotgun sequence	34124..34561	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNULS010000003.1	180006..180875	99.655	870	0						
GCA_032678845.1_PDT001791850.1_genomic.fna	Salmonella_enterica	0.5214	412.183 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNULT010000001.1 Salmonella enterica strain PNUSAS358874 SAMN36017719-rid18568093.denovo.01, whole genome shotgun sequence	770002..770439	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNULT010000026.1 Salmonella enterica strain PNUSAS358874 SAMN36017719-rid18568093.guided.22, whole genome shotgun sequence	3349..3786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNULT010000020.1 Salmonella enterica strain PNUSAS358874 SAMN36017719-rid18568093.denovo.21, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNULT010000021.1 Salmonella enterica strain PNUSAS358874 SAMN36017719-rid18568093.denovo.25, whole genome shotgun sequence	3402..3663																																																avrA	ABNULT010000002.1	553636..554505	99.54	870	0						
GCA_032678865.1_PDT001791852.1_genomic.fna	Salmonella_enterica	0.5207	317.381 KB	6	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNULR010000001.1 Salmonella enterica strain PNUSAS358871 SAMN36017713-rid18568113.denovo.01, whole genome shotgun sequence	600471..600908	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNULR010000068.1 Salmonella enterica strain PNUSAS358871 SAMN36017713-rid18568113.guided.33, whole genome shotgun sequence	12616..13053	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNULR010000029.1 Salmonella enterica strain PNUSAS358871 SAMN36017713-rid18568113.denovo.30, whole genome shotgun sequence	11460..12102																																																						avrA	ABNULR010000005.1	93871..94740	99.425	870	0						
GCA_032679205.1_PDT001791833.1_genomic.fna	Salmonella_enterica	0.5221	278.401 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUMK010000002.1 Salmonella enterica strain PNUSAS358963 SAMN35996152-rid18567733.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUMK010000042.1 Salmonella enterica strain PNUSAS358963 SAMN35996152-rid18567733.guided.26, whole genome shotgun sequence	13085..13522	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUMK010000017.1 Salmonella enterica strain PNUSAS358963 SAMN35996152-rid18567733.denovo.17, whole genome shotgun sequence	48445..49087	enterobacteriales	IncFII(S)	100	262 / 262	ABNUMK010000017.1 Salmonella enterica strain PNUSAS358963 SAMN35996152-rid18567733.denovo.17, whole genome shotgun sequence	64172..64433																																																avrA	ABNUMK010000004.1	174651..175519	100	869	0						
GCA_032679225.1_PDT001791830.1_genomic.fna	Salmonella_enterica	0.5209	150.376 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aadA2,aac(6')-Iaa,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,cmlA1,qnrB19,qnrB19,sul2,sul2,tet(M),tet(B),tet(B),tet(M),tet(M),dfrA12,dfrA12	0		3	Col(pHAD28),IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUMP010000001.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.denovo.01, whole genome shotgun sequence	458967..459404	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNUMP010000037.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.denovo.38, whole genome shotgun sequence	7095..7886	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNUMP010000037.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.denovo.38, whole genome shotgun sequence	4690..5481	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNUMP010000052.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.denovo.60, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUMP010000052.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.denovo.60, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aadA2	100	792/792	ABNUMP010000064.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.guided.46, whole genome shotgun sequence	6042..6833	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	100	438/438	ABNUMP010000065.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.guided.48, whole genome shotgun sequence	2987..3424	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNUMP010000069.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.guided.61, whole genome shotgun sequence	539..1330	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNUMP010000072.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.guided.68, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUMP010000072.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.guided.68, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNUMP010000056.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.denovo.67, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNUMP010000073.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.guided.69, whole genome shotgun sequence	289..1149	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABNUMP010000037.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.denovo.38, whole genome shotgun sequence	5574..6833	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNUMP010000068.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.guided.59, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	qnrB19	100	645/645	ABNUMP010000051.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.denovo.58, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNUMP010000071.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.guided.66, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	99.88	816/816	ABNUMP010000070.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.guided.62, whole genome shotgun sequence	1239..2054	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNUMP010000074.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.guided.71, whole genome shotgun sequence	50..865	Sulfamethoxazole	HQ840942	tet(M)	96.15	1920/1920	ABNUMP010000037.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.denovo.38, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNUMP010000039.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.denovo.40, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNUMP010000063.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.guided.45, whole genome shotgun sequence	6568..7773	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.09	1920/1920	ABNUMP010000066.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.guided.54, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABNUMP010000067.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.guided.55, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABNUMP010000037.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.denovo.38, whole genome shotgun sequence	8294..8791	Trimethoprim	AM040708	dfrA12	100	498/498	ABNUMP010000064.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.guided.46, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																													enterobacteriales	Col(pHAD28)	100	131 / 131	ABNUMP010000051.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.denovo.58, whole genome shotgun sequence	1150..1280	enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNUMP010000035.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.denovo.36, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNUMP010000027.1 Salmonella enterica strain PNUSAS359152 SAMN36000503-rid18567913.denovo.27, whole genome shotgun sequence	43874..44370																																									avrA	ABNUMP010000002.1	541197..542066	99.885	870	0						
GCA_032679245.1_PDT001791832.1_genomic.fna	Salmonella_enterica	0.5208	371.193 KB	5	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUML010000007.1 Salmonella enterica strain PNUSAS359160 SAMN36000522-rid18567723.denovo.07, whole genome shotgun sequence	110416..110853	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUML010000036.1 Salmonella enterica strain PNUSAS359160 SAMN36000522-rid18567723.guided.24, whole genome shotgun sequence	8111..8548	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNUML010000026.1 Salmonella enterica strain PNUSAS359160 SAMN36000522-rid18567723.denovo.29, whole genome shotgun sequence	1708..1838	enterobacteriales	Col440I	90.27	113 / 114	ABNUML010000024.1 Salmonella enterica strain PNUSAS359160 SAMN36000522-rid18567723.denovo.27, whole genome shotgun sequence	3345..3457																																																avrA	ABNUML010000002.1	162698..163567	98.966	870	0						
GCA_032679285.1_PDT001791828.1_genomic.fna	Salmonella_enterica	0.5213	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUMO010000001.1 Salmonella enterica strain NMSU_WWDEM27H SAMN36000527-rid18567703.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUMO010000028.1 Salmonella enterica strain NMSU_WWDEM27H SAMN36000527-rid18567703.guided.20, whole genome shotgun sequence	2562..2999	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUMO010000014.1 Salmonella enterica strain NMSU_WWDEM27H SAMN36000527-rid18567703.denovo.15, whole genome shotgun sequence	6136..6778	enterobacteriales	IncFII(S)	100	262 / 262	ABNUMO010000015.1 Salmonella enterica strain NMSU_WWDEM27H SAMN36000527-rid18567703.denovo.16, whole genome shotgun sequence	3328..3589																																																avrA	ABNUMO010000002.1	553636..554505	99.54	870	0						
GCA_032679305.1_PDT001791829.1_genomic.fna	Salmonella_enterica	0.5212	406.866 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUMN010000001.1 Salmonella enterica strain PNUSAS359156 SAMN36000525-rid18567713.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUMN010000026.1 Salmonella enterica strain PNUSAS359156 SAMN36000525-rid18567713.guided.17, whole genome shotgun sequence	9270..9707	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUMN010000018.1 Salmonella enterica strain PNUSAS359156 SAMN36000525-rid18567713.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNUMN010000020.1 Salmonella enterica strain PNUSAS359156 SAMN36000525-rid18567713.denovo.22, whole genome shotgun sequence	3358..3619																																																avrA	ABNUMN010000002.1	553636..554505	99.54	870	0						
GCA_032679325.1_PDT001791826.1_genomic.fna	Salmonella_enterica	0.5202	453.256 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUMR010000001.1 Salmonella enterica strain NMSU_WWLCEM32X SAMN36000537-rid18567903.denovo.01, whole genome shotgun sequence	414575..415012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUMR010000026.1 Salmonella enterica strain NMSU_WWLCEM32X SAMN36000537-rid18567903.guided.20, whole genome shotgun sequence	1423..1860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032679345.1_PDT001791827.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUMQ010000001.1 Salmonella enterica strain NMSU_WWDEM27X SAMN36000528-rid18567693.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUMQ010000036.1 Salmonella enterica strain NMSU_WWDEM27X SAMN36000528-rid18567693.guided.22, whole genome shotgun sequence	1482..1919	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUMQ010000015.1 Salmonella enterica strain NMSU_WWDEM27X SAMN36000528-rid18567693.denovo.16, whole genome shotgun sequence	4932..5574	enterobacteriales	IncFII(S)	100	262 / 262	ABNUMQ010000016.1 Salmonella enterica strain NMSU_WWDEM27X SAMN36000528-rid18567693.denovo.17, whole genome shotgun sequence	368..629																																																avrA	ABNUMQ010000002.1	553636..554505	99.54	870	0						
GCA_032679365.1_PDT001791825.1_genomic.fna	Salmonella_enterica	0.5204	696.427 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUMS010000001.1 Salmonella enterica strain NMSU_WWLCEM33X1 SAMN36000538-rid18567893.denovo.01, whole genome shotgun sequence	414575..415012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUMS010000026.1 Salmonella enterica strain NMSU_WWLCEM33X1 SAMN36000538-rid18567893.guided.20, whole genome shotgun sequence	163..600	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032679385.1_PDT001791823.1_genomic.fna	Salmonella_enterica	0.5201	525.958 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUMU010000001.1 Salmonella enterica strain NMSU_WWLCJH27H SAMN36000540-rid18567673.denovo.01, whole genome shotgun sequence	1359932..1360369	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUMU010000028.1 Salmonella enterica strain NMSU_WWLCJH27H SAMN36000540-rid18567673.guided.20, whole genome shotgun sequence	51..488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNUMU010000010.1 Salmonella enterica strain NMSU_WWLCJH27H SAMN36000540-rid18567673.denovo.10, whole genome shotgun sequence	71718..71859																																																						avrA	ABNUMU010000002.1	512716..513585	99.425	870	0						
GCA_032679405.1_PDT001791824.1_genomic.fna	Salmonella_enterica	0.5219	758.524 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUMT010000001.1 Salmonella enterica strain NMSU_WWLCEM33X2 SAMN36000539-rid18567683.denovo.01, whole genome shotgun sequence	566338..566775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUMT010000033.1 Salmonella enterica strain NMSU_WWLCEM33X2 SAMN36000539-rid18567683.guided.20, whole genome shotgun sequence	123..560	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNUMT010000004.1	553523..554392	99.655	870	0						
GCA_032679425.1_PDT001791820.1_genomic.fna	Salmonella_enterica	0.5221	723.706 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUMX010000001.1 Salmonella enterica strain NMSU_WWLCJH28X SAMN36000543-rid18567873.denovo.01, whole genome shotgun sequence	172127..172564	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUMX010000027.1 Salmonella enterica strain NMSU_WWLCJH28X SAMN36000543-rid18567873.guided.21, whole genome shotgun sequence	2136..2573	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUMX010000003.1	553474..554343	99.77	870	0						
GCA_032679445.1_PDT001791821.1_genomic.fna	Salmonella_enterica	0.5216	723.707 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUMW010000001.1 Salmonella enterica strain NMSU_WWLCJH28H SAMN36000542-rid18567883.denovo.01, whole genome shotgun sequence	172152..172589	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUMW010000029.1 Salmonella enterica strain NMSU_WWLCJH28H SAMN36000542-rid18567883.guided.21, whole genome shotgun sequence	1318..1755	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUMW010000003.1	553474..554343	99.77	870	0						
GCA_032679455.1_PDT001791822.1_genomic.fna	Salmonella_enterica	0.5203	525.888 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUMV010000001.1 Salmonella enterica strain NMSU_WWLCJH27X SAMN36000541-rid18567663.denovo.01, whole genome shotgun sequence	1359770..1360207	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.48	386/438	ABNUMV010000025.1 Salmonella enterica strain NMSU_WWLCJH27X SAMN36000541-rid18567663.guided.21, whole genome shotgun sequence	1..386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.74	386/438	ABNUMV010000026.1 Salmonella enterica strain NMSU_WWLCJH27X SAMN36000541-rid18567663.guided.22, whole genome shotgun sequence	1..386	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNUMV010000011.1 Salmonella enterica strain NMSU_WWLCJH27X SAMN36000541-rid18567663.denovo.11, whole genome shotgun sequence	83325..83466																																																						avrA	ABNUMV010000002.1	512716..513585	99.425	870	0						
GCA_032679485.1_PDT001791819.1_genomic.fna	Salmonella_enterica	0.5218	723.707 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUMZ010000001.1 Salmonella enterica strain NMSU_WWLCJH29H SAMN36000544-rid18567653.denovo.01, whole genome shotgun sequence	615289..615726	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUMZ010000028.1 Salmonella enterica strain NMSU_WWLCJH29H SAMN36000544-rid18567653.guided.22, whole genome shotgun sequence	206..643	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUMZ010000002.1	553474..554343	99.77	870	0						
GCA_032679505.1_PDT001791818.1_genomic.fna	Salmonella_enterica	0.5215	723.707 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUMY010000001.1 Salmonella enterica strain NMSU_WWLCJH29X SAMN36000545-rid18567643.denovo.01, whole genome shotgun sequence	615289..615726	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUMY010000027.1 Salmonella enterica strain NMSU_WWLCJH29X SAMN36000545-rid18567643.guided.18, whole genome shotgun sequence	2483..2920	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUMY010000003.1	553474..554343	99.77	870	0						
GCA_032679525.1_PDT001791817.1_genomic.fna	Salmonella_enterica	0.5219	758.524 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUNA010000001.1 Salmonella enterica strain NMSU_WWLCJH30H SAMN36000546-rid18567633.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUNA010000028.1 Salmonella enterica strain NMSU_WWLCJH30H SAMN36000546-rid18567633.guided.22, whole genome shotgun sequence	1878..2315	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNUNA010000004.1	553523..554392	99.655	870	0						
GCA_032679545.1_PDT001791815.1_genomic.fna	Salmonella_enterica	0.5221	439.656 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUNC010000003.1 Salmonella enterica strain NMSU_WWLCJH30X SAMN36000547-rid18567853.denovo.03, whole genome shotgun sequence	144792..145229	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUNC010000033.1 Salmonella enterica strain NMSU_WWLCJH30X SAMN36000547-rid18567853.guided.29, whole genome shotgun sequence	554..991	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNUNC010000002.1	553523..554392	99.655	870	0						
GCA_032679565.1_PDT001791816.1_genomic.fna	Salmonella_enterica	0.5206	508.277 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,ColpVC	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUNB010000001.1 Salmonella enterica strain NMSU_WWDEM28H SAMN36000529-rid18567863.denovo.01, whole genome shotgun sequence	777326..777763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUNB010000027.1 Salmonella enterica strain NMSU_WWDEM28H SAMN36000529-rid18567863.guided.22, whole genome shotgun sequence	1063..1500	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.74	114 / 114	ABNUNB010000018.1 Salmonella enterica strain NMSU_WWDEM28H SAMN36000529-rid18567863.denovo.20, whole genome shotgun sequence	288..401	enterobacteriales	ColpVC	98.96	193 / 193	ABNUNB010000019.1 Salmonella enterica strain NMSU_WWDEM28H SAMN36000529-rid18567863.denovo.21, whole genome shotgun sequence	805..997																																																avrA	ABNUNB010000008.1	139987..140856	99.425	870	0						
GCA_032679585.1_PDT001791806.1_genomic.fna	Salmonella_enterica	0.5217	372.972 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNUNL010000001.1 Salmonella enterica strain NMSU_W230522-1 SAMN36000556-rid18567803.denovo.01, whole genome shotgun sequence	477406..477843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUNL010000010.1	175905..176773	99.195	870	0						
GCA_032679605.1_PDT001791805.1_genomic.fna	Salmonella_enterica	0.5209	573.249 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,ColpVC	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUNM010000001.1 Salmonella enterica strain NMSU_WWDEM28X SAMN36000530-rid18567583.denovo.01, whole genome shotgun sequence	777326..777763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUNM010000025.1 Salmonella enterica strain NMSU_WWDEM28X SAMN36000530-rid18567583.guided.19, whole genome shotgun sequence	1730..2167	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.74	114 / 114	ABNUNM010000016.1 Salmonella enterica strain NMSU_WWDEM28X SAMN36000530-rid18567583.denovo.20, whole genome shotgun sequence	288..401	enterobacteriales	ColpVC	98.96	193 / 193	ABNUNM010000017.1 Salmonella enterica strain NMSU_WWDEM28X SAMN36000530-rid18567583.denovo.21, whole genome shotgun sequence	805..997																																																avrA	ABNUNM010000002.1	559664..560533	99.425	870	0						
GCA_032679625.1_PDT001791804.1_genomic.fna	Salmonella_enterica	0.5197	406.132 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNUNN010000001.1 Salmonella enterica strain NMSU_W230522-2 SAMN36000557-rid18567793.denovo.01, whole genome shotgun sequence	566328..566765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNUNN010000044.1 Salmonella enterica strain NMSU_W230522-2 SAMN36000557-rid18567793.guided.14, whole genome shotgun sequence	5615..6052	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUNN010000007.1	95543..96411	99.425	870	0						
GCA_032679645.1_PDT001791803.1_genomic.fna	Salmonella_enterica	0.5217	208.397 KB	7	aroC_2,dnaN_31,hemD_10,hisD_62,purE_601,sucA_19,thrA_34	2947	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_601	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUNP010000006.1 Salmonella enterica strain NMSU_W230522-3 SAMN36000558-rid18567573.denovo.06, whole genome shotgun sequence	78542..78979	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNUNP010000055.1 Salmonella enterica strain NMSU_W230522-3 SAMN36000558-rid18567573.guided.39, whole genome shotgun sequence	1892..2329	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUNP010000001.1	179403..180271	99.54	870	0						
GCA_032679665.1_PDT001791811.1_genomic.fna	Salmonella_enterica	0.5204	259.332 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNUNH010000001.1 Salmonella enterica strain NMSU_WWLCJH33X SAMN36000551-rid18567833.denovo.01, whole genome shotgun sequence	576919..577356	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNUNH010000054.1 Salmonella enterica strain NMSU_WWLCJH33X SAMN36000551-rid18567833.guided.38, whole genome shotgun sequence	1029..1466	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUNH010000009.1	175893..176761	99.195	870	0						
GCA_032679685.1_PDT001791814.1_genomic.fna	Salmonella_enterica	0.5218	758.524 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUND010000001.1 Salmonella enterica strain NMSU_WWLCJH31X1 SAMN36000548-rid18567843.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUND010000026.1 Salmonella enterica strain NMSU_WWLCJH31X1 SAMN36000548-rid18567843.guided.17, whole genome shotgun sequence	4427..4864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNUND010000004.1	553517..554386	99.655	870	0						
GCA_032679705.1_PDT001791810.1_genomic.fna	Salmonella_enterica	0.5206	441.335 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUNG010000001.1 Salmonella enterica strain NMSU_W230521-1 SAMN36000552-rid18567823.denovo.01, whole genome shotgun sequence	561490..561927	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUNG010000030.1 Salmonella enterica strain NMSU_W230521-1 SAMN36000552-rid18567823.guided.23, whole genome shotgun sequence	131..568	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUNG010000010.1	140193..141061	99.195	870	0						
GCA_032679725.1_PDT001791813.1_genomic.fna	Salmonella_enterica	0.5216	627.479 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	4	aac(6')-Iaa,aac(3)-VIa,aadA1,aadA1,aac(6')-Iaa,aac(3)-VIa,sul1,sul1	1	parC_p.T57S	3	Col(pHAD28),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUNE010000001.1 Salmonella enterica strain NMSU_WWLCJH31X2 SAMN36000549-rid18567623.denovo.01, whole genome shotgun sequence	170129..170566	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNUNE010000012.1 Salmonella enterica strain NMSU_WWLCJH31X2 SAMN36000549-rid18567623.denovo.12, whole genome shotgun sequence	102830..103732	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNUNE010000012.1 Salmonella enterica strain NMSU_WWLCJH31X2 SAMN36000549-rid18567623.denovo.12, whole genome shotgun sequence	101875..102666	Spectinomycin, Streptomycin	JQ414041	aadA1	100	792/792	ABNUNE010000034.1 Salmonella enterica strain NMSU_WWLCJH31X2 SAMN36000549-rid18567623.guided.26, whole genome shotgun sequence	1678..2469	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.95	438/438	ABNUNE010000036.1 Salmonella enterica strain NMSU_WWLCJH31X2 SAMN36000549-rid18567623.guided.29, whole genome shotgun sequence	313..750	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNUNE010000037.1 Salmonella enterica strain NMSU_WWLCJH31X2 SAMN36000549-rid18567623.guided.31, whole genome shotgun sequence	37..939	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	sul1	100	840/840	ABNUNE010000012.1 Salmonella enterica strain NMSU_WWLCJH31X2 SAMN36000549-rid18567623.denovo.12, whole genome shotgun sequence	2076..2915	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUNE010000035.1 Salmonella enterica strain NMSU_WWLCJH31X2 SAMN36000549-rid18567623.guided.28, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNUNE010000024.1 Salmonella enterica strain NMSU_WWLCJH31X2 SAMN36000549-rid18567623.denovo.27, whole genome shotgun sequence	547..675	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNUNE010000012.1 Salmonella enterica strain NMSU_WWLCJH31X2 SAMN36000549-rid18567623.denovo.12, whole genome shotgun sequence	12437..12578		enterobacteriales	IncX1	98.94	377 / 377	ABNUNE010000016.1 Salmonella enterica strain NMSU_WWLCJH31X2 SAMN36000549-rid18567623.denovo.16, whole genome shotgun sequence	14506..14882																																																				
GCA_032679745.1_PDT001791812.1_genomic.fna	Salmonella_enterica	0.5206	282.346 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUNF010000001.1 Salmonella enterica strain NMSU_WWLCJH32H SAMN36000550-rid18567613.denovo.01, whole genome shotgun sequence	570065..570502	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUNF010000037.1 Salmonella enterica strain NMSU_WWLCJH32H SAMN36000550-rid18567613.denovo.40, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUNF010000037.1 Salmonella enterica strain NMSU_WWLCJH32H SAMN36000550-rid18567613.denovo.40, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNUNF010000064.1 Salmonella enterica strain NMSU_WWLCJH32H SAMN36000550-rid18567613.guided.39, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUNF010000064.1 Salmonella enterica strain NMSU_WWLCJH32H SAMN36000550-rid18567613.guided.39, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNUNF010000067.1 Salmonella enterica strain NMSU_WWLCJH32H SAMN36000550-rid18567613.guided.56, whole genome shotgun sequence	296..733	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNUNF010000047.1 Salmonella enterica strain NMSU_WWLCJH32H SAMN36000550-rid18567613.denovo.52, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNUNF010000066.1 Salmonella enterica strain NMSU_WWLCJH32H SAMN36000550-rid18567613.guided.51, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNUNF010000037.1 Salmonella enterica strain NMSU_WWLCJH32H SAMN36000550-rid18567613.denovo.40, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNUNF010000064.1 Salmonella enterica strain NMSU_WWLCJH32H SAMN36000550-rid18567613.guided.39, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNUNF010000026.1 Salmonella enterica strain NMSU_WWLCJH32H SAMN36000550-rid18567613.denovo.27, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNUNF010000065.1 Salmonella enterica strain NMSU_WWLCJH32H SAMN36000550-rid18567613.guided.42, whole genome shotgun sequence	2506..3711	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncY	99.87	765 / 765	ABNUNF010000027.1 Salmonella enterica strain NMSU_WWLCJH32H SAMN36000550-rid18567613.denovo.28, whole genome shotgun sequence	7280..8044																																																						avrA	ABNUNF010000002.1	540750..541619	99.885	870	0						
GCA_032679765.1_PDT001791808.1_genomic.fna	Salmonella_enterica	0.5203	318.5 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNUNJ010000001.1 Salmonella enterica strain NMSU_W230521-3 SAMN36000554-rid18567603.denovo.01, whole genome shotgun sequence	477429..477866	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNUNJ010000035.1 Salmonella enterica strain NMSU_W230521-3 SAMN36000554-rid18567603.guided.27, whole genome shotgun sequence	3160..3597	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUNJ010000010.1	175905..176773	99.195	870	0						
GCA_032679785.1_PDT001791809.1_genomic.fna	Salmonella_enterica	0.5212	307.448 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUNI010000007.1 Salmonella enterica strain NMSU_W230521-2 SAMN36000553-rid18567813.denovo.07, whole genome shotgun sequence	170669..171106	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUNI010000038.1 Salmonella enterica strain NMSU_W230521-2 SAMN36000553-rid18567813.guided.30, whole genome shotgun sequence	88..525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUNI010000003.1	360403..361272	99.425	870	0						
GCA_032679805.1_PDT001791807.1_genomic.fna	Salmonella_enterica	0.5214	430.064 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUNK010000001.1 Salmonella enterica strain NMSU_W230521-4 SAMN36000555-rid18567593.denovo.01, whole genome shotgun sequence	561993..562430	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUNK010000032.1 Salmonella enterica strain NMSU_W230521-4 SAMN36000555-rid18567593.guided.27, whole genome shotgun sequence	168..605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUNK010000010.1	173437..174305	99.195	870	0						
GCA_032679825.1_PDT001791801.1_genomic.fna	Salmonella_enterica	0.5222	728.863 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUNQ010000001.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.denovo.01, whole genome shotgun sequence	638994..639431	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNUNQ010000020.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.denovo.22, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNUNQ010000036.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.guided.26, whole genome shotgun sequence	2259..2696	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNUNQ010000038.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.guided.29, whole genome shotgun sequence	1073..1852	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNUNQ010000020.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.denovo.22, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNUNQ010000038.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.guided.29, whole genome shotgun sequence	77..943	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNUNQ010000018.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.denovo.20, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNUNQ010000037.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.guided.27, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNUNQ010000017.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.denovo.19, whole genome shotgun sequence	5394..6607	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNUNQ010000034.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.guided.24, whole genome shotgun sequence	1740..2953	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNUNQ010000035.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.guided.25, whole genome shotgun sequence	1740..2953	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNUNQ010000020.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.denovo.22, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNUNQ010000039.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.guided.30, whole genome shotgun sequence	827..1483	Ciprofloxacin	AY070235	sul1	100	840/840	ABNUNQ010000017.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.denovo.19, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUNQ010000041.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.guided.33, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNUNQ010000017.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.denovo.19, whole genome shotgun sequence	3519..4793	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNUNQ010000040.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.guided.32, whole genome shotgun sequence	70..1344	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNUNQ010000017.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.denovo.19, whole genome shotgun sequence	1888..2361	Trimethoprim	X00926	dfrA1	100	474/474	ABNUNQ010000042.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.guided.36, whole genome shotgun sequence	413..886	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNUNQ010000015.1 Salmonella enterica strain NMSU_WWDEM33H SAMN36000532-rid18567783.denovo.17, whole genome shotgun sequence	8483..8733																																																						avrA	ABNUNQ010000003.1	553473..554342	99.77	870	0						
GCA_032679845.1_PDT001791802.1_genomic.fna	Salmonella_enterica	0.5219	758.524 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUNO010000001.1 Salmonella enterica strain NMSU_WWDEM31H SAMN36000531-rid18567563.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUNO010000026.1 Salmonella enterica strain NMSU_WWDEM31H SAMN36000531-rid18567563.guided.20, whole genome shotgun sequence	725..1162	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNUNO010000004.1	553523..554392	99.655	870	0						
GCA_032679865.1_PDT001791800.1_genomic.fna	Salmonella_enterica	0.5221	723.706 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,aadA2b,blaCARB-2,blaCARB-2,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUNR010000001.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.denovo.01, whole genome shotgun sequence	172127..172564	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNUNR010000016.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.denovo.17, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNUNR010000036.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.guided.25, whole genome shotgun sequence	2385..2822	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNUNR010000041.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.guided.33, whole genome shotgun sequence	873..1652	Spectinomycin, Streptomycin	D43625	aadA2b	99.74	780/780	ABNUNR010000042.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.guided.34, whole genome shotgun sequence	873..1652	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNUNR010000016.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.denovo.17, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	743/867	ABNUNR010000041.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.guided.33, whole genome shotgun sequence	1..743	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	743/867	ABNUNR010000042.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.guided.34, whole genome shotgun sequence	1..743	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNUNR010000045.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.guided.38, whole genome shotgun sequence	11..877	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNUNR010000020.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.denovo.22, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNUNR010000038.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.guided.30, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNUNR010000019.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.denovo.21, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNUNR010000040.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.guided.32, whole genome shotgun sequence	505..1718	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNUNR010000016.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.denovo.17, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNUNR010000043.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.guided.35, whole genome shotgun sequence	463..1119	Ciprofloxacin	AY070235	sul1	100	840/840	ABNUNR010000016.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.denovo.17, whole genome shotgun sequence	5021..5860	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUNR010000037.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.guided.27, whole genome shotgun sequence	422..1261	Sulfamethoxazole	U12338	tet(A)	100	1240/1275	ABNUNR010000016.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.denovo.17, whole genome shotgun sequence	8536..9775	Doxycycline, Tetracycline	AF534183	tet(A)	100	1257/1275	ABNUNR010000044.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.guided.37, whole genome shotgun sequence	1..1257	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNUNR010000016.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.denovo.17, whole genome shotgun sequence	6905..7378	Trimethoprim	X00926	dfrA1	100	474/474	ABNUNR010000039.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.guided.31, whole genome shotgun sequence	1175..1648	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNUNR010000022.1 Salmonella enterica strain NMSU_WWDEM33X SAMN36000533-rid18567773.denovo.24, whole genome shotgun sequence	590..840																																																						avrA	ABNUNR010000003.1	553472..554341	99.77	870	0						
GCA_032679885.1_PDT001791799.1_genomic.fna	Salmonella_enterica	0.5219	758.524 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUNS010000001.1 Salmonella enterica strain NMSU_WWLCEM29H SAMN36000534-rid18567763.denovo.01, whole genome shotgun sequence	566154..566591	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUNS010000028.1 Salmonella enterica strain NMSU_WWLCEM29H SAMN36000534-rid18567763.guided.24, whole genome shotgun sequence	72..509	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNUNS010000004.1	553517..554386	99.655	870	0						
GCA_032679905.1_PDT001791798.1_genomic.fna	Salmonella_enterica	0.5221	758.524 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUNU010000001.1 Salmonella enterica strain NMSU_WWLCEM29X SAMN36000535-rid18567553.denovo.01, whole genome shotgun sequence	481972..482409	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUNU010000026.1 Salmonella enterica strain NMSU_WWLCEM29X SAMN36000535-rid18567553.guided.19, whole genome shotgun sequence	456..893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNUNU010000004.1	553523..554392	99.655	870	0						
GCA_032679925.1_PDT001791797.1_genomic.fna	Salmonella_enterica	0.5204	696.427 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUNV010000001.1 Salmonella enterica strain NMSU_WWLCEM32H SAMN36000536-rid18567543.denovo.01, whole genome shotgun sequence	414575..415012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUNV010000026.1 Salmonella enterica strain NMSU_WWLCEM32H SAMN36000536-rid18567543.guided.19, whole genome shotgun sequence	429..866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032679965.1_PDT001791795.1_genomic.fna	Salmonella_enterica	0.5148	201.289 KB	9	aroC_33,dnaN_173,hemD_30,hisD_26,purE_141,sucA_275,thrA_28	1256	48:i:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_173	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_141	sucA	100	100	sucA_275	thrA	100	100	thrA_28	48	i	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:i:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUNW010000018.1 Salmonella enterica strain PNUSAS359159 SAMN36000517-rid18567533.denovo.18, whole genome shotgun sequence	76777..77214	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNUNW010000075.1 Salmonella enterica strain PNUSAS359159 SAMN36000517-rid18567533.guided.41, whole genome shotgun sequence	6855..7292	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUNW010000005.1	154953..155822	96.667	870	0						
GCA_032680005.1_PDT001791793.1_genomic.fna	Salmonella_enterica	0.5214	490.04 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUNY010000001.1 Salmonella enterica strain PNUSAS359155 SAMN36000520-rid18567523.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUNY010000021.1 Salmonella enterica strain PNUSAS359155 SAMN36000520-rid18567523.guided.16, whole genome shotgun sequence	8847..9284	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUNY010000016.1 Salmonella enterica strain PNUSAS359155 SAMN36000520-rid18567523.denovo.18, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNUNY010000013.1 Salmonella enterica strain PNUSAS359155 SAMN36000520-rid18567523.denovo.13, whole genome shotgun sequence	3704..3965																																																avrA	ABNUNY010000002.1	505461..506330	99.54	870	0						
GCA_032680065.1_PDT001791790.1_genomic.fna	Salmonella_enterica	0.5209	74.986 KB	18	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUOB010000052.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322981 SAMN36000506-rid18567043.denovo.052, whole genome shotgun sequence	14147..14584	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUOB010000107.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322981 SAMN36000506-rid18567043.guided.065, whole genome shotgun sequence	14178..14615	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNUOB010000006.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322981 SAMN36000506-rid18567043.denovo.006, whole genome shotgun sequence	17986..18408	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNUOB010000109.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322981 SAMN36000506-rid18567043.guided.078, whole genome shotgun sequence	6430..6852	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUOB010000016.1	43651..44520	99.195	870	0						
GCA_032680085.1_PDT001791789.1_genomic.fna	Salmonella_enterica	0.5193	110.761 KB	13	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUOC010000010.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322952 SAMN36000577-rid18567493.denovo.10, whole genome shotgun sequence	84420..84857	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUOC010000063.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322952 SAMN36000577-rid18567493.denovo.65, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUOC010000063.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322952 SAMN36000577-rid18567493.denovo.65, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNUOC010000087.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322952 SAMN36000577-rid18567493.guided.66, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUOC010000089.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322952 SAMN36000577-rid18567493.guided.72, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUOC010000089.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322952 SAMN36000577-rid18567493.guided.72, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNUOC010000067.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322952 SAMN36000577-rid18567493.denovo.71, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNUOC010000088.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322952 SAMN36000577-rid18567493.guided.70, whole genome shotgun sequence	4114..5319	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNUOC010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322952 SAMN36000577-rid18567493.denovo.53, whole genome shotgun sequence	2140..2821	enterobacteriales	IncFII	96.95	262 / 261	ABNUOC010000063.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322952 SAMN36000577-rid18567493.denovo.65, whole genome shotgun sequence	5800..6061		enterobacteriales	IncFII	96.95	262 / 261	ABNUOC010000089.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322952 SAMN36000577-rid18567493.guided.72, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNUOC010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322952 SAMN36000577-rid18567493.denovo.68, whole genome shotgun sequence	1928..2069		enterobacteriales	IncX1	100	373 / 373	ABNUOC010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322952 SAMN36000577-rid18567493.denovo.60, whole genome shotgun sequence	2153..2525																											avrA	ABNUOC010000026.1	39600..40469	99.655	870	0						
GCA_032680105.1_PDT001791788.1_genomic.fna	Salmonella_enterica	0.522	61.975 KB	23	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUOD010000057.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322982 SAMN36000509-rid18567483.denovo.058, whole genome shotgun sequence	12553..12990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUOD010000138.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322982 SAMN36000509-rid18567483.guided.068, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNUOD010000027.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322982 SAMN36000509-rid18567483.denovo.027, whole genome shotgun sequence	21681..22496	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNUOD010000137.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322982 SAMN36000509-rid18567483.guided.056, whole genome shotgun sequence	19651..20466	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNUOD010000027.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322982 SAMN36000509-rid18567483.denovo.027, whole genome shotgun sequence	24673..25872	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUOD010000137.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322982 SAMN36000509-rid18567483.guided.056, whole genome shotgun sequence	22643..23842	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNUOD010000107.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322982 SAMN36000509-rid18567483.denovo.111, whole genome shotgun sequence	371..501																																																						avrA	ABNUOD010000006.1	107917..108786	99.885	870	0						
GCA_032680125.1_PDT001791777.1_genomic.fna	Salmonella_enterica	0.5211	489.16 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUOF010000001.1 Salmonella enterica strain PNUSAS359157 SAMN36000526-rid18567393.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUOF010000021.1 Salmonella enterica strain PNUSAS359157 SAMN36000526-rid18567393.guided.15, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUOF010000012.1 Salmonella enterica strain PNUSAS359157 SAMN36000526-rid18567393.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNUOF010000015.1 Salmonella enterica strain PNUSAS359157 SAMN36000526-rid18567393.denovo.18, whole genome shotgun sequence	3395..3656																																																avrA	ABNUOF010000002.1	553636..554505	99.54	870	0						
GCA_032680165.1_PDT001791776.1_genomic.fna	Salmonella_enterica	0.5189	315.922 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUOG010000001.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322949 SAMN36000571-rid18567383.denovo.01, whole genome shotgun sequence	486112..486549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUOG010000035.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322949 SAMN36000571-rid18567383.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNUOG010000005.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322949 SAMN36000571-rid18567383.denovo.05, whole genome shotgun sequence	17991..18413	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNUOG010000036.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322949 SAMN36000571-rid18567383.guided.29, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUOG010000002.1	173879..174748	99.195	870	0						
GCA_032680185.1_PDT001791774.1_genomic.fna	Salmonella_enterica	0.5214	492.691 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	4	aac(6')-Iaa,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),ColRNAI,IncQ1,IncQ1	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNUOH010000001.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322948 SAMN36000570-rid18567373.denovo.01, whole genome shotgun sequence	779673..780110	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	671/804	ABNUOH010000020.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322948 SAMN36000570-rid18567373.denovo.24, whole genome shotgun sequence	8803..9473	Streptomycin	AF321551	aac(6')-Iaa	98.17	438/438	ABNUOH010000030.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322948 SAMN36000570-rid18567373.guided.21, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	695/804	ABNUOH010000032.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322948 SAMN36000570-rid18567373.guided.23, whole genome shotgun sequence	3985..4679	Streptomycin	AF321551	sul2	100	816/816	ABNUOH010000020.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322948 SAMN36000570-rid18567373.denovo.24, whole genome shotgun sequence	85..900	Sulfamethoxazole	FN995456	sul2	100	816/816	ABNUOH010000032.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322948 SAMN36000570-rid18567373.guided.23, whole genome shotgun sequence	3109..3924	Sulfamethoxazole	FN995456	tet(A)	99.92	1200/1200	ABNUOH010000020.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322948 SAMN36000570-rid18567373.denovo.24, whole genome shotgun sequence	6703..7902	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNUOH010000032.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322948 SAMN36000570-rid18567373.guided.23, whole genome shotgun sequence	5580..6779	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNUOH010000021.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322948 SAMN36000570-rid18567373.denovo.25, whole genome shotgun sequence	239..369	enterobacteriales	ColRNAI	90.08	131 / 130	ABNUOH010000024.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322948 SAMN36000570-rid18567373.denovo.28, whole genome shotgun sequence	3981..4111		enterobacteriales	IncQ1	100	796 / 796	ABNUOH010000020.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322948 SAMN36000570-rid18567373.denovo.24, whole genome shotgun sequence	2240..3035		enterobacteriales	IncQ1	100	796 / 796	ABNUOH010000032.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322948 SAMN36000570-rid18567373.guided.23, whole genome shotgun sequence	974..1769																																		avrA	ABNUOH010000005.1	140114..140983	99.425	870	0						
GCA_032680245.1_PDT001791772.1_genomic.fna	Salmonella_enterica	0.5224	142.054 KB	13	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNUOJ010000004.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322955 SAMN36000580-rid18567353.denovo.04, whole genome shotgun sequence	202631..203068	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNUOJ010000066.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322955 SAMN36000580-rid18567353.guided.48, whole genome shotgun sequence	8828..9265	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNUOJ010000057.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322955 SAMN36000580-rid18567353.denovo.60, whole genome shotgun sequence	1945..2075	enterobacteriales	Col440I	91.74	109 / 114	ABNUOJ010000055.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322955 SAMN36000580-rid18567353.denovo.58, whole genome shotgun sequence	2246..2354		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNUOJ010000031.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322955 SAMN36000580-rid18567353.denovo.31, whole genome shotgun sequence	8691..8832																																																				
GCA_032680325.1_PDT001791764.1_genomic.fna	Salmonella_enterica	0.5209	438.302 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNUOR010000001.1 Salmonella enterica strain PNUSAS359163 SAMN36000518-rid18567293.denovo.01, whole genome shotgun sequence	684204..684641	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNUOR010000024.1 Salmonella enterica strain PNUSAS359163 SAMN36000518-rid18567293.guided.19, whole genome shotgun sequence	10021..10458	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNUOR010000014.1 Salmonella enterica strain PNUSAS359163 SAMN36000518-rid18567293.denovo.14, whole genome shotgun sequence	34957..35490																																																						avrA	ABNUOR010000002.1	563748..564617	99.77	870	0						
GCA_032680365.1_PDT001791766.1_genomic.fna	Salmonella_enterica	0.5194	190.729 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	13	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aph(3')-Ia,blaCMY-2,blaCMY-2,fosA7,fosA7,floR,floR,qnrB19,qnrB19,sul2,sul2,tet(A),tet(A),bleO,bleO	1	parC_p.T57S	2	Col(pHAD28),IncC	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUOP010000001.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.denovo.01, whole genome shotgun sequence	486126..486563	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	99.9	1026/1026	ABNUOP010000024.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.denovo.24, whole genome shotgun sequence	52813..53838	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNUOP010000024.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.denovo.24, whole genome shotgun sequence	54067..54843	Gentamicin, Tobramycin	DQ241380	aph(6)-Id	100	837/837	ABNUOP010000027.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.denovo.27, whole genome shotgun sequence	316..1152	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUOP010000027.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.denovo.27, whole genome shotgun sequence	1152..1955	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNUOP010000061.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.guided.28, whole genome shotgun sequence	66..902	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUOP010000061.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.guided.28, whole genome shotgun sequence	902..1705	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNUOP010000062.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.guided.31, whole genome shotgun sequence	19878..20315	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	99.9	1026/1026	ABNUOP010000066.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.guided.54, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNUOP010000066.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.guided.54, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNUOP010000071.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.guided.65, whole genome shotgun sequence	67..882	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	aph(3')-Ia	99.75	816/816	ABNUOP010000072.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.guided.66, whole genome shotgun sequence	67..882	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU855787	blaCMY-2	100	1146/1146	ABNUOP010000027.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.denovo.27, whole genome shotgun sequence	31172..32317	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNUOP010000061.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.guided.28, whole genome shotgun sequence	30922..32067	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	fosA7	97.16	423/423	ABNUOP010000007.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.denovo.07, whole genome shotgun sequence	17993..18415	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNUOP010000064.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.guided.42, whole genome shotgun sequence	16565..16987	Fosfomycin	LAPJ01000014	floR	98.27	1214/1215	ABNUOP010000045.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.denovo.50, whole genome shotgun sequence	2704..3917	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNUOP010000067.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.guided.58, whole genome shotgun sequence	533..1746	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNUOP010000050.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.denovo.56, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNUOP010000070.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.guided.64, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABNUOP010000027.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.denovo.27, whole genome shotgun sequence	2016..2831	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNUOP010000061.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.guided.28, whole genome shotgun sequence	1766..2581	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNUOP010000045.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.denovo.50, whole genome shotgun sequence	829..2103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNUOP010000068.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.guided.59, whole genome shotgun sequence	775..2049	Doxycycline, Tetracycline	AF534183	bleO	100	392/399	ABNUOP010000053.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.denovo.62, whole genome shotgun sequence	143..534	Bleomycin	AF051917	bleO	100	392/399	ABNUOP010000069.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.guided.61, whole genome shotgun sequence	122..513	Bleomycin	AF051917																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNUOP010000050.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.denovo.56, whole genome shotgun sequence	1522..1652	enterobacteriales	IncC	100	417 / 417	ABNUOP010000025.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322950 SAMN36000575-rid18567303.denovo.25, whole genome shotgun sequence	17605..18021																																																avrA	ABNUOP010000002.1	122302..123171	99.195	870	0						
GCA_032680385.1_PDT001791763.1_genomic.fna	Salmonella_enterica	0.5209	232.457 KB	7	aroC_230,dnaN_38,hemD_158,hisD_416,purE_236,sucA_340,thrA_209	Unknown	42:z36:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(S)	aroC	100	100	aroC_230	dnaN	100	100	dnaN_38	hemD	100	100	hemD_158	hisD	100	100	hisD_416	purE	100	100	purE_236	sucA	100	100	sucA_340	thrA	100	100	thrA_209	42	z36	-	Salmonella enterica subspecies enterica (subspecies I)	Weslaco		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNUOS010000001.1 Salmonella enterica strain PNUSAS359161 SAMN36000515-rid18567283.denovo.01, whole genome shotgun sequence	518922..519359	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNUOS010000041.1 Salmonella enterica strain PNUSAS359161 SAMN36000515-rid18567283.guided.32, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.07	643 / 643	ABNUOS010000016.1 Salmonella enterica strain PNUSAS359161 SAMN36000515-rid18567283.denovo.16, whole genome shotgun sequence	4101..4743	enterobacteriales	IncFII(S)	95.79	261 / 262	ABNUOS010000016.1 Salmonella enterica strain PNUSAS359161 SAMN36000515-rid18567283.denovo.16, whole genome shotgun sequence	62934..63192																																																											
GCA_032680405.1_PDT001791765.1_genomic.fna	Salmonella_enterica	0.5213	165.383 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUOQ010000001.1 Salmonella enterica strain 23NM06CG01-S1 isolate PNUSAS359149 SAMN36000508-rid18566993.denovo.01, whole genome shotgun sequence	451719..452156	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUOQ010000039.1 Salmonella enterica strain 23NM06CG01-S1 isolate PNUSAS359149 SAMN36000508-rid18566993.denovo.44, whole genome shotgun sequence	12831..13622	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUOQ010000039.1 Salmonella enterica strain 23NM06CG01-S1 isolate PNUSAS359149 SAMN36000508-rid18566993.denovo.44, whole genome shotgun sequence	12831..13622	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNUOQ010000065.1 Salmonella enterica strain 23NM06CG01-S1 isolate PNUSAS359149 SAMN36000508-rid18566993.guided.34, whole genome shotgun sequence	28057..28494	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUOQ010000068.1 Salmonella enterica strain 23NM06CG01-S1 isolate PNUSAS359149 SAMN36000508-rid18566993.guided.43, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUOQ010000068.1 Salmonella enterica strain 23NM06CG01-S1 isolate PNUSAS359149 SAMN36000508-rid18566993.guided.43, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNUOQ010000054.1 Salmonella enterica strain 23NM06CG01-S1 isolate PNUSAS359149 SAMN36000508-rid18566993.denovo.61, whole genome shotgun sequence	952..1827	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNUOQ010000070.1 Salmonella enterica strain 23NM06CG01-S1 isolate PNUSAS359149 SAMN36000508-rid18566993.guided.58, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNUOQ010000050.1 Salmonella enterica strain 23NM06CG01-S1 isolate PNUSAS359149 SAMN36000508-rid18566993.denovo.56, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABNUOQ010000069.1 Salmonella enterica strain 23NM06CG01-S1 isolate PNUSAS359149 SAMN36000508-rid18566993.guided.55, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABNUOQ010000039.1 Salmonella enterica strain 23NM06CG01-S1 isolate PNUSAS359149 SAMN36000508-rid18566993.denovo.44, whole genome shotgun sequence	11487..12326	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUOQ010000068.1 Salmonella enterica strain 23NM06CG01-S1 isolate PNUSAS359149 SAMN36000508-rid18566993.guided.43, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNUOQ010000038.1 Salmonella enterica strain 23NM06CG01-S1 isolate PNUSAS359149 SAMN36000508-rid18566993.denovo.42, whole genome shotgun sequence	938..2137	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUOQ010000067.1 Salmonella enterica strain 23NM06CG01-S1 isolate PNUSAS359149 SAMN36000508-rid18566993.guided.41, whole genome shotgun sequence	959..2158	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNUOQ010000037.1 Salmonella enterica strain 23NM06CG01-S1 isolate PNUSAS359149 SAMN36000508-rid18566993.denovo.39, whole genome shotgun sequence	9109..9668																																																						avrA	ABNUOQ010000002.1	39349..40218	99.655	870	0						
GCA_032680425.1_PDT001791762.1_genomic.fna	Salmonella_enterica	0.5204	397.235 KB	5	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUOT010000004.1 Salmonella enterica strain PNUSAS359154 SAMN36000501-rid18567273.denovo.04, whole genome shotgun sequence	379620..380057	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUOT010000034.1 Salmonella enterica strain PNUSAS359154 SAMN36000501-rid18567273.guided.21, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032680435.1_PDT001791760.1_genomic.fna	Salmonella_enterica	0.5203	365.482 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI1-I(Alpha),IncI2	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUOV010000001.1 Salmonella enterica strain PNUSAS359158 SAMN36000507-rid18566983.denovo.01, whole genome shotgun sequence	519294..519731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUOV010000040.1 Salmonella enterica strain PNUSAS359158 SAMN36000507-rid18566983.guided.29, whole genome shotgun sequence	1515..1952	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNUOV010000021.1 Salmonella enterica strain PNUSAS359158 SAMN36000507-rid18566983.denovo.21, whole genome shotgun sequence	27602..27743	enterobacteriales	IncI2	100	324 / 324	ABNUOV010000018.1 Salmonella enterica strain PNUSAS359158 SAMN36000507-rid18566983.denovo.18, whole genome shotgun sequence	30068..30391																																																avrA	ABNUOV010000010.1	120503..121371	99.195	870	0						
GCA_032680465.1_PDT001791761.1_genomic.fna	Salmonella_enterica	0.5204	309.666 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUOU010000001.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322953 SAMN36000578-rid18567263.denovo.01, whole genome shotgun sequence	382344..382781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUOU010000043.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322953 SAMN36000578-rid18567263.guided.29, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNUOU010000004.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322953 SAMN36000578-rid18567263.denovo.04, whole genome shotgun sequence	17991..18413	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNUOU010000044.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322953 SAMN36000578-rid18567263.guided.31, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUOU010000002.1	120619..121488	99.195	870	0						
GCA_032680485.1_PDT001791757.1_genomic.fna	Salmonella_enterica	0.5222	374.756 KB	5	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNUOY010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322956 SAMN36000581-rid18567233.denovo.01, whole genome shotgun sequence	404503..404940	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUOY010000024.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322956 SAMN36000581-rid18567233.denovo.27, whole genome shotgun sequence	321..1157	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUOY010000024.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322956 SAMN36000581-rid18567233.denovo.27, whole genome shotgun sequence	1157..1960	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	ABNUOY010000034.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322956 SAMN36000581-rid18567233.guided.23, whole genome shotgun sequence	19899..20336	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUOY010000037.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322956 SAMN36000581-rid18567233.guided.32, whole genome shotgun sequence	3340..4176	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUOY010000037.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322956 SAMN36000581-rid18567233.guided.32, whole genome shotgun sequence	2537..3340	Streptomycin	AF321551	blaTEM-1A	100	861/861	ABNUOY010000024.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322956 SAMN36000581-rid18567233.denovo.27, whole genome shotgun sequence	2998..3858	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNUOY010000037.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322956 SAMN36000581-rid18567233.guided.32, whole genome shotgun sequence	639..1499	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	ABNUOY010000022.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322956 SAMN36000581-rid18567233.denovo.24, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNUOY010000038.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322956 SAMN36000581-rid18567233.guided.33, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNUOY010000024.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322956 SAMN36000581-rid18567233.denovo.27, whole genome shotgun sequence	2021..2836	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNUOY010000037.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322956 SAMN36000581-rid18567233.guided.32, whole genome shotgun sequence	1661..2476	Sulfamethoxazole	AY034138	tet(A)	100	1226/1275	ABNUOY010000024.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322956 SAMN36000581-rid18567233.denovo.27, whole genome shotgun sequence	8511..9736	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	ABNUOY010000036.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322956 SAMN36000581-rid18567233.guided.29, whole genome shotgun sequence	788..1987	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABNUOY010000039.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322956 SAMN36000581-rid18567233.guided.35, whole genome shotgun sequence	713..1987	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNUOY010000022.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322956 SAMN36000581-rid18567233.denovo.24, whole genome shotgun sequence	11449..11699																																																						avrA	ABNUOY010000003.1	130389..131258	99.54	870	0						
GCA_032680505.1_PDT001791758.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUOX010000001.1 Salmonella enterica strain PNUSAS359162 SAMN36000513-rid18567243.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUOX010000024.1 Salmonella enterica strain PNUSAS359162 SAMN36000513-rid18567243.guided.19, whole genome shotgun sequence	8847..9284	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUOX010000017.1 Salmonella enterica strain PNUSAS359162 SAMN36000513-rid18567243.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNUOX010000018.1 Salmonella enterica strain PNUSAS359162 SAMN36000513-rid18567243.denovo.21, whole genome shotgun sequence	3429..3690																																																avrA	ABNUOX010000002.1	553636..554505	99.54	870	0						
GCA_032680545.1_PDT001791759.1_genomic.fna	Salmonella_enterica	0.5215	215.934 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUOW010000001.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUOW010000031.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.denovo.33, whole genome shotgun sequence	12863..13654	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUOW010000031.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.denovo.33, whole genome shotgun sequence	12863..13654	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNUOW010000034.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.denovo.37, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNUOW010000034.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.denovo.37, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNUOW010000054.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.guided.24, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNUOW010000060.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.guided.48, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNUOW010000060.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.guided.48, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNUOW010000061.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.guided.49, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUOW010000061.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.guided.49, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	floR	98.19	1214/1215	ABNUOW010000034.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.denovo.37, whole genome shotgun sequence	8678..9891	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNUOW010000057.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.guided.40, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNUOW010000031.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.denovo.33, whole genome shotgun sequence	11519..12358	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUOW010000061.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.guided.49, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNUOW010000029.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.denovo.31, whole genome shotgun sequence	954..2153	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUOW010000059.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.guided.47, whole genome shotgun sequence	985..2184	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNUOW010000035.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.denovo.38, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNUOW010000058.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.guided.44, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNUOW010000028.1 Salmonella enterica strain PNUSAS359153 SAMN36000524-rid18567253.denovo.30, whole genome shotgun sequence	9109..9668																																																						avrA	ABNUOW010000003.1	150300..151169	99.655	870	0						
GCA_032680625.1_PDT001791752.1_genomic.fna	Salmonella_enterica	0.5197	370.946 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUPD010000001.1 Salmonella enterica strain PNUSAS359151 SAMN36000505-rid18567203.denovo.01, whole genome shotgun sequence	562554..562991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUPD010000030.1 Salmonella enterica strain PNUSAS359151 SAMN36000505-rid18567203.guided.17, whole genome shotgun sequence	20618..21055	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUPD010000010.1	140203..141071	99.195	870	0						
GCA_032680645.1_PDT001791751.1_genomic.fna	Salmonella_enterica	0.5216	728.875 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncM1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUPE010000001.1 Salmonella enterica strain PNUSAS359150 SAMN36000502-rid18567193.denovo.01, whole genome shotgun sequence	462724..463161	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUPE010000025.1 Salmonella enterica strain PNUSAS359150 SAMN36000502-rid18567193.guided.18, whole genome shotgun sequence	8171..8608	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncM1	99.59	739 / 739	ABNUPE010000011.1 Salmonella enterica strain PNUSAS359150 SAMN36000502-rid18567193.denovo.11, whole genome shotgun sequence	34262..35000																																																						avrA	ABNUPE010000003.1	553470..554339	99.77	870	0						
GCA_032680685.1_PDT001791747.1_genomic.fna	Salmonella_enterica	0.5221	316.035 KB	5	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNUPI010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322957 SAMN36000588-rid18567153.denovo.01, whole genome shotgun sequence	499242..499679	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUPI010000023.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322957 SAMN36000588-rid18567153.denovo.26, whole genome shotgun sequence	323..1159	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUPI010000023.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322957 SAMN36000588-rid18567153.denovo.26, whole genome shotgun sequence	1159..1962	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	ABNUPI010000033.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322957 SAMN36000588-rid18567153.guided.20, whole genome shotgun sequence	30285..30722	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUPI010000037.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322957 SAMN36000588-rid18567153.guided.29, whole genome shotgun sequence	4447..5283	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUPI010000037.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322957 SAMN36000588-rid18567153.guided.29, whole genome shotgun sequence	3644..4447	Streptomycin	AF321551	blaTEM-1A	100	861/861	ABNUPI010000023.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322957 SAMN36000588-rid18567153.denovo.26, whole genome shotgun sequence	3000..3860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNUPI010000037.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322957 SAMN36000588-rid18567153.guided.29, whole genome shotgun sequence	1746..2606	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	ABNUPI010000022.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322957 SAMN36000588-rid18567153.denovo.24, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNUPI010000039.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322957 SAMN36000588-rid18567153.guided.32, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNUPI010000023.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322957 SAMN36000588-rid18567153.denovo.26, whole genome shotgun sequence	2023..2838	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNUPI010000037.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322957 SAMN36000588-rid18567153.guided.29, whole genome shotgun sequence	2768..3583	Sulfamethoxazole	AY034138	tet(A)	100	1230/1275	ABNUPI010000023.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322957 SAMN36000588-rid18567153.denovo.26, whole genome shotgun sequence	8513..9742	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	ABNUPI010000036.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322957 SAMN36000588-rid18567153.guided.27, whole genome shotgun sequence	2982..4181	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABNUPI010000038.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322957 SAMN36000588-rid18567153.guided.31, whole genome shotgun sequence	2907..4181	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNUPI010000022.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322957 SAMN36000588-rid18567153.denovo.24, whole genome shotgun sequence	11449..11699																																																						avrA	ABNUPI010000002.1	130389..131258	99.54	870	0						
GCA_032680715.1_PDT001791749.1_genomic.fna	Salmonella_enterica	0.519	185.85 KB	9	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	6	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	2	Col(pHAD28),IncFIB(pN55391)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUPH010000003.1 Salmonella enterica strain 23NM06GT03-S1 isolate PNUSAS359148 SAMN36000510-rid18567173.denovo.03, whole genome shotgun sequence	154648..155085	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUPH010000040.1 Salmonella enterica strain 23NM06GT03-S1 isolate PNUSAS359148 SAMN36000510-rid18567173.denovo.44, whole genome shotgun sequence	8140..8931	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUPH010000040.1 Salmonella enterica strain 23NM06GT03-S1 isolate PNUSAS359148 SAMN36000510-rid18567173.denovo.44, whole genome shotgun sequence	8140..8931	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNUPH010000056.1 Salmonella enterica strain 23NM06GT03-S1 isolate PNUSAS359148 SAMN36000510-rid18567173.denovo.64, whole genome shotgun sequence	93..908	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	aac(6')-Iaa	97.95	438/438	ABNUPH010000063.1 Salmonella enterica strain 23NM06GT03-S1 isolate PNUSAS359148 SAMN36000510-rid18567173.guided.41, whole genome shotgun sequence	5068..5505	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUPH010000064.1 Salmonella enterica strain 23NM06GT03-S1 isolate PNUSAS359148 SAMN36000510-rid18567173.guided.45, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUPH010000064.1 Salmonella enterica strain 23NM06GT03-S1 isolate PNUSAS359148 SAMN36000510-rid18567173.guided.45, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNUPH010000067.1 Salmonella enterica strain 23NM06GT03-S1 isolate PNUSAS359148 SAMN36000510-rid18567173.guided.62, whole genome shotgun sequence	127..942	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	sul1	100	840/840	ABNUPH010000040.1 Salmonella enterica strain 23NM06GT03-S1 isolate PNUSAS359148 SAMN36000510-rid18567173.denovo.44, whole genome shotgun sequence	6796..7635	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUPH010000064.1 Salmonella enterica strain 23NM06GT03-S1 isolate PNUSAS359148 SAMN36000510-rid18567173.guided.45, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNUPH010000037.1 Salmonella enterica strain 23NM06GT03-S1 isolate PNUSAS359148 SAMN36000510-rid18567173.denovo.38, whole genome shotgun sequence	926..2125	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUPH010000065.1 Salmonella enterica strain 23NM06GT03-S1 isolate PNUSAS359148 SAMN36000510-rid18567173.guided.48, whole genome shotgun sequence	957..2156	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNUPH010000043.1 Salmonella enterica strain 23NM06GT03-S1 isolate PNUSAS359148 SAMN36000510-rid18567173.denovo.49, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNUPH010000066.1 Salmonella enterica strain 23NM06GT03-S1 isolate PNUSAS359148 SAMN36000510-rid18567173.guided.54, whole genome shotgun sequence	2204..2677	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNUPH010000047.1 Salmonella enterica strain 23NM06GT03-S1 isolate PNUSAS359148 SAMN36000510-rid18567173.denovo.53, whole genome shotgun sequence	400..530	enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNUPH010000035.1 Salmonella enterica strain 23NM06GT03-S1 isolate PNUSAS359148 SAMN36000510-rid18567173.denovo.36, whole genome shotgun sequence	9109..9668																																																avrA	ABNUPH010000001.1	39428..40297	98.966	870	0						
GCA_032681265.1_ASM3268126v1_genomic.fna	Salmonella_enterica	0.5219	4.892 MB	1	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aph(3')-Ia,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aph(3')-Ia	100	816/816	CP136400.1 Salmonella enterica strain JE4313 chromosome, complete genome	3623429..3624244	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	V00359	aac(6')-Iaa	100	438/438	CP136400.1 Salmonella enterica strain JE4313 chromosome, complete genome	2337094..2337531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	603 / 643	CP136401.1 Salmonella enterica strain JE4313 plasmid pSeFELIX736.1, complete sequence	1..603	enterobacteriales	IncFII(S)	100	262 / 262	CP136401.1 Salmonella enterica strain JE4313 plasmid pSeFELIX736.1, complete sequence	15688..15949																																																avrA	CP136400.1	1034068..1034937	99.885	870	0						
GCA_032681385.1_PDT001791739.1_genomic.fna	Salmonella_enterica	0.5221	277.271 KB	7	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNUPO010000004.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322947 SAMN36000569-rid18567103.denovo.04, whole genome shotgun sequence	369980..370417	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUPO010000025.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322947 SAMN36000569-rid18567103.denovo.25, whole genome shotgun sequence	548..1384	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUPO010000025.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322947 SAMN36000569-rid18567103.denovo.25, whole genome shotgun sequence	1384..2187	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	ABNUPO010000045.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322947 SAMN36000569-rid18567103.guided.27, whole genome shotgun sequence	13664..14101	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUPO010000047.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322947 SAMN36000569-rid18567103.guided.31, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUPO010000047.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322947 SAMN36000569-rid18567103.guided.31, whole genome shotgun sequence	5879..6682	Streptomycin	AF321551	blaTEM-1A	100	861/861	ABNUPO010000025.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322947 SAMN36000569-rid18567103.denovo.25, whole genome shotgun sequence	3225..4085	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNUPO010000047.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322947 SAMN36000569-rid18567103.guided.31, whole genome shotgun sequence	3981..4841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	ABNUPO010000025.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322947 SAMN36000569-rid18567103.denovo.25, whole genome shotgun sequence	10613..11826	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNUPO010000049.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322947 SAMN36000569-rid18567103.guided.34, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNUPO010000025.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322947 SAMN36000569-rid18567103.denovo.25, whole genome shotgun sequence	2248..3063	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNUPO010000047.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322947 SAMN36000569-rid18567103.guided.31, whole genome shotgun sequence	5003..5818	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNUPO010000025.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322947 SAMN36000569-rid18567103.denovo.25, whole genome shotgun sequence	8738..10012	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	ABNUPO010000048.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322947 SAMN36000569-rid18567103.guided.32, whole genome shotgun sequence	788..1987	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABNUPO010000050.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322947 SAMN36000569-rid18567103.guided.41, whole genome shotgun sequence	713..1987	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNUPO010000025.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322947 SAMN36000569-rid18567103.denovo.25, whole genome shotgun sequence	21434..21684																																																						avrA	ABNUPO010000003.1	130389..131258	99.54	870	0						
GCA_032681405.1_PDT001791740.1_genomic.fna	Salmonella_enterica	0.5224	102.043 KB	15	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNUPP010000027.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322954 SAMN36000579-rid18566933.denovo.27, whole genome shotgun sequence	53293..53730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNUPP010000077.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322954 SAMN36000579-rid18566933.guided.50, whole genome shotgun sequence	16080..16517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNUPP010000068.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322954 SAMN36000579-rid18566933.denovo.71, whole genome shotgun sequence	1703..1833	enterobacteriales	Col440I	91.74	109 / 114	ABNUPP010000067.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322954 SAMN36000579-rid18566933.denovo.70, whole genome shotgun sequence	2246..2354		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNUPP010000048.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322954 SAMN36000579-rid18566933.denovo.49, whole genome shotgun sequence	2460..2601																																									avrA	ABNUPP010000003.1	145454..146323	99.425	870	0						
GCA_032681425.1_PDT001791738.1_genomic.fna	Salmonella_enterica	0.5228	61.61 KB	23	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUPS010000013.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322983 SAMN36000516-rid18566923.denovo.013, whole genome shotgun sequence	38031..38468	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUPS010000104.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322983 SAMN36000516-rid18566923.denovo.107, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNUPS010000104.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322983 SAMN36000516-rid18566923.denovo.107, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNUPS010000104.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322983 SAMN36000516-rid18566923.denovo.107, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNUPS010000104.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322983 SAMN36000516-rid18566923.denovo.107, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNUPS010000104.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322983 SAMN36000516-rid18566923.denovo.107, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNUPS010000134.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322983 SAMN36000516-rid18566923.guided.041, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUPS010000138.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322983 SAMN36000516-rid18566923.guided.114, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNUPS010000138.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322983 SAMN36000516-rid18566923.guided.114, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNUPS010000138.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322983 SAMN36000516-rid18566923.guided.114, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNUPS010000138.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322983 SAMN36000516-rid18566923.guided.114, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNUPS010000138.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322983 SAMN36000516-rid18566923.guided.114, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNUPS010000105.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322983 SAMN36000516-rid18566923.denovo.109, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUPS010000137.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322983 SAMN36000516-rid18566923.guided.108, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNUPS010000102.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322983 SAMN36000516-rid18566923.denovo.105, whole genome shotgun sequence	5231..5372																																																						avrA	ABNUPS010000041.1	39546..40415	99.655	870	0						
GCA_032681445.1_PDT001791742.1_genomic.fna	Salmonella_enterica	0.5214	289.674 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNUPN010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322958 SAMN36000589-rid18567123.denovo.01, whole genome shotgun sequence	730813..731250	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNUPN010000035.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322958 SAMN36000589-rid18567123.guided.26, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNUPN010000028.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322958 SAMN36000589-rid18567123.denovo.31, whole genome shotgun sequence	1271..1401	enterobacteriales	Col440I	90.27	113 / 114	ABNUPN010000026.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322958 SAMN36000589-rid18567123.denovo.29, whole genome shotgun sequence	3520..3632																																																avrA	ABNUPN010000002.1	179094..179963	99.425	870	0						
GCA_032681455.1_PDT001791741.1_genomic.fna	Salmonella_enterica	0.5207	241.952 KB	6	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNUPQ010000001.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322951 SAMN36000576-rid18567113.denovo.01, whole genome shotgun sequence	346600..347037	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNUPQ010000065.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322951 SAMN36000576-rid18567113.guided.40, whole genome shotgun sequence	3994..4431	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNUPQ010000041.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322951 SAMN36000576-rid18567113.denovo.44, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABNUPQ010000039.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322951 SAMN36000576-rid18567113.denovo.42, whole genome shotgun sequence	3175..3285																																																avrA	ABNUPQ010000002.1	160608..161477	99.425	870	0						
GCA_032681485.1_PDT001791735.1_genomic.fna	Salmonella_enterica	0.5174	74.891 KB	22	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUPT010000019.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322986 SAMN36000523-rid18566913.denovo.019, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUPT010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322986 SAMN36000523-rid18566913.denovo.059, whole genome shotgun sequence	2315..3151	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNUPT010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322986 SAMN36000523-rid18566913.denovo.059, whole genome shotgun sequence	1513..2315	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNUPT010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322986 SAMN36000523-rid18566913.denovo.059, whole genome shotgun sequence	1512..2315	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNUPT010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322986 SAMN36000523-rid18566913.denovo.059, whole genome shotgun sequence	1512..2315	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNUPT010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322986 SAMN36000523-rid18566913.denovo.059, whole genome shotgun sequence	1512..2315	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNUPT010000165.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322986 SAMN36000523-rid18566913.guided.058, whole genome shotgun sequence	2356..3192	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNUPT010000165.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322986 SAMN36000523-rid18566913.guided.058, whole genome shotgun sequence	1554..2356	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNUPT010000165.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322986 SAMN36000523-rid18566913.guided.058, whole genome shotgun sequence	1553..2356	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNUPT010000165.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322986 SAMN36000523-rid18566913.guided.058, whole genome shotgun sequence	1553..2356	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNUPT010000165.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322986 SAMN36000523-rid18566913.guided.058, whole genome shotgun sequence	1553..2356	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNUPT010000167.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322986 SAMN36000523-rid18566913.guided.087, whole genome shotgun sequence	8536..8973	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNUPT010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322986 SAMN36000523-rid18566913.denovo.041, whole genome shotgun sequence	23143..23469	enterobacteriales	IncHI2A	99.52	630 / 630	ABNUPT010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322986 SAMN36000523-rid18566913.denovo.041, whole genome shotgun sequence	41453..42082		enterobacteriales	IncX1	100	373 / 373	ABNUPT010000109.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322986 SAMN36000523-rid18566913.denovo.113, whole genome shotgun sequence	2218..2590																																									avrA	ABNUPT010000011.1	94074..94943	99.655	870	0						
GCA_032681505.1_PDT001791734.1_genomic.fna	Salmonella_enterica	0.5209	83.352 KB	20	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUPU010000048.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322985 SAMN36000521-rid18567073.denovo.049, whole genome shotgun sequence	15936..16373	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNUPU010000065.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322985 SAMN36000521-rid18567073.denovo.067, whole genome shotgun sequence	6190..6992	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNUPU010000065.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322985 SAMN36000521-rid18567073.denovo.067, whole genome shotgun sequence	6190..6993	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNUPU010000065.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322985 SAMN36000521-rid18567073.denovo.067, whole genome shotgun sequence	6190..6993	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNUPU010000065.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322985 SAMN36000521-rid18567073.denovo.067, whole genome shotgun sequence	6190..6993	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNUPU010000065.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322985 SAMN36000521-rid18567073.denovo.067, whole genome shotgun sequence	5450..6190	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNUPU010000065.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322985 SAMN36000521-rid18567073.denovo.067, whole genome shotgun sequence	5450..6190	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABNUPU010000125.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322985 SAMN36000521-rid18567073.guided.048, whole genome shotgun sequence	15977..16414	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNUPU010000128.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322985 SAMN36000521-rid18567073.guided.089, whole genome shotgun sequence	1821..2623	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNUPU010000128.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322985 SAMN36000521-rid18567073.guided.089, whole genome shotgun sequence	1820..2623	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNUPU010000128.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322985 SAMN36000521-rid18567073.guided.089, whole genome shotgun sequence	1820..2623	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNUPU010000128.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322985 SAMN36000521-rid18567073.guided.089, whole genome shotgun sequence	1820..2623	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABNUPU010000128.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322985 SAMN36000521-rid18567073.guided.089, whole genome shotgun sequence	2623..3363	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABNUPU010000128.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322985 SAMN36000521-rid18567073.guided.089, whole genome shotgun sequence	2623..3363	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNUPU010000092.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322985 SAMN36000521-rid18567073.denovo.096, whole genome shotgun sequence	1843..2524	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABNUPU010000045.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322985 SAMN36000521-rid18567073.denovo.045, whole genome shotgun sequence	4639..5135																																																avrA	ABNUPU010000001.1	174562..175431	98.966	870	0						
GCA_032681545.1_PDT001791731.1_genomic.fna	Salmonella_enterica	0.5225	69.436 KB	23	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUPY010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.denovo.015, whole genome shotgun sequence	84348..84785	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUPY010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.denovo.083, whole genome shotgun sequence	11943..12734	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUPY010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.denovo.083, whole genome shotgun sequence	11943..12734	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNUPY010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.denovo.089, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNUPY010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.denovo.089, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNUPY010000150.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.guided.050, whole genome shotgun sequence	34877..35314	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUPY010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.guided.082, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUPY010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.guided.082, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNUPY010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.guided.118, whole genome shotgun sequence	237..1262	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNUPY010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.guided.149, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aac(3)-IV	99.87	777/777	ABNUPY010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.guided.150, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNUPY010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.denovo.131, whole genome shotgun sequence	1701..2576	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNUPY010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.guided.135, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNUPY010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.denovo.089, whole genome shotgun sequence	8678..9891	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNUPY010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.guided.109, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNUPY010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.denovo.083, whole genome shotgun sequence	10599..11438	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUPY010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.guided.082, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNUPY010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.denovo.091, whole genome shotgun sequence	1843..3042	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUPY010000154.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.guided.111, whole genome shotgun sequence	1828..3027	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNUPY010000073.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322873 SAMN36000499-rid18567053.denovo.076, whole genome shotgun sequence	14637..15196																																																						avrA	ABNUPY010000005.1	124341..125210	99.655	870	0						
GCA_032681565.1_PDT001791733.1_genomic.fna	Salmonella_enterica	0.5213	141.355 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUPW010000008.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322984 SAMN36000519-rid18566903.denovo.08, whole genome shotgun sequence	20239..20676	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUPW010000076.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322984 SAMN36000519-rid18566903.guided.35, whole genome shotgun sequence	12429..12866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUPW010000047.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322984 SAMN36000519-rid18566903.denovo.50, whole genome shotgun sequence	6826..7468	enterobacteriales	IncFII(S)	100	262 / 262	ABNUPW010000051.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322984 SAMN36000519-rid18566903.denovo.54, whole genome shotgun sequence	1146..1407																																																avrA	ABNUPW010000006.1	115317..116186	99.54	870	0						
GCA_032681585.1_PDT001791730.1_genomic.fna	Salmonella_enterica	0.5226	57.735 KB	27	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	10	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUPX010000022.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.denovo.022, whole genome shotgun sequence	52273..52710	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUPX010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.denovo.078, whole genome shotgun sequence	18476..19267	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUPX010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.denovo.078, whole genome shotgun sequence	18476..19267	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNUPX010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.denovo.133, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNUPX010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.denovo.133, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNUPX010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.denovo.161, whole genome shotgun sequence	91..906	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aac(6')-Iaa	97.49	438/438	ABNUPX010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.guided.048, whole genome shotgun sequence	24507..24944	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUPX010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.guided.076, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUPX010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.guided.076, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNUPX010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.guided.132, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNUPX010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.guided.132, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNUPX010000172.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.guided.158, whole genome shotgun sequence	127..942	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	blaCTX-M-65	100	876/876	ABNUPX010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.denovo.134, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNUPX010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.guided.136, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNUPX010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.denovo.124, whole genome shotgun sequence	3179..4392	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNUPX010000168.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.guided.127, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNUPX010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.denovo.078, whole genome shotgun sequence	17132..17971	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUPX010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.guided.076, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNUPX010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.denovo.078, whole genome shotgun sequence	3416..4615	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUPX010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.guided.076, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNUPX010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.denovo.118, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNUPX010000169.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.guided.129, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNUPX010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322872 SAMN36000496-rid18566893.denovo.115, whole genome shotgun sequence	5361..5920																																																						avrA	ABNUPX010000004.1	95321..96190	99.655	870	0						
GCA_032681605.1_PDT001791732.1_genomic.fna	Salmonella_enterica	0.5215	108.703 KB	16	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUPV010000020.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.denovo.020, whole genome shotgun sequence	74342..74779	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUPV010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.denovo.047, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUPV010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.denovo.047, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNUPV010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.denovo.073, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNUPV010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.denovo.073, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNUPV010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.guided.033, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUPV010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.guided.078, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUPV010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.guided.078, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNUPV010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.guided.087, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNUPV010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.guided.087, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNUPV010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.denovo.100, whole genome shotgun sequence	974..1849	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNUPV010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.guided.098, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNUPV010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.denovo.073, whole genome shotgun sequence	8678..9891	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNUPV010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.guided.084, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNUPV010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.denovo.047, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUPV010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.guided.078, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNUPV010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.denovo.047, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUPV010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.guided.054, whole genome shotgun sequence	4385..5584	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNUPV010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322945 SAMN36000511-rid18567063.denovo.046, whole genome shotgun sequence	21559..22118																																																						avrA	ABNUPV010000004.1	123992..124861	99.655	870	0						
GCA_032681625.1_PDT001791729.1_genomic.fna	Salmonella_enterica	0.5202	74.083 KB	23	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUQA010000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322980 SAMN36000504-rid18566883.denovo.008, whole genome shotgun sequence	75483..75920	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUQA010000192.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322980 SAMN36000504-rid18566883.guided.067, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNUQA010000123.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322980 SAMN36000504-rid18566883.denovo.126, whole genome shotgun sequence	763..893	enterobacteriales	IncHI2A	99.52	630 / 630	ABNUQA010000117.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322980 SAMN36000504-rid18566883.denovo.120, whole genome shotgun sequence	1570..2199		enterobacteriales	IncX1	100	373 / 373	ABNUQA010000138.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322980 SAMN36000504-rid18566883.denovo.141, whole genome shotgun sequence	2153..2525																																									avrA	ABNUQA010000036.1	39484..40353	99.655	870	0						
GCA_032681645.1_PDT001791728.1_genomic.fna	Salmonella_enterica	0.5213	118.486 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	10	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUPZ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.denovo.01, whole genome shotgun sequence	382058..382495	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUPZ010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.denovo.37, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUPZ010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.denovo.37, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNUPZ010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.denovo.72, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNUPZ010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.denovo.72, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNUPZ010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.denovo.91, whole genome shotgun sequence	91..906	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	X62115	aac(6')-Iaa	97.49	438/438	ABNUPZ010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.guided.42, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUPZ010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.guided.55, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUPZ010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.guided.55, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNUPZ010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.guided.83, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNUPZ010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.guided.83, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNUPZ010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.guided.90, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	X62115	blaCTX-M-65	100	876/876	ABNUPZ010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.denovo.76, whole genome shotgun sequence	952..1827	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNUPZ010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.guided.75, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNUPZ010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.denovo.68, whole genome shotgun sequence	2878..4091	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNUPZ010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.guided.73, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNUPZ010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.denovo.37, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUPZ010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.guided.55, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNUPZ010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.denovo.37, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUPZ010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.guided.46, whole genome shotgun sequence	1895..3094	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNUPZ010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.denovo.63, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNUPZ010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.guided.69, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNUPZ010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322874 SAMN36000491-rid18566873.denovo.52, whole genome shotgun sequence	14637..15196																																																						avrA	ABNUPZ010000004.1	149829..150698	99.655	870	0						
GCA_032681685.1_PDT001791725.1_genomic.fna	Salmonella_enterica	0.5224	82.581 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUQB010000024.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322871 SAMN36000488-rid18566843.denovo.024, whole genome shotgun sequence	62417..62854	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUQB010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322871 SAMN36000488-rid18566843.denovo.063, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUQB010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322871 SAMN36000488-rid18566843.denovo.063, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNUQB010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322871 SAMN36000488-rid18566843.guided.044, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNUQB010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322871 SAMN36000488-rid18566843.guided.073, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNUQB010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322871 SAMN36000488-rid18566843.guided.073, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNUQB010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322871 SAMN36000488-rid18566843.denovo.094, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNUQB010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322871 SAMN36000488-rid18566843.guided.097, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNUQB010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322871 SAMN36000488-rid18566843.denovo.108, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABNUQB010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322871 SAMN36000488-rid18566843.guided.106, whole genome shotgun sequence	361..777	Fosfomycin	AB522970	sul1	100	840/840	ABNUQB010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322871 SAMN36000488-rid18566843.denovo.063, whole genome shotgun sequence	17100..17939	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUQB010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322871 SAMN36000488-rid18566843.guided.073, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNUQB010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322871 SAMN36000488-rid18566843.denovo.063, whole genome shotgun sequence	3384..4583	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUQB010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322871 SAMN36000488-rid18566843.guided.102, whole genome shotgun sequence	1889..3088	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNUQB010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322871 SAMN36000488-rid18566843.denovo.081, whole genome shotgun sequence	7918..8477																																																						avrA	ABNUQB010000014.1	93814..94683	99.655	870	0						
GCA_032681745.1_PDT001791724.1_genomic.fna	Salmonella_enterica	0.5214	385.51 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(C),tet(C)	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),ColE10,IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNUQC010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322991 SAMN36000186-rid18566833.denovo.01, whole genome shotgun sequence	512873..513310	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNUQC010000029.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322991 SAMN36000186-rid18566833.guided.21, whole genome shotgun sequence	24359..24796	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNUQC010000023.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322991 SAMN36000186-rid18566833.denovo.28, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNUQC010000033.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322991 SAMN36000186-rid18566833.guided.27, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	tet(C)	99.83	1191/1191	ABNUQC010000022.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322991 SAMN36000186-rid18566833.denovo.24, whole genome shotgun sequence	1430..2620	Doxycycline, Tetracycline	AF055345	tet(C)	99.83	1191/1191	ABNUQC010000031.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322991 SAMN36000186-rid18566833.guided.25, whole genome shotgun sequence	1469..2659	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNUQC010000023.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322991 SAMN36000186-rid18566833.denovo.28, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNUQC010000033.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322991 SAMN36000186-rid18566833.guided.27, whole genome shotgun sequence	2145..2275		enterobacteriales	ColE10	100	177 / 177	ABNUQC010000022.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322991 SAMN36000186-rid18566833.denovo.24, whole genome shotgun sequence	7394..7570		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNUQC010000012.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322991 SAMN36000186-rid18566833.denovo.12, whole genome shotgun sequence	94247..94388																																		avrA	ABNUQC010000002.1	213458..214327	99.54	870	0						
GCA_032681785.1_PDT001791719.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUQF010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322989 SAMN35999595-rid18566783.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUQF010000031.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322989 SAMN35999595-rid18566783.guided.16, whole genome shotgun sequence	6978..7415	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUQF010000018.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322989 SAMN35999595-rid18566783.denovo.21, whole genome shotgun sequence	6856..7498	enterobacteriales	IncFII(S)	100	262 / 262	ABNUQF010000020.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322989 SAMN35999595-rid18566783.denovo.23, whole genome shotgun sequence	3393..3654																																																avrA	ABNUQF010000002.1	553636..554505	99.54	870	0						
GCA_032681805.1_PDT001791718.1_genomic.fna	Salmonella_enterica	0.5197	155.955 KB	11	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaTEM-1B,blaTEM-1B,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),ColRNAI,ColRNAI,IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNUQG010000002.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.denovo.02, whole genome shotgun sequence	148504..148941	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNUQG010000029.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.denovo.29, whole genome shotgun sequence	51575..52354	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	98.17	438/438	ABNUQG010000061.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.guided.39, whole genome shotgun sequence	14442..14879	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNUQG010000066.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.guided.48, whole genome shotgun sequence	6324..7103	Spectinomycin, Streptomycin	D43625	blaTEM-1B	100	861/861	ABNUQG010000019.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.denovo.19, whole genome shotgun sequence	14755..15615	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNUQG010000062.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.guided.42, whole genome shotgun sequence	14773..15633	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	fosA7	97.16	423/423	ABNUQG010000003.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.denovo.03, whole genome shotgun sequence	160606..161028	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNUQG010000063.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.guided.44, whole genome shotgun sequence	14127..14549	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNUQG010000029.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.denovo.29, whole genome shotgun sequence	52859..53698	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUQG010000066.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.guided.48, whole genome shotgun sequence	7608..8447	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNUQG010000051.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.denovo.57, whole genome shotgun sequence	928..2127	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUQG010000067.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.guided.58, whole genome shotgun sequence	959..2158	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNUQG010000049.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.denovo.55, whole genome shotgun sequence	186..316	enterobacteriales	ColRNAI	90.08	131 / 130	ABNUQG010000047.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.denovo.53, whole genome shotgun sequence	3981..4111		enterobacteriales	ColRNAI	90.83	109 / 130	ABNUQG010000050.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.denovo.56, whole genome shotgun sequence	319..427		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNUQG010000019.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.denovo.19, whole genome shotgun sequence	4676..4817		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNUQG010000062.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322993 SAMN36000184-rid18566773.guided.42, whole genome shotgun sequence	4694..4835																											avrA	ABNUQG010000001.1	104905..105774	99.655	870	0						
GCA_032681825.1_PDT001791716.1_genomic.fna	Salmonella_enterica	0.5197	167.374 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUQJ010000011.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322987 SAMN35999593-rid18566753.denovo.11, whole genome shotgun sequence	84702..85139	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUQJ010000061.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322987 SAMN35999593-rid18566753.guided.42, whole genome shotgun sequence	10124..10561	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNUQJ010000040.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322987 SAMN35999593-rid18566753.denovo.43, whole genome shotgun sequence	4655..4914	enterobacteriales	IncX1	100	373 / 373	ABNUQJ010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322987 SAMN35999593-rid18566753.denovo.46, whole genome shotgun sequence	2153..2525																																																avrA	ABNUQJ010000028.1	39594..40463	99.655	870	0						
GCA_032681865.1_PDT001791715.1_genomic.fna	Salmonella_enterica	0.5221	193.894 KB	7	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUQL010000001.1 Salmonella enterica subsp. enterica serovar London strain FSIS12322992 SAMN36000187-rid18566743.denovo.01, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUQL010000042.1 Salmonella enterica subsp. enterica serovar London strain FSIS12322992 SAMN36000187-rid18566743.guided.30, whole genome shotgun sequence	8086..8523	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUQL010000009.1	36961..37830	99.425	870	0						
GCA_032682665.1_PDT001791652.1_genomic.fna	Salmonella_enterica	0.5218	228.911 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_110,sucA_9,thrA_2	302	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_110	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNURI010000001.1 Salmonella enterica strain PNUSAS359092 SAMN35998426-rid18566243.denovo.01, whole genome shotgun sequence	207030..207467	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNURI010000053.1 Salmonella enterica strain PNUSAS359092 SAMN35998426-rid18566243.guided.33, whole genome shotgun sequence	1849..2286	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNURI010000014.1 Salmonella enterica strain PNUSAS359092 SAMN35998426-rid18566243.denovo.14, whole genome shotgun sequence	48421..49063	enterobacteriales	IncFII(S)	100	262 / 262	ABNURI010000014.1 Salmonella enterica strain PNUSAS359092 SAMN35998426-rid18566243.denovo.14, whole genome shotgun sequence	64148..64409																																																avrA	ABNURI010000004.1	208704..209573	99.885	870	0						
GCA_032682685.1_PDT001791653.1_genomic.fna	Salmonella_enterica	0.5197	199.708 KB	8	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	5	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNURG010000003.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322994 SAMN36000188-rid18566253.denovo.03, whole genome shotgun sequence	148121..148558	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNURG010000022.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322994 SAMN36000188-rid18566253.denovo.22, whole genome shotgun sequence	51586..52365	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	98.17	438/438	ABNURG010000062.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322994 SAMN36000188-rid18566253.guided.36, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNURG010000065.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322994 SAMN36000188-rid18566253.guided.41, whole genome shotgun sequence	6185..6964	Spectinomycin, Streptomycin	D43625	fosA7	97.16	423/423	ABNURG010000002.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322994 SAMN36000188-rid18566253.denovo.02, whole genome shotgun sequence	311934..312356	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNURG010000061.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322994 SAMN36000188-rid18566253.guided.34, whole genome shotgun sequence	18575..18997	Fosfomycin	LAPJ01000014	sul1	99.88	840/840	ABNURG010000022.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322994 SAMN36000188-rid18566253.denovo.22, whole genome shotgun sequence	52870..53709	Sulfamethoxazole	U12338	sul1	99.88	840/840	ABNURG010000065.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322994 SAMN36000188-rid18566253.guided.41, whole genome shotgun sequence	7469..8308	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNURG010000044.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322994 SAMN36000188-rid18566253.denovo.50, whole genome shotgun sequence	853..2052	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNURG010000066.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322994 SAMN36000188-rid18566253.guided.48, whole genome shotgun sequence	930..2129	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNURG010000040.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322994 SAMN36000188-rid18566253.denovo.45, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	90.27	113 / 131	ABNURG010000045.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322994 SAMN36000188-rid18566253.denovo.51, whole genome shotgun sequence	1600..1712		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNURG010000025.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322994 SAMN36000188-rid18566253.denovo.25, whole genome shotgun sequence	41262..41403																																									avrA	ABNURG010000004.1	39484..40353	99.655	870	0						
GCA_032682745.1_PDT001791649.1_genomic.fna	Salmonella_enterica	0.5197	144.048 KB	12	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNURJ010000007.1 Salmonella enterica strain PNUSAS359104 SAMN35998400-rid18565923.denovo.07, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNURJ010000069.1 Salmonella enterica strain PNUSAS359104 SAMN35998400-rid18565923.guided.47, whole genome shotgun sequence	16438..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncX1	97.86	374 / 374	ABNURJ010000043.1 Salmonella enterica strain PNUSAS359104 SAMN35998400-rid18565923.denovo.45, whole genome shotgun sequence	14639..15012																																																																	
GCA_032682765.1_PDT001791647.1_genomic.fna	Salmonella_enterica	0.5191	430.193 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	2	acrB_p.R717Q,parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNURL010000001.1 Salmonella enterica strain PNUSAS359097 SAMN35998406-rid18566223.denovo.01, whole genome shotgun sequence	605733..606170	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNURL010000024.1 Salmonella enterica strain PNUSAS359097 SAMN35998406-rid18566223.guided.12, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										acrB p.R717Q	CGA -> CAA	R -> Q	Azithromycin	31730615	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																						avrA	ABNURL010000009.1	140179..141047	99.195	870	0						
GCA_032682805.1_PDT001791643.1_genomic.fna	Salmonella_enterica	0.5196	368.134 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNURN010000001.1 Salmonella enterica strain PNUSAS359095 SAMN35998403-rid18566203.denovo.01, whole genome shotgun sequence	486112..486549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNURN010000032.1 Salmonella enterica strain PNUSAS359095 SAMN35998403-rid18566203.guided.22, whole genome shotgun sequence	14944..15381	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNURN010000005.1 Salmonella enterica strain PNUSAS359095 SAMN35998403-rid18566203.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNURN010000033.1 Salmonella enterica strain PNUSAS359095 SAMN35998403-rid18566203.guided.23, whole genome shotgun sequence	4199..4621	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNURN010000002.1	173925..174794	99.195	870	0						
GCA_032682865.1_PDT001791637.1_genomic.fna	Salmonella_enterica	0.5208	489.739 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNURT010000001.1 Salmonella enterica strain PNUSAS359098 SAMN35998416-rid18566173.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNURT010000021.1 Salmonella enterica strain PNUSAS359098 SAMN35998416-rid18566173.guided.11, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNURT010000012.1 Salmonella enterica strain PNUSAS359098 SAMN35998416-rid18566173.denovo.14, whole genome shotgun sequence	48378..49020	enterobacteriales	IncFII(S)	100	262 / 262	ABNURT010000012.1 Salmonella enterica strain PNUSAS359098 SAMN35998416-rid18566173.denovo.14, whole genome shotgun sequence	4125..4386																																																avrA	ABNURT010000002.1	553187..554056	99.54	870	0						
GCA_032682905.1_PDT001791635.1_genomic.fna	Salmonella_enterica	0.5205	380.561 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNURP010000001.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12322990 SAMN36000185-rid18566163.denovo.01, whole genome shotgun sequence	177159..177596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNURP010000030.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12322990 SAMN36000185-rid18566163.guided.25, whole genome shotgun sequence	6971..7408	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNURP010000007.1	148143..149012	99.77	870	0						
GCA_032682925.1_PDT001791632.1_genomic.fna	Salmonella_enterica	0.52	173.092 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNURS010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322988 SAMN35999594-rid18565833.denovo.01, whole genome shotgun sequence	270188..270625	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNURS010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322988 SAMN35999594-rid18565833.guided.35, whole genome shotgun sequence	8847..9284	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNURS010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322988 SAMN35999594-rid18565833.denovo.26, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX1	98.93	374 / 374	ABNURS010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322988 SAMN35999594-rid18565833.denovo.33, whole genome shotgun sequence	32952..33325																																																avrA	ABNURS010000012.1	81825..82694	99.655	870	0						
GCA_032682945.1_PDT001791633.1_genomic.fna	Salmonella_enterica	0.522	500.928 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	2	Col156,IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNURQ010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.denovo.01, whole genome shotgun sequence	796125..796562	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNURQ010000020.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.denovo.23, whole genome shotgun sequence	350..1186	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNURQ010000020.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.denovo.23, whole genome shotgun sequence	1186..1989	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	ABNURQ010000029.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.guided.18, whole genome shotgun sequence	6971..7408	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNURQ010000032.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.guided.24, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNURQ010000032.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.guided.24, whole genome shotgun sequence	5879..6682	Streptomycin	AF321551	blaTEM-1A	100	861/861	ABNURQ010000020.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.denovo.23, whole genome shotgun sequence	3027..3887	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABNURQ010000032.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.guided.24, whole genome shotgun sequence	3981..4841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	ABNURQ010000018.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.denovo.19, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNURQ010000034.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.guided.29, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNURQ010000020.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.denovo.23, whole genome shotgun sequence	2050..2865	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNURQ010000032.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.guided.24, whole genome shotgun sequence	5003..5818	Sulfamethoxazole	AY034138	tet(A)	100	1226/1275	ABNURQ010000020.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.denovo.23, whole genome shotgun sequence	8540..9765	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	ABNURQ010000033.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.guided.25, whole genome shotgun sequence	788..1987	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABNURQ010000035.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.guided.31, whole genome shotgun sequence	713..1987	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	97.37	152 / 154	ABNURQ010000022.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.denovo.27, whole genome shotgun sequence	643..794	enterobacteriales	IncR	100	251 / 251	ABNURQ010000018.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322961 SAMN35999596-rid18566153.denovo.19, whole genome shotgun sequence	11449..11699																																																avrA	ABNURQ010000002.1	130389..131258	99.54	870	0						
GCA_032682965.1_PDT001791631.1_genomic.fna	Salmonella_enterica	0.5204	302.971 KB	6	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNURU010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322959 SAMN35999226-rid18565823.denovo.01, whole genome shotgun sequence	76811..77248	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNURU010000028.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322959 SAMN35999226-rid18565823.guided.23, whole genome shotgun sequence	26325..26762	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNURU010000018.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322959 SAMN35999226-rid18565823.denovo.18, whole genome shotgun sequence	15755..16288																																																						avrA	ABNURU010000005.1	149704..150573	99.54	870	0						
GCA_032683025.1_PDT001791627.1_genomic.fna	Salmonella_enterica	0.523	76.985 KB	21	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUSA010000023.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309732 SAMN35998655-rid18565793.denovo.023, whole genome shotgun sequence	52439..52876	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNUSA010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309732 SAMN35998655-rid18565793.guided.062, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNUSA010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309732 SAMN35998655-rid18565793.denovo.082, whole genome shotgun sequence	9765..9906																																																						avrA	ABNUSA010000013.1	81701..82570	99.655	870	0						
GCA_032683045.1_PDT001791630.1_genomic.fna	Salmonella_enterica	0.5215	182.19 KB	10	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNURW010000001.1 Salmonella enterica subsp. enterica serovar London strain FSIS12322960 SAMN35999227-rid18566143.denovo.01, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNURW010000046.1 Salmonella enterica subsp. enterica serovar London strain FSIS12322960 SAMN35999227-rid18566143.guided.28, whole genome shotgun sequence	44304..44741	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNURW010000041.1 Salmonella enterica subsp. enterica serovar London strain FSIS12322960 SAMN35999227-rid18566143.denovo.44, whole genome shotgun sequence	2092..2736	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNURW010000049.1 Salmonella enterica subsp. enterica serovar London strain FSIS12322960 SAMN35999227-rid18566143.guided.46, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNURW010000041.1 Salmonella enterica subsp. enterica serovar London strain FSIS12322960 SAMN35999227-rid18566143.denovo.44, whole genome shotgun sequence	1436..1566	enterobacteriales	ColRNAI	90.84	131 / 130	ABNURW010000040.1 Salmonella enterica subsp. enterica serovar London strain FSIS12322960 SAMN35999227-rid18566143.denovo.43, whole genome shotgun sequence	2516..2646																																																avrA	ABNURW010000020.1	36961..37830	99.425	870	0						
GCA_032683085.1_PDT001791623.1_genomic.fna	Salmonella_enterica	0.5213	91.099 KB	17	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUSC010000009.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309735 SAMN35998658-rid18566123.denovo.009, whole genome shotgun sequence	83715..84152	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNUSC010000074.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309735 SAMN35998658-rid18566123.denovo.079, whole genome shotgun sequence	555..1370	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	EU722351	aph(6)-Id	100	837/837	ABNUSC010000076.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309735 SAMN35998658-rid18566123.denovo.082, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUSC010000076.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309735 SAMN35998658-rid18566123.denovo.082, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNUSC010000111.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309735 SAMN35998658-rid18566123.guided.050, whole genome shotgun sequence	15607..16044	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNUSC010000115.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309735 SAMN35998658-rid18566123.guided.078, whole genome shotgun sequence	1890..2705	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	EU722351	aph(6)-Id	100	837/837	ABNUSC010000116.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309735 SAMN35998658-rid18566123.guided.081, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUSC010000116.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309735 SAMN35998658-rid18566123.guided.081, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNUSC010000091.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309735 SAMN35998658-rid18566123.denovo.098, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNUSC010000117.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309735 SAMN35998658-rid18566123.guided.097, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNUSC010000076.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309735 SAMN35998658-rid18566123.denovo.082, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNUSC010000116.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309735 SAMN35998658-rid18566123.guided.081, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNUSC010000060.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309735 SAMN35998658-rid18566123.denovo.062, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNUSC010000114.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309735 SAMN35998658-rid18566123.guided.070, whole genome shotgun sequence	1654..2859	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncX1	98.66	374 / 374	ABNUSC010000064.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309735 SAMN35998658-rid18566123.denovo.066, whole genome shotgun sequence	1077..1450																																																						avrA	ABNUSC010000001.1	93833..94702	99.885	870	0						
GCA_032683225.1_PDT001791616.1_genomic.fna	Salmonella_enterica	0.5217	97.372 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUSI010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309736 SAMN35998659-rid18565713.denovo.001, whole genome shotgun sequence	85422..85859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUSI010000108.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309736 SAMN35998659-rid18565713.guided.029, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNUSI010000039.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309736 SAMN35998659-rid18565713.denovo.040, whole genome shotgun sequence	21681..22496	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNUSI010000110.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309736 SAMN35998659-rid18565713.guided.069, whole genome shotgun sequence	4044..4859	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNUSI010000039.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309736 SAMN35998659-rid18565713.denovo.040, whole genome shotgun sequence	24673..25872	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUSI010000110.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309736 SAMN35998659-rid18565713.guided.069, whole genome shotgun sequence	7036..8235	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNUSI010000087.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309736 SAMN35998659-rid18565713.denovo.091, whole genome shotgun sequence	371..501																																																						avrA	ABNUSI010000008.1	100058..100927	99.885	870	0						
GCA_032683245.1_PDT001791617.1_genomic.fna	Salmonella_enterica	0.5209	118.541 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUSH010000028.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309734 SAMN35998657-rid18565723.denovo.28, whole genome shotgun sequence	14169..14606	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUSH010000088.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309734 SAMN35998657-rid18565723.guided.29, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUSH010000059.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309734 SAMN35998657-rid18565723.denovo.62, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABNUSH010000069.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309734 SAMN35998657-rid18565723.denovo.72, whole genome shotgun sequence	3413..3674		enterobacteriales	IncX1	98.93	374 / 374	ABNUSH010000065.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309734 SAMN35998657-rid18565723.denovo.68, whole genome shotgun sequence	2694..3067																																									avrA	ABNUSH010000002.1	174991..175860	99.54	870	0						
GCA_032683265.1_PDT001791615.1_genomic.fna	Salmonella_enterica	0.5199	144.687 KB	11	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNUSK010000007.1 Salmonella enterica strain PNUSAS359105 SAMN35998419-rid18566103.denovo.07, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNUSK010000067.1 Salmonella enterica strain PNUSAS359105 SAMN35998419-rid18566103.guided.29, whole genome shotgun sequence	16438..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncX1	97.86	374 / 374	ABNUSK010000042.1 Salmonella enterica strain PNUSAS359105 SAMN35998419-rid18566103.denovo.44, whole genome shotgun sequence	14641..15014																																																																	
GCA_032683285.1_PDT001791614.1_genomic.fna	Salmonella_enterica	0.5219	58.916 KB	25	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUSJ010000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309737 SAMN35998660-rid18565703.denovo.018, whole genome shotgun sequence	21807..22244	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUSJ010000137.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309737 SAMN35998660-rid18565703.guided.066, whole genome shotgun sequence	14829..15266	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNUSJ010000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309737 SAMN35998660-rid18565703.denovo.011, whole genome shotgun sequence	56281..57096	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNUSJ010000140.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309737 SAMN35998660-rid18565703.guided.092, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNUSJ010000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309737 SAMN35998660-rid18565703.denovo.011, whole genome shotgun sequence	59273..60472	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNUSJ010000140.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309737 SAMN35998660-rid18565703.guided.092, whole genome shotgun sequence	4544..5743	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNUSJ010000110.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309737 SAMN35998660-rid18565703.denovo.114, whole genome shotgun sequence	371..501																																																						avrA	ABNUSJ010000008.1	99955..100824	99.885	870	0						
GCA_032683305.1_PDT001791613.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUSN010000001.1 Salmonella enterica strain PNUSAS359088 SAMN35998427-rid18566093.denovo.01, whole genome shotgun sequence	774365..774802	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUSN010000023.1 Salmonella enterica strain PNUSAS359088 SAMN35998427-rid18566093.guided.16, whole genome shotgun sequence	1210..1647	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUSN010000012.1 Salmonella enterica strain PNUSAS359088 SAMN35998427-rid18566093.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNUSN010000012.1 Salmonella enterica strain PNUSAS359088 SAMN35998427-rid18566093.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNUSN010000002.1	553635..554504	99.54	870	0						
GCA_032683365.1_PDT001791609.1_genomic.fna	Salmonella_enterica	0.523	232.904 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUSO010000001.1 Salmonella enterica strain PNUSAS359099 SAMN35998415-rid18565673.denovo.01, whole genome shotgun sequence	493957..494394	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUSO010000046.1 Salmonella enterica strain PNUSAS359099 SAMN35998415-rid18565673.guided.30, whole genome shotgun sequence	5484..5921	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032683405.1_PDT001791607.1_genomic.fna	Salmonella_enterica	0.5197	160.901 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNUSQ010000010.1 Salmonella enterica strain PNUSAS359086 SAMN35998417-rid18565653.denovo.10, whole genome shotgun sequence	29759..30193	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNUSQ010000057.1 Salmonella enterica strain PNUSAS359086 SAMN35998417-rid18565653.guided.29, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																																						
GCA_032683425.1_PDT001791606.1_genomic.fna	Salmonella_enterica	0.5206	93.121 KB	17	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUSR010000010.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309733 SAMN35998656-rid18565643.denovo.010, whole genome shotgun sequence	86582..87019	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUSR010000119.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309733 SAMN35998656-rid18565643.guided.060, whole genome shotgun sequence	15905..16342	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNUSR010000083.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309733 SAMN35998656-rid18565643.denovo.086, whole genome shotgun sequence	256..397	enterobacteriales	IncX1	100	373 / 373	ABNUSR010000069.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309733 SAMN35998656-rid18565643.denovo.072, whole genome shotgun sequence	2153..2525																																																avrA	ABNUSR010000040.1	39484..40353	99.655	870	0						
GCA_032683445.1_PDT001791605.1_genomic.fna	Salmonella_enterica	0.5215	300.863 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aadA24,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA24,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,floR,floR,qnrB19,qnrB19,sul2,sul2,sul2,sul2,tet(M),tet(B),tet(M),tet(B),dfrA12,dfrA12	0		3	Col(pHAD28),Col(pHAD28),IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUSS010000001.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.denovo.01, whole genome shotgun sequence	145419..145856	Amikacin, Tobramycin	NC_003197	aadA24	99.36	780/780	ABNUSS010000035.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.denovo.37, whole genome shotgun sequence	4690..5469	Spectinomycin, Streptomycin	DQ677333	aph(6)-Id	100	837/837	ABNUSS010000053.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.denovo.61, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUSS010000053.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.denovo.61, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNUSS010000062.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.guided.34, whole genome shotgun sequence	15046..15483	Amikacin, Tobramycin	NC_003197	aadA24	99.36	780/780	ABNUSS010000064.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.guided.40, whole genome shotgun sequence	4033..4812	Spectinomycin, Streptomycin	DQ677333	aph(6)-Id	100	837/837	ABNUSS010000068.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.guided.60, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUSS010000068.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.guided.60, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNUSS010000052.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.denovo.58, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNUSS010000069.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.guided.63, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.11	1214/1215	ABNUSS010000047.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.denovo.52, whole genome shotgun sequence	999..2212	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNUSS010000067.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.guided.59, whole genome shotgun sequence	16..1229	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNUSS010000048.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.denovo.54, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNUSS010000066.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.guided.53, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABNUSS010000070.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.guided.67, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNUSS010000071.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.guided.68, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNUSS010000072.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.guided.69, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNUSS010000073.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.guided.70, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(M)	96.15	1920/1920	ABNUSS010000035.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.denovo.37, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNUSS010000036.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.denovo.38, whole genome shotgun sequence	6921..8126	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNUSS010000064.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.guided.40, whole genome shotgun sequence	186..2105	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNUSS010000065.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.guided.43, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABNUSS010000035.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.denovo.37, whole genome shotgun sequence	5889..6386	Trimethoprim	AM040708	dfrA12	100	498/498	ABNUSS010000064.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.guided.40, whole genome shotgun sequence	5232..5729	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	100	131 / 131	ABNUSS010000048.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.denovo.54, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNUSS010000066.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.guided.53, whole genome shotgun sequence	2044..2174		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNUSS010000033.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.denovo.35, whole genome shotgun sequence	14009..14690		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNUSS010000022.1 Salmonella enterica strain PNUSAS359103 SAMN35998402-rid18566073.denovo.22, whole genome shotgun sequence	55736..56232																																		avrA	ABNUSS010000002.1	540746..541615	99.885	870	0						
GCA_032683465.1_PDT001791604.1_genomic.fna	Salmonella_enterica	0.5216	347.233 KB	6	aroC_2,dnaN_14,hemD_24,hisD_14,purE_49,sucA_19,thrA_8	149	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_49	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNUSU010000006.1 Salmonella enterica strain PNUSAS359091 SAMN35998423-rid18565633.denovo.06, whole genome shotgun sequence	37877..38314	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNUSU010000036.1 Salmonella enterica strain PNUSAS359091 SAMN35998423-rid18565633.guided.31, whole genome shotgun sequence	1874..2311	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNUSU010000014.1 Salmonella enterica strain PNUSAS359091 SAMN35998423-rid18565633.denovo.14, whole genome shotgun sequence	69516..69657																																																																	
GCA_032683525.1_PDT001791461.1_genomic.fna	Salmonella_enterica	0.5208	490.139 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUSY010000001.1 Salmonella enterica strain PNUSAS359084 SAMN35998428-rid18565593.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUSY010000021.1 Salmonella enterica strain PNUSAS359084 SAMN35998428-rid18565593.guided.13, whole genome shotgun sequence	27571..28008	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUSY010000012.1 Salmonella enterica strain PNUSAS359084 SAMN35998428-rid18565593.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNUSY010000012.1 Salmonella enterica strain PNUSAS359084 SAMN35998428-rid18565593.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNUSY010000002.1	585348..586217	99.54	870	0						
GCA_032683535.1_PDT001791462.1_genomic.fna	Salmonella_enterica	0.5205	720.129 KB	2	aroC_4,dnaN_164,hemD_134,hisD_195,purE_132,sucA_46,thrA_158	544	8:z10:z6	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_4	dnaN	100	100	dnaN_164	hemD	100	100	hemD_134	hisD	100	100	hisD_195	purE	100	100	purE_132	sucA	100	100	sucA_46	thrA	100	100	thrA_158	8	z10	z6	Salmonella enterica subspecies enterica (subspecies I)	Molade or Wippra	The predicted serotypes share the same general formula: 8:z10:z6 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNUSW010000001.1 Salmonella enterica strain PNUSAS359094 SAMN35998405-rid18565603.denovo.01, whole genome shotgun sequence	1414485..1414922	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNUSW010000021.1 Salmonella enterica strain PNUSAS359094 SAMN35998405-rid18565603.guided.08, whole genome shotgun sequence	16454..16891	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNUSW010000003.1 Salmonella enterica strain PNUSAS359094 SAMN35998405-rid18565603.denovo.03, whole genome shotgun sequence	401765..402187	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNUSW010000023.1 Salmonella enterica strain PNUSAS359094 SAMN35998405-rid18565603.guided.15, whole genome shotgun sequence	18541..18963	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNUSW010000015.1 Salmonella enterica strain PNUSAS359094 SAMN35998405-rid18565603.denovo.19, whole genome shotgun sequence	1708..1838																																																						avrA	ABNUSW010000002.1	151355..152224	99.195	870	0						
GCA_032683605.1_PDT001791457.1_genomic.fna	Salmonella_enterica	0.5202	478.725 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUTA010000001.1 Salmonella enterica strain PNUSAS359089 SAMN35998425-rid18565573.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUTA010000020.1 Salmonella enterica strain PNUSAS359089 SAMN35998425-rid18565573.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNUTA010000012.1 Salmonella enterica strain PNUSAS359089 SAMN35998425-rid18565573.denovo.14, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNUTA010000012.1 Salmonella enterica strain PNUSAS359089 SAMN35998425-rid18565573.denovo.14, whole genome shotgun sequence	53092..53353		enterobacteriales	IncX1	98.93	374 / 374	ABNUTA010000014.1 Salmonella enterica strain PNUSAS359089 SAMN35998425-rid18565573.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNUTA010000002.1	553486..554355	99.54	870	0						
GCA_032683625.1_PDT001791456.1_genomic.fna	Salmonella_enterica	0.5198	234.357 KB	6	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(pCRY),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNUTB010000003.1 Salmonella enterica strain PNUSAS359096 SAMN35998404-rid18565563.denovo.03, whole genome shotgun sequence	381796..382233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNUTB010000078.1 Salmonella enterica strain PNUSAS359096 SAMN35998404-rid18565563.guided.20, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNUTB010000021.1 Salmonella enterica strain PNUSAS359096 SAMN35998404-rid18565563.denovo.23, whole genome shotgun sequence	12646..13288	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNUTB010000027.1 Salmonella enterica strain PNUSAS359096 SAMN35998404-rid18565563.denovo.29, whole genome shotgun sequence	21066..21658		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNUTB010000018.1 Salmonella enterica strain PNUSAS359096 SAMN35998404-rid18565563.denovo.18, whole genome shotgun sequence	65761..65902																																									avrA	ABNUTB010000009.1	140559..141427	99.425	870	0						
GCA_032683645.1_PDT001791454.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUTD010000001.1 Salmonella enterica strain PNUSAS359102 SAMN35998414-rid18565553.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUTD010000023.1 Salmonella enterica strain PNUSAS359102 SAMN35998414-rid18565553.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUTD010000013.1 Salmonella enterica strain PNUSAS359102 SAMN35998414-rid18565553.denovo.15, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNUTD010000015.1 Salmonella enterica strain PNUSAS359102 SAMN35998414-rid18565553.denovo.18, whole genome shotgun sequence	3397..3658																																																avrA	ABNUTD010000008.1	175197..176066	99.54	870	0						
GCA_032683745.1_PDT001791440.1_genomic.fna	Salmonella_enterica	0.521	521.579 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNUTL010000001.1 Salmonella enterica strain PNUSAS359087 SAMN35998418-rid18565183.denovo.01, whole genome shotgun sequence	779752..780189	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNUTL010000023.1 Salmonella enterica strain PNUSAS359087 SAMN35998418-rid18565183.guided.15, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNUTL010000018.1 Salmonella enterica strain PNUSAS359087 SAMN35998418-rid18565183.denovo.21, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNUTL010000025.1 Salmonella enterica strain PNUSAS359087 SAMN35998418-rid18565183.guided.23, whole genome shotgun sequence	533..1177	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNUTL010000016.1 Salmonella enterica strain PNUSAS359087 SAMN35998418-rid18565183.denovo.19, whole genome shotgun sequence	239..369	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNUTL010000018.1 Salmonella enterica strain PNUSAS359087 SAMN35998418-rid18565183.denovo.21, whole genome shotgun sequence	1522..1652		enterobacteriales	Col440I	93.64	110 / 114	ABNUTL010000019.1 Salmonella enterica strain PNUSAS359087 SAMN35998418-rid18565183.denovo.22, whole genome shotgun sequence	1566..1675																																									avrA	ABNUTL010000005.1	169705..170574	99.425	870	0						
GCA_032683765.1_PDT001791449.1_genomic.fna	Salmonella_enterica	0.5221	723.706 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	10	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrB19,qnrA1,qnrB19,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col440I,IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUTG010000001.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.denovo.01, whole genome shotgun sequence	149984..150421	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNUTG010000021.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.denovo.26, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNUTG010000031.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.guided.11, whole genome shotgun sequence	9768..10205	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNUTG010000035.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.guided.25, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNUTG010000021.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.denovo.26, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNUTG010000035.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.guided.25, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNUTG010000018.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.denovo.21, whole genome shotgun sequence	6582..7487	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNUTG010000034.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.guided.22, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNUTG010000017.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.denovo.20, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNUTG010000036.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.guided.29, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNUTG010000021.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.denovo.26, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrB19	100	645/645	ABNUTG010000024.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.denovo.31, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrA1	100	657/657	ABNUTG010000035.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.guided.25, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	qnrB19	100	645/645	ABNUTG010000038.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.guided.33, whole genome shotgun sequence	606..1250	Ciprofloxacin	EU432277	sul1	100	840/840	ABNUTG010000018.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.denovo.21, whole genome shotgun sequence	432..1271	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUTG010000039.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.guided.34, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNUTG010000017.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.denovo.20, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNUTG010000037.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.guided.30, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNUTG010000017.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.denovo.20, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNUTG010000037.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.guided.30, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNUTG010000020.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.denovo.24, whole genome shotgun sequence	1164..1294	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNUTG010000024.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.denovo.31, whole genome shotgun sequence	1150..1280		enterobacteriales	Col440I	90.2	102 / 114	ABNUTG010000038.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.guided.33, whole genome shotgun sequence	1..102		enterobacteriales	IncR	100	251 / 251	ABNUTG010000014.1 Salmonella enterica strain PNUSAS359101 SAMN35998424-rid18565523.denovo.17, whole genome shotgun sequence	4434..4684																																		avrA	ABNUTG010000003.1	553345..554214	99.77	870	0						
GCA_032683805.1_PDT001791442.1_genomic.fna	Salmonella_enterica	0.5213	489.739 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUTJ010000001.1 Salmonella enterica strain PNUSAS359085 SAMN35998435-rid18565483.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUTJ010000025.1 Salmonella enterica strain PNUSAS359085 SAMN35998435-rid18565483.guided.18, whole genome shotgun sequence	3270..3707	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUTJ010000012.1 Salmonella enterica strain PNUSAS359085 SAMN35998435-rid18565483.denovo.12, whole genome shotgun sequence	40542..41184	enterobacteriales	IncFII(S)	100	262 / 262	ABNUTJ010000015.1 Salmonella enterica strain PNUSAS359085 SAMN35998435-rid18565483.denovo.16, whole genome shotgun sequence	3397..3658																																																avrA	ABNUTJ010000002.1	553187..554056	99.54	870	0						
GCA_032683825.1_PDT001791436.1_genomic.fna	Salmonella_enterica	0.522	376.41 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUTN010000002.1 Salmonella enterica strain PNUSAS359093 SAMN35998407-rid18565453.denovo.02, whole genome shotgun sequence	207388..207825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUTN010000045.1 Salmonella enterica strain PNUSAS359093 SAMN35998407-rid18565453.guided.31, whole genome shotgun sequence	5795..6232	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUTN010000015.1 Salmonella enterica strain PNUSAS359093 SAMN35998407-rid18565453.denovo.15, whole genome shotgun sequence	36050..36692	enterobacteriales	IncFII(S)	100	262 / 262	ABNUTN010000015.1 Salmonella enterica strain PNUSAS359093 SAMN35998407-rid18565453.denovo.15, whole genome shotgun sequence	51777..52038																																																avrA	ABNUTN010000001.1	450786..451655	99.885	870	0						
GCA_032683845.1_PDT001791439.1_genomic.fna	Salmonella_enterica	0.5201	368.135 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUTK010000001.1 Salmonella enterica strain PNUSAS359100 SAMN35998401-rid18565463.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUTK010000036.1 Salmonella enterica strain PNUSAS359100 SAMN35998401-rid18565463.guided.26, whole genome shotgun sequence	547..984	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNUTK010000005.1 Salmonella enterica strain PNUSAS359100 SAMN35998401-rid18565463.denovo.05, whole genome shotgun sequence	27818..28240	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNUTK010000034.1 Salmonella enterica strain PNUSAS359100 SAMN35998401-rid18565463.guided.24, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUTK010000002.1	203779..204648	99.195	870	0						
GCA_032683885.1_PDT001791434.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUTP010000001.1 Salmonella enterica strain PNUSAS359090 SAMN35998434-rid18565443.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUTP010000021.1 Salmonella enterica strain PNUSAS359090 SAMN35998434-rid18565443.guided.11, whole genome shotgun sequence	42771..43208	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNUTP010000017.1 Salmonella enterica strain PNUSAS359090 SAMN35998434-rid18565443.denovo.20, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUTP010000012.1 Salmonella enterica strain PNUSAS359090 SAMN35998434-rid18565443.denovo.13, whole genome shotgun sequence	49285..49927		enterobacteriales	IncFII(S)	100	262 / 262	ABNUTP010000012.1 Salmonella enterica strain PNUSAS359090 SAMN35998434-rid18565443.denovo.13, whole genome shotgun sequence	5032..5293																																									avrA	ABNUTP010000002.1	553636..554505	99.54	870	0						
GCA_032683985.1_PDT001791424.1_genomic.fna	Salmonella_enterica	0.521	524.859 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncR,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUTS010000001.1 Salmonella enterica strain PNUSAS358948 SAMN35996155-rid18565383.denovo.01, whole genome shotgun sequence	150017..150454	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUTS010000029.1 Salmonella enterica strain PNUSAS358948 SAMN35996155-rid18565383.guided.12, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNUTS010000020.1 Salmonella enterica strain PNUSAS358948 SAMN35996155-rid18565383.denovo.23, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNUTS010000032.1 Salmonella enterica strain PNUSAS358948 SAMN35996155-rid18565383.guided.25, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNUTS010000020.1 Salmonella enterica strain PNUSAS358948 SAMN35996155-rid18565383.denovo.23, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNUTS010000033.1 Salmonella enterica strain PNUSAS358948 SAMN35996155-rid18565383.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNUTS010000020.1 Salmonella enterica strain PNUSAS358948 SAMN35996155-rid18565383.denovo.23, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUTS010000032.1 Salmonella enterica strain PNUSAS358948 SAMN35996155-rid18565383.guided.25, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNUTS010000020.1 Salmonella enterica strain PNUSAS358948 SAMN35996155-rid18565383.denovo.23, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNUTS010000032.1 Salmonella enterica strain PNUSAS358948 SAMN35996155-rid18565383.guided.25, whole genome shotgun sequence	9840..11114	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNUTS010000020.1 Salmonella enterica strain PNUSAS358948 SAMN35996155-rid18565383.denovo.23, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNUTS010000032.1 Salmonella enterica strain PNUSAS358948 SAMN35996155-rid18565383.guided.25, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNUTS010000019.1 Salmonella enterica strain PNUSAS358948 SAMN35996155-rid18565383.denovo.22, whole genome shotgun sequence	4434..4684	enterobacteriales	IncX1	99.2	377 / 377	ABNUTS010000012.1 Salmonella enterica strain PNUSAS358948 SAMN35996155-rid18565383.denovo.15, whole genome shotgun sequence	8926..9302																																																avrA	ABNUTS010000002.1	553473..554342	99.77	870	0						
GCA_032684135.1_PDT001791409.1_genomic.fna	Salmonella_enterica	0.5211	724.311 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15!,purE_15!,sucA_20,thrA_12	Unknown	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncR,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15!	purE	100	100	purE_15!	sucA	100	100	sucA_20	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUUB010000001.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.denovo.01, whole genome shotgun sequence	638994..639431	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNUUB010000021.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.denovo.26, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNUUB010000031.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.guided.13, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNUUB010000033.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.guided.25, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNUUB010000021.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.denovo.26, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNUUB010000033.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.guided.25, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNUUB010000019.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.denovo.23, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNUUB010000032.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.guided.22, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.11	1214/1215	ABNUUB010000018.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.denovo.21, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNUUB010000034.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNUUB010000021.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.denovo.26, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNUUB010000033.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.guided.25, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNUUB010000024.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.denovo.32, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUUB010000036.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.guided.31, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNUUB010000018.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.denovo.21, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNUUB010000035.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.guided.28, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNUUB010000018.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.denovo.21, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNUUB010000035.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.guided.28, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNUUB010000015.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.denovo.18, whole genome shotgun sequence	4434..4684	enterobacteriales	IncX1	94.92	374 / 374	ABNUUB010000012.1 Salmonella enterica strain PNUSAS358955 SAMN35996160-rid18565283.denovo.15, whole genome shotgun sequence	13796..14169																																																avrA	ABNUUB010000002.1	585455..586324	99.77	870	0						
GCA_032684185.1_PDT001791353.1_genomic.fna	Salmonella_enterica	0.5218	758.526 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUUD010000001.1 Salmonella enterica strain PNUSAS358960 SAMN35996119-rid18564793.denovo.01, whole genome shotgun sequence	566669..567106	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUUD010000024.1 Salmonella enterica strain PNUSAS358960 SAMN35996119-rid18564793.guided.12, whole genome shotgun sequence	40587..41024	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNUUD010000004.1	553640..554509	99.655	870	0						
GCA_032684225.1_PDT001791337.1_genomic.fna	Salmonella_enterica	0.5214	489.886 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUUH010000001.1 Salmonella enterica strain PNUSAS358944 SAMN35996158-rid18564663.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUUH010000022.1 Salmonella enterica strain PNUSAS358944 SAMN35996158-rid18564663.guided.17, whole genome shotgun sequence	2113..2550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUUH010000012.1 Salmonella enterica strain PNUSAS358944 SAMN35996158-rid18564663.denovo.12, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNUUH010000014.1 Salmonella enterica strain PNUSAS358944 SAMN35996158-rid18564663.denovo.15, whole genome shotgun sequence	3446..3707																																																avrA	ABNUUH010000002.1	553505..554374	99.54	870	0						
GCA_032684285.1_PDT001791334.1_genomic.fna	Salmonella_enterica	0.5213	489.739 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUUK010000001.1 Salmonella enterica strain PNUSAS358956 SAMN35996116-rid18564643.denovo.01, whole genome shotgun sequence	533607..534044	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUUK010000025.1 Salmonella enterica strain PNUSAS358956 SAMN35996116-rid18564643.guided.16, whole genome shotgun sequence	9039..9476	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUUK010000013.1 Salmonella enterica strain PNUSAS358956 SAMN35996116-rid18564643.denovo.13, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNUUK010000013.1 Salmonella enterica strain PNUSAS358956 SAMN35996116-rid18564643.denovo.13, whole genome shotgun sequence	4416..4677																																																avrA	ABNUUK010000002.1	553175..554044	99.54	870	0						
GCA_032684325.1_PDT001791332.1_genomic.fna	Salmonella_enterica	0.5213	507.334 KB	3	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUUJ010000001.1 Salmonella enterica strain PNUSAS358953 SAMN35996157-rid18564623.denovo.01, whole genome shotgun sequence	498175..498612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUUJ010000019.1 Salmonella enterica strain PNUSAS358953 SAMN35996157-rid18564623.guided.14, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUUJ010000003.1	159706..160575	98.966	870	0						
GCA_032684345.1_PDT001791329.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUUM010000001.1 Salmonella enterica strain PNUSAS358958 SAMN35996154-rid18564603.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUUM010000022.1 Salmonella enterica strain PNUSAS358958 SAMN35996154-rid18564603.guided.13, whole genome shotgun sequence	6409..6846	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUUM010000012.1 Salmonella enterica strain PNUSAS358958 SAMN35996154-rid18564603.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNUUM010000012.1 Salmonella enterica strain PNUSAS358958 SAMN35996154-rid18564603.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABNUUM010000002.1	553636..554505	99.54	870	0						
GCA_032684365.1_PDT001791331.1_genomic.fna	Salmonella_enterica	0.5213	546.495 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNUUL010000001.1 Salmonella enterica strain PNUSAS358961 SAMN35996162-rid18564613.denovo.01, whole genome shotgun sequence	422159..422596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNUUL010000025.1 Salmonella enterica strain PNUSAS358961 SAMN35996162-rid18564613.guided.12, whole genome shotgun sequence	3666..4103	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUUL010000003.1	395125..395993	99.425	870	0						
GCA_032684385.1_PDT001791322.1_genomic.fna	Salmonella_enterica	0.5225	333.003 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNUUN010000001.1 Salmonella enterica strain PNUSAS358954 SAMN35996151-rid18564553.denovo.01, whole genome shotgun sequence	622355..622792	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNUUN010000031.1 Salmonella enterica strain PNUSAS358954 SAMN35996151-rid18564553.guided.21, whole genome shotgun sequence	19788..20225	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUUN010000006.1	149818..150687	99.655	870	0						
GCA_032684405.1_PDT001791327.1_genomic.fna	Salmonella_enterica	0.5215	345.656 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUUO010000003.1 Salmonella enterica strain PNUSAS358964 SAMN35996159-rid18564993.denovo.03, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUUO010000044.1 Salmonella enterica strain PNUSAS358964 SAMN35996159-rid18564993.guided.33, whole genome shotgun sequence	495..932	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUUO010000016.1 Salmonella enterica strain PNUSAS358964 SAMN35996159-rid18564993.denovo.16, whole genome shotgun sequence	48427..49069	enterobacteriales	IncFII(S)	100	262 / 262	ABNUUO010000016.1 Salmonella enterica strain PNUSAS358964 SAMN35996159-rid18564993.denovo.16, whole genome shotgun sequence	64154..64415		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNUUO010000018.1 Salmonella enterica strain PNUSAS358964 SAMN35996159-rid18564993.denovo.18, whole genome shotgun sequence	69987..70128																																									avrA	ABNUUO010000004.1	209589..210457	100	869	0						
GCA_032684545.1_PDT001791297.1_genomic.fna	Salmonella_enterica	0.5214	301.752 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNUUY010000003.1 Salmonella enterica strain PNUSAS358962 SAMN35996147-rid18564353.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNUUY010000033.1 Salmonella enterica strain PNUSAS358962 SAMN35996147-rid18564353.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUUY010000016.1 Salmonella enterica strain PNUSAS358962 SAMN35996147-rid18564353.denovo.17, whole genome shotgun sequence	44751..45393	enterobacteriales	IncFII(S)	100	262 / 262	ABNUUY010000016.1 Salmonella enterica strain PNUSAS358962 SAMN35996147-rid18564353.denovo.17, whole genome shotgun sequence	29405..29666																																																avrA	ABNUUY010000005.1	175018..175886	100	869	0						
GCA_032684565.1_PDT001791299.1_genomic.fna	Salmonella_enterica	0.5195	279.661 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	Col(pHAD28),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUUW010000001.1 Salmonella enterica strain PNUSAS358966 SAMN35996161-rid18564373.denovo.01, whole genome shotgun sequence	591136..591573	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUUW010000038.1 Salmonella enterica strain PNUSAS358966 SAMN35996161-rid18564373.denovo.43, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUUW010000038.1 Salmonella enterica strain PNUSAS358966 SAMN35996161-rid18564373.denovo.43, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNUUW010000053.1 Salmonella enterica strain PNUSAS358966 SAMN35996161-rid18564373.guided.13, whole genome shotgun sequence	5436..5873	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUUW010000057.1 Salmonella enterica strain PNUSAS358966 SAMN35996161-rid18564373.guided.42, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUUW010000057.1 Salmonella enterica strain PNUSAS358966 SAMN35996161-rid18564373.guided.42, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNUUW010000043.1 Salmonella enterica strain PNUSAS358966 SAMN35996161-rid18564373.denovo.48, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNUUW010000058.1 Salmonella enterica strain PNUSAS358966 SAMN35996161-rid18564373.guided.49, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNUUW010000038.1 Salmonella enterica strain PNUSAS358966 SAMN35996161-rid18564373.denovo.43, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNUUW010000057.1 Salmonella enterica strain PNUSAS358966 SAMN35996161-rid18564373.guided.42, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	99.92	1206/1206	ABNUUW010000032.1 Salmonella enterica strain PNUSAS358966 SAMN35996161-rid18564373.denovo.34, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABNUUW010000056.1 Salmonella enterica strain PNUSAS358966 SAMN35996161-rid18564373.guided.37, whole genome shotgun sequence	1678..2883	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNUUW010000040.1 Salmonella enterica strain PNUSAS358966 SAMN35996161-rid18564373.denovo.45, whole genome shotgun sequence	1861..1991	enterobacteriales	IncX1	98.66	374 / 374	ABNUUW010000029.1 Salmonella enterica strain PNUSAS358966 SAMN35996161-rid18564373.denovo.30, whole genome shotgun sequence	6956..7329																																																avrA	ABNUUW010000002.1	589500..590369	99.885	870	0						
GCA_032684585.1_PDT001791300.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUUV010000001.1 Salmonella enterica strain PNUSAS358959 SAMN35996156-rid18564933.denovo.01, whole genome shotgun sequence	501525..501962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUUV010000027.1 Salmonella enterica strain PNUSAS358959 SAMN35996156-rid18564933.guided.20, whole genome shotgun sequence	3198..3635	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUUV010000014.1 Salmonella enterica strain PNUSAS358959 SAMN35996156-rid18564933.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNUUV010000017.1 Salmonella enterica strain PNUSAS358959 SAMN35996156-rid18564933.denovo.18, whole genome shotgun sequence	3407..3668																																																avrA	ABNUUV010000002.1	553636..554505	99.54	870	0						
GCA_032684605.1_PDT001791298.1_genomic.fna	Salmonella_enterica	0.5221	723.705 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUUX010000001.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.denovo.01, whole genome shotgun sequence	638888..639325	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNUUX010000020.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.denovo.25, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNUUX010000029.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.guided.12, whole genome shotgun sequence	1780..2217	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNUUX010000032.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.guided.24, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNUUX010000020.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.denovo.25, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNUUX010000032.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.guided.24, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNUUX010000018.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.denovo.22, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNUUX010000031.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.guided.21, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNUUX010000017.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.denovo.20, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNUUX010000033.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.guided.26, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNUUX010000020.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.denovo.25, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNUUX010000032.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.guided.24, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNUUX010000022.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.denovo.30, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUUX010000035.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.guided.29, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNUUX010000017.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.denovo.20, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNUUX010000034.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.guided.27, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNUUX010000017.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.denovo.20, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNUUX010000034.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.guided.27, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNUUX010000014.1 Salmonella enterica strain PNUSAS358965 SAMN35996153-rid18564363.denovo.17, whole genome shotgun sequence	4434..4684																																																						avrA	ABNUUX010000002.1	553474..554343	99.77	870	0						
GCA_032684625.1_PDT001791296.1_genomic.fna	Salmonella_enterica	0.5202	430.002 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUUZ010000001.1 Salmonella enterica strain PNUSAS358946 SAMN35996150-rid18564343.denovo.01, whole genome shotgun sequence	645268..645705	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUUZ010000021.1 Salmonella enterica strain PNUSAS358946 SAMN35996150-rid18564343.guided.12, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUUZ010000009.1	181854..182722	99.195	870	0						
GCA_032684645.1_PDT001791295.1_genomic.fna	Salmonella_enterica	0.5216	532.236 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUVA010000001.1 Salmonella enterica strain PNUSAS358947 SAMN35996146-rid18564923.denovo.01, whole genome shotgun sequence	789459..789896	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUVA010000024.1 Salmonella enterica strain PNUSAS358947 SAMN35996146-rid18564923.guided.12, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUVA010000002.1	147026..147895	98.966	870	0						
GCA_032684665.1_PDT001791294.1_genomic.fna	Salmonella_enterica	0.5214	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUVB010000001.1 Salmonella enterica strain PNUSAS358952 SAMN35996149-rid18564333.denovo.01, whole genome shotgun sequence	493020..493457	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUVB010000024.1 Salmonella enterica strain PNUSAS358952 SAMN35996149-rid18564333.guided.16, whole genome shotgun sequence	8854..9291	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNUVB010000013.1 Salmonella enterica strain PNUSAS358952 SAMN35996149-rid18564333.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNUVB010000017.1 Salmonella enterica strain PNUSAS358952 SAMN35996149-rid18564333.denovo.20, whole genome shotgun sequence	3429..3690																																																avrA	ABNUVB010000002.1	553499..554368	99.54	870	0						
GCA_032684685.1_PDT001791292.1_genomic.fna	Salmonella_enterica	0.521	489.853 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUVD010000001.1 Salmonella enterica strain PNUSAS358957 SAMN35996115-rid18564323.denovo.01, whole genome shotgun sequence	798017..798454	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUVD010000023.1 Salmonella enterica strain PNUSAS358957 SAMN35996115-rid18564323.guided.12, whole genome shotgun sequence	16325..16762	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUVD010000012.1 Salmonella enterica strain PNUSAS358957 SAMN35996115-rid18564323.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNUVD010000015.1 Salmonella enterica strain PNUSAS358957 SAMN35996115-rid18564323.denovo.17, whole genome shotgun sequence	3446..3707																																																avrA	ABNUVD010000002.1	553004..553873	99.54	870	0						
GCA_032684705.1_PDT001791293.1_genomic.fna	Salmonella_enterica	0.5214	723.695 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncR,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUVC010000001.1 Salmonella enterica strain PNUSAS358945 SAMN35996148-rid18564913.denovo.01, whole genome shotgun sequence	172127..172564	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUVC010000029.1 Salmonella enterica strain PNUSAS358945 SAMN35996148-rid18564913.guided.22, whole genome shotgun sequence	10091..10528	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNUVC010000017.1 Salmonella enterica strain PNUSAS358945 SAMN35996148-rid18564913.denovo.19, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNUVC010000028.1 Salmonella enterica strain PNUSAS358945 SAMN35996148-rid18564913.guided.21, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNUVC010000017.1 Salmonella enterica strain PNUSAS358945 SAMN35996148-rid18564913.denovo.19, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNUVC010000030.1 Salmonella enterica strain PNUSAS358945 SAMN35996148-rid18564913.guided.25, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNUVC010000017.1 Salmonella enterica strain PNUSAS358945 SAMN35996148-rid18564913.denovo.19, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNUVC010000028.1 Salmonella enterica strain PNUSAS358945 SAMN35996148-rid18564913.guided.21, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNUVC010000017.1 Salmonella enterica strain PNUSAS358945 SAMN35996148-rid18564913.denovo.19, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNUVC010000028.1 Salmonella enterica strain PNUSAS358945 SAMN35996148-rid18564913.guided.21, whole genome shotgun sequence	9840..11114	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNUVC010000017.1 Salmonella enterica strain PNUSAS358945 SAMN35996148-rid18564913.denovo.19, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNUVC010000028.1 Salmonella enterica strain PNUSAS358945 SAMN35996148-rid18564913.guided.21, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNUVC010000016.1 Salmonella enterica strain PNUSAS358945 SAMN35996148-rid18564913.denovo.18, whole genome shotgun sequence	4434..4684	enterobacteriales	IncX1	99.2	377 / 377	ABNUVC010000011.1 Salmonella enterica strain PNUSAS358945 SAMN35996148-rid18564913.denovo.11, whole genome shotgun sequence	8926..9302																																																avrA	ABNUVC010000003.1	553473..554342	99.77	870	0						
GCA_032684725.1_PDT001791290.1_genomic.fna	Salmonella_enterica	0.5213	341.181 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUVI010000002.1 Salmonella enterica strain PNUSAS358951 SAMN35996121-rid18564903.denovo.02, whole genome shotgun sequence	207376..207813	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNUVI010000048.1 Salmonella enterica strain PNUSAS358951 SAMN35996121-rid18564903.guided.13, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNUVI010000017.1 Salmonella enterica strain PNUSAS358951 SAMN35996121-rid18564903.denovo.18, whole genome shotgun sequence	36051..36693	enterobacteriales	IncFII(S)	100	262 / 262	ABNUVI010000017.1 Salmonella enterica strain PNUSAS358951 SAMN35996121-rid18564903.denovo.18, whole genome shotgun sequence	51778..52039																																																avrA	ABNUVI010000001.1	450786..451655	99.885	870	0						
GCA_032684765.1_PDT001791288.1_genomic.fna	Salmonella_enterica	0.5202	368.134 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUVH010000001.1 Salmonella enterica strain PNUSAS358967 SAMN35996117-rid18564893.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUVH010000035.1 Salmonella enterica strain PNUSAS358967 SAMN35996117-rid18564893.guided.26, whole genome shotgun sequence	12072..12509	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNUVH010000005.1 Salmonella enterica strain PNUSAS358967 SAMN35996117-rid18564893.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNUVH010000037.1 Salmonella enterica strain PNUSAS358967 SAMN35996117-rid18564893.guided.29, whole genome shotgun sequence	2760..3182	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUVH010000002.1	173924..174793	99.195	870	0						
GCA_032684785.1_PDT001791289.1_genomic.fna	Salmonella_enterica	0.5215	758.526 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNUVF010000001.1 Salmonella enterica strain PNUSAS358950 SAMN35996118-rid18564303.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNUVF010000023.1 Salmonella enterica strain PNUSAS358950 SAMN35996118-rid18564303.guided.10, whole genome shotgun sequence	24295..24732	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNUVF010000004.1	553640..554509	99.655	870	0						
GCA_032686725.1_PDT001791178.1_genomic.fna	Salmonella_enterica	0.5211	305.026 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUYY010000003.1 Salmonella enterica strain PNUSAS358604 SAMN35995628-rid18563203.denovo.03, whole genome shotgun sequence	162554..162991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUYY010000041.1 Salmonella enterica strain PNUSAS358604 SAMN35995628-rid18563203.guided.31, whole genome shotgun sequence	262..699	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNUYY010000021.1 Salmonella enterica strain PNUSAS358604 SAMN35995628-rid18563203.denovo.21, whole genome shotgun sequence	16151..16793	enterobacteriales	IncFII(S)	100	262 / 262	ABNUYY010000020.1 Salmonella enterica strain PNUSAS358604 SAMN35995628-rid18563203.denovo.20, whole genome shotgun sequence	3859..4120		enterobacteriales	IncX1	98.66	374 / 374	ABNUYY010000023.1 Salmonella enterica strain PNUSAS358604 SAMN35995628-rid18563203.denovo.24, whole genome shotgun sequence	4077..4450																																									avrA	ABNUYY010000004.1	140715..141584	99.54	870	0						
GCA_032686845.1_PDT001791169.1_genomic.fna	Salmonella_enterica	0.5224	447.164 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUZH010000001.1 Salmonella enterica strain PNUSAS358595 SAMN35995615-rid18563123.denovo.01, whole genome shotgun sequence	153842..154279	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUZH010000028.1 Salmonella enterica strain PNUSAS358595 SAMN35995615-rid18563123.guided.21, whole genome shotgun sequence	4494..4931	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032686865.1_PDT001791172.1_genomic.fna	Salmonella_enterica	0.5211	476.918 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUZG010000001.1 Salmonella enterica strain PNUSAS358583 SAMN35995629-rid18563153.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUZG010000027.1 Salmonella enterica strain PNUSAS358583 SAMN35995629-rid18563153.guided.20, whole genome shotgun sequence	17917..18354	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUZG010000016.1 Salmonella enterica strain PNUSAS358583 SAMN35995629-rid18563153.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNUZG010000016.1 Salmonella enterica strain PNUSAS358583 SAMN35995629-rid18563153.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNUZG010000002.1	553077..553946	99.54	870	0						
GCA_032686885.1_PDT001791173.1_genomic.fna	Salmonella_enterica	0.5202	435.323 KB	5	aroC_104,dnaN_100,hemD_54,hisD_78,purE_104,sucA_9,thrA_48	292	8:z4,z24:-	6	aac(6')-Iaa,aac(6')-Iaa,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G),dfrA1,dfrA1	2	gyrA_p.S83F,parC_p.T57S	2	IncI1-I(Alpha),IncX1	aroC	100	100	aroC_104	dnaN	100	100	dnaN_100	hemD	100	100	hemD_54	hisD	100	100	hisD_78	purE	100	100	purE_104	sucA	100	100	sucA_9	thrA	100	100	thrA_48	8	z4,z24	-	Salmonella enterica subspecies enterica (subspecies I)	Albany or Duesseldorf	The predicted serotypes share the same general formula: 8:z4,z24:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUZF010000001.1 Salmonella enterica strain PNUSAS358606 SAMN35995613-rid18563163.denovo.01, whole genome shotgun sequence	480339..480776	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUZF010000040.1 Salmonella enterica strain PNUSAS358606 SAMN35995613-rid18563163.guided.23, whole genome shotgun sequence	4197..4634	Amikacin, Tobramycin	NC_003197	blaCARB-2	100	867/867	ABNUZF010000021.1 Salmonella enterica strain PNUSAS358606 SAMN35995613-rid18563163.denovo.24, whole genome shotgun sequence	105..971	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNUZF010000044.1 Salmonella enterica strain PNUSAS358606 SAMN35995613-rid18563163.guided.33, whole genome shotgun sequence	107..973	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNUZF010000021.1 Salmonella enterica strain PNUSAS358606 SAMN35995613-rid18563163.denovo.24, whole genome shotgun sequence	6605..7819	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNUZF010000041.1 Salmonella enterica strain PNUSAS358606 SAMN35995613-rid18563163.guided.26, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNUZF010000042.1 Salmonella enterica strain PNUSAS358606 SAMN35995613-rid18563163.guided.29, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNUZF010000021.1 Salmonella enterica strain PNUSAS358606 SAMN35995613-rid18563163.denovo.24, whole genome shotgun sequence	4493..5668	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNUZF010000041.1 Salmonella enterica strain PNUSAS358606 SAMN35995613-rid18563163.guided.26, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140	dfrA1	100	474/474	ABNUZF010000015.1 Salmonella enterica strain PNUSAS358606 SAMN35995613-rid18563163.denovo.15, whole genome shotgun sequence	58257..58730	Trimethoprim	X00926	dfrA1	100	474/474	ABNUZF010000043.1 Salmonella enterica strain PNUSAS358606 SAMN35995613-rid18563163.guided.32, whole genome shotgun sequence	58..531	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																											gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNUZF010000014.1 Salmonella enterica strain PNUSAS358606 SAMN35995613-rid18563163.denovo.14, whole genome shotgun sequence	66668..66809	enterobacteriales	IncX1	98.93	374 / 374	ABNUZF010000020.1 Salmonella enterica strain PNUSAS358606 SAMN35995613-rid18563163.denovo.20, whole genome shotgun sequence	772..1145																																																avrA	ABNUZF010000007.1	39134..40003	99.08	870	0						
GCA_032686905.1_PDT001791171.1_genomic.fna	Salmonella_enterica	0.5208	238.802 KB	9	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	Col156,IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUZJ010000002.1 Salmonella enterica strain PNUSAS358596 SAMN35995621-rid18563143.denovo.02, whole genome shotgun sequence	145234..145671	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUZJ010000041.1 Salmonella enterica strain PNUSAS358596 SAMN35995621-rid18563143.denovo.46, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUZJ010000041.1 Salmonella enterica strain PNUSAS358596 SAMN35995621-rid18563143.denovo.46, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNUZJ010000053.1 Salmonella enterica strain PNUSAS358596 SAMN35995621-rid18563143.guided.36, whole genome shotgun sequence	3518..3955	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUZJ010000056.1 Salmonella enterica strain PNUSAS358596 SAMN35995621-rid18563143.guided.45, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUZJ010000056.1 Salmonella enterica strain PNUSAS358596 SAMN35995621-rid18563143.guided.45, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNUZJ010000047.1 Salmonella enterica strain PNUSAS358596 SAMN35995621-rid18563143.denovo.53, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNUZJ010000057.1 Salmonella enterica strain PNUSAS358596 SAMN35995621-rid18563143.guided.51, whole genome shotgun sequence	560..1420	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNUZJ010000041.1 Salmonella enterica strain PNUSAS358596 SAMN35995621-rid18563143.denovo.46, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNUZJ010000056.1 Salmonella enterica strain PNUSAS358596 SAMN35995621-rid18563143.guided.45, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNUZJ010000034.1 Salmonella enterica strain PNUSAS358596 SAMN35995621-rid18563143.denovo.35, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNUZJ010000055.1 Salmonella enterica strain PNUSAS358596 SAMN35995621-rid18563143.guided.38, whole genome shotgun sequence	4024..5229	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col156	94.81	154 / 154	ABNUZJ010000044.1 Salmonella enterica strain PNUSAS358596 SAMN35995621-rid18563143.denovo.49, whole genome shotgun sequence	791..944	enterobacteriales	IncY	98.69	765 / 765	ABNUZJ010000019.1 Salmonella enterica strain PNUSAS358596 SAMN35995621-rid18563143.denovo.19, whole genome shotgun sequence	87539..88303																																																avrA	ABNUZJ010000012.1	93863..94732	99.885	870	0						
GCA_032686925.1_PDT001791170.1_genomic.fna	Salmonella_enterica	0.522	207.061 KB	8	aroC_339,dnaN_117,hemD_527,hisD_72,purE_44,sucA_320,thrA_196	3310	44:z10:1,7	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_339	dnaN	100	100	dnaN_117	hemD	100	100	hemD_527	hisD	100	100	hisD_72	purE	100	100	purE_44	sucA	100	100	sucA_320	thrA	100	100	thrA_196	44	z10	1,7	Salmonella enterica subspecies enterica (subspecies I)	Guinea		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUZI010000002.1 Salmonella enterica strain PNUSAS358587 SAMN35995623-rid18563133.denovo.02, whole genome shotgun sequence	372558..372995	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUZI010000049.1 Salmonella enterica strain PNUSAS358587 SAMN35995623-rid18563133.guided.31, whole genome shotgun sequence	527..964	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNUZI010000036.1 Salmonella enterica strain PNUSAS358587 SAMN35995623-rid18563133.denovo.41, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNUZI010000052.1 Salmonella enterica strain PNUSAS358587 SAMN35995623-rid18563133.guided.40, whole genome shotgun sequence	4226..4870	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNUZI010000036.1 Salmonella enterica strain PNUSAS358587 SAMN35995623-rid18563133.denovo.41, whole genome shotgun sequence	1519..1649	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNUZI010000052.1 Salmonella enterica strain PNUSAS358587 SAMN35995623-rid18563133.guided.40, whole genome shotgun sequence	3570..3700																																																avrA	ABNUZI010000004.1	140263..141132	99.08	870	0						
GCA_032686945.1_PDT001791168.1_genomic.fna	Salmonella_enterica	0.5211	226.152 KB	9	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUZK010000002.1 Salmonella enterica strain PNUSAS358605 SAMN35995626-rid18563113.denovo.02, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUZK010000047.1 Salmonella enterica strain PNUSAS358605 SAMN35995626-rid18563113.guided.32, whole genome shotgun sequence	21051..21488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNUZK010000024.1 Salmonella enterica strain PNUSAS358605 SAMN35995626-rid18563113.denovo.24, whole genome shotgun sequence	34958..35491																																																						avrA	ABNUZK010000009.1	188326..189195	99.54	870	0						
GCA_032686965.1_PDT001791166.1_genomic.fna	Salmonella_enterica	0.5213	476.57 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUZM010000001.1 Salmonella enterica strain PNUSAS358593 SAMN35995618-rid18563093.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUZM010000027.1 Salmonella enterica strain PNUSAS358593 SAMN35995618-rid18563093.guided.18, whole genome shotgun sequence	24087..24524	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUZM010000015.1 Salmonella enterica strain PNUSAS358593 SAMN35995618-rid18563093.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNUZM010000015.1 Salmonella enterica strain PNUSAS358593 SAMN35995618-rid18563093.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNUZM010000002.1	553077..553946	99.54	870	0						
GCA_032686985.1_PDT001791167.1_genomic.fna	Salmonella_enterica	0.5203	315.664 KB	4	aroC_50,dnaN_63,hemD_25,hisD_72,purE_59,sucA_292,thrA_63	1515	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFII(SARC14),IncFII(Yp),IncFII(p96A)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_63	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_59	sucA	100	100	sucA_292	thrA	100	100	thrA_63	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNUZL010000001.1 Salmonella enterica strain PNUSAS358610 SAMN35995607-rid18563103.denovo.01, whole genome shotgun sequence	500115..500552	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNUZL010000047.1 Salmonella enterica strain PNUSAS358610 SAMN35995607-rid18563103.guided.21, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	95.29	446 / 445	ABNUZL010000015.1 Salmonella enterica strain PNUSAS358610 SAMN35995607-rid18563103.denovo.15, whole genome shotgun sequence	14474..14918	enterobacteriales	IncFII(Yp)	91.67	216 / 230	ABNUZL010000015.1 Salmonella enterica strain PNUSAS358610 SAMN35995607-rid18563103.denovo.15, whole genome shotgun sequence	15179..15393		enterobacteriales	IncFII(p96A)	99.44	534 / 534	ABNUZL010000018.1 Salmonella enterica strain PNUSAS358610 SAMN35995607-rid18563103.denovo.18, whole genome shotgun sequence	15582..16115																																									avrA	ABNUZL010000002.1	552705..553574	99.425	870	0						
GCA_032687005.1_PDT001791165.1_genomic.fna	Salmonella_enterica	0.5212	478.496 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUZN010000001.1 Salmonella enterica strain PNUSAS358599 SAMN35995609-rid18564033.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUZN010000026.1 Salmonella enterica strain PNUSAS358599 SAMN35995609-rid18564033.guided.19, whole genome shotgun sequence	7136..7573	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUZN010000014.1 Salmonella enterica strain PNUSAS358599 SAMN35995609-rid18564033.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNUZN010000014.1 Salmonella enterica strain PNUSAS358599 SAMN35995609-rid18564033.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNUZN010000002.1	553291..554160	99.54	870	0						
GCA_032687025.1_PDT001791162.1_genomic.fna	Salmonella_enterica	0.5211	439.946 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUZP010000001.1 Salmonella enterica strain PNUSAS358725 SAMN35995261-rid18563063.denovo.01, whole genome shotgun sequence	1230992..1231429	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.3	432/438	ABNUZP010000024.1 Salmonella enterica strain PNUSAS358725 SAMN35995261-rid18563063.guided.18, whole genome shotgun sequence	1..432	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUZP010000013.1 Salmonella enterica strain PNUSAS358725 SAMN35995261-rid18563063.denovo.13, whole genome shotgun sequence	36763..37405	enterobacteriales	IncFII(S)	100	262 / 262	ABNUZP010000013.1 Salmonella enterica strain PNUSAS358725 SAMN35995261-rid18563063.denovo.13, whole genome shotgun sequence	42855..43116																																																avrA	ABNUZP010000002.1	553190..554059	99.54	870	0						
GCA_032687045.1_PDT001791160.1_genomic.fna	Salmonella_enterica	0.5213	490.132 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUZQ010000001.1 Salmonella enterica strain PNUSAS358737 SAMN35995249-rid18563053.denovo.01, whole genome shotgun sequence	774403..774840	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUZQ010000020.1 Salmonella enterica strain PNUSAS358737 SAMN35995249-rid18563053.guided.13, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUZQ010000008.1 Salmonella enterica strain PNUSAS358737 SAMN35995249-rid18563053.denovo.08, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNUZQ010000015.1 Salmonella enterica strain PNUSAS358737 SAMN35995249-rid18563053.denovo.18, whole genome shotgun sequence	3414..3675																																																avrA	ABNUZQ010000002.1	553490..554359	99.54	870	0						
GCA_032687065.1_PDT001791161.1_genomic.fna	Salmonella_enterica	0.5212	238.812 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,sul2,tet(B),tet(B),dfrA17,dfrA17	0		2	ColRNAI,IncFII	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNUZR010000001.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.denovo.01, whole genome shotgun sequence	82189..82626	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNUZR010000039.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.denovo.45, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUZR010000039.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.denovo.45, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNUZR010000050.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.guided.28, whole genome shotgun sequence	20661..21098	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	837/837	ABNUZR010000054.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.guided.43, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUZR010000054.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.guided.43, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNUZR010000055.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.guided.44, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNUZR010000055.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.guided.44, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNUZR010000044.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.denovo.52, whole genome shotgun sequence	128..988	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNUZR010000057.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.guided.51, whole genome shotgun sequence	69..929	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNUZR010000039.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.denovo.45, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNUZR010000054.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.guided.43, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNUZR010000055.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.guided.44, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNUZR010000032.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.denovo.36, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNUZR010000053.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.guided.35, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA17	100	474/474	ABNUZR010000031.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.denovo.34, whole genome shotgun sequence	11900..12373	Trimethoprim	FJ460238	dfrA17	100	474/474	ABNUZR010000056.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.guided.50, whole genome shotgun sequence	1575..2048	Trimethoprim	FJ460238																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	ColRNAI	90.08	131 / 130	ABNUZR010000038.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.denovo.42, whole genome shotgun sequence	4021..4151	enterobacteriales	IncFII	100	261 / 261	ABNUZR010000026.1 Salmonella enterica strain PNUSAS358723 SAMN35995226-rid18562563.denovo.26, whole genome shotgun sequence	38022..38282																																																avrA	ABNUZR010000002.1	508240..509109	99.885	870	0						
GCA_032687085.1_PDT001791158.1_genomic.fna	Salmonella_enterica	0.5217	473.955 KB	3	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUZO010000001.1 Salmonella enterica strain PNUSAS358728 SAMN35995258-rid18563033.denovo.01, whole genome shotgun sequence	657516..657953	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUZO010000024.1 Salmonella enterica strain PNUSAS358728 SAMN35995258-rid18563033.guided.13, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUZO010000002.1	510098..510964	99.08	870	0						
GCA_032687105.1_PDT001791156.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUZS010000001.1 Salmonella enterica strain PNUSAS358740 SAMN35995246-rid18563013.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUZS010000027.1 Salmonella enterica strain PNUSAS358740 SAMN35995246-rid18563013.guided.18, whole genome shotgun sequence	2172..2609	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUZS010000018.1 Salmonella enterica strain PNUSAS358740 SAMN35995246-rid18563013.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNUZS010000019.1 Salmonella enterica strain PNUSAS358740 SAMN35995246-rid18563013.denovo.20, whole genome shotgun sequence	3376..3637																																																avrA	ABNUZS010000002.1	553636..554505	99.54	870	0						
GCA_032687165.1_PDT001791153.1_genomic.fna	Salmonella_enterica	0.5213	476.917 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUZV010000001.1 Salmonella enterica strain PNUSAS358602 SAMN35995240-rid18562553.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUZV010000028.1 Salmonella enterica strain PNUSAS358602 SAMN35995240-rid18562553.guided.19, whole genome shotgun sequence	13795..14232	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNUZV010000022.1 Salmonella enterica strain PNUSAS358602 SAMN35995240-rid18562553.denovo.25, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUZV010000014.1 Salmonella enterica strain PNUSAS358602 SAMN35995240-rid18562553.denovo.14, whole genome shotgun sequence	50251..50893		enterobacteriales	IncFII(S)	100	262 / 262	ABNUZV010000014.1 Salmonella enterica strain PNUSAS358602 SAMN35995240-rid18562553.denovo.14, whole genome shotgun sequence	5998..6259																																									avrA	ABNUZV010000002.1	553078..553947	99.54	870	0						
GCA_032687205.1_PDT001791151.1_genomic.fna	Salmonella_enterica	0.5212	469.745 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNUZW010000001.1 Salmonella enterica strain PNUSAS358586 SAMN35995611-rid18562543.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNUZW010000031.1 Salmonella enterica strain PNUSAS358586 SAMN35995611-rid18562543.guided.22, whole genome shotgun sequence	11270..11707	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNUZW010000017.1 Salmonella enterica strain PNUSAS358586 SAMN35995611-rid18562543.denovo.17, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABNUZW010000017.1 Salmonella enterica strain PNUSAS358586 SAMN35995611-rid18562543.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABNUZW010000007.1	174798..175667	99.54	870	0						
GCA_032687225.1_PDT001791149.1_genomic.fna	Salmonella_enterica	0.5207	338.281 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNUZZ010000002.1 Salmonella enterica strain PNUSAS358603 SAMN35995616-rid18562963.denovo.02, whole genome shotgun sequence	149638..150075	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNUZZ010000023.1 Salmonella enterica strain PNUSAS358603 SAMN35995616-rid18562963.guided.18, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032687245.1_PDT001791148.1_genomic.fna	Salmonella_enterica	0.5205	558.984 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVAA010000001.1 Salmonella enterica strain PNUSAS358585 SAMN35995622-rid18562953.denovo.01, whole genome shotgun sequence	666900..667337	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNVAA010000024.1 Salmonella enterica strain PNUSAS358585 SAMN35995622-rid18562953.guided.16, whole genome shotgun sequence	5300..5737	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNVAA010000011.1 Salmonella enterica strain PNUSAS358585 SAMN35995622-rid18562953.denovo.11, whole genome shotgun sequence	3010..3543																																																						avrA	ABNVAA010000005.1	140050..140920	99.656	871	0						
GCA_032687265.1_PDT001791150.1_genomic.fna	Salmonella_enterica	0.5217	309.64 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_19,thrA_1	679	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNUZX010000007.1 Salmonella enterica strain PNUSAS358721 SAMN35995228-rid18562973.denovo.07, whole genome shotgun sequence	136419..136856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNUZX010000040.1 Salmonella enterica strain PNUSAS358721 SAMN35995228-rid18562973.guided.30, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNUZX010000008.1	102072..102937	98.966	870	0						
GCA_032687285.1_PDT001791147.1_genomic.fna	Salmonella_enterica	0.5202	252.58 KB	6	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVAB010000002.1 Salmonella enterica strain PNUSAS358589 SAMN35995625-rid18562943.denovo.02, whole genome shotgun sequence	513033..513470	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVAB010000034.1 Salmonella enterica strain PNUSAS358589 SAMN35995625-rid18562943.guided.24, whole genome shotgun sequence	8485..8922	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVAB010000001.1	506359..507228	99.31	870	0						
GCA_032687305.1_PDT001791146.1_genomic.fna	Salmonella_enterica	0.5216	280.443 KB	6	aroC_10,dnaN_7,hemD_313,hisD_9,purE_5,sucA_9,thrA_2	Unknown	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_313	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVAC010000001.1 Salmonella enterica strain PNUSAS358607 SAMN35995619-rid18562933.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVAC010000045.1 Salmonella enterica strain PNUSAS358607 SAMN35995619-rid18562933.guided.31, whole genome shotgun sequence	10784..11221	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVAC010000017.1 Salmonella enterica strain PNUSAS358607 SAMN35995619-rid18562933.denovo.17, whole genome shotgun sequence	44623..45265	enterobacteriales	IncFII(S)	100	262 / 262	ABNVAC010000017.1 Salmonella enterica strain PNUSAS358607 SAMN35995619-rid18562933.denovo.17, whole genome shotgun sequence	60350..60611		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNVAC010000020.1 Salmonella enterica strain PNUSAS358607 SAMN35995619-rid18562933.denovo.20, whole genome shotgun sequence	67750..67891																																									avrA	ABNVAC010000002.1	204227..205096	99.885	870	0						
GCA_032687345.1_PDT001791144.1_genomic.fna	Salmonella_enterica	0.521	386.247 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVAE010000011.1 Salmonella enterica strain PNUSAS358734 SAMN35995252-rid18562913.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVAE010000041.1 Salmonella enterica strain PNUSAS358734 SAMN35995252-rid18562913.guided.29, whole genome shotgun sequence	4406..4843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNVAE010000020.1 Salmonella enterica strain PNUSAS358734 SAMN35995252-rid18562913.denovo.20, whole genome shotgun sequence	34958..35491																																																						avrA	ABNVAE010000001.1	187683..188549	98.966	870	0						
GCA_032687365.1_PDT001791143.1_genomic.fna	Salmonella_enterica	0.5205	293.812 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVAF010000011.1 Salmonella enterica strain PNUSAS358597 SAMN35995617-rid18562903.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVAF010000055.1 Salmonella enterica strain PNUSAS358597 SAMN35995617-rid18562903.guided.30, whole genome shotgun sequence	15604..16041	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNVAF010000020.1 Salmonella enterica strain PNUSAS358597 SAMN35995617-rid18562903.denovo.20, whole genome shotgun sequence	34958..35491																																																						avrA	ABNVAF010000003.1	39478..40344	98.966	870	0						
GCA_032687385.1_PDT001791142.1_genomic.fna	Salmonella_enterica	0.521	149.839 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVAH010000004.1 Salmonella enterica strain PNUSAS358601 SAMN35995614-rid18562893.denovo.04, whole genome shotgun sequence	231973..232410	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNVAH010000057.1 Salmonella enterica strain PNUSAS358601 SAMN35995614-rid18562893.denovo.61, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNVAH010000057.1 Salmonella enterica strain PNUSAS358601 SAMN35995614-rid18562893.denovo.61, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNVAH010000079.1 Salmonella enterica strain PNUSAS358601 SAMN35995614-rid18562893.guided.55, whole genome shotgun sequence	2149..2586	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNVAH010000081.1 Salmonella enterica strain PNUSAS358601 SAMN35995614-rid18562893.guided.62, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNVAH010000081.1 Salmonella enterica strain PNUSAS358601 SAMN35995614-rid18562893.guided.62, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	874/876	ABNVAH010000067.1 Salmonella enterica strain PNUSAS358601 SAMN35995614-rid18562893.denovo.73, whole genome shotgun sequence	835..1708	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNVAH010000082.1 Salmonella enterica strain PNUSAS358601 SAMN35995614-rid18562893.guided.72, whole genome shotgun sequence	845..1720	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNVAH010000053.1 Salmonella enterica strain PNUSAS358601 SAMN35995614-rid18562893.denovo.56, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNVAH010000080.1 Salmonella enterica strain PNUSAS358601 SAMN35995614-rid18562893.guided.58, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVAH010000042.1 Salmonella enterica strain PNUSAS358601 SAMN35995614-rid18562893.denovo.43, whole genome shotgun sequence	9109..9668																																																						avrA	ABNVAH010000001.1	39349..40218	99.655	870	0						
GCA_032687405.1_PDT001791141.1_genomic.fna	Salmonella_enterica	0.52	469.848 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVAG010000001.1 Salmonella enterica strain PNUSAS358590 SAMN35995606-rid18562883.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVAG010000028.1 Salmonella enterica strain PNUSAS358590 SAMN35995606-rid18562883.guided.20, whole genome shotgun sequence	11972..12409	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVAG010000015.1 Salmonella enterica strain PNUSAS358590 SAMN35995606-rid18562883.denovo.16, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABNVAG010000015.1 Salmonella enterica strain PNUSAS358590 SAMN35995606-rid18562883.denovo.16, whole genome shotgun sequence	5032..5293		enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABNVAG010000016.1 Salmonella enterica strain PNUSAS358590 SAMN35995606-rid18562883.denovo.17, whole genome shotgun sequence	4511..4832																																									avrA	ABNVAG010000007.1	174740..175609	99.54	870	0						
GCA_032687425.1_PDT001791140.1_genomic.fna	Salmonella_enterica	0.5212	456.157 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVAI010000005.1 Salmonella enterica strain PNUSAS358598 SAMN35995627-rid18564023.denovo.05, whole genome shotgun sequence	162454..162891	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.34	383/438	ABNVAI010000027.1 Salmonella enterica strain PNUSAS358598 SAMN35995627-rid18564023.guided.22, whole genome shotgun sequence	1..383	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVAI010000016.1 Salmonella enterica strain PNUSAS358598 SAMN35995627-rid18564023.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNVAI010000016.1 Salmonella enterica strain PNUSAS358598 SAMN35995627-rid18564023.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNVAI010000001.1	553275..554144	99.54	870	0						
GCA_032687445.1_PDT001791139.1_genomic.fna	Salmonella_enterica	0.5208	326.993 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVAJ010000011.1 Salmonella enterica strain PNUSAS358600 SAMN35995624-rid18562873.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVAJ010000049.1 Salmonella enterica strain PNUSAS358600 SAMN35995624-rid18562873.guided.29, whole genome shotgun sequence	4064..4501	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNVAJ010000020.1 Salmonella enterica strain PNUSAS358600 SAMN35995624-rid18562873.denovo.20, whole genome shotgun sequence	34957..35490																																																						avrA	ABNVAJ010000003.1	39478..40344	98.966	870	0						
GCA_032687485.1_PDT001791138.1_genomic.fna	Salmonella_enterica	0.5215	339.23 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVAK010000001.1 Salmonella enterica strain PNUSAS358608 SAMN35995610-rid18564013.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVAK010000031.1 Salmonella enterica strain PNUSAS358608 SAMN35995610-rid18564013.guided.22, whole genome shotgun sequence	7103..7540	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVAK010000018.1 Salmonella enterica strain PNUSAS358608 SAMN35995610-rid18564013.denovo.18, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNVAK010000018.1 Salmonella enterica strain PNUSAS358608 SAMN35995610-rid18564013.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABNVAK010000005.1	28858..29727	99.54	870	0						
GCA_032687545.1_PDT001791133.1_genomic.fna	Salmonella_enterica	0.5212	481.109 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVAP010000001.1 Salmonella enterica strain PNUSAS358594 SAMN35995620-rid18562823.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVAP010000028.1 Salmonella enterica strain PNUSAS358594 SAMN35995620-rid18562823.guided.17, whole genome shotgun sequence	27848..28285	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVAP010000017.1 Salmonella enterica strain PNUSAS358594 SAMN35995620-rid18562823.denovo.18, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABNVAP010000017.1 Salmonella enterica strain PNUSAS358594 SAMN35995620-rid18562823.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABNVAP010000002.1	553058..553927	99.54	870	0						
GCA_032687585.1_PDT001791132.1_genomic.fna	Salmonella_enterica	0.5218	219.518 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVAO010000001.1 Salmonella enterica strain PNUSAS358727 SAMN35995259-rid18562813.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVAO010000032.1 Salmonella enterica strain PNUSAS358727 SAMN35995259-rid18562813.guided.25, whole genome shotgun sequence	32258..32695	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVAO010000002.1	208425..209293	99.77	870	0						
GCA_032687605.1_PDT001791130.1_genomic.fna	Salmonella_enterica	0.5217	508.016 KB	2	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVAR010000001.1 Salmonella enterica strain PNUSAS358724 SAMN35995262-rid18564003.denovo.01, whole genome shotgun sequence	1363585..1364022	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVAR010000018.1 Salmonella enterica strain PNUSAS358724 SAMN35995262-rid18564003.guided.12, whole genome shotgun sequence	40128..40565	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVAR010000007.1	150695..151565	99.196	871	0						
GCA_032687625.1_PDT001791123.1_genomic.fna	Salmonella_enterica	0.5213	282.835 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	Col8282	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVAV010000001.1 Salmonella enterica strain PNUSAS358738 SAMN35995248-rid18562743.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVAV010000033.1 Salmonella enterica strain PNUSAS358738 SAMN35995248-rid18562743.denovo.38, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVAV010000033.1 Salmonella enterica strain PNUSAS358738 SAMN35995248-rid18562743.denovo.38, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNVAV010000046.1 Salmonella enterica strain PNUSAS358738 SAMN35995248-rid18562743.guided.27, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVAV010000049.1 Salmonella enterica strain PNUSAS358738 SAMN35995248-rid18562743.guided.37, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVAV010000049.1 Salmonella enterica strain PNUSAS358738 SAMN35995248-rid18562743.guided.37, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNVAV010000036.1 Salmonella enterica strain PNUSAS358738 SAMN35995248-rid18562743.denovo.42, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNVAV010000050.1 Salmonella enterica strain PNUSAS358738 SAMN35995248-rid18562743.guided.41, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNVAV010000033.1 Salmonella enterica strain PNUSAS358738 SAMN35995248-rid18562743.denovo.38, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNVAV010000049.1 Salmonella enterica strain PNUSAS358738 SAMN35995248-rid18562743.guided.37, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNVAV010000027.1 Salmonella enterica strain PNUSAS358738 SAMN35995248-rid18562743.denovo.30, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNVAV010000048.1 Salmonella enterica strain PNUSAS358738 SAMN35995248-rid18562743.guided.31, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col8282	90.1	202 / 207	ABNVAV010000034.1 Salmonella enterica strain PNUSAS358738 SAMN35995248-rid18562743.denovo.39, whole genome shotgun sequence	191..392																																																						avrA	ABNVAV010000002.1	589950..590819	99.885	870	0						
GCA_032687645.1_PDT001791129.1_genomic.fna	Salmonella_enterica	0.5224	225.41 KB	8	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNVAS010000001.1 Salmonella enterica strain PNUSAS358722 SAMN35995227-rid18562793.denovo.01, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNVAS010000037.1 Salmonella enterica strain PNUSAS358722 SAMN35995227-rid18562793.guided.30, whole genome shotgun sequence	2189..2626	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVAS010000005.1	43272..44141	99.77	870	0						
GCA_032687665.1_PDT001791125.1_genomic.fna	Salmonella_enterica	0.5213	407.022 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVAU010000001.1 Salmonella enterica strain PNUSAS358733 SAMN35995253-rid18562763.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVAU010000021.1 Salmonella enterica strain PNUSAS358733 SAMN35995253-rid18562763.guided.16, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVAU010000017.1 Salmonella enterica strain PNUSAS358733 SAMN35995253-rid18562763.denovo.19, whole genome shotgun sequence	6838..7480	enterobacteriales	IncFII(S)	100	262 / 262	ABNVAU010000014.1 Salmonella enterica strain PNUSAS358733 SAMN35995253-rid18562763.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNVAU010000002.1	553636..554505	99.54	870	0						
GCA_032687685.1_PDT001791127.1_genomic.fna	Salmonella_enterica	0.5214	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVAT010000001.1 Salmonella enterica strain PNUSAS358726 SAMN35995260-rid18562783.denovo.01, whole genome shotgun sequence	774542..774979	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVAT010000025.1 Salmonella enterica strain PNUSAS358726 SAMN35995260-rid18562783.guided.19, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVAT010000018.1 Salmonella enterica strain PNUSAS358726 SAMN35995260-rid18562783.denovo.18, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABNVAT010000020.1 Salmonella enterica strain PNUSAS358726 SAMN35995260-rid18562783.denovo.21, whole genome shotgun sequence	3384..3645																																																avrA	ABNVAT010000002.1	553553..554422	99.54	870	0						
GCA_032687705.1_PDT001791122.1_genomic.fna	Salmonella_enterica	0.5206	469.75 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVAW010000001.1 Salmonella enterica strain PNUSAS358582 SAMN35995241-rid18562733.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVAW010000028.1 Salmonella enterica strain PNUSAS358582 SAMN35995241-rid18562733.guided.18, whole genome shotgun sequence	26515..26952	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVAW010000016.1 Salmonella enterica strain PNUSAS358582 SAMN35995241-rid18562733.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNVAW010000016.1 Salmonella enterica strain PNUSAS358582 SAMN35995241-rid18562733.denovo.16, whole genome shotgun sequence	5032..5293		enterobacteriales	IncX1	98.93	374 / 374	ABNVAW010000017.1 Salmonella enterica strain PNUSAS358582 SAMN35995241-rid18562733.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABNVAW010000007.1	174341..175210	99.54	870	0						
GCA_032687725.1_PDT001791121.1_genomic.fna	Salmonella_enterica	0.521	489.739 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVAX010000001.1 Salmonella enterica strain PNUSAS358592 SAMN35995244-rid18562723.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVAX010000027.1 Salmonella enterica strain PNUSAS358592 SAMN35995244-rid18562723.guided.17, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVAX010000016.1 Salmonella enterica strain PNUSAS358592 SAMN35995244-rid18562723.denovo.16, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABNVAX010000016.1 Salmonella enterica strain PNUSAS358592 SAMN35995244-rid18562723.denovo.16, whole genome shotgun sequence	4078..4339																																																avrA	ABNVAX010000002.1	505304..506173	99.54	870	0						
GCA_032687745.1_PDT001791120.1_genomic.fna	Salmonella_enterica	0.5221	494.667 KB	4	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVAY010000008.1 Salmonella enterica strain PNUSAS358609 SAMN35995245-rid18563983.denovo.08, whole genome shotgun sequence	145343..145780	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNVAY010000018.1 Salmonella enterica strain PNUSAS358609 SAMN35995245-rid18563983.guided.16, whole genome shotgun sequence	20690..21127	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVAY010000002.1	505345..506214	99.77	870	0						
GCA_032687765.1_PDT001791118.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVAZ010000001.1 Salmonella enterica strain PNUSAS358736 SAMN35995250-rid18563973.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVAZ010000025.1 Salmonella enterica strain PNUSAS358736 SAMN35995250-rid18563973.guided.20, whole genome shotgun sequence	3973..4410	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVAZ010000016.1 Salmonella enterica strain PNUSAS358736 SAMN35995250-rid18563973.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNVAZ010000018.1 Salmonella enterica strain PNUSAS358736 SAMN35995250-rid18563973.denovo.21, whole genome shotgun sequence	3402..3663																																																avrA	ABNVAZ010000002.1	553630..554499	99.54	870	0						
GCA_032687785.1_PDT001791116.1_genomic.fna	Salmonella_enterica	0.5222	106.568 KB	13	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVBB010000033.1 Salmonella enterica strain PNUSAS358732 SAMN35995254-rid18562693.denovo.33, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVBB010000069.1 Salmonella enterica strain PNUSAS358732 SAMN35995254-rid18562693.guided.56, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABNVBB010000031.1 Salmonella enterica strain PNUSAS358732 SAMN35995254-rid18562693.denovo.31, whole genome shotgun sequence	26921..27180																																																																	
GCA_032687805.1_PDT001791117.1_genomic.fna	Salmonella_enterica	0.5212	222.821 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVBA010000001.1 Salmonella enterica strain PNUSAS358588 SAMN35995608-rid18562703.denovo.01, whole genome shotgun sequence	77668..78105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVBA010000049.1 Salmonella enterica strain PNUSAS358588 SAMN35995608-rid18562703.guided.32, whole genome shotgun sequence	9822..10259	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVBA010000019.1 Salmonella enterica strain PNUSAS358588 SAMN35995608-rid18562703.denovo.19, whole genome shotgun sequence	44623..45265	enterobacteriales	IncFII(S)	100	262 / 262	ABNVBA010000019.1 Salmonella enterica strain PNUSAS358588 SAMN35995608-rid18562703.denovo.19, whole genome shotgun sequence	60350..60611																																																avrA	ABNVBA010000003.1	209070..209940	99.77	871	0						
GCA_032687825.1_PDT001791115.1_genomic.fna	Salmonella_enterica	0.5211	477.534 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVBC010000001.1 Salmonella enterica strain PNUSAS358729 SAMN35995257-rid18562683.denovo.01, whole genome shotgun sequence	815087..815524	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVBC010000025.1 Salmonella enterica strain PNUSAS358729 SAMN35995257-rid18562683.guided.13, whole genome shotgun sequence	4024..4461	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVBC010000016.1 Salmonella enterica strain PNUSAS358729 SAMN35995257-rid18562683.denovo.17, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNVBC010000017.1 Salmonella enterica strain PNUSAS358729 SAMN35995257-rid18562683.denovo.19, whole genome shotgun sequence	3372..3633																																																avrA	ABNVBC010000002.1	553187..554056	99.54	870	0						
GCA_032687845.1_PDT001791114.1_genomic.fna	Salmonella_enterica	0.5204	477.929 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVBD010000001.1 Salmonella enterica strain PNUSAS358735 SAMN35995251-rid18562673.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVBD010000024.1 Salmonella enterica strain PNUSAS358735 SAMN35995251-rid18562673.guided.13, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVBD010000017.1 Salmonella enterica strain PNUSAS358735 SAMN35995251-rid18562673.denovo.19, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNVBD010000019.1 Salmonella enterica strain PNUSAS358735 SAMN35995251-rid18562673.denovo.22, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.93	374 / 374	ABNVBD010000013.1 Salmonella enterica strain PNUSAS358735 SAMN35995251-rid18562673.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNVBD010000002.1	553690..554559	99.54	870	0						
GCA_032687865.1_PDT001791113.1_genomic.fna	Salmonella_enterica	0.5227	285.413 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNVBE010000003.1 Salmonella enterica strain PNUSAS358584 SAMN35995612-rid18562663.denovo.03, whole genome shotgun sequence	293217..293654	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNVBE010000040.1 Salmonella enterica strain PNUSAS358584 SAMN35995612-rid18562663.guided.23, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNVBE010000029.1 Salmonella enterica strain PNUSAS358584 SAMN35995612-rid18562663.denovo.32, whole genome shotgun sequence	805..997																																																						avrA	ABNVBE010000001.1	406261..407129	99.425	870	0						
GCA_032687905.1_PDT001791111.1_genomic.fna	Salmonella_enterica	0.5217	219.542 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVBF010000001.1 Salmonella enterica strain PNUSAS358739 SAMN35995247-rid18562643.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVBF010000035.1 Salmonella enterica strain PNUSAS358739 SAMN35995247-rid18562643.guided.25, whole genome shotgun sequence	30260..30697	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVBF010000005.1	94133..95001	99.77	870	0						
GCA_032687925.1_PDT001791108.1_genomic.fna	Salmonella_enterica	0.5214	478.496 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVBI010000001.1 Salmonella enterica strain PNUSAS358581 SAMN35995243-rid18563963.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVBI010000029.1 Salmonella enterica strain PNUSAS358581 SAMN35995243-rid18563963.guided.18, whole genome shotgun sequence	4346..4783	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVBI010000014.1 Salmonella enterica strain PNUSAS358581 SAMN35995243-rid18563963.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNVBI010000014.1 Salmonella enterica strain PNUSAS358581 SAMN35995243-rid18563963.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNVBI010000002.1	553077..553946	99.54	870	0						
GCA_032687985.1_PDT001791105.1_genomic.fna	Salmonella_enterica	0.5212	421.398 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVBK010000001.1 Salmonella enterica strain PNUSAS358591 SAMN35995242-rid18562593.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVBK010000024.1 Salmonella enterica strain PNUSAS358591 SAMN35995242-rid18562593.guided.16, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVBK010000015.1 Salmonella enterica strain PNUSAS358591 SAMN35995242-rid18562593.denovo.15, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABNVBK010000015.1 Salmonella enterica strain PNUSAS358591 SAMN35995242-rid18562593.denovo.15, whole genome shotgun sequence	4078..4339																																																avrA	ABNVBK010000002.1	552782..553651	99.54	870	0						
GCA_032688005.1_PDT001791104.1_genomic.fna	Salmonella_enterica	0.5213	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVBM010000001.1 Salmonella enterica strain PNUSAS358730 SAMN35995256-rid18562583.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVBM010000024.1 Salmonella enterica strain PNUSAS358730 SAMN35995256-rid18562583.guided.14, whole genome shotgun sequence	10889..11326	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVBM010000017.1 Salmonella enterica strain PNUSAS358730 SAMN35995256-rid18562583.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNVBM010000018.1 Salmonella enterica strain PNUSAS358730 SAMN35995256-rid18562583.denovo.21, whole genome shotgun sequence	3404..3665																																																avrA	ABNVBM010000002.1	553636..554505	99.54	870	0						
GCA_032688065.1_PDT001791099.1_genomic.fna	Salmonella_enterica	0.5213	406.452 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVBN010000001.1 Salmonella enterica strain PNUSAS358856 SAMN35991265-rid18562483.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVBN010000029.1 Salmonella enterica strain PNUSAS358856 SAMN35991265-rid18562483.guided.24, whole genome shotgun sequence	3495..3932	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVBN010000019.1 Salmonella enterica strain PNUSAS358856 SAMN35991265-rid18562483.denovo.19, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABNVBN010000021.1 Salmonella enterica strain PNUSAS358856 SAMN35991265-rid18562483.denovo.22, whole genome shotgun sequence	3402..3663																																																avrA	ABNVBN010000002.1	585348..586217	99.54	870	0						
GCA_032688085.1_PDT001791098.1_genomic.fna	Salmonella_enterica	0.5189	47.144 KB	32	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	-:i:-	10	aac(6')-Iaa,aadA7,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aadA7,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul1,sul2,sul1,sul2,tet(B),tet(B),tet(B),bleO,bleO	0		3	Col(pHAD28),IncHI2,IncHI2A	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	-	Salmonella enterica subspecies enterica (subspecies I)	I -:i:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVBP010000019.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.denovo.019, whole genome shotgun sequence	52519..52956	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	ABNVBP010000106.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.denovo.109, whole genome shotgun sequence	2445..3242	Spectinomycin, Streptomycin	AF224733	aph(6)-Id	100	837/837	ABNVBP010000145.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.denovo.150, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVBP010000145.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.denovo.150, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(3')-Ia	99.75	816/816	ABNVBP010000173.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.denovo.182, whole genome shotgun sequence	524..1339	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU855787	aac(6')-Iaa	100	438/438	ABNVBP010000212.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.guided.074, whole genome shotgun sequence	15468..15905	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	ABNVBP010000213.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.guided.108, whole genome shotgun sequence	11185..11982	Spectinomycin, Streptomycin	AF224733	aph(6)-Id	100	837/837	ABNVBP010000215.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.guided.148, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVBP010000215.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.guided.148, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	aph(3')-Ia	99.75	816/816	ABNVBP010000219.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.guided.181, whole genome shotgun sequence	105..920	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU855787	blaTEM-1B	100	861/861	ABNVBP010000123.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.denovo.127, whole genome shotgun sequence	7511..8371	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNVBP010000220.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.guided.193, whole genome shotgun sequence	22..882	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	ABNVBP010000106.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.denovo.109, whole genome shotgun sequence	1101..1940	Sulfamethoxazole	U12338	sul2	100	816/816	ABNVBP010000145.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.denovo.150, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABNVBP010000213.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.guided.108, whole genome shotgun sequence	12487..13326	Sulfamethoxazole	U12338	sul2	100	816/816	ABNVBP010000215.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.guided.148, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNVBP010000130.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.denovo.134, whole genome shotgun sequence	1168..2373	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNVBP010000216.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.guided.157, whole genome shotgun sequence	1053..2258	Doxycycline, Tetracycline, Minocycline	AP000342	tet(B)	100	1206/1206	ABNVBP010000217.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.guided.158, whole genome shotgun sequence	1053..2258	Doxycycline, Tetracycline, Minocycline	AF326777	bleO	100	392/399	ABNVBP010000170.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.denovo.178, whole genome shotgun sequence	178..569	Bleomycin	AF051917	bleO	100	392/399	ABNVBP010000218.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.guided.174, whole genome shotgun sequence	176..567	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																																																									enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNVBP010000147.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.denovo.152, whole genome shotgun sequence	186..316	enterobacteriales	IncHI2	100	327 / 327	ABNVBP010000056.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.denovo.057, whole genome shotgun sequence	19489..19815		enterobacteriales	IncHI2A	100	630 / 630	ABNVBP010000107.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313352 SAMN35988651-rid18562473.denovo.110, whole genome shotgun sequence	2749..3378																																									avrA	ABNVBP010000009.1	93863..94732	99.885	870	0						
GCA_032688105.1_PDT001791101.1_genomic.fna	Salmonella_enterica	0.5236	44.48 KB	34	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVBL010000012.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.denovo.012, whole genome shotgun sequence	75487..75924	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVBL010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.denovo.112, whole genome shotgun sequence	11974..12765	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVBL010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.denovo.112, whole genome shotgun sequence	11974..12765	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNVBL010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.denovo.159, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNVBL010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.denovo.159, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNVBL010000191.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.denovo.200, whole genome shotgun sequence	92..907	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	X62115	aac(6')-Iaa	97.49	438/438	ABNVBL010000208.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.guided.084, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVBL010000211.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.guided.110, whole genome shotgun sequence	1209..2000	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVBL010000211.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.guided.110, whole genome shotgun sequence	1209..2000	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNVBL010000214.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.guided.158, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNVBL010000214.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.guided.158, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNVBL010000216.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.guided.198, whole genome shotgun sequence	126..941	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	X62115	floR	98.19	1214/1215	ABNVBL010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.denovo.150, whole genome shotgun sequence	3189..4402	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNVBL010000213.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.guided.155, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNVBL010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.denovo.112, whole genome shotgun sequence	10630..11469	Sulfamethoxazole	U12338	sul1	100	840/840	ABNVBL010000211.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.guided.110, whole genome shotgun sequence	2505..3344	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNVBL010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.denovo.124, whole genome shotgun sequence	1841..3040	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVBL010000212.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.guided.143, whole genome shotgun sequence	1872..3071	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNVBL010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.denovo.165, whole genome shotgun sequence	121..594	Trimethoprim	AF393510	dfrA14	100	474/474	ABNVBL010000215.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.guided.173, whole genome shotgun sequence	152..625	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVBL010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313335 SAMN35985443-rid18562503.denovo.151, whole genome shotgun sequence	2034..2593																																																						avrA	ABNVBL010000036.1	39687..40556	99.655	870	0						
GCA_032688145.1_PDT001791097.1_genomic.fna	Salmonella_enterica	0.5228	443.605 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVBQ010000001.1 Salmonella enterica strain PNUSAS358854 SAMN35991268-rid18562463.denovo.01, whole genome shotgun sequence	790294..790731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVBQ010000026.1 Salmonella enterica strain PNUSAS358854 SAMN35991268-rid18562463.guided.16, whole genome shotgun sequence	12975..13412	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVBQ010000005.1	183135..184004	98.966	870	0						
GCA_032688165.1_PDT001791093.1_genomic.fna	Salmonella_enterica	0.5217	195.043 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,floR,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVBW010000001.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVBW010000030.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.denovo.30, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVBW010000030.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.denovo.30, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNVBW010000046.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.denovo.52, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNVBW010000046.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.denovo.52, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNVBW010000054.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.denovo.64, whole genome shotgun sequence	93..908	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	X62115	aph(4)-Ia	100	1026/1026	ABNVBW010000068.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.guided.51, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNVBW010000068.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.guided.51, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNVBW010000069.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.guided.56, whole genome shotgun sequence	3227..3664	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVBW010000071.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.guided.58, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVBW010000071.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.guided.58, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNVBW010000072.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.guided.63, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	X62115	floR	98.19	1214/1215	ABNVBW010000042.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.denovo.47, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNVBW010000066.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.guided.45, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNVBW010000067.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.guided.46, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNVBW010000030.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.denovo.30, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNVBW010000071.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.guided.58, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNVBW010000030.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.denovo.30, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVBW010000065.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.guided.42, whole genome shotgun sequence	497..1696	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNVBW010000040.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.denovo.43, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNVBW010000070.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.guided.57, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																					gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVBW010000034.1 Salmonella enterica strain PNUSAS358857 SAMN35991262-rid18562423.denovo.34, whole genome shotgun sequence	9109..9668																																																						avrA	ABNVBW010000003.1	94085..94954	99.655	870	0						
GCA_032688185.1_PDT001791094.1_genomic.fna	Salmonella_enterica	0.5221	67.969 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVBS010000020.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313331 SAMN35985395-rid18562433.denovo.020, whole genome shotgun sequence	62381..62818	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVBS010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313331 SAMN35985395-rid18562433.denovo.053, whole genome shotgun sequence	1311..2102	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVBS010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313331 SAMN35985395-rid18562433.denovo.053, whole genome shotgun sequence	1311..2102	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNVBS010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313331 SAMN35985395-rid18562433.denovo.135, whole genome shotgun sequence	93..908	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	aac(6')-Iaa	97.49	438/438	ABNVBS010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313331 SAMN35985395-rid18562433.guided.072, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVBS010000142.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313331 SAMN35985395-rid18562433.guided.087, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVBS010000142.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313331 SAMN35985395-rid18562433.guided.087, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNVBS010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313331 SAMN35985395-rid18562433.guided.131, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	sul1	100	840/840	ABNVBS010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313331 SAMN35985395-rid18562433.denovo.053, whole genome shotgun sequence	2607..3446	Sulfamethoxazole	U12338	sul1	100	840/840	ABNVBS010000142.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313331 SAMN35985395-rid18562433.guided.087, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNVBS010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313331 SAMN35985395-rid18562433.denovo.053, whole genome shotgun sequence	15963..17162	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVBS010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313331 SAMN35985395-rid18562433.guided.105, whole genome shotgun sequence	1835..3034	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVBS010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313331 SAMN35985395-rid18562433.denovo.081, whole genome shotgun sequence	13998..14557																																																						avrA	ABNVBS010000003.1	149828..150697	99.655	870	0						
GCA_032688205.1_PDT001791092.1_genomic.fna	Salmonella_enterica	0.5197	489.647 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVBV010000001.1 Salmonella enterica strain PNUSAS358462 SAMN35989714-rid18562413.denovo.01, whole genome shotgun sequence	733719..734156	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVBV010000025.1 Salmonella enterica strain PNUSAS358462 SAMN35989714-rid18562413.guided.18, whole genome shotgun sequence	5074..5511	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVBV010000011.1 Salmonella enterica strain PNUSAS358462 SAMN35989714-rid18562413.denovo.12, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABNVBV010000011.1 Salmonella enterica strain PNUSAS358462 SAMN35989714-rid18562413.denovo.12, whole genome shotgun sequence	55625..55886		enterobacteriales	IncX1	98.67	377 / 377	ABNVBV010000012.1 Salmonella enterica strain PNUSAS358462 SAMN35989714-rid18562413.denovo.13, whole genome shotgun sequence	6390..6766																																									avrA	ABNVBV010000002.1	553108..553977	99.54	870	0						
GCA_032688225.1_PDT001791089.1_genomic.fna	Salmonella_enterica	0.5223	535.041 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVBU010000001.1 Salmonella enterica strain PNUSAS358503 SAMN35989205-rid18562383.denovo.01, whole genome shotgun sequence	387185..387622	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNVBU010000028.1 Salmonella enterica strain PNUSAS358503 SAMN35989205-rid18562383.guided.18, whole genome shotgun sequence	2206..2643	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVBU010000003.1	506399..507268	99.655	870	0						
GCA_032688265.1_PDT001791085.1_genomic.fna	Salmonella_enterica	0.5214	696.002 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVBY010000001.1 Salmonella enterica strain PNUSAS358513 SAMN35989209-rid18562343.denovo.01, whole genome shotgun sequence	643035..643472	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVBY010000019.1 Salmonella enterica strain PNUSAS358513 SAMN35989209-rid18562343.guided.14, whole genome shotgun sequence	11021..11458	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032688305.1_PDT001791082.1_genomic.fna	Salmonella_enterica	0.5225	90.04 KB	20	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVBZ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313350 SAMN35987647-rid18562313.denovo.001, whole genome shotgun sequence	176401..176838	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVBZ010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313350 SAMN35987647-rid18562313.denovo.058, whole genome shotgun sequence	22841..23632	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVBZ010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313350 SAMN35987647-rid18562313.denovo.058, whole genome shotgun sequence	22841..23632	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNVBZ010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313350 SAMN35987647-rid18562313.denovo.093, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNVBZ010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313350 SAMN35987647-rid18562313.denovo.093, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNVBZ010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313350 SAMN35987647-rid18562313.guided.041, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVBZ010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313350 SAMN35987647-rid18562313.guided.071, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVBZ010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313350 SAMN35987647-rid18562313.guided.071, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNVBZ010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313350 SAMN35987647-rid18562313.guided.092, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNVBZ010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313350 SAMN35987647-rid18562313.guided.092, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNVBZ010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313350 SAMN35987647-rid18562313.denovo.058, whole genome shotgun sequence	21497..22336	Sulfamethoxazole	U12338	sul1	100	840/840	ABNVBZ010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313350 SAMN35987647-rid18562313.guided.071, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNVBZ010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313350 SAMN35987647-rid18562313.denovo.058, whole genome shotgun sequence	7781..8980	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVBZ010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313350 SAMN35987647-rid18562313.guided.071, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVBZ010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313350 SAMN35987647-rid18562313.denovo.060, whole genome shotgun sequence	9109..9668																																																						avrA	ABNVBZ010000039.1	43267..44136	99.655	870	0						
GCA_032688325.1_PDT001791079.1_genomic.fna	Salmonella_enterica	0.5214	478.496 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVCA010000001.1 Salmonella enterica strain PNUSAS358505 SAMN35989202-rid18562283.denovo.01, whole genome shotgun sequence	602519..602956	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVCA010000029.1 Salmonella enterica strain PNUSAS358505 SAMN35989202-rid18562283.guided.19, whole genome shotgun sequence	7476..7913	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVCA010000014.1 Salmonella enterica strain PNUSAS358505 SAMN35989202-rid18562283.denovo.14, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNVCA010000018.1 Salmonella enterica strain PNUSAS358505 SAMN35989202-rid18562283.denovo.21, whole genome shotgun sequence	3446..3707																																																avrA	ABNVCA010000002.1	553636..554505	99.54	870	0						
GCA_032688345.1_PDT001791077.1_genomic.fna	Salmonella_enterica	0.5214	381.937 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVCB010000001.1 Salmonella enterica strain PNUSAS358846 SAMN35991274-rid18562263.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVCB010000028.1 Salmonella enterica strain PNUSAS358846 SAMN35991274-rid18562263.guided.23, whole genome shotgun sequence	130..567	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVCB010000020.1 Salmonella enterica strain PNUSAS358846 SAMN35991274-rid18562263.denovo.20, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNVCB010000022.1 Salmonella enterica strain PNUSAS358846 SAMN35991274-rid18562263.denovo.24, whole genome shotgun sequence	3398..3659																																																avrA	ABNVCB010000007.1	175197..176066	99.54	870	0						
GCA_032688365.1_PDT001791078.1_genomic.fna	Salmonella_enterica	0.5218	289.862 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVCC010000001.1 Salmonella enterica strain PNUSAS358452 SAMN35989172-rid18562273.denovo.01, whole genome shotgun sequence	772111..772548	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVCC010000039.1 Salmonella enterica strain PNUSAS358452 SAMN35989172-rid18562273.guided.23, whole genome shotgun sequence	15917..16354	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVCC010000003.1	95175..96044	99.195	870	0						
GCA_032688385.1_PDT001791072.1_genomic.fna	Salmonella_enterica	0.5214	763.658 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVCI010000001.1 Salmonella enterica strain PNUSAS358449 SAMN35989175-rid18562213.denovo.01, whole genome shotgun sequence	631255..631692	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVCI010000034.1 Salmonella enterica strain PNUSAS358449 SAMN35989175-rid18562213.guided.18, whole genome shotgun sequence	24972..25409	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNVCI010000021.1 Salmonella enterica strain PNUSAS358449 SAMN35989175-rid18562213.denovo.23, whole genome shotgun sequence	11457..12099																																																						avrA	ABNVCI010000003.1	668913..669782	99.425	870	0						
GCA_032688445.1_PDT001791069.1_genomic.fna	Salmonella_enterica	0.5227	62.974 KB	25	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVCL010000009.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313339 SAMN35985446-rid18562183.denovo.009, whole genome shotgun sequence	52301..52738	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVCL010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313339 SAMN35985446-rid18562183.denovo.067, whole genome shotgun sequence	22845..23636	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVCL010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313339 SAMN35985446-rid18562183.denovo.067, whole genome shotgun sequence	22845..23636	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNVCL010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313339 SAMN35985446-rid18562183.guided.066, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVCL010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313339 SAMN35985446-rid18562183.guided.066, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNVCL010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313339 SAMN35985446-rid18562183.guided.072, whole genome shotgun sequence	20627..21064	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNVCL010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313339 SAMN35985446-rid18562183.denovo.067, whole genome shotgun sequence	21501..22340	Sulfamethoxazole	U12338	sul1	100	840/840	ABNVCL010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313339 SAMN35985446-rid18562183.guided.066, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNVCL010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313339 SAMN35985446-rid18562183.denovo.067, whole genome shotgun sequence	7785..8984	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVCL010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313339 SAMN35985446-rid18562183.guided.066, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVCL010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313339 SAMN35985446-rid18562183.denovo.105, whole genome shotgun sequence	5321..5880																																																						avrA	ABNVCL010000011.1	94090..94959	99.655	870	0						
GCA_032688485.1_PDT001791076.1_genomic.fna	Salmonella_enterica	0.5221	219.426 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVCE010000001.1 Salmonella enterica strain PNUSAS358850 SAMN35991271-rid18562253.denovo.01, whole genome shotgun sequence	380041..380478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVCE010000042.1 Salmonella enterica strain PNUSAS358850 SAMN35991271-rid18562253.guided.36, whole genome shotgun sequence	3634..4071	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVCE010000003.1	218367..219235	99.77	870	0						
GCA_032688525.1_PDT001791066.1_genomic.fna	Salmonella_enterica	0.5218	96.99 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	ColRNAI,IncFIB(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVCK010000025.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313349 SAMN35987650-rid18562153.denovo.25, whole genome shotgun sequence	17786..18223	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVCK010000098.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313349 SAMN35987650-rid18562153.guided.64, whole genome shotgun sequence	7315..7752	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	91.07	112 / 130	ABNVCK010000077.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313349 SAMN35987650-rid18562153.denovo.80, whole genome shotgun sequence	2005..2116	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVCK010000064.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313349 SAMN35987650-rid18562153.denovo.67, whole genome shotgun sequence	6831..7473																																																avrA	ABNVCK010000007.1	81622..82491	99.54	870	0						
GCA_032688545.1_PDT001791068.1_genomic.fna	Salmonella_enterica	0.5224	332.834 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVCJ010000001.1 Salmonella enterica strain PNUSAS358455 SAMN35989169-rid18562173.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVCJ010000035.1 Salmonella enterica strain PNUSAS358455 SAMN35989169-rid18562173.guided.20, whole genome shotgun sequence	22466..22903	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVCJ010000002.1	149923..150792	99.655	870	0						
GCA_032688745.1_PDT001791059.1_genomic.fna	Salmonella_enterica	0.5208	695.988 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVCR010000001.1 Salmonella enterica strain PNUSAS358504 SAMN35989226-rid18562083.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVCR010000022.1 Salmonella enterica strain PNUSAS358504 SAMN35989226-rid18562083.guided.13, whole genome shotgun sequence	10261..10698	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032688765.1_PDT001791061.1_genomic.fna	Salmonella_enterica	0.5212	406.874 KB	5	aroC_18,dnaN_7,hemD_128,hisD_9,purE_39,sucA_9,thrA_153	513	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_7	hemD	100	100	hemD_128	hisD	100	100	hisD_9	purE	100	100	purE_39	sucA	100	100	sucA_9	thrA	100	100	thrA_153	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNVCQ010000002.1 Salmonella enterica strain PNUSAS358514 SAMN35989212-rid18562103.denovo.02, whole genome shotgun sequence	384101..384538	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNVCQ010000031.1 Salmonella enterica strain PNUSAS358514 SAMN35989212-rid18562103.guided.22, whole genome shotgun sequence	16457..16894	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABNVCQ010000004.1 Salmonella enterica strain PNUSAS358514 SAMN35989212-rid18562103.denovo.04, whole genome shotgun sequence	164455..164877	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNVCQ010000029.1 Salmonella enterica strain PNUSAS358514 SAMN35989212-rid18562103.guided.19, whole genome shotgun sequence	27655..28077	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVCQ010000001.1	556419..557288	99.54	870	0						
GCA_032688805.1_PDT001791058.1_genomic.fna	Salmonella_enterica	0.5211	376.404 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVCS010000002.1 Salmonella enterica strain PNUSAS358465 SAMN35989751-rid18562073.denovo.02, whole genome shotgun sequence	207388..207825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVCS010000044.1 Salmonella enterica strain PNUSAS358465 SAMN35989751-rid18562073.guided.31, whole genome shotgun sequence	1847..2284	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVCS010000001.1	450793..451662	99.885	870	0						
GCA_032688845.1_PDT001791056.1_genomic.fna	Salmonella_enterica	0.5209	477.766 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVCV010000001.1 Salmonella enterica strain PNUSAS358470 SAMN35989754-rid18562053.denovo.01, whole genome shotgun sequence	828623..829060	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVCV010000023.1 Salmonella enterica strain PNUSAS358470 SAMN35989754-rid18562053.guided.18, whole genome shotgun sequence	5855..6292	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVCV010000013.1 Salmonella enterica strain PNUSAS358470 SAMN35989754-rid18562053.denovo.14, whole genome shotgun sequence	36763..37405	enterobacteriales	IncFII(S)	100	262 / 262	ABNVCV010000013.1 Salmonella enterica strain PNUSAS358470 SAMN35989754-rid18562053.denovo.14, whole genome shotgun sequence	42855..43116																																																avrA	ABNVCV010000002.1	553190..554059	99.54	870	0						
GCA_032688885.1_PDT001791055.1_genomic.fna	Salmonella_enterica	0.5204	88.867 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVCW010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313341 SAMN35985449-rid18562043.denovo.012, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVCW010000086.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313341 SAMN35985449-rid18562043.denovo.089, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNVCW010000086.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313341 SAMN35985449-rid18562043.denovo.089, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNVCW010000155.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313341 SAMN35985449-rid18562043.guided.052, whole genome shotgun sequence	14098..14535	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVCW010000157.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313341 SAMN35985449-rid18562043.guided.097, whole genome shotgun sequence	2296..3132	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNVCW010000157.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313341 SAMN35985449-rid18562043.guided.097, whole genome shotgun sequence	1493..2296	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNVCW010000106.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313341 SAMN35985449-rid18562043.denovo.111, whole genome shotgun sequence	1863..3068	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNVCW010000158.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313341 SAMN35985449-rid18562043.guided.108, whole genome shotgun sequence	1894..3099	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNVCW010000093.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313341 SAMN35985449-rid18562043.denovo.096, whole genome shotgun sequence	3112..3793	enterobacteriales	IncFII	96.95	262 / 261	ABNVCW010000086.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313341 SAMN35985449-rid18562043.denovo.089, whole genome shotgun sequence	1831..2092		enterobacteriales	IncFII	96.95	262 / 261	ABNVCW010000157.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313341 SAMN35985449-rid18562043.guided.097, whole genome shotgun sequence	3755..4016		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNVCW010000087.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313341 SAMN35985449-rid18562043.denovo.090, whole genome shotgun sequence	4535..4676		enterobacteriales	IncX1	100	373 / 373	ABNVCW010000107.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313341 SAMN35985449-rid18562043.denovo.112, whole genome shotgun sequence	2732..3104																											avrA	ABNVCW010000015.1	93926..94795	99.655	870	0						
GCA_032688905.1_PDT001791053.1_genomic.fna	Salmonella_enterica	0.5192	181.552 KB	8	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4*	964*	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	99.6007984031936	100	thrA_4*	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNVCX010000003.1 Salmonella enterica strain PNUSAS358510 SAMN35989229-rid18562023.denovo.03, whole genome shotgun sequence	13148..13585	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNVCX010000096.1 Salmonella enterica strain PNUSAS358510 SAMN35989229-rid18562023.guided.45, whole genome shotgun sequence	3440..3877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNVCX010000032.1 Salmonella enterica strain PNUSAS358510 SAMN35989229-rid18562023.denovo.32, whole genome shotgun sequence	17375..18017																																																						avrA	ABNVCX010000006.1	160468..161336	99.425	870	0						
GCA_032688925.1_PDT001791052.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVCY010000001.1 Salmonella enterica strain PNUSAS358473 SAMN35989722-rid18562013.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVCY010000020.1 Salmonella enterica strain PNUSAS358473 SAMN35989722-rid18562013.guided.11, whole genome shotgun sequence	35870..36307	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVCY010000011.1 Salmonella enterica strain PNUSAS358473 SAMN35989722-rid18562013.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNVCY010000015.1 Salmonella enterica strain PNUSAS358473 SAMN35989722-rid18562013.denovo.18, whole genome shotgun sequence	3428..3689																																																avrA	ABNVCY010000002.1	553642..554511	99.54	870	0						
GCA_032688945.1_PDT001791051.1_genomic.fna	Salmonella_enterica	0.5222	171.871 KB	11	aroC_346,dnaN_4,hemD_8,hisD_125,purE_84,sucA_19,thrA_101	1296	9:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_346	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_19	thrA	100	100	thrA_101	9	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Lome		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNVCZ010000001.1 Salmonella enterica strain PNUSAS358861 SAMN35991259-rid18562003.denovo.01, whole genome shotgun sequence	150130..150567	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNVCZ010000053.1 Salmonella enterica strain PNUSAS358861 SAMN35991259-rid18562003.guided.42, whole genome shotgun sequence	4654..5091	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVCZ010000008.1	93973..94842	98.966	870	0						
GCA_032688965.1_PDT001791050.1_genomic.fna	Salmonella_enterica	0.5215	224.96 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVDA010000001.1 Salmonella enterica strain PNUSAS358842 SAMN35990988-rid18561993.denovo.01, whole genome shotgun sequence	151884..152321	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVDA010000049.1 Salmonella enterica strain PNUSAS358842 SAMN35990988-rid18561993.guided.40, whole genome shotgun sequence	1470..1907	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVDA010000034.1 Salmonella enterica strain PNUSAS358842 SAMN35990988-rid18561993.denovo.34, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNVDA010000026.1 Salmonella enterica strain PNUSAS358842 SAMN35990988-rid18561993.denovo.26, whole genome shotgun sequence	5032..5293																																																avrA	ABNVDA010000005.1	149499..150368	99.54	870	0						
GCA_032688985.1_PDT001791048.1_genomic.fna	Salmonella_enterica	0.5217	80.125 KB	20	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVDC010000025.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313334 SAMN35985398-rid18561973.denovo.025, whole genome shotgun sequence	17209..17646	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVDC010000133.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313334 SAMN35985398-rid18561973.guided.078, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVDC010000108.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313334 SAMN35985398-rid18561973.denovo.111, whole genome shotgun sequence	517..1159	enterobacteriales	IncX1	98.93	374 / 374	ABNVDC010000120.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313334 SAMN35985398-rid18561973.denovo.123, whole genome shotgun sequence	537..910																																																avrA	ABNVDC010000001.1	149422..150291	99.54	870	0						
GCA_032688995.1_PDT001791049.1_genomic.fna	Salmonella_enterica	0.5226	336.459 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVDB010000001.1 Salmonella enterica strain PNUSAS358464 SAMN35989712-rid18561983.denovo.01, whole genome shotgun sequence	831489..831926	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVDB010000038.1 Salmonella enterica strain PNUSAS358464 SAMN35989712-rid18561983.guided.26, whole genome shotgun sequence	6215..6652	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032689065.1_PDT001791045.1_genomic.fna	Salmonella_enterica	0.5224	521.157 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNVDF010000001.1 Salmonella enterica strain PNUSAS358461 SAMN35989719-rid18561683.denovo.01, whole genome shotgun sequence	683864..684301	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNVDF010000027.1 Salmonella enterica strain PNUSAS358461 SAMN35989719-rid18561683.guided.24, whole genome shotgun sequence	82..519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVDF010000002.1	563792..564661	99.77	870	0						
GCA_032689085.1_PDT001791042.1_genomic.fna	Salmonella_enterica	0.5229	269.597 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVDH010000001.1 Salmonella enterica strain PNUSAS358847 SAMN35991275-rid18561963.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVDH010000040.1 Salmonella enterica strain PNUSAS358847 SAMN35991275-rid18561963.guided.30, whole genome shotgun sequence	8077..8514	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVDH010000007.1	94085..94954	99.655	870	0						
GCA_032689105.1_PDT001791044.1_genomic.fna	Salmonella_enterica	0.5212	682.776 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNVDG010000001.1 Salmonella enterica strain PNUSAS358860 SAMN35991266-rid18561673.denovo.01, whole genome shotgun sequence	396826..397263	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNVDG010000023.1 Salmonella enterica strain PNUSAS358860 SAMN35991266-rid18561673.guided.17, whole genome shotgun sequence	13040..13477	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVDG010000002.1	544607..545475	99.425	870	0						
GCA_032689125.1_PDT001791039.1_genomic.fna	Salmonella_enterica	0.5222	335.442 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVDK010000001.1 Salmonella enterica strain PNUSAS358851 SAMN35991272-rid18561653.denovo.01, whole genome shotgun sequence	454795..455232	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVDK010000029.1 Salmonella enterica strain PNUSAS358851 SAMN35991272-rid18561653.guided.26, whole genome shotgun sequence	2925..3362	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVDK010000001.1	890799..891668	98.966	870	0						
GCA_032689145.1_PDT001791041.1_genomic.fna	Salmonella_enterica	0.5212	269.526 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVDI010000002.1 Salmonella enterica strain PNUSAS358567 SAMN35989954-rid18561663.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVDI010000050.1 Salmonella enterica strain PNUSAS358567 SAMN35989954-rid18561663.guided.16, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVDI010000017.1 Salmonella enterica strain PNUSAS358567 SAMN35989954-rid18561663.denovo.18, whole genome shotgun sequence	6854..7496	enterobacteriales	IncFII(S)	100	262 / 262	ABNVDI010000017.1 Salmonella enterica strain PNUSAS358567 SAMN35989954-rid18561663.denovo.18, whole genome shotgun sequence	22581..22842																																																avrA	ABNVDI010000007.1	95312..96180	100	869	0						
GCA_032689165.1_PDT001791040.1_genomic.fna	Salmonella_enterica	0.5205	490.112 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVDJ010000001.1 Salmonella enterica strain PNUSAS358809 SAMN35990937-rid18561953.denovo.01, whole genome shotgun sequence	780490..780927	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVDJ010000028.1 Salmonella enterica strain PNUSAS358809 SAMN35990937-rid18561953.guided.20, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVDJ010000019.1 Salmonella enterica strain PNUSAS358809 SAMN35990937-rid18561953.denovo.21, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNVDJ010000020.1 Salmonella enterica strain PNUSAS358809 SAMN35990937-rid18561953.denovo.23, whole genome shotgun sequence	3423..3684																																																avrA	ABNVDJ010000002.1	553623..554492	99.54	870	0						
GCA_032689185.1_PDT001791038.1_genomic.fna	Salmonella_enterica	0.5214	246.373 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVDL010000001.1 Salmonella enterica strain PNUSAS358855 SAMN35991269-rid18560333.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVDL010000032.1 Salmonella enterica strain PNUSAS358855 SAMN35991269-rid18560333.guided.29, whole genome shotgun sequence	1420..1857	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVDL010000023.1 Salmonella enterica strain PNUSAS358855 SAMN35991269-rid18560333.denovo.23, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNVDL010000025.1 Salmonella enterica strain PNUSAS358855 SAMN35991269-rid18560333.denovo.25, whole genome shotgun sequence	3392..3653																																																avrA	ABNVDL010000002.1	553648..554517	99.54	870	0						
GCA_032689225.1_PDT001791037.1_genomic.fna	Salmonella_enterica	0.5212	190.055 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVDM010000001.1 Salmonella enterica strain PNUSAS358562 SAMN35989916-rid18561643.denovo.01, whole genome shotgun sequence	368587..369024	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVDM010000045.1 Salmonella enterica strain PNUSAS358562 SAMN35989916-rid18561643.guided.33, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNVDM010000015.1 Salmonella enterica strain PNUSAS358562 SAMN35989916-rid18561643.denovo.15, whole genome shotgun sequence	108807..109449																																																																	
GCA_032689265.1_PDT001791032.1_genomic.fna	Salmonella_enterica	0.5228	386.241 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVDP010000001.1 Salmonella enterica strain PNUSAS358853 SAMN35991267-rid18561943.denovo.01, whole genome shotgun sequence	454702..455139	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVDP010000029.1 Salmonella enterica strain PNUSAS358853 SAMN35991267-rid18561943.guided.21, whole genome shotgun sequence	1138..1575	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVDP010000005.1	183135..184004	98.966	870	0						
GCA_032689285.1_PDT001791029.1_genomic.fna	Salmonella_enterica	0.5215	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVDS010000001.1 Salmonella enterica strain PNUSAS358852 SAMN35991273-rid18561593.denovo.01, whole genome shotgun sequence	706584..707021	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVDS010000027.1 Salmonella enterica strain PNUSAS358852 SAMN35991273-rid18561593.guided.20, whole genome shotgun sequence	4533..4970	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVDS010000018.1 Salmonella enterica strain PNUSAS358852 SAMN35991273-rid18561593.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNVDS010000015.1 Salmonella enterica strain PNUSAS358852 SAMN35991273-rid18561593.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNVDS010000002.1	553575..554444	99.54	870	0						
GCA_032689305.1_PDT001791028.1_genomic.fna	Salmonella_enterica	0.5207	354.456 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncN2	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVDT010000001.1 Salmonella enterica strain PNUSAS358863 SAMN35991261-rid18560313.denovo.01, whole genome shotgun sequence	663251..663688	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVDT010000032.1 Salmonella enterica strain PNUSAS358863 SAMN35991261-rid18560313.guided.25, whole genome shotgun sequence	10424..10861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNVDT010000018.1 Salmonella enterica strain PNUSAS358863 SAMN35991261-rid18560313.denovo.18, whole genome shotgun sequence	7556..8089	enterobacteriales	IncN2	96.44	477 / 477	ABNVDT010000022.1 Salmonella enterica strain PNUSAS358863 SAMN35991261-rid18560313.denovo.22, whole genome shotgun sequence	23409..23885																																																avrA	ABNVDT010000007.1	192358..193228	99.196	871	0						
GCA_032689325.1_PDT001791027.1_genomic.fna	Salmonella_enterica	0.5222	728.806 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVDU010000001.1 Salmonella enterica strain PNUSAS358859 SAMN35991264-rid18561583.denovo.01, whole genome shotgun sequence	458316..458753	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNVDU010000021.1 Salmonella enterica strain PNUSAS358859 SAMN35991264-rid18561583.guided.13, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVDU010000003.1	553810..554679	99.77	870	0						
GCA_032689345.1_PDT001791030.1_genomic.fna	Salmonella_enterica	0.5221	341.195 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVDR010000003.1 Salmonella enterica strain PNUSAS358862 SAMN35991260-rid18561933.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVDR010000038.1 Salmonella enterica strain PNUSAS358862 SAMN35991260-rid18561933.guided.31, whole genome shotgun sequence	5130..5567	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVDR010000022.1 Salmonella enterica strain PNUSAS358862 SAMN35991260-rid18561933.denovo.22, whole genome shotgun sequence	44740..45382	enterobacteriales	IncFII(S)	100	262 / 262	ABNVDR010000022.1 Salmonella enterica strain PNUSAS358862 SAMN35991260-rid18561933.denovo.22, whole genome shotgun sequence	29394..29655																																																avrA	ABNVDR010000001.1	446609..447477	100	869	0						
GCA_032689365.1_PDT001791026.1_genomic.fna	Salmonella_enterica	0.5209	380.104 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNVDW010000001.1 Salmonella enterica strain PNUSAS358858 SAMN35991263-rid18561573.denovo.01, whole genome shotgun sequence	684259..684696	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNVDW010000026.1 Salmonella enterica strain PNUSAS358858 SAMN35991263-rid18561573.guided.21, whole genome shotgun sequence	979..1416	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNVDW010000015.1 Salmonella enterica strain PNUSAS358858 SAMN35991263-rid18561573.denovo.15, whole genome shotgun sequence	34958..35491																																																						avrA	ABNVDW010000005.1	148520..149389	99.77	870	0						
GCA_032689385.1_PDT001791031.1_genomic.fna	Salmonella_enterica	0.5209	318.412 KB	6	aroC_92,dnaN_125,hemD_78,hisD_128,purE_138,sucA_9,thrA_141	463	3,10:e,h:l,w	4	aac(6')-Iaa,aac(2')-IIa,aac(6')-Iaa,aac(2')-IIa,fosA7,fosA7,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_125	hemD	100	100	hemD_78	hisD	100	100	hisD_128	purE	100	100	purE_138	sucA	100	100	sucA_9	thrA	100	100	thrA_141	3,10	e,h	l,w	Salmonella enterica subspecies enterica (subspecies I)	Meleagridis		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNVDQ010000001.1 Salmonella enterica strain PNUSAS358848 SAMN35991276-rid18561603.denovo.01, whole genome shotgun sequence	396952..397389	Amikacin, Tobramycin	NC_003197	aac(2')-IIa	98.72	783/783	ABNVDQ010000009.1 Salmonella enterica strain PNUSAS358848 SAMN35991276-rid18561603.denovo.09, whole genome shotgun sequence	131305..132087	Kasugamycin	AB669090	aac(6')-Iaa	98.86	438/438	ABNVDQ010000039.1 Salmonella enterica strain PNUSAS358848 SAMN35991276-rid18561603.guided.32, whole genome shotgun sequence	2946..3383	Amikacin, Tobramycin	NC_003197	aac(2')-IIa	98.72	783/783	ABNVDQ010000041.1 Salmonella enterica strain PNUSAS358848 SAMN35991276-rid18561603.guided.37, whole genome shotgun sequence	592..1374	Kasugamycin	AB669090	fosA7	96.45	423/423	ABNVDQ010000006.1 Salmonella enterica strain PNUSAS358848 SAMN35991276-rid18561603.denovo.06, whole genome shotgun sequence	158254..158676	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNVDQ010000038.1 Salmonella enterica strain PNUSAS358848 SAMN35991276-rid18561603.guided.30, whole genome shotgun sequence	4707..5129	Fosfomycin	LAPJ01000014	qnrB19	100	645/645	ABNVDQ010000030.1 Salmonella enterica strain PNUSAS358848 SAMN35991276-rid18561603.denovo.34, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNVDQ010000040.1 Salmonella enterica strain PNUSAS358848 SAMN35991276-rid18561603.guided.35, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNVDQ010000030.1 Salmonella enterica strain PNUSAS358848 SAMN35991276-rid18561603.denovo.34, whole genome shotgun sequence	1150..1280																																																						avrA	ABNVDQ010000002.1	124119..124988	98.851	870	0						
GCA_032689405.1_PDT001791025.1_genomic.fna	Salmonella_enterica	0.5218	327.9 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVDX010000001.1 Salmonella enterica strain PNUSAS358849 SAMN35991270-rid18561563.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVDX010000038.1 Salmonella enterica strain PNUSAS358849 SAMN35991270-rid18561563.guided.23, whole genome shotgun sequence	5987..6424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNVDX010000025.1 Salmonella enterica strain PNUSAS358849 SAMN35991270-rid18561563.denovo.28, whole genome shotgun sequence	1506..1636																																																						avrA	ABNVDX010000005.1	147026..147895	98.966	870	0						
GCA_032689425.1_PDT001791024.1_genomic.fna	Salmonella_enterica	0.5226	77.409 KB	21	aroC_533,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	2362	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_533	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVDV010000009.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313344 SAMN35985452-rid18561553.denovo.009, whole genome shotgun sequence	15511..15948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVDV010000127.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313344 SAMN35985452-rid18561553.guided.096, whole genome shotgun sequence	3560..3997	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVDV010000024.1	61433..62301	99.195	870	0						
GCA_032689485.1_PDT001791022.1_genomic.fna	Salmonella_enterica	0.5206	412.067 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVDZ010000001.1 Salmonella enterica strain PNUSAS358575 SAMN35989951-rid18561923.denovo.01, whole genome shotgun sequence	384595..385032	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVDZ010000068.1 Salmonella enterica strain PNUSAS358575 SAMN35989951-rid18561923.guided.27, whole genome shotgun sequence	11079..11516	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVDZ010000002.1	504322..505192	99.196	871	0						
GCA_032689545.1_PDT001791015.1_genomic.fna	Salmonella_enterica	0.522	188.496 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVEE010000001.1 Salmonella enterica strain PNUSAS358572 SAMN35989910-rid18561503.denovo.01, whole genome shotgun sequence	63930..64367	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVEE010000052.1 Salmonella enterica strain PNUSAS358572 SAMN35989910-rid18561503.guided.36, whole genome shotgun sequence	5005..5442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032689605.1_PDT001791017.1_genomic.fna	Salmonella_enterica	0.5211	304.698 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_19,thrA_1	679	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVEC010000003.1 Salmonella enterica strain PNUSAS358569 SAMN35989913-rid18561523.denovo.03, whole genome shotgun sequence	147992..148429	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVEC010000045.1 Salmonella enterica strain PNUSAS358569 SAMN35989913-rid18561523.guided.33, whole genome shotgun sequence	4657..5094	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVEC010000007.1	102072..102937	98.966	870	0						
GCA_032689645.1_PDT001791006.1_genomic.fna	Salmonella_enterica	0.522	244.38 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVEJ010000001.1 Salmonella enterica strain PNUSAS358844 SAMN35991228-rid18561443.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVEJ010000043.1 Salmonella enterica strain PNUSAS358844 SAMN35991228-rid18561443.guided.21, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVEJ010000007.1	39538..40407	99.655	870	0						
GCA_032689665.1_PDT001791008.1_genomic.fna	Salmonella_enterica	0.5176	238.813 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	14	aac(6')-Iaa,armA,aph(6)-Id,aph(3'')-Ib,aadA5,aph(3')-Ia,aadA2,aac(6')-Iaa,armA,aph(6)-Id,aph(3'')-Ib,aadA5,aph(3')-Ia,aadA2,blaTEM-1B,blaTEM-1B,msr(E),mph(E),msr(E),mph(E),qnrB19,qnrB19,sul2,sul1,sul2,sul1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	0		4	Col(pHAD28),Col440I,Col440I,IncHI2,IncHI2A	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVEH010000001.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.01, whole genome shotgun sequence	458966..459403	Amikacin, Tobramycin	NC_003197	armA	100	774/774	ABNVEH010000042.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.46, whole genome shotgun sequence	6435..7208	Amikacin, Gentamicin, Tobramycin, Isepamicin, Netilmicin	AY220558	aph(6)-Id	100	837/837	ABNVEH010000048.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.52, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVEH010000048.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.52, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aadA5	100	789/789	ABNVEH010000049.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.54, whole genome shotgun sequence	1345..2133	Spectinomycin, Streptomycin	AF137361	aph(3')-Ia	100	816/816	ABNVEH010000062.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.72, whole genome shotgun sequence	48..863	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	X62115	aadA2	100	792/792	ABNVEH010000065.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.77, whole genome shotgun sequence	5..796	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	100	438/438	ABNVEH010000076.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.25, whole genome shotgun sequence	26509..26946	Amikacin, Tobramycin	NC_003197	armA	100	774/774	ABNVEH010000079.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.45, whole genome shotgun sequence	3361..4134	Amikacin, Gentamicin, Tobramycin, Isepamicin, Netilmicin	AY220558	aph(6)-Id	100	837/837	ABNVEH010000080.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.53, whole genome shotgun sequence	2930..3766	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVEH010000080.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.53, whole genome shotgun sequence	2127..2930	Streptomycin	AF321551	aadA5	100	789/789	ABNVEH010000083.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.63, whole genome shotgun sequence	1386..2174	Spectinomycin, Streptomycin	AF137361	aph(3')-Ia	100	816/816	ABNVEH010000086.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.73, whole genome shotgun sequence	106..921	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	X62115	aadA2	100	792/792	ABNVEH010000087.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.74, whole genome shotgun sequence	46..837	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABNVEH010000057.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.66, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNVEH010000084.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.65, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	msr(E)	100	1476/1476	ABNVEH010000042.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.46, whole genome shotgun sequence	2661..4136	Erythromycin, Azithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S	FR751518	mph(E)	100	885/885	ABNVEH010000042.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.46, whole genome shotgun sequence	1721..2605	Erythromycin	DQ839391	msr(E)	100	1476/1476	ABNVEH010000079.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.45, whole genome shotgun sequence	6433..7908	Erythromycin, Azithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S	FR751518	mph(E)	100	885/885	ABNVEH010000079.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.45, whole genome shotgun sequence	7964..8848	Erythromycin	DQ839391	qnrB19	100	645/645	ABNVEH010000051.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.56, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNVEH010000081.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.61, whole genome shotgun sequence	620..1264	Ciprofloxacin	EU432277	sul2	100	816/816	ABNVEH010000048.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.52, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABNVEH010000049.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.54, whole genome shotgun sequence	2642..3481	Sulfamethoxazole	U12338	sul2	100	816/816	ABNVEH010000080.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.53, whole genome shotgun sequence	1251..2066	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABNVEH010000085.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.70, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	dfrA1	99.79	474/474	ABNVEH010000049.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.54, whole genome shotgun sequence	355..828	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNVEH010000049.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.54, whole genome shotgun sequence	355..828	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNVEH010000049.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.54, whole genome shotgun sequence	355..828	Trimethoprim	X00926	dfrA1	99.79	474/474	ABNVEH010000083.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.63, whole genome shotgun sequence	396..869	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNVEH010000083.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.63, whole genome shotgun sequence	396..869	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNVEH010000083.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.63, whole genome shotgun sequence	396..869	Trimethoprim	X00926																																																																																																																																																																																																																																																												enterobacteriales	Col(pHAD28)	100	131 / 131	ABNVEH010000051.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.56, whole genome shotgun sequence	1522..1652	enterobacteriales	Col440I	94.74	114 / 114	ABNVEH010000047.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.51, whole genome shotgun sequence	2725..2838		enterobacteriales	Col440I	91.23	114 / 114	ABNVEH010000081.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.guided.61, whole genome shotgun sequence	3..116		enterobacteriales	IncHI2	100	327 / 327	ABNVEH010000015.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.15, whole genome shotgun sequence	14619..14945		enterobacteriales	IncHI2A	99.84	630 / 630	ABNVEH010000015.1 Salmonella enterica strain PNUSAS358845 SAMN35991227-rid18560273.denovo.15, whole genome shotgun sequence	29810..30439																											avrA	ABNVEH010000002.1	434659..435528	99.885	870	0						
GCA_032689845.1_PDT001790992.1_genomic.fna	Salmonella_enterica	0.5218	219.479 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVET010000001.1 Salmonella enterica strain PNUSAS358568 SAMN35989948-rid18561343.denovo.01, whole genome shotgun sequence	492038..492475	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVET010000049.1 Salmonella enterica strain PNUSAS358568 SAMN35989948-rid18561343.guided.38, whole genome shotgun sequence	3567..4004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVET010000031.1 Salmonella enterica strain PNUSAS358568 SAMN35989948-rid18561343.denovo.31, whole genome shotgun sequence	24670..25312	enterobacteriales	IncFII(S)	100	262 / 262	ABNVET010000031.1 Salmonella enterica strain PNUSAS358568 SAMN35989948-rid18561343.denovo.31, whole genome shotgun sequence	9324..9585																																																avrA	ABNVET010000003.1	174642..175511	99.885	870	0						
GCA_032689965.1_PDT001790981.1_genomic.fna	Salmonella_enterica	0.5208	696.428 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVEZ010000001.1 Salmonella enterica strain PNUSAS358811 SAMN35990940-rid18561263.denovo.01, whole genome shotgun sequence	643174..643611	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVEZ010000022.1 Salmonella enterica strain PNUSAS358811 SAMN35990940-rid18561263.guided.16, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032689985.1_PDT001790980.1_genomic.fna	Salmonella_enterica	0.5214	696.605 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVFA010000001.1 Salmonella enterica strain PNUSAS358806 SAMN35990935-rid18561253.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVFA010000025.1 Salmonella enterica strain PNUSAS358806 SAMN35990935-rid18561253.guided.16, whole genome shotgun sequence	24937..25374	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVFA010000014.1 Salmonella enterica strain PNUSAS358806 SAMN35990935-rid18561253.denovo.14, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	ABNVFA010000018.1 Salmonella enterica strain PNUSAS358806 SAMN35990935-rid18561253.denovo.20, whole genome shotgun sequence	3390..3651																																																avrA	ABNVFA010000002.1	553636..554505	99.54	870	0						
GCA_032690025.1_PDT001790975.1_genomic.fna	Salmonella_enterica	0.5213	363.635 KB	6	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVFB010000003.1 Salmonella enterica strain PNUSAS358807 SAMN35990934-rid18561873.denovo.03, whole genome shotgun sequence	380333..380770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVFB010000037.1 Salmonella enterica strain PNUSAS358807 SAMN35990934-rid18561873.guided.27, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032690045.1_PDT001790983.1_genomic.fna	Salmonella_enterica	0.5212	390.838 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVEY010000001.1 Salmonella enterica strain PNUSAS358841 SAMN35990987-rid18560223.denovo.01, whole genome shotgun sequence	560694..561131	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVEY010000033.1 Salmonella enterica strain PNUSAS358841 SAMN35990987-rid18560223.guided.20, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVEY010000010.1	140191..141059	99.195	870	0						
GCA_032690065.1_PDT001790972.1_genomic.fna	Salmonella_enterica	0.5216	392.714 KB	4	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_58,thrA_4	239	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_4	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVFE010000001.1 Salmonella enterica strain PNUSAS358801 SAMN35990938-rid18561203.denovo.01, whole genome shotgun sequence	354884..355321	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVFE010000038.1 Salmonella enterica strain PNUSAS358801 SAMN35990938-rid18561203.guided.17, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032690085.1_PDT001790970.1_genomic.fna	Salmonella_enterica	0.5197	278.672 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,floR,floR,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),tet(A),tet(A),tet(A)	0		2	IncI2(Delta),p0111	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVFG010000001.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.denovo.01, whole genome shotgun sequence	590556..590993	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNVFG010000045.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.denovo.51, whole genome shotgun sequence	1233..2063	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	ABNVFG010000045.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.denovo.51, whole genome shotgun sequence	2069..2872	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNVFG010000060.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.guided.34, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNVFG010000063.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.guided.48, whole genome shotgun sequence	1920..2750	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	ABNVFG010000063.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.guided.48, whole genome shotgun sequence	1111..1914	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNVFG010000045.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.denovo.51, whole genome shotgun sequence	142..1002	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNVFG010000063.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.guided.48, whole genome shotgun sequence	2981..3841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.11	1214/1215	ABNVFG010000044.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.denovo.50, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNVFG010000062.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.guided.47, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNVFG010000037.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.denovo.41, whole genome shotgun sequence	3598..4254	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNVFG010000061.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.guided.40, whole genome shotgun sequence	1055..1711	Ciprofloxacin	AB187515	sul2	100	816/816	ABNVFG010000045.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.denovo.51, whole genome shotgun sequence	2933..3748	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNVFG010000063.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.guided.48, whole genome shotgun sequence	235..1050	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNVFG010000046.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.denovo.52, whole genome shotgun sequence	554..1828	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1200/1200	ABNVFG010000064.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.guided.55, whole genome shotgun sequence	650..1849	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVFG010000065.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.guided.56, whole genome shotgun sequence	650..1849	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1275/1275	ABNVFG010000066.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.guided.58, whole genome shotgun sequence	575..1849	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNVFG010000067.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.guided.59, whole genome shotgun sequence	575..1849	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																							enterobacteriales	IncI2(Delta)	98.42	316 / 316	ABNVFG010000025.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.denovo.25, whole genome shotgun sequence	29077..29392	enterobacteriales	p0111	98.64	885 / 885	ABNVFG010000030.1 Salmonella enterica strain PNUSAS358804 SAMN35990932-rid18561183.denovo.30, whole genome shotgun sequence	9879..10763																																																avrA	ABNVFG010000002.1	508227..509096	99.885	870	0						
GCA_032690165.1_PDT001790967.1_genomic.fna	Salmonella_enterica	0.5201	703.656 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVFI010000001.1 Salmonella enterica strain PNUSAS358577 SAMN35989909-rid18561163.denovo.01, whole genome shotgun sequence	645096..645533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNVFI010000016.1 Salmonella enterica strain PNUSAS358577 SAMN35989909-rid18561163.guided.13, whole genome shotgun sequence	8806..9243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVFI010000004.1	561262..562132	99.656	871	0						
GCA_032690265.1_PDT001790958.1_genomic.fna	Salmonella_enterica	0.5221	693.892 KB	3	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVFP010000001.1 Salmonella enterica strain PNUSAS358810 SAMN35990939-rid18560173.denovo.01, whole genome shotgun sequence	679311..679748	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVFP010000020.1 Salmonella enterica strain PNUSAS358810 SAMN35990939-rid18560173.guided.16, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVFP010000003.1	509915..510781	99.08	870	0						
GCA_032690285.1_PDT001790960.1_genomic.fna	Salmonella_enterica	0.5215	440.244 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVFO010000001.1 Salmonella enterica strain PNUSAS358802 SAMN35990933-rid18561113.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNVFO010000028.1 Salmonella enterica strain PNUSAS358802 SAMN35990933-rid18561113.guided.14, whole genome shotgun sequence	10252..10689	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVFO010000002.1	553523..554392	99.655	870	0						
GCA_032690305.1_PDT001790962.1_genomic.fna	Salmonella_enterica	0.521	406.504 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVFL010000001.1 Salmonella enterica strain PNUSAS358803 SAMN35990931-rid18561133.denovo.01, whole genome shotgun sequence	158994..159431	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVFL010000029.1 Salmonella enterica strain PNUSAS358803 SAMN35990931-rid18561133.guided.20, whole genome shotgun sequence	20663..21100	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNVFL010000022.1 Salmonella enterica strain PNUSAS358803 SAMN35990931-rid18561133.denovo.25, whole genome shotgun sequence	3229..3380	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVFL010000017.1 Salmonella enterica strain PNUSAS358803 SAMN35990931-rid18561133.denovo.17, whole genome shotgun sequence	6818..7460		enterobacteriales	IncFII(S)	100	262 / 262	ABNVFL010000017.1 Salmonella enterica strain PNUSAS358803 SAMN35990931-rid18561133.denovo.17, whole genome shotgun sequence	12910..13171																																									avrA	ABNVFL010000002.1	553190..554059	99.54	870	0						
GCA_032690505.1_PDT001940408.1_genomic.fna	Salmonella_enterica	0.5219	325.044 KB	6	aroC_139,dnaN_174,hemD_68,hisD_132*,purE_133,sucA_9,thrA_168	578*	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_139	dnaN	100	100	dnaN_174	hemD	100	100	hemD_68	hisD	99.8003992015968	100	hisD_132*	purE	100	100	purE_133	sucA	100	100	sucA_9	thrA	100	100	thrA_168	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQEGN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00028888 SAMN37819681-rid19792383.denovo.01, whole genome shotgun sequence	145161..145598	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQEGN010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00028888 SAMN37819681-rid19792383.guided.32, whole genome shotgun sequence	14378..14815	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEGN010000008.1	113574..114443	99.195	870	0						
GCA_032690525.1_PDT001940406.1_genomic.fna	Salmonella_enterica	0.5199	203.759 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEGO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028941 SAMN37819683-rid19801593.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEGO010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028941 SAMN37819683-rid19801593.guided.15, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEGO010000003.1	149541..150410	99.77	870	0						
GCA_032690565.1_PDT001940398.1_genomic.fna	Salmonella_enterica	0.5208	284.086 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEGP010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029178 SAMN37819690-rid19799553.denovo.02, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEGP010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029178 SAMN37819690-rid19799553.guided.24, whole genome shotgun sequence	2543..2980	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEGP010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029178 SAMN37819690-rid19799553.denovo.33, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEGP010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029178 SAMN37819690-rid19799553.denovo.21, whole genome shotgun sequence	40527..41169		enterobacteriales	IncFII(S)	100	262 / 262	DAQEGP010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029178 SAMN37819690-rid19799553.denovo.21, whole genome shotgun sequence	55552..55813																																									avrA	DAQEGP010000001.1	553563..554432	99.54	870	0						
GCA_032690585.1_PDT001940396.1_genomic.fna	Salmonella_enterica	0.5208	142.274 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEGQ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00029191 SAMN37819692-rid19801583.denovo.02, whole genome shotgun sequence	382078..382515	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEGQ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00029191 SAMN37819692-rid19801583.guided.36, whole genome shotgun sequence	26752..27189	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEGQ010000003.1	124099..124968	99.77	870	0						
GCA_032690605.1_PDT001940394.1_genomic.fna	Salmonella_enterica	0.5222	136.362 KB	9	aroC_15,dnaN_126,hemD_101,hisD_88,purE_740,sucA_19,thrA_18	3985	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_126	hemD	100	100	hemD_101	hisD	100	100	hisD_88	purE	100	100	purE_740	sucA	100	100	sucA_19	thrA	100	100	thrA_18	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQEGR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00029283 SAMN37819694-rid19801573.denovo.01, whole genome shotgun sequence	245037..245474	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQEGR010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00029283 SAMN37819694-rid19801573.guided.28, whole genome shotgun sequence	42431..42868	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQEGR010000022.1	39478..40347	99.77	870	0						
GCA_032690625.1_PDT001940388.1_genomic.fna	Salmonella_enterica	0.5205	131.601 KB	13	aroC_454,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	1925	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		4	Col440I,IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_454	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEGS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041493 SAMN37819786-rid19799543.denovo.01, whole genome shotgun sequence	42780..43217	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEGS010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041493 SAMN37819786-rid19799543.guided.29, whole genome shotgun sequence	31200..31637	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	DAQEGS010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041493 SAMN37819786-rid19799543.denovo.62, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQEGS010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041493 SAMN37819786-rid19799543.guided.61, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col440I	94.74	114 / 114	DAQEGS010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041493 SAMN37819786-rid19799543.denovo.65, whole genome shotgun sequence	1981..2094	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEGS010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041493 SAMN37819786-rid19799543.denovo.35, whole genome shotgun sequence	40532..41174		enterobacteriales	IncFII(S)	100	262 / 262	DAQEGS010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041493 SAMN37819786-rid19799543.denovo.54, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	95.76	377 / 377	DAQEGS010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041493 SAMN37819786-rid19799543.denovo.55, whole genome shotgun sequence	4747..5123																																		avrA	DAQEGS010000009.1	60945..61814	99.54	870	0						
GCA_032690645.1_PDT001940386.1_genomic.fna	Salmonella_enterica	0.5212	165.188 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEGT010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022121 SAMN37819536-rid19801563.denovo.15, whole genome shotgun sequence	62406..62843	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEGT010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022121 SAMN37819536-rid19801563.guided.29, whole genome shotgun sequence	13872..14309	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEGT010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022121 SAMN37819536-rid19801563.denovo.34, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	DAQEGT010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022121 SAMN37819536-rid19801563.denovo.47, whole genome shotgun sequence	3413..3674																																																avrA	DAQEGT010000002.1	43554..44423	99.54	870	0						
GCA_032690665.1_PDT001940384.1_genomic.fna	Salmonella_enterica	0.5215	146.591 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEGV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041595 SAMN37819789-rid19801553.denovo.01, whole genome shotgun sequence	17236..17673	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEGV010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041595 SAMN37819789-rid19801553.guided.38, whole genome shotgun sequence	14137..14574	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																											avrA	DAQEGV010000006.1	115402..116271	99.54	870	0						
GCA_032690685.1_PDT001940349.1_genomic.fna	Salmonella_enterica	0.5214	188.064 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEGY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021304 SAMN37819512-rid19801513.denovo.01, whole genome shotgun sequence	293252..293689	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEGY010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021304 SAMN37819512-rid19801513.guided.23, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEGY010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021304 SAMN37819512-rid19801513.denovo.26, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	DAQEGY010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021304 SAMN37819512-rid19801513.denovo.37, whole genome shotgun sequence	3418..3679																																																avrA	DAQEGY010000005.1	140720..141589	99.54	870	0						
GCA_032690705.1_PDT001940366.1_genomic.fna	Salmonella_enterica	0.5217	141.29 KB	10	aroC_114,dnaN_3,hemD_8,hisD_114,purE_76,sucA_9,thrA_109	312	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I,Col440I	aroC	100	100	aroC_114	dnaN	100	100	dnaN_3	hemD	100	100	hemD_8	hisD	100	100	hisD_114	purE	100	100	purE_76	sucA	100	100	sucA_9	thrA	100	100	thrA_109	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQEGX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00044178 SAMN37819806-rid19799523.denovo.01, whole genome shotgun sequence	578112..578549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQEGX010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00044178 SAMN37819806-rid19799523.guided.43, whole genome shotgun sequence	16417..16854	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQEGX010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00044178 SAMN37819806-rid19799523.denovo.61, whole genome shotgun sequence	547..675	enterobacteriales	Col440I	90.27	113 / 114	DAQEGX010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00044178 SAMN37819806-rid19799523.denovo.56, whole genome shotgun sequence	3345..3457		enterobacteriales	Col440I	95.61	114 / 114	DAQEGX010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00044178 SAMN37819806-rid19799523.denovo.57, whole genome shotgun sequence	2692..2805																																									avrA	DAQEGX010000007.1	96660..97529	99.08	870	0						
GCA_032690725.1_PDT001940354.1_genomic.fna	Salmonella_enterica	0.522	57.348 KB	26	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEGW010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045864 SAMN37819903-rid19801523.denovo.064, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEGW010000154.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045864 SAMN37819903-rid19801523.guided.067, whole genome shotgun sequence	15474..15911	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEGW010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045864 SAMN37819903-rid19801523.denovo.090, whole genome shotgun sequence	2008..2650	enterobacteriales	IncFII(S)	100	262 / 262	DAQEGW010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045864 SAMN37819903-rid19801523.denovo.041, whole genome shotgun sequence	29403..29664		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQEGW010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045864 SAMN37819903-rid19801523.denovo.100, whole genome shotgun sequence	13027..13168																																									avrA	DAQEGW010000008.1	105326..106195	99.885	870	0						
GCA_032690745.1_PDT001940374.1_genomic.fna	Salmonella_enterica	0.5217	126.527 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEGU010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00042397 SAMN37819798-rid19801533.denovo.13, whole genome shotgun sequence	25625..26062	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEGU010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00042397 SAMN37819798-rid19801533.guided.33, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																											avrA	DAQEGU010000008.1	60945..61814	99.54	870	0						
GCA_032690765.1_PDT001940343.1_genomic.fna	Salmonella_enterica	0.5231	54.672 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEGZ010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045895 SAMN37819912-rid19793243.denovo.065, whole genome shotgun sequence	12500..12937	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEGZ010000167.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045895 SAMN37819912-rid19793243.guided.059, whole genome shotgun sequence	15676..16113	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEGZ010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045895 SAMN37819912-rid19793243.denovo.007, whole genome shotgun sequence	44675..45317	enterobacteriales	IncFII(S)	100	262 / 262	DAQEGZ010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045895 SAMN37819912-rid19793243.denovo.007, whole genome shotgun sequence	60402..60663																																																avrA	DAQEGZ010000003.1	105291..106160	99.885	870	0						
GCA_032690785.1_PDT001940341.1_genomic.fna	Salmonella_enterica	0.5222	71.168 KB	25	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEHA010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045898 SAMN37819914-rid19794423.denovo.029, whole genome shotgun sequence	11328..11765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEHA010000144.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045898 SAMN37819914-rid19794423.guided.033, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEHA010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045898 SAMN37819914-rid19794423.denovo.010, whole genome shotgun sequence	14689..15331	enterobacteriales	IncFII(S)	100	262 / 262	DAQEHA010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045898 SAMN37819914-rid19794423.denovo.010, whole genome shotgun sequence	30416..30677																																																avrA	DAQEHA010000004.1	105001..105870	99.885	870	0						
GCA_032690805.1_PDT001940329.1_genomic.fna	Salmonella_enterica	0.5217	71.559 KB	21	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEHC010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046015 SAMN37819925-rid19801503.denovo.018, whole genome shotgun sequence	25658..26095	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEHC010000120.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046015 SAMN37819925-rid19801503.guided.049, whole genome shotgun sequence	15647..16084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEHC010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046015 SAMN37819925-rid19801503.denovo.098, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEHC010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046015 SAMN37819925-rid19801503.denovo.031, whole genome shotgun sequence	35848..36490		enterobacteriales	IncFII(S)	100	262 / 262	DAQEHC010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046015 SAMN37819925-rid19801503.denovo.031, whole genome shotgun sequence	50873..51134																																									avrA	DAQEHC010000006.1	43554..44423	99.54	870	0						
GCA_032690825.1_PDT001940339.1_genomic.fna	Salmonella_enterica	0.5224	58.495 KB	27	aroC_183,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	568	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_183	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEHB010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045901 SAMN37819916-rid19799513.denovo.018, whole genome shotgun sequence	11336..11773	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEHB010000167.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045901 SAMN37819916-rid19799513.guided.032, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQEHB010000002.1	105261..106130	99.885	870	0						
GCA_032690865.1_PDT001940319.1_genomic.fna	Salmonella_enterica	0.5212	93.215 KB	16	aroC_183,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	568	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_183	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEHE010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047116 SAMN37820020-rid19801493.denovo.002, whole genome shotgun sequence	12525..12962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEHE010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047116 SAMN37820020-rid19801493.guided.041, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQEHE010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047116 SAMN37820020-rid19801493.denovo.024, whole genome shotgun sequence	67751..67892																																																						avrA	DAQEHE010000007.1	95251..96120	99.885	870	0						
GCA_032690885.1_PDT001940321.1_genomic.fna	Salmonella_enterica	0.5191	73.388 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(29),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEHD010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047099 SAMN37820018-rid19794413.denovo.003, whole genome shotgun sequence	11321..11758	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEHD010000138.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047099 SAMN37820018-rid19794413.guided.054, whole genome shotgun sequence	31110..31547	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEHD010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047099 SAMN37820018-rid19794413.denovo.010, whole genome shotgun sequence	14689..15331	enterobacteriales	IncFII(29)	97.68	259 / 259	DAQEHD010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047099 SAMN37820018-rid19794413.denovo.030, whole genome shotgun sequence	41806..42064		enterobacteriales	IncFII(S)	100	262 / 262	DAQEHD010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047099 SAMN37820018-rid19794413.denovo.010, whole genome shotgun sequence	30416..30677		enterobacteriales	IncI2(Delta)	97.15	316 / 316	DAQEHD010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047099 SAMN37820018-rid19794413.denovo.034, whole genome shotgun sequence	29709..30024																																		avrA	DAQEHD010000008.1	105294..106163	99.885	870	0						
GCA_032690905.1_PDT001940311.1_genomic.fna	Salmonella_enterica	0.521	258.205 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEHF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023037 SAMN37819560-rid19799503.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEHF010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023037 SAMN37819560-rid19799503.guided.20, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEHF010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023037 SAMN37819560-rid19799503.denovo.22, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	DAQEHF010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023037 SAMN37819560-rid19799503.denovo.22, whole genome shotgun sequence	4416..4677																																																avrA	DAQEHF010000008.1	140720..141589	99.54	870	0						
GCA_032690945.1_PDT001940301.1_genomic.fna	Salmonella_enterica	0.5213	178.971 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEHG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047573 SAMN37820037-rid19799493.denovo.01, whole genome shotgun sequence	254721..255158	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEHG010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047573 SAMN37820037-rid19799493.guided.26, whole genome shotgun sequence	10146..10583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEHG010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047573 SAMN37820037-rid19799493.denovo.25, whole genome shotgun sequence	48440..49082	enterobacteriales	IncFII(S)	100	262 / 262	DAQEHG010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047573 SAMN37820037-rid19799493.denovo.25, whole genome shotgun sequence	64167..64428																																																avrA	DAQEHG010000004.1	123601..124470	99.885	870	0						
GCA_032691545.1_PDT001940378.1_genomic.fna	Salmonella_enterica	0.5227	101.899 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEHH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041918 SAMN37819795-rid19799533.denovo.01, whole genome shotgun sequence	175691..176128	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEHH010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041918 SAMN37819795-rid19799533.guided.30, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEHH010000010.1	124156..125025	99.655	870	0						
GCA_032691565.1_PDT001940331.1_genomic.fna	Salmonella_enterica	0.5227	55.367 KB	28	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEHK010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046009 SAMN37819923-rid19793233.denovo.023, whole genome shotgun sequence	12535..12972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEHK010000176.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046009 SAMN37819923-rid19793233.guided.028, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEHK010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046009 SAMN37819923-rid19793233.denovo.029, whole genome shotgun sequence	44739..45381	enterobacteriales	IncFII(S)	100	262 / 262	DAQEHK010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046009 SAMN37819923-rid19793233.denovo.029, whole genome shotgun sequence	29393..29654																																																avrA	DAQEHK010000006.1	99943..100812	99.885	870	0						
GCA_032691585.1_PDT001940372.1_genomic.fna	Salmonella_enterica	0.5218	82.6 KB	17	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEHI010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00042623 SAMN37819800-rid19805263.denovo.006, whole genome shotgun sequence	14103..14540	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEHI010000104.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00042623 SAMN37819800-rid19805263.guided.065, whole genome shotgun sequence	14151..14588	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	Col156	95.45	154 / 154	DAQEHI010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00042623 SAMN37819800-rid19805263.denovo.083, whole genome shotgun sequence	483..636	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEHI010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00042623 SAMN37819800-rid19805263.denovo.031, whole genome shotgun sequence	40527..41169		enterobacteriales	IncFII(S)	100	262 / 262	DAQEHI010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00042623 SAMN37819800-rid19805263.denovo.077, whole genome shotgun sequence	3418..3679																																									avrA	DAQEHI010000004.1	115402..116271	99.54	870	0						
GCA_032691595.1_PDT001940337.1_genomic.fna	Salmonella_enterica	0.5209	205.131 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEHJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022449 SAMN37819549-rid19802523.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEHJ010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022449 SAMN37819549-rid19802523.guided.34, whole genome shotgun sequence	9301..9738	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEHJ010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022449 SAMN37819549-rid19802523.denovo.26, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	DAQEHJ010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022449 SAMN37819549-rid19802523.denovo.26, whole genome shotgun sequence	51883..52144		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQEHJ010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022449 SAMN37819549-rid19802523.denovo.25, whole genome shotgun sequence	21117..21258																																									avrA	DAQEHJ010000008.1	115432..116301	99.54	870	0						
GCA_032691625.1_PDT001940309.1_genomic.fna	Salmonella_enterica	0.5217	150.649 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_1113,thrA_2	7910	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_1113	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEHL010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047436 SAMN37820029-rid19801483.denovo.02, whole genome shotgun sequence	13073..13510	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEHL010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047436 SAMN37820029-rid19801483.guided.28, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEHL010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047436 SAMN37820029-rid19801483.denovo.18, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQEHL010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047436 SAMN37820029-rid19801483.denovo.18, whole genome shotgun sequence	60371..60632																																																avrA	DAQEHL010000003.1	108259..109128	99.885	870	0						
GCA_032691645.1_PDT001940299.1_genomic.fna	Salmonella_enterica	0.5213	166.464 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEHM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00047615 SAMN37820038-rid19801473.denovo.01, whole genome shotgun sequence	291588..292025	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEHM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00047615 SAMN37820038-rid19801473.guided.28, whole genome shotgun sequence	24989..25426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEHM010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00047615 SAMN37820038-rid19801473.denovo.40, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEHM010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00047615 SAMN37820038-rid19801473.denovo.24, whole genome shotgun sequence	40532..41174		enterobacteriales	IncFII(S)	100	262 / 262	DAQEHM010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00047615 SAMN37820038-rid19801473.denovo.24, whole genome shotgun sequence	55557..55818																																									avrA	DAQEHM010000005.1	140775..141644	99.54	870	0						
GCA_032691665.1_PDT001940291.1_genomic.fna	Salmonella_enterica	0.5211	112.464 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEHO010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049576 SAMN37820132-rid19799483.denovo.29, whole genome shotgun sequence	12553..12990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEHO010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049576 SAMN37820132-rid19799483.guided.10, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEHO010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049576 SAMN37820132-rid19799483.denovo.16, whole genome shotgun sequence	48422..49064	enterobacteriales	IncFII(S)	100	262 / 262	DAQEHO010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049576 SAMN37820132-rid19799483.denovo.16, whole genome shotgun sequence	64149..64410																																																avrA	DAQEHO010000003.1	108299..109168	99.885	870	0						
GCA_032691685.1_PDT001940272.1_genomic.fna	Salmonella_enterica	0.5228	149.978 KB	11	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_12	434	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_12	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQEHN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00024032 SAMN37819576-rid19801463.denovo.01, whole genome shotgun sequence	12517..12954	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQEHN010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00024032 SAMN37819576-rid19801463.guided.30, whole genome shotgun sequence	42403..42840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	95.07	446 / 445	DAQEHN010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00024032 SAMN37819576-rid19801463.denovo.26, whole genome shotgun sequence	52341..52785	enterobacteriales	IncFII(Yp)	91.71	217 / 230	DAQEHN010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00024032 SAMN37819576-rid19801463.denovo.26, whole genome shotgun sequence	51868..52080																																																avrA	DAQEHN010000013.1	60935..61804	99.31	870	0						
GCA_032691705.1_PDT001940270.1_genomic.fna	Salmonella_enterica	0.5227	80.868 KB	21	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEHP010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021435 SAMN37819515-rid19802513.denovo.028, whole genome shotgun sequence	12504..12941	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEHP010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021435 SAMN37819515-rid19802513.guided.084, whole genome shotgun sequence	4875..5312	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEHP010000043.1	39538..40407	99.655	870	0						
GCA_032691725.1_PDT001940266.1_genomic.fna	Salmonella_enterica	0.5206	171.325 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEHQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00024519 SAMN37819581-rid19793223.denovo.01, whole genome shotgun sequence	302683..303120	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEHQ010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00024519 SAMN37819581-rid19793223.guided.27, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEHQ010000004.1	124064..124933	99.655	870	0						
GCA_032691745.1_PDT001940260.1_genomic.fna	Salmonella_enterica	0.5212	131.126 KB	14	aroC_454,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	1925	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_454	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEHT010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030016 SAMN37819699-rid19802503.denovo.17, whole genome shotgun sequence	62408..62845	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEHT010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030016 SAMN37819699-rid19802503.guided.27, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEHT010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030016 SAMN37819699-rid19802503.denovo.35, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	DAQEHT010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030016 SAMN37819699-rid19802503.denovo.61, whole genome shotgun sequence	3420..3681																																																avrA	DAQEHT010000003.1	142397..143266	99.54	870	0						
GCA_032691765.1_PDT001940262.1_genomic.fna	Salmonella_enterica	0.5214	170.245 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEHR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021698 SAMN37819527-rid19801453.denovo.01, whole genome shotgun sequence	293253..293690	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEHR010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021698 SAMN37819527-rid19801453.guided.30, whole genome shotgun sequence	24989..25426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEHR010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021698 SAMN37819527-rid19801453.denovo.27, whole genome shotgun sequence	40528..41170	enterobacteriales	IncFII(S)	100	262 / 262	DAQEHR010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021698 SAMN37819527-rid19801453.denovo.40, whole genome shotgun sequence	3423..3684																																																avrA	DAQEHR010000007.1	115337..116206	99.54	870	0						
GCA_032691785.1_PDT001940256.1_genomic.fna	Salmonella_enterica	0.5206	147.403 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEHU010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030499 SAMN37819703-rid19793213.denovo.36, whole genome shotgun sequence	20193..20630	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEHU010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030499 SAMN37819703-rid19793213.guided.38, whole genome shotgun sequence	14089..14526	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEHU010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030499 SAMN37819703-rid19793213.denovo.33, whole genome shotgun sequence	40535..41177	enterobacteriales	IncFII(S)	100	262 / 262	DAQEHU010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030499 SAMN37819703-rid19793213.denovo.50, whole genome shotgun sequence	3412..3673		enterobacteriales	IncX1	98.4	374 / 374	DAQEHU010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030499 SAMN37819703-rid19793213.denovo.37, whole genome shotgun sequence	10523..10896																																									avrA	DAQEHU010000005.1	115387..116256	99.54	870	0						
GCA_032691805.1_PDT001940264.1_genomic.fna	Salmonella_enterica	0.52	181.602 KB	10	aroC_123,dnaN_73,hemD_97,hisD_121,purE_6,sucA_120,thrA_72	601	7:k:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	5	Col(pHAD28),Col(pHAD28),Col440I,IncFIA(HI1),IncFIB(K),IncR	aroC	100	100	aroC_123	dnaN	100	100	dnaN_73	hemD	100	100	hemD_97	hisD	100	100	hisD_121	purE	100	100	purE_6	sucA	100	100	sucA_120	thrA	100	100	thrA_72	7	k	1,2	Salmonella enterica subspecies enterica (subspecies I)	Galiema		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQEHS010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00024782 SAMN37819583-rid19799473.denovo.05, whole genome shotgun sequence	99013..99450	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQEHS010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00024782 SAMN37819583-rid19799473.guided.17, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.02	129 / 131	DAQEHS010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00024782 SAMN37819583-rid19799473.denovo.56, whole genome shotgun sequence	1435..1563	enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQEHS010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00024782 SAMN37819583-rid19799473.denovo.61, whole genome shotgun sequence	1445..1573		enterobacteriales	Col440I	90.27	113 / 114	DAQEHS010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00024782 SAMN37819583-rid19799473.denovo.57, whole genome shotgun sequence	1432..1544		enterobacteriales	IncFIA(HI1)	99.48	388 / 388	DAQEHS010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00024782 SAMN37819583-rid19799473.denovo.54, whole genome shotgun sequence	1021..1408		enterobacteriales	IncFIB(K)	99.64	560 / 560	DAQEHS010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00024782 SAMN37819583-rid19799473.denovo.42, whole genome shotgun sequence	7956..8515		enterobacteriales	IncR	100	251 / 251	DAQEHS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00024782 SAMN37819583-rid19799473.denovo.33, whole genome shotgun sequence	6088..6338																				avrA	DAQEHS010000015.1	97942..98811	99.425	870	0						
GCA_032691825.1_PDT001940252.1_genomic.fna	Salmonella_enterica	0.5218	204.377 KB	7	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_12	434	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_12	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQEHW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00030749 SAMN37819707-rid19801433.denovo.01, whole genome shotgun sequence	680849..681286	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQEHW010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00030749 SAMN37819707-rid19801433.guided.23, whole genome shotgun sequence	18772..19209	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEHW010000006.1	140168..141037	99.31	870	0						
GCA_032691845.1_PDT001940250.1_genomic.fna	Salmonella_enterica	0.5214	126.503 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	10	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEHX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.denovo.01, whole genome shotgun sequence	382203..382640	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	DAQEHX010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.denovo.40, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	DAQEHX010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.denovo.40, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	DAQEHX010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.denovo.76, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	DAQEHX010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.denovo.76, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	DAQEHX010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.denovo.91, whole genome shotgun sequence	93..908	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	X62115	aac(6')-Iaa	97.49	438/438	DAQEHX010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.guided.49, whole genome shotgun sequence	15479..15916	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	DAQEHX010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.guided.63, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	DAQEHX010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.guided.63, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	DAQEHX010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.guided.78, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	DAQEHX010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.guided.78, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	DAQEHX010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.guided.88, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	X62115	blaCTX-M-65	100	876/876	DAQEHX010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.denovo.80, whole genome shotgun sequence	658..1533	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	DAQEHX010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.guided.83, whole genome shotgun sequence	336..1211	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	DAQEHX010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.denovo.72, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	DAQEHX010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.guided.71, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	DAQEHX010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.denovo.40, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	DAQEHX010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.guided.63, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQEHX010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.denovo.40, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQEHX010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.guided.51, whole genome shotgun sequence	1866..3065	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQEHX010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.denovo.67, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	DAQEHX010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.guided.73, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	DAQEHX010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00021874 SAMN37819528-rid19803893.denovo.48, whole genome shotgun sequence	9109..9668																																																						avrA	DAQEHX010000002.1	124333..125202	99.655	870	0						
GCA_032691865.1_PDT001940254.1_genomic.fna	Salmonella_enterica	0.5212	174.186 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEHV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030545 SAMN37819705-rid19801443.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEHV010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030545 SAMN37819705-rid19801443.guided.30, whole genome shotgun sequence	14118..14555	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEHV010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030545 SAMN37819705-rid19801443.denovo.43, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEHV010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030545 SAMN37819705-rid19801443.denovo.25, whole genome shotgun sequence	40527..41169		enterobacteriales	IncFII(S)	100	262 / 262	DAQEHV010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030545 SAMN37819705-rid19801443.denovo.25, whole genome shotgun sequence	55552..55813																																									avrA	DAQEHV010000006.1	115439..116308	99.54	870	0						
GCA_032691885.1_PDT001940246.1_genomic.fna	Salmonella_enterica	0.5204	156.701 KB	12	aroC_123,dnaN_73,hemD_97,hisD_121,purE_6,sucA_120,thrA_72	601	-:k:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),IncFIA(HI1),IncFIB(K),IncR	aroC	100	100	aroC_123	dnaN	100	100	dnaN_73	hemD	100	100	hemD_97	hisD	100	100	hisD_121	purE	100	100	purE_6	sucA	100	100	sucA_120	thrA	100	100	thrA_72	-	k	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQEHY010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00031089 SAMN37819711-rid19794403.denovo.08, whole genome shotgun sequence	52481..52918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQEHY010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00031089 SAMN37819711-rid19794403.guided.18, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.02	129 / 131	DAQEHY010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00031089 SAMN37819711-rid19794403.denovo.64, whole genome shotgun sequence	1435..1563	enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQEHY010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00031089 SAMN37819711-rid19794403.denovo.65, whole genome shotgun sequence	547..675		enterobacteriales	IncFIA(HI1)	99.48	388 / 388	DAQEHY010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00031089 SAMN37819711-rid19794403.denovo.69, whole genome shotgun sequence	754..1141		enterobacteriales	IncFIB(K)	99.64	560 / 560	DAQEHY010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00031089 SAMN37819711-rid19794403.denovo.53, whole genome shotgun sequence	7138..7697		enterobacteriales	IncR	100	251 / 251	DAQEHY010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00031089 SAMN37819711-rid19794403.denovo.39, whole genome shotgun sequence	5700..5950																											avrA	DAQEHY010000005.1	107523..108392	99.425	870	0						
GCA_032691905.1_PDT001940242.1_genomic.fna	Salmonella_enterica	0.523	185.734 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEIA010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00031703 SAMN37819715-rid19801423.denovo.12, whole genome shotgun sequence	12523..12960	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEIA010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00031703 SAMN37819715-rid19801423.guided.26, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEIA010000005.1	94091..94960	99.77	870	0						
GCA_032691925.1_PDT001940244.1_genomic.fna	Salmonella_enterica	0.5211	97.981 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEHZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031485 SAMN37819713-rid19794393.denovo.01, whole genome shotgun sequence	171690..172127	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEHZ010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031485 SAMN37819713-rid19794393.guided.21, whole genome shotgun sequence	41400..41837	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.84	131 / 130	DAQEHZ010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031485 SAMN37819713-rid19794393.denovo.63, whole genome shotgun sequence	3857..3987	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEHZ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031485 SAMN37819713-rid19794393.denovo.31, whole genome shotgun sequence	40527..41169		enterobacteriales	IncFII(S)	100	262 / 262	DAQEHZ010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031485 SAMN37819713-rid19794393.denovo.59, whole genome shotgun sequence	3412..3673																																									avrA	DAQEHZ010000035.1	43555..44424	99.54	870	0						
GCA_032691945.1_PDT001940236.1_genomic.fna	Salmonella_enterica	0.5214	152.646 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_60,sucA_6,thrA_11	183	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_60	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEIB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00032538 SAMN37819720-rid19796713.denovo.01, whole genome shotgun sequence	150221..150658	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEIB010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00032538 SAMN37819720-rid19796713.guided.27, whole genome shotgun sequence	42515..42952	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQEIB010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00032538 SAMN37819720-rid19796713.denovo.26, whole genome shotgun sequence	8593..8852																																																						avrA	DAQEIB010000005.1	173360..174229	99.54	870	0						
GCA_032691965.1_PDT001940234.1_genomic.fna	Salmonella_enterica	0.5203	140.567 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEIC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00032665 SAMN37819722-rid19799463.denovo.01, whole genome shotgun sequence	242127..242564	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEIC010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00032665 SAMN37819722-rid19799463.guided.24, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEIC010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00032665 SAMN37819722-rid19799463.denovo.30, whole genome shotgun sequence	40534..41176	enterobacteriales	IncFII(S)	100	262 / 262	DAQEIC010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00032665 SAMN37819722-rid19799463.denovo.48, whole genome shotgun sequence	3425..3686		enterobacteriales	IncX1	95.76	377 / 377	DAQEIC010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00032665 SAMN37819722-rid19799463.denovo.33, whole genome shotgun sequence	34215..34591																																									avrA	DAQEIC010000005.1	140958..141827	99.54	870	0						
GCA_032691985.1_PDT001940224.1_genomic.fna	Salmonella_enterica	0.5203	177.82 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEID010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022248 SAMN37819539-rid19799443.denovo.01, whole genome shotgun sequence	151846..152283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEID010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022248 SAMN37819539-rid19799443.guided.32, whole genome shotgun sequence	26005..26442	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	DAQEID010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022248 SAMN37819539-rid19799443.denovo.29, whole genome shotgun sequence	5285..6145	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQEID010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022248 SAMN37819539-rid19799443.denovo.29, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQEID010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022248 SAMN37819539-rid19799443.denovo.29, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQEID010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022248 SAMN37819539-rid19799443.denovo.29, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQEID010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022248 SAMN37819539-rid19799443.denovo.29, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	DAQEID010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022248 SAMN37819539-rid19799443.guided.40, whole genome shotgun sequence	3945..4805	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQEID010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022248 SAMN37819539-rid19799443.guided.40, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQEID010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022248 SAMN37819539-rid19799443.guided.40, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQEID010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022248 SAMN37819539-rid19799443.guided.40, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQEID010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022248 SAMN37819539-rid19799443.guided.40, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEID010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022248 SAMN37819539-rid19799443.denovo.28, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	DAQEID010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022248 SAMN37819539-rid19799443.denovo.38, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	98.66	374 / 374	DAQEID010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022248 SAMN37819539-rid19799443.denovo.29, whole genome shotgun sequence	11911..12284																																									avrA	DAQEID010000006.1	115437..116306	99.54	870	0						
GCA_032692005.1_PDT001940226.1_genomic.fna	Salmonella_enterica	0.5213	149.463 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEIE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045203 SAMN37819816-rid19799453.denovo.01, whole genome shotgun sequence	207011..207448	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEIE010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045203 SAMN37819816-rid19799453.guided.27, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEIE010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045203 SAMN37819816-rid19799453.denovo.15, whole genome shotgun sequence	48432..49074	enterobacteriales	IncFII(S)	100	262 / 262	DAQEIE010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045203 SAMN37819816-rid19799453.denovo.15, whole genome shotgun sequence	64159..64420		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEIE010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045203 SAMN37819816-rid19799453.denovo.34, whole genome shotgun sequence	22489..22625																																									avrA	DAQEIE010000008.1	123544..124413	99.885	870	0						
GCA_032692025.1_PDT001940189.1_genomic.fna	Salmonella_enterica	0.5218	60.608 KB	26	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEIG010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046102 SAMN37819937-rid19794383.denovo.008, whole genome shotgun sequence	96906..97343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEIG010000138.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046102 SAMN37819937-rid19794383.guided.086, whole genome shotgun sequence	15636..16073	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEIG010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046102 SAMN37819937-rid19794383.denovo.011, whole genome shotgun sequence	43129..43771	enterobacteriales	IncFII(S)	100	262 / 262	DAQEIG010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046102 SAMN37819937-rid19794383.denovo.011, whole genome shotgun sequence	58856..59117																																																avrA	DAQEIG010000006.1	43848..44717	99.885	870	0						
GCA_032692045.1_PDT001940222.1_genomic.fna	Salmonella_enterica	0.5222	64.579 KB	26	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEIF010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045248 SAMN37819819-rid19801403.denovo.025, whole genome shotgun sequence	12505..12942	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEIF010000144.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045248 SAMN37819819-rid19801403.guided.035, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEIF010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045248 SAMN37819819-rid19801403.denovo.011, whole genome shotgun sequence	68520..69162	enterobacteriales	IncFII(S)	100	262 / 262	DAQEIF010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045248 SAMN37819819-rid19801403.denovo.011, whole genome shotgun sequence	84247..84508																																																avrA	DAQEIF010000012.1	84032..84901	99.885	870	0						
GCA_032692065.1_PDT001940185.1_genomic.fna	Salmonella_enterica	0.5222	65.217 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEII010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046211 SAMN37819940-rid19803873.denovo.027, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEII010000158.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046211 SAMN37819940-rid19803873.guided.040, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEII010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046211 SAMN37819940-rid19803873.denovo.010, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	DAQEII010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046211 SAMN37819940-rid19803873.denovo.010, whole genome shotgun sequence	64139..64400		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEII010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046211 SAMN37819940-rid19803873.denovo.048, whole genome shotgun sequence	22488..22624																																									avrA	DAQEII010000018.1	39625..40494	99.885	870	0						
GCA_032692085.1_PDT001940187.1_genomic.fna	Salmonella_enterica	0.5213	97.916 KB	15	aroC_454,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	1925	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrB_p.E466D	3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_454	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEIH010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046202 SAMN37819938-rid19801393.denovo.011, whole genome shotgun sequence	62380..62817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEIH010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046202 SAMN37819938-rid19801393.guided.021, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrB p.E466D	GAA -> GAT	E -> D	Nalidixic Acid, Ciprofloxacin	26933021																enterobacteriales	Col440I	94.74	114 / 114	DAQEIH010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046202 SAMN37819938-rid19801393.denovo.086, whole genome shotgun sequence	1981..2094	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEIH010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046202 SAMN37819938-rid19801393.denovo.033, whole genome shotgun sequence	40535..41177		enterobacteriales	IncFII(S)	100	262 / 262	DAQEIH010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046202 SAMN37819938-rid19801393.denovo.073, whole genome shotgun sequence	3419..3680																																									avrA	DAQEIH010000004.1	115382..116251	99.54	870	0						
GCA_032692105.1_PDT001940179.1_genomic.fna	Salmonella_enterica	0.5221	79.921 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEIK010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046292 SAMN37819946-rid19794373.denovo.002, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEIK010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046292 SAMN37819946-rid19794373.guided.065, whole genome shotgun sequence	10129..10566	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEIK010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046292 SAMN37819946-rid19794373.denovo.014, whole genome shotgun sequence	14689..15331	enterobacteriales	IncFII(S)	100	262 / 262	DAQEIK010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046292 SAMN37819946-rid19794373.denovo.014, whole genome shotgun sequence	30416..30677																																																avrA	DAQEIK010000009.1	107932..108801	99.885	870	0						
GCA_032692125.1_PDT001940183.1_genomic.fna	Salmonella_enterica	0.5223	64.064 KB	21	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEIJ010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046215 SAMN37819942-rid19803863.denovo.065, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEIJ010000120.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046215 SAMN37819942-rid19803863.guided.077, whole genome shotgun sequence	7310..7747	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQEIJ010000035.1	43808..44677	99.885	870	0						
GCA_032692145.1_PDT001940175.1_genomic.fna	Salmonella_enterica	0.521	177.54 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEIM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046386 SAMN37819949-rid19803853.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEIM010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046386 SAMN37819949-rid19803853.guided.22, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEIM010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046386 SAMN37819949-rid19803853.denovo.46, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEIM010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046386 SAMN37819949-rid19803853.denovo.30, whole genome shotgun sequence	40532..41174		enterobacteriales	IncFII(S)	100	262 / 262	DAQEIM010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046386 SAMN37819949-rid19803853.denovo.30, whole genome shotgun sequence	55557..55818																																									avrA	DAQEIM010000004.1	140746..141615	99.54	870	0						
GCA_032692165.1_PDT001940177.1_genomic.fna	Salmonella_enterica	0.5217	185.909 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEIL010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00022643 SAMN37819552-rid19801383.denovo.04, whole genome shotgun sequence	302683..303120	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEIL010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00022643 SAMN37819552-rid19801383.guided.19, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEIL010000007.1	149554..150423	99.655	870	0						
GCA_032692185.1_PDT001940169.1_genomic.fna	Salmonella_enterica	0.5211	149.384 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_1113,thrA_2	7910	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_1113	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEIN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046439 SAMN37819955-rid19794363.denovo.01, whole genome shotgun sequence	145233..145670	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEIN010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046439 SAMN37819955-rid19794363.guided.11, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEIN010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046439 SAMN37819955-rid19794363.denovo.17, whole genome shotgun sequence	48418..49060	enterobacteriales	IncFII(S)	100	262 / 262	DAQEIN010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046439 SAMN37819955-rid19794363.denovo.17, whole genome shotgun sequence	64145..64406																																																avrA	DAQEIN010000011.1	39625..40494	99.885	870	0						
GCA_032692205.1_PDT001940159.1_genomic.fna	Salmonella_enterica	0.5219	129.305 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEIP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048072 SAMN37820050-rid19799433.denovo.01, whole genome shotgun sequence	83581..84018	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEIP010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048072 SAMN37820050-rid19799433.guided.54, whole genome shotgun sequence	7491..7928	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEIP010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048072 SAMN37820050-rid19799433.denovo.14, whole genome shotgun sequence	48410..49052	enterobacteriales	IncFII(S)	100	262 / 262	DAQEIP010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048072 SAMN37820050-rid19799433.denovo.14, whole genome shotgun sequence	64137..64398																																																avrA	DAQEIP010000005.1	123454..124323	99.885	870	0						
GCA_032692225.1_PDT001940167.1_genomic.fna	Salmonella_enterica	0.5219	129.444 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEIO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048015 SAMN37820043-rid19801373.denovo.01, whole genome shotgun sequence	206854..207291	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEIO010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048015 SAMN37820043-rid19801373.guided.34, whole genome shotgun sequence	34213..34650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEIO010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048015 SAMN37820043-rid19801373.denovo.17, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQEIO010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048015 SAMN37820043-rid19801373.denovo.17, whole genome shotgun sequence	60371..60632																																																avrA	DAQEIO010000023.1	39625..40494	99.885	870	0						
GCA_032692245.1_PDT001940157.1_genomic.fna	Salmonella_enterica	0.5219	48.662 KB	31	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEIQ010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048101 SAMN37820052-rid19801363.denovo.087, whole genome shotgun sequence	11318..11755	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEIQ010000193.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048101 SAMN37820052-rid19801363.guided.154, whole genome shotgun sequence	833..1270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEIQ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048101 SAMN37820052-rid19801363.denovo.006, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	DAQEIQ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048101 SAMN37820052-rid19801363.denovo.006, whole genome shotgun sequence	30407..30668																																																avrA	DAQEIQ010000034.1	43800..44669	99.885	870	0						
GCA_032692265.1_PDT001940155.1_genomic.fna	Salmonella_enterica	0.5208	269.371 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEIR010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00048138 SAMN37820054-rid19801353.denovo.03, whole genome shotgun sequence	106377..106814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEIR010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00048138 SAMN37820054-rid19801353.guided.28, whole genome shotgun sequence	18858..19295	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	DAQEIR010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00048138 SAMN37820054-rid19801353.denovo.36, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQEIR010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00048138 SAMN37820054-rid19801353.guided.37, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEIR010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00048138 SAMN37820054-rid19801353.denovo.21, whole genome shotgun sequence	40526..41168	enterobacteriales	IncFII(S)	100	262 / 262	DAQEIR010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00048138 SAMN37820054-rid19801353.denovo.31, whole genome shotgun sequence	3414..3675		enterobacteriales	IncX1	95.76	377 / 377	DAQEIR010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00048138 SAMN37820054-rid19801353.denovo.23, whole genome shotgun sequence	4749..5125																																									avrA	DAQEIR010000001.1	552950..553819	99.54	870	0						
GCA_032692285.1_PDT001940139.1_genomic.fna	Salmonella_enterica	0.5214	104.18 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEIU010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048519 SAMN37820068-rid19799413.denovo.11, whole genome shotgun sequence	52515..52952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEIU010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048519 SAMN37820068-rid19799413.guided.30, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEIU010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048519 SAMN37820068-rid19799413.denovo.15, whole genome shotgun sequence	44647..45289	enterobacteriales	IncFII(S)	100	262 / 262	DAQEIU010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048519 SAMN37820068-rid19799413.denovo.15, whole genome shotgun sequence	60374..60635																																																avrA	DAQEIU010000012.1	108274..109143	99.885	870	0						
GCA_032692305.1_PDT001940127.1_genomic.fna	Salmonella_enterica	0.5228	135.109 KB	13	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQEIV010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00025203 SAMN37819592-rid19801323.denovo.07, whole genome shotgun sequence	15501..15938	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQEIV010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00025203 SAMN37819592-rid19801323.guided.37, whole genome shotgun sequence	15453..15890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEIV010000014.1	60953..61822	98.966	870	0						
GCA_032692325.1_PDT001940147.1_genomic.fna	Salmonella_enterica	0.5217	121.318 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	5	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaTEM-1B,blaCMY-2,blaTEM-1B,tet(A),tet(A),dfrA5,dfrA5	0		4	IncFIB(S),IncFIB(pB171),IncFII(S),IncFII(pHN7A8)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEIT010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048401 SAMN37820061-rid19801343.denovo.004, whole genome shotgun sequence	206856..207293	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEIT010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048401 SAMN37820061-rid19801343.guided.058, whole genome shotgun sequence	14708..15145	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	DAQEIT010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048401 SAMN37820061-rid19801343.denovo.063, whole genome shotgun sequence	5292..6437	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-1B	100	861/861	DAQEIT010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048401 SAMN37820061-rid19801343.denovo.086, whole genome shotgun sequence	218..1078	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	DAQEIT010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048401 SAMN37820061-rid19801343.guided.066, whole genome shotgun sequence	2377..3522	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-1B	100	861/861	DAQEIT010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048401 SAMN37820061-rid19801343.guided.085, whole genome shotgun sequence	558..1418	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	DAQEIT010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048401 SAMN37820061-rid19801343.denovo.080, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQEIT010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048401 SAMN37820061-rid19801343.guided.079, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790	dfrA5	100	474/474	DAQEIT010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048401 SAMN37820061-rid19801343.denovo.077, whole genome shotgun sequence	99..572	Trimethoprim	X12868	dfrA5	100	474/474	DAQEIT010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048401 SAMN37820061-rid19801343.guided.076, whole genome shotgun sequence	3716..4189	Trimethoprim	X12868																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	IncFIB(S)	100	643 / 643	DAQEIT010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048401 SAMN37820061-rid19801343.denovo.018, whole genome shotgun sequence	48417..49059	enterobacteriales	IncFIB(pB171)	98.44	643 / 643	DAQEIT010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048401 SAMN37820061-rid19801343.denovo.059, whole genome shotgun sequence	2227..2863		enterobacteriales	IncFII(S)	100	262 / 262	DAQEIT010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048401 SAMN37820061-rid19801343.denovo.018, whole genome shotgun sequence	64144..64405		enterobacteriales	IncFII(pHN7A8)	97.69	260 / 260	DAQEIT010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048401 SAMN37820061-rid19801343.denovo.063, whole genome shotgun sequence	11979..12238																																		avrA	DAQEIT010000005.1	123444..124313	99.885	870	0						
GCA_032692345.1_PDT001940114.1_genomic.fna	Salmonella_enterica	0.521	166.832 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEIW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025715 SAMN37819604-rid19794353.denovo.01, whole genome shotgun sequence	16082..16519	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEIW010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025715 SAMN37819604-rid19794353.guided.27, whole genome shotgun sequence	9823..10260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEIW010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025715 SAMN37819604-rid19794353.denovo.52, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEIW010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025715 SAMN37819604-rid19794353.denovo.26, whole genome shotgun sequence	40532..41174		enterobacteriales	IncFII(S)	100	262 / 262	DAQEIW010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025715 SAMN37819604-rid19794353.denovo.26, whole genome shotgun sequence	55557..55818																																									avrA	DAQEIW010000007.1	115320..116189	99.54	870	0						
GCA_032692365.1_PDT001940149.1_genomic.fna	Salmonella_enterica	0.5217	137.636 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEIS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048216 SAMN37820059-rid19799423.denovo.01, whole genome shotgun sequence	379625..380062	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEIS010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048216 SAMN37820059-rid19799423.guided.31, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEIS010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048216 SAMN37820059-rid19799423.denovo.15, whole genome shotgun sequence	48415..49057	enterobacteriales	IncFII(S)	100	262 / 262	DAQEIS010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048216 SAMN37820059-rid19799423.denovo.15, whole genome shotgun sequence	64142..64403																																																avrA	DAQEIS010000005.1	108280..109149	99.885	870	0						
GCA_032692385.1_PDT001940112.1_genomic.fna	Salmonella_enterica	0.5212	136.514 KB	13	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEIY010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025852 SAMN37819606-rid19793203.denovo.03, whole genome shotgun sequence	52403..52840	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEIY010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025852 SAMN37819606-rid19793203.guided.37, whole genome shotgun sequence	15531..15968	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEIY010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025852 SAMN37819606-rid19793203.denovo.60, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEIY010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025852 SAMN37819606-rid19793203.denovo.33, whole genome shotgun sequence	40532..41174		enterobacteriales	IncFII(S)	100	262 / 262	DAQEIY010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025852 SAMN37819606-rid19793203.denovo.33, whole genome shotgun sequence	55557..55818																																									avrA	DAQEIY010000004.1	115402..116271	99.54	870	0						
GCA_032692405.1_PDT001940110.1_genomic.fna	Salmonella_enterica	0.5213	125.174 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEIX010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021259 SAMN37819508-rid19801313.denovo.18, whole genome shotgun sequence	52309..52746	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEIX010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021259 SAMN37819508-rid19801313.guided.43, whole genome shotgun sequence	10217..10654	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEIX010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021259 SAMN37819508-rid19801313.denovo.35, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQEIX010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021259 SAMN37819508-rid19801313.denovo.45, whole genome shotgun sequence	3414..3675																																																avrA	DAQEIX010000001.1	406355..407224	99.54	870	0						
GCA_032692425.1_PDT001940104.1_genomic.fna	Salmonella_enterica	0.5219	376.882 KB	5	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQEIZ010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00025961 SAMN37819611-rid19793193.denovo.07, whole genome shotgun sequence	38043..38480	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQEIZ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00025961 SAMN37819611-rid19793193.guided.16, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEIZ010000005.1	150846..151715	98.966	870	0						
GCA_032692445.1_PDT001940102.1_genomic.fna	Salmonella_enterica	0.5223	136.586 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEJA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00026131 SAMN37819613-rid19794343.denovo.01, whole genome shotgun sequence	360107..360544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEJA010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00026131 SAMN37819613-rid19794343.guided.35, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEJA010000003.1	124385..125254	99.77	870	0						
GCA_032692465.1_PDT001940100.1_genomic.fna	Salmonella_enterica	0.5219	199.285 KB	9	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	ColRNAI,IncI1-I(Alpha)	aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQEJB010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00026457 SAMN37819615-rid19801303.denovo.10, whole genome shotgun sequence	38065..38502	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQEJB010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00026457 SAMN37819615-rid19801303.guided.38, whole genome shotgun sequence	7377..7814	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	DAQEJB010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00026457 SAMN37819615-rid19801303.denovo.45, whole genome shotgun sequence	3981..4111	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQEJB010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00026457 SAMN37819615-rid19801303.denovo.28, whole genome shotgun sequence	25853..25994																																																avrA	DAQEJB010000009.1	125215..126084	98.966	870	0						
GCA_032692485.1_PDT001940098.1_genomic.fna	Salmonella_enterica	0.523	115.391 KB	14	aroC_41,dnaN_494,hemD_3,hisD_7,purE_5,sucA_6,thrA_10	3304	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_494	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_6	thrA	100	100	thrA_10	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEJC010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00026477 SAMN37819617-rid19803823.denovo.04, whole genome shotgun sequence	150097..150534	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEJC010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00026477 SAMN37819617-rid19803823.guided.31, whole genome shotgun sequence	44258..44695	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQEJC010000005.1	95264..96133	99.425	870	0						
GCA_032692505.1_PDT001940092.1_genomic.fna	Salmonella_enterica	0.5219	99.841 KB	17	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEJD010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027126 SAMN37819622-rid19794333.denovo.005, whole genome shotgun sequence	13082..13519	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEJD010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027126 SAMN37819622-rid19794333.guided.014, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEJD010000001.1	124024..124893	99.655	870	0						
GCA_032692525.1_PDT001940090.1_genomic.fna	Salmonella_enterica	0.5211	216.073 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEJE010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027301 SAMN37819624-rid19801293.denovo.16, whole genome shotgun sequence	44035..44472	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQEJE010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027301 SAMN37819624-rid19801293.denovo.37, whole genome shotgun sequence	595..1425	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQEJE010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027301 SAMN37819624-rid19801293.denovo.37, whole genome shotgun sequence	1431..2234	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	DAQEJE010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027301 SAMN37819624-rid19801293.guided.30, whole genome shotgun sequence	24928..25365	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQEJE010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027301 SAMN37819624-rid19801293.guided.48, whole genome shotgun sequence	3371..4201	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQEJE010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027301 SAMN37819624-rid19801293.guided.48, whole genome shotgun sequence	2562..3365	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQEJE010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027301 SAMN37819624-rid19801293.denovo.46, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQEJE010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027301 SAMN37819624-rid19801293.guided.45, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	DAQEJE010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027301 SAMN37819624-rid19801293.denovo.37, whole genome shotgun sequence	2295..3110	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQEJE010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027301 SAMN37819624-rid19801293.guided.48, whole genome shotgun sequence	1686..2501	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEJE010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027301 SAMN37819624-rid19801293.denovo.29, whole genome shotgun sequence	32997..33639	enterobacteriales	IncFII(S)	100	262 / 262	DAQEJE010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027301 SAMN37819624-rid19801293.denovo.41, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	95.76	377 / 377	DAQEJE010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027301 SAMN37819624-rid19801293.denovo.37, whole genome shotgun sequence	13399..13775																																									avrA	DAQEJE010000001.1	547171..548040	99.54	870	0						
GCA_032692545.1_PDT001940220.1_genomic.fna	Salmonella_enterica	0.5223	58.483 KB	29	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEJG010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045320 SAMN37819822-rid19805193.denovo.023, whole genome shotgun sequence	12513..12950	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEJG010000155.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045320 SAMN37819822-rid19805193.guided.095, whole genome shotgun sequence	15420..15857	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEJG010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045320 SAMN37819822-rid19805193.denovo.036, whole genome shotgun sequence	48407..49049	enterobacteriales	IncFII(S)	100	262 / 262	DAQEJG010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045320 SAMN37819822-rid19805193.denovo.041, whole genome shotgun sequence	29402..29663		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEJG010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045320 SAMN37819822-rid19805193.denovo.048, whole genome shotgun sequence	22488..22624																																									avrA	DAQEJG010000011.1	81735..82604	99.885	870	0						
GCA_032692565.1_PDT001940088.1_genomic.fna	Salmonella_enterica	0.5213	188.056 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEJF010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027445 SAMN37819626-rid19803813.denovo.04, whole genome shotgun sequence	48294..48731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEJF010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027445 SAMN37819626-rid19803813.guided.23, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEJF010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027445 SAMN37819626-rid19803813.denovo.60, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEJF010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027445 SAMN37819626-rid19803813.denovo.26, whole genome shotgun sequence	40535..41177		enterobacteriales	IncFII(S)	100	262 / 262	DAQEJF010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027445 SAMN37819626-rid19803813.denovo.26, whole genome shotgun sequence	55560..55821																																									avrA	DAQEJF010000007.1	115437..116306	99.54	870	0						
GCA_032692585.1_PDT001940080.1_genomic.fna	Salmonella_enterica	0.5206	90.222 KB	17	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEJI010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027758 SAMN37819633-rid19801283.denovo.016, whole genome shotgun sequence	52286..52723	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEJI010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027758 SAMN37819633-rid19801283.guided.026, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEJI010000010.1	39538..40407	99.77	870	0						
GCA_032692605.1_PDT001940082.1_genomic.fna	Salmonella_enterica	0.5207	119.931 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEJH010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027635 SAMN37819631-rid19794323.denovo.08, whole genome shotgun sequence	12524..12961	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEJH010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027635 SAMN37819631-rid19794323.guided.32, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEJH010000012.1	39538..40407	99.77	870	0						
GCA_032692625.1_PDT001940072.1_genomic.fna	Salmonella_enterica	0.5203	151.204 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEJJ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00034558 SAMN37819727-rid19799403.denovo.02, whole genome shotgun sequence	154340..154777	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEJJ010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00034558 SAMN37819727-rid19799403.guided.36, whole genome shotgun sequence	20935..21372	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEJJ010000004.1	124109..124978	99.77	870	0						
GCA_032692645.1_PDT001940070.1_genomic.fna	Salmonella_enterica	0.5208	132.506 KB	14	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_7,thrA_12	473	8:z10:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440II,IncFII	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQEJK010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00035272 SAMN37819728-rid19801273.denovo.03, whole genome shotgun sequence	246393..246830	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQEJK010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00035272 SAMN37819728-rid19801273.guided.46, whole genome shotgun sequence	15226..15663	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQEJK010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00035272 SAMN37819728-rid19801273.denovo.62, whole genome shotgun sequence	1461..1591	enterobacteriales	Col440II	97.16	282 / 282	DAQEJK010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00035272 SAMN37819728-rid19801273.denovo.57, whole genome shotgun sequence	5136..5417		enterobacteriales	IncFII	96.55	261 / 261	DAQEJK010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00035272 SAMN37819728-rid19801273.denovo.30, whole genome shotgun sequence	57182..57441																																									avrA	DAQEJK010000018.1	39545..40414	99.655	870	0						
GCA_032692665.1_PDT001940062.1_genomic.fna	Salmonella_enterica	0.5222	141.013 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEJL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00036429 SAMN37819736-rid19799393.denovo.01, whole genome shotgun sequence	477839..478276	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEJL010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00036429 SAMN37819736-rid19799393.guided.48, whole genome shotgun sequence	17405..17842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEJL010000013.1	123977..124846	99.77	870	0						
GCA_032692685.1_PDT001940052.1_genomic.fna	Salmonella_enterica	0.5212	326.4 KB	6	aroC_139,dnaN_174,hemD_68,hisD_132,purE_133,sucA_9,thrA_168	578	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_139	dnaN	100	100	dnaN_174	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_133	sucA	100	100	sucA_9	thrA	100	100	thrA_168	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQEJM010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00037810 SAMN37819745-rid19799383.denovo.03, whole genome shotgun sequence	146090..146527	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQEJM010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00037810 SAMN37819745-rid19799383.guided.21, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEJM010000001.1	574149..575018	99.195	870	0						
GCA_032692705.1_PDT001940041.1_genomic.fna	Salmonella_enterica	0.5211	222.468 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEJO010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045430 SAMN37819841-rid19802483.denovo.02, whole genome shotgun sequence	55685..56122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEJO010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045430 SAMN37819841-rid19802483.guided.35, whole genome shotgun sequence	10437..10874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEJO010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045430 SAMN37819841-rid19802483.denovo.17, whole genome shotgun sequence	48409..49051	enterobacteriales	IncFII(S)	100	262 / 262	DAQEJO010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045430 SAMN37819841-rid19802483.denovo.17, whole genome shotgun sequence	64136..64397		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEJO010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045430 SAMN37819841-rid19802483.denovo.31, whole genome shotgun sequence	22488..22624																																									avrA	DAQEJO010000006.1	98459..99328	99.885	870	0						
GCA_032692725.1_PDT001940037.1_genomic.fna	Salmonella_enterica	0.5227	113.937 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEJN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00045486 SAMN37819845-rid19792373.denovo.01, whole genome shotgun sequence	378187..378624	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEJN010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00045486 SAMN37819845-rid19792373.guided.13, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEJN010000009.1	39538..40407	99.77	870	0						
GCA_032692745.1_PDT001940035.1_genomic.fna	Salmonella_enterica	0.5213	81.723 KB	21	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEJP010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045533 SAMN37819847-rid19801263.denovo.008, whole genome shotgun sequence	20894..21331	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEJP010000128.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045533 SAMN37819847-rid19801263.guided.013, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEJP010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045533 SAMN37819847-rid19801263.denovo.014, whole genome shotgun sequence	48418..49060	enterobacteriales	IncFII(S)	100	262 / 262	DAQEJP010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045533 SAMN37819847-rid19801263.denovo.014, whole genome shotgun sequence	64145..64406		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEJP010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045533 SAMN37819847-rid19801263.denovo.041, whole genome shotgun sequence	22488..22624																																									avrA	DAQEJP010000037.1	39625..40494	99.885	870	0						
GCA_032692765.1_PDT001940031.1_genomic.fna	Salmonella_enterica	0.5217	64.382 KB	28	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEJR010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045550 SAMN37819850-rid19802473.denovo.026, whole genome shotgun sequence	12541..12978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEJR010000153.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045550 SAMN37819850-rid19802473.guided.033, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEJR010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045550 SAMN37819850-rid19802473.denovo.044, whole genome shotgun sequence	43702..44344	enterobacteriales	IncFII(S)	100	262 / 262	DAQEJR010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045550 SAMN37819850-rid19802473.denovo.048, whole genome shotgun sequence	29394..29655		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEJR010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045550 SAMN37819850-rid19802473.denovo.074, whole genome shotgun sequence	6356..6492																																									avrA	DAQEJR010000019.1	39625..40494	99.885	870	0						
GCA_032692785.1_PDT001940027.1_genomic.fna	Salmonella_enterica	0.5213	92.8 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEJQ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045567 SAMN37819854-rid19793183.denovo.017, whole genome shotgun sequence	38026..38463	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEJQ010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045567 SAMN37819854-rid19793183.guided.055, whole genome shotgun sequence	15577..16014	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEJQ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045567 SAMN37819854-rid19793183.denovo.082, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEJQ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045567 SAMN37819854-rid19793183.denovo.014, whole genome shotgun sequence	48424..49066		enterobacteriales	IncFII(S)	100	262 / 262	DAQEJQ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045567 SAMN37819854-rid19793183.denovo.014, whole genome shotgun sequence	64151..64412																																									avrA	DAQEJQ010000005.1	108140..109009	99.885	870	0						
GCA_032692805.1_PDT001940023.1_genomic.fna	Salmonella_enterica	0.5208	224.781 KB	7	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQEJT010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Indiana isolate AUSMDU00022276 SAMN37819543-rid19801243.denovo.02, whole genome shotgun sequence	386385..386822	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQEJT010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Indiana isolate AUSMDU00022276 SAMN37819543-rid19801243.guided.18, whole genome shotgun sequence	40179..40616	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032692825.1_PDT001940025.1_genomic.fna	Salmonella_enterica	0.5214	53.701 KB	30	aroC_10,dnaN_7,hemD_12,hisD_9,purE_345*,sucA_9,thrA_2	Unknown	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI(Gamma),IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	99.749373433584	100	purE_345*	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEJS010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045570 SAMN37819856-rid19799373.denovo.020, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEJS010000166.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045570 SAMN37819856-rid19799373.guided.029, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEJS010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045570 SAMN37819856-rid19799373.denovo.008, whole genome shotgun sequence	48409..49051	enterobacteriales	IncFII(S)	100	262 / 262	DAQEJS010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045570 SAMN37819856-rid19799373.denovo.008, whole genome shotgun sequence	64136..64397		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEJS010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045570 SAMN37819856-rid19799373.denovo.047, whole genome shotgun sequence	22488..22624		enterobacteriales	IncX4	99.86	712 / 712	DAQEJS010000135.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045570 SAMN37819856-rid19799373.denovo.138, whole genome shotgun sequence	419..1130																																		avrA	DAQEJS010000042.1	39625..40494	99.885	870	0						
GCA_032692845.1_PDT001940017.1_genomic.fna	Salmonella_enterica	0.5225	53.644 KB	28	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEJU010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045602 SAMN37819863-rid19794313.denovo.017, whole genome shotgun sequence	15508..15945	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEJU010000171.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045602 SAMN37819863-rid19794313.guided.036, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQEJU010000126.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045602 SAMN37819863-rid19794313.denovo.129, whole genome shotgun sequence	3710..3840	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEJU010000105.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045602 SAMN37819863-rid19794313.denovo.108, whole genome shotgun sequence	9262..9904		enterobacteriales	IncFII(S)	100	262 / 262	DAQEJU010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045602 SAMN37819863-rid19794313.denovo.042, whole genome shotgun sequence	29398..29659																																									avrA	DAQEJU010000020.1	61077..61946	99.885	870	0						
GCA_032692865.1_PDT001940015.1_genomic.fna	Salmonella_enterica	0.5228	46.926 KB	35	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEJV010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045613 SAMN37819865-rid19801233.denovo.018, whole genome shotgun sequence	12553..12990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEJV010000182.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045613 SAMN37819865-rid19801233.guided.048, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEJV010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045613 SAMN37819865-rid19801233.denovo.026, whole genome shotgun sequence	44749..45391	enterobacteriales	IncFII(S)	100	262 / 262	DAQEJV010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045613 SAMN37819865-rid19801233.denovo.026, whole genome shotgun sequence	29403..29664																																																avrA	DAQEJV010000034.1	43804..44673	99.885	870	0						
GCA_032692885.1_PDT001940003.1_genomic.fna	Salmonella_enterica	0.5217	93.838 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEJY010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046487 SAMN37819962-rid19801203.denovo.34, whole genome shotgun sequence	14125..14562	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEJY010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046487 SAMN37819962-rid19801203.guided.69, whole genome shotgun sequence	1998..2435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEJY010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046487 SAMN37819962-rid19801203.denovo.16, whole genome shotgun sequence	48449..49091	enterobacteriales	IncFII(S)	100	262 / 262	DAQEJY010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046487 SAMN37819962-rid19801203.denovo.16, whole genome shotgun sequence	64176..64437																																																avrA	DAQEJY010000002.1	108308..109177	99.885	870	0						
GCA_032692905.1_PDT001940011.1_genomic.fna	Salmonella_enterica	0.521	134.832 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEJW010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045699 SAMN37819868-rid19803803.denovo.14, whole genome shotgun sequence	25625..26062	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEJW010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045699 SAMN37819868-rid19803803.guided.30, whole genome shotgun sequence	24989..25426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColRNAI	90.08	131 / 130	DAQEJW010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045699 SAMN37819868-rid19803803.denovo.68, whole genome shotgun sequence	1303..1433	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEJW010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045699 SAMN37819868-rid19803803.denovo.36, whole genome shotgun sequence	35193..35835		enterobacteriales	IncFII(S)	100	262 / 262	DAQEJW010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045699 SAMN37819868-rid19803803.denovo.59, whole genome shotgun sequence	3424..3685																																									avrA	DAQEJW010000004.1	140958..141827	99.54	870	0						
GCA_032692925.1_PDT001940007.1_genomic.fna	Salmonella_enterica	0.5214	82.723 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEJX010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046445 SAMN37819958-rid19794303.denovo.002, whole genome shotgun sequence	134049..134486	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEJX010000112.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046445 SAMN37819958-rid19794303.guided.036, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEJX010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046445 SAMN37819958-rid19794303.denovo.015, whole genome shotgun sequence	48413..49055	enterobacteriales	IncFII(S)	100	262 / 262	DAQEJX010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046445 SAMN37819958-rid19794303.denovo.015, whole genome shotgun sequence	64140..64401		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEJX010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046445 SAMN37819958-rid19794303.denovo.017, whole genome shotgun sequence	15833..15969																																									avrA	DAQEJX010000011.1	39625..40494	99.885	870	0						
GCA_032692965.1_PDT001939995.1_genomic.fna	Salmonella_enterica	0.5221	64.642 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKB010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046519 SAMN37819969-rid19799353.denovo.019, whole genome shotgun sequence	17439..17876	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKB010000153.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046519 SAMN37819969-rid19799353.guided.030, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKB010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046519 SAMN37819969-rid19799353.denovo.010, whole genome shotgun sequence	48408..49050	enterobacteriales	IncFII(S)	100	262 / 262	DAQEKB010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046519 SAMN37819969-rid19799353.denovo.010, whole genome shotgun sequence	64135..64396		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEKB010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046519 SAMN37819969-rid19799353.denovo.046, whole genome shotgun sequence	22488..22624																																									avrA	DAQEKB010000040.1	39625..40494	99.885	870	0						
GCA_032692985.1_PDT001940005.1_genomic.fna	Salmonella_enterica	0.5226	58.661 KB	26	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEJZ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046468 SAMN37819960-rid19801213.denovo.022, whole genome shotgun sequence	12383..12820	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEJZ010000158.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046468 SAMN37819960-rid19801213.guided.038, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEJZ010000120.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046468 SAMN37819960-rid19801213.denovo.123, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEJZ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046468 SAMN37819960-rid19801213.denovo.009, whole genome shotgun sequence	48421..49063		enterobacteriales	IncFII(S)	100	262 / 262	DAQEJZ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046468 SAMN37819960-rid19801213.denovo.009, whole genome shotgun sequence	64148..64409																																									avrA	DAQEJZ010000004.1	100990..101859	99.885	870	0						
GCA_032693005.1_PDT001939993.1_genomic.fna	Salmonella_enterica	0.523	41.866 KB	42	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKC010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046612 SAMN37819971-rid19801193.denovo.011, whole genome shotgun sequence	11343..11780	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKC010000229.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046612 SAMN37819971-rid19801193.guided.034, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKC010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046612 SAMN37819971-rid19801193.denovo.028, whole genome shotgun sequence	44440..45082	enterobacteriales	IncFII(S)	100	262 / 262	DAQEKC010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046612 SAMN37819971-rid19801193.denovo.038, whole genome shotgun sequence	29394..29655		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEKC010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046612 SAMN37819971-rid19801193.denovo.023, whole genome shotgun sequence	15829..15965																																									avrA	DAQEKC010000035.1	39625..40494	99.885	870	0						
GCA_032693025.1_PDT001939997.1_genomic.fna	Salmonella_enterica	0.5217	148.732 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEKA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00022709 SAMN37819554-rid19799363.denovo.01, whole genome shotgun sequence	382128..382565	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEKA010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00022709 SAMN37819554-rid19799363.guided.30, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQEKA010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00022709 SAMN37819554-rid19799363.denovo.37, whole genome shotgun sequence	18528..18669																																																						avrA	DAQEKA010000005.1	149551..150420	99.655	870	0						
GCA_032693045.1_PDT001939987.1_genomic.fna	Salmonella_enterica	0.5214	150.333 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046714 SAMN37819977-rid19799343.denovo.01, whole genome shotgun sequence	207028..207465	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKE010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046714 SAMN37819977-rid19799343.guided.17, whole genome shotgun sequence	31123..31560	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKE010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046714 SAMN37819977-rid19799343.denovo.19, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQEKE010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046714 SAMN37819977-rid19799343.denovo.19, whole genome shotgun sequence	60371..60632																																																avrA	DAQEKE010000015.1	39625..40494	99.885	870	0						
GCA_032693065.1_PDT001939985.1_genomic.fna	Salmonella_enterica	0.5217	129.424 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046718 SAMN37819978-rid19799333.denovo.01, whole genome shotgun sequence	207036..207473	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKD010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046718 SAMN37819978-rid19799333.guided.18, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKD010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046718 SAMN37819978-rid19799333.denovo.15, whole genome shotgun sequence	44669..45311	enterobacteriales	IncFII(S)	100	262 / 262	DAQEKD010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046718 SAMN37819978-rid19799333.denovo.15, whole genome shotgun sequence	60396..60657																																																avrA	DAQEKD010000004.1	107926..108795	99.885	870	0						
GCA_032693085.1_PDT001939958.1_genomic.fna	Salmonella_enterica	0.5219	192.169 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048947 SAMN37820089-rid19801183.denovo.01, whole genome shotgun sequence	145340..145777	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKF010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048947 SAMN37820089-rid19801183.guided.31, whole genome shotgun sequence	24984..25421	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKF010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048947 SAMN37820089-rid19801183.denovo.17, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQEKF010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048947 SAMN37820089-rid19801183.denovo.17, whole genome shotgun sequence	60371..60632																																																avrA	DAQEKF010000004.1	185354..186223	99.885	870	0						
GCA_032693105.1_PDT001939926.1_genomic.fna	Salmonella_enterica	0.5215	117.96 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEKH010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028396 SAMN37819657-rid19805133.denovo.06, whole genome shotgun sequence	16055..16492	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEKH010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028396 SAMN37819657-rid19805133.guided.53, whole genome shotgun sequence	7490..7927	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEKH010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028396 SAMN37819657-rid19805133.denovo.76, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEKH010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028396 SAMN37819657-rid19805133.denovo.30, whole genome shotgun sequence	35825..36467		enterobacteriales	IncFII(S)	100	262 / 262	DAQEKH010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028396 SAMN37819657-rid19805133.denovo.30, whole genome shotgun sequence	50850..51111																																									avrA	DAQEKH010000013.1	43658..44527	99.54	870	0						
GCA_032693125.1_PDT001939918.1_genomic.fna	Salmonella_enterica	0.5215	91.979 KB	18	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEKG010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028430 SAMN37819664-rid19801143.denovo.006, whole genome shotgun sequence	52315..52752	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEKG010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028430 SAMN37819664-rid19801143.guided.034, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEKG010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028430 SAMN37819664-rid19801143.denovo.078, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEKG010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028430 SAMN37819664-rid19801143.denovo.035, whole genome shotgun sequence	40527..41169		enterobacteriales	IncFII(S)	100	262 / 262	DAQEKG010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028430 SAMN37819664-rid19801143.denovo.035, whole genome shotgun sequence	55552..55813																																									avrA	DAQEKG010000003.1	115324..116193	99.54	870	0						
GCA_032693145.1_PDT001939873.1_genomic.fna	Salmonella_enterica	0.5228	171.935 KB	10	aroC_41,dnaN_2,hemD_3,hisD_7,purE_5,sucA_6,thrA_10	180	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_6	thrA	100	100	thrA_10	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEKI010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022282 SAMN37819545-rid19792363.denovo.02, whole genome shotgun sequence	17248..17685	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEKI010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022282 SAMN37819545-rid19792363.guided.28, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQEKI010000003.1	95374..96243	99.425	870	0						
GCA_032693165.1_PDT001939865.1_genomic.fna	Salmonella_enterica	0.522	87.411 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKJ010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045745 SAMN37819885-rid19794263.denovo.026, whole genome shotgun sequence	15468..15905	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKJ010000113.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045745 SAMN37819885-rid19794263.guided.065, whole genome shotgun sequence	7471..7908	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKJ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045745 SAMN37819885-rid19794263.denovo.015, whole genome shotgun sequence	48444..49086	enterobacteriales	IncFII(S)	100	262 / 262	DAQEKJ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045745 SAMN37819885-rid19794263.denovo.015, whole genome shotgun sequence	64171..64432																																																avrA	DAQEKJ010000010.1	107971..108840	99.885	870	0						
GCA_032693435.1_PDT001790898.1_genomic.fna	Salmonella_enterica	0.5224	497.968 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVHT010000001.1 Salmonella enterica strain PNUSAS358681 SAMN35990028-rid18561763.denovo.01, whole genome shotgun sequence	790159..790596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVHT010000022.1 Salmonella enterica strain PNUSAS358681 SAMN35990028-rid18561763.guided.13, whole genome shotgun sequence	31074..31511	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.45	193 / 193	ABNVHT010000018.1 Salmonella enterica strain PNUSAS358681 SAMN35990028-rid18561763.denovo.21, whole genome shotgun sequence	1532..1724																																																						avrA	ABNVHT010000002.1	146984..147853	98.966	870	0						
GCA_032693525.1_PDT001790895.1_genomic.fna	Salmonella_enterica	0.5206	347.267 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	-:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pHCM2),IncI1-I(Alpha),IncM1	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	-	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVHW010000001.1 Salmonella enterica strain PNUSAS358805 SAMN35990936-rid18560763.denovo.01, whole genome shotgun sequence	274979..275416	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVHW010000041.1 Salmonella enterica strain PNUSAS358805 SAMN35990936-rid18560763.guided.25, whole genome shotgun sequence	5731..6168	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	98.63	875 / 875	ABNVHW010000013.1 Salmonella enterica strain PNUSAS358805 SAMN35990936-rid18560763.denovo.13, whole genome shotgun sequence	12149..13023	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNVHW010000024.1 Salmonella enterica strain PNUSAS358805 SAMN35990936-rid18560763.denovo.26, whole genome shotgun sequence	9345..9486		enterobacteriales	IncM1	97.71	742 / 739	ABNVHW010000020.1 Salmonella enterica strain PNUSAS358805 SAMN35990936-rid18560763.denovo.21, whole genome shotgun sequence	12654..13392																																									avrA	ABNVHW010000002.1	126921..127790	98.966	870	0						
GCA_032693545.1_PDT001790894.1_genomic.fna	Salmonella_enterica	0.5187	601.138 KB	3	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCRY)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNVHX010000001.1 Salmonella enterica strain PNUSAS358518 SAMN35989211-rid18560753.denovo.01, whole genome shotgun sequence	635795..636232	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNVHX010000032.1 Salmonella enterica strain PNUSAS358518 SAMN35989211-rid18560753.guided.20, whole genome shotgun sequence	2789..3226	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABNVHX010000014.1 Salmonella enterica strain PNUSAS358518 SAMN35989211-rid18560753.denovo.14, whole genome shotgun sequence	58775..59367																																																																	
GCA_032693565.1_PDT001790893.1_genomic.fna	Salmonella_enterica	0.523	263.591 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVHY010000001.1 Salmonella enterica strain PNUSAS358509 SAMN35989228-rid18560743.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVHY010000038.1 Salmonella enterica strain PNUSAS358509 SAMN35989228-rid18560743.guided.27, whole genome shotgun sequence	8376..8813	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVHY010000005.1	149828..150697	99.655	870	0						
GCA_032693585.1_PDT001790891.1_genomic.fna	Salmonella_enterica	0.5206	490.114 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVHZ010000001.1 Salmonella enterica strain PNUSAS358459 SAMN35989756-rid18560003.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVHZ010000025.1 Salmonella enterica strain PNUSAS358459 SAMN35989756-rid18560003.guided.18, whole genome shotgun sequence	3370..3807	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVHZ010000011.1 Salmonella enterica strain PNUSAS358459 SAMN35989756-rid18560003.denovo.11, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNVHZ010000015.1 Salmonella enterica strain PNUSAS358459 SAMN35989756-rid18560003.denovo.17, whole genome shotgun sequence	3376..3637		enterobacteriales	IncX1	98.93	374 / 374	ABNVHZ010000012.1 Salmonella enterica strain PNUSAS358459 SAMN35989756-rid18560003.denovo.13, whole genome shotgun sequence	32011..32384																																									avrA	ABNVHZ010000002.1	553690..554559	99.54	870	0						
GCA_032693605.1_PDT001790892.1_genomic.fna	Salmonella_enterica	0.5133	338.87 KB	5	aroC_56,dnaN_24,hemD_28,hisD_24,purE_237,sucA_26,thrA_78	Unknown	40:z4,z24:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_56	dnaN	100	100	dnaN_24	hemD	100	100	hemD_28	hisD	100	100	hisD_24	purE	100	100	purE_237	sucA	100	100	sucA_26	thrA	100	100	thrA_78	40	z4,z24	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 40:z4,z24:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032693625.1_PDT001790889.1_genomic.fna	Salmonella_enterica	0.5203	755.636 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNVIC010000001.1 Salmonella enterica strain PNUSAS358571 SAMN35989912-rid18560713.denovo.01, whole genome shotgun sequence	1279245..1279682	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNVIC010000022.1 Salmonella enterica strain PNUSAS358571 SAMN35989912-rid18560713.guided.11, whole genome shotgun sequence	31926..32363	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVIC010000002.1	556191..557059	99.425	870	0						
GCA_032693665.1_PDT001790888.1_genomic.fna	Salmonella_enterica	0.5216	257.843 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVID010000002.1 Salmonella enterica strain PNUSAS358561 SAMN35989915-rid18561753.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVID010000041.1 Salmonella enterica strain PNUSAS358561 SAMN35989915-rid18561753.guided.21, whole genome shotgun sequence	8082..8519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVID010000023.1 Salmonella enterica strain PNUSAS358561 SAMN35989915-rid18561753.denovo.25, whole genome shotgun sequence	44704..45346	enterobacteriales	IncFII(S)	100	262 / 262	ABNVID010000023.1 Salmonella enterica strain PNUSAS358561 SAMN35989915-rid18561753.denovo.25, whole genome shotgun sequence	29358..29619																																																avrA	ABNVID010000001.1	446724..447592	100	869	0						
GCA_032693865.1_PDT001790871.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVIM010000001.1 Salmonella enterica strain PNUSAS358501 SAMN35989225-rid18559963.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVIM010000025.1 Salmonella enterica strain PNUSAS358501 SAMN35989225-rid18559963.guided.13, whole genome shotgun sequence	9768..10205	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVIM010000012.1 Salmonella enterica strain PNUSAS358501 SAMN35989225-rid18559963.denovo.12, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	ABNVIM010000016.1 Salmonella enterica strain PNUSAS358501 SAMN35989225-rid18559963.denovo.19, whole genome shotgun sequence	3414..3675																																																avrA	ABNVIM010000002.1	553636..554505	99.54	870	0						
GCA_032693885.1_PDT001790866.1_genomic.fna	Salmonella_enterica	0.5225	343.482 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVIQ010000001.1 Salmonella enterica strain PNUSAS358565 SAMN35989950-rid18560553.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVIQ010000030.1 Salmonella enterica strain PNUSAS358565 SAMN35989950-rid18560553.guided.21, whole genome shotgun sequence	6045..6482	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVIQ010000007.1	132763..133632	98.966	870	0						
GCA_032693925.1_PDT001790867.1_genomic.fna	Salmonella_enterica	0.5224	208.447 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(AP001918),IncFII(pSE11)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVIP010000001.1 Salmonella enterica strain PNUSAS358566 SAMN35989953-rid18560563.denovo.01, whole genome shotgun sequence	460188..460625	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVIP010000043.1 Salmonella enterica strain PNUSAS358566 SAMN35989953-rid18560563.guided.32, whole genome shotgun sequence	3199..3636	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNVIP010000021.1 Salmonella enterica strain PNUSAS358566 SAMN35989953-rid18560563.denovo.21, whole genome shotgun sequence	8538..9219	enterobacteriales	IncFII(pSE11)	93.98	266 / 264	ABNVIP010000021.1 Salmonella enterica strain PNUSAS358566 SAMN35989953-rid18560563.denovo.21, whole genome shotgun sequence	23068..23329																																																avrA	ABNVIP010000004.1	149828..150697	99.655	870	0						
GCA_032694205.1_PDT001790840.1_genomic.fna	Salmonella_enterica	0.521	561.572 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNVJF010000001.1 Salmonella enterica strain PNUSAS358682 SAMN35990030-rid18560363.denovo.01, whole genome shotgun sequence	818163..818600	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNVJF010000019.1 Salmonella enterica strain PNUSAS358682 SAMN35990030-rid18560363.guided.13, whole genome shotgun sequence	21775..22212	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVJF010000002.1	149701..150570	99.425	870	0						
GCA_032694265.1_PDT001790838.1_genomic.fna	Salmonella_enterica	0.5232	91.91 KB	16	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVJH010000005.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313343 SAMN35985451-rid18559903.denovo.005, whole genome shotgun sequence	13053..13490	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVJH010000077.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313343 SAMN35985451-rid18559903.denovo.081, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVJH010000077.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313343 SAMN35985451-rid18559903.denovo.081, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVJH010000077.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313343 SAMN35985451-rid18559903.denovo.081, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVJH010000077.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313343 SAMN35985451-rid18559903.denovo.081, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVJH010000077.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313343 SAMN35985451-rid18559903.denovo.081, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNVJH010000104.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313343 SAMN35985451-rid18559903.guided.072, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVJH010000105.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313343 SAMN35985451-rid18559903.guided.080, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVJH010000105.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313343 SAMN35985451-rid18559903.guided.080, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVJH010000105.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313343 SAMN35985451-rid18559903.guided.080, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVJH010000105.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313343 SAMN35985451-rid18559903.guided.080, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVJH010000105.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313343 SAMN35985451-rid18559903.guided.080, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNVJH010000078.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313343 SAMN35985451-rid18559903.denovo.083, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVJH010000106.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313343 SAMN35985451-rid18559903.guided.082, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVJH010000007.1	114533..115402	99.655	870	0						
GCA_032694305.1_PDT001790815.1_genomic.fna	Salmonella_enterica	0.5204	489.863 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVJL010000001.1 Salmonella enterica strain PNUSAS358516 SAMN35989206-rid18559833.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVJL010000024.1 Salmonella enterica strain PNUSAS358516 SAMN35989206-rid18559833.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABNVJL010000014.1 Salmonella enterica strain PNUSAS358516 SAMN35989206-rid18559833.denovo.16, whole genome shotgun sequence	32011..32384																																																						avrA	ABNVJL010000007.1	175109..175978	99.54	870	0						
GCA_032694325.1_PDT001790816.1_genomic.fna	Salmonella_enterica	0.5215	366.651 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_547	2370	8:e,h:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_547	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVJK010000001.1 Salmonella enterica strain PNUSAS358573 SAMN35989955-rid18559843.denovo.01, whole genome shotgun sequence	474785..475222	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVJK010000025.1 Salmonella enterica strain PNUSAS358573 SAMN35989955-rid18559843.guided.19, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNVJK010000019.1 Salmonella enterica strain PNUSAS358573 SAMN35989955-rid18559843.denovo.22, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNVJK010000028.1 Salmonella enterica strain PNUSAS358573 SAMN35989955-rid18559843.guided.23, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNVJK010000019.1 Salmonella enterica strain PNUSAS358573 SAMN35989955-rid18559843.denovo.22, whole genome shotgun sequence	1150..1280																																																						avrA	ABNVJK010000008.1	217462..218331	99.195	870	0						
GCA_032694345.1_PDT001790809.1_genomic.fna	Salmonella_enterica	0.5203	696.427 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVJO010000001.1 Salmonella enterica strain PNUSAS358471 SAMN35989753-rid18559783.denovo.01, whole genome shotgun sequence	642440..642877	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVJO010000022.1 Salmonella enterica strain PNUSAS358471 SAMN35989753-rid18559783.guided.14, whole genome shotgun sequence	9786..10223	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032694385.1_PDT001790808.1_genomic.fna	Salmonella_enterica	0.5221	527.092 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVJM010000001.1 Salmonella enterica strain PNUSAS358684 SAMN35990029-rid18558473.denovo.01, whole genome shotgun sequence	645144..645581	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNVJM010000019.1 Salmonella enterica strain PNUSAS358684 SAMN35990029-rid18558473.guided.15, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVJM010000002.1	561211..562081	99.656	871	0						
GCA_032694405.1_PDT001790807.1_genomic.fna	Salmonella_enterica	0.5206	406.451 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVJN010000001.1 Salmonella enterica strain PNUSAS358578 SAMN35989952-rid18559773.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVJN010000029.1 Salmonella enterica strain PNUSAS358578 SAMN35989952-rid18559773.guided.19, whole genome shotgun sequence	4085..4522	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVJN010000013.1 Salmonella enterica strain PNUSAS358578 SAMN35989952-rid18559773.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNVJN010000019.1 Salmonella enterica strain PNUSAS358578 SAMN35989952-rid18559773.denovo.21, whole genome shotgun sequence	3419..3680		enterobacteriales	IncX1	98.93	374 / 374	ABNVJN010000015.1 Salmonella enterica strain PNUSAS358578 SAMN35989952-rid18559773.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNVJN010000002.1	553690..554559	99.54	870	0						
GCA_032694425.1_PDT001790803.1_genomic.fna	Salmonella_enterica	0.5205	406.451 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVJP010000001.1 Salmonella enterica strain PNUSAS358512 SAMN35989208-rid18558463.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVJP010000030.1 Salmonella enterica strain PNUSAS358512 SAMN35989208-rid18558463.guided.24, whole genome shotgun sequence	3371..3808	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVJP010000019.1 Salmonella enterica strain PNUSAS358512 SAMN35989208-rid18558463.denovo.20, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNVJP010000020.1 Salmonella enterica strain PNUSAS358512 SAMN35989208-rid18558463.denovo.22, whole genome shotgun sequence	3398..3659		enterobacteriales	IncX1	98.93	374 / 374	ABNVJP010000015.1 Salmonella enterica strain PNUSAS358512 SAMN35989208-rid18558463.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNVJP010000002.1	553362..554231	99.54	870	0						
GCA_032694505.1_PDT001790810.1_genomic.fna	Salmonella_enterica	0.5219	223.134 KB	6	aroC_5,dnaN_14,hemD_21,hisD_9,purE_6,sucA_12,thrA_17	49	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVJQ010000001.1 Salmonella enterica strain PNUSAS358683 SAMN35990032-rid18559793.denovo.01, whole genome shotgun sequence	638924..639361	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVJQ010000049.1 Salmonella enterica strain PNUSAS358683 SAMN35990032-rid18559793.guided.17, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNVJQ010000018.1 Salmonella enterica strain PNUSAS358683 SAMN35990032-rid18559793.denovo.19, whole genome shotgun sequence	76754..76895																																																						avrA	ABNVJQ010000003.1	39465..40334	99.54	870	0						
GCA_032694625.1_PDT001790801.1_genomic.fna	Salmonella_enterica	0.5213	492.592 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVJS010000001.1 Salmonella enterica strain PNUSAS358457 SAMN35989713-rid18559723.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVJS010000024.1 Salmonella enterica strain PNUSAS358457 SAMN35989713-rid18559723.guided.19, whole genome shotgun sequence	892..1329	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVJS010000012.1 Salmonella enterica strain PNUSAS358457 SAMN35989713-rid18559723.denovo.12, whole genome shotgun sequence	40578..41220	enterobacteriales	IncFII(S)	100	262 / 262	ABNVJS010000015.1 Salmonella enterica strain PNUSAS358457 SAMN35989713-rid18559723.denovo.16, whole genome shotgun sequence	3393..3654																																																avrA	ABNVJS010000002.1	553636..554505	99.54	870	0						
GCA_032694665.1_PDT001939861.1_genomic.fna	Salmonella_enterica	0.5226	50.374 KB	33	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKP010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045811 SAMN37819888-rid19801083.denovo.073, whole genome shotgun sequence	12485..12922	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKP010000181.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045811 SAMN37819888-rid19801083.guided.024, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKP010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045811 SAMN37819888-rid19801083.denovo.025, whole genome shotgun sequence	44751..45393	enterobacteriales	IncFII(S)	100	262 / 262	DAQEKP010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045811 SAMN37819888-rid19801083.denovo.025, whole genome shotgun sequence	29405..29666																																																avrA	DAQEKP010000018.1	61666..62535	99.885	870	0						
GCA_032694725.1_PDT001939853.1_genomic.fna	Salmonella_enterica	0.5228	51.076 KB	30	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKS010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045851 SAMN37819896-rid19794243.denovo.065, whole genome shotgun sequence	12530..12967	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKS010000172.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045851 SAMN37819896-rid19794243.guided.021, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEKS010000136.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045851 SAMN37819896-rid19794243.denovo.139, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKS010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045851 SAMN37819896-rid19794243.denovo.111, whole genome shotgun sequence	9252..9894		enterobacteriales	IncFII(S)	100	262 / 262	DAQEKS010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045851 SAMN37819896-rid19794243.denovo.040, whole genome shotgun sequence	29403..29664																																									avrA	DAQEKS010000003.1	106368..107237	99.885	870	0						
GCA_032694755.1_PDT001939851.1_genomic.fna	Salmonella_enterica	0.5212	171.422 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEKT010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022446 SAMN37819547-rid19801073.denovo.06, whole genome shotgun sequence	95213..95650	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEKT010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022446 SAMN37819547-rid19801073.guided.30, whole genome shotgun sequence	38479..38916	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEKT010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022446 SAMN37819547-rid19801073.denovo.33, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQEKT010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022446 SAMN37819547-rid19801073.denovo.42, whole genome shotgun sequence	3414..3675																																																avrA	DAQEKT010000005.1	140958..141827	99.54	870	0						
GCA_032694775.1_PDT001939841.1_genomic.fna	Salmonella_enterica	0.5219	102.242 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKU010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046816 SAMN37819993-rid19801063.denovo.021, whole genome shotgun sequence	14128..14565	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKU010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046816 SAMN37819993-rid19801063.guided.068, whole genome shotgun sequence	13887..14324	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKU010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046816 SAMN37819993-rid19801063.denovo.018, whole genome shotgun sequence	43096..43738	enterobacteriales	IncFII(S)	100	262 / 262	DAQEKU010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046816 SAMN37819993-rid19801063.denovo.018, whole genome shotgun sequence	58823..59084		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEKU010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046816 SAMN37819993-rid19801063.denovo.037, whole genome shotgun sequence	22488..22624																																									avrA	DAQEKU010000005.1	108105..108974	99.885	870	0						
GCA_032694805.1_PDT001939808.1_genomic.fna	Salmonella_enterica	0.5223	62.294 KB	22	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKV010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049127 SAMN37820108-rid19793153.denovo.010, whole genome shotgun sequence	81944..82381	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKV010000148.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049127 SAMN37820108-rid19793153.guided.104, whole genome shotgun sequence	3622..4059	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKV010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049127 SAMN37820108-rid19793153.denovo.012, whole genome shotgun sequence	48415..49057	enterobacteriales	IncFII(S)	100	262 / 262	DAQEKV010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049127 SAMN37820108-rid19793153.denovo.012, whole genome shotgun sequence	64142..64403																																																avrA	DAQEKV010000004.1	61079..61948	99.885	870	0						
GCA_032694825.1_PDT001939806.1_genomic.fna	Salmonella_enterica	0.5214	130.05 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049222 SAMN37820110-rid19801043.denovo.01, whole genome shotgun sequence	145317..145754	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKW010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049222 SAMN37820110-rid19801043.guided.17, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKW010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049222 SAMN37820110-rid19801043.denovo.20, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQEKW010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049222 SAMN37820110-rid19801043.denovo.20, whole genome shotgun sequence	60371..60632																																																avrA	DAQEKW010000014.1	39625..40494	99.885	870	0						
GCA_032694855.1_PDT001939804.1_genomic.fna	Salmonella_enterica	0.5217	92.856 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKY010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049227 SAMN37820112-rid19803743.denovo.02, whole genome shotgun sequence	52520..52957	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKY010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049227 SAMN37820112-rid19803743.guided.45, whole genome shotgun sequence	24984..25421	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKY010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049227 SAMN37820112-rid19803743.denovo.16, whole genome shotgun sequence	44647..45289	enterobacteriales	IncFII(S)	100	262 / 262	DAQEKY010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049227 SAMN37820112-rid19803743.denovo.16, whole genome shotgun sequence	60374..60635																																																avrA	DAQEKY010000003.1	107917..108786	99.885	870	0						
GCA_032694885.1_PDT001939796.1_genomic.fna	Salmonella_enterica	0.5219	93.801 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A),dfrA5,dfrA5	0		4	IncFIB(S),IncFIB(pB171),IncFII(S),IncFII(pHN7A8)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKZ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.denovo.002, whole genome shotgun sequence	145233..145670	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQEKZ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.denovo.087, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQEKZ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.denovo.087, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aph(3')-Ia	100	816/816	DAQEKZ010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.denovo.103, whole genome shotgun sequence	137..952	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	V00359	aac(6')-Iaa	100	438/438	DAQEKZ010000107.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.guided.079, whole genome shotgun sequence	7334..7771	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQEKZ010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.guided.086, whole genome shotgun sequence	3348..4184	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQEKZ010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.guided.086, whole genome shotgun sequence	2545..3348	Streptomycin	AF321551	aph(3')-Ia	100	816/816	DAQEKZ010000112.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.guided.101, whole genome shotgun sequence	126..941	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	V00359	blaTEM-1B	100	861/861	DAQEKZ010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.denovo.095, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQEKZ010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.guided.093, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	DAQEKZ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.denovo.087, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	DAQEKZ010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.guided.086, whole genome shotgun sequence	1669..2484	Sulfamethoxazole	HQ840942	tet(A)	100	1200/1200	DAQEKZ010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.denovo.088, whole genome shotgun sequence	1554..2753	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQEKZ010000110.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.guided.090, whole genome shotgun sequence	14..1213	Doxycycline, Tetracycline	AJ517790	dfrA5	100	474/474	DAQEKZ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.denovo.084, whole genome shotgun sequence	98..571	Trimethoprim	X12868	dfrA5	100	474/474	DAQEKZ010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.guided.085, whole genome shotgun sequence	3716..4189	Trimethoprim	X12868																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKZ010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.denovo.018, whole genome shotgun sequence	48411..49053	enterobacteriales	IncFIB(pB171)	98.44	643 / 643	DAQEKZ010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.denovo.064, whole genome shotgun sequence	2671..3307		enterobacteriales	IncFII(S)	100	262 / 262	DAQEKZ010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.denovo.018, whole genome shotgun sequence	64138..64399		enterobacteriales	IncFII(pHN7A8)	97.69	260 / 260	DAQEKZ010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049504 SAMN37820119-rid19801033.denovo.071, whole genome shotgun sequence	426..685																																		avrA	DAQEKZ010000042.1	39625..40494	99.885	870	0						
GCA_032694905.1_PDT001939798.1_genomic.fna	Salmonella_enterica	0.5209	140.519 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEKX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023697 SAMN37819569-rid19794233.denovo.01, whole genome shotgun sequence	162396..162833	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEKX010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023697 SAMN37819569-rid19794233.guided.25, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEKX010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023697 SAMN37819569-rid19794233.denovo.31, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQEKX010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023697 SAMN37819569-rid19794233.denovo.48, whole genome shotgun sequence	3418..3679		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQEKX010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023697 SAMN37819569-rid19794233.denovo.19, whole genome shotgun sequence	22337..22478																																									avrA	DAQEKX010000006.1	140720..141589	99.54	870	0						
GCA_032694925.1_PDT001939788.1_genomic.fna	Salmonella_enterica	0.522	83.116 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQELB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049554 SAMN37820127-rid19794223.denovo.001, whole genome shotgun sequence	145128..145565	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQELB010000112.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049554 SAMN37820127-rid19794223.guided.040, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQELB010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049554 SAMN37820127-rid19794223.denovo.014, whole genome shotgun sequence	48417..49059	enterobacteriales	IncFII(S)	100	262 / 262	DAQELB010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049554 SAMN37820127-rid19794223.denovo.014, whole genome shotgun sequence	64144..64405																																																avrA	DAQELB010000008.1	39625..40494	99.885	870	0						
GCA_032694945.1_PDT001939794.1_genomic.fna	Salmonella_enterica	0.5215	159.766 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncB/O/K/Z,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQELA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049518 SAMN37820121-rid19802433.denovo.01, whole genome shotgun sequence	145233..145670	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQELA010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049518 SAMN37820121-rid19802433.guided.33, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncB/O/K/Z	92	150 / 149	DAQELA010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049518 SAMN37820121-rid19802433.denovo.22, whole genome shotgun sequence	66551..66699	enterobacteriales	IncFIB(S)	100	643 / 643	DAQELA010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049518 SAMN37820121-rid19802433.denovo.18, whole genome shotgun sequence	48415..49057		enterobacteriales	IncFII(S)	100	262 / 262	DAQELA010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049518 SAMN37820121-rid19802433.denovo.18, whole genome shotgun sequence	64142..64403																																									avrA	DAQELA010000007.1	39625..40494	99.885	870	0						
GCA_032694965.1_PDT001939778.1_genomic.fna	Salmonella_enterica	0.5217	89.001 KB	17	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQELD010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028840 SAMN37819675-rid19799263.denovo.021, whole genome shotgun sequence	25650..26087	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQELD010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028840 SAMN37819675-rid19799263.guided.054, whole genome shotgun sequence	9840..10277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQELD010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028840 SAMN37819675-rid19799263.denovo.083, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQELD010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028840 SAMN37819675-rid19799263.denovo.053, whole genome shotgun sequence	18067..18709		enterobacteriales	IncFII(S)	100	262 / 262	DAQELD010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028840 SAMN37819675-rid19799263.denovo.053, whole genome shotgun sequence	3423..3684																																									avrA	DAQELD010000020.1	43566..44435	99.54	870	0						
GCA_032694985.1_PDT001939776.1_genomic.fna	Salmonella_enterica	0.5212	135.764 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQELE010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028843 SAMN37819677-rid19801003.denovo.47, whole genome shotgun sequence	1562..1999	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQELE010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028843 SAMN37819677-rid19801003.guided.29, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQELE010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028843 SAMN37819677-rid19801003.denovo.53, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQELE010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028843 SAMN37819677-rid19801003.denovo.31, whole genome shotgun sequence	40527..41169		enterobacteriales	IncFII(S)	100	262 / 262	DAQELE010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028843 SAMN37819677-rid19801003.denovo.31, whole genome shotgun sequence	55552..55813																																									avrA	DAQELE010000005.1	140776..141645	99.54	870	0						
GCA_032695005.1_PDT001939786.1_genomic.fna	Salmonella_enterica	0.5215	169.538 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQELC010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021605 SAMN37819524-rid19801023.denovo.09, whole genome shotgun sequence	17246..17683	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQELC010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021605 SAMN37819524-rid19801023.guided.38, whole genome shotgun sequence	7618..8055	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQELC010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021605 SAMN37819524-rid19801023.denovo.27, whole genome shotgun sequence	48470..49112	enterobacteriales	IncFII(S)	100	262 / 262	DAQELC010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021605 SAMN37819524-rid19801023.denovo.27, whole genome shotgun sequence	4217..4478																																																avrA	DAQELC010000005.1	140958..141827	99.54	870	0						
GCA_032695065.1_PDT001790792.1_genomic.fna	Salmonella_enterica	0.519	237.358 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVJY010000014.1 Salmonella enterica strain 23SC06CG01-S1 isolate SALM23-0349 SAMN35989966-rid18559643.denovo.14, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVJY010000026.1 Salmonella enterica strain 23SC06CG01-S1 isolate SALM23-0349 SAMN35989966-rid18559643.denovo.26, whole genome shotgun sequence	48316..49152	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNVJY010000026.1 Salmonella enterica strain 23SC06CG01-S1 isolate SALM23-0349 SAMN35989966-rid18559643.denovo.26, whole genome shotgun sequence	49152..49955	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNVJY010000058.1 Salmonella enterica strain 23SC06CG01-S1 isolate SALM23-0349 SAMN35989966-rid18559643.guided.45, whole genome shotgun sequence	3290..3727	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVJY010000060.1 Salmonella enterica strain 23SC06CG01-S1 isolate SALM23-0349 SAMN35989966-rid18559643.guided.50, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNVJY010000060.1 Salmonella enterica strain 23SC06CG01-S1 isolate SALM23-0349 SAMN35989966-rid18559643.guided.50, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNVJY010000043.1 Salmonella enterica strain 23SC06CG01-S1 isolate SALM23-0349 SAMN35989966-rid18559643.denovo.46, whole genome shotgun sequence	1822..3027	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNVJY010000059.1 Salmonella enterica strain 23SC06CG01-S1 isolate SALM23-0349 SAMN35989966-rid18559643.guided.48, whole genome shotgun sequence	4199..5404	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNVJY010000033.1 Salmonella enterica strain 23SC06CG01-S1 isolate SALM23-0349 SAMN35989966-rid18559643.denovo.33, whole genome shotgun sequence	1830..2511	enterobacteriales	IncFII	96.95	262 / 261	ABNVJY010000026.1 Salmonella enterica strain 23SC06CG01-S1 isolate SALM23-0349 SAMN35989966-rid18559643.denovo.26, whole genome shotgun sequence	47432..47693		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNVJY010000037.1 Salmonella enterica strain 23SC06CG01-S1 isolate SALM23-0349 SAMN35989966-rid18559643.denovo.37, whole genome shotgun sequence	5959..6100		enterobacteriales	IncX1	100	373 / 373	ABNVJY010000039.1 Salmonella enterica strain 23SC06CG01-S1 isolate SALM23-0349 SAMN35989966-rid18559643.denovo.39, whole genome shotgun sequence	2153..2525																																		avrA	ABNVJY010000015.1	102634..103503	99.655	870	0						
GCA_032695085.1_PDT001790794.1_genomic.fna	Salmonella_enterica	0.5222	109.439 KB	12	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVJX010000032.1 Salmonella enterica strain PNUSAS358564 SAMN35989949-rid18559653.denovo.32, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVJX010000072.1 Salmonella enterica strain PNUSAS358564 SAMN35989949-rid18559653.guided.54, whole genome shotgun sequence	10144..10581	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABNVJX010000030.1 Salmonella enterica strain PNUSAS358564 SAMN35989949-rid18559653.denovo.30, whole genome shotgun sequence	25281..25540																																																																	
GCA_032695145.1_PDT001790789.1_genomic.fna	Salmonella_enterica	0.5188	558.801 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	IncFIA(HI1),IncHI1A,IncHI1B(R27),IncY	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVKB010000001.1 Salmonella enterica strain PNUSAS358468 SAMN35989750-rid18559623.denovo.01, whole genome shotgun sequence	502406..502843	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVKB010000062.1 Salmonella enterica strain PNUSAS358468 SAMN35989750-rid18559623.guided.30, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIA(HI1)	98.45	387 / 388	ABNVKB010000031.1 Salmonella enterica strain PNUSAS358468 SAMN35989750-rid18559623.denovo.34, whole genome shotgun sequence	6794..7180	enterobacteriales	IncHI1A	99.76	420 / 420	ABNVKB010000020.1 Salmonella enterica strain PNUSAS358468 SAMN35989750-rid18559623.denovo.21, whole genome shotgun sequence	12689..13108		enterobacteriales	IncHI1B(R27)	100	540 / 540	ABNVKB010000025.1 Salmonella enterica strain PNUSAS358468 SAMN35989750-rid18559623.denovo.26, whole genome shotgun sequence	19012..19551	R27	enterobacteriales	IncY	99.48	765 / 765	ABNVKB010000024.1 Salmonella enterica strain PNUSAS358468 SAMN35989750-rid18559623.denovo.25, whole genome shotgun sequence	799..1563																																		avrA	ABNVKB010000004.1	179459..180328	98.966	870	0						
GCA_032695165.1_PDT001790787.1_genomic.fna	Salmonella_enterica	0.5217	257.842 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncL	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVKD010000002.1 Salmonella enterica strain PNUSAS358574 SAMN35989917-rid18559603.denovo.02, whole genome shotgun sequence	145222..145659	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVKD010000048.1 Salmonella enterica strain PNUSAS358574 SAMN35989917-rid18559603.guided.30, whole genome shotgun sequence	10211..10648	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVKD010000015.1 Salmonella enterica strain PNUSAS358574 SAMN35989917-rid18559603.denovo.15, whole genome shotgun sequence	6826..7468	enterobacteriales	IncFII(S)	100	262 / 262	ABNVKD010000015.1 Salmonella enterica strain PNUSAS358574 SAMN35989917-rid18559603.denovo.15, whole genome shotgun sequence	22553..22814		enterobacteriales	IncL	95.2	666 / 661	ABNVKD010000023.1 Salmonella enterica strain PNUSAS358574 SAMN35989917-rid18559603.denovo.23, whole genome shotgun sequence	25714..26377																																									avrA	ABNVKD010000001.1	450786..451655	99.885	870	0						
GCA_032695185.1_PDT001790788.1_genomic.fna	Salmonella_enterica	0.522	377.054 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVKC010000004.1 Salmonella enterica strain PNUSAS358506 SAMN35989203-rid18559613.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVKC010000045.1 Salmonella enterica strain PNUSAS358506 SAMN35989203-rid18559613.guided.29, whole genome shotgun sequence	12072..12509	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVKC010000015.1 Salmonella enterica strain PNUSAS358506 SAMN35989203-rid18559613.denovo.15, whole genome shotgun sequence	48478..49120	enterobacteriales	IncFII(S)	100	262 / 262	ABNVKC010000015.1 Salmonella enterica strain PNUSAS358506 SAMN35989203-rid18559613.denovo.15, whole genome shotgun sequence	64204..64465																																																avrA	ABNVKC010000001.1	483839..484707	100	869	0						
GCA_032695205.1_PDT001790786.1_genomic.fna	Salmonella_enterica	0.5198	489.647 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVKE010000001.1 Salmonella enterica strain PNUSAS358475 SAMN35989718-rid18559593.denovo.01, whole genome shotgun sequence	733719..734156	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVKE010000024.1 Salmonella enterica strain PNUSAS358475 SAMN35989718-rid18559593.guided.17, whole genome shotgun sequence	734..1171	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVKE010000011.1 Salmonella enterica strain PNUSAS358475 SAMN35989718-rid18559593.denovo.11, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNVKE010000011.1 Salmonella enterica strain PNUSAS358475 SAMN35989718-rid18559593.denovo.11, whole genome shotgun sequence	55622..55883		enterobacteriales	IncX1	98.67	377 / 377	ABNVKE010000012.1 Salmonella enterica strain PNUSAS358475 SAMN35989718-rid18559593.denovo.12, whole genome shotgun sequence	6390..6766																																									avrA	ABNVKE010000002.1	553108..553977	99.54	870	0						
GCA_032695235.1_PDT001790784.1_genomic.fna	Salmonella_enterica	0.5216	219.551 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVKI010000001.1 Salmonella enterica strain PNUSAS358576 SAMN35989908-rid18559573.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVKI010000036.1 Salmonella enterica strain PNUSAS358576 SAMN35989908-rid18559573.guided.24, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVKI010000002.1	208425..209293	99.77	870	0						
GCA_032695265.1_PDT001790785.1_genomic.fna	Salmonella_enterica	0.5198	395.734 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_4	371	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNVKF010000001.1 Salmonella enterica strain PNUSAS358563 SAMN35989911-rid18559583.denovo.01, whole genome shotgun sequence	461504..461941	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNVKF010000026.1 Salmonella enterica strain PNUSAS358563 SAMN35989911-rid18559583.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVKF010000002.1	545108..545977	99.54	870	0						
GCA_032695275.1_PDT001790783.1_genomic.fna	Salmonella_enterica	0.5224	381.275 KB	4	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNVKG010000001.1 Salmonella enterica strain PNUSAS358570 SAMN35989914-rid18558433.denovo.01, whole genome shotgun sequence	307821..308258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNVKG010000030.1 Salmonella enterica strain PNUSAS358570 SAMN35989914-rid18558433.guided.23, whole genome shotgun sequence	249..686	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032695305.1_PDT001790780.1_genomic.fna	Salmonella_enterica	0.5221	304.557 KB	5	aroC_233,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	814	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_233	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVKL010000001.1 Salmonella enterica strain PNUSAS358456 SAMN35989755-rid18559553.denovo.01, whole genome shotgun sequence	746087..746524	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVKL010000037.1 Salmonella enterica strain PNUSAS358456 SAMN35989755-rid18559553.guided.26, whole genome shotgun sequence	3279..3716	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVKL010000018.1 Salmonella enterica strain PNUSAS358456 SAMN35989755-rid18559553.denovo.18, whole genome shotgun sequence	61115..61757	enterobacteriales	IncFII(S)	100	262 / 262	ABNVKL010000025.1 Salmonella enterica strain PNUSAS358456 SAMN35989755-rid18559553.denovo.28, whole genome shotgun sequence	721..982																																																avrA	ABNVKL010000007.1	140526..141395	99.54	870	0						
GCA_032695385.1_PDT001790770.1_genomic.fna	Salmonella_enterica	0.5138	272.287 KB	8	aroC_88,dnaN_26,hemD_30,hisD_55,purE_21,sucA_68,thrA_80	432	61:k:1,5,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_55	purE	100	100	purE_21	sucA	100	100	sucA_68	thrA	100	100	thrA_80	61	k	1,5,7	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:k:1,5,(7)		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVKQ010000012.1 Salmonella enterica strain PNUSAS358467 SAMN35989721-rid18559473.denovo.12, whole genome shotgun sequence	82328..82765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVKQ010000041.1 Salmonella enterica strain PNUSAS358467 SAMN35989721-rid18559473.guided.35, whole genome shotgun sequence	1019..1456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	99.73	377 / 377	ABNVKQ010000025.1 Salmonella enterica strain PNUSAS358467 SAMN35989721-rid18559473.denovo.25, whole genome shotgun sequence	13303..13679																																																						avrA	ABNVKQ010000004.1	133613..134482	96.552	870	0						
GCA_032695485.1_PDT001790682.1_genomic.fna	Salmonella_enterica	0.5221	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVKS010000001.1 Salmonella enterica strain 23WA06CL01-S1 SAMN35989716-rid18558723.denovo.01, whole genome shotgun sequence	833828..834265	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVKS010000026.1 Salmonella enterica strain 23WA06CL01-S1 SAMN35989716-rid18558723.guided.17, whole genome shotgun sequence	2807..3244	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVKS010000002.1	129887..130756	98.966	870	0						
GCA_032695525.1_PDT001790679.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVKU010000001.1 Salmonella enterica strain PNUSAS358463 SAMN35989720-rid18558703.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVKU010000025.1 Salmonella enterica strain PNUSAS358463 SAMN35989720-rid18558703.guided.18, whole genome shotgun sequence	12937..13374	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVKU010000013.1 Salmonella enterica strain PNUSAS358463 SAMN35989720-rid18558703.denovo.14, whole genome shotgun sequence	40544..41186	enterobacteriales	IncFII(S)	100	262 / 262	ABNVKU010000017.1 Salmonella enterica strain PNUSAS358463 SAMN35989720-rid18558703.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABNVKU010000002.1	553635..554504	99.54	870	0						
GCA_032695545.1_PDT001790676.1_genomic.fna	Salmonella_enterica	0.5215	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVKW010000001.1 Salmonella enterica strain PNUSAS358502 SAMN35989227-rid18558253.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVKW010000023.1 Salmonella enterica strain PNUSAS358502 SAMN35989227-rid18558253.guided.16, whole genome shotgun sequence	5245..5682	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABNVKW010000002.1	553636..554505	99.54	870	0						
GCA_032695565.1_PDT001790677.1_genomic.fna	Salmonella_enterica	0.521	655.063 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVKV010000002.1 Salmonella enterica strain PNUSAS358508 SAMN35989224-rid18558683.denovo.02, whole genome shotgun sequence	710172..710609	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.48	388/438	ABNVKV010000037.1 Salmonella enterica strain PNUSAS358508 SAMN35989224-rid18558683.guided.26, whole genome shotgun sequence	1..388	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNVKV010000015.1 Salmonella enterica strain PNUSAS358508 SAMN35989224-rid18558683.denovo.15, whole genome shotgun sequence	20207..20849																																																						avrA	ABNVKV010000004.1	559344..560213	99.425	870	0						
GCA_032695585.1_PDT001940404.1_genomic.fna	Salmonella_enterica	0.5206	142.21 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQELF010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00029137 SAMN37819685-rid19805283.denovo.03, whole genome shotgun sequence	232657..233094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQELF010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00029137 SAMN37819685-rid19805283.guided.32, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQELF010000006.1	93808..94677	99.77	870	0						
GCA_032695625.1_PDT001940402.1_genomic.fna	Salmonella_enterica	0.5208	451.276 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQELG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029157 SAMN37819687-rid19803923.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQELG010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029157 SAMN37819687-rid19803923.guided.22, whole genome shotgun sequence	451..888	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQELG010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029157 SAMN37819687-rid19803923.denovo.26, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQELG010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029157 SAMN37819687-rid19803923.denovo.16, whole genome shotgun sequence	40533..41175		enterobacteriales	IncFII(S)	100	262 / 262	DAQELG010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029157 SAMN37819687-rid19803923.denovo.16, whole genome shotgun sequence	55558..55819																																									avrA	DAQELG010000004.1	140958..141827	99.54	870	0						
GCA_032695645.1_PDT001940382.1_genomic.fna	Salmonella_enterica	0.5215	97.061 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQELH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041690 SAMN37819791-rid19806533.denovo.01, whole genome shotgun sequence	52050..52487	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQELH010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041690 SAMN37819791-rid19806533.guided.34, whole genome shotgun sequence	36584..37021	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQELH010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041690 SAMN37819791-rid19806533.denovo.38, whole genome shotgun sequence	35188..35830	enterobacteriales	IncFII(S)	100	262 / 262	DAQELH010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041690 SAMN37819791-rid19806533.denovo.68, whole genome shotgun sequence	3413..3674																																																avrA	DAQELH010000003.1	140763..141632	99.54	870	0						
GCA_032695665.1_PDT001940347.1_genomic.fna	Salmonella_enterica	0.5224	55.394 KB	25	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQELI010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045882 SAMN37819908-rid19803913.denovo.010, whole genome shotgun sequence	12488..12925	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQELI010000151.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045882 SAMN37819908-rid19803913.guided.025, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQELI010000121.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045882 SAMN37819908-rid19803913.denovo.124, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQELI010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045882 SAMN37819908-rid19803913.denovo.011, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	DAQELI010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045882 SAMN37819908-rid19803913.denovo.011, whole genome shotgun sequence	30407..30668																																									avrA	DAQELI010000003.1	107937..108806	99.885	870	0						
GCA_032695685.1_PDT001940317.1_genomic.fna	Salmonella_enterica	0.5214	114.37 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQELJ010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047121 SAMN37820022-rid19805253.denovo.05, whole genome shotgun sequence	207028..207465	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQELJ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047121 SAMN37820022-rid19805253.guided.55, whole genome shotgun sequence	9855..10292	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQELJ010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047121 SAMN37820022-rid19805253.denovo.19, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQELJ010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047121 SAMN37820022-rid19805253.denovo.19, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQELJ010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047121 SAMN37820022-rid19805253.denovo.21, whole genome shotgun sequence	15833..15969																																									avrA	DAQELJ010000006.1	107905..108774	99.885	870	0						
GCA_032695705.1_PDT001940297.1_genomic.fna	Salmonella_enterica	0.5218	132.13 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQELK010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047925 SAMN37820040-rid19805233.denovo.15, whole genome shotgun sequence	52522..52959	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQELK010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047925 SAMN37820040-rid19805233.guided.34, whole genome shotgun sequence	15536..15973	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQELK010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047925 SAMN37820040-rid19805233.denovo.16, whole genome shotgun sequence	14689..15331	enterobacteriales	IncFII(S)	100	262 / 262	DAQELK010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047925 SAMN37820040-rid19805233.denovo.16, whole genome shotgun sequence	30416..30677																																																avrA	DAQELK010000005.1	108324..109193	99.885	870	0						
GCA_032695725.1_PDT001940285.1_genomic.fna	Salmonella_enterica	0.5194	213.566 KB	8	aroC_15,dnaN_126,hemD_101*,hisD_88,purE_8,sucA_19,thrA_18	446*	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_126	hemD	99.7685185185185	100	hemD_101*	hisD	100	100	hisD_88	purE	100	100	purE_8	sucA	100	100	sucA_19	thrA	100	100	thrA_18	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQELL010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00023893 SAMN37819571-rid19806503.denovo.04, whole genome shotgun sequence	79198..79635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQELL010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00023893 SAMN37819571-rid19806503.guided.33, whole genome shotgun sequence	31149..31586	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQELL010000009.1	151399..152268	99.77	870	0						
GCA_032695745.1_PDT001940295.1_genomic.fna	Salmonella_enterica	0.5214	96.474 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQELM010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049555 SAMN37820128-rid19805223.denovo.002, whole genome shotgun sequence	154002..154439	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQELM010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049555 SAMN37820128-rid19805223.guided.011, whole genome shotgun sequence	24984..25421	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQELM010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049555 SAMN37820128-rid19805223.denovo.015, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	DAQELM010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049555 SAMN37820128-rid19805223.denovo.015, whole genome shotgun sequence	64139..64400																																																avrA	DAQELM010000009.1	39625..40494	99.885	870	0						
GCA_032695765.1_PDT001940275.1_genomic.fna	Salmonella_enterica	0.5208	261.211 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQELN010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023922 SAMN37819573-rid19807823.denovo.02, whole genome shotgun sequence	242050..242487	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQELN010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023922 SAMN37819573-rid19807823.guided.31, whole genome shotgun sequence	1942..2379	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	DAQELN010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023922 SAMN37819573-rid19807823.denovo.37, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQELN010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023922 SAMN37819573-rid19807823.guided.38, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQELN010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023922 SAMN37819573-rid19807823.denovo.21, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQELN010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023922 SAMN37819573-rid19807823.denovo.32, whole genome shotgun sequence	3412..3673		enterobacteriales	IncX1	95.76	377 / 377	DAQELN010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023922 SAMN37819573-rid19807823.denovo.22, whole genome shotgun sequence	4749..5125																																									avrA	DAQELN010000001.1	552989..553858	99.54	870	0						
GCA_032695785.1_PDT001940255.1_genomic.fna	Salmonella_enterica	0.5215	99.639 KB	17	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQELO010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030532 SAMN37819704-rid19807813.denovo.04, whole genome shotgun sequence	20221..20658	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQELO010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030532 SAMN37819704-rid19807813.guided.21, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQELO010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030532 SAMN37819704-rid19807813.denovo.37, whole genome shotgun sequence	40536..41178	enterobacteriales	IncFII(S)	100	262 / 262	DAQELO010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00030532 SAMN37819704-rid19807813.denovo.71, whole genome shotgun sequence	3417..3678																																																avrA	DAQELO010000008.1	62026..62895	99.54	870	0						
GCA_032695805.1_PDT001940210.1_genomic.fna	Salmonella_enterica	0.521	142.892 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQELQ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045401 SAMN37819831-rid19807803.denovo.02, whole genome shotgun sequence	108771..109208	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQELQ010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045401 SAMN37819831-rid19807803.guided.37, whole genome shotgun sequence	1989..2426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQELQ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045401 SAMN37819831-rid19807803.denovo.33, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQELQ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045401 SAMN37819831-rid19807803.denovo.52, whole genome shotgun sequence	3423..3684																																																avrA	DAQELQ010000009.1	60947..61816	99.54	870	0						
GCA_032695825.1_PDT001940230.1_genomic.fna	Salmonella_enterica	0.5219	80.04 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQELP010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045107 SAMN37819812-rid19805203.denovo.004, whole genome shotgun sequence	38039..38476	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQELP010000120.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045107 SAMN37819812-rid19805203.guided.040, whole genome shotgun sequence	13038..13475	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQELP010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045107 SAMN37819812-rid19805203.denovo.013, whole genome shotgun sequence	48411..49053	enterobacteriales	IncFII(S)	100	262 / 262	DAQELP010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045107 SAMN37819812-rid19805203.denovo.013, whole genome shotgun sequence	64138..64399																																																avrA	DAQELP010000007.1	39625..40494	99.885	870	0						
GCA_032695865.1_PDT001940195.1_genomic.fna	Salmonella_enterica	0.5216	126.204 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQELR010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046050 SAMN37819931-rid19803883.denovo.14, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQELR010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046050 SAMN37819931-rid19803883.guided.57, whole genome shotgun sequence	7400..7837	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQELR010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046050 SAMN37819931-rid19803883.denovo.19, whole genome shotgun sequence	48444..49086	enterobacteriales	IncFII(S)	100	262 / 262	DAQELR010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046050 SAMN37819931-rid19803883.denovo.19, whole genome shotgun sequence	64171..64432																																																avrA	DAQELR010000007.1	61077..61946	99.885	870	0						
GCA_032695885.1_PDT001940178.1_genomic.fna	Salmonella_enterica	0.5212	184.706 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQELS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046301 SAMN37819947-rid19807783.denovo.01, whole genome shotgun sequence	145241..145678	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQELS010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046301 SAMN37819947-rid19807783.guided.28, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQELS010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046301 SAMN37819947-rid19807783.denovo.18, whole genome shotgun sequence	48416..49058	enterobacteriales	IncFII(S)	100	262 / 262	DAQELS010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046301 SAMN37819947-rid19807783.denovo.18, whole genome shotgun sequence	64143..64404		enterobacteriales	IncI(Gamma)	98.54	137 / 141	DAQELS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046301 SAMN37819947-rid19807783.denovo.33, whole genome shotgun sequence	22488..22624																																									avrA	DAQELS010000014.1	39625..40494	99.885	870	0						
GCA_032695905.1_PDT001940173.1_genomic.fna	Salmonella_enterica	0.5216	114.385 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQELT010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046429 SAMN37819951-rid19805183.denovo.27, whole genome shotgun sequence	20902..21339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQELT010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046429 SAMN37819951-rid19805183.guided.30, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQELT010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046429 SAMN37819951-rid19805183.denovo.19, whole genome shotgun sequence	14689..15331	enterobacteriales	IncFII(S)	100	262 / 262	DAQELT010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046429 SAMN37819951-rid19805183.denovo.19, whole genome shotgun sequence	30416..30677																																																avrA	DAQELT010000006.1	108279..109148	99.885	870	0						
GCA_032695925.1_PDT001940163.1_genomic.fna	Salmonella_enterica	0.5212	160.595 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQELV010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048033 SAMN37820047-rid19803843.denovo.03, whole genome shotgun sequence	206854..207291	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQELV010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048033 SAMN37820047-rid19803843.guided.27, whole genome shotgun sequence	7935..8372	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQELV010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048033 SAMN37820047-rid19803843.denovo.19, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQELV010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048033 SAMN37820047-rid19803843.denovo.19, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQELV010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048033 SAMN37820047-rid19803843.denovo.33, whole genome shotgun sequence	22488..22624																																									avrA	DAQELV010000011.1	61077..61946	99.885	870	0						
GCA_032695945.1_PDT001940165.1_genomic.fna	Salmonella_enterica	0.5218	150.637 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQELU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048028 SAMN37820045-rid19805173.denovo.01, whole genome shotgun sequence	113297..113734	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQELU010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048028 SAMN37820045-rid19805173.guided.50, whole genome shotgun sequence	9246..9683	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQELU010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048028 SAMN37820045-rid19805173.denovo.18, whole genome shotgun sequence	48418..49060	enterobacteriales	IncFII(S)	100	262 / 262	DAQELU010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048028 SAMN37820045-rid19805173.denovo.18, whole genome shotgun sequence	64145..64406																																																avrA	DAQELU010000005.1	122941..123810	99.885	870	0						
GCA_032695965.1_PDT001940143.1_genomic.fna	Salmonella_enterica	0.5216	145.227 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQELW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048490 SAMN37820065-rid19806483.denovo.01, whole genome shotgun sequence	206854..207291	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQELW010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048490 SAMN37820065-rid19806483.guided.28, whole genome shotgun sequence	10195..10632	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQELW010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048490 SAMN37820065-rid19806483.denovo.16, whole genome shotgun sequence	48423..49065	enterobacteriales	IncFII(S)	100	262 / 262	DAQELW010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048490 SAMN37820065-rid19806483.denovo.16, whole genome shotgun sequence	64150..64411																																																avrA	DAQELW010000021.1	39625..40494	99.885	870	0						
GCA_032695985.1_PDT001940118.1_genomic.fna	Salmonella_enterica	0.5213	114.814 KB	15	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQELX010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025472 SAMN37819600-rid19802493.denovo.15, whole genome shotgun sequence	62351..62788	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQELX010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025472 SAMN37819600-rid19802493.guided.44, whole genome shotgun sequence	21671..22108	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQELX010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025472 SAMN37819600-rid19802493.denovo.39, whole genome shotgun sequence	35838..36480	enterobacteriales	IncFII(S)	100	262 / 262	DAQELX010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025472 SAMN37819600-rid19802493.denovo.61, whole genome shotgun sequence	3412..3673																																																avrA	DAQELX010000004.1	115392..116261	99.54	870	0						
GCA_032696005.1_PDT001940108.1_genomic.fna	Salmonella_enterica	0.5208	220.727 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQELY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021566 SAMN37819518-rid19803833.denovo.01, whole genome shotgun sequence	162778..163215	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQELY010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021566 SAMN37819518-rid19803833.guided.33, whole genome shotgun sequence	10237..10674	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	DAQELY010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021566 SAMN37819518-rid19803833.denovo.40, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQELY010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021566 SAMN37819518-rid19803833.guided.42, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQELY010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021566 SAMN37819518-rid19803833.denovo.26, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	DAQELY010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021566 SAMN37819518-rid19803833.denovo.37, whole genome shotgun sequence	3433..3694		enterobacteriales	IncX1	95.76	377 / 377	DAQELY010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021566 SAMN37819518-rid19803833.denovo.29, whole genome shotgun sequence	4749..5125																																									avrA	DAQELY010000007.1	140846..141715	99.54	870	0						
GCA_032696025.1_PDT001940068.1_genomic.fna	Salmonella_enterica	0.5185	224.594 KB	8	aroC_139,dnaN_174,hemD_68,hisD_132,purE_133,sucA_9,thrA_168	578	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_139	dnaN	100	100	dnaN_174	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_133	sucA	100	100	sucA_9	thrA	100	100	thrA_168	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQEMC010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00035698 SAMN37819730-rid19805163.denovo.07, whole genome shotgun sequence	82307..82744	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQEMC010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00035698 SAMN37819730-rid19805163.guided.34, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pN55391)	100	560 / 560	DAQEMC010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00035698 SAMN37819730-rid19805163.denovo.20, whole genome shotgun sequence	68823..69382																																																						avrA	DAQEMC010000004.1	138900..139769	99.195	870	0						
GCA_032696045.1_PDT001940078.1_genomic.fna	Salmonella_enterica	0.5229	113.562 KB	15	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQELZ010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027800 SAMN37819635-rid19806463.denovo.07, whole genome shotgun sequence	76160..76597	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQELZ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027800 SAMN37819635-rid19806463.guided.33, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQELZ010000003.1	103995..104864	99.77	870	0						
GCA_032696065.1_PDT001940046.1_genomic.fna	Salmonella_enterica	0.5223	171.014 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEMA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00038264 SAMN37819750-rid19806443.denovo.01, whole genome shotgun sequence	570986..571423	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEMA010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00038264 SAMN37819750-rid19806443.guided.25, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEMA010000005.1	149646..150515	99.655	870	0						
GCA_032696085.1_PDT001940001.1_genomic.fna	Salmonella_enterica	0.5219	67.295 KB	25	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEMF010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046497 SAMN37819964-rid19806433.denovo.027, whole genome shotgun sequence	13050..13487	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEMF010000137.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046497 SAMN37819964-rid19806433.guided.077, whole genome shotgun sequence	7501..7938	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEMF010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046497 SAMN37819964-rid19806433.denovo.011, whole genome shotgun sequence	48447..49089	enterobacteriales	IncFII(S)	100	262 / 262	DAQEMF010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046497 SAMN37819964-rid19806433.denovo.011, whole genome shotgun sequence	64174..64435																																																avrA	DAQEMF010000007.1	107917..108786	99.885	870	0						
GCA_032696105.1_PDT001940021.1_genomic.fna	Salmonella_enterica	0.522	88.018 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEME010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045579 SAMN37819859-rid19805153.denovo.003, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEME010000105.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045579 SAMN37819859-rid19805153.guided.034, whole genome shotgun sequence	37918..38355	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEME010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045579 SAMN37819859-rid19805153.denovo.013, whole genome shotgun sequence	48426..49068	enterobacteriales	IncFII(S)	100	262 / 262	DAQEME010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045579 SAMN37819859-rid19805153.denovo.013, whole genome shotgun sequence	64153..64414																																																avrA	DAQEME010000006.1	107919..108788	99.885	870	0						
GCA_032696125.1_PDT001939960.1_genomic.fna	Salmonella_enterica	0.5209	243.471 KB	6	aroC_454,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	1925	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_454	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEMB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023526 SAMN37819566-rid19793173.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEMB010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023526 SAMN37819566-rid19793173.guided.17, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEMB010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023526 SAMN37819566-rid19793173.denovo.23, whole genome shotgun sequence	48112..48754	enterobacteriales	IncFII(S)	100	262 / 262	DAQEMB010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023526 SAMN37819566-rid19793173.denovo.23, whole genome shotgun sequence	3859..4120																																																avrA	DAQEMB010000002.1	140958..141827	99.54	870	0						
GCA_032696145.1_PDT001939981.1_genomic.fna	Salmonella_enterica	0.522	80.778 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEMD010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046734 SAMN37819982-rid19807743.denovo.009, whole genome shotgun sequence	56332..56769	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEMD010000125.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046734 SAMN37819982-rid19807743.guided.012, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEMD010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046734 SAMN37819982-rid19807743.denovo.102, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEMD010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046734 SAMN37819982-rid19807743.denovo.013, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	DAQEMD010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046734 SAMN37819982-rid19807743.denovo.013, whole genome shotgun sequence	30407..30668																																									avrA	DAQEMD010000008.1	99938..100807	99.885	870	0						
GCA_032696165.1_PDT001939991.1_genomic.fna	Salmonella_enterica	0.5223	79.943 KB	22	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEMH010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046673 SAMN37819973-rid19806423.denovo.060, whole genome shotgun sequence	11343..11780	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEMH010000128.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046673 SAMN37819973-rid19806423.guided.055, whole genome shotgun sequence	15504..15941	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEMH010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046673 SAMN37819973-rid19806423.denovo.010, whole genome shotgun sequence	44663..45305	enterobacteriales	IncFII(S)	100	262 / 262	DAQEMH010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046673 SAMN37819973-rid19806423.denovo.010, whole genome shotgun sequence	60390..60651																																																avrA	DAQEMH010000003.1	107920..108789	99.885	870	0						
GCA_032696185.1_PDT001939956.1_genomic.fna	Salmonella_enterica	0.5214	179.177 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEMG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048970 SAMN37820091-rid19803793.denovo.01, whole genome shotgun sequence	207028..207465	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEMG010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048970 SAMN37820091-rid19803793.guided.13, whole genome shotgun sequence	24984..25421	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEMG010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048970 SAMN37820091-rid19803793.denovo.15, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQEMG010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048970 SAMN37820091-rid19803793.denovo.15, whole genome shotgun sequence	60371..60632																																																avrA	DAQEMG010000007.1	122757..123626	99.885	870	0						
GCA_032696205.1_PDT001939946.1_genomic.fna	Salmonella_enterica	0.5204	130.956 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEMJ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027884 SAMN37819638-rid19802463.denovo.02, whole genome shotgun sequence	52276..52713	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEMJ010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027884 SAMN37819638-rid19802463.guided.27, whole genome shotgun sequence	9845..10282	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEMJ010000004.1	124376..125245	99.77	870	0						
GCA_032696225.1_PDT001939950.1_genomic.fna	Salmonella_enterica	0.5212	166.263 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEMI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048989 SAMN37820097-rid19794293.denovo.01, whole genome shotgun sequence	207028..207465	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEMI010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048989 SAMN37820097-rid19794293.guided.13, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEMI010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048989 SAMN37820097-rid19794293.denovo.16, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQEMI010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048989 SAMN37820097-rid19794293.denovo.16, whole genome shotgun sequence	60371..60632																																																avrA	DAQEMI010000006.1	123378..124247	99.885	870	0						
GCA_032696245.1_PDT001939940.1_genomic.fna	Salmonella_enterica	0.5213	96.623 KB	15	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEMK010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028345 SAMN37819644-rid19799323.denovo.19, whole genome shotgun sequence	36868..37305	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEMK010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028345 SAMN37819644-rid19799323.guided.31, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEMK010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028345 SAMN37819644-rid19799323.denovo.74, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEMK010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028345 SAMN37819644-rid19799323.denovo.32, whole genome shotgun sequence	40532..41174		enterobacteriales	IncFII(S)	100	262 / 262	DAQEMK010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028345 SAMN37819644-rid19799323.denovo.32, whole genome shotgun sequence	55557..55818																																									avrA	DAQEMK010000005.1	115374..116243	99.54	870	0						
GCA_032696265.1_PDT001939934.1_genomic.fna	Salmonella_enterica	0.5212	149.885 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEML010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028364 SAMN37819649-rid19805143.denovo.02, whole genome shotgun sequence	73463..73900	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEML010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028364 SAMN37819649-rid19805143.guided.29, whole genome shotgun sequence	34195..34632	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEML010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028364 SAMN37819649-rid19805143.denovo.32, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQEML010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028364 SAMN37819649-rid19805143.denovo.56, whole genome shotgun sequence	3423..3684																																																avrA	DAQEML010000005.1	115379..116248	99.54	870	0						
GCA_032696285.1_PDT001939920.1_genomic.fna	Salmonella_enterica	0.5203	185.734 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEMM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028420 SAMN37819662-rid19799313.denovo.01, whole genome shotgun sequence	232642..233079	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEMM010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028420 SAMN37819662-rid19799313.guided.27, whole genome shotgun sequence	24599..25036	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEMM010000006.1	124073..124942	99.77	870	0						
GCA_032696305.1_PDT001939910.1_genomic.fna	Salmonella_enterica	0.5209	167.01 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEMN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022098 SAMN37819533-rid19799303.denovo.01, whole genome shotgun sequence	292140..292577	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEMN010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022098 SAMN37819533-rid19799303.guided.37, whole genome shotgun sequence	14018..14455	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	DAQEMN010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022098 SAMN37819533-rid19799303.denovo.55, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQEMN010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022098 SAMN37819533-rid19799303.guided.56, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEMN010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022098 SAMN37819533-rid19799303.denovo.27, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	DAQEMN010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022098 SAMN37819533-rid19799303.denovo.47, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	95.76	377 / 377	DAQEMN010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022098 SAMN37819533-rid19799303.denovo.50, whole genome shotgun sequence	4749..5125																																									avrA	DAQEMN010000007.1	140720..141589	99.54	870	0						
GCA_032696325.1_PDT001939894.1_genomic.fna	Salmonella_enterica	0.5216	140.59 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEMO010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040822 SAMN37819772-rid19806403.denovo.05, whole genome shotgun sequence	17246..17683	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEMO010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040822 SAMN37819772-rid19806403.guided.45, whole genome shotgun sequence	2195..2632	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEMO010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040822 SAMN37819772-rid19806403.denovo.32, whole genome shotgun sequence	35840..36482	enterobacteriales	IncFII(S)	100	262 / 262	DAQEMO010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040822 SAMN37819772-rid19806403.denovo.51, whole genome shotgun sequence	3414..3675																																																avrA	DAQEMO010000004.1	115366..116235	99.54	870	0						
GCA_032696345.1_PDT001939888.1_genomic.fna	Salmonella_enterica	0.5214	152.963 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEMP010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022120 SAMN37819535-rid19801123.denovo.02, whole genome shotgun sequence	17235..17672	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEMP010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022120 SAMN37819535-rid19801123.guided.26, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEMP010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022120 SAMN37819535-rid19801123.denovo.31, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQEMP010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022120 SAMN37819535-rid19801123.denovo.51, whole genome shotgun sequence	3423..3684																																																avrA	DAQEMP010000010.1	140720..141589	99.54	870	0						
GCA_032696365.1_PDT001939885.1_genomic.fna	Salmonella_enterica	0.5227	201.53 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEMQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041087 SAMN37819780-rid19793163.denovo.01, whole genome shotgun sequence	573925..574362	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEMQ010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041087 SAMN37819780-rid19793163.guided.25, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEMQ010000004.1	95044..95913	99.77	870	0						
GCA_032696385.1_PDT001939871.1_genomic.fna	Salmonella_enterica	0.5209	195.685 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEMS010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045721 SAMN37819879-rid19801093.denovo.11, whole genome shotgun sequence	16087..16524	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEMS010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045721 SAMN37819879-rid19801093.guided.21, whole genome shotgun sequence	34210..34647	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEMS010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045721 SAMN37819879-rid19801093.denovo.50, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEMS010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045721 SAMN37819879-rid19801093.denovo.28, whole genome shotgun sequence	35190..35832		enterobacteriales	IncFII(S)	100	262 / 262	DAQEMS010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045721 SAMN37819879-rid19801093.denovo.28, whole genome shotgun sequence	50215..50476																																									avrA	DAQEMS010000006.1	115372..116241	99.54	870	0						
GCA_032696405.1_PDT001939881.1_genomic.fna	Salmonella_enterica	0.5222	152.104 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEMR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00045703 SAMN37819870-rid19801103.denovo.01, whole genome shotgun sequence	383947..384384	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEMR010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00045703 SAMN37819870-rid19801103.guided.34, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEMR010000004.1	124129..124998	99.77	870	0						
GCA_032696415.1_PDT001939843.1_genomic.fna	Salmonella_enterica	0.5217	90.26 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEMT010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046764 SAMN37819991-rid19799283.denovo.05, whole genome shotgun sequence	133799..134236	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEMT010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046764 SAMN37819991-rid19799283.guided.46, whole genome shotgun sequence	14540..14977	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEMT010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046764 SAMN37819991-rid19799283.denovo.14, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQEMT010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046764 SAMN37819991-rid19799283.denovo.14, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEMT010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046764 SAMN37819991-rid19799283.denovo.17, whole genome shotgun sequence	15833..15969																																									avrA	DAQEMT010000013.1	94133..95002	99.885	870	0						
GCA_032696445.1_PDT001939833.1_genomic.fna	Salmonella_enterica	0.5231	71.036 KB	19	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQEMU010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00046855 SAMN37820000-rid19799273.denovo.021, whole genome shotgun sequence	11315..11752	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQEMU010000115.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00046855 SAMN37820000-rid19799273.guided.062, whole genome shotgun sequence	14096..14533	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEMU010000020.1	61552..62421	98.966	870	0						
GCA_032696465.1_PDT001939831.1_genomic.fna	Salmonella_enterica	0.5222	105.085 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEMV010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046907 SAMN37820002-rid19801053.denovo.15, whole genome shotgun sequence	12565..13002	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEMV010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046907 SAMN37820002-rid19801053.guided.60, whole genome shotgun sequence	8988..9425	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEMV010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046907 SAMN37820002-rid19801053.denovo.18, whole genome shotgun sequence	48418..49060	enterobacteriales	IncFII(S)	100	262 / 262	DAQEMV010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046907 SAMN37820002-rid19801053.denovo.18, whole genome shotgun sequence	64145..64406																																																avrA	DAQEMV010000012.1	108388..109257	99.885	870	0						
GCA_032696485.1_PDT001939784.1_genomic.fna	Salmonella_enterica	0.5212	117.824 KB	13	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEMX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028465 SAMN37819669-rid19801013.denovo.01, whole genome shotgun sequence	44035..44472	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEMX010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028465 SAMN37819669-rid19801013.guided.30, whole genome shotgun sequence	34927..35364	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEMX010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028465 SAMN37819669-rid19801013.denovo.69, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEMX010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028465 SAMN37819669-rid19801013.denovo.29, whole genome shotgun sequence	40527..41169		enterobacteriales	IncFII(S)	100	262 / 262	DAQEMX010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028465 SAMN37819669-rid19801013.denovo.29, whole genome shotgun sequence	55552..55813																																									avrA	DAQEMX010000005.1	115337..116206	99.54	870	0						
GCA_032696505.1_PDT001939792.1_genomic.fna	Salmonella_enterica	0.5215	111.407 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEMW010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049532 SAMN37820123-rid19803733.denovo.004, whole genome shotgun sequence	206854..207291	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEMW010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049532 SAMN37820123-rid19803733.guided.015, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQEMW010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049532 SAMN37820123-rid19803733.denovo.079, whole genome shotgun sequence	3709..3839	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEMW010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049532 SAMN37820123-rid19803733.denovo.016, whole genome shotgun sequence	48445..49087		enterobacteriales	IncFII(S)	100	262 / 262	DAQEMW010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049532 SAMN37820123-rid19803733.denovo.016, whole genome shotgun sequence	64172..64433																																									avrA	DAQEMW010000013.1	108281..109150	99.885	870	0						
GCA_032696565.1_PDT001934969.1_genomic.fna	Salmonella_enterica	0.5208	143.438 KB	13	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNVLA010000008.1 Salmonella enterica strain PNUSAS391273 SAMN37813377-rid19787453.denovo.08, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNVLA010000069.1 Salmonella enterica strain PNUSAS391273 SAMN37813377-rid19787453.guided.58, whole genome shotgun sequence	574..1008	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032696585.1_PDT001934967.1_genomic.fna	Salmonella_enterica	0.5214	227.725 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVLC010000001.1 Salmonella enterica strain PNUSAS391266 SAMN37813371-rid19787433.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVLC010000045.1 Salmonella enterica strain PNUSAS391266 SAMN37813371-rid19787433.guided.40, whole genome shotgun sequence	771..1208	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVLC010000030.1 Salmonella enterica strain PNUSAS391266 SAMN37813371-rid19787433.denovo.30, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNVLC010000035.1 Salmonella enterica strain PNUSAS391266 SAMN37813371-rid19787433.denovo.35, whole genome shotgun sequence	3402..3663																																																avrA	ABNVLC010000006.1	174850..175719	99.54	870	0						
GCA_032696605.1_PDT001940133.1_genomic.fna	Salmonella_enterica	0.5216	159.021 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEMY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00024902 SAMN37819587-rid19806473.denovo.01, whole genome shotgun sequence	477859..478296	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEMY010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00024902 SAMN37819587-rid19806473.guided.11, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEMY010000004.1	123988..124857	99.77	870	0						
GCA_032696625.1_PDT001940058.1_genomic.fna	Salmonella_enterica	0.5211	140.581 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEMZ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036920 SAMN37819739-rid19806453.denovo.06, whole genome shotgun sequence	53565..54002	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEMZ010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036920 SAMN37819739-rid19806453.guided.20, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEMZ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036920 SAMN37819739-rid19806453.denovo.34, whole genome shotgun sequence	40537..41179	enterobacteriales	IncFII(S)	100	262 / 262	DAQEMZ010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036920 SAMN37819739-rid19806453.denovo.55, whole genome shotgun sequence	3414..3675																																																avrA	DAQEMZ010000005.1	140715..141584	99.54	870	0						
GCA_032696645.1_PDT001939928.1_genomic.fna	Salmonella_enterica	0.5218	91.025 KB	17	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQENA010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028389 SAMN37819655-rid19801153.denovo.002, whole genome shotgun sequence	17274..17711	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQENA010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028389 SAMN37819655-rid19801153.guided.053, whole genome shotgun sequence	14299..14736	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQENA010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028389 SAMN37819655-rid19801153.denovo.089, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQENA010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028389 SAMN37819655-rid19801153.denovo.051, whole genome shotgun sequence	18059..18701		enterobacteriales	IncFII(S)	100	262 / 262	DAQENA010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028389 SAMN37819655-rid19801153.denovo.051, whole genome shotgun sequence	3415..3676																																									avrA	DAQENA010000004.1	115307..116176	99.54	870	0						
GCA_032696665.1_PDT001939924.1_genomic.fna	Salmonella_enterica	0.5216	90.902 KB	15	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQENB010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028397 SAMN37819658-rid19805123.denovo.003, whole genome shotgun sequence	14069..14506	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQENB010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028397 SAMN37819658-rid19805123.guided.067, whole genome shotgun sequence	5567..6004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQENB010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028397 SAMN37819658-rid19805123.denovo.077, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQENB010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028397 SAMN37819658-rid19805123.denovo.029, whole genome shotgun sequence	35855..36497		enterobacteriales	IncFII(S)	100	262 / 262	DAQENB010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028397 SAMN37819658-rid19805123.denovo.029, whole genome shotgun sequence	50880..51141																																									avrA	DAQENB010000037.1	43658..44527	99.54	870	0						
GCA_032696685.1_PDT001934968.1_genomic.fna	Salmonella_enterica	0.5207	115.032 KB	14	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNVLB010000005.1 Salmonella enterica strain PNUSAS391267 SAMN37813370-rid19787443.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNVLB010000071.1 Salmonella enterica strain PNUSAS391267 SAMN37813370-rid19787443.guided.53, whole genome shotgun sequence	2835..3269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032696705.1_PDT001939914.1_genomic.fna	Salmonella_enterica	0.5218	171.072 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEND010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00038624 SAMN37819754-rid19806413.denovo.01, whole genome shotgun sequence	302674..303111	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEND010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00038624 SAMN37819754-rid19806413.guided.27, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEND010000003.1	149923..150792	99.655	870	0						
GCA_032696725.1_PDT001939916.1_genomic.fna	Salmonella_enterica	0.5215	136.511 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQENC010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028454 SAMN37819666-rid19805113.denovo.08, whole genome shotgun sequence	17236..17673	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQENC010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028454 SAMN37819666-rid19805113.guided.39, whole genome shotgun sequence	14732..15169	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQENC010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028454 SAMN37819666-rid19805113.denovo.59, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQENC010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028454 SAMN37819666-rid19805113.denovo.28, whole genome shotgun sequence	35846..36488		enterobacteriales	IncFII(S)	100	262 / 262	DAQENC010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028454 SAMN37819666-rid19805113.denovo.28, whole genome shotgun sequence	50871..51132																																									avrA	DAQENC010000005.1	140958..141827	99.54	870	0						
GCA_032696745.1_PDT001939904.1_genomic.fna	Salmonella_enterica	0.5211	96.888 KB	16	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncFII(pCTU2),pESA2	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQENE010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040180 SAMN37819763-rid19807723.denovo.02, whole genome shotgun sequence	62406..62843	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQENE010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040180 SAMN37819763-rid19807723.guided.56, whole genome shotgun sequence	4912..5349	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQENE010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040180 SAMN37819763-rid19807723.denovo.35, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQENE010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040180 SAMN37819763-rid19807723.denovo.67, whole genome shotgun sequence	3420..3681		enterobacteriales	IncFII(pCTU2)	97.23	577 / 577	DAQENE010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040180 SAMN37819763-rid19807723.denovo.54, whole genome shotgun sequence	4742..5318		enterobacteriales	pESA2	98.4	750 / 750	DAQENE010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040180 SAMN37819763-rid19807723.denovo.54, whole genome shotgun sequence	21137..21886																																		avrA	DAQENE010000005.1	81622..82491	99.54	870	0						
GCA_032696785.1_PDT001939849.1_genomic.fna	Salmonella_enterica	0.5213	93.84 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQENF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046744 SAMN37819986-rid19803753.denovo.01, whole genome shotgun sequence	52529..52966	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQENF010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046744 SAMN37819986-rid19803753.guided.29, whole genome shotgun sequence	7359..7796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQENF010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046744 SAMN37819986-rid19803753.denovo.15, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQENF010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046744 SAMN37819986-rid19803753.denovo.15, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQENF010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046744 SAMN37819986-rid19803753.denovo.44, whole genome shotgun sequence	22488..22624																																									avrA	DAQENF010000005.1	108280..109149	99.885	870	0						
GCA_032696805.1_PDT001939782.1_genomic.fna	Salmonella_enterica	0.5211	186.178 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQENH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028604 SAMN37819671-rid19803723.denovo.01, whole genome shotgun sequence	151873..152310	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQENH010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028604 SAMN37819671-rid19803723.guided.29, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQENH010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028604 SAMN37819671-rid19803723.denovo.47, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQENH010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028604 SAMN37819671-rid19803723.denovo.27, whole genome shotgun sequence	40532..41174		enterobacteriales	IncFII(S)	100	262 / 262	DAQENH010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028604 SAMN37819671-rid19803723.denovo.27, whole genome shotgun sequence	55557..55818																																									avrA	DAQENH010000007.1	115435..116304	99.54	870	0						
GCA_032696825.1_PDT001934964.1_genomic.fna	Salmonella_enterica	0.5205	249.344 KB	6	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_19,thrA_12	582	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVLE010000001.1 Salmonella enterica strain PNUSAS391274 SAMN37813376-rid19787403.denovo.01, whole genome shotgun sequence	479176..479613	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVLE010000044.1 Salmonella enterica strain PNUSAS391274 SAMN37813376-rid19787403.guided.33, whole genome shotgun sequence	3455..3892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.81	113 / 114	ABNVLE010000034.1 Salmonella enterica strain PNUSAS391274 SAMN37813376-rid19787403.denovo.36, whole genome shotgun sequence	2528..2639	enterobacteriales	ColpVC	98.96	193 / 193	ABNVLE010000037.1 Salmonella enterica strain PNUSAS391274 SAMN37813376-rid19787403.denovo.39, whole genome shotgun sequence	805..997																																																avrA	ABNVLE010000007.1	39545..40414	99.54	870	0						
GCA_032696845.1_PDT001939829.1_genomic.fna	Salmonella_enterica	0.5218	90.402 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQENG010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046909 SAMN37820004-rid19807713.denovo.033, whole genome shotgun sequence	12516..12953	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQENG010000118.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046909 SAMN37820004-rid19807713.guided.079, whole genome shotgun sequence	3230..3667	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQENG010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046909 SAMN37820004-rid19807713.denovo.018, whole genome shotgun sequence	48418..49060	enterobacteriales	IncFII(S)	100	262 / 262	DAQENG010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046909 SAMN37820004-rid19807713.denovo.018, whole genome shotgun sequence	64145..64406		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQENG010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046909 SAMN37820004-rid19807713.denovo.046, whole genome shotgun sequence	22488..22624																																									avrA	DAQENG010000006.1	39625..40494	99.885	870	0						
GCA_032696865.1_PDT001934966.1_genomic.fna	Salmonella_enterica	0.5208	215.724 KB	8	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVLD010000001.1 Salmonella enterica strain PNUSAS391275 SAMN37813375-rid19787423.denovo.01, whole genome shotgun sequence	383528..383965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.59	427/438	ABNVLD010000058.1 Salmonella enterica strain PNUSAS391275 SAMN37813375-rid19787423.guided.48, whole genome shotgun sequence	1..427	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVLD010000023.1	39501..40371	99.196	871	0						
GCA_032696885.1_PDT001934963.1_genomic.fna	Salmonella_enterica	0.5205	188.743 KB	7	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVLF010000001.1 Salmonella enterica strain PNUSAS391268 SAMN37813369-rid19787393.denovo.01, whole genome shotgun sequence	576376..576813	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVLF010000060.1 Salmonella enterica strain PNUSAS391268 SAMN37813369-rid19787393.guided.40, whole genome shotgun sequence	482..919	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVLF010000007.1	150780..151650	99.196	871	0						
GCA_032696905.1_PDT001934962.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVLG010000001.1 Salmonella enterica strain PNUSAS391269 SAMN37813368-rid19787383.denovo.01, whole genome shotgun sequence	770175..770612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVLG010000028.1 Salmonella enterica strain PNUSAS391269 SAMN37813368-rid19787383.guided.23, whole genome shotgun sequence	857..1294	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVLG010000017.1 Salmonella enterica strain PNUSAS391269 SAMN37813368-rid19787383.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNVLG010000018.1 Salmonella enterica strain PNUSAS391269 SAMN37813368-rid19787383.denovo.19, whole genome shotgun sequence	3392..3653																																																avrA	ABNVLG010000002.1	553643..554512	99.54	870	0						
GCA_032696925.1_PDT001934961.1_genomic.fna	Salmonella_enterica	0.5207	215.722 KB	7	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVLH010000001.1 Salmonella enterica strain PNUSAS391271 SAMN37813373-rid19787373.denovo.01, whole genome shotgun sequence	383529..383966	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.79	413/438	ABNVLH010000060.1 Salmonella enterica strain PNUSAS391271 SAMN37813373-rid19787373.guided.38, whole genome shotgun sequence	1..413	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVLH010000009.1	150665..151535	99.196	871	0						
GCA_032696965.1_PDT001934960.1_genomic.fna	Salmonella_enterica	0.5218	419.284 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVLI010000001.1 Salmonella enterica strain PNUSAS391270 SAMN37813374-rid19787363.denovo.01, whole genome shotgun sequence	612210..612647	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVLI010000026.1 Salmonella enterica strain PNUSAS391270 SAMN37813374-rid19787363.guided.21, whole genome shotgun sequence	6141..6578	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVLI010000002.1	174562..175431	98.966	870	0						
GCA_032697165.1_PDT001930781.1_genomic.fna	Salmonella_enterica	0.5219	397.161 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVLV010000002.1 Salmonella enterica strain PNUSAS391263 SAMN37810505-rid19745873.denovo.02, whole genome shotgun sequence	173877..174314	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVLV010000036.1 Salmonella enterica strain PNUSAS391263 SAMN37810505-rid19745873.guided.20, whole genome shotgun sequence	10804..11241	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVLV010000007.1	94005..94874	98.966	870	0						
GCA_032697225.1_PDT001930779.1_genomic.fna	Salmonella_enterica	0.522	333.412 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVLX010000002.1 Salmonella enterica strain PNUSAS391265 SAMN37810507-rid19745853.denovo.02, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVLX010000031.1 Salmonella enterica strain PNUSAS391265 SAMN37810507-rid19745853.guided.17, whole genome shotgun sequence	1345..1782	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVLX010000006.1	129887..130756	98.966	870	0						
GCA_032697245.1_PDT001930780.1_genomic.fna	Salmonella_enterica	0.5213	406.003 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVLW010000001.1 Salmonella enterica strain PNUSAS391264 SAMN37810506-rid19745863.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVLW010000029.1 Salmonella enterica strain PNUSAS391264 SAMN37810506-rid19745863.guided.20, whole genome shotgun sequence	18793..19230	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVLW010000016.1 Salmonella enterica strain PNUSAS391264 SAMN37810506-rid19745863.denovo.17, whole genome shotgun sequence	40562..41204	enterobacteriales	IncFII(S)	100	262 / 262	ABNVLW010000019.1 Salmonella enterica strain PNUSAS391264 SAMN37810506-rid19745863.denovo.22, whole genome shotgun sequence	3392..3653																																																avrA	ABNVLW010000002.1	553076..553945	99.54	870	0						
GCA_032697265.1_PDT001930777.1_genomic.fna	Salmonella_enterica	0.5234	108.003 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVLZ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310388 SAMN37810078-rid19742103.denovo.01, whole genome shotgun sequence	275930..276367	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVLZ010000073.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310388 SAMN37810078-rid19742103.guided.48, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVLZ010000014.1	62098..62967	99.655	870	0						
GCA_032697285.1_PDT001930778.1_genomic.fna	Salmonella_enterica	0.5197	88.161 KB	20	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVLY010000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310390 SAMN37810080-rid19742963.denovo.008, whole genome shotgun sequence	85827..86264	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVLY010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310390 SAMN37810080-rid19742963.denovo.087, whole genome shotgun sequence	5797..6633	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVLY010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310390 SAMN37810080-rid19742963.denovo.087, whole genome shotgun sequence	6633..7435	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVLY010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310390 SAMN37810080-rid19742963.denovo.087, whole genome shotgun sequence	6633..7436	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVLY010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310390 SAMN37810080-rid19742963.denovo.087, whole genome shotgun sequence	6633..7436	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVLY010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310390 SAMN37810080-rid19742963.denovo.087, whole genome shotgun sequence	6633..7436	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNVLY010000165.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310390 SAMN37810080-rid19742963.guided.086, whole genome shotgun sequence	2795..3631	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVLY010000165.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310390 SAMN37810080-rid19742963.guided.086, whole genome shotgun sequence	1993..2795	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVLY010000165.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310390 SAMN37810080-rid19742963.guided.086, whole genome shotgun sequence	1992..2795	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVLY010000165.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310390 SAMN37810080-rid19742963.guided.086, whole genome shotgun sequence	1992..2795	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVLY010000165.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310390 SAMN37810080-rid19742963.guided.086, whole genome shotgun sequence	1992..2795	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNVLY010000166.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310390 SAMN37810080-rid19742963.guided.091, whole genome shotgun sequence	7390..7827	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNVLY010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310390 SAMN37810080-rid19742963.denovo.075, whole genome shotgun sequence	10255..10581	enterobacteriales	IncHI2A	99.37	630 / 630	ABNVLY010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310390 SAMN37810080-rid19742963.denovo.100, whole genome shotgun sequence	951..1580		enterobacteriales	IncX1	100	373 / 373	ABNVLY010000132.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310390 SAMN37810080-rid19742963.denovo.137, whole genome shotgun sequence	1154..1526																																									avrA	ABNVLY010000034.1	39484..40353	99.655	870	0						
GCA_032697305.1_PDT001930776.1_genomic.fna	Salmonella_enterica	0.5213	107.887 KB	17	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX4	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVMA010000006.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310389 SAMN37810079-rid19742953.denovo.006, whole genome shotgun sequence	21821..22258	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVMA010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310389 SAMN37810079-rid19742953.denovo.056, whole genome shotgun sequence	18454..19245	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVMA010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310389 SAMN37810079-rid19742953.denovo.056, whole genome shotgun sequence	18454..19245	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNVMA010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310389 SAMN37810079-rid19742953.guided.045, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVMA010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310389 SAMN37810079-rid19742953.guided.057, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVMA010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310389 SAMN37810079-rid19742953.guided.057, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNVMA010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310389 SAMN37810079-rid19742953.denovo.056, whole genome shotgun sequence	17110..17949	Sulfamethoxazole	U12338	sul1	100	840/840	ABNVMA010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310389 SAMN37810079-rid19742953.guided.057, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNVMA010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310389 SAMN37810079-rid19742953.denovo.056, whole genome shotgun sequence	3394..4593	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVMA010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310389 SAMN37810079-rid19742953.guided.057, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVMA010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310389 SAMN37810079-rid19742953.denovo.066, whole genome shotgun sequence	10191..10750	enterobacteriales	IncX4	100	712 / 712	ABNVMA010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310389 SAMN37810079-rid19742953.denovo.100, whole genome shotgun sequence	730..1441																																																avrA	ABNVMA010000004.1	149828..150697	99.655	870	0						
GCA_032697345.1_PDT001930775.1_genomic.fna	Salmonella_enterica	0.5215	145.566 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVMB010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310391 SAMN37810076-rid19744343.denovo.03, whole genome shotgun sequence	175678..176115	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVMB010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310391 SAMN37810076-rid19744343.guided.29, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVMB010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310391 SAMN37810076-rid19744343.denovo.65, whole genome shotgun sequence	2507..3066																																																						avrA	ABNVMB010000009.1	94085..94954	99.655	870	0						
GCA_032697365.1_PDT001930772.1_genomic.fna	Salmonella_enterica	0.518	88.279 KB	16	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVME010000031.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310386 SAMN37810058-rid19742093.denovo.031, whole genome shotgun sequence	1025..1462	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVME010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310386 SAMN37810058-rid19742093.denovo.049, whole genome shotgun sequence	3115..3951	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVME010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310386 SAMN37810058-rid19742093.denovo.049, whole genome shotgun sequence	2313..3115	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVME010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310386 SAMN37810058-rid19742093.denovo.049, whole genome shotgun sequence	2312..3115	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVME010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310386 SAMN37810058-rid19742093.denovo.049, whole genome shotgun sequence	2312..3115	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVME010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310386 SAMN37810058-rid19742093.denovo.049, whole genome shotgun sequence	2312..3115	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNVME010000140.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310386 SAMN37810058-rid19742093.guided.060, whole genome shotgun sequence	2356..3192	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVME010000140.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310386 SAMN37810058-rid19742093.guided.060, whole genome shotgun sequence	1554..2356	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVME010000140.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310386 SAMN37810058-rid19742093.guided.060, whole genome shotgun sequence	1553..2356	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVME010000140.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310386 SAMN37810058-rid19742093.guided.060, whole genome shotgun sequence	1553..2356	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVME010000140.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310386 SAMN37810058-rid19742093.guided.060, whole genome shotgun sequence	1553..2356	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNVME010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310386 SAMN37810058-rid19742093.guided.076, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNVME010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310386 SAMN37810058-rid19742093.denovo.032, whole genome shotgun sequence	28959..29285	enterobacteriales	IncHI2A	99.52	630 / 630	ABNVME010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310386 SAMN37810058-rid19742093.denovo.032, whole genome shotgun sequence	47269..47898		enterobacteriales	IncX1	100	373 / 373	ABNVME010000103.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310386 SAMN37810058-rid19742093.denovo.107, whole genome shotgun sequence	2218..2590																																									avrA	ABNVME010000036.1	39489..40358	99.655	870	0						
GCA_032697385.1_PDT001930771.1_genomic.fna	Salmonella_enterica	0.5219	110.153 KB	13	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVMF010000003.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310381 SAMN37810061-rid19744323.denovo.03, whole genome shotgun sequence	146196..146633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVMF010000086.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310381 SAMN37810061-rid19744323.guided.55, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNVMF010000067.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310381 SAMN37810061-rid19744323.denovo.70, whole genome shotgun sequence	218..359																																																						avrA	ABNVMF010000009.1	139943..140812	99.425	870	0						
GCA_032697405.1_PDT001930769.1_genomic.fna	Salmonella_enterica	0.5212	86.774 KB	18	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:g,m,s:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	g,m,s	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVMH010000032.1 Salmonella enterica subsp. enterica serovar Lubbock strain FSIS32310382 SAMN37810060-rid19742933.denovo.032, whole genome shotgun sequence	52239..52676	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVMH010000103.1 Salmonella enterica subsp. enterica serovar Lubbock strain FSIS32310382 SAMN37810060-rid19742933.guided.054, whole genome shotgun sequence	14113..14550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNVMH010000042.1 Salmonella enterica subsp. enterica serovar Lubbock strain FSIS32310382 SAMN37810060-rid19742933.denovo.042, whole genome shotgun sequence	27645..27786																																																						avrA	ABNVMH010000001.1	106841..107710	99.195	870	0						
GCA_032697425.1_PDT001930770.1_genomic.fna	Salmonella_enterica	0.5225	58.143 KB	26	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVMG010000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310385 SAMN37810057-rid19744313.denovo.022, whole genome shotgun sequence	11392..11829	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVMG010000164.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310385 SAMN37810057-rid19744313.guided.079, whole genome shotgun sequence	8945..9382	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNVMG010000023.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310385 SAMN37810057-rid19744313.denovo.023, whole genome shotgun sequence	21682..22497	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNVMG010000163.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310385 SAMN37810057-rid19744313.guided.043, whole genome shotgun sequence	21723..22538	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNVMG010000023.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310385 SAMN37810057-rid19744313.denovo.023, whole genome shotgun sequence	24674..25873	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVMG010000163.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310385 SAMN37810057-rid19744313.guided.043, whole genome shotgun sequence	24715..25914	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNVMG010000123.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310385 SAMN37810057-rid19744313.denovo.127, whole genome shotgun sequence	371..501																																																						avrA	ABNVMG010000015.1	83889..84758	99.885	870	0						
GCA_032697445.1_PDT001930773.1_genomic.fna	Salmonella_enterica	0.5222	94.129 KB	17	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVMD010000005.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310384 SAMN37810056-rid19744333.denovo.005, whole genome shotgun sequence	175508..175945	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVMD010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310384 SAMN37810056-rid19744333.denovo.055, whole genome shotgun sequence	18454..19245	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVMD010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310384 SAMN37810056-rid19744333.denovo.055, whole genome shotgun sequence	18454..19245	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNVMD010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310384 SAMN37810056-rid19744333.guided.057, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVMD010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310384 SAMN37810056-rid19744333.guided.058, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVMD010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310384 SAMN37810056-rid19744333.guided.058, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	floR	98.19	1214/1215	ABNVMD010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310384 SAMN37810056-rid19744333.denovo.080, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNVMD010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310384 SAMN37810056-rid19744333.guided.079, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNVMD010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310384 SAMN37810056-rid19744333.denovo.055, whole genome shotgun sequence	17110..17949	Sulfamethoxazole	U12338	sul1	100	840/840	ABNVMD010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310384 SAMN37810056-rid19744333.guided.058, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNVMD010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310384 SAMN37810056-rid19744333.denovo.055, whole genome shotgun sequence	3394..4593	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVMD010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310384 SAMN37810056-rid19744333.guided.058, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVMD010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310384 SAMN37810056-rid19744333.denovo.065, whole genome shotgun sequence	14638..15197																																																						avrA	ABNVMD010000002.1	149560..150429	99.655	870	0						
GCA_032697465.1_PDT001930768.1_genomic.fna	Salmonella_enterica	0.522	95.107 KB	16	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVMI010000017.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310387 SAMN37810059-rid19742923.denovo.017, whole genome shotgun sequence	16084..16521	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVMI010000109.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310387 SAMN37810059-rid19742923.guided.052, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVMI010000072.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310387 SAMN37810059-rid19742923.denovo.074, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNVMI010000080.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310387 SAMN37810059-rid19742923.denovo.082, whole genome shotgun sequence	3366..3627																																																avrA	ABNVMI010000008.1	61525..62394	99.54	870	0						
GCA_032697485.1_PDT001930767.1_genomic.fna	Salmonella_enterica	0.522	96.997 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVMJ010000023.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310383 SAMN37810055-rid19742083.denovo.23, whole genome shotgun sequence	15508..15945	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVMJ010000090.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310383 SAMN37810055-rid19742083.guided.72, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNVMJ010000027.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310383 SAMN37810055-rid19742083.denovo.27, whole genome shotgun sequence	29053..29868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNVMJ010000088.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310383 SAMN37810055-rid19742083.guided.66, whole genome shotgun sequence	3114..3929	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNVMJ010000027.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310383 SAMN37810055-rid19742083.denovo.27, whole genome shotgun sequence	32045..33244	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVMJ010000088.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310383 SAMN37810055-rid19742083.guided.66, whole genome shotgun sequence	6106..7305	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNVMJ010000077.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310383 SAMN37810055-rid19742083.denovo.81, whole genome shotgun sequence	371..501																																																						avrA	ABNVMJ010000009.1	100004..100873	99.885	870	0						
GCA_032697505.1_PDT001930766.1_genomic.fna	Salmonella_enterica	0.5226	96.586 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,sul1,tet(A),tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVMK010000004.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.denovo.004, whole genome shotgun sequence	13428..13865	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVMK010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.denovo.045, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVMK010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.denovo.045, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNVMK010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.denovo.097, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNVMK010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.denovo.097, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNVMK010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.guided.049, whole genome shotgun sequence	14158..14595	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVMK010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.guided.064, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVMK010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.guided.064, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNVMK010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.guided.065, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVMK010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.guided.065, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNVMK010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.guided.096, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNVMK010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.guided.096, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNVMK010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.denovo.099, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNVMK010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.guided.100, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNVMK010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.denovo.088, whole genome shotgun sequence	2787..4000	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNVMK010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.guided.092, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNVMK010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.denovo.045, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNVMK010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.guided.064, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	sul1	99.88	840/840	ABNVMK010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.guided.065, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNVMK010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.denovo.045, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVMK010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.guided.064, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVMK010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.guided.065, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNVMK010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.denovo.087, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNVMK010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.guided.093, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVMK010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314546 SAMN37810052-rid19742913.denovo.084, whole genome shotgun sequence	5356..5915																																																						avrA	ABNVMK010000005.1	124259..125128	99.655	870	0						
GCA_032697545.1_PDT001930763.1_genomic.fna	Salmonella_enterica	0.5224	86.612 KB	17	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVMO010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314537 SAMN37810051-rid19744293.denovo.028, whole genome shotgun sequence	12472..12909	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVMO010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314537 SAMN37810051-rid19744293.denovo.054, whole genome shotgun sequence	22844..23635	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVMO010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314537 SAMN37810051-rid19744293.denovo.054, whole genome shotgun sequence	22844..23635	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNVMO010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314537 SAMN37810051-rid19744293.guided.058, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVMO010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314537 SAMN37810051-rid19744293.guided.070, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVMO010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314537 SAMN37810051-rid19744293.guided.070, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNVMO010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314537 SAMN37810051-rid19744293.denovo.054, whole genome shotgun sequence	21500..22339	Sulfamethoxazole	U12338	sul1	100	840/840	ABNVMO010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314537 SAMN37810051-rid19744293.guided.070, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNVMO010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314537 SAMN37810051-rid19744293.denovo.054, whole genome shotgun sequence	7784..8983	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVMO010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314537 SAMN37810051-rid19744293.guided.081, whole genome shotgun sequence	1866..3065	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVMO010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314537 SAMN37810051-rid19744293.denovo.071, whole genome shotgun sequence	2541..3100																																																						avrA	ABNVMO010000039.1	39536..40405	99.655	870	0						
GCA_032697565.1_PDT001930765.1_genomic.fna	Salmonella_enterica	0.5218	73.406 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		2	Col(pHAD28),IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVML010000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314536 SAMN37810050-rid19744303.denovo.011, whole genome shotgun sequence	32127..32564	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNVML010000065.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314536 SAMN37810050-rid19744303.denovo.067, whole genome shotgun sequence	12506..13408	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNVML010000065.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314536 SAMN37810050-rid19744303.denovo.067, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNVML010000146.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314536 SAMN37810050-rid19744303.guided.071, whole genome shotgun sequence	20617..21054	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNVML010000149.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314536 SAMN37810050-rid19744303.guided.110, whole genome shotgun sequence	37..939	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNVML010000150.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314536 SAMN37810050-rid19744303.guided.118, whole genome shotgun sequence	3307..4098	Spectinomycin, Streptomycin	JQ414041	sul2	100	816/816	ABNVML010000033.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314536 SAMN37810050-rid19744303.denovo.034, whole genome shotgun sequence	5050..5865	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNVML010000065.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314536 SAMN37810050-rid19744303.denovo.067, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul2	100	816/816	ABNVML010000144.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314536 SAMN37810050-rid19744303.guided.033, whole genome shotgun sequence	49747..50562	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNVML010000147.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314536 SAMN37810050-rid19744303.guided.108, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABNVML010000033.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314536 SAMN37810050-rid19744303.denovo.034, whole genome shotgun sequence	1674..2873	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNVML010000123.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314536 SAMN37810050-rid19744303.denovo.131, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABNVML010000144.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314536 SAMN37810050-rid19744303.guided.033, whole genome shotgun sequence	52739..53938	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNVML010000151.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314536 SAMN37810050-rid19744303.guided.129, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNVML010000111.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314536 SAMN37810050-rid19744303.denovo.117, whole genome shotgun sequence	371..501	enterobacteriales	IncX4	100	374 / 374	ABNVML010000125.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314536 SAMN37810050-rid19744303.denovo.133, whole genome shotgun sequence	219..592																																																avrA	ABNVML010000028.1	62173..63042	99.885	870	0						
GCA_032697605.1_PDT001930757.1_genomic.fna	Salmonella_enterica	0.522	94.76 KB	16	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVMP010000027.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314529 SAMN37810043-rid19742883.denovo.27, whole genome shotgun sequence	17135..17572	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVMP010000096.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314529 SAMN37810043-rid19742883.guided.48, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVMP010000065.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314529 SAMN37810043-rid19742883.denovo.68, whole genome shotgun sequence	6828..7470	enterobacteriales	IncFII(S)	100	262 / 262	ABNVMP010000078.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314529 SAMN37810043-rid19742883.denovo.81, whole genome shotgun sequence	1113..1374																																																avrA	ABNVMP010000005.1	98357..99226	99.54	870	0						
GCA_032697625.1_PDT001930764.1_genomic.fna	Salmonella_enterica	0.5219	68.387 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVMM010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314535 SAMN37810049-rid19742903.denovo.003, whole genome shotgun sequence	221973..222410	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVMM010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314535 SAMN37810049-rid19742903.denovo.062, whole genome shotgun sequence	22943..23734	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVMM010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314535 SAMN37810049-rid19742903.denovo.062, whole genome shotgun sequence	22943..23734	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNVMM010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314535 SAMN37810049-rid19742903.guided.100, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVMM010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314535 SAMN37810049-rid19742903.guided.100, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNVMM010000136.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314535 SAMN37810049-rid19742903.guided.101, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNVMM010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314535 SAMN37810049-rid19742903.denovo.062, whole genome shotgun sequence	21599..22438	Sulfamethoxazole	U12338	sul1	100	840/840	ABNVMM010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314535 SAMN37810049-rid19742903.guided.100, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNVMM010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314535 SAMN37810049-rid19742903.denovo.062, whole genome shotgun sequence	7883..9082	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVMM010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314535 SAMN37810049-rid19742903.guided.084, whole genome shotgun sequence	4983..6182	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVMM010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314535 SAMN37810049-rid19742903.denovo.102, whole genome shotgun sequence	6889..7448	enterobacteriales	IncX1	98.94	377 / 377	ABNVMM010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314535 SAMN37810049-rid19742903.denovo.133, whole genome shotgun sequence	172..548																																																avrA	ABNVMM010000020.1	39534..40403	99.655	870	0						
GCA_032697665.1_PDT001940392.1_genomic.fna	Salmonella_enterica	0.5222	181.517 KB	9	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQENJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00029469 SAMN37819696-rid19805273.denovo.01, whole genome shotgun sequence	38306..38743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQENJ010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00029469 SAMN37819696-rid19805273.guided.27, whole genome shotgun sequence	14255..14692	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQENJ010000003.1	106402..107271	98.966	870	0						
GCA_032697685.1_PDT001940409.1_genomic.fna	Salmonella_enterica	0.5213	130.577 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQENI010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028872 SAMN37819680-rid19809253.denovo.02, whole genome shotgun sequence	192984..193421	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQENI010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028872 SAMN37819680-rid19809253.guided.25, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQENI010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028872 SAMN37819680-rid19809253.denovo.33, whole genome shotgun sequence	40529..41171	enterobacteriales	IncFII(S)	100	262 / 262	DAQENI010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028872 SAMN37819680-rid19809253.denovo.51, whole genome shotgun sequence	3423..3684																																																avrA	DAQENI010000006.1	140958..141827	99.54	870	0						
GCA_032697705.1_PDT001940345.1_genomic.fna	Salmonella_enterica	0.5218	79.274 KB	22	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQENL010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045893 SAMN37819910-rid19811213.denovo.016, whole genome shotgun sequence	38005..38442	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQENL010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045893 SAMN37819910-rid19811213.guided.020, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQENL010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045893 SAMN37819910-rid19811213.denovo.014, whole genome shotgun sequence	43768..44410	enterobacteriales	IncFII(S)	100	262 / 262	DAQENL010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045893 SAMN37819910-rid19811213.denovo.014, whole genome shotgun sequence	59495..59756																																																avrA	DAQENL010000005.1	105236..106105	99.885	870	0						
GCA_032697725.1_PDT001940258.1_genomic.fna	Salmonella_enterica	0.5219	98.375 KB	17	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQENK010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00030455 SAMN37819701-rid19811163.denovo.021, whole genome shotgun sequence	32155..32592	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQENK010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00030455 SAMN37819701-rid19811163.guided.035, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	DAQENK010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00030455 SAMN37819701-rid19811163.denovo.004, whole genome shotgun sequence	139740..140162	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQENK010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00030455 SAMN37819701-rid19811163.guided.042, whole genome shotgun sequence	39321..39743	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQENK010000017.1	95257..96126	99.425	870	0						
GCA_032697745.1_PDT001940245.1_genomic.fna	Salmonella_enterica	0.5228	212.726 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQENM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00031338 SAMN37819712-rid19810543.denovo.01, whole genome shotgun sequence	477832..478269	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQENM010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00031338 SAMN37819712-rid19810543.guided.20, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQENM010000004.1	149611..150480	99.77	870	0						
GCA_032697765.1_PDT001940235.1_genomic.fna	Salmonella_enterica	0.5228	141.212 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQENN010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00032555 SAMN37819721-rid19810533.denovo.26, whole genome shotgun sequence	12550..12987	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQENN010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00032555 SAMN37819721-rid19810533.guided.30, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQENN010000001.1	149550..150419	99.77	870	0						
GCA_032697785.1_PDT001940190.1_genomic.fna	Salmonella_enterica	0.5222	56.382 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQENP010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046084 SAMN37819936-rid19809213.denovo.021, whole genome shotgun sequence	20847..21284	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQENP010000159.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046084 SAMN37819936-rid19809213.guided.063, whole genome shotgun sequence	14777..15214	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQENP010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046084 SAMN37819936-rid19809213.denovo.011, whole genome shotgun sequence	43133..43775	enterobacteriales	IncFII(S)	100	262 / 262	DAQENP010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046084 SAMN37819936-rid19809213.denovo.011, whole genome shotgun sequence	58860..59121																																																avrA	DAQENP010000008.1	61077..61946	99.885	870	0						
GCA_032697805.1_PDT001940113.1_genomic.fna	Salmonella_enterica	0.523	118.638 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQENO010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00025718 SAMN37819605-rid19809183.denovo.22, whole genome shotgun sequence	76142..76579	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQENO010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00025718 SAMN37819605-rid19809183.guided.32, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQENO010000008.1	124279..125148	99.77	870	0						
GCA_032697825.1_PDT001940061.1_genomic.fna	Salmonella_enterica	0.5212	188.09 KB	9	aroC_454,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	1925	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_454	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQENQ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036825 SAMN37819737-rid19811103.denovo.03, whole genome shotgun sequence	17217..17654	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQENQ010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036825 SAMN37819737-rid19811103.guided.23, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQENQ010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036825 SAMN37819737-rid19811103.denovo.29, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	DAQENQ010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036825 SAMN37819737-rid19811103.denovo.49, whole genome shotgun sequence	3413..3674																																																avrA	DAQENQ010000007.1	140958..141827	99.54	870	0						
GCA_032697845.1_PDT001940026.1_genomic.fna	Salmonella_enterica	0.5215	103.675 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQENR010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045569 SAMN37819855-rid19809143.denovo.14, whole genome shotgun sequence	52273..52710	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQENR010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045569 SAMN37819855-rid19809143.guided.39, whole genome shotgun sequence	15503..15940	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQENR010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045569 SAMN37819855-rid19809143.denovo.75, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQENR010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045569 SAMN37819855-rid19809143.denovo.45, whole genome shotgun sequence	18056..18698		enterobacteriales	IncFII(S)	100	262 / 262	DAQENR010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045569 SAMN37819855-rid19809143.denovo.45, whole genome shotgun sequence	3412..3673																																									avrA	DAQENR010000010.1	115317..116186	99.54	870	0						
GCA_032697865.1_PDT001940016.1_genomic.fna	Salmonella_enterica	0.5216	82.551 KB	19	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQENS010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045611 SAMN37819864-rid19809133.denovo.014, whole genome shotgun sequence	42785..43222	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQENS010000118.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045611 SAMN37819864-rid19809133.guided.031, whole genome shotgun sequence	24989..25426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQENS010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045611 SAMN37819864-rid19809133.denovo.094, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQENS010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045611 SAMN37819864-rid19809133.denovo.080, whole genome shotgun sequence	9171..9813		enterobacteriales	IncFII(S)	100	262 / 262	DAQENS010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045611 SAMN37819864-rid19809133.denovo.070, whole genome shotgun sequence	3412..3673																																									avrA	DAQENS010000006.1	60945..61814	99.54	870	0						
GCA_032697885.1_PDT001939961.1_genomic.fna	Salmonella_enterica	0.5218	95.72 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQENT010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048935 SAMN37820087-rid19809123.denovo.029, whole genome shotgun sequence	12568..13005	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQENT010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048935 SAMN37820087-rid19809123.guided.018, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQENT010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048935 SAMN37820087-rid19809123.denovo.019, whole genome shotgun sequence	44647..45289	enterobacteriales	IncFII(S)	100	262 / 262	DAQENT010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048935 SAMN37820087-rid19809123.denovo.019, whole genome shotgun sequence	60374..60635																																																avrA	DAQENT010000014.1	99946..100815	99.885	870	0						
GCA_032697905.1_PDT001939941.1_genomic.fna	Salmonella_enterica	0.5202	166.628 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQENU010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028338 SAMN37819643-rid19810453.denovo.02, whole genome shotgun sequence	176394..176831	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQENU010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028338 SAMN37819643-rid19810453.guided.18, whole genome shotgun sequence	24868..25305	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQENU010000005.1	123982..124851	99.77	870	0						
GCA_032697925.1_PDT001939931.1_genomic.fna	Salmonella_enterica	0.5206	148.378 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQENX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028370 SAMN37819652-rid19810433.denovo.01, whole genome shotgun sequence	382050..382487	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQENX010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028370 SAMN37819652-rid19810433.guided.32, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQENX010000015.1	39536..40405	99.77	870	0						
GCA_032697945.1_PDT001939921.1_genomic.fna	Salmonella_enterica	0.5213	161.894 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQENV010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028409 SAMN37819661-rid19811033.denovo.02, whole genome shotgun sequence	17222..17659	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQENV010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028409 SAMN37819661-rid19811033.guided.35, whole genome shotgun sequence	31192..31629	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQENV010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028409 SAMN37819661-rid19811033.denovo.53, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQENV010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028409 SAMN37819661-rid19811033.denovo.28, whole genome shotgun sequence	36764..37406		enterobacteriales	IncFII(S)	100	262 / 262	DAQENV010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028409 SAMN37819661-rid19811033.denovo.28, whole genome shotgun sequence	51789..52050																																									avrA	DAQENV010000013.1	43592..44461	99.54	870	0						
GCA_032697965.1_PDT001939787.1_genomic.fna	Salmonella_enterica	0.5214	110.23 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQENW010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023698 SAMN37819570-rid19810393.denovo.26, whole genome shotgun sequence	14115..14552	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQENW010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023698 SAMN37819570-rid19810393.guided.30, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQENW010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023698 SAMN37819570-rid19810393.denovo.33, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQENW010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023698 SAMN37819570-rid19810393.denovo.68, whole genome shotgun sequence	3413..3674																																																avrA	DAQENW010000013.1	115362..116231	99.54	870	0						
GCA_032697985.1_PDT001939777.1_genomic.fna	Salmonella_enterica	0.5212	119.798 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQENY010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028841 SAMN37819676-rid19810383.denovo.09, whole genome shotgun sequence	52430..52867	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQENY010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028841 SAMN37819676-rid19810383.guided.32, whole genome shotgun sequence	7298..7735	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQENY010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028841 SAMN37819676-rid19810383.denovo.63, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQENY010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028841 SAMN37819676-rid19810383.denovo.30, whole genome shotgun sequence	36764..37406		enterobacteriales	IncFII(S)	100	262 / 262	DAQENY010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028841 SAMN37819676-rid19810383.denovo.30, whole genome shotgun sequence	51789..52050																																									avrA	DAQENY010000012.1	43550..44419	99.54	870	0						
GCA_032698005.1_PDT001930762.1_genomic.fna	Salmonella_enterica	0.5213	66.836 KB	23	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNVMR010000018.1 Salmonella enterica subsp. enterica serovar Blockley strain FSIS22314547 SAMN37810053-rid19742073.denovo.018, whole genome shotgun sequence	20897..21334	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNVMR010000139.1 Salmonella enterica subsp. enterica serovar Blockley strain FSIS22314547 SAMN37810053-rid19742073.guided.033, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVMR010000008.1	114592..115461	99.425	870	0						
GCA_032698025.1_PDT001930761.1_genomic.fna	Salmonella_enterica	0.5203	102.035 KB	17	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	5	Col(pHAD28),Col440I,ColRNAI,IncFII(pCTU2),pESA2	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNVMT010000003.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS22314548 SAMN37810054-rid19744283.denovo.003, whole genome shotgun sequence	31680..32117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNVMT010000121.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS22314548 SAMN37810054-rid19744283.guided.036, whole genome shotgun sequence	31721..32158	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNVMT010000093.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS22314548 SAMN37810054-rid19744283.denovo.096, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	94.59	111 / 114	ABNVMT010000091.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS22314548 SAMN37810054-rid19744283.denovo.094, whole genome shotgun sequence	3175..3285		enterobacteriales	ColRNAI	90.08	131 / 130	ABNVMT010000087.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS22314548 SAMN37810054-rid19744283.denovo.090, whole genome shotgun sequence	3981..4111		enterobacteriales	IncFII(pCTU2)	97.23	577 / 577	ABNVMT010000054.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS22314548 SAMN37810054-rid19744283.denovo.056, whole genome shotgun sequence	6055..6631		enterobacteriales	pESA2	98.4	750 / 750	ABNVMT010000054.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS22314548 SAMN37810054-rid19744283.denovo.056, whole genome shotgun sequence	22450..23199																											avrA	ABNVMT010000027.1	61568..62437	99.54	870	0						
GCA_032698045.1_PDT001930760.1_genomic.fna	Salmonella_enterica	0.5209	65.419 KB	26	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVMU010000011.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314534 SAMN37810048-rid19744273.denovo.011, whole genome shotgun sequence	76194..76631	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVMU010000110.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314534 SAMN37810048-rid19744273.denovo.113, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNVMU010000110.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314534 SAMN37810048-rid19744273.denovo.113, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNVMU010000191.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314534 SAMN37810048-rid19744273.guided.074, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVMU010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314534 SAMN37810048-rid19744273.guided.120, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNVMU010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314534 SAMN37810048-rid19744273.guided.120, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNVMU010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314534 SAMN37810048-rid19744273.denovo.136, whole genome shotgun sequence	2279..3484	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNVMU010000195.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314534 SAMN37810048-rid19744273.guided.134, whole genome shotgun sequence	2310..3515	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNVMU010000127.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314534 SAMN37810048-rid19744273.denovo.131, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNVMU010000110.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314534 SAMN37810048-rid19744273.denovo.113, whole genome shotgun sequence	1831..2092		enterobacteriales	IncFII	96.95	262 / 261	ABNVMU010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314534 SAMN37810048-rid19744273.guided.120, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNVMU010000114.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314534 SAMN37810048-rid19744273.denovo.117, whole genome shotgun sequence	4479..4620		enterobacteriales	IncX1	100	373 / 373	ABNVMU010000124.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314534 SAMN37810048-rid19744273.denovo.128, whole genome shotgun sequence	2732..3104																											avrA	ABNVMU010000040.1	39484..40353	99.655	870	0						
GCA_032698065.1_PDT001930759.1_genomic.fna	Salmonella_enterica	0.5215	66.363 KB	24	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVMV010000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314530 SAMN37810044-rid19742893.denovo.009, whole genome shotgun sequence	12484..12921	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVMV010000166.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314530 SAMN37810044-rid19742893.guided.074, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	100	373 / 373	ABNVMV010000135.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314530 SAMN37810044-rid19742893.denovo.138, whole genome shotgun sequence	1127..1499																																																						avrA	ABNVMV010000041.1	39484..40353	99.655	870	0						
GCA_032698085.1_PDT001930758.1_genomic.fna	Salmonella_enterica	0.5198	59.001 KB	25	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVMX010000021.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314531 SAMN37810045-rid19744263.denovo.021, whole genome shotgun sequence	12513..12950	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVMX010000062.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314531 SAMN37810045-rid19744263.denovo.064, whole genome shotgun sequence	2754..3590	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVMX010000062.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314531 SAMN37810045-rid19744263.denovo.064, whole genome shotgun sequence	1952..2754	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVMX010000062.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314531 SAMN37810045-rid19744263.denovo.064, whole genome shotgun sequence	1951..2754	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVMX010000062.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314531 SAMN37810045-rid19744263.denovo.064, whole genome shotgun sequence	1951..2754	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVMX010000062.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314531 SAMN37810045-rid19744263.denovo.064, whole genome shotgun sequence	1951..2754	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNVMX010000193.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314531 SAMN37810045-rid19744263.guided.084, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVMX010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314531 SAMN37810045-rid19744263.guided.131, whole genome shotgun sequence	2795..3631	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVMX010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314531 SAMN37810045-rid19744263.guided.131, whole genome shotgun sequence	1993..2795	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVMX010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314531 SAMN37810045-rid19744263.guided.131, whole genome shotgun sequence	1992..2795	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVMX010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314531 SAMN37810045-rid19744263.guided.131, whole genome shotgun sequence	1992..2795	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVMX010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314531 SAMN37810045-rid19744263.guided.131, whole genome shotgun sequence	1992..2795	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNVMX010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314531 SAMN37810045-rid19744263.denovo.048, whole genome shotgun sequence	12764..13090	enterobacteriales	IncHI2A	99.37	630 / 630	ABNVMX010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314531 SAMN37810045-rid19744263.denovo.048, whole genome shotgun sequence	31074..31703		enterobacteriales	IncX1	100	373 / 373	ABNVMX010000130.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314531 SAMN37810045-rid19744263.denovo.134, whole genome shotgun sequence	2153..2525																																									avrA	ABNVMX010000034.1	39484..40353	99.655	870	0						
GCA_032698135.1_PDT001930756.1_genomic.fna	Salmonella_enterica	0.5226	67.721 KB	23	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVMW010000002.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314533 SAMN37810047-rid19744253.denovo.002, whole genome shotgun sequence	18014..18451	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVMW010000135.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314533 SAMN37810047-rid19744253.guided.068, whole genome shotgun sequence	3471..3908	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVMW010000087.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314533 SAMN37810047-rid19744253.denovo.089, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABNVMW010000090.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314533 SAMN37810047-rid19744253.denovo.092, whole genome shotgun sequence	3413..3674																																																avrA	ABNVMW010000017.1	81622..82491	99.54	870	0						
GCA_032698545.1_PDT001940033.1_genomic.fna	Salmonella_enterica	0.5213	96.311 KB	17	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEKL010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045540 SAMN37819848-rid19801253.denovo.007, whole genome shotgun sequence	62408..62845	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEKL010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045540 SAMN37819848-rid19801253.guided.023, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEKL010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045540 SAMN37819848-rid19801253.denovo.079, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEKL010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045540 SAMN37819848-rid19801253.denovo.048, whole genome shotgun sequence	18066..18708		enterobacteriales	IncFII(S)	100	262 / 262	DAQEKL010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045540 SAMN37819848-rid19801253.denovo.048, whole genome shotgun sequence	3422..3683																																									avrA	DAQEKL010000003.1	115307..116176	99.54	870	0						
GCA_032698555.1_PDT001940013.1_genomic.fna	Salmonella_enterica	0.5219	65.377 KB	22	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKK010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045634 SAMN37819867-rid19801223.denovo.002, whole genome shotgun sequence	15475..15912	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKK010000165.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045634 SAMN37819867-rid19801223.guided.019, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKK010000125.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045634 SAMN37819867-rid19801223.denovo.128, whole genome shotgun sequence	99..741	enterobacteriales	IncFII(S)	100	262 / 262	DAQEKK010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045634 SAMN37819867-rid19801223.denovo.041, whole genome shotgun sequence	29400..29661		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEKK010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045634 SAMN37819867-rid19801223.denovo.065, whole genome shotgun sequence	8362..8498																																									avrA	DAQEKK010000017.1	39625..40494	99.885	870	0						
GCA_032698585.1_PDT001940327.1_genomic.fna	Salmonella_enterica	0.5213	150.285 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKM010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047045 SAMN37820013-rid19803903.denovo.02, whole genome shotgun sequence	15481..15918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKM010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047045 SAMN37820013-rid19803903.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKM010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047045 SAMN37820013-rid19803903.denovo.16, whole genome shotgun sequence	44669..45311	enterobacteriales	IncFII(S)	100	262 / 262	DAQEKM010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047045 SAMN37820013-rid19803903.denovo.16, whole genome shotgun sequence	60396..60657																																																avrA	DAQEKM010000004.1	123465..124334	99.885	870	0						
GCA_032698605.1_PDT001939863.1_genomic.fna	Salmonella_enterica	0.5218	93.849 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKN010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045804 SAMN37819887-rid19799293.denovo.002, whole genome shotgun sequence	38048..38485	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKN010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045804 SAMN37819887-rid19799293.guided.011, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEKN010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045804 SAMN37819887-rid19799293.denovo.084, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKN010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045804 SAMN37819887-rid19799293.denovo.014, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	DAQEKN010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045804 SAMN37819887-rid19799293.denovo.014, whole genome shotgun sequence	30407..30668																																									avrA	DAQEKN010000005.1	99957..100826	99.885	870	0						
GCA_032698625.1_PDT001939930.1_genomic.fna	Salmonella_enterica	0.5213	166.039 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEKO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028374 SAMN37819653-rid19794283.denovo.01, whole genome shotgun sequence	192983..193420	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEKO010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028374 SAMN37819653-rid19794283.guided.24, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEKO010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028374 SAMN37819653-rid19794283.denovo.53, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEKO010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028374 SAMN37819653-rid19794283.denovo.23, whole genome shotgun sequence	40532..41174		enterobacteriales	IncFII(S)	100	262 / 262	DAQEKO010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028374 SAMN37819653-rid19794283.denovo.23, whole genome shotgun sequence	55557..55818																																									avrA	DAQEKO010000007.1	115401..116270	99.54	870	0						
GCA_032698665.1_PDT001939859.1_genomic.fna	Salmonella_enterica	0.5222	58.499 KB	29	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKR010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045815 SAMN37819890-rid19803763.denovo.024, whole genome shotgun sequence	12556..12993	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKR010000156.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045815 SAMN37819890-rid19803763.guided.032, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKR010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045815 SAMN37819890-rid19803763.denovo.009, whole genome shotgun sequence	14689..15331	enterobacteriales	IncFII(S)	100	262 / 262	DAQEKR010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045815 SAMN37819890-rid19803763.denovo.009, whole genome shotgun sequence	30416..30677																																																avrA	DAQEKR010000002.1	106589..107458	99.885	870	0						
GCA_032698685.1_PDT001939855.1_genomic.fna	Salmonella_enterica	0.5227	51.922 KB	32	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEKQ010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045847 SAMN37819894-rid19794253.denovo.018, whole genome shotgun sequence	12436..12873	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEKQ010000184.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045847 SAMN37819894-rid19794253.guided.024, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEKQ010000139.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045847 SAMN37819894-rid19794253.denovo.142, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEKQ010000112.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045847 SAMN37819894-rid19794253.denovo.115, whole genome shotgun sequence	9171..9813		enterobacteriales	IncFII(S)	100	262 / 262	DAQEKQ010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045847 SAMN37819894-rid19794253.denovo.037, whole genome shotgun sequence	29408..29669																																									avrA	DAQEKQ010000005.1	104993..105862	99.885	870	0						
GCA_032698765.1_PDT001930740.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVNJ010000001.1 Salmonella enterica strain PNUSAS391260 SAMN37809579-rid19737943.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVNJ010000025.1 Salmonella enterica strain PNUSAS391260 SAMN37809579-rid19737943.guided.16, whole genome shotgun sequence	15634..16071	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVNJ010000013.1 Salmonella enterica strain PNUSAS391260 SAMN37809579-rid19737943.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNVNJ010000017.1 Salmonella enterica strain PNUSAS391260 SAMN37809579-rid19737943.denovo.20, whole genome shotgun sequence	3408..3669																																																avrA	ABNVNJ010000002.1	553320..554189	99.54	870	0						
GCA_032698825.1_PDT001930715.1_genomic.fna	Salmonella_enterica	0.5214	682.666 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNVNQ010000001.1 Salmonella enterica strain PNUSAS391006 SAMN37808942-rid19737813.denovo.01, whole genome shotgun sequence	596592..597029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNVNQ010000021.1 Salmonella enterica strain PNUSAS391006 SAMN37808942-rid19737813.guided.11, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVNQ010000004.1	544607..545475	99.425	870	0						
GCA_032698845.1_PDT001930721.1_genomic.fna	Salmonella_enterica	0.5208	140.435 KB	11	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,ColpVC,ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNVNP010000001.1 Salmonella enterica strain PNUSAS391224 SAMN37808957-rid19737853.denovo.01, whole genome shotgun sequence	264516..264953	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNVNP010000064.1 Salmonella enterica strain PNUSAS391224 SAMN37808957-rid19737853.guided.56, whole genome shotgun sequence	592..1029	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.86	114 / 114	ABNVNP010000050.1 Salmonella enterica strain PNUSAS391224 SAMN37808957-rid19737853.denovo.51, whole genome shotgun sequence	2734..2847	enterobacteriales	ColpVC	96.89	193 / 193	ABNVNP010000052.1 Salmonella enterica strain PNUSAS391224 SAMN37808957-rid19737853.denovo.54, whole genome shotgun sequence	1524..1716		enterobacteriales	ColpVC	98.96	193 / 193	ABNVNP010000053.1 Salmonella enterica strain PNUSAS391224 SAMN37808957-rid19737853.denovo.55, whole genome shotgun sequence	804..996		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNVNP010000023.1 Salmonella enterica strain PNUSAS391224 SAMN37808957-rid19737853.denovo.23, whole genome shotgun sequence	67749..67890																																		avrA	ABNVNP010000002.1	171189..172058	99.425	870	0						
GCA_032698885.1_PDT001930709.1_genomic.fna	Salmonella_enterica	0.5222	172.939 KB	9	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(BS512),IncN2	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVNS010000001.1 Salmonella enterica strain PNUSAS391222 SAMN37808954-rid19739193.denovo.01, whole genome shotgun sequence	170344..170781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVNS010000050.1 Salmonella enterica strain PNUSAS391222 SAMN37808954-rid19739193.guided.39, whole genome shotgun sequence	4037..4474	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(BS512)	100	233 / 233	ABNVNS010000041.1 Salmonella enterica strain PNUSAS391222 SAMN37808954-rid19739193.denovo.44, whole genome shotgun sequence	400..632	enterobacteriales	IncN2	99.37	477 / 477	ABNVNS010000030.1 Salmonella enterica strain PNUSAS391222 SAMN37808954-rid19739193.denovo.31, whole genome shotgun sequence	32615..33091																																																											
GCA_032698905.1_PDT001790674.1_genomic.fna	Salmonella_enterica	0.5205	437.192 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	3	Col(pHAD28),IncI1-I(Alpha),IncI1-I(Alpha),p0111	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVNT010000001.1 Salmonella enterica strain PNUSAS358460 SAMN35989717-rid18558663.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVNT010000034.1 Salmonella enterica strain PNUSAS358460 SAMN35989717-rid18558663.guided.20, whole genome shotgun sequence	12137..12574	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNVNT010000011.1 Salmonella enterica strain PNUSAS358460 SAMN35989717-rid18558663.denovo.11, whole genome shotgun sequence	69990..71195	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNVNT010000033.1 Salmonella enterica strain PNUSAS358460 SAMN35989717-rid18558663.guided.19, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNVNT010000021.1 Salmonella enterica strain PNUSAS358460 SAMN35989717-rid18558663.denovo.25, whole genome shotgun sequence	547..675	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNVNT010000011.1 Salmonella enterica strain PNUSAS358460 SAMN35989717-rid18558663.denovo.11, whole genome shotgun sequence	77581..77722		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNVNT010000033.1 Salmonella enterica strain PNUSAS358460 SAMN35989717-rid18558663.guided.19, whole genome shotgun sequence	3169..3310		enterobacteriales	p0111	99.44	885 / 885	ABNVNT010000012.1 Salmonella enterica strain PNUSAS358460 SAMN35989717-rid18558663.denovo.12, whole genome shotgun sequence	66169..67053																																		avrA	ABNVNT010000007.1	147026..147895	98.966	870	0						
GCA_032698925.1_PDT001930714.1_genomic.fna	Salmonella_enterica	0.5207	609.7 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVNR010000001.1 Salmonella enterica strain PNUSAS391013 SAMN37808945-rid19739203.denovo.01, whole genome shotgun sequence	613387..613824	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVNR010000030.1 Salmonella enterica strain PNUSAS391013 SAMN37808945-rid19739203.guided.16, whole genome shotgun sequence	36870..37307	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVNR010000003.1	514960..515828	99.195	870	0						
GCA_032698945.1_PDT001790673.1_genomic.fna	Salmonella_enterica	0.5211	315.825 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	Col440I	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVNU010000001.1 Salmonella enterica strain PNUSAS358474 SAMN35989752-rid18558653.denovo.01, whole genome shotgun sequence	145270..145707	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVNU010000034.1 Salmonella enterica strain PNUSAS358474 SAMN35989752-rid18558653.denovo.39, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVNU010000034.1 Salmonella enterica strain PNUSAS358474 SAMN35989752-rid18558653.denovo.39, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNVNU010000046.1 Salmonella enterica strain PNUSAS358474 SAMN35989752-rid18558653.guided.28, whole genome shotgun sequence	4778..5215	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVNU010000049.1 Salmonella enterica strain PNUSAS358474 SAMN35989752-rid18558653.guided.38, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVNU010000049.1 Salmonella enterica strain PNUSAS358474 SAMN35989752-rid18558653.guided.38, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNVNU010000038.1 Salmonella enterica strain PNUSAS358474 SAMN35989752-rid18558653.denovo.44, whole genome shotgun sequence	369..1229	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNVNU010000050.1 Salmonella enterica strain PNUSAS358474 SAMN35989752-rid18558653.guided.43, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNVNU010000034.1 Salmonella enterica strain PNUSAS358474 SAMN35989752-rid18558653.denovo.39, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNVNU010000049.1 Salmonella enterica strain PNUSAS358474 SAMN35989752-rid18558653.guided.38, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNVNU010000028.1 Salmonella enterica strain PNUSAS358474 SAMN35989752-rid18558653.denovo.31, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNVNU010000047.1 Salmonella enterica strain PNUSAS358474 SAMN35989752-rid18558653.guided.30, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col440I	93.64	110 / 114	ABNVNU010000036.1 Salmonella enterica strain PNUSAS358474 SAMN35989752-rid18558653.denovo.41, whole genome shotgun sequence	1568..1677																																																						avrA	ABNVNU010000002.1	508772..509641	99.885	870	0						
GCA_032698965.1_PDT001790672.1_genomic.fna	Salmonella_enterica	0.5219	367.997 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVNV010000001.1 Salmonella enterica strain PNUSAS358469 SAMN35989711-rid18558643.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVNV010000037.1 Salmonella enterica strain PNUSAS358469 SAMN35989711-rid18558643.guided.26, whole genome shotgun sequence	2614..3051	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNVNV010000015.1 Salmonella enterica strain PNUSAS358469 SAMN35989711-rid18558643.denovo.15, whole genome shotgun sequence	65921..67126	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNVNV010000038.1 Salmonella enterica strain PNUSAS358469 SAMN35989711-rid18558643.guided.27, whole genome shotgun sequence	3144..4349	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNVNV010000015.1 Salmonella enterica strain PNUSAS358469 SAMN35989711-rid18558643.denovo.15, whole genome shotgun sequence	73512..73653																																																						avrA	ABNVNV010000002.1	150020..150889	99.655	870	0						
GCA_032698985.1_PDT001940412.1_genomic.fna	Salmonella_enterica	0.5214	80.774 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQENZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045268 SAMN37819821-rid19806543.denovo.001, whole genome shotgun sequence	82236..82673	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQENZ010000107.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045268 SAMN37819821-rid19806543.guided.010, whole genome shotgun sequence	11573..12010	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQENZ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045268 SAMN37819821-rid19806543.denovo.014, whole genome shotgun sequence	48418..49060	enterobacteriales	IncFII(S)	100	262 / 262	DAQENZ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045268 SAMN37819821-rid19806543.denovo.014, whole genome shotgun sequence	64145..64406																																																avrA	DAQENZ010000004.1	61077..61946	99.885	870	0						
GCA_032699045.1_PDT001940399.1_genomic.fna	Salmonella_enterica	0.5212	284.086 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEOA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029164 SAMN37819689-rid19809243.denovo.01, whole genome shotgun sequence	478949..479386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEOA010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029164 SAMN37819689-rid19809243.guided.22, whole genome shotgun sequence	14012..14449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEOA010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029164 SAMN37819689-rid19809243.denovo.29, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEOA010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029164 SAMN37819689-rid19809243.denovo.19, whole genome shotgun sequence	40532..41174		enterobacteriales	IncFII(S)	100	262 / 262	DAQEOA010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029164 SAMN37819689-rid19809243.denovo.19, whole genome shotgun sequence	55557..55818																																									avrA	DAQEOA010000002.1	553563..554432	99.54	870	0						
GCA_032699065.1_PDT001940397.1_genomic.fna	Salmonella_enterica	0.5206	184.452 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEOB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00029190 SAMN37819691-rid19810573.denovo.01, whole genome shotgun sequence	477854..478291	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEOB010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00029190 SAMN37819691-rid19810573.guided.43, whole genome shotgun sequence	10318..10755	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEOB010000005.1	149541..150410	99.77	870	0						
GCA_032699085.1_PDT001940387.1_genomic.fna	Salmonella_enterica	0.5198	127.39 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEOC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041507 SAMN37819787-rid19811223.denovo.01, whole genome shotgun sequence	162558..162995	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEOC010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041507 SAMN37819787-rid19811223.guided.27, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQEOC010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041507 SAMN37819787-rid19811223.denovo.64, whole genome shotgun sequence	368..498	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEOC010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041507 SAMN37819787-rid19811223.denovo.31, whole genome shotgun sequence	40532..41174		enterobacteriales	IncFII(S)	100	262 / 262	DAQEOC010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041507 SAMN37819787-rid19811223.denovo.56, whole genome shotgun sequence	3419..3680																																									avrA	DAQEOC010000004.1	140789..141658	99.54	870	0						
GCA_032699105.1_PDT001940342.1_genomic.fna	Salmonella_enterica	0.5216	80.891 KB	23	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEOE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045897 SAMN37819913-rid19807843.denovo.001, whole genome shotgun sequence	38010..38447	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEOE010000124.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045897 SAMN37819913-rid19807843.guided.023, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEOE010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045897 SAMN37819913-rid19807843.denovo.014, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQEOE010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045897 SAMN37819913-rid19807843.denovo.014, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEOE010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045897 SAMN37819913-rid19807843.denovo.017, whole genome shotgun sequence	15829..15965																																									avrA	DAQEOE010000044.1	39625..40494	99.885	870	0						
GCA_032699125.1_PDT001940333.1_genomic.fna	Salmonella_enterica	0.5218	80.166 KB	21	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEOD010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045910 SAMN37819921-rid19811203.denovo.027, whole genome shotgun sequence	17803..18240	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEOD010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045910 SAMN37819921-rid19811203.guided.024, whole genome shotgun sequence	33566..34003	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEOD010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045910 SAMN37819921-rid19811203.denovo.092, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEOD010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045910 SAMN37819921-rid19811203.denovo.082, whole genome shotgun sequence	8567..9209		enterobacteriales	IncFII(S)	100	262 / 262	DAQEOD010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045910 SAMN37819921-rid19811203.denovo.074, whole genome shotgun sequence	3402..3663																																									avrA	DAQEOD010000009.1	115366..116235	99.54	870	0						
GCA_032699145.1_PDT001940332.1_genomic.fna	Salmonella_enterica	0.5221	59.1 KB	30	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEOF010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046008 SAMN37819922-rid19809233.denovo.023, whole genome shotgun sequence	13418..13855	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEOF010000156.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046008 SAMN37819922-rid19809233.guided.076, whole genome shotgun sequence	9870..10307	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEOF010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046008 SAMN37819922-rid19809233.denovo.008, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQEOF010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046008 SAMN37819922-rid19809233.denovo.008, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEOF010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046008 SAMN37819922-rid19809233.denovo.050, whole genome shotgun sequence	22488..22624																																									avrA	DAQEOF010000016.1	39625..40494	99.885	870	0						
GCA_032699165.1_PDT001940287.1_genomic.fna	Salmonella_enterica	0.5215	82.71 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEOG010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051013 SAMN37820136-rid19807833.denovo.025, whole genome shotgun sequence	12525..12962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEOG010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051013 SAMN37820136-rid19807833.guided.013, whole genome shotgun sequence	34213..34650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEOG010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051013 SAMN37820136-rid19807833.denovo.014, whole genome shotgun sequence	44647..45289	enterobacteriales	IncFII(S)	100	262 / 262	DAQEOG010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051013 SAMN37820136-rid19807833.denovo.014, whole genome shotgun sequence	60374..60635																																																avrA	DAQEOG010000003.1	108153..109022	99.885	870	0						
GCA_032699185.1_PDT001940273.1_genomic.fna	Salmonella_enterica	0.5202	204.608 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEOH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00023972 SAMN37819575-rid19813203.denovo.01, whole genome shotgun sequence	302683..303120	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEOH010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00023972 SAMN37819575-rid19813203.guided.16, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEOH010000004.1	149592..150461	99.655	870	0						
GCA_032699205.1_PDT001940181.1_genomic.fna	Salmonella_enterica	0.5209	129.366 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEOI010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046290 SAMN37819944-rid19811143.denovo.04, whole genome shotgun sequence	145229..145666	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEOI010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046290 SAMN37819944-rid19811143.guided.08, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEOI010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046290 SAMN37819944-rid19811143.denovo.17, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQEOI010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046290 SAMN37819944-rid19811143.denovo.17, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEOI010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046290 SAMN37819944-rid19811143.denovo.36, whole genome shotgun sequence	22488..22624																																									avrA	DAQEOI010000010.1	39625..40494	99.885	870	0						
GCA_032699225.1_PDT001940170.1_genomic.fna	Salmonella_enterica	0.5219	81.498 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEOJ010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046437 SAMN37819954-rid19810523.denovo.026, whole genome shotgun sequence	17430..17867	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEOJ010000124.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046437 SAMN37819954-rid19810523.guided.008, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEOJ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046437 SAMN37819954-rid19810523.denovo.016, whole genome shotgun sequence	68521..69163	enterobacteriales	IncFII(S)	100	262 / 262	DAQEOJ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046437 SAMN37819954-rid19810523.denovo.016, whole genome shotgun sequence	84248..84509																																																avrA	DAQEOJ010000001.1	108249..109118	99.885	870	0						
GCA_032699245.1_PDT001940168.1_genomic.fna	Salmonella_enterica	0.5215	93.829 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEOK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047967 SAMN37820042-rid19810513.denovo.001, whole genome shotgun sequence	83720..84157	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEOK010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047967 SAMN37820042-rid19810513.guided.050, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEOK010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047967 SAMN37820042-rid19810513.denovo.015, whole genome shotgun sequence	48436..49078	enterobacteriales	IncFII(S)	100	262 / 262	DAQEOK010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047967 SAMN37820042-rid19810513.denovo.015, whole genome shotgun sequence	64163..64424		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEOK010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047967 SAMN37820042-rid19810513.denovo.040, whole genome shotgun sequence	22488..22624																																									avrA	DAQEOK010000010.1	94139..95008	99.885	870	0						
GCA_032699265.1_PDT001940158.1_genomic.fna	Salmonella_enterica	0.5211	150.583 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEOL010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00048099 SAMN37820051-rid19810503.denovo.35, whole genome shotgun sequence	22157..22594	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEOL010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00048099 SAMN37820051-rid19810503.guided.40, whole genome shotgun sequence	12350..12787	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	DAQEOL010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00048099 SAMN37820051-rid19810503.denovo.70, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQEOL010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00048099 SAMN37820051-rid19810503.guided.71, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEOL010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00048099 SAMN37820051-rid19810503.denovo.31, whole genome shotgun sequence	40531..41173	enterobacteriales	IncFII(S)	100	262 / 262	DAQEOL010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00048099 SAMN37820051-rid19810503.denovo.59, whole genome shotgun sequence	3412..3673		enterobacteriales	IncX1	95.76	377 / 377	DAQEOL010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00048099 SAMN37820051-rid19810503.denovo.36, whole genome shotgun sequence	4749..5125																																									avrA	DAQEOL010000004.1	140958..141827	99.54	870	0						
GCA_032699285.1_PDT001940153.1_genomic.fna	Salmonella_enterica	0.5216	107.826 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEON010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048144 SAMN37820056-rid19806493.denovo.01, whole genome shotgun sequence	378940..379377	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEON010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048144 SAMN37820056-rid19806493.guided.46, whole genome shotgun sequence	14702..15139	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEON010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048144 SAMN37820056-rid19806493.denovo.15, whole genome shotgun sequence	48423..49065	enterobacteriales	IncFII(S)	100	262 / 262	DAQEON010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048144 SAMN37820056-rid19806493.denovo.15, whole genome shotgun sequence	64150..64411																																																avrA	DAQEON010000005.1	98325..99194	99.77	870	0						
GCA_032699305.1_PDT001940151.1_genomic.fna	Salmonella_enterica	0.519	281.886 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	5	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncX1,pXuzhou21	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEOM010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.denovo.03, whole genome shotgun sequence	106346..106783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEOM010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.guided.31, whole genome shotgun sequence	13832..14269	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	DAQEOM010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.denovo.28, whole genome shotgun sequence	3382..4242	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQEOM010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.denovo.28, whole genome shotgun sequence	3382..4242	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQEOM010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.denovo.28, whole genome shotgun sequence	3382..4242	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQEOM010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.denovo.28, whole genome shotgun sequence	3382..4242	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQEOM010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.denovo.28, whole genome shotgun sequence	3382..4242	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	DAQEOM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.guided.42, whole genome shotgun sequence	3423..4283	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQEOM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.guided.42, whole genome shotgun sequence	3423..4283	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQEOM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.guided.42, whole genome shotgun sequence	3423..4283	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQEOM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.guided.42, whole genome shotgun sequence	3423..4283	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQEOM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.guided.42, whole genome shotgun sequence	3423..4283	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEOM010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.denovo.26, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQEOM010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.denovo.37, whole genome shotgun sequence	3415..3676		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQEOM010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.denovo.19, whole genome shotgun sequence	2025..2166		enterobacteriales	IncX1	98.66	374 / 374	DAQEOM010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.denovo.28, whole genome shotgun sequence	10008..10381		enterobacteriales	pXuzhou21	92.08	720 / 720	DAQEOM010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023146 SAMN37819563-rid19813053.denovo.29, whole genome shotgun sequence	20786..21505																											avrA	DAQEOM010000011.1	60986..61855	99.54	870	0						
GCA_032699325.1_PDT001940106.1_genomic.fna	Salmonella_enterica	0.5219	361.399 KB	4	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQEOO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00025916 SAMN37819609-rid19811113.denovo.01, whole genome shotgun sequence	38306..38743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQEOO010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00025916 SAMN37819609-rid19811113.guided.17, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEOO010000002.1	150674..151543	98.966	870	0						
GCA_032699345.1_PDT001940093.1_genomic.fna	Salmonella_enterica	0.5211	168.725 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncFII(pCTU2),pESA2	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEOP010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027104 SAMN37819621-rid19810493.denovo.05, whole genome shotgun sequence	48277..48714	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEOP010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027104 SAMN37819621-rid19810493.guided.30, whole genome shotgun sequence	34195..34632	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEOP010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027104 SAMN37819621-rid19810493.denovo.32, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQEOP010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027104 SAMN37819621-rid19810493.denovo.49, whole genome shotgun sequence	3421..3682		enterobacteriales	IncFII(pCTU2)	97.23	577 / 577	DAQEOP010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027104 SAMN37819621-rid19810493.denovo.38, whole genome shotgun sequence	4742..5318		enterobacteriales	pESA2	98.4	750 / 750	DAQEOP010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027104 SAMN37819621-rid19810493.denovo.38, whole genome shotgun sequence	21137..21886																																		avrA	DAQEOP010000006.1	129674..130543	99.54	870	0						
GCA_032699365.1_PDT001940086.1_genomic.fna	Salmonella_enterica	0.5208	124.676 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEOQ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021574 SAMN37819520-rid19812983.denovo.02, whole genome shotgun sequence	17205..17642	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQEOQ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021574 SAMN37819520-rid19812983.denovo.52, whole genome shotgun sequence	10048..10878	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQEOQ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021574 SAMN37819520-rid19812983.denovo.52, whole genome shotgun sequence	9239..10042	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	DAQEOQ010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021574 SAMN37819520-rid19812983.guided.44, whole genome shotgun sequence	4244..4681	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQEOQ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021574 SAMN37819520-rid19812983.guided.62, whole genome shotgun sequence	5239..6069	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQEOQ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021574 SAMN37819520-rid19812983.guided.62, whole genome shotgun sequence	4430..5233	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQEOQ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021574 SAMN37819520-rid19812983.denovo.52, whole genome shotgun sequence	11599..12459	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQEOQ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021574 SAMN37819520-rid19812983.guided.64, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	DAQEOQ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021574 SAMN37819520-rid19812983.denovo.52, whole genome shotgun sequence	8363..9178	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQEOQ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021574 SAMN37819520-rid19812983.guided.62, whole genome shotgun sequence	3554..4369	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEOQ010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021574 SAMN37819520-rid19812983.denovo.35, whole genome shotgun sequence	32997..33639	enterobacteriales	IncFII(S)	100	262 / 262	DAQEOQ010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021574 SAMN37819520-rid19812983.denovo.59, whole genome shotgun sequence	3418..3679		enterobacteriales	IncX1	95.76	377 / 377	DAQEOQ010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021574 SAMN37819520-rid19812983.denovo.58, whole genome shotgun sequence	1910..2286																																									avrA	DAQEOQ010000003.1	88552..89421	99.54	870	0						
GCA_032699385.1_PDT001940083.1_genomic.fna	Salmonella_enterica	0.5224	80.132 KB	18	aroC_139,dnaN_174,hemD_68,hisD_132,purE_133,sucA_9,thrA_168	578	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_139	dnaN	100	100	dnaN_174	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_133	sucA	100	100	sucA_9	thrA	100	100	thrA_168	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQEOR010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00027558 SAMN37819630-rid19810483.denovo.020, whole genome shotgun sequence	52358..52795	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQEOR010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00027558 SAMN37819630-rid19810483.guided.049, whole genome shotgun sequence	15517..15954	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEOR010000003.1	113510..114379	99.195	870	0						
GCA_032699405.1_PDT001940039.1_genomic.fna	Salmonella_enterica	0.5218	92.599 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEOS010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045469 SAMN37819843-rid19811093.denovo.006, whole genome shotgun sequence	117594..118031	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEOS010000119.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045469 SAMN37819843-rid19811093.guided.025, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEOS010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045469 SAMN37819843-rid19811093.denovo.014, whole genome shotgun sequence	48441..49083	enterobacteriales	IncFII(S)	100	262 / 262	DAQEOS010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045469 SAMN37819843-rid19811093.denovo.014, whole genome shotgun sequence	64168..64429																																																avrA	DAQEOS010000008.1	61112..61981	99.885	870	0						
GCA_032699425.1_PDT001940038.1_genomic.fna	Salmonella_enterica	0.5214	97.493 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEOU010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045476 SAMN37819844-rid19809163.denovo.007, whole genome shotgun sequence	52502..52939	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEOU010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045476 SAMN37819844-rid19809163.guided.010, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	90.84	131 / 131	DAQEOU010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045476 SAMN37819844-rid19809163.denovo.081, whole genome shotgun sequence	188..318	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEOU010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045476 SAMN37819844-rid19809163.denovo.034, whole genome shotgun sequence	48424..49066		enterobacteriales	IncFII(S)	100	262 / 262	DAQEOU010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045476 SAMN37819844-rid19809163.denovo.045, whole genome shotgun sequence	29464..29725																																									avrA	DAQEOU010000004.1	123419..124288	99.885	870	0						
GCA_032699445.1_PDT001940036.1_genomic.fna	Salmonella_enterica	0.5218	81.682 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEOT010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045495 SAMN37819846-rid19809153.denovo.021, whole genome shotgun sequence	20902..21339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEOT010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045495 SAMN37819846-rid19809153.guided.022, whole genome shotgun sequence	14129..14566	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEOT010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045495 SAMN37819846-rid19809153.denovo.011, whole genome shotgun sequence	48436..49078	enterobacteriales	IncFII(S)	100	262 / 262	DAQEOT010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045495 SAMN37819846-rid19809153.denovo.011, whole genome shotgun sequence	64163..64424																																																avrA	DAQEOT010000004.1	108150..109019	99.885	870	0						
GCA_032699465.1_PDT001940029.1_genomic.fna	Salmonella_enterica	0.522	92.885 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEOV010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045554 SAMN37819852-rid19811083.denovo.026, whole genome shotgun sequence	12461..12898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEOV010000105.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045554 SAMN37819852-rid19811083.guided.060, whole genome shotgun sequence	10156..10593	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEOV010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045554 SAMN37819852-rid19811083.denovo.081, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEOV010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045554 SAMN37819852-rid19811083.denovo.014, whole genome shotgun sequence	48411..49053		enterobacteriales	IncFII(S)	100	262 / 262	DAQEOV010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045554 SAMN37819852-rid19811083.denovo.014, whole genome shotgun sequence	64138..64399																																									avrA	DAQEOV010000011.1	107922..108791	99.885	870	0						
GCA_032699485.1_PDT001939996.1_genomic.fna	Salmonella_enterica	0.5226	70.78 KB	25	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_1113,thrA_2	7910	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_1113	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEOW010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046510 SAMN37819968-rid19811073.denovo.002, whole genome shotgun sequence	12531..12968	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEOW010000136.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046510 SAMN37819968-rid19811073.guided.071, whole genome shotgun sequence	14963..15400	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEOW010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046510 SAMN37819968-rid19811073.denovo.010, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQEOW010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046510 SAMN37819968-rid19811073.denovo.010, whole genome shotgun sequence	60371..60632																																																avrA	DAQEOW010000006.1	39625..40494	99.885	870	0						
GCA_032699505.1_PDT001939971.1_genomic.fna	Salmonella_enterica	0.5215	258.786 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEOX010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023450 SAMN37819565-rid19807733.denovo.04, whole genome shotgun sequence	44035..44472	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEOX010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023450 SAMN37819565-rid19807733.guided.24, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEOX010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023450 SAMN37819565-rid19807733.denovo.22, whole genome shotgun sequence	48417..49059	enterobacteriales	IncFII(S)	100	262 / 262	DAQEOX010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023450 SAMN37819565-rid19807733.denovo.22, whole genome shotgun sequence	4164..4425																																																avrA	DAQEOX010000006.1	60984..61853	99.54	870	0						
GCA_032699525.1_PDT001939951.1_genomic.fna	Salmonella_enterica	0.5217	93.835 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEOY010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048980 SAMN37820096-rid19809113.denovo.26, whole genome shotgun sequence	13083..13520	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEOY010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048980 SAMN37820096-rid19809113.guided.34, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEOY010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048980 SAMN37820096-rid19809113.denovo.73, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEOY010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048980 SAMN37820096-rid19809113.denovo.15, whole genome shotgun sequence	48431..49073		enterobacteriales	IncFII(S)	100	262 / 262	DAQEOY010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048980 SAMN37820096-rid19809113.denovo.15, whole genome shotgun sequence	64158..64419																																									avrA	DAQEOY010000006.1	108321..109190	99.885	870	0						
GCA_032699545.1_PDT001939884.1_genomic.fna	Salmonella_enterica	0.5195	254.711 KB	6	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	5	aac(6')-Iaa,aadA17,aac(6')-Iaa,aadA17,blaTEM-1C,blaTEM-1C,fosA7,fosA7,lnu(F),lnu(F)	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQEOZ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00041110 SAMN37819781-rid19809103.denovo.03, whole genome shotgun sequence	312431..312868	Amikacin, Tobramycin	NC_003197	aadA17	98.86	792/792	DAQEOZ010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00041110 SAMN37819781-rid19809103.denovo.44, whole genome shotgun sequence	1308..2099	Spectinomycin, Streptomycin	FJ460181	aac(6')-Iaa	97.26	438/438	DAQEOZ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00041110 SAMN37819781-rid19809103.guided.19, whole genome shotgun sequence	16457..16894	Amikacin, Tobramycin	NC_003197	aadA17	98.86	792/792	DAQEOZ010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00041110 SAMN37819781-rid19809103.guided.46, whole genome shotgun sequence	986..1777	Spectinomycin, Streptomycin	FJ460181	blaTEM-1C	100	861/861	DAQEOZ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00041110 SAMN37819781-rid19809103.denovo.32, whole genome shotgun sequence	1330..2190	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1C	100	861/861	DAQEOZ010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00041110 SAMN37819781-rid19809103.guided.33, whole genome shotgun sequence	1008..1868	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	fosA7	100	423/423	DAQEOZ010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00041110 SAMN37819781-rid19809103.denovo.05, whole genome shotgun sequence	166467..166889	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQEOZ010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00041110 SAMN37819781-rid19809103.guided.21, whole genome shotgun sequence	65025..65447	Fosfomycin	LAPJ01000014	lnu(F)	100	822/822	DAQEOZ010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00041110 SAMN37819781-rid19809103.denovo.44, whole genome shotgun sequence	2231..3052	Lincomycin	EU118119	lnu(F)	100	822/822	DAQEOZ010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00041110 SAMN37819781-rid19809103.guided.46, whole genome shotgun sequence	1909..2730	Lincomycin	EU118119																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQEOZ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00041110 SAMN37819781-rid19809103.denovo.32, whole genome shotgun sequence	12633..12774	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQEOZ010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00041110 SAMN37819781-rid19809103.guided.33, whole genome shotgun sequence	12311..12452																																																avrA	DAQEOZ010000001.1	556895..557764	99.54	870	0						
GCA_032699565.1_PDT001939809.1_genomic.fna	Salmonella_enterica	0.522	328.393 KB	6	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQEPC010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00023687 SAMN37819568-rid19809083.denovo.02, whole genome shotgun sequence	145114..145551	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQEPC010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00023687 SAMN37819568-rid19809083.guided.31, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	DAQEPC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00023687 SAMN37819568-rid19809083.denovo.01, whole genome shotgun sequence	343118..343540	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQEPC010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00023687 SAMN37819568-rid19809083.guided.25, whole genome shotgun sequence	34345..34767	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEPC010000003.1	108458..109327	99.425	870	0						
GCA_032699585.1_PDT001939834.1_genomic.fna	Salmonella_enterica	0.5223	78.433 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEPB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046854 SAMN37819999-rid19811003.denovo.001, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEPB010000124.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046854 SAMN37819999-rid19811003.guided.060, whole genome shotgun sequence	13705..14142	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQEPB010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046854 SAMN37819999-rid19811003.denovo.009, whole genome shotgun sequence	80987..81847	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQEPB010000125.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046854 SAMN37819999-rid19811003.guided.067, whole genome shotgun sequence	11774..12634	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	DAQEPB010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046854 SAMN37819999-rid19811003.denovo.009, whole genome shotgun sequence	75349..76164	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQEPB010000125.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046854 SAMN37819999-rid19811003.guided.067, whole genome shotgun sequence	6136..6951	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFIB(S)	100	643 / 643	DAQEPB010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046854 SAMN37819999-rid19811003.denovo.014, whole genome shotgun sequence	48407..49049	enterobacteriales	IncFII(S)	100	262 / 262	DAQEPB010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046854 SAMN37819999-rid19811003.denovo.014, whole genome shotgun sequence	64134..64395		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQEPB010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046854 SAMN37819999-rid19811003.denovo.009, whole genome shotgun sequence	90610..90751		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQEPB010000125.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046854 SAMN37819999-rid19811003.guided.067, whole genome shotgun sequence	21397..21538																																		avrA	DAQEPB010000007.1	105061..105930	99.885	870	0						
GCA_032699605.1_PDT001930708.1_genomic.fna	Salmonella_enterica	0.5207	478.749 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVNZ010000001.1 Salmonella enterica strain PNUSAS391008 SAMN37808948-rid19737773.denovo.01, whole genome shotgun sequence	774555..774992	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVNZ010000025.1 Salmonella enterica strain PNUSAS391008 SAMN37808948-rid19737773.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVNZ010000013.1 Salmonella enterica strain PNUSAS391008 SAMN37808948-rid19737773.denovo.15, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNVNZ010000013.1 Salmonella enterica strain PNUSAS391008 SAMN37808948-rid19737773.denovo.15, whole genome shotgun sequence	53092..53353																																																avrA	ABNVNZ010000002.1	585348..586217	99.54	870	0						
GCA_032699625.1_PDT001930717.1_genomic.fna	Salmonella_enterica	0.5204	279.77 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVNY010000001.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNVNY010000032.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.denovo.34, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNVNY010000032.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.denovo.34, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNVNY010000049.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.denovo.57, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVNY010000049.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.denovo.57, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNVNY010000062.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.guided.11, whole genome shotgun sequence	42353..42790	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNVNY010000066.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.guided.38, whole genome shotgun sequence	6042..6833	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNVNY010000067.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.guided.40, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNVNY010000069.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.guided.56, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVNY010000069.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.guided.56, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNVNY010000047.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.denovo.54, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNVNY010000070.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.guided.58, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABNVNY010000032.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.denovo.34, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNVNY010000040.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.denovo.46, whole genome shotgun sequence	1107..2320	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABNVNY010000066.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.guided.38, whole genome shotgun sequence	7095..8354	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNVNY010000067.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.guided.40, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNVNY010000068.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.guided.51, whole genome shotgun sequence	750..1963	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNVNY010000071.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.guided.62, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNVNY010000072.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.guided.63, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNVNY010000073.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.guided.64, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNVNY010000074.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.guided.65, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNVNY010000031.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.denovo.33, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNVNY010000032.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.denovo.34, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNVNY010000065.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.guided.37, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNVNY010000067.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.guided.40, whole genome shotgun sequence	4527..6446	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABNVNY010000032.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.denovo.34, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABNVNY010000066.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.guided.38, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																															enterobacteriales	Col156	94.81	154 / 154	ABNVNY010000035.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.denovo.41, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABNVNY010000041.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.denovo.47, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABNVNY010000048.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.denovo.55, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNVNY010000027.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.denovo.29, whole genome shotgun sequence	19810..20491		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNVNY010000022.1 Salmonella enterica strain PNUSAS391007 SAMN37808951-rid19733713.denovo.23, whole genome shotgun sequence	55745..56241																											avrA	ABNVNY010000002.1	508765..509634	99.885	870	0						
GCA_032699685.1_PDT001939854.1_genomic.fna	Salmonella_enterica	0.522	61.085 KB	26	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEPD010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045848 SAMN37819895-rid19810403.denovo.019, whole genome shotgun sequence	20894..21331	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEPD010000147.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045848 SAMN37819895-rid19810403.guided.034, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEPD010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045848 SAMN37819895-rid19810403.denovo.043, whole genome shotgun sequence	43069..43711	enterobacteriales	IncFII(S)	100	262 / 262	DAQEPD010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045848 SAMN37819895-rid19810403.denovo.047, whole genome shotgun sequence	29405..29666		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEPD010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045848 SAMN37819895-rid19810403.denovo.075, whole genome shotgun sequence	4622..4758																																									avrA	DAQEPD010000004.1	105240..106109	99.885	870	0						
GCA_032699705.1_PDT001939799.1_genomic.fna	Salmonella_enterica	0.5216	159.043 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEPE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049339 SAMN37820117-rid19809063.denovo.01, whole genome shotgun sequence	379596..380033	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEPE010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049339 SAMN37820117-rid19809063.guided.12, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	100	643 / 643	DAQEPE010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049339 SAMN37820117-rid19809063.denovo.17, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	DAQEPE010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049339 SAMN37820117-rid19809063.denovo.17, whole genome shotgun sequence	30404..30665																																																avrA	DAQEPE010000010.1	122835..123704	99.885	870	0						
GCA_032699725.1_PDT001930707.1_genomic.fna	Salmonella_enterica	0.52	458.588 KB	4	aroC_41,dnaN_42,hemD_299,hisD_58,purE_9,sucA_12,thrA_2	1606	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_299	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVOA010000001.1 Salmonella enterica strain PNUSAS390993 SAMN37808941-rid19733693.denovo.01, whole genome shotgun sequence	1071410..1071847	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNVOA010000037.1 Salmonella enterica strain PNUSAS390993 SAMN37808941-rid19733693.guided.11, whole genome shotgun sequence	44263..44700	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNVOA010000019.1 Salmonella enterica strain PNUSAS390993 SAMN37808941-rid19733693.denovo.21, whole genome shotgun sequence	12241..12883																																																						avrA	ABNVOA010000004.1	171384..172252	99.31	870	0						
GCA_032699745.1_PDT001930705.1_genomic.fna	Salmonella_enterica	0.5203	430.47 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVOB010000001.1 Salmonella enterica strain PNUSAS391009 SAMN37808943-rid19737753.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVOB010000044.1 Salmonella enterica strain PNUSAS391009 SAMN37808943-rid19737753.guided.10, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVOB010000002.1	504334..505204	99.196	871	0						
GCA_032699755.1_PDT001939877.1_genomic.fna	Salmonella_enterica	0.5212	129.448 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEPA010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045714 SAMN37819874-rid19811013.denovo.02, whole genome shotgun sequence	145233..145670	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEPA010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045714 SAMN37819874-rid19811013.guided.27, whole genome shotgun sequence	26798..27235	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEPA010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045714 SAMN37819874-rid19811013.denovo.16, whole genome shotgun sequence	48407..49049	enterobacteriales	IncFII(S)	100	262 / 262	DAQEPA010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045714 SAMN37819874-rid19811013.denovo.16, whole genome shotgun sequence	64134..64395		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEPA010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045714 SAMN37819874-rid19811013.denovo.39, whole genome shotgun sequence	21119..21255																																									avrA	DAQEPA010000004.1	108290..109159	99.885	870	0						
GCA_032699785.1_PDT001930704.1_genomic.fna	Salmonella_enterica	0.522	225.563 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVOC010000001.1 Salmonella enterica strain PNUSAS391223 SAMN37808956-rid19739183.denovo.01, whole genome shotgun sequence	482681..483118	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVOC010000045.1 Salmonella enterica strain PNUSAS391223 SAMN37808956-rid19739183.guided.31, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVOC010000030.1 Salmonella enterica strain PNUSAS391223 SAMN37808956-rid19739183.denovo.30, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNVOC010000030.1 Salmonella enterica strain PNUSAS391223 SAMN37808956-rid19739183.denovo.30, whole genome shotgun sequence	9325..9586																																																avrA	ABNVOC010000003.1	175008..175877	99.885	870	0						
GCA_032699805.1_PDT001930703.1_genomic.fna	Salmonella_enterica	0.5207	228.2 KB	6	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNVOE010000001.1 Salmonella enterica strain PNUSAS391228 SAMN37808958-rid19737743.denovo.01, whole genome shotgun sequence	508191..508628	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNVOE010000042.1 Salmonella enterica strain PNUSAS391228 SAMN37808958-rid19737743.guided.30, whole genome shotgun sequence	16450..16887	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNVOE010000034.1 Salmonella enterica strain PNUSAS391228 SAMN37808958-rid19737743.denovo.37, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNVOE010000045.1 Salmonella enterica strain PNUSAS391228 SAMN37808958-rid19737743.guided.40, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNVOE010000034.1 Salmonella enterica strain PNUSAS391228 SAMN37808958-rid19737743.denovo.37, whole genome shotgun sequence	1150..1280																																																						avrA	ABNVOE010000012.1	137718..138587	99.425	870	0						
GCA_032699825.1_PDT001930701.1_genomic.fna	Salmonella_enterica	0.5215	443.924 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVOF010000001.1 Salmonella enterica strain PNUSAS391010 SAMN37808953-rid19737733.denovo.01, whole genome shotgun sequence	826107..826544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVOF010000032.1 Salmonella enterica strain PNUSAS391010 SAMN37808953-rid19737733.guided.11, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVOF010000003.1	183129..183998	98.966	870	0						
GCA_032699845.1_PDT001930702.1_genomic.fna	Salmonella_enterica	0.5213	682.666 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNVOD010000001.1 Salmonella enterica strain PNUSAS391002 SAMN37808946-rid19733683.denovo.01, whole genome shotgun sequence	510592..511029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNVOD010000020.1 Salmonella enterica strain PNUSAS391002 SAMN37808946-rid19733683.guided.17, whole genome shotgun sequence	843..1280	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVOD010000002.1	544607..545475	99.425	870	0						
GCA_032699865.1_PDT001930699.1_genomic.fna	Salmonella_enterica	0.5214	776.111 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVOG010000001.1 Salmonella enterica strain PNUSAS391012 SAMN37808950-rid19739173.denovo.01, whole genome shotgun sequence	613387..613824	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVOG010000029.1 Salmonella enterica strain PNUSAS391012 SAMN37808950-rid19739173.guided.22, whole genome shotgun sequence	2475..2912	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVOG010000009.1	93867..94735	99.195	870	0						
GCA_032699885.1_PDT001930696.1_genomic.fna	Salmonella_enterica	0.5212	485.845 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVOJ010000001.1 Salmonella enterica strain PNUSAS391003 SAMN37808949-rid19737703.denovo.01, whole genome shotgun sequence	383862..384299	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVOJ010000048.1 Salmonella enterica strain PNUSAS391003 SAMN37808949-rid19737703.guided.18, whole genome shotgun sequence	12394..12831	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.08	131 / 131	ABNVOJ010000021.1 Salmonella enterica strain PNUSAS391003 SAMN37808949-rid19737703.denovo.24, whole genome shotgun sequence	2275..2405																																																						avrA	ABNVOJ010000003.1	504085..504955	99.196	871	0						
GCA_032699905.1_PDT001930698.1_genomic.fna	Salmonella_enterica	0.521	603.051 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNVOH010000001.1 Salmonella enterica strain PNUSAS390992 SAMN37808947-rid19737723.denovo.01, whole genome shotgun sequence	46753..47190	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNVOH010000022.1 Salmonella enterica strain PNUSAS390992 SAMN37808947-rid19737723.guided.11, whole genome shotgun sequence	34008..34445	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVOH010000002.1	544530..545398	99.31	870	0						
GCA_032699925.1_PDT001930697.1_genomic.fna	Salmonella_enterica	0.5209	695.793 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNVOI010000001.1 Salmonella enterica strain PNUSAS391011 SAMN37808952-rid19737713.denovo.01, whole genome shotgun sequence	596592..597029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNVOI010000018.1 Salmonella enterica strain PNUSAS391011 SAMN37808952-rid19737713.guided.08, whole genome shotgun sequence	40164..40601	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVOI010000003.1	544607..545475	99.425	870	0						
GCA_032699945.1_PDT001930694.1_genomic.fna	Salmonella_enterica	0.519	268.454 KB	6	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36*,thrA_41	80*	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	99.8003992015968	100	sucA_36*	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVOK010000002.1 Salmonella enterica strain PNUSAS390997 SAMN37808944-rid19739163.denovo.02, whole genome shotgun sequence	612938..613375	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVOK010000053.1 Salmonella enterica strain PNUSAS390997 SAMN37808944-rid19739163.guided.27, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVOK010000001.1	179572..180441	99.31	870	0						
GCA_032699965.1_PDT001930693.1_genomic.fna	Salmonella_enterica	0.5214	162.303 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	Col(BS512),Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVOL010000001.1 Salmonella enterica strain PNUSAS391221 SAMN37808955-rid19737693.denovo.01, whole genome shotgun sequence	115023..115460	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVOL010000063.1 Salmonella enterica strain PNUSAS391221 SAMN37808955-rid19737693.guided.40, whole genome shotgun sequence	21012..21449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(BS512)	100	233 / 233	ABNVOL010000049.1 Salmonella enterica strain PNUSAS391221 SAMN37808955-rid19737693.denovo.52, whole genome shotgun sequence	451..683	enterobacteriales	Col156	96.1	154 / 154	ABNVOL010000048.1 Salmonella enterica strain PNUSAS391221 SAMN37808955-rid19737693.denovo.51, whole genome shotgun sequence	483..636																																																avrA	ABNVOL010000010.1	94133..95001	99.77	870	0						
GCA_032699985.1_PDT001790668.1_genomic.fna	Salmonella_enterica	0.5185	237.368 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVOO010000014.1 Salmonella enterica strain 23WA06CH01-S1 SAMN35989715-rid18558623.denovo.14, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVOO010000042.1 Salmonella enterica strain 23WA06CH01-S1 SAMN35989715-rid18558623.denovo.44, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNVOO010000042.1 Salmonella enterica strain 23WA06CH01-S1 SAMN35989715-rid18558623.denovo.44, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNVOO010000062.1 Salmonella enterica strain 23WA06CH01-S1 SAMN35989715-rid18558623.guided.47, whole genome shotgun sequence	870..1307	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVOO010000064.1 Salmonella enterica strain 23WA06CH01-S1 SAMN35989715-rid18558623.guided.50, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNVOO010000064.1 Salmonella enterica strain 23WA06CH01-S1 SAMN35989715-rid18558623.guided.50, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNVOO010000044.1 Salmonella enterica strain 23WA06CH01-S1 SAMN35989715-rid18558623.denovo.46, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNVOO010000063.1 Salmonella enterica strain 23WA06CH01-S1 SAMN35989715-rid18558623.guided.48, whole genome shotgun sequence	4199..5404	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNVOO010000035.1 Salmonella enterica strain 23WA06CH01-S1 SAMN35989715-rid18558623.denovo.37, whole genome shotgun sequence	1824..2505	enterobacteriales	IncFII	96.95	262 / 261	ABNVOO010000042.1 Salmonella enterica strain 23WA06CH01-S1 SAMN35989715-rid18558623.denovo.44, whole genome shotgun sequence	5800..6061		enterobacteriales	IncFII	96.95	262 / 261	ABNVOO010000064.1 Salmonella enterica strain 23WA06CH01-S1 SAMN35989715-rid18558623.guided.50, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNVOO010000027.1 Salmonella enterica strain 23WA06CH01-S1 SAMN35989715-rid18558623.denovo.28, whole genome shotgun sequence	33445..33586		enterobacteriales	IncX1	100	373 / 373	ABNVOO010000041.1 Salmonella enterica strain 23WA06CH01-S1 SAMN35989715-rid18558623.denovo.43, whole genome shotgun sequence	2153..2525																											avrA	ABNVOO010000015.1	102634..103503	99.655	870	0						
GCA_032700005.1_PDT001930692.1_genomic.fna	Salmonella_enterica	0.5218	233.701 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVOM010000003.1 Salmonella enterica strain PNUSAS390995 SAMN37808730-rid19733653.denovo.03, whole genome shotgun sequence	62306..62743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVOM010000040.1 Salmonella enterica strain PNUSAS390995 SAMN37808730-rid19733653.guided.17, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032700045.1_PDT001790666.1_genomic.fna	Salmonella_enterica	0.5223	233.949 KB	6	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	-:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	2	ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	-	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVOP010000006.1 Salmonella enterica strain PNUSAS358453 SAMN35989171-rid18558603.denovo.06, whole genome shotgun sequence	145420..145857	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVOP010000029.1 Salmonella enterica strain PNUSAS358453 SAMN35989171-rid18558603.denovo.33, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVOP010000029.1 Salmonella enterica strain PNUSAS358453 SAMN35989171-rid18558603.denovo.33, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVOP010000029.1 Salmonella enterica strain PNUSAS358453 SAMN35989171-rid18558603.denovo.33, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVOP010000029.1 Salmonella enterica strain PNUSAS358453 SAMN35989171-rid18558603.denovo.33, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVOP010000029.1 Salmonella enterica strain PNUSAS358453 SAMN35989171-rid18558603.denovo.33, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNVOP010000044.1 Salmonella enterica strain PNUSAS358453 SAMN35989171-rid18558603.guided.27, whole genome shotgun sequence	6076..6513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVOP010000046.1 Salmonella enterica strain PNUSAS358453 SAMN35989171-rid18558603.guided.32, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVOP010000046.1 Salmonella enterica strain PNUSAS358453 SAMN35989171-rid18558603.guided.32, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVOP010000046.1 Salmonella enterica strain PNUSAS358453 SAMN35989171-rid18558603.guided.32, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVOP010000046.1 Salmonella enterica strain PNUSAS358453 SAMN35989171-rid18558603.guided.32, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVOP010000046.1 Salmonella enterica strain PNUSAS358453 SAMN35989171-rid18558603.guided.32, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNVOP010000030.1 Salmonella enterica strain PNUSAS358453 SAMN35989171-rid18558603.denovo.35, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVOP010000047.1 Salmonella enterica strain PNUSAS358453 SAMN35989171-rid18558603.guided.34, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNVOP010000035.1 Salmonella enterica strain PNUSAS358453 SAMN35989171-rid18558603.denovo.40, whole genome shotgun sequence	805..997	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNVOP010000017.1 Salmonella enterica strain PNUSAS358453 SAMN35989171-rid18558603.denovo.17, whole genome shotgun sequence	76507..76648																																																avrA	ABNVOP010000011.1	139897..140766	99.655	870	0						
GCA_032700065.1_PDT001940362.1_genomic.fna	Salmonella_enterica	0.5218	137.651 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEPH010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00044433 SAMN37819808-rid19807853.denovo.04, whole genome shotgun sequence	93745..94182	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEPH010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00044433 SAMN37819808-rid19807853.guided.25, whole genome shotgun sequence	33754..34191	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEPH010000006.1	93808..94677	99.77	870	0						
GCA_032700075.1_PDT001940390.1_genomic.fna	Salmonella_enterica	0.5225	159.058 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEPG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041168 SAMN37819784-rid19813353.denovo.01, whole genome shotgun sequence	477883..478320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEPG010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041168 SAMN37819784-rid19813353.guided.16, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEPG010000003.1	149550..150419	99.77	870	0						
GCA_032700105.1_PDT001940407.1_genomic.fna	Salmonella_enterica	0.5207	96.993 KB	11	aroC_15,dnaN_126,hemD_101,hisD_88,purE_8,sucA_19,thrA_18	446	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_126	hemD	100	100	hemD_101	hisD	100	100	hisD_88	purE	100	100	purE_8	sucA	100	100	sucA_19	thrA	100	100	thrA_18	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQEPF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00028911 SAMN37819682-rid19810583.denovo.01, whole genome shotgun sequence	223675..224112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQEPF010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00028911 SAMN37819682-rid19810583.guided.31, whole genome shotgun sequence	42417..42854	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQEPF010000007.1	114527..115396	99.77	870	0						
GCA_032700125.1_PDT001940360.1_genomic.fna	Salmonella_enterica	0.5225	73.963 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aac(6')-Iaa,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.S83Y,parC_p.T57S	3	Col(pHAD28),ColRNAI,IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEPI010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00044669 SAMN37819810-rid19813323.denovo.027, whole genome shotgun sequence	12489..12926	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	DAQEPI010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00044669 SAMN37819810-rid19813323.denovo.036, whole genome shotgun sequence	1394..2185	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	DAQEPI010000119.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00044669 SAMN37819810-rid19813323.guided.084, whole genome shotgun sequence	10236..10673	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	DAQEPI010000121.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00044669 SAMN37819810-rid19813323.guided.091, whole genome shotgun sequence	1435..2226	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	DAQEPI010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00044669 SAMN37819810-rid19813323.denovo.036, whole genome shotgun sequence	2690..3529	Sulfamethoxazole	U12338	sul1	100	840/840	DAQEPI010000121.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00044669 SAMN37819810-rid19813323.guided.091, whole genome shotgun sequence	2731..3570	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQEPI010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00044669 SAMN37819810-rid19813323.denovo.036, whole genome shotgun sequence	16046..17245	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQEPI010000122.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00044669 SAMN37819810-rid19813323.guided.092, whole genome shotgun sequence	1866..3065	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.15	113 / 131	DAQEPI010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00044669 SAMN37819810-rid19813323.denovo.100, whole genome shotgun sequence	3243..3355	enterobacteriales	ColRNAI	90.08	131 / 130	DAQEPI010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00044669 SAMN37819810-rid19813323.denovo.098, whole genome shotgun sequence	4022..4152		enterobacteriales	IncFIB(pN55391)	100	560 / 560	DAQEPI010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00044669 SAMN37819810-rid19813323.denovo.063, whole genome shotgun sequence	9109..9668																																									avrA	DAQEPI010000029.1	61136..62005	99.655	870	0						
GCA_032700145.1_PDT001940340.1_genomic.fna	Salmonella_enterica	0.522	59.071 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEPJ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045899 SAMN37819915-rid19813303.denovo.022, whole genome shotgun sequence	12506..12943	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEPJ010000159.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045899 SAMN37819915-rid19813303.guided.043, whole genome shotgun sequence	33480..33917	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEPJ010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045899 SAMN37819915-rid19813303.denovo.126, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEPJ010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045899 SAMN37819915-rid19813303.denovo.041, whole genome shotgun sequence	43080..43722		enterobacteriales	IncFII(S)	100	262 / 262	DAQEPJ010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045899 SAMN37819915-rid19813303.denovo.044, whole genome shotgun sequence	29412..29673																																									avrA	DAQEPJ010000007.1	99986..100855	99.885	870	0						
GCA_032700165.1_ASM3270016v1_genomic.fna	Salmonella_enterica	0.519	4.784 MB	1	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	21	aadA2,aac(6')-Iaa,aph(4)-Ia,aadA5,aac(3)-IV,aac(6')-Ib-cr,blaNDM-9,blaCTX-M-14,blaOXA-1,fosA3,fosA3,mph(A),floR,catB3,OqxB,OqxA,ARR-3,sul1,sul1,sul2,dfrA12,dfrA17,bleO	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80R	3	IncHI2,IncHI2A,IncN	aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aadA2	100	792/792	CP103966.1 Salmonella enterica strain QT6365 chromosome, complete genome	1454120..1454911	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	98.63	438/438	CP103966.1 Salmonella enterica strain QT6365 chromosome, complete genome	2329644..2330081	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	83777..84802	Hygromycin	V01499	aadA5	100	789/789	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	33476..34264	Spectinomycin, Streptomycin	AF137361	aac(3)-IV	99.87	777/777	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	82772..83548	Gentamicin, Tobramycin	DQ241380	aac(6')-Ib-cr	100	600/600	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	68387..68986	Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin, Ciprofloxacin	DQ303918	blaNDM-9	100	813/813	CP103966.1 Salmonella enterica strain QT6365 chromosome, complete genome	1461030..1461842	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam, Temocillin	KC999080	blaCTX-M-14	100	876/876	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	77716..78591	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AF252622	blaOXA-1	100	831/831	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	67426..68256	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Piperacillin, Piperacillin+Tazobactam	HQ170510	fosA3	100	417/417	CP103966.1 Salmonella enterica strain QT6365 chromosome, complete genome	1450276..1450692	Fosfomycin	AB522970	fosA3	100	417/417	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	79727..80143	Fosfomycin	AB522970	mph(A)	100	906/906	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	72871..73776	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	92968..94181	Chloramphenicol, Florfenicol	AF118107	catB3	100	633/633	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	66656..67288	Chloramphenicol	U13880	OqxB	100	3153/3153	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	35811..38963	Chloramphenicol, Nalidixic acid, Ciprofloxacin, Trimethoprim	EU370913	OqxA	100	1176/1176	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	38987..40162	Chloramphenicol, Nalidixic acid, Ciprofloxacin, Trimethoprim	EU370913	ARR-3	100	453/453	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	66119..66571	Rifampicin	JF806499	sul1	100	840/840	CP103966.1 Salmonella enterica strain QT6365 chromosome, complete genome	1455416..1456255	Sulfamethoxazole	U12338	sul1	100	840/840	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	64716..65555	Sulfamethoxazole	U12338	sul2	100	816/816	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	89649..90464	Sulfamethoxazole	AY034138	dfrA12	100	498/498	CP103966.1 Salmonella enterica strain QT6365 chromosome, complete genome	1453215..1453712	Trimethoprim	AM040708	dfrA17	100	474/474	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	32872..33345	Trimethoprim	FJ460238	bleO	100	392/399	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	149640..150031	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																							gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80R	AGC -> AGA	S -> R	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	IncHI2	100	327 / 327	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	202005..202331	enterobacteriales	IncHI2A	99.52	630 / 630	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	211..840		enterobacteriales	IncN	100	514 / 514	CP103967.1 Salmonella enterica strain QT6365 plasmid pQT6365, complete sequence	166288..166801																																																				
GCA_032700185.1_PDT001940313.1_genomic.fna	Salmonella_enterica	0.5218	132.682 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEPO010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047414 SAMN37820026-rid19813243.denovo.02, whole genome shotgun sequence	12525..12962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEPO010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047414 SAMN37820026-rid19813243.guided.46, whole genome shotgun sequence	14407..14844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEPO010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047414 SAMN37820026-rid19813243.denovo.60, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEPO010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047414 SAMN37820026-rid19813243.denovo.17, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	DAQEPO010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047414 SAMN37820026-rid19813243.denovo.17, whole genome shotgun sequence	30407..30668																																									avrA	DAQEPO010000013.1	123510..124379	99.885	870	0						
GCA_032700205.1_PDT001940248.1_genomic.fna	Salmonella_enterica	0.5216	86.016 KB	18	aroC_454,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	1925	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_454	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEPN010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031007 SAMN37819709-rid19813173.denovo.05, whole genome shotgun sequence	17246..17683	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEPN010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031007 SAMN37819709-rid19813173.guided.33, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEPN010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031007 SAMN37819709-rid19813173.denovo.39, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQEPN010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031007 SAMN37819709-rid19813173.denovo.73, whole genome shotgun sequence	3423..3684																																																avrA	DAQEPN010000004.1	115326..116195	99.54	870	0						
GCA_032700225.1_PDT001940315.1_genomic.fna	Salmonella_enterica	0.5214	99.14 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col(pHAD28),IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEPL010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047183 SAMN37820024-rid19813253.denovo.024, whole genome shotgun sequence	15519..15956	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEPL010000115.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047183 SAMN37820024-rid19813253.guided.045, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQEPL010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047183 SAMN37820024-rid19813253.denovo.087, whole genome shotgun sequence	3710..3840	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEPL010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047183 SAMN37820024-rid19813253.denovo.017, whole genome shotgun sequence	14689..15331		enterobacteriales	IncFII(S)	100	262 / 262	DAQEPL010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047183 SAMN37820024-rid19813253.denovo.017, whole genome shotgun sequence	30416..30677		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQEPL010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047183 SAMN37820024-rid19813253.denovo.066, whole genome shotgun sequence	3536..3677																																		avrA	DAQEPL010000007.1	107927..108796	99.885	870	0						
GCA_032700245.1_PDT001940198.1_genomic.fna	Salmonella_enterica	0.522	63.702 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEPM010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046035 SAMN37819928-rid19813103.denovo.068, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEPM010000144.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046035 SAMN37819928-rid19813103.guided.071, whole genome shotgun sequence	15515..15952	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEPM010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046035 SAMN37819928-rid19813103.denovo.011, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	DAQEPM010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046035 SAMN37819928-rid19813103.denovo.011, whole genome shotgun sequence	64139..64400		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEPM010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046035 SAMN37819928-rid19813103.denovo.050, whole genome shotgun sequence	22488..22624																																									avrA	DAQEPM010000018.1	39625..40494	99.885	870	0						
GCA_032700265.1_PDT001940312.1_genomic.fna	Salmonella_enterica	0.522	79.94 KB	21	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEPK010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047430 SAMN37820027-rid19810553.denovo.009, whole genome shotgun sequence	52489..52926	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEPK010000115.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047430 SAMN37820027-rid19810553.guided.037, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEPK010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047430 SAMN37820027-rid19810553.denovo.094, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEPK010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047430 SAMN37820027-rid19810553.denovo.012, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	DAQEPK010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047430 SAMN37820027-rid19810553.denovo.012, whole genome shotgun sequence	30407..30668		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQEPK010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047430 SAMN37820027-rid19810553.denovo.016, whole genome shotgun sequence	18898..19039																																		avrA	DAQEPK010000003.1	99929..100798	99.885	870	0						
GCA_032700285.1_PDT001940171.1_genomic.fna	Salmonella_enterica	0.5217	84.114 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_1113,thrA_2	7910	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_1113	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEPP010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046433 SAMN37819953-rid19813073.denovo.015, whole genome shotgun sequence	12528..12965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEPP010000113.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046433 SAMN37819953-rid19813073.guided.014, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEPP010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046433 SAMN37819953-rid19813073.denovo.016, whole genome shotgun sequence	48421..49063	enterobacteriales	IncFII(S)	100	262 / 262	DAQEPP010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046433 SAMN37819953-rid19813073.denovo.016, whole genome shotgun sequence	64148..64409																																																avrA	DAQEPP010000025.1	39625..40494	99.885	870	0						
GCA_032700305.1_PDT001940123.1_genomic.fna	Salmonella_enterica	0.5221	152.334 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEPQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00025329 SAMN37819596-rid19807773.denovo.01, whole genome shotgun sequence	302683..303120	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEPQ010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00025329 SAMN37819596-rid19807773.guided.36, whole genome shotgun sequence	24989..25426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEPQ010000010.1	60547..61416	99.655	870	0						
GCA_032700325.1_PDT001940160.1_genomic.fna	Salmonella_enterica	0.5215	149.696 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEPR010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048037 SAMN37820049-rid19809193.denovo.04, whole genome shotgun sequence	117593..118030	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEPR010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048037 SAMN37820049-rid19809193.guided.37, whole genome shotgun sequence	9246..9683	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEPR010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048037 SAMN37820049-rid19809193.denovo.17, whole genome shotgun sequence	44686..45328	enterobacteriales	IncFII(S)	100	262 / 262	DAQEPR010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048037 SAMN37820049-rid19809193.denovo.17, whole genome shotgun sequence	60413..60674																																																avrA	DAQEPR010000008.1	95171..96040	99.885	870	0						
GCA_032700345.1_PDT001940094.1_genomic.fna	Salmonella_enterica	0.5222	101.878 KB	15	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEPS010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027096 SAMN37819620-rid19812993.denovo.05, whole genome shotgun sequence	12523..12960	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEPS010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027096 SAMN37819620-rid19812993.guided.42, whole genome shotgun sequence	31351..31788	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEPS010000013.1	39430..40299	99.77	870	0						
GCA_032700365.1_PDT001940084.1_genomic.fna	Salmonella_enterica	0.5216	91.043 KB	17	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEPT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027557 SAMN37819629-rid19812973.denovo.001, whole genome shotgun sequence	50962..51399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEPT010000119.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027557 SAMN37819629-rid19812973.guided.030, whole genome shotgun sequence	10146..10583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEPT010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027557 SAMN37819629-rid19812973.denovo.089, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEPT010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027557 SAMN37819629-rid19812973.denovo.053, whole genome shotgun sequence	18064..18706		enterobacteriales	IncFII(S)	100	262 / 262	DAQEPT010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027557 SAMN37819629-rid19812973.denovo.053, whole genome shotgun sequence	3420..3681																																									avrA	DAQEPT010000006.1	43608..44477	99.54	870	0						
GCA_032700385.1_PDT001940066.1_genomic.fna	Salmonella_enterica	0.5214	194.432 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEPV010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00035907 SAMN37819732-rid19812943.denovo.03, whole genome shotgun sequence	20196..20633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEPV010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00035907 SAMN37819732-rid19812943.guided.38, whole genome shotgun sequence	2610..3047	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEPV010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00035907 SAMN37819732-rid19812943.denovo.28, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQEPV010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00035907 SAMN37819732-rid19812943.denovo.43, whole genome shotgun sequence	3404..3665																																																avrA	DAQEPV010000001.1	553073..553942	99.54	870	0						
GCA_032700405.1_PDT001940076.1_genomic.fna	Salmonella_enterica	0.5203	118.51 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEPU010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027860 SAMN37819637-rid19812963.denovo.02, whole genome shotgun sequence	89196..89633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEPU010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027860 SAMN37819637-rid19812963.guided.41, whole genome shotgun sequence	13198..13635	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEPU010000008.1	124066..124935	99.77	870	0						
GCA_032700425.1_PDT001940054.1_genomic.fna	Salmonella_enterica	0.5215	110.759 KB	13	aroC_17,dnaN_303,hemD_3,hisD_238,purE_199,sucA_10,thrA_12	1996	16:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_303	hemD	100	100	hemD_3	hisD	100	100	hisD_238	purE	100	100	purE_199	sucA	100	100	sucA_10	thrA	100	100	thrA_12	16	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Hull		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQEPW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hull isolate AUSMDU00037563 SAMN37819743-rid19812923.denovo.01, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQEPW010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hull isolate AUSMDU00037563 SAMN37819743-rid19812923.guided.25, whole genome shotgun sequence	42431..42868	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEPW010000024.1	39483..40352	99.54	870	0						
GCA_032700445.1_PDT001940024.1_genomic.fna	Salmonella_enterica	0.5213	229.192 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEPX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045571 SAMN37819857-rid19812893.denovo.01, whole genome shotgun sequence	145228..145665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEPX010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045571 SAMN37819857-rid19812893.guided.25, whole genome shotgun sequence	2406..2843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEPX010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045571 SAMN37819857-rid19812893.denovo.44, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEPX010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045571 SAMN37819857-rid19812893.denovo.17, whole genome shotgun sequence	48411..49053		enterobacteriales	IncFII(S)	100	262 / 262	DAQEPX010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045571 SAMN37819857-rid19812893.denovo.17, whole genome shotgun sequence	64138..64399																																									avrA	DAQEPX010000003.1	208675..209544	99.885	870	0						
GCA_032700465.1_PDT001940019.1_genomic.fna	Salmonella_enterica	0.5219	68.436 KB	23	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEPZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045595 SAMN37819861-rid19812883.denovo.001, whole genome shotgun sequence	96906..97343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEPZ010000133.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045595 SAMN37819861-rid19812883.guided.059, whole genome shotgun sequence	18869..19306	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEPZ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045595 SAMN37819861-rid19812883.denovo.030, whole genome shotgun sequence	44740..45382	enterobacteriales	IncFII(S)	100	262 / 262	DAQEPZ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045595 SAMN37819861-rid19812883.denovo.030, whole genome shotgun sequence	29394..29655																																																avrA	DAQEPZ010000004.1	61077..61946	99.885	870	0						
GCA_032700485.1_PDT001939967.1_genomic.fna	Salmonella_enterica	0.5229	42.9 KB	38	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQB010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048727 SAMN37820081-rid19812823.denovo.009, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQB010000208.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048727 SAMN37820081-rid19812823.guided.130, whole genome shotgun sequence	7426..7863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQB010000128.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048727 SAMN37820081-rid19812823.denovo.128, whole genome shotgun sequence	8016..8658	enterobacteriales	IncFII(S)	100	262 / 262	DAQEQB010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048727 SAMN37820081-rid19812823.denovo.041, whole genome shotgun sequence	29393..29654																																																avrA	DAQEQB010000040.1	39625..40494	99.885	870	0						
GCA_032700505.1_PDT001939989.1_genomic.fna	Salmonella_enterica	0.5215	131.416 KB	10	aroC_183,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	568	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_183	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEPY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046693 SAMN37819975-rid19812853.denovo.01, whole genome shotgun sequence	207037..207474	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEPY010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046693 SAMN37819975-rid19812853.guided.35, whole genome shotgun sequence	24984..25421	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQEPY010000010.1	95251..96120	99.885	870	0						
GCA_032700525.1_PDT001939952.1_genomic.fna	Salmonella_enterica	0.5219	134.198 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQA010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048979 SAMN37820095-rid19811043.denovo.14, whole genome shotgun sequence	52519..52956	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQA010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048979 SAMN37820095-rid19811043.guided.34, whole genome shotgun sequence	31136..31573	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEQA010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048979 SAMN37820095-rid19811043.denovo.69, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQA010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048979 SAMN37820095-rid19811043.denovo.17, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	DAQEQA010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048979 SAMN37820095-rid19811043.denovo.17, whole genome shotgun sequence	30407..30668																																									avrA	DAQEQA010000002.1	105598..106467	99.885	870	0						
GCA_032700545.1_PDT001939949.1_genomic.fna	Salmonella_enterica	0.5227	185.517 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(BS512)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEQC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00023619 SAMN37819567-rid19812793.denovo.01, whole genome shotgun sequence	316754..317191	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEQC010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00023619 SAMN37819567-rid19812793.guided.38, whole genome shotgun sequence	1999..2436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(BS512)	100	233 / 233	DAQEQC010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00023619 SAMN37819567-rid19812793.denovo.44, whole genome shotgun sequence	400..632																																																						avrA	DAQEQC010000005.1	124163..125032	99.77	870	0						
GCA_032700565.1_PDT001939869.1_genomic.fna	Salmonella_enterica	0.5218	93.821 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045724 SAMN37819881-rid19803773.denovo.001, whole genome shotgun sequence	206863..207300	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQD010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045724 SAMN37819881-rid19803773.guided.018, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQD010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045724 SAMN37819881-rid19803773.denovo.013, whole genome shotgun sequence	48431..49073	enterobacteriales	IncFII(S)	100	262 / 262	DAQEQD010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045724 SAMN37819881-rid19803773.denovo.013, whole genome shotgun sequence	64158..64419																																																avrA	DAQEQD010000005.1	108304..109173	99.885	870	0						
GCA_032700585.1_PDT001939864.1_genomic.fna	Salmonella_enterica	0.5222	58.594 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQE010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045774 SAMN37819886-rid19810413.denovo.021, whole genome shotgun sequence	12550..12987	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQE010000165.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045774 SAMN37819886-rid19810413.guided.065, whole genome shotgun sequence	14781..15218	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQE010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045774 SAMN37819886-rid19810413.denovo.010, whole genome shotgun sequence	14689..15331	enterobacteriales	IncFII(S)	100	262 / 262	DAQEQE010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045774 SAMN37819886-rid19810413.denovo.010, whole genome shotgun sequence	30416..30677																																																avrA	DAQEQE010000006.1	108338..109207	99.885	870	0						
GCA_032700605.1_PDT001939837.1_genomic.fna	Salmonella_enterica	0.5224	91.332 KB	18	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	3	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1C,blaTEM-1C,blaTEM-1C,fosA7,fosA7	1	parC_p.T57S	1	IncFII	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQEQF010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046828 SAMN37819997-rid19812653.denovo.009, whole genome shotgun sequence	11354..11791	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQEQF010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046828 SAMN37819997-rid19812653.guided.054, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	blaTEM-1C	100	861/861	DAQEQF010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046828 SAMN37819997-rid19812653.denovo.023, whole genome shotgun sequence	54812..55672	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1C	100	861/861	DAQEQF010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046828 SAMN37819997-rid19812653.guided.068, whole genome shotgun sequence	14799..15659	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1C	99.77	861/861	DAQEQF010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046828 SAMN37819997-rid19812653.guided.087, whole genome shotgun sequence	1..861	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	fosA7	100	423/423	DAQEQF010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046828 SAMN37819997-rid19812653.denovo.006, whole genome shotgun sequence	102622..103044	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQEQF010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046828 SAMN37819997-rid19812653.guided.047, whole genome shotgun sequence	34136..34558	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																							parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII	96.18	262 / 261	DAQEQF010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046828 SAMN37819997-rid19812653.denovo.023, whole genome shotgun sequence	52209..52468																																																						avrA	DAQEQF010000007.1	98032..98901	99.425	870	0						
GCA_032700625.1_PDT001939857.1_genomic.fna	Salmonella_enterica	0.5225	58.507 KB	29	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQG010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045843 SAMN37819892-rid19812683.denovo.069, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQG010000165.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045843 SAMN37819892-rid19812683.guided.030, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQG010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045843 SAMN37819892-rid19812683.denovo.008, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQEQG010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045843 SAMN37819892-rid19812683.denovo.008, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEQG010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045843 SAMN37819892-rid19812683.denovo.010, whole genome shotgun sequence	15833..15969																																									avrA	DAQEQG010000017.1	39625..40494	99.885	870	0						
GCA_032700645.1_PDT001939780.1_genomic.fna	Salmonella_enterica	0.5209	92.756 KB	17	aroC_123,dnaN_73,hemD_97,hisD_121,purE_6,sucA_120,thrA_72	601	-:k:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	5	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col440I,IncFIA(HI1),IncFIB(K),IncR	aroC	100	100	aroC_123	dnaN	100	100	dnaN_73	hemD	100	100	hemD_97	hisD	100	100	hisD_121	purE	100	100	purE_6	sucA	100	100	sucA_120	thrA	100	100	thrA_72	-	k	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQEQJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00028833 SAMN37819673-rid19812573.denovo.001, whole genome shotgun sequence	99016..99453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQEQJ010000115.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00028833 SAMN37819673-rid19812573.guided.033, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.08	131 / 131	DAQEQJ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00028833 SAMN37819673-rid19812573.denovo.082, whole genome shotgun sequence	2737..2867	enterobacteriales	Col(pHAD28)	93.02	129 / 131	DAQEQJ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00028833 SAMN37819673-rid19812573.denovo.085, whole genome shotgun sequence	1435..1563		enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQEQJ010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00028833 SAMN37819673-rid19812573.denovo.086, whole genome shotgun sequence	547..675		enterobacteriales	Col440I	90.27	113 / 114	DAQEQJ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00028833 SAMN37819673-rid19812573.denovo.084, whole genome shotgun sequence	2178..2290		enterobacteriales	IncFIA(HI1)	99.48	388 / 388	DAQEQJ010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00028833 SAMN37819673-rid19812573.denovo.092, whole genome shotgun sequence	754..1141		enterobacteriales	IncFIB(K)	99.64	560 / 560	DAQEQJ010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00028833 SAMN37819673-rid19812573.denovo.069, whole genome shotgun sequence	7138..7697		enterobacteriales	IncR	100	251 / 251	DAQEQJ010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Galiema isolate AUSMDU00028833 SAMN37819673-rid19812573.denovo.049, whole genome shotgun sequence	5700..5950													avrA	DAQEQJ010000003.1	106221..107090	99.425	870	0						
GCA_032700665.1_PDT001939835.1_genomic.fna	Salmonella_enterica	0.5225	94.934 KB	16	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	-:r:1,2	3	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1C,blaTEM-1C,fosA7,fosA7	1	parC_p.T57S	1	IncFII	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQEQH010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046829 SAMN37819998-rid19812643.denovo.04, whole genome shotgun sequence	56181..56618	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQEQH010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046829 SAMN37819998-rid19812643.guided.68, whole genome shotgun sequence	9823..10260	Amikacin, Tobramycin	NC_003197	blaTEM-1C	100	861/861	DAQEQH010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046829 SAMN37819998-rid19812643.denovo.40, whole genome shotgun sequence	25052..25912	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1C	100	861/861	DAQEQH010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046829 SAMN37819998-rid19812643.guided.63, whole genome shotgun sequence	14799..15659	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	fosA7	100	423/423	DAQEQH010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046829 SAMN37819998-rid19812643.denovo.02, whole genome shotgun sequence	124073..124495	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQEQH010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046829 SAMN37819998-rid19812643.guided.66, whole genome shotgun sequence	12317..12739	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII	96.18	262 / 261	DAQEQH010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046829 SAMN37819998-rid19812643.denovo.40, whole genome shotgun sequence	22449..22708																																																						avrA	DAQEQH010000010.1	105340..106209	99.425	870	0						
GCA_032700685.1_PDT001939790.1_genomic.fna	Salmonella_enterica	0.522	82.272 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQI010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049534 SAMN37820125-rid19812583.denovo.011, whole genome shotgun sequence	38062..38499	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQI010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049534 SAMN37820125-rid19812583.guided.043, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQI010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049534 SAMN37820125-rid19812583.denovo.013, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	DAQEQI010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049534 SAMN37820125-rid19812583.denovo.013, whole genome shotgun sequence	64139..64400																																																avrA	DAQEQI010000007.1	39625..40494	99.885	870	0						
GCA_032700705.1_PDT001930690.1_genomic.fna	Salmonella_enterica	0.5207	382.862 KB	4	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),ColpVC	aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNVOR010000001.1 Salmonella enterica strain PNUSAS390591 SAMN37808722-rid19733643.denovo.01, whole genome shotgun sequence	639689..640126	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNVOR010000032.1 Salmonella enterica strain PNUSAS390591 SAMN37808722-rid19733643.guided.22, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNVOR010000023.1 Salmonella enterica strain PNUSAS390591 SAMN37808722-rid19733643.denovo.26, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNVOR010000035.1 Salmonella enterica strain PNUSAS390591 SAMN37808722-rid19733643.guided.29, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNVOR010000023.1 Salmonella enterica strain PNUSAS390591 SAMN37808722-rid19733643.denovo.26, whole genome shotgun sequence	1150..1280	enterobacteriales	ColpVC	96.89	193 / 193	ABNVOR010000024.1 Salmonella enterica strain PNUSAS390591 SAMN37808722-rid19733643.denovo.27, whole genome shotgun sequence	1524..1716																																																avrA	ABNVOR010000010.1	137718..138587	99.425	870	0						
GCA_032700725.1_PDT001930691.1_genomic.fna	Salmonella_enterica	0.5199	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVOQ010000004.1 Salmonella enterica strain PNUSAS390998 SAMN37808727-rid19737683.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVOQ010000049.1 Salmonella enterica strain PNUSAS390998 SAMN37808727-rid19737683.guided.15, whole genome shotgun sequence	34793..35230	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	ABNVOQ010000016.1 Salmonella enterica strain PNUSAS390998 SAMN37808727-rid19737683.denovo.17, whole genome shotgun sequence	71401..71540																																																						avrA	ABNVOQ010000001.1	446578..447446	100	869	0						
GCA_032700745.1_PDT001930689.1_genomic.fna	Salmonella_enterica	0.5219	682.779 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNVOS010000001.1 Salmonella enterica strain PNUSAS390994 SAMN37808725-rid19739153.denovo.01, whole genome shotgun sequence	510588..511025	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNVOS010000022.1 Salmonella enterica strain PNUSAS390994 SAMN37808725-rid19739153.guided.19, whole genome shotgun sequence	711..1148	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVOS010000004.1	544607..545475	99.425	870	0						
GCA_032700765.1_PDT001930688.1_genomic.fna	Salmonella_enterica	0.5216	263.327 KB	7	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(BS512)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNVOT010000003.1 Salmonella enterica strain PNUSAS391225 SAMN37808721-rid19737673.denovo.03, whole genome shotgun sequence	307795..308232	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNVOT010000038.1 Salmonella enterica strain PNUSAS391225 SAMN37808721-rid19737673.guided.28, whole genome shotgun sequence	10910..11347	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(BS512)	100	233 / 233	ABNVOT010000032.1 Salmonella enterica strain PNUSAS391225 SAMN37808721-rid19737673.denovo.35, whole genome shotgun sequence	400..632																																																						avrA	ABNVOT010000009.1	100145..101014	98.966	870	0						
GCA_032700785.1_PDT001930687.1_genomic.fna	Salmonella_enterica	0.5197	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNVOU010000010.1 Salmonella enterica strain PNUSAS390999 SAMN37808724-rid19737663.denovo.10, whole genome shotgun sequence	29759..30193	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNVOU010000054.1 Salmonella enterica strain PNUSAS390999 SAMN37808724-rid19737663.guided.28, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																																						
GCA_032700805.1_PDT001930686.1_genomic.fna	Salmonella_enterica	0.5216	225.627 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVOV010000003.1 Salmonella enterica strain PNUSAS391001 SAMN37808728-rid19737653.denovo.03, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVOV010000038.1 Salmonella enterica strain PNUSAS391001 SAMN37808728-rid19737653.guided.23, whole genome shotgun sequence	21304..21741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVOV010000019.1 Salmonella enterica strain PNUSAS391001 SAMN37808728-rid19737653.denovo.19, whole genome shotgun sequence	36050..36692	enterobacteriales	IncFII(S)	100	262 / 262	ABNVOV010000019.1 Salmonella enterica strain PNUSAS391001 SAMN37808728-rid19737653.denovo.19, whole genome shotgun sequence	51777..52038																																																avrA	ABNVOV010000001.1	538462..539331	99.885	870	0						
GCA_032700825.1_PDT001930684.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVOX010000001.1 Salmonella enterica strain PNUSAS391004 SAMN37808726-rid19739143.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVOX010000019.1 Salmonella enterica strain PNUSAS391004 SAMN37808726-rid19739143.guided.16, whole genome shotgun sequence	2913..3350	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVOX010000012.1 Salmonella enterica strain PNUSAS391004 SAMN37808726-rid19739143.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNVOX010000014.1 Salmonella enterica strain PNUSAS391004 SAMN37808726-rid19739143.denovo.14, whole genome shotgun sequence	3402..3663																																																avrA	ABNVOX010000002.1	553636..554505	99.54	870	0						
GCA_032700845.1_PDT001930685.1_genomic.fna	Salmonella_enterica	0.5217	386.587 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNVOW010000001.1 Salmonella enterica strain PNUSAS391226 SAMN37808723-rid19737643.denovo.01, whole genome shotgun sequence	870861..871298	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNVOW010000019.1 Salmonella enterica strain PNUSAS391226 SAMN37808723-rid19737643.guided.18, whole genome shotgun sequence	5231..5668	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVOW010000005.1	179088..179956	99.425	870	0						
GCA_032700865.1_PDT001930682.1_genomic.fna	Salmonella_enterica	0.5212	263.997 KB	7	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(BS512),Col(pHAD28)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVOY010000001.1 Salmonella enterica strain PNUSAS391227 SAMN37808720-rid19733633.denovo.01, whole genome shotgun sequence	397850..398287	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVOY010000050.1 Salmonella enterica strain PNUSAS391227 SAMN37808720-rid19733633.guided.28, whole genome shotgun sequence	14100..14537	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(BS512)	100	233 / 233	ABNVOY010000039.1 Salmonella enterica strain PNUSAS391227 SAMN37808720-rid19733633.denovo.43, whole genome shotgun sequence	400..632	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNVOY010000038.1 Salmonella enterica strain PNUSAS391227 SAMN37808720-rid19733633.denovo.42, whole genome shotgun sequence	173..303																																																avrA	ABNVOY010000015.1	62107..62976	99.54	870	0						
GCA_032700885.1_PDT001930683.1_genomic.fna	Salmonella_enterica	0.5198	246.29 KB	7	aroC_42,dnaN_11,hemD_48,hisD_149,purE_12,sucA_13,thrA_4	1575	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVOZ010000001.1 Salmonella enterica strain PNUSAS390996 SAMN37808729-rid19737633.denovo.01, whole genome shotgun sequence	148202..148639	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVOZ010000079.1 Salmonella enterica strain PNUSAS390996 SAMN37808729-rid19737633.guided.14, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNVOZ010000032.1 Salmonella enterica strain PNUSAS390996 SAMN37808729-rid19737633.denovo.35, whole genome shotgun sequence	11447..12089	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNVOZ010000030.1 Salmonella enterica strain PNUSAS390996 SAMN37808729-rid19737633.denovo.33, whole genome shotgun sequence	18874..19456																																																											
GCA_032700905.1_PDT001930681.1_genomic.fna	Salmonella_enterica	0.522	202.82 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_644	3090	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_644	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVPA010000001.1 Salmonella enterica strain PNUSAS391000 SAMN37808719-rid19741863.denovo.01, whole genome shotgun sequence	368588..369025	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVPA010000049.1 Salmonella enterica strain PNUSAS391000 SAMN37808719-rid19741863.guided.21, whole genome shotgun sequence	16444..16881	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032700925.1_PDT001930680.1_genomic.fna	Salmonella_enterica	0.5209	424.031 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNVPC010000002.1 Salmonella enterica strain PNUSAS391005 SAMN37808718-rid19733623.denovo.02, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNVPC010000042.1 Salmonella enterica strain PNUSAS391005 SAMN37808718-rid19733623.guided.13, whole genome shotgun sequence	33879..34316	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVPC010000011.1	101941..102810	99.655	870	0						
GCA_032701005.1_PDT001790647.1_genomic.fna	Salmonella_enterica	0.5212	302.65 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFIB(pHCM2),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVPH010000004.1 Salmonella enterica strain PNUSAS358507 SAMN35989204-rid18558143.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVPH010000045.1 Salmonella enterica strain PNUSAS358507 SAMN35989204-rid18558143.guided.26, whole genome shotgun sequence	33503..33940	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVPH010000017.1 Salmonella enterica strain PNUSAS358507 SAMN35989204-rid18558143.denovo.17, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFIB(pHCM2)	98.4	875 / 875	ABNVPH010000015.1 Salmonella enterica strain PNUSAS358507 SAMN35989204-rid18558143.denovo.15, whole genome shotgun sequence	38916..39790		enterobacteriales	IncFII(S)	100	262 / 262	ABNVPH010000017.1 Salmonella enterica strain PNUSAS358507 SAMN35989204-rid18558143.denovo.17, whole genome shotgun sequence	30407..30668																																									avrA	ABNVPH010000002.1	176613..177481	100	869	0						
GCA_032701025.1_PDT001790648.1_genomic.fna	Salmonella_enterica	0.5213	303.555 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVPG010000001.1 Salmonella enterica strain PNUSAS358515 SAMN35989213-rid18558153.denovo.01, whole genome shotgun sequence	381662..382099	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVPG010000046.1 Salmonella enterica strain PNUSAS358515 SAMN35989213-rid18558153.guided.27, whole genome shotgun sequence	8088..8525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVPG010000004.1	175307..175910	100	604	0	avrA	ABNVPG010000004.1	175008..175316	99.032	310	2.39e-159
GCA_032701045.1_PDT001940405.1_genomic.fna	Salmonella_enterica	0.5221	105.909 KB	15	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	9,46:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	9,46	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	I 9,46:l,v:1,7	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQEQK010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00029122 SAMN37819684-rid19814613.denovo.30, whole genome shotgun sequence	15392..15829	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQEQK010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00029122 SAMN37819684-rid19814613.guided.31, whole genome shotgun sequence	14729..15166	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQEQK010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00029122 SAMN37819684-rid19814613.denovo.17, whole genome shotgun sequence	79863..80004																																																						avrA	DAQEQK010000004.1	106284..107153	98.966	870	0						
GCA_032701065.1_PDT001940300.1_genomic.fna	Salmonella_enterica	0.5209	305.822 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEQM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023061 SAMN37819561-rid19811193.denovo.01, whole genome shotgun sequence	293252..293689	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEQM010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023061 SAMN37819561-rid19811193.guided.15, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEQM010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023061 SAMN37819561-rid19811193.denovo.19, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	DAQEQM010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023061 SAMN37819561-rid19811193.denovo.24, whole genome shotgun sequence	3433..3694																																																avrA	DAQEQM010000008.1	140751..141620	99.54	870	0						
GCA_032701085.1_PDT001940352.1_genomic.fna	Salmonella_enterica	0.5226	61.792 KB	26	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQL010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045866 SAMN37819905-rid19806523.denovo.024, whole genome shotgun sequence	11315..11752	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQL010000147.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045866 SAMN37819905-rid19806523.guided.032, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQL010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045866 SAMN37819905-rid19806523.denovo.101, whole genome shotgun sequence	9061..9703	enterobacteriales	IncFII(S)	100	262 / 262	DAQEQL010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045866 SAMN37819905-rid19806523.denovo.044, whole genome shotgun sequence	29382..29643																																																avrA	DAQEQL010000001.1	106569..107438	99.885	870	0						
GCA_032701125.1_PDT001790665.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVPF010000001.1 Salmonella enterica strain PNUSAS358458 SAMN35989749-rid18558593.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVPF010000023.1 Salmonella enterica strain PNUSAS358458 SAMN35989749-rid18558593.guided.14, whole genome shotgun sequence	34152..34589	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVPF010000012.1 Salmonella enterica strain PNUSAS358458 SAMN35989749-rid18558593.denovo.13, whole genome shotgun sequence	40524..41166	enterobacteriales	IncFII(S)	100	262 / 262	ABNVPF010000016.1 Salmonella enterica strain PNUSAS358458 SAMN35989749-rid18558593.denovo.19, whole genome shotgun sequence	3395..3656																																																avrA	ABNVPF010000002.1	553636..554505	99.54	870	0						
GCA_032701145.1_PDT001940180.1_genomic.fna	Salmonella_enterica	0.5221	80.588 KB	22	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQS010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046291 SAMN37819945-rid19809203.denovo.030, whole genome shotgun sequence	15474..15911	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQS010000121.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046291 SAMN37819945-rid19809203.guided.042, whole genome shotgun sequence	37014..37451	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQS010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046291 SAMN37819945-rid19809203.denovo.014, whole genome shotgun sequence	48449..49091	enterobacteriales	IncFII(S)	100	262 / 262	DAQEQS010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046291 SAMN37819945-rid19809203.denovo.014, whole genome shotgun sequence	64176..64437																																																avrA	DAQEQS010000008.1	108239..109108	99.885	870	0						
GCA_032701165.1_PDT001940293.1_genomic.fna	Salmonella_enterica	0.521	130.006 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQN010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049564 SAMN37820130-rid19813223.denovo.02, whole genome shotgun sequence	145233..145670	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQN010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049564 SAMN37820130-rid19813223.guided.13, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQEQN010000011.1	39625..40494	99.885	870	0						
GCA_032701205.1_PDT001940200.1_genomic.fna	Salmonella_enterica	0.5222	79.949 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQO010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046031 SAMN37819927-rid19807793.denovo.009, whole genome shotgun sequence	12476..12913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQO010000121.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046031 SAMN37819927-rid19807793.guided.076, whole genome shotgun sequence	11553..11990	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQO010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046031 SAMN37819927-rid19807793.denovo.014, whole genome shotgun sequence	48413..49055	enterobacteriales	IncFII(S)	100	262 / 262	DAQEQO010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046031 SAMN37819927-rid19807793.denovo.014, whole genome shotgun sequence	64140..64401																																																avrA	DAQEQO010000025.1	61077..61946	99.885	870	0						
GCA_032701225.1_PDT001940193.1_genomic.fna	Salmonella_enterica	0.5219	68.558 KB	25	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQP010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046061 SAMN37819933-rid19811153.denovo.006, whole genome shotgun sequence	83666..84103	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQP010000134.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046061 SAMN37819933-rid19811153.guided.051, whole genome shotgun sequence	31798..32235	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQP010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046061 SAMN37819933-rid19811153.denovo.022, whole genome shotgun sequence	48418..49060	enterobacteriales	IncFII(S)	100	262 / 262	DAQEQP010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046061 SAMN37819933-rid19811153.denovo.022, whole genome shotgun sequence	64145..64406																																																avrA	DAQEQP010000011.1	61077..61946	99.885	870	0						
GCA_032701245.1_PDT001940191.1_genomic.fna	Salmonella_enterica	0.5209	90.26 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_345*,sucA_9,thrA_2	Unknown	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI(Gamma),IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	99.749373433584	100	purE_345*	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQQ010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046074 SAMN37819935-rid19813083.denovo.007, whole genome shotgun sequence	20911..21348	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQQ010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046074 SAMN37819935-rid19813083.guided.044, whole genome shotgun sequence	26211..26648	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQQ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046074 SAMN37819935-rid19813083.denovo.017, whole genome shotgun sequence	48407..49049	enterobacteriales	IncFII(S)	100	262 / 262	DAQEQQ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046074 SAMN37819935-rid19813083.denovo.017, whole genome shotgun sequence	64134..64395		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEQQ010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046074 SAMN37819935-rid19813083.denovo.041, whole genome shotgun sequence	22488..22624		enterobacteriales	IncX4	99.86	712 / 712	DAQEQQ010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046074 SAMN37819935-rid19813083.denovo.046, whole genome shotgun sequence	74..785																																		avrA	DAQEQQ010000006.1	61077..61946	99.885	870	0						
GCA_032701265.1_PDT001940161.1_genomic.fna	Salmonella_enterica	0.5218	126.186 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQT010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048036 SAMN37820048-rid19813063.denovo.12, whole genome shotgun sequence	12528..12965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQT010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048036 SAMN37820048-rid19813063.guided.60, whole genome shotgun sequence	9246..9683	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEQT010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048036 SAMN37820048-rid19813063.denovo.72, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQT010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048036 SAMN37820048-rid19813063.denovo.15, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	DAQEQT010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048036 SAMN37820048-rid19813063.denovo.15, whole genome shotgun sequence	30407..30668																																									avrA	DAQEQT010000006.1	122131..123000	99.885	870	0						
GCA_032701285.1_PDT001940148.1_genomic.fna	Salmonella_enterica	0.5212	111.293 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQU010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048233 SAMN37820060-rid19811133.denovo.04, whole genome shotgun sequence	145472..145909	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQU010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048233 SAMN37820060-rid19811133.guided.10, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQU010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048233 SAMN37820060-rid19811133.denovo.16, whole genome shotgun sequence	44647..45289	enterobacteriales	IncFII(S)	100	262 / 262	DAQEQU010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048233 SAMN37820060-rid19811133.denovo.16, whole genome shotgun sequence	60374..60635																																																avrA	DAQEQU010000005.1	108308..109177	99.885	870	0						
GCA_032701295.1_PDT001940186.1_genomic.fna	Salmonella_enterica	0.5222	62.009 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQR010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046210 SAMN37819939-rid19814563.denovo.025, whole genome shotgun sequence	52486..52923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQR010000151.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046210 SAMN37819939-rid19814563.guided.076, whole genome shotgun sequence	7452..7889	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQR010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046210 SAMN37819939-rid19814563.denovo.017, whole genome shotgun sequence	36059..36701	enterobacteriales	IncFII(S)	100	262 / 262	DAQEQR010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046210 SAMN37819939-rid19814563.denovo.017, whole genome shotgun sequence	51786..52047																																																avrA	DAQEQR010000044.1	43814..44683	99.885	870	0						
GCA_032701325.1_PDT001940103.1_genomic.fna	Salmonella_enterica	0.5222	315.813 KB	7	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQEQV010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00025972 SAMN37819612-rid19809173.denovo.10, whole genome shotgun sequence	38306..38743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQEQV010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00025972 SAMN37819612-rid19809173.guided.19, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEQV010000003.1	125295..126164	98.966	870	0						
GCA_032701345.1_PDT001940056.1_genomic.fna	Salmonella_enterica	0.5219	212.808 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEQW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00037171 SAMN37819741-rid19807763.denovo.01, whole genome shotgun sequence	316723..317160	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEQW010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00037171 SAMN37819741-rid19807763.guided.15, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEQW010000003.1	149923..150792	99.77	870	0						
GCA_032701365.1_PDT001940014.1_genomic.fna	Salmonella_enterica	0.522	54.424 KB	28	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col(pHAD28),IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQX010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045621 SAMN37819866-rid19814503.denovo.074, whole genome shotgun sequence	12509..12946	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQX010000180.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045621 SAMN37819866-rid19814503.guided.029, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	90.84	131 / 131	DAQEQX010000139.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045621 SAMN37819866-rid19814503.denovo.142, whole genome shotgun sequence	188..318	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQX010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045621 SAMN37819866-rid19814503.denovo.009, whole genome shotgun sequence	48432..49074		enterobacteriales	IncFII(S)	100	262 / 262	DAQEQX010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045621 SAMN37819866-rid19814503.denovo.009, whole genome shotgun sequence	64159..64420		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQEQX010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045621 SAMN37819866-rid19814503.denovo.016, whole genome shotgun sequence	21508..21649																																		avrA	DAQEQX010000021.1	61077..61946	99.885	870	0						
GCA_032701385.1_PDT001939879.1_genomic.fna	Salmonella_enterica	0.5213	102.242 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045710 SAMN37819872-rid19802453.denovo.01, whole genome shotgun sequence	134062..134499	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQZ010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045710 SAMN37819872-rid19802453.guided.17, whole genome shotgun sequence	31809..32246	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQZ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045710 SAMN37819872-rid19802453.denovo.32, whole genome shotgun sequence	44738..45380	enterobacteriales	IncFII(S)	100	262 / 262	DAQEQZ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045710 SAMN37819872-rid19802453.denovo.32, whole genome shotgun sequence	29392..29653																																																avrA	DAQEQZ010000005.1	99962..100831	99.885	870	0						
GCA_032701405.1_PDT001939962.1_genomic.fna	Salmonella_enterica	0.5211	150.738 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEQY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048927 SAMN37820086-rid19812813.denovo.01, whole genome shotgun sequence	145315..145752	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEQY010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048927 SAMN37820086-rid19812813.guided.16, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQEQY010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048927 SAMN37820086-rid19812813.denovo.14, whole genome shotgun sequence	80502..81362	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQEQY010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048927 SAMN37820086-rid19812813.guided.33, whole genome shotgun sequence	12073..12933	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	DAQEQY010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048927 SAMN37820086-rid19812813.denovo.14, whole genome shotgun sequence	74864..75679	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQEQY010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048927 SAMN37820086-rid19812813.guided.33, whole genome shotgun sequence	17756..18571	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFIB(S)	100	643 / 643	DAQEQY010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048927 SAMN37820086-rid19812813.denovo.17, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQEQY010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048927 SAMN37820086-rid19812813.denovo.17, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQEQY010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048927 SAMN37820086-rid19812813.denovo.14, whole genome shotgun sequence	90125..90266		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQEQY010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048927 SAMN37820086-rid19812813.guided.33, whole genome shotgun sequence	3169..3310																																		avrA	DAQEQY010000007.1	122947..123816	99.885	870	0						
GCA_032701425.1_PDT001939874.1_genomic.fna	Salmonella_enterica	0.5214	102.432 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQERA010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045718 SAMN37819877-rid19809093.denovo.04, whole genome shotgun sequence	145172..145609	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQERA010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045718 SAMN37819877-rid19809093.guided.41, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQERA010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045718 SAMN37819877-rid19809093.denovo.23, whole genome shotgun sequence	36059..36701	enterobacteriales	IncFII(S)	100	262 / 262	DAQERA010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045718 SAMN37819877-rid19809093.denovo.23, whole genome shotgun sequence	51786..52047																																																avrA	DAQERA010000003.1	122026..122895	99.885	870	0						
GCA_032701445.1_PDT001939850.1_genomic.fna	Salmonella_enterica	0.5218	86.942 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQERB010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046743 SAMN37819985-rid19814433.denovo.058, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQERB010000116.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046743 SAMN37819985-rid19814433.guided.031, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQERB010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046743 SAMN37819985-rid19814433.denovo.015, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQERB010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046743 SAMN37819985-rid19814433.denovo.015, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQERB010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046743 SAMN37819985-rid19814433.denovo.017, whole genome shotgun sequence	15833..15969																																									avrA	DAQERB010000005.1	108280..109149	99.885	870	0						
GCA_032701465.1_PDT001939817.1_genomic.fna	Salmonella_enterica	0.522	102.432 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQERC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049076 SAMN37820101-rid19807693.denovo.001, whole genome shotgun sequence	133756..134193	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQERC010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049076 SAMN37820101-rid19807693.guided.039, whole genome shotgun sequence	14434..14871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQERC010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049076 SAMN37820101-rid19807693.denovo.015, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	DAQERC010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049076 SAMN37820101-rid19807693.denovo.015, whole genome shotgun sequence	64139..64400																																																avrA	DAQERC010000036.1	39625..40494	99.885	870	0						
GCA_032701485.1_PDT001939805.1_genomic.fna	Salmonella_enterica	0.5216	93.233 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQERD010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049226 SAMN37820111-rid19812593.denovo.003, whole genome shotgun sequence	15470..15907	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQERD010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049226 SAMN37820111-rid19812593.guided.010, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQERD010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049226 SAMN37820111-rid19812593.denovo.015, whole genome shotgun sequence	44645..45287	enterobacteriales	IncFII(S)	100	262 / 262	DAQERD010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049226 SAMN37820111-rid19812593.denovo.015, whole genome shotgun sequence	60372..60633																																																avrA	DAQERD010000011.1	107933..108802	99.885	870	0						
GCA_032701505.1_PDT001939800.1_genomic.fna	Salmonella_enterica	0.5215	93.834 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQERE010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049336 SAMN37820116-rid19810993.denovo.012, whole genome shotgun sequence	52484..52921	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQERE010000104.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049336 SAMN37820116-rid19810993.guided.016, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQERE010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049336 SAMN37820116-rid19810993.denovo.017, whole genome shotgun sequence	68521..69163	enterobacteriales	IncFII(S)	100	262 / 262	DAQERE010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049336 SAMN37820116-rid19810993.denovo.017, whole genome shotgun sequence	84248..84509																																																avrA	DAQERE010000004.1	106304..107173	99.885	870	0						
GCA_032701525.1_PDT001939797.1_genomic.fna	Salmonella_enterica	0.5218	82.134 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQERG010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049483 SAMN37820118-rid19809053.denovo.012, whole genome shotgun sequence	83587..84024	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQERG010000113.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049483 SAMN37820118-rid19809053.guided.026, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQERG010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049483 SAMN37820118-rid19809053.denovo.014, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	DAQERG010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049483 SAMN37820118-rid19809053.denovo.014, whole genome shotgun sequence	64139..64400																																																avrA	DAQERG010000038.1	39625..40494	99.885	870	0						
GCA_032701565.1_PDT001939795.1_genomic.fna	Salmonella_enterica	0.5211	180.035 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	ColRNAI,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQERF010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049517 SAMN37820120-rid19814423.denovo.03, whole genome shotgun sequence	206870..207307	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQERF010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049517 SAMN37820120-rid19814423.guided.28, whole genome shotgun sequence	35568..36005	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQERF010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049517 SAMN37820120-rid19814423.denovo.53, whole genome shotgun sequence	3010..3140	enterobacteriales	IncFIB(S)	100	643 / 643	DAQERF010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049517 SAMN37820120-rid19814423.denovo.17, whole genome shotgun sequence	48418..49060		enterobacteriales	IncFII(S)	100	262 / 262	DAQERF010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049517 SAMN37820120-rid19814423.denovo.17, whole genome shotgun sequence	64145..64406		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQERF010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049517 SAMN37820120-rid19814423.denovo.20, whole genome shotgun sequence	71622..71763																																		avrA	DAQERF010000006.1	39625..40494	99.885	870	0						
GCA_032701985.1_PDT001930642.1_genomic.fna	Salmonella_enterica	0.5223	341.618 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVQD010000001.1 Salmonella enterica strain PNUSAS391185 SAMN37807170-rid19724413.denovo.01, whole genome shotgun sequence	450493..450930	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVQD010000030.1 Salmonella enterica strain PNUSAS391185 SAMN37807170-rid19724413.guided.25, whole genome shotgun sequence	946..1383	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVQD010000002.1	39473..40342	98.966	870	0						
GCA_032702005.1_PDT001930641.1_genomic.fna	Salmonella_enterica	0.5211	246.372 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVQE010000001.1 Salmonella enterica strain PNUSAS391175 SAMN37807169-rid19725843.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVQE010000033.1 Salmonella enterica strain PNUSAS391175 SAMN37807169-rid19725843.guided.24, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNVQE010000024.1 Salmonella enterica strain PNUSAS391175 SAMN37807169-rid19725843.denovo.27, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNVQE010000026.1 Salmonella enterica strain PNUSAS391175 SAMN37807169-rid19725843.denovo.29, whole genome shotgun sequence	3406..3667																																																avrA	ABNVQE010000002.1	553077..553946	99.54	870	0						
GCA_032702025.1_PDT001930640.1_genomic.fna	Salmonella_enterica	0.5214	291.113 KB	6	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVQF010000002.1 Salmonella enterica strain PNUSAS391180 SAMN37807166-rid19737543.denovo.02, whole genome shotgun sequence	136546..136983	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVQF010000033.1 Salmonella enterica strain PNUSAS391180 SAMN37807166-rid19737543.guided.23, whole genome shotgun sequence	11600..12037	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVQF010000001.1	510165..511031	99.08	870	0						
GCA_032702065.1_PDT001930639.1_genomic.fna	Salmonella_enterica	0.5202	201.971 KB	6	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNVQG010000001.1 Salmonella enterica strain PNUSAS391182 SAMN37807171-rid19715453.denovo.01, whole genome shotgun sequence	382620..383057	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNVQG010000034.1 Salmonella enterica strain PNUSAS391182 SAMN37807171-rid19715453.guided.19, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABNVQG010000020.1 Salmonella enterica strain PNUSAS391182 SAMN37807171-rid19715453.denovo.21, whole genome shotgun sequence	38343..38765	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNVQG010000037.1 Salmonella enterica strain PNUSAS391182 SAMN37807171-rid19715453.guided.33, whole genome shotgun sequence	9197..9619	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.93	374 / 374	ABNVQG010000029.1 Salmonella enterica strain PNUSAS391182 SAMN37807171-rid19715453.denovo.32, whole genome shotgun sequence	8465..8838																																																						avrA	ABNVQG010000015.1	39349..40218	99.54	870	0						
GCA_032702085.1_PDT001790644.1_genomic.fna	Salmonella_enterica	0.5227	316.257 KB	6	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVQI010000003.1 Salmonella enterica strain PNUSAS358454 SAMN35989170-rid18558113.denovo.03, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVQI010000045.1 Salmonella enterica strain PNUSAS358454 SAMN35989170-rid18558113.guided.21, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032702105.1_PDT001940350.1_genomic.fna	Salmonella_enterica	0.5221	84.483 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQERH010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045879 SAMN37819907-rid19813313.denovo.003, whole genome shotgun sequence	145425..145862	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQERH010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045879 SAMN37819907-rid19813313.guided.036, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	98.96	193 / 193	DAQERH010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045879 SAMN37819907-rid19813313.denovo.084, whole genome shotgun sequence	805..997	enterobacteriales	IncFIB(S)	100	643 / 643	DAQERH010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045879 SAMN37819907-rid19813313.denovo.046, whole genome shotgun sequence	24671..25313		enterobacteriales	IncFII(S)	100	262 / 262	DAQERH010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045879 SAMN37819907-rid19813313.denovo.046, whole genome shotgun sequence	9325..9586																																									avrA	DAQERH010000005.1	108317..109186	99.885	870	0						
GCA_032702125.1_PDT001790643.1_genomic.fna	Salmonella_enterica	0.5207	209.049 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVQJ010000005.1 Salmonella enterica strain PNUSAS358448 SAMN35989176-rid18558103.denovo.05, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVQJ010000054.1 Salmonella enterica strain PNUSAS358448 SAMN35989176-rid18558103.guided.25, whole genome shotgun sequence	32286..32723	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVQJ010000001.1	446767..447635	100	869	0						
GCA_032702145.1_PDT001940335.1_genomic.fna	Salmonella_enterica	0.5209	163.536 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQERJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045904 SAMN37819919-rid19813293.denovo.01, whole genome shotgun sequence	207028..207465	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQERJ010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045904 SAMN37819919-rid19813293.guided.12, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQERJ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045904 SAMN37819919-rid19813293.denovo.16, whole genome shotgun sequence	48410..49052	enterobacteriales	IncFII(S)	100	262 / 262	DAQERJ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045904 SAMN37819919-rid19813293.denovo.16, whole genome shotgun sequence	64137..64398		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQERJ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045904 SAMN37819919-rid19813293.denovo.18, whole genome shotgun sequence	15829..15965																																									avrA	DAQERJ010000013.1	39625..40494	99.885	870	0						
GCA_032702165.1_PDT001940307.1_genomic.fna	Salmonella_enterica	0.5211	178.608 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQERI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047512 SAMN37820031-rid19805243.denovo.01, whole genome shotgun sequence	206854..207291	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQERI010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047512 SAMN37820031-rid19805243.guided.16, whole genome shotgun sequence	34213..34650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQERI010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047512 SAMN37820031-rid19805243.denovo.18, whole genome shotgun sequence	14689..15331	enterobacteriales	IncFII(S)	100	262 / 262	DAQERI010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047512 SAMN37820031-rid19805243.denovo.18, whole genome shotgun sequence	30416..30677																																																avrA	DAQERI010000007.1	122930..123799	99.885	870	0						
GCA_032702185.1_PDT001940305.1_genomic.fna	Salmonella_enterica	0.5223	90.26 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQERK010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047517 SAMN37820033-rid19806513.denovo.026, whole genome shotgun sequence	15482..15919	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQERK010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047517 SAMN37820033-rid19806513.guided.040, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQERK010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047517 SAMN37820033-rid19806513.denovo.016, whole genome shotgun sequence	43107..43749	enterobacteriales	IncFII(S)	100	262 / 262	DAQERK010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047517 SAMN37820033-rid19806513.denovo.016, whole genome shotgun sequence	58834..59095																																																avrA	DAQERK010000020.1	39625..40494	99.885	870	0						
GCA_032702205.1_PDT001940240.1_genomic.fna	Salmonella_enterica	0.5202	188.052 KB	9	aroC_454,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	1925	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col440I,IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_454	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQERM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031788 SAMN37819717-rid19805213.denovo.01, whole genome shotgun sequence	162472..162909	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQERM010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031788 SAMN37819717-rid19805213.guided.28, whole genome shotgun sequence	14226..14663	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col440I	94.74	114 / 114	DAQERM010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031788 SAMN37819717-rid19805213.denovo.48, whole genome shotgun sequence	1938..2051	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQERM010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031788 SAMN37819717-rid19805213.denovo.27, whole genome shotgun sequence	48112..48754		enterobacteriales	IncFII(S)	100	262 / 262	DAQERM010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031788 SAMN37819717-rid19805213.denovo.27, whole genome shotgun sequence	3859..4120		enterobacteriales	IncX1	95.76	377 / 377	DAQERM010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031788 SAMN37819717-rid19805213.denovo.32, whole genome shotgun sequence	34215..34591																																		avrA	DAQERM010000007.1	142398..143267	99.54	870	0						
GCA_032702225.1_PDT001940263.1_genomic.fna	Salmonella_enterica	0.5227	171.306 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQERL010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00029617 SAMN37819697-rid19813193.denovo.12, whole genome shotgun sequence	12561..12998	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQERL010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00029617 SAMN37819697-rid19813193.guided.34, whole genome shotgun sequence	26658..27095	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQERL010000015.1	124054..124923	99.77	870	0						
GCA_032702245.1_PDT001940131.1_genomic.fna	Salmonella_enterica	0.5206	438.687 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncFII(pCTU2),pESA2	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQERP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00024986 SAMN37819588-rid19813033.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQERP010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00024986 SAMN37819588-rid19813033.guided.17, whole genome shotgun sequence	22478..22915	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQERP010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00024986 SAMN37819588-rid19813033.denovo.19, whole genome shotgun sequence	40528..41170	enterobacteriales	IncFII(S)	100	262 / 262	DAQERP010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00024986 SAMN37819588-rid19813033.denovo.25, whole genome shotgun sequence	3412..3673		enterobacteriales	IncFII(pCTU2)	97.23	577 / 577	DAQERP010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00024986 SAMN37819588-rid19813033.denovo.23, whole genome shotgun sequence	4742..5318		enterobacteriales	pESA2	98.4	750 / 750	DAQERP010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00024986 SAMN37819588-rid19813033.denovo.23, whole genome shotgun sequence	21137..21886																																		avrA	DAQERP010000002.1	555025..555894	99.54	870	0						
GCA_032702265.1_PDT001940188.1_genomic.fna	Salmonella_enterica	0.5227	148.725 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQERN010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022579 SAMN37819551-rid19814573.denovo.22, whole genome shotgun sequence	20240..20677	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQERN010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022579 SAMN37819551-rid19814573.guided.26, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQERN010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022579 SAMN37819551-rid19814573.denovo.29, whole genome shotgun sequence	47160..47802	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQERN010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022579 SAMN37819551-rid19814573.denovo.47, whole genome shotgun sequence	9280..9539																																																avrA	DAQERN010000005.1	115327..116196	99.54	870	0						
GCA_032702285.1_PDT001940091.1_genomic.fna	Salmonella_enterica	0.521	264.221 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87Y	4	Col(pHAD28),Col(pHAD28),IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQERO010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.denovo.04, whole genome shotgun sequence	17288..17725	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQERO010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.denovo.37, whole genome shotgun sequence	10008..10838	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQERO010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.denovo.37, whole genome shotgun sequence	9199..10002	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	DAQERO010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.guided.25, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQERO010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.guided.57, whole genome shotgun sequence	842..1672	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQERO010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.guided.57, whole genome shotgun sequence	33..836	Streptomycin	AF321551	blaTEM-1B	99.88	861/861	DAQERO010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.guided.47, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQERO010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.guided.48, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	DAQERO010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.denovo.37, whole genome shotgun sequence	8323..9138	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQERO010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.guided.56, whole genome shotgun sequence	1730..2545	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQERO010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.denovo.54, whole genome shotgun sequence	947..2146	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQERO010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.guided.52, whole genome shotgun sequence	988..2187	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQERO010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.denovo.40, whole genome shotgun sequence	3660..3790	enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQERO010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.denovo.40, whole genome shotgun sequence	1480..1610		enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQERO010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.denovo.27, whole genome shotgun sequence	33327..33969		enterobacteriales	IncFII(S)	100	262 / 262	DAQERO010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.denovo.41, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	95.76	377 / 377	DAQERO010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027297 SAMN37819623-rid19814523.denovo.39, whole genome shotgun sequence	1910..2286																											avrA	DAQERO010000005.1	115346..116215	99.54	870	0						
GCA_032702305.1_PDT001940064.1_genomic.fna	Salmonella_enterica	0.5212	168.487 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQERQ010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036148 SAMN37819734-rid19812933.denovo.24, whole genome shotgun sequence	17246..17683	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQERQ010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036148 SAMN37819734-rid19812933.guided.28, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQERQ010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036148 SAMN37819734-rid19812933.denovo.30, whole genome shotgun sequence	40529..41171	enterobacteriales	IncFII(S)	100	262 / 262	DAQERQ010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036148 SAMN37819734-rid19812933.denovo.47, whole genome shotgun sequence	3415..3676																																																avrA	DAQERQ010000004.1	140958..141827	99.54	870	0						
GCA_032702325.1_PDT001939957.1_genomic.fna	Salmonella_enterica	0.5213	96.243 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQERT010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048969 SAMN37820090-rid19812803.denovo.003, whole genome shotgun sequence	145279..145716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQERT010000104.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048969 SAMN37820090-rid19812803.guided.014, whole genome shotgun sequence	10462..10899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQERT010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048969 SAMN37820090-rid19812803.denovo.015, whole genome shotgun sequence	44666..45308	enterobacteriales	IncFII(S)	100	262 / 262	DAQERT010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048969 SAMN37820090-rid19812803.denovo.015, whole genome shotgun sequence	60393..60654																																																avrA	DAQERT010000005.1	106481..107350	99.885	870	0						
GCA_032702345.1_PDT001940048.1_genomic.fna	Salmonella_enterica	0.5209	252.678 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncFII(pCTU2),pESA2	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQERR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038038 SAMN37819748-rid19807753.denovo.01, whole genome shotgun sequence	193568..194005	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQERR010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038038 SAMN37819748-rid19807753.guided.23, whole genome shotgun sequence	44289..44726	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQERR010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038038 SAMN37819748-rid19807753.denovo.22, whole genome shotgun sequence	48444..49086	enterobacteriales	IncFII(S)	100	262 / 262	DAQERR010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038038 SAMN37819748-rid19807753.denovo.22, whole genome shotgun sequence	4191..4452		enterobacteriales	IncFII(pCTU2)	97.23	577 / 577	DAQERR010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038038 SAMN37819748-rid19807753.denovo.32, whole genome shotgun sequence	4742..5318		enterobacteriales	pESA2	98.4	750 / 750	DAQERR010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038038 SAMN37819748-rid19807753.denovo.32, whole genome shotgun sequence	21137..21886																																		avrA	DAQERR010000009.1	140795..141664	99.54	870	0						
GCA_032702355.1_PDT001939959.1_genomic.fna	Salmonella_enterica	0.5219	88.72 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQERS010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048941 SAMN37820088-rid19814493.denovo.10, whole genome shotgun sequence	83558..83995	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQERS010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048941 SAMN37820088-rid19814493.guided.52, whole genome shotgun sequence	14201..14638	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQERS010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048941 SAMN37820088-rid19814493.denovo.14, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQERS010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048941 SAMN37820088-rid19814493.denovo.14, whole genome shotgun sequence	60371..60632																																																avrA	DAQERS010000021.1	39625..40494	99.885	870	0						
GCA_032702385.1_PDT001939942.1_genomic.fna	Salmonella_enterica	0.5226	148.378 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQERU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028325 SAMN37819642-rid19812773.denovo.01, whole genome shotgun sequence	382106..382543	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQERU010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028325 SAMN37819642-rid19812773.guided.13, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQERU010000003.1	39538..40407	99.77	870	0						
GCA_032702405.1_PDT001939927.1_genomic.fna	Salmonella_enterica	0.5232	131.425 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQERV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028395 SAMN37819656-rid19814473.denovo.01, whole genome shotgun sequence	382100..382537	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQERV010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028395 SAMN37819656-rid19814473.guided.39, whole genome shotgun sequence	25753..26190	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQERV010000013.1	39528..40397	99.77	870	0						
GCA_032702445.1_PDT001939922.1_genomic.fna	Salmonella_enterica	0.5215	125.899 KB	13	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQERX010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028407 SAMN37819660-rid19812753.denovo.17, whole genome shotgun sequence	44035..44472	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQERX010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028407 SAMN37819660-rid19812753.guided.46, whole genome shotgun sequence	7323..7760	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQERX010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028407 SAMN37819660-rid19812753.denovo.66, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQERX010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028407 SAMN37819660-rid19812753.denovo.31, whole genome shotgun sequence	40527..41169		enterobacteriales	IncFII(S)	100	262 / 262	DAQERX010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028407 SAMN37819660-rid19812753.denovo.31, whole genome shotgun sequence	55552..55813																																									avrA	DAQERX010000003.1	140958..141827	99.54	870	0						
GCA_032702465.1_PDT001939912.1_genomic.fna	Salmonella_enterica	0.5206	159.096 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQERW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00038912 SAMN37819756-rid19812743.denovo.01, whole genome shotgun sequence	338467..338904	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQERW010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00038912 SAMN37819756-rid19812743.guided.16, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	97.19	534 / 534	DAQERW010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00038912 SAMN37819756-rid19812743.denovo.29, whole genome shotgun sequence	19487..20020																																																						avrA	DAQERW010000004.1	93814..94683	99.77	870	0						
GCA_032702485.1_PDT001939892.1_genomic.fna	Salmonella_enterica	0.5217	80.072 KB	19	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQERY010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040827 SAMN37819774-rid19812723.denovo.004, whole genome shotgun sequence	16074..16511	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQERY010000126.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040827 SAMN37819774-rid19812723.guided.063, whole genome shotgun sequence	5245..5682	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQERY010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040827 SAMN37819774-rid19812723.denovo.099, whole genome shotgun sequence	358..488	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQERY010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040827 SAMN37819774-rid19812723.denovo.038, whole genome shotgun sequence	35183..35825		enterobacteriales	IncFII(S)	100	262 / 262	DAQERY010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040827 SAMN37819774-rid19812723.denovo.087, whole genome shotgun sequence	3423..3684																																									avrA	DAQERY010000036.1	43667..44536	99.54	870	0						
GCA_032702505.1_PDT001939862.1_genomic.fna	Salmonella_enterica	0.5214	170.235 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	3	Col(BS512),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQERZ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022432 SAMN37819546-rid19814453.denovo.02, whole genome shotgun sequence	151842..152279	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQERZ010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022432 SAMN37819546-rid19814453.guided.36, whole genome shotgun sequence	10160..10597	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	Col(BS512)	100	233 / 233	DAQERZ010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022432 SAMN37819546-rid19814453.denovo.46, whole genome shotgun sequence	400..632	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQERZ010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022432 SAMN37819546-rid19814453.denovo.28, whole genome shotgun sequence	40527..41169		enterobacteriales	IncFII(S)	100	262 / 262	DAQERZ010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022432 SAMN37819546-rid19814453.denovo.42, whole genome shotgun sequence	3415..3676																																									avrA	DAQERZ010000005.1	140958..141827	99.54	870	0						
GCA_032702525.1_PDT001939810.1_genomic.fna	Salmonella_enterica	0.521	149.782 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		4	IncFIB(S),IncFII(S),IncM2,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQESB010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021306 SAMN37819514-rid19812603.denovo.02, whole genome shotgun sequence	62385..62822	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQESB010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021306 SAMN37819514-rid19812603.guided.43, whole genome shotgun sequence	9823..10260	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	DAQESB010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021306 SAMN37819514-rid19812603.denovo.50, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQESB010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021306 SAMN37819514-rid19812603.guided.51, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQESB010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021306 SAMN37819514-rid19812603.denovo.31, whole genome shotgun sequence	48112..48754	enterobacteriales	IncFII(S)	100	262 / 262	DAQESB010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021306 SAMN37819514-rid19812603.denovo.31, whole genome shotgun sequence	3859..4120		enterobacteriales	IncM2	98.5	665 / 664	DAQESB010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021306 SAMN37819514-rid19812603.denovo.29, whole genome shotgun sequence	51109..51771		enterobacteriales	IncX1	95.76	377 / 377	DAQESB010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021306 SAMN37819514-rid19812603.denovo.38, whole genome shotgun sequence	4749..5125																																		avrA	DAQESB010000005.1	142397..143266	99.54	870	0						
GCA_032702545.1_PDT001939839.1_genomic.fna	Salmonella_enterica	0.5223	104.636 KB	13	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQESA010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046818 SAMN37819995-rid19806393.denovo.12, whole genome shotgun sequence	56218..56655	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQESA010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046818 SAMN37819995-rid19806393.guided.44, whole genome shotgun sequence	15738..16175	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	DAQESA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046818 SAMN37819995-rid19806393.denovo.01, whole genome shotgun sequence	139609..140031	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQESA010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046818 SAMN37819995-rid19806393.guided.40, whole genome shotgun sequence	34383..34805	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQESA010000006.1	101008..101877	99.425	870	0						
GCA_032702565.1_PDT001939785.1_genomic.fna	Salmonella_enterica	0.5211	84.918 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQESC010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028463 SAMN37819668-rid19814413.denovo.018, whole genome shotgun sequence	52343..52780	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQESC010000112.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028463 SAMN37819668-rid19814413.guided.068, whole genome shotgun sequence	3253..3690	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQESC010000003.1	123990..124859	99.77	870	0						
GCA_032702605.1_PDT001930638.1_genomic.fna	Salmonella_enterica	0.5222	217.849 KB	9	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVQL010000004.1 Salmonella enterica strain PNUSAS391183 SAMN37807167-rid19728443.denovo.04, whole genome shotgun sequence	145376..145813	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVQL010000036.1 Salmonella enterica strain PNUSAS391183 SAMN37807167-rid19728443.denovo.40, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVQL010000036.1 Salmonella enterica strain PNUSAS391183 SAMN37807167-rid19728443.denovo.40, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVQL010000036.1 Salmonella enterica strain PNUSAS391183 SAMN37807167-rid19728443.denovo.40, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVQL010000036.1 Salmonella enterica strain PNUSAS391183 SAMN37807167-rid19728443.denovo.40, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVQL010000036.1 Salmonella enterica strain PNUSAS391183 SAMN37807167-rid19728443.denovo.40, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNVQL010000051.1 Salmonella enterica strain PNUSAS391183 SAMN37807167-rid19728443.guided.24, whole genome shotgun sequence	41901..42338	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVQL010000054.1 Salmonella enterica strain PNUSAS391183 SAMN37807167-rid19728443.guided.39, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVQL010000054.1 Salmonella enterica strain PNUSAS391183 SAMN37807167-rid19728443.guided.39, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVQL010000054.1 Salmonella enterica strain PNUSAS391183 SAMN37807167-rid19728443.guided.39, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVQL010000054.1 Salmonella enterica strain PNUSAS391183 SAMN37807167-rid19728443.guided.39, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVQL010000054.1 Salmonella enterica strain PNUSAS391183 SAMN37807167-rid19728443.guided.39, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNVQL010000038.1 Salmonella enterica strain PNUSAS391183 SAMN37807167-rid19728443.denovo.43, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVQL010000055.1 Salmonella enterica strain PNUSAS391183 SAMN37807167-rid19728443.guided.41, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNVQL010000042.1 Salmonella enterica strain PNUSAS391183 SAMN37807167-rid19728443.denovo.47, whole genome shotgun sequence	805..997																																																						avrA	ABNVQL010000008.1	39546..40415	99.655	870	0						
GCA_032702645.1_PDT001930637.1_genomic.fna	Salmonella_enterica	0.5213	245.219 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVQN010000001.1 Salmonella enterica strain PNUSAS391174 SAMN37807168-rid19720593.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVQN010000029.1 Salmonella enterica strain PNUSAS391174 SAMN37807168-rid19720593.denovo.30, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVQN010000029.1 Salmonella enterica strain PNUSAS391174 SAMN37807168-rid19720593.denovo.30, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNVQN010000058.1 Salmonella enterica strain PNUSAS391174 SAMN37807168-rid19720593.guided.41, whole genome shotgun sequence	2984..3421	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVQN010000059.1 Salmonella enterica strain PNUSAS391174 SAMN37807168-rid19720593.guided.42, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVQN010000059.1 Salmonella enterica strain PNUSAS391174 SAMN37807168-rid19720593.guided.42, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNVQN010000029.1 Salmonella enterica strain PNUSAS391174 SAMN37807168-rid19720593.denovo.30, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNVQN010000059.1 Salmonella enterica strain PNUSAS391174 SAMN37807168-rid19720593.guided.42, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNVQN010000029.1 Salmonella enterica strain PNUSAS391174 SAMN37807168-rid19720593.denovo.30, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVQN010000057.1 Salmonella enterica strain PNUSAS391174 SAMN37807168-rid19720593.guided.35, whole genome shotgun sequence	5579..6778	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVQN010000035.1 Salmonella enterica strain PNUSAS391174 SAMN37807168-rid19720593.denovo.38, whole genome shotgun sequence	9109..9668																																																						avrA	ABNVQN010000003.1	39430..40299	99.655	870	0						
GCA_032702805.1_PDT001930629.1_genomic.fna	Salmonella_enterica	0.5219	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVQU010000002.1 Salmonella enterica strain PNUSAS391173 SAMN37807132-rid19715443.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVQU010000068.1 Salmonella enterica strain PNUSAS391173 SAMN37807132-rid19715443.guided.19, whole genome shotgun sequence	20992..21429	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVQU010000033.1 Salmonella enterica strain PNUSAS391173 SAMN37807132-rid19715443.denovo.36, whole genome shotgun sequence	124..766	enterobacteriales	IncFII(S)	100	262 / 262	ABNVQU010000052.1 Salmonella enterica strain PNUSAS391173 SAMN37807132-rid19715443.denovo.55, whole genome shotgun sequence	511..772																																																avrA	ABNVQU010000001.1	401453..402321	100	869	0						
GCA_032702885.1_PDT001930617.1_genomic.fna	Salmonella_enterica	0.5226	296.399 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVQZ010000001.1 Salmonella enterica strain PNUSAS391172 SAMN37807131-rid19721803.denovo.01, whole genome shotgun sequence	406983..407420	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVQZ010000034.1 Salmonella enterica strain PNUSAS391172 SAMN37807131-rid19721803.guided.20, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032702905.1_PDT001930616.1_genomic.fna	Salmonella_enterica	0.5212	304.608 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNVRB010000002.1 Salmonella enterica strain PNUSAS391179 SAMN37807129-rid19741853.denovo.02, whole genome shotgun sequence	177103..177540	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNVRB010000045.1 Salmonella enterica strain PNUSAS391179 SAMN37807129-rid19741853.guided.21, whole genome shotgun sequence	28853..29290	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVRB010000001.1	563271..564140	99.77	870	0						
GCA_032702925.1_PDT001930615.1_genomic.fna	Salmonella_enterica	0.5228	195.078 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVRC010000001.1 Salmonella enterica strain PNUSAS391177 SAMN37807128-rid19730893.denovo.01, whole genome shotgun sequence	690908..691345	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVRC010000039.1 Salmonella enterica strain PNUSAS391177 SAMN37807128-rid19730893.guided.27, whole genome shotgun sequence	18006..18443	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVRC010000003.1	39430..40299	99.655	870	0						
GCA_032702945.1_PDT001930614.1_genomic.fna	Salmonella_enterica	0.521	216.998 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVRD010000001.1 Salmonella enterica strain PNUSAS391176 SAMN37807134-rid19739113.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVRD010000018.1 Salmonella enterica strain PNUSAS391176 SAMN37807134-rid19739113.denovo.18, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVRD010000018.1 Salmonella enterica strain PNUSAS391176 SAMN37807134-rid19739113.denovo.18, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNVRD010000056.1 Salmonella enterica strain PNUSAS391176 SAMN37807134-rid19739113.guided.31, whole genome shotgun sequence	20718..21155	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVRD010000059.1 Salmonella enterica strain PNUSAS391176 SAMN37807134-rid19739113.guided.42, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVRD010000059.1 Salmonella enterica strain PNUSAS391176 SAMN37807134-rid19739113.guided.42, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNVRD010000018.1 Salmonella enterica strain PNUSAS391176 SAMN37807134-rid19739113.denovo.18, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNVRD010000059.1 Salmonella enterica strain PNUSAS391176 SAMN37807134-rid19739113.guided.42, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNVRD010000018.1 Salmonella enterica strain PNUSAS391176 SAMN37807134-rid19739113.denovo.18, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVRD010000058.1 Salmonella enterica strain PNUSAS391176 SAMN37807134-rid19739113.guided.41, whole genome shotgun sequence	5018..6217	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVRD010000027.1 Salmonella enterica strain PNUSAS391176 SAMN37807134-rid19739113.denovo.27, whole genome shotgun sequence	32558..33117																																																						avrA	ABNVRD010000003.1	39357..40226	99.655	870	0						
GCA_032702965.1_PDT001927931.1_genomic.fna	Salmonella_enterica	0.5224	280.485 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVRF010000001.1 Salmonella enterica strain PNUSAS391178 SAMN37807130-rid19713723.denovo.01, whole genome shotgun sequence	454799..455236	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVRF010000036.1 Salmonella enterica strain PNUSAS391178 SAMN37807130-rid19713723.guided.27, whole genome shotgun sequence	20274..20711	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVRF010000008.1	39478..40347	98.966	870	0						
GCA_032702985.1_PDT001790642.1_genomic.fna	Salmonella_enterica	0.5213	279.964 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncQ1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVRG010000002.1 Salmonella enterica strain PNUSAS358517 SAMN35989210-rid18558093.denovo.02, whole genome shotgun sequence	20725..21162	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVRG010000039.1 Salmonella enterica strain PNUSAS358517 SAMN35989210-rid18558093.denovo.44, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVRG010000039.1 Salmonella enterica strain PNUSAS358517 SAMN35989210-rid18558093.denovo.44, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNVRG010000056.1 Salmonella enterica strain PNUSAS358517 SAMN35989210-rid18558093.guided.40, whole genome shotgun sequence	2736..3173	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVRG010000057.1 Salmonella enterica strain PNUSAS358517 SAMN35989210-rid18558093.guided.42, whole genome shotgun sequence	1988..2824	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVRG010000057.1 Salmonella enterica strain PNUSAS358517 SAMN35989210-rid18558093.guided.42, whole genome shotgun sequence	1185..1988	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNVRG010000041.1 Salmonella enterica strain PNUSAS358517 SAMN35989210-rid18558093.denovo.47, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNVRG010000058.1 Salmonella enterica strain PNUSAS358517 SAMN35989210-rid18558093.guided.46, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNVRG010000039.1 Salmonella enterica strain PNUSAS358517 SAMN35989210-rid18558093.denovo.44, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNVRG010000057.1 Salmonella enterica strain PNUSAS358517 SAMN35989210-rid18558093.guided.42, whole genome shotgun sequence	309..1124	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNVRG010000030.1 Salmonella enterica strain PNUSAS358517 SAMN35989210-rid18558093.denovo.32, whole genome shotgun sequence	10940..12145	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNVRG010000055.1 Salmonella enterica strain PNUSAS358517 SAMN35989210-rid18558093.guided.33, whole genome shotgun sequence	9803..11008	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncQ1	100	796 / 796	ABNVRG010000033.1 Salmonella enterica strain PNUSAS358517 SAMN35989210-rid18558093.denovo.36, whole genome shotgun sequence	4611..5406																																																						avrA	ABNVRG010000001.1	587102..587971	99.885	870	0						
GCA_032703025.1_PDT001927930.1_genomic.fna	Salmonella_enterica	0.5204	283.264 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVRE010000001.1 Salmonella enterica strain PNUSAS391186 SAMN37807127-rid19713713.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVRE010000029.1 Salmonella enterica strain PNUSAS391186 SAMN37807127-rid19713713.guided.18, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABNVRE010000019.1 Salmonella enterica strain PNUSAS391186 SAMN37807127-rid19713713.denovo.20, whole genome shotgun sequence	32011..32384																																																						avrA	ABNVRE010000014.1	39351..40220	99.54	870	0						
GCA_032703045.1_PDT001790640.1_genomic.fna	Salmonella_enterica	0.5204	406.451 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVRI010000001.1 Salmonella enterica strain PNUSAS358511 SAMN35989207-rid18558073.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVRI010000028.1 Salmonella enterica strain PNUSAS358511 SAMN35989207-rid18558073.guided.20, whole genome shotgun sequence	4026..4463	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVRI010000019.1 Salmonella enterica strain PNUSAS358511 SAMN35989207-rid18558073.denovo.22, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNVRI010000015.1 Salmonella enterica strain PNUSAS358511 SAMN35989207-rid18558073.denovo.16, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNVRI010000016.1 Salmonella enterica strain PNUSAS358511 SAMN35989207-rid18558073.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABNVRI010000002.1	553362..554231	99.54	870	0						
GCA_032703065.1_PDT001790641.1_genomic.fna	Salmonella_enterica	0.5214	225.554 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVRH010000005.1 Salmonella enterica strain PNUSAS358450 SAMN35989174-rid18558083.denovo.05, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVRH010000059.1 Salmonella enterica strain PNUSAS358450 SAMN35989174-rid18558083.guided.30, whole genome shotgun sequence	36084..36521	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVRH010000002.1	174650..175518	100	869	0						
GCA_032703085.1_PDT001790639.1_genomic.fna	Salmonella_enterica	0.5224	352.403 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNVRJ010000004.1 Salmonella enterica strain PNUSAS358451 SAMN35989173-rid18558063.denovo.04, whole genome shotgun sequence	149873..150310	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNVRJ010000028.1 Salmonella enterica strain PNUSAS358451 SAMN35989173-rid18558063.guided.25, whole genome shotgun sequence	8082..8519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNVRJ010000016.1 Salmonella enterica strain PNUSAS358451 SAMN35989173-rid18558063.denovo.16, whole genome shotgun sequence	11630..12163																																																						avrA	ABNVRJ010000005.1	174277..175146	99.54	870	0						
GCA_032703105.1_PDT001940410.1_genomic.fna	Salmonella_enterica	0.5212	149.956 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQESE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028862 SAMN37819679-rid19813373.denovo.01, whole genome shotgun sequence	222890..223327	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQESE010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028862 SAMN37819679-rid19813373.guided.36, whole genome shotgun sequence	11534..11971	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQESE010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028862 SAMN37819679-rid19813373.denovo.53, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQESE010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028862 SAMN37819679-rid19813373.denovo.28, whole genome shotgun sequence	36764..37406		enterobacteriales	IncFII(S)	100	262 / 262	DAQESE010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028862 SAMN37819679-rid19813373.denovo.28, whole genome shotgun sequence	51789..52050																																									avrA	DAQESE010000005.1	115367..116236	99.54	870	0						
GCA_032703125.1_PDT001940400.1_genomic.fna	Salmonella_enterica	0.521	268.899 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQESD010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029163 SAMN37819688-rid19813363.denovo.02, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQESD010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029163 SAMN37819688-rid19813363.guided.22, whole genome shotgun sequence	24986..25423	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQESD010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029163 SAMN37819688-rid19813363.denovo.35, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQESD010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029163 SAMN37819688-rid19813363.denovo.20, whole genome shotgun sequence	40528..41170		enterobacteriales	IncFII(S)	100	262 / 262	DAQESD010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029163 SAMN37819688-rid19813363.denovo.20, whole genome shotgun sequence	55553..55814																																									avrA	DAQESD010000003.1	140958..141827	99.54	870	0						
GCA_032703185.1_PDT001940328.1_genomic.fna	Salmonella_enterica	0.5219	76.432 KB	21	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQESH010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046021 SAMN37819926-rid19814593.denovo.047, whole genome shotgun sequence	14141..14578	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQESH010000132.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046021 SAMN37819926-rid19814593.guided.085, whole genome shotgun sequence	14164..14601	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQESH010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046021 SAMN37819926-rid19814593.denovo.022, whole genome shotgun sequence	48425..49067	enterobacteriales	IncFII(S)	100	262 / 262	DAQESH010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046021 SAMN37819926-rid19814593.denovo.022, whole genome shotgun sequence	64152..64413																																																avrA	DAQESH010000005.1	61077..61946	99.885	870	0						
GCA_032703205.1_PDT001940338.1_genomic.fna	Salmonella_enterica	0.5223	54.815 KB	30	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQESF010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045902 SAMN37819917-rid19814603.denovo.066, whole genome shotgun sequence	14115..14552	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQESF010000157.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045902 SAMN37819917-rid19814603.guided.065, whole genome shotgun sequence	14143..14580	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQESF010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045902 SAMN37819917-rid19814603.denovo.042, whole genome shotgun sequence	43123..43765	enterobacteriales	IncFII(S)	100	262 / 262	DAQESF010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045902 SAMN37819917-rid19814603.denovo.035, whole genome shotgun sequence	12992..13253																																																avrA	DAQESF010000005.1	106579..107448	99.885	870	0						
GCA_032703225.1_PDT001940253.1_genomic.fna	Salmonella_enterica	0.5223	85.648 KB	17	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSFO),IncL	aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQESI010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00030745 SAMN37819706-rid19813183.denovo.009, whole genome shotgun sequence	84956..85393	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQESI010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00030745 SAMN37819706-rid19813183.guided.031, whole genome shotgun sequence	15453..15890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSFO)	95.04	262 / 258	DAQESI010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00030745 SAMN37819706-rid19813183.denovo.088, whole genome shotgun sequence	1043..1304	enterobacteriales	IncL	98.49	663 / 661	DAQESI010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00030745 SAMN37819706-rid19813183.denovo.027, whole genome shotgun sequence	33632..34293																																																avrA	DAQESI010000012.1	106315..107184	98.851	870	0						
GCA_032703245.1_PDT001940323.1_genomic.fna	Salmonella_enterica	0.5217	78.016 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQESG010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047093 SAMN37820017-rid19813263.denovo.031, whole genome shotgun sequence	15483..15920	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQESG010000132.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047093 SAMN37820017-rid19813263.guided.015, whole genome shotgun sequence	15880..16317	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQESG010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047093 SAMN37820017-rid19813263.denovo.012, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQESG010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047093 SAMN37820017-rid19813263.denovo.012, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQESG010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047093 SAMN37820017-rid19813263.denovo.014, whole genome shotgun sequence	15833..15969																																									avrA	DAQESG010000024.1	39625..40494	99.885	870	0						
GCA_032703265.1_PDT001940218.1_genomic.fna	Salmonella_enterica	0.5228	51.223 KB	33	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQESJ010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045343 SAMN37819824-rid19813143.denovo.020, whole genome shotgun sequence	12503..12940	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQESJ010000182.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045343 SAMN37819824-rid19813143.guided.045, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQESJ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045343 SAMN37819824-rid19813143.denovo.003, whole genome shotgun sequence	36053..36695	enterobacteriales	IncFII(S)	100	262 / 262	DAQESJ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045343 SAMN37819824-rid19813143.denovo.003, whole genome shotgun sequence	51780..52041																																																avrA	DAQESJ010000007.1	84016..84885	99.885	870	0						
GCA_032703285.1_PDT001940206.1_genomic.fna	Salmonella_enterica	0.5227	50.345 KB	29	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQESM010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045407 SAMN37819835-rid19813113.denovo.065, whole genome shotgun sequence	11318..11755	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQESM010000180.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045407 SAMN37819835-rid19813113.guided.130, whole genome shotgun sequence	2455..2892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQESM010000131.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045407 SAMN37819835-rid19813113.denovo.134, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQESM010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045407 SAMN37819835-rid19813113.denovo.008, whole genome shotgun sequence	48411..49053		enterobacteriales	IncFII(S)	100	262 / 262	DAQESM010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045407 SAMN37819835-rid19813113.denovo.008, whole genome shotgun sequence	64138..64399																																									avrA	DAQESM010000018.1	61116..61985	99.885	870	0						
GCA_032703305.1_PDT001940216.1_genomic.fna	Salmonella_enterica	0.5221	88.516 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQESK010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045370 SAMN37819826-rid19813133.denovo.005, whole genome shotgun sequence	20907..21344	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQESK010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045370 SAMN37819826-rid19813133.guided.062, whole genome shotgun sequence	11594..12031	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	90.84	131 / 131	DAQESK010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045370 SAMN37819826-rid19813133.denovo.089, whole genome shotgun sequence	188..318	enterobacteriales	IncFIB(S)	100	643 / 643	DAQESK010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045370 SAMN37819826-rid19813133.denovo.015, whole genome shotgun sequence	48429..49071		enterobacteriales	IncFII(S)	100	262 / 262	DAQESK010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045370 SAMN37819826-rid19813133.denovo.015, whole genome shotgun sequence	64156..64417																																									avrA	DAQESK010000006.1	61116..61985	99.885	870	0						
GCA_032703325.1_PDT001940196.1_genomic.fna	Salmonella_enterica	0.5219	83.689 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQESL010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046048 SAMN37819930-rid19813093.denovo.026, whole genome shotgun sequence	13059..13496	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQESL010000124.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046048 SAMN37819930-rid19813093.guided.043, whole genome shotgun sequence	31564..32001	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQESL010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046048 SAMN37819930-rid19813093.denovo.014, whole genome shotgun sequence	48444..49086	enterobacteriales	IncFII(S)	100	262 / 262	DAQESL010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046048 SAMN37819930-rid19813093.denovo.014, whole genome shotgun sequence	64171..64432																																																avrA	DAQESL010000008.1	61077..61946	99.885	870	0						
GCA_032703365.1_PDT001940176.1_genomic.fna	Salmonella_enterica	0.522	77.553 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQESN010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046362 SAMN37819948-rid19814553.denovo.007, whole genome shotgun sequence	83576..84013	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQESN010000125.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046362 SAMN37819948-rid19814553.guided.037, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQESN010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046362 SAMN37819948-rid19814553.denovo.012, whole genome shotgun sequence	48405..49047	enterobacteriales	IncFII(S)	100	262 / 262	DAQESN010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046362 SAMN37819948-rid19814553.denovo.012, whole genome shotgun sequence	64132..64393																																																avrA	DAQESN010000008.1	98450..99319	99.885	870	0						
GCA_032703385.1_PDT001940121.1_genomic.fna	Salmonella_enterica	0.5201	252.725 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQESO010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021464 SAMN37819517-rid19813023.denovo.03, whole genome shotgun sequence	162520..162957	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQESO010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021464 SAMN37819517-rid19813023.guided.28, whole genome shotgun sequence	9026..9463	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	DAQESO010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021464 SAMN37819517-rid19813023.denovo.24, whole genome shotgun sequence	5285..6145	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQESO010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021464 SAMN37819517-rid19813023.denovo.24, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQESO010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021464 SAMN37819517-rid19813023.denovo.24, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQESO010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021464 SAMN37819517-rid19813023.denovo.24, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQESO010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021464 SAMN37819517-rid19813023.denovo.24, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	DAQESO010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021464 SAMN37819517-rid19813023.guided.33, whole genome shotgun sequence	1873..2733	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQESO010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021464 SAMN37819517-rid19813023.guided.33, whole genome shotgun sequence	1873..2733	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQESO010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021464 SAMN37819517-rid19813023.guided.33, whole genome shotgun sequence	1873..2733	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQESO010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021464 SAMN37819517-rid19813023.guided.33, whole genome shotgun sequence	1873..2733	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQESO010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021464 SAMN37819517-rid19813023.guided.33, whole genome shotgun sequence	1873..2733	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQESO010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021464 SAMN37819517-rid19813023.denovo.23, whole genome shotgun sequence	40520..41162	enterobacteriales	IncFII(S)	100	262 / 262	DAQESO010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021464 SAMN37819517-rid19813023.denovo.30, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	98.66	374 / 374	DAQESO010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021464 SAMN37819517-rid19813023.denovo.24, whole genome shotgun sequence	11911..12284																																									avrA	DAQESO010000001.1	553382..554251	99.54	870	0						
GCA_032703405.1_PDT001940141.1_genomic.fna	Salmonella_enterica	0.5215	96.243 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQESP010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048504 SAMN37820067-rid19813043.denovo.002, whole genome shotgun sequence	20897..21334	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQESP010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048504 SAMN37820067-rid19813043.guided.047, whole genome shotgun sequence	14305..14742	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQESP010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048504 SAMN37820067-rid19813043.denovo.018, whole genome shotgun sequence	48424..49066	enterobacteriales	IncFII(S)	100	262 / 262	DAQESP010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048504 SAMN37820067-rid19813043.denovo.018, whole genome shotgun sequence	64151..64412																																																avrA	DAQESP010000004.1	95178..96047	99.885	870	0						
GCA_032703425.1_PDT001940096.1_genomic.fna	Salmonella_enterica	0.5203	230.394 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQESQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00026588 SAMN37819618-rid19813003.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQESQ010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00026588 SAMN37819618-rid19813003.guided.17, whole genome shotgun sequence	40074..40511	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQESQ010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00026588 SAMN37819618-rid19813003.denovo.26, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQESQ010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00026588 SAMN37819618-rid19813003.denovo.40, whole genome shotgun sequence	3420..3681		enterobacteriales	IncX1	98.4	374 / 374	DAQESQ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00026588 SAMN37819618-rid19813003.denovo.32, whole genome shotgun sequence	10523..10896																																									avrA	DAQESQ010000007.1	140974..141843	99.54	870	0						
GCA_032703445.1_PDT001940073.1_genomic.fna	Salmonella_enterica	0.5216	102.991 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQESR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00034174 SAMN37819726-rid19810473.denovo.01, whole genome shotgun sequence	106341..106778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQESR010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00034174 SAMN37819726-rid19810473.guided.43, whole genome shotgun sequence	13879..14316	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQESR010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00034174 SAMN37819726-rid19810473.guided.44, whole genome shotgun sequence	13879..14316	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																							enterobacteriales	ColRNAI	90.08	131 / 130	DAQESR010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00034174 SAMN37819726-rid19810473.denovo.67, whole genome shotgun sequence	3981..4111	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQESR010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00034174 SAMN37819726-rid19810473.denovo.34, whole genome shotgun sequence	40527..41169		enterobacteriales	IncFII(S)	100	262 / 262	DAQESR010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00034174 SAMN37819726-rid19810473.denovo.60, whole genome shotgun sequence	3415..3676																																									avrA	DAQESR010000008.1	115310..116179	99.54	870	0						
GCA_032703465.1_PDT001940034.1_genomic.fna	Salmonella_enterica	0.52	377.183 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQESS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022268 SAMN37819542-rid19812903.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQESS010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022268 SAMN37819542-rid19812903.guided.16, whole genome shotgun sequence	42546..42983	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	DAQESS010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022268 SAMN37819542-rid19812903.denovo.21, whole genome shotgun sequence	5285..6145	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQESS010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022268 SAMN37819542-rid19812903.denovo.21, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQESS010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022268 SAMN37819542-rid19812903.denovo.21, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQESS010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022268 SAMN37819542-rid19812903.denovo.21, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQESS010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022268 SAMN37819542-rid19812903.denovo.21, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	DAQESS010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022268 SAMN37819542-rid19812903.guided.30, whole genome shotgun sequence	3945..4805	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQESS010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022268 SAMN37819542-rid19812903.guided.30, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQESS010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022268 SAMN37819542-rid19812903.guided.30, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQESS010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022268 SAMN37819542-rid19812903.guided.30, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQESS010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022268 SAMN37819542-rid19812903.guided.30, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQESS010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022268 SAMN37819542-rid19812903.denovo.20, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQESS010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022268 SAMN37819542-rid19812903.denovo.28, whole genome shotgun sequence	3420..3681		enterobacteriales	IncX1	98.66	374 / 374	DAQESS010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022268 SAMN37819542-rid19812903.denovo.21, whole genome shotgun sequence	11911..12284																																									avrA	DAQESS010000007.1	140958..141827	99.54	870	0						
GCA_032703485.1_PDT001940009.1_genomic.fna	Salmonella_enterica	0.5212	82.81 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEST010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046441 SAMN37819957-rid19812873.denovo.033, whole genome shotgun sequence	12554..12991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEST010000122.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046441 SAMN37819957-rid19812873.guided.005, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEST010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046441 SAMN37819957-rid19812873.denovo.015, whole genome shotgun sequence	48418..49060	enterobacteriales	IncFII(S)	100	262 / 262	DAQEST010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046441 SAMN37819957-rid19812873.denovo.015, whole genome shotgun sequence	64145..64406		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEST010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046441 SAMN37819957-rid19812873.denovo.018, whole genome shotgun sequence	15829..15965																																									avrA	DAQEST010000022.1	39625..40494	99.885	870	0						
GCA_032703505.1_PDT001939979.1_genomic.fna	Salmonella_enterica	0.522	77.206 KB	22	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQESV010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046742 SAMN37819984-rid19812843.denovo.028, whole genome shotgun sequence	12409..12846	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQESV010000131.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046742 SAMN37819984-rid19812843.guided.033, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQESV010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046742 SAMN37819984-rid19812843.denovo.012, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQESV010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046742 SAMN37819984-rid19812843.denovo.012, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQESV010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046742 SAMN37819984-rid19812843.denovo.016, whole genome shotgun sequence	15833..15969																																									avrA	DAQESV010000003.1	106374..107243	99.885	870	0						
GCA_032703525.1_PDT001939999.1_genomic.fna	Salmonella_enterica	0.5217	64.627 KB	23	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQESU010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046499 SAMN37819966-rid19812863.denovo.020, whole genome shotgun sequence	20884..21321	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQESU010000139.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046499 SAMN37819966-rid19812863.guided.044, whole genome shotgun sequence	14650..15087	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQESU010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046499 SAMN37819966-rid19812863.denovo.030, whole genome shotgun sequence	44751..45393	enterobacteriales	IncFII(S)	100	262 / 262	DAQESU010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046499 SAMN37819966-rid19812863.denovo.030, whole genome shotgun sequence	29405..29666		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQESU010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046499 SAMN37819966-rid19812863.denovo.043, whole genome shotgun sequence	22488..22624																																									avrA	DAQESU010000003.1	95120..95989	99.885	870	0						
GCA_032703545.1_PDT001939969.1_genomic.fna	Salmonella_enterica	0.5215	97.03 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQESX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048693 SAMN37820079-rid19812833.denovo.01, whole genome shotgun sequence	223479..223916	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQESX010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048693 SAMN37820079-rid19812833.guided.60, whole genome shotgun sequence	1984..2421	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQESX010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048693 SAMN37820079-rid19812833.denovo.25, whole genome shotgun sequence	48419..49061	enterobacteriales	IncFII(S)	100	262 / 262	DAQESX010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048693 SAMN37820079-rid19812833.denovo.25, whole genome shotgun sequence	64146..64407																																																avrA	DAQESX010000003.1	98459..99328	99.885	870	0						
GCA_032703565.1_PDT001939939.1_genomic.fna	Salmonella_enterica	0.5205	110.798 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQESY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028346 SAMN37819645-rid19810443.denovo.01, whole genome shotgun sequence	477855..478292	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQESY010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028346 SAMN37819645-rid19810443.guided.36, whole genome shotgun sequence	31208..31645	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQESY010000003.1	124055..124924	99.77	870	0						
GCA_032703585.1_PDT001939944.1_genomic.fna	Salmonella_enterica	0.5231	99.788 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQESW010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028176 SAMN37819640-rid19812783.denovo.06, whole genome shotgun sequence	12523..12960	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQESW010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028176 SAMN37819640-rid19812783.guided.32, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQESW010000004.1	124116..124985	99.77	870	0						
GCA_032703605.1_PDT001939929.1_genomic.fna	Salmonella_enterica	0.5214	89.97 KB	17	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQESZ010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028388 SAMN37819654-rid19810423.denovo.026, whole genome shotgun sequence	14078..14515	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQESZ010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028388 SAMN37819654-rid19810423.guided.064, whole genome shotgun sequence	10156..10593	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQESZ010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028388 SAMN37819654-rid19810423.denovo.080, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQESZ010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028388 SAMN37819654-rid19810423.denovo.034, whole genome shotgun sequence	35211..35853		enterobacteriales	IncFII(S)	100	262 / 262	DAQESZ010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028388 SAMN37819654-rid19810423.denovo.034, whole genome shotgun sequence	50236..50497																																									avrA	DAQESZ010000007.1	43678..44547	99.54	870	0						
GCA_032703625.1_PDT001939827.1_genomic.fna	Salmonella_enterica	0.5219	93.67 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaTEM-1B,blaCMY-2,blaTEM-1B,dfrA5,dfrA5	0		4	IncFIB(S),IncFIB(pB171),IncFII(S),IncFII(pHN7A8),IncFII(pHN7A8)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQETA010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046922 SAMN37820006-rid19812633.denovo.019, whole genome shotgun sequence	38044..38481	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQETA010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046922 SAMN37820006-rid19812633.guided.041, whole genome shotgun sequence	20554..20991	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	DAQETA010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046922 SAMN37820006-rid19812633.denovo.035, whole genome shotgun sequence	10132..11277	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-1B	100	861/861	DAQETA010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046922 SAMN37820006-rid19812633.denovo.091, whole genome shotgun sequence	524..1384	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	DAQETA010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046922 SAMN37820006-rid19812633.guided.070, whole genome shotgun sequence	10169..11314	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-1B	100	861/861	DAQETA010000113.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046922 SAMN37820006-rid19812633.guided.089, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	dfrA5	100	474/474	DAQETA010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046922 SAMN37820006-rid19812633.denovo.035, whole genome shotgun sequence	99..572	Trimethoprim	X12868	dfrA5	100	474/474	DAQETA010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046922 SAMN37820006-rid19812633.guided.070, whole genome shotgun sequence	136..609	Trimethoprim	X12868																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	IncFIB(S)	100	643 / 643	DAQETA010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046922 SAMN37820006-rid19812633.denovo.014, whole genome shotgun sequence	48426..49068	enterobacteriales	IncFIB(pB171)	98.44	643 / 643	DAQETA010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046922 SAMN37820006-rid19812633.denovo.035, whole genome shotgun sequence	19565..20201		enterobacteriales	IncFII(S)	100	262 / 262	DAQETA010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046922 SAMN37820006-rid19812633.denovo.014, whole genome shotgun sequence	64153..64414		enterobacteriales	IncFII(pHN7A8)	97.69	260 / 260	DAQETA010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046922 SAMN37820006-rid19812633.denovo.035, whole genome shotgun sequence	6460..6719		enterobacteriales	IncFII(pHN7A8)	97.69	260 / 260	DAQETA010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046922 SAMN37820006-rid19812633.guided.070, whole genome shotgun sequence	6497..6756																											avrA	DAQETA010000026.1	61078..61947	99.885	870	0						
GCA_032703645.1_PDT001939825.1_genomic.fna	Salmonella_enterica	0.5209	152.963 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	1	gyrA_p.D87N	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQETC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021305 SAMN37819513-rid19812623.denovo.01, whole genome shotgun sequence	61652..62089	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQETC010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021305 SAMN37819513-rid19812623.guided.46, whole genome shotgun sequence	15542..15979	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	DAQETC010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021305 SAMN37819513-rid19812623.denovo.59, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQETC010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021305 SAMN37819513-rid19812623.guided.60, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQETC010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021305 SAMN37819513-rid19812623.denovo.29, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQETC010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021305 SAMN37819513-rid19812623.denovo.54, whole genome shotgun sequence	584..845		enterobacteriales	IncX1	95.76	377 / 377	DAQETC010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021305 SAMN37819513-rid19812623.denovo.76, whole genome shotgun sequence	376..752																																									avrA	DAQETC010000016.1	39505..40374	99.54	870	0						
GCA_032703665.1_PDT001939815.1_genomic.fna	Salmonella_enterica	0.5218	97.035 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQETB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049084 SAMN37820103-rid19812613.denovo.01, whole genome shotgun sequence	38028..38465	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQETB010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049084 SAMN37820103-rid19812613.guided.39, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQETB010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049084 SAMN37820103-rid19812613.denovo.15, whole genome shotgun sequence	44647..45289	enterobacteriales	IncFII(S)	100	262 / 262	DAQETB010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049084 SAMN37820103-rid19812613.denovo.15, whole genome shotgun sequence	60374..60635																																																avrA	DAQETB010000006.1	108475..109344	99.885	870	0						
GCA_032703825.1_PDT001927929.1_genomic.fna	Salmonella_enterica	0.5199	282.399 KB	7	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrS1,qnrS1	1	parC_p.T57S	0		aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNVRS010000001.1 Salmonella enterica strain PNUSAS391184 SAMN37807133-rid19713703.denovo.01, whole genome shotgun sequence	164302..164739	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNVRS010000038.1 Salmonella enterica strain PNUSAS391184 SAMN37807133-rid19713703.guided.24, whole genome shotgun sequence	16450..16887	Amikacin, Tobramycin	NC_003197	qnrS1	100	657/657	ABNVRS010000027.1 Salmonella enterica strain PNUSAS391184 SAMN37807133-rid19713703.denovo.31, whole genome shotgun sequence	4354..5010	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNVRS010000040.1 Salmonella enterica strain PNUSAS391184 SAMN37807133-rid19713703.guided.30, whole genome shotgun sequence	1..657	Ciprofloxacin	AB187515																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVRS010000013.1	39343..40212	99.425	870	0						
GCA_032703845.1_PDT001927928.1_genomic.fna	Salmonella_enterica	0.5216	195.937 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVRT010000003.1 Salmonella enterica strain PNUSAS391181 SAMN37807135-rid19712633.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVRT010000095.1 Salmonella enterica strain PNUSAS391181 SAMN37807135-rid19712633.guided.31, whole genome shotgun sequence	13415..13852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	262 / 262	ABNVRT010000044.1 Salmonella enterica strain PNUSAS391181 SAMN37807135-rid19712633.denovo.47, whole genome shotgun sequence	2212..2473																																																						avrA	ABNVRT010000007.1	39963..40831	100	869	0						
GCA_032704165.1_PDT001940166.1_genomic.fna	Salmonella_enterica	0.5217	171.636 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQETE010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048027 SAMN37820044-rid19814543.denovo.12, whole genome shotgun sequence	83586..84023	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQETE010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048027 SAMN37820044-rid19814543.guided.28, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQETE010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048027 SAMN37820044-rid19814543.denovo.16, whole genome shotgun sequence	48426..49068	enterobacteriales	IncFII(S)	100	262 / 262	DAQETE010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048027 SAMN37820044-rid19814543.denovo.16, whole genome shotgun sequence	64153..64414																																																avrA	DAQETE010000007.1	123454..124323	99.885	870	0						
GCA_032704185.1_PDT001940325.1_genomic.fna	Salmonella_enterica	0.5223	86.832 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQETD010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047064 SAMN37820015-rid19813273.denovo.005, whole genome shotgun sequence	15491..15928	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQETD010000113.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047064 SAMN37820015-rid19813273.guided.042, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQETD010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047064 SAMN37820015-rid19813273.denovo.015, whole genome shotgun sequence	68521..69163	enterobacteriales	IncFII(S)	100	262 / 262	DAQETD010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047064 SAMN37820015-rid19813273.denovo.015, whole genome shotgun sequence	84248..84509																																																avrA	DAQETD010000003.1	106221..107090	99.885	870	0						
GCA_032704205.1_PDT001939845.1_genomic.fna	Salmonella_enterica	0.5219	73.462 KB	23	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQETF010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046752 SAMN37819989-rid19812663.denovo.025, whole genome shotgun sequence	15460..15897	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQETF010000138.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046752 SAMN37819989-rid19812663.guided.059, whole genome shotgun sequence	14315..14752	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQETF010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046752 SAMN37819989-rid19812663.denovo.011, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQETF010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046752 SAMN37819989-rid19812663.denovo.011, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQETF010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046752 SAMN37819989-rid19812663.denovo.034, whole genome shotgun sequence	15827..15963																																									avrA	DAQETF010000042.1	39625..40494	99.885	870	0						
GCA_032704345.1_PDT001927890.1_genomic.fna	Salmonella_enterica	0.519	120.473 KB	14	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVSQ010000015.1 Salmonella enterica strain PNUSAS391116 SAMN37807031-rid19713543.denovo.015, whole genome shotgun sequence	75483..75920	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVSQ010000110.1 Salmonella enterica strain PNUSAS391116 SAMN37807031-rid19713543.guided.047, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNVSQ010000076.1 Salmonella enterica strain PNUSAS391116 SAMN37807031-rid19713543.denovo.079, whole genome shotgun sequence	763..893	enterobacteriales	IncHI2A	99.52	630 / 630	ABNVSQ010000062.1 Salmonella enterica strain PNUSAS391116 SAMN37807031-rid19713543.denovo.064, whole genome shotgun sequence	5616..6245		enterobacteriales	IncX1	100	373 / 373	ABNVSQ010000057.1 Salmonella enterica strain PNUSAS391116 SAMN37807031-rid19713543.denovo.059, whole genome shotgun sequence	2153..2525																																									avrA	ABNVSQ010000025.1	62009..62878	99.655	870	0						
GCA_032704365.1_PDT001927892.1_genomic.fna	Salmonella_enterica	0.5212	278.671 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVSP010000001.1 Salmonella enterica strain PNUSAS391112 SAMN37807028-rid19712473.denovo.01, whole genome shotgun sequence	458965..459402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVSP010000042.1 Salmonella enterica strain PNUSAS391112 SAMN37807028-rid19712473.guided.34, whole genome shotgun sequence	5977..6414	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVSP010000004.1	175451..176320	99.885	870	0						
GCA_032704385.1_PDT001927881.1_genomic.fna	Salmonella_enterica	0.5215	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVSS010000001.1 Salmonella enterica strain PNUSAS391115 SAMN37807027-rid19711543.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVSS010000026.1 Salmonella enterica strain PNUSAS391115 SAMN37807027-rid19711543.guided.15, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVSS010000015.1 Salmonella enterica strain PNUSAS391115 SAMN37807027-rid19711543.denovo.17, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNVSS010000017.1 Salmonella enterica strain PNUSAS391115 SAMN37807027-rid19711543.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABNVSS010000002.1	553636..554505	99.54	870	0						
GCA_032704405.1_PDT001927884.1_genomic.fna	Salmonella_enterica	0.5215	443.911 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNVSR010000001.1 Salmonella enterica strain PNUSAS391117 SAMN37807029-rid19713523.denovo.01, whole genome shotgun sequence	835210..835647	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNVSR010000029.1 Salmonella enterica strain PNUSAS391117 SAMN37807029-rid19713523.guided.20, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNVSR010000021.1 Salmonella enterica strain PNUSAS391117 SAMN37807029-rid19713523.denovo.24, whole genome shotgun sequence	1708..1838																																																						avrA	ABNVSR010000002.1	563803..564672	99.77	870	0						
GCA_032704445.1_PDT001927879.1_genomic.fna	Salmonella_enterica	0.5209	430.324 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	ColRNAI,IncFII(S)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVSU010000001.1 Salmonella enterica strain PNUSAS391113 SAMN37807025-rid19713503.denovo.01, whole genome shotgun sequence	477367..477804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVSU010000029.1 Salmonella enterica strain PNUSAS391113 SAMN37807025-rid19713503.guided.21, whole genome shotgun sequence	7685..8122	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.84	131 / 130	ABNVSU010000020.1 Salmonella enterica strain PNUSAS391113 SAMN37807025-rid19713503.denovo.23, whole genome shotgun sequence	3858..3988	enterobacteriales	IncFII(S)	100	262 / 262	ABNVSU010000015.1 Salmonella enterica strain PNUSAS391113 SAMN37807025-rid19713503.denovo.15, whole genome shotgun sequence	62007..62268																																																avrA	ABNVSU010000002.1	503470..504339	99.195	870	0						
GCA_032704465.1_PDT001927877.1_genomic.fna	Salmonella_enterica	0.5213	258.365 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVSW010000001.1 Salmonella enterica strain PNUSAS391114 SAMN37807026-rid19712413.denovo.01, whole genome shotgun sequence	462164..462601	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVSW010000047.1 Salmonella enterica strain PNUSAS391114 SAMN37807026-rid19712413.guided.26, whole genome shotgun sequence	15876..16313	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVSW010000003.1	153272..154141	99.195	870	0						
GCA_032704485.1_PDT001927878.1_genomic.fna	Salmonella_enterica	0.5214	406.346 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVSV010000001.1 Salmonella enterica strain PNUSAS391118 SAMN37807030-rid19713493.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVSV010000024.1 Salmonella enterica strain PNUSAS391118 SAMN37807030-rid19713493.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVSV010000019.1 Salmonella enterica strain PNUSAS391118 SAMN37807030-rid19713493.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNVSV010000016.1 Salmonella enterica strain PNUSAS391118 SAMN37807030-rid19713493.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNVSV010000002.1	553636..554505	99.54	870	0						
GCA_032704725.1_PDT001927853.1_genomic.fna	Salmonella_enterica	0.5202	255.047 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVTG010000001.1 Salmonella enterica strain PNUSAS391095 SAMN37806917-rid19713343.denovo.01, whole genome shotgun sequence	727905..728342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVTG010000037.1 Salmonella enterica strain PNUSAS391095 SAMN37806917-rid19713343.guided.25, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVTG010000002.1	551339..552208	99.195	870	0						
GCA_032704745.1_PDT001927852.1_genomic.fna	Salmonella_enterica	0.5211	225.553 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVTI010000001.1 Salmonella enterica strain PNUSAS391093 SAMN37806919-rid19712313.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVTI010000046.1 Salmonella enterica strain PNUSAS391093 SAMN37806919-rid19712313.guided.18, whole genome shotgun sequence	21815..22252	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVTI010000021.1 Salmonella enterica strain PNUSAS391093 SAMN37806919-rid19712313.denovo.22, whole genome shotgun sequence	18834..19476	enterobacteriales	IncFII(S)	100	262 / 262	ABNVTI010000021.1 Salmonella enterica strain PNUSAS391093 SAMN37806919-rid19712313.denovo.22, whole genome shotgun sequence	34561..34822																																																avrA	ABNVTI010000003.1	174541..175409	100	869	0						
GCA_032704765.1_PDT001927851.1_genomic.fna	Salmonella_enterica	0.5209	470.348 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVTK010000001.1 Salmonella enterica strain PNUSAS391094 SAMN37806920-rid19712303.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVTK010000024.1 Salmonella enterica strain PNUSAS391094 SAMN37806920-rid19712303.guided.17, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVTK010000015.1 Salmonella enterica strain PNUSAS391094 SAMN37806920-rid19712303.denovo.15, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNVTK010000015.1 Salmonella enterica strain PNUSAS391094 SAMN37806920-rid19712303.denovo.15, whole genome shotgun sequence	53083..53344																																																avrA	ABNVTK010000008.1	175109..175978	99.54	870	0						
GCA_032704785.1_PDT001927850.1_genomic.fna	Salmonella_enterica	0.5189	278.726 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVTL010000001.1 Salmonella enterica strain PNUSAS391092 SAMN37806918-rid19712293.denovo.01, whole genome shotgun sequence	486124..486561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVTL010000036.1 Salmonella enterica strain PNUSAS391092 SAMN37806918-rid19712293.guided.15, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNVTL010000003.1 Salmonella enterica strain PNUSAS391092 SAMN37806918-rid19712293.denovo.03, whole genome shotgun sequence	388370..388792	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNVTL010000038.1 Salmonella enterica strain PNUSAS391092 SAMN37806918-rid19712293.guided.28, whole genome shotgun sequence	16564..16986	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNVTL010000016.1 Salmonella enterica strain PNUSAS391092 SAMN37806918-rid19712293.denovo.17, whole genome shotgun sequence	75038..75179																																																						avrA	ABNVTL010000002.1	118629..119498	99.195	870	0						
GCA_032705025.1_PDT001927835.1_genomic.fna	Salmonella_enterica	0.5194	238.812 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	10	aac(6')-Iaa,aac(3)-VIa,aph(3')-Ia,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aac(3)-VIa,aph(6)-Id,aph(3'')-Ib,aadA1,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul1,sul2,sul2,sul1,tet(C),tet(C)	0		3	Col(pHAD28),IncHI2,IncHI2A	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVTZ010000001.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.denovo.01, whole genome shotgun sequence	458991..459428	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNVTZ010000034.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.denovo.36, whole genome shotgun sequence	10574..11476	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aph(3')-Ia	99.75	816/816	ABNVTZ010000034.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.denovo.36, whole genome shotgun sequence	524..1339	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	EU855787	aadA1	90.67	772/792	ABNVTZ010000034.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.denovo.36, whole genome shotgun sequence	11640..12411	Spectinomycin, Streptomycin	FJ591054	aph(6)-Id	100	837/837	ABNVTZ010000040.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.denovo.46, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVTZ010000040.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.denovo.46, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNVTZ010000056.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.guided.34, whole genome shotgun sequence	21873..22310	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNVTZ010000058.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.guided.38, whole genome shotgun sequence	60..962	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aph(6)-Id	100	837/837	ABNVTZ010000060.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.guided.44, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVTZ010000060.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.guided.44, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aadA1	90.67	772/792	ABNVTZ010000062.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.guided.49, whole genome shotgun sequence	2342..3113	Spectinomycin, Streptomycin	FJ591054	aph(3')-Ia	99.75	816/816	ABNVTZ010000064.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.guided.54, whole genome shotgun sequence	106..921	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	EU855787	blaTEM-1B	100	861/861	ABNVTZ010000044.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.denovo.53, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNVTZ010000063.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.guided.52, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	ABNVTZ010000034.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.denovo.36, whole genome shotgun sequence	3735..4574	Sulfamethoxazole	U12338	sul2	100	816/816	ABNVTZ010000040.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.denovo.46, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNVTZ010000060.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.guided.44, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABNVTZ010000061.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.guided.48, whole genome shotgun sequence	401..1240	Sulfamethoxazole	U12338	tet(C)	99.83	1191/1191	ABNVTZ010000034.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.denovo.36, whole genome shotgun sequence	19565..20755	Doxycycline, Tetracycline	AF055345	tet(C)	99.83	1191/1191	ABNVTZ010000059.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.guided.39, whole genome shotgun sequence	4424..5614	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNVTZ010000041.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.denovo.47, whole genome shotgun sequence	3645..3775	enterobacteriales	IncHI2	100	327 / 327	ABNVTZ010000023.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.denovo.23, whole genome shotgun sequence	43201..43527		enterobacteriales	IncHI2A	99.52	630 / 630	ABNVTZ010000023.1 Salmonella enterica strain PNUSAS389646 SAMN37806901-rid19712213.denovo.23, whole genome shotgun sequence	61511..62140																																									avrA	ABNVTZ010000002.1	540570..541439	99.885	870	0						
GCA_032705045.1_PDT001927834.1_genomic.fna	Salmonella_enterica	0.5214	237.761 KB	6	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVTX010000001.1 Salmonella enterica strain PNUSAS389652 SAMN37806902-rid19712203.denovo.01, whole genome shotgun sequence	133910..134347	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVTX010000040.1 Salmonella enterica strain PNUSAS389652 SAMN37806902-rid19712203.guided.23, whole genome shotgun sequence	10092..10529	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNVTX010000031.1 Salmonella enterica strain PNUSAS389652 SAMN37806902-rid19712203.denovo.34, whole genome shotgun sequence	1604..1734																																																																	
GCA_032705065.1_PDT001927836.1_genomic.fna	Salmonella_enterica	0.5183	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNVTW010000010.1 Salmonella enterica strain PNUSAS389653 SAMN37806903-rid19711533.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNVTW010000057.1 Salmonella enterica strain PNUSAS389653 SAMN37806903-rid19711533.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032705185.1_PDT001940330.1_genomic.fna	Salmonella_enterica	0.5222	82.864 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQETH010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046010 SAMN37819924-rid19813283.denovo.003, whole genome shotgun sequence	15479..15916	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQETH010000122.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046010 SAMN37819924-rid19813283.guided.036, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQETH010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046010 SAMN37819924-rid19813283.denovo.014, whole genome shotgun sequence	48407..49049	enterobacteriales	IncFII(S)	100	262 / 262	DAQETH010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046010 SAMN37819924-rid19813283.denovo.014, whole genome shotgun sequence	64134..64395																																																avrA	DAQETH010000004.1	105616..106485	99.885	870	0						
GCA_032705205.1_PDT001940348.1_genomic.fna	Salmonella_enterica	0.5211	284.015 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQETG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022448 SAMN37819548-rid19817293.denovo.01, whole genome shotgun sequence	242025..242462	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQETG010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022448 SAMN37819548-rid19817293.guided.32, whole genome shotgun sequence	8151..8588	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQETG010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022448 SAMN37819548-rid19817293.denovo.23, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQETG010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022448 SAMN37819548-rid19817293.denovo.33, whole genome shotgun sequence	3418..3679																																																avrA	DAQETG010000007.1	140582..141451	99.54	870	0						
GCA_032705225.1_PDT001940322.1_genomic.fna	Salmonella_enterica	0.521	400.825 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQETI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023028 SAMN37819559-rid19810563.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQETI010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023028 SAMN37819559-rid19810563.guided.24, whole genome shotgun sequence	2534..2971	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQETI010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023028 SAMN37819559-rid19810563.denovo.20, whole genome shotgun sequence	40528..41170	enterobacteriales	IncFII(S)	100	262 / 262	DAQETI010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023028 SAMN37819559-rid19810563.denovo.28, whole genome shotgun sequence	3414..3675																																																avrA	DAQETI010000008.1	140715..141584	99.54	870	0						
GCA_032705265.1_PDT001940238.1_genomic.fna	Salmonella_enterica	0.5223	88.322 KB	19	aroC_15,dnaN_126,hemD_101,hisD_88,purE_8,sucA_19,thrA_18	446	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_126	hemD	100	100	hemD_101	hisD	100	100	hisD_88	purE	100	100	purE_8	sucA	100	100	sucA_19	thrA	100	100	thrA_18	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQETJ010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00032230 SAMN37819718-rid19813163.denovo.026, whole genome shotgun sequence	52272..52709	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQETJ010000119.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00032230 SAMN37819718-rid19813163.guided.060, whole genome shotgun sequence	10160..10597	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQETJ010000011.1	2275..3144	99.77	870	0						
GCA_032705285.1_PDT001940208.1_genomic.fna	Salmonella_enterica	0.5219	78.95 KB	23	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQETK010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045404 SAMN37819833-rid19813123.denovo.014, whole genome shotgun sequence	12481..12918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQETK010000127.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045404 SAMN37819833-rid19813123.guided.045, whole genome shotgun sequence	35527..35964	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQETK010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045404 SAMN37819833-rid19813123.denovo.015, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	DAQETK010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045404 SAMN37819833-rid19813123.denovo.015, whole genome shotgun sequence	64139..64400		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQETK010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045404 SAMN37819833-rid19813123.denovo.047, whole genome shotgun sequence	22488..22624																																									avrA	DAQETK010000002.1	83175..84044	99.885	870	0						
GCA_032705305.1_PDT001940101.1_genomic.fna	Salmonella_enterica	0.5225	95.585 KB	17	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQETL010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00026149 SAMN37819614-rid19813013.denovo.024, whole genome shotgun sequence	52367..52804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQETL010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00026149 SAMN37819614-rid19813013.guided.054, whole genome shotgun sequence	14369..14806	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQETL010000004.1	124089..124958	99.655	870	0						
GCA_032705325.1_PDT001940111.1_genomic.fna	Salmonella_enterica	0.5211	353.214 KB	5	aroC_139,dnaN_174,hemD_68,hisD_132,purE_133,sucA_9,thrA_168	578	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_139	dnaN	100	100	dnaN_174	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_133	sucA	100	100	sucA_9	thrA	100	100	thrA_168	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQETM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00025889 SAMN37819607-rid19814533.denovo.01, whole genome shotgun sequence	146091..146528	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQETM010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00025889 SAMN37819607-rid19814533.guided.19, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQETM010000008.1	138899..139768	99.195	870	0						
GCA_032705345.1_PDT001939964.1_genomic.fna	Salmonella_enterica	0.5229	42.656 KB	36	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQETO010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048737 SAMN37820084-rid19811063.denovo.018, whole genome shotgun sequence	11326..11763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQETO010000210.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048737 SAMN37820084-rid19811063.guided.079, whole genome shotgun sequence	10187..10624	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQETO010000118.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048737 SAMN37820084-rid19811063.denovo.120, whole genome shotgun sequence	9160..9802	enterobacteriales	IncFII(S)	100	262 / 262	DAQETO010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048737 SAMN37820084-rid19811063.denovo.036, whole genome shotgun sequence	29403..29664																																																avrA	DAQETO010000040.1	39625..40494	99.885	870	0						
GCA_032705365.1_PDT001939954.1_genomic.fna	Salmonella_enterica	0.5222	96.178 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQETN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048977 SAMN37820093-rid19811053.denovo.001, whole genome shotgun sequence	15480..15917	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQETN010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048977 SAMN37820093-rid19811053.guided.029, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQETN010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048977 SAMN37820093-rid19811053.denovo.084, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQETN010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048977 SAMN37820093-rid19811053.denovo.016, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	DAQETN010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048977 SAMN37820093-rid19811053.denovo.016, whole genome shotgun sequence	30407..30668																																									avrA	DAQETN010000011.1	105330..106199	99.885	870	0						
GCA_032705385.1_PDT001939947.1_genomic.fna	Salmonella_enterica	0.5211	141.617 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQETQ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048999 SAMN37820099-rid19814483.denovo.03, whole genome shotgun sequence	12526..12963	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQETQ010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048999 SAMN37820099-rid19814483.guided.14, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQETQ010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048999 SAMN37820099-rid19814483.denovo.19, whole genome shotgun sequence	44646..45288	enterobacteriales	IncFII(S)	100	262 / 262	DAQETQ010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048999 SAMN37820099-rid19814483.denovo.19, whole genome shotgun sequence	60373..60634																																																avrA	DAQETQ010000006.1	105337..106206	99.885	870	0						
GCA_032705405.1_PDT001939887.1_genomic.fna	Salmonella_enterica	0.5218	204.552 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQETP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041083 SAMN37819778-rid19812713.denovo.01, whole genome shotgun sequence	570967..571404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQETP010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041083 SAMN37819778-rid19812713.guided.14, whole genome shotgun sequence	11574..12011	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQETP010000012.1	39539..40408	99.655	870	0						
GCA_032705425.1_PDT001939882.1_genomic.fna	Salmonella_enterica	0.521	148.614 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQETR010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045701 SAMN37819869-rid19812703.denovo.02, whole genome shotgun sequence	206854..207291	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQETR010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045701 SAMN37819869-rid19812703.guided.13, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQETR010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045701 SAMN37819869-rid19812703.denovo.20, whole genome shotgun sequence	48445..49087	enterobacteriales	IncFII(S)	100	262 / 262	DAQETR010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045701 SAMN37819869-rid19812703.denovo.20, whole genome shotgun sequence	64172..64433																																																avrA	DAQETR010000003.1	122932..123801	99.885	870	0						
GCA_032705445.1_PDT001939847.1_genomic.fna	Salmonella_enterica	0.5209	204.764 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	15	aac(6')-Iaa,aadA2,aadA1,aadA1,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aadA2,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-1B,blaTEM-1B,mph(A),erm(42),mph(A),erm(42),floR,floR,sul1,sul3,sul2,sul3,sul1,sul2,tet(A),tet(A),dfrA12,dfrA12	1	gyrA_p.D87Y	4	Col(pHAD28),IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQETT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	DAQETT010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.46, whole genome shotgun sequence	3370..4161	Spectinomycin, Streptomycin	JQ364967	aadA1	99.87	792/792	DAQETT010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.48, whole genome shotgun sequence	1160..1951	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	DAQETT010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.48, whole genome shotgun sequence	1160..1951	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	831/831	DAQETT010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.67, whole genome shotgun sequence	86..916	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQETT010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.67, whole genome shotgun sequence	922..1725	Streptomycin	AF321551	aph(3')-Ia	100	816/816	DAQETT010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.75, whole genome shotgun sequence	135..950	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	aac(6')-Iaa	96.35	438/438	DAQETT010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.guided.23, whole genome shotgun sequence	10187..10624	Amikacin, Tobramycin	NC_003197	aadA1	99.87	792/792	DAQETT010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.guided.47, whole genome shotgun sequence	1201..1992	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	DAQETT010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.guided.47, whole genome shotgun sequence	1201..1992	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	DAQETT010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.guided.52, whole genome shotgun sequence	2896..3687	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	831/831	DAQETT010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.guided.66, whole genome shotgun sequence	842..1672	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQETT010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.guided.66, whole genome shotgun sequence	33..836	Streptomycin	AF321551	aph(3')-Ia	100	816/816	DAQETT010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.guided.73, whole genome shotgun sequence	122..937	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	blaTEM-1B	100	861/861	DAQETT010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.55, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQETT010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.guided.54, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	DAQETT010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.61, whole genome shotgun sequence	1956..2861	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	erm(42)	99.89	873/912	DAQETT010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.74, whole genome shotgun sequence	1..873	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	AB601890	mph(A)	100	906/906	DAQETT010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.guided.60, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	erm(42)	99.89	912/912	DAQETT010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.guided.68, whole genome shotgun sequence	556..1467	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	AB601890	floR	98.19	1214/1215	DAQETT010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.63, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	DAQETT010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.guided.62, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	DAQETT010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.46, whole genome shotgun sequence	2026..2865	Sulfamethoxazole	U12338	sul3	100	792/792	DAQETT010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.48, whole genome shotgun sequence	3633..4424	Sulfamethoxazole	AJ459418	sul2	100	816/816	DAQETT010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.72, whole genome shotgun sequence	28..843	Sulfamethoxazole	AY034138	sul3	100	792/792	DAQETT010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.guided.47, whole genome shotgun sequence	3674..4465	Sulfamethoxazole	AJ459418	sul1	100	840/840	DAQETT010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.guided.52, whole genome shotgun sequence	4192..5031	Sulfamethoxazole	U12338	sul2	100	816/816	DAQETT010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.guided.70, whole genome shotgun sequence	326..1141	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQETT010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.59, whole genome shotgun sequence	947..2146	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQETT010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.guided.58, whole genome shotgun sequence	988..2187	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	DAQETT010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.46, whole genome shotgun sequence	4569..5066	Trimethoprim	AM040708	dfrA12	100	498/498	DAQETT010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.guided.52, whole genome shotgun sequence	1991..2488	Trimethoprim	AM040708																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQETT010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.51, whole genome shotgun sequence	1164..1294	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQETT010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.29, whole genome shotgun sequence	32997..33639		enterobacteriales	IncFII(S)	100	262 / 262	DAQETT010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.44, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	95.76	377 / 377	DAQETT010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022713 SAMN37819556-rid19812673.denovo.42, whole genome shotgun sequence	9180..9556																																		avrA	DAQETT010000009.1	115336..116205	99.54	870	0						
GCA_032705485.1_PDT001939852.1_genomic.fna	Salmonella_enterica	0.5219	67.597 KB	24	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQETS010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045855 SAMN37819897-rid19814443.denovo.023, whole genome shotgun sequence	17233..17670	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQETS010000136.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045855 SAMN37819897-rid19814443.guided.033, whole genome shotgun sequence	37915..38352	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQETS010000107.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045855 SAMN37819897-rid19814443.denovo.110, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQETS010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045855 SAMN37819897-rid19814443.denovo.091, whole genome shotgun sequence	8006..8648		enterobacteriales	IncFII(S)	100	262 / 262	DAQETS010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045855 SAMN37819897-rid19814443.denovo.105, whole genome shotgun sequence	3410..3671																																									avrA	DAQETS010000007.1	115377..116246	99.54	870	0						
GCA_032705525.1_PDT001927825.1_genomic.fna	Salmonella_enterica	0.5211	367.872 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVUI010000001.1 Salmonella enterica strain PNUSAS390977 SAMN37806636-rid19712153.denovo.01, whole genome shotgun sequence	406656..407093	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVUI010000031.1 Salmonella enterica strain PNUSAS390977 SAMN37806636-rid19712153.guided.26, whole genome shotgun sequence	1310..1747	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVUI010000020.1 Salmonella enterica strain PNUSAS390977 SAMN37806636-rid19712153.denovo.22, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNVUI010000021.1 Salmonella enterica strain PNUSAS390977 SAMN37806636-rid19712153.denovo.23, whole genome shotgun sequence	3415..3676																																																avrA	ABNVUI010000002.1	174942..175811	99.54	870	0						
GCA_032705565.1_PDT001927824.1_genomic.fna	Salmonella_enterica	0.5213	238.81 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVUJ010000001.1 Salmonella enterica strain PNUSAS390972 SAMN37806638-rid19712143.denovo.01, whole genome shotgun sequence	458967..459404	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVUJ010000040.1 Salmonella enterica strain PNUSAS390972 SAMN37806638-rid19712143.denovo.45, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVUJ010000040.1 Salmonella enterica strain PNUSAS390972 SAMN37806638-rid19712143.denovo.45, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNVUJ010000057.1 Salmonella enterica strain PNUSAS390972 SAMN37806638-rid19712143.guided.40, whole genome shotgun sequence	3908..4345	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVUJ010000058.1 Salmonella enterica strain PNUSAS390972 SAMN37806638-rid19712143.guided.42, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVUJ010000058.1 Salmonella enterica strain PNUSAS390972 SAMN37806638-rid19712143.guided.42, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNVUJ010000043.1 Salmonella enterica strain PNUSAS390972 SAMN37806638-rid19712143.denovo.49, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNVUJ010000059.1 Salmonella enterica strain PNUSAS390972 SAMN37806638-rid19712143.guided.48, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNVUJ010000040.1 Salmonella enterica strain PNUSAS390972 SAMN37806638-rid19712143.denovo.45, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNVUJ010000058.1 Salmonella enterica strain PNUSAS390972 SAMN37806638-rid19712143.guided.42, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNVUJ010000033.1 Salmonella enterica strain PNUSAS390972 SAMN37806638-rid19712143.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNVUJ010000054.1 Salmonella enterica strain PNUSAS390972 SAMN37806638-rid19712143.guided.35, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	ABNVUJ010000017.1 Salmonella enterica strain PNUSAS390972 SAMN37806638-rid19712143.denovo.17, whole genome shotgun sequence	68616..68755																																																						avrA	ABNVUJ010000002.1	589457..590326	99.885	870	0						
GCA_032705585.1_PDT001927813.1_genomic.fna	Salmonella_enterica	0.5224	396.585 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNVUL010000001.1 Salmonella enterica strain PNUSAS390954 SAMN37806624-rid19713203.denovo.01, whole genome shotgun sequence	632232..632669	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNVUL010000027.1 Salmonella enterica strain PNUSAS390954 SAMN37806624-rid19713203.guided.16, whole genome shotgun sequence	22617..23054	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNVUL010000022.1 Salmonella enterica strain PNUSAS390954 SAMN37806624-rid19713203.denovo.26, whole genome shotgun sequence	1805..2449	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNVUL010000029.1 Salmonella enterica strain PNUSAS390954 SAMN37806624-rid19713203.guided.25, whole genome shotgun sequence	878..1522	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNVUL010000022.1 Salmonella enterica strain PNUSAS390954 SAMN37806624-rid19713203.denovo.26, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNVUL010000029.1 Salmonella enterica strain PNUSAS390954 SAMN37806624-rid19713203.guided.25, whole genome shotgun sequence	223..353																																																avrA	ABNVUL010000002.1	148520..149389	99.77	870	0						
GCA_032705605.1_PDT001927811.1_genomic.fna	Salmonella_enterica	0.5228	298.328 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNVUM010000001.1 Salmonella enterica strain PNUSAS390958 SAMN37806633-rid19712073.denovo.01, whole genome shotgun sequence	789104..789541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNVUM010000032.1 Salmonella enterica strain PNUSAS390958 SAMN37806633-rid19712073.guided.26, whole genome shotgun sequence	3261..3698	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVUM010000006.1	131918..132787	98.966	870	0						
GCA_032705615.1_PDT001927818.1_genomic.fna	Salmonella_enterica	0.522	277.605 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVUK010000003.1 Salmonella enterica strain PNUSAS390981 SAMN37806644-rid19713223.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVUK010000045.1 Salmonella enterica strain PNUSAS390981 SAMN37806644-rid19713223.guided.33, whole genome shotgun sequence	3868..4305	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVUK010000017.1 Salmonella enterica strain PNUSAS390981 SAMN37806644-rid19713223.denovo.17, whole genome shotgun sequence	48447..49089	enterobacteriales	IncFII(S)	100	262 / 262	ABNVUK010000017.1 Salmonella enterica strain PNUSAS390981 SAMN37806644-rid19713223.denovo.17, whole genome shotgun sequence	64174..64435																																																avrA	ABNVUK010000001.1	401421..402289	100	869	0						
GCA_032705645.1_PDT001927807.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVUN010000001.1 Salmonella enterica strain PNUSAS390986 SAMN37806641-rid19713173.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVUN010000028.1 Salmonella enterica strain PNUSAS390986 SAMN37806641-rid19713173.guided.19, whole genome shotgun sequence	9270..9707	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVUN010000016.1 Salmonella enterica strain PNUSAS390986 SAMN37806641-rid19713173.denovo.17, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNVUN010000018.1 Salmonella enterica strain PNUSAS390986 SAMN37806641-rid19713173.denovo.21, whole genome shotgun sequence	3416..3677																																																avrA	ABNVUN010000002.1	553575..554444	99.54	870	0						
GCA_032705665.1_PDT001927802.1_genomic.fna	Salmonella_enterica	0.5218	257.839 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVUP010000002.1 Salmonella enterica strain PNUSAS390976 SAMN37806630-rid19713153.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVUP010000056.1 Salmonella enterica strain PNUSAS390976 SAMN37806630-rid19713153.guided.39, whole genome shotgun sequence	5590..6027	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVUP010000018.1 Salmonella enterica strain PNUSAS390976 SAMN37806630-rid19713153.denovo.18, whole genome shotgun sequence	48457..49099	enterobacteriales	IncFII(S)	100	262 / 262	ABNVUP010000018.1 Salmonella enterica strain PNUSAS390976 SAMN37806630-rid19713153.denovo.18, whole genome shotgun sequence	64184..64445																																																avrA	ABNVUP010000001.1	446730..447598	100	869	0						
GCA_032705685.1_PDT001927800.1_genomic.fna	Salmonella_enterica	0.5218	207.445 KB	7	aroC_10,dnaN_7,hemD_370,hisD_9,purE_5,sucA_9,thrA_2	2076	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_370	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVUQ010000001.1 Salmonella enterica strain PNUSAS390982 SAMN37806632-rid19712023.denovo.01, whole genome shotgun sequence	233096..233533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	355/438	ABNVUQ010000053.1 Salmonella enterica strain PNUSAS390982 SAMN37806632-rid19712023.guided.31, whole genome shotgun sequence	1..355	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVUQ010000002.1	209627..210495	99.77	870	0						
GCA_032705705.1_PDT001927798.1_genomic.fna	Salmonella_enterica	0.5214	324.379 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVUO010000001.1 Salmonella enterica strain PNUSAS390956 SAMN37806631-rid19713133.denovo.01, whole genome shotgun sequence	635379..635816	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVUO010000041.1 Salmonella enterica strain PNUSAS390956 SAMN37806631-rid19713133.guided.28, whole genome shotgun sequence	7843..8280	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVUO010000015.1 Salmonella enterica strain PNUSAS390956 SAMN37806631-rid19713133.denovo.15, whole genome shotgun sequence	48408..49050	enterobacteriales	IncFII(S)	100	262 / 262	ABNVUO010000015.1 Salmonella enterica strain PNUSAS390956 SAMN37806631-rid19713133.denovo.15, whole genome shotgun sequence	64135..64396																																																avrA	ABNVUO010000004.1	174629..175498	99.885	870	0						
GCA_032705725.1_PDT001927797.1_genomic.fna	Salmonella_enterica	0.5154	232.417 KB	7	aroC_285,dnaN_26,hemD_30,hisD_144,purE_21,sucA_87,thrA_28	1195	47:k:z35	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_285	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_144	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	47	k	z35	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 47:k:z35		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVUS010000004.1 Salmonella enterica strain PNUSAS390974 SAMN37806645-rid19713123.denovo.04, whole genome shotgun sequence	120439..120876	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVUS010000046.1 Salmonella enterica strain PNUSAS390974 SAMN37806645-rid19713123.guided.23, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVUS010000008.1	38392..39261	96.322	870	0						
GCA_032705745.1_PDT001927799.1_genomic.fna	Salmonella_enterica	0.5215	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVUR010000001.1 Salmonella enterica strain PNUSAS390955 SAMN37806637-rid19713143.denovo.01, whole genome shotgun sequence	773788..774225	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVUR010000026.1 Salmonella enterica strain PNUSAS390955 SAMN37806637-rid19713143.guided.21, whole genome shotgun sequence	4647..5084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVUR010000016.1 Salmonella enterica strain PNUSAS390955 SAMN37806637-rid19713143.denovo.17, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNVUR010000017.1 Salmonella enterica strain PNUSAS390955 SAMN37806637-rid19713143.denovo.19, whole genome shotgun sequence	3393..3654																																																avrA	ABNVUR010000002.1	553642..554511	99.54	870	0						
GCA_032705765.1_PDT001927795.1_genomic.fna	Salmonella_enterica	0.5214	728.351 KB	2	aroC_11,dnaN_10,hemD_25,hisD_42,purE_10,sucA_13,thrA_4	1965	4:e,h:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(S)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_42	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNVUT010000001.1 Salmonella enterica strain PNUSAS390957 SAMN37806634-rid19712003.denovo.01, whole genome shotgun sequence	682970..683407	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNVUT010000029.1 Salmonella enterica strain PNUSAS390957 SAMN37806634-rid19712003.guided.19, whole genome shotgun sequence	8806..9243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.7	644 / 643	ABNVUT010000013.1 Salmonella enterica strain PNUSAS390957 SAMN37806634-rid19712003.denovo.14, whole genome shotgun sequence	2686..3328	enterobacteriales	IncFII(S)	97.34	263 / 262	ABNVUT010000012.1 Salmonella enterica strain PNUSAS390957 SAMN37806634-rid19712003.denovo.12, whole genome shotgun sequence	16284..16543																																																avrA	ABNVUT010000006.1	140317..141186	99.54	870	0						
GCA_032705785.1_PDT001927794.1_genomic.fna	Salmonella_enterica	0.5226	262.822 KB	6	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVUU010000008.1 Salmonella enterica strain PNUSAS390985 SAMN37806640-rid19713113.denovo.08, whole genome shotgun sequence	145586..146023	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVUU010000029.1 Salmonella enterica strain PNUSAS390985 SAMN37806640-rid19713113.denovo.31, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVUU010000029.1 Salmonella enterica strain PNUSAS390985 SAMN37806640-rid19713113.denovo.31, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVUU010000029.1 Salmonella enterica strain PNUSAS390985 SAMN37806640-rid19713113.denovo.31, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVUU010000029.1 Salmonella enterica strain PNUSAS390985 SAMN37806640-rid19713113.denovo.31, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVUU010000029.1 Salmonella enterica strain PNUSAS390985 SAMN37806640-rid19713113.denovo.31, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNVUU010000045.1 Salmonella enterica strain PNUSAS390985 SAMN37806640-rid19713113.guided.27, whole genome shotgun sequence	3755..4192	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVUU010000046.1 Salmonella enterica strain PNUSAS390985 SAMN37806640-rid19713113.guided.34, whole genome shotgun sequence	1681..2517	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVUU010000046.1 Salmonella enterica strain PNUSAS390985 SAMN37806640-rid19713113.guided.34, whole genome shotgun sequence	879..1681	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVUU010000046.1 Salmonella enterica strain PNUSAS390985 SAMN37806640-rid19713113.guided.34, whole genome shotgun sequence	878..1681	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVUU010000046.1 Salmonella enterica strain PNUSAS390985 SAMN37806640-rid19713113.guided.34, whole genome shotgun sequence	878..1681	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVUU010000046.1 Salmonella enterica strain PNUSAS390985 SAMN37806640-rid19713113.guided.34, whole genome shotgun sequence	878..1681	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNVUU010000030.1 Salmonella enterica strain PNUSAS390985 SAMN37806640-rid19713113.denovo.32, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVUU010000048.1 Salmonella enterica strain PNUSAS390985 SAMN37806640-rid19713113.guided.36, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNVUU010000049.1 Salmonella enterica strain PNUSAS390985 SAMN37806640-rid19713113.guided.37, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVUU010000009.1	39546..40415	99.655	870	0						
GCA_032705805.1_PDT001927793.1_genomic.fna	Salmonella_enterica	0.5214	304.38 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVUV010000001.1 Salmonella enterica strain PNUSAS390980 SAMN37806639-rid19713103.denovo.01, whole genome shotgun sequence	706576..707013	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVUV010000031.1 Salmonella enterica strain PNUSAS390980 SAMN37806639-rid19713103.guided.26, whole genome shotgun sequence	807..1244	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVUV010000020.1 Salmonella enterica strain PNUSAS390980 SAMN37806639-rid19713103.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNVUV010000022.1 Salmonella enterica strain PNUSAS390980 SAMN37806639-rid19713103.denovo.24, whole genome shotgun sequence	3402..3663																																																avrA	ABNVUV010000002.1	175197..176066	99.54	870	0						
GCA_032705815.1_PDT001927791.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVUW010000001.1 Salmonella enterica strain PNUSAS390984 SAMN37806626-rid19711993.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVUW010000017.1 Salmonella enterica strain PNUSAS390984 SAMN37806626-rid19711993.denovo.17, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNVUW010000018.1 Salmonella enterica strain PNUSAS390984 SAMN37806626-rid19711993.denovo.19, whole genome shotgun sequence	3400..3661																																																avrA	ABNVUW010000002.1	553636..554505	99.54	870	0						
GCA_032705845.1_PDT001927790.1_genomic.fna	Salmonella_enterica	0.5222	278.184 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVUX010000003.1 Salmonella enterica strain PNUSAS390971 SAMN37806643-rid19711983.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVUX010000040.1 Salmonella enterica strain PNUSAS390971 SAMN37806643-rid19711983.guided.30, whole genome shotgun sequence	8839..9276	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVUX010000023.1 Salmonella enterica strain PNUSAS390971 SAMN37806643-rid19711983.denovo.23, whole genome shotgun sequence	44735..45377	enterobacteriales	IncFII(S)	100	262 / 262	ABNVUX010000023.1 Salmonella enterica strain PNUSAS390971 SAMN37806643-rid19711983.denovo.23, whole genome shotgun sequence	29389..29650																																																avrA	ABNVUX010000001.1	446609..447477	100	869	0						
GCA_032705865.1_PDT001927789.1_genomic.fna	Salmonella_enterica	0.5199	364.92 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVUY010000001.1 Salmonella enterica strain PNUSAS390975 SAMN37806642-rid19711973.denovo.01, whole genome shotgun sequence	486102..486539	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVUY010000036.1 Salmonella enterica strain PNUSAS390975 SAMN37806642-rid19711973.guided.25, whole genome shotgun sequence	2213..2650	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNVUY010000004.1 Salmonella enterica strain PNUSAS390975 SAMN37806642-rid19711973.denovo.04, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNVUY010000035.1 Salmonella enterica strain PNUSAS390975 SAMN37806642-rid19711973.guided.24, whole genome shotgun sequence	15757..16179	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVUY010000002.1	173924..174793	99.195	870	0						
GCA_032705885.1_PDT001927788.1_genomic.fna	Salmonella_enterica	0.5211	644.38 KB	4	aroC_41,dnaN_673,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	4228	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_673	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVUZ010000004.1 Salmonella enterica strain PNUSAS390978 SAMN37806635-rid19713083.denovo.04, whole genome shotgun sequence	498751..499188	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVUZ010000017.1 Salmonella enterica strain PNUSAS390978 SAMN37806635-rid19713083.guided.12, whole genome shotgun sequence	5190..5627	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVUZ010000003.1	559618..560487	99.425	870	0						
GCA_032705925.1_PDT001927787.1_genomic.fna	Salmonella_enterica	0.5222	425.575 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNVVA010000004.1 Salmonella enterica strain PNUSAS390962 SAMN37806625-rid19713073.denovo.04, whole genome shotgun sequence	354324..354761	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNVVA010000025.1 Salmonella enterica strain PNUSAS390962 SAMN37806625-rid19713073.guided.18, whole genome shotgun sequence	5133..5570	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVVA010000001.1	131921..132790	98.966	870	0						
GCA_032706005.1_PDT001927671.1_genomic.fna	Salmonella_enterica	0.5202	381.28 KB	4	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	8	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,blaTEM-176,blaTEM-176,fosA7,fosA7,floR,floR,qnrS1,qnrS1,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	2	IncX1,p0111	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNVVD010000001.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.denovo.01, whole genome shotgun sequence	383907..384344	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.88	816/816	ABNVVD010000021.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.denovo.22, whole genome shotgun sequence	26141..26956	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EF015636	aac(6')-Iaa	97.26	438/438	ABNVVD010000035.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.guided.26, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.88	816/816	ABNVVD010000036.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.guided.27, whole genome shotgun sequence	148..963	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EF015636	blaTEM-176	100	861/861	ABNVVD010000021.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.denovo.22, whole genome shotgun sequence	211..1071	Unknown Beta-lactam	GU550123	blaTEM-176	100	861/861	ABNVVD010000040.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.guided.32, whole genome shotgun sequence	252..1112	Unknown Beta-lactam	GU550123	fosA7	100	423/423	ABNVVD010000005.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.denovo.05, whole genome shotgun sequence	38349..38771	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNVVD010000034.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.guided.24, whole genome shotgun sequence	19752..20174	Fosfomycin	LAPJ01000014	floR	98.11	1214/1215	ABNVVD010000024.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.denovo.31, whole genome shotgun sequence	914..2127	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNVVD010000039.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.guided.30, whole genome shotgun sequence	3744..4957	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNVVD010000025.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.denovo.34, whole genome shotgun sequence	737..1393	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNVVD010000041.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.guided.33, whole genome shotgun sequence	592..1248	Ciprofloxacin	AB187515	tet(A)	100	1275/1275	ABNVVD010000024.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.denovo.31, whole genome shotgun sequence	2728..4002	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNVVD010000039.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.guided.30, whole genome shotgun sequence	1869..3143	Doxycycline, Tetracycline	AF534183	dfrA14	100	474/474	ABNVVD010000026.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.denovo.36, whole genome shotgun sequence	182..655	Trimethoprim	KF921535	dfrA14	100	474/474	ABNVVD010000042.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.guided.35, whole genome shotgun sequence	1202..1675	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.93	374 / 374	ABNVVD010000021.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.denovo.22, whole genome shotgun sequence	5198..5571	enterobacteriales	p0111	98.42	885 / 885	ABNVVD010000013.1 Salmonella enterica strain PNUSAS390963 SAMN37806623-rid19705943.denovo.13, whole genome shotgun sequence	76574..77458																																																avrA	ABNVVD010000002.1	564274..565143	99.54	870	0						
GCA_032706025.1_PDT001927670.1_genomic.fna	Salmonella_enterica	0.5212	489.854 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVVC010000001.1 Salmonella enterica strain PNUSAS390961 SAMN37806043-rid19706843.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVVC010000022.1 Salmonella enterica strain PNUSAS390961 SAMN37806043-rid19706843.guided.14, whole genome shotgun sequence	34142..34579	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVVC010000016.1 Salmonella enterica strain PNUSAS390961 SAMN37806043-rid19706843.denovo.17, whole genome shotgun sequence	6842..7484	enterobacteriales	IncFII(S)	100	262 / 262	ABNVVC010000013.1 Salmonella enterica strain PNUSAS390961 SAMN37806043-rid19706843.denovo.13, whole genome shotgun sequence	3859..4120																																																avrA	ABNVVC010000002.1	553193..554062	99.54	870	0						
GCA_032706045.1_PDT001927668.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVVF010000001.1 Salmonella enterica strain PNUSAS390965 SAMN37806045-rid19710383.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVVF010000027.1 Salmonella enterica strain PNUSAS390965 SAMN37806045-rid19710383.guided.24, whole genome shotgun sequence	479..916	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVVF010000018.1 Salmonella enterica strain PNUSAS390965 SAMN37806045-rid19710383.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNVVF010000019.1 Salmonella enterica strain PNUSAS390965 SAMN37806045-rid19710383.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABNVVF010000002.1	553636..554505	99.54	870	0						
GCA_032706065.1_PDT001927669.1_genomic.fna	Salmonella_enterica	0.5209	443.067 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVVE010000001.1 Salmonella enterica strain PNUSAS390970 SAMN37806035-rid19709373.denovo.01, whole genome shotgun sequence	468173..468610	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVVE010000026.1 Salmonella enterica strain PNUSAS390970 SAMN37806035-rid19709373.guided.19, whole genome shotgun sequence	20206..20643	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNVVE010000014.1 Salmonella enterica strain PNUSAS390970 SAMN37806035-rid19709373.denovo.14, whole genome shotgun sequence	6063..6596																																																						avrA	ABNVVE010000011.1	150695..151565	99.196	871	0						
GCA_032706085.1_PDT001927672.1_genomic.fna	Salmonella_enterica	0.5203	278.897 KB	5	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNVVB010000001.1 Salmonella enterica strain PNUSAS390952 SAMN37806622-rid19708543.denovo.01, whole genome shotgun sequence	801934..802371	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNVVB010000039.1 Salmonella enterica strain PNUSAS390952 SAMN37806622-rid19708543.guided.25, whole genome shotgun sequence	15860..16297	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNVVB010000002.1 Salmonella enterica strain PNUSAS390952 SAMN37806622-rid19708543.denovo.02, whole genome shotgun sequence	312641..313063	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNVVB010000040.1 Salmonella enterica strain PNUSAS390952 SAMN37806622-rid19708543.guided.27, whole genome shotgun sequence	11418..11840	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVVB010000003.1	120837..121706	99.655	870	0						
GCA_032706105.1_PDT001927667.1_genomic.fna	Salmonella_enterica	0.5204	564.901 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNVVG010000001.1 Salmonella enterica strain PNUSAS390964 SAMN37806042-rid19709363.denovo.01, whole genome shotgun sequence	632241..632678	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNVVG010000024.1 Salmonella enterica strain PNUSAS390964 SAMN37806042-rid19709363.guided.20, whole genome shotgun sequence	2624..3061	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVVG010000002.1	544643..545511	99.425	870	0						
GCA_032706125.1_PDT001927666.1_genomic.fna	Salmonella_enterica	0.521	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVVH010000001.1 Salmonella enterica strain PNUSAS390960 SAMN37806046-rid19704713.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVVH010000026.1 Salmonella enterica strain PNUSAS390960 SAMN37806046-rid19704713.guided.14, whole genome shotgun sequence	13035..13472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVVH010000017.1 Salmonella enterica strain PNUSAS390960 SAMN37806046-rid19704713.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNVVH010000018.1 Salmonella enterica strain PNUSAS390960 SAMN37806046-rid19704713.denovo.20, whole genome shotgun sequence	3395..3656																																																avrA	ABNVVH010000002.1	553648..554517	99.54	870	0						
GCA_032706165.1_PDT001927665.1_genomic.fna	Salmonella_enterica	0.5213	406.452 KB	4	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVVI010000001.1 Salmonella enterica strain PNUSAS390979 SAMN37806047-rid19707543.denovo.01, whole genome shotgun sequence	779886..780323	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVVI010000030.1 Salmonella enterica strain PNUSAS390979 SAMN37806047-rid19707543.guided.21, whole genome shotgun sequence	5876..6313	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVVI010000015.1 Salmonella enterica strain PNUSAS390979 SAMN37806047-rid19707543.denovo.15, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABNVVI010000015.1 Salmonella enterica strain PNUSAS390979 SAMN37806047-rid19707543.denovo.15, whole genome shotgun sequence	55647..55908																																																avrA	ABNVVI010000002.1	506631..507500	99.54	870	0						
GCA_032706185.1_PDT001927662.1_genomic.fna	Salmonella_enterica	0.5204	406.451 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX4	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVVL010000001.1 Salmonella enterica strain PNUSAS390973 SAMN37806048-rid19708523.denovo.01, whole genome shotgun sequence	706633..707070	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVVL010000034.1 Salmonella enterica strain PNUSAS390973 SAMN37806048-rid19708523.guided.25, whole genome shotgun sequence	2362..2799	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVVL010000021.1 Salmonella enterica strain PNUSAS390973 SAMN37806048-rid19708523.denovo.23, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNVVL010000022.1 Salmonella enterica strain PNUSAS390973 SAMN37806048-rid19708523.denovo.24, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX4	100	374 / 374	ABNVVL010000019.1 Salmonella enterica strain PNUSAS390973 SAMN37806048-rid19708523.denovo.20, whole genome shotgun sequence	7852..8225																																									avrA	ABNVVL010000002.1	585342..586211	99.54	870	0						
GCA_032706205.1_PDT001927661.1_genomic.fna	Salmonella_enterica	0.5214	639.834 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNVVM010000001.1 Salmonella enterica strain PNUSAS390953 SAMN37806037-rid19705933.denovo.01, whole genome shotgun sequence	510516..510953	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNVVM010000024.1 Salmonella enterica strain PNUSAS390953 SAMN37806037-rid19705933.guided.18, whole genome shotgun sequence	7454..7891	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVVM010000003.1	544607..545475	99.425	870	0						
GCA_032706225.1_PDT001927664.1_genomic.fna	Salmonella_enterica	0.5224	470.544 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	2	aac(6')-Iaa,aac(6')-Iaa,tet(C),tet(C)	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNVVK010000001.1 Salmonella enterica strain PNUSAS390983 SAMN37806041-rid19708533.denovo.01, whole genome shotgun sequence	666962..667399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNVVK010000032.1 Salmonella enterica strain PNUSAS390983 SAMN37806041-rid19708533.guided.20, whole genome shotgun sequence	4639..5076	Amikacin, Tobramycin	NC_003197	tet(C)	100	1160/1176	ABNVVK010000013.1 Salmonella enterica strain PNUSAS390983 SAMN37806041-rid19708533.denovo.13, whole genome shotgun sequence	4092..5251	Doxycycline, Tetracycline	AY046276	tet(C)	100	1160/1176	ABNVVK010000034.1 Salmonella enterica strain PNUSAS390983 SAMN37806041-rid19708533.guided.22, whole genome shotgun sequence	1531..2690	Doxycycline, Tetracycline	AY046276																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNVVK010000013.1 Salmonella enterica strain PNUSAS390983 SAMN37806041-rid19708533.denovo.13, whole genome shotgun sequence	84124..84265																																																						avrA	ABNVVK010000003.1	407982..408851	99.31	870	0						
GCA_032706245.1_PDT001927663.1_genomic.fna	Salmonella_enterica	0.5209	655.988 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVVJ010000001.1 Salmonella enterica strain PNUSAS390966 SAMN37806044-rid19711403.denovo.01, whole genome shotgun sequence	383528..383965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVVJ010000040.1 Salmonella enterica strain PNUSAS390966 SAMN37806044-rid19711403.guided.19, whole genome shotgun sequence	10156..10593	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVVJ010000003.1	504323..505193	99.196	871	0						
GCA_032706265.1_PDT001927659.1_genomic.fna	Salmonella_enterica	0.5206	257.542 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncI2,IncP1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVVO010000001.1 Salmonella enterica strain PNUSAS390968 SAMN37806040-rid19705923.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVVO010000054.1 Salmonella enterica strain PNUSAS390968 SAMN37806040-rid19705923.guided.33, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	ABNVVO010000036.1 Salmonella enterica strain PNUSAS390968 SAMN37806040-rid19705923.denovo.39, whole genome shotgun sequence	965..1118	enterobacteriales	IncI2	99.69	324 / 324	ABNVVO010000031.1 Salmonella enterica strain PNUSAS390968 SAMN37806040-rid19705923.denovo.31, whole genome shotgun sequence	4707..5030		enterobacteriales	IncP1	99.87	745 / 745	ABNVVO010000027.1 Salmonella enterica strain PNUSAS390968 SAMN37806040-rid19705923.denovo.27, whole genome shotgun sequence	44519..45263																																									avrA	ABNVVO010000002.1	208425..209293	99.77	870	0						
GCA_032706275.1_PDT001927660.1_genomic.fna	Salmonella_enterica	0.5217	376.347 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVVN010000003.1 Salmonella enterica strain PNUSAS390967 SAMN37806036-rid19706833.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVVN010000036.1 Salmonella enterica strain PNUSAS390967 SAMN37806036-rid19706833.guided.25, whole genome shotgun sequence	20625..21062	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVVN010000017.1 Salmonella enterica strain PNUSAS390967 SAMN37806036-rid19706833.denovo.17, whole genome shotgun sequence	44751..45393	enterobacteriales	IncFII(S)	100	262 / 262	ABNVVN010000017.1 Salmonella enterica strain PNUSAS390967 SAMN37806036-rid19706833.denovo.17, whole genome shotgun sequence	29405..29666																																																avrA	ABNVVN010000001.1	446725..447593	100	869	0						
GCA_032706305.1_PDT001927658.1_genomic.fna	Salmonella_enterica	0.5209	397.531 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	10	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVVP010000001.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVVP010000025.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.denovo.26, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVVP010000025.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.denovo.26, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNVVP010000033.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.denovo.38, whole genome shotgun sequence	1052..2077	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNVVP010000033.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.denovo.38, whole genome shotgun sequence	47..823	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNVVP010000040.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.denovo.49, whole genome shotgun sequence	93..908	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	X62115	aadA1	99.75	792/792	ABNVVP010000047.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.guided.31, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVVP010000047.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.guided.31, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNVVP010000049.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.guided.34, whole genome shotgun sequence	9641..10078	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNVVP010000050.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.guided.37, whole genome shotgun sequence	1093..2118	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNVVP010000050.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.guided.37, whole genome shotgun sequence	88..864	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNVVP010000054.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.guided.48, whole genome shotgun sequence	128..943	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	X62115	blaCTX-M-65	100	876/876	ABNVVP010000036.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.denovo.42, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNVVP010000052.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.guided.43, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNVVP010000037.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.denovo.44, whole genome shotgun sequence	320..736	Fosfomycin	AB522970	fosA3	100	417/417	ABNVVP010000053.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.guided.46, whole genome shotgun sequence	361..777	Fosfomycin	AB522970	sul1	100	840/840	ABNVVP010000025.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.denovo.26, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNVVP010000047.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.guided.31, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNVVP010000025.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.denovo.26, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVVP010000047.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.guided.31, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNVVP010000032.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.denovo.36, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNVVP010000051.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.guided.40, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVVP010000029.1 Salmonella enterica strain PNUSAS390959 SAMN37806039-rid19710373.denovo.30, whole genome shotgun sequence	9109..9668																																																						avrA	ABNVVP010000003.1	95072..95941	99.655	870	0						
GCA_032706345.1_PDT001927657.1_genomic.fna	Salmonella_enterica	0.5231	269.597 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVVR010000001.1 Salmonella enterica strain PNUSAS390969 SAMN37806038-rid19709353.denovo.01, whole genome shotgun sequence	460173..460610	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVVR010000034.1 Salmonella enterica strain PNUSAS390969 SAMN37806038-rid19709353.guided.25, whole genome shotgun sequence	3276..3713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVVR010000004.1	149829..150698	99.655	870	0						
GCA_032706365.1_PDT001927648.1_genomic.fna	Salmonella_enterica	0.5116	215.719 KB	9	aroC_145,dnaN_26,hemD_30,hisD_55,purE_21,sucA_87,thrA_28	1006	35:r:e,n,x,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_145	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_55	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	35	r	e,n,x,z15	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 35:r:e,n,x,z15		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVVS010000001.1 Salmonella enterica strain PNUSAS390917 SAMN37806017-rid19710363.denovo.01, whole genome shotgun sequence	116232..116668	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVVS010000077.1 Salmonella enterica strain PNUSAS390917 SAMN37806017-rid19710363.guided.47, whole genome shotgun sequence	3117..3553	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVVS010000007.1	154900..155769	96.437	870	0						
GCA_032706385.1_PDT001790636.1_genomic.fna	Salmonella_enterica	0.5209	430.98 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVVT010000009.1 Salmonella enterica strain PNUSAS358447 SAMN35989177-rid18558033.denovo.09, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVVT010000031.1 Salmonella enterica strain PNUSAS358447 SAMN35989177-rid18558033.guided.21, whole genome shotgun sequence	5057..5494	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNVVT010000018.1 Salmonella enterica strain PNUSAS358447 SAMN35989177-rid18558033.denovo.18, whole genome shotgun sequence	34957..35490																																																						avrA	ABNVVT010000004.1	39481..40347	98.966	870	0						
GCA_032706585.1_PDT001790618.1_genomic.fna	Salmonella_enterica	0.5212	222.463 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVWD010000001.1 Salmonella enterica strain PNUSAS358407 SAMN35984409-rid18557893.denovo.01, whole genome shotgun sequence	480588..481025	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVWD010000049.1 Salmonella enterica strain PNUSAS358407 SAMN35984409-rid18557893.guided.28, whole genome shotgun sequence	18592..19029	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVWD010000030.1 Salmonella enterica strain PNUSAS358407 SAMN35984409-rid18557893.denovo.32, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNVWD010000030.1 Salmonella enterica strain PNUSAS358407 SAMN35984409-rid18557893.denovo.32, whole genome shotgun sequence	9325..9586																																																avrA	ABNVWD010000002.1	209215..210084	99.885	870	0						
GCA_032706645.1_PDT001790617.1_genomic.fna	Salmonella_enterica	0.5206	337.765 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVWC010000001.1 Salmonella enterica strain PNUSAS358411 SAMN35984418-rid18557883.denovo.01, whole genome shotgun sequence	414591..415028	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVWC010000024.1 Salmonella enterica strain PNUSAS358411 SAMN35984418-rid18557883.guided.19, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032708935.1_PDT001790459.1_genomic.fna	Salmonella_enterica	0.5195	48.8 KB	32	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVWE010000007.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313348 SAMN35987649-rid18556313.denovo.007, whole genome shotgun sequence	80338..80775	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVWE010000090.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313348 SAMN35987649-rid18556313.denovo.092, whole genome shotgun sequence	4340..5176	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVWE010000090.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313348 SAMN35987649-rid18556313.denovo.092, whole genome shotgun sequence	3538..4340	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVWE010000090.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313348 SAMN35987649-rid18556313.denovo.092, whole genome shotgun sequence	3537..4340	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVWE010000090.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313348 SAMN35987649-rid18556313.denovo.092, whole genome shotgun sequence	3537..4340	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVWE010000090.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313348 SAMN35987649-rid18556313.denovo.092, whole genome shotgun sequence	3537..4340	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNVWE010000231.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313348 SAMN35987649-rid18556313.guided.062, whole genome shotgun sequence	15576..16013	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVWE010000233.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313348 SAMN35987649-rid18556313.guided.111, whole genome shotgun sequence	4381..5217	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVWE010000233.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313348 SAMN35987649-rid18556313.guided.111, whole genome shotgun sequence	3579..4381	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVWE010000233.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313348 SAMN35987649-rid18556313.guided.111, whole genome shotgun sequence	3578..4381	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVWE010000233.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313348 SAMN35987649-rid18556313.guided.111, whole genome shotgun sequence	3578..4381	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVWE010000233.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313348 SAMN35987649-rid18556313.guided.111, whole genome shotgun sequence	3578..4381	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	290 / 327	ABNVWE010000137.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313348 SAMN35987649-rid18556313.denovo.141, whole genome shotgun sequence	1..290	enterobacteriales	IncHI2A	99.52	630 / 630	ABNVWE010000127.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313348 SAMN35987649-rid18556313.denovo.131, whole genome shotgun sequence	583..1212		enterobacteriales	IncX1	100	373 / 373	ABNVWE010000184.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313348 SAMN35987649-rid18556313.denovo.188, whole genome shotgun sequence	1118..1490																																									avrA	ABNVWE010000036.1	39484..40353	99.655	870	0						
GCA_032708985.1_PDT001790451.1_genomic.fna	Salmonella_enterica	0.5218	47.621 KB	31	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		2	Col(pHAD28),IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVWF010000071.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313351 SAMN35987648-rid18556233.denovo.072, whole genome shotgun sequence	14104..14541	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNVWF010000088.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313351 SAMN35987648-rid18556233.denovo.091, whole genome shotgun sequence	12506..13408	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNVWF010000088.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313351 SAMN35987648-rid18556233.denovo.091, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNVWF010000176.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313351 SAMN35987648-rid18556233.guided.078, whole genome shotgun sequence	14158..14595	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNVWF010000180.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313351 SAMN35987648-rid18556233.guided.129, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNVWF010000181.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313351 SAMN35987648-rid18556233.guided.145, whole genome shotgun sequence	2402..3193	Spectinomycin, Streptomycin	JQ414041	sul2	100	816/816	ABNVWF010000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313351 SAMN35987648-rid18556233.denovo.027, whole genome shotgun sequence	5050..5865	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNVWF010000088.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313351 SAMN35987648-rid18556233.denovo.091, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul2	100	816/816	ABNVWF010000175.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313351 SAMN35987648-rid18556233.guided.026, whole genome shotgun sequence	49599..50414	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNVWF010000179.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313351 SAMN35987648-rid18556233.guided.127, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABNVWF010000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313351 SAMN35987648-rid18556233.denovo.027, whole genome shotgun sequence	1674..2873	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNVWF010000145.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313351 SAMN35987648-rid18556233.denovo.153, whole genome shotgun sequence	99..1289	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABNVWF010000175.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313351 SAMN35987648-rid18556233.guided.026, whole genome shotgun sequence	52591..53790	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNVWF010000182.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313351 SAMN35987648-rid18556233.guided.151, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNVWF010000132.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313351 SAMN35987648-rid18556233.denovo.138, whole genome shotgun sequence	371..501	enterobacteriales	IncX4	100	374 / 374	ABNVWF010000162.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313351 SAMN35987648-rid18556233.denovo.170, whole genome shotgun sequence	226..599																																																avrA	ABNVWF010000011.1	81753..82622	99.885	870	0						
GCA_032709005.1_PDT001790450.1_genomic.fna	Salmonella_enterica	0.5237	49.328 KB	32	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aadA1,aadA1,aac(6')-Iaa,aph(3')-Ia,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVWG010000022.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313347 SAMN35987646-rid18556223.denovo.022, whole genome shotgun sequence	12526..12963	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNVWG010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313347 SAMN35987646-rid18556223.denovo.078, whole genome shotgun sequence	18509..19300	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVWG010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313347 SAMN35987646-rid18556223.denovo.078, whole genome shotgun sequence	18509..19300	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNVWG010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313347 SAMN35987646-rid18556223.denovo.192, whole genome shotgun sequence	93..908	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aadA1	99.75	792/792	ABNVWG010000207.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313347 SAMN35987646-rid18556223.guided.082, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNVWG010000207.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313347 SAMN35987646-rid18556223.guided.082, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNVWG010000209.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313347 SAMN35987646-rid18556223.guided.113, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNVWG010000210.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313347 SAMN35987646-rid18556223.guided.191, whole genome shotgun sequence	127..942	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	sul1	100	840/840	ABNVWG010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313347 SAMN35987646-rid18556223.denovo.078, whole genome shotgun sequence	17165..18004	Sulfamethoxazole	U12338	sul1	100	840/840	ABNVWG010000207.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313347 SAMN35987646-rid18556223.guided.082, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNVWG010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313347 SAMN35987646-rid18556223.denovo.078, whole genome shotgun sequence	3449..4648	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVWG010000207.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313347 SAMN35987646-rid18556223.guided.082, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVWG010000132.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313347 SAMN35987646-rid18556223.denovo.136, whole genome shotgun sequence	5371..5930																																																						avrA	ABNVWG010000023.1	61402..62271	99.655	870	0						
GCA_032709025.1_PDT001790448.1_genomic.fna	Salmonella_enterica	0.5211	257.837 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVWJ010000002.1 Salmonella enterica strain PNUSAS358418 SAMN35984416-rid18556203.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVWJ010000052.1 Salmonella enterica strain PNUSAS358418 SAMN35984416-rid18556203.guided.23, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVWJ010000024.1 Salmonella enterica strain PNUSAS358418 SAMN35984416-rid18556203.denovo.25, whole genome shotgun sequence	44720..45362	enterobacteriales	IncFII(S)	100	262 / 262	ABNVWJ010000024.1 Salmonella enterica strain PNUSAS358418 SAMN35984416-rid18556203.denovo.25, whole genome shotgun sequence	29374..29635		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNVWJ010000020.1 Salmonella enterica strain PNUSAS358418 SAMN35984416-rid18556203.denovo.20, whole genome shotgun sequence	67737..67878																																									avrA	ABNVWJ010000007.1	143077..143945	100	869	0						
GCA_032709065.1_PDT001790449.1_genomic.fna	Salmonella_enterica	0.522	96.303 KB	17	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVWH010000029.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313332 SAMN35985396-rid18556213.denovo.029, whole genome shotgun sequence	17216..17653	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVWH010000103.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313332 SAMN35985396-rid18556213.guided.052, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVWH010000063.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313332 SAMN35985396-rid18556213.denovo.065, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNVWH010000073.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313332 SAMN35985396-rid18556213.denovo.076, whole genome shotgun sequence	3387..3648																																																avrA	ABNVWH010000010.1	43592..44461	99.54	870	0						
GCA_032709085.1_PDT001790445.1_genomic.fna	Salmonella_enterica	0.5209	255.87 KB	6	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNVWL010000007.1 Salmonella enterica strain PNUSAS358420 SAMN35984422-rid18556173.denovo.07, whole genome shotgun sequence	79916..80353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNVWL010000042.1 Salmonella enterica strain PNUSAS358420 SAMN35984422-rid18556173.guided.25, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	95.65	138 / 142	ABNVWL010000020.1 Salmonella enterica strain PNUSAS358420 SAMN35984422-rid18556173.denovo.22, whole genome shotgun sequence	17345..17480																																																						avrA	ABNVWL010000002.1	144854..145723	99.31	870	0						
GCA_032709105.1_PDT001790446.1_genomic.fna	Salmonella_enterica	0.5213	333.002 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVWK010000001.1 Salmonella enterica strain PNUSAS358412 SAMN35984419-rid18556183.denovo.01, whole genome shotgun sequence	573968..574405	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVWK010000047.1 Salmonella enterica strain PNUSAS358412 SAMN35984419-rid18556183.guided.34, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNVWK010000027.1 Salmonella enterica strain PNUSAS358412 SAMN35984419-rid18556183.denovo.28, whole genome shotgun sequence	9109..9668																																																						avrA	ABNVWK010000003.1	39430..40299	99.655	870	0						
GCA_032709125.1_PDT001790442.1_genomic.fna	Salmonella_enterica	0.5215	192.234 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVWO010000002.1 Salmonella enterica strain PNUSAS358414 SAMN35984421-rid18556143.denovo.02, whole genome shotgun sequence	145592..146029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVWO010000048.1 Salmonella enterica strain PNUSAS358414 SAMN35984421-rid18556143.guided.31, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVWO010000005.1	94139..95007	99.77	870	0						
GCA_032709135.1_PDT001790444.1_genomic.fna	Salmonella_enterica	0.5213	275.099 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVWM010000001.1 Salmonella enterica strain PNUSAS358413 SAMN35984420-rid18556163.denovo.01, whole genome shotgun sequence	381672..382109	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVWM010000037.1 Salmonella enterica strain PNUSAS358413 SAMN35984420-rid18556163.guided.28, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVWM010000005.1	94139..95007	99.77	870	0						
GCA_032709165.1_PDT001790443.1_genomic.fna	Salmonella_enterica	0.5207	296.236 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNVWN010000001.1 Salmonella enterica strain PNUSAS358415 SAMN35984411-rid18556153.denovo.01, whole genome shotgun sequence	167933..168370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNVWN010000034.1 Salmonella enterica strain PNUSAS358415 SAMN35984411-rid18556153.guided.23, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNVWN010000017.1 Salmonella enterica strain PNUSAS358415 SAMN35984411-rid18556153.denovo.17, whole genome shotgun sequence	68663..68804																																																						avrA	ABNVWN010000002.1	144915..145784	99.31	870	0						
GCA_032709185.1_PDT001790440.1_genomic.fna	Salmonella_enterica	0.5194	312.17 KB	7	aroC_1323,dnaN_73,hemD_15,hisD_122,purE_5,sucA_9,thrA_22	Unknown	4:e,h:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_1323	dnaN	100	100	dnaN_73	hemD	100	100	hemD_15	hisD	100	100	hisD_122	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_22	4	e,h	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:e,h:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNVWQ010000004.1 Salmonella enterica strain PNUSAS358409 SAMN35984406-rid18556123.denovo.04, whole genome shotgun sequence	223731..224168	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNVWQ010000047.1 Salmonella enterica strain PNUSAS358409 SAMN35984406-rid18556123.guided.23, whole genome shotgun sequence	16418..16855	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032709205.1_PDT001790441.1_genomic.fna	Salmonella_enterica	0.5165	346.068 KB	6	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNVWP010000006.1 Salmonella enterica strain PNUSAS358410 SAMN35984408-rid18556133.denovo.06, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNVWP010000056.1 Salmonella enterica strain PNUSAS358410 SAMN35984408-rid18556133.guided.38, whole genome shotgun sequence	4407..4844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNVWP010000010.1 Salmonella enterica strain PNUSAS358410 SAMN35984408-rid18556133.denovo.10, whole genome shotgun sequence	117025..117667																																																																	
GCA_032709225.1_PDT001790437.1_genomic.fna	Salmonella_enterica	0.5217	361.677 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVWT010000001.1 Salmonella enterica strain PNUSAS358419 SAMN35984413-rid18556093.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVWT010000034.1 Salmonella enterica strain PNUSAS358419 SAMN35984413-rid18556093.guided.12, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNVWT010000023.1 Salmonella enterica strain PNUSAS358419 SAMN35984413-rid18556093.denovo.26, whole genome shotgun sequence	1506..1636																																																						avrA	ABNVWT010000008.1	39407..40276	98.966	870	0						
GCA_032709245.1_PDT001790438.1_genomic.fna	Salmonella_enterica	0.5202	209.406 KB	9	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVWS010000002.1 Salmonella enterica strain PNUSAS358408 SAMN35984400-rid18556103.denovo.02, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVWS010000055.1 Salmonella enterica strain PNUSAS358408 SAMN35984400-rid18556103.guided.37, whole genome shotgun sequence	8104..8541	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.08	131 / 131	ABNVWS010000041.1 Salmonella enterica strain PNUSAS358408 SAMN35984400-rid18556103.denovo.44, whole genome shotgun sequence	254..384	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNVWS010000023.1 Salmonella enterica strain PNUSAS358408 SAMN35984400-rid18556103.denovo.23, whole genome shotgun sequence	5908..6441																																																avrA	ABNVWS010000007.1	188228..189097	99.425	870	0						
GCA_032709265.1_PDT001790439.1_genomic.fna	Salmonella_enterica	0.5221	363.129 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVWR010000001.1 Salmonella enterica strain PNUSAS358417 SAMN35984403-rid18556113.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVWR010000031.1 Salmonella enterica strain PNUSAS358417 SAMN35984403-rid18556113.guided.24, whole genome shotgun sequence	8322..8759	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNVWR010000023.1 Salmonella enterica strain PNUSAS358417 SAMN35984403-rid18556113.denovo.26, whole genome shotgun sequence	1506..1636																																																						avrA	ABNVWR010000006.1	95178..96047	98.966	870	0						
GCA_032709285.1_PDT001790436.1_genomic.fna	Salmonella_enterica	0.5213	258.05 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVWU010000001.1 Salmonella enterica strain PNUSAS358416 SAMN35984402-rid18556083.denovo.01, whole genome shotgun sequence	456877..457314	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVWU010000053.1 Salmonella enterica strain PNUSAS358416 SAMN35984402-rid18556083.guided.25, whole genome shotgun sequence	15526..15963	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVWU010000029.1 Salmonella enterica strain PNUSAS358416 SAMN35984402-rid18556083.denovo.31, whole genome shotgun sequence	24692..25334	enterobacteriales	IncFII(S)	100	262 / 262	ABNVWU010000029.1 Salmonella enterica strain PNUSAS358416 SAMN35984402-rid18556083.denovo.31, whole genome shotgun sequence	9346..9607																																																avrA	ABNVWU010000005.1	94139..95008	99.885	870	0						
GCA_032709325.1_PDT001790421.1_genomic.fna	Salmonella_enterica	0.5232	85.44 KB	19	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVWY010000054.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313336 SAMN35985444-rid18555933.denovo.054, whole genome shotgun sequence	14355..14792	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVWY010000079.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313336 SAMN35985444-rid18555933.denovo.082, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVWY010000079.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313336 SAMN35985444-rid18555933.denovo.082, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVWY010000079.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313336 SAMN35985444-rid18555933.denovo.082, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVWY010000079.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313336 SAMN35985444-rid18555933.denovo.082, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVWY010000079.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313336 SAMN35985444-rid18555933.denovo.082, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNVWY010000109.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313336 SAMN35985444-rid18555933.guided.079, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVWY010000111.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313336 SAMN35985444-rid18555933.guided.096, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNVWY010000111.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313336 SAMN35985444-rid18555933.guided.096, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNVWY010000111.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313336 SAMN35985444-rid18555933.guided.096, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVWY010000111.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313336 SAMN35985444-rid18555933.guided.096, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNVWY010000111.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313336 SAMN35985444-rid18555933.guided.096, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNVWY010000084.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313336 SAMN35985444-rid18555933.denovo.088, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNVWY010000110.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313336 SAMN35985444-rid18555933.guided.087, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVWY010000024.1	61246..62115	99.655	870	0						
GCA_032709345.1_PDT001790424.1_genomic.fna	Salmonella_enterica	0.5241	58.921 KB	27	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	-:g,m,s:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVWW010000064.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313342 SAMN35985450-rid18555963.denovo.065, whole genome shotgun sequence	11341..11778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVWW010000156.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313342 SAMN35985450-rid18555963.guided.080, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNVWW010000158.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313342 SAMN35985450-rid18555963.guided.137, whole genome shotgun sequence	1102..2307	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNVWW010000123.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313342 SAMN35985450-rid18555963.denovo.127, whole genome shotgun sequence	114..255																																																																	
GCA_032709365.1_PDT001790423.1_genomic.fna	Salmonella_enterica	0.5226	84.893 KB	18	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVWX010000020.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313340 SAMN35985447-rid18555953.denovo.020, whole genome shotgun sequence	25615..26052	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVWX010000120.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313340 SAMN35985447-rid18555953.guided.034, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVWX010000081.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313340 SAMN35985447-rid18555953.denovo.083, whole genome shotgun sequence	6833..7475	enterobacteriales	IncFII(S)	100	262 / 262	ABNVWX010000091.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313340 SAMN35985447-rid18555953.denovo.094, whole genome shotgun sequence	3256..3517																																																avrA	ABNVWX010000006.1	149456..150325	99.54	870	0						
GCA_032709385.1_PDT001790420.1_genomic.fna	Salmonella_enterica	0.5222	74.198 KB	23	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVWZ010000025.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313345 SAMN35987644-rid18555923.denovo.025, whole genome shotgun sequence	15476..15913	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNVWZ010000029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313345 SAMN35987644-rid18555923.denovo.029, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNVWZ010000144.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313345 SAMN35987644-rid18555923.guided.037, whole genome shotgun sequence	31510..31947	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNVWZ010000150.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313345 SAMN35987644-rid18555923.guided.137, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNVWZ010000095.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313345 SAMN35987644-rid18555923.denovo.098, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNVWZ010000149.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313345 SAMN35987644-rid18555923.guided.131, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNVWZ010000095.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313345 SAMN35987644-rid18555923.denovo.098, whole genome shotgun sequence	6603..7817	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNVWZ010000147.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313345 SAMN35987644-rid18555923.guided.101, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNVWZ010000148.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313345 SAMN35987644-rid18555923.guided.123, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNVWZ010000095.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313345 SAMN35987644-rid18555923.denovo.098, whole genome shotgun sequence	4491..5666	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNVWZ010000147.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313345 SAMN35987644-rid18555923.guided.101, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	Col440I	92.04	113 / 114	ABNVWZ010000116.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313345 SAMN35987644-rid18555923.denovo.120, whole genome shotgun sequence	1334..1446	enterobacteriales	IncFIB(S)	100	643 / 643	ABNVWZ010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313345 SAMN35987644-rid18555923.denovo.096, whole genome shotgun sequence	6821..7463		enterobacteriales	IncFII(S)	100	262 / 262	ABNVWZ010000088.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313345 SAMN35987644-rid18555923.denovo.091, whole genome shotgun sequence	9325..9586																																									avrA	ABNVWZ010000008.1	106382..107251	99.885	870	0						
GCA_032709405.1_PDT001790419.1_genomic.fna	Salmonella_enterica	0.5213	88.71 KB	17	aroC_62,dnaN_95,hemD_54,hisD_96,purE_100,sucA_9,thrA_100	279	-:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_62	dnaN	100	100	dnaN_95	hemD	100	100	hemD_54	hisD	100	100	hisD_96	purE	100	100	purE_100	sucA	100	100	sucA_9	thrA	100	100	thrA_100	-	d	-	Salmonella enterica subspecies enterica (subspecies I)	I -:d:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNVXA010000001.1 Salmonella enterica subsp. enterica strain FSIS22313333 SAMN35985397-rid18555913.denovo.001, whole genome shotgun sequence	12516..12953	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNVXA010000119.1 Salmonella enterica subsp. enterica strain FSIS22313333 SAMN35985397-rid18555913.guided.053, whole genome shotgun sequence	14406..14843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVXA010000016.1	81778..82647	99.31	870	0						
GCA_032709425.1_PDT001790418.1_genomic.fna	Salmonella_enterica	0.5226	58.324 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVXB010000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313337 SAMN35985445-rid18555903.denovo.009, whole genome shotgun sequence	83557..83994	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVXB010000149.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313337 SAMN35985445-rid18555903.guided.080, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVXB010000103.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313337 SAMN35985445-rid18555903.denovo.106, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNVXB010000043.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313337 SAMN35985445-rid18555903.denovo.043, whole genome shotgun sequence	29451..29712																																																avrA	ABNVXB010000004.1	100828..101697	99.885	870	0						
GCA_032709445.1_PDT001790415.1_genomic.fna	Salmonella_enterica	0.5217	342.03 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNVXC010000001.1 Salmonella enterica strain PNUSAS358365 SAMN35984030-rid18555883.denovo.01, whole genome shotgun sequence	482146..482583	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNVXC010000031.1 Salmonella enterica strain PNUSAS358365 SAMN35984030-rid18555883.guided.22, whole genome shotgun sequence	6971..7408	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVXC010000007.1	128611..129480	99.77	870	0						
GCA_032709465.1_PDT001790414.1_genomic.fna	Salmonella_enterica	0.5199	345.018 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVXD010000004.1 Salmonella enterica strain PNUSAS358348 SAMN35984019-rid18555803.denovo.04, whole genome shotgun sequence	218029..218466	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVXD010000036.1 Salmonella enterica strain PNUSAS358348 SAMN35984019-rid18555803.guided.20, whole genome shotgun sequence	36086..36523	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVXD010000010.1	39601..40470	99.425	870	0						
GCA_032709485.1_PDT001790412.1_genomic.fna	Salmonella_enterica	0.5214	263.799 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVXF010000001.1 Salmonella enterica strain PNUSAS358346 SAMN35984021-rid18555873.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVXF010000043.1 Salmonella enterica strain PNUSAS358346 SAMN35984021-rid18555873.guided.34, whole genome shotgun sequence	1791..2228	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVXF010000019.1	39419..40289	99.196	871	0						
GCA_032709505.1_PDT001790413.1_genomic.fna	Salmonella_enterica	0.5198	161.062 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaTEM-1B,blaCTX-M-15,blaTEM-1B,catA1,catA1,qnrS1,qnrS1,sul1,sul1,sul2,sul2,sul2,sul2,dfrA7,dfrA7	1	gyrA_p.S83F	1	IncY	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNVXE010000010.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVXE010000058.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.denovo.64, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVXE010000058.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.denovo.64, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	ABNVXE010000076.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.guided.42, whole genome shotgun sequence	3962..4396	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVXE010000080.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.guided.70, whole genome shotgun sequence	821..1657	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNVXE010000080.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.guided.70, whole genome shotgun sequence	18..821	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNVXE010000081.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.guided.71, whole genome shotgun sequence	821..1657	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVXE010000081.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.guided.71, whole genome shotgun sequence	18..821	Streptomycin	AF321551	blaCTX-M-15	100	876/876	ABNVXE010000043.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.denovo.46, whole genome shotgun sequence	13409..14284	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	ABNVXE010000061.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.denovo.67, whole genome shotgun sequence	702..1562	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-15	100	876/876	ABNVXE010000077.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.guided.55, whole genome shotgun sequence	2426..3301	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	ABNVXE010000083.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.guided.76, whole genome shotgun sequence	437..1297	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	ABNVXE010000066.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.denovo.75, whole genome shotgun sequence	223..882	Chloramphenicol	V00622	catA1	99.85	660/660	ABNVXE010000082.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.guided.74, whole genome shotgun sequence	262..921	Chloramphenicol	V00622	qnrS1	100	657/657	ABNVXE010000043.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.denovo.46, whole genome shotgun sequence	8112..8768	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNVXE010000079.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.guided.59, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul1	100	840/840	ABNVXE010000049.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.denovo.52, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul1	100	840/840	ABNVXE010000078.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.guided.58, whole genome shotgun sequence	4845..5684	Sulfamethoxazole	U12338	sul2	100	816/816	ABNVXE010000084.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.guided.79, whole genome shotgun sequence	93..908	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNVXE010000085.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.guided.80, whole genome shotgun sequence	93..908	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNVXE010000086.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.guided.81, whole genome shotgun sequence	93..908	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNVXE010000087.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.guided.82, whole genome shotgun sequence	93..908	Sulfamethoxazole	AY034138	dfrA7	100	474/474	ABNVXE010000049.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.denovo.52, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	ABNVXE010000078.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.guided.58, whole genome shotgun sequence	3801..4274	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncY	98.82	765 / 765	ABNVXE010000038.1 Salmonella enterica strain PNUSAS358386 SAMN35984032-rid18555793.denovo.40, whole genome shotgun sequence	3031..3795																																																																	
GCA_032709525.1_PDT001790411.1_genomic.fna	Salmonella_enterica	0.5223	307.243 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVXG010000002.1 Salmonella enterica strain PNUSAS358347 SAMN35984020-rid18555863.denovo.02, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVXG010000037.1 Salmonella enterica strain PNUSAS358347 SAMN35984020-rid18555863.guided.31, whole genome shotgun sequence	3793..4230	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVXG010000003.1	39462..40331	99.31	870	0						
GCA_032709545.1_PDT001790410.1_genomic.fna	Salmonella_enterica	0.5223	417.218 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVXH010000001.1 Salmonella enterica strain PNUSAS358350 SAMN35984023-rid18555783.denovo.01, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVXH010000031.1 Salmonella enterica strain PNUSAS358350 SAMN35984023-rid18555783.guided.21, whole genome shotgun sequence	298..735	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVXH010000003.1	182949..183818	98.966	870	0						
GCA_032709565.1_PDT001790409.1_genomic.fna	Salmonella_enterica	0.5203	456.341 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),pSL483	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVXI010000005.1 Salmonella enterica strain PNUSAS358349 SAMN35984018-rid18555773.denovo.05, whole genome shotgun sequence	162638..163075	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVXI010000032.1 Salmonella enterica strain PNUSAS358349 SAMN35984018-rid18555773.guided.19, whole genome shotgun sequence	43114..43551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVXI010000017.1 Salmonella enterica strain PNUSAS358349 SAMN35984018-rid18555773.denovo.18, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNVXI010000017.1 Salmonella enterica strain PNUSAS358349 SAMN35984018-rid18555773.denovo.18, whole genome shotgun sequence	5032..5293		enterobacteriales	pSL483	91.77	996 / 995	ABNVXI010000018.1 Salmonella enterica strain PNUSAS358349 SAMN35984018-rid18555773.denovo.20, whole genome shotgun sequence	16712..17706																																									avrA	ABNVXI010000001.1	553077..553946	99.54	870	0						
GCA_032709585.1_PDT001790408.1_genomic.fna	Salmonella_enterica	0.5139	367.662 KB	6	aroC_88,dnaN_26,hemD_339,hisD_55,purE_21,sucA_425,thrA_28	1854	61:c:1,5,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_339	hisD	100	100	hisD_55	purE	100	100	purE_21	sucA	100	100	sucA_425	thrA	100	100	thrA_28	61	c	1,5,7	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:c:1,5,(7)		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNVXJ010000001.1 Salmonella enterica strain PNUSAS358385 SAMN35984031-rid18555763.denovo.01, whole genome shotgun sequence	121824..122261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNVXJ010000043.1 Salmonella enterica strain PNUSAS358385 SAMN35984031-rid18555763.guided.22, whole genome shotgun sequence	17037..17474	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVXJ010000003.1	165466..166335	96.437	870	0						
GCA_032709645.1_PDT001790405.1_genomic.fna	Salmonella_enterica	0.5225	244.38 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNVXM010000001.1 Salmonella enterica strain PNUSAS358345 SAMN35984022-rid18555833.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNVXM010000035.1 Salmonella enterica strain PNUSAS358345 SAMN35984022-rid18555833.guided.18, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVXM010000003.1	39430..40299	99.655	870	0						
GCA_032710265.1_PDT001940403.1_genomic.fna	Salmonella_enterica	0.5221	251.569 KB	7	aroC_5,dnaN_110,hemD_35,hisD_122,purE_2,sucA_19,thrA_22	358	8:r:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_5	dnaN	100	100	dnaN_110	hemD	100	100	hemD_35	hisD	100	100	hisD_122	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_22	8	r	l,w	Salmonella enterica subspecies enterica (subspecies I)	Goldcoast or Brikama	The predicted serotypes share the same general formula: 8:r:l,w and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQEZH010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Goldcoast isolate AUSMDU00029155 SAMN37819686-rid19820023.denovo.06, whole genome shotgun sequence	165738..166175	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQEZH010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Goldcoast isolate AUSMDU00029155 SAMN37819686-rid19820023.guided.34, whole genome shotgun sequence	2432..2869	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.55	110 / 114	DAQEZH010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Goldcoast isolate AUSMDU00029155 SAMN37819686-rid19820023.denovo.36, whole genome shotgun sequence	1189..1298																																																						avrA	DAQEZH010000014.1	39583..40452	98.851	870	0						
GCA_032710285.1_PDT001940393.1_genomic.fna	Salmonella_enterica	0.5223	177.126 KB	9	aroC_139,dnaN_174,hemD_68,hisD_132,purE_133,sucA_9,thrA_168	578	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_139	dnaN	100	100	dnaN_174	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_133	sucA	100	100	sucA_9	thrA	100	100	thrA_168	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQEZL010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00029304 SAMN37819695-rid19820013.denovo.12, whole genome shotgun sequence	86327..86764	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQEZL010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00029304 SAMN37819695-rid19820013.guided.37, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEZL010000002.1	113571..114440	99.195	870	0						
GCA_032710305.1_PDT001940368.1_genomic.fna	Salmonella_enterica	0.521	179.702 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEZJ010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00044122 SAMN37819804-rid19817323.denovo.07, whole genome shotgun sequence	52302..52739	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEZJ010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00044122 SAMN37819804-rid19817323.guided.24, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	DAQEZJ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00044122 SAMN37819804-rid19817323.denovo.51, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQEZJ010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00044122 SAMN37819804-rid19817323.guided.52, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEZJ010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00044122 SAMN37819804-rid19817323.denovo.26, whole genome shotgun sequence	48111..48753	enterobacteriales	IncFII(S)	100	262 / 262	DAQEZJ010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00044122 SAMN37819804-rid19817323.denovo.26, whole genome shotgun sequence	3859..4120		enterobacteriales	IncX1	95.76	377 / 377	DAQEZJ010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00044122 SAMN37819804-rid19817323.denovo.48, whole genome shotgun sequence	4747..5123																																									avrA	DAQEZJ010000008.1	115345..116214	99.54	870	0						
GCA_032710325.1_PDT001940395.1_genomic.fna	Salmonella_enterica	0.5227	116.122 KB	15	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEZK010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00029282 SAMN37819693-rid19815943.denovo.04, whole genome shotgun sequence	15473..15910	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEZK010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00029282 SAMN37819693-rid19815943.guided.37, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEZK010000042.1	39430..40299	99.77	870	0						
GCA_032710365.1_PDT001940318.1_genomic.fna	Salmonella_enterica	0.5216	121.868 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEZQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047120 SAMN37820021-rid19814583.denovo.01, whole genome shotgun sequence	52515..52952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEZQ010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047120 SAMN37820021-rid19814583.guided.38, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEZQ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047120 SAMN37820021-rid19814583.denovo.17, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	DAQEZQ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047120 SAMN37820021-rid19814583.denovo.17, whole genome shotgun sequence	30407..30668																																																avrA	DAQEZQ010000004.1	108254..109123	99.885	870	0						
GCA_032710385.1_PDT001940358.1_genomic.fna	Salmonella_enterica	0.5218	93.877 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEZM010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045857 SAMN37819899-rid19817313.denovo.006, whole genome shotgun sequence	12523..12960	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEZM010000105.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045857 SAMN37819899-rid19817313.guided.036, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEZM010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045857 SAMN37819899-rid19817313.denovo.017, whole genome shotgun sequence	14689..15331	enterobacteriales	IncFII(S)	100	262 / 262	DAQEZM010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045857 SAMN37819899-rid19817313.denovo.017, whole genome shotgun sequence	30416..30677																																																avrA	DAQEZM010000003.1	107917..108786	99.885	870	0						
GCA_032710395.1_PDT001940356.1_genomic.fna	Salmonella_enterica	0.5222	65.175 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEZN010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045859 SAMN37819901-rid19817303.denovo.024, whole genome shotgun sequence	12476..12913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEZN010000138.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045859 SAMN37819901-rid19817303.guided.028, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEZN010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045859 SAMN37819901-rid19817303.denovo.031, whole genome shotgun sequence	44750..45392	enterobacteriales	IncFII(S)	100	262 / 262	DAQEZN010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045859 SAMN37819901-rid19817303.denovo.031, whole genome shotgun sequence	29404..29665																																																avrA	DAQEZN010000004.1	107913..108782	99.885	870	0						
GCA_032710425.1_PDT001940336.1_genomic.fna	Salmonella_enterica	0.5223	52.752 KB	30	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEZO010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045903 SAMN37819918-rid19817283.denovo.067, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEZO010000176.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045903 SAMN37819918-rid19817283.guided.060, whole genome shotgun sequence	14157..14594	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEZO010000110.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045903 SAMN37819918-rid19817283.denovo.113, whole genome shotgun sequence	9175..9817	enterobacteriales	IncFII(S)	100	262 / 262	DAQEZO010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045903 SAMN37819918-rid19817283.denovo.058, whole genome shotgun sequence	29403..29664																																																avrA	DAQEZO010000003.1	106306..107175	99.885	870	0						
GCA_032710445.1_PDT001940316.1_genomic.fna	Salmonella_enterica	0.5215	80.17 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEZP010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047161 SAMN37820023-rid19819993.denovo.017, whole genome shotgun sequence	38014..38451	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEZP010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047161 SAMN37820023-rid19819993.guided.037, whole genome shotgun sequence	16474..16911	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEZP010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047161 SAMN37820023-rid19819993.denovo.015, whole genome shotgun sequence	48415..49057	enterobacteriales	IncFII(S)	100	262 / 262	DAQEZP010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047161 SAMN37820023-rid19819993.denovo.015, whole genome shotgun sequence	64142..64403																																																avrA	DAQEZP010000008.1	61118..61987	99.885	870	0						
GCA_032710465.1_PDT001940310.1_genomic.fna	Salmonella_enterica	0.5214	149.685 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_1113,thrA_2	7910	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_1113	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEZR010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047434 SAMN37820028-rid19815913.denovo.02, whole genome shotgun sequence	206854..207291	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEZR010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047434 SAMN37820028-rid19815913.guided.13, whole genome shotgun sequence	14208..14645	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQEZR010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047434 SAMN37820028-rid19815913.denovo.19, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQEZR010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047434 SAMN37820028-rid19815913.denovo.19, whole genome shotgun sequence	60371..60632																																																avrA	DAQEZR010000007.1	105338..106207	99.885	870	0						
GCA_032710485.1_PDT001940279.1_genomic.fna	Salmonella_enterica	0.5204	267.955 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEZS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073196 SAMN37820143-rid19820793.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEZS010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073196 SAMN37820143-rid19820793.guided.18, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	DAQEZS010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073196 SAMN37820143-rid19820793.denovo.34, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQEZS010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073196 SAMN37820143-rid19820793.guided.33, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEZS010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073196 SAMN37820143-rid19820793.denovo.22, whole genome shotgun sequence	48111..48753	enterobacteriales	IncFII(S)	100	262 / 262	DAQEZS010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073196 SAMN37820143-rid19820793.denovo.22, whole genome shotgun sequence	3859..4120		enterobacteriales	IncX1	95.76	377 / 377	DAQEZS010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073196 SAMN37820143-rid19820793.denovo.25, whole genome shotgun sequence	4749..5125																																									avrA	DAQEZS010000005.1	140958..141827	99.54	870	0						
GCA_032710505.1_PDT001940303.1_genomic.fna	Salmonella_enterica	0.5208	220.483 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQEZT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047538 SAMN37820035-rid19813233.denovo.01, whole genome shotgun sequence	145229..145666	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQEZT010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047538 SAMN37820035-rid19813233.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	100	154 / 154	DAQEZT010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047538 SAMN37820035-rid19813233.denovo.45, whole genome shotgun sequence	3126..3279	enterobacteriales	IncFIB(S)	100	643 / 643	DAQEZT010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047538 SAMN37820035-rid19813233.denovo.18, whole genome shotgun sequence	48417..49059		enterobacteriales	IncFII(S)	100	262 / 262	DAQEZT010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047538 SAMN37820035-rid19813233.denovo.18, whole genome shotgun sequence	64144..64405		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQEZT010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047538 SAMN37820035-rid19813233.denovo.33, whole genome shotgun sequence	22488..22624																																		avrA	DAQEZT010000004.1	185697..186566	99.885	870	0						
GCA_032710525.1_PDT001940271.1_genomic.fna	Salmonella_enterica	0.5221	171.062 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQEZU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00024362 SAMN37819577-rid19818613.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQEZU010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00024362 SAMN37819577-rid19818613.guided.28, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQEZU010000005.1	39538..40407	99.77	870	0						
GCA_032710545.1_PDT001940265.1_genomic.fna	Salmonella_enterica	0.5213	151.597 KB	8	aroC_15,dnaN_126,hemD_101,hisD_88,purE_8,sucA_19,thrA_18	446	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_126	hemD	100	100	hemD_101	hisD	100	100	hisD_88	purE	100	100	purE_8	sucA	100	100	sucA_19	thrA	100	100	thrA_18	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQEZV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00024575 SAMN37819582-rid19809223.denovo.01, whole genome shotgun sequence	474349..474786	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQEZV010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00024575 SAMN37819582-rid19809223.guided.46, whole genome shotgun sequence	7749..8186	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQEZV010000021.1	39478..40347	99.77	870	0						
GCA_032710565.1_PDT001940251.1_genomic.fna	Salmonella_enterica	0.5212	264.392 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEZX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021294 SAMN37819510-rid19819983.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEZX010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021294 SAMN37819510-rid19819983.guided.22, whole genome shotgun sequence	27820..28257	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEZX010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021294 SAMN37819510-rid19819983.denovo.19, whole genome shotgun sequence	48285..48927	enterobacteriales	IncFII(S)	100	262 / 262	DAQEZX010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021294 SAMN37819510-rid19819983.denovo.19, whole genome shotgun sequence	4032..4293																																																avrA	DAQEZX010000005.1	174837..175706	99.54	870	0						
GCA_032710585.1_PDT001940261.1_genomic.fna	Salmonella_enterica	0.5212	166.031 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEZW010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029629 SAMN37819698-rid19817263.denovo.05, whole genome shotgun sequence	44035..44472	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEZW010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029629 SAMN37819698-rid19817263.guided.36, whole genome shotgun sequence	4730..5167	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQEZW010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029629 SAMN37819698-rid19817263.denovo.48, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEZW010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029629 SAMN37819698-rid19817263.denovo.28, whole genome shotgun sequence	36764..37406		enterobacteriales	IncFII(S)	100	262 / 262	DAQEZW010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00029629 SAMN37819698-rid19817263.denovo.28, whole genome shotgun sequence	51789..52050																																									avrA	DAQEZW010000006.1	140762..141631	99.54	870	0						
GCA_032710605.1_PDT001940243.1_genomic.fna	Salmonella_enterica	0.5209	317.521 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEZY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031699 SAMN37819714-rid19815893.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEZY010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031699 SAMN37819714-rid19815893.guided.17, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEZY010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031699 SAMN37819714-rid19815893.denovo.23, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	DAQEZY010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031699 SAMN37819714-rid19815893.denovo.34, whole genome shotgun sequence	3433..3694																																																avrA	DAQEZY010000008.1	176035..176904	99.54	870	0						
GCA_032710625.1_PDT001940241.1_genomic.fna	Salmonella_enterica	0.5212	171.211 KB	8	aroC_454,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	1925	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_454	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQEZZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031728 SAMN37819716-rid19819973.denovo.01, whole genome shotgun sequence	162456..162893	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQEZZ010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031728 SAMN37819716-rid19819973.guided.30, whole genome shotgun sequence	27171..27608	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQEZZ010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031728 SAMN37819716-rid19819973.denovo.24, whole genome shotgun sequence	48112..48754	enterobacteriales	IncFII(S)	100	262 / 262	DAQEZZ010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00031728 SAMN37819716-rid19819973.denovo.24, whole genome shotgun sequence	3859..4120																																																avrA	DAQEZZ010000006.1	115374..116243	99.54	870	0						
GCA_032710645.1_PDT001940239.1_genomic.fna	Salmonella_enterica	0.5204	99.403 KB	13	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFAA010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021902 SAMN37819529-rid19819963.denovo.23, whole genome shotgun sequence	20202..20639	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFAA010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021902 SAMN37819529-rid19819963.guided.46, whole genome shotgun sequence	9823..10260	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	DAQFAA010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021902 SAMN37819529-rid19819963.denovo.39, whole genome shotgun sequence	5285..6145	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQFAA010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021902 SAMN37819529-rid19819963.denovo.39, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQFAA010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021902 SAMN37819529-rid19819963.denovo.39, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQFAA010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021902 SAMN37819529-rid19819963.denovo.39, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQFAA010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021902 SAMN37819529-rid19819963.denovo.39, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	DAQFAA010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021902 SAMN37819529-rid19819963.guided.65, whole genome shotgun sequence	3945..4805	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQFAA010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021902 SAMN37819529-rid19819963.guided.65, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQFAA010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021902 SAMN37819529-rid19819963.guided.65, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQFAA010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021902 SAMN37819529-rid19819963.guided.65, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQFAA010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021902 SAMN37819529-rid19819963.guided.65, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFAA010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021902 SAMN37819529-rid19819963.denovo.32, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQFAA010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021902 SAMN37819529-rid19819963.denovo.60, whole genome shotgun sequence	3415..3676		enterobacteriales	IncX1	98.66	374 / 374	DAQFAA010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021902 SAMN37819529-rid19819963.denovo.39, whole genome shotgun sequence	11911..12284																																									avrA	DAQFAA010000011.1	115380..116249	99.54	870	0						
GCA_032710665.1_PDT001940214.1_genomic.fna	Salmonella_enterica	0.5211	262.72 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	1	Col(BS512)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFAB010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022252 SAMN37819540-rid19817253.denovo.02, whole genome shotgun sequence	151842..152279	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFAB010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022252 SAMN37819540-rid19817253.guided.18, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	Col(BS512)	100	233 / 233	DAQFAB010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022252 SAMN37819540-rid19817253.denovo.42, whole genome shotgun sequence	400..632																																																						avrA	DAQFAB010000008.1	115430..116299	99.54	870	0						
GCA_032710685.1_PDT001940204.1_genomic.fna	Salmonella_enterica	0.5219	142.486 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFAC010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045410 SAMN37819837-rid19817243.denovo.12, whole genome shotgun sequence	20884..21321	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFAC010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045410 SAMN37819837-rid19817243.guided.52, whole genome shotgun sequence	19311..19748	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFAC010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045410 SAMN37819837-rid19817243.denovo.64, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQFAC010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045410 SAMN37819837-rid19817243.denovo.18, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	DAQFAC010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045410 SAMN37819837-rid19817243.denovo.18, whole genome shotgun sequence	30407..30668																																									avrA	DAQFAC010000003.1	107905..108774	99.885	870	0						
GCA_032710695.1_PDT001940164.1_genomic.fna	Salmonella_enterica	0.5212	166.235 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFAD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048032 SAMN37820046-rid19819943.denovo.01, whole genome shotgun sequence	15521..15958	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFAD010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048032 SAMN37820046-rid19819943.guided.58, whole genome shotgun sequence	1981..2418	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFAD010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048032 SAMN37820046-rid19819943.denovo.16, whole genome shotgun sequence	48417..49059	enterobacteriales	IncFII(S)	100	262 / 262	DAQFAD010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048032 SAMN37820046-rid19819943.denovo.16, whole genome shotgun sequence	64144..64405		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFAD010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048032 SAMN37820046-rid19819943.denovo.35, whole genome shotgun sequence	22488..22624																																									avrA	DAQFAD010000007.1	123609..124478	99.885	870	0						
GCA_032710725.1_PDT001940129.1_genomic.fna	Salmonella_enterica	0.5209	230.228 KB	7	aroC_454,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	1925	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_454	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFAF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025076 SAMN37819590-rid19817223.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFAF010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025076 SAMN37819590-rid19817223.guided.18, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFAF010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025076 SAMN37819590-rid19817223.denovo.25, whole genome shotgun sequence	40531..41173	enterobacteriales	IncFII(S)	100	262 / 262	DAQFAF010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025076 SAMN37819590-rid19817223.denovo.36, whole genome shotgun sequence	3418..3679																																																avrA	DAQFAF010000007.1	140720..141589	99.54	870	0						
GCA_032710745.1_PDT001940154.1_genomic.fna	Salmonella_enterica	0.5219	145.234 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFAE010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048139 SAMN37820055-rid19820773.denovo.02, whole genome shotgun sequence	206854..207291	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFAE010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048139 SAMN37820055-rid19820773.guided.47, whole genome shotgun sequence	7152..7589	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFAE010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048139 SAMN37820055-rid19820773.denovo.21, whole genome shotgun sequence	48413..49055	enterobacteriales	IncFII(S)	100	262 / 262	DAQFAE010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048139 SAMN37820055-rid19820773.denovo.21, whole genome shotgun sequence	64140..64401																																																avrA	DAQFAE010000037.1	39625..40494	99.885	870	0						
GCA_032710765.1_PDT001940119.1_genomic.fna	Salmonella_enterica	0.5229	158.268 KB	8	aroC_41,dnaN_494,hemD_3,hisD_7,purE_5,sucA_6,thrA_10	3304	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_494	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_6	thrA	100	100	thrA_10	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFAG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025351 SAMN37819599-rid19817213.denovo.01, whole genome shotgun sequence	150090..150527	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFAG010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025351 SAMN37819599-rid19817213.guided.41, whole genome shotgun sequence	15566..16003	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQFAG010000003.1	146646..147515	99.425	870	0						
GCA_032710785.1_PDT001940117.1_genomic.fna	Salmonella_enterica	0.521	292.928 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFAH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025501 SAMN37819601-rid19818593.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFAH010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025501 SAMN37819601-rid19818593.guided.16, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFAH010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025501 SAMN37819601-rid19818593.denovo.30, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFAH010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025501 SAMN37819601-rid19818593.denovo.20, whole genome shotgun sequence	40532..41174		enterobacteriales	IncFII(S)	100	262 / 262	DAQFAH010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025501 SAMN37819601-rid19818593.denovo.20, whole genome shotgun sequence	55557..55818																																									avrA	DAQFAH010000008.1	140958..141827	99.54	870	0						
GCA_032710805.1_PDT001940109.1_genomic.fna	Salmonella_enterica	0.5211	438.751 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFAI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021290 SAMN37819509-rid19818583.denovo.01, whole genome shotgun sequence	291574..292011	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFAI010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021290 SAMN37819509-rid19818583.guided.22, whole genome shotgun sequence	12906..13343	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFAI010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021290 SAMN37819509-rid19818583.denovo.19, whole genome shotgun sequence	40529..41171	enterobacteriales	IncFII(S)	100	262 / 262	DAQFAI010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021290 SAMN37819509-rid19818583.denovo.26, whole genome shotgun sequence	3423..3684																																																avrA	DAQFAI010000007.1	174421..175290	99.54	870	0						
GCA_032710825.1_PDT001940107.1_genomic.fna	Salmonella_enterica	0.5208	406.244 KB	5	aroC_454,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	1925	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_454	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFAJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025910 SAMN37819608-rid19818573.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFAJ010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025910 SAMN37819608-rid19818573.guided.15, whole genome shotgun sequence	34195..34632	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFAJ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025910 SAMN37819608-rid19818573.denovo.18, whole genome shotgun sequence	40533..41175	enterobacteriales	IncFII(S)	100	262 / 262	DAQFAJ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025910 SAMN37819608-rid19818573.denovo.25, whole genome shotgun sequence	3420..3681																																																avrA	DAQFAJ010000002.1	553061..553930	99.54	870	0						
GCA_032710845.1_PDT001940097.1_genomic.fna	Salmonella_enterica	0.5206	170.635 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFAL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021569 SAMN37819519-rid19819933.denovo.01, whole genome shotgun sequence	62406..62843	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQFAL010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021569 SAMN37819519-rid19819933.denovo.43, whole genome shotgun sequence	5485..6315	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQFAL010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021569 SAMN37819519-rid19819933.denovo.43, whole genome shotgun sequence	6321..7124	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	DAQFAL010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021569 SAMN37819519-rid19819933.guided.20, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQFAL010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021569 SAMN37819519-rid19819933.guided.53, whole genome shotgun sequence	5239..6069	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQFAL010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021569 SAMN37819519-rid19819933.guided.53, whole genome shotgun sequence	4430..5233	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQFAL010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021569 SAMN37819519-rid19819933.denovo.43, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQFAL010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021569 SAMN37819519-rid19819933.guided.55, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	DAQFAL010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021569 SAMN37819519-rid19819933.denovo.43, whole genome shotgun sequence	7185..8000	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQFAL010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021569 SAMN37819519-rid19819933.guided.53, whole genome shotgun sequence	3554..4369	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFAL010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021569 SAMN37819519-rid19819933.denovo.35, whole genome shotgun sequence	32997..33639	enterobacteriales	IncFII(S)	100	262 / 262	DAQFAL010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021569 SAMN37819519-rid19819933.denovo.51, whole genome shotgun sequence	3425..3686		enterobacteriales	IncX1	95.76	377 / 377	DAQFAL010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021569 SAMN37819519-rid19819933.denovo.43, whole genome shotgun sequence	18289..18665																																									avrA	DAQFAL010000007.1	75383..76252	99.54	870	0						
GCA_032710865.1_PDT001940099.1_genomic.fna	Salmonella_enterica	0.5208	150.07 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFAK010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00026462 SAMN37819616-rid19818563.denovo.14, whole genome shotgun sequence	17288..17725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFAK010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00026462 SAMN37819616-rid19818563.guided.30, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFAK010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00026462 SAMN37819616-rid19818563.denovo.35, whole genome shotgun sequence	35217..35859	enterobacteriales	IncFII(S)	100	262 / 262	DAQFAK010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00026462 SAMN37819616-rid19818563.denovo.49, whole genome shotgun sequence	4078..4339		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQFAK010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00026462 SAMN37819616-rid19818563.denovo.26, whole genome shotgun sequence	19068..19209																																									avrA	DAQFAK010000005.1	140964..141833	99.54	870	0						
GCA_032710885.1_PDT001940081.1_genomic.fna	Salmonella_enterica	0.5207	152.104 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFAN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027666 SAMN37819632-rid19815883.denovo.01, whole genome shotgun sequence	382110..382547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFAN010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027666 SAMN37819632-rid19815883.guided.42, whole genome shotgun sequence	14161..14598	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFAN010000003.1	149541..150410	99.77	870	0						
GCA_032710905.1_PDT001940087.1_genomic.fna	Salmonella_enterica	0.5213	148.378 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFAM010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027479 SAMN37819627-rid19819923.denovo.02, whole genome shotgun sequence	313782..314219	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFAM010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027479 SAMN37819627-rid19819923.guided.27, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFAM010000003.1	124011..124880	99.77	870	0						
GCA_032710925.1_PDT001940074.1_genomic.fna	Salmonella_enterica	0.5224	98.989 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFAO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00034154 SAMN37819725-rid19812953.denovo.01, whole genome shotgun sequence	313782..314219	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFAO010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00034154 SAMN37819725-rid19812953.guided.61, whole genome shotgun sequence	1948..2385	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFAO010000006.1	60825..61694	99.77	870	0						
GCA_032710945.1_PDT001940067.1_genomic.fna	Salmonella_enterica	0.5215	96.985 KB	16	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		5	Col156,IncFIB(S),IncFII(S),IncFII(pCTU2),pESA2	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFAQ010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00035808 SAMN37819731-rid19820763.denovo.025, whole genome shotgun sequence	20244..20681	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFAQ010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00035808 SAMN37819731-rid19820763.guided.029, whole genome shotgun sequence	44256..44693	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	DAQFAQ010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00035808 SAMN37819731-rid19820763.denovo.079, whole genome shotgun sequence	3377..3528	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFAQ010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00035808 SAMN37819731-rid19820763.denovo.028, whole genome shotgun sequence	49121..49763		enterobacteriales	IncFII(S)	100	262 / 262	DAQFAQ010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00035808 SAMN37819731-rid19820763.denovo.028, whole genome shotgun sequence	4868..5129		enterobacteriales	IncFII(pCTU2)	97.23	577 / 577	DAQFAQ010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00035808 SAMN37819731-rid19820763.denovo.057, whole genome shotgun sequence	4742..5318		enterobacteriales	pESA2	98.4	750 / 750	DAQFAQ010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00035808 SAMN37819731-rid19820763.denovo.057, whole genome shotgun sequence	21137..21886																											avrA	DAQFAQ010000003.1	115387..116256	99.54	870	0						
GCA_032710965.1_PDT001940042.1_genomic.fna	Salmonella_enterica	0.5215	114.258 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFAP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045416 SAMN37819840-rid19817203.denovo.01, whole genome shotgun sequence	32131..32568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFAP010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045416 SAMN37819840-rid19817203.guided.28, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFAP010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045416 SAMN37819840-rid19817203.denovo.18, whole genome shotgun sequence	48416..49058	enterobacteriales	IncFII(S)	100	262 / 262	DAQFAP010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045416 SAMN37819840-rid19817203.denovo.18, whole genome shotgun sequence	64143..64404																																																avrA	DAQFAP010000009.1	61077..61946	99.885	870	0						
GCA_032710985.1_PDT001940022.1_genomic.fna	Salmonella_enterica	0.522	88.423 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFAS010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045573 SAMN37819858-rid19817193.denovo.024, whole genome shotgun sequence	15461..15898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFAS010000115.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045573 SAMN37819858-rid19817193.guided.060, whole genome shotgun sequence	22900..23337	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFAS010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045573 SAMN37819858-rid19817193.denovo.015, whole genome shotgun sequence	43737..44379	enterobacteriales	IncFII(S)	100	262 / 262	DAQFAS010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045573 SAMN37819858-rid19817193.denovo.015, whole genome shotgun sequence	59464..59725																																																avrA	DAQFAS010000010.1	39625..40494	99.885	870	0						
GCA_032711005.1_PDT001940032.1_genomic.fna	Salmonella_enterica	0.5215	93.888 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFAR010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045545 SAMN37819849-rid19818553.denovo.21, whole genome shotgun sequence	12525..12962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFAR010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045545 SAMN37819849-rid19818553.guided.36, whole genome shotgun sequence	16969..17406	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFAR010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045545 SAMN37819849-rid19818553.denovo.42, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	DAQFAR010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045545 SAMN37819849-rid19818553.denovo.42, whole genome shotgun sequence	9325..9586																																																avrA	DAQFAR010000006.1	95312..96181	99.885	870	0						
GCA_032711025.1_PDT001940012.1_genomic.fna	Salmonella_enterica	0.5212	221.436 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFAT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022281 SAMN37819544-rid19819913.denovo.01, whole genome shotgun sequence	192761..193198	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFAT010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022281 SAMN37819544-rid19819913.guided.26, whole genome shotgun sequence	33128..33565	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFAT010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022281 SAMN37819544-rid19819913.denovo.24, whole genome shotgun sequence	40533..41175	enterobacteriales	IncFII(S)	100	262 / 262	DAQFAT010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022281 SAMN37819544-rid19819913.denovo.34, whole genome shotgun sequence	3423..3684																																																avrA	DAQFAT010000008.1	115334..116203	99.54	870	0						
GCA_032711045.1_PDT001940006.1_genomic.fna	Salmonella_enterica	0.5217	82.603 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFAV010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046446 SAMN37819959-rid19810463.denovo.029, whole genome shotgun sequence	15476..15913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFAV010000116.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046446 SAMN37819959-rid19810463.guided.056, whole genome shotgun sequence	14421..14858	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFAV010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046446 SAMN37819959-rid19810463.denovo.014, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	DAQFAV010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046446 SAMN37819959-rid19810463.denovo.014, whole genome shotgun sequence	64139..64400		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFAV010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046446 SAMN37819959-rid19810463.denovo.043, whole genome shotgun sequence	22488..22624																																									avrA	DAQFAV010000040.1	39625..40494	99.885	870	0						
GCA_032711065.1_PDT001940002.1_genomic.fna	Salmonella_enterica	0.5225	77.553 KB	22	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFAU010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046488 SAMN37819963-rid19820753.denovo.007, whole genome shotgun sequence	81975..82412	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFAU010000136.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046488 SAMN37819963-rid19820753.guided.035, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQFAU010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046488 SAMN37819963-rid19820753.denovo.099, whole genome shotgun sequence	3709..3839	enterobacteriales	IncFIB(S)	100	643 / 643	DAQFAU010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046488 SAMN37819963-rid19820753.denovo.014, whole genome shotgun sequence	43089..43731		enterobacteriales	IncFII(S)	100	262 / 262	DAQFAU010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046488 SAMN37819963-rid19820753.denovo.014, whole genome shotgun sequence	58816..59077																																									avrA	DAQFAU010000004.1	106245..107114	99.885	870	0						
GCA_032711085.1_PDT001939984.1_genomic.fna	Salmonella_enterica	0.5217	178.989 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFAW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046724 SAMN37819979-rid19815853.denovo.01, whole genome shotgun sequence	207028..207465	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFAW010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046724 SAMN37819979-rid19815853.guided.26, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFAW010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046724 SAMN37819979-rid19815853.denovo.54, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQFAW010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046724 SAMN37819979-rid19815853.denovo.13, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	DAQFAW010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046724 SAMN37819979-rid19815853.denovo.13, whole genome shotgun sequence	30407..30668																																									avrA	DAQFAW010000004.1	121675..122544	99.885	870	0						
GCA_032711105.1_PDT001939975.1_genomic.fna	Salmonella_enterica	0.5212	81.612 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	Col156,Col156,IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFAX010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048576 SAMN37820074-rid19817173.denovo.006, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFAX010000125.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048576 SAMN37820074-rid19817173.guided.083, whole genome shotgun sequence	153..590	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	DAQFAX010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048576 SAMN37820074-rid19817173.denovo.090, whole genome shotgun sequence	967..1118	enterobacteriales	Col156	94.16	154 / 154	DAQFAX010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048576 SAMN37820074-rid19817173.denovo.091, whole genome shotgun sequence	483..636		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQFAX010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048576 SAMN37820074-rid19817173.denovo.034, whole genome shotgun sequence	15839..15980																																									avrA	DAQFAX010000014.1	61077..61946	99.885	870	0						
GCA_032711125.1_PDT001939977.1_genomic.fna	Salmonella_enterica	0.5223	45.061 KB	28	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFAY010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048568 SAMN37820072-rid19817183.denovo.043, whole genome shotgun sequence	14103..14540	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFAY010000193.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048568 SAMN37820072-rid19817183.guided.099, whole genome shotgun sequence	7287..7724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFAY010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048568 SAMN37820072-rid19817183.denovo.106, whole genome shotgun sequence	9172..9814	enterobacteriales	IncFII(S)	100	262 / 262	DAQFAY010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048568 SAMN37820072-rid19817183.denovo.033, whole genome shotgun sequence	29398..29659																																																avrA	DAQFAY010000029.1	43664..44533	99.885	870	0						
GCA_032711145.1_PDT001939965.1_genomic.fna	Salmonella_enterica	0.5221	50.89 KB	34	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFAZ010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048736 SAMN37820083-rid19817163.denovo.070, whole genome shotgun sequence	12481..12918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFAZ010000193.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048736 SAMN37820083-rid19817163.guided.142, whole genome shotgun sequence	1167..1604	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFAZ010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048736 SAMN37820083-rid19817163.denovo.008, whole genome shotgun sequence	43066..43708	enterobacteriales	IncFII(S)	100	262 / 262	DAQFAZ010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048736 SAMN37820083-rid19817163.denovo.008, whole genome shotgun sequence	58793..59054		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFAZ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048736 SAMN37820083-rid19817163.denovo.048, whole genome shotgun sequence	22488..22624																																									avrA	DAQFAZ010000022.1	61077..61946	99.885	870	0						
GCA_032711165.1_PDT001939945.1_genomic.fna	Salmonella_enterica	0.5212	230.803 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFBB010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028103 SAMN37819639-rid19818533.denovo.05, whole genome shotgun sequence	62408..62845	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFBB010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028103 SAMN37819639-rid19818533.guided.27, whole genome shotgun sequence	24930..25367	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFBB010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028103 SAMN37819639-rid19818533.denovo.37, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFBB010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028103 SAMN37819639-rid19818533.denovo.22, whole genome shotgun sequence	40533..41175		enterobacteriales	IncFII(S)	100	262 / 262	DAQFBB010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028103 SAMN37819639-rid19818533.denovo.22, whole genome shotgun sequence	55558..55819																																									avrA	DAQFBB010000001.1	140771..141640	99.54	870	0						
GCA_032711185.1_PDT001939955.1_genomic.fna	Salmonella_enterica	0.5214	83.726 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFBA010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048971 SAMN37820092-rid19818543.denovo.002, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFBA010000121.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048971 SAMN37820092-rid19818543.guided.015, whole genome shotgun sequence	15397..15834	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFBA010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048971 SAMN37820092-rid19818543.denovo.102, whole genome shotgun sequence	965..1118	enterobacteriales	ColRNAI	90.08	131 / 130	DAQFBA010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048971 SAMN37820092-rid19818543.denovo.098, whole genome shotgun sequence	3981..4111		enterobacteriales	IncFIB(S)	100	643 / 643	DAQFBA010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048971 SAMN37820092-rid19818543.denovo.016, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	DAQFBA010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048971 SAMN37820092-rid19818543.denovo.016, whole genome shotgun sequence	30407..30668																																		avrA	DAQFBA010000012.1	107493..108362	99.885	870	0						
GCA_032711205.1_PDT001939937.1_genomic.fna	Salmonella_enterica	0.5211	177.758 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFBD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028350 SAMN37819647-rid19815843.denovo.01, whole genome shotgun sequence	151869..152306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFBD010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028350 SAMN37819647-rid19815843.guided.28, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFBD010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028350 SAMN37819647-rid19815843.denovo.46, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFBD010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028350 SAMN37819647-rid19815843.denovo.27, whole genome shotgun sequence	40532..41174		enterobacteriales	IncFII(S)	100	262 / 262	DAQFBD010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028350 SAMN37819647-rid19815843.denovo.27, whole genome shotgun sequence	55557..55818																																									avrA	DAQFBD010000005.1	140958..141827	99.54	870	0						
GCA_032711225.1_PDT001939935.1_genomic.fna	Salmonella_enterica	0.5205	171.312 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFBC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028355 SAMN37819648-rid19819903.denovo.01, whole genome shotgun sequence	477832..478269	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFBC010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028355 SAMN37819648-rid19819903.guided.33, whole genome shotgun sequence	20883..21320	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFBC010000002.1	123980..124849	99.77	870	0						
GCA_032711255.1_PDT001939909.1_genomic.fna	Salmonella_enterica	0.5206	284.078 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFBF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00039986 SAMN37819758-rid19811023.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQFBF010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00039986 SAMN37819758-rid19811023.denovo.26, whole genome shotgun sequence	573..1403	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQFBF010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00039986 SAMN37819758-rid19811023.denovo.26, whole genome shotgun sequence	1409..2212	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	DAQFBF010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00039986 SAMN37819758-rid19811023.guided.16, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQFBF010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00039986 SAMN37819758-rid19811023.guided.31, whole genome shotgun sequence	3795..4625	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQFBF010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00039986 SAMN37819758-rid19811023.guided.31, whole genome shotgun sequence	2986..3789	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQFBF010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00039986 SAMN37819758-rid19811023.denovo.33, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQFBF010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00039986 SAMN37819758-rid19811023.guided.32, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	DAQFBF010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00039986 SAMN37819758-rid19811023.denovo.26, whole genome shotgun sequence	2273..3088	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQFBF010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00039986 SAMN37819758-rid19811023.guided.31, whole genome shotgun sequence	2110..2925	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFBF010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00039986 SAMN37819758-rid19811023.denovo.21, whole genome shotgun sequence	32997..33639	enterobacteriales	IncFII(S)	100	262 / 262	DAQFBF010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00039986 SAMN37819758-rid19811023.denovo.30, whole genome shotgun sequence	4168..4429		enterobacteriales	IncX1	95.76	377 / 377	DAQFBF010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00039986 SAMN37819758-rid19811023.denovo.26, whole genome shotgun sequence	13377..13753																																									avrA	DAQFBF010000008.1	140781..141650	99.54	870	0						
GCA_032711285.1_PDT001939915.1_genomic.fna	Salmonella_enterica	0.5215	93.054 KB	16	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFBE010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028462 SAMN37819667-rid19820733.denovo.006, whole genome shotgun sequence	25574..26011	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQFBE010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028462 SAMN37819667-rid19820733.guided.048, whole genome shotgun sequence	14175..14612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFBE010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028462 SAMN37819667-rid19820733.guided.049, whole genome shotgun sequence	14175..14612	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																							enterobacteriales	Col156	94.81	154 / 154	DAQFBE010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028462 SAMN37819667-rid19820733.denovo.079, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFBE010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028462 SAMN37819667-rid19820733.denovo.028, whole genome shotgun sequence	40532..41174		enterobacteriales	IncFII(S)	100	262 / 262	DAQFBE010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028462 SAMN37819667-rid19820733.denovo.028, whole genome shotgun sequence	55557..55818																																									avrA	DAQFBE010000003.1	115305..116174	99.54	870	0						
GCA_032711305.1_PDT001939906.1_genomic.fna	Salmonella_enterica	0.523	113.966 KB	14	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_12	434	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_12	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQFBG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00040147 SAMN37819761-rid19820723.denovo.01, whole genome shotgun sequence	223369..223806	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQFBG010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00040147 SAMN37819761-rid19820723.guided.39, whole genome shotgun sequence	31042..31479	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFBG010000009.1	140168..141036	99.31	870	0						
GCA_032711325.1_PDT001939890.1_genomic.fna	Salmonella_enterica	0.5229	82.671 KB	20	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFBH010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00040987 SAMN37819776-rid19817153.denovo.026, whole genome shotgun sequence	12511..12948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFBH010000118.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00040987 SAMN37819776-rid19817153.guided.047, whole genome shotgun sequence	19517..19954	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	96.89	193 / 193	DAQFBH010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00040987 SAMN37819776-rid19817153.denovo.098, whole genome shotgun sequence	1653..1845																																																						avrA	DAQFBH010000023.1	43303..44172	99.77	870	0						
GCA_032711345.1_PDT001939878.1_genomic.fna	Salmonella_enterica	0.521	134.24 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFBI010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045713 SAMN37819873-rid19818513.denovo.03, whole genome shotgun sequence	206854..207291	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFBI010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045713 SAMN37819873-rid19818513.guided.17, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFBI010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045713 SAMN37819873-rid19818513.denovo.24, whole genome shotgun sequence	36059..36701	enterobacteriales	IncFII(S)	100	262 / 262	DAQFBI010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045713 SAMN37819873-rid19818513.denovo.24, whole genome shotgun sequence	51786..52047																																																avrA	DAQFBI010000005.1	123442..124311	99.885	870	0						
GCA_032711365.1_PDT001939872.1_genomic.fna	Salmonella_enterica	0.5209	118.49 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFBJ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045720 SAMN37819878-rid19814463.denovo.02, whole genome shotgun sequence	52515..52952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFBJ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045720 SAMN37819878-rid19814463.guided.09, whole genome shotgun sequence	31125..31562	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFBJ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045720 SAMN37819878-rid19814463.denovo.18, whole genome shotgun sequence	48409..49051	enterobacteriales	IncFII(S)	100	262 / 262	DAQFBJ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045720 SAMN37819878-rid19814463.denovo.18, whole genome shotgun sequence	64136..64397		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFBJ010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045720 SAMN37819878-rid19814463.denovo.39, whole genome shotgun sequence	22488..22624																																									avrA	DAQFBJ010000009.1	39625..40494	99.885	870	0						
GCA_032711375.1_PDT001939868.1_genomic.fna	Salmonella_enterica	0.5214	90.26 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFBK010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045725 SAMN37819882-rid19818503.denovo.002, whole genome shotgun sequence	134071..134508	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFBK010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045725 SAMN37819882-rid19818503.guided.037, whole genome shotgun sequence	34213..34650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFBK010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045725 SAMN37819882-rid19818503.denovo.015, whole genome shotgun sequence	48416..49058	enterobacteriales	IncFII(S)	100	262 / 262	DAQFBK010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045725 SAMN37819882-rid19818503.denovo.015, whole genome shotgun sequence	64143..64404		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFBK010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045725 SAMN37819882-rid19818503.denovo.041, whole genome shotgun sequence	22488..22624																																									avrA	DAQFBK010000008.1	61116..61985	99.885	870	0						
GCA_032711405.1_PDT001939870.1_genomic.fna	Salmonella_enterica	0.521	149.634 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFBL010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045722 SAMN37819880-rid19817143.denovo.02, whole genome shotgun sequence	206855..207292	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFBL010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045722 SAMN37819880-rid19817143.guided.20, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFBL010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045722 SAMN37819880-rid19817143.denovo.16, whole genome shotgun sequence	48405..49047	enterobacteriales	IncFII(S)	100	262 / 262	DAQFBL010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045722 SAMN37819880-rid19817143.denovo.16, whole genome shotgun sequence	64132..64393		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQFBL010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045722 SAMN37819880-rid19817143.denovo.34, whole genome shotgun sequence	22333..22474																																									avrA	DAQFBL010000007.1	108311..109180	99.885	870	0						
GCA_032711425.1_PDT001939867.1_genomic.fna	Salmonella_enterica	0.521	123.995 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFBM010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045726 SAMN37819883-rid19812693.denovo.05, whole genome shotgun sequence	52534..52971	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFBM010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045726 SAMN37819883-rid19812693.guided.25, whole genome shotgun sequence	37917..38354	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFBM010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045726 SAMN37819883-rid19812693.denovo.74, whole genome shotgun sequence	965..1118	enterobacteriales	ColRNAI	90.08	131 / 130	DAQFBM010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045726 SAMN37819883-rid19812693.denovo.72, whole genome shotgun sequence	3981..4111		enterobacteriales	IncFIB(S)	100	643 / 643	DAQFBM010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045726 SAMN37819883-rid19812693.denovo.21, whole genome shotgun sequence	36050..36692		enterobacteriales	IncFII(S)	100	262 / 262	DAQFBM010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045726 SAMN37819883-rid19812693.denovo.21, whole genome shotgun sequence	51777..52038																																		avrA	DAQFBM010000002.1	121667..122536	99.885	870	0						
GCA_032711445.1_PDT001939860.1_genomic.fna	Salmonella_enterica	0.5223	58.507 KB	28	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFBN010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045812 SAMN37819889-rid19819893.denovo.060, whole genome shotgun sequence	14138..14575	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFBN010000153.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045812 SAMN37819889-rid19819893.guided.030, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFBN010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045812 SAMN37819889-rid19819893.denovo.036, whole genome shotgun sequence	48449..49091	enterobacteriales	IncFII(S)	100	262 / 262	DAQFBN010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045812 SAMN37819889-rid19819893.denovo.045, whole genome shotgun sequence	29405..29666																																																avrA	DAQFBN010000004.1	106351..107220	99.885	870	0						
GCA_032711465.1_PDT001939823.1_genomic.fna	Salmonella_enterica	0.5217	90.742 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFBP010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046957 SAMN37820008-rid19817133.denovo.020, whole genome shotgun sequence	13092..13529	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFBP010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046957 SAMN37820008-rid19817133.guided.043, whole genome shotgun sequence	14239..14676	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFBP010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046957 SAMN37820008-rid19817133.denovo.023, whole genome shotgun sequence	48425..49067	enterobacteriales	IncFII(S)	100	262 / 262	DAQFBP010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046957 SAMN37820008-rid19817133.denovo.023, whole genome shotgun sequence	64152..64413		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQFBP010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046957 SAMN37820008-rid19817133.denovo.041, whole genome shotgun sequence	18676..18817																																									avrA	DAQFBP010000009.1	107905..108774	99.885	870	0						
GCA_032711485.1_PDT001939807.1_genomic.fna	Salmonella_enterica	0.5221	181.517 KB	7	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQFBQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00049185 SAMN37820109-rid19809073.denovo.01, whole genome shotgun sequence	38306..38743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQFBQ010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00049185 SAMN37820109-rid19809073.guided.25, whole genome shotgun sequence	15477..15914	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFBQ010000003.1	150674..151543	98.966	870	0						
GCA_032711505.1_PDT001939858.1_genomic.fna	Salmonella_enterica	0.5225	57.802 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFBO010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045842 SAMN37819891-rid19819883.denovo.066, whole genome shotgun sequence	12525..12962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFBO010000163.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045842 SAMN37819891-rid19819883.guided.062, whole genome shotgun sequence	15585..16022	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFBO010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045842 SAMN37819891-rid19819883.denovo.109, whole genome shotgun sequence	9272..9914	enterobacteriales	IncFII(S)	100	262 / 262	DAQFBO010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045842 SAMN37819891-rid19819883.denovo.041, whole genome shotgun sequence	29413..29674																																																avrA	DAQFBO010000006.1	105257..106126	99.885	870	0						
GCA_032711525.1_PDT001939783.1_genomic.fna	Salmonella_enterica	0.5212	136.476 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFBS010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028579 SAMN37819670-rid19819873.denovo.03, whole genome shotgun sequence	17806..18243	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFBS010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028579 SAMN37819670-rid19819873.guided.31, whole genome shotgun sequence	24989..25426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFBS010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028579 SAMN37819670-rid19819873.denovo.62, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFBS010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028579 SAMN37819670-rid19819873.denovo.30, whole genome shotgun sequence	40527..41169		enterobacteriales	IncFII(S)	100	262 / 262	DAQFBS010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028579 SAMN37819670-rid19819873.denovo.30, whole genome shotgun sequence	55552..55813																																									avrA	DAQFBS010000013.1	43585..44454	99.54	870	0						
GCA_032711535.1_PDT001939793.1_genomic.fna	Salmonella_enterica	0.5215	131.141 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFBR010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049520 SAMN37820122-rid19818483.denovo.09, whole genome shotgun sequence	52520..52957	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFBR010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049520 SAMN37820122-rid19818483.guided.20, whole genome shotgun sequence	23381..23818	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFBR010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049520 SAMN37820122-rid19818483.denovo.76, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQFBR010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049520 SAMN37820122-rid19818483.denovo.15, whole genome shotgun sequence	48435..49077		enterobacteriales	IncFII(S)	100	262 / 262	DAQFBR010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049520 SAMN37820122-rid19818483.denovo.15, whole genome shotgun sequence	64162..64423																																									avrA	DAQFBR010000006.1	108339..109208	99.885	870	0						
GCA_032711585.1_PDT001927647.1_genomic.fna	Salmonella_enterica	0.5212	405.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVXU010000001.1 Salmonella enterica strain PNUSAS390912 SAMN37806010-rid19709343.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVXU010000031.1 Salmonella enterica strain PNUSAS390912 SAMN37806010-rid19709343.guided.15, whole genome shotgun sequence	8009..8446	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVXU010000021.1 Salmonella enterica strain PNUSAS390912 SAMN37806010-rid19709343.denovo.22, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNVXU010000023.1 Salmonella enterica strain PNUSAS390912 SAMN37806010-rid19709343.denovo.26, whole genome shotgun sequence	3405..3666																																																avrA	ABNVXU010000002.1	553636..554505	99.54	870	0						
GCA_032711605.1_PDT001927646.1_genomic.fna	Salmonella_enterica	0.5216	108.468 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVXV010000001.1 Salmonella enterica strain PNUSAS390919 SAMN37806015-rid19705873.denovo.01, whole genome shotgun sequence	151115..151552	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVXV010000071.1 Salmonella enterica strain PNUSAS390919 SAMN37806015-rid19705873.guided.61, whole genome shotgun sequence	3986..4423	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVXV010000052.1 Salmonella enterica strain PNUSAS390919 SAMN37806015-rid19705873.denovo.52, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNVXV010000035.1 Salmonella enterica strain PNUSAS390919 SAMN37806015-rid19705873.denovo.35, whole genome shotgun sequence	5032..5293																																																avrA	ABNVXV010000007.1	43665..44534	99.54	870	0						
GCA_032711625.1_PDT001927644.1_genomic.fna	Salmonella_enterica	0.517	213.801 KB	8	aroC_488,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2058	48:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_488	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:z4,z32:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNVXX010000032.1 Salmonella enterica strain PNUSAS390754 SAMN37806003-rid19705863.denovo.34, whole genome shotgun sequence	6584..7021	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNVXX010000057.1 Salmonella enterica strain PNUSAS390754 SAMN37806003-rid19705863.guided.39, whole genome shotgun sequence	4359..4796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032711685.1_PDT001927641.1_genomic.fna	Salmonella_enterica	0.521	271.281 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVXZ010000002.1 Salmonella enterica strain PNUSAS390753 SAMN37806002-rid19705853.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVXZ010000048.1 Salmonella enterica strain PNUSAS390753 SAMN37806002-rid19705853.guided.24, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNVXZ010000033.1 Salmonella enterica strain PNUSAS390753 SAMN37806002-rid19705853.denovo.35, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNVXZ010000027.1 Salmonella enterica strain PNUSAS390753 SAMN37806002-rid19705853.denovo.29, whole genome shotgun sequence	29372..29633																																																avrA	ABNVXZ010000004.1	174355..175223	100	869	0						
GCA_032711705.1_PDT001927640.1_genomic.fna	Salmonella_enterica	0.5225	219.673 KB	6	aroC_2,dnaN_4,hemD_40,hisD_43,purE_481,sucA_2,thrA_425	2125	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_4	hemD	100	100	hemD_40	hisD	100	100	hisD_43	purE	100	100	purE_481	sucA	100	100	sucA_2	thrA	100	100	thrA_425	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNVYA010000001.1 Salmonella enterica strain PNUSAS390921 SAMN37806016-rid19706813.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNVYA010000043.1 Salmonella enterica strain PNUSAS390921 SAMN37806016-rid19706813.guided.32, whole genome shotgun sequence	24942..25379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVYA010000009.1	141712..142581	99.77	870	0						
GCA_032711725.1_PDT001927639.1_genomic.fna	Salmonella_enterica	0.5208	148.931 KB	9	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVYB010000001.1 Salmonella enterica strain PNUSAS390915 SAMN37806008-rid19705843.denovo.01, whole genome shotgun sequence	165416..165853	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVYB010000053.1 Salmonella enterica strain PNUSAS390915 SAMN37806008-rid19705843.denovo.56, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVYB010000053.1 Salmonella enterica strain PNUSAS390915 SAMN37806008-rid19705843.denovo.56, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNVYB010000072.1 Salmonella enterica strain PNUSAS390915 SAMN37806008-rid19705843.guided.57, whole genome shotgun sequence	3455..4291	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVYB010000072.1 Salmonella enterica strain PNUSAS390915 SAMN37806008-rid19705843.guided.57, whole genome shotgun sequence	2652..3455	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNVYB010000073.1 Salmonella enterica strain PNUSAS390915 SAMN37806008-rid19705843.guided.60, whole genome shotgun sequence	878..1315	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNVYB010000058.1 Salmonella enterica strain PNUSAS390915 SAMN37806008-rid19705843.denovo.64, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNVYB010000074.1 Salmonella enterica strain PNUSAS390915 SAMN37806008-rid19705843.guided.63, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNVYB010000053.1 Salmonella enterica strain PNUSAS390915 SAMN37806008-rid19705843.denovo.56, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNVYB010000072.1 Salmonella enterica strain PNUSAS390915 SAMN37806008-rid19705843.guided.57, whole genome shotgun sequence	1776..2591	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNVYB010000047.1 Salmonella enterica strain PNUSAS390915 SAMN37806008-rid19705843.denovo.48, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNVYB010000071.1 Salmonella enterica strain PNUSAS390915 SAMN37806008-rid19705843.guided.53, whole genome shotgun sequence	3735..4940	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNVYB010000008.1	93724..94593	99.885	870	0						
GCA_032711745.1_PDT001927638.1_genomic.fna	Salmonella_enterica	0.5207	337.257 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNVYC010000001.1 Salmonella enterica strain PNUSAS390755 SAMN37806004-rid19710353.denovo.01, whole genome shotgun sequence	494517..494954	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNVYC010000032.1 Salmonella enterica strain PNUSAS390755 SAMN37806004-rid19710353.guided.18, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVYC010000002.1	144854..145723	99.31	870	0						
GCA_032711765.1_PDT001927637.1_genomic.fna	Salmonella_enterica	0.5216	211.694 KB	8	aroC_15,dnaN_126,hemD_101,hisD_88,purE_8,sucA_19,thrA_18	446	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_126	hemD	100	100	hemD_101	hisD	100	100	hisD_88	purE	100	100	purE_8	sucA	100	100	sucA_19	thrA	100	100	thrA_18	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNVYD010000001.1 Salmonella enterica strain PNUSAS390913 SAMN37806006-rid19709333.denovo.01, whole genome shotgun sequence	377284..377721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNVYD010000043.1 Salmonella enterica strain PNUSAS390913 SAMN37806006-rid19709333.guided.33, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVYD010000014.1	95048..95917	99.77	870	0						
GCA_032711785.1_PDT001927635.1_genomic.fna	Salmonella_enterica	0.5204	228.436 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVYE010000001.1 Salmonella enterica strain PNUSAS390918 SAMN37806018-rid19708493.denovo.01, whole genome shotgun sequence	192515..192952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVYE010000050.1 Salmonella enterica strain PNUSAS390918 SAMN37806018-rid19708493.guided.30, whole genome shotgun sequence	15875..16312	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVYE010000030.1 Salmonella enterica strain PNUSAS390918 SAMN37806018-rid19708493.denovo.33, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNVYE010000035.1 Salmonella enterica strain PNUSAS390918 SAMN37806018-rid19708493.denovo.38, whole genome shotgun sequence	3418..3679		enterobacteriales	IncX1	98.93	374 / 374	ABNVYE010000025.1 Salmonella enterica strain PNUSAS390918 SAMN37806018-rid19708493.denovo.25, whole genome shotgun sequence	32011..32384																																									avrA	ABNVYE010000002.1	175109..175978	99.54	870	0						
GCA_032711805.1_PDT001927633.1_genomic.fna	Salmonella_enterica	0.521	208.467 KB	9	aroC_301,dnaN_272,hemD_48,hisD_16,purE_40,sucA_13,thrA_3	864	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_301	dnaN	100	100	dnaN_272	hemD	100	100	hemD_48	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_3	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNVYF010000008.1 Salmonella enterica strain PNUSAS390914 SAMN37806009-rid19711373.denovo.08, whole genome shotgun sequence	170031..170468	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNVYF010000069.1 Salmonella enterica strain PNUSAS390914 SAMN37806009-rid19711373.guided.34, whole genome shotgun sequence	16268..16705	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.63	534 / 534	ABNVYF010000025.1 Salmonella enterica strain PNUSAS390914 SAMN37806009-rid19711373.denovo.25, whole genome shotgun sequence	53514..54047																																																																	
GCA_032711825.1_PDT001927631.1_genomic.fna	Salmonella_enterica	0.5213	412.183 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVYG010000001.1 Salmonella enterica strain PNUSAS390752 SAMN37806001-rid19711363.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVYG010000027.1 Salmonella enterica strain PNUSAS390752 SAMN37806001-rid19711363.guided.22, whole genome shotgun sequence	4038..4475	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVYG010000019.1 Salmonella enterica strain PNUSAS390752 SAMN37806001-rid19711363.denovo.21, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNVYG010000016.1 Salmonella enterica strain PNUSAS390752 SAMN37806001-rid19711363.denovo.17, whole genome shotgun sequence	3877..4138																																																avrA	ABNVYG010000002.1	553431..554300	99.54	870	0						
GCA_032711865.1_PDT001927625.1_genomic.fna	Salmonella_enterica	0.5193	288.744 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	4	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVYI010000001.1 Salmonella enterica strain PNUSAS390835 SAMN37805991-rid19707513.denovo.01, whole genome shotgun sequence	486024..486461	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVYI010000060.1 Salmonella enterica strain PNUSAS390835 SAMN37805991-rid19707513.guided.44, whole genome shotgun sequence	2587..3024	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNVYI010000008.1 Salmonella enterica strain PNUSAS390835 SAMN37805991-rid19707513.denovo.08, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNVYI010000057.1 Salmonella enterica strain PNUSAS390835 SAMN37805991-rid19707513.guided.39, whole genome shotgun sequence	9371..9793	Fosfomycin	LAPJ01000014	sul2	100	816/816	ABNVYI010000036.1 Salmonella enterica strain PNUSAS390835 SAMN37805991-rid19707513.denovo.38, whole genome shotgun sequence	2652..3467	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNVYI010000056.1 Salmonella enterica strain PNUSAS390835 SAMN37805991-rid19707513.guided.37, whole genome shotgun sequence	12911..13726	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNVYI010000037.1 Salmonella enterica strain PNUSAS390835 SAMN37805991-rid19707513.denovo.41, whole genome shotgun sequence	1203..2408	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNVYI010000058.1 Salmonella enterica strain PNUSAS390835 SAMN37805991-rid19707513.guided.40, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVYI010000020.1	64444..65313	99.195	870	0						
GCA_032711885.1_PDT001927624.1_genomic.fna	Salmonella_enterica	0.5212	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVYK010000001.1 Salmonella enterica strain PNUSAS390852 SAMN37805983-rid19705813.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVYK010000025.1 Salmonella enterica strain PNUSAS390852 SAMN37805983-rid19705813.guided.20, whole genome shotgun sequence	1409..1846	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNVYK010000011.1 Salmonella enterica strain PNUSAS390852 SAMN37805983-rid19705813.denovo.11, whole genome shotgun sequence	40455..41097	enterobacteriales	IncFII(S)	100	262 / 262	ABNVYK010000015.1 Salmonella enterica strain PNUSAS390852 SAMN37805983-rid19705813.denovo.17, whole genome shotgun sequence	3402..3663																																																avrA	ABNVYK010000002.1	553499..554368	99.54	870	0						
GCA_032711895.1_PDT001927630.1_genomic.fna	Salmonella_enterica	0.5211	467.482 KB	4	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVYH010000001.1 Salmonella enterica strain PNUSAS390916 SAMN37806007-rid19706803.denovo.01, whole genome shotgun sequence	648004..648441	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVYH010000029.1 Salmonella enterica strain PNUSAS390916 SAMN37806007-rid19706803.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVYH010000003.1	192325..193194	99.425	870	0						
GCA_032711925.1_PDT001927623.1_genomic.fna	Salmonella_enterica	0.5214	233.108 KB	8	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNVYL010000009.1 Salmonella enterica strain PNUSAS390920 SAMN37805974-rid19711353.denovo.09, whole genome shotgun sequence	144834..145271	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNVYL010000038.1 Salmonella enterica strain PNUSAS390920 SAMN37805974-rid19711353.guided.30, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNVYL010000032.1 Salmonella enterica strain PNUSAS390920 SAMN37805974-rid19711353.denovo.35, whole genome shotgun sequence	838..968																																																						avrA	ABNVYL010000010.1	140114..140983	99.425	870	0						
GCA_032711945.1_PDT001927622.1_genomic.fna	Salmonella_enterica	0.5211	489.889 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVYM010000001.1 Salmonella enterica strain PNUSAS390833 SAMN37805981-rid19708473.denovo.01, whole genome shotgun sequence	733874..734311	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVYM010000025.1 Salmonella enterica strain PNUSAS390833 SAMN37805981-rid19708473.guided.17, whole genome shotgun sequence	3925..4362	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVYM010000011.1 Salmonella enterica strain PNUSAS390833 SAMN37805981-rid19708473.denovo.12, whole genome shotgun sequence	40544..41186	enterobacteriales	IncFII(S)	100	262 / 262	ABNVYM010000014.1 Salmonella enterica strain PNUSAS390833 SAMN37805981-rid19708473.denovo.16, whole genome shotgun sequence	3368..3629																																																avrA	ABNVYM010000002.1	585418..586287	99.54	870	0						
GCA_032711985.1_PDT001927620.1_genomic.fna	Salmonella_enterica	0.5223	761.796 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVYO010000001.1 Salmonella enterica strain PNUSAS390836 SAMN37805993-rid19707503.denovo.01, whole genome shotgun sequence	473685..474122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNVYO010000021.1 Salmonella enterica strain PNUSAS390836 SAMN37805993-rid19707503.guided.16, whole genome shotgun sequence	6665..7102	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVYO010000005.1	151150..152019	99.77	870	0						
GCA_032712005.1_PDT001927616.1_genomic.fna	Salmonella_enterica	0.5214	671.163 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNVYS010000001.1 Salmonella enterica strain PNUSAS390834 SAMN37805990-rid19710303.denovo.01, whole genome shotgun sequence	398130..398567	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNVYS010000022.1 Salmonella enterica strain PNUSAS390834 SAMN37805990-rid19710303.guided.17, whole genome shotgun sequence	9398..9835	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVYS010000003.1	496602..497470	99.425	870	0						
GCA_032712025.1_PDT001927618.1_genomic.fna	Salmonella_enterica	0.5203	444.533 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVYQ010000008.1 Salmonella enterica strain PNUSAS390855 SAMN37805987-rid19710323.denovo.08, whole genome shotgun sequence	88728..89165	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVYQ010000027.1 Salmonella enterica strain PNUSAS390855 SAMN37805987-rid19710323.guided.21, whole genome shotgun sequence	6523..6960	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVYQ010000009.1	232053..232921	99.195	870	0						
GCA_032712045.1_PDT001927619.1_genomic.fna	Salmonella_enterica	0.5212	282.835 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,blaTEM-1B,blaTEM-1B,sul2,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVYP010000001.1 Salmonella enterica strain PNUSAS390849 SAMN37805992-rid19706783.denovo.01, whole genome shotgun sequence	673536..673973	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVYP010000031.1 Salmonella enterica strain PNUSAS390849 SAMN37805992-rid19706783.denovo.34, whole genome shotgun sequence	6..842	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVYP010000031.1 Salmonella enterica strain PNUSAS390849 SAMN37805992-rid19706783.denovo.34, whole genome shotgun sequence	842..1645	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNVYP010000041.1 Salmonella enterica strain PNUSAS390849 SAMN37805992-rid19706783.guided.32, whole genome shotgun sequence	810..1247	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	804/804	ABNVYP010000042.1 Salmonella enterica strain PNUSAS390849 SAMN37805992-rid19706783.guided.35, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNVYP010000043.1 Salmonella enterica strain PNUSAS390849 SAMN37805992-rid19706783.guided.36, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNVYP010000046.1 Salmonella enterica strain PNUSAS390849 SAMN37805992-rid19706783.guided.40, whole genome shotgun sequence	393..1229	Streptomycin	M28829	blaTEM-1B	100	861/861	ABNVYP010000032.1 Salmonella enterica strain PNUSAS390849 SAMN37805992-rid19706783.denovo.39, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNVYP010000045.1 Salmonella enterica strain PNUSAS390849 SAMN37805992-rid19706783.guided.38, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNVYP010000031.1 Salmonella enterica strain PNUSAS390849 SAMN37805992-rid19706783.denovo.34, whole genome shotgun sequence	1706..2521	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNVYP010000042.1 Salmonella enterica strain PNUSAS390849 SAMN37805992-rid19706783.guided.35, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNVYP010000043.1 Salmonella enterica strain PNUSAS390849 SAMN37805992-rid19706783.guided.36, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNVYP010000029.1 Salmonella enterica strain PNUSAS390849 SAMN37805992-rid19706783.denovo.31, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNVYP010000040.1 Salmonella enterica strain PNUSAS390849 SAMN37805992-rid19706783.guided.30, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																					avrA	ABNVYP010000002.1	540740..541609	99.885	870	0						
GCA_032712065.1_PDT001927614.1_genomic.fna	Salmonella_enterica	0.5201	444.533 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNVYU010000008.1 Salmonella enterica strain PNUSAS390856 SAMN37805988-rid19705803.denovo.08, whole genome shotgun sequence	89582..90019	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNVYU010000025.1 Salmonella enterica strain PNUSAS390856 SAMN37805988-rid19705803.guided.19, whole genome shotgun sequence	5232..5669	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVYU010000009.1	232053..232921	99.195	870	0						
GCA_032712085.1_PDT001927617.1_genomic.fna	Salmonella_enterica	0.5211	402.198 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNVYR010000001.1 Salmonella enterica strain PNUSAS390853 SAMN37805985-rid19710313.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNVYR010000025.1 Salmonella enterica strain PNUSAS390853 SAMN37805985-rid19710313.guided.18, whole genome shotgun sequence	737..1174	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNVYR010000016.1 Salmonella enterica strain PNUSAS390853 SAMN37805985-rid19710313.denovo.20, whole genome shotgun sequence	239..369																																																						avrA	ABNVYR010000003.1	140114..140983	99.425	870	0						
GCA_032712105.1_PDT001927615.1_genomic.fna	Salmonella_enterica	0.5214	279.776 KB	6	aroC_10,dnaN_19,hemD_363,hisD_9,purE_5,sucA_9,thrA_2	2379	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_363	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVYT010000001.1 Salmonella enterica strain PNUSAS390851 SAMN37805982-rid19708463.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVYT010000031.1 Salmonella enterica strain PNUSAS390851 SAMN37805982-rid19708463.denovo.35, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVYT010000031.1 Salmonella enterica strain PNUSAS390851 SAMN37805982-rid19708463.denovo.35, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNVYT010000049.1 Salmonella enterica strain PNUSAS390851 SAMN37805982-rid19708463.guided.34, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVYT010000049.1 Salmonella enterica strain PNUSAS390851 SAMN37805982-rid19708463.guided.34, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNVYT010000051.1 Salmonella enterica strain PNUSAS390851 SAMN37805982-rid19708463.guided.44, whole genome shotgun sequence	777..1214	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNVYT010000038.1 Salmonella enterica strain PNUSAS390851 SAMN37805982-rid19708463.denovo.43, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNVYT010000050.1 Salmonella enterica strain PNUSAS390851 SAMN37805982-rid19708463.guided.42, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNVYT010000031.1 Salmonella enterica strain PNUSAS390851 SAMN37805982-rid19708463.denovo.35, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNVYT010000049.1 Salmonella enterica strain PNUSAS390851 SAMN37805982-rid19708463.guided.34, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNVYT010000028.1 Salmonella enterica strain PNUSAS390851 SAMN37805982-rid19708463.denovo.30, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNVYT010000048.1 Salmonella enterica strain PNUSAS390851 SAMN37805982-rid19708463.guided.31, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNVYT010000002.1	540338..541207	99.885	870	0						
GCA_032712145.1_PDT001927612.1_genomic.fna	Salmonella_enterica	0.5198	489.647 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVYW010000001.1 Salmonella enterica strain PNUSAS390857 SAMN37805989-rid19709313.denovo.01, whole genome shotgun sequence	736663..737100	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVYW010000025.1 Salmonella enterica strain PNUSAS390857 SAMN37805989-rid19709313.guided.17, whole genome shotgun sequence	902..1339	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVYW010000011.1 Salmonella enterica strain PNUSAS390857 SAMN37805989-rid19709313.denovo.11, whole genome shotgun sequence	40509..41151	enterobacteriales	IncFII(S)	100	262 / 262	ABNVYW010000015.1 Salmonella enterica strain PNUSAS390857 SAMN37805989-rid19709313.denovo.18, whole genome shotgun sequence	3359..3620		enterobacteriales	IncX1	98.67	377 / 377	ABNVYW010000012.1 Salmonella enterica strain PNUSAS390857 SAMN37805989-rid19709313.denovo.12, whole genome shotgun sequence	6390..6766																																									avrA	ABNVYW010000002.1	553108..553977	99.54	870	0						
GCA_032712165.1_PDT001927611.1_genomic.fna	Salmonella_enterica	0.5214	240.827 KB	7	aroC_18,dnaN_437,hemD_10,hisD_121,purE_193,sucA_9,thrA_319	2023	47:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col(pHAD28)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_437	hemD	100	100	hemD_10	hisD	100	100	hisD_121	purE	100	100	purE_193	sucA	100	100	sucA_9	thrA	100	100	thrA_319	47	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I 47:z4,z23:-	This predicted serotype is not in the Kauffman-White scheme. This antigenic profile has been associated with serotype 'IIIa 47:z4,z23:-' in the Kauffman-White scheme. The existence of the same antigenic formula in multiple species or subspecies is well documented in the Kauffman-White Scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNVYX010000001.1 Salmonella enterica strain PNUSAS390854 SAMN37805986-rid19711323.denovo.01, whole genome shotgun sequence	489183..489620	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNVYX010000039.1 Salmonella enterica strain PNUSAS390854 SAMN37805986-rid19711323.guided.31, whole genome shotgun sequence	1244..1681	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNVYX010000029.1 Salmonella enterica strain PNUSAS390854 SAMN37805986-rid19711323.denovo.32, whole genome shotgun sequence	546..674																																																						avrA	ABNVYX010000003.1	149519..150388	99.195	870	0						
GCA_032712215.1_PDT001927609.1_genomic.fna	Salmonella_enterica	0.5215	273.841 KB	6	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVYY010000003.1 Salmonella enterica strain PNUSAS390922 SAMN37805973-rid19706773.denovo.03, whole genome shotgun sequence	375257..375694	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNVYY010000035.1 Salmonella enterica strain PNUSAS390922 SAMN37805973-rid19706773.guided.23, whole genome shotgun sequence	43886..44323	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVYY010000005.1	90028..90897	99.425	870	0						
GCA_032712255.1_PDT001927608.1_genomic.fna	Salmonella_enterica	0.5231	496.527 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVZA010000001.1 Salmonella enterica strain PNUSAS390865 SAMN37805984-rid19711313.denovo.01, whole genome shotgun sequence	790256..790693	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVZA010000030.1 Salmonella enterica strain PNUSAS390865 SAMN37805984-rid19711313.guided.19, whole genome shotgun sequence	3351..3788	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVZA010000002.1	94005..94874	98.966	870	0						
GCA_032712335.1_PDT001927603.1_genomic.fna	Salmonella_enterica	0.5202	489.746 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVZF010000001.1 Salmonella enterica strain PNUSAS390837 SAMN37805950-rid19711303.denovo.01, whole genome shotgun sequence	815084..815521	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVZF010000026.1 Salmonella enterica strain PNUSAS390837 SAMN37805950-rid19711303.guided.18, whole genome shotgun sequence	1305..1742	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	ABNVZF010000013.1 Salmonella enterica strain PNUSAS390837 SAMN37805950-rid19711303.denovo.14, whole genome shotgun sequence	5285..6145	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNVZF010000013.1 Salmonella enterica strain PNUSAS390837 SAMN37805950-rid19711303.denovo.14, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNVZF010000013.1 Salmonella enterica strain PNUSAS390837 SAMN37805950-rid19711303.denovo.14, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNVZF010000013.1 Salmonella enterica strain PNUSAS390837 SAMN37805950-rid19711303.denovo.14, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNVZF010000013.1 Salmonella enterica strain PNUSAS390837 SAMN37805950-rid19711303.denovo.14, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	ABNVZF010000027.1 Salmonella enterica strain PNUSAS390837 SAMN37805950-rid19711303.guided.22, whole genome shotgun sequence	2086..2946	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNVZF010000027.1 Salmonella enterica strain PNUSAS390837 SAMN37805950-rid19711303.guided.22, whole genome shotgun sequence	2086..2946	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNVZF010000027.1 Salmonella enterica strain PNUSAS390837 SAMN37805950-rid19711303.guided.22, whole genome shotgun sequence	2086..2946	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNVZF010000027.1 Salmonella enterica strain PNUSAS390837 SAMN37805950-rid19711303.guided.22, whole genome shotgun sequence	2086..2946	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNVZF010000027.1 Salmonella enterica strain PNUSAS390837 SAMN37805950-rid19711303.guided.22, whole genome shotgun sequence	2086..2946	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVZF010000012.1 Salmonella enterica strain PNUSAS390837 SAMN37805950-rid19711303.denovo.13, whole genome shotgun sequence	40533..41175	enterobacteriales	IncFII(S)	100	262 / 262	ABNVZF010000016.1 Salmonella enterica strain PNUSAS390837 SAMN37805950-rid19711303.denovo.19, whole genome shotgun sequence	3393..3654		enterobacteriales	IncX1	98.66	374 / 374	ABNVZF010000013.1 Salmonella enterica strain PNUSAS390837 SAMN37805950-rid19711303.denovo.14, whole genome shotgun sequence	11911..12284																																									avrA	ABNVZF010000002.1	553389..554258	99.54	870	0						
GCA_032712355.1_PDT001927604.1_genomic.fna	Salmonella_enterica	0.5218	436.701 KB	4	aroC_2,dnaN_59,hemD_23,hisD_64,purE_38,sucA_61,thrA_122	377	8:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		3	Col(pHAD28),Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_59	hemD	100	100	hemD_23	hisD	100	100	hisD_64	purE	100	100	purE_38	sucA	100	100	sucA_61	thrA	100	100	thrA_122	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNVZE010000001.1 Salmonella enterica strain PNUSAS390842 SAMN37805959-rid19705793.denovo.01, whole genome shotgun sequence	144730..145167	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNVZE010000027.1 Salmonella enterica strain PNUSAS390842 SAMN37805959-rid19705793.guided.20, whole genome shotgun sequence	3522..3959	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNVZE010000018.1 Salmonella enterica strain PNUSAS390842 SAMN37805959-rid19705793.denovo.22, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNVZE010000028.1 Salmonella enterica strain PNUSAS390842 SAMN37805959-rid19705793.guided.21, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNVZE010000018.1 Salmonella enterica strain PNUSAS390842 SAMN37805959-rid19705793.denovo.22, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNVZE010000028.1 Salmonella enterica strain PNUSAS390842 SAMN37805959-rid19705793.guided.21, whole genome shotgun sequence	2416..2546		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVZE010000013.1 Salmonella enterica strain PNUSAS390842 SAMN37805959-rid19705793.denovo.13, whole genome shotgun sequence	43397..44039		enterobacteriales	IncFII(S)	97.71	262 / 262	ABNVZE010000013.1 Salmonella enterica strain PNUSAS390842 SAMN37805959-rid19705793.denovo.13, whole genome shotgun sequence	58778..59037																																		avrA	ABNVZE010000002.1	511836..512705	99.425	870	0						
GCA_032712375.1_PDT001927602.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVZG010000001.1 Salmonella enterica strain PNUSAS390862 SAMN37805966-rid19709303.denovo.01, whole genome shotgun sequence	774351..774788	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVZG010000020.1 Salmonella enterica strain PNUSAS390862 SAMN37805966-rid19709303.guided.14, whole genome shotgun sequence	21665..22102	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVZG010000011.1 Salmonella enterica strain PNUSAS390862 SAMN37805966-rid19709303.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNVZG010000011.1 Salmonella enterica strain PNUSAS390862 SAMN37805966-rid19709303.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABNVZG010000002.1	553636..554505	99.54	870	0						
GCA_032712395.1_PDT001927600.1_genomic.fna	Salmonella_enterica	0.5216	185.107 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVZI010000001.1 Salmonella enterica strain PNUSAS390776 SAMN37805968-rid19707483.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVZI010000044.1 Salmonella enterica strain PNUSAS390776 SAMN37805968-rid19707483.guided.39, whole genome shotgun sequence	2620..3057	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVZI010000003.1	219259..220127	99.77	870	0						
GCA_032712415.1_PDT001927601.1_genomic.fna	Salmonella_enterica	0.5211	266.637 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_1173	7168	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_1173	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVZH010000001.1 Salmonella enterica strain PNUSAS390775 SAMN37805962-rid19710273.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVZH010000048.1 Salmonella enterica strain PNUSAS390775 SAMN37805962-rid19710273.guided.36, whole genome shotgun sequence	3270..3707	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVZH010000004.1	175533..176401	99.77	870	0						
GCA_032712435.1_PDT001927599.1_genomic.fna	Salmonella_enterica	0.5218	761.787 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVZJ010000001.1 Salmonella enterica strain PNUSAS390860 SAMN37805961-rid19705783.denovo.01, whole genome shotgun sequence	491552..491989	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNVZJ010000021.1 Salmonella enterica strain PNUSAS390860 SAMN37805961-rid19705783.guided.17, whole genome shotgun sequence	2862..3299	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNVZJ010000006.1	93863..94732	99.77	870	0						
GCA_032712455.1_PDT001927598.1_genomic.fna	Salmonella_enterica	0.5217	728.55 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNVZK010000001.1 Salmonella enterica strain PNUSAS390841 SAMN37805955-rid19707473.denovo.01, whole genome shotgun sequence	687395..687832	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNVZK010000028.1 Salmonella enterica strain PNUSAS390841 SAMN37805955-rid19707473.guided.14, whole genome shotgun sequence	4405..4842	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNVZK010000015.1 Salmonella enterica strain PNUSAS390841 SAMN37805955-rid19707473.denovo.18, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNVZK010000032.1 Salmonella enterica strain PNUSAS390841 SAMN37805955-rid19707473.guided.26, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNVZK010000015.1 Salmonella enterica strain PNUSAS390841 SAMN37805955-rid19707473.denovo.18, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNVZK010000030.1 Salmonella enterica strain PNUSAS390841 SAMN37805955-rid19707473.guided.24, whole genome shotgun sequence	1340..2553	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNVZK010000015.1 Salmonella enterica strain PNUSAS390841 SAMN37805955-rid19707473.denovo.18, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNVZK010000029.1 Salmonella enterica strain PNUSAS390841 SAMN37805955-rid19707473.guided.22, whole genome shotgun sequence	79..918	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNVZK010000015.1 Salmonella enterica strain PNUSAS390841 SAMN37805955-rid19707473.denovo.18, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNVZK010000031.1 Salmonella enterica strain PNUSAS390841 SAMN37805955-rid19707473.guided.25, whole genome shotgun sequence	862..2136	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNVZK010000015.1 Salmonella enterica strain PNUSAS390841 SAMN37805955-rid19707473.denovo.18, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNVZK010000033.1 Salmonella enterica strain PNUSAS390841 SAMN37805955-rid19707473.guided.27, whole genome shotgun sequence	337..810	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNVZK010000014.1 Salmonella enterica strain PNUSAS390841 SAMN37805955-rid19707473.denovo.17, whole genome shotgun sequence	4434..4684																																																						avrA	ABNVZK010000003.1	553473..554342	99.77	870	0						
GCA_032712475.1_PDT001927597.1_genomic.fna	Salmonella_enterica	0.5221	521.161 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNVZL010000001.1 Salmonella enterica strain PNUSAS390772 SAMN37805963-rid19708443.denovo.01, whole genome shotgun sequence	684114..684551	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNVZL010000026.1 Salmonella enterica strain PNUSAS390772 SAMN37805963-rid19708443.guided.23, whole genome shotgun sequence	2242..2679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNVZL010000021.1 Salmonella enterica strain PNUSAS390772 SAMN37805963-rid19708443.denovo.24, whole genome shotgun sequence	805..997																																																						avrA	ABNVZL010000002.1	563780..564649	99.77	870	0						
GCA_032712495.1_PDT001927596.1_genomic.fna	Salmonella_enterica	0.5227	669.583 KB	2	aroC_18,dnaN_5,hemD_43,hisD_14,purE_5,sucA_18,thrA_1	Unknown	38:l,v:e,n,x	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_5	hemD	100	100	hemD_43	hisD	100	100	hisD_14	purE	100	100	purE_5	sucA	100	100	sucA_18	thrA	100	100	thrA_1	38	l,v	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Roan		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNVZM010000001.1 Salmonella enterica strain PNUSAS390863 SAMN37805970-rid19711293.denovo.01, whole genome shotgun sequence	1365682..1366119	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNVZM010000021.1 Salmonella enterica strain PNUSAS390863 SAMN37805970-rid19711293.guided.17, whole genome shotgun sequence	3235..3672	Amikacin, Tobramycin	NC_003197	fosA7	99.76	423/423	ABNVZM010000005.1 Salmonella enterica strain PNUSAS390863 SAMN37805970-rid19711293.denovo.05, whole genome shotgun sequence	159185..159607	Fosfomycin	LAPJ01000014	fosA7	99.76	423/423	ABNVZM010000020.1 Salmonella enterica strain PNUSAS390863 SAMN37805970-rid19711293.guided.15, whole genome shotgun sequence	2800..3222	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVZM010000002.1	517654..518523	99.54	870	0						
GCA_032712515.1_PDT001927595.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVZN010000001.1 Salmonella enterica strain PNUSAS390864 SAMN37805960-rid19706763.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVZN010000024.1 Salmonella enterica strain PNUSAS390864 SAMN37805960-rid19706763.guided.18, whole genome shotgun sequence	5447..5884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVZN010000012.1 Salmonella enterica strain PNUSAS390864 SAMN37805960-rid19706763.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNVZN010000016.1 Salmonella enterica strain PNUSAS390864 SAMN37805960-rid19706763.denovo.17, whole genome shotgun sequence	3391..3652																																																avrA	ABNVZN010000002.1	553636..554505	99.54	870	0						
GCA_032712535.1_PDT001927594.1_genomic.fna	Salmonella_enterica	0.5166	242.244 KB	6	aroC_705,dnaN_225,hemD_166,hisD_885,purE_713,sucA_251,thrA_730	3778	40:-:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_705	dnaN	100	100	dnaN_225	hemD	100	100	hemD_166	hisD	100	100	hisD_885	purE	100	100	purE_713	sucA	100	100	sucA_251	thrA	100	100	thrA_730	40	-	e,n,x	Salmonella enterica subspecies salamae (subspecies II)	II 40:-:e,n,x	fliC was not detected. This is an atypical result that should be further investigated. Most Salmonella strains have fliC, encoding the Phase 1 H antigen, even if it is not expressed.	O	H1_fliC	H2_fljB	aac(6')-Iaa	95.43	438/438	ABNVZP010000001.1 Salmonella enterica strain PNUSAS390850 SAMN37805956-rid19705773.denovo.01, whole genome shotgun sequence	349546..349983	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.43	438/438	ABNVZP010000060.1 Salmonella enterica strain PNUSAS390850 SAMN37805956-rid19705773.guided.41, whole genome shotgun sequence	807..1244	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVZP010000004.1	47912..48775	95.833	864	0						
GCA_032712555.1_PDT001927593.1_genomic.fna	Salmonella_enterica	0.5225	683.5 KB	3	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNVZO010000001.1 Salmonella enterica strain PNUSAS390774 SAMN37805967-rid19706753.denovo.01, whole genome shotgun sequence	874216..874653	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNVZO010000024.1 Salmonella enterica strain PNUSAS390774 SAMN37805967-rid19706753.guided.20, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVZO010000003.1	131921..132790	98.966	870	0						
GCA_032712575.1_PDT001927591.1_genomic.fna	Salmonella_enterica	0.5213	490.157 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVZR010000001.1 Salmonella enterica strain PNUSAS390858 SAMN37805957-rid19710263.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVZR010000023.1 Salmonella enterica strain PNUSAS390858 SAMN37805957-rid19710263.guided.17, whole genome shotgun sequence	4403..4840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVZR010000012.1 Salmonella enterica strain PNUSAS390858 SAMN37805957-rid19710263.denovo.12, whole genome shotgun sequence	40529..41171	enterobacteriales	IncFII(S)	100	262 / 262	ABNVZR010000015.1 Salmonella enterica strain PNUSAS390858 SAMN37805957-rid19710263.denovo.18, whole genome shotgun sequence	3387..3648																																																avrA	ABNVZR010000002.1	553678..554547	99.54	870	0						
GCA_032712595.1_PDT001927592.1_genomic.fna	Salmonella_enterica	0.5215	191.426 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVZQ010000001.1 Salmonella enterica strain PNUSAS390777 SAMN37805964-rid19709293.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVZQ010000061.1 Salmonella enterica strain PNUSAS390777 SAMN37805964-rid19709293.guided.43, whole genome shotgun sequence	5619..6056	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABNVZQ010000043.1 Salmonella enterica strain PNUSAS390777 SAMN37805964-rid19709293.denovo.46, whole genome shotgun sequence	3981..4111																																																						avrA	ABNVZQ010000009.1	94133..95001	99.77	870	0						
GCA_032712615.1_PDT001927588.1_genomic.fna	Salmonella_enterica	0.521	490.139 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVZT010000001.1 Salmonella enterica strain PNUSAS390838 SAMN37805951-rid19707453.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVZT010000026.1 Salmonella enterica strain PNUSAS390838 SAMN37805951-rid19707453.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVZT010000013.1 Salmonella enterica strain PNUSAS390838 SAMN37805951-rid19707453.denovo.15, whole genome shotgun sequence	32147..32789	enterobacteriales	IncFII(S)	100	262 / 262	ABNVZT010000016.1 Salmonella enterica strain PNUSAS390838 SAMN37805951-rid19707453.denovo.19, whole genome shotgun sequence	3232..3493																																																avrA	ABNVZT010000002.1	585418..586287	99.54	870	0						
GCA_032712635.1_PDT001927590.1_genomic.fna	Salmonella_enterica	0.5214	269.495 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA17,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA17,blaTEM-1B,blaTEM-1B,lnu(F),lnu(F),floR,floR,qnrS1,qnrS1,sul2,sul2,tet(B),tet(M),tet(B),tet(M)	0		2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVZS010000003.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.denovo.03, whole genome shotgun sequence	52070..52507	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVZS010000038.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.denovo.42, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVZS010000038.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.denovo.42, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aadA17	98.86	792/792	ABNVZS010000044.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.denovo.52, whole genome shotgun sequence	944..1735	Spectinomycin, Streptomycin	FJ460181	aph(6)-Id	100	837/837	ABNVZS010000062.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.guided.41, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVZS010000062.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.guided.41, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNVZS010000064.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.guided.47, whole genome shotgun sequence	2332..2769	Amikacin, Tobramycin	NC_003197	aadA17	98.86	792/792	ABNVZS010000066.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.guided.50, whole genome shotgun sequence	985..1776	Spectinomycin, Streptomycin	FJ460181	blaTEM-1B	100	861/861	ABNVZS010000049.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.denovo.58, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNVZS010000068.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.guided.59, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	lnu(F)	99.88	822/822	ABNVZS010000044.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.denovo.52, whole genome shotgun sequence	1867..2688	Lincomycin	EU118119	lnu(F)	99.88	822/822	ABNVZS010000066.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.guided.50, whole genome shotgun sequence	1908..2729	Lincomycin	EU118119	floR	98.11	1214/1215	ABNVZS010000039.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.denovo.43, whole genome shotgun sequence	1100..2313	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNVZS010000063.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.guided.46, whole genome shotgun sequence	2016..3229	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNVZS010000048.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.denovo.57, whole genome shotgun sequence	737..1393	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNVZS010000067.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.guided.56, whole genome shotgun sequence	590..1246	Ciprofloxacin	AB187515	sul2	100	816/816	ABNVZS010000038.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.denovo.42, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNVZS010000062.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.guided.41, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNVZS010000034.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.denovo.37, whole genome shotgun sequence	63..1268	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNVZS010000037.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.denovo.40, whole genome shotgun sequence	845..2764	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNVZS010000061.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.guided.36, whole genome shotgun sequence	4114..5319	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNVZS010000065.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.guided.48, whole genome shotgun sequence	885..2804	Doxycycline, Tetracycline, Minocycline	X04388																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNVZS010000035.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.denovo.38, whole genome shotgun sequence	2057..2738	enterobacteriales	IncFIC(FII)	94	500 / 499	ABNVZS010000022.1 Salmonella enterica strain PNUSAS390848 SAMN37805952-rid19707463.denovo.22, whole genome shotgun sequence	55736..56232																																																avrA	ABNVZS010000001.1	540740..541609	99.885	870	0						
GCA_032712655.1_PDT001927587.1_genomic.fna	Salmonella_enterica	0.5216	254.5 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVZU010000001.1 Salmonella enterica strain PNUSAS390773 SAMN37805969-rid19708433.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVZU010000043.1 Salmonella enterica strain PNUSAS390773 SAMN37805969-rid19708433.guided.31, whole genome shotgun sequence	11933..12370	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	90.79	152 / 154	ABNVZU010000033.1 Salmonella enterica strain PNUSAS390773 SAMN37805969-rid19708433.denovo.36, whole genome shotgun sequence	3270..3421																																																						avrA	ABNVZU010000006.1	185942..186810	99.77	870	0						
GCA_032712675.1_PDT001927586.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNVZV010000001.1 Salmonella enterica strain PNUSAS390859 SAMN37805958-rid19711283.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNVZV010000025.1 Salmonella enterica strain PNUSAS390859 SAMN37805958-rid19711283.guided.21, whole genome shotgun sequence	1260..1697	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNVZV010000012.1 Salmonella enterica strain PNUSAS390859 SAMN37805958-rid19711283.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNVZV010000015.1 Salmonella enterica strain PNUSAS390859 SAMN37805958-rid19711283.denovo.17, whole genome shotgun sequence	3402..3663																																																avrA	ABNVZV010000002.1	553636..554505	99.54	870	0						
GCA_032712695.1_PDT001927584.1_genomic.fna	Salmonella_enterica	0.521	407.638 KB	5	aroC_111,dnaN_109,hemD_17,hisD_149,purE_41,sucA_13,thrA_23	451	28:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCRY)	aroC	100	100	aroC_111	dnaN	100	100	dnaN_109	hemD	100	100	hemD_17	hisD	100	100	hisD_149	purE	100	100	purE_41	sucA	100	100	sucA_13	thrA	100	100	thrA_23	28	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Pomona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNVZX010000005.1 Salmonella enterica strain PNUSAS390840 SAMN37805954-rid19705763.denovo.05, whole genome shotgun sequence	270318..270755	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNVZX010000057.1 Salmonella enterica strain PNUSAS390840 SAMN37805954-rid19705763.guided.45, whole genome shotgun sequence	82..519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	93.93	593 / 593	ABNVZX010000022.1 Salmonella enterica strain PNUSAS390840 SAMN37805954-rid19705763.denovo.23, whole genome shotgun sequence	10699..11291																																																						avrA	ABNVZX010000001.1	140399..141268	99.54	870	0						
GCA_032712735.1_PDT001927585.1_genomic.fna	Salmonella_enterica	0.5204	470.22 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNVZW010000002.1 Salmonella enterica strain PNUSAS390839 SAMN37805953-rid19706743.denovo.02, whole genome shotgun sequence	416526..416963	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.72	353/438	ABNVZW010000023.1 Salmonella enterica strain PNUSAS390839 SAMN37805953-rid19706743.guided.20, whole genome shotgun sequence	1..353	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVZW010000001.1	559223..560092	99.425	870	0						
GCA_032712755.1_PDT001927583.1_genomic.fna	Salmonella_enterica	0.5214	207.445 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNVZY010000006.1 Salmonella enterica strain PNUSAS390847 SAMN37805949-rid19706733.denovo.06, whole genome shotgun sequence	145271..145708	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNVZY010000048.1 Salmonella enterica strain PNUSAS390847 SAMN37805949-rid19706733.guided.35, whole genome shotgun sequence	1815..2252	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABNVZY010000034.1 Salmonella enterica strain PNUSAS390847 SAMN37805949-rid19706733.denovo.37, whole genome shotgun sequence	483..636																																																						avrA	ABNVZY010000012.1	94133..95001	99.77	870	0						
GCA_032713345.1_PDT001940375.1_genomic.fna	Salmonella_enterica	0.5205	142.319 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFCW010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022135 SAMN37819537-rid19815933.denovo.02, whole genome shotgun sequence	17212..17649	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFCW010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022135 SAMN37819537-rid19815933.guided.50, whole genome shotgun sequence	12318..12755	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	DAQFCW010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022135 SAMN37819537-rid19815933.denovo.36, whole genome shotgun sequence	5285..6145	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQFCW010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022135 SAMN37819537-rid19815933.denovo.36, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQFCW010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022135 SAMN37819537-rid19815933.denovo.36, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQFCW010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022135 SAMN37819537-rid19815933.denovo.36, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQFCW010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022135 SAMN37819537-rid19815933.denovo.36, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	DAQFCW010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022135 SAMN37819537-rid19815933.guided.63, whole genome shotgun sequence	3945..4805	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQFCW010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022135 SAMN37819537-rid19815933.guided.63, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQFCW010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022135 SAMN37819537-rid19815933.guided.63, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQFCW010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022135 SAMN37819537-rid19815933.guided.63, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQFCW010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022135 SAMN37819537-rid19815933.guided.63, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFCW010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022135 SAMN37819537-rid19815933.denovo.32, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	DAQFCW010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022135 SAMN37819537-rid19815933.denovo.60, whole genome shotgun sequence	3417..3678		enterobacteriales	IncX1	98.66	374 / 374	DAQFCW010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022135 SAMN37819537-rid19815933.denovo.36, whole genome shotgun sequence	11911..12284																																									avrA	DAQFCW010000004.1	114928..115797	99.54	870	0						
GCA_032713385.1_PDT001940364.1_genomic.fna	Salmonella_enterica	0.5199	375.736 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFCX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021302 SAMN37819511-rid19820823.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFCX010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021302 SAMN37819511-rid19820823.guided.14, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	DAQFCX010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021302 SAMN37819511-rid19820823.denovo.22, whole genome shotgun sequence	5285..6145	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQFCX010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021302 SAMN37819511-rid19820823.denovo.22, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQFCX010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021302 SAMN37819511-rid19820823.denovo.22, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQFCX010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021302 SAMN37819511-rid19820823.denovo.22, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQFCX010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021302 SAMN37819511-rid19820823.denovo.22, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	DAQFCX010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021302 SAMN37819511-rid19820823.guided.34, whole genome shotgun sequence	3943..4803	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQFCX010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021302 SAMN37819511-rid19820823.guided.34, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQFCX010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021302 SAMN37819511-rid19820823.guided.34, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQFCX010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021302 SAMN37819511-rid19820823.guided.34, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQFCX010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021302 SAMN37819511-rid19820823.guided.34, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFCX010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021302 SAMN37819511-rid19820823.denovo.21, whole genome shotgun sequence	35233..35875	enterobacteriales	IncFII(S)	100	262 / 262	DAQFCX010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021302 SAMN37819511-rid19820823.denovo.31, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	98.66	374 / 374	DAQFCX010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021302 SAMN37819511-rid19820823.denovo.22, whole genome shotgun sequence	11911..12284																																									avrA	DAQFCX010000007.1	115373..116242	99.54	870	0						
GCA_032713405.1_PDT001940298.1_genomic.fna	Salmonella_enterica	0.5222	103.306 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_112,sucA_9,thrA_2	313	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_112	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQFDA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047637 SAMN37820039-rid19815903.denovo.01, whole genome shotgun sequence	378819..379256	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQFDA010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047637 SAMN37820039-rid19815903.guided.29, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col440I	94.74	114 / 114	DAQFDA010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047637 SAMN37820039-rid19815903.denovo.77, whole genome shotgun sequence	337..450	enterobacteriales	IncFIB(S)	100	643 / 643	DAQFDA010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047637 SAMN37820039-rid19815903.denovo.13, whole genome shotgun sequence	48443..49085		enterobacteriales	IncFII(S)	100	262 / 262	DAQFDA010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047637 SAMN37820039-rid19815903.denovo.13, whole genome shotgun sequence	64170..64431																																									avrA	DAQFDA010000006.1	107944..108813	99.77	870	0						
GCA_032713425.1_PDT001940306.1_genomic.fna	Salmonella_enterica	0.5224	80.072 KB	17	aroC_10,dnaN_7,hemD_12,hisD_590,purE_5,sucA_9,thrA_2	2089	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_590	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFCY010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047516 SAMN37820032-rid19820813.denovo.025, whole genome shotgun sequence	12487..12924	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFCY010000125.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047516 SAMN37820032-rid19820813.guided.053, whole genome shotgun sequence	14794..15231	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQFCY010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047516 SAMN37820032-rid19820813.denovo.094, whole genome shotgun sequence	3709..3839	enterobacteriales	IncFIB(S)	100	643 / 643	DAQFCY010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047516 SAMN37820032-rid19820813.denovo.013, whole genome shotgun sequence	14689..15331		enterobacteriales	IncFII(S)	100	262 / 262	DAQFCY010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047516 SAMN37820032-rid19820813.denovo.013, whole genome shotgun sequence	30416..30677																																									avrA	DAQFCY010000034.1	43820..44689	99.885	870	0						
GCA_032713445.1_PDT001940289.1_genomic.fna	Salmonella_enterica	0.5207	123.995 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFCZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00050991 SAMN37820134-rid19820803.denovo.01, whole genome shotgun sequence	145254..145691	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFCZ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00050991 SAMN37820134-rid19820803.guided.14, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFCZ010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00050991 SAMN37820134-rid19820803.denovo.67, whole genome shotgun sequence	965..1118	enterobacteriales	ColRNAI	90.08	131 / 130	DAQFCZ010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00050991 SAMN37820134-rid19820803.denovo.63, whole genome shotgun sequence	3981..4111		enterobacteriales	IncFIB(S)	100	643 / 643	DAQFCZ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00050991 SAMN37820134-rid19820803.denovo.15, whole genome shotgun sequence	48425..49067		enterobacteriales	IncFII(S)	100	262 / 262	DAQFCZ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00050991 SAMN37820134-rid19820803.denovo.15, whole genome shotgun sequence	64152..64413																																		avrA	DAQFCZ010000005.1	122444..123313	99.885	870	0						
GCA_032713465.1_PDT001940277.1_genomic.fna	Salmonella_enterica	0.5208	262.803 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aadA1,aadA2b,aac(6')-Iaa,aadA1,aadA2b,blaTEM-1B,blaTEM-1B,cmlA1,cmlA1,cmlA1,sul3,sul3	1	gyrA_p.D87N	3	IncFIB(S),IncFII(S),IncFII(pSE11),IncFII(pSE11)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFDB010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.denovo.03, whole genome shotgun sequence	171651..172088	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	DAQFDB010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.denovo.30, whole genome shotgun sequence	4645..5436	Spectinomycin, Streptomycin	JQ414041	aadA2b	99.87	780/780	DAQFDB010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.denovo.30, whole genome shotgun sequence	7050..7829	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	96.35	438/438	DAQFDB010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.guided.21, whole genome shotgun sequence	15555..15992	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	DAQFDB010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.guided.32, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aadA2b	99.87	780/780	DAQFDB010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.guided.34, whole genome shotgun sequence	2621..3400	Spectinomycin, Streptomycin	D43625	blaTEM-1B	100	861/861	DAQFDB010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.denovo.18, whole genome shotgun sequence	185..1045	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQFDB010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.guided.35, whole genome shotgun sequence	226..1086	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	DAQFDB010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.denovo.30, whole genome shotgun sequence	5529..6788	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	DAQFDB010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.guided.32, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	DAQFDB010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.guided.34, whole genome shotgun sequence	3662..4921	Chloramphenicol	M64556	sul3	100	792/792	DAQFDB010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.denovo.30, whole genome shotgun sequence	2172..2963	Sulfamethoxazole	AJ459418	sul3	100	792/792	DAQFDB010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.guided.32, whole genome shotgun sequence	4281..5072	Sulfamethoxazole	AJ459418																																																																																																																																																																																																																																																																																																																																																																													gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFDB010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.denovo.23, whole genome shotgun sequence	40522..41164	enterobacteriales	IncFII(S)	100	262 / 262	DAQFDB010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.denovo.31, whole genome shotgun sequence	3433..3694		enterobacteriales	IncFII(pSE11)	99.24	264 / 264	DAQFDB010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.denovo.18, whole genome shotgun sequence	5159..5422		enterobacteriales	IncFII(pSE11)	99.17	241 / 264	DAQFDB010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073202 SAMN37820145-rid19820783.guided.35, whole genome shotgun sequence	5200..5440																																		avrA	DAQFDB010000015.1	140846..141715	99.54	870	0						
GCA_032713475.1_PDT001940228.1_genomic.fna	Salmonella_enterica	0.5226	70.445 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFDC010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045168 SAMN37819814-rid19813153.denovo.021, whole genome shotgun sequence	12504..12941	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFDC010000139.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045168 SAMN37819814-rid19813153.guided.041, whole genome shotgun sequence	34213..34650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFDC010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045168 SAMN37819814-rid19813153.denovo.012, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	DAQFDC010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045168 SAMN37819814-rid19813153.denovo.012, whole genome shotgun sequence	64139..64400																																																avrA	DAQFDC010000042.1	39625..40494	99.885	870	0						
GCA_032713505.1_PDT001940194.1_genomic.fna	Salmonella_enterica	0.5223	49.428 KB	31	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFDD010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046056 SAMN37819932-rid19818603.denovo.070, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFDD010000177.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046056 SAMN37819932-rid19818603.guided.099, whole genome shotgun sequence	15466..15903	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	DAQFDD010000134.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046056 SAMN37819932-rid19818603.denovo.137, whole genome shotgun sequence	483..636	enterobacteriales	IncFIB(S)	100	643 / 643	DAQFDD010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046056 SAMN37819932-rid19818603.denovo.008, whole genome shotgun sequence	43078..43720		enterobacteriales	IncFII(S)	100	262 / 262	DAQFDD010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046056 SAMN37819932-rid19818603.denovo.008, whole genome shotgun sequence	58805..59066		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFDD010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046056 SAMN37819932-rid19818603.denovo.046, whole genome shotgun sequence	22488..22624																																		avrA	DAQFDD010000039.1	39625..40494	99.885	870	0						
GCA_032713525.1_PDT001940184.1_genomic.fna	Salmonella_enterica	0.5215	79.921 KB	22	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFDE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046212 SAMN37819941-rid19817233.denovo.001, whole genome shotgun sequence	12525..12962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFDE010000135.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046212 SAMN37819941-rid19817233.guided.024, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFDE010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046212 SAMN37819941-rid19817233.denovo.013, whole genome shotgun sequence	48407..49049	enterobacteriales	IncFII(S)	100	262 / 262	DAQFDE010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046212 SAMN37819941-rid19817233.denovo.013, whole genome shotgun sequence	64134..64395		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFDE010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046212 SAMN37819941-rid19817233.denovo.046, whole genome shotgun sequence	22488..22624																																									avrA	DAQFDE010000043.1	39625..40494	99.885	870	0						
GCA_032713535.1_PDT001940079.1_genomic.fna	Salmonella_enterica	0.5221	256.381 KB	8	aroC_139,dnaN_174,hemD_68,hisD_132,purE_133,sucA_9,thrA_168	578	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_139	dnaN	100	100	dnaN_174	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_133	sucA	100	100	sucA_9	thrA	100	100	thrA_168	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQFDF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00027783 SAMN37819634-rid19815873.denovo.01, whole genome shotgun sequence	146091..146528	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQFDF010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00027783 SAMN37819634-rid19815873.guided.31, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFDF010000004.1	113526..114395	99.195	870	0						
GCA_032713565.1_PDT001940004.1_genomic.fna	Salmonella_enterica	0.521	249.008 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFDG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046479 SAMN37819961-rid19815863.denovo.01, whole genome shotgun sequence	145323..145760	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFDG010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046479 SAMN37819961-rid19815863.guided.14, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFDG010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046479 SAMN37819961-rid19815863.denovo.16, whole genome shotgun sequence	68513..69155	enterobacteriales	IncFII(S)	100	262 / 262	DAQFDG010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046479 SAMN37819961-rid19815863.denovo.16, whole genome shotgun sequence	84240..84501																																																avrA	DAQFDG010000006.1	159049..159918	99.885	870	0						
GCA_032713585.1_PDT001939990.1_genomic.fna	Salmonella_enterica	0.5229	50.609 KB	33	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFDH010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046681 SAMN37819974-rid19820743.denovo.075, whole genome shotgun sequence	12471..12908	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFDH010000182.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046681 SAMN37819974-rid19820743.guided.040, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFDH010000137.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046681 SAMN37819974-rid19820743.denovo.140, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQFDH010000107.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046681 SAMN37819974-rid19820743.denovo.110, whole genome shotgun sequence	9140..9782		enterobacteriales	IncFII(S)	100	262 / 262	DAQFDH010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046681 SAMN37819974-rid19820743.denovo.009, whole genome shotgun sequence	12997..13258																																									avrA	DAQFDH010000005.1	99938..100807	99.885	870	0						
GCA_032713605.1_PDT001939821.1_genomic.fna	Salmonella_enterica	0.5215	103.726 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFDI010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047041 SAMN37820010-rid19820713.denovo.14, whole genome shotgun sequence	15499..15936	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFDI010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047041 SAMN37820010-rid19820713.guided.48, whole genome shotgun sequence	14572..15009	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFDI010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047041 SAMN37820010-rid19820713.denovo.19, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQFDI010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047041 SAMN37820010-rid19820713.denovo.19, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFDI010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047041 SAMN37820010-rid19820713.denovo.20, whole genome shotgun sequence	15833..15969																																									avrA	DAQFDI010000003.1	108245..109114	99.885	870	0						
GCA_032713625.1_PDT001939775.1_genomic.fna	Salmonella_enterica	0.5204	258.402 KB	7	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQFDK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00021694 SAMN37819525-rid19815813.denovo.01, whole genome shotgun sequence	38306..38743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQFDK010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00021694 SAMN37819525-rid19815813.guided.24, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	97.71	262 / 262	DAQFDK010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00021694 SAMN37819525-rid19815813.denovo.19, whole genome shotgun sequence	44968..45227																																																						avrA	DAQFDK010000004.1	125276..126145	98.966	870	0						
GCA_032713645.1_PDT001939813.1_genomic.fna	Salmonella_enterica	0.5218	81.717 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFDJ010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049086 SAMN37820105-rid19817123.denovo.027, whole genome shotgun sequence	12496..12933	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFDJ010000115.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049086 SAMN37820105-rid19817123.guided.033, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFDJ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049086 SAMN37820105-rid19817123.denovo.014, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQFDJ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049086 SAMN37820105-rid19817123.denovo.014, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFDJ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049086 SAMN37820105-rid19817123.denovo.016, whole genome shotgun sequence	15829..15965																																									avrA	DAQFDJ010000040.1	39625..40494	99.885	870	0						
GCA_032713665.1_PDT001927420.1_genomic.fna	Salmonella_enterica	0.5214	398.7 KB	4	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aph(6)-Id,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNVZZ010000001.1 Salmonella enterica strain PNUSAS390845 SAMN37805946-rid19709103.denovo.01, whole genome shotgun sequence	492159..492596	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNVZZ010000007.1 Salmonella enterica strain PNUSAS390845 SAMN37805946-rid19709103.denovo.07, whole genome shotgun sequence	277823..278659	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNVZZ010000007.1 Salmonella enterica strain PNUSAS390845 SAMN37805946-rid19709103.denovo.07, whole genome shotgun sequence	278877..279690	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	V00359	aph(3'')-Ib	100	804/804	ABNVZZ010000007.1 Salmonella enterica strain PNUSAS390845 SAMN37805946-rid19709103.denovo.07, whole genome shotgun sequence	277020..277823	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNVZZ010000028.1 Salmonella enterica strain PNUSAS390845 SAMN37805946-rid19709103.guided.22, whole genome shotgun sequence	433..1269	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNVZZ010000028.1 Salmonella enterica strain PNUSAS390845 SAMN37805946-rid19709103.guided.22, whole genome shotgun sequence	1487..2300	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	V00359	aph(6)-Id	100	837/837	ABNVZZ010000029.1 Salmonella enterica strain PNUSAS390845 SAMN37805946-rid19709103.guided.23, whole genome shotgun sequence	2031..2867	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNVZZ010000029.1 Salmonella enterica strain PNUSAS390845 SAMN37805946-rid19709103.guided.23, whole genome shotgun sequence	1228..2031	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNVZZ010000033.1 Salmonella enterica strain PNUSAS390845 SAMN37805946-rid19709103.guided.28, whole genome shotgun sequence	972..1409	Amikacin, Tobramycin	NC_003197	sul2	99.88	816/816	ABNVZZ010000005.1 Salmonella enterica strain PNUSAS390845 SAMN37805946-rid19709103.denovo.05, whole genome shotgun sequence	346212..347027	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNVZZ010000031.1 Salmonella enterica strain PNUSAS390845 SAMN37805946-rid19709103.guided.25, whole genome shotgun sequence	23..838	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNVZZ010000020.1 Salmonella enterica strain PNUSAS390845 SAMN37805946-rid19709103.denovo.20, whole genome shotgun sequence	1194..2399	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNVZZ010000027.1 Salmonella enterica strain PNUSAS390845 SAMN37805946-rid19709103.guided.21, whole genome shotgun sequence	2817..4022	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																													parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNVZZ010000012.1	94022..94890	99.655	869	0						
GCA_032713675.1_PDT001927416.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWAC010000001.1 Salmonella enterica strain PNUSAS390832 SAMN37805948-rid19707293.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWAC010000024.1 Salmonella enterica strain PNUSAS390832 SAMN37805948-rid19707293.guided.19, whole genome shotgun sequence	5082..5519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWAC010000011.1 Salmonella enterica strain PNUSAS390832 SAMN37805948-rid19707293.denovo.11, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	ABNWAC010000015.1 Salmonella enterica strain PNUSAS390832 SAMN37805948-rid19707293.denovo.18, whole genome shotgun sequence	3330..3591																																																avrA	ABNWAC010000002.1	553636..554505	99.54	870	0						
GCA_032713715.1_PDT001927419.1_genomic.fna	Salmonella_enterica	0.5214	207.445 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWAA010000007.1 Salmonella enterica strain PNUSAS390846 SAMN37805947-rid19710013.denovo.07, whole genome shotgun sequence	145320..145757	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWAA010000050.1 Salmonella enterica strain PNUSAS390846 SAMN37805947-rid19710013.guided.34, whole genome shotgun sequence	3250..3687	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABNWAA010000036.1 Salmonella enterica strain PNUSAS390846 SAMN37805947-rid19710013.denovo.39, whole genome shotgun sequence	483..636																																																						avrA	ABNWAA010000005.1	184086..184954	99.77	870	0						
GCA_032713725.1_PDT001927418.1_genomic.fna	Salmonella_enterica	0.5214	697.082 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWAB010000001.1 Salmonella enterica strain PNUSAS390843 SAMN37805944-rid19709093.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWAB010000022.1 Salmonella enterica strain PNUSAS390843 SAMN37805944-rid19709093.guided.19, whole genome shotgun sequence	243..680	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWAB010000014.1 Salmonella enterica strain PNUSAS390843 SAMN37805944-rid19709093.denovo.14, whole genome shotgun sequence	12308..12950	enterobacteriales	IncFII(S)	100	262 / 262	ABNWAB010000016.1 Salmonella enterica strain PNUSAS390843 SAMN37805944-rid19709093.denovo.17, whole genome shotgun sequence	3392..3653																																																avrA	ABNWAB010000002.1	553636..554505	99.54	870	0						
GCA_032713785.1_PDT001927409.1_genomic.fna	Salmonella_enterica	0.5219	523.055 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	10	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrB19,qnrA1,qnrB19,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWAG010000001.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.denovo.01, whole genome shotgun sequence	172199..172636	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNWAG010000027.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.denovo.32, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNWAG010000047.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.guided.16, whole genome shotgun sequence	12442..12879	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNWAG010000050.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.guided.31, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNWAG010000027.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.denovo.32, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNWAG010000050.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.guided.31, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNWAG010000024.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.denovo.28, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNWAG010000049.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.guided.27, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNWAG010000022.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.denovo.25, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNWAG010000051.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.guided.35, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNWAG010000027.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.denovo.32, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrB19	100	645/645	ABNWAG010000031.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.denovo.38, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrA1	100	657/657	ABNWAG010000050.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.guided.31, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	qnrB19	100	645/645	ABNWAG010000053.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.guided.41, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul1	100	840/840	ABNWAG010000034.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.denovo.43, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWAG010000054.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.guided.42, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNWAG010000022.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.denovo.25, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNWAG010000052.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.guided.36, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNWAG010000022.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.denovo.25, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNWAG010000052.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.guided.36, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNWAG010000026.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.denovo.30, whole genome shotgun sequence	1164..1294	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNWAG010000031.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.denovo.38, whole genome shotgun sequence	1150..1280		enterobacteriales	IncR	100	251 / 251	ABNWAG010000019.1 Salmonella enterica strain PNUSAS390746 SAMN37805830-rid19710003.denovo.22, whole genome shotgun sequence	8512..8762																																									avrA	ABNWAG010000002.1	553351..554220	99.77	870	0						
GCA_032713805.1_PDT001927411.1_genomic.fna	Salmonella_enterica	0.5216	241.336 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWAF010000002.1 Salmonella enterica strain 23NM09CG01-S2 isolate PNUSAS390736 SAMN37805828-rid19706513.denovo.02, whole genome shotgun sequence	486533..486970	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWAF010000011.1 Salmonella enterica strain 23NM09CG01-S2 isolate PNUSAS390736 SAMN37805828-rid19706513.denovo.11, whole genome shotgun sequence	112957..113748	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWAF010000011.1 Salmonella enterica strain 23NM09CG01-S2 isolate PNUSAS390736 SAMN37805828-rid19706513.denovo.11, whole genome shotgun sequence	112957..113748	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNWAF010000055.1 Salmonella enterica strain 23NM09CG01-S2 isolate PNUSAS390736 SAMN37805828-rid19706513.guided.38, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWAF010000057.1 Salmonella enterica strain 23NM09CG01-S2 isolate PNUSAS390736 SAMN37805828-rid19706513.guided.43, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWAF010000057.1 Salmonella enterica strain 23NM09CG01-S2 isolate PNUSAS390736 SAMN37805828-rid19706513.guided.43, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNWAF010000011.1 Salmonella enterica strain 23NM09CG01-S2 isolate PNUSAS390736 SAMN37805828-rid19706513.denovo.11, whole genome shotgun sequence	114253..115092	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWAF010000057.1 Salmonella enterica strain 23NM09CG01-S2 isolate PNUSAS390736 SAMN37805828-rid19706513.guided.43, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNWAF010000011.1 Salmonella enterica strain 23NM09CG01-S2 isolate PNUSAS390736 SAMN37805828-rid19706513.denovo.11, whole genome shotgun sequence	127609..128808	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWAF010000056.1 Salmonella enterica strain 23NM09CG01-S2 isolate PNUSAS390736 SAMN37805828-rid19706513.guided.40, whole genome shotgun sequence	7833..9032	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNWAF010000011.1 Salmonella enterica strain 23NM09CG01-S2 isolate PNUSAS390736 SAMN37805828-rid19706513.denovo.11, whole genome shotgun sequence	84926..85485																																																						avrA	ABNWAF010000012.1	104188..105057	99.655	870	0						
GCA_032713825.1_PDT001927406.1_genomic.fna	Salmonella_enterica	0.5168	133.302 KB	11	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	4	IncHI2,IncHI2A,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWAI010000019.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.denovo.019, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWAI010000042.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.denovo.042, whole genome shotgun sequence	3002..3838	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWAI010000042.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.denovo.042, whole genome shotgun sequence	2200..3002	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWAI010000042.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.denovo.042, whole genome shotgun sequence	2199..3002	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWAI010000042.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.denovo.042, whole genome shotgun sequence	2199..3002	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWAI010000042.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.denovo.042, whole genome shotgun sequence	2199..3002	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNWAI010000135.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.guided.043, whole genome shotgun sequence	2243..3079	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWAI010000135.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.guided.043, whole genome shotgun sequence	1441..2243	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWAI010000135.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.guided.043, whole genome shotgun sequence	1440..2243	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWAI010000135.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.guided.043, whole genome shotgun sequence	1440..2243	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWAI010000135.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.guided.043, whole genome shotgun sequence	1440..2243	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNWAI010000137.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.guided.069, whole genome shotgun sequence	5144..5581	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNWAI010000040.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.denovo.040, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNWAI010000136.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.guided.061, whole genome shotgun sequence	5688..6893	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNWAI010000038.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.denovo.038, whole genome shotgun sequence	6902..7228	enterobacteriales	IncHI2A	99.52	630 / 630	ABNWAI010000038.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.denovo.038, whole genome shotgun sequence	25212..25841		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNWAI010000040.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.denovo.040, whole genome shotgun sequence	8878..9019		enterobacteriales	IncX1	100	373 / 373	ABNWAI010000073.1 Salmonella enterica strain 23NM09CG01-S1 isolate PNUSAS390737 SAMN37805829-rid19707283.denovo.076, whole genome shotgun sequence	2218..2590																																		avrA	ABNWAI010000015.1	94214..95083	99.655	870	0						
GCA_032713845.1_PDT001927408.1_genomic.fna	Salmonella_enterica	0.5213	273.328 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWAH010000002.1 Salmonella enterica strain PNUSAS390733 SAMN37805835-rid19709083.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWAH010000039.1 Salmonella enterica strain PNUSAS390733 SAMN37805835-rid19709083.guided.18, whole genome shotgun sequence	20617..21054	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNWAH010000016.1 Salmonella enterica strain PNUSAS390733 SAMN37805835-rid19709083.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNWAH010000016.1 Salmonella enterica strain PNUSAS390733 SAMN37805835-rid19709083.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABNWAH010000005.1	174651..175519	100	869	0						
GCA_032713865.1_PDT001927405.1_genomic.fna	Salmonella_enterica	0.5213	299.373 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWAJ010000001.1 Salmonella enterica strain PNUSAS390741 SAMN37805831-rid19705443.denovo.01, whole genome shotgun sequence	519287..519724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWAJ010000039.1 Salmonella enterica strain PNUSAS390741 SAMN37805831-rid19705443.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWAJ010000013.1	95073..95941	99.195	870	0						
GCA_032713885.1_PDT001927404.1_genomic.fna	Salmonella_enterica	0.5217	540.413 KB	3	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWAK010000001.1 Salmonella enterica strain PNUSAS390742 SAMN37805834-rid19711033.denovo.01, whole genome shotgun sequence	500893..501330	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWAK010000022.1 Salmonella enterica strain PNUSAS390742 SAMN37805834-rid19711033.guided.18, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWAK010000002.1	171473..172342	98.966	870	0						
GCA_032713905.1_PDT001927403.1_genomic.fna	Salmonella_enterica	0.5209	250.497 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWAL010000001.1 Salmonella enterica strain PNUSAS390740 SAMN37805826-rid19708113.denovo.01, whole genome shotgun sequence	381672..382109	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWAL010000045.1 Salmonella enterica strain PNUSAS390740 SAMN37805826-rid19708113.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWAL010000002.1	208058..208926	99.77	870	0						
GCA_032713925.1_PDT001927400.1_genomic.fna	Salmonella_enterica	0.5211	489.854 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWAN010000001.1 Salmonella enterica strain PNUSAS390739 SAMN37805824-rid19705423.denovo.01, whole genome shotgun sequence	276184..276621	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWAN010000027.1 Salmonella enterica strain PNUSAS390739 SAMN37805824-rid19705423.guided.16, whole genome shotgun sequence	2166..2603	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWAN010000015.1 Salmonella enterica strain PNUSAS390739 SAMN37805824-rid19705423.denovo.15, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNWAN010000018.1 Salmonella enterica strain PNUSAS390739 SAMN37805824-rid19705423.denovo.21, whole genome shotgun sequence	3425..3686																																																avrA	ABNWAN010000002.1	553181..554050	99.54	870	0						
GCA_032713945.1_PDT001927401.1_genomic.fna	Salmonella_enterica	0.5215	718.045 KB	3	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_58,thrA_4	412	4:e,h:1,5	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1C,blaTEM-1C	1	parC_p.T57S	3	Col(pHAD28),Col440II,Col440II,ColpVC,ColpVC	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_58	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNWAM010000002.1 Salmonella enterica strain 23NM09GT06-S1 isolate PNUSAS390735 SAMN37805827-rid19706503.denovo.02, whole genome shotgun sequence	625461..625898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNWAM010000026.1 Salmonella enterica strain 23NM09GT06-S1 isolate PNUSAS390735 SAMN37805827-rid19706503.guided.15, whole genome shotgun sequence	10893..11330	Amikacin, Tobramycin	NC_003197	blaTEM-1C	100	861/861	ABNWAM010000017.1 Salmonella enterica strain 23NM09GT06-S1 isolate PNUSAS390735 SAMN37805827-rid19706503.denovo.19, whole genome shotgun sequence	5036..5896	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1C	100	861/861	ABNWAM010000028.1 Salmonella enterica strain 23NM09GT06-S1 isolate PNUSAS390735 SAMN37805827-rid19706503.guided.20, whole genome shotgun sequence	4547..5407	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNWAM010000017.1 Salmonella enterica strain 23NM09GT06-S1 isolate PNUSAS390735 SAMN37805827-rid19706503.denovo.19, whole genome shotgun sequence	1939..2067	enterobacteriales	Col440II	98.23	282 / 282	ABNWAM010000017.1 Salmonella enterica strain 23NM09GT06-S1 isolate PNUSAS390735 SAMN37805827-rid19706503.denovo.19, whole genome shotgun sequence	2645..2926		enterobacteriales	Col440II	98.23	282 / 282	ABNWAM010000028.1 Salmonella enterica strain 23NM09GT06-S1 isolate PNUSAS390735 SAMN37805827-rid19706503.guided.20, whole genome shotgun sequence	7517..7798		enterobacteriales	ColpVC	96.89	193 / 193	ABNWAM010000020.1 Salmonella enterica strain 23NM09GT06-S1 isolate PNUSAS390735 SAMN37805827-rid19706503.denovo.24, whole genome shotgun sequence	1524..1716		enterobacteriales	ColpVC	98.96	193 / 193	ABNWAM010000021.1 Salmonella enterica strain 23NM09GT06-S1 isolate PNUSAS390735 SAMN37805827-rid19706503.denovo.25, whole genome shotgun sequence	805..997																											avrA	ABNWAM010000006.1	95281..96150	99.54	870	0						
GCA_032713965.1_PDT001927399.1_genomic.fna	Salmonella_enterica	0.5201	426.089 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(p14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWAO010000001.1 Salmonella enterica strain PNUSAS390738 SAMN37805822-rid19709993.denovo.01, whole genome shotgun sequence	474530..474967	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWAO010000026.1 Salmonella enterica strain PNUSAS390738 SAMN37805822-rid19709993.guided.18, whole genome shotgun sequence	8088..8525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNWAO010000012.1 Salmonella enterica strain PNUSAS390738 SAMN37805822-rid19709993.denovo.12, whole genome shotgun sequence	17040..17682	enterobacteriales	IncFII(p14)	92.02	263 / 262	ABNWAO010000012.1 Salmonella enterica strain PNUSAS390738 SAMN37805822-rid19709993.denovo.12, whole genome shotgun sequence	33612..33870																																																avrA	ABNWAO010000002.1	498412..498973	99.645	563	0	avrA	ABNWAO010000002.1	498973..499231	98.842	259	1.01e-130
GCA_032713985.1_PDT001927398.1_genomic.fna	Salmonella_enterica	0.5206	224.036 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pSE11)	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWAP010000008.1 Salmonella enterica strain PNUSAS390732 SAMN37805821-rid19709073.denovo.08, whole genome shotgun sequence	82764..83201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWAP010000053.1 Salmonella enterica strain PNUSAS390732 SAMN37805821-rid19709073.guided.25, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNWAP010000032.1 Salmonella enterica strain PNUSAS390732 SAMN37805821-rid19709073.denovo.35, whole genome shotgun sequence	14190..14449																																																						avrA	ABNWAP010000006.1	100579..101448	99.655	870	0						
GCA_032714035.1_PDT001927389.1_genomic.fna	Salmonella_enterica	0.5212	521.074 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNWAR010000001.1 Salmonella enterica strain PNUSAS390724 SAMN37805690-rid19709983.denovo.01, whole genome shotgun sequence	781450..781887	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNWAR010000025.1 Salmonella enterica strain PNUSAS390724 SAMN37805690-rid19709983.guided.14, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWAR010000002.1	149711..150581	99.426	871	0						
GCA_032714055.1_PDT001927387.1_genomic.fna	Salmonella_enterica	0.5198	363.639 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWAU010000001.1 Salmonella enterica strain PNUSAS390723 SAMN37805693-rid19711023.denovo.01, whole genome shotgun sequence	477368..477805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWAU010000028.1 Salmonella enterica strain PNUSAS390723 SAMN37805693-rid19711023.guided.18, whole genome shotgun sequence	31475..31912	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWAU010000011.1	94851..95719	99.195	870	0						
GCA_032714075.1_PDT001927388.1_genomic.fna	Salmonella_enterica	0.5225	397.347 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWAS010000001.1 Salmonella enterica strain PNUSAS390725 SAMN37805692-rid19709973.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWAS010000030.1 Salmonella enterica strain PNUSAS390725 SAMN37805692-rid19709973.guided.14, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWAS010000003.1	39430..40299	99.655	870	0						
GCA_032714115.1_PDT001927386.1_genomic.fna	Salmonella_enterica	0.521	446.296 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWAT010000001.1 Salmonella enterica strain PNUSAS390730 SAMN37805694-rid19708103.denovo.01, whole genome shotgun sequence	470059..470496	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWAT010000028.1 Salmonella enterica strain PNUSAS390730 SAMN37805694-rid19708103.guided.11, whole genome shotgun sequence	36708..37145	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWAT010000008.1	174141..175009	99.54	870	0						
GCA_032714135.1_PDT001927385.1_genomic.fna	Salmonella_enterica	0.5212	478.497 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWAV010000001.1 Salmonella enterica strain PNUSAS390726 SAMN37805695-rid19705403.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWAV010000025.1 Salmonella enterica strain PNUSAS390726 SAMN37805695-rid19705403.guided.20, whole genome shotgun sequence	6822..7259	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWAV010000016.1 Salmonella enterica strain PNUSAS390726 SAMN37805695-rid19705403.denovo.17, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNWAV010000016.1 Salmonella enterica strain PNUSAS390726 SAMN37805695-rid19705403.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABNWAV010000002.1	553635..554504	99.54	870	0						
GCA_032714155.1_PDT001927384.1_genomic.fna	Salmonella_enterica	0.5221	263.453 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWAW010000001.1 Salmonella enterica strain PNUSAS390720 SAMN37805691-rid19711013.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWAW010000034.1 Salmonella enterica strain PNUSAS390720 SAMN37805691-rid19711013.guided.14, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWAW010000002.1	149646..150515	99.655	870	0						
GCA_032714215.1_PDT001927381.1_genomic.fna	Salmonella_enterica	0.5218	366.725 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWAY010000001.1 Salmonella enterica strain PNUSAS390729 SAMN37805682-rid19707273.denovo.01, whole genome shotgun sequence	558424..558861	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWAY010000035.1 Salmonella enterica strain PNUSAS390729 SAMN37805682-rid19707273.guided.22, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWAY010000012.1	93870..94738	99.195	870	0						
GCA_032714235.1_PDT001927380.1_genomic.fna	Salmonella_enterica	0.5215	441.731 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWBC010000001.1 Salmonella enterica strain PNUSAS390721 SAMN37805681-rid19706473.denovo.01, whole genome shotgun sequence	608484..608921	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWBC010000028.1 Salmonella enterica strain PNUSAS390721 SAMN37805681-rid19706473.guided.11, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWBC010000004.1	401380..402249	99.655	870	0						
GCA_032714255.1_PDT001927379.1_genomic.fna	Salmonella_enterica	0.5208	365.033 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWBA010000001.1 Salmonella enterica strain PNUSAS390728 SAMN37805686-rid19709963.denovo.01, whole genome shotgun sequence	498125..498562	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWBA010000028.1 Salmonella enterica strain PNUSAS390728 SAMN37805686-rid19709963.guided.13, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWBA010000008.1	140447..141316	99.425	870	0						
GCA_032714275.1_PDT001927378.1_genomic.fna	Salmonella_enterica	0.5215	116.999 KB	13	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWBB010000033.1 Salmonella enterica strain PNUSAS390722 SAMN37805685-rid19709953.denovo.35, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWBB010000067.1 Salmonella enterica strain PNUSAS390722 SAMN37805685-rid19709953.guided.33, whole genome shotgun sequence	10144..10581	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABNWBB010000031.1 Salmonella enterica strain PNUSAS390722 SAMN37805685-rid19709953.denovo.32, whole genome shotgun sequence	25281..25540																																																																	
GCA_032714295.1_PDT001927376.1_genomic.fna	Salmonella_enterica	0.5192	257.409 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWBE010000001.1 Salmonella enterica strain PNUSAS390727 SAMN37805684-rid19708093.denovo.01, whole genome shotgun sequence	485997..486434	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWBE010000038.1 Salmonella enterica strain PNUSAS390727 SAMN37805684-rid19708093.guided.16, whole genome shotgun sequence	44275..44712	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNWBE010000010.1 Salmonella enterica strain PNUSAS390727 SAMN37805684-rid19708093.denovo.10, whole genome shotgun sequence	27816..28238	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNWBE010000040.1 Salmonella enterica strain PNUSAS390727 SAMN37805684-rid19708093.guided.30, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWBE010000003.1	6376..7245	99.195	870	0						
GCA_032714315.1_PDT001927377.1_genomic.fna	Salmonella_enterica	0.5206	396.732 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWBD010000001.1 Salmonella enterica strain PNUSAS390719 SAMN37805683-rid19709943.denovo.01, whole genome shotgun sequence	601477..601914	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWBD010000034.1 Salmonella enterica strain PNUSAS390719 SAMN37805683-rid19709943.guided.13, whole genome shotgun sequence	13553..13990	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.07	643 / 643	ABNWBD010000011.1 Salmonella enterica strain PNUSAS390719 SAMN37805683-rid19709943.denovo.11, whole genome shotgun sequence	29837..30479																																																						avrA	ABNWBD010000010.1	140157..141025	99.195	870	0						
GCA_032714355.1_PDT001927374.1_genomic.fna	Salmonella_enterica	0.5208	366.779 KB	5	aroC_16,dnaN_2,hemD_45,hisD_70,purE_36,sucA_39,thrA_42	164	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_70	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWBG010000001.1 Salmonella enterica strain PNUSAS390685 SAMN37805664-rid19710993.denovo.01, whole genome shotgun sequence	434527..434964	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWBG010000028.1 Salmonella enterica strain PNUSAS390685 SAMN37805664-rid19710993.guided.18, whole genome shotgun sequence	20368..20805	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWBG010000008.1	203359..204227	99.195	870	0						
GCA_032714375.1_PDT001927373.1_genomic.fna	Salmonella_enterica	0.5212	322.339 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWBH010000003.1 Salmonella enterica strain PNUSAS390689 SAMN37805671-rid19709053.denovo.03, whole genome shotgun sequence	334147..334584	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWBH010000033.1 Salmonella enterica strain PNUSAS390689 SAMN37805671-rid19709053.guided.20, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWBH010000001.1	550972..551841	99.195	870	0						
GCA_032714395.1_PDT001939900.1_genomic.fna	Salmonella_enterica	0.5215	101.478 KB	16	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFDL010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040438 SAMN37819767-rid19815833.denovo.30, whole genome shotgun sequence	17222..17659	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFDL010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040438 SAMN37819767-rid19815833.guided.46, whole genome shotgun sequence	25714..26151	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFDL010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040438 SAMN37819767-rid19815833.denovo.35, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQFDL010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040438 SAMN37819767-rid19815833.denovo.67, whole genome shotgun sequence	3415..3676																																																avrA	DAQFDL010000009.1	43550..44419	99.54	870	0						
GCA_032714415.1_PDT001927372.1_genomic.fna	Salmonella_enterica	0.5217	311.93 KB	6	aroC_127,dnaN_81,hemD_111,hisD_564,purE_39,sucA_226,thrA_41	2225	13:b:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_127	dnaN	100	100	dnaN_81	hemD	100	100	hemD_111	hisD	100	100	hisD_564	purE	100	100	purE_39	sucA	100	100	sucA_226	thrA	100	100	thrA_41	13	b	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Durham		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNWBI010000002.1 Salmonella enterica strain PNUSAS390713 SAMN37805676-rid19710983.denovo.02, whole genome shotgun sequence	169658..170095	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNWBI010000040.1 Salmonella enterica strain PNUSAS390713 SAMN37805676-rid19710983.guided.18, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWBI010000001.1	172747..173616	98.966	870	0						
GCA_032714435.1_PDT001927371.1_genomic.fna	Salmonella_enterica	0.5222	350.99 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWBJ010000001.1 Salmonella enterica strain PNUSAS390718 SAMN37805674-rid19707263.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWBJ010000030.1 Salmonella enterica strain PNUSAS390718 SAMN37805674-rid19707263.guided.14, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWBJ010000003.1	39524..40393	99.655	870	0						
GCA_032714455.1_PDT001927369.1_genomic.fna	Salmonella_enterica	0.5218	456.422 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWBK010000001.1 Salmonella enterica strain PNUSAS390717 SAMN37805677-rid19710973.denovo.01, whole genome shotgun sequence	387185..387622	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWBK010000025.1 Salmonella enterica strain PNUSAS390717 SAMN37805677-rid19710973.guided.12, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWBK010000005.1	401371..402240	99.655	870	0						
GCA_032714535.1_PDT001927364.1_genomic.fna	Salmonella_enterica	0.5218	535.496 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWBO010000001.1 Salmonella enterica strain PNUSAS390687 SAMN37805666-rid19709933.denovo.01, whole genome shotgun sequence	828248..828685	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWBO010000024.1 Salmonella enterica strain PNUSAS390687 SAMN37805666-rid19709933.guided.12, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWBO010000002.1	401362..402231	99.655	870	0						
GCA_032714555.1_PDT001927363.1_genomic.fna	Salmonella_enterica	0.5214	419.061 KB	5	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWBP010000005.1 Salmonella enterica strain PNUSAS390691 SAMN37805668-rid19709043.denovo.05, whole genome shotgun sequence	281411..281848	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWBP010000021.1 Salmonella enterica strain PNUSAS390691 SAMN37805668-rid19709043.guided.14, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWBP010000001.1	544780..545648	99.425	870	0						
GCA_032714575.1_PDT001927368.1_genomic.fna	Salmonella_enterica	0.5218	263.489 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWBL010000001.1 Salmonella enterica strain PNUSAS390715 SAMN37805673-rid19708083.denovo.01, whole genome shotgun sequence	575258..575695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWBL010000031.1 Salmonella enterica strain PNUSAS390715 SAMN37805673-rid19708083.guided.15, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWBL010000002.1	149551..150420	99.655	870	0						
GCA_032714635.1_PDT001927366.1_genomic.fna	Salmonella_enterica	0.5223	639.751 KB	3	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNWBN010000001.1 Salmonella enterica strain PNUSAS390690 SAMN37805669-rid19706463.denovo.01, whole genome shotgun sequence	492161..492598	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNWBN010000024.1 Salmonella enterica strain PNUSAS390690 SAMN37805669-rid19706463.guided.17, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWBN010000003.1	544868..545736	99.655	869	0						
GCA_032714695.1_PDT001927367.1_genomic.fna	Salmonella_enterica	0.5216	222.51 KB	6	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWBM010000001.1 Salmonella enterica strain PNUSAS390716 SAMN37805672-rid19710963.denovo.01, whole genome shotgun sequence	368605..369042	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWBM010000052.1 Salmonella enterica strain PNUSAS390716 SAMN37805672-rid19710963.guided.34, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032714715.1_PDT001927362.1_genomic.fna	Salmonella_enterica	0.5196	728.783 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWBQ010000001.1 Salmonella enterica strain PNUSAS390712 SAMN37805665-rid19709923.denovo.01, whole genome shotgun sequence	395431..395868	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWBQ010000021.1 Salmonella enterica strain PNUSAS390712 SAMN37805665-rid19709923.guided.11, whole genome shotgun sequence	42442..42879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWBQ010000002.1	561280..562150	99.656	871	0						
GCA_032714755.1_PDT001927361.1_genomic.fna	Salmonella_enterica	0.5216	205.99 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWBR010000001.1 Salmonella enterica strain PNUSAS390714 SAMN37805667-rid19707253.denovo.01, whole genome shotgun sequence	368587..369024	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWBR010000051.1 Salmonella enterica strain PNUSAS390714 SAMN37805667-rid19707253.guided.15, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032714775.1_PDT001927360.1_genomic.fna	Salmonella_enterica	0.5216	321.48 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWBS010000001.1 Salmonella enterica strain PNUSAS390686 SAMN37805670-rid19705373.denovo.01, whole genome shotgun sequence	396147..396584	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWBS010000032.1 Salmonella enterica strain PNUSAS390686 SAMN37805670-rid19705373.guided.15, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032714935.1_PDT001927356.1_genomic.fna	Salmonella_enterica	0.522	244.59 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWBW010000001.1 Salmonella enterica strain PNUSAS390684 SAMN37805662-rid19706453.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWBW010000034.1 Salmonella enterica strain PNUSAS390684 SAMN37805662-rid19706453.guided.12, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWBW010000003.1	39611..40480	99.655	870	0						
GCA_032714975.1_PDT001927355.1_genomic.fna	Salmonella_enterica	0.5214	702.219 KB	4	aroC_5,dnaN_75,hemD_8,hisD_96,purE_39,sucA_146,thrA_97	443	35:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_75	hemD	100	100	hemD_8	hisD	100	100	hisD_96	purE	100	100	purE_39	sucA	100	100	sucA_146	thrA	100	100	thrA_97	35	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Monschaui		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWBX010000003.1 Salmonella enterica strain PNUSAS390608 SAMN37805661-rid19705363.denovo.03, whole genome shotgun sequence	186255..186692	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWBX010000027.1 Salmonella enterica strain PNUSAS390608 SAMN37805661-rid19705363.guided.20, whole genome shotgun sequence	1600..2037	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWBX010000004.1	556261..557130	99.195	870	0						
GCA_032715085.1_PDT001927352.1_genomic.fna	Salmonella_enterica	0.5216	378.335 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWCA010000001.1 Salmonella enterica strain PNUSAS390679 SAMN37805663-rid19709913.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWCA010000034.1 Salmonella enterica strain PNUSAS390679 SAMN37805663-rid19709913.guided.21, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWCA010000005.1	121262..122131	99.31	870	0						
GCA_032715105.1_PDT001927351.1_genomic.fna	Salmonella_enterica	0.5213	265.744 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWCB010000004.1 Salmonella enterica strain PNUSAS390624 SAMN37805660-rid19707243.denovo.04, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWCB010000039.1 Salmonella enterica strain PNUSAS390624 SAMN37805660-rid19707243.guided.26, whole genome shotgun sequence	7480..7917	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNWCB010000021.1 Salmonella enterica strain PNUSAS390624 SAMN37805660-rid19707243.denovo.21, whole genome shotgun sequence	1991..2524																																																						avrA	ABNWCB010000010.1	187511..188380	99.54	870	0						
GCA_032715145.1_PDT001927347.1_genomic.fna	Salmonella_enterica	0.5211	275.099 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWCE010000001.1 Salmonella enterica strain PNUSAS390609 SAMN37805648-rid19710933.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWCE010000037.1 Salmonella enterica strain PNUSAS390609 SAMN37805648-rid19710933.guided.15, whole genome shotgun sequence	34166..34603	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABNWCE010000031.1 Salmonella enterica strain PNUSAS390609 SAMN37805648-rid19710933.denovo.34, whole genome shotgun sequence	4021..4151																																																						avrA	ABNWCE010000003.1	209007..209875	99.77	870	0						
GCA_032715205.1_PDT001927345.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWCF010000001.1 Salmonella enterica strain PNUSAS390617 SAMN37805649-rid19705343.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWCF010000013.1 Salmonella enterica strain PNUSAS390617 SAMN37805649-rid19705343.denovo.13, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABNWCF010000017.1 Salmonella enterica strain PNUSAS390617 SAMN37805649-rid19705343.denovo.19, whole genome shotgun sequence	3431..3692																																																avrA	ABNWCF010000002.1	553636..554505	99.54	870	0						
GCA_032715225.1_PDT001927342.1_genomic.fna	Salmonella_enterica	0.5215	762.296 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWCJ010000001.1 Salmonella enterica strain PNUSAS390683 SAMN37805647-rid19709903.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWCJ010000027.1 Salmonella enterica strain PNUSAS390683 SAMN37805647-rid19709903.guided.15, whole genome shotgun sequence	13834..14271	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNWCJ010000012.1 Salmonella enterica strain PNUSAS390683 SAMN37805647-rid19709903.denovo.12, whole genome shotgun sequence	72230..72371																																																						avrA	ABNWCJ010000004.1	401302..402171	99.655	870	0						
GCA_032715235.1_PDT001927341.1_genomic.fna	Salmonella_enterica	0.5224	397.893 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWCL010000001.1 Salmonella enterica strain PNUSAS390681 SAMN37805646-rid19707223.denovo.01, whole genome shotgun sequence	622355..622792	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWCL010000029.1 Salmonella enterica strain PNUSAS390681 SAMN37805646-rid19707223.guided.14, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWCL010000001.1	1059551..1060420	99.655	870	0						
GCA_032715265.1_PDT001927343.1_genomic.fna	Salmonella_enterica	0.522	367.996 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWCI010000001.1 Salmonella enterica strain PNUSAS390682 SAMN37805645-rid19709023.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWCI010000035.1 Salmonella enterica strain PNUSAS390682 SAMN37805645-rid19709023.guided.22, whole genome shotgun sequence	14405..14842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWCI010000003.1	39526..40395	99.655	870	0						
GCA_032715315.1_PDT001927338.1_genomic.fna	Salmonella_enterica	0.5214	296.977 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWCO010000001.1 Salmonella enterica strain PNUSAS390676 SAMN37805594-rid19708053.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWCO010000031.1 Salmonella enterica strain PNUSAS390676 SAMN37805594-rid19708053.guided.21, whole genome shotgun sequence	14357..14794	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWCO010000007.1	39620..40489	99.31	870	0						
GCA_032715355.1_PDT001927336.1_genomic.fna	Salmonella_enterica	0.5203	319.476 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWCP010000001.1 Salmonella enterica strain PNUSAS390678 SAMN37805637-rid19706413.denovo.01, whole genome shotgun sequence	477368..477805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWCP010000034.1 Salmonella enterica strain PNUSAS390678 SAMN37805637-rid19706413.guided.12, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWCP010000010.1	140075..140943	99.195	870	0						
GCA_032715445.1_PDT001927331.1_genomic.fna	Salmonella_enterica	0.521	405.981 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWCS010000001.1 Salmonella enterica strain PNUSAS390675 SAMN37805591-rid19707203.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWCS010000029.1 Salmonella enterica strain PNUSAS390675 SAMN37805591-rid19707203.guided.19, whole genome shotgun sequence	9899..10336	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWCS010000016.1 Salmonella enterica strain PNUSAS390675 SAMN37805591-rid19707203.denovo.17, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNWCS010000016.1 Salmonella enterica strain PNUSAS390675 SAMN37805591-rid19707203.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABNWCS010000002.1	553322..554191	99.54	870	0						
GCA_032715475.1_PDT001927329.1_genomic.fna	Salmonella_enterica	0.5225	342.65 KB	5	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWCU010000001.1 Salmonella enterica strain PNUSAS390673 SAMN37805597-rid19707193.denovo.01, whole genome shotgun sequence	153914..154351	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWCU010000036.1 Salmonella enterica strain PNUSAS390673 SAMN37805597-rid19707193.guided.17, whole genome shotgun sequence	42396..42833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNWCU010000030.1 Salmonella enterica strain PNUSAS390673 SAMN37805597-rid19707193.denovo.33, whole genome shotgun sequence	1557..1685																																																																	
GCA_032715515.1_PDT001927327.1_genomic.fna	Salmonella_enterica	0.5209	200.375 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWCX010000002.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325655 SAMN37805588-rid19710913.denovo.02, whole genome shotgun sequence	462162..462599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWCX010000035.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325655 SAMN37805588-rid19710913.guided.26, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWCX010000001.1	581281..582150	99.195	870	0						
GCA_032715545.1_PDT001927326.1_genomic.fna	Salmonella_enterica	0.522	261.627 KB	5	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNWCV010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325650 SAMN37805574-rid19708033.denovo.01, whole genome shotgun sequence	334081..334518	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNWCV010000036.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325650 SAMN37805574-rid19708033.guided.22, whole genome shotgun sequence	24878..25315	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWCV010000002.1	124253..125121	99.425	870	0						
GCA_032715605.1_PDT001927324.1_genomic.fna	Salmonella_enterica	0.5216	380.383 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNWCZ010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325649 SAMN37805570-rid19706383.denovo.01, whole genome shotgun sequence	730770..731207	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNWCZ010000027.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325649 SAMN37805570-rid19706383.guided.17, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWCZ010000002.1	149708..150576	99.425	870	0						
GCA_032715645.1_PDT001927318.1_genomic.fna	Salmonella_enterica	0.5209	299.596 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWDE010000001.1 Salmonella enterica strain PNUSAS390674 SAMN37805595-rid19708993.denovo.01, whole genome shotgun sequence	477371..477808	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWDE010000035.1 Salmonella enterica strain PNUSAS390674 SAMN37805595-rid19708993.guided.15, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWDE010000012.1	94893..95761	99.195	870	0						
GCA_032715725.1_PDT001940346.1_genomic.fna	Salmonella_enterica	0.5228	57.592 KB	28	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFDM010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045892 SAMN37819909-rid19818623.denovo.024, whole genome shotgun sequence	15461..15898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFDM010000155.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045892 SAMN37819909-rid19818623.guided.029, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFDM010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045892 SAMN37819909-rid19818623.denovo.010, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQFDM010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045892 SAMN37819909-rid19818623.denovo.010, whole genome shotgun sequence	60371..60632																																																avrA	DAQFDM010000040.1	39625..40494	99.885	870	0						
GCA_032715745.1_PDT001939803.1_genomic.fna	Salmonella_enterica	0.5215	92.746 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFDN010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049231 SAMN37820113-rid19818493.denovo.014, whole genome shotgun sequence	52539..52976	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFDN010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049231 SAMN37820113-rid19818493.guided.007, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFDN010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049231 SAMN37820113-rid19818493.denovo.018, whole genome shotgun sequence	48415..49057	enterobacteriales	IncFII(S)	100	262 / 262	DAQFDN010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049231 SAMN37820113-rid19818493.denovo.018, whole genome shotgun sequence	64142..64403																																																avrA	DAQFDN010000009.1	39625..40494	99.885	870	0						
GCA_032715805.1_PDT001927313.1_genomic.fna	Salmonella_enterica	0.5211	132.844 KB	12	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWDI010000001.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325654 SAMN37805585-rid19709863.denovo.01, whole genome shotgun sequence	382002..382439	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWDI010000070.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325654 SAMN37805585-rid19709863.guided.40, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWDI010000013.1	39536..40405	99.195	870	0						
GCA_032715825.1_PDT001927314.1_genomic.fna	Salmonella_enterica	0.5214	118.935 KB	12	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWDH010000006.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325657 SAMN37805593-rid19706363.denovo.06, whole genome shotgun sequence	41246..41683	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWDH010000081.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325657 SAMN37805593-rid19706363.guided.43, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWDH010000013.1	39524..40393	99.195	870	0						
GCA_032715865.1_PDT001927311.1_genomic.fna	Salmonella_enterica	0.5222	203.76 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWDM010000001.1 Salmonella enterica strain PNUSAS390677 SAMN37805592-rid19709853.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWDM010000033.1 Salmonella enterica strain PNUSAS390677 SAMN37805592-rid19709853.guided.13, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWDM010000003.1	39524..40393	99.655	870	0						
GCA_032715945.1_PDT001927307.1_genomic.fna	Salmonella_enterica	0.5205	321.762 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWDO010000001.1 Salmonella enterica strain PNUSAS390672 SAMN37805596-rid19710883.denovo.01, whole genome shotgun sequence	498124..498561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWDO010000041.1 Salmonella enterica strain PNUSAS390672 SAMN37805596-rid19710883.guided.14, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWDO010000008.1	140361..141230	99.425	870	0						
GCA_032715985.1_PDT001927304.1_genomic.fna	Salmonella_enterica	0.5228	50.351 KB	30	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWDR010000018.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325653 SAMN37805581-rid19707183.denovo.018, whole genome shotgun sequence	52246..52683	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWDR010000174.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325653 SAMN37805581-rid19707183.guided.072, whole genome shotgun sequence	11712..12149	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWDR010000032.1	39428..40297	99.195	870	0						
GCA_032716005.1_PDT001927303.1_genomic.fna	Salmonella_enterica	0.5225	164.034 KB	10	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNWDQ010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325651 SAMN37805577-rid19709843.denovo.01, whole genome shotgun sequence	227106..227543	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNWDQ010000059.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325651 SAMN37805577-rid19709843.guided.43, whole genome shotgun sequence	8088..8525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWDQ010000006.1	149706..150574	99.425	870	0						
GCA_032716025.1_PDT001927302.1_genomic.fna	Salmonella_enterica	0.5199	466.369 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWDT010000001.1 Salmonella enterica strain PNUSAS390620 SAMN37805563-rid19709833.denovo.01, whole genome shotgun sequence	287521..287958	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWDT010000024.1 Salmonella enterica strain PNUSAS390620 SAMN37805563-rid19709833.guided.17, whole genome shotgun sequence	8358..8795	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNWDT010000019.1 Salmonella enterica strain PNUSAS390620 SAMN37805563-rid19709833.denovo.22, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNWDT010000012.1 Salmonella enterica strain PNUSAS390620 SAMN37805563-rid19709833.denovo.12, whole genome shotgun sequence	6118..6651		enterobacteriales	IncX1	98.4	374 / 374	ABNWDT010000015.1 Salmonella enterica strain PNUSAS390620 SAMN37805563-rid19709833.denovo.15, whole genome shotgun sequence	6956..7329																																									avrA	ABNWDT010000008.1	150695..151565	99.196	871	0						
GCA_032716045.1_PDT001927300.1_genomic.fna	Salmonella_enterica	0.5217	324.585 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWDU010000002.1 Salmonella enterica strain PNUSAS390632 SAMN37805566-rid19705283.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWDU010000042.1 Salmonella enterica strain PNUSAS390632 SAMN37805566-rid19705283.guided.34, whole genome shotgun sequence	259..696	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABNWDU010000031.1 Salmonella enterica strain PNUSAS390632 SAMN37805566-rid19705283.denovo.32, whole genome shotgun sequence	3010..3140	enterobacteriales	IncFIB(S)	100	643 / 643	ABNWDU010000016.1 Salmonella enterica strain PNUSAS390632 SAMN37805566-rid19705283.denovo.16, whole genome shotgun sequence	48433..49075		enterobacteriales	IncFII(S)	100	262 / 262	ABNWDU010000016.1 Salmonella enterica strain PNUSAS390632 SAMN37805566-rid19705283.denovo.16, whole genome shotgun sequence	64160..64421																																									avrA	ABNWDU010000003.1	401482..402350	100	869	0						
GCA_032716085.1_PDT001927301.1_genomic.fna	Salmonella_enterica	0.5199	754.997 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWDS010000001.1 Salmonella enterica strain PNUSAS390636 SAMN37805564-rid19709823.denovo.01, whole genome shotgun sequence	1278539..1278976	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWDS010000019.1 Salmonella enterica strain PNUSAS390636 SAMN37805564-rid19709823.guided.09, whole genome shotgun sequence	34137..34574	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWDS010000002.1	556191..557059	99.425	870	0						
GCA_032716765.1_PDT001939840.1_genomic.fna	Salmonella_enterica	0.5237	33.248 KB	45	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFEU010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046817 SAMN37819994-rid19815823.denovo.077, whole genome shotgun sequence	11313..11750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFEU010000249.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046817 SAMN37819994-rid19815823.guided.076, whole genome shotgun sequence	14138..14575	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFEU010000136.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046817 SAMN37819994-rid19815823.denovo.139, whole genome shotgun sequence	9180..9822	enterobacteriales	IncFII(S)	100	262 / 262	DAQFEU010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046817 SAMN37819994-rid19815823.denovo.028, whole genome shotgun sequence	29405..29666		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFEU010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046817 SAMN37819994-rid19815823.denovo.034, whole genome shotgun sequence	22488..22624																																									avrA	DAQFEU010000005.1	84023..84892	99.885	870	0						
GCA_032717805.1_PDT001940174.1_genomic.fna	Salmonella_enterica	0.5218	66.545 KB	21	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFGU010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046428 SAMN37819950-rid19819953.denovo.022, whole genome shotgun sequence	12557..12994	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFGU010000124.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046428 SAMN37819950-rid19819953.guided.023, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQFGU010000007.1	105336..106205	99.885	870	0						
GCA_032717825.1_PDT001940320.1_genomic.fna	Salmonella_enterica	0.5219	90.742 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFGR010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047113 SAMN37820019-rid19815923.denovo.06, whole genome shotgun sequence	12503..12940	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFGR010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047113 SAMN37820019-rid19815923.guided.39, whole genome shotgun sequence	31300..31737	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFGR010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047113 SAMN37820019-rid19815923.denovo.15, whole genome shotgun sequence	44669..45311	enterobacteriales	IncFII(S)	100	262 / 262	DAQFGR010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047113 SAMN37820019-rid19815923.denovo.15, whole genome shotgun sequence	60396..60657																																																avrA	DAQFGR010000003.1	108285..109154	99.885	870	0						
GCA_032717845.1_PDT001939880.1_genomic.fna	Salmonella_enterica	0.5209	137.604 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFGV010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045706 SAMN37819871-rid19818523.denovo.08, whole genome shotgun sequence	52515..52952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFGV010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045706 SAMN37819871-rid19818523.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFGV010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045706 SAMN37819871-rid19818523.denovo.20, whole genome shotgun sequence	48407..49049	enterobacteriales	IncFII(S)	100	262 / 262	DAQFGV010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045706 SAMN37819871-rid19818523.denovo.20, whole genome shotgun sequence	64134..64395		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFGV010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045706 SAMN37819871-rid19818523.denovo.43, whole genome shotgun sequence	8597..8733																																									avrA	DAQFGV010000014.1	39625..40494	99.885	870	0						
GCA_032718955.1_PDT001940115.1_genomic.fna	Salmonella_enterica	0.523	165.825 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFIP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00025615 SAMN37819603-rid19822273.denovo.01, whole genome shotgun sequence	477823..478260	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFIP010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00025615 SAMN37819603-rid19822273.guided.39, whole genome shotgun sequence	7352..7789	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFIP010000004.1	95044..95913	99.77	870	0						
GCA_032721035.1_PDT001940202.1_genomic.fna	Salmonella_enterica	0.5216	93.802 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFMM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045411 SAMN37819838-rid19820973.denovo.001, whole genome shotgun sequence	145145..145582	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFMM010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045411 SAMN37819838-rid19820973.guided.039, whole genome shotgun sequence	31259..31696	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFMM010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045411 SAMN37819838-rid19820973.denovo.014, whole genome shotgun sequence	48423..49065	enterobacteriales	IncFII(S)	100	262 / 262	DAQFMM010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045411 SAMN37819838-rid19820973.denovo.014, whole genome shotgun sequence	64150..64411																																																avrA	DAQFMM010000004.1	108197..109066	99.885	870	0						
GCA_032721055.1_PDT001940326.1_genomic.fna	Salmonella_enterica	0.522	116.789 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFML010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047048 SAMN37820014-rid19820003.denovo.01, whole genome shotgun sequence	15510..15947	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFML010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047048 SAMN37820014-rid19820003.guided.41, whole genome shotgun sequence	24986..25423	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFML010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047048 SAMN37820014-rid19820003.denovo.70, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQFML010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047048 SAMN37820014-rid19820003.denovo.18, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	DAQFML010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047048 SAMN37820014-rid19820003.denovo.18, whole genome shotgun sequence	30407..30668																																									avrA	DAQFML010000011.1	101106..101975	99.885	870	0						
GCA_032721075.1_PDT001940137.1_genomic.fna	Salmonella_enterica	0.5226	42.137 KB	38	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFMN010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048566 SAMN37820070-rid19822303.denovo.069, whole genome shotgun sequence	12553..12990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFMN010000249.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048566 SAMN37820070-rid19822303.guided.080, whole genome shotgun sequence	10179..10616	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFMN010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048566 SAMN37820070-rid19822303.denovo.006, whole genome shotgun sequence	43096..43738	enterobacteriales	IncFII(S)	100	262 / 262	DAQFMN010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048566 SAMN37820070-rid19822303.denovo.006, whole genome shotgun sequence	58823..59084																																																avrA	DAQFMN010000031.1	43658..44527	99.885	870	0						
GCA_032721095.1_PDT001940125.1_genomic.fna	Salmonella_enterica	0.5224	184.97 KB	8	aroC_41,dnaN_494,hemD_3,hisD_7,purE_5,sucA_6,thrA_10	3304	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_494	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_6	thrA	100	100	thrA_10	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFMO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025297 SAMN37819594-rid19822283.denovo.01, whole genome shotgun sequence	150127..150564	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFMO010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025297 SAMN37819594-rid19822283.guided.23, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQFMO010000008.1	95375..96244	99.425	870	0						
GCA_032721115.1_PDT001940060.1_genomic.fna	Salmonella_enterica	0.5202	204.863 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFMP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021921 SAMN37819531-rid19822263.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFMP010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021921 SAMN37819531-rid19822263.guided.22, whole genome shotgun sequence	41882..42319	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	DAQFMP010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021921 SAMN37819531-rid19822263.denovo.27, whole genome shotgun sequence	3904..4764	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQFMP010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021921 SAMN37819531-rid19822263.denovo.27, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQFMP010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021921 SAMN37819531-rid19822263.denovo.27, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQFMP010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021921 SAMN37819531-rid19822263.denovo.27, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQFMP010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021921 SAMN37819531-rid19822263.denovo.27, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	DAQFMP010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021921 SAMN37819531-rid19822263.guided.47, whole genome shotgun sequence	3943..4803	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQFMP010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021921 SAMN37819531-rid19822263.guided.47, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQFMP010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021921 SAMN37819531-rid19822263.guided.47, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQFMP010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021921 SAMN37819531-rid19822263.guided.47, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQFMP010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021921 SAMN37819531-rid19822263.guided.47, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFMP010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021921 SAMN37819531-rid19822263.denovo.28, whole genome shotgun sequence	32275..32917	enterobacteriales	IncFII(S)	100	262 / 262	DAQFMP010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021921 SAMN37819531-rid19822263.denovo.41, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	98.66	374 / 374	DAQFMP010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021921 SAMN37819531-rid19822263.denovo.27, whole genome shotgun sequence	10530..10903																																									avrA	DAQFMP010000007.1	115429..116298	99.54	870	0						
GCA_032721135.1_PDT001939983.1_genomic.fna	Salmonella_enterica	0.5215	113.34 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFMQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046731 SAMN37819980-rid19822223.denovo.01, whole genome shotgun sequence	133850..134287	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFMQ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046731 SAMN37819980-rid19822223.guided.09, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFMQ010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046731 SAMN37819980-rid19822223.denovo.12, whole genome shotgun sequence	44669..45311	enterobacteriales	IncFII(S)	100	262 / 262	DAQFMQ010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046731 SAMN37819980-rid19822223.denovo.12, whole genome shotgun sequence	60396..60657																																																avrA	DAQFMQ010000007.1	105014..105883	99.885	870	0						
GCA_032721155.1_PDT001939973.1_genomic.fna	Salmonella_enterica	0.5216	105.814 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFMR010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048626 SAMN37820076-rid19822213.denovo.11, whole genome shotgun sequence	12525..12962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFMR010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048626 SAMN37820076-rid19822213.guided.38, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFMR010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048626 SAMN37820076-rid19822213.denovo.16, whole genome shotgun sequence	48415..49057	enterobacteriales	IncFII(S)	100	262 / 262	DAQFMR010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048626 SAMN37820076-rid19822213.denovo.16, whole genome shotgun sequence	64142..64403																																																avrA	DAQFMR010000004.1	61077..61946	99.885	870	0						
GCA_032721175.1_PDT001939896.1_genomic.fna	Salmonella_enterica	0.521	152.963 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFMS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040629 SAMN37819770-rid19822183.denovo.01, whole genome shotgun sequence	242024..242461	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQFMS010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040629 SAMN37819770-rid19822183.denovo.66, whole genome shotgun sequence	86..916	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQFMS010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040629 SAMN37819770-rid19822183.denovo.66, whole genome shotgun sequence	922..1725	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	DAQFMS010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040629 SAMN37819770-rid19822183.guided.28, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQFMS010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040629 SAMN37819770-rid19822183.guided.65, whole genome shotgun sequence	842..1672	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQFMS010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040629 SAMN37819770-rid19822183.guided.65, whole genome shotgun sequence	33..836	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQFMS010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040629 SAMN37819770-rid19822183.denovo.49, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQFMS010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040629 SAMN37819770-rid19822183.guided.51, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	DAQFMS010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040629 SAMN37819770-rid19822183.denovo.44, whole genome shotgun sequence	9417..10232	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQFMS010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040629 SAMN37819770-rid19822183.guided.53, whole genome shotgun sequence	3554..4369	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQFMS010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040629 SAMN37819770-rid19822183.denovo.59, whole genome shotgun sequence	947..2146	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQFMS010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040629 SAMN37819770-rid19822183.guided.58, whole genome shotgun sequence	988..2187	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFMS010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040629 SAMN37819770-rid19822183.denovo.31, whole genome shotgun sequence	32997..33639	enterobacteriales	IncFII(S)	100	262 / 262	DAQFMS010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040629 SAMN37819770-rid19822183.denovo.45, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	95.76	377 / 377	DAQFMS010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040629 SAMN37819770-rid19822183.denovo.46, whole genome shotgun sequence	845..1221																																									avrA	DAQFMS010000005.1	140720..141589	99.54	870	0						
GCA_032721615.1_PDT001927001.1_genomic.fna	Salmonella_enterica	0.5198	466.284 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWDW010000001.1 Salmonella enterica strain PNUSAS390634 SAMN37805567-rid19704563.denovo.01, whole genome shotgun sequence	287524..287961	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWDW010000024.1 Salmonella enterica strain PNUSAS390634 SAMN37805567-rid19704563.guided.17, whole genome shotgun sequence	26059..26496	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNWDW010000018.1 Salmonella enterica strain PNUSAS390634 SAMN37805567-rid19704563.denovo.21, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNWDW010000012.1 Salmonella enterica strain PNUSAS390634 SAMN37805567-rid19704563.denovo.12, whole genome shotgun sequence	11193..11726		enterobacteriales	IncX1	98.4	374 / 374	ABNWDW010000015.1 Salmonella enterica strain PNUSAS390634 SAMN37805567-rid19704563.denovo.15, whole genome shotgun sequence	6956..7329																																									avrA	ABNWDW010000008.1	150695..151565	99.196	871	0						
GCA_032721635.1_PDT001926991.1_genomic.fna	Salmonella_enterica	0.5211	245.188 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWDV010000001.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325660 SAMN37805550-rid19704553.denovo.01, whole genome shotgun sequence	772254..772691	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWDV010000043.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325660 SAMN37805550-rid19704553.guided.26, whole genome shotgun sequence	8849..9286	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWDV010000002.1	581281..582150	99.195	870	0						
GCA_032721655.1_PDT001926926.1_genomic.fna	Salmonella_enterica	0.5223	181.59 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWDY010000001.1 Salmonella enterica strain PNUSAS390646 SAMN37805483-rid19704543.denovo.01, whole genome shotgun sequence	622355..622792	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWDY010000049.1 Salmonella enterica strain PNUSAS390646 SAMN37805483-rid19704543.guided.35, whole genome shotgun sequence	4081..4518	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNWDY010000020.1 Salmonella enterica strain PNUSAS390646 SAMN37805483-rid19704543.denovo.20, whole genome shotgun sequence	73542..73683																																																						avrA	ABNWDY010000002.1	39353..40222	99.655	870	0						
GCA_032721695.1_PDT001926916.1_genomic.fna	Salmonella_enterica	0.5225	191.362 KB	8	aroC_136,dnaN_133,hemD_111,hisD_33,purE_122,sucA_226,thrA_95	Unknown	16:l,w:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_136	dnaN	100	100	dnaN_133	hemD	100	100	hemD_111	hisD	100	100	hisD_33	purE	100	100	purE_122	sucA	100	100	sucA_226	thrA	100	100	thrA_95	16	l,w	1,6	Salmonella enterica subspecies enterica (subspecies I)	Westeinde		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWDZ010000001.1 Salmonella enterica strain PNUSAS390584 SAMN37805473-rid19704533.denovo.01, whole genome shotgun sequence	153323..153760	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWDZ010000060.1 Salmonella enterica strain PNUSAS390584 SAMN37805473-rid19704533.guided.40, whole genome shotgun sequence	3880..4317	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWDZ010000006.1	97660..98529	99.31	870	0						
GCA_032721715.1_PDT001926914.1_genomic.fna	Salmonella_enterica	0.5219	91.043 KB	17	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWEA010000007.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325600 SAMN37805475-rid19704523.denovo.007, whole genome shotgun sequence	15403..15840	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWEA010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325600 SAMN37805475-rid19704523.denovo.047, whole genome shotgun sequence	23570..24406	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNWEA010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325600 SAMN37805475-rid19704523.denovo.047, whole genome shotgun sequence	22767..23570	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNWEA010000099.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325600 SAMN37805475-rid19704523.guided.053, whole genome shotgun sequence	23611..24447	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNWEA010000099.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325600 SAMN37805475-rid19704523.guided.053, whole genome shotgun sequence	22808..23611	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNWEA010000100.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325600 SAMN37805475-rid19704523.guided.068, whole genome shotgun sequence	14172..14609	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	ABNWEA010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325600 SAMN37805475-rid19704523.denovo.047, whole genome shotgun sequence	27542..28755	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNWEA010000103.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325600 SAMN37805475-rid19704523.guided.083, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNWEA010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325600 SAMN37805475-rid19704523.denovo.047, whole genome shotgun sequence	21891..22706	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNWEA010000099.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325600 SAMN37805475-rid19704523.guided.053, whole genome shotgun sequence	21932..22747	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNWEA010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325600 SAMN37805475-rid19704523.denovo.047, whole genome shotgun sequence	25667..26941	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNWEA010000099.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325600 SAMN37805475-rid19704523.guided.053, whole genome shotgun sequence	25708..26982	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncC	100	417 / 417	ABNWEA010000063.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325600 SAMN37805475-rid19704523.denovo.064, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNWEA010000029.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325600 SAMN37805475-rid19704523.denovo.029, whole genome shotgun sequence	16913..17172		enterobacteriales	IncX1	98.66	374 / 374	ABNWEA010000029.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325600 SAMN37805475-rid19704523.denovo.029, whole genome shotgun sequence	52767..53140																																									avrA	ABNWEA010000002.1	147919..148787	99.54	870	0						
GCA_032721735.1_PDT001926883.1_genomic.fna	Salmonella_enterica	0.5196	366.967 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pXuzhou21	aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWEB010000001.1 Salmonella enterica strain PNUSAS390449 SAMN37805393-rid19701223.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWEB010000052.1 Salmonella enterica strain PNUSAS390449 SAMN37805393-rid19701223.guided.11, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pXuzhou21	91.78	718 / 720	ABNWEB010000021.1 Salmonella enterica strain PNUSAS390449 SAMN37805393-rid19701223.denovo.23, whole genome shotgun sequence	29875..30592																																																						avrA	ABNWEB010000012.1	95049..95919	99.196	871	0						
GCA_032721755.1_PDT001926871.1_genomic.fna	Salmonella_enterica	0.5189	333.185 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aadA1,aadA1,aac(6')-Iaa,aph(3')-Ia,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	3	IncFIB(pN55391),IncX4,pKPC-CAV1320	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWEE010000001.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWEE010000012.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.denovo.12, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWEE010000012.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.denovo.12, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNWEE010000036.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.denovo.43, whole genome shotgun sequence	92..907	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	aadA1	99.75	792/792	ABNWEE010000043.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.guided.17, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWEE010000043.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.guided.17, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNWEE010000044.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.guided.18, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNWEE010000047.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.guided.42, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	sul1	100	840/840	ABNWEE010000012.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.denovo.12, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWEE010000043.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.guided.17, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNWEE010000012.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.denovo.12, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWEE010000043.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.guided.17, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNWEE010000031.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.denovo.35, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNWEE010000046.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.guided.36, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNWEE010000027.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.denovo.31, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX4	100	374 / 374	ABNWEE010000025.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.denovo.29, whole genome shotgun sequence	11539..11912		enterobacteriales	pKPC-CAV1320	94.9	823 / 864	ABNWEE010000034.1 Salmonella enterica strain PNUSAS390466 SAMN37805395-rid19701193.denovo.39, whole genome shotgun sequence	813..1635																																									avrA	ABNWEE010000003.1	149828..150697	99.655	870	0						
GCA_032721775.1_PDT001926875.1_genomic.fna	Salmonella_enterica	0.5207	455.616 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWEC010000005.1 Salmonella enterica strain PNUSAS390459 SAMN37805380-rid19699953.denovo.05, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWEC010000027.1 Salmonella enterica strain PNUSAS390459 SAMN37805380-rid19699953.guided.17, whole genome shotgun sequence	23800..24237	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWEC010000016.1 Salmonella enterica strain PNUSAS390459 SAMN37805380-rid19699953.denovo.18, whole genome shotgun sequence	48657..49299	enterobacteriales	IncFII(S)	100	262 / 262	ABNWEC010000016.1 Salmonella enterica strain PNUSAS390459 SAMN37805380-rid19699953.denovo.18, whole genome shotgun sequence	4404..4665																																																avrA	ABNWEC010000001.1	584926..585795	99.54	870	0						
GCA_032721795.1_PDT001926850.1_genomic.fna	Salmonella_enterica	0.5211	694.781 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWED010000001.1 Salmonella enterica strain PNUSAS390502 SAMN37805334-rid19698783.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWED010000026.1 Salmonella enterica strain PNUSAS390502 SAMN37805334-rid19698783.guided.16, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWED010000015.1 Salmonella enterica strain PNUSAS390502 SAMN37805334-rid19698783.denovo.18, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNWED010000016.1 Salmonella enterica strain PNUSAS390502 SAMN37805334-rid19698783.denovo.19, whole genome shotgun sequence	3415..3676																																																avrA	ABNWED010000003.1	553193..554062	99.54	870	0						
GCA_032721815.1_PDT001926839.1_genomic.fna	Salmonella_enterica	0.5211	489.681 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWEF010000001.1 Salmonella enterica strain PNUSAS390520 SAMN37805313-rid19704513.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWEF010000028.1 Salmonella enterica strain PNUSAS390520 SAMN37805313-rid19704513.guided.17, whole genome shotgun sequence	8806..9243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWEF010000019.1 Salmonella enterica strain PNUSAS390520 SAMN37805313-rid19704513.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNWEF010000016.1 Salmonella enterica strain PNUSAS390520 SAMN37805313-rid19704513.denovo.16, whole genome shotgun sequence	3859..4120																																																avrA	ABNWEF010000002.1	552621..553490	99.54	870	0						
GCA_032721835.1_PDT001926829.1_genomic.fna	Salmonella_enterica	0.5213	695.774 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWEG010000001.1 Salmonella enterica strain PNUSAS390513 SAMN37805306-rid19702563.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWEG010000021.1 Salmonella enterica strain PNUSAS390513 SAMN37805306-rid19702563.guided.14, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032722035.1_PDT001940334.1_genomic.fna	Salmonella_enterica	0.5221	93.803 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_1113,thrA_2	7910	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_1113	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFNY010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045906 SAMN37819920-rid19822333.denovo.002, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFNY010000107.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045906 SAMN37819920-rid19822333.guided.032, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFNY010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045906 SAMN37819920-rid19822333.denovo.017, whole genome shotgun sequence	9292..9934	enterobacteriales	IncFII(S)	100	262 / 262	DAQFNY010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045906 SAMN37819920-rid19822333.denovo.017, whole genome shotgun sequence	25019..25280																																																avrA	DAQFNY010000006.1	108495..109364	99.885	870	0						
GCA_032722055.1_PDT001940249.1_genomic.fna	Salmonella_enterica	0.5223	165.573 KB	12	aroC_139,dnaN_174,hemD_68,hisD_132,purE_133,sucA_9,thrA_168	578	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_139	dnaN	100	100	dnaN_174	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_133	sucA	100	100	sucA_9	thrA	100	100	thrA_168	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQFNX010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00030935 SAMN37819708-rid19823683.denovo.05, whole genome shotgun sequence	52495..52932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQFNX010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00030935 SAMN37819708-rid19823683.guided.51, whole genome shotgun sequence	2649..3086	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFNX010000014.1	138900..139769	99.195	870	0						
GCA_032722075.1_PDT001940247.1_genomic.fna	Salmonella_enterica	0.522	201.609 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFNZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00031061 SAMN37819710-rid19825113.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFNZ010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00031061 SAMN37819710-rid19825113.guided.15, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFNZ010000004.1	149594..150463	99.655	870	0						
GCA_032722095.1_PDT001940020.1_genomic.fna	Salmonella_enterica	0.5228	82.606 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFOB010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00045594 SAMN37819860-rid19825063.denovo.004, whole genome shotgun sequence	89196..89633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFOB010000112.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00045594 SAMN37819860-rid19825063.guided.073, whole genome shotgun sequence	10143..10580	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFOB010000008.1	39538..40407	99.655	870	0						
GCA_032722555.1_PDT001790323.1_genomic.fna	Salmonella_enterica	0.5212	207.701 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWEK010000002.1 Salmonella enterica strain PNUSAS358324 SAMN35983120-rid18555083.denovo.02, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWEK010000050.1 Salmonella enterica strain PNUSAS358324 SAMN35983120-rid18555083.guided.38, whole genome shotgun sequence	3357..3794	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWEK010000006.1	154652..155520	99.77	870	0						
GCA_032722595.1_PDT001790322.1_genomic.fna	Salmonella_enterica	0.5213	696.388 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWEL010000001.1 Salmonella enterica strain PNUSAS358327 SAMN35983093-rid18555073.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWEL010000026.1 Salmonella enterica strain PNUSAS358327 SAMN35983093-rid18555073.guided.19, whole genome shotgun sequence	8804..9241	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWEL010000017.1 Salmonella enterica strain PNUSAS358327 SAMN35983093-rid18555073.denovo.18, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNWEL010000018.1 Salmonella enterica strain PNUSAS358327 SAMN35983093-rid18555073.denovo.20, whole genome shotgun sequence	3395..3656																																																avrA	ABNWEL010000002.1	553636..554505	99.54	870	0						
GCA_032722615.1_PDT001790321.1_genomic.fna	Salmonella_enterica	0.5213	620.497 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWEM010000003.1 Salmonella enterica strain PNUSAS358313 SAMN35983117-rid18555063.denovo.03, whole genome shotgun sequence	522372..522809	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWEM010000022.1 Salmonella enterica strain PNUSAS358313 SAMN35983117-rid18555063.guided.17, whole genome shotgun sequence	822..1259	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWEM010000002.1	559502..560371	99.425	870	0						
GCA_032722635.1_PDT001790319.1_genomic.fna	Salmonella_enterica	0.5204	180.893 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,cmlA1,cmlA1,sul2,sul2,tet(M),tet(B),tet(M),tet(B),dfrA12,dfrA12	0		5	Col(pHAD28),Col(pHAD28),Col440II,IncFIB(AP001918),IncFIC(FII),IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWEP010000001.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.01, whole genome shotgun sequence	517872..518309	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNWEP010000036.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.37, whole genome shotgun sequence	7095..7886	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNWEP010000036.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.37, whole genome shotgun sequence	4690..5481	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNWEP010000044.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.50, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(6)-Id	100	837/837	ABNWEP010000052.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.61, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNWEP010000052.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.61, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNWEP010000062.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.guided.39, whole genome shotgun sequence	15620..16057	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNWEP010000063.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.guided.45, whole genome shotgun sequence	6042..6833	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNWEP010000065.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.guided.47, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNWEP010000067.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.guided.55, whole genome shotgun sequence	762..1577	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(6)-Id	100	837/837	ABNWEP010000069.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.guided.60, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNWEP010000069.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.guided.60, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNWEP010000051.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.59, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNWEP010000068.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.guided.58, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABNWEP010000036.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.37, whole genome shotgun sequence	5574..6833	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNWEP010000063.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.guided.45, whole genome shotgun sequence	7095..8354	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNWEP010000065.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.guided.47, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	sul2	100	816/816	ABNWEP010000070.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.guided.64, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNWEP010000071.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.guided.65, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(M)	96.15	1920/1920	ABNWEP010000036.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.37, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNWEP010000039.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.41, whole genome shotgun sequence	7275..8480	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNWEP010000065.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.guided.47, whole genome shotgun sequence	4527..6446	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNWEP010000066.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.guided.49, whole genome shotgun sequence	4114..5319	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABNWEP010000036.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.37, whole genome shotgun sequence	8294..8791	Trimethoprim	AM040708	dfrA12	100	498/498	ABNWEP010000063.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.guided.45, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																													enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNWEP010000043.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.48, whole genome shotgun sequence	1326..1445	enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNWEP010000047.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.53, whole genome shotgun sequence	846..974		enterobacteriales	Col440II	97.52	282 / 282	ABNWEP010000047.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.53, whole genome shotgun sequence	1551..1832		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNWEP010000045.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.51, whole genome shotgun sequence	2058..2739		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNWEP010000028.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.28, whole genome shotgun sequence	55736..56232		enterobacteriales	IncY	99.74	765 / 765	ABNWEP010000018.1 Salmonella enterica strain PNUSAS358325 SAMN35983118-rid18555043.denovo.18, whole genome shotgun sequence	38912..39676																				avrA	ABNWEP010000002.1	93863..94732	99.885	870	0						
GCA_032722655.1_PDT001790320.1_genomic.fna	Salmonella_enterica	0.5214	405.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWEN010000001.1 Salmonella enterica strain PNUSAS358329 SAMN35983114-rid18555053.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWEN010000031.1 Salmonella enterica strain PNUSAS358329 SAMN35983114-rid18555053.guided.26, whole genome shotgun sequence	909..1346	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWEN010000019.1 Salmonella enterica strain PNUSAS358329 SAMN35983114-rid18555053.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNWEN010000020.1 Salmonella enterica strain PNUSAS358329 SAMN35983114-rid18555053.denovo.21, whole genome shotgun sequence	3406..3667																																																avrA	ABNWEN010000002.1	553636..554505	99.54	870	0						
GCA_032722675.1_PDT001790317.1_genomic.fna	Salmonella_enterica	0.5221	505.032 KB	4	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWEQ010000003.1 Salmonella enterica strain PNUSAS358321 SAMN35983116-rid18555023.denovo.03, whole genome shotgun sequence	258069..258506	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWEQ010000025.1 Salmonella enterica strain PNUSAS358321 SAMN35983116-rid18555023.guided.20, whole genome shotgun sequence	3710..4147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWEQ010000002.1	99485..100354	99.77	870	0						
GCA_032722695.1_PDT001790318.1_genomic.fna	Salmonella_enterica	0.5203	478.5 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWEO010000001.1 Salmonella enterica strain PNUSAS358317 SAMN35983094-rid18555033.denovo.01, whole genome shotgun sequence	774554..774991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWEO010000027.1 Salmonella enterica strain PNUSAS358317 SAMN35983094-rid18555033.guided.18, whole genome shotgun sequence	21925..22362	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWEO010000019.1 Salmonella enterica strain PNUSAS358317 SAMN35983094-rid18555033.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNWEO010000021.1 Salmonella enterica strain PNUSAS358317 SAMN35983094-rid18555033.denovo.23, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.13	374 / 377	ABNWEO010000014.1 Salmonella enterica strain PNUSAS358317 SAMN35983094-rid18555033.denovo.14, whole genome shotgun sequence	31782..32155																																									avrA	ABNWEO010000002.1	553470..554339	99.54	870	0						
GCA_032722715.1_PDT001790316.1_genomic.fna	Salmonella_enterica	0.5225	349.857 KB	6	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWER010000001.1 Salmonella enterica strain PNUSAS358326 SAMN35983115-rid18555013.denovo.01, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWER010000032.1 Salmonella enterica strain PNUSAS358326 SAMN35983115-rid18555013.guided.24, whole genome shotgun sequence	5125..5562	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNWER010000025.1 Salmonella enterica strain PNUSAS358326 SAMN35983115-rid18555013.denovo.27, whole genome shotgun sequence	557..687	enterobacteriales	ColRNAI	90.83	109 / 130	ABNWER010000023.1 Salmonella enterica strain PNUSAS358326 SAMN35983115-rid18555013.denovo.25, whole genome shotgun sequence	1016..1124																																																avrA	ABNWER010000012.1	36961..37830	99.425	870	0						
GCA_032722735.1_PDT001790315.1_genomic.fna	Salmonella_enterica	0.5214	696.962 KB	3	aroC_13,dnaN_11,hemD_315,hisD_15,purE_12,sucA_15,thrA_4	1675	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_315	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWES010000001.1 Salmonella enterica strain PNUSAS358319 SAMN35983119-rid18554063.denovo.01, whole genome shotgun sequence	642440..642877	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWES010000023.1 Salmonella enterica strain PNUSAS358319 SAMN35983119-rid18554063.guided.17, whole genome shotgun sequence	8618..9055	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032722755.1_PDT001790314.1_genomic.fna	Salmonella_enterica	0.521	405.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWET010000001.1 Salmonella enterica strain PNUSAS358332 SAMN35983068-rid18555003.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWET010000028.1 Salmonella enterica strain PNUSAS358332 SAMN35983068-rid18555003.guided.17, whole genome shotgun sequence	8400..8837	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWET010000018.1 Salmonella enterica strain PNUSAS358332 SAMN35983068-rid18555003.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNWET010000019.1 Salmonella enterica strain PNUSAS358332 SAMN35983068-rid18555003.denovo.22, whole genome shotgun sequence	3402..3663																																																avrA	ABNWET010000002.1	553642..554511	99.54	870	0						
GCA_032722775.1_PDT001790312.1_genomic.fna	Salmonella_enterica	0.5211	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWEV010000001.1 Salmonella enterica strain PNUSAS358330 SAMN35983073-rid18554983.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWEV010000027.1 Salmonella enterica strain PNUSAS358330 SAMN35983073-rid18554983.guided.19, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWEV010000018.1 Salmonella enterica strain PNUSAS358330 SAMN35983073-rid18554983.denovo.21, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNWEV010000019.1 Salmonella enterica strain PNUSAS358330 SAMN35983073-rid18554983.denovo.22, whole genome shotgun sequence	3402..3663																																																avrA	ABNWEV010000002.1	553636..554505	99.54	870	0						
GCA_032722795.1_PDT001790311.1_genomic.fna	Salmonella_enterica	0.5205	378.46 KB	6	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWEX010000001.1 Salmonella enterica strain PNUSAS358316 SAMN35983078-rid18554973.denovo.01, whole genome shotgun sequence	454055..454492	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWEX010000057.1 Salmonella enterica strain PNUSAS358316 SAMN35983078-rid18554973.guided.33, whole genome shotgun sequence	3216..3653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNWEX010000023.1 Salmonella enterica strain PNUSAS358316 SAMN35983078-rid18554973.denovo.23, whole genome shotgun sequence	11456..12098																																																						avrA	ABNWEX010000005.1	93871..94739	99.31	870	0						
GCA_032722815.1_PDT001790313.1_genomic.fna	Salmonella_enterica	0.5212	269.597 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWEU010000001.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWEU010000024.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.denovo.25, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWEU010000024.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.denovo.25, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNWEU010000036.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.denovo.44, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNWEU010000036.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.denovo.44, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNWEU010000054.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.guided.26, whole genome shotgun sequence	10651..11088	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWEU010000056.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.guided.33, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWEU010000056.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.guided.33, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNWEU010000060.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.guided.43, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNWEU010000060.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.guided.43, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNWEU010000038.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.denovo.47, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNWEU010000061.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.guided.45, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNWEU010000034.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.denovo.38, whole genome shotgun sequence	3320..4533	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNWEU010000057.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.guided.39, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNWEU010000058.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.guided.40, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNWEU010000024.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.denovo.25, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWEU010000056.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.guided.33, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNWEU010000024.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.denovo.25, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWEU010000056.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.guided.33, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNWEU010000032.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.denovo.36, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNWEU010000059.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.guided.41, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																					gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNWEU010000028.1 Salmonella enterica strain PNUSAS358318 SAMN35983074-rid18554993.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABNWEU010000003.1	95066..95935	99.655	870	0						
GCA_032722835.1_PDT001790309.1_genomic.fna	Salmonella_enterica	0.5201	407.373 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNWEZ010000001.1 Salmonella enterica strain PNUSAS358315 SAMN35983075-rid18554953.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNWEZ010000044.1 Salmonella enterica strain PNUSAS358315 SAMN35983075-rid18554953.guided.25, whole genome shotgun sequence	3812..4249	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNWEZ010000026.1 Salmonella enterica strain PNUSAS358315 SAMN35983075-rid18554953.denovo.29, whole genome shotgun sequence	239..369																																																						avrA	ABNWEZ010000005.1	93872..94741	99.425	870	0						
GCA_032722855.1_PDT001790310.1_genomic.fna	Salmonella_enterica	0.521	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	4	Col156,ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWEW010000001.1 Salmonella enterica strain PNUSAS358328 SAMN35983077-rid18554963.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWEW010000032.1 Salmonella enterica strain PNUSAS358328 SAMN35983077-rid18554963.guided.28, whole genome shotgun sequence	765..1202	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col156	97.37	152 / 154	ABNWEW010000025.1 Salmonella enterica strain PNUSAS358328 SAMN35983077-rid18554963.denovo.26, whole genome shotgun sequence	643..794	enterobacteriales	ColpVC	96.89	193 / 193	ABNWEW010000027.1 Salmonella enterica strain PNUSAS358328 SAMN35983077-rid18554963.denovo.30, whole genome shotgun sequence	1653..1845		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWEW010000020.1 Salmonella enterica strain PNUSAS358328 SAMN35983077-rid18554963.denovo.21, whole genome shotgun sequence	6820..7462		enterobacteriales	IncFII(S)	100	262 / 262	ABNWEW010000021.1 Salmonella enterica strain PNUSAS358328 SAMN35983077-rid18554963.denovo.22, whole genome shotgun sequence	3395..3656																																		avrA	ABNWEW010000002.1	553574..554443	99.54	870	0						
GCA_032722875.1_PDT001790306.1_genomic.fna	Salmonella_enterica	0.521	299.113 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWFB010000011.1 Salmonella enterica strain PNUSAS358322 SAMN35983069-rid18554923.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWFB010000052.1 Salmonella enterica strain PNUSAS358322 SAMN35983069-rid18554923.guided.37, whole genome shotgun sequence	1014..1451	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNWFB010000020.1 Salmonella enterica strain PNUSAS358322 SAMN35983069-rid18554923.denovo.20, whole genome shotgun sequence	34958..35491																																																						avrA	ABNWFB010000001.1	187683..188549	98.966	870	0						
GCA_032722895.1_PDT001790307.1_genomic.fna	Salmonella_enterica	0.5214	489.495 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWFA010000001.1 Salmonella enterica strain PNUSAS358314 SAMN35983076-rid18554933.denovo.01, whole genome shotgun sequence	774365..774802	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWFA010000023.1 Salmonella enterica strain PNUSAS358314 SAMN35983076-rid18554933.guided.16, whole genome shotgun sequence	30187..30624	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWFA010000018.1 Salmonella enterica strain PNUSAS358314 SAMN35983076-rid18554933.denovo.20, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNWFA010000015.1 Salmonella enterica strain PNUSAS358314 SAMN35983076-rid18554933.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNWFA010000002.1	553305..554174	99.54	870	0						
GCA_032722915.1_PDT001790308.1_genomic.fna	Salmonella_enterica	0.5223	333.748 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWEY010000001.1 Salmonella enterica strain PNUSAS358320 SAMN35983071-rid18554943.denovo.01, whole genome shotgun sequence	460198..460635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWEY010000036.1 Salmonella enterica strain PNUSAS358320 SAMN35983071-rid18554943.guided.30, whole genome shotgun sequence	622..1059	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWEY010000002.1	149829..150698	99.655	870	0						
GCA_032722935.1_PDT001790305.1_genomic.fna	Salmonella_enterica	0.5225	288.085 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNWFC010000001.1 Salmonella enterica strain PNUSAS358331 SAMN35983070-rid18554053.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNWFC010000039.1 Salmonella enterica strain PNUSAS358331 SAMN35983070-rid18554053.guided.24, whole genome shotgun sequence	1213..1650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNWFC010000026.1 Salmonella enterica strain PNUSAS358331 SAMN35983070-rid18554053.denovo.29, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNWFC010000028.1 Salmonella enterica strain PNUSAS358331 SAMN35983070-rid18554053.denovo.31, whole genome shotgun sequence	2528..2639																																																avrA	ABNWFC010000007.1	94166..95034	99.425	870	0						
GCA_032722955.1_PDT001790304.1_genomic.fna	Salmonella_enterica	0.5213	321.503 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWFD010000001.1 Salmonella enterica strain PNUSAS358323 SAMN35983072-rid18554913.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWFD010000031.1 Salmonella enterica strain PNUSAS358323 SAMN35983072-rid18554913.guided.22, whole genome shotgun sequence	5999..6436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWFD010000022.1 Salmonella enterica strain PNUSAS358323 SAMN35983072-rid18554913.denovo.23, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNWFD010000024.1 Salmonella enterica strain PNUSAS358323 SAMN35983072-rid18554913.denovo.26, whole genome shotgun sequence	3404..3665																																																avrA	ABNWFD010000002.1	175196..176065	99.54	870	0						
GCA_032723055.1_PDT001940454.1_genomic.fna	Salmonella_enterica	0.5204	309.05 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWFH010000001.1 Salmonella enterica strain PNUSAS390830 SAMN37831065-rid19835913.denovo.01, whole genome shotgun sequence	486073..486510	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.16	381/438	ABNWFH010000040.1 Salmonella enterica strain PNUSAS390830 SAMN37831065-rid19835913.guided.34, whole genome shotgun sequence	1..381	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNWFH010000004.1 Salmonella enterica strain PNUSAS390830 SAMN37831065-rid19835913.denovo.04, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNWFH010000041.1 Salmonella enterica strain PNUSAS390830 SAMN37831065-rid19835913.guided.35, whole genome shotgun sequence	1566..1988	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWFH010000002.1	169368..170237	99.195	870	0						
GCA_032723075.1_PDT001940411.1_genomic.fna	Salmonella_enterica	0.5217	96.262 KB	15	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFOV010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028856 SAMN37819678-rid19822343.denovo.005, whole genome shotgun sequence	15449..15886	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFOV010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028856 SAMN37819678-rid19822343.guided.025, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFOV010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028856 SAMN37819678-rid19822343.denovo.079, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFOV010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028856 SAMN37819678-rid19822343.denovo.052, whole genome shotgun sequence	18067..18709		enterobacteriales	IncFII(S)	100	262 / 262	DAQFOV010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028856 SAMN37819678-rid19822343.denovo.052, whole genome shotgun sequence	3423..3684																																									avrA	DAQFOV010000003.1	115320..116189	99.54	870	0						
GCA_032723095.1_PDT001940401.1_genomic.fna	Salmonella_enterica	0.5202	246.164 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaTEM-1B,blaTEM-1B,sul3,sul3	1	gyrA_p.D87N	3	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFOW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021696 SAMN37819526-rid19825183.denovo.01, whole genome shotgun sequence	293252..293689	Amikacin, Tobramycin	NC_003197	aadA1	99.87	792/792	DAQFOW010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021696 SAMN37819526-rid19825183.denovo.13, whole genome shotgun sequence	28116..28907	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	DAQFOW010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021696 SAMN37819526-rid19825183.denovo.13, whole genome shotgun sequence	28116..28907	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	96.35	438/438	DAQFOW010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021696 SAMN37819526-rid19825183.guided.19, whole genome shotgun sequence	33551..33988	Amikacin, Tobramycin	NC_003197	aadA1	99.87	792/792	DAQFOW010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021696 SAMN37819526-rid19825183.guided.32, whole genome shotgun sequence	18829..19620	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	DAQFOW010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021696 SAMN37819526-rid19825183.guided.32, whole genome shotgun sequence	18829..19620	Spectinomycin, Streptomycin	JQ414041	blaTEM-1B	100	861/861	DAQFOW010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021696 SAMN37819526-rid19825183.denovo.13, whole genome shotgun sequence	35625..36485	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQFOW010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021696 SAMN37819526-rid19825183.guided.32, whole genome shotgun sequence	11251..12111	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul3	100	792/792	DAQFOW010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021696 SAMN37819526-rid19825183.denovo.13, whole genome shotgun sequence	30589..31380	Sulfamethoxazole	AJ459418	sul3	100	792/792	DAQFOW010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021696 SAMN37819526-rid19825183.guided.32, whole genome shotgun sequence	16356..17147	Sulfamethoxazole	AJ459418																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFOW010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021696 SAMN37819526-rid19825183.denovo.24, whole genome shotgun sequence	40537..41179	enterobacteriales	IncFII(S)	100	262 / 262	DAQFOW010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021696 SAMN37819526-rid19825183.denovo.40, whole genome shotgun sequence	3423..3684		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQFOW010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021696 SAMN37819526-rid19825183.denovo.13, whole genome shotgun sequence	44426..44567		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQFOW010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021696 SAMN37819526-rid19825183.guided.32, whole genome shotgun sequence	3169..3310																																		avrA	DAQFOW010000009.1	140720..141589	99.54	870	0						
GCA_032723115.1_PDT001940391.1_genomic.fna	Salmonella_enterica	0.5223	165.859 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFOX010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041124 SAMN37819783-rid19825173.denovo.22, whole genome shotgun sequence	62427..62864	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFOX010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041124 SAMN37819783-rid19825173.guided.32, whole genome shotgun sequence	34164..34601	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFOX010000006.1	149572..150441	99.655	870	0						
GCA_032723135.1_PDT001940369.1_genomic.fna	Salmonella_enterica	0.5208	80.268 KB	20	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col(pHAD28),IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFOY010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00043647 SAMN37819803-rid19825143.denovo.027, whole genome shotgun sequence	14076..14513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFOY010000117.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00043647 SAMN37819803-rid19825143.guided.032, whole genome shotgun sequence	9830..10267	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQFOY010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00043647 SAMN37819803-rid19825143.denovo.101, whole genome shotgun sequence	831..961	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFOY010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00043647 SAMN37819803-rid19825143.denovo.043, whole genome shotgun sequence	36659..37301		enterobacteriales	IncFII(S)	100	262 / 262	DAQFOY010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00043647 SAMN37819803-rid19825143.denovo.084, whole genome shotgun sequence	3420..3681		enterobacteriales	IncX1	95.76	377 / 377	DAQFOY010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00043647 SAMN37819803-rid19825143.denovo.085, whole genome shotgun sequence	4749..5125																																		avrA	DAQFOY010000019.1	81622..82491	99.54	870	0						
GCA_032723155.1_PDT001940344.1_genomic.fna	Salmonella_enterica	0.5223	48.193 KB	35	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFPA010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045894 SAMN37819911-rid19823733.denovo.075, whole genome shotgun sequence	11335..11772	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFPA010000181.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045894 SAMN37819911-rid19823733.guided.002, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFPA010000121.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045894 SAMN37819911-rid19823733.denovo.124, whole genome shotgun sequence	9189..9831	enterobacteriales	IncFII(S)	100	262 / 262	DAQFPA010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045894 SAMN37819911-rid19823733.denovo.043, whole genome shotgun sequence	29398..29659																																																avrA	DAQFPA010000005.1	94139..95008	99.885	870	0						
GCA_032723175.1_PDT001940324.1_genomic.fna	Salmonella_enterica	0.5214	60.064 KB	28	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI(Gamma),IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFPB010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047086 SAMN37820016-rid19823723.denovo.021, whole genome shotgun sequence	12496..12933	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFPB010000164.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047086 SAMN37820016-rid19823723.guided.006, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFPB010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047086 SAMN37820016-rid19823723.denovo.008, whole genome shotgun sequence	36058..36700	enterobacteriales	IncFII(S)	100	262 / 262	DAQFPB010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047086 SAMN37820016-rid19823723.denovo.008, whole genome shotgun sequence	51785..52046		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFPB010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047086 SAMN37820016-rid19823723.denovo.037, whole genome shotgun sequence	15829..15965		enterobacteriales	IncX4	99.73	374 / 374	DAQFPB010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047086 SAMN37820016-rid19823723.denovo.058, whole genome shotgun sequence	15323..15696																																		avrA	DAQFPB010000013.1	39625..40494	99.885	870	0						
GCA_032723195.1_PDT001940259.1_genomic.fna	Salmonella_enterica	0.5224	185.927 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFOZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00030262 SAMN37819700-rid19823703.denovo.01, whole genome shotgun sequence	316723..317160	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFOZ010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00030262 SAMN37819700-rid19823703.guided.22, whole genome shotgun sequence	42299..42736	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFOZ010000004.1	149646..150515	99.77	870	0						
GCA_032723215.1_PDT001940257.1_genomic.fna	Salmonella_enterica	0.5217	178.647 KB	8	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_12	434	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_12	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQFPC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00030476 SAMN37819702-rid19823693.denovo.01, whole genome shotgun sequence	535952..536389	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQFPC010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00030476 SAMN37819702-rid19823693.guided.15, whole genome shotgun sequence	24883..25320	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFPC010000004.1	140168..141037	99.31	870	0						
GCA_032723235.1_PDT001940172.1_genomic.fna	Salmonella_enterica	0.5221	61.942 KB	25	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFPF010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046431 SAMN37819952-rid19823653.denovo.019, whole genome shotgun sequence	12547..12984	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFPF010000142.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046431 SAMN37819952-rid19823653.guided.057, whole genome shotgun sequence	15547..15984	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFPF010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046431 SAMN37819952-rid19823653.denovo.034, whole genome shotgun sequence	44751..45393	enterobacteriales	IncFII(S)	100	262 / 262	DAQFPF010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046431 SAMN37819952-rid19823653.denovo.034, whole genome shotgun sequence	29405..29666																																																avrA	DAQFPF010000003.1	107930..108799	99.885	870	0						
GCA_032723255.1_PDT001940237.1_genomic.fna	Salmonella_enterica	0.5224	65.865 KB	25	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFPD010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00032459 SAMN37819719-rid19825103.denovo.005, whole genome shotgun sequence	48308..48745	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFPD010000130.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00032459 SAMN37819719-rid19825103.guided.032, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFPD010000004.1	124269..125138	99.655	870	0						
GCA_032723275.1_PDT001940182.1_genomic.fna	Salmonella_enterica	0.522	65.309 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFPE010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046216 SAMN37819943-rid19823663.denovo.004, whole genome shotgun sequence	12502..12939	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFPE010000134.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046216 SAMN37819943-rid19823663.guided.034, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFPE010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046216 SAMN37819943-rid19823663.denovo.015, whole genome shotgun sequence	36059..36701	enterobacteriales	IncFII(S)	100	262 / 262	DAQFPE010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046216 SAMN37819943-rid19823663.denovo.015, whole genome shotgun sequence	51786..52047																																																avrA	DAQFPE010000007.1	108108..108977	99.885	870	0						
GCA_032723295.1_PDT001940095.1_genomic.fna	Salmonella_enterica	0.5212	243.473 KB	7	aroC_454,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	1925	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_454	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFPH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00026795 SAMN37819619-rid19825073.denovo.01, whole genome shotgun sequence	292133..292570	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFPH010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00026795 SAMN37819619-rid19825073.guided.17, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFPH010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00026795 SAMN37819619-rid19825073.denovo.25, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	DAQFPH010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00026795 SAMN37819619-rid19825073.denovo.44, whole genome shotgun sequence	3423..3684																																																avrA	DAQFPH010000011.1	142397..143266	99.54	870	0						
GCA_032723315.1_PDT001940135.1_genomic.fna	Salmonella_enterica	0.5209	406.244 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFPG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00024830 SAMN37819585-rid19822293.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFPG010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00024830 SAMN37819585-rid19822293.guided.17, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFPG010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00024830 SAMN37819585-rid19822293.denovo.22, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	DAQFPG010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00024830 SAMN37819585-rid19822293.denovo.28, whole genome shotgun sequence	3423..3684																																																avrA	DAQFPG010000012.1	60976..61845	99.54	870	0						
GCA_032723335.1_PDT001940030.1_genomic.fna	Salmonella_enterica	0.5209	341.396 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFPK010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045552 SAMN37819851-rid19823623.denovo.02, whole genome shotgun sequence	145229..145666	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFPK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045552 SAMN37819851-rid19823623.guided.21, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFPK010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045552 SAMN37819851-rid19823623.denovo.15, whole genome shotgun sequence	48407..49049	enterobacteriales	IncFII(S)	100	262 / 262	DAQFPK010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045552 SAMN37819851-rid19823623.denovo.15, whole genome shotgun sequence	64134..64395		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFPK010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045552 SAMN37819851-rid19823623.denovo.27, whole genome shotgun sequence	22488..22624																																									avrA	DAQFPK010000005.1	185330..186199	99.885	870	0						
GCA_032723355.1_PDT001940040.1_genomic.fna	Salmonella_enterica	0.5211	123.194 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	Col156,Col156,IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFPJ010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045468 SAMN37819842-rid19822243.denovo.004, whole genome shotgun sequence	83644..84081	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFPJ010000107.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045468 SAMN37819842-rid19822243.guided.024, whole genome shotgun sequence	9823..10260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.16	154 / 154	DAQFPJ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045468 SAMN37819842-rid19822243.denovo.083, whole genome shotgun sequence	483..636	enterobacteriales	Col156	97.95	146 / 154	DAQFPJ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045468 SAMN37819842-rid19822243.denovo.084, whole genome shotgun sequence	1..146		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQFPJ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045468 SAMN37819842-rid19822243.denovo.047, whole genome shotgun sequence	16399..16540																																									avrA	DAQFPJ010000003.1	61077..61946	99.885	870	0						
GCA_032723375.1_PDT001940050.1_genomic.fna	Salmonella_enterica	0.5221	130.289 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFPI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00038032 SAMN37819747-rid19822253.denovo.01, whole genome shotgun sequence	477815..478252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFPI010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00038032 SAMN37819747-rid19822253.guided.13, whole genome shotgun sequence	13824..14261	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFPI010000011.1	124011..124880	99.655	870	0						
GCA_032723395.1_PDT001940018.1_genomic.fna	Salmonella_enterica	0.5225	57.711 KB	29	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFPM010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045597 SAMN37819862-rid19825053.denovo.062, whole genome shotgun sequence	15512..15949	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFPM010000160.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045597 SAMN37819862-rid19825053.guided.075, whole genome shotgun sequence	15486..15923	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFPM010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045597 SAMN37819862-rid19825053.denovo.035, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	DAQFPM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045597 SAMN37819862-rid19825053.denovo.049, whole genome shotgun sequence	29398..29659																																																avrA	DAQFPM010000048.1	39625..40494	99.885	870	0						
GCA_032723415.1_PDT001940008.1_genomic.fna	Salmonella_enterica	0.5201	204.862 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFPN010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022707 SAMN37819553-rid19825043.denovo.03, whole genome shotgun sequence	151203..151640	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFPN010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022707 SAMN37819553-rid19825043.guided.24, whole genome shotgun sequence	31355..31792	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	DAQFPN010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022707 SAMN37819553-rid19825043.denovo.30, whole genome shotgun sequence	5285..6145	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQFPN010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022707 SAMN37819553-rid19825043.denovo.30, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQFPN010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022707 SAMN37819553-rid19825043.denovo.30, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQFPN010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022707 SAMN37819553-rid19825043.denovo.30, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQFPN010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022707 SAMN37819553-rid19825043.denovo.30, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	DAQFPN010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022707 SAMN37819553-rid19825043.guided.48, whole genome shotgun sequence	3945..4805	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQFPN010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022707 SAMN37819553-rid19825043.guided.48, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQFPN010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022707 SAMN37819553-rid19825043.guided.48, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQFPN010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022707 SAMN37819553-rid19825043.guided.48, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQFPN010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022707 SAMN37819553-rid19825043.guided.48, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFPN010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022707 SAMN37819553-rid19825043.denovo.26, whole genome shotgun sequence	40537..41179	enterobacteriales	IncFII(S)	100	262 / 262	DAQFPN010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022707 SAMN37819553-rid19825043.denovo.46, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	98.66	374 / 374	DAQFPN010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022707 SAMN37819553-rid19825043.denovo.30, whole genome shotgun sequence	11911..12284																																									avrA	DAQFPN010000009.1	115392..116261	99.54	870	0						
GCA_032723435.1_PDT001940028.1_genomic.fna	Salmonella_enterica	0.5216	78.524 KB	21	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFPL010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045565 SAMN37819853-rid19822233.denovo.028, whole genome shotgun sequence	12491..12928	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFPL010000116.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045565 SAMN37819853-rid19822233.guided.061, whole genome shotgun sequence	14190..14627	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFPL010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045565 SAMN37819853-rid19822233.denovo.067, whole genome shotgun sequence	9222..9864	enterobacteriales	IncFII(S)	100	262 / 262	DAQFPL010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045565 SAMN37819853-rid19822233.denovo.057, whole genome shotgun sequence	29392..29653		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFPL010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045565 SAMN37819853-rid19822233.denovo.066, whole genome shotgun sequence	8349..8485																																									avrA	DAQFPL010000009.1	108271..109140	99.885	870	0						
GCA_032723455.1_PDT001939943.1_genomic.fna	Salmonella_enterica	0.5214	138.878 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFPP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028198 SAMN37819641-rid19825033.denovo.01, whole genome shotgun sequence	242121..242558	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFPP010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028198 SAMN37819641-rid19825033.guided.23, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFPP010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028198 SAMN37819641-rid19825033.denovo.53, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFPP010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028198 SAMN37819641-rid19825033.denovo.26, whole genome shotgun sequence	40527..41169		enterobacteriales	IncFII(S)	100	262 / 262	DAQFPP010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028198 SAMN37819641-rid19825033.denovo.26, whole genome shotgun sequence	55552..55813																																									avrA	DAQFPP010000006.1	115320..116189	99.54	870	0						
GCA_032723475.1_PDT001939953.1_genomic.fna	Salmonella_enterica	0.5211	113.875 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFPO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048978 SAMN37820094-rid19823603.denovo.001, whole genome shotgun sequence	145237..145674	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFPO010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048978 SAMN37820094-rid19823603.guided.013, whole genome shotgun sequence	42407..42844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFPO010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048978 SAMN37820094-rid19823603.denovo.017, whole genome shotgun sequence	48428..49070	enterobacteriales	IncFII(S)	100	262 / 262	DAQFPO010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048978 SAMN37820094-rid19823603.denovo.017, whole genome shotgun sequence	64155..64416																																																avrA	DAQFPO010000013.1	108195..109064	99.885	870	0						
GCA_032723495.1_PDT001939886.1_genomic.fna	Salmonella_enterica	0.5223	204.89 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFPQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041085 SAMN37819779-rid19823583.denovo.01, whole genome shotgun sequence	477802..478239	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFPQ010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041085 SAMN37819779-rid19823583.guided.17, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFPQ010000004.1	149550..150419	99.77	870	0						
GCA_032723515.1_PDT001939846.1_genomic.fna	Salmonella_enterica	0.5215	123.995 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFPS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046749 SAMN37819988-rid19825003.denovo.01, whole genome shotgun sequence	145462..145899	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFPS010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046749 SAMN37819988-rid19825003.guided.48, whole genome shotgun sequence	9845..10282	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFPS010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046749 SAMN37819988-rid19825003.denovo.68, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQFPS010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046749 SAMN37819988-rid19825003.denovo.15, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	DAQFPS010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046749 SAMN37819988-rid19825003.denovo.15, whole genome shotgun sequence	30407..30668																																									avrA	DAQFPS010000004.1	122843..123712	99.885	870	0						
GCA_032723535.1_PDT001939876.1_genomic.fna	Salmonella_enterica	0.5212	112.676 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFPR010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045716 SAMN37819875-rid19822173.denovo.32, whole genome shotgun sequence	12529..12966	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFPR010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045716 SAMN37819875-rid19822173.guided.19, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFPR010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045716 SAMN37819875-rid19822173.denovo.26, whole genome shotgun sequence	36059..36701	enterobacteriales	IncFII(S)	100	262 / 262	DAQFPR010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045716 SAMN37819875-rid19822173.denovo.26, whole genome shotgun sequence	51786..52047																																																avrA	DAQFPR010000007.1	122911..123780	99.885	870	0						
GCA_032723555.1_PDT001939811.1_genomic.fna	Salmonella_enterica	0.5223	86.193 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFPT010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049099 SAMN37820107-rid19822163.denovo.002, whole genome shotgun sequence	120802..121239	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFPT010000113.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049099 SAMN37820107-rid19822163.guided.055, whole genome shotgun sequence	15438..15875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFPT010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049099 SAMN37820107-rid19822163.denovo.013, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQFPT010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049099 SAMN37820107-rid19822163.denovo.013, whole genome shotgun sequence	60371..60632																																																avrA	DAQFPT010000036.1	39625..40494	99.885	870	0						
GCA_032723575.1_PDT001939801.1_genomic.fna	Salmonella_enterica	0.5213	134.311 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFPU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049249 SAMN37820115-rid19823573.denovo.01, whole genome shotgun sequence	223639..224076	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFPU010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049249 SAMN37820115-rid19823573.guided.12, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFPU010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049249 SAMN37820115-rid19823573.denovo.15, whole genome shotgun sequence	48426..49068	enterobacteriales	IncFII(S)	100	262 / 262	DAQFPU010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049249 SAMN37820115-rid19823573.denovo.15, whole genome shotgun sequence	64153..64414																																																avrA	DAQFPU010000006.1	122899..123768	99.885	870	0						
GCA_032723595.1_PDT001939791.1_genomic.fna	Salmonella_enterica	0.5214	122.364 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFPV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049533 SAMN37820124-rid19822153.denovo.01, whole genome shotgun sequence	206837..207274	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFPV010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049533 SAMN37820124-rid19822153.guided.25, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFPV010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049533 SAMN37820124-rid19822153.denovo.15, whole genome shotgun sequence	48427..49069	enterobacteriales	IncFII(S)	100	262 / 262	DAQFPV010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049533 SAMN37820124-rid19822153.denovo.15, whole genome shotgun sequence	64154..64415																																																avrA	DAQFPV010000004.1	108293..109162	99.885	870	0						
GCA_032723615.1_PDT001939781.1_genomic.fna	Salmonella_enterica	0.5219	198.831 KB	9	aroC_139,dnaN_174,hemD_68,hisD_132,purE_133,sucA_9,thrA_168	578	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_139	dnaN	100	100	dnaN_174	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_133	sucA	100	100	sucA_9	thrA	100	100	thrA_168	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQFPW010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00028614 SAMN37819672-rid19824983.denovo.09, whole genome shotgun sequence	52304..52741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQFPW010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00028614 SAMN37819672-rid19824983.guided.29, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFPW010000003.1	138900..139769	99.195	870	0						
GCA_032723635.1_PDT001939779.1_genomic.fna	Salmonella_enterica	0.5216	82.823 KB	18	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFPX010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028839 SAMN37819674-rid19824973.denovo.011, whole genome shotgun sequence	42775..43212	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFPX010000120.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028839 SAMN37819674-rid19824973.guided.041, whole genome shotgun sequence	15568..16005	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFPX010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028839 SAMN37819674-rid19824973.denovo.087, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFPX010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028839 SAMN37819674-rid19824973.denovo.030, whole genome shotgun sequence	35857..36499		enterobacteriales	IncFII(S)	100	262 / 262	DAQFPX010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028839 SAMN37819674-rid19824973.denovo.030, whole genome shotgun sequence	50882..51143																																									avrA	DAQFPX010000003.1	115305..116174	99.54	870	0						
GCA_032723675.1_PDT001790298.1_genomic.fna	Salmonella_enterica	0.5207	412.897 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWFL010000001.1 Salmonella enterica strain PNUSAS358335 SAMN35982767-rid18781683.denovo.01, whole genome shotgun sequence	643174..643611	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWFL010000017.1 Salmonella enterica strain PNUSAS358335 SAMN35982767-rid18781683.guided.14, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032723715.1_PDT001790296.1_genomic.fna	Salmonella_enterica	0.5217	528.705 KB	4	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWFN010000004.1 Salmonella enterica strain PNUSAS358336 SAMN35982770-rid18554863.denovo.04, whole genome shotgun sequence	348485..348922	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.01	402/438	ABNWFN010000028.1 Salmonella enterica strain PNUSAS358336 SAMN35982770-rid18554863.guided.23, whole genome shotgun sequence	2..403	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032723735.1_PDT001790297.1_genomic.fna	Salmonella_enterica	0.5215	400.669 KB	4	aroC_13,dnaN_127,hemD_506,hisD_113,purE_114,sucA_107,thrA_4	3095	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_506	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWFM010000001.1 Salmonella enterica strain PNUSAS358342 SAMN35982769-rid18554873.denovo.01, whole genome shotgun sequence	498131..498568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWFM010000029.1 Salmonella enterica strain PNUSAS358342 SAMN35982769-rid18554873.guided.19, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWFM010000002.1	140447..141316	99.425	870	0						
GCA_032723755.1_PDT001790295.1_genomic.fna	Salmonella_enterica	0.5194	696.249 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI1-I(Alpha),pSL483	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWFO010000001.1 Salmonella enterica strain PNUSAS358343 SAMN35982772-rid18781673.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWFO010000023.1 Salmonella enterica strain PNUSAS358343 SAMN35982772-rid18781673.guided.19, whole genome shotgun sequence	2021..2458	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNWFO010000010.1 Salmonella enterica strain PNUSAS358343 SAMN35982772-rid18781673.denovo.10, whole genome shotgun sequence	83056..83197	enterobacteriales	pSL483	91.87	996 / 995	ABNWFO010000013.1 Salmonella enterica strain PNUSAS358343 SAMN35982772-rid18781673.denovo.13, whole genome shotgun sequence	16369..17363																																																											
GCA_032723775.1_PDT001790294.1_genomic.fna	Salmonella_enterica	0.5205	673.541 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWFP010000001.1 Salmonella enterica strain PNUSAS358340 SAMN35982766-rid18781663.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWFP010000016.1 Salmonella enterica strain PNUSAS358340 SAMN35982766-rid18781663.guided.14, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032723795.1_PDT001790293.1_genomic.fna	Salmonella_enterica	0.5204	418.418 KB	5	aroC_104,dnaN_100,hemD_54,hisD_78,purE_104,sucA_9,thrA_48	292	8:z4,z24:-	6	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,floR,floR,sul2,sul2,sul2,tet(A),tet(A)	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_104	dnaN	100	100	dnaN_100	hemD	100	100	hemD_54	hisD	100	100	hisD_78	purE	100	100	purE_104	sucA	100	100	sucA_9	thrA	100	100	thrA_48	8	z4,z24	-	Salmonella enterica subspecies enterica (subspecies I)	Albany or Duesseldorf	The predicted serotypes share the same general formula: 8:z4,z24:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWFQ010000001.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.denovo.01, whole genome shotgun sequence	784284..784721	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	99.88	804/804	ABNWFQ010000021.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.denovo.28, whole genome shotgun sequence	2..805	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWFQ010000021.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.denovo.28, whole genome shotgun sequence	2..805	Streptomycin	AF313472	aac(6')-Iaa	98.63	438/438	ABNWFQ010000031.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.guided.17, whole genome shotgun sequence	12503..12940	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	837/837	ABNWFQ010000035.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.guided.24, whole genome shotgun sequence	2049..2885	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNWFQ010000035.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.guided.24, whole genome shotgun sequence	1246..2049	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWFQ010000035.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.guided.24, whole genome shotgun sequence	1246..2049	Streptomycin	AF313472	aph(6)-Id	100	837/837	ABNWFQ010000036.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.guided.25, whole genome shotgun sequence	2049..2885	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNWFQ010000036.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.guided.25, whole genome shotgun sequence	1246..2049	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWFQ010000036.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.guided.25, whole genome shotgun sequence	1246..2049	Streptomycin	AF313472	floR	98.11	1214/1215	ABNWFQ010000020.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.denovo.27, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNWFQ010000037.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.guided.26, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNWFQ010000021.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.denovo.28, whole genome shotgun sequence	866..1681	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNWFQ010000035.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.guided.24, whole genome shotgun sequence	370..1185	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNWFQ010000036.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.guided.25, whole genome shotgun sequence	370..1185	Sulfamethoxazole	AY034138	tet(A)	99.83	1200/1200	ABNWFQ010000019.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.denovo.22, whole genome shotgun sequence	749..1948	Doxycycline, Tetracycline	AY196695	tet(A)	99.83	1200/1200	ABNWFQ010000034.1 Salmonella enterica strain PNUSAS358344 SAMN35982773-rid18781653.guided.23, whole genome shotgun sequence	1308..2507	Doxycycline, Tetracycline	AY196695																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																						avrA	ABNWFQ010000007.1	186989..187858	99.08	870	0						
GCA_032723815.1_PDT001790292.1_genomic.fna	Salmonella_enterica	0.5207	287.192 KB	6	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWFS010000001.1 Salmonella enterica strain PNUSAS358341 SAMN35982768-rid18781643.denovo.01, whole genome shotgun sequence	529414..529851	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNWFS010000027.1 Salmonella enterica strain PNUSAS358341 SAMN35982768-rid18781643.denovo.27, whole genome shotgun sequence	11590..12232	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNWFS010000019.1 Salmonella enterica strain PNUSAS358341 SAMN35982768-rid18781643.denovo.19, whole genome shotgun sequence	72094..72235																																																avrA	ABNWFS010000003.1	139994..140863	99.77	870	0						
GCA_032723835.1_PDT001790291.1_genomic.fna	Salmonella_enterica	0.5226	335.836 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNWFR010000001.1 Salmonella enterica strain PNUSAS358333 SAMN35982771-rid18781633.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNWFR010000035.1 Salmonella enterica strain PNUSAS358333 SAMN35982771-rid18781633.guided.26, whole genome shotgun sequence	2354..2791	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWFR010000007.1	131436..132304	99.425	870	0						
GCA_032723855.1_PDT001790290.1_genomic.fna	Salmonella_enterica	0.5211	470.506 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWFT010000001.1 Salmonella enterica strain PNUSAS358339 SAMN35982765-rid18781623.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWFT010000031.1 Salmonella enterica strain PNUSAS358339 SAMN35982765-rid18781623.guided.20, whole genome shotgun sequence	22270..22707	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWFT010000003.1	94091..94960	99.655	870	0						
GCA_032723875.1_PDT001790286.1_genomic.fna	Salmonella_enterica	0.5214	334.603 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWFX010000005.1 Salmonella enterica strain PNUSAS358102 SAMN35982764-rid18781583.denovo.05, whole genome shotgun sequence	40900..41337	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWFX010000036.1 Salmonella enterica strain PNUSAS358102 SAMN35982764-rid18781583.guided.32, whole genome shotgun sequence	2380..2817	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNWFX010000031.1 Salmonella enterica strain PNUSAS358102 SAMN35982764-rid18781583.denovo.34, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWFX010000025.1 Salmonella enterica strain PNUSAS358102 SAMN35982764-rid18781583.denovo.25, whole genome shotgun sequence	6825..7467		enterobacteriales	IncFII(S)	100	262 / 262	ABNWFX010000027.1 Salmonella enterica strain PNUSAS358102 SAMN35982764-rid18781583.denovo.27, whole genome shotgun sequence	3390..3651																																									avrA	ABNWFX010000001.1	553626..554495	99.54	870	0						
GCA_032723895.1_PDT001790288.1_genomic.fna	Salmonella_enterica	0.5208	356.072 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWFU010000001.1 Salmonella enterica strain PNUSAS358334 SAMN35982762-rid18781603.denovo.01, whole genome shotgun sequence	605567..606004	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWFU010000033.1 Salmonella enterica strain PNUSAS358334 SAMN35982762-rid18781603.guided.23, whole genome shotgun sequence	7570..8007	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWFU010000010.1	169434..170302	99.195	870	0						
GCA_032723935.1_PDT001790289.1_genomic.fna	Salmonella_enterica	0.5212	220.83 KB	8	aroC_230,dnaN_38,hemD_158,hisD_363,purE_322*,sucA_340,thrA_510	Unknown	18:k:1,5	0		1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_230	dnaN	100	100	dnaN_38	hemD	100	100	hemD_158	hisD	100	100	hisD_363	purE	99.749373433584	100	purE_322*	sucA	100	100	sucA_340	thrA	100	100	thrA_510	18	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Memphis		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNWFV010000024.1 Salmonella enterica strain PNUSAS358338 SAMN35982763-rid18781613.denovo.24, whole genome shotgun sequence	15755..16288																																																																	
GCA_032723955.1_PDT001790287.1_genomic.fna	Salmonella_enterica	0.5205	406.079 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWFW010000003.1 Salmonella enterica strain PNUSAS358337 SAMN35982761-rid18781593.denovo.03, whole genome shotgun sequence	199595..200032	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWFW010000036.1 Salmonella enterica strain PNUSAS358337 SAMN35982761-rid18781593.guided.26, whole genome shotgun sequence	3734..4171	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWFW010000023.1 Salmonella enterica strain PNUSAS358337 SAMN35982761-rid18781593.denovo.24, whole genome shotgun sequence	6836..7478	enterobacteriales	IncFII(S)	100	262 / 262	ABNWFW010000019.1 Salmonella enterica strain PNUSAS358337 SAMN35982761-rid18781593.denovo.19, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNWFW010000020.1 Salmonella enterica strain PNUSAS358337 SAMN35982761-rid18781593.denovo.20, whole genome shotgun sequence	32011..32384																																									avrA	ABNWFW010000002.1	553690..554559	99.54	870	0						
GCA_032724035.1_PDT001940478.1_genomic.fna	Salmonella_enterica	0.5224	532.89 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWFZ010000001.1 Salmonella enterica strain PNUSAS390795 SAMN37831413-rid19836153.denovo.01, whole genome shotgun sequence	835247..835684	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWFZ010000020.1 Salmonella enterica strain PNUSAS390795 SAMN37831413-rid19836153.guided.17, whole genome shotgun sequence	1261..1698	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWFZ010000002.1	553309..554167	98.506	870	0						
GCA_032724055.1_PDT001940483.1_genomic.fna	Salmonella_enterica	0.5211	728.881 KB	3	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNWFY010000002.1 Salmonella enterica strain PNUSAS390825 SAMN37831077-rid19836203.denovo.02, whole genome shotgun sequence	636295..636732	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNWFY010000020.1 Salmonella enterica strain PNUSAS390825 SAMN37831077-rid19836203.guided.14, whole genome shotgun sequence	806..1243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWFY010000004.1	160397..161266	99.54	870	0						
GCA_032724075.1_PDT001940476.1_genomic.fna	Salmonella_enterica	0.5199	180.306 KB	10	aroC_188,dnaN_199*,hemD_21,hisD_62,purE_36,sucA_39,thrA_190	735*	8:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_188	dnaN	99.8003992015968	100	dnaN_199*	hemD	100	100	hemD_21	hisD	100	100	hisD_62	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_190	8	z4,z32	-	Salmonella enterica subspecies enterica (subspecies I)	Tallahassee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWGA010000008.1 Salmonella enterica strain PNUSAS390872 SAMN37831418-rid19836133.denovo.08, whole genome shotgun sequence	42614..43051	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.65	371/438	ABNWGA010000059.1 Salmonella enterica strain PNUSAS390872 SAMN37831418-rid19836133.guided.51, whole genome shotgun sequence	1..371	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNWGA010000025.1 Salmonella enterica strain PNUSAS390872 SAMN37831418-rid19836133.denovo.25, whole genome shotgun sequence	34958..35491																																																						avrA	ABNWGA010000003.1	93995..94864	99.655	870	0						
GCA_032724095.1_PDT001940474.1_genomic.fna	Salmonella_enterica	0.5221	773.547 KB	2	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA7,aac(3)-Id,aadA7,aac(3)-Id,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWGC010000001.1 Salmonella enterica strain PNUSAS390829 SAMN37831421-rid19836113.denovo.01, whole genome shotgun sequence	983812..984249	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWGC010000013.1 Salmonella enterica strain PNUSAS390829 SAMN37831421-rid19836113.denovo.13, whole genome shotgun sequence	15113..15949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNWGC010000013.1 Salmonella enterica strain PNUSAS390829 SAMN37831421-rid19836113.denovo.13, whole genome shotgun sequence	15949..16752	Streptomycin	AF321551	aadA7	100	798/798	ABNWGC010000013.1 Salmonella enterica strain PNUSAS390829 SAMN37831421-rid19836113.denovo.13, whole genome shotgun sequence	1127..1924	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	ABNWGC010000013.1 Salmonella enterica strain PNUSAS390829 SAMN37831421-rid19836113.denovo.13, whole genome shotgun sequence	575..1051	Gentamicin, Astromicin, Fortimicin	AB114632	aadA7	100	798/798	ABNWGC010000023.1 Salmonella enterica strain PNUSAS390829 SAMN37831421-rid19836113.guided.15, whole genome shotgun sequence	1168..1965	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	ABNWGC010000023.1 Salmonella enterica strain PNUSAS390829 SAMN37831421-rid19836113.guided.15, whole genome shotgun sequence	616..1092	Gentamicin, Astromicin, Fortimicin	AB114632	aph(6)-Id	100	837/837	ABNWGC010000025.1 Salmonella enterica strain PNUSAS390829 SAMN37831421-rid19836113.guided.18, whole genome shotgun sequence	2642..3478	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNWGC010000025.1 Salmonella enterica strain PNUSAS390829 SAMN37831421-rid19836113.guided.18, whole genome shotgun sequence	1839..2642	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNWGC010000026.1 Salmonella enterica strain PNUSAS390829 SAMN37831421-rid19836113.guided.19, whole genome shotgun sequence	1278..1715	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNWGC010000016.1 Salmonella enterica strain PNUSAS390829 SAMN37831421-rid19836113.denovo.22, whole genome shotgun sequence	408..1268	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNWGC010000027.1 Salmonella enterica strain PNUSAS390829 SAMN37831421-rid19836113.guided.21, whole genome shotgun sequence	965..1825	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	ABNWGC010000013.1 Salmonella enterica strain PNUSAS390829 SAMN37831421-rid19836113.denovo.13, whole genome shotgun sequence	2429..3268	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWGC010000023.1 Salmonella enterica strain PNUSAS390829 SAMN37831421-rid19836113.guided.15, whole genome shotgun sequence	2470..3309	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNWGC010000013.1 Salmonella enterica strain PNUSAS390829 SAMN37831421-rid19836113.denovo.13, whole genome shotgun sequence	10174..11373	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWGC010000024.1 Salmonella enterica strain PNUSAS390829 SAMN37831421-rid19836113.guided.16, whole genome shotgun sequence	1930..3129	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	ABNWGC010000003.1	144530..145399	99.31	870	0						
GCA_032724115.1_PDT001940470.1_genomic.fna	Salmonella_enterica	0.5218	699.691 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWGB010000001.1 Salmonella enterica strain PNUSAS390805 SAMN37831069-rid19836073.denovo.01, whole genome shotgun sequence	596592..597029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWGB010000017.1 Salmonella enterica strain PNUSAS390805 SAMN37831069-rid19836073.guided.13, whole genome shotgun sequence	722..1159	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWGB010000002.1	544677..545545	99.425	870	0						
GCA_032724135.1_PDT001940466.1_genomic.fna	Salmonella_enterica	0.5223	762.545 KB	2	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	2	acrB_p.R717Q,pmrB_p.V161G	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWGD010000001.1 Salmonella enterica strain PNUSAS390818 SAMN37831075-rid19836033.denovo.01, whole genome shotgun sequence	1369556..1369993	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWGD010000019.1 Salmonella enterica strain PNUSAS390818 SAMN37831075-rid19836033.guided.15, whole genome shotgun sequence	934..1371	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										acrB p.R717Q	CGA -> CAA	R -> Q	Azithromycin	31730615	pmrB p.V161G	GTG -> GGG	V -> G	Colistin	19332669																																																																						avrA	ABNWGD010000003.1	553688..554557	99.655	870	0						
GCA_032724155.1_PDT001940467.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWGE010000001.1 Salmonella enterica strain PNUSAS390807 SAMN37831068-rid19836043.denovo.01, whole genome shotgun sequence	162338..162775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWGE010000023.1 Salmonella enterica strain PNUSAS390807 SAMN37831068-rid19836043.guided.17, whole genome shotgun sequence	5885..6322	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWGE010000013.1 Salmonella enterica strain PNUSAS390807 SAMN37831068-rid19836043.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNWGE010000013.1 Salmonella enterica strain PNUSAS390807 SAMN37831068-rid19836043.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNWGE010000002.1	553636..554505	99.54	870	0						
GCA_032724175.1_PDT001940464.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWGF010000001.1 Salmonella enterica strain PNUSAS390804 SAMN37831076-rid19836013.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.36	385/438	ABNWGF010000026.1 Salmonella enterica strain PNUSAS390804 SAMN37831076-rid19836013.guided.20, whole genome shotgun sequence	1..385	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWGF010000013.1 Salmonella enterica strain PNUSAS390804 SAMN37831076-rid19836013.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNWGF010000013.1 Salmonella enterica strain PNUSAS390804 SAMN37831076-rid19836013.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNWGF010000002.1	553636..554505	99.54	870	0						
GCA_032724195.1_PDT001940462.1_genomic.fna	Salmonella_enterica	0.5222	505.397 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWGH010000002.1 Salmonella enterica strain PNUSAS390793 SAMN37831082-rid19835993.denovo.02, whole genome shotgun sequence	383063..383500	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWGH010000024.1 Salmonella enterica strain PNUSAS390793 SAMN37831082-rid19835993.guided.18, whole genome shotgun sequence	1828..2265	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWGH010000009.1	150677..151546	99.195	870	0						
GCA_032724215.1_PDT001940461.1_genomic.fna	Salmonella_enterica	0.5207	749.628 KB	3	aroC_13,dnaN_12,hemD_63,hisD_16,purE_13,sucA_16,thrA_4	437	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_63	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNWGG010000002.1 Salmonella enterica strain PNUSAS390823 SAMN37831086-rid19835983.denovo.02, whole genome shotgun sequence	264554..264991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNWGG010000022.1 Salmonella enterica strain PNUSAS390823 SAMN37831086-rid19835983.guided.16, whole genome shotgun sequence	1686..2123	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWGG010000004.1	552829..553698	99.54	870	0						
GCA_032724235.1_PDT001940459.1_genomic.fna	Salmonella_enterica	0.5215	513.505 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWGI010000001.1 Salmonella enterica strain PNUSAS390826 SAMN37831078-rid19835963.denovo.01, whole genome shotgun sequence	477376..477813	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWGI010000022.1 Salmonella enterica strain PNUSAS390826 SAMN37831078-rid19835963.guided.18, whole genome shotgun sequence	674..1111	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWGI010000002.1	504098..504968	99.196	871	0						
GCA_032724255.1_PDT001940314.1_genomic.fna	Salmonella_enterica	0.5211	145.236 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFQD010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047413 SAMN37820025-rid19825133.denovo.24, whole genome shotgun sequence	12496..12933	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFQD010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047413 SAMN37820025-rid19825133.guided.34, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFQD010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047413 SAMN37820025-rid19825133.denovo.68, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQFQD010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047413 SAMN37820025-rid19825133.denovo.19, whole genome shotgun sequence	48434..49076		enterobacteriales	IncFII(S)	100	262 / 262	DAQFQD010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047413 SAMN37820025-rid19825133.denovo.19, whole genome shotgun sequence	64161..64422																																									avrA	DAQFQD010000006.1	106346..107215	99.885	870	0						
GCA_032724275.1_PDT001940212.1_genomic.fna	Salmonella_enterica	0.5222	82.382 KB	21	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncFII(pCoo)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFQE010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045380 SAMN37819829-rid19822313.denovo.002, whole genome shotgun sequence	83575..84012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFQE010000127.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045380 SAMN37819829-rid19822313.guided.084, whole genome shotgun sequence	11594..12031	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFQE010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045380 SAMN37819829-rid19822313.denovo.015, whole genome shotgun sequence	48400..49042	enterobacteriales	IncFII(S)	100	262 / 262	DAQFQE010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045380 SAMN37819829-rid19822313.denovo.015, whole genome shotgun sequence	64127..64388		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	DAQFQE010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045380 SAMN37819829-rid19822313.denovo.031, whole genome shotgun sequence	37296..37556																																									avrA	DAQFQE010000004.1	61077..61946	99.885	870	0						
GCA_032724295.1_PDT001939856.1_genomic.fna	Salmonella_enterica	0.5224	50.495 KB	30	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	0		3	IncB/O/K/Z,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFQG010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045846 SAMN37819893-rid19825013.denovo.065, whole genome shotgun sequence	12524..12961	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFQG010000203.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045846 SAMN37819893-rid19825013.guided.013, whole genome shotgun sequence	42407..42844	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQFQG010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045846 SAMN37819893-rid19825013.denovo.009, whole genome shotgun sequence	4962..5822	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQFQG010000206.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045846 SAMN37819893-rid19825013.guided.125, whole genome shotgun sequence	5003..5863	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncB/O/K/Z	100	160 / 160	DAQFQG010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045846 SAMN37819893-rid19825013.denovo.009, whole genome shotgun sequence	11397..11556	enterobacteriales	IncFIB(S)	100	643 / 643	DAQFQG010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045846 SAMN37819893-rid19825013.denovo.114, whole genome shotgun sequence	9115..9757		enterobacteriales	IncFII(S)	100	262 / 262	DAQFQG010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045846 SAMN37819893-rid19825013.denovo.037, whole genome shotgun sequence	29405..29666																																									avrA	DAQFQG010000005.1	105188..106057	99.885	870	0						
GCA_032724315.1_PDT001939898.1_genomic.fna	Salmonella_enterica	0.5218	78.164 KB	18	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aac(6')-Iaa,aph(6)-Id,qnrD2,qnrD2,tet(A),tet(A)	2	gyrA_p.S83Y,parC_p.T57S	3	Col(pHAD28),Col3M,Col3M,ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQFQF010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00040496 SAMN37819768-rid19822193.denovo.058, whole genome shotgun sequence	12494..12931	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	765/837	DAQFQF010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00040496 SAMN37819768-rid19822193.denovo.096, whole genome shotgun sequence	2457..3221	Streptomycin	M28829	aac(6')-Iaa	99.54	438/438	DAQFQF010000121.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00040496 SAMN37819768-rid19822193.guided.074, whole genome shotgun sequence	7304..7741	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	769/837	DAQFQF010000124.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00040496 SAMN37819768-rid19822193.guided.095, whole genome shotgun sequence	38..806	Streptomycin	M28829	qnrD2	100	645/645	DAQFQF010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00040496 SAMN37819768-rid19822193.denovo.091, whole genome shotgun sequence	847..1491	Ciprofloxacin	KF055448	qnrD2	100	645/645	DAQFQF010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00040496 SAMN37819768-rid19822193.guided.090, whole genome shotgun sequence	1..645	Ciprofloxacin	KF055448	tet(A)	100	1200/1200	DAQFQF010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00040496 SAMN37819768-rid19822193.denovo.085, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQFQF010000122.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00040496 SAMN37819768-rid19822193.guided.089, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQFQF010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00040496 SAMN37819768-rid19822193.denovo.102, whole genome shotgun sequence	368..498	enterobacteriales	Col3M	98.09	157 / 157	DAQFQF010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00040496 SAMN37819768-rid19822193.denovo.091, whole genome shotgun sequence	1585..1741		enterobacteriales	Col3M	98.09	157 / 157	DAQFQF010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00040496 SAMN37819768-rid19822193.guided.090, whole genome shotgun sequence	4019..4175		enterobacteriales	ColpVC	96.89	193 / 193	DAQFQF010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hadar isolate AUSMDU00040496 SAMN37819768-rid19822193.denovo.109, whole genome shotgun sequence	996..1188																																		avrA	DAQFQF010000016.1	39602..40471	99.655	870	0						
GCA_032725035.1_PDT001940490.1_genomic.fna	Salmonella_enterica	0.5204	261.476 KB	6	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWGJ010000007.1 Salmonella enterica strain PNUSAS390831 SAMN37831420-rid19836273.denovo.07, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWGJ010000042.1 Salmonella enterica strain PNUSAS390831 SAMN37831420-rid19836273.guided.29, whole genome shotgun sequence	2895..3332	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNWGJ010000022.1 Salmonella enterica strain PNUSAS390831 SAMN37831420-rid19836273.denovo.22, whole genome shotgun sequence	5848..6381																																																						avrA	ABNWGJ010000015.1	93717..94585	99.54	870	0						
GCA_032725055.1_PDT001940479.1_genomic.fna	Salmonella_enterica	0.5175	230.86 KB	7	aroC_488,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2058	48:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_488	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:z4,z32:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABNWGM010000031.1 Salmonella enterica strain PNUSAS390828 SAMN37831419-rid19836163.denovo.31, whole genome shotgun sequence	6640..7077	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABNWGM010000054.1 Salmonella enterica strain PNUSAS390828 SAMN37831419-rid19836163.guided.36, whole genome shotgun sequence	1247..1684	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNWGM010000012.1 Salmonella enterica strain PNUSAS390828 SAMN37831419-rid19836163.denovo.12, whole genome shotgun sequence	38587..39229																																																																	
GCA_032725075.1_PDT001940480.1_genomic.fna	Salmonella_enterica	0.5207	358.738 KB	6	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNWGK010000003.1 Salmonella enterica strain PNUSAS390794 SAMN37831414-rid19836173.denovo.03, whole genome shotgun sequence	239429..239866	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNWGK010000039.1 Salmonella enterica strain PNUSAS390794 SAMN37831414-rid19836173.guided.30, whole genome shotgun sequence	3902..4339	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNWGK010000021.1 Salmonella enterica strain PNUSAS390794 SAMN37831414-rid19836173.denovo.21, whole genome shotgun sequence	37298..37940	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNWGK010000021.1 Salmonella enterica strain PNUSAS390794 SAMN37831414-rid19836173.denovo.21, whole genome shotgun sequence	10978..11204																																																											
GCA_032725095.1_PDT001940472.1_genomic.fna	Salmonella_enterica	0.5213	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNWGL010000001.1 Salmonella enterica strain PNUSAS390792 SAMN37831083-rid19836093.denovo.01, whole genome shotgun sequence	717104..717541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNWGL010000021.1 Salmonella enterica strain PNUSAS390792 SAMN37831083-rid19836093.guided.14, whole genome shotgun sequence	1820..2257	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWGL010000004.1	548111..548980	99.54	870	0						
GCA_032725115.1_PDT001940471.1_genomic.fna	Salmonella_enterica	0.5212	735.682 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNWGN010000001.1 Salmonella enterica strain PNUSAS390824 SAMN37831085-rid19836083.denovo.01, whole genome shotgun sequence	717532..717969	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.73	369/438	ABNWGN010000018.1 Salmonella enterica strain PNUSAS390824 SAMN37831085-rid19836083.guided.12, whole genome shotgun sequence	1..369	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWGN010000005.1	160311..161180	99.54	870	0						
GCA_032725135.1_PDT001940465.1_genomic.fna	Salmonella_enterica	0.5213	203.759 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aadA1,aadA1,aac(6')-Iaa,aph(3')-Ia,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWGP010000001.1 Salmonella enterica strain PNUSAS390815 SAMN37831084-rid19836023.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWGP010000024.1 Salmonella enterica strain PNUSAS390815 SAMN37831084-rid19836023.denovo.24, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWGP010000024.1 Salmonella enterica strain PNUSAS390815 SAMN37831084-rid19836023.denovo.24, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABNWGP010000042.1 Salmonella enterica strain PNUSAS390815 SAMN37831084-rid19836023.denovo.48, whole genome shotgun sequence	93..908	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aadA1	99.75	792/792	ABNWGP010000049.1 Salmonella enterica strain PNUSAS390815 SAMN37831084-rid19836023.guided.42, whole genome shotgun sequence	779..1570	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWGP010000049.1 Salmonella enterica strain PNUSAS390815 SAMN37831084-rid19836023.guided.42, whole genome shotgun sequence	779..1570	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNWGP010000053.1 Salmonella enterica strain PNUSAS390815 SAMN37831084-rid19836023.guided.46, whole genome shotgun sequence	478..915	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNWGP010000054.1 Salmonella enterica strain PNUSAS390815 SAMN37831084-rid19836023.guided.49, whole genome shotgun sequence	4..819	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	sul1	100	840/840	ABNWGP010000024.1 Salmonella enterica strain PNUSAS390815 SAMN37831084-rid19836023.denovo.24, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWGP010000049.1 Salmonella enterica strain PNUSAS390815 SAMN37831084-rid19836023.guided.42, whole genome shotgun sequence	2075..2914	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNWGP010000024.1 Salmonella enterica strain PNUSAS390815 SAMN37831084-rid19836023.denovo.24, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWGP010000050.1 Salmonella enterica strain PNUSAS390815 SAMN37831084-rid19836023.guided.43, whole genome shotgun sequence	276..1475	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNWGP010000035.1 Salmonella enterica strain PNUSAS390815 SAMN37831084-rid19836023.denovo.36, whole genome shotgun sequence	1742..2215	Trimethoprim	AF393510	dfrA14	100	474/474	ABNWGP010000051.1 Salmonella enterica strain PNUSAS390815 SAMN37831084-rid19836023.guided.44, whole genome shotgun sequence	856..1329	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNWGP010000029.1 Salmonella enterica strain PNUSAS390815 SAMN37831084-rid19836023.denovo.29, whole genome shotgun sequence	9109..9668																																																						avrA	ABNWGP010000002.1	149828..150697	99.655	870	0						
GCA_032725175.1_PDT001940458.1_genomic.fna	Salmonella_enterica	0.5217	301.225 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNWGR010000001.1 Salmonella enterica strain PNUSAS390817 SAMN37831079-rid19835953.denovo.01, whole genome shotgun sequence	625307..625744	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNWGR010000039.1 Salmonella enterica strain PNUSAS390817 SAMN37831079-rid19835953.guided.35, whole genome shotgun sequence	305..742	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNWGR010000014.1 Salmonella enterica strain PNUSAS390817 SAMN37831079-rid19835953.denovo.14, whole genome shotgun sequence	37289..37931	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNWGR010000014.1 Salmonella enterica strain PNUSAS390817 SAMN37831079-rid19835953.denovo.14, whole genome shotgun sequence	10977..11203		enterobacteriales	IncFII(Yp)	99.57	230 / 230	ABNWGR010000018.1 Salmonella enterica strain PNUSAS390817 SAMN37831079-rid19835953.denovo.18, whole genome shotgun sequence	5811..6040																																																				
GCA_032725195.1_PDT001940463.1_genomic.fna	Salmonella_enterica	0.5212	720.971 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNWGQ010000001.1 Salmonella enterica strain PNUSAS390810 SAMN37831066-rid19836003.denovo.01, whole genome shotgun sequence	704722..705159	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNWGQ010000020.1 Salmonella enterica strain PNUSAS390810 SAMN37831066-rid19836003.guided.16, whole genome shotgun sequence	850..1287	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWGQ010000003.1	160443..161312	99.54	870	0						
GCA_032725215.1_PDT001940457.1_genomic.fna	Salmonella_enterica	0.5218	406.956 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNWGS010000001.1 Salmonella enterica strain PNUSAS390811 SAMN37831067-rid19835943.denovo.01, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNWGS010000047.1 Salmonella enterica strain PNUSAS390811 SAMN37831067-rid19835943.guided.34, whole genome shotgun sequence	2573..3010	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWGS010000012.1	101941..102810	99.655	870	0						
GCA_032725235.1_PDT001940453.1_genomic.fna	Salmonella_enterica	0.5215	409.598 KB	4	aroC_118,dnaN_175,hemD_8,hisD_115,purE_88,sucA_906,thrA_84	6063	35:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_118	dnaN	100	100	dnaN_175	hemD	100	100	hemD_8	hisD	100	100	hisD_115	purE	100	100	purE_88	sucA	100	100	sucA_906	thrA	100	100	thrA_84	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWGT010000001.1 Salmonella enterica strain PNUSAS390806 SAMN37831072-rid19835903.denovo.01, whole genome shotgun sequence	656112..656549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	433/438	ABNWGT010000037.1 Salmonella enterica strain PNUSAS390806 SAMN37831072-rid19835903.guided.25, whole genome shotgun sequence	3308..3740	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWGT010000002.1	143062..143931	99.08	870	0						
GCA_032725255.1_PDT001940455.1_genomic.fna	Salmonella_enterica	0.5212	658.118 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNWGU010000001.1 Salmonella enterica strain PNUSAS390822 SAMN37831064-rid19835923.denovo.01, whole genome shotgun sequence	711922..712359	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNWGU010000022.1 Salmonella enterica strain PNUSAS390822 SAMN37831064-rid19835923.guided.18, whole genome shotgun sequence	592..1029	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWGU010000004.1	548111..548980	99.54	870	0						
GCA_032725275.1_PDT001940389.1_genomic.fna	Salmonella_enterica	0.5216	124.151 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87G,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFRP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041427 SAMN37819785-rid19825163.denovo.01, whole genome shotgun sequence	477832..478269	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	DAQFRP010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041427 SAMN37819785-rid19825163.denovo.57, whole genome shotgun sequence	11945..12736	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	DAQFRP010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041427 SAMN37819785-rid19825163.denovo.57, whole genome shotgun sequence	11945..12736	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	DAQFRP010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041427 SAMN37819785-rid19825163.denovo.82, whole genome shotgun sequence	92..907	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aac(6')-Iaa	97.49	438/438	DAQFRP010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041427 SAMN37819785-rid19825163.guided.31, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	DAQFRP010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041427 SAMN37819785-rid19825163.guided.56, whole genome shotgun sequence	1437..2228	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	DAQFRP010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041427 SAMN37819785-rid19825163.guided.56, whole genome shotgun sequence	1437..2228	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	DAQFRP010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041427 SAMN37819785-rid19825163.guided.81, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	sul1	100	840/840	DAQFRP010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041427 SAMN37819785-rid19825163.denovo.57, whole genome shotgun sequence	10601..11440	Sulfamethoxazole	U12338	sul1	100	840/840	DAQFRP010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041427 SAMN37819785-rid19825163.guided.56, whole genome shotgun sequence	2733..3572	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQFRP010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041427 SAMN37819785-rid19825163.denovo.33, whole genome shotgun sequence	1838..3037	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQFRP010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041427 SAMN37819785-rid19825163.guided.54, whole genome shotgun sequence	1717..2916	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQFRP010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041427 SAMN37819785-rid19825163.denovo.63, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	DAQFRP010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041427 SAMN37819785-rid19825163.guided.66, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	DAQFRP010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041427 SAMN37819785-rid19825163.denovo.48, whole genome shotgun sequence	9107..9666																																																						avrA	DAQFRP010000008.1	124079..124948	99.655	870	0						
GCA_032725295.1_PDT001940452.1_genomic.fna	Salmonella_enterica	0.5216	417.752 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNWGV010000001.1 Salmonella enterica strain PNUSAS390809 SAMN37831071-rid19835893.denovo.01, whole genome shotgun sequence	136918..137355	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNWGV010000045.1 Salmonella enterica strain PNUSAS390809 SAMN37831071-rid19835893.guided.30, whole genome shotgun sequence	2635..3072	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWGV010000012.1	101873..102742	99.655	870	0						
GCA_032725315.1_PDT001940379.1_genomic.fna	Salmonella_enterica	0.5215	136.132 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFRQ010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041869 SAMN37819794-rid19826613.denovo.19, whole genome shotgun sequence	44035..44472	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFRQ010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041869 SAMN37819794-rid19826613.guided.33, whole genome shotgun sequence	31020..31457	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFRQ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041869 SAMN37819794-rid19826613.denovo.32, whole genome shotgun sequence	40535..41177	enterobacteriales	IncFII(S)	100	262 / 262	DAQFRQ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041869 SAMN37819794-rid19826613.denovo.49, whole genome shotgun sequence	3423..3684																																																avrA	DAQFRQ010000005.1	141587..142456	99.54	870	0						
GCA_032725335.1_PDT001940150.1_genomic.fna	Salmonella_enterica	0.5226	156.544 KB	10	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQFRR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00048164 SAMN37820058-rid19826553.denovo.01, whole genome shotgun sequence	12516..12953	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQFRR010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00048164 SAMN37820058-rid19826553.guided.35, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFRR010000004.1	125282..126151	98.966	870	0						
GCA_032725345.1_PDT001940140.1_genomic.fna	Salmonella_enterica	0.5213	183.93 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFRS010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023448 SAMN37819564-rid19826543.denovo.03, whole genome shotgun sequence	17279..17716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFRS010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023448 SAMN37819564-rid19826543.guided.27, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFRS010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023448 SAMN37819564-rid19826543.denovo.28, whole genome shotgun sequence	48417..49059	enterobacteriales	IncFII(S)	100	262 / 262	DAQFRS010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023448 SAMN37819564-rid19826543.denovo.28, whole genome shotgun sequence	4164..4425																																																avrA	DAQFRS010000006.1	140789..141658	99.54	870	0						
GCA_032725375.1_PDT001940105.1_genomic.fna	Salmonella_enterica	0.5208	184.448 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncFII(pCTU2),pESA2	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFRT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025948 SAMN37819610-rid19823643.denovo.01, whole genome shotgun sequence	108793..109230	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFRT010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025948 SAMN37819610-rid19823643.guided.21, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFRT010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025948 SAMN37819610-rid19823643.denovo.27, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	DAQFRT010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025948 SAMN37819610-rid19823643.denovo.42, whole genome shotgun sequence	3423..3684		enterobacteriales	IncFII(pCTU2)	97.23	577 / 577	DAQFRT010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025948 SAMN37819610-rid19823643.denovo.37, whole genome shotgun sequence	4742..5318		enterobacteriales	pESA2	98.4	750 / 750	DAQFRT010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025948 SAMN37819610-rid19823643.denovo.37, whole genome shotgun sequence	21137..21886																																		avrA	DAQFRT010000007.1	115382..116251	99.54	870	0						
GCA_032725395.1_PDT001940065.1_genomic.fna	Salmonella_enterica	0.5191	167.087 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFRV010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036132 SAMN37819733-rid19826513.denovo.03, whole genome shotgun sequence	52258..52695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFRV010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036132 SAMN37819733-rid19826513.guided.28, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFRV010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036132 SAMN37819733-rid19826513.denovo.30, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	DAQFRV010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036132 SAMN37819733-rid19826513.denovo.44, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	95.76	377 / 377	DAQFRV010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036132 SAMN37819733-rid19826513.denovo.33, whole genome shotgun sequence	34215..34591																																									avrA	DAQFRV010000007.1	115373..116242	99.54	870	0						
GCA_032725415.1_PDT001940085.1_genomic.fna	Salmonella_enterica	0.521	171.316 KB	9	aroC_454,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	1925	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_454	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFRU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027513 SAMN37819628-rid19823633.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFRU010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027513 SAMN37819628-rid19823633.guided.18, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFRU010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027513 SAMN37819628-rid19823633.denovo.29, whole genome shotgun sequence	40535..41177	enterobacteriales	IncFII(S)	100	262 / 262	DAQFRU010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00027513 SAMN37819628-rid19823633.denovo.46, whole genome shotgun sequence	3423..3684																																																avrA	DAQFRU010000008.1	43668..44537	99.54	870	0						
GCA_032725435.1_PDT001939866.1_genomic.fna	Salmonella_enterica	0.5214	102.242 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFRY010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045729 SAMN37819884-rid19825023.denovo.13, whole genome shotgun sequence	12568..13005	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFRY010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045729 SAMN37819884-rid19825023.guided.31, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFRY010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045729 SAMN37819884-rid19825023.denovo.18, whole genome shotgun sequence	48454..49096	enterobacteriales	IncFII(S)	100	262 / 262	DAQFRY010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045729 SAMN37819884-rid19825023.denovo.18, whole genome shotgun sequence	64181..64442																																																avrA	DAQFRY010000008.1	61116..61985	99.885	870	0						
GCA_032725455.1_PDT001939998.1_genomic.fna	Salmonella_enterica	0.5224	48.707 KB	31	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFRX010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046508 SAMN37819967-rid19826493.denovo.021, whole genome shotgun sequence	13401..13838	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFRX010000187.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046508 SAMN37819967-rid19826493.guided.106, whole genome shotgun sequence	1942..2379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFRX010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046508 SAMN37819967-rid19826493.denovo.027, whole genome shotgun sequence	44749..45391	enterobacteriales	IncFII(S)	100	262 / 262	DAQFRX010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046508 SAMN37819967-rid19826493.denovo.027, whole genome shotgun sequence	29403..29664																																																avrA	DAQFRX010000024.1	62150..63019	99.885	870	0						
GCA_032725465.1_PDT001940010.1_genomic.fna	Salmonella_enterica	0.5216	80.931 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFRW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046440 SAMN37819956-rid19823613.denovo.001, whole genome shotgun sequence	223700..224137	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFRW010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046440 SAMN37819956-rid19823613.guided.017, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFRW010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046440 SAMN37819956-rid19823613.denovo.031, whole genome shotgun sequence	44812..45454	enterobacteriales	IncFII(S)	100	262 / 262	DAQFRW010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046440 SAMN37819956-rid19823613.denovo.031, whole genome shotgun sequence	29466..29727																																																avrA	DAQFRW010000008.1	108135..109004	99.885	870	0						
GCA_032725495.1_PDT001939789.1_genomic.fna	Salmonella_enterica	0.5217	84.145 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFSA010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049535 SAMN37820126-rid19824993.denovo.004, whole genome shotgun sequence	146889..147326	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFSA010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049535 SAMN37820126-rid19824993.guided.032, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFSA010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049535 SAMN37820126-rid19824993.denovo.013, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQFSA010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049535 SAMN37820126-rid19824993.denovo.013, whole genome shotgun sequence	60371..60632																																																avrA	DAQFSA010000022.1	39625..40494	99.885	870	0						
GCA_032725515.1_PDT001939836.1_genomic.fna	Salmonella_enterica	0.5209	127.48 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFRZ010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022857 SAMN37819557-rid19826443.denovo.45, whole genome shotgun sequence	14116..14553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFRZ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022857 SAMN37819557-rid19826443.guided.44, whole genome shotgun sequence	14158..14595	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFRZ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022857 SAMN37819557-rid19826443.denovo.32, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQFRZ010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022857 SAMN37819557-rid19826443.denovo.61, whole genome shotgun sequence	3414..3675		enterobacteriales	IncX1	98.4	374 / 374	DAQFRZ010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022857 SAMN37819557-rid19826443.denovo.42, whole genome shotgun sequence	10523..10896																																									avrA	DAQFRZ010000003.1	140720..141589	99.54	870	0						
GCA_032726035.1_PDT001940487.1_genomic.fna	Salmonella_enterica	0.5212	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNWGW010000001.1 Salmonella enterica strain PNUSAS390799 SAMN37831408-rid19836243.denovo.01, whole genome shotgun sequence	717525..717962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNWGW010000021.1 Salmonella enterica strain PNUSAS390799 SAMN37831408-rid19836243.guided.15, whole genome shotgun sequence	3607..4044	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWGW010000004.1	160433..161302	99.54	870	0						
GCA_032726055.1_PDT001940484.1_genomic.fna	Salmonella_enterica	0.5212	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNWGX010000001.1 Salmonella enterica strain PNUSAS390819 SAMN37831416-rid19836213.denovo.01, whole genome shotgun sequence	706696..707133	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNWGX010000019.1 Salmonella enterica strain PNUSAS390819 SAMN37831416-rid19836213.guided.13, whole genome shotgun sequence	315..752	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWGX010000004.1	160573..161442	99.54	870	0						
GCA_032726075.1_PDT001940482.1_genomic.fna	Salmonella_enterica	0.5216	258.144 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWGY010000002.1 Salmonella enterica strain PNUSAS390798 SAMN37831412-rid19836193.denovo.02, whole genome shotgun sequence	310264..310701	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWGY010000043.1 Salmonella enterica strain PNUSAS390798 SAMN37831412-rid19836193.guided.38, whole genome shotgun sequence	221..658	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNWGY010000015.1 Salmonella enterica strain PNUSAS390798 SAMN37831412-rid19836193.denovo.15, whole genome shotgun sequence	44832..45474	enterobacteriales	IncFII(S)	100	262 / 262	ABNWGY010000015.1 Salmonella enterica strain PNUSAS390798 SAMN37831412-rid19836193.denovo.15, whole genome shotgun sequence	29486..29747																																																avrA	ABNWGY010000001.1	508255..509124	99.885	870	0						
GCA_032726095.1_PDT001940473.1_genomic.fna	Salmonella_enterica	0.522	298.595 KB	6	aroC_83,dnaN_11,hemD_551,hisD_13,purE_77,sucA_71,thrA_4	3499	8:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_83	dnaN	100	100	dnaN_11	hemD	100	100	hemD_551	hisD	100	100	hisD_13	purE	100	100	purE_77	sucA	100	100	sucA_71	thrA	100	100	thrA_4	8	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Gatuni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWHA010000013.1 Salmonella enterica strain PNUSAS390797 SAMN37831410-rid19836103.denovo.13, whole genome shotgun sequence	37914..38351	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.88	357/438	ABNWHA010000033.1 Salmonella enterica strain PNUSAS390797 SAMN37831410-rid19836103.guided.27, whole genome shotgun sequence	1..357	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWHA010000001.1	141129..141998	99.655	870	0						
GCA_032726115.1_PDT001940475.1_genomic.fna	Salmonella_enterica	0.5199	687.422 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa	1	parC_p.T57S	4	IncFIB(pB171),IncFII(pCRY),IncI(Gamma),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNWGZ010000001.1 Salmonella enterica strain PNUSAS390796 SAMN37831415-rid19836123.denovo.01, whole genome shotgun sequence	404710..405147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNWGZ010000011.1 Salmonella enterica strain PNUSAS390796 SAMN37831415-rid19836123.denovo.11, whole genome shotgun sequence	17251..17893	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNWGZ010000016.1 Salmonella enterica strain PNUSAS390796 SAMN37831415-rid19836123.denovo.16, whole genome shotgun sequence	20814..21406		enterobacteriales	IncI(Gamma)	97.81	137 / 141	ABNWGZ010000021.1 Salmonella enterica strain PNUSAS390796 SAMN37831415-rid19836123.denovo.21, whole genome shotgun sequence	12096..12232		enterobacteriales	IncI1-I(Alpha)	98.6	143 / 142	ABNWGZ010000050.1 Salmonella enterica strain PNUSAS390796 SAMN37831415-rid19836123.denovo.52, whole genome shotgun sequence	1797..1939																																		avrA	ABNWGZ010000002.1	592772..593640	99.655	870	0						
GCA_032726135.1_PDT001940381.1_genomic.fna	Salmonella_enterica	0.5219	119.778 KB	13	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFTA010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041740 SAMN37819792-rid19825153.denovo.25, whole genome shotgun sequence	14078..14515	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFTA010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00041740 SAMN37819792-rid19825153.guided.44, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQFTA010000013.1	43576..44445	99.54	870	0						
GCA_032726155.1_PDT001940304.1_genomic.fna	Salmonella_enterica	0.5221	86.88 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_1113,thrA_2	7910	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_1113	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFTB010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047528 SAMN37820034-rid19826593.denovo.009, whole genome shotgun sequence	12525..12962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFTB010000116.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047528 SAMN37820034-rid19826593.guided.049, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFTB010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047528 SAMN37820034-rid19826593.denovo.017, whole genome shotgun sequence	48417..49059	enterobacteriales	IncFII(S)	100	262 / 262	DAQFTB010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047528 SAMN37820034-rid19826593.denovo.017, whole genome shotgun sequence	64144..64405																																																avrA	DAQFTB010000006.1	106291..107160	99.885	870	0						
GCA_032726175.1_PDT001940294.1_genomic.fna	Salmonella_enterica	0.5211	98.586 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFTC010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049556 SAMN37820129-rid19825123.denovo.12, whole genome shotgun sequence	55685..56122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFTC010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049556 SAMN37820129-rid19825123.guided.14, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFTC010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049556 SAMN37820129-rid19825123.denovo.16, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQFTC010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049556 SAMN37820129-rid19825123.denovo.16, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFTC010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049556 SAMN37820129-rid19825123.denovo.42, whole genome shotgun sequence	22488..22624																																									avrA	DAQFTC010000039.1	39625..40494	99.885	870	0						
GCA_032726195.1_PDT001940217.1_genomic.fna	Salmonella_enterica	0.5225	59.257 KB	28	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFTE010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045346 SAMN37819825-rid19826573.denovo.027, whole genome shotgun sequence	7004..7441	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFTE010000168.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045346 SAMN37819825-rid19826573.guided.075, whole genome shotgun sequence	15073..15510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFTE010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045346 SAMN37819825-rid19826573.denovo.031, whole genome shotgun sequence	44750..45392	enterobacteriales	IncFII(S)	100	262 / 262	DAQFTE010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045346 SAMN37819825-rid19826573.denovo.031, whole genome shotgun sequence	29404..29665																																																avrA	DAQFTE010000002.1	99932..100801	99.885	870	0						
GCA_032726215.1_PDT001940197.1_genomic.fna	Salmonella_enterica	0.5214	118.521 KB	15	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFTD010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046044 SAMN37819929-rid19827963.denovo.04, whole genome shotgun sequence	77741..78178	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFTD010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046044 SAMN37819929-rid19827963.guided.31, whole genome shotgun sequence	42518..42955	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFTD010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046044 SAMN37819929-rid19827963.denovo.72, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFTD010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046044 SAMN37819929-rid19827963.denovo.29, whole genome shotgun sequence	40535..41177		enterobacteriales	IncFII(S)	100	262 / 262	DAQFTD010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046044 SAMN37819929-rid19827963.denovo.29, whole genome shotgun sequence	55560..55821																																									avrA	DAQFTD010000010.1	60945..61814	99.54	870	0						
GCA_032726235.1_PDT001940132.1_genomic.fna	Salmonella_enterica	0.5206	126.585 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFTG010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021441 SAMN37819516-rid19827953.denovo.02, whole genome shotgun sequence	62396..62833	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFTG010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021441 SAMN37819516-rid19827953.guided.53, whole genome shotgun sequence	5295..5732	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	DAQFTG010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021441 SAMN37819516-rid19827953.denovo.33, whole genome shotgun sequence	39315..40175	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQFTG010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021441 SAMN37819516-rid19827953.denovo.33, whole genome shotgun sequence	39315..40175	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQFTG010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021441 SAMN37819516-rid19827953.denovo.33, whole genome shotgun sequence	39315..40175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQFTG010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021441 SAMN37819516-rid19827953.denovo.33, whole genome shotgun sequence	39315..40175	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQFTG010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021441 SAMN37819516-rid19827953.denovo.33, whole genome shotgun sequence	39315..40175	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	DAQFTG010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021441 SAMN37819516-rid19827953.guided.60, whole genome shotgun sequence	3945..4805	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQFTG010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021441 SAMN37819516-rid19827953.guided.60, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQFTG010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021441 SAMN37819516-rid19827953.guided.60, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQFTG010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021441 SAMN37819516-rid19827953.guided.60, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQFTG010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021441 SAMN37819516-rid19827953.guided.60, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFTG010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021441 SAMN37819516-rid19827953.denovo.32, whole genome shotgun sequence	40531..41173	enterobacteriales	IncFII(S)	100	262 / 262	DAQFTG010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021441 SAMN37819516-rid19827953.denovo.57, whole genome shotgun sequence	3419..3680		enterobacteriales	IncX1	98.66	374 / 374	DAQFTG010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021441 SAMN37819516-rid19827953.denovo.33, whole genome shotgun sequence	901..1274																																									avrA	DAQFTG010000014.1	43598..44467	99.54	870	0						
GCA_032726255.1_PDT001939978.1_genomic.fna	Salmonella_enterica	0.5231	37.716 KB	38	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFTH010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048567 SAMN37820071-rid19827923.denovo.073, whole genome shotgun sequence	11313..11750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFTH010000256.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048567 SAMN37820071-rid19827923.guided.114, whole genome shotgun sequence	14129..14566	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFTH010000160.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048567 SAMN37820071-rid19827923.denovo.163, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQFTH010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048567 SAMN37820071-rid19827923.denovo.006, whole genome shotgun sequence	48417..49059		enterobacteriales	IncFII(S)	100	262 / 262	DAQFTH010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048567 SAMN37820071-rid19827923.denovo.006, whole genome shotgun sequence	64144..64405																																									avrA	DAQFTH010000025.1	43816..44685	99.885	870	0						
GCA_032726275.1_PDT001939968.1_genomic.fna	Salmonella_enterica	0.522	93.844 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFTI010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048704 SAMN37820080-rid19827913.denovo.14, whole genome shotgun sequence	52486..52923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFTI010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048704 SAMN37820080-rid19827913.guided.59, whole genome shotgun sequence	10244..10681	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFTI010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048704 SAMN37820080-rid19827913.denovo.77, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQFTI010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048704 SAMN37820080-rid19827913.denovo.15, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	DAQFTI010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048704 SAMN37820080-rid19827913.denovo.15, whole genome shotgun sequence	30407..30668																																									avrA	DAQFTI010000013.1	108280..109149	99.885	870	0						
GCA_032726295.1_PDT001940130.1_genomic.fna	Salmonella_enterica	0.5217	228.287 KB	8	aroC_139,dnaN_174,hemD_68,hisD_132,purE_133,sucA_9,thrA_168	578	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_139	dnaN	100	100	dnaN_174	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_133	sucA	100	100	sucA_9	thrA	100	100	thrA_168	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQFTF010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00024989 SAMN37819589-rid19826533.denovo.04, whole genome shotgun sequence	145761..146198	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQFTF010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00024989 SAMN37819589-rid19826533.guided.25, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFTF010000007.1	138900..139769	99.195	870	0						
GCA_032726315.1_PDT001939948.1_genomic.fna	Salmonella_enterica	0.5216	160.438 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFTJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048998 SAMN37820098-rid19801173.denovo.01, whole genome shotgun sequence	145401..145838	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFTJ010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048998 SAMN37820098-rid19801173.guided.29, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFTJ010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048998 SAMN37820098-rid19801173.denovo.18, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	DAQFTJ010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048998 SAMN37820098-rid19801173.denovo.18, whole genome shotgun sequence	64139..64400																																																avrA	DAQFTJ010000005.1	108331..109200	99.885	870	0						
GCA_032726335.1_PDT001939938.1_genomic.fna	Salmonella_enterica	0.5209	269.025 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFTK010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028347 SAMN37819646-rid19801163.denovo.03, whole genome shotgun sequence	242119..242556	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFTK010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028347 SAMN37819646-rid19801163.guided.19, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFTK010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028347 SAMN37819646-rid19801163.denovo.43, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFTK010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028347 SAMN37819646-rid19801163.denovo.23, whole genome shotgun sequence	36764..37406		enterobacteriales	IncFII(S)	100	262 / 262	DAQFTK010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028347 SAMN37819646-rid19801163.denovo.23, whole genome shotgun sequence	51789..52050																																									avrA	DAQFTK010000008.1	115411..116280	99.54	870	0						
GCA_032726355.1_PDT001939936.1_genomic.fna	Salmonella_enterica	0.5205	215.717 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFTL010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021598 SAMN37819522-rid19803783.denovo.03, whole genome shotgun sequence	46433..46870	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFTL010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021598 SAMN37819522-rid19803783.guided.21, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	DAQFTL010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021598 SAMN37819522-rid19803783.denovo.44, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQFTL010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021598 SAMN37819522-rid19803783.guided.45, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFTL010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021598 SAMN37819522-rid19803783.denovo.29, whole genome shotgun sequence	40531..41173	enterobacteriales	IncFII(S)	100	262 / 262	DAQFTL010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021598 SAMN37819522-rid19803783.denovo.42, whole genome shotgun sequence	3420..3681		enterobacteriales	IncX1	95.76	377 / 377	DAQFTL010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021598 SAMN37819522-rid19803783.denovo.31, whole genome shotgun sequence	4749..5125																																									avrA	DAQFTL010000006.1	115327..116196	99.54	870	0						
GCA_032726375.1_PDT001939903.1_genomic.fna	Salmonella_enterica	0.5205	110.202 KB	15	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFTN010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040197 SAMN37819764-rid19827903.denovo.46, whole genome shotgun sequence	20211..20648	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFTN010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040197 SAMN37819764-rid19827903.guided.40, whole genome shotgun sequence	24989..25426	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	DAQFTN010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040197 SAMN37819764-rid19827903.denovo.38, whole genome shotgun sequence	5285..6145	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQFTN010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040197 SAMN37819764-rid19827903.denovo.38, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQFTN010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040197 SAMN37819764-rid19827903.denovo.38, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQFTN010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040197 SAMN37819764-rid19827903.denovo.38, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQFTN010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040197 SAMN37819764-rid19827903.denovo.38, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	DAQFTN010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040197 SAMN37819764-rid19827903.guided.68, whole genome shotgun sequence	3945..4805	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQFTN010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040197 SAMN37819764-rid19827903.guided.68, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQFTN010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040197 SAMN37819764-rid19827903.guided.68, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQFTN010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040197 SAMN37819764-rid19827903.guided.68, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQFTN010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040197 SAMN37819764-rid19827903.guided.68, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFTN010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040197 SAMN37819764-rid19827903.denovo.35, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQFTN010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040197 SAMN37819764-rid19827903.denovo.62, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	98.66	374 / 374	DAQFTN010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040197 SAMN37819764-rid19827903.denovo.38, whole genome shotgun sequence	11911..12284																																									avrA	DAQFTN010000010.1	43615..44484	99.54	870	0						
GCA_032726395.1_PDT001939933.1_genomic.fna	Salmonella_enterica	0.5203	170.069 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFTM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028366 SAMN37819650-rid19823593.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFTM010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028366 SAMN37819650-rid19823593.guided.25, whole genome shotgun sequence	7360..7797	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFTM010000002.1	149541..150410	99.77	870	0						
GCA_032726415.1_PDT001939911.1_genomic.fna	Salmonella_enterica	0.5226	136.656 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFTO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00038972 SAMN37819757-rid19826453.denovo.01, whole genome shotgun sequence	232608..233045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFTO010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00038972 SAMN37819757-rid19826453.guided.15, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFTO010000004.1	124013..124882	99.77	870	0						
GCA_032726435.1_PDT001939883.1_genomic.fna	Salmonella_enterica	0.5201	320.087 KB	7	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQFTP010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00041111 SAMN37819782-rid19801113.denovo.02, whole genome shotgun sequence	312431..312868	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQFTP010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00041111 SAMN37819782-rid19801113.guided.22, whole genome shotgun sequence	22..459	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	DAQFTP010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00041111 SAMN37819782-rid19801113.denovo.07, whole genome shotgun sequence	166467..166889	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQFTP010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00041111 SAMN37819782-rid19801113.guided.11, whole genome shotgun sequence	153240..153662	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFTP010000008.1	174496..175365	99.54	870	0						
GCA_032726455.1_PDT001939875.1_genomic.fna	Salmonella_enterica	0.5212	155.311 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFTQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045717 SAMN37819876-rid19794273.denovo.01, whole genome shotgun sequence	145237..145674	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFTQ010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045717 SAMN37819876-rid19794273.guided.31, whole genome shotgun sequence	19567..20004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFTQ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045717 SAMN37819876-rid19794273.denovo.13, whole genome shotgun sequence	48432..49074	enterobacteriales	IncFII(S)	100	262 / 262	DAQFTQ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045717 SAMN37819876-rid19794273.denovo.13, whole genome shotgun sequence	64159..64420																																																avrA	DAQFTQ010000005.1	60982..61851	99.885	870	0						
GCA_032726475.1_PDT001934965.1_genomic.fna	Salmonella_enterica	0.5211	261.48 KB	6	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNWHB010000002.1 Salmonella enterica strain PNUSAS391272 SAMN37813372-rid19787413.denovo.02, whole genome shotgun sequence	455747..456184	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNWHB010000038.1 Salmonella enterica strain PNUSAS391272 SAMN37813372-rid19787413.guided.28, whole genome shotgun sequence	4836..5273	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWHB010000001.1	568757..569626	99.425	870	0						
GCA_032726855.1_PDT001790201.1_genomic.fna	Salmonella_enterica	0.5214	379.231 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWHH010000010.1 Salmonella enterica strain PNUSAS358307 SAMN35978597-rid18553873.denovo.10, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWHH010000034.1 Salmonella enterica strain PNUSAS358307 SAMN35978597-rid18553873.guided.26, whole genome shotgun sequence	7632..8069	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNWHH010000018.1 Salmonella enterica strain PNUSAS358307 SAMN35978597-rid18553873.denovo.18, whole genome shotgun sequence	34957..35490																																																						avrA	ABNWHH010000002.1	177792..178658	98.966	870	0						
GCA_032726875.1_PDT001790202.1_genomic.fna	Salmonella_enterica	0.5212	408.474 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWHD010000001.1 Salmonella enterica strain PNUSAS358303 SAMN35978594-rid18553883.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWHD010000037.1 Salmonella enterica strain PNUSAS358303 SAMN35978594-rid18553883.guided.27, whole genome shotgun sequence	3514..3951	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	262 / 262	ABNWHD010000027.1 Salmonella enterica strain PNUSAS358303 SAMN35978594-rid18553883.denovo.30, whole genome shotgun sequence	3330..3591																																																						avrA	ABNWHD010000002.1	585484..586353	99.54	870	0						
GCA_032726895.1_PDT001790198.1_genomic.fna	Salmonella_enterica	0.5222	354.316 KB	5	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_19,thrA_12	582	8:z4,z23:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	z4,z23	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Chailey		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWHG010000001.1 Salmonella enterica strain PNUSAS358308 SAMN35978595-rid18553843.denovo.01, whole genome shotgun sequence	487972..488409	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWHG010000026.1 Salmonella enterica strain PNUSAS358308 SAMN35978595-rid18553843.guided.16, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWHG010000007.1	140164..141033	99.655	870	0						
GCA_032726915.1_PDT001790200.1_genomic.fna	Salmonella_enterica	0.5226	353.323 KB	6	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_19,thrA_12	582	8:z4,z23:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	z4,z23	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Chailey		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWHE010000001.1 Salmonella enterica strain PNUSAS358305 SAMN35978592-rid18553863.denovo.01, whole genome shotgun sequence	487972..488409	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWHE010000029.1 Salmonella enterica strain PNUSAS358305 SAMN35978592-rid18553863.guided.21, whole genome shotgun sequence	2972..3409	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWHE010000007.1	140164..141032	99.425	870	0						
GCA_032726935.1_PDT001790199.1_genomic.fna	Salmonella_enterica	0.522	617.55 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWHF010000001.1 Salmonella enterica strain PNUSAS358311 SAMN35978589-rid18553853.denovo.01, whole genome shotgun sequence	144936..145373	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWHF010000020.1 Salmonella enterica strain PNUSAS358311 SAMN35978589-rid18553853.guided.16, whole genome shotgun sequence	8005..8442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWHF010000006.1	149834..150703	99.54	870	0						
GCA_032726955.1_PDT001790197.1_genomic.fna	Salmonella_enterica	0.5204	489.494 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWHI010000001.1 Salmonella enterica strain PNUSAS358306 SAMN35978598-rid18553833.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWHI010000026.1 Salmonella enterica strain PNUSAS358306 SAMN35978598-rid18553833.guided.18, whole genome shotgun sequence	7748..8185	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWHI010000017.1 Salmonella enterica strain PNUSAS358306 SAMN35978598-rid18553833.denovo.19, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABNWHI010000018.1 Salmonella enterica strain PNUSAS358306 SAMN35978598-rid18553833.denovo.21, whole genome shotgun sequence	3404..3665		enterobacteriales	IncX1	98.93	374 / 374	ABNWHI010000013.1 Salmonella enterica strain PNUSAS358306 SAMN35978598-rid18553833.denovo.14, whole genome shotgun sequence	32028..32401																																									avrA	ABNWHI010000002.1	553578..554447	99.54	870	0						
GCA_032726975.1_PDT001790196.1_genomic.fna	Salmonella_enterica	0.5203	291.448 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWHJ010000001.1 Salmonella enterica strain PNUSAS358300 SAMN35978591-rid18553823.denovo.01, whole genome shotgun sequence	462183..462620	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWHJ010000039.1 Salmonella enterica strain PNUSAS358300 SAMN35978591-rid18553823.guided.27, whole genome shotgun sequence	439..876	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.29	140 / 142	ABNWHJ010000019.1 Salmonella enterica strain PNUSAS358300 SAMN35978591-rid18553823.denovo.19, whole genome shotgun sequence	71261..71400																																																						avrA	ABNWHJ010000003.1	187194..188063	99.195	870	0						
GCA_032726995.1_PDT001790195.1_genomic.fna	Salmonella_enterica	0.5206	478.725 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWHK010000001.1 Salmonella enterica strain PNUSAS358312 SAMN35978590-rid18553813.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWHK010000033.1 Salmonella enterica strain PNUSAS358312 SAMN35978590-rid18553813.guided.30, whole genome shotgun sequence	1011..1448	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWHK010000019.1 Salmonella enterica strain PNUSAS358312 SAMN35978590-rid18553813.denovo.21, whole genome shotgun sequence	1994..2636	enterobacteriales	IncFII(S)	100	262 / 262	ABNWHK010000020.1 Salmonella enterica strain PNUSAS358312 SAMN35978590-rid18553813.denovo.22, whole genome shotgun sequence	2825..3086		enterobacteriales	IncX1	98.93	374 / 374	ABNWHK010000014.1 Salmonella enterica strain PNUSAS358312 SAMN35978590-rid18553813.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNWHK010000002.1	553680..554549	99.54	870	0						
GCA_032727035.1_PDT001790192.1_genomic.fna	Salmonella_enterica	0.5223	362.324 KB	4	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWHM010000001.1 Salmonella enterica strain PNUSAS358310 SAMN35978593-rid18553783.denovo.01, whole genome shotgun sequence	394358..394795	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWHM010000034.1 Salmonella enterica strain PNUSAS358310 SAMN35978593-rid18553783.guided.27, whole genome shotgun sequence	1515..1952	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032727055.1_PDT001790190.1_genomic.fna	Salmonella_enterica	0.5202	403.653 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	5	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,qnrS1,qnrS1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWHP010000001.1 Salmonella enterica strain PNUSAS358302 SAMN35978587-rid18553763.denovo.01, whole genome shotgun sequence	486124..486561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWHP010000035.1 Salmonella enterica strain PNUSAS358302 SAMN35978587-rid18553763.guided.26, whole genome shotgun sequence	21754..22191	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNWHP010000004.1 Salmonella enterica strain PNUSAS358302 SAMN35978587-rid18553763.denovo.04, whole genome shotgun sequence	388916..389338	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNWHP010000038.1 Salmonella enterica strain PNUSAS358302 SAMN35978587-rid18553763.guided.31, whole genome shotgun sequence	2987..3409	Fosfomycin	LAPJ01000014	qnrS1	100	657/657	ABNWHP010000019.1 Salmonella enterica strain PNUSAS358302 SAMN35978587-rid18553763.denovo.19, whole genome shotgun sequence	23886..24542	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNWHP010000036.1 Salmonella enterica strain PNUSAS358302 SAMN35978587-rid18553763.guided.29, whole genome shotgun sequence	1008..1664	Ciprofloxacin	AB187515	tet(A)	100	1200/1200	ABNWHP010000019.1 Salmonella enterica strain PNUSAS358302 SAMN35978587-rid18553763.denovo.19, whole genome shotgun sequence	19276..20475	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWHP010000036.1 Salmonella enterica strain PNUSAS358302 SAMN35978587-rid18553763.guided.29, whole genome shotgun sequence	5075..6274	Doxycycline, Tetracycline	AJ517790	dfrA1	100	474/474	ABNWHP010000019.1 Salmonella enterica strain PNUSAS358302 SAMN35978587-rid18553763.denovo.19, whole genome shotgun sequence	21708..22181	Trimethoprim	X00926	dfrA1	100	474/474	ABNWHP010000036.1 Salmonella enterica strain PNUSAS358302 SAMN35978587-rid18553763.guided.29, whole genome shotgun sequence	3369..3842	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWHP010000002.1	122301..123170	99.195	870	0						
GCA_032727075.1_PDT001790194.1_genomic.fna	Salmonella_enterica	0.5213	406.409 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWHL010000001.1 Salmonella enterica strain PNUSAS358304 SAMN35978588-rid18553803.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWHL010000033.1 Salmonella enterica strain PNUSAS358304 SAMN35978588-rid18553803.guided.21, whole genome shotgun sequence	5089..5526	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWHL010000018.1 Salmonella enterica strain PNUSAS358304 SAMN35978588-rid18553803.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNWHL010000020.1 Salmonella enterica strain PNUSAS358304 SAMN35978588-rid18553803.denovo.23, whole genome shotgun sequence	3415..3676																																																avrA	ABNWHL010000002.1	585348..586217	99.54	870	0						
GCA_032727115.1_PDT001790193.1_genomic.fna	Salmonella_enterica	0.522	103.472 KB	16	aroC_71,dnaN_65,hemD_67,hisD_75,purE_73,sucA_9,thrA_64	217	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),p0111	aroC	100	100	aroC_71	dnaN	100	100	dnaN_65	hemD	100	100	hemD_67	hisD	100	100	hisD_75	purE	100	100	purE_73	sucA	100	100	sucA_9	thrA	100	100	thrA_64	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWHQ010000001.1 Salmonella enterica strain PNUSAS358301 SAMN35978586-rid18553793.denovo.01, whole genome shotgun sequence	63244..63681	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWHQ010000095.1 Salmonella enterica strain PNUSAS358301 SAMN35978586-rid18553793.guided.61, whole genome shotgun sequence	12088..12525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNWHQ010000080.1 Salmonella enterica strain PNUSAS358301 SAMN35978586-rid18553793.denovo.82, whole genome shotgun sequence	547..675	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNWHQ010000082.1 Salmonella enterica strain PNUSAS358301 SAMN35978586-rid18553793.denovo.85, whole genome shotgun sequence	667..797		enterobacteriales	p0111	98.87	885 / 885	ABNWHQ010000044.1 Salmonella enterica strain PNUSAS358301 SAMN35978586-rid18553793.denovo.44, whole genome shotgun sequence	338..1222																																									avrA	ABNWHQ010000025.1	39618..40487	99.195	870	0						
GCA_032727135.1_PDT001790191.1_genomic.fna	Salmonella_enterica	0.5205	308.091 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncFII(pCoo)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWHO010000011.1 Salmonella enterica strain PNUSAS358309 SAMN35978596-rid18553773.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWHO010000046.1 Salmonella enterica strain PNUSAS358309 SAMN35978596-rid18553773.guided.34, whole genome shotgun sequence	3326..3763	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNWHO010000020.1 Salmonella enterica strain PNUSAS358309 SAMN35978596-rid18553773.denovo.20, whole genome shotgun sequence	34957..35490	enterobacteriales	IncFII(pCoo)	96.95	262 / 262	ABNWHO010000016.1 Salmonella enterica strain PNUSAS358309 SAMN35978596-rid18553773.denovo.16, whole genome shotgun sequence	33830..34090																																																avrA	ABNWHO010000001.1	153511..154377	98.966	870	0						
GCA_032727525.1_PDT001788421.1_genomic.fna	Salmonella_enterica	0.5209	325.75 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWIN010000001.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.denovo.01, whole genome shotgun sequence	159439..159876	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWIN010000026.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.denovo.26, whole genome shotgun sequence	31733..32569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNWIN010000026.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.denovo.26, whole genome shotgun sequence	30930..31733	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNWIN010000038.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.denovo.45, whole genome shotgun sequence	137..952	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	V00359	aph(6)-Id	100	837/837	ABNWIN010000043.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.guided.27, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNWIN010000043.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.guided.27, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNWIN010000045.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.guided.32, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNWIN010000049.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.guided.44, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	V00359	blaCMY-2	100	1146/1146	ABNWIN010000026.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.denovo.26, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNWIN010000034.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.denovo.37, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNWIN010000034.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.denovo.37, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNWIN010000034.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.denovo.37, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNWIN010000043.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.guided.27, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNWIN010000048.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.guided.41, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNWIN010000048.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.guided.41, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNWIN010000048.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.guided.41, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNWIN010000026.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.denovo.26, whole genome shotgun sequence	35705..36918	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNWIN010000046.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.guided.38, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNWIN010000026.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.denovo.26, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNWIN010000043.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.guided.27, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNWIN010000026.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.denovo.26, whole genome shotgun sequence	33830..35104	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNWIN010000043.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.guided.27, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																														gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNWIN010000024.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.denovo.24, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNWIN010000021.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.denovo.21, whole genome shotgun sequence	16913..17172		enterobacteriales	IncX1	98.66	374 / 374	ABNWIN010000021.1 Salmonella enterica strain PNUSAS358292 SAMN35889946-rid18545163.denovo.21, whole genome shotgun sequence	52766..53139																																									avrA	ABNWIN010000005.1	173549..174417	99.54	870	0						
GCA_032727555.1_PDT001788420.1_genomic.fna	Salmonella_enterica	0.5218	503.995 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncR,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWIL010000001.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.denovo.01, whole genome shotgun sequence	172159..172596	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNWIL010000026.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.denovo.30, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNWIL010000037.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.guided.22, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNWIL010000041.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.guided.33, whole genome shotgun sequence	2772..3551	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNWIL010000026.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.denovo.30, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNWIL010000041.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.guided.33, whole genome shotgun sequence	1776..2642	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNWIL010000024.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.denovo.26, whole genome shotgun sequence	6582..7487	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNWIL010000038.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.guided.27, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNWIL010000023.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.denovo.25, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNWIL010000040.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.guided.32, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNWIL010000026.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.denovo.30, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNWIL010000041.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.guided.33, whole genome shotgun sequence	860..1516	Ciprofloxacin	AY070235	sul1	100	840/840	ABNWIL010000024.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.denovo.26, whole genome shotgun sequence	432..1271	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWIL010000043.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.guided.36, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNWIL010000023.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.denovo.25, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNWIL010000042.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.guided.34, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNWIL010000023.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.denovo.25, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNWIL010000042.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.guided.34, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNWIL010000020.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.denovo.20, whole genome shotgun sequence	14973..15223	enterobacteriales	IncX1	94.92	374 / 374	ABNWIL010000014.1 Salmonella enterica strain PNUSAS358295 SAMN35889948-rid18545153.denovo.14, whole genome shotgun sequence	13796..14169																																																avrA	ABNWIL010000002.1	553473..554342	99.77	870	0						
GCA_032727575.1_PDT001788419.1_genomic.fna	Salmonella_enterica	0.5211	364.083 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNWIK010000001.1 Salmonella enterica strain PNUSAS358289 SAMN35889940-rid18545143.denovo.01, whole genome shotgun sequence	563827..564264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNWIK010000029.1 Salmonella enterica strain PNUSAS358289 SAMN35889940-rid18545143.guided.21, whole genome shotgun sequence	3972..4409	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWIK010000012.1	140470..141338	99.195	870	0						
GCA_032727595.1_PDT001788417.1_genomic.fna	Salmonella_enterica	0.5208	277.605 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWIO010000004.1 Salmonella enterica strain PNUSAS358299 SAMN35889944-rid18545123.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWIO010000047.1 Salmonella enterica strain PNUSAS358299 SAMN35889944-rid18545123.guided.33, whole genome shotgun sequence	10869..11306	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNWIO010000022.1 Salmonella enterica strain PNUSAS358299 SAMN35889944-rid18545123.denovo.23, whole genome shotgun sequence	44678..45320	enterobacteriales	IncFII(S)	100	262 / 262	ABNWIO010000022.1 Salmonella enterica strain PNUSAS358299 SAMN35889944-rid18545123.denovo.23, whole genome shotgun sequence	29332..29593		enterobacteriales	IncI2(Delta)	100	316 / 316	ABNWIO010000019.1 Salmonella enterica strain PNUSAS358299 SAMN35889944-rid18545123.denovo.20, whole genome shotgun sequence	28019..28334																																									avrA	ABNWIO010000001.1	446730..447598	100	869	0						
GCA_032727615.1_PDT001788418.1_genomic.fna	Salmonella_enterica	0.5207	264.798 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWIM010000001.1 Salmonella enterica strain PNUSAS358294 SAMN35889942-rid18545133.denovo.01, whole genome shotgun sequence	17246..17683	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWIM010000039.1 Salmonella enterica strain PNUSAS358294 SAMN35889942-rid18545133.guided.34, whole genome shotgun sequence	4727..5164	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWIM010000030.1 Salmonella enterica strain PNUSAS358294 SAMN35889942-rid18545133.denovo.30, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNWIM010000031.1 Salmonella enterica strain PNUSAS358294 SAMN35889942-rid18545133.denovo.31, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNWIM010000027.1 Salmonella enterica strain PNUSAS358294 SAMN35889942-rid18545133.denovo.27, whole genome shotgun sequence	32011..32384																																									avrA	ABNWIM010000007.1	175109..175978	99.54	870	0						
GCA_032727635.1_PDT001788416.1_genomic.fna	Salmonella_enterica	0.5214	268.236 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWIP010000002.1 Salmonella enterica strain PNUSAS358290 SAMN35889941-rid18545113.denovo.02, whole genome shotgun sequence	100611..101048	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWIP010000030.1 Salmonella enterica strain PNUSAS358290 SAMN35889941-rid18545113.guided.26, whole genome shotgun sequence	803..1240	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWIP010000025.1 Salmonella enterica strain PNUSAS358290 SAMN35889941-rid18545113.denovo.25, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNWIP010000026.1 Salmonella enterica strain PNUSAS358290 SAMN35889941-rid18545113.denovo.28, whole genome shotgun sequence	3392..3653																																																avrA	ABNWIP010000001.1	553635..554504	99.54	870	0						
GCA_032727655.1_PDT001788415.1_genomic.fna	Salmonella_enterica	0.5212	478.789 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,Col156,ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWIQ010000001.1 Salmonella enterica strain PNUSAS358297 SAMN35889947-rid18545103.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWIQ010000028.1 Salmonella enterica strain PNUSAS358297 SAMN35889947-rid18545103.guided.16, whole genome shotgun sequence	14161..14598	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNWIQ010000019.1 Salmonella enterica strain PNUSAS358297 SAMN35889947-rid18545103.denovo.21, whole genome shotgun sequence	967..1118	enterobacteriales	Col156	96.1	154 / 154	ABNWIQ010000020.1 Salmonella enterica strain PNUSAS358297 SAMN35889947-rid18545103.denovo.22, whole genome shotgun sequence	483..636		enterobacteriales	ColpVC	98.96	193 / 193	ABNWIQ010000021.1 Salmonella enterica strain PNUSAS358297 SAMN35889947-rid18545103.denovo.24, whole genome shotgun sequence	805..997		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWIQ010000016.1 Salmonella enterica strain PNUSAS358297 SAMN35889947-rid18545103.denovo.17, whole genome shotgun sequence	6820..7462		enterobacteriales	IncFII(S)	100	262 / 262	ABNWIQ010000013.1 Salmonella enterica strain PNUSAS358297 SAMN35889947-rid18545103.denovo.13, whole genome shotgun sequence	5032..5293																											avrA	ABNWIQ010000002.1	585348..586217	99.54	870	0						
GCA_032727675.1_PDT001788414.1_genomic.fna	Salmonella_enterica	0.5212	370.51 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNWIR010000001.1 Salmonella enterica strain PNUSAS358298 SAMN35889945-rid18545093.denovo.01, whole genome shotgun sequence	787334..787771	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNWIR010000027.1 Salmonella enterica strain PNUSAS358298 SAMN35889945-rid18545093.guided.22, whole genome shotgun sequence	8256..8693	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNWIR010000021.1 Salmonella enterica strain PNUSAS358298 SAMN35889945-rid18545093.denovo.24, whole genome shotgun sequence	239..369																																																						avrA	ABNWIR010000002.1	140114..140983	99.425	870	0						
GCA_032727695.1_PDT001788413.1_genomic.fna	Salmonella_enterica	0.5226	354.125 KB	4	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWIS010000001.1 Salmonella enterica strain PNUSAS358296 SAMN35889943-rid18545083.denovo.01, whole genome shotgun sequence	1111707..1112144	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWIS010000024.1 Salmonella enterica strain PNUSAS358296 SAMN35889943-rid18545083.denovo.26, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWIS010000024.1 Salmonella enterica strain PNUSAS358296 SAMN35889943-rid18545083.denovo.26, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWIS010000024.1 Salmonella enterica strain PNUSAS358296 SAMN35889943-rid18545083.denovo.26, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWIS010000024.1 Salmonella enterica strain PNUSAS358296 SAMN35889943-rid18545083.denovo.26, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWIS010000024.1 Salmonella enterica strain PNUSAS358296 SAMN35889943-rid18545083.denovo.26, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNWIS010000034.1 Salmonella enterica strain PNUSAS358296 SAMN35889943-rid18545083.guided.22, whole genome shotgun sequence	8419..8856	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWIS010000038.1 Salmonella enterica strain PNUSAS358296 SAMN35889943-rid18545083.guided.31, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWIS010000038.1 Salmonella enterica strain PNUSAS358296 SAMN35889943-rid18545083.guided.31, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWIS010000038.1 Salmonella enterica strain PNUSAS358296 SAMN35889943-rid18545083.guided.31, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWIS010000038.1 Salmonella enterica strain PNUSAS358296 SAMN35889943-rid18545083.guided.31, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWIS010000038.1 Salmonella enterica strain PNUSAS358296 SAMN35889943-rid18545083.guided.31, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNWIS010000025.1 Salmonella enterica strain PNUSAS358296 SAMN35889943-rid18545083.denovo.28, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWIS010000036.1 Salmonella enterica strain PNUSAS358296 SAMN35889943-rid18545083.guided.27, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNWIS010000029.1 Salmonella enterica strain PNUSAS358296 SAMN35889943-rid18545083.denovo.34, whole genome shotgun sequence	805..997																																																						avrA	ABNWIS010000009.1	39546..40415	99.655	870	0						
GCA_032727715.1_PDT001788412.1_genomic.fna	Salmonella_enterica	0.522	380.04 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNWIU010000006.1 Salmonella enterica strain PNUSAS358293 SAMN35889939-rid18545073.denovo.06, whole genome shotgun sequence	144784..145221	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNWIU010000028.1 Salmonella enterica strain PNUSAS358293 SAMN35889939-rid18545073.guided.24, whole genome shotgun sequence	748..1185	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWIU010000001.1	563797..564666	99.77	870	0						
GCA_032727775.1_PDT001788411.1_genomic.fna	Salmonella_enterica	0.5205	672.29 KB	2	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWIT010000001.1 Salmonella enterica strain PNUSAS358291 SAMN35889938-rid18545063.denovo.01, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWIT010000021.1 Salmonella enterica strain PNUSAS358291 SAMN35889938-rid18545063.guided.18, whole genome shotgun sequence	3589..4026	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032728105.1_PDT001940489.1_genomic.fna	Salmonella_enterica	0.5209	401.794 KB	5	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWJL010000001.1 Salmonella enterica strain PNUSAS390821 SAMN37831422-rid19836263.denovo.01, whole genome shotgun sequence	656824..657261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWJL010000067.1 Salmonella enterica strain PNUSAS390821 SAMN37831422-rid19836263.guided.46, whole genome shotgun sequence	197..634	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNWJL010000018.1 Salmonella enterica strain PNUSAS390821 SAMN37831422-rid19836263.denovo.18, whole genome shotgun sequence	17427..18069																																																						avrA	ABNWJL010000002.1	599465..600333	99.655	870	0						
GCA_032728145.1_PDT001940486.1_genomic.fna	Salmonella_enterica	0.5212	376.734 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNWJK010000001.1 Salmonella enterica strain PNUSAS390812 SAMN37831423-rid19836233.denovo.01, whole genome shotgun sequence	239429..239866	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNWJK010000035.1 Salmonella enterica strain PNUSAS390812 SAMN37831423-rid19836233.guided.26, whole genome shotgun sequence	278..715	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNWJK010000020.1 Salmonella enterica strain PNUSAS390812 SAMN37831423-rid19836233.denovo.20, whole genome shotgun sequence	37286..37928	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNWJK010000020.1 Salmonella enterica strain PNUSAS390812 SAMN37831423-rid19836233.denovo.20, whole genome shotgun sequence	10978..11204																																																											
GCA_032728165.1_PDT001940456.1_genomic.fna	Salmonella_enterica	0.5208	335.02 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNWJM010000001.1 Salmonella enterica strain PNUSAS390808 SAMN37831070-rid19835933.denovo.01, whole genome shotgun sequence	619874..620311	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNWJM010000058.1 Salmonella enterica strain PNUSAS390808 SAMN37831070-rid19835933.guided.29, whole genome shotgun sequence	2589..3026	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNWJM010000021.1 Salmonella enterica strain PNUSAS390808 SAMN37831070-rid19835933.denovo.21, whole genome shotgun sequence	12701..13343																																																						avrA	ABNWJM010000008.1	140535..141403	99.425	870	0						
GCA_032728185.1_PDT001940071.1_genomic.fna	Salmonella_enterica	0.5216	110.858 KB	15	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87G	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFUK010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021911 SAMN37819530-rid19829313.denovo.05, whole genome shotgun sequence	16044..16481	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFUK010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021911 SAMN37819530-rid19829313.guided.58, whole genome shotgun sequence	2373..2810	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFUK010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021911 SAMN37819530-rid19829313.denovo.36, whole genome shotgun sequence	35857..36499	enterobacteriales	IncFII(S)	100	262 / 262	DAQFUK010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021911 SAMN37819530-rid19829313.denovo.66, whole genome shotgun sequence	4185..4446																																																avrA	DAQFUK010000004.1	115369..116238	99.54	870	0						
GCA_032728205.1_PDT001940284.1_genomic.fna	Salmonella_enterica	0.5207	115.858 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFUJ010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051097 SAMN37820138-rid19828003.denovo.05, whole genome shotgun sequence	145435..145872	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFUJ010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051097 SAMN37820138-rid19828003.guided.27, whole genome shotgun sequence	7361..7798	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFUJ010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051097 SAMN37820138-rid19828003.denovo.18, whole genome shotgun sequence	48414..49056	enterobacteriales	IncFII(S)	100	262 / 262	DAQFUJ010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051097 SAMN37820138-rid19828003.denovo.18, whole genome shotgun sequence	64141..64402		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFUJ010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051097 SAMN37820138-rid19828003.denovo.20, whole genome shotgun sequence	15833..15969																																									avrA	DAQFUJ010000013.1	39625..40494	99.885	870	0						
GCA_032728225.1_PDT001940371.1_genomic.fna	Salmonella_enterica	0.5214	95.295 KB	15	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFUI010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00042641 SAMN37819801-rid19826603.denovo.21, whole genome shotgun sequence	20206..20643	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFUI010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00042641 SAMN37819801-rid19826603.guided.34, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFUI010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00042641 SAMN37819801-rid19826603.denovo.38, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQFUI010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00042641 SAMN37819801-rid19826603.denovo.65, whole genome shotgun sequence	3414..3675																																																avrA	DAQFUI010000003.1	115317..116186	99.54	870	0						
GCA_032728245.1_PDT001940069.1_genomic.fna	Salmonella_enterica	0.5212	197.853 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFUL010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00035604 SAMN37819729-rid19829303.denovo.03, whole genome shotgun sequence	52294..52731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFUL010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00035604 SAMN37819729-rid19829303.guided.23, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFUL010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00035604 SAMN37819729-rid19829303.denovo.27, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	DAQFUL010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00035604 SAMN37819729-rid19829303.denovo.38, whole genome shotgun sequence	3423..3684																																																avrA	DAQFUL010000007.1	140720..141589	99.54	870	0						
GCA_032728265.1_PDT001939893.1_genomic.fna	Salmonella_enterica	0.5213	115.364 KB	15	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFUM010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040825 SAMN37819773-rid19827883.denovo.24, whole genome shotgun sequence	17795..18232	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQFUM010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040825 SAMN37819773-rid19827883.denovo.88, whole genome shotgun sequence	86..916	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQFUM010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040825 SAMN37819773-rid19827883.denovo.88, whole genome shotgun sequence	922..1725	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	DAQFUM010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040825 SAMN37819773-rid19827883.guided.63, whole genome shotgun sequence	1981..2418	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQFUM010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040825 SAMN37819773-rid19827883.guided.86, whole genome shotgun sequence	842..1672	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQFUM010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040825 SAMN37819773-rid19827883.guided.86, whole genome shotgun sequence	33..836	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQFUM010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040825 SAMN37819773-rid19827883.denovo.69, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQFUM010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040825 SAMN37819773-rid19827883.guided.70, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	DAQFUM010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040825 SAMN37819773-rid19827883.denovo.62, whole genome shotgun sequence	8341..9156	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQFUM010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040825 SAMN37819773-rid19827883.guided.73, whole genome shotgun sequence	3554..4369	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQFUM010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040825 SAMN37819773-rid19827883.denovo.78, whole genome shotgun sequence	947..2146	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQFUM010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040825 SAMN37819773-rid19827883.guided.77, whole genome shotgun sequence	988..2187	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFUM010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040825 SAMN37819773-rid19827883.denovo.41, whole genome shotgun sequence	32997..33639	enterobacteriales	IncFII(S)	100	262 / 262	DAQFUM010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040825 SAMN37819773-rid19827883.denovo.65, whole genome shotgun sequence	3420..3681		enterobacteriales	IncX1	95.76	377 / 377	DAQFUM010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040825 SAMN37819773-rid19827883.denovo.66, whole genome shotgun sequence	805..1181																																									avrA	DAQFUM010000009.1	43690..44559	99.54	870	0						
GCA_032728285.1_PDT001939832.1_genomic.fna	Salmonella_enterica	0.5217	98.928 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFUN010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046899 SAMN37820001-rid19827863.denovo.012, whole genome shotgun sequence	55685..56122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFUN010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046899 SAMN37820001-rid19827863.guided.073, whole genome shotgun sequence	9074..9511	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFUN010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046899 SAMN37820001-rid19827863.denovo.015, whole genome shotgun sequence	48413..49055	enterobacteriales	IncFII(S)	100	262 / 262	DAQFUN010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046899 SAMN37820001-rid19827863.denovo.015, whole genome shotgun sequence	64140..64401		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFUN010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046899 SAMN37820001-rid19827863.denovo.018, whole genome shotgun sequence	15829..15965																																									avrA	DAQFUN010000008.1	61079..61948	99.885	870	0						
GCA_032728305.1_PDT001939826.1_genomic.fna	Salmonella_enterica	0.5222	99.081 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_1113,thrA_2	7910	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_1113	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFUO010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046939 SAMN37820007-rid19827853.denovo.003, whole genome shotgun sequence	145129..145566	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFUO010000115.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046939 SAMN37820007-rid19827853.guided.081, whole genome shotgun sequence	5470..5907	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFUO010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046939 SAMN37820007-rid19827853.denovo.018, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQFUO010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046939 SAMN37820007-rid19827853.denovo.018, whole genome shotgun sequence	60371..60632																																																avrA	DAQFUO010000024.1	39625..40494	99.885	870	0						
GCA_032728345.1_PDT001788400.1_genomic.fna	Salmonella_enterica	0.5217	29.865 KB	48	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWJO010000010.1 Salmonella enterica strain 23LA05CL01-S1 SAMN35877078-rid18544953.denovo.010, whole genome shotgun sequence	52255..52692	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWJO010000138.1 Salmonella enterica strain 23LA05CL01-S1 SAMN35877078-rid18544953.denovo.140, whole genome shotgun sequence	5800..6636	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWJO010000138.1 Salmonella enterica strain 23LA05CL01-S1 SAMN35877078-rid18544953.denovo.140, whole genome shotgun sequence	6636..7438	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWJO010000138.1 Salmonella enterica strain 23LA05CL01-S1 SAMN35877078-rid18544953.denovo.140, whole genome shotgun sequence	6636..7439	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWJO010000138.1 Salmonella enterica strain 23LA05CL01-S1 SAMN35877078-rid18544953.denovo.140, whole genome shotgun sequence	6636..7439	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWJO010000138.1 Salmonella enterica strain 23LA05CL01-S1 SAMN35877078-rid18544953.denovo.140, whole genome shotgun sequence	6636..7439	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNWJO010000313.1 Salmonella enterica strain 23LA05CL01-S1 SAMN35877078-rid18544953.guided.168, whole genome shotgun sequence	4309..4746	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWJO010000314.1 Salmonella enterica strain 23LA05CL01-S1 SAMN35877078-rid18544953.guided.205, whole genome shotgun sequence	1332..2168	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWJO010000314.1 Salmonella enterica strain 23LA05CL01-S1 SAMN35877078-rid18544953.guided.205, whole genome shotgun sequence	530..1332	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWJO010000314.1 Salmonella enterica strain 23LA05CL01-S1 SAMN35877078-rid18544953.guided.205, whole genome shotgun sequence	529..1332	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWJO010000314.1 Salmonella enterica strain 23LA05CL01-S1 SAMN35877078-rid18544953.guided.205, whole genome shotgun sequence	529..1332	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWJO010000314.1 Salmonella enterica strain 23LA05CL01-S1 SAMN35877078-rid18544953.guided.205, whole genome shotgun sequence	529..1332	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNWJO010000164.1 Salmonella enterica strain 23LA05CL01-S1 SAMN35877078-rid18544953.denovo.166, whole genome shotgun sequence	1844..2170	enterobacteriales	IncHI2A	99.52	630 / 630	ABNWJO010000186.1 Salmonella enterica strain 23LA05CL01-S1 SAMN35877078-rid18544953.denovo.189, whole genome shotgun sequence	524..1153		enterobacteriales	IncX1	100	373 / 373	ABNWJO010000211.1 Salmonella enterica strain 23LA05CL01-S1 SAMN35877078-rid18544953.denovo.215, whole genome shotgun sequence	1870..2242																																									avrA	ABNWJO010000023.1	43528..44397	99.655	870	0						
GCA_032728425.1_PDT001788176.1_genomic.fna	Salmonella_enterica	0.5206	184.064 KB	9	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNWJS010000001.1 Salmonella enterica strain PNUSAS358182 SAMN35881289-rid18544913.denovo.01, whole genome shotgun sequence	93295..93732	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNWJS010000054.1 Salmonella enterica strain PNUSAS358182 SAMN35881289-rid18544913.guided.37, whole genome shotgun sequence	7695..8132	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNWJS010000002.1 Salmonella enterica strain PNUSAS358182 SAMN35881289-rid18544913.denovo.02, whole genome shotgun sequence	2742..3164	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNWJS010000057.1 Salmonella enterica strain PNUSAS358182 SAMN35881289-rid18544913.guided.51, whole genome shotgun sequence	283..705	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.08	131 / 131	ABNWJS010000038.1 Salmonella enterica strain PNUSAS358182 SAMN35881289-rid18544913.denovo.39, whole genome shotgun sequence	709..839																																																						avrA	ABNWJS010000005.1	39483..40352	99.655	870	0						
GCA_032728445.1_PDT001788173.1_genomic.fna	Salmonella_enterica	0.5224	263.453 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWJT010000001.1 Salmonella enterica strain PNUSAS358179 SAMN35881290-rid18544883.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.01	402/438	ABNWJT010000037.1 Salmonella enterica strain PNUSAS358179 SAMN35881290-rid18544883.guided.27, whole genome shotgun sequence	3..404	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWJT010000002.1	149828..150697	99.655	870	0						
GCA_032728505.1_PDT001788172.1_genomic.fna	Salmonella_enterica	0.5212	304.379 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWJU010000002.1 Salmonella enterica strain PNUSAS358181 SAMN35881291-rid18544873.denovo.02, whole genome shotgun sequence	162390..162827	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWJU010000054.1 Salmonella enterica strain PNUSAS358181 SAMN35881291-rid18544873.guided.24, whole genome shotgun sequence	3103..3540	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWJU010000028.1 Salmonella enterica strain PNUSAS358181 SAMN35881291-rid18544873.denovo.30, whole genome shotgun sequence	3029..3671																																																						avrA	ABNWJU010000001.1	585348..586217	99.54	870	0						
GCA_032728705.1_PDT001788129.1_genomic.fna	Salmonella_enterica	0.5212	695.947 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWJY010000001.1 Salmonella enterica strain PNUSAS358255 isolate CDPHFDLB-F15M02924-A SAMN35880913-rid18544433.denovo.01, whole genome shotgun sequence	482525..482962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWJY010000029.1 Salmonella enterica strain PNUSAS358255 isolate CDPHFDLB-F15M02924-A SAMN35880913-rid18544433.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032728725.1_PDT001788130.1_genomic.fna	Salmonella_enterica	0.5211	695.947 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWJX010000001.1 Salmonella enterica strain PNUSAS358241 isolate CDPHFDLB-F15M02914-A SAMN35880918-rid18544443.denovo.01, whole genome shotgun sequence	482525..482962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWJX010000038.1 Salmonella enterica strain PNUSAS358241 isolate CDPHFDLB-F15M02914-A SAMN35880918-rid18544443.guided.20, whole genome shotgun sequence	5746..6183	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032728785.1_PDT001788131.1_genomic.fna	Salmonella_enterica	0.521	695.947 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncQ1	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWJW010000001.1 Salmonella enterica strain PNUSAS358242 isolate CDPHFDLB-F15M02908-A SAMN35880921-rid18544453.denovo.01, whole genome shotgun sequence	482525..482962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWJW010000033.1 Salmonella enterica strain PNUSAS358242 isolate CDPHFDLB-F15M02908-A SAMN35880921-rid18544453.guided.17, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncQ1	91.26	721 / 796	ABNWJW010000018.1 Salmonella enterica strain PNUSAS358242 isolate CDPHFDLB-F15M02908-A SAMN35880921-rid18544453.denovo.21, whole genome shotgun sequence	3312..4028																																																																	
GCA_032728825.1_PDT001788128.1_genomic.fna	Salmonella_enterica	0.5203	429.91 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWKA010000001.1 Salmonella enterica strain PNUSAS358229 SAMN35880903-rid18544423.denovo.01, whole genome shotgun sequence	561490..561927	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWKA010000028.1 Salmonella enterica strain PNUSAS358229 SAMN35880903-rid18544423.guided.14, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWKA010000010.1	139798..140666	99.195	870	0						
GCA_032728845.1_PDT001788125.1_genomic.fna	Salmonella_enterica	0.5216	298.215 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWKC010000001.1 Salmonella enterica strain PNUSAS358245 isolate CDPHFDLB-F14M01371-D SAMN35880919-rid18544393.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWKC010000037.1 Salmonella enterica strain PNUSAS358245 isolate CDPHFDLB-F14M01371-D SAMN35880919-rid18544393.guided.29, whole genome shotgun sequence	2298..2735	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWKC010000002.1	371886..372755	99.31	870	0						
GCA_032728865.1_PDT001788126.1_genomic.fna	Salmonella_enterica	0.5202	478.476 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWKB010000001.1 Salmonella enterica strain PNUSAS358156 SAMN35880893-rid18544403.denovo.01, whole genome shotgun sequence	771876..772313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWKB010000028.1 Salmonella enterica strain PNUSAS358156 SAMN35880893-rid18544403.guided.14, whole genome shotgun sequence	38079..38516	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWKB010000019.1 Salmonella enterica strain PNUSAS358156 SAMN35880893-rid18544403.denovo.22, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNWKB010000021.1 Salmonella enterica strain PNUSAS358156 SAMN35880893-rid18544403.denovo.24, whole genome shotgun sequence	3405..3666		enterobacteriales	IncX1	98.93	374 / 374	ABNWKB010000015.1 Salmonella enterica strain PNUSAS358156 SAMN35880893-rid18544403.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABNWKB010000002.1	553623..554492	99.54	870	0						
GCA_032728885.1_PDT001788124.1_genomic.fna	Salmonella_enterica	0.5217	169.597 KB	10	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWKE010000019.1 Salmonella enterica strain PNUSAS358232 SAMN35880887-rid18544383.denovo.19, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWKE010000081.1 Salmonella enterica strain PNUSAS358232 SAMN35880887-rid18544383.guided.49, whole genome shotgun sequence	5416..5853	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWKE010000001.1	53320..54188	99.31	870	0						
GCA_032728905.1_PDT001788123.1_genomic.fna	Salmonella_enterica	0.521	695.947 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncQ1	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWKD010000001.1 Salmonella enterica strain PNUSAS358243 isolate CDPHFDLB-F15M02908-B SAMN35880917-rid18544373.denovo.01, whole genome shotgun sequence	482525..482962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWKD010000030.1 Salmonella enterica strain PNUSAS358243 isolate CDPHFDLB-F15M02908-B SAMN35880917-rid18544373.guided.13, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncQ1	91.26	721 / 796	ABNWKD010000017.1 Salmonella enterica strain PNUSAS358243 isolate CDPHFDLB-F15M02908-B SAMN35880917-rid18544373.denovo.19, whole genome shotgun sequence	3312..4028																																																																	
GCA_032728925.1_PDT001788122.1_genomic.fna	Salmonella_enterica	0.5209	695.947 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWKF010000001.1 Salmonella enterica strain PNUSAS358253 isolate CDPHFDLB-F15M02945-A SAMN35880912-rid18544363.denovo.01, whole genome shotgun sequence	482525..482962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNWKF010000038.1 Salmonella enterica strain PNUSAS358253 isolate CDPHFDLB-F15M02945-A SAMN35880912-rid18544363.guided.27, whole genome shotgun sequence	1786..2223	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.45	193 / 193	ABNWKF010000025.1 Salmonella enterica strain PNUSAS358253 isolate CDPHFDLB-F15M02945-A SAMN35880912-rid18544363.denovo.28, whole genome shotgun sequence	603..795																																																																	
GCA_032728945.1_PDT001788119.1_genomic.fna	Salmonella_enterica	0.5218	151.572 KB	10	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWKI010000003.1 Salmonella enterica strain PNUSAS358247 isolate CDPHFDLB-FM23-00819-A SAMN35880909-rid18544333.denovo.03, whole genome shotgun sequence	140510..140947	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWKI010000072.1 Salmonella enterica strain PNUSAS358247 isolate CDPHFDLB-FM23-00819-A SAMN35880909-rid18544333.guided.51, whole genome shotgun sequence	486..923	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNWKI010000049.1 Salmonella enterica strain PNUSAS358247 isolate CDPHFDLB-FM23-00819-A SAMN35880909-rid18544333.denovo.52, whole genome shotgun sequence	547..675																																																						avrA	ABNWKI010000001.1	504156..505025	99.195	870	0						
GCA_032728955.1_PDT001788120.1_genomic.fna	Salmonella_enterica	0.5212	218.291 KB	7	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWKH010000001.1 Salmonella enterica strain PNUSAS358251 isolate CDPHFDLB-F15M02935-B SAMN35880915-rid18544343.denovo.01, whole genome shotgun sequence	254385..254822	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWKH010000057.1 Salmonella enterica strain PNUSAS358251 isolate CDPHFDLB-F15M02935-B SAMN35880915-rid18544343.guided.43, whole genome shotgun sequence	43..480	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.45	193 / 193	ABNWKH010000045.1 Salmonella enterica strain PNUSAS358251 isolate CDPHFDLB-F15M02935-B SAMN35880915-rid18544343.denovo.47, whole genome shotgun sequence	603..795																																																																	
GCA_032728985.1_PDT001788121.1_genomic.fna	Salmonella_enterica	0.5211	402.31 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWKG010000001.1 Salmonella enterica strain PNUSAS358254 isolate CDPHFDLB-F15M02924-B SAMN35880914-rid18544353.denovo.01, whole genome shotgun sequence	425445..425882	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWKG010000037.1 Salmonella enterica strain PNUSAS358254 isolate CDPHFDLB-F15M02924-B SAMN35880914-rid18544353.guided.27, whole genome shotgun sequence	389..826	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032729265.1_PDT001940383.1_genomic.fna	Salmonella_enterica	0.5228	127.276 KB	13	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_12	434	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_12	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQFVB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00041624 SAMN37819790-rid19831373.denovo.01, whole genome shotgun sequence	156515..156952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQFVB010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Hvittingfoss isolate AUSMDU00041624 SAMN37819790-rid19831373.guided.38, whole genome shotgun sequence	15589..16026	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFVB010000013.1	43584..44453	99.31	870	0						
GCA_032729285.1_PDT001940373.1_genomic.fna	Salmonella_enterica	0.5215	141.655 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFVC010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00042589 SAMN37819799-rid19831363.denovo.02, whole genome shotgun sequence	107066..107503	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFVC010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00042589 SAMN37819799-rid19831363.guided.33, whole genome shotgun sequence	31302..31739	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFVC010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00042589 SAMN37819799-rid19831363.denovo.32, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQFVC010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00042589 SAMN37819799-rid19831363.denovo.54, whole genome shotgun sequence	3433..3694																																																avrA	DAQFVC010000004.1	115377..116246	99.54	870	0						
GCA_032729305.1_PDT001940365.1_genomic.fna	Salmonella_enterica	0.5214	144.047 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFVD010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00044401 SAMN37819807-rid19830403.denovo.04, whole genome shotgun sequence	106341..106778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFVD010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00044401 SAMN37819807-rid19830403.guided.30, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQFVD010000002.1	176035..176904	99.54	870	0						
GCA_032729325.1_PDT001940274.1_genomic.fna	Salmonella_enterica	0.5214	281.149 KB	7	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQFVE010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00023937 SAMN37819574-rid19827993.denovo.02, whole genome shotgun sequence	145231..145668	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQFVE010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00023937 SAMN37819574-rid19827993.guided.23, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	DAQFVE010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00023937 SAMN37819574-rid19827993.denovo.03, whole genome shotgun sequence	323743..324165	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQFVE010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00023937 SAMN37819574-rid19827993.guided.15, whole genome shotgun sequence	130304..130726	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.86	114 / 114	DAQFVE010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00023937 SAMN37819574-rid19827993.denovo.33, whole genome shotgun sequence	852..965																																																						avrA	DAQFVE010000004.1	181506..182375	99.425	870	0						
GCA_032729345.1_PDT001940460.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWKW010000001.1 Salmonella enterica strain PNUSAS390816 SAMN37831081-rid19835973.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWKW010000026.1 Salmonella enterica strain PNUSAS390816 SAMN37831081-rid19835973.guided.24, whole genome shotgun sequence	258..695	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWKW010000012.1 Salmonella enterica strain PNUSAS390816 SAMN37831081-rid19835973.denovo.12, whole genome shotgun sequence	40578..41220	enterobacteriales	IncFII(S)	100	262 / 262	ABNWKW010000015.1 Salmonella enterica strain PNUSAS390816 SAMN37831081-rid19835973.denovo.15, whole genome shotgun sequence	3404..3665																																																avrA	ABNWKW010000002.1	553546..554415	99.54	870	0						
GCA_032729365.1_PDT001940227.1_genomic.fna	Salmonella_enterica	0.5222	82.618 KB	21	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFVG010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045169 SAMN37819815-rid19826583.denovo.029, whole genome shotgun sequence	12533..12970	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFVG010000130.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045169 SAMN37819815-rid19826583.guided.036, whole genome shotgun sequence	34915..35352	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFVG010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045169 SAMN37819815-rid19826583.denovo.016, whole genome shotgun sequence	43102..43744	enterobacteriales	IncFII(S)	100	262 / 262	DAQFVG010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045169 SAMN37819815-rid19826583.denovo.016, whole genome shotgun sequence	58829..59090																																																avrA	DAQFVG010000008.1	39625..40494	99.885	870	0						
GCA_032729385.1_PDT001940156.1_genomic.fna	Salmonella_enterica	0.5217	225.555 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFVF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048133 SAMN37820053-rid19829343.denovo.01, whole genome shotgun sequence	145392..145829	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFVF010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048133 SAMN37820053-rid19829343.guided.33, whole genome shotgun sequence	10184..10621	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFVF010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048133 SAMN37820053-rid19829343.denovo.16, whole genome shotgun sequence	48417..49059	enterobacteriales	IncFII(S)	100	262 / 262	DAQFVF010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048133 SAMN37820053-rid19829343.denovo.16, whole genome shotgun sequence	64144..64405																																																avrA	DAQFVF010000003.1	185330..186199	99.885	870	0						
GCA_032729405.1_PDT001940136.1_genomic.fna	Salmonella_enterica	0.5217	184.089 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFVH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00024807 SAMN37819584-rid19829323.denovo.01, whole genome shotgun sequence	302683..303120	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFVH010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00024807 SAMN37819584-rid19829323.guided.18, whole genome shotgun sequence	7403..7840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFVH010000002.1	149580..150449	99.655	870	0						
GCA_032729425.1_PDT001940049.1_genomic.fna	Salmonella_enterica	0.5213	421.407 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFVI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021981 SAMN37819532-rid19829293.denovo.01, whole genome shotgun sequence	293253..293690	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFVI010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021981 SAMN37819532-rid19829293.guided.19, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFVI010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021981 SAMN37819532-rid19829293.denovo.20, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQFVI010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021981 SAMN37819532-rid19829293.denovo.26, whole genome shotgun sequence	3413..3674																																																avrA	DAQFVI010000002.1	553062..553931	99.54	870	0						
GCA_032729445.1_PDT001939988.1_genomic.fna	Salmonella_enterica	0.5209	171.36 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFVJ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046694 SAMN37819976-rid19826483.denovo.02, whole genome shotgun sequence	20257..20694	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFVJ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046694 SAMN37819976-rid19826483.guided.23, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFVJ010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046694 SAMN37819976-rid19826483.denovo.42, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFVJ010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046694 SAMN37819976-rid19826483.denovo.28, whole genome shotgun sequence	36764..37406		enterobacteriales	IncFII(S)	100	262 / 262	DAQFVJ010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00046694 SAMN37819976-rid19826483.denovo.28, whole genome shotgun sequence	51789..52050																																									avrA	DAQFVJ010000006.1	140746..141615	99.54	870	0						
GCA_032729465.1_PDT001939972.1_genomic.fna	Salmonella_enterica	0.522	79.563 KB	21	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFVK010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048630 SAMN37820077-rid19829273.denovo.024, whole genome shotgun sequence	20959..21396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFVK010000119.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048630 SAMN37820077-rid19829273.guided.075, whole genome shotgun sequence	2611..3048	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFVK010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048630 SAMN37820077-rid19829273.denovo.013, whole genome shotgun sequence	48432..49074	enterobacteriales	IncFII(S)	100	262 / 262	DAQFVK010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048630 SAMN37820077-rid19829273.denovo.013, whole genome shotgun sequence	64159..64420																																																avrA	DAQFVK010000007.1	61077..61946	99.885	870	0						
GCA_032729485.1_PDT001939917.1_genomic.fna	Salmonella_enterica	0.5231	144.403 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFVM010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028452 SAMN37819665-rid19829263.denovo.24, whole genome shotgun sequence	12543..12980	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFVM010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00028452 SAMN37819665-rid19829263.guided.38, whole genome shotgun sequence	34205..34642	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFVM010000002.1	149550..150419	99.77	870	0						
GCA_032729505.1_PDT001939891.1_genomic.fna	Salmonella_enterica	0.523	95.633 KB	15	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFVN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00040900 SAMN37819775-rid19827873.denovo.01, whole genome shotgun sequence	260316..260753	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFVN010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00040900 SAMN37819775-rid19827873.guided.42, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFVN010000005.1	60547..61416	99.77	870	0						
GCA_032729525.1_PDT001939963.1_genomic.fna	Salmonella_enterica	0.5222	72.442 KB	22	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFVL010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048747 SAMN37820085-rid19822203.denovo.014, whole genome shotgun sequence	38019..38456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFVL010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048747 SAMN37820085-rid19822203.guided.069, whole genome shotgun sequence	9882..10319	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFVL010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048747 SAMN37820085-rid19822203.denovo.087, whole genome shotgun sequence	9179..9821	enterobacteriales	IncFII(S)	100	262 / 262	DAQFVL010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048747 SAMN37820085-rid19822203.denovo.044, whole genome shotgun sequence	29458..29719																																																avrA	DAQFVL010000027.1	61118..61987	99.885	870	0						
GCA_032729545.1_PDT001788116.1_genomic.fna	Salmonella_enterica	0.522	242.624 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWLB010000003.1 Salmonella enterica strain PNUSAS358228 SAMN35880904-rid18544303.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWLB010000046.1 Salmonella enterica strain PNUSAS358228 SAMN35880904-rid18544303.guided.33, whole genome shotgun sequence	8486..8923	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNWLB010000015.1 Salmonella enterica strain PNUSAS358228 SAMN35880904-rid18544303.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNWLB010000015.1 Salmonella enterica strain PNUSAS358228 SAMN35880904-rid18544303.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNWLB010000009.1	39482..40350	100	869	0						
GCA_032729565.1_PDT001788118.1_genomic.fna	Salmonella_enterica	0.5228	397.936 KB	5	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	3	aac(6')-Iaa,aac(6')-Iaa,blaHERA-3,blaHERA-3,tet(A),tet(A)	0		2	IncFII(pHN7A8),IncI1-I(Alpha)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNWKY010000001.1 Salmonella enterica strain PNUSAS358227 SAMN35880905-rid18544323.denovo.01, whole genome shotgun sequence	666961..667398	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNWKY010000044.1 Salmonella enterica strain PNUSAS358227 SAMN35880905-rid18544323.guided.25, whole genome shotgun sequence	5916..6353	Amikacin, Tobramycin	NC_003197	blaHERA-3	98.85	873/873	ABNWKY010000031.1 Salmonella enterica strain PNUSAS358227 SAMN35880905-rid18544323.denovo.36, whole genome shotgun sequence	76..948	Amoxicillin, Ampicillin, Ticarcillin	AF398335	blaHERA-3	98.85	873/873	ABNWKY010000046.1 Salmonella enterica strain PNUSAS358227 SAMN35880905-rid18544323.guided.35, whole genome shotgun sequence	117..989	Amoxicillin, Ampicillin, Ticarcillin	AF398335	tet(A)	100	1200/1200	ABNWKY010000024.1 Salmonella enterica strain PNUSAS358227 SAMN35880905-rid18544323.denovo.27, whole genome shotgun sequence	1630..2829	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWKY010000045.1 Salmonella enterica strain PNUSAS358227 SAMN35880905-rid18544323.guided.29, whole genome shotgun sequence	1333..2532	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFII(pHN7A8)	97.69	260 / 260	ABNWKY010000017.1 Salmonella enterica strain PNUSAS358227 SAMN35880905-rid18544323.denovo.17, whole genome shotgun sequence	37248..37507	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNWKY010000022.1 Salmonella enterica strain PNUSAS358227 SAMN35880905-rid18544323.denovo.22, whole genome shotgun sequence	3702..3843																																																avrA	ABNWKY010000002.1	509185..510054	99.31	870	0						
GCA_032729585.1_PDT001926151.1_genomic.fna	Salmonella_enterica	0.5214	333.002 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWKX010000001.1 Salmonella enterica strain PNUSAS390337 SAMN37803569-rid19695623.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWKX010000031.1 Salmonella enterica strain PNUSAS390337 SAMN37803569-rid19695623.guided.24, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWKX010000005.1	149828..150697	99.655	870	0						
GCA_032729645.1_PDT001788113.1_genomic.fna	Salmonella_enterica	0.5213	402.323 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWLD010000003.1 Salmonella enterica strain PNUSAS358244 isolate CDPHFDLB-F15M02914-B SAMN35880922-rid18544273.denovo.03, whole genome shotgun sequence	482525..482962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWLD010000035.1 Salmonella enterica strain PNUSAS358244 isolate CDPHFDLB-F15M02914-B SAMN35880922-rid18544273.guided.17, whole genome shotgun sequence	8009..8446	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032729665.1_PDT001788114.1_genomic.fna	Salmonella_enterica	0.5219	197.266 KB	8	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWLC010000003.1 Salmonella enterica strain PNUSAS358246 isolate CDPHFDLB-FM23-00843-B SAMN35880908-rid18544283.denovo.03, whole genome shotgun sequence	140510..140947	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWLC010000051.1 Salmonella enterica strain PNUSAS358246 isolate CDPHFDLB-FM23-00843-B SAMN35880908-rid18544283.guided.38, whole genome shotgun sequence	1999..2436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNWLC010000037.1 Salmonella enterica strain PNUSAS358246 isolate CDPHFDLB-FM23-00843-B SAMN35880908-rid18544283.denovo.40, whole genome shotgun sequence	547..675																																																						avrA	ABNWLC010000001.1	551329..552198	99.195	870	0						
GCA_032729705.1_PDT001788111.1_genomic.fna	Salmonella_enterica	0.5214	469.441 KB	3	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWLE010000001.1 Salmonella enterica strain PNUSAS358249 isolate CDPHFDLB-F14M01369-B SAMN35880910-rid18544253.denovo.01, whole genome shotgun sequence	609817..610254	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWLE010000051.1 Salmonella enterica strain PNUSAS358249 isolate CDPHFDLB-F14M01369-B SAMN35880910-rid18544253.guided.26, whole genome shotgun sequence	3591..4028	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWLE010000003.1	121617..122486	98.966	870	0						
GCA_032729725.1_PDT001788110.1_genomic.fna	Salmonella_enterica	0.5218	213.805 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA12,aph(3')-Ia,aac(6')-Iaa,aadA12,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	0		2	IncFIB(AP001918),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWLG010000001.1 Salmonella enterica strain PNUSAS358222 SAMN35880890-rid18544243.denovo.01, whole genome shotgun sequence	145212..145649	Amikacin, Tobramycin	NC_003197	aadA12	100	792/792	ABNWLG010000034.1 Salmonella enterica strain PNUSAS358222 SAMN35880890-rid18544243.denovo.38, whole genome shotgun sequence	8019..8810	Spectinomycin, Streptomycin	AY665771	aph(3')-Ia	100	816/816	ABNWLG010000046.1 Salmonella enterica strain PNUSAS358222 SAMN35880890-rid18544243.denovo.53, whole genome shotgun sequence	397..1212	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aac(6')-Iaa	100	438/438	ABNWLG010000062.1 Salmonella enterica strain PNUSAS358222 SAMN35880890-rid18544243.guided.31, whole genome shotgun sequence	24969..25406	Amikacin, Tobramycin	NC_003197	aadA12	100	792/792	ABNWLG010000064.1 Salmonella enterica strain PNUSAS358222 SAMN35880890-rid18544243.guided.37, whole genome shotgun sequence	5406..6197	Spectinomycin, Streptomycin	AY665771	aph(3')-Ia	100	816/816	ABNWLG010000067.1 Salmonella enterica strain PNUSAS358222 SAMN35880890-rid18544243.guided.52, whole genome shotgun sequence	289..1104	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	blaTEM-1B	100	861/861	ABNWLG010000038.1 Salmonella enterica strain PNUSAS358222 SAMN35880890-rid18544243.denovo.42, whole genome shotgun sequence	5055..5915	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNWLG010000065.1 Salmonella enterica strain PNUSAS358222 SAMN35880890-rid18544243.guided.43, whole genome shotgun sequence	3883..4743	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	ABNWLG010000034.1 Salmonella enterica strain PNUSAS358222 SAMN35880890-rid18544243.denovo.38, whole genome shotgun sequence	6675..7514	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWLG010000064.1 Salmonella enterica strain PNUSAS358222 SAMN35880890-rid18544243.guided.37, whole genome shotgun sequence	6702..7541	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNWLG010000041.1 Salmonella enterica strain PNUSAS358222 SAMN35880890-rid18544243.denovo.47, whole genome shotgun sequence	1995..3194	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWLG010000066.1 Salmonella enterica strain PNUSAS358222 SAMN35880890-rid18544243.guided.45, whole genome shotgun sequence	2036..3235	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNWLG010000039.1 Salmonella enterica strain PNUSAS358222 SAMN35880890-rid18544243.denovo.44, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII(S)	100	262 / 262	ABNWLG010000018.1 Salmonella enterica strain PNUSAS358222 SAMN35880890-rid18544243.denovo.18, whole genome shotgun sequence	5696..5957																																																avrA	ABNWLG010000008.1	39347..40216	99.885	870	0						
GCA_032729745.1_PDT001788108.1_genomic.fna	Salmonella_enterica	0.5202	477.856 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWLI010000001.1 Salmonella enterica strain PNUSAS358158 SAMN35880896-rid18544223.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWLI010000026.1 Salmonella enterica strain PNUSAS358158 SAMN35880896-rid18544223.guided.13, whole genome shotgun sequence	541..978	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWLI010000017.1 Salmonella enterica strain PNUSAS358158 SAMN35880896-rid18544223.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNWLI010000019.1 Salmonella enterica strain PNUSAS358158 SAMN35880896-rid18544223.denovo.22, whole genome shotgun sequence	3390..3651		enterobacteriales	IncX1	98.93	374 / 374	ABNWLI010000013.1 Salmonella enterica strain PNUSAS358158 SAMN35880896-rid18544223.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNWLI010000008.1	174755..175624	99.54	870	0						
GCA_032729765.1_PDT001788109.1_genomic.fna	Salmonella_enterica	0.5211	405.721 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC,ColpVC	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWLH010000001.1 Salmonella enterica strain PNUSAS358252 isolate CDPHFDLB-F15M02935-A SAMN35880920-rid18544233.denovo.01, whole genome shotgun sequence	482525..482962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWLH010000039.1 Salmonella enterica strain PNUSAS358252 isolate CDPHFDLB-F15M02935-A SAMN35880920-rid18544233.guided.22, whole genome shotgun sequence	2160..2597	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	96.89	193 / 193	ABNWLH010000024.1 Salmonella enterica strain PNUSAS358252 isolate CDPHFDLB-F15M02935-A SAMN35880920-rid18544233.denovo.27, whole genome shotgun sequence	855..1047	enterobacteriales	ColpVC	98.45	193 / 193	ABNWLH010000025.1 Salmonella enterica strain PNUSAS358252 isolate CDPHFDLB-F15M02935-A SAMN35880920-rid18544233.denovo.28, whole genome shotgun sequence	603..795																																																											
GCA_032729785.1_PDT001788107.1_genomic.fna	Salmonella_enterica	0.5223	414.335 KB	6	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNWLJ010000006.1 Salmonella enterica strain PNUSAS358223 SAMN35880884-rid18544463.denovo.06, whole genome shotgun sequence	256054..256491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNWLJ010000031.1 Salmonella enterica strain PNUSAS358223 SAMN35880884-rid18544463.guided.21, whole genome shotgun sequence	3077..3514	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWLJ010000002.1	440215..441084	99.31	870	0						
GCA_032729805.1_PDT001788105.1_genomic.fna	Salmonella_enterica	0.5195	214.188 KB	6	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNWLL010000001.1 Salmonella enterica strain PNUSAS358225 SAMN35880883-rid18544203.denovo.01, whole genome shotgun sequence	629771..630208	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNWLL010000042.1 Salmonella enterica strain PNUSAS358225 SAMN35880883-rid18544203.guided.17, whole genome shotgun sequence	5874..6311	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.14	643 / 643	ABNWLL010000027.1 Salmonella enterica strain PNUSAS358225 SAMN35880883-rid18544203.denovo.28, whole genome shotgun sequence	6254..6896	enterobacteriales	IncFII	95.02	261 / 261	ABNWLL010000031.1 Salmonella enterica strain PNUSAS358225 SAMN35880883-rid18544203.denovo.33, whole genome shotgun sequence	11984..12242																																																											
GCA_032729825.1_PDT001788106.1_genomic.fna	Salmonella_enterica	0.522	728.714 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWLK010000001.1 Salmonella enterica strain PNUSAS358155 SAMN35880895-rid18544213.denovo.01, whole genome shotgun sequence	482010..482447	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWLK010000020.1 Salmonella enterica strain PNUSAS358155 SAMN35880895-rid18544213.guided.13, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWLK010000003.1	553973..554842	99.77	870	0						
GCA_032729845.1_PDT001788104.1_genomic.fna	Salmonella_enterica	0.5219	322.34 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWLN010000001.1 Salmonella enterica strain PNUSAS358226 SAMN35880882-rid18544193.denovo.01, whole genome shotgun sequence	728824..729261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWLN010000043.1 Salmonella enterica strain PNUSAS358226 SAMN35880882-rid18544193.guided.25, whole genome shotgun sequence	48..485	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWLN010000003.1	39347..40216	99.195	870	0						
GCA_032729865.1_PDT001788102.1_genomic.fna	Salmonella_enterica	0.5217	206.001 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWLP010000002.1 Salmonella enterica strain PNUSAS358224 SAMN35880885-rid18544173.denovo.02, whole genome shotgun sequence	90451..90888	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWLP010000050.1 Salmonella enterica strain PNUSAS358224 SAMN35880885-rid18544173.guided.37, whole genome shotgun sequence	9809..10246	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032729885.1_PDT001788103.1_genomic.fna	Salmonella_enterica	0.5228	502.251 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNWLM010000001.1 Salmonella enterica strain PNUSAS358233 SAMN35880886-rid18544183.denovo.01, whole genome shotgun sequence	666657..667094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNWLM010000029.1 Salmonella enterica strain PNUSAS358233 SAMN35880886-rid18544183.guided.18, whole genome shotgun sequence	807..1244	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWLM010000003.1	541998..542867	99.31	870	0						
GCA_032729905.1_PDT001788101.1_genomic.fna	Salmonella_enterica	0.5231	183.791 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWLO010000004.1 Salmonella enterica strain PNUSAS358231 SAMN35880888-rid18544163.denovo.04, whole genome shotgun sequence	144950..145387	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWLO010000047.1 Salmonella enterica strain PNUSAS358231 SAMN35880888-rid18544163.guided.34, whole genome shotgun sequence	16861..17298	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWLO010000001.1	39349..40218	99.655	870	0						
GCA_032729925.1_PDT001788100.1_genomic.fna	Salmonella_enterica	0.5215	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWLQ010000003.1 Salmonella enterica strain PNUSAS358221 SAMN35880891-rid18544153.denovo.03, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWLQ010000060.1 Salmonella enterica strain PNUSAS358221 SAMN35880891-rid18544153.guided.30, whole genome shotgun sequence	20193..20630	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNWLQ010000017.1 Salmonella enterica strain PNUSAS358221 SAMN35880891-rid18544153.denovo.17, whole genome shotgun sequence	14681..15323	enterobacteriales	IncFII(S)	100	262 / 262	ABNWLQ010000017.1 Salmonella enterica strain PNUSAS358221 SAMN35880891-rid18544153.denovo.17, whole genome shotgun sequence	30408..30669		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNWLQ010000020.1 Salmonella enterica strain PNUSAS358221 SAMN35880891-rid18544153.denovo.20, whole genome shotgun sequence	68652..68793																																									avrA	ABNWLQ010000014.1	39470..40338	100	869	0						
GCA_032729945.1_PDT001788099.1_genomic.fna	Salmonella_enterica	0.5212	455.797 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWLR010000005.1 Salmonella enterica strain PNUSAS358157 SAMN35880892-rid18544143.denovo.05, whole genome shotgun sequence	162094..162531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWLR010000035.1 Salmonella enterica strain PNUSAS358157 SAMN35880892-rid18544143.guided.19, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWLR010000022.1 Salmonella enterica strain PNUSAS358157 SAMN35880892-rid18544143.denovo.24, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNWLR010000025.1 Salmonella enterica strain PNUSAS358157 SAMN35880892-rid18544143.denovo.28, whole genome shotgun sequence	3402..3663																																																avrA	ABNWLR010000001.1	553077..553946	99.54	870	0						
GCA_032729965.1_PDT001788098.1_genomic.fna	Salmonella_enterica	0.5208	401.046 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWLS010000004.1 Salmonella enterica strain PNUSAS358230 SAMN35880889-rid18544133.denovo.04, whole genome shotgun sequence	162550..162987	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWLS010000031.1 Salmonella enterica strain PNUSAS358230 SAMN35880889-rid18544133.guided.20, whole genome shotgun sequence	19441..19878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNWLS010000018.1 Salmonella enterica strain PNUSAS358230 SAMN35880889-rid18544133.denovo.19, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNWLS010000018.1 Salmonella enterica strain PNUSAS358230 SAMN35880889-rid18544133.denovo.19, whole genome shotgun sequence	5032..5293																																																avrA	ABNWLS010000001.1	553077..553946	99.54	870	0						
GCA_032730185.1_PDT001940782.1_genomic.fna	Salmonella_enterica	0.5225	658.712 KB	2	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWMD010000001.1 Salmonella enterica strain FDA1234226-S010-018 SAMN37832768-rid19837113.denovo.01, whole genome shotgun sequence	677161..677598	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWMD010000015.1 Salmonella enterica strain FDA1234226-S010-018 SAMN37832768-rid19837113.guided.13, whole genome shotgun sequence	2238..2675	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032730205.1_PDT001940355.1_genomic.fna	Salmonella_enterica	0.5226	45.975 KB	35	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFVP010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045860 SAMN37819902-rid19829383.denovo.067, whole genome shotgun sequence	12568..13005	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFVP010000192.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045860 SAMN37819902-rid19829383.guided.022, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFVP010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045860 SAMN37819902-rid19829383.denovo.005, whole genome shotgun sequence	9191..9833	enterobacteriales	IncFII(S)	100	262 / 262	DAQFVP010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045860 SAMN37819902-rid19829383.denovo.005, whole genome shotgun sequence	24918..25179																																																avrA	DAQFVP010000007.1	84015..84884	99.885	870	0						
GCA_032730225.1_PDT001940477.1_genomic.fna	Salmonella_enterica	0.5214	516.828 KB	4	aroC_147,dnaN_14,hemD_21,hisD_88,purE_6,sucA_676,thrA_12	3774	16:l,v:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_88	purE	100	100	purE_6	sucA	100	100	sucA_676	thrA	100	100	thrA_12	16	l,v	-	Salmonella enterica subspecies enterica (subspecies I)	I 16:l,v:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWME010000001.1 Salmonella enterica strain PNUSAS390802 SAMN37831409-rid19836143.denovo.01, whole genome shotgun sequence	739823..740260	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWME010000016.1 Salmonella enterica strain PNUSAS390802 SAMN37831409-rid19836143.guided.14, whole genome shotgun sequence	4943..5380	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWME010000002.1	554020..554889	99.77	870	0						
GCA_032730245.1_PDT001940385.1_genomic.fna	Salmonella_enterica	0.5219	129.266 KB	14	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQFVO010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00041509 SAMN37819788-rid19829393.denovo.21, whole genome shotgun sequence	52262..52699	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQFVO010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Give isolate AUSMDU00041509 SAMN37819788-rid19829393.guided.41, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																						avrA	DAQFVO010000006.1	106306..107175	99.54	870	0						
GCA_032730265.1_PDT001940211.1_genomic.fna	Salmonella_enterica	0.5218	81.529 KB	21	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFVS010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045381 SAMN37819830-rid19830373.denovo.003, whole genome shotgun sequence	134020..134457	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFVS010000127.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045381 SAMN37819830-rid19830373.guided.058, whole genome shotgun sequence	13725..14162	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFVS010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045381 SAMN37819830-rid19830373.denovo.012, whole genome shotgun sequence	48428..49070	enterobacteriales	IncFII(S)	100	262 / 262	DAQFVS010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045381 SAMN37819830-rid19830373.denovo.012, whole genome shotgun sequence	64155..64416		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFVS010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045381 SAMN37819830-rid19830373.denovo.021, whole genome shotgun sequence	16389..16525																																									avrA	DAQFVS010000008.1	108251..109120	99.885	870	0						
GCA_032730275.1_PDT001940203.1_genomic.fna	Salmonella_enterica	0.5198	165.551 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	4	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFVT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022267 SAMN37819541-rid19830363.denovo.01, whole genome shotgun sequence	242026..242463	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFVT010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022267 SAMN37819541-rid19830363.guided.31, whole genome shotgun sequence	6125..6562	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	DAQFVT010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022267 SAMN37819541-rid19830363.denovo.34, whole genome shotgun sequence	5285..6145	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQFVT010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022267 SAMN37819541-rid19830363.denovo.34, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQFVT010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022267 SAMN37819541-rid19830363.denovo.34, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQFVT010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022267 SAMN37819541-rid19830363.denovo.34, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQFVT010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022267 SAMN37819541-rid19830363.denovo.34, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	DAQFVT010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022267 SAMN37819541-rid19830363.guided.52, whole genome shotgun sequence	3945..4805	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQFVT010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022267 SAMN37819541-rid19830363.guided.52, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQFVT010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022267 SAMN37819541-rid19830363.guided.52, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQFVT010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022267 SAMN37819541-rid19830363.guided.52, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQFVT010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022267 SAMN37819541-rid19830363.guided.52, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFVT010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022267 SAMN37819541-rid19830363.denovo.30, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	DAQFVT010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022267 SAMN37819541-rid19830363.denovo.48, whole genome shotgun sequence	3423..3684		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQFVT010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022267 SAMN37819541-rid19830363.denovo.24, whole genome shotgun sequence	19073..19214		enterobacteriales	IncX1	98.66	374 / 374	DAQFVT010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022267 SAMN37819541-rid19830363.denovo.34, whole genome shotgun sequence	11911..12284																																		avrA	DAQFVT010000006.1	115367..116236	99.54	870	0						
GCA_032730305.1_PDT001940231.1_genomic.fna	Salmonella_enterica	0.522	90.26 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFVQ010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045106 SAMN37819811-rid19831343.denovo.004, whole genome shotgun sequence	134040..134477	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFVQ010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045106 SAMN37819811-rid19831343.guided.051, whole genome shotgun sequence	15935..16372	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFVQ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045106 SAMN37819811-rid19831343.denovo.014, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	DAQFVQ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045106 SAMN37819811-rid19831343.denovo.014, whole genome shotgun sequence	64139..64400																																																avrA	DAQFVQ010000009.1	39625..40494	99.885	870	0						
GCA_032730325.1_PDT001940229.1_genomic.fna	Salmonella_enterica	0.5228	40.542 KB	34	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFVR010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045167 SAMN37819813-rid19831333.denovo.014, whole genome shotgun sequence	11319..11756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFVR010000197.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045167 SAMN37819813-rid19831333.guided.099, whole genome shotgun sequence	14188..14625	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFVR010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045167 SAMN37819813-rid19831333.denovo.007, whole genome shotgun sequence	43070..43712	enterobacteriales	IncFII(S)	100	262 / 262	DAQFVR010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045167 SAMN37819813-rid19831333.denovo.007, whole genome shotgun sequence	58797..59058																																																avrA	DAQFVR010000011.1	61656..62525	99.885	870	0						
GCA_032730345.1_PDT001940201.1_genomic.fna	Salmonella_enterica	0.5216	77.039 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFVU010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045415 SAMN37819839-rid19830353.denovo.027, whole genome shotgun sequence	12484..12921	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFVU010000125.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045415 SAMN37819839-rid19830353.guided.074, whole genome shotgun sequence	2022..2459	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQFVU010000008.1	61078..61946	99.77	870	0						
GCA_032730365.1_PDT001940192.1_genomic.fna	Salmonella_enterica	0.5216	85.206 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFVV010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046070 SAMN37819934-rid19823673.denovo.022, whole genome shotgun sequence	12481..12918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFVV010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046070 SAMN37819934-rid19823673.guided.044, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFVV010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046070 SAMN37819934-rid19823673.denovo.015, whole genome shotgun sequence	48453..49095	enterobacteriales	IncFII(S)	100	262 / 262	DAQFVV010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046070 SAMN37819934-rid19823673.denovo.015, whole genome shotgun sequence	64180..64441																																																avrA	DAQFVV010000026.1	61077..61946	99.885	870	0						
GCA_032730385.1_PDT001940162.1_genomic.fna	Salmonella_enterica	0.5195	375.728 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI1-I(Alpha),pXuzhou21	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFVW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023109 SAMN37819562-rid19825093.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFVW010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023109 SAMN37819562-rid19825093.guided.15, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFVW010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023109 SAMN37819562-rid19825093.denovo.20, whole genome shotgun sequence	48689..49331	enterobacteriales	IncFII(S)	100	262 / 262	DAQFVW010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023109 SAMN37819562-rid19825093.denovo.20, whole genome shotgun sequence	4450..4711		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQFVW010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023109 SAMN37819562-rid19825093.denovo.16, whole genome shotgun sequence	80479..80620		enterobacteriales	pXuzhou21	92.36	720 / 720	DAQFVW010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00023109 SAMN37819562-rid19825093.denovo.21, whole genome shotgun sequence	30100..30819																																		avrA	DAQFVW010000002.1	553366..554235	99.54	870	0						
GCA_032730405.1_PDT001940152.1_genomic.fna	Salmonella_enterica	0.5219	88.54 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFVX010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048149 SAMN37820057-rid19826563.denovo.02, whole genome shotgun sequence	145233..145670	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFVX010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048149 SAMN37820057-rid19826563.guided.66, whole genome shotgun sequence	14886..15323	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFVX010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048149 SAMN37820057-rid19826563.denovo.13, whole genome shotgun sequence	48424..49066	enterobacteriales	IncFII(S)	100	262 / 262	DAQFVX010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048149 SAMN37820057-rid19826563.denovo.13, whole genome shotgun sequence	64151..64412																																																avrA	DAQFVX010000021.1	39625..40494	99.885	870	0						
GCA_032730425.1_PDT001940000.1_genomic.fna	Salmonella_enterica	0.5231	58.767 KB	25	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFVY010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00046498 SAMN37819965-rid19831293.denovo.020, whole genome shotgun sequence	12533..12970	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFVY010000151.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00046498 SAMN37819965-rid19831293.guided.059, whole genome shotgun sequence	14622..15059	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFVY010000008.1	105146..106015	99.655	870	0						
GCA_032730445.1_PDT001939974.1_genomic.fna	Salmonella_enterica	0.522	59.106 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFVZ010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048603 SAMN37820075-rid19830323.denovo.064, whole genome shotgun sequence	12505..12942	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFVZ010000162.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048603 SAMN37820075-rid19830323.guided.097, whole genome shotgun sequence	11594..12031	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFVZ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048603 SAMN37820075-rid19830323.denovo.022, whole genome shotgun sequence	43086..43728	enterobacteriales	IncFII(S)	100	262 / 262	DAQFVZ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048603 SAMN37820075-rid19830323.denovo.022, whole genome shotgun sequence	58813..59074																																																avrA	DAQFVZ010000024.1	61118..61987	99.885	870	0						
GCA_032730465.1_PDT001939923.1_genomic.fna	Salmonella_enterica	0.521	162.897 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFWA010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028399 SAMN37819659-rid19826473.denovo.02, whole genome shotgun sequence	242032..242469	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFWA010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028399 SAMN37819659-rid19826473.guided.22, whole genome shotgun sequence	33474..33911	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFWA010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028399 SAMN37819659-rid19826473.denovo.53, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFWA010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028399 SAMN37819659-rid19826473.denovo.27, whole genome shotgun sequence	40532..41174		enterobacteriales	IncFII(S)	100	262 / 262	DAQFWA010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028399 SAMN37819659-rid19826473.denovo.27, whole genome shotgun sequence	55557..55818																																									avrA	DAQFWA010000003.1	115334..116203	99.54	870	0						
GCA_032730485.1_PDT001939913.1_genomic.fna	Salmonella_enterica	0.5219	136.599 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFWB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00038662 SAMN37819755-rid19826463.denovo.01, whole genome shotgun sequence	76129..76566	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFWB010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00038662 SAMN37819755-rid19826463.guided.33, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFWB010000013.1	39528..40397	99.77	870	0						
GCA_032730505.1_PDT001939901.1_genomic.fna	Salmonella_enterica	0.5225	115.746 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFWC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00040361 SAMN37819766-rid19827893.denovo.01, whole genome shotgun sequence	382072..382509	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFWC010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00040361 SAMN37819766-rid19827893.guided.08, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFWC010000004.1	124105..124974	99.77	870	0						
GCA_032730525.1_PDT001939897.1_genomic.fna	Salmonella_enterica	0.521	268.246 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFWD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040554 SAMN37819769-rid19829243.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFWD010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040554 SAMN37819769-rid19829243.guided.20, whole genome shotgun sequence	15548..15985	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFWD010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040554 SAMN37819769-rid19829243.denovo.19, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	DAQFWD010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040554 SAMN37819769-rid19829243.denovo.19, whole genome shotgun sequence	5032..5293																																																avrA	DAQFWD010000006.1	175197..176066	99.54	870	0						
GCA_032730545.1_PDT001939842.1_genomic.fna	Salmonella_enterica	0.5217	77.741 KB	25	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFWE010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046765 SAMN37819992-rid19829233.denovo.032, whole genome shotgun sequence	15530..15967	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFWE010000134.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046765 SAMN37819992-rid19829233.guided.011, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFWE010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046765 SAMN37819992-rid19829233.denovo.012, whole genome shotgun sequence	44650..45292	enterobacteriales	IncFII(S)	100	262 / 262	DAQFWE010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046765 SAMN37819992-rid19829233.denovo.012, whole genome shotgun sequence	60377..60638		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFWE010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046765 SAMN37819992-rid19829233.denovo.015, whole genome shotgun sequence	15829..15965																																									avrA	DAQFWE010000045.1	39625..40494	99.885	870	0						
GCA_032730565.1_PDT001939830.1_genomic.fna	Salmonella_enterica	0.5213	103.071 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFWG010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046908 SAMN37820003-rid19829223.denovo.04, whole genome shotgun sequence	52519..52956	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFWG010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046908 SAMN37820003-rid19829223.guided.60, whole genome shotgun sequence	15239..15676	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFWG010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046908 SAMN37820003-rid19829223.denovo.16, whole genome shotgun sequence	48407..49049	enterobacteriales	IncFII(S)	100	262 / 262	DAQFWG010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046908 SAMN37820003-rid19829223.denovo.16, whole genome shotgun sequence	64134..64395		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFWG010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046908 SAMN37820003-rid19829223.denovo.43, whole genome shotgun sequence	22488..22624																																									avrA	DAQFWG010000003.1	107905..108774	99.885	870	0						
GCA_032730585.1_PDT001939838.1_genomic.fna	Salmonella_enterica	0.5241	44.651 KB	36	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	-:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQFWF010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046819 SAMN37819996-rid19831253.denovo.074, whole genome shotgun sequence	11331..11768	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQFWF010000204.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046819 SAMN37819996-rid19831253.guided.073, whole genome shotgun sequence	14246..14683	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	DAQFWF010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046819 SAMN37819996-rid19831253.denovo.039, whole genome shotgun sequence	2531..2953	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQFWF010000202.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00046819 SAMN37819996-rid19831253.guided.013, whole genome shotgun sequence	56898..57320	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFWF010000033.1	43805..44674	99.425	870	0						
GCA_032730605.1_PDT001939822.1_genomic.fna	Salmonella_enterica	0.5219	102.242 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncB/O/K/Z,IncB/O/K/Z,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFWH010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046961 SAMN37820009-rid19830313.denovo.08, whole genome shotgun sequence	83591..84028	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFWH010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046961 SAMN37820009-rid19830313.guided.40, whole genome shotgun sequence	38711..39148	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	DAQFWH010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046961 SAMN37820009-rid19830313.denovo.15, whole genome shotgun sequence	17657..18856	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQFWH010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046961 SAMN37820009-rid19830313.guided.25, whole genome shotgun sequence	71575..72774	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncB/O/K/Z	94.74	152 / 151	DAQFWH010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046961 SAMN37820009-rid19830313.denovo.15, whole genome shotgun sequence	25179..25329	enterobacteriales	IncB/O/K/Z	94.74	152 / 151	DAQFWH010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046961 SAMN37820009-rid19830313.guided.25, whole genome shotgun sequence	65102..65252		enterobacteriales	IncFIB(S)	100	643 / 643	DAQFWH010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046961 SAMN37820009-rid19830313.denovo.17, whole genome shotgun sequence	48407..49049		enterobacteriales	IncFII(S)	100	262 / 262	DAQFWH010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046961 SAMN37820009-rid19830313.denovo.17, whole genome shotgun sequence	64134..64395																																		avrA	DAQFWH010000011.1	39625..40494	99.885	870	0						
GCA_032730705.1_PDT001788092.1_genomic.fna	Salmonella_enterica	0.5224	396.029 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNWMI010000001.1 Salmonella enterica strain PNUSAS358219 SAMN35880722-rid18544073.denovo.01, whole genome shotgun sequence	838704..839141	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNWMI010000032.1 Salmonella enterica strain PNUSAS358219 SAMN35880722-rid18544073.guided.23, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWMI010000005.1	120621..121490	98.966	870	0						
GCA_032730745.1_PDT001788091.1_genomic.fna	Salmonella_enterica	0.521	406.648 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWMK010000001.1 Salmonella enterica strain PNUSAS358199 SAMN35880710-rid18544063.denovo.01, whole genome shotgun sequence	405089..405526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWMK010000036.1 Salmonella enterica strain PNUSAS358199 SAMN35880710-rid18544063.guided.21, whole genome shotgun sequence	11110..11547	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWMK010000018.1	39478..40346	99.195	870	0						
GCA_032730805.1_PDT001788087.1_genomic.fna	Salmonella_enterica	0.5212	406.452 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWMO010000001.1 Salmonella enterica strain PNUSAS358220 SAMN35880721-rid18544023.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWMO010000031.1 Salmonella enterica strain PNUSAS358220 SAMN35880721-rid18544023.guided.23, whole genome shotgun sequence	15456..15893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWMO010000024.1 Salmonella enterica strain PNUSAS358220 SAMN35880721-rid18544023.denovo.25, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNWMO010000019.1 Salmonella enterica strain PNUSAS358220 SAMN35880721-rid18544023.denovo.19, whole genome shotgun sequence	5032..5293																																																avrA	ABNWMO010000002.1	585354..586223	99.54	870	0						
GCA_032730885.1_PDT001788081.1_genomic.fna	Salmonella_enterica	0.5219	392.306 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWMU010000005.1 Salmonella enterica strain PNUSAS358201 SAMN35880715-rid18543583.denovo.05, whole genome shotgun sequence	255295..255732	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWMU010000028.1 Salmonella enterica strain PNUSAS358201 SAMN35880715-rid18543583.guided.23, whole genome shotgun sequence	4086..4523	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWMU010000001.1	498125..498993	99.425	870	0						
GCA_032730925.1_PDT001788082.1_genomic.fna	Salmonella_enterica	0.5213	759.356 KB	2	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWMS010000001.1 Salmonella enterica strain PNUSAS357946 SAMN35880497-rid18543983.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWMS010000023.1 Salmonella enterica strain PNUSAS357946 SAMN35880497-rid18543983.guided.15, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWMS010000015.1 Salmonella enterica strain PNUSAS357946 SAMN35880497-rid18543983.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNWMS010000016.1 Salmonella enterica strain PNUSAS357946 SAMN35880497-rid18543983.denovo.19, whole genome shotgun sequence	3395..3656																																																avrA	ABNWMS010000002.1	584130..584999	99.54	870	0						
GCA_032730945.1_PDT001788080.1_genomic.fna	Salmonella_enterica	0.5215	397.497 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI(Gamma)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWMV010000001.1 Salmonella enterica strain PNUSAS357947 SAMN35880498-rid18543973.denovo.01, whole genome shotgun sequence	833827..834264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWMV010000043.1 Salmonella enterica strain PNUSAS357947 SAMN35880498-rid18543973.guided.20, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI(Gamma)	97.81	137 / 141	ABNWMV010000017.1 Salmonella enterica strain PNUSAS357947 SAMN35880498-rid18543973.denovo.17, whole genome shotgun sequence	21075..21211																																																						avrA	ABNWMV010000007.1	147026..147894	98.851	870	0						
GCA_032730965.1_PDT001788079.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWMW010000001.1 Salmonella enterica strain PNUSAS357948 SAMN35880499-rid18543963.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWMW010000024.1 Salmonella enterica strain PNUSAS357948 SAMN35880499-rid18543963.guided.19, whole genome shotgun sequence	2648..3085	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWMW010000017.1 Salmonella enterica strain PNUSAS357948 SAMN35880499-rid18543963.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNWMW010000018.1 Salmonella enterica strain PNUSAS357948 SAMN35880499-rid18543963.denovo.21, whole genome shotgun sequence	3395..3656																																																avrA	ABNWMW010000002.1	553636..554505	99.54	870	0						
GCA_032730985.1_PDT001788078.1_genomic.fna	Salmonella_enterica	0.5193	466.552 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWMX010000001.1 Salmonella enterica strain PNUSAS357944 SAMN35880495-rid18543573.denovo.01, whole genome shotgun sequence	1303682..1304119	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWMX010000028.1 Salmonella enterica strain PNUSAS357944 SAMN35880495-rid18543573.guided.13, whole genome shotgun sequence	20626..21063	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNWMX010000013.1 Salmonella enterica strain PNUSAS357944 SAMN35880495-rid18543573.denovo.14, whole genome shotgun sequence	2465..2998	enterobacteriales	IncX1	98.4	374 / 374	ABNWMX010000017.1 Salmonella enterica strain PNUSAS357944 SAMN35880495-rid18543573.denovo.18, whole genome shotgun sequence	6956..7329																																																avrA	ABNWMX010000008.1	93870..94740	99.196	871	0						
GCA_032731005.1_PDT001940920.1_genomic.fna	Salmonella_enterica	0.5205	470.516 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWNA010000001.1 Salmonella enterica strain PNUSAS391573 SAMN37844960-rid19838953.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWNA010000031.1 Salmonella enterica strain PNUSAS391573 SAMN37844960-rid19838953.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWNA010000019.1 Salmonella enterica strain PNUSAS391573 SAMN37844960-rid19838953.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNWNA010000021.1 Salmonella enterica strain PNUSAS391573 SAMN37844960-rid19838953.denovo.23, whole genome shotgun sequence	3403..3664		enterobacteriales	IncX1	98.93	374 / 374	ABNWNA010000015.1 Salmonella enterica strain PNUSAS391573 SAMN37844960-rid19838953.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNWNA010000008.1	175109..175978	99.54	870	0						
GCA_032731025.1_PDT001940910.1_genomic.fna	Salmonella_enterica	0.5226	331.959 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWNB010000001.1 Salmonella enterica strain PNUSAS391659 SAMN37844942-rid19838923.denovo.01, whole genome shotgun sequence	454796..455233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWNB010000030.1 Salmonella enterica strain PNUSAS391659 SAMN37844942-rid19838923.guided.20, whole genome shotgun sequence	30267..30704	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNWNB010000023.1 Salmonella enterica strain PNUSAS391659 SAMN37844942-rid19838923.denovo.26, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNWNB010000033.1 Salmonella enterica strain PNUSAS391659 SAMN37844942-rid19838923.guided.28, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNWNB010000023.1 Salmonella enterica strain PNUSAS391659 SAMN37844942-rid19838923.denovo.26, whole genome shotgun sequence	1150..1280																																																						avrA	ABNWNB010000007.1	132751..133620	98.966	870	0						
GCA_032731035.1_PDT001940895.1_genomic.fna	Salmonella_enterica	0.5211	414.089 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	-	Salmonella enterica subspecies enterica (subspecies I)	I 9:l,z28:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWNC010000001.1 Salmonella enterica strain PNUSAS391657 SAMN37844940-rid19838883.denovo.01, whole genome shotgun sequence	519759..520196	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWNC010000026.1 Salmonella enterica strain PNUSAS391657 SAMN37844940-rid19838883.guided.21, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWNC010000002.1	497816..498684	99.425	870	0						
GCA_032731065.1_PDT001940940.1_genomic.fna	Salmonella_enterica	0.5217	333.88 KB	6	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWMZ010000002.1 Salmonella enterica strain PNUSAS391583 SAMN37844992-rid19839013.denovo.02, whole genome shotgun sequence	462724..463161	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWMZ010000042.1 Salmonella enterica strain PNUSAS391583 SAMN37844992-rid19839013.guided.23, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNWMZ010000024.1 Salmonella enterica strain PNUSAS391583 SAMN37844992-rid19839013.denovo.27, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNWMZ010000043.1 Salmonella enterica strain PNUSAS391583 SAMN37844992-rid19839013.guided.31, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNWMZ010000024.1 Salmonella enterica strain PNUSAS391583 SAMN37844992-rid19839013.denovo.27, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNWMZ010000044.1 Salmonella enterica strain PNUSAS391583 SAMN37844992-rid19839013.guided.36, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNWMZ010000024.1 Salmonella enterica strain PNUSAS391583 SAMN37844992-rid19839013.denovo.27, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWMZ010000043.1 Salmonella enterica strain PNUSAS391583 SAMN37844992-rid19839013.guided.31, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNWMZ010000024.1 Salmonella enterica strain PNUSAS391583 SAMN37844992-rid19839013.denovo.27, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNWMZ010000045.1 Salmonella enterica strain PNUSAS391583 SAMN37844992-rid19839013.guided.40, whole genome shotgun sequence	892..2166	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNWMZ010000024.1 Salmonella enterica strain PNUSAS391583 SAMN37844992-rid19839013.denovo.27, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNWMZ010000043.1 Salmonella enterica strain PNUSAS391583 SAMN37844992-rid19839013.guided.31, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNWMZ010000025.1 Salmonella enterica strain PNUSAS391583 SAMN37844992-rid19839013.denovo.28, whole genome shotgun sequence	8402..8652																																																						avrA	ABNWMZ010000001.1	553473..554342	99.77	870	0						
GCA_032731085.1_PDT001940935.1_genomic.fna	Salmonella_enterica	0.5218	624.83 KB	3	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNWMY010000001.1 Salmonella enterica strain PNUSAS391574 SAMN37844985-rid19839003.denovo.01, whole genome shotgun sequence	617728..618165	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNWMY010000022.1 Salmonella enterica strain PNUSAS391574 SAMN37844985-rid19839003.guided.13, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWMY010000002.1	178437..179306	99.425	870	0						
GCA_032731145.1_PDT001940885.1_genomic.fna	Salmonella_enterica	0.5212	320.428 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	7	aac(6')-Iaa,aac(6')-Iaa,aadA2,aadA2,blaCARB-2,blaCARB-2,qnrA1,qnrA1,sul1,sul1,sul1,tet(C),tet(C),dfrA12,dfrA12	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWND010000001.1 Salmonella enterica strain PNUSAS391623 SAMN37844521-rid19837443.denovo.01, whole genome shotgun sequence	152188..152625	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWND010000044.1 Salmonella enterica strain PNUSAS391623 SAMN37844521-rid19837443.guided.14, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197	aadA2	99.87	792/792	ABNWND010000048.1 Salmonella enterica strain PNUSAS391623 SAMN37844521-rid19837443.guided.32, whole genome shotgun sequence	8062..8853	Spectinomycin, Streptomycin	JQ364967	aadA2	99.87	792/792	ABNWND010000049.1 Salmonella enterica strain PNUSAS391623 SAMN37844521-rid19837443.guided.36, whole genome shotgun sequence	2265..3056	Spectinomycin, Streptomycin	JQ364967	blaCARB-2	100	867/867	ABNWND010000031.1 Salmonella enterica strain PNUSAS391623 SAMN37844521-rid19837443.denovo.37, whole genome shotgun sequence	324..1190	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNWND010000049.1 Salmonella enterica strain PNUSAS391623 SAMN37844521-rid19837443.guided.36, whole genome shotgun sequence	1281..2147	Ampicillin, Amoxicillin, Piperacillin	M69058	qnrA1	100	657/657	ABNWND010000031.1 Salmonella enterica strain PNUSAS391623 SAMN37844521-rid19837443.denovo.37, whole genome shotgun sequence	1450..2106	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNWND010000049.1 Salmonella enterica strain PNUSAS391623 SAMN37844521-rid19837443.guided.36, whole genome shotgun sequence	365..1021	Ciprofloxacin	AY070235	sul1	100	840/840	ABNWND010000033.1 Salmonella enterica strain PNUSAS391623 SAMN37844521-rid19837443.denovo.39, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWND010000048.1 Salmonella enterica strain PNUSAS391623 SAMN37844521-rid19837443.guided.32, whole genome shotgun sequence	9358..10197	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWND010000049.1 Salmonella enterica strain PNUSAS391623 SAMN37844521-rid19837443.guided.36, whole genome shotgun sequence	3561..4400	Sulfamethoxazole	U12338	tet(C)	99.92	1191/1191	ABNWND010000028.1 Salmonella enterica strain PNUSAS391623 SAMN37844521-rid19837443.denovo.33, whole genome shotgun sequence	6937..8127	Doxycycline, Tetracycline	AF055345	tet(C)	99.92	1191/1191	ABNWND010000048.1 Salmonella enterica strain PNUSAS391623 SAMN37844521-rid19837443.guided.32, whole genome shotgun sequence	141..1331	Doxycycline, Tetracycline	AF055345	dfrA12	100	498/498	ABNWND010000028.1 Salmonella enterica strain PNUSAS391623 SAMN37844521-rid19837443.denovo.33, whole genome shotgun sequence	614..1111	Trimethoprim	AM040708	dfrA12	100	498/498	ABNWND010000048.1 Salmonella enterica strain PNUSAS391623 SAMN37844521-rid19837443.guided.32, whole genome shotgun sequence	7157..7654	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032731165.1_PDT001940865.1_genomic.fna	Salmonella_enterica	0.522	414.233 KB	5	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNWNH010000005.1 Salmonella enterica strain PNUSAS391622 SAMN37844522-rid19838793.denovo.05, whole genome shotgun sequence	255952..256389	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNWNH010000030.1 Salmonella enterica strain PNUSAS391622 SAMN37844522-rid19838793.guided.14, whole genome shotgun sequence	41975..42412	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWNH010000001.1	440215..441084	99.31	870	0						
GCA_032731205.1_PDT001940859.1_genomic.fna	Salmonella_enterica	0.5211	183.784 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWNJ010000004.1 Salmonella enterica strain PNUSAS391625 SAMN37844519-rid19837343.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWNJ010000067.1 Salmonella enterica strain PNUSAS391625 SAMN37844519-rid19837343.guided.53, whole genome shotgun sequence	64..501	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNWNJ010000019.1 Salmonella enterica strain PNUSAS391625 SAMN37844519-rid19837343.denovo.19, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNWNJ010000019.1 Salmonella enterica strain PNUSAS391625 SAMN37844519-rid19837343.denovo.19, whole genome shotgun sequence	30407..30668		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNWNJ010000022.1 Salmonella enterica strain PNUSAS391625 SAMN37844519-rid19837343.denovo.22, whole genome shotgun sequence	64313..64454																																									avrA	ABNWNJ010000002.1	401471..402339	100	869	0						
GCA_032731305.1_PDT001940819.1_genomic.fna	Salmonella_enterica	0.5224	76.955 KB	21	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWNM010000029.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314555 SAMN37844039-rid19837253.denovo.029, whole genome shotgun sequence	14078..14515	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWNM010000130.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314555 SAMN37844039-rid19837253.guided.048, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWNM010000079.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314555 SAMN37844039-rid19837253.denovo.082, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNWNM010000092.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314555 SAMN37844039-rid19837253.denovo.095, whole genome shotgun sequence	3404..3665																																																avrA	ABNWNM010000003.1	62006..62875	99.54	870	0						
GCA_032731325.1_PDT001940799.1_genomic.fna	Salmonella_enterica	0.5204	281.888 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWNO010000003.1 Salmonella enterica strain PNUSAS391610 SAMN37844023-rid19837163.denovo.03, whole genome shotgun sequence	413051..413488	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWNO010000030.1 Salmonella enterica strain PNUSAS391610 SAMN37844023-rid19837163.guided.25, whole genome shotgun sequence	7287..7724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNWNO010000020.1 Salmonella enterica strain PNUSAS391610 SAMN37844023-rid19837163.denovo.20, whole genome shotgun sequence	34958..35491																																																						avrA	ABNWNO010000001.1	544613..545481	99.425	870	0						
GCA_032731345.1_PDT001940798.1_genomic.fna	Salmonella_enterica	0.522	520.791 KB	4	aroC_16,dnaN_16,hemD_20,hisD_1044,purE_8,sucA_12,thrA_18	4856	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_1044	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWNP010000001.1 Salmonella enterica strain PNUSAS391616 SAMN37844013-rid19837153.denovo.01, whole genome shotgun sequence	136548..136985	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWNP010000023.1 Salmonella enterica strain PNUSAS391616 SAMN37844013-rid19837153.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWNP010000003.1	510238..511104	98.966	870	0						
GCA_032731365.1_PDT001940766.1_genomic.fna	Salmonella_enterica	0.521	366.413 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWNR010000010.1 Salmonella enterica strain PNUSAS391513 SAMN37831715-rid19839843.denovo.10, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWNR010000038.1 Salmonella enterica strain PNUSAS391513 SAMN37831715-rid19839843.guided.28, whole genome shotgun sequence	1490..1927	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNWNR010000019.1 Salmonella enterica strain PNUSAS391513 SAMN37831715-rid19839843.denovo.19, whole genome shotgun sequence	34957..35490																																																						avrA	ABNWNR010000003.1	39468..40334	98.966	870	0						
GCA_032731385.1_PDT001940793.1_genomic.fna	Salmonella_enterica	0.5206	501.151 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWNQ010000001.1 Salmonella enterica strain PNUSAS391613 SAMN37844021-rid19838563.denovo.01, whole genome shotgun sequence	136575..137012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWNQ010000025.1 Salmonella enterica strain PNUSAS391613 SAMN37844021-rid19838563.guided.19, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	100	316 / 316	ABNWNQ010000014.1 Salmonella enterica strain PNUSAS391613 SAMN37844021-rid19838563.denovo.14, whole genome shotgun sequence	26537..26852																																																						avrA	ABNWNQ010000003.1	497989..498857	99.425	870	0						
GCA_032731405.1_PDT001940762.1_genomic.fna	Salmonella_enterica	0.5223	401.837 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNWNS010000006.1 Salmonella enterica strain PNUSAS391490 SAMN37831709-rid19837073.denovo.06, whole genome shotgun sequence	149862..150299	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNWNS010000033.1 Salmonella enterica strain PNUSAS391490 SAMN37831709-rid19837073.guided.23, whole genome shotgun sequence	15339..15776	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNWNS010000015.1 Salmonella enterica strain PNUSAS391490 SAMN37831709-rid19837073.denovo.15, whole genome shotgun sequence	2478..3011																																																						avrA	ABNWNS010000002.1	406189..407058	99.54	870	0						
GCA_032731425.1_PDT001940740.1_genomic.fna	Salmonella_enterica	0.5224	424.553 KB	4	aroC_42,dnaN_11,hemD_48,hisD_149,purE_12,sucA_13,thrA_4	1575	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWNT010000001.1 Salmonella enterica strain PNUSAS391508 SAMN37831694-rid19839773.denovo.01, whole genome shotgun sequence	464532..464969	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWNT010000030.1 Salmonella enterica strain PNUSAS391508 SAMN37831694-rid19839773.guided.17, whole genome shotgun sequence	14155..14592	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032731445.1_PDT001940720.1_genomic.fna	Salmonella_enterica	0.522	507.387 KB	4	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNWNU010000002.1 Salmonella enterica strain PNUSAS391514 SAMN37831698-rid19839713.denovo.02, whole genome shotgun sequence	159386..159823	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNWNU010000035.1 Salmonella enterica strain PNUSAS391514 SAMN37831698-rid19839713.guided.23, whole genome shotgun sequence	7427..7864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNWNU010000029.1 Salmonella enterica strain PNUSAS391514 SAMN37831698-rid19839713.denovo.32, whole genome shotgun sequence	1708..1838																																																						avrA	ABNWNU010000001.1	148785..149654	99.08	870	0						
GCA_032731465.1_PDT001940717.1_genomic.fna	Salmonella_enterica	0.5211	412.563 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWNV010000001.1 Salmonella enterica strain PNUSAS391447 SAMN37831597-rid19836963.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWNV010000027.1 Salmonella enterica strain PNUSAS391447 SAMN37831597-rid19836963.guided.19, whole genome shotgun sequence	2668..3105	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWNV010000014.1 Salmonella enterica strain PNUSAS391447 SAMN37831597-rid19836963.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNWNV010000018.1 Salmonella enterica strain PNUSAS391447 SAMN37831597-rid19836963.denovo.21, whole genome shotgun sequence	3392..3653																																																avrA	ABNWNV010000002.1	585499..586368	99.54	870	0						
GCA_032731485.1_PDT001940711.1_genomic.fna	Salmonella_enterica	0.5221	709.906 KB	3	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWNW010000001.1 Salmonella enterica strain PNUSAS391430 SAMN37831594-rid19836943.denovo.01, whole genome shotgun sequence	38065..38502	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWNW010000025.1 Salmonella enterica strain PNUSAS391430 SAMN37831594-rid19836943.guided.14, whole genome shotgun sequence	4465..4902	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWNW010000003.1	150608..151477	98.966	870	0						
GCA_032731505.1_PDT001940710.1_genomic.fna	Salmonella_enterica	0.522	191.427 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWNX010000001.1 Salmonella enterica strain PNUSAS391433 SAMN37831591-rid19839683.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWNX010000047.1 Salmonella enterica strain PNUSAS391433 SAMN37831591-rid19839683.guided.34, whole genome shotgun sequence	10577..11014	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWNX010000002.1	208058..208926	99.77	870	0						
GCA_032731525.1_PDT001940485.1_genomic.fna	Salmonella_enterica	0.516	279.947 KB	6	aroC_30,dnaN_28,hemD_31,hisD_27,purE_467,sucA_29,thrA_476	1869	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCRY)	aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_467	sucA	100	100	sucA_29	thrA	100	100	thrA_476	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNWNY010000009.1 Salmonella enterica strain PNUSAS390820 SAMN37831417-rid19836223.denovo.09, whole genome shotgun sequence	4985..5422	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNWNY010000047.1 Salmonella enterica strain PNUSAS390820 SAMN37831417-rid19836223.guided.35, whole genome shotgun sequence	1780..2217	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNWNY010000024.1 Salmonella enterica strain PNUSAS390820 SAMN37831417-rid19836223.denovo.24, whole genome shotgun sequence	22134..22726																																																																	
GCA_032731545.1_PDT001940120.1_genomic.fna	Salmonella_enterica	0.5224	153.695 KB	11	aroC_41,dnaN_494,hemD_3,hisD_7,purE_5,sucA_6,thrA_10	3304	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_494	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_6	thrA	100	100	thrA_10	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFWI010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025347 SAMN37819598-rid19827943.denovo.03, whole genome shotgun sequence	150090..150527	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFWI010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025347 SAMN37819598-rid19827943.guided.14, whole genome shotgun sequence	44272..44709	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQFWI010000007.1	121204..122073	99.425	870	0						
GCA_032731585.1_PDT001788076.1_genomic.fna	Salmonella_enterica	0.5214	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWOA010000001.1 Salmonella enterica strain PNUSAS357933 SAMN35880500-rid18543553.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWOA010000025.1 Salmonella enterica strain PNUSAS357933 SAMN35880500-rid18543553.guided.13, whole genome shotgun sequence	41832..42269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWOA010000002.1	94005..94874	98.966	870	0						
GCA_032731605.1_PDT001788073.1_genomic.fna	Salmonella_enterica	0.5199	162.398 KB	10	aroC_110,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2711	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_110	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNWOD010000001.1 Salmonella enterica strain PNUSAS357942 SAMN35880509-rid18543543.denovo.01, whole genome shotgun sequence	42641..43078	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNWOD010000054.1 Salmonella enterica strain PNUSAS357942 SAMN35880509-rid18543543.guided.37, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNWOD010000035.1 Salmonella enterica strain PNUSAS357942 SAMN35880509-rid18543543.denovo.35, whole genome shotgun sequence	2610..3252																																																																	
GCA_032731665.1_PDT001788072.1_genomic.fna	Salmonella_enterica	0.521	275.207 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWOE010000001.1 Salmonella enterica strain PNUSAS357945 SAMN35880496-rid18543933.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWOE010000036.1 Salmonella enterica strain PNUSAS357945 SAMN35880496-rid18543933.guided.23, whole genome shotgun sequence	31741..32178	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWOE010000004.1	175008..175876	99.77	870	0						
GCA_032731685.1_PDT001788071.1_genomic.fna	Salmonella_enterica	0.5218	664.358 KB	3	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWOF010000002.1 Salmonella enterica strain PNUSAS357938 SAMN35880505-rid18543533.denovo.02, whole genome shotgun sequence	624771..625208	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWOF010000024.1 Salmonella enterica strain PNUSAS357938 SAMN35880505-rid18543533.guided.17, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032731705.1_PDT001788070.1_genomic.fna	Salmonella_enterica	0.5211	729.707 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWOG010000001.1 Salmonella enterica strain PNUSAS358203 SAMN35880712-rid18543923.denovo.01, whole genome shotgun sequence	293266..293703	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWOG010000021.1 Salmonella enterica strain PNUSAS358203 SAMN35880712-rid18543923.guided.12, whole genome shotgun sequence	43913..44350	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWOG010000016.1 Salmonella enterica strain PNUSAS358203 SAMN35880712-rid18543923.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNWOG010000013.1 Salmonella enterica strain PNUSAS358203 SAMN35880712-rid18543923.denovo.14, whole genome shotgun sequence	4416..4677																																																avrA	ABNWOG010000003.1	553642..554511	99.54	870	0						
GCA_032731725.1_PDT001788069.1_genomic.fna	Salmonella_enterica	0.5212	406.403 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWOH010000001.1 Salmonella enterica strain PNUSAS357940 SAMN35880507-rid18543913.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWOH010000026.1 Salmonella enterica strain PNUSAS357940 SAMN35880507-rid18543913.guided.22, whole genome shotgun sequence	4038..4475	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWOH010000018.1 Salmonella enterica strain PNUSAS357940 SAMN35880507-rid18543913.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNWOH010000019.1 Salmonella enterica strain PNUSAS357940 SAMN35880507-rid18543913.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABNWOH010000002.1	583754..584623	99.54	870	0						
GCA_032731745.1_PDT001788068.1_genomic.fna	Salmonella_enterica	0.5209	476.312 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWOI010000001.1 Salmonella enterica strain PNUSAS358202 SAMN35880714-rid18543523.denovo.01, whole genome shotgun sequence	293266..293703	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWOI010000024.1 Salmonella enterica strain PNUSAS358202 SAMN35880714-rid18543523.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWOI010000017.1 Salmonella enterica strain PNUSAS358202 SAMN35880714-rid18543523.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNWOI010000019.1 Salmonella enterica strain PNUSAS358202 SAMN35880714-rid18543523.denovo.22, whole genome shotgun sequence	3436..3697																																																avrA	ABNWOI010000002.1	553432..554301	99.54	870	0						
GCA_032731765.1_PDT001788066.1_genomic.fna	Salmonella_enterica	0.5224	443.924 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWOK010000001.1 Salmonella enterica strain PNUSAS357937 SAMN35880504-rid18543503.denovo.01, whole genome shotgun sequence	454798..455235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWOK010000028.1 Salmonella enterica strain PNUSAS357937 SAMN35880504-rid18543503.guided.18, whole genome shotgun sequence	30293..30730	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWOK010000002.1	129887..130756	98.966	870	0						
GCA_032731785.1_PDT001788067.1_genomic.fna	Salmonella_enterica	0.5214	305.822 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWOJ010000001.1 Salmonella enterica strain PNUSAS358200 SAMN35880709-rid18543513.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWOJ010000025.1 Salmonella enterica strain PNUSAS358200 SAMN35880709-rid18543513.guided.20, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWOJ010000020.1 Salmonella enterica strain PNUSAS358200 SAMN35880709-rid18543513.denovo.22, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNWOJ010000021.1 Salmonella enterica strain PNUSAS358200 SAMN35880709-rid18543513.denovo.24, whole genome shotgun sequence	3382..3643																																																avrA	ABNWOJ010000006.1	177101..177970	99.54	870	0						
GCA_032731805.1_PDT001788065.1_genomic.fna	Salmonella_enterica	0.5213	489.854 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWOL010000001.1 Salmonella enterica strain PNUSAS357935 SAMN35880502-rid18543903.denovo.01, whole genome shotgun sequence	821204..821641	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWOL010000025.1 Salmonella enterica strain PNUSAS357935 SAMN35880502-rid18543903.guided.17, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWOL010000016.1 Salmonella enterica strain PNUSAS357935 SAMN35880502-rid18543903.denovo.18, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNWOL010000017.1 Salmonella enterica strain PNUSAS357935 SAMN35880502-rid18543903.denovo.19, whole genome shotgun sequence	3404..3665																																																avrA	ABNWOL010000002.1	553187..554056	99.54	870	0						
GCA_032731825.1_PDT001788061.1_genomic.fna	Salmonella_enterica	0.5184	223.648 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNWOP010000004.1 Salmonella enterica strain PNUSAS357943 SAMN35880510-rid18543483.denovo.04, whole genome shotgun sequence	147579..148016	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNWOP010000050.1 Salmonella enterica strain PNUSAS357943 SAMN35880510-rid18543483.guided.23, whole genome shotgun sequence	2141..2578	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABNWOP010000029.1 Salmonella enterica strain PNUSAS357943 SAMN35880510-rid18543483.denovo.31, whole genome shotgun sequence	7578..7899																																																																	
GCA_032731845.1_PDT001788062.1_genomic.fna	Salmonella_enterica	0.5203	323.814 KB	5	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWOO010000001.1 Salmonella enterica strain PNUSAS358204 SAMN35880711-rid18543883.denovo.01, whole genome shotgun sequence	482600..483037	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWOO010000048.1 Salmonella enterica strain PNUSAS358204 SAMN35880711-rid18543883.guided.32, whole genome shotgun sequence	17215..17652	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNWOO010000018.1 Salmonella enterica strain PNUSAS358204 SAMN35880711-rid18543883.denovo.18, whole genome shotgun sequence	44790..45432	enterobacteriales	IncFII(S)	100	262 / 262	ABNWOO010000018.1 Salmonella enterica strain PNUSAS358204 SAMN35880711-rid18543883.denovo.18, whole genome shotgun sequence	29444..29705		enterobacteriales	IncX1	98.13	374 / 377	ABNWOO010000021.1 Salmonella enterica strain PNUSAS358204 SAMN35880711-rid18543883.denovo.21, whole genome shotgun sequence	31782..32155																																									avrA	ABNWOO010000003.1	207522..208391	99.885	870	0						
GCA_032731865.1_PDT001788064.1_genomic.fna	Salmonella_enterica	0.5222	396.504 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNWOM010000001.1 Salmonella enterica strain PNUSAS357936 SAMN35880503-rid18543893.denovo.01, whole genome shotgun sequence	684112..684549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNWOM010000023.1 Salmonella enterica strain PNUSAS357936 SAMN35880503-rid18543893.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWOM010000002.1	563792..564661	99.77	870	0						
GCA_032731875.1_PDT001788063.1_genomic.fna	Salmonella_enterica	0.5225	424.179 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNWON010000001.1 Salmonella enterica strain PNUSAS357939 SAMN35880506-rid18543493.denovo.01, whole genome shotgun sequence	543945..544382	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNWON010000025.1 Salmonella enterica strain PNUSAS357939 SAMN35880506-rid18543493.guided.17, whole genome shotgun sequence	15915..16352	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032731905.1_PDT001788060.1_genomic.fna	Salmonella_enterica	0.5214	489.863 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWOQ010000001.1 Salmonella enterica strain PNUSAS357941 SAMN35880508-rid18543873.denovo.01, whole genome shotgun sequence	542687..543124	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWOQ010000025.1 Salmonella enterica strain PNUSAS357941 SAMN35880508-rid18543873.guided.20, whole genome shotgun sequence	9911..10348	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWOQ010000018.1 Salmonella enterica strain PNUSAS357941 SAMN35880508-rid18543873.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNWOQ010000019.1 Salmonella enterica strain PNUSAS357941 SAMN35880508-rid18543873.denovo.22, whole genome shotgun sequence	3392..3653																																																avrA	ABNWOQ010000002.1	553636..554505	99.54	870	0						
GCA_032731925.1_PDT001788059.1_genomic.fna	Salmonella_enterica	0.5203	490.112 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWOR010000001.1 Salmonella enterica strain PNUSAS357934 SAMN35880501-rid18543863.denovo.01, whole genome shotgun sequence	774297..774734	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWOR010000025.1 Salmonella enterica strain PNUSAS357934 SAMN35880501-rid18543863.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWOR010000017.1 Salmonella enterica strain PNUSAS357934 SAMN35880501-rid18543863.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNWOR010000018.1 Salmonella enterica strain PNUSAS357934 SAMN35880501-rid18543863.denovo.20, whole genome shotgun sequence	3390..3651		enterobacteriales	IncX1	98.93	374 / 374	ABNWOR010000013.1 Salmonella enterica strain PNUSAS357934 SAMN35880501-rid18543863.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNWOR010000002.1	553623..554492	99.54	870	0						
GCA_032731965.1_PDT001788056.1_genomic.fna	Salmonella_enterica	0.5219	136.503 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWOT010000006.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313327 SAMN35881444-rid18543453.denovo.06, whole genome shotgun sequence	20192..20629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWOT010000072.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313327 SAMN35881444-rid18543453.guided.43, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWOT010000049.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313327 SAMN35881444-rid18543453.denovo.52, whole genome shotgun sequence	6838..7480	enterobacteriales	IncFII(S)	100	262 / 262	ABNWOT010000051.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313327 SAMN35881444-rid18543453.denovo.54, whole genome shotgun sequence	3412..3673																																																avrA	ABNWOT010000001.1	553636..554505	99.54	870	0						
GCA_032732005.1_PDT001940930.1_genomic.fna	Salmonella_enterica	0.5211	257.73 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWOW010000001.1 Salmonella enterica strain PNUSAS391575 SAMN37844995-rid19838983.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWOW010000051.1 Salmonella enterica strain PNUSAS391575 SAMN37844995-rid19838983.guided.29, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNWOW010000017.1 Salmonella enterica strain PNUSAS391575 SAMN37844995-rid19838983.denovo.17, whole genome shotgun sequence	48433..49075	enterobacteriales	IncFII(S)	100	262 / 262	ABNWOW010000017.1 Salmonella enterica strain PNUSAS391575 SAMN37844995-rid19838983.denovo.17, whole genome shotgun sequence	64160..64421		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNWOW010000021.1 Salmonella enterica strain PNUSAS391575 SAMN37844995-rid19838983.denovo.21, whole genome shotgun sequence	62311..62452																																									avrA	ABNWOW010000002.1	209211..210079	100	869	0						
GCA_032732025.1_PDT001940926.1_genomic.fna	Salmonella_enterica	0.5221	287.041 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	5	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,floR,floR,qnrS1,qnrS1,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),IncFIC(FII),IncR,IncR	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNWOV010000010.1 Salmonella enterica strain PNUSAS391569 SAMN37844983-rid19837543.denovo.10, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNWOV010000040.1 Salmonella enterica strain PNUSAS391569 SAMN37844983-rid19837543.guided.37, whole genome shotgun sequence	288..725	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNWOV010000023.1 Salmonella enterica strain PNUSAS391569 SAMN37844983-rid19837543.denovo.24, whole genome shotgun sequence	31980..32840	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNWOV010000037.1 Salmonella enterica strain PNUSAS391569 SAMN37844983-rid19837543.guided.27, whole genome shotgun sequence	1609..2469	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNWOV010000021.1 Salmonella enterica strain PNUSAS391569 SAMN37844983-rid19837543.denovo.21, whole genome shotgun sequence	41260..42473	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNWOV010000039.1 Salmonella enterica strain PNUSAS391569 SAMN37844983-rid19837543.guided.34, whole genome shotgun sequence	2073..3286	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNWOV010000023.1 Salmonella enterica strain PNUSAS391569 SAMN37844983-rid19837543.denovo.24, whole genome shotgun sequence	680..1336	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNWOV010000041.1 Salmonella enterica strain PNUSAS391569 SAMN37844983-rid19837543.guided.38, whole genome shotgun sequence	400..1056	Ciprofloxacin	AB187515	tet(A)	100	1275/1275	ABNWOV010000021.1 Salmonella enterica strain PNUSAS391569 SAMN37844983-rid19837543.denovo.21, whole genome shotgun sequence	43074..44348	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNWOV010000039.1 Salmonella enterica strain PNUSAS391569 SAMN37844983-rid19837543.guided.34, whole genome shotgun sequence	3887..5161	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNWOV010000032.1 Salmonella enterica strain PNUSAS391569 SAMN37844983-rid19837543.denovo.36, whole genome shotgun sequence	186..316	enterobacteriales	IncFIC(FII)	94.19	499 / 499	ABNWOV010000021.1 Salmonella enterica strain PNUSAS391569 SAMN37844983-rid19837543.denovo.21, whole genome shotgun sequence	36626..37122		enterobacteriales	IncR	100	251 / 251	ABNWOV010000023.1 Salmonella enterica strain PNUSAS391569 SAMN37844983-rid19837543.denovo.24, whole genome shotgun sequence	10826..11076		enterobacteriales	IncR	100	251 / 251	ABNWOV010000037.1 Salmonella enterica strain PNUSAS391569 SAMN37844983-rid19837543.guided.27, whole genome shotgun sequence	23373..23623																																		avrA	ABNWOV010000015.1	39877..40746	98.966	870	0						
GCA_032732045.1_PDT001940924.1_genomic.fna	Salmonella_enterica	0.5197	366.643 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWOX010000002.1 Salmonella enterica strain PNUSAS391581 SAMN37844982-rid19837533.denovo.02, whole genome shotgun sequence	477381..477818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWOX010000040.1 Salmonella enterica strain PNUSAS391581 SAMN37844982-rid19837533.guided.26, whole genome shotgun sequence	3889..4326	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNWOX010000016.1 Salmonella enterica strain PNUSAS391581 SAMN37844982-rid19837533.denovo.16, whole genome shotgun sequence	2465..2998	enterobacteriales	IncX1	98.4	374 / 374	ABNWOX010000022.1 Salmonella enterica strain PNUSAS391581 SAMN37844982-rid19837533.denovo.22, whole genome shotgun sequence	6956..7329																																																avrA	ABNWOX010000013.1	95075..95945	99.196	871	0						
GCA_032732065.1_PDT001940914.1_genomic.fna	Salmonella_enterica	0.5219	381.264 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWOZ010000001.1 Salmonella enterica strain PNUSAS391649 SAMN37844947-rid19837503.denovo.01, whole genome shotgun sequence	458316..458753	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWOZ010000029.1 Salmonella enterica strain PNUSAS391649 SAMN37844947-rid19837503.guided.19, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWOZ010000007.1	93862..94731	99.77	870	0						
GCA_032732085.1_PDT001940912.1_genomic.fna	Salmonella_enterica	0.5208	412.06 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWPA010000001.1 Salmonella enterica strain PNUSAS391642 SAMN37844941-rid19838933.denovo.01, whole genome shotgun sequence	477459..477896	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWPA010000048.1 Salmonella enterica strain PNUSAS391642 SAMN37844941-rid19838933.guided.17, whole genome shotgun sequence	21824..22261	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWPA010000002.1	504322..505192	99.196	871	0						
GCA_032732105.1_PDT001940905.1_genomic.fna	Salmonella_enterica	0.5205	394.524 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWPB010000001.1 Salmonella enterica strain PNUSAS391650 SAMN37844954-rid19838913.denovo.01, whole genome shotgun sequence	556627..557064	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWPB010000023.1 Salmonella enterica strain PNUSAS391650 SAMN37844954-rid19838913.guided.19, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWPB010000002.1	556197..557065	99.425	870	0						
GCA_032732125.1_PDT001940900.1_genomic.fna	Salmonella_enterica	0.5207	430.47 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWPC010000002.1 Salmonella enterica strain PNUSAS391661 SAMN37844943-rid19838893.denovo.02, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWPC010000050.1 Salmonella enterica strain PNUSAS391661 SAMN37844943-rid19838893.guided.19, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWPC010000001.1	992748..993618	99.196	871	0						
GCA_032732185.1_PDT001940833.1_genomic.fna	Salmonella_enterica	0.5225	70.113 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWPG010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314578 SAMN37844075-rid19838663.denovo.003, whole genome shotgun sequence	157914..158351	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWPG010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314578 SAMN37844075-rid19838663.denovo.063, whole genome shotgun sequence	22844..23635	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWPG010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314578 SAMN37844075-rid19838663.denovo.063, whole genome shotgun sequence	22844..23635	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNWPG010000137.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314578 SAMN37844075-rid19838663.guided.065, whole genome shotgun sequence	20627..21064	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWPG010000142.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314578 SAMN37844075-rid19838663.guided.117, whole genome shotgun sequence	765..1556	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWPG010000142.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314578 SAMN37844075-rid19838663.guided.117, whole genome shotgun sequence	765..1556	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNWPG010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314578 SAMN37844075-rid19838663.denovo.063, whole genome shotgun sequence	21500..22339	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWPG010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314578 SAMN37844075-rid19838663.guided.103, whole genome shotgun sequence	890..1729	Sulfamethoxazole	U12338	sul1	100	664/828	ABNWPG010000142.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314578 SAMN37844075-rid19838663.guided.117, whole genome shotgun sequence	2061..2724	Sulfamethoxazole	AY522923	tet(A)	100	1200/1200	ABNWPG010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314578 SAMN37844075-rid19838663.denovo.063, whole genome shotgun sequence	7784..8983	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWPG010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314578 SAMN37844075-rid19838663.guided.090, whole genome shotgun sequence	2834..4033	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																											gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNWPG010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314578 SAMN37844075-rid19838663.denovo.082, whole genome shotgun sequence	12585..13144																																																						avrA	ABNWPG010000005.1	105362..106231	99.655	870	0						
GCA_032732225.1_PDT001940827.1_genomic.fna	Salmonella_enterica	0.5223	91.911 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWPH010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314559 SAMN37844052-rid19838643.denovo.027, whole genome shotgun sequence	52283..52720	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWPH010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314559 SAMN37844052-rid19838643.denovo.063, whole genome shotgun sequence	18474..19265	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWPH010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314559 SAMN37844052-rid19838643.denovo.063, whole genome shotgun sequence	18474..19265	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNWPH010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314559 SAMN37844052-rid19838643.guided.048, whole genome shotgun sequence	31736..32173	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWPH010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314559 SAMN37844052-rid19838643.guided.082, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWPH010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314559 SAMN37844052-rid19838643.guided.082, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNWPH010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314559 SAMN37844052-rid19838643.denovo.094, whole genome shotgun sequence	928..1803	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNWPH010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314559 SAMN37844052-rid19838643.guided.093, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNWPH010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314559 SAMN37844052-rid19838643.denovo.063, whole genome shotgun sequence	17130..17969	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWPH010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314559 SAMN37844052-rid19838643.guided.082, whole genome shotgun sequence	2393..3232	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNWPH010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314559 SAMN37844052-rid19838643.denovo.063, whole genome shotgun sequence	3414..4613	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWPH010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314559 SAMN37844052-rid19838643.guided.080, whole genome shotgun sequence	7337..8536	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNWPH010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314559 SAMN37844052-rid19838643.denovo.078, whole genome shotgun sequence	6983..7542																																																						avrA	ABNWPH010000004.1	81701..82570	99.655	870	0						
GCA_032732245.1_PDT001940788.1_genomic.fna	Salmonella_enterica	0.5226	658.588 KB	2	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWPJ010000001.1 Salmonella enterica strain FDA1234226-S010-019 SAMN37844011-rid19838543.denovo.01, whole genome shotgun sequence	1302402..1302839	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWPJ010000019.1 Salmonella enterica strain FDA1234226-S010-019 SAMN37844011-rid19838543.guided.13, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032732265.1_PDT001940803.1_genomic.fna	Salmonella_enterica	0.521	283.239 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWPI010000003.1 Salmonella enterica strain PNUSAS391614 SAMN37844017-rid19838583.denovo.03, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWPI010000030.1 Salmonella enterica strain PNUSAS391614 SAMN37844017-rid19838583.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWPI010000018.1 Salmonella enterica strain PNUSAS391614 SAMN37844017-rid19838583.denovo.19, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNWPI010000022.1 Salmonella enterica strain PNUSAS391614 SAMN37844017-rid19838583.denovo.25, whole genome shotgun sequence	3414..3675																																																avrA	ABNWPI010000001.1	585636..586505	99.54	870	0						
GCA_032732285.1_PDT001940756.1_genomic.fna	Salmonella_enterica	0.521	401.56 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWPM010000004.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.denovo.04, whole genome shotgun sequence	159439..159876	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWPM010000020.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.denovo.20, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNWPM010000020.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.denovo.20, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNWPM010000032.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.guided.22, whole genome shotgun sequence	1..837	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNWPM010000032.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.guided.22, whole genome shotgun sequence	837..1640	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNWPM010000033.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.guided.25, whole genome shotgun sequence	12143..12580	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNWPM010000020.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.denovo.20, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNWPM010000032.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.guided.22, whole genome shotgun sequence	30857..32002	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABNWPM010000020.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.denovo.20, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNWPM010000036.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.guided.30, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNWPM010000020.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.denovo.20, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNWPM010000032.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.guided.22, whole genome shotgun sequence	1701..2516	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNWPM010000020.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.denovo.20, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNWPM010000037.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.guided.32, whole genome shotgun sequence	1260..2534	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABNWPM010000021.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.denovo.21, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNWPM010000017.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.denovo.17, whole genome shotgun sequence	29334..29593		enterobacteriales	IncX1	98.66	374 / 374	ABNWPM010000017.1 Salmonella enterica strain PNUSAS391497 SAMN37831713-rid19838433.denovo.17, whole genome shotgun sequence	65188..65561																																									avrA	ABNWPM010000010.1	39423..40291	99.54	870	0						
GCA_032732325.1_PDT001940753.1_genomic.fna	Salmonella_enterica	0.5213	478.612 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWPL010000001.1 Salmonella enterica strain PNUSAS391506 SAMN37831690-rid19838423.denovo.01, whole genome shotgun sequence	162458..162895	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWPL010000026.1 Salmonella enterica strain PNUSAS391506 SAMN37831690-rid19838423.guided.18, whole genome shotgun sequence	2005..2442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWPL010000014.1 Salmonella enterica strain PNUSAS391506 SAMN37831690-rid19838423.denovo.14, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABNWPL010000014.1 Salmonella enterica strain PNUSAS391506 SAMN37831690-rid19838423.denovo.14, whole genome shotgun sequence	4078..4339																																																avrA	ABNWPL010000002.1	584926..585795	99.54	870	0						
GCA_032732345.1_PDT001940745.1_genomic.fna	Salmonella_enterica	0.5215	478.496 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWPN010000001.1 Salmonella enterica strain PNUSAS391507 SAMN37831695-rid19839793.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWPN010000026.1 Salmonella enterica strain PNUSAS391507 SAMN37831695-rid19839793.guided.19, whole genome shotgun sequence	5660..6097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWPN010000013.1 Salmonella enterica strain PNUSAS391507 SAMN37831695-rid19839793.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNWPN010000013.1 Salmonella enterica strain PNUSAS391507 SAMN37831695-rid19839793.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNWPN010000002.1	553083..553952	99.54	870	0						
GCA_032732365.1_PDT001940744.1_genomic.fna	Salmonella_enterica	0.5217	202.867 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWPO010000002.1 Salmonella enterica strain PNUSAS391495 SAMN37831684-rid19839783.denovo.02, whole genome shotgun sequence	145375..145812	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWPO010000055.1 Salmonella enterica strain PNUSAS391495 SAMN37831684-rid19839783.guided.39, whole genome shotgun sequence	1920..2357	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWPO010000003.1	207907..208775	99.77	870	0						
GCA_032732385.1_PDT001940743.1_genomic.fna	Salmonella_enterica	0.5216	229.235 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNWPP010000001.1 Salmonella enterica strain PNUSAS391493 SAMN37831711-rid19838373.denovo.01, whole genome shotgun sequence	494719..495156	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNWPP010000034.1 Salmonella enterica strain PNUSAS391493 SAMN37831711-rid19838373.guided.24, whole genome shotgun sequence	9761..10198	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWPP010000002.1	144854..145723	99.31	870	0						
GCA_032732405.1_PDT001940736.1_genomic.fna	Salmonella_enterica	0.5205	469.75 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWPR010000001.1 Salmonella enterica strain PNUSAS391492 SAMN37831712-rid19838343.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWPR010000028.1 Salmonella enterica strain PNUSAS391492 SAMN37831712-rid19838343.guided.18, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWPR010000017.1 Salmonella enterica strain PNUSAS391492 SAMN37831712-rid19838343.denovo.17, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNWPR010000017.1 Salmonella enterica strain PNUSAS391492 SAMN37831712-rid19838343.denovo.17, whole genome shotgun sequence	5032..5293		enterobacteriales	IncX1	98.93	374 / 374	ABNWPR010000018.1 Salmonella enterica strain PNUSAS391492 SAMN37831712-rid19838343.denovo.20, whole genome shotgun sequence	32011..32384																																									avrA	ABNWPR010000006.1	174992..175861	99.54	870	0						
GCA_032732425.1_PDT001940738.1_genomic.fna	Salmonella_enterica	0.5213	399.273 KB	4	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWPQ010000001.1 Salmonella enterica strain PNUSAS391491 SAMN37831708-rid19838353.denovo.01, whole genome shotgun sequence	502145..502582	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWPQ010000036.1 Salmonella enterica strain PNUSAS391491 SAMN37831708-rid19838353.guided.19, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032732445.1_PDT001940734.1_genomic.fna	Salmonella_enterica	0.5201	410.014 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	ColRNAI,IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWPS010000001.1 Salmonella enterica strain PNUSAS391494 SAMN37831710-rid19839763.denovo.01, whole genome shotgun sequence	293265..293702	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWPS010000040.1 Salmonella enterica strain PNUSAS391494 SAMN37831710-rid19839763.guided.21, whole genome shotgun sequence	5258..5695	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABNWPS010000026.1 Salmonella enterica strain PNUSAS391494 SAMN37831710-rid19839763.denovo.29, whole genome shotgun sequence	4022..4152	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWPS010000019.1 Salmonella enterica strain PNUSAS391494 SAMN37831710-rid19839763.denovo.20, whole genome shotgun sequence	34371..35013		enterobacteriales	IncFII(S)	100	262 / 262	ABNWPS010000025.1 Salmonella enterica strain PNUSAS391494 SAMN37831710-rid19839763.denovo.27, whole genome shotgun sequence	5032..5293		enterobacteriales	IncX1	98.66	374 / 374	ABNWPS010000023.1 Salmonella enterica strain PNUSAS391494 SAMN37831710-rid19839763.denovo.25, whole genome shotgun sequence	13153..13526																																		avrA	ABNWPS010000002.1	505833..506702	99.54	870	0						
GCA_032732465.1_PDT001940729.1_genomic.fna	Salmonella_enterica	0.5202	202.867 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(AP001918),IncFII(pCoo),IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWPT010000001.1 Salmonella enterica strain PNUSAS391500 SAMN37831688-rid19839743.denovo.01, whole genome shotgun sequence	232954..233391	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWPT010000056.1 Salmonella enterica strain PNUSAS391500 SAMN37831688-rid19839743.guided.36, whole genome shotgun sequence	14362..14799	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	ABNWPT010000017.1 Salmonella enterica strain PNUSAS391500 SAMN37831688-rid19839743.denovo.17, whole genome shotgun sequence	75550..76231	enterobacteriales	IncFII(pCoo)	96.18	262 / 262	ABNWPT010000017.1 Salmonella enterica strain PNUSAS391500 SAMN37831688-rid19839743.denovo.17, whole genome shotgun sequence	12348..12609		enterobacteriales	IncI2(Delta)	100	316 / 316	ABNWPT010000022.1 Salmonella enterica strain PNUSAS391500 SAMN37831688-rid19839743.denovo.22, whole genome shotgun sequence	26502..26817																																									avrA	ABNWPT010000003.1	207907..208775	99.77	870	0						
GCA_032732485.1_PDT001940922.1_genomic.fna	Salmonella_enterica	0.5218	393.442 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWOY010000001.1 Salmonella enterica strain PNUSAS391592 SAMN37844961-rid19838963.denovo.01, whole genome shotgun sequence	458318..458755	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWOY010000026.1 Salmonella enterica strain PNUSAS391592 SAMN37844961-rid19838963.guided.16, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWOY010000003.1	507719..508588	99.655	870	0						
GCA_032732505.1_PDT001940725.1_genomic.fna	Salmonella_enterica	0.5215	191.42 KB	8	aroC_10,dnaN_7,hemD_370,hisD_9,purE_5,sucA_9,thrA_2	2076	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_370	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWPU010000001.1 Salmonella enterica strain PNUSAS391503 SAMN37831689-rid19838303.denovo.01, whole genome shotgun sequence	232954..233391	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWPU010000050.1 Salmonella enterica strain PNUSAS391503 SAMN37831689-rid19838303.guided.44, whole genome shotgun sequence	893..1330	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWPU010000004.1	156079..156947	99.77	870	0						
GCA_032732525.1_PDT001940719.1_genomic.fna	Salmonella_enterica	0.521	434.591 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWPV010000001.1 Salmonella enterica strain PNUSAS391438 SAMN37831598-rid19839703.denovo.01, whole genome shotgun sequence	481990..482427	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWPV010000021.1 Salmonella enterica strain PNUSAS391438 SAMN37831598-rid19839703.guided.16, whole genome shotgun sequence	8101..8538	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWPV010000004.1	151159..152028	99.77	870	0						
GCA_032732545.1_PDT001940718.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWPW010000001.1 Salmonella enterica strain PNUSAS391446 SAMN37831599-rid19839693.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWPW010000025.1 Salmonella enterica strain PNUSAS391446 SAMN37831599-rid19839693.guided.13, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWPW010000016.1 Salmonella enterica strain PNUSAS391446 SAMN37831599-rid19839693.denovo.17, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNWPW010000018.1 Salmonella enterica strain PNUSAS391446 SAMN37831599-rid19839693.denovo.20, whole genome shotgun sequence	3390..3651																																																avrA	ABNWPW010000002.1	553636..554505	99.54	870	0						
GCA_032732565.1_PDT001940712.1_genomic.fna	Salmonella_enterica	0.5223	639.953 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWPX010000001.1 Salmonella enterica strain PNUSAS391429 SAMN37831589-rid19836953.denovo.01, whole genome shotgun sequence	481948..482385	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWPX010000020.1 Salmonella enterica strain PNUSAS391429 SAMN37831589-rid19836953.guided.14, whole genome shotgun sequence	2176..2613	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWPX010000002.1	553560..554429	99.77	870	0						
GCA_032732585.1_PDT001940701.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWPY010000001.1 Salmonella enterica strain PNUSAS391445 SAMN37831583-rid19838223.denovo.01, whole genome shotgun sequence	774451..774888	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWPY010000025.1 Salmonella enterica strain PNUSAS391445 SAMN37831583-rid19838223.guided.16, whole genome shotgun sequence	5176..5613	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWPY010000015.1 Salmonella enterica strain PNUSAS391445 SAMN37831583-rid19838223.denovo.17, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNWPY010000016.1 Salmonella enterica strain PNUSAS391445 SAMN37831583-rid19838223.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABNWPY010000002.1	553642..554511	99.54	870	0						
GCA_032732605.1_PDT001940075.1_genomic.fna	Salmonella_enterica	0.5204	127.474 KB	14	aroC_454,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	1925	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		4	Col440I,IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_454	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFWK010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021597 SAMN37819521-rid19826523.denovo.06, whole genome shotgun sequence	17246..17683	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFWK010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021597 SAMN37819521-rid19826523.guided.25, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	DAQFWK010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021597 SAMN37819521-rid19826523.denovo.64, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQFWK010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021597 SAMN37819521-rid19826523.guided.63, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col440I	94.74	114 / 114	DAQFWK010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021597 SAMN37819521-rid19826523.denovo.66, whole genome shotgun sequence	1981..2094	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFWK010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021597 SAMN37819521-rid19826523.denovo.34, whole genome shotgun sequence	40527..41169		enterobacteriales	IncFII(S)	100	262 / 262	DAQFWK010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021597 SAMN37819521-rid19826523.denovo.55, whole genome shotgun sequence	3420..3681		enterobacteriales	IncX1	95.76	377 / 377	DAQFWK010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021597 SAMN37819521-rid19826523.denovo.57, whole genome shotgun sequence	4747..5123																																		avrA	DAQFWK010000005.1	115422..116291	99.54	870	0						
GCA_032732625.1_PDT001940142.1_genomic.fna	Salmonella_enterica	0.5213	141.265 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFWJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048502 SAMN37820066-rid19825083.denovo.01, whole genome shotgun sequence	145235..145672	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFWJ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048502 SAMN37820066-rid19825083.guided.12, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFWJ010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048502 SAMN37820066-rid19825083.denovo.60, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQFWJ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048502 SAMN37820066-rid19825083.denovo.17, whole genome shotgun sequence	48428..49070		enterobacteriales	IncFII(S)	100	262 / 262	DAQFWJ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048502 SAMN37820066-rid19825083.denovo.17, whole genome shotgun sequence	64155..64416																																									avrA	DAQFWJ010000005.1	98459..99328	99.885	870	0						
GCA_032732645.1_PDT001940481.1_genomic.fna	Salmonella_enterica	0.5208	700.533 KB	3	aroC_41,dnaN_42,hemD_43,hisD_501,purE_9,sucA_12,thrA_2	1567	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_501	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWQA010000001.1 Salmonella enterica strain PNUSAS390803 SAMN37831074-rid19836183.denovo.01, whole genome shotgun sequence	1390005..1390442	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWQA010000018.1 Salmonella enterica strain PNUSAS390803 SAMN37831074-rid19836183.guided.14, whole genome shotgun sequence	3272..3709	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNWQA010000007.1 Salmonella enterica strain PNUSAS390803 SAMN37831074-rid19836183.denovo.07, whole genome shotgun sequence	38587..39229																																																						avrA	ABNWQA010000003.1	559678..560547	99.425	870	0						
GCA_032732665.1_PDT001940488.1_genomic.fna	Salmonella_enterica	0.517	310.468 KB	6	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNWPZ010000008.1 Salmonella enterica strain PNUSAS390800 SAMN37831411-rid19836253.denovo.08, whole genome shotgun sequence	7466..7903	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNWPZ010000063.1 Salmonella enterica strain PNUSAS390800 SAMN37831411-rid19836253.guided.44, whole genome shotgun sequence	919..1356	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNWPZ010000009.1 Salmonella enterica strain PNUSAS390800 SAMN37831411-rid19836253.denovo.09, whole genome shotgun sequence	157667..158309	enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABNWPZ010000031.1 Salmonella enterica strain PNUSAS390800 SAMN37831411-rid19836253.denovo.31, whole genome shotgun sequence	505..1097																																																											
GCA_032732685.1_PDT001939848.1_genomic.fna	Salmonella_enterica	0.5217	89.762 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFWM010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046747 SAMN37819987-rid19831263.denovo.17, whole genome shotgun sequence	38025..38462	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFWM010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046747 SAMN37819987-rid19831263.guided.61, whole genome shotgun sequence	14015..14452	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFWM010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046747 SAMN37819987-rid19831263.denovo.15, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQFWM010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046747 SAMN37819987-rid19831263.denovo.15, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFWM010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046747 SAMN37819987-rid19831263.denovo.18, whole genome shotgun sequence	15829..15965																																									avrA	DAQFWM010000003.1	107915..108784	99.885	870	0						
GCA_032732705.1_PDT001939925.1_genomic.fna	Salmonella_enterica	0.5212	146.666 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87G	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFWL010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021604 SAMN37819523-rid19831273.denovo.02, whole genome shotgun sequence	17248..17685	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFWL010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021604 SAMN37819523-rid19831273.guided.27, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFWL010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021604 SAMN37819523-rid19831273.denovo.33, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQFWL010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00021604 SAMN37819523-rid19831273.denovo.48, whole genome shotgun sequence	3425..3686																																																avrA	DAQFWL010000006.1	115369..116238	99.54	870	0						
GCA_032732745.1_PDT001788053.1_genomic.fna	Salmonella_enterica	0.5218	110.745 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWQC010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313329 SAMN35881446-rid18543443.denovo.01, whole genome shotgun sequence	175685..176122	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWQC010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313329 SAMN35881446-rid18543443.denovo.43, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWQC010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313329 SAMN35881446-rid18543443.denovo.43, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNWQC010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313329 SAMN35881446-rid18543443.denovo.72, whole genome shotgun sequence	875..1900	Hygromycin	V01499	aac(3)-IV	100	646/777	ABNWQC010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313329 SAMN35881446-rid18543443.denovo.72, whole genome shotgun sequence	1..646	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNWQC010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313329 SAMN35881446-rid18543443.guided.42, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWQC010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313329 SAMN35881446-rid18543443.guided.42, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNWQC010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313329 SAMN35881446-rid18543443.guided.49, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNWQC010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313329 SAMN35881446-rid18543443.guided.73, whole genome shotgun sequence	247..1272	Hygromycin	V01499	aac(3)-IV	100	648/777	ABNWQC010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313329 SAMN35881446-rid18543443.guided.89, whole genome shotgun sequence	40..687	Gentamicin, Tobramycin	DQ241380	aac(3)-IV	99.85	648/777	ABNWQC010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313329 SAMN35881446-rid18543443.guided.90, whole genome shotgun sequence	40..687	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNWQC010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313329 SAMN35881446-rid18543443.denovo.43, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWQC010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313329 SAMN35881446-rid18543443.guided.42, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	99.92	1200/1200	ABNWQC010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313329 SAMN35881446-rid18543443.denovo.43, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNWQC010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313329 SAMN35881446-rid18543443.guided.42, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																															gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNWQC010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313329 SAMN35881446-rid18543443.denovo.33, whole genome shotgun sequence	36947..37506																																																						avrA	ABNWQC010000011.1	95072..95941	99.655	870	0						
GCA_032732785.1_PDT001788051.1_genomic.fna	Salmonella_enterica	0.5239	51.689 KB	29	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	1	IncN	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWQF010000059.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313328 SAMN35881445-rid18543433.denovo.060, whole genome shotgun sequence	14114..14551	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWQF010000159.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313328 SAMN35881445-rid18543433.guided.079, whole genome shotgun sequence	14145..14582	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNWQF010000113.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313328 SAMN35881445-rid18543433.denovo.115, whole genome shotgun sequence	2285..3484	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWQF010000160.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313328 SAMN35881445-rid18543433.guided.116, whole genome shotgun sequence	2118..3317	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncN	100	514 / 514	ABNWQF010000118.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313328 SAMN35881445-rid18543433.denovo.122, whole genome shotgun sequence	629..1142																																																																	
GCA_032732805.1_PDT001788050.1_genomic.fna	Salmonella_enterica	0.5223	80.064 KB	20	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNWQG010000023.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313326 SAMN35881409-rid18543823.denovo.023, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNWQG010000117.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313326 SAMN35881409-rid18543823.guided.084, whole genome shotgun sequence	8080..8517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNWQG010000089.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22313326 SAMN35881409-rid18543823.denovo.092, whole genome shotgun sequence	239..369																																																						avrA	ABNWQG010000008.1	108176..109045	99.425	870	0						
GCA_032732845.1_PDT001788046.1_genomic.fna	Salmonella_enterica	0.522	105.498 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWQJ010000026.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313323 SAMN35881406-rid18543413.denovo.26, whole genome shotgun sequence	17799..18236	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWQJ010000095.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313323 SAMN35881406-rid18543413.guided.51, whole genome shotgun sequence	10019..10456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWQJ010000058.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313323 SAMN35881406-rid18543413.denovo.60, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNWQJ010000062.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313323 SAMN35881406-rid18543413.denovo.65, whole genome shotgun sequence	3397..3658																																																avrA	ABNWQJ010000007.1	149559..150428	99.54	870	0						
GCA_032732865.1_PDT001788048.1_genomic.fna	Salmonella_enterica	0.5207	76.162 KB	20	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWQH010000011.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313324 SAMN35881407-rid18543803.denovo.011, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWQH010000144.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313324 SAMN35881407-rid18543803.guided.085, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	ABNWQH010000100.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313324 SAMN35881407-rid18543803.denovo.103, whole genome shotgun sequence	2099..2780	enterobacteriales	IncFII	96.56	262 / 261	ABNWQH010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313324 SAMN35881407-rid18543803.denovo.043, whole genome shotgun sequence	36476..36737		enterobacteriales	IncX1	100	373 / 373	ABNWQH010000079.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313324 SAMN35881407-rid18543803.denovo.081, whole genome shotgun sequence	2153..2525																																									avrA	ABNWQH010000041.1	39618..40487	99.655	870	0						
GCA_032732875.1_PDT001788047.1_genomic.fna	Salmonella_enterica	0.5236	53.745 KB	29	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWQI010000061.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313325 SAMN35881408-rid18543423.denovo.061, whole genome shotgun sequence	12501..12938	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWQI010000120.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313325 SAMN35881408-rid18543423.denovo.124, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWQI010000120.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313325 SAMN35881408-rid18543423.denovo.124, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWQI010000120.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313325 SAMN35881408-rid18543423.denovo.124, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWQI010000120.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313325 SAMN35881408-rid18543423.denovo.124, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWQI010000120.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313325 SAMN35881408-rid18543423.denovo.124, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNWQI010000164.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313325 SAMN35881408-rid18543423.guided.090, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWQI010000166.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313325 SAMN35881408-rid18543423.guided.123, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWQI010000166.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313325 SAMN35881408-rid18543423.guided.123, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWQI010000166.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313325 SAMN35881408-rid18543423.guided.123, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWQI010000166.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313325 SAMN35881408-rid18543423.guided.123, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWQI010000166.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313325 SAMN35881408-rid18543423.guided.123, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNWQI010000122.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313325 SAMN35881408-rid18543423.denovo.127, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWQI010000167.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313325 SAMN35881408-rid18543423.guided.126, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWQI010000018.1	61255..62124	99.655	870	0						
GCA_032732905.1_PDT001788045.1_genomic.fna	Salmonella_enterica	0.5234	90.211 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWQK010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313317 SAMN35881365-rid18543793.denovo.26, whole genome shotgun sequence	52249..52686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWQK010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313317 SAMN35881365-rid18543793.guided.52, whole genome shotgun sequence	15467..15904	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWQK010000005.1	95044..95913	99.655	870	0						
GCA_032732925.1_PDT001788044.1_genomic.fna	Salmonella_enterica	0.5216	59.767 KB	25	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	5	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNWQL010000020.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313321 SAMN35881378-rid18543783.denovo.020, whole genome shotgun sequence	11327..11764	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNWQL010000029.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313321 SAMN35881378-rid18543783.denovo.029, whole genome shotgun sequence	51395..52174	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	98.17	438/438	ABNWQL010000149.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313321 SAMN35881378-rid18543783.guided.067, whole genome shotgun sequence	14392..14829	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNWQL010000152.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313321 SAMN35881378-rid18543783.guided.098, whole genome shotgun sequence	2159..2938	Spectinomycin, Streptomycin	D43625	fosA7	97.16	423/423	ABNWQL010000046.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313321 SAMN35881378-rid18543783.denovo.046, whole genome shotgun sequence	37436..37858	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNWQL010000150.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313321 SAMN35881378-rid18543783.guided.071, whole genome shotgun sequence	18575..18997	Fosfomycin	LAPJ01000014	sul1	99.88	840/840	ABNWQL010000029.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313321 SAMN35881378-rid18543783.denovo.029, whole genome shotgun sequence	52679..53518	Sulfamethoxazole	U12338	sul1	99.88	840/840	ABNWQL010000152.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313321 SAMN35881378-rid18543783.guided.098, whole genome shotgun sequence	3443..4282	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNWQL010000094.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313321 SAMN35881378-rid18543783.denovo.100, whole genome shotgun sequence	6632..7831	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWQL010000153.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313321 SAMN35881378-rid18543783.guided.099, whole genome shotgun sequence	6673..7872	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWQL010000002.1	74937..75806	99.655	870	0						
GCA_032732945.1_PDT001788043.1_genomic.fna	Salmonella_enterica	0.522	118.374 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWQM010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWQM010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.denovo.45, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWQM010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.denovo.45, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNWQM010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.denovo.75, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNWQM010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.denovo.75, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNWQM010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.denovo.85, whole genome shotgun sequence	93..908	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	X62115	aac(6')-Iaa	97.49	438/438	ABNWQM010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.guided.39, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWQM010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.guided.66, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWQM010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.guided.66, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNWQM010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.guided.74, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNWQM010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.guided.74, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNWQM010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.guided.83, whole genome shotgun sequence	126..941	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	X62115	floR	98.19	1214/1215	ABNWQM010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.denovo.69, whole genome shotgun sequence	3189..4402	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNWQM010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.guided.71, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNWQM010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.denovo.45, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWQM010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.guided.66, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNWQM010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.denovo.45, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWQM010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.guided.61, whole genome shotgun sequence	1347..2546	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNWQM010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313315 SAMN35881368-rid18543773.denovo.49, whole genome shotgun sequence	9109..9668																																																						avrA	ABNWQM010000011.1	39524..40393	99.655	870	0						
GCA_032732965.1_PDT001788042.1_genomic.fna	Salmonella_enterica	0.5237	73.901 KB	21	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWQN010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313320 SAMN35881381-rid18543763.denovo.015, whole genome shotgun sequence	76128..76565	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWQN010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313320 SAMN35881381-rid18543763.guided.058, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWQN010000025.1	66638..67507	99.77	870	0						
GCA_032732985.1_PDT001788041.1_genomic.fna	Salmonella_enterica	0.5223	64.516 KB	25	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWQO010000009.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313319 SAMN35881380-rid18543403.denovo.009, whole genome shotgun sequence	93598..94035	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWQO010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313319 SAMN35881380-rid18543403.denovo.052, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWQO010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313319 SAMN35881380-rid18543403.denovo.052, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNWQO010000132.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313319 SAMN35881380-rid18543403.guided.073, whole genome shotgun sequence	15647..16084	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWQO010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313319 SAMN35881380-rid18543403.guided.091, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWQO010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313319 SAMN35881380-rid18543403.guided.091, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNWQO010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313319 SAMN35881380-rid18543403.denovo.052, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWQO010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313319 SAMN35881380-rid18543403.guided.091, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNWQO010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313319 SAMN35881380-rid18543403.denovo.052, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWQO010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313319 SAMN35881380-rid18543403.guided.071, whole genome shotgun sequence	1904..3103	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNWQO010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313319 SAMN35881380-rid18543403.denovo.069, whole genome shotgun sequence	9109..9668																																																						avrA	ABNWQO010000008.1	104227..105096	99.655	870	0						
GCA_032733005.1_PDT001940909.1_genomic.fna	Salmonella_enterica	0.5209	278.344 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,blaTEM-1B,blaTEM-1B,sul2,sul3,sul2,sul3,tet(B),tet(B)	0		2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWQQ010000001.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.denovo.01, whole genome shotgun sequence	458967..459404	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWQQ010000039.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.denovo.44, whole genome shotgun sequence	5..841	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNWQQ010000039.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.denovo.44, whole genome shotgun sequence	841..1644	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNWQQ010000044.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.denovo.51, whole genome shotgun sequence	1026..1886	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aac(6')-Iaa	100	438/438	ABNWQQ010000052.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.guided.15, whole genome shotgun sequence	36060..36497	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWQQ010000056.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.guided.43, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNWQQ010000056.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.guided.43, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNWQQ010000059.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.guided.52, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	blaTEM-1B	100	861/861	ABNWQQ010000045.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.denovo.54, whole genome shotgun sequence	128..988	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNWQQ010000060.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.guided.53, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNWQQ010000039.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.denovo.44, whole genome shotgun sequence	1705..2520	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNWQQ010000043.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.denovo.50, whole genome shotgun sequence	109..900	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNWQQ010000056.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.guided.43, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNWQQ010000058.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.guided.48, whole genome shotgun sequence	2051..2842	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNWQQ010000034.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.denovo.37, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNWQQ010000055.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.guided.38, whole genome shotgun sequence	4844..6049	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNWQQ010000030.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.denovo.32, whole genome shotgun sequence	19810..20491	enterobacteriales	IncFIC(FII)	94	500 / 499	ABNWQQ010000023.1 Salmonella enterica strain PNUSAS391644 SAMN37844952-rid19837493.denovo.24, whole genome shotgun sequence	55726..56222																																																avrA	ABNWQQ010000002.1	527928..528797	99.885	870	0						
GCA_032733025.1_PDT001940918.1_genomic.fna	Salmonella_enterica	0.5205	372.751 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWQP010000001.1 Salmonella enterica strain PNUSAS391576 SAMN37844963-rid19840293.denovo.01, whole genome shotgun sequence	477375..477812	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWQP010000028.1 Salmonella enterica strain PNUSAS391576 SAMN37844963-rid19840293.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNWQP010000017.1 Salmonella enterica strain PNUSAS391576 SAMN37844963-rid19840293.denovo.17, whole genome shotgun sequence	6118..6651																																																						avrA	ABNWQP010000010.1	184831..185701	99.196	871	0						
GCA_032733045.1_PDT001940901.1_genomic.fna	Salmonella_enterica	0.5213	417.497 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWQR010000001.1 Salmonella enterica strain PNUSAS391645 SAMN37844953-rid19840733.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWQR010000053.1 Salmonella enterica strain PNUSAS391645 SAMN37844953-rid19840733.guided.23, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWQR010000011.1	93870..94740	99.196	871	0						
GCA_032733065.1_PDT001940836.1_genomic.fna	Salmonella_enterica	0.5212	121.402 KB	13	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWQT010000001.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS22314580 SAMN37844077-rid19840673.denovo.01, whole genome shotgun sequence	462162..462599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWQT010000067.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS22314580 SAMN37844077-rid19840673.guided.42, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWQT010000016.1	103229..104098	99.195	870	0						
GCA_032733085.1_PDT001940889.1_genomic.fna	Salmonella_enterica	0.5209	362.342 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	-	Salmonella enterica subspecies enterica (subspecies I)	I 9:l,z28:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWQS010000007.1 Salmonella enterica strain PNUSAS391627 SAMN37844524-rid19837453.denovo.07, whole genome shotgun sequence	149335..149772	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWQS010000033.1 Salmonella enterica strain PNUSAS391627 SAMN37844524-rid19837453.guided.17, whole genome shotgun sequence	31262..31699	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWQS010000002.1	544532..545400	99.425	870	0						
GCA_032733105.1_PDT001940832.1_genomic.fna	Salmonella_enterica	0.5208	97.463 KB	18	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWQV010000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314577 SAMN37844074-rid19840043.denovo.009, whole genome shotgun sequence	84237..84674	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWQV010000117.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314577 SAMN37844074-rid19840043.guided.049, whole genome shotgun sequence	14482..14919	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNWQV010000063.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314577 SAMN37844074-rid19840043.denovo.066, whole genome shotgun sequence	4655..4914	enterobacteriales	IncX1	100	373 / 373	ABNWQV010000075.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314577 SAMN37844074-rid19840043.denovo.078, whole genome shotgun sequence	1271..1643																																																avrA	ABNWQV010000040.1	39498..40367	99.655	870	0						
GCA_032733125.1_PDT001940822.1_genomic.fna	Salmonella_enterica	0.522	96.39 KB	16	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWQW010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314557 SAMN37844050-rid19837263.denovo.004, whole genome shotgun sequence	42764..43201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWQW010000101.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314557 SAMN37844050-rid19837263.guided.052, whole genome shotgun sequence	20663..21100	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWQW010000072.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314557 SAMN37844050-rid19837263.denovo.075, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNWQW010000073.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314557 SAMN37844050-rid19837263.denovo.076, whole genome shotgun sequence	1155..1416																																																avrA	ABNWQW010000005.1	81622..82491	99.54	870	0						
GCA_032733165.1_PDT001940791.1_genomic.fna	Salmonella_enterica	0.5211	400.834 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWQZ010000001.1 Salmonella enterica strain PNUSAS391621 SAMN37844012-rid19840643.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWQZ010000028.1 Salmonella enterica strain PNUSAS391621 SAMN37844012-rid19840643.guided.15, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWQZ010000018.1 Salmonella enterica strain PNUSAS391621 SAMN37844012-rid19840643.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNWQZ010000019.1 Salmonella enterica strain PNUSAS391621 SAMN37844012-rid19840643.denovo.22, whole genome shotgun sequence	3403..3664																																																avrA	ABNWQZ010000002.1	553356..554225	99.54	870	0						
GCA_032733205.1_PDT001940789.1_genomic.fna	Salmonella_enterica	0.5221	490.392 KB	3	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWQY010000001.1 Salmonella enterica strain FDA1234226-S010-020 SAMN37844009-rid19839913.denovo.01, whole genome shotgun sequence	1047807..1048244	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWQY010000020.1 Salmonella enterica strain FDA1234226-S010-020 SAMN37844009-rid19839913.guided.12, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032733245.1_PDT001940286.1_genomic.fna	Salmonella_enterica	0.5214	80.507 KB	21	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFWP010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051096 SAMN37820137-rid19832653.denovo.004, whole genome shotgun sequence	52488..52925	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFWP010000119.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051096 SAMN37820137-rid19832653.guided.011, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFWP010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051096 SAMN37820137-rid19832653.denovo.012, whole genome shotgun sequence	48419..49061	enterobacteriales	IncFII(S)	100	262 / 262	DAQFWP010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051096 SAMN37820137-rid19832653.denovo.012, whole genome shotgun sequence	64146..64407		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFWP010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051096 SAMN37820137-rid19832653.denovo.015, whole genome shotgun sequence	15829..15965																																									avrA	DAQFWP010000024.1	39625..40494	99.885	870	0						
GCA_032733285.1_PDT001940223.1_genomic.fna	Salmonella_enterica	0.5214	88.47 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFWO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045214 SAMN37819818-rid19827983.denovo.001, whole genome shotgun sequence	55685..56122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFWO010000107.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045214 SAMN37819818-rid19827983.guided.033, whole genome shotgun sequence	34213..34650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFWO010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045214 SAMN37819818-rid19827983.denovo.013, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	DAQFWO010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045214 SAMN37819818-rid19827983.denovo.013, whole genome shotgun sequence	64139..64400		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQFWO010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045214 SAMN37819818-rid19827983.denovo.043, whole genome shotgun sequence	22488..22624																																									avrA	DAQFWO010000021.1	39625..40494	99.885	870	0						
GCA_032733305.1_PDT001940215.1_genomic.fna	Salmonella_enterica	0.5225	96.006 KB	17	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQFWQ010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00045371 SAMN37819827-rid19832633.denovo.04, whole genome shotgun sequence	12494..12931	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQFWQ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00045371 SAMN37819827-rid19832633.guided.56, whole genome shotgun sequence	8853..9290	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQFWQ010000015.1	60547..61416	99.77	870	0						
GCA_032733325.1_PDT001940732.1_genomic.fna	Salmonella_enterica	0.5215	478.496 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWRB010000001.1 Salmonella enterica strain PNUSAS391509 SAMN37831714-rid19837013.denovo.01, whole genome shotgun sequence	56448..56885	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWRB010000029.1 Salmonella enterica strain PNUSAS391509 SAMN37831714-rid19837013.guided.21, whole genome shotgun sequence	1471..1908	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWRB010000016.1 Salmonella enterica strain PNUSAS391509 SAMN37831714-rid19837013.denovo.16, whole genome shotgun sequence	48564..49206	enterobacteriales	IncFII(S)	100	262 / 262	ABNWRB010000016.1 Salmonella enterica strain PNUSAS391509 SAMN37831714-rid19837013.denovo.16, whole genome shotgun sequence	4311..4572																																																avrA	ABNWRB010000003.1	553077..553946	99.54	870	0						
GCA_032733345.1_PDT001940144.1_genomic.fna	Salmonella_enterica	0.5224	59.091 KB	26	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFWR010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048462 SAMN37820064-rid19832623.denovo.022, whole genome shotgun sequence	12558..12995	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFWR010000164.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048462 SAMN37820064-rid19832623.guided.117, whole genome shotgun sequence	3725..4162	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFWR010000124.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048462 SAMN37820064-rid19832623.denovo.127, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	DAQFWR010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048462 SAMN37820064-rid19832623.denovo.010, whole genome shotgun sequence	43102..43744		enterobacteriales	IncFII(S)	100	262 / 262	DAQFWR010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048462 SAMN37820064-rid19832623.denovo.010, whole genome shotgun sequence	58829..59090																																									avrA	DAQFWR010000036.1	43810..44679	99.885	870	0						
GCA_032733365.1_PDT001939966.1_genomic.fna	Salmonella_enterica	0.523	44.214 KB	38	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFWU010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048735 SAMN37820082-rid19833913.denovo.017, whole genome shotgun sequence	11361..11798	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFWU010000207.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048735 SAMN37820082-rid19833913.guided.091, whole genome shotgun sequence	9439..9876	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFWU010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048735 SAMN37820082-rid19833913.denovo.049, whole genome shotgun sequence	24672..25314	enterobacteriales	IncFII(S)	100	262 / 262	DAQFWU010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048735 SAMN37820082-rid19833913.denovo.049, whole genome shotgun sequence	9326..9587																																																avrA	DAQFWU010000016.1	61077..61946	99.885	870	0						
GCA_032733385.1_PDT001940063.1_genomic.fna	Salmonella_enterica	0.5201	222.131 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col(pHAD28),IncFIB(S),IncFII(S),IncX4	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFWT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036287 SAMN37819735-rid19832593.denovo.01, whole genome shotgun sequence	242009..242446	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFWT010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036287 SAMN37819735-rid19832593.guided.19, whole genome shotgun sequence	44277..44714	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQFWT010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036287 SAMN37819735-rid19832593.denovo.40, whole genome shotgun sequence	1480..1610	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFWT010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036287 SAMN37819735-rid19832593.denovo.25, whole genome shotgun sequence	48454..49096		enterobacteriales	IncFII(S)	100	262 / 262	DAQFWT010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036287 SAMN37819735-rid19832593.denovo.25, whole genome shotgun sequence	4201..4462		enterobacteriales	IncX4	100	374 / 374	DAQFWT010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00036287 SAMN37819735-rid19832593.denovo.31, whole genome shotgun sequence	13724..14097																																		avrA	DAQFWT010000003.1	140958..141827	99.54	870	0						
GCA_032733405.1_PDT001939994.1_genomic.fna	Salmonella_enterica	0.5188	79.891 KB	25	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(B),tet(B)	0		4	IncFIB(S),IncFII(S),IncHI2,IncHI2A	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aph(6)-Id	100	837/837	DAQFWV010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.denovo.007, whole genome shotgun sequence	38290..39126	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAQFWV010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.denovo.007, whole genome shotgun sequence	37488..38290	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAQFWV010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.denovo.007, whole genome shotgun sequence	37487..38290	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAQFWV010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.denovo.007, whole genome shotgun sequence	37487..38290	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAQFWV010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.denovo.007, whole genome shotgun sequence	37487..38290	Streptomycin	AF321550	aac(6')-Iaa	100	438/438	DAQFWV010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.denovo.026, whole genome shotgun sequence	13419..13856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFWV010000134.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.guided.040, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQFWV010000135.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.guided.044, whole genome shotgun sequence	3688..4524	Streptomycin	M28829	aph(3'')-Ib	100	803/804	DAQFWV010000135.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.guided.044, whole genome shotgun sequence	2886..3688	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAQFWV010000135.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.guided.044, whole genome shotgun sequence	2885..3688	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAQFWV010000135.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.guided.044, whole genome shotgun sequence	2885..3688	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAQFWV010000135.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.guided.044, whole genome shotgun sequence	2885..3688	Streptomycin	AF321550	tet(B)	100	1206/1206	DAQFWV010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.denovo.102, whole genome shotgun sequence	398..1603	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQFWV010000138.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.guided.108, whole genome shotgun sequence	1675..2880	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncFIB(S)	100	643 / 643	DAQFWV010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.denovo.016, whole genome shotgun sequence	68515..69157	enterobacteriales	IncFII(S)	100	262 / 262	DAQFWV010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.denovo.016, whole genome shotgun sequence	84242..84503		enterobacteriales	IncHI2	100	327 / 327	DAQFWV010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.denovo.038, whole genome shotgun sequence	27984..28310		enterobacteriales	IncHI2A	99.52	630 / 630	DAQFWV010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046611 SAMN37819970-rid19829283.denovo.038, whole genome shotgun sequence	45307..45936																																		avrA	DAQFWV010000009.1	105328..106197	99.885	870	0						
GCA_032733425.1_PDT001940122.1_genomic.fna	Salmonella_enterica	0.5208	197.867 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFWS010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025344 SAMN37819597-rid19832603.denovo.02, whole genome shotgun sequence	162455..162892	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFWS010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025344 SAMN37819597-rid19832603.guided.28, whole genome shotgun sequence	7504..7941	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFWS010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025344 SAMN37819597-rid19832603.denovo.36, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFWS010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025344 SAMN37819597-rid19832603.denovo.26, whole genome shotgun sequence	40531..41173		enterobacteriales	IncFII(S)	100	262 / 262	DAQFWS010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025344 SAMN37819597-rid19832603.denovo.26, whole genome shotgun sequence	55556..55817																																									avrA	DAQFWS010000007.1	28843..29712	99.54	870	0						
GCA_032733445.1_PDT001939919.1_genomic.fna	Salmonella_enterica	0.5212	133.638 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQFWW010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028422 SAMN37819663-rid19832583.denovo.05, whole genome shotgun sequence	50934..51371	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQFWW010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028422 SAMN37819663-rid19832583.guided.46, whole genome shotgun sequence	17747..18184	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQFWW010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028422 SAMN37819663-rid19832583.denovo.58, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQFWW010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028422 SAMN37819663-rid19832583.denovo.34, whole genome shotgun sequence	40533..41175		enterobacteriales	IncFII(S)	100	262 / 262	DAQFWW010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00028422 SAMN37819663-rid19832583.denovo.34, whole genome shotgun sequence	55558..55819																																									avrA	DAQFWW010000004.1	115422..116291	99.54	870	0						
GCA_032733465.1_PDT001939820.1_genomic.fna	Salmonella_enterica	0.522	96.41 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQFWX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047043 SAMN37820011-rid19830303.denovo.01, whole genome shotgun sequence	206863..207300	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQFWX010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047043 SAMN37820011-rid19830303.guided.28, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQFWX010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047043 SAMN37820011-rid19830303.denovo.14, whole genome shotgun sequence	44663..45305	enterobacteriales	IncFII(S)	100	262 / 262	DAQFWX010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047043 SAMN37820011-rid19830303.denovo.14, whole genome shotgun sequence	60390..60651																																																avrA	DAQFWX010000004.1	105356..106225	99.885	870	0						
GCA_032733485.1_PDT001788040.1_genomic.fna	Salmonella_enterica	0.5232	57.386 KB	28	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWRC010000018.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313318 SAMN35881379-rid18543753.denovo.018, whole genome shotgun sequence	12489..12926	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWRC010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313318 SAMN35881379-rid18543753.denovo.077, whole genome shotgun sequence	18463..19254	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWRC010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313318 SAMN35881379-rid18543753.denovo.077, whole genome shotgun sequence	18463..19254	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNWRC010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313318 SAMN35881379-rid18543753.guided.075, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWRC010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313318 SAMN35881379-rid18543753.guided.075, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNWRC010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313318 SAMN35881379-rid18543753.guided.115, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNWRC010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313318 SAMN35881379-rid18543753.denovo.077, whole genome shotgun sequence	17119..17958	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWRC010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313318 SAMN35881379-rid18543753.guided.075, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNWRC010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313318 SAMN35881379-rid18543753.denovo.077, whole genome shotgun sequence	3403..4602	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWRC010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313318 SAMN35881379-rid18543753.guided.075, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNWRC010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313318 SAMN35881379-rid18543753.denovo.122, whole genome shotgun sequence	5623..6182																																																						avrA	ABNWRC010000002.1	105533..106402	99.655	870	0						
GCA_032733505.1_PDT001788038.1_genomic.fna	Salmonella_enterica	0.522	72.592 KB	22	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	ColRNAI,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWRE010000025.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313316 SAMN35881364-rid18543733.denovo.025, whole genome shotgun sequence	55417..55854	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWRE010000145.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313316 SAMN35881364-rid18543733.guided.058, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	91.07	112 / 130	ABNWRE010000107.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313316 SAMN35881364-rid18543733.denovo.110, whole genome shotgun sequence	2006..2117	enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNWRE010000093.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313316 SAMN35881364-rid18543733.denovo.096, whole genome shotgun sequence	2281..2962		enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABNWRE010000094.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313316 SAMN35881364-rid18543733.denovo.097, whole genome shotgun sequence	1425..1921																																									avrA	ABNWRE010000016.1	79370..80239	98.966	870	0						
GCA_032733525.1_PDT001788036.1_genomic.fna	Salmonella_enterica	0.5216	85.473 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		4	ColRNAI,ColRNAI,ColpVC,IncC,IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWRF010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313268 SAMN35881360-rid18543383.denovo.001, whole genome shotgun sequence	274663..275100	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWRF010000109.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313268 SAMN35881360-rid18543383.guided.066, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNWRF010000024.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313268 SAMN35881360-rid18543383.denovo.024, whole genome shotgun sequence	26550..27365	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNWRF010000107.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313268 SAMN35881360-rid18543383.guided.047, whole genome shotgun sequence	26591..27406	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNWRF010000024.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313268 SAMN35881360-rid18543383.denovo.024, whole genome shotgun sequence	29542..30741	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWRF010000107.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313268 SAMN35881360-rid18543383.guided.047, whole genome shotgun sequence	29583..30782	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	ColRNAI	90.83	109 / 130	ABNWRF010000079.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313268 SAMN35881360-rid18543383.denovo.083, whole genome shotgun sequence	1011..1119	enterobacteriales	ColRNAI	90.08	131 / 130	ABNWRF010000084.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313268 SAMN35881360-rid18543383.denovo.088, whole genome shotgun sequence	810..940		enterobacteriales	ColpVC	98.96	193 / 193	ABNWRF010000094.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313268 SAMN35881360-rid18543383.denovo.098, whole genome shotgun sequence	805..997		enterobacteriales	IncC	100	417 / 417	ABNWRF010000024.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313268 SAMN35881360-rid18543383.denovo.024, whole genome shotgun sequence	72331..72747		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNWRF010000063.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313268 SAMN35881360-rid18543383.denovo.065, whole genome shotgun sequence	4755..4896																											avrA	ABNWRF010000015.1	84015..84884	99.885	870	0						
GCA_032733545.1_PDT001788037.1_genomic.fna	Salmonella_enterica	0.5213	192.271 KB	8	aroC_99,dnaN_175,hemD_58,hisD_11,purE_111,sucA_9,thrA_2	639	3,10:y:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),IncN	aroC	100	100	aroC_99	dnaN	100	100	dnaN_175	hemD	100	100	hemD_58	hisD	100	100	hisD_11	purE	100	100	purE_111	sucA	100	100	sucA_9	thrA	100	100	thrA_2	3,10	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Orion		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNWRD010000001.1 Salmonella enterica subsp. enterica serovar Orion strain FSIS22313313 SAMN35881366-rid18543393.denovo.01, whole genome shotgun sequence	360677..361114	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNWRD010000052.1 Salmonella enterica subsp. enterica serovar Orion strain FSIS22313313 SAMN35881366-rid18543393.guided.31, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNWRD010000032.1 Salmonella enterica subsp. enterica serovar Orion strain FSIS22313313 SAMN35881366-rid18543393.denovo.33, whole genome shotgun sequence	3220..4419	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWRD010000055.1 Salmonella enterica subsp. enterica serovar Orion strain FSIS22313313 SAMN35881366-rid18543393.guided.48, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.04	115 / 131	ABNWRD010000043.1 Salmonella enterica subsp. enterica serovar Orion strain FSIS22313313 SAMN35881366-rid18543393.denovo.46, whole genome shotgun sequence	1100..1214	enterobacteriales	IncN	100	514 / 514	ABNWRD010000042.1 Salmonella enterica subsp. enterica serovar Orion strain FSIS22313313 SAMN35881366-rid18543393.denovo.45, whole genome shotgun sequence	584..1097																																																											
GCA_032733565.1_PDT001788035.1_genomic.fna	Salmonella_enterica	0.5222	86.449 KB	19	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWRH010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.denovo.003, whole genome shotgun sequence	134017..134454	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWRH010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.denovo.064, whole genome shotgun sequence	18454..19245	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWRH010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.denovo.064, whole genome shotgun sequence	18454..19245	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNWRH010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.denovo.106, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNWRH010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.denovo.106, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNWRH010000142.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.guided.088, whole genome shotgun sequence	7341..7778	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNWRH010000144.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.guided.107, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNWRH010000144.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.guided.107, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNWRH010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.guided.125, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWRH010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.guided.125, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	floR	98.19	1214/1215	ABNWRH010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.denovo.104, whole genome shotgun sequence	2797..4010	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNWRH010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.guided.109, whole genome shotgun sequence	485..1698	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNWRH010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.denovo.064, whole genome shotgun sequence	17110..17949	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWRH010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.guided.072, whole genome shotgun sequence	360..1199	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNWRH010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.denovo.064, whole genome shotgun sequence	3394..4593	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWRH010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.guided.072, whole genome shotgun sequence	13716..14915	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNWRH010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.denovo.098, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNWRH010000143.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.guided.105, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNWRH010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313270 SAMN35881362-rid18543723.denovo.101, whole genome shotgun sequence	2217..2776																																																						avrA	ABNWRH010000023.1	39673..40542	99.655	870	0						
GCA_032733585.1_PDT001788034.1_genomic.fna	Salmonella_enterica	0.5209	76.465 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWRI010000027.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313269 SAMN35881361-rid18543713.denovo.027, whole genome shotgun sequence	15484..15921	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWRI010000140.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313269 SAMN35881361-rid18543713.guided.055, whole genome shotgun sequence	14726..15163	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNWRI010000106.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313269 SAMN35881361-rid18543713.denovo.109, whole genome shotgun sequence	281..422	enterobacteriales	IncX1	100	373 / 373	ABNWRI010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313269 SAMN35881361-rid18543713.denovo.099, whole genome shotgun sequence	2153..2525																																																avrA	ABNWRI010000042.1	39484..40353	99.655	870	0						
GCA_032733625.1_PDT001788031.1_genomic.fna	Salmonella_enterica	0.5222	53.727 KB	27	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	4	Col(pHAD28),Col156,Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNWRK010000018.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313312 SAMN35881363-rid18543373.denovo.018, whole genome shotgun sequence	12394..12831	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNWRK010000189.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313312 SAMN35881363-rid18543373.guided.064, whole genome shotgun sequence	15459..15896	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNWRK010000131.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313312 SAMN35881363-rid18543373.denovo.135, whole genome shotgun sequence	2502..3707	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNWRK010000191.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313312 SAMN35881363-rid18543373.guided.133, whole genome shotgun sequence	2533..3738	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNWRK010000128.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313312 SAMN35881363-rid18543373.denovo.131, whole genome shotgun sequence	557..687	enterobacteriales	Col156	94.81	154 / 154	ABNWRK010000132.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313312 SAMN35881363-rid18543373.denovo.136, whole genome shotgun sequence	792..945		enterobacteriales	Col440I	94.59	111 / 114	ABNWRK010000123.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313312 SAMN35881363-rid18543373.denovo.126, whole genome shotgun sequence	3175..3285		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNWRK010000111.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313312 SAMN35881363-rid18543373.denovo.114, whole genome shotgun sequence	4744..4885																																		avrA	ABNWRK010000060.1	25031..25900	99.54	870	0						
GCA_032733685.1_PDT001788032.1_genomic.fna	Salmonella_enterica	0.5233	80.841 KB	21	aroC_118,dnaN_107,hemD_8,hisD_51,purE_2,sucA_117,thrA_16	319	-:z29:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_118	dnaN	100	100	dnaN_107	hemD	100	100	hemD_8	hisD	100	100	hisD_51	purE	100	100	purE_2	sucA	100	100	sucA_117	thrA	100	100	thrA_16	-	z29	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z29:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWRJ010000003.1 Salmonella enterica subsp. enterica serovar Tennessee strain FSIS22313267 SAMN35881352-rid18543693.denovo.003, whole genome shotgun sequence	13083..13520	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWRJ010000110.1 Salmonella enterica subsp. enterica serovar Tennessee strain FSIS22313267 SAMN35881352-rid18543693.guided.077, whole genome shotgun sequence	11873..12310	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWRJ010000004.1	146061..146930	99.655	870	0						
GCA_032733725.1_PDT001788028.1_genomic.fna	Salmonella_enterica	0.5232	88.354 KB	19	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWRN010000055.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS22313266 SAMN35881353-rid18543663.denovo.055, whole genome shotgun sequence	11359..11796	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWRN010000109.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS22313266 SAMN35881353-rid18543663.guided.081, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNWRN010000086.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS22313266 SAMN35881353-rid18543663.denovo.089, whole genome shotgun sequence	2208..2338																																																																	
GCA_032734585.1_PDT001787954.1_genomic.fna	Salmonella_enterica	0.5214	223.424 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	ColpVC,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWST010000002.1 Salmonella enterica strain PNUSAS358162 SAMN35880121-rid18541383.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWST010000054.1 Salmonella enterica strain PNUSAS358162 SAMN35880121-rid18541383.guided.32, whole genome shotgun sequence	20617..21054	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	96.89	193 / 193	ABNWST010000042.1 Salmonella enterica strain PNUSAS358162 SAMN35880121-rid18541383.denovo.45, whole genome shotgun sequence	195..387	enterobacteriales	IncFIB(S)	100	643 / 643	ABNWST010000024.1 Salmonella enterica strain PNUSAS358162 SAMN35880121-rid18541383.denovo.24, whole genome shotgun sequence	44734..45376		enterobacteriales	IncFII(S)	100	262 / 262	ABNWST010000024.1 Salmonella enterica strain PNUSAS358162 SAMN35880121-rid18541383.denovo.24, whole genome shotgun sequence	29388..29649		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNWST010000020.1 Salmonella enterica strain PNUSAS358162 SAMN35880121-rid18541383.denovo.20, whole genome shotgun sequence	60512..60653																																		avrA	ABNWST010000001.1	401134..402002	100	869	0						
GCA_032734605.1_PDT001787953.1_genomic.fna	Salmonella_enterica	0.5204	379.577 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNWSU010000001.1 Salmonella enterica strain PNUSAS358161 SAMN35880119-rid18543173.denovo.01, whole genome shotgun sequence	336999..337436	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNWSU010000025.1 Salmonella enterica strain PNUSAS358161 SAMN35880119-rid18543173.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNWSU010000016.1 Salmonella enterica strain PNUSAS358161 SAMN35880119-rid18543173.denovo.16, whole genome shotgun sequence	6347..6880																																																						avrA	ABNWSU010000006.1	181397..182266	99.77	870	0						
GCA_032734625.1_PDT001787952.1_genomic.fna	Salmonella_enterica	0.5221	392.159 KB	5	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_19,thrA_12	582	8:z4,z23:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	z4,z23	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Chailey		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWSV010000005.1 Salmonella enterica strain PNUSAS358166 SAMN35880123-rid18542713.denovo.05, whole genome shotgun sequence	246298..246735	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWSV010000028.1 Salmonella enterica strain PNUSAS358166 SAMN35880123-rid18542713.guided.20, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWSV010000001.1	573576..574444	99.425	870	0						
GCA_032734645.1_PDT001787951.1_genomic.fna	Salmonella_enterica	0.5161	278.704 KB	7	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNWSW010000009.1 Salmonella enterica strain PNUSAS358160 SAMN35880118-rid18542703.denovo.09, whole genome shotgun sequence	7116..7553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNWSW010000061.1 Salmonella enterica strain PNUSAS358160 SAMN35880118-rid18542703.guided.43, whole genome shotgun sequence	4407..4844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNWSW010000010.1 Salmonella enterica strain PNUSAS358160 SAMN35880118-rid18542703.denovo.10, whole genome shotgun sequence	168082..168724	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNWSW010000030.1 Salmonella enterica strain PNUSAS358160 SAMN35880118-rid18542703.denovo.32, whole genome shotgun sequence	22924..23506																																																											
GCA_032734665.1_PDT001787949.1_genomic.fna	Salmonella_enterica	0.5208	225.552 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWSY010000002.1 Salmonella enterica strain PNUSAS358163 SAMN35880114-rid18542683.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWSY010000061.1 Salmonella enterica strain PNUSAS358163 SAMN35880114-rid18542683.guided.33, whole genome shotgun sequence	3762..4199	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWSY010000001.1	401464..402332	100	869	0						
GCA_032734685.1_PDT001787950.1_genomic.fna	Salmonella_enterica	0.5205	196.949 KB	8	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWSX010000001.1 Salmonella enterica strain PNUSAS358159 SAMN35880116-rid18542693.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWSX010000044.1 Salmonella enterica strain PNUSAS358159 SAMN35880116-rid18542693.guided.31, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNWSX010000021.1 Salmonella enterica strain PNUSAS358159 SAMN35880116-rid18542693.denovo.21, whole genome shotgun sequence	6742..7275																																																						avrA	ABNWSX010000009.1	134926..135795	99.425	870	0						
GCA_032734705.1_PDT001787946.1_genomic.fna	Salmonella_enterica	0.5215	263.453 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWTC010000001.1 Salmonella enterica strain PNUSAS358164 SAMN35880112-rid18541373.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWTC010000044.1 Salmonella enterica strain PNUSAS358164 SAMN35880112-rid18541373.guided.30, whole genome shotgun sequence	8046..8483	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNWTC010000017.1 Salmonella enterica strain PNUSAS358164 SAMN35880112-rid18541373.denovo.17, whole genome shotgun sequence	65921..67126	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNWTC010000042.1 Salmonella enterica strain PNUSAS358164 SAMN35880112-rid18541373.guided.27, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNWTC010000017.1 Salmonella enterica strain PNUSAS358164 SAMN35880112-rid18541373.denovo.17, whole genome shotgun sequence	73512..73653	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNWTC010000042.1 Salmonella enterica strain PNUSAS358164 SAMN35880112-rid18541373.guided.27, whole genome shotgun sequence	3169..3310																																																avrA	ABNWTC010000002.1	149829..150698	99.655	870	0						
GCA_032734725.1_PDT001787947.1_genomic.fna	Salmonella_enterica	0.5211	489.68 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWTB010000001.1 Salmonella enterica strain PNUSAS358167 SAMN35880122-rid18542663.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWTB010000024.1 Salmonella enterica strain PNUSAS358167 SAMN35880122-rid18542663.guided.14, whole genome shotgun sequence	23883..24320	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWTB010000017.1 Salmonella enterica strain PNUSAS358167 SAMN35880122-rid18542663.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNWTB010000018.1 Salmonella enterica strain PNUSAS358167 SAMN35880122-rid18542663.denovo.21, whole genome shotgun sequence	3392..3653																																																avrA	ABNWTB010000002.1	552676..553545	99.54	870	0						
GCA_032734785.1_PDT001787948.1_genomic.fna	Salmonella_enterica	0.5218	257.842 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWSZ010000002.1 Salmonella enterica strain PNUSAS358165 SAMN35880109-rid18542673.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWSZ010000047.1 Salmonella enterica strain PNUSAS358165 SAMN35880109-rid18542673.guided.24, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNWSZ010000022.1 Salmonella enterica strain PNUSAS358165 SAMN35880109-rid18542673.denovo.22, whole genome shotgun sequence	48414..49056	enterobacteriales	IncFII(S)	100	262 / 262	ABNWSZ010000028.1 Salmonella enterica strain PNUSAS358165 SAMN35880109-rid18542673.denovo.31, whole genome shotgun sequence	29389..29650																																																avrA	ABNWSZ010000001.1	478828..479696	100	869	0						
GCA_032736325.1_PDT001940939.1_genomic.fna	Salmonella_enterica	0.5215	223.139 KB	8	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNWTU010000001.1 Salmonella enterica strain PNUSAS391594 SAMN37844989-rid19837593.denovo.01, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNWTU010000044.1 Salmonella enterica strain PNUSAS391594 SAMN37844989-rid19837593.guided.33, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWTU010000006.1	98990..99859	99.77	870	0						
GCA_032736365.1_PDT001940937.1_genomic.fna	Salmonella_enterica	0.5209	296.234 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNWTW010000001.1 Salmonella enterica strain PNUSAS391571 SAMN37844990-rid19840323.denovo.01, whole genome shotgun sequence	167933..168370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNWTW010000035.1 Salmonella enterica strain PNUSAS391571 SAMN37844990-rid19840323.guided.25, whole genome shotgun sequence	9693..10130	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWTW010000002.1	144854..145723	99.31	870	0						
GCA_032736385.1_PDT001940936.1_genomic.fna	Salmonella_enterica	0.5199	228.076 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWTX010000002.1 Salmonella enterica strain PNUSAS391577 SAMN37844986-rid19837583.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWTX010000047.1 Salmonella enterica strain PNUSAS391577 SAMN37844986-rid19837583.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNWTX010000022.1 Salmonella enterica strain PNUSAS391577 SAMN37844986-rid19837583.denovo.24, whole genome shotgun sequence	44738..45380	enterobacteriales	IncFII(S)	100	262 / 262	ABNWTX010000022.1 Salmonella enterica strain PNUSAS391577 SAMN37844986-rid19837583.denovo.24, whole genome shotgun sequence	29392..29653		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNWTX010000018.1 Salmonella enterica strain PNUSAS391577 SAMN37844986-rid19837583.denovo.18, whole genome shotgun sequence	32299..32440		enterobacteriales	IncI2(Delta)	98.13	321 / 316	ABNWTX010000028.1 Salmonella enterica strain PNUSAS391577 SAMN37844986-rid19837583.denovo.30, whole genome shotgun sequence	29911..30231																																		avrA	ABNWTX010000003.1	209222..210090	100	869	0						
GCA_032736405.1_PDT001940932.1_genomic.fna	Salmonella_enterica	0.5214	296.235 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNWTY010000001.1 Salmonella enterica strain PNUSAS391580 SAMN37844988-rid19838993.denovo.01, whole genome shotgun sequence	167933..168370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNWTY010000037.1 Salmonella enterica strain PNUSAS391580 SAMN37844988-rid19838993.guided.25, whole genome shotgun sequence	8329..8766	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWTY010000002.1	144854..145723	99.31	870	0						
GCA_032736425.1_PDT001940927.1_genomic.fna	Salmonella_enterica	0.522	204.298 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	3	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,blaIMP-27,blaIMP-27	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWUA010000001.1 Salmonella enterica strain PNUSAS391579 SAMN37844979-rid19840303.denovo.01, whole genome shotgun sequence	469634..470071	Amikacin, Tobramycin	NC_003197	aadA1	100	789/789	ABNWUA010000016.1 Salmonella enterica strain PNUSAS391579 SAMN37844979-rid19840303.denovo.16, whole genome shotgun sequence	48439..49227	Spectinomycin, Streptomycin	JQ480156	aadA1	100	789/789	ABNWUA010000038.1 Salmonella enterica strain PNUSAS391579 SAMN37844979-rid19840303.guided.24, whole genome shotgun sequence	10412..11200	Spectinomycin, Streptomycin	JQ480156	aac(6')-Iaa	97.49	438/438	ABNWUA010000040.1 Salmonella enterica strain PNUSAS391579 SAMN37844979-rid19840303.guided.30, whole genome shotgun sequence	8009..8446	Amikacin, Tobramycin	NC_003197	blaIMP-27	100	741/741	ABNWUA010000016.1 Salmonella enterica strain PNUSAS391579 SAMN37844979-rid19840303.denovo.16, whole genome shotgun sequence	47048..47788	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam	JF894248	blaIMP-27	100	741/741	ABNWUA010000038.1 Salmonella enterica strain PNUSAS391579 SAMN37844979-rid19840303.guided.24, whole genome shotgun sequence	9021..9761	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam	JF894248																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWUA010000002.1	129925..130794	99.655	870	0						
GCA_032736445.1_PDT001940938.1_genomic.fna	Salmonella_enterica	0.5215	277.781 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWTV010000001.1 Salmonella enterica strain PNUSAS391591 SAMN37844987-rid19840333.denovo.01, whole genome shotgun sequence	482691..483128	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWTV010000038.1 Salmonella enterica strain PNUSAS391591 SAMN37844987-rid19840333.denovo.43, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNWTV010000038.1 Salmonella enterica strain PNUSAS391591 SAMN37844987-rid19840333.denovo.43, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNWTV010000060.1 Salmonella enterica strain PNUSAS391591 SAMN37844987-rid19840333.guided.37, whole genome shotgun sequence	3329..3766	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWTV010000061.1 Salmonella enterica strain PNUSAS391591 SAMN37844987-rid19840333.guided.42, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNWTV010000061.1 Salmonella enterica strain PNUSAS391591 SAMN37844987-rid19840333.guided.42, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNWTV010000046.1 Salmonella enterica strain PNUSAS391591 SAMN37844987-rid19840333.denovo.52, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNWTV010000062.1 Salmonella enterica strain PNUSAS391591 SAMN37844987-rid19840333.guided.51, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNWTV010000038.1 Salmonella enterica strain PNUSAS391591 SAMN37844987-rid19840333.denovo.43, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNWTV010000061.1 Salmonella enterica strain PNUSAS391591 SAMN37844987-rid19840333.guided.42, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNWTV010000033.1 Salmonella enterica strain PNUSAS391591 SAMN37844987-rid19840333.denovo.36, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNWTV010000059.1 Salmonella enterica strain PNUSAS391591 SAMN37844987-rid19840333.guided.35, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNWTV010000002.1	402758..403627	99.885	870	0						
GCA_032736465.1_PDT001940916.1_genomic.fna	Salmonella_enterica	0.5217	257.333 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWUC010000001.1 Salmonella enterica strain PNUSAS391578 SAMN37844959-rid19840273.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWUC010000037.1 Salmonella enterica strain PNUSAS391578 SAMN37844959-rid19840273.guided.30, whole genome shotgun sequence	31..468	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWUC010000004.1	97953..98821	99.77	870	0						
GCA_032736485.1_PDT001940925.1_genomic.fna	Salmonella_enterica	0.5218	215.99 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWUB010000002.1 Salmonella enterica strain PNUSAS391589 SAMN37844980-rid19838973.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWUB010000050.1 Salmonella enterica strain PNUSAS391589 SAMN37844980-rid19838973.guided.24, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNWUB010000017.1 Salmonella enterica strain PNUSAS391589 SAMN37844980-rid19838973.denovo.17, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNWUB010000017.1 Salmonella enterica strain PNUSAS391589 SAMN37844980-rid19838973.denovo.17, whole genome shotgun sequence	22559..22820																																																avrA	ABNWUB010000001.1	401549..402417	100	869	0						
GCA_032736505.1_PDT001940928.1_genomic.fna	Salmonella_enterica	0.521	400.834 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWTZ010000001.1 Salmonella enterica strain PNUSAS391590 SAMN37844981-rid19840313.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWTZ010000027.1 Salmonella enterica strain PNUSAS391590 SAMN37844981-rid19840313.guided.20, whole genome shotgun sequence	4060..4497	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWTZ010000019.1 Salmonella enterica strain PNUSAS391590 SAMN37844981-rid19840313.denovo.22, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNWTZ010000020.1 Salmonella enterica strain PNUSAS391590 SAMN37844981-rid19840313.denovo.23, whole genome shotgun sequence	3392..3653																																																avrA	ABNWTZ010000002.1	505310..506179	99.54	870	0						
GCA_032736525.1_PDT001940913.1_genomic.fna	Salmonella_enterica	0.5199	651.419 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWUD010000001.1 Salmonella enterica strain PNUSAS391653 SAMN37844955-rid19840763.denovo.01, whole genome shotgun sequence	1056317..1056754	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWUD010000028.1 Salmonella enterica strain PNUSAS391653 SAMN37844955-rid19840763.guided.21, whole genome shotgun sequence	1510..1947	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWUD010000002.1	556191..557059	99.425	870	0						
GCA_032736545.1_PDT001940911.1_genomic.fna	Salmonella_enterica	0.5204	230.036 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNWUE010000003.1 Salmonella enterica strain PNUSAS391643 SAMN37844957-rid19840753.denovo.03, whole genome shotgun sequence	313235..313672	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNWUE010000048.1 Salmonella enterica strain PNUSAS391643 SAMN37844957-rid19840753.guided.39, whole genome shotgun sequence	5186..5623	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNWUE010000026.1 Salmonella enterica strain PNUSAS391643 SAMN37844957-rid19840753.denovo.26, whole genome shotgun sequence	36325..36967																																																																	
GCA_032736565.1_PDT001940908.1_genomic.fna	Salmonella_enterica	0.5224	335.984 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWUF010000001.1 Salmonella enterica strain PNUSAS391652 SAMN37844945-rid19840263.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWUF010000033.1 Salmonella enterica strain PNUSAS391652 SAMN37844945-rid19840263.guided.25, whole genome shotgun sequence	979..1416	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWUF010000008.1	93999..94868	98.966	870	0						
GCA_032736585.1_PDT001940907.1_genomic.fna	Salmonella_enterica	0.5216	273.328 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWUG010000002.1 Salmonella enterica strain PNUSAS391647 SAMN37844948-rid19840253.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWUG010000045.1 Salmonella enterica strain PNUSAS391647 SAMN37844948-rid19840253.guided.29, whole genome shotgun sequence	12423..12860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNWUG010000017.1 Salmonella enterica strain PNUSAS391647 SAMN37844948-rid19840253.denovo.17, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNWUG010000017.1 Salmonella enterica strain PNUSAS391647 SAMN37844948-rid19840253.denovo.17, whole genome shotgun sequence	22546..22807																																																avrA	ABNWUG010000005.1	174651..175519	100	869	0						
GCA_032736605.1_PDT001940902.1_genomic.fna	Salmonella_enterica	0.5218	430.066 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWUH010000003.1 Salmonella enterica strain PNUSAS391651 SAMN37844950-rid19838903.denovo.03, whole genome shotgun sequence	201386..201823	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWUH010000035.1 Salmonella enterica strain PNUSAS391651 SAMN37844950-rid19838903.guided.20, whole genome shotgun sequence	4056..4493	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWUH010000010.1	140204..141072	99.195	870	0						
GCA_032736625.1_PDT001940904.1_genomic.fna	Salmonella_enterica	0.5206	596.658 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWUI010000001.1 Salmonella enterica strain PNUSAS391658 SAMN37844939-rid19837483.denovo.01, whole genome shotgun sequence	439382..439819	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWUI010000023.1 Salmonella enterica strain PNUSAS391658 SAMN37844939-rid19837483.guided.18, whole genome shotgun sequence	11587..12024	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWUI010000002.1	556457..557325	99.425	870	0						
GCA_032736645.1_PDT001940898.1_genomic.fna	Salmonella_enterica	0.5199	414.077 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWUJ010000002.1 Salmonella enterica strain PNUSAS391654 SAMN37844946-rid19840233.denovo.02, whole genome shotgun sequence	83056..83493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWUJ010000028.1 Salmonella enterica strain PNUSAS391654 SAMN37844946-rid19840233.guided.21, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.6	643 / 643	ABNWUJ010000010.1 Salmonella enterica strain PNUSAS391654 SAMN37844946-rid19840233.denovo.10, whole genome shotgun sequence	98549..99191																																																						avrA	ABNWUJ010000001.1	556185..557053	99.425	870	0						
GCA_032736665.1_PDT001940897.1_genomic.fna	Salmonella_enterica	0.5211	406.452 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWUK010000001.1 Salmonella enterica strain PNUSAS391660 SAMN37844951-rid19840223.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWUK010000033.1 Salmonella enterica strain PNUSAS391660 SAMN37844951-rid19840223.guided.25, whole genome shotgun sequence	9614..10051	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWUK010000023.1 Salmonella enterica strain PNUSAS391660 SAMN37844951-rid19840223.denovo.24, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNWUK010000024.1 Salmonella enterica strain PNUSAS391660 SAMN37844951-rid19840223.denovo.26, whole genome shotgun sequence	3435..3696																																																avrA	ABNWUK010000009.1	132301..133170	99.54	870	0						
GCA_032736685.1_PDT001940891.1_genomic.fna	Salmonella_enterica	0.5202	151.823 KB	11	aroC_392,dnaN_154,hemD_127,hisD_471,purE_486,sucA_369,thrA_402	2259	45:z35:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_392	dnaN	100	100	dnaN_154	hemD	100	100	hemD_127	hisD	100	100	hisD_471	purE	100	100	purE_486	sucA	100	100	sucA_369	thrA	100	100	thrA_402	45	z35	1,5	Salmonella enterica subspecies enterica (subspecies I)	Lattenkamp		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNWUL010000001.1 Salmonella enterica strain PNUSAS391410 SAMN37844525-rid19840713.denovo.01, whole genome shotgun sequence	296213..296650	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNWUL010000095.1 Salmonella enterica strain PNUSAS391410 SAMN37844525-rid19840713.guided.49, whole genome shotgun sequence	309..746	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.44	534 / 534	ABNWUL010000033.1 Salmonella enterica strain PNUSAS391410 SAMN37844525-rid19840713.denovo.33, whole genome shotgun sequence	15582..16115																																																																	
GCA_032736705.1_PDT001940874.1_genomic.fna	Salmonella_enterica	0.5207	337.7 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWUN010000001.1 Salmonella enterica strain PNUSAS391409 SAMN37844526-rid19837393.denovo.01, whole genome shotgun sequence	414315..414752	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWUN010000026.1 Salmonella enterica strain PNUSAS391409 SAMN37844526-rid19837393.guided.19, whole genome shotgun sequence	10980..11417	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032736765.1_PDT001940825.1_genomic.fna	Salmonella_enterica	0.5199	73.018 KB	23	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	3	IncHI2,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWUT010000005.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.denovo.005, whole genome shotgun sequence	85826..86263	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWUT010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.denovo.060, whole genome shotgun sequence	2754..3590	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWUT010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.denovo.060, whole genome shotgun sequence	1952..2754	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWUT010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.denovo.060, whole genome shotgun sequence	1951..2754	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWUT010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.denovo.060, whole genome shotgun sequence	1951..2754	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWUT010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.denovo.060, whole genome shotgun sequence	1951..2754	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNWUT010000207.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.guided.079, whole genome shotgun sequence	5684..6121	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWUT010000210.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.guided.100, whole genome shotgun sequence	2795..3631	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWUT010000210.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.guided.100, whole genome shotgun sequence	1993..2795	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWUT010000210.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.guided.100, whole genome shotgun sequence	1992..2795	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWUT010000210.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.guided.100, whole genome shotgun sequence	1992..2795	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWUT010000210.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.guided.100, whole genome shotgun sequence	1992..2795	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNWUT010000095.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.denovo.098, whole genome shotgun sequence	6841..8040	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWUT010000211.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.guided.125, whole genome shotgun sequence	2040..3239	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNWUT010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.denovo.055, whole genome shotgun sequence	12764..13090	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNWUT010000120.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.denovo.124, whole genome shotgun sequence	3846..3987		enterobacteriales	IncX1	100	373 / 373	ABNWUT010000146.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314558 SAMN37844051-rid19838633.denovo.151, whole genome shotgun sequence	2153..2525																																									avrA	ABNWUT010000034.1	39618..40487	99.655	870	0						
GCA_032736785.1_PDT001940863.1_genomic.fna	Salmonella_enterica	0.5221	319.136 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWUR010000001.1 Salmonella enterica strain PNUSAS391626 SAMN37844523-rid19837353.denovo.01, whole genome shotgun sequence	167005..167442	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWUR010000037.1 Salmonella enterica strain PNUSAS391626 SAMN37844523-rid19837353.guided.27, whole genome shotgun sequence	11402..11839	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWUR010000020.1 Salmonella enterica strain PNUSAS391626 SAMN37844523-rid19837353.denovo.20, whole genome shotgun sequence	48968..49610	enterobacteriales	IncFII(S)	100	262 / 262	ABNWUR010000020.1 Salmonella enterica strain PNUSAS391626 SAMN37844523-rid19837353.denovo.20, whole genome shotgun sequence	4715..4976																																																avrA	ABNWUR010000006.1	140589..141458	99.54	870	0						
GCA_032736865.1_PDT001940816.1_genomic.fna	Salmonella_enterica	0.5225	62.443 KB	24	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWUU010000023.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314552 SAMN37844036-rid19840653.denovo.023, whole genome shotgun sequence	12489..12926	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWUU010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314552 SAMN37844036-rid19840653.denovo.065, whole genome shotgun sequence	22843..23634	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWUU010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314552 SAMN37844036-rid19840653.denovo.065, whole genome shotgun sequence	22843..23634	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNWUU010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314552 SAMN37844036-rid19840653.guided.072, whole genome shotgun sequence	7108..7545	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNWUU010000165.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314552 SAMN37844036-rid19840653.guided.110, whole genome shotgun sequence	253..1044	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNWUU010000165.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314552 SAMN37844036-rid19840653.guided.110, whole genome shotgun sequence	253..1044	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNWUU010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314552 SAMN37844036-rid19840653.denovo.065, whole genome shotgun sequence	21499..22338	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWUU010000165.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314552 SAMN37844036-rid19840653.guided.110, whole genome shotgun sequence	1549..2388	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNWUU010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314552 SAMN37844036-rid19840653.denovo.065, whole genome shotgun sequence	7783..8982	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWUU010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314552 SAMN37844036-rid19840653.guided.089, whole genome shotgun sequence	6987..8186	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNWUU010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314552 SAMN37844036-rid19840653.denovo.086, whole genome shotgun sequence	14638..15197																																																						avrA	ABNWUU010000017.1	83964..84833	99.655	870	0						
GCA_032736885.1_PDT001940815.1_genomic.fna	Salmonella_enterica	0.5214	53.249 KB	27	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWUV010000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314554 SAMN37844038-rid19839993.denovo.008, whole genome shotgun sequence	82497..82934	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWUV010000207.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314554 SAMN37844038-rid19839993.guided.099, whole genome shotgun sequence	2242..2679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	ABNWUV010000137.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314554 SAMN37844038-rid19839993.denovo.140, whole genome shotgun sequence	1993..2674	enterobacteriales	IncFII	96.56	262 / 261	ABNWUV010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314554 SAMN37844038-rid19839993.denovo.043, whole genome shotgun sequence	3238..3499		enterobacteriales	IncX1	100	373 / 373	ABNWUV010000099.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314554 SAMN37844038-rid19839993.denovo.101, whole genome shotgun sequence	2153..2525																																									avrA	ABNWUV010000035.1	39620..40489	99.655	870	0						
GCA_032736925.1_PDT001940802.1_genomic.fna	Salmonella_enterica	0.5196	516.706 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWUY010000001.1 Salmonella enterica strain PNUSAS391618 SAMN37844010-rid19837173.denovo.01, whole genome shotgun sequence	677975..678412	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWUY010000033.1 Salmonella enterica strain PNUSAS391618 SAMN37844010-rid19837173.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWUY010000004.1	145117..145986	98.966	870	0						
GCA_032736945.1_PDT001940811.1_genomic.fna	Salmonella_enterica	0.5219	81.356 KB	20	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWUX010000009.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314551 SAMN37844035-rid19839983.denovo.009, whole genome shotgun sequence	110417..110854	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWUX010000120.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314551 SAMN37844035-rid19839983.guided.080, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNWUX010000098.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314551 SAMN37844035-rid19839983.denovo.101, whole genome shotgun sequence	1708..1838																																																						avrA	ABNWUX010000014.1	97867..98736	98.966	870	0						
GCA_032736965.1_PDT001940801.1_genomic.fna	Salmonella_enterica	0.5211	407.356 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWUZ010000001.1 Salmonella enterica strain PNUSAS391611 SAMN37844020-rid19839953.denovo.01, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWUZ010000035.1 Salmonella enterica strain PNUSAS391611 SAMN37844020-rid19839953.guided.25, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWUZ010000012.1	98949..99817	99.195	870	0						
GCA_032736985.1_PDT001941108.1_genomic.fna	Salmonella_enterica	0.5207	385.585 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWVB010000001.1 Salmonella enterica strain PNUSAS391827 SAMN37846085-rid19841733.denovo.01, whole genome shotgun sequence	477400..477837	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWVB010000049.1 Salmonella enterica strain PNUSAS391827 SAMN37846085-rid19841733.guided.25, whole genome shotgun sequence	9451..9888	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWVB010000016.1	39348..40218	99.196	871	0						
GCA_032737005.1_PDT001940800.1_genomic.fna	Salmonella_enterica	0.5191	411.992 KB	5	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWVA010000001.1 Salmonella enterica strain PNUSAS391619 SAMN37844008-rid19838573.denovo.01, whole genome shotgun sequence	490610..491047	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWVA010000031.1 Salmonella enterica strain PNUSAS391619 SAMN37844008-rid19838573.guided.20, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWVA010000005.1	39428..40297	98.966	870	0						
GCA_032737025.1_PDT001941104.1_genomic.fna	Salmonella_enterica	0.5231	332.887 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWVD010000001.1 Salmonella enterica strain PNUSAS391824 SAMN37846087-rid19841713.denovo.01, whole genome shotgun sequence	626763..627200	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWVD010000036.1 Salmonella enterica strain PNUSAS391824 SAMN37846087-rid19841713.guided.24, whole genome shotgun sequence	23959..24396	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWVD010000002.1	39466..40335	99.54	870	0						
GCA_032737055.1_PDT001941070.1_genomic.fna	Salmonella_enterica	0.522	524.752 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWVE010000001.1 Salmonella enterica strain PNUSAS391702 SAMN37845414-rid19841533.denovo.01, whole genome shotgun sequence	687395..687832	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNWVE010000027.1 Salmonella enterica strain PNUSAS391702 SAMN37845414-rid19841533.guided.15, whole genome shotgun sequence	3534..3971	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNWVE010000017.1 Salmonella enterica strain PNUSAS391702 SAMN37845414-rid19841533.denovo.20, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNWVE010000029.1 Salmonella enterica strain PNUSAS391702 SAMN37845414-rid19841533.guided.22, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNWVE010000017.1 Salmonella enterica strain PNUSAS391702 SAMN37845414-rid19841533.denovo.20, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNWVE010000030.1 Salmonella enterica strain PNUSAS391702 SAMN37845414-rid19841533.guided.25, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNWVE010000017.1 Salmonella enterica strain PNUSAS391702 SAMN37845414-rid19841533.denovo.20, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWVE010000029.1 Salmonella enterica strain PNUSAS391702 SAMN37845414-rid19841533.guided.22, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNWVE010000017.1 Salmonella enterica strain PNUSAS391702 SAMN37845414-rid19841533.denovo.20, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNWVE010000029.1 Salmonella enterica strain PNUSAS391702 SAMN37845414-rid19841533.guided.22, whole genome shotgun sequence	9840..11114	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNWVE010000017.1 Salmonella enterica strain PNUSAS391702 SAMN37845414-rid19841533.denovo.20, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNWVE010000029.1 Salmonella enterica strain PNUSAS391702 SAMN37845414-rid19841533.guided.22, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNWVE010000016.1 Salmonella enterica strain PNUSAS391702 SAMN37845414-rid19841533.denovo.19, whole genome shotgun sequence	4434..4684																																																						avrA	ABNWVE010000002.1	553473..554342	99.77	870	0						
GCA_032737085.1_PDT001940915.1_genomic.fna	Salmonella_enterica	0.5209	225.556 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		5	ColpVC,IncFIB(S),IncFIB(pHCM2),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWVG010000001.1 Salmonella enterica strain PNUSAS391588 SAMN37844958-rid19838943.denovo.01, whole genome shotgun sequence	380093..380530	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWVG010000059.1 Salmonella enterica strain PNUSAS391588 SAMN37844958-rid19838943.guided.34, whole genome shotgun sequence	1983..2420	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	97.41	193 / 193	ABNWVG010000047.1 Salmonella enterica strain PNUSAS391588 SAMN37844958-rid19838943.denovo.50, whole genome shotgun sequence	1653..1845	enterobacteriales	IncFIB(S)	100	643 / 643	ABNWVG010000022.1 Salmonella enterica strain PNUSAS391588 SAMN37844958-rid19838943.denovo.23, whole genome shotgun sequence	44744..45386		enterobacteriales	IncFIB(pHCM2)	98.4	875 / 875	ABNWVG010000015.1 Salmonella enterica strain PNUSAS391588 SAMN37844958-rid19838943.denovo.15, whole genome shotgun sequence	38916..39790		enterobacteriales	IncFII(S)	100	262 / 262	ABNWVG010000022.1 Salmonella enterica strain PNUSAS391588 SAMN37844958-rid19838943.denovo.23, whole genome shotgun sequence	29398..29659		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNWVG010000024.1 Salmonella enterica strain PNUSAS391588 SAMN37844958-rid19838943.denovo.26, whole genome shotgun sequence	30173..30314																											avrA	ABNWVG010000004.1	176463..177332	99.885	870	0						
GCA_032737105.1_PDT001940906.1_genomic.fna	Salmonella_enterica	0.5205	395.067 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWVH010000001.1 Salmonella enterica strain PNUSAS391656 SAMN37844949-rid19840243.denovo.01, whole genome shotgun sequence	517672..518109	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWVH010000027.1 Salmonella enterica strain PNUSAS391656 SAMN37844949-rid19840243.guided.18, whole genome shotgun sequence	10684..11121	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWVH010000008.1	94361..95229	99.425	870	0						
GCA_032737115.1_PDT001940796.1_genomic.fna	Salmonella_enterica	0.5227	527.014 KB	3	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWVF010000001.1 Salmonella enterica strain FDA1234226-S010-023 SAMN37844015-rid19839943.denovo.01, whole genome shotgun sequence	1302229..1302666	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWVF010000018.1 Salmonella enterica strain FDA1234226-S010-023 SAMN37844015-rid19839943.guided.14, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032737145.1_PDT001940794.1_genomic.fna	Salmonella_enterica	0.5202	402.473 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWVJ010000001.1 Salmonella enterica strain PNUSAS391609 SAMN37844019-rid19839923.denovo.01, whole genome shotgun sequence	433655..434092	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWVJ010000040.1 Salmonella enterica strain PNUSAS391609 SAMN37844019-rid19839923.guided.17, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWVJ010000002.1	497618..498486	99.425	870	0						
GCA_032737165.1_PDT001940795.1_genomic.fna	Salmonella_enterica	0.5209	271.452 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWVI010000001.1 Salmonella enterica strain PNUSAS391612 SAMN37844018-rid19839933.denovo.01, whole genome shotgun sequence	414217..414654	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWVI010000038.1 Salmonella enterica strain PNUSAS391612 SAMN37844018-rid19839933.guided.22, whole genome shotgun sequence	32265..32702	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWVI010000013.1	93868..94736	99.195	870	0						
GCA_032737265.1_PDT001940783.1_genomic.fna	Salmonella_enterica	0.522	260.259 KB	6	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNWVN010000001.1 Salmonella enterica strain FDA1235040-C002-001 SAMN37832766-rid19838533.denovo.01, whole genome shotgun sequence	403419..403856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNWVN010000041.1 Salmonella enterica strain FDA1235040-C002-001 SAMN37832766-rid19838533.guided.25, whole genome shotgun sequence	8048..8485	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNWVN010000029.1 Salmonella enterica strain FDA1235040-C002-001 SAMN37832766-rid19838533.denovo.32, whole genome shotgun sequence	547..675																																																																	
GCA_032737365.1_PDT001940765.1_genomic.fna	Salmonella_enterica	0.521	417.681 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWVU010000001.1 Salmonella enterica strain PNUSAS391498 SAMN37831716-rid19839833.denovo.01, whole genome shotgun sequence	149578..150015	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWVU010000020.1 Salmonella enterica strain PNUSAS391498 SAMN37831716-rid19839833.guided.18, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032737385.1_PDT001940754.1_genomic.fna	Salmonella_enterica	0.5212	476.57 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWVT010000001.1 Salmonella enterica strain PNUSAS391499 SAMN37831687-rid19839803.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWVT010000029.1 Salmonella enterica strain PNUSAS391499 SAMN37831687-rid19839803.guided.21, whole genome shotgun sequence	7423..7860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWVT010000015.1 Salmonella enterica strain PNUSAS391499 SAMN37831687-rid19839803.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNWVT010000015.1 Salmonella enterica strain PNUSAS391499 SAMN37831687-rid19839803.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNWVT010000002.1	553077..553946	99.54	870	0						
GCA_032737405.1_PDT001940737.1_genomic.fna	Salmonella_enterica	0.5208	394.306 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_4	371	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNWVV010000004.1 Salmonella enterica strain PNUSAS391501 SAMN37831699-rid19837023.denovo.04, whole genome shotgun sequence	251874..252311	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNWVV010000027.1 Salmonella enterica strain PNUSAS391501 SAMN37831699-rid19837023.guided.21, whole genome shotgun sequence	5762..6199	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWVV010000001.1	182483..183351	99.425	870	0						
GCA_032737425.1_PDT001940722.1_genomic.fna	Salmonella_enterica	0.5219	219.321 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWVW010000001.1 Salmonella enterica strain PNUSAS391510 SAMN37831686-rid19836983.denovo.01, whole genome shotgun sequence	381672..382109	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWVW010000047.1 Salmonella enterica strain PNUSAS391510 SAMN37831686-rid19836983.guided.37, whole genome shotgun sequence	9283..9720	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWVW010000003.1	174491..175359	99.77	870	0						
GCA_032737445.1_PDT001940714.1_genomic.fna	Salmonella_enterica	0.5222	412.347 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNWVX010000001.1 Salmonella enterica strain PNUSAS391442 SAMN37831593-rid19840563.denovo.01, whole genome shotgun sequence	683910..684347	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNWVX010000022.1 Salmonella enterica strain PNUSAS391442 SAMN37831593-rid19840563.guided.14, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWVX010000002.1	563804..564673	99.77	870	0						
GCA_032737465.1_PDT001940708.1_genomic.fna	Salmonella_enterica	0.5223	719.072 KB	2	aroC_50,dnaN_63,hemD_25,hisD_72,purE_59,sucA_292,thrA_63	1515	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_63	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_59	sucA	100	100	sucA_292	thrA	100	100	thrA_63	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNWVY010000001.1 Salmonella enterica strain PNUSAS391431 SAMN37831590-rid19839663.denovo.01, whole genome shotgun sequence	644184..644621	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNWVY010000017.1 Salmonella enterica strain PNUSAS391431 SAMN37831590-rid19839663.guided.15, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWVY010000003.1	553395..554264	99.425	870	0						
GCA_032737485.1_PDT001940709.1_genomic.fna	Salmonella_enterica	0.522	440.458 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWVZ010000001.1 Salmonella enterica strain PNUSAS391440 SAMN37831610-rid19839673.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWVZ010000036.1 Salmonella enterica strain PNUSAS391440 SAMN37831610-rid19839673.guided.23, whole genome shotgun sequence	8032..8469	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNWVZ010000014.1 Salmonella enterica strain PNUSAS391440 SAMN37831610-rid19839673.denovo.14, whole genome shotgun sequence	69859..70000																																																						avrA	ABNWVZ010000002.1	94085..94954	99.655	870	0						
GCA_032737505.1_PDT001940707.1_genomic.fna	Salmonella_enterica	0.5207	406.451 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWWA010000001.1 Salmonella enterica strain PNUSAS391434 SAMN37831596-rid19836933.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWWA010000025.1 Salmonella enterica strain PNUSAS391434 SAMN37831596-rid19836933.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNWWA010000015.1 Salmonella enterica strain PNUSAS391434 SAMN37831596-rid19836933.denovo.15, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNWWA010000015.1 Salmonella enterica strain PNUSAS391434 SAMN37831596-rid19836933.denovo.15, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNWWA010000016.1 Salmonella enterica strain PNUSAS391434 SAMN37831596-rid19836933.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNWWA010000002.1	553545..554414	99.54	870	0						
GCA_032737525.1_PDT001940702.1_genomic.fna	Salmonella_enterica	0.5202	539.788 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWWC010000001.1 Salmonella enterica strain PNUSAS391443 SAMN37831586-rid19836923.denovo.01, whole genome shotgun sequence	644337..644774	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWWC010000049.1 Salmonella enterica strain PNUSAS391443 SAMN37831586-rid19836923.guided.21, whole genome shotgun sequence	10980..11417	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	99.2	377 / 377	ABNWWC010000014.1 Salmonella enterica strain PNUSAS391443 SAMN37831586-rid19836923.denovo.15, whole genome shotgun sequence	4499..4875																																																																	
GCA_032737605.1_PDT001940704.1_genomic.fna	Salmonella_enterica	0.5198	442.384 KB	5	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWWB010000001.1 Salmonella enterica strain PNUSAS391441 SAMN37831595-rid19840553.denovo.01, whole genome shotgun sequence	493338..493775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWWB010000043.1 Salmonella enterica strain PNUSAS391441 SAMN37831595-rid19840553.guided.23, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	97.93	193 / 193	ABNWWB010000028.1 Salmonella enterica strain PNUSAS391441 SAMN37831595-rid19840553.denovo.31, whole genome shotgun sequence	1532..1724																																																						avrA	ABNWWB010000003.1	128277..129146	98.966	870	0						
GCA_032737925.1_PDT001940603.1_genomic.fna	Salmonella_enterica	0.5217	208.73 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGAL010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -12 SAMN32778112-rid19839373.denovo.02, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGAL010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -12 SAMN32778112-rid19839373.guided.46, whole genome shotgun sequence	2038..2475	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGAL010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -12 SAMN32778112-rid19839373.denovo.17, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	DAQGAL010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -12 SAMN32778112-rid19839373.denovo.17, whole genome shotgun sequence	30407..30668																																																avrA	DAQGAL010000004.1	174643..175511	100	869	0						
GCA_032737945.1_PDT001940602.1_genomic.fna	Salmonella_enterica	0.5218	186.044 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGAN010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -13 SAMN32778113-rid19839363.denovo.02, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGAN010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -13 SAMN32778113-rid19839363.guided.46, whole genome shotgun sequence	2106..2543	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGAN010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -13 SAMN32778113-rid19839363.denovo.19, whole genome shotgun sequence	48415..49057	enterobacteriales	IncFII(S)	100	262 / 262	DAQGAN010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -13 SAMN32778113-rid19839363.denovo.19, whole genome shotgun sequence	64142..64403																																																avrA	DAQGAN010000007.1	174641..175509	100	869	0						
GCA_032737965.1_PDT001940598.1_genomic.fna	Salmonella_enterica	0.5217	180.842 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGAM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -16 SAMN32778116-rid19837893.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGAM010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -16 SAMN32778116-rid19837893.guided.50, whole genome shotgun sequence	2978..3415	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGAM010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -16 SAMN32778116-rid19837893.denovo.16, whole genome shotgun sequence	48415..49057	enterobacteriales	IncFII(S)	100	262 / 262	DAQGAM010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -16 SAMN32778116-rid19837893.denovo.16, whole genome shotgun sequence	64142..64403																																																avrA	DAQGAM010000009.1	95312..96180	100	869	0						
GCA_032737985.1_PDT001940597.1_genomic.fna	Salmonella_enterica	0.5217	328.704 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGAO010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -17 SAMN32778117-rid19840443.denovo.13, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.73	366/438	DAQGAO010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -17 SAMN32778117-rid19840443.guided.40, whole genome shotgun sequence	1..366	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGAO010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -17 SAMN32778117-rid19840443.denovo.15, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	DAQGAO010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -17 SAMN32778117-rid19840443.denovo.15, whole genome shotgun sequence	64139..64400																																																avrA	DAQGAO010000004.1	174641..175509	100	869	0						
GCA_032738045.1_PDT001941063.1_genomic.fna	Salmonella_enterica	0.5207	490.178 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWWG010000001.1 Salmonella enterica strain PNUSAS391719 SAMN37845404-rid19841493.denovo.01, whole genome shotgun sequence	774554..774991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWWG010000023.1 Salmonella enterica strain PNUSAS391719 SAMN37845404-rid19841493.guided.13, whole genome shotgun sequence	42790..43227	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWWG010000012.1 Salmonella enterica strain PNUSAS391719 SAMN37845404-rid19841493.denovo.14, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNWWG010000015.1 Salmonella enterica strain PNUSAS391719 SAMN37845404-rid19841493.denovo.18, whole genome shotgun sequence	3395..3656																																																avrA	ABNWWG010000002.1	585348..586217	99.54	870	0						
GCA_032738065.1_PDT001941066.1_genomic.fna	Salmonella_enterica	0.5219	713.074 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNWWF010000001.1 Salmonella enterica strain PNUSAS391705 SAMN37845410-rid19841513.denovo.01, whole genome shotgun sequence	684025..684462	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNWWF010000018.1 Salmonella enterica strain PNUSAS391705 SAMN37845410-rid19841513.guided.12, whole genome shotgun sequence	10738..11175	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWWF010000003.1	563686..564555	99.77	870	0						
GCA_032738145.1_PDT001940893.1_genomic.fna	Salmonella_enterica	0.5223	728.966 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWWL010000001.1 Salmonella enterica strain PNUSAS390813 SAMN37844560-rid19840723.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.53	426/438	ABNWWL010000020.1 Salmonella enterica strain PNUSAS390813 SAMN37844560-rid19840723.guided.16, whole genome shotgun sequence	1..426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWWL010000003.1	562128..562998	99.656	871	0						
GCA_032738315.1_PDT001940594.1_genomic.fna	Salmonella_enterica	0.5218	273.328 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGAT010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -20 SAMN32778120-rid19837883.denovo.03, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGAT010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -20 SAMN32778120-rid19837883.guided.35, whole genome shotgun sequence	3648..4085	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGAT010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -20 SAMN32778120-rid19837883.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	DAQGAT010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -20 SAMN32778120-rid19837883.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	DAQGAT010000007.1	98459..99327	100	869	0						
GCA_032738355.1_PDT001940591.1_genomic.fna	Salmonella_enterica	0.5216	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGAX010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -23 SAMN32778123-rid19839313.denovo.03, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGAX010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -23 SAMN32778123-rid19839313.guided.21, whole genome shotgun sequence	19685..20122	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGAX010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -23 SAMN32778123-rid19839313.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	DAQGAX010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -23 SAMN32778123-rid19839313.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	DAQGAX010000005.1	174651..175519	100	869	0						
GCA_032738375.1_PDT001940592.1_genomic.fna	Salmonella_enterica	0.5218	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGAW010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -22 SAMN32778122-rid19839323.denovo.03, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGAW010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -22 SAMN32778122-rid19839323.guided.35, whole genome shotgun sequence	476..913	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGAW010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -22 SAMN32778122-rid19839323.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	DAQGAW010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -22 SAMN32778122-rid19839323.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	DAQGAW010000005.1	174651..175519	100	869	0						
GCA_032738405.1_PDT001940593.1_genomic.fna	Salmonella_enterica	0.5216	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGAV010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -21 SAMN32778121-rid19839333.denovo.03, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGAV010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -21 SAMN32778121-rid19839333.guided.35, whole genome shotgun sequence	1755..2192	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGAV010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -21 SAMN32778121-rid19839333.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	DAQGAV010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -21 SAMN32778121-rid19839333.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	DAQGAV010000005.1	175018..175886	100	869	0						
GCA_032738495.1_PDT001940586.1_genomic.fna	Salmonella_enterica	0.5218	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGAZ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -26 SAMN32778126-rid19837863.denovo.03, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGAZ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -26 SAMN32778126-rid19837863.guided.32, whole genome shotgun sequence	8513..8950	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGAZ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -26 SAMN32778126-rid19837863.denovo.16, whole genome shotgun sequence	48448..49090	enterobacteriales	IncFII(S)	100	262 / 262	DAQGAZ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -26 SAMN32778126-rid19837863.denovo.16, whole genome shotgun sequence	64175..64436																																																avrA	DAQGAZ010000005.1	174651..175519	100	869	0						
GCA_032738575.1_PDT001940584.1_genomic.fna	Salmonella_enterica	0.5218	347.446 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGBA010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -28 SAMN32778128-rid19837853.denovo.03, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGBA010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -28 SAMN32778128-rid19837853.guided.33, whole genome shotgun sequence	121..558	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGBA010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -28 SAMN32778128-rid19837853.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	DAQGBA010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -28 SAMN32778128-rid19837853.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	DAQGBA010000005.1	174651..175519	100	869	0						
GCA_032739155.1_PDT001940469.1_genomic.fna	Salmonella_enterica	0.5217	700.115 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWWM010000001.1 Salmonella enterica strain PNUSAS390827 SAMN37831073-rid19836063.denovo.01, whole genome shotgun sequence	510589..511026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWWM010000019.1 Salmonella enterica strain PNUSAS390827 SAMN37831073-rid19836063.guided.15, whole genome shotgun sequence	3242..3679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWWM010000002.1	544416..545284	99.425	870	0						
GCA_032739195.1_PDT001940377.1_genomic.fna	Salmonella_enterica	0.5233	115.736 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQGBT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00042238 SAMN37819796-rid19834053.denovo.01, whole genome shotgun sequence	477896..478333	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQGBT010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00042238 SAMN37819796-rid19834053.guided.32, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQGBT010000024.1	39536..40405	99.77	870	0						
GCA_032739255.1_PDT001940359.1_genomic.fna	Salmonella_enterica	0.5221	62.356 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGBV010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045856 SAMN37819898-rid19828013.denovo.012, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGBV010000145.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045856 SAMN37819898-rid19828013.guided.029, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQGBV010000019.1	43810..44679	99.885	870	0						
GCA_032739285.1_PDT001940361.1_genomic.fna	Salmonella_enterica	0.5214	118.556 KB	13	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGBU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00044513 SAMN37819809-rid19832683.denovo.01, whole genome shotgun sequence	162472..162909	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQGBU010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00044513 SAMN37819809-rid19832683.guided.25, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQGBU010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00044513 SAMN37819809-rid19832683.denovo.66, whole genome shotgun sequence	2656..3516	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQGBU010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00044513 SAMN37819809-rid19832683.guided.68, whole genome shotgun sequence	1931..2791	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGBU010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00044513 SAMN37819809-rid19832683.denovo.36, whole genome shotgun sequence	40526..41168	enterobacteriales	IncFII(S)	100	262 / 262	DAQGBU010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00044513 SAMN37819809-rid19832683.denovo.60, whole genome shotgun sequence	3425..3686																																																avrA	DAQGBU010000011.1	43602..44471	99.54	870	0						
GCA_032739305.1_PDT001940363.1_genomic.fna	Salmonella_enterica	0.5202	489.746 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGBS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022137 SAMN37819538-rid19832693.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQGBS010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022137 SAMN37819538-rid19832693.guided.15, whole genome shotgun sequence	42855..43292	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	DAQGBS010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022137 SAMN37819538-rid19832693.denovo.17, whole genome shotgun sequence	5285..6145	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQGBS010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022137 SAMN37819538-rid19832693.denovo.17, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQGBS010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022137 SAMN37819538-rid19832693.denovo.17, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQGBS010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022137 SAMN37819538-rid19832693.denovo.17, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQGBS010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022137 SAMN37819538-rid19832693.denovo.17, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	DAQGBS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022137 SAMN37819538-rid19832693.guided.26, whole genome shotgun sequence	3945..4805	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQGBS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022137 SAMN37819538-rid19832693.guided.26, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQGBS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022137 SAMN37819538-rid19832693.guided.26, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQGBS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022137 SAMN37819538-rid19832693.guided.26, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQGBS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022137 SAMN37819538-rid19832693.guided.26, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGBS010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022137 SAMN37819538-rid19832693.denovo.16, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQGBS010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022137 SAMN37819538-rid19832693.denovo.24, whole genome shotgun sequence	3414..3675		enterobacteriales	IncX1	98.66	374 / 374	DAQGBS010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022137 SAMN37819538-rid19832693.denovo.17, whole genome shotgun sequence	11911..12284																																									avrA	DAQGBS010000002.1	553383..554252	99.54	870	0						
GCA_032739385.1_PDT001940308.1_genomic.fna	Salmonella_enterica	0.5219	90.26 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGBY010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047437 SAMN37820030-rid19829373.denovo.002, whole genome shotgun sequence	12525..12962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGBY010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047437 SAMN37820030-rid19829373.guided.051, whole genome shotgun sequence	14775..15212	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGBY010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047437 SAMN37820030-rid19829373.denovo.017, whole genome shotgun sequence	44650..45292	enterobacteriales	IncFII(S)	100	262 / 262	DAQGBY010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047437 SAMN37820030-rid19829373.denovo.017, whole genome shotgun sequence	60377..60638																																																avrA	DAQGBY010000011.1	105299..106168	99.885	870	0						
GCA_032739425.1_PDT001940353.1_genomic.fna	Salmonella_enterica	0.5215	80.51 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGBW010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045865 SAMN37819904-rid19835403.denovo.003, whole genome shotgun sequence	133833..134270	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGBW010000126.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045865 SAMN37819904-rid19835403.guided.015, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGBW010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045865 SAMN37819904-rid19835403.denovo.089, whole genome shotgun sequence	9134..9776	enterobacteriales	IncFII(S)	100	262 / 262	DAQGBW010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045865 SAMN37819904-rid19835403.denovo.060, whole genome shotgun sequence	12619..12880																																																avrA	DAQGBW010000001.1	107908..108777	99.885	870	0						
GCA_032739445.1_PDT001940351.1_genomic.fna	Salmonella_enterica	0.522	65.362 KB	23	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGBX010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045875 SAMN37819906-rid19832673.denovo.025, whole genome shotgun sequence	11361..11798	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGBX010000138.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045875 SAMN37819906-rid19832673.guided.056, whole genome shotgun sequence	14712..15149	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGBX010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045875 SAMN37819906-rid19832673.denovo.093, whole genome shotgun sequence	9229..9871	enterobacteriales	IncFII(S)	100	262 / 262	DAQGBX010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045875 SAMN37819906-rid19832673.denovo.042, whole genome shotgun sequence	12991..13252																																																avrA	DAQGBX010000003.1	107914..108783	99.885	870	0						
GCA_032739465.1_PDT001940296.1_genomic.fna	Salmonella_enterica	0.5209	73.931 KB	24	aroC_183,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	568	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_183	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGBZ010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047955 SAMN37820041-rid19831353.denovo.022, whole genome shotgun sequence	15460..15897	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGBZ010000127.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047955 SAMN37820041-rid19831353.guided.010, whole genome shotgun sequence	9823..10260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQGBZ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047955 SAMN37820041-rid19831353.denovo.052, whole genome shotgun sequence	19069..19210																																																						avrA	DAQGBZ010000007.1	107941..108810	99.885	870	0						
GCA_032739485.1_PDT001940302.1_genomic.fna	Salmonella_enterica	0.5215	122.258 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGCA010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047572 SAMN37820036-rid19832663.denovo.12, whole genome shotgun sequence	12493..12930	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGCA010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047572 SAMN37820036-rid19832663.guided.57, whole genome shotgun sequence	9036..9473	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGCA010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047572 SAMN37820036-rid19832663.denovo.18, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQGCA010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047572 SAMN37820036-rid19832663.denovo.18, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQGCA010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00047572 SAMN37820036-rid19832663.denovo.38, whole genome shotgun sequence	22488..22624																																									avrA	DAQGCA010000011.1	39625..40494	99.885	870	0						
GCA_032739565.1_PDT001940288.1_genomic.fna	Salmonella_enterica	0.5207	93.804 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_345*,sucA_9,thrA_2	Unknown	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI(Gamma),IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	99.749373433584	100	purE_345*	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGCB010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051003 SAMN37820135-rid19829363.denovo.002, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGCB010000107.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051003 SAMN37820135-rid19829363.guided.035, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGCB010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051003 SAMN37820135-rid19829363.denovo.016, whole genome shotgun sequence	48407..49049	enterobacteriales	IncFII(S)	100	262 / 262	DAQGCB010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051003 SAMN37820135-rid19829363.denovo.016, whole genome shotgun sequence	64134..64395		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQGCB010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051003 SAMN37820135-rid19829363.denovo.018, whole genome shotgun sequence	15829..15965		enterobacteriales	IncX4	99.86	712 / 712	DAQGCB010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00051003 SAMN37820135-rid19829363.denovo.043, whole genome shotgun sequence	74..785																																		avrA	DAQGCB010000006.1	107914..108783	99.885	870	0						
GCA_032739585.1_PDT001941107.1_genomic.fna	Salmonella_enterica	0.5187	287.364 KB	6	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		5	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI2,IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWWP010000001.1 Salmonella enterica strain PNUSAS391826 SAMN37846083-rid19842533.denovo.01, whole genome shotgun sequence	491222..491659	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWWP010000056.1 Salmonella enterica strain PNUSAS391826 SAMN37846083-rid19842533.guided.30, whole genome shotgun sequence	25532..25969	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNWWP010000019.1 Salmonella enterica strain PNUSAS391826 SAMN37846083-rid19842533.denovo.19, whole genome shotgun sequence	29596..30238	enterobacteriales	IncFII(S)	100	262 / 262	ABNWWP010000019.1 Salmonella enterica strain PNUSAS391826 SAMN37846083-rid19842533.denovo.19, whole genome shotgun sequence	45323..45584		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNWWP010000029.1 Salmonella enterica strain PNUSAS391826 SAMN37846083-rid19842533.denovo.31, whole genome shotgun sequence	13370..13511		enterobacteriales	IncI2	100	324 / 324	ABNWWP010000026.1 Salmonella enterica strain PNUSAS391826 SAMN37846083-rid19842533.denovo.26, whole genome shotgun sequence	30755..31078		enterobacteriales	IncX1	98.4	374 / 374	ABNWWP010000025.1 Salmonella enterica strain PNUSAS391826 SAMN37846083-rid19842533.denovo.25, whole genome shotgun sequence	772..1145																											avrA	ABNWWP010000008.1	39483..40352	99.885	870	0						
GCA_032739605.1_PDT001941105.1_genomic.fna	Salmonella_enterica	0.5218	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWWQ010000004.1 Salmonella enterica strain PNUSAS391823 SAMN37846086-rid19841723.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWWQ010000043.1 Salmonella enterica strain PNUSAS391823 SAMN37846086-rid19841723.guided.21, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNWWQ010000014.1 Salmonella enterica strain PNUSAS391823 SAMN37846086-rid19841723.denovo.14, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNWWQ010000014.1 Salmonella enterica strain PNUSAS391823 SAMN37846086-rid19841723.denovo.14, whole genome shotgun sequence	30407..30668																																																avrA	ABNWWQ010000003.1	401537..402405	100	869	0						
GCA_032739625.1_PDT001941102.1_genomic.fna	Salmonella_enterica	0.5209	324.739 KB	5	aroC_10,dnaN_457*,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072*	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	99.8003992015968	100	dnaN_457*	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWWR010000001.1 Salmonella enterica strain PNUSAS391825 SAMN37846088-rid19841693.denovo.01, whole genome shotgun sequence	591293..591730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWWR010000049.1 Salmonella enterica strain PNUSAS391825 SAMN37846088-rid19841693.guided.19, whole genome shotgun sequence	6316..6753	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNWWR010000015.1 Salmonella enterica strain PNUSAS391825 SAMN37846088-rid19841693.denovo.15, whole genome shotgun sequence	44647..45289	enterobacteriales	IncFII(S)	100	262 / 262	ABNWWR010000015.1 Salmonella enterica strain PNUSAS391825 SAMN37846088-rid19841693.denovo.15, whole genome shotgun sequence	60374..60635																																																avrA	ABNWWR010000007.1	39470..40339	99.885	870	0						
GCA_032739795.1_PDT001940278.1_genomic.fna	Salmonella_enterica	0.5199	247.003 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	4	aac(6')-Iaa,aadA5,aadA5,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,dfrA17,dfrA17	1	gyrA_p.D87G	3	IncFIB(S),IncFII(S),IncX1,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGCC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073198 SAMN37820144-rid19830393.denovo.01, whole genome shotgun sequence	537264..537701	Amikacin, Tobramycin	NC_003197	aadA5	100	789/789	DAQGCC010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073198 SAMN37820144-rid19830393.denovo.25, whole genome shotgun sequence	11481..12269	Spectinomycin, Streptomycin	AF137361	aadA5	100	789/789	DAQGCC010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073198 SAMN37820144-rid19830393.guided.24, whole genome shotgun sequence	24007..24795	Spectinomycin, Streptomycin	AF137361	aac(6')-Iaa	96.35	438/438	DAQGCC010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073198 SAMN37820144-rid19830393.guided.27, whole genome shotgun sequence	15446..15883	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQGCC010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073198 SAMN37820144-rid19830393.denovo.25, whole genome shotgun sequence	18721..19581	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQGCC010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073198 SAMN37820144-rid19830393.guided.24, whole genome shotgun sequence	16695..17555	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	dfrA17	100	474/474	DAQGCC010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073198 SAMN37820144-rid19830393.denovo.25, whole genome shotgun sequence	12400..12873	Trimethoprim	FJ460238	dfrA17	100	474/474	DAQGCC010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073198 SAMN37820144-rid19830393.guided.24, whole genome shotgun sequence	23403..23876	Trimethoprim	FJ460238																																																																																																																																																																																																																																																																																																																																																																																																																gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGCC010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073198 SAMN37820144-rid19830393.denovo.22, whole genome shotgun sequence	40535..41177	enterobacteriales	IncFII(S)	100	262 / 262	DAQGCC010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073198 SAMN37820144-rid19830393.denovo.34, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	98.66	374 / 374	DAQGCC010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073198 SAMN37820144-rid19830393.denovo.25, whole genome shotgun sequence	29582..29955		enterobacteriales	IncX1	98.66	374 / 374	DAQGCC010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073198 SAMN37820144-rid19830393.guided.24, whole genome shotgun sequence	6321..6694																																		avrA	DAQGCC010000008.1	140958..141827	99.54	870	0						
GCA_032740115.1_PDT001941075.1_genomic.fna	Salmonella_enterica	0.5211	430.295 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWXA010000001.1 Salmonella enterica strain PNUSAS391709 SAMN37845408-rid19841563.denovo.01, whole genome shotgun sequence	404191..404628	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWXA010000036.1 Salmonella enterica strain PNUSAS391709 SAMN37845408-rid19841563.guided.14, whole genome shotgun sequence	36023..36460	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWXA010000010.1	120503..121371	99.195	870	0						
GCA_032740175.1_PDT001941073.1_genomic.fna	Salmonella_enterica	0.5174	298.538 KB	5	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Ic,aph(3')-IIa,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Ic,aph(3')-IIa,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	2	IncHI2,IncHI2A	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNWXB010000001.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.denovo.01, whole genome shotgun sequence	383907..384344	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWXB010000010.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.denovo.10, whole genome shotgun sequence	116016..116852	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWXB010000010.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.denovo.10, whole genome shotgun sequence	115214..116016	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWXB010000010.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.denovo.10, whole genome shotgun sequence	115213..116016	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWXB010000010.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.denovo.10, whole genome shotgun sequence	115213..116016	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWXB010000010.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.denovo.10, whole genome shotgun sequence	115213..116016	Streptomycin	AF321550	aph(6)-Ic	100	801/801	ABNWXB010000022.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.denovo.29, whole genome shotgun sequence	699..1499	Streptomycin	X01702	aph(3')-IIa	100	795/795	ABNWXB010000022.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.denovo.29, whole genome shotgun sequence	1939..2733	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	aac(6')-Iaa	97.26	438/438	ABNWXB010000030.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.guided.20, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWXB010000031.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.guided.22, whole genome shotgun sequence	2795..3631	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWXB010000031.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.guided.22, whole genome shotgun sequence	1993..2795	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWXB010000031.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.guided.22, whole genome shotgun sequence	1992..2795	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWXB010000031.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.guided.22, whole genome shotgun sequence	1992..2795	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWXB010000031.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.guided.22, whole genome shotgun sequence	1992..2795	Streptomycin	AF321550	aph(6)-Ic	100	801/801	ABNWXB010000035.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.guided.28, whole genome shotgun sequence	1291..2091	Streptomycin	X01702	aph(3')-IIa	100	795/795	ABNWXB010000035.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.guided.28, whole genome shotgun sequence	57..851	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	fosA7	100	423/423	ABNWXB010000011.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.denovo.11, whole genome shotgun sequence	166241..166663	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNWXB010000032.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.guided.23, whole genome shotgun sequence	21827..22249	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	ABNWXB010000010.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.denovo.10, whole genome shotgun sequence	108679..109884	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNWXB010000034.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.guided.27, whole genome shotgun sequence	2631..3836	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNWXB010000020.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.denovo.25, whole genome shotgun sequence	10118..10444	enterobacteriales	IncHI2A	99.52	630 / 630	ABNWXB010000010.1 Salmonella enterica strain PNUSAS391717 SAMN37845401-rid19841553.denovo.10, whole genome shotgun sequence	11024..11653																																																avrA	ABNWXB010000002.1	518277..519146	99.54	870	0						
GCA_032740195.1_PDT001941071.1_genomic.fna	Salmonella_enterica	0.5191	368.133 KB	6	aroC_3,dnaN_3!,dnaN_3!,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	Unknown	4:f,g,s:-	5	aac(6')-Iaa,aadA7,aadA7,aac(6')-Iaa,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3!	dnaN	100	100	dnaN_3!	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWXD010000001.1 Salmonella enterica strain PNUSAS391718 SAMN37845411-rid19842363.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aadA7	99	798/798	ABNWXD010000012.1 Salmonella enterica strain PNUSAS391718 SAMN37845411-rid19842363.denovo.12, whole genome shotgun sequence	54487..55284	Spectinomycin, Streptomycin	AF224733	aadA7	99	798/798	ABNWXD010000037.1 Salmonella enterica strain PNUSAS391718 SAMN37845411-rid19842363.guided.22, whole genome shotgun sequence	53919..54716	Spectinomycin, Streptomycin	AF224733	aac(6')-Iaa	97.95	438/438	ABNWXD010000040.1 Salmonella enterica strain PNUSAS391718 SAMN37845411-rid19842363.guided.32, whole genome shotgun sequence	3998..4435	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNWXD010000006.1 Salmonella enterica strain PNUSAS391718 SAMN37845411-rid19842363.denovo.06, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNWXD010000038.1 Salmonella enterica strain PNUSAS391718 SAMN37845411-rid19842363.guided.29, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNWXD010000012.1 Salmonella enterica strain PNUSAS391718 SAMN37845411-rid19842363.denovo.12, whole genome shotgun sequence	55789..56628	Sulfamethoxazole	U12338	sul1	100	840/840	ABNWXD010000037.1 Salmonella enterica strain PNUSAS391718 SAMN37845411-rid19842363.guided.22, whole genome shotgun sequence	55221..56060	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNWXD010000012.1 Salmonella enterica strain PNUSAS391718 SAMN37845411-rid19842363.denovo.12, whole genome shotgun sequence	65924..67123	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWXD010000041.1 Salmonella enterica strain PNUSAS391718 SAMN37845411-rid19842363.guided.34, whole genome shotgun sequence	3931..5130	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNWXD010000015.1 Salmonella enterica strain PNUSAS391718 SAMN37845411-rid19842363.denovo.15, whole genome shotgun sequence	83485..83626																																																						avrA	ABNWXD010000002.1	67021..67890	99.195	870	0						
GCA_032740215.1_PDT001941069.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWXE010000001.1 Salmonella enterica strain PNUSAS391721 SAMN37845406-rid19842353.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWXE010000022.1 Salmonella enterica strain PNUSAS391721 SAMN37845406-rid19842353.guided.13, whole genome shotgun sequence	34210..34647	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWXE010000012.1 Salmonella enterica strain PNUSAS391721 SAMN37845406-rid19842353.denovo.14, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNWXE010000012.1 Salmonella enterica strain PNUSAS391721 SAMN37845406-rid19842353.denovo.14, whole genome shotgun sequence	53091..53352																																																avrA	ABNWXE010000002.1	553636..554505	99.54	870	0						
GCA_032740295.1_PDT001941062.1_genomic.fna	Salmonella_enterica	0.5192	361.219 KB	6	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWXH010000004.1 Salmonella enterica strain FDA1199253-S001-003 SAMN37845400-rid19841483.denovo.04, whole genome shotgun sequence	254890..255327	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWXH010000036.1 Salmonella enterica strain FDA1199253-S001-003 SAMN37845400-rid19841483.guided.17, whole genome shotgun sequence	8082..8519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWXH010000001.1	497177..498045	99.425	870	0						
GCA_032740325.1_PDT001941072.1_genomic.fna	Salmonella_enterica	0.5206	266.637 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWXC010000002.1 Salmonella enterica strain PNUSAS391706 SAMN37845402-rid19841543.denovo.02, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNWXC010000041.1 Salmonella enterica strain PNUSAS391706 SAMN37845402-rid19841543.guided.16, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABNWXC010000033.1 Salmonella enterica strain PNUSAS391706 SAMN37845402-rid19841543.denovo.36, whole genome shotgun sequence	483..636																																																						avrA	ABNWXC010000006.1	184086..184954	99.77	870	0						
GCA_032740375.1_PDT001941067.1_genomic.fna	Salmonella_enterica	0.5205	685.841 KB	4	aroC_13,dnaN_181,hemD_49,hisD_13,purE_183,sucA_71,thrA_4	617	28:i:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_181	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_183	sucA	100	100	sucA_71	thrA	100	100	thrA_4	28	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	Cotham		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWXI010000001.1 Salmonella enterica strain PNUSAS391711 SAMN37845409-rid19842343.denovo.01, whole genome shotgun sequence	309824..310261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWXI010000032.1 Salmonella enterica strain PNUSAS391711 SAMN37845409-rid19842343.guided.17, whole genome shotgun sequence	5559..5996	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWXI010000003.1	552236..553105	99.425	870	0						
GCA_032740435.1_PDT001941068.1_genomic.fna	Salmonella_enterica	0.5208	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWXF010000001.1 Salmonella enterica strain PNUSAS391707 SAMN37845407-rid19841523.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWXF010000021.1 Salmonella enterica strain PNUSAS391707 SAMN37845407-rid19841523.guided.11, whole genome shotgun sequence	39282..39719	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWXF010000012.1 Salmonella enterica strain PNUSAS391707 SAMN37845407-rid19841523.denovo.14, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNWXF010000015.1 Salmonella enterica strain PNUSAS391707 SAMN37845407-rid19841523.denovo.18, whole genome shotgun sequence	3403..3664																																																avrA	ABNWXF010000002.1	553636..554505	99.54	870	0						
GCA_032740795.1_PDT001940933.1_genomic.fna	Salmonella_enterica	0.5212	436.675 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_603	2783	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_603	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNWXQ010000009.1 Salmonella enterica strain PNUSAS391585 SAMN37844996-rid19840783.denovo.09, whole genome shotgun sequence	145030..145467	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNWXQ010000025.1 Salmonella enterica strain PNUSAS391585 SAMN37844996-rid19840783.guided.16, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWXQ010000008.1	140331..141200	99.54	870	0						
GCA_032740895.1_PDT001940903.1_genomic.fna	Salmonella_enterica	0.5201	622.418 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNWXS010000001.1 Salmonella enterica strain PNUSAS391655 SAMN37844938-rid19840743.denovo.01, whole genome shotgun sequence	503576..504013	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNWXS010000021.1 Salmonella enterica strain PNUSAS391655 SAMN37844938-rid19840743.guided.17, whole genome shotgun sequence	10072..10509	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWXS010000002.1	556619..557487	99.425	870	0						
GCA_032741155.1_PDT001940872.1_genomic.fna	Salmonella_enterica	0.5206	224.775 KB	7	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWXU010000001.1 Salmonella enterica strain PNUSAS391624 SAMN37844520-rid19840143.denovo.01, whole genome shotgun sequence	382648..383085	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWXU010000057.1 Salmonella enterica strain PNUSAS391624 SAMN37844520-rid19840143.guided.28, whole genome shotgun sequence	6872..7309	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWXU010000015.1	93870..94740	99.196	871	0						
GCA_032741215.1_PDT001940896.1_genomic.fna	Salmonella_enterica	0.522	397.338 KB	4	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWXT010000001.1 Salmonella enterica strain PNUSAS391648 SAMN37844944-rid19840213.denovo.01, whole genome shotgun sequence	170670..171107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWXT010000030.1 Salmonella enterica strain PNUSAS391648 SAMN37844944-rid19840213.guided.18, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWXT010000003.1	120799..121668	99.31	870	0						
GCA_032741515.1_PDT001940604.1_genomic.fna	Salmonella_enterica	0.5217	149.826 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGCL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -11 SAMN32778111-rid19837913.denovo.01, whole genome shotgun sequence	52211..52648	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.76	422/438	DAQGCL010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -11 SAMN32778111-rid19837913.guided.55, whole genome shotgun sequence	1..422	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGCL010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -11 SAMN32778111-rid19837913.denovo.15, whole genome shotgun sequence	48404..49046	enterobacteriales	IncFII(S)	100	262 / 262	DAQGCL010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -11 SAMN32778111-rid19837913.denovo.15, whole genome shotgun sequence	64131..64392																																																avrA	DAQGCL010000002.1	174355..175223	100	869	0						
GCA_032741565.1_PDT001940596.1_genomic.fna	Salmonella_enterica	0.5216	348.865 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGCO010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -18 SAMN32778118-rid19839343.denovo.03, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGCO010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -18 SAMN32778118-rid19839343.guided.29, whole genome shotgun sequence	5619..6056	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGCO010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -18 SAMN32778118-rid19839343.denovo.16, whole genome shotgun sequence	44772..45414	enterobacteriales	IncFII(S)	100	262 / 262	DAQGCO010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -18 SAMN32778118-rid19839343.denovo.16, whole genome shotgun sequence	29426..29687																																																avrA	DAQGCO010000006.1	174651..175519	100	869	0						
GCA_032741595.1_PDT001940601.1_genomic.fna	Salmonella_enterica	0.5217	164.038 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGCN010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -14 SAMN32778114-rid19839353.denovo.09, whole genome shotgun sequence	26087..26524	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGCN010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -14 SAMN32778114-rid19839353.guided.45, whole genome shotgun sequence	173..610	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGCN010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -14 SAMN32778114-rid19839353.denovo.18, whole genome shotgun sequence	44751..45393	enterobacteriales	IncFII(S)	100	262 / 262	DAQGCN010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -14 SAMN32778114-rid19839353.denovo.18, whole genome shotgun sequence	29405..29666																																																avrA	DAQGCN010000004.1	98459..99327	100	869	0						
GCA_032741715.1_PDT001940589.1_genomic.fna	Salmonella_enterica	0.5218	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGCM010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -25 SAMN32778125-rid19837873.denovo.03, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGCM010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -25 SAMN32778125-rid19837873.guided.34, whole genome shotgun sequence	2744..3181	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGCM010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -25 SAMN32778125-rid19837873.denovo.16, whole genome shotgun sequence	48448..49090	enterobacteriales	IncFII(S)	100	262 / 262	DAQGCM010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -25 SAMN32778125-rid19837873.denovo.16, whole genome shotgun sequence	64175..64436																																																avrA	DAQGCM010000005.1	175018..175886	100	869	0						
GCA_032741755.1_PDT001940556.1_genomic.fna	Salmonella_enterica	0.5217	225.554 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGCR010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -1 SAMN32778101-rid19839213.denovo.02, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGCR010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -1 SAMN32778101-rid19839213.guided.42, whole genome shotgun sequence	203..640	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGCR010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -1 SAMN32778101-rid19839213.denovo.18, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	DAQGCR010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -1 SAMN32778101-rid19839213.denovo.18, whole genome shotgun sequence	30407..30668																																																avrA	DAQGCR010000004.1	174500..175368	100	869	0						
GCA_032741895.1_PDT001940759.1_genomic.fna	Salmonella_enterica	0.5223	167.369 KB	10	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWXY010000003.1 Salmonella enterica strain PNUSAS391512 SAMN37831692-rid19840593.denovo.03, whole genome shotgun sequence	144270..144707	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWXY010000053.1 Salmonella enterica strain PNUSAS391512 SAMN37831692-rid19840593.guided.35, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032741905.1_PDT001940917.1_genomic.fna	Salmonella_enterica	0.5203	422.219 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWXX010000001.1 Salmonella enterica strain PNUSAS391587 SAMN37844965-rid19840283.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWXX010000031.1 Salmonella enterica strain PNUSAS391587 SAMN37844965-rid19840283.guided.17, whole genome shotgun sequence	13092..13529	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWXX010000021.1 Salmonella enterica strain PNUSAS391587 SAMN37844965-rid19840283.denovo.24, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNWXX010000023.1 Salmonella enterica strain PNUSAS391587 SAMN37844965-rid19840283.denovo.26, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	98.93	374 / 374	ABNWXX010000017.1 Salmonella enterica strain PNUSAS391587 SAMN37844965-rid19840283.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABNWXX010000007.1	174782..175651	99.54	870	0						
GCA_032743175.1_PDT001940595.1_genomic.fna	Salmonella_enterica	0.5216	347.446 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGDG010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -19 SAMN32778119-rid19836623.denovo.03, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGDG010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -19 SAMN32778119-rid19836623.guided.31, whole genome shotgun sequence	10446..10883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGDG010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -19 SAMN32778119-rid19836623.denovo.16, whole genome shotgun sequence	44751..45393	enterobacteriales	IncFII(S)	100	262 / 262	DAQGDG010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -19 SAMN32778119-rid19836623.denovo.16, whole genome shotgun sequence	29405..29666																																																avrA	DAQGDG010000005.1	175018..175886	100	869	0						
GCA_032743215.1_PDT001940600.1_genomic.fna	Salmonella_enterica	0.5216	89.325 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGDH010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -15 SAMN32778115-rid19836633.denovo.013, whole genome shotgun sequence	54715..55152	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGDH010000120.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -15 SAMN32778115-rid19836633.guided.083, whole genome shotgun sequence	6877..7314	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGDH010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -15 SAMN32778115-rid19836633.denovo.017, whole genome shotgun sequence	48399..49041	enterobacteriales	IncFII(S)	100	262 / 262	DAQGDH010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -15 SAMN32778115-rid19836633.denovo.017, whole genome shotgun sequence	64126..64387																																																avrA	DAQGDH010000016.1	7996..8864	100	869	0						
GCA_032743315.1_PDT001940590.1_genomic.fna	Salmonella_enterica	0.5214	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGDI010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -24 SAMN32778124-rid19836613.denovo.04, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGDI010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -24 SAMN32778124-rid19836613.guided.18, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGDI010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -24 SAMN32778124-rid19836613.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	DAQGDI010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -24 SAMN32778124-rid19836613.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	DAQGDI010000005.1	174651..175519	100	869	0						
GCA_032743495.1_PDT001940554.1_genomic.fna	Salmonella_enterica	0.5217	178.489 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGDL010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -3 SAMN32778103-rid19837793.denovo.04, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGDL010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -3 SAMN32778103-rid19837793.guided.65, whole genome shotgun sequence	646..1083	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGDL010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -3 SAMN32778103-rid19837793.denovo.16, whole genome shotgun sequence	48424..49066	enterobacteriales	IncFII(S)	100	262 / 262	DAQGDL010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -3 SAMN32778103-rid19837793.denovo.16, whole genome shotgun sequence	64151..64412																																																avrA	DAQGDL010000006.1	95312..96180	100	869	0						
GCA_032743535.1_PDT001940552.1_genomic.fna	Salmonella_enterica	0.5217	208.731 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGDO010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -5 SAMN32778105-rid19840413.denovo.10, whole genome shotgun sequence	69066..69503	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGDO010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -5 SAMN32778105-rid19840413.guided.48, whole genome shotgun sequence	5771..6208	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGDO010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -5 SAMN32778105-rid19840413.denovo.17, whole genome shotgun sequence	48448..49090	enterobacteriales	IncFII(S)	100	262 / 262	DAQGDO010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -5 SAMN32778105-rid19840413.denovo.17, whole genome shotgun sequence	64175..64436																																																avrA	DAQGDO010000008.1	40729..41597	100	869	0						
GCA_032743575.1_PDT001940548.1_genomic.fna	Salmonella_enterica	0.5217	208.73 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGDQ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -8 SAMN32778108-rid19836433.denovo.02, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGDQ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -8 SAMN32778108-rid19836433.guided.57, whole genome shotgun sequence	357..794	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGDQ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -8 SAMN32778108-rid19836433.denovo.17, whole genome shotgun sequence	48397..49039	enterobacteriales	IncFII(S)	100	262 / 262	DAQGDQ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -8 SAMN32778108-rid19836433.denovo.17, whole genome shotgun sequence	64124..64385																																																avrA	DAQGDQ010000005.1	98459..99327	100	869	0						
GCA_032743595.1_PDT001940550.1_genomic.fna	Salmonella_enterica	0.5217	125.169 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGDP010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -6 SAMN32778106-rid19839203.denovo.03, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGDP010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -6 SAMN32778106-rid19839203.guided.74, whole genome shotgun sequence	632..1069	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGDP010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -6 SAMN32778106-rid19839203.denovo.18, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	DAQGDP010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -6 SAMN32778106-rid19839203.denovo.18, whole genome shotgun sequence	30407..30668																																																avrA	DAQGDP010000007.1	39625..40493	100	869	0						
GCA_032743675.1_PDT001940547.1_genomic.fna	Salmonella_enterica	0.5217	208.73 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGDR010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -9 SAMN32778109-rid19839193.denovo.02, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGDR010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -9 SAMN32778109-rid19839193.guided.62, whole genome shotgun sequence	56..493	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGDR010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -9 SAMN32778109-rid19839193.denovo.13, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	DAQGDR010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -9 SAMN32778109-rid19839193.denovo.13, whole genome shotgun sequence	30407..30668																																																avrA	DAQGDR010000009.1	29797..30665	100	869	0						
GCA_032744355.1_PDT001940357.1_genomic.fna	Salmonella_enterica	0.5217	73.961 KB	21	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGEJ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045858 SAMN37819900-rid19834043.denovo.002, whole genome shotgun sequence	145461..145898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGEJ010000133.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045858 SAMN37819900-rid19834043.guided.006, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGEJ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045858 SAMN37819900-rid19834043.denovo.015, whole genome shotgun sequence	14689..15331	enterobacteriales	IncFII(S)	100	262 / 262	DAQGEJ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045858 SAMN37819900-rid19834043.denovo.015, whole genome shotgun sequence	30416..30677																																																avrA	DAQGEJ010000006.1	105336..106205	99.885	870	0						
GCA_032744395.1_PDT001940282.1_genomic.fna	Salmonella_enterica	0.5204	198.83 KB	8	aroC_139,dnaN_174,hemD_68,hisD_132,purE_133,sucA_9,thrA_168	578	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_139	dnaN	100	100	dnaN_174	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_133	sucA	100	100	sucA_9	thrA	100	100	thrA_168	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQGEM010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00051132 SAMN37820140-rid19834023.denovo.08, whole genome shotgun sequence	52306..52743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQGEM010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00051132 SAMN37820140-rid19834023.guided.30, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	97.19	534 / 534	DAQGEM010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Havana isolate AUSMDU00051132 SAMN37820140-rid19834023.denovo.28, whole genome shotgun sequence	18035..18568																																																						avrA	DAQGEM010000005.1	138906..139775	99.195	870	0						
GCA_032744415.1_PDT001940233.1_genomic.fna	Salmonella_enterica	0.5214	91.015 KB	17	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGEK010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00032743 SAMN37819723-rid19829353.denovo.005, whole genome shotgun sequence	20219..20656	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQGEK010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00032743 SAMN37819723-rid19829353.guided.028, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGEK010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00032743 SAMN37819723-rid19829353.denovo.037, whole genome shotgun sequence	40535..41177	enterobacteriales	IncFII(S)	100	262 / 262	DAQGEK010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00032743 SAMN37819723-rid19829353.denovo.071, whole genome shotgun sequence	3419..3680																																																avrA	DAQGEK010000004.1	115327..116196	99.54	870	0						
GCA_032744455.1_PDT001940219.1_genomic.fna	Salmonella_enterica	0.5222	65.144 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGEL010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045331 SAMN37819823-rid19831313.denovo.019, whole genome shotgun sequence	11351..11788	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGEL010000153.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045331 SAMN37819823-rid19831313.guided.033, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGEL010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045331 SAMN37819823-rid19831313.denovo.010, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	DAQGEL010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045331 SAMN37819823-rid19831313.denovo.010, whole genome shotgun sequence	64139..64400		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQGEL010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045331 SAMN37819823-rid19831313.denovo.049, whole genome shotgun sequence	22488..22624																																									avrA	DAQGEL010000018.1	39625..40494	99.885	870	0						
GCA_032744555.1_PDT001941101.1_genomic.fna	Salmonella_enterica	0.5217	197.867 KB	8	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNWYA010000002.1 Salmonella enterica strain PNUSAS391822 SAMN37846084-rid19842513.denovo.02, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNWYA010000042.1 Salmonella enterica strain PNUSAS391822 SAMN37846084-rid19842513.guided.30, whole genome shotgun sequence	4920..5357	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNWYA010000006.1	39472..40341	99.77	870	0						
GCA_032745575.1_PDT001941076.1_genomic.fna	Salmonella_enterica	0.5215	693.336 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNWYD010000001.1 Salmonella enterica strain PNUSAS391714 SAMN37845415-rid19842383.denovo.01, whole genome shotgun sequence	684158..684595	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNWYD010000020.1 Salmonella enterica strain PNUSAS391714 SAMN37845415-rid19842383.guided.09, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWYD010000003.1	563792..564661	99.77	870	0						
GCA_032745615.1_PDT001941074.1_genomic.fna	Salmonella_enterica	0.5208	377.352 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A),dfrA5,dfrA5	0		4	Col156,IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWYF010000002.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.denovo.02, whole genome shotgun sequence	207386..207823	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	827/831	ABNWYF010000028.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.denovo.32, whole genome shotgun sequence	1..827	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABNWYF010000028.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.denovo.32, whole genome shotgun sequence	833..1636	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNWYF010000046.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.guided.17, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	829/831	ABNWYF010000049.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.guided.31, whole genome shotgun sequence	3587..4415	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABNWYF010000049.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.guided.31, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNWYF010000033.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.denovo.40, whole genome shotgun sequence	523..1383	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNWYF010000052.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.guided.39, whole genome shotgun sequence	486..1346	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNWYF010000028.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.denovo.32, whole genome shotgun sequence	1697..2512	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNWYF010000049.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.guided.31, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNWYF010000031.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.denovo.37, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWYF010000051.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.guided.36, whole genome shotgun sequence	1092..2291	Doxycycline, Tetracycline	AJ517790	dfrA5	100	474/474	ABNWYF010000029.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.denovo.34, whole genome shotgun sequence	98..571	Trimethoprim	X12868	dfrA5	100	474/474	ABNWYF010000050.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.guided.33, whole genome shotgun sequence	3716..4189	Trimethoprim	X12868																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col156	96.05	152 / 154	ABNWYF010000030.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.denovo.35, whole genome shotgun sequence	967..1118	enterobacteriales	IncFIB(S)	100	643 / 643	ABNWYF010000021.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.denovo.23, whole genome shotgun sequence	20150..20792		enterobacteriales	IncFII(S)	100	262 / 262	ABNWYF010000021.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.denovo.23, whole genome shotgun sequence	35877..36138		enterobacteriales	IncX1	99.2	374 / 374	ABNWYF010000025.1 Salmonella enterica strain PNUSAS391716 SAMN37845413-rid19842373.denovo.27, whole genome shotgun sequence	9953..10326																																		avrA	ABNWYF010000001.1	483596..484465	99.885	870	0						
GCA_032745835.1_PDT001940818.1_genomic.fna	Salmonella_enterica	0.5215	48.726 KB	30	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWYL010000067.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314549 SAMN37844033-rid19838613.denovo.067, whole genome shotgun sequence	14147..14584	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWYL010000147.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314549 SAMN37844033-rid19838613.denovo.151, whole genome shotgun sequence	106..942	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWYL010000147.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314549 SAMN37844033-rid19838613.denovo.151, whole genome shotgun sequence	942..1744	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWYL010000147.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314549 SAMN37844033-rid19838613.denovo.151, whole genome shotgun sequence	942..1745	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWYL010000147.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314549 SAMN37844033-rid19838613.denovo.151, whole genome shotgun sequence	942..1745	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWYL010000147.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314549 SAMN37844033-rid19838613.denovo.151, whole genome shotgun sequence	942..1745	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNWYL010000199.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314549 SAMN37844033-rid19838613.guided.083, whole genome shotgun sequence	7117..7554	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWYL010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314549 SAMN37844033-rid19838613.guided.149, whole genome shotgun sequence	1546..2382	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWYL010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314549 SAMN37844033-rid19838613.guided.149, whole genome shotgun sequence	744..1546	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWYL010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314549 SAMN37844033-rid19838613.guided.149, whole genome shotgun sequence	743..1546	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWYL010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314549 SAMN37844033-rid19838613.guided.149, whole genome shotgun sequence	743..1546	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWYL010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314549 SAMN37844033-rid19838613.guided.149, whole genome shotgun sequence	743..1546	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	100	373 / 373	ABNWYL010000105.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314549 SAMN37844033-rid19838613.denovo.108, whole genome shotgun sequence	1145..1517																																																						avrA	ABNWYL010000020.1	39484..40353	99.655	870	0						
GCA_032745895.1_PDT001940813.1_genomic.fna	Salmonella_enterica	0.5231	60.29 KB	23	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNWYM010000057.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314550 SAMN37844034-rid19838603.denovo.058, whole genome shotgun sequence	12478..12915	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWYM010000102.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314550 SAMN37844034-rid19838603.denovo.105, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWYM010000102.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314550 SAMN37844034-rid19838603.denovo.105, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWYM010000102.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314550 SAMN37844034-rid19838603.denovo.105, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWYM010000102.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314550 SAMN37844034-rid19838603.denovo.105, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWYM010000102.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314550 SAMN37844034-rid19838603.denovo.105, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNWYM010000132.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314550 SAMN37844034-rid19838603.guided.068, whole genome shotgun sequence	14103..14540	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWYM010000134.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314550 SAMN37844034-rid19838603.guided.108, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWYM010000134.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314550 SAMN37844034-rid19838603.guided.108, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWYM010000134.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314550 SAMN37844034-rid19838603.guided.108, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWYM010000134.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314550 SAMN37844034-rid19838603.guided.108, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWYM010000134.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314550 SAMN37844034-rid19838603.guided.108, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNWYM010000108.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314550 SAMN37844034-rid19838603.denovo.112, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNWYM010000135.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314550 SAMN37844034-rid19838603.guided.119, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNWYM010000110.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22314550 SAMN37844034-rid19838603.denovo.114, whole genome shotgun sequence	400..530																																																						avrA	ABNWYM010000010.1	61248..62117	99.655	870	0						
GCA_032746535.1_PDT001940546.1_genomic.fna	Salmonella_enterica	0.5217	196.065 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGFD010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -10 SAMN32778110-rid19839183.denovo.04, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.72	359/438	DAQGFD010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -10 SAMN32778110-rid19839183.guided.56, whole genome shotgun sequence	1..359	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGFD010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -10 SAMN32778110-rid19839183.denovo.21, whole genome shotgun sequence	48416..49058	enterobacteriales	IncFII(S)	100	262 / 262	DAQGFD010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -10 SAMN32778110-rid19839183.denovo.21, whole genome shotgun sequence	64143..64404																																																avrA	DAQGFD010000012.1	38150..39018	100	869	0						
GCA_032746615.1_PDT001940553.1_genomic.fna	Salmonella_enterica	0.5217	149.6 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGFC010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -4 SAMN32778104-rid19836453.denovo.03, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(S)	100	643 / 643	DAQGFC010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -4 SAMN32778104-rid19836453.denovo.15, whole genome shotgun sequence	48438..49080	enterobacteriales	IncFII(S)	100	262 / 262	DAQGFC010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -4 SAMN32778104-rid19836453.denovo.15, whole genome shotgun sequence	64165..64426																																																avrA	DAQGFC010000005.1	39988..40856	100	869	0						
GCA_032746635.1_PDT001940213.1_genomic.fna	Salmonella_enterica	0.5217	74.267 KB	22	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	0		4	IncFIB(S),IncFII(S),IncFII(pSE11),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGFH010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045379 SAMN37819828-rid19830383.denovo.029, whole genome shotgun sequence	12518..12955	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGFH010000129.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045379 SAMN37819828-rid19830383.guided.077, whole genome shotgun sequence	8192..8629	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQGFH010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045379 SAMN37819828-rid19830383.denovo.024, whole genome shotgun sequence	53149..54009	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQGFH010000131.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045379 SAMN37819828-rid19830383.guided.097, whole genome shotgun sequence	4074..4934	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	100	643 / 643	DAQGFH010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045379 SAMN37819828-rid19830383.denovo.016, whole genome shotgun sequence	43081..43723	enterobacteriales	IncFII(S)	100	262 / 262	DAQGFH010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045379 SAMN37819828-rid19830383.denovo.016, whole genome shotgun sequence	58808..59069		enterobacteriales	IncFII(pSE11)	94.72	265 / 264	DAQGFH010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045379 SAMN37819828-rid19830383.denovo.024, whole genome shotgun sequence	59690..59949		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQGFH010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045379 SAMN37819828-rid19830383.denovo.049, whole genome shotgun sequence	22446..22582																																		avrA	DAQGFH010000005.1	108070..108939	99.885	870	0						
GCA_032746735.1_PDT001940207.1_genomic.fna	Salmonella_enterica	0.5216	68.651 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGFI010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045406 SAMN37819834-rid19827973.denovo.021, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGFI010000128.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045406 SAMN37819834-rid19827973.guided.039, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQGFI010000105.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045406 SAMN37819834-rid19827973.denovo.108, whole genome shotgun sequence	965..1118	enterobacteriales	ColRNAI	90.08	131 / 130	DAQGFI010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045406 SAMN37819834-rid19827973.denovo.105, whole genome shotgun sequence	3981..4111		enterobacteriales	IncFIB(S)	100	643 / 643	DAQGFI010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045406 SAMN37819834-rid19827973.denovo.011, whole genome shotgun sequence	48417..49059		enterobacteriales	IncFII(S)	100	262 / 262	DAQGFI010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045406 SAMN37819834-rid19827973.denovo.011, whole genome shotgun sequence	64144..64405																																		avrA	DAQGFI010000004.1	61078..61947	99.885	870	0						
GCA_032746755.1_PDT001940209.1_genomic.fna	Salmonella_enterica	0.5212	171.315 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGFF010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045402 SAMN37819832-rid19835393.denovo.07, whole genome shotgun sequence	108771..109208	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQGFF010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045402 SAMN37819832-rid19835393.guided.38, whole genome shotgun sequence	19260..19697	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGFF010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045402 SAMN37819832-rid19835393.denovo.27, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQGFF010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00045402 SAMN37819832-rid19835393.denovo.46, whole genome shotgun sequence	3415..3676																																																avrA	DAQGFF010000006.1	140958..141827	99.54	870	0						
GCA_032747635.1_PDT001940199.1_genomic.fna	Salmonella_enterica	0.5202	168.243 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGFJ010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022539 SAMN37819550-rid19835383.denovo.04, whole genome shotgun sequence	62339..62776	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQGFJ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022539 SAMN37819550-rid19835383.guided.22, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	DAQGFJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022539 SAMN37819550-rid19835383.denovo.31, whole genome shotgun sequence	5285..6145	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQGFJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022539 SAMN37819550-rid19835383.denovo.31, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQGFJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022539 SAMN37819550-rid19835383.denovo.31, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQGFJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022539 SAMN37819550-rid19835383.denovo.31, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQGFJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022539 SAMN37819550-rid19835383.denovo.31, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	DAQGFJ010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022539 SAMN37819550-rid19835383.guided.44, whole genome shotgun sequence	3945..4805	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQGFJ010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022539 SAMN37819550-rid19835383.guided.44, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQGFJ010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022539 SAMN37819550-rid19835383.guided.44, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQGFJ010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022539 SAMN37819550-rid19835383.guided.44, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQGFJ010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022539 SAMN37819550-rid19835383.guided.44, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGFJ010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022539 SAMN37819550-rid19835383.denovo.28, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	DAQGFJ010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022539 SAMN37819550-rid19835383.denovo.28, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.66	374 / 374	DAQGFJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022539 SAMN37819550-rid19835383.denovo.31, whole genome shotgun sequence	11911..12284																																									avrA	DAQGFJ010000006.1	140720..141589	99.54	870	0						
GCA_032747655.1_PDT001940134.1_genomic.fna	Salmonella_enterica	0.5212	117.507 KB	15	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncFII(pCTU2),pESA2	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGFO010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00024835 SAMN37819586-rid19835373.denovo.42, whole genome shotgun sequence	20191..20628	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQGFO010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00024835 SAMN37819586-rid19835373.guided.47, whole genome shotgun sequence	9267..9704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGFO010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00024835 SAMN37819586-rid19835373.denovo.35, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQGFO010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00024835 SAMN37819586-rid19835373.denovo.59, whole genome shotgun sequence	3420..3681		enterobacteriales	IncFII(pCTU2)	97.23	577 / 577	DAQGFO010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00024835 SAMN37819586-rid19835373.denovo.52, whole genome shotgun sequence	4742..5318		enterobacteriales	pESA2	98.4	750 / 750	DAQGFO010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00024835 SAMN37819586-rid19835373.denovo.52, whole genome shotgun sequence	21137..21886																																		avrA	DAQGFO010000003.1	115366..116235	99.54	870	0						
GCA_032747695.1_PDT001940146.1_genomic.fna	Salmonella_enterica	0.5218	141.889 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGFL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048413 SAMN37820062-rid19829333.denovo.001, whole genome shotgun sequence	145229..145666	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGFL010000126.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048413 SAMN37820062-rid19829333.guided.057, whole genome shotgun sequence	3439..3876	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGFL010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048413 SAMN37820062-rid19829333.denovo.016, whole genome shotgun sequence	48413..49055	enterobacteriales	IncFII(S)	100	262 / 262	DAQGFL010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048413 SAMN37820062-rid19829333.denovo.016, whole genome shotgun sequence	64140..64401																																																avrA	DAQGFL010000006.1	39625..40494	99.885	870	0						
GCA_032747715.1_PDT001940205.1_genomic.fna	Salmonella_enterica	0.5217	82.665 KB	17	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGFK010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045409 SAMN37819836-rid19833993.denovo.020, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGFK010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045409 SAMN37819836-rid19833993.guided.032, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQGFK010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045409 SAMN37819836-rid19833993.denovo.105, whole genome shotgun sequence	965..1118	enterobacteriales	ColRNAI	90.08	131 / 130	DAQGFK010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045409 SAMN37819836-rid19833993.denovo.100, whole genome shotgun sequence	3981..4111		enterobacteriales	IncFIB(S)	100	643 / 643	DAQGFK010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045409 SAMN37819836-rid19833993.denovo.013, whole genome shotgun sequence	48417..49059		enterobacteriales	IncFII(S)	100	262 / 262	DAQGFK010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045409 SAMN37819836-rid19833993.denovo.013, whole genome shotgun sequence	64144..64405																																		avrA	DAQGFK010000008.1	43846..44715	99.885	870	0						
GCA_032747745.1_PDT001940138.1_genomic.fna	Salmonella_enterica	0.5218	66.457 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGFM010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048565 SAMN37820069-rid19833983.denovo.025, whole genome shotgun sequence	12524..12961	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGFM010000156.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048565 SAMN37820069-rid19833983.guided.085, whole genome shotgun sequence	2271..2708	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGFM010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048565 SAMN37820069-rid19833983.denovo.013, whole genome shotgun sequence	43113..43755	enterobacteriales	IncFII(S)	100	262 / 262	DAQGFM010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048565 SAMN37820069-rid19833983.denovo.013, whole genome shotgun sequence	58840..59101																																																avrA	DAQGFM010000026.1	60943..61812	99.885	870	0						
GCA_032747835.1_PDT001940126.1_genomic.fna	Salmonella_enterica	0.5212	135.76 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGFP010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025284 SAMN37819593-rid19830343.denovo.35, whole genome shotgun sequence	20206..20643	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQGFP010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025284 SAMN37819593-rid19830343.guided.42, whole genome shotgun sequence	15541..15978	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGFP010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025284 SAMN37819593-rid19830343.denovo.32, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	DAQGFP010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025284 SAMN37819593-rid19830343.denovo.52, whole genome shotgun sequence	3412..3673																																																avrA	DAQGFP010000005.1	140715..141584	99.54	870	0						
GCA_032747875.1_PDT001940128.1_genomic.fna	Salmonella_enterica	0.5224	113.018 KB	15	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQGFN010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00025201 SAMN37819591-rid19833973.denovo.10, whole genome shotgun sequence	89200..89637	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQGFN010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00025201 SAMN37819591-rid19833973.guided.54, whole genome shotgun sequence	10146..10583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQGFN010000014.1	123994..124863	99.77	870	0						
GCA_032747915.1_PDT001940124.1_genomic.fna	Salmonella_enterica	0.5212	165.763 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGFQ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025326 SAMN37819595-rid19832613.denovo.02, whole genome shotgun sequence	106349..106786	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQGFQ010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025326 SAMN37819595-rid19832613.guided.40, whole genome shotgun sequence	9267..9704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQGFQ010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025326 SAMN37819595-rid19832613.denovo.55, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGFQ010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025326 SAMN37819595-rid19832613.denovo.26, whole genome shotgun sequence	40527..41169		enterobacteriales	IncFII(S)	100	262 / 262	DAQGFQ010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00025326 SAMN37819595-rid19832613.denovo.26, whole genome shotgun sequence	55552..55813																																									avrA	DAQGFQ010000004.1	140751..141620	99.54	870	0						
GCA_032747935.1_PDT001940077.1_genomic.fna	Salmonella_enterica	0.5209	99.849 KB	15	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQGFR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027805 SAMN37819636-rid19831303.denovo.01, whole genome shotgun sequence	382136..382573	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQGFR010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00027805 SAMN37819636-rid19831303.guided.54, whole genome shotgun sequence	9246..9683	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQGFR010000011.1	123989..124858	99.77	870	0						
GCA_032747975.1_PDT001940059.1_genomic.fna	Salmonella_enterica	0.5217	171.358 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQGFS010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00036876 SAMN37819738-rid19830333.denovo.03, whole genome shotgun sequence	313782..314219	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQGFS010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00036876 SAMN37819738-rid19830333.guided.28, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQGFS010000004.1	124014..124883	99.77	870	0						
GCA_032748035.1_PDT001940057.1_genomic.fna	Salmonella_enterica	0.5209	98.49 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGFU010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00037001 SAMN37819740-rid19835363.denovo.06, whole genome shotgun sequence	17256..17693	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQGFU010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00037001 SAMN37819740-rid19835363.guided.49, whole genome shotgun sequence	15524..15961	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	DAQGFU010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00037001 SAMN37819740-rid19835363.denovo.68, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQGFU010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00037001 SAMN37819740-rid19835363.guided.67, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGFU010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00037001 SAMN37819740-rid19835363.denovo.31, whole genome shotgun sequence	48111..48753	enterobacteriales	IncFII(S)	100	262 / 262	DAQGFU010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00037001 SAMN37819740-rid19835363.denovo.31, whole genome shotgun sequence	3859..4120		enterobacteriales	IncX1	95.76	377 / 377	DAQGFU010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00037001 SAMN37819740-rid19835363.denovo.40, whole genome shotgun sequence	4749..5125																																									avrA	DAQGFU010000010.1	140958..141827	99.54	870	0						
GCA_032748055.1_PDT001940051.1_genomic.fna	Salmonella_enterica	0.5218	124.884 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQGFT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00038008 SAMN37819746-rid19833953.denovo.01, whole genome shotgun sequence	302060..302497	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQGFT010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00038008 SAMN37819746-rid19833953.guided.16, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQGFT010000003.1	123997..124866	99.655	870	0						
GCA_032748095.1_PDT001940047.1_genomic.fna	Salmonella_enterica	0.5203	227.763 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col(pHAD28),IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGFV010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038045 SAMN37819749-rid19835353.denovo.04, whole genome shotgun sequence	52301..52738	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQGFV010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038045 SAMN37819749-rid19835353.guided.25, whole genome shotgun sequence	24989..25426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQGFV010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038045 SAMN37819749-rid19835353.denovo.45, whole genome shotgun sequence	2283..2413	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGFV010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038045 SAMN37819749-rid19835353.denovo.29, whole genome shotgun sequence	40532..41174		enterobacteriales	IncFII(S)	100	262 / 262	DAQGFV010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038045 SAMN37819749-rid19835353.denovo.38, whole genome shotgun sequence	3421..3682		enterobacteriales	IncX1	95.76	377 / 377	DAQGFV010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038045 SAMN37819749-rid19835353.denovo.30, whole genome shotgun sequence	34215..34591																																		avrA	DAQGFV010000013.1	140958..141827	99.54	870	0						
GCA_032748115.1_PDT001940045.1_genomic.fna	Salmonella_enterica	0.5213	126.627 KB	14	aroC_454,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	1925	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_454	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGFX010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038270 SAMN37819751-rid19827933.denovo.04, whole genome shotgun sequence	36868..37305	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQGFX010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038270 SAMN37819751-rid19827933.guided.41, whole genome shotgun sequence	9811..10248	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGFX010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038270 SAMN37819751-rid19827933.denovo.35, whole genome shotgun sequence	48112..48754	enterobacteriales	IncFII(S)	100	262 / 262	DAQGFX010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038270 SAMN37819751-rid19827933.denovo.35, whole genome shotgun sequence	3859..4120																																																avrA	DAQGFX010000012.1	43550..44419	99.54	870	0						
GCA_032748175.1_PDT001939992.1_genomic.fna	Salmonella_enterica	0.5223	82.872 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGFW010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046616 SAMN37819972-rid19831283.denovo.002, whole genome shotgun sequence	15551..15988	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGFW010000124.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046616 SAMN37819972-rid19831283.guided.054, whole genome shotgun sequence	15092..15529	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGFW010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046616 SAMN37819972-rid19831283.denovo.013, whole genome shotgun sequence	44669..45311	enterobacteriales	IncFII(S)	100	262 / 262	DAQGFW010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046616 SAMN37819972-rid19831283.denovo.013, whole genome shotgun sequence	60396..60657																																																avrA	DAQGFW010000007.1	99993..100862	99.885	870	0						
GCA_032748195.1_PDT001939986.1_genomic.fna	Salmonella_enterica	0.5216	215.981 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	11	aac(6')-Iaa,aadA2,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aadA2,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-1B,blaTEM-1B,mph(A),mph(A),sul1,sul2,sul1,sul2,tet(A),tet(A),dfrA12,dfrA12	1	gyrA_p.D87Y	4	Col(pHAD28),IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGFY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.denovo.01, whole genome shotgun sequence	162471..162908	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	DAQGFY010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.denovo.50, whole genome shotgun sequence	3371..4162	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	831/831	DAQGFY010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.denovo.64, whole genome shotgun sequence	86..916	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQGFY010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.denovo.64, whole genome shotgun sequence	922..1725	Streptomycin	AF321551	aph(3')-Ia	100	816/816	DAQGFY010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.denovo.70, whole genome shotgun sequence	135..950	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	V00359	aac(6')-Iaa	96.35	438/438	DAQGFY010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.guided.42, whole genome shotgun sequence	1958..2395	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	DAQGFY010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.guided.49, whole genome shotgun sequence	2896..3687	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	831/831	DAQGFY010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.guided.63, whole genome shotgun sequence	842..1672	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQGFY010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.guided.63, whole genome shotgun sequence	33..836	Streptomycin	AF321551	aph(3')-Ia	100	816/816	DAQGFY010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.guided.68, whole genome shotgun sequence	122..937	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	V00359	blaTEM-1B	100	861/861	DAQGFY010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.denovo.54, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQGFY010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.guided.56, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	DAQGFY010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.denovo.62, whole genome shotgun sequence	1956..2861	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	DAQGFY010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.guided.61, whole genome shotgun sequence	110..1015	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	sul1	100	840/840	DAQGFY010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.denovo.50, whole genome shotgun sequence	2027..2866	Sulfamethoxazole	U12338	sul2	100	816/816	DAQGFY010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.denovo.67, whole genome shotgun sequence	28..843	Sulfamethoxazole	AY034138	sul1	100	840/840	DAQGFY010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.guided.49, whole genome shotgun sequence	4192..5031	Sulfamethoxazole	U12338	sul2	100	816/816	DAQGFY010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.guided.66, whole genome shotgun sequence	326..1141	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	DAQGFY010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.denovo.60, whole genome shotgun sequence	947..2146	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQGFY010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.guided.59, whole genome shotgun sequence	988..2187	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	DAQGFY010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.denovo.50, whole genome shotgun sequence	4570..5067	Trimethoprim	AM040708	dfrA12	100	498/498	DAQGFY010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.guided.49, whole genome shotgun sequence	1991..2488	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQGFY010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.denovo.53, whole genome shotgun sequence	1164..1294	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGFY010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.denovo.29, whole genome shotgun sequence	32997..33639		enterobacteriales	IncFII(S)	100	262 / 262	DAQGFY010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.denovo.47, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	95.76	377 / 377	DAQGFY010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022712 SAMN37819555-rid19833933.denovo.41, whole genome shotgun sequence	9178..9554																																		avrA	DAQGFY010000007.1	140720..141589	99.54	870	0						
GCA_032748235.1_PDT001939980.1_genomic.fna	Salmonella_enterica	0.5211	137.681 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGFZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046741 SAMN37819983-rid19835333.denovo.01, whole genome shotgun sequence	55685..56122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGFZ010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046741 SAMN37819983-rid19835333.guided.17, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGFZ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046741 SAMN37819983-rid19835333.denovo.18, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQGFZ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046741 SAMN37819983-rid19835333.denovo.18, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQGFZ010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046741 SAMN37819983-rid19835333.denovo.21, whole genome shotgun sequence	15827..15963																																									avrA	DAQGFZ010000005.1	122891..123760	99.885	870	0						
GCA_032748295.1_PDT001939970.1_genomic.fna	Salmonella_enterica	0.5217	88.494 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGGB010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048639 SAMN37820078-rid19835323.denovo.010, whole genome shotgun sequence	104628..105065	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGGB010000112.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048639 SAMN37820078-rid19835323.guided.063, whole genome shotgun sequence	11144..11581	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGGB010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048639 SAMN37820078-rid19835323.denovo.015, whole genome shotgun sequence	48426..49068	enterobacteriales	IncFII(S)	100	262 / 262	DAQGGB010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048639 SAMN37820078-rid19835323.denovo.015, whole genome shotgun sequence	64153..64414																																																avrA	DAQGGB010000014.1	60943..61812	99.885	870	0						
GCA_032748315.1_PDT001939976.1_genomic.fna	Salmonella_enterica	0.5227	52.779 KB	28	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGGA010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048575 SAMN37820073-rid19833923.denovo.070, whole genome shotgun sequence	12504..12941	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGGA010000165.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048575 SAMN37820073-rid19833923.guided.127, whole genome shotgun sequence	2211..2648	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGGA010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048575 SAMN37820073-rid19833923.denovo.008, whole genome shotgun sequence	48407..49049	enterobacteriales	IncFII(S)	100	262 / 262	DAQGGA010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00048575 SAMN37820073-rid19833923.denovo.008, whole genome shotgun sequence	64134..64395																																																avrA	DAQGGA010000041.1	39625..40494	99.885	870	0						
GCA_032748335.1_PDT001939905.1_genomic.fna	Salmonella_enterica	0.5206	196.126 KB	7	aroC_454,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	1925	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_454	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGGC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040149 SAMN37819762-rid19835313.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQGGC010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040149 SAMN37819762-rid19835313.guided.30, whole genome shotgun sequence	10146..10583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGGC010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040149 SAMN37819762-rid19835313.denovo.28, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	DAQGGC010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040149 SAMN37819762-rid19835313.denovo.42, whole genome shotgun sequence	3422..3683		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQGGC010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040149 SAMN37819762-rid19835313.denovo.16, whole genome shotgun sequence	15605..15746																																									avrA	DAQGGC010000005.1	115362..116231	99.54	870	0						
GCA_032748355.1_PDT001939899.1_genomic.fna	Salmonella_enterica	0.5205	238.829 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGGE010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022118 SAMN37819534-rid19835303.denovo.03, whole genome shotgun sequence	151159..151596	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQGGE010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022118 SAMN37819534-rid19835303.denovo.33, whole genome shotgun sequence	13058..13888	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQGGE010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022118 SAMN37819534-rid19835303.denovo.33, whole genome shotgun sequence	13894..14697	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	DAQGGE010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022118 SAMN37819534-rid19835303.guided.25, whole genome shotgun sequence	15525..15962	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	DAQGGE010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022118 SAMN37819534-rid19835303.guided.44, whole genome shotgun sequence	3795..4625	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	DAQGGE010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022118 SAMN37819534-rid19835303.guided.44, whole genome shotgun sequence	2986..3789	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQGGE010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022118 SAMN37819534-rid19835303.denovo.33, whole genome shotgun sequence	11477..12337	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQGGE010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022118 SAMN37819534-rid19835303.guided.47, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	DAQGGE010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022118 SAMN37819534-rid19835303.denovo.33, whole genome shotgun sequence	14758..15573	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQGGE010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022118 SAMN37819534-rid19835303.guided.44, whole genome shotgun sequence	2110..2925	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGGE010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022118 SAMN37819534-rid19835303.denovo.30, whole genome shotgun sequence	32997..33639	enterobacteriales	IncFII(S)	100	262 / 262	DAQGGE010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022118 SAMN37819534-rid19835303.denovo.42, whole genome shotgun sequence	3407..3668		enterobacteriales	IncX1	95.76	377 / 377	DAQGGE010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00022118 SAMN37819534-rid19835303.denovo.33, whole genome shotgun sequence	25862..26238																																									avrA	DAQGGE010000008.1	88545..89414	99.54	870	0						
GCA_032748375.1_PDT001939844.1_genomic.fna	Salmonella_enterica	0.5213	94.389 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col(pHAD28),IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGGD010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046760 SAMN37819990-rid19832573.denovo.04, whole genome shotgun sequence	134033..134470	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGGD010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046760 SAMN37819990-rid19832573.guided.27, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	90.84	131 / 131	DAQGGD010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046760 SAMN37819990-rid19832573.denovo.78, whole genome shotgun sequence	188..318	enterobacteriales	IncFIB(S)	100	643 / 643	DAQGGD010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046760 SAMN37819990-rid19832573.denovo.14, whole genome shotgun sequence	14681..15323		enterobacteriales	IncFII(S)	100	262 / 262	DAQGGD010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046760 SAMN37819990-rid19832573.denovo.14, whole genome shotgun sequence	30408..30669		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQGGD010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046760 SAMN37819990-rid19832573.denovo.15, whole genome shotgun sequence	85886..86027																																		avrA	DAQGGD010000005.1	108305..109174	99.885	870	0						
GCA_032748395.1_PDT001939824.1_genomic.fna	Salmonella_enterica	0.5205	82.345 KB	19	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQGGG010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00022930 SAMN37819558-rid19833893.denovo.036, whole genome shotgun sequence	14137..14574	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQGGG010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00022930 SAMN37819558-rid19833893.guided.050, whole genome shotgun sequence	14161..14598	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	DAQGGG010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00022930 SAMN37819558-rid19833893.denovo.003, whole genome shotgun sequence	166467..166889	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQGGG010000113.1 TPA_asm: Salmonella enterica subsp. enterica serovar Heidelberg isolate AUSMDU00022930 SAMN37819558-rid19833893.guided.043, whole genome shotgun sequence	39346..39768	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQGGG010000013.1	24896..25765	99.54	870	0						
GCA_032748415.1_PDT001939828.1_genomic.fna	Salmonella_enterica	0.5217	137.589 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGGF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046916 SAMN37820005-rid19832563.denovo.01, whole genome shotgun sequence	145229..145666	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGGF010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046916 SAMN37820005-rid19832563.guided.62, whole genome shotgun sequence	8785..9222	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGGF010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046916 SAMN37820005-rid19832563.denovo.25, whole genome shotgun sequence	48423..49065	enterobacteriales	IncFII(S)	100	262 / 262	DAQGGF010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046916 SAMN37820005-rid19832563.denovo.25, whole genome shotgun sequence	64150..64411		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQGGF010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046916 SAMN37820005-rid19832563.denovo.19, whole genome shotgun sequence	18524..18665																																									avrA	DAQGGF010000007.1	61091..61960	99.885	870	0						
GCA_032748435.1_PDT001939818.1_genomic.fna	Salmonella_enterica	0.5222	86.832 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGGH010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049065 SAMN37820100-rid19832553.denovo.055, whole genome shotgun sequence	12491..12928	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGGH010000112.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049065 SAMN37820100-rid19832553.guided.043, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGGH010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049065 SAMN37820100-rid19832553.denovo.017, whole genome shotgun sequence	48413..49055	enterobacteriales	IncFII(S)	100	262 / 262	DAQGGH010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049065 SAMN37820100-rid19832553.denovo.017, whole genome shotgun sequence	64140..64401																																																avrA	DAQGGH010000012.1	39625..40494	99.885	870	0						
GCA_032748455.1_PDT001939814.1_genomic.fna	Salmonella_enterica	0.5211	142.605 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGGJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049085 SAMN37820104-rid19833883.denovo.01, whole genome shotgun sequence	206854..207291	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGGJ010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049085 SAMN37820104-rid19833883.guided.39, whole genome shotgun sequence	22078..22515	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQGGJ010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049085 SAMN37820104-rid19833883.denovo.67, whole genome shotgun sequence	965..1118	enterobacteriales	ColRNAI	90.08	131 / 130	DAQGGJ010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049085 SAMN37820104-rid19833883.denovo.63, whole genome shotgun sequence	3981..4111		enterobacteriales	IncFIB(S)	100	643 / 643	DAQGGJ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049085 SAMN37820104-rid19833883.denovo.17, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	DAQGGJ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049085 SAMN37820104-rid19833883.denovo.17, whole genome shotgun sequence	30407..30668																																		avrA	DAQGGJ010000003.1	122858..123727	99.885	870	0						
GCA_032748475.1_PDT001939816.1_genomic.fna	Salmonella_enterica	0.5219	123.467 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGGI010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049083 SAMN37820102-rid19827843.denovo.03, whole genome shotgun sequence	56336..56773	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGGI010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049083 SAMN37820102-rid19827843.guided.47, whole genome shotgun sequence	15797..16234	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGGI010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049083 SAMN37820102-rid19827843.denovo.20, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQGGI010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049083 SAMN37820102-rid19827843.denovo.20, whole genome shotgun sequence	60371..60632																																																avrA	DAQGGI010000013.1	39625..40494	99.885	870	0						
GCA_032748495.1_PDT001930755.1_genomic.fna	Salmonella_enterica	0.522	79.446 KB	20	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	-:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	-	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:l,z13:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNWYO010000015.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314532 SAMN37810046-rid19744243.denovo.015, whole genome shotgun sequence	13124..13561	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWYO010000080.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314532 SAMN37810046-rid19744243.denovo.082, whole genome shotgun sequence	5947..6783	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNWYO010000080.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314532 SAMN37810046-rid19744243.denovo.082, whole genome shotgun sequence	4916..5729	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	V00359	aph(3'')-Ib	100	804/804	ABNWYO010000080.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314532 SAMN37810046-rid19744243.denovo.082, whole genome shotgun sequence	6783..7586	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNWYO010000116.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314532 SAMN37810046-rid19744243.guided.032, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWYO010000119.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314532 SAMN37810046-rid19744243.guided.084, whole genome shotgun sequence	3915..4751	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNWYO010000119.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314532 SAMN37810046-rid19744243.guided.084, whole genome shotgun sequence	4969..5782	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	V00359	aph(3'')-Ib	100	804/804	ABNWYO010000119.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314532 SAMN37810046-rid19744243.guided.084, whole genome shotgun sequence	3112..3915	Streptomycin	AF321551	sul2	99.88	816/816	ABNWYO010000038.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314532 SAMN37810046-rid19744243.denovo.039, whole genome shotgun sequence	44687..45502	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNWYO010000121.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314532 SAMN37810046-rid19744243.guided.106, whole genome shotgun sequence	22..837	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNWYO010000086.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314532 SAMN37810046-rid19744243.denovo.091, whole genome shotgun sequence	1194..2399	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNWYO010000120.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314532 SAMN37810046-rid19744243.guided.090, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWYO010000009.1	102583..103451	99.655	869	0						
GCA_032748755.1_PDT001814992.1_genomic.fna	Salmonella_enterica	0.52	387.159 KB	6	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNWYY010000001.1 Salmonella enterica strain PNUSAS362166 SAMN36405424-rid18773773.denovo.01, whole genome shotgun sequence	600448..600885	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNWYY010000066.1 Salmonella enterica strain PNUSAS362166 SAMN36405424-rid18773773.guided.12, whole genome shotgun sequence	29689..30126	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNWYY010000022.1 Salmonella enterica strain PNUSAS362166 SAMN36405424-rid18773773.denovo.24, whole genome shotgun sequence	19753..20395	enterobacteriales	IncFII(pMET)	90.41	584 / 577	ABNWYY010000024.1 Salmonella enterica strain PNUSAS362166 SAMN36405424-rid18773773.denovo.26, whole genome shotgun sequence	18874..19456																																																avrA	ABNWYY010000004.1	153902..154770	99.31	870	0						
GCA_032748815.1_PDT001814523.1_genomic.fna	Salmonella_enterica	0.5223	103.827 KB	13	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNWYV010000016.1 Salmonella enterica strain PNUSAS362086 SAMN36393805-rid18770653.denovo.16, whole genome shotgun sequence	59223..59660	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNWYV010000071.1 Salmonella enterica strain PNUSAS362086 SAMN36393805-rid18770653.guided.59, whole genome shotgun sequence	3522..3959	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABNWYV010000016.1 Salmonella enterica strain PNUSAS362086 SAMN36393805-rid18770653.denovo.16, whole genome shotgun sequence	26921..27180																																																																	
GCA_032748855.1_PDT001814233.1_genomic.fna	Salmonella_enterica	0.5223	144.515 KB	12	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWYX010000038.1 Salmonella enterica strain PNUSAS362017 SAMN36387230-rid18768643.denovo.38, whole genome shotgun sequence	12516..12953	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWYX010000072.1 Salmonella enterica strain PNUSAS362017 SAMN36387230-rid18768643.guided.48, whole genome shotgun sequence	6424..6861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032748895.1_PDT001814379.1_genomic.fna	Salmonella_enterica	0.5214	363.788 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNWYW010000001.1 Salmonella enterica strain PNUSAS361885 SAMN36383033-rid18769383.denovo.01, whole genome shotgun sequence	562497..562934	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNWYW010000034.1 Salmonella enterica strain PNUSAS361885 SAMN36383033-rid18769383.guided.24, whole genome shotgun sequence	13372..13809	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWYW010000009.1	140025..140893	99.195	870	0						
GCA_032748915.1_PDT001814007.1_genomic.fna	Salmonella_enterica	0.5212	401.349 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWZA010000001.1 Salmonella enterica strain PNUSAS361826 SAMN36383933-rid18765553.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWZA010000034.1 Salmonella enterica strain PNUSAS361826 SAMN36383933-rid18765553.guided.24, whole genome shotgun sequence	9430..9867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABNWZA010000026.1 Salmonella enterica strain PNUSAS361826 SAMN36383933-rid18765553.denovo.29, whole genome shotgun sequence	3010..3140	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWZA010000023.1 Salmonella enterica strain PNUSAS361826 SAMN36383933-rid18765553.denovo.25, whole genome shotgun sequence	6806..7448		enterobacteriales	IncFII(S)	100	262 / 262	ABNWZA010000025.1 Salmonella enterica strain PNUSAS361826 SAMN36383933-rid18765553.denovo.28, whole genome shotgun sequence	3394..3655																																									avrA	ABNWZA010000008.1	174845..175714	99.54	870	0						
GCA_032748935.1_PDT001813701.1_genomic.fna	Salmonella_enterica	0.5183	69.257 KB	24	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWZB010000013.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313461 SAMN36376850-rid18761133.denovo.013, whole genome shotgun sequence	76146..76583	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWZB010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313461 SAMN36376850-rid18761133.denovo.076, whole genome shotgun sequence	14956..15792	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWZB010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313461 SAMN36376850-rid18761133.denovo.076, whole genome shotgun sequence	15792..16594	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWZB010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313461 SAMN36376850-rid18761133.denovo.076, whole genome shotgun sequence	15792..16595	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWZB010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313461 SAMN36376850-rid18761133.denovo.076, whole genome shotgun sequence	15792..16595	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWZB010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313461 SAMN36376850-rid18761133.denovo.076, whole genome shotgun sequence	15792..16595	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNWZB010000180.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313461 SAMN36376850-rid18761133.guided.071, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWZB010000182.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313461 SAMN36376850-rid18761133.guided.105, whole genome shotgun sequence	3999..4835	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNWZB010000182.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313461 SAMN36376850-rid18761133.guided.105, whole genome shotgun sequence	3197..3999	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNWZB010000182.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313461 SAMN36376850-rid18761133.guided.105, whole genome shotgun sequence	3196..3999	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNWZB010000182.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313461 SAMN36376850-rid18761133.guided.105, whole genome shotgun sequence	3196..3999	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNWZB010000182.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313461 SAMN36376850-rid18761133.guided.105, whole genome shotgun sequence	3196..3999	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNWZB010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313461 SAMN36376850-rid18761133.denovo.082, whole genome shotgun sequence	2692..3018	enterobacteriales	IncHI2A	99.52	630 / 630	ABNWZB010000106.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313461 SAMN36376850-rid18761133.denovo.110, whole genome shotgun sequence	1569..2198		enterobacteriales	IncX1	100	373 / 373	ABNWZB010000139.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313461 SAMN36376850-rid18761133.denovo.143, whole genome shotgun sequence	1126..1498																																									avrA	ABNWZB010000039.1	39484..40353	99.655	870	0						
GCA_032748975.1_PDT001811635.1_genomic.fna	Salmonella_enterica	0.5209	365.522 KB	5	aroC_13,dnaN_127,hemD_506,hisD_113,purE_114,sucA_107,thrA_4	3095	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_506	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNWZE010000001.1 Salmonella enterica strain PNUSAS361493 SAMN36357067-rid18744003.denovo.01, whole genome shotgun sequence	498131..498568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNWZE010000030.1 Salmonella enterica strain PNUSAS361493 SAMN36357067-rid18744003.guided.20, whole genome shotgun sequence	8822..9259	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWZE010000011.1	94271..95140	99.425	870	0						
GCA_032748985.1_PDT001811632.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWZF010000001.1 Salmonella enterica strain PNUSAS361461 SAMN36354950-rid18743973.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWZF010000028.1 Salmonella enterica strain PNUSAS361461 SAMN36354950-rid18743973.guided.21, whole genome shotgun sequence	10855..11292	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWZF010000018.1 Salmonella enterica strain PNUSAS361461 SAMN36354950-rid18743973.denovo.20, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNWZF010000019.1 Salmonella enterica strain PNUSAS361461 SAMN36354950-rid18743973.denovo.22, whole genome shotgun sequence	3403..3664																																																avrA	ABNWZF010000002.1	553654..554523	99.54	870	0						
GCA_032749035.1_PDT001811616.1_genomic.fna	Salmonella_enterica	0.5212	406.355 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWZC010000001.1 Salmonella enterica strain PNUSAS361503 SAMN36357064-rid18743813.denovo.01, whole genome shotgun sequence	898858..899295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWZC010000028.1 Salmonella enterica strain PNUSAS361503 SAMN36357064-rid18743813.guided.24, whole genome shotgun sequence	2321..2758	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	ABNWZC010000015.1 Salmonella enterica strain PNUSAS361503 SAMN36357064-rid18743813.denovo.15, whole genome shotgun sequence	7254..8114	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNWZC010000015.1 Salmonella enterica strain PNUSAS361503 SAMN36357064-rid18743813.denovo.15, whole genome shotgun sequence	7254..8114	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNWZC010000015.1 Salmonella enterica strain PNUSAS361503 SAMN36357064-rid18743813.denovo.15, whole genome shotgun sequence	7254..8114	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNWZC010000015.1 Salmonella enterica strain PNUSAS361503 SAMN36357064-rid18743813.denovo.15, whole genome shotgun sequence	7254..8114	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNWZC010000015.1 Salmonella enterica strain PNUSAS361503 SAMN36357064-rid18743813.denovo.15, whole genome shotgun sequence	7254..8114	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	ABNWZC010000027.1 Salmonella enterica strain PNUSAS361503 SAMN36357064-rid18743813.guided.22, whole genome shotgun sequence	1510..2370	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNWZC010000027.1 Salmonella enterica strain PNUSAS361503 SAMN36357064-rid18743813.guided.22, whole genome shotgun sequence	1510..2370	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNWZC010000027.1 Salmonella enterica strain PNUSAS361503 SAMN36357064-rid18743813.guided.22, whole genome shotgun sequence	1510..2370	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNWZC010000027.1 Salmonella enterica strain PNUSAS361503 SAMN36357064-rid18743813.guided.22, whole genome shotgun sequence	1510..2370	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNWZC010000027.1 Salmonella enterica strain PNUSAS361503 SAMN36357064-rid18743813.guided.22, whole genome shotgun sequence	1510..2370	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWZC010000018.1 Salmonella enterica strain PNUSAS361503 SAMN36357064-rid18743813.denovo.18, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABNWZC010000019.1 Salmonella enterica strain PNUSAS361503 SAMN36357064-rid18743813.denovo.21, whole genome shotgun sequence	3436..3697																																																avrA	ABNWZC010000002.1	553266..554135	99.54	870	0						
GCA_032749055.1_PDT001811154.1_genomic.fna	Salmonella_enterica	0.5223	672.487 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_603	2783	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_603	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNWZH010000002.1 Salmonella enterica strain PNUSAS361416 SAMN36356432-rid18741003.denovo.02, whole genome shotgun sequence	663592..664029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNWZH010000021.1 Salmonella enterica strain PNUSAS361416 SAMN36356432-rid18741003.guided.12, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNWZH010000003.1	499544..500413	99.54	870	0						
GCA_032749335.1_PDT001941077.1_genomic.fna	Salmonella_enterica	0.5185	279.769 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	17	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aph(3')-Ia,blaCTX-M-55,blaTEM-1B,blaLAP-2,blaCTX-M-55,blaLAP-2,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrB19,qnrS1,qnrB19,sul3,sul2,sul2,sul3,tet(B),tet(B)	0		5	Col(pHAD28),Col440I,Col440I,IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNWZT010000001.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWZT010000040.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.45, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNWZT010000040.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.45, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNWZT010000044.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.52, whole genome shotgun sequence	263..1123	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNWZT010000049.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.63, whole genome shotgun sequence	944..1735	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABNWZT010000051.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.67, whole genome shotgun sequence	239..1054	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	EF015636	aac(6')-Iaa	100	438/438	ABNWZT010000062.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.30, whole genome shotgun sequence	13954..14391	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNWZT010000065.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.43, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNWZT010000065.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.43, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABNWZT010000069.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.53, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABNWZT010000074.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.62, whole genome shotgun sequence	985..1776	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABNWZT010000076.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.66, whole genome shotgun sequence	163..978	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	EF015636	blaCTX-M-55	100	876/876	ABNWZT010000035.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.39, whole genome shotgun sequence	2355..3230	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABNWZT010000038.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.42, whole genome shotgun sequence	469..1329	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABNWZT010000038.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.42, whole genome shotgun sequence	3533..4390	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaCTX-M-55	100	876/876	ABNWZT010000067.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.48, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABNWZT010000071.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.58, whole genome shotgun sequence	2096..2953	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABNWZT010000075.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.65, whole genome shotgun sequence	474..1334	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNWZT010000045.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.55, whole genome shotgun sequence	2576..3481	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNWZT010000049.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.63, whole genome shotgun sequence	1867..2688	Lincomycin	EU118119	mph(A)	100	906/906	ABNWZT010000070.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.54, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABNWZT010000074.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.62, whole genome shotgun sequence	1908..2729	Lincomycin	EU118119	floR	98.11	1214/1215	ABNWZT010000034.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.38, whole genome shotgun sequence	875..2088	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNWZT010000068.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.51, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNWZT010000041.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.47, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrB19	100	645/645	ABNWZT010000048.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.59, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrS1	100	657/657	ABNWZT010000066.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.46, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	qnrB19	100	645/645	ABNWZT010000073.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.61, whole genome shotgun sequence	621..1265	Ciprofloxacin	EU432277	sul3	100	792/792	ABNWZT010000032.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.35, whole genome shotgun sequence	13388..14179	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABNWZT010000040.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.45, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNWZT010000065.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.43, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABNWZT010000072.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.60, whole genome shotgun sequence	2060..2851	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABNWZT010000031.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNWZT010000064.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.37, whole genome shotgun sequence	5245..6450	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	100	131 / 131	ABNWZT010000048.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.59, whole genome shotgun sequence	1522..1652	enterobacteriales	Col440I	92.11	114 / 114	ABNWZT010000050.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.64, whole genome shotgun sequence	477..590		enterobacteriales	Col440I	91.23	114 / 114	ABNWZT010000073.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.guided.61, whole genome shotgun sequence	4..117		enterobacteriales	IncHI2	100	327 / 327	ABNWZT010000020.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.20, whole genome shotgun sequence	35058..35384		enterobacteriales	IncHI2A	99.52	630 / 630	ABNWZT010000020.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.20, whole genome shotgun sequence	53368..53997		enterobacteriales	IncN	100	512 / 514	ABNWZT010000052.1 Salmonella enterica strain PNUSAS391713 SAMN37845405-rid19842393.denovo.68, whole genome shotgun sequence	470..981																				avrA	ABNWZT010000002.1	540741..541610	99.885	870	0						
GCA_032749355.1_PDT001941065.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNWZU010000001.1 Salmonella enterica strain PNUSAS391720 SAMN37845403-rid19841503.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNWZU010000022.1 Salmonella enterica strain PNUSAS391720 SAMN37845403-rid19841503.guided.14, whole genome shotgun sequence	11141..11578	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNWZU010000012.1 Salmonella enterica strain PNUSAS391720 SAMN37845403-rid19841503.denovo.13, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNWZU010000015.1 Salmonella enterica strain PNUSAS391720 SAMN37845403-rid19841503.denovo.18, whole genome shotgun sequence	3400..3661																																																avrA	ABNWZU010000002.1	553636..554505	99.54	870	0						
GCA_032749375.1_PDT001941064.1_genomic.fna	Salmonella_enterica	0.5135	352.302 KB	5	aroC_65,dnaN_451,hemD_29,hisD_312,purE_20,sucA_26,thrA_60	2765	48:g,z51:-	0		1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_65	dnaN	100	100	dnaN_451	hemD	100	100	hemD_29	hisD	100	100	hisD_312	purE	100	100	purE_20	sucA	100	100	sucA_26	thrA	100	100	thrA_60	48	g,z51	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 48:g,z51:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABNWZX010000018.1 Salmonella enterica strain PNUSAS391703 SAMN37845412-rid19842333.denovo.19, whole genome shotgun sequence	3653..3914																																																																	
GCA_032749435.1_PDT001940931.1_genomic.fna	Salmonella_enterica	0.5207	250.071 KB	8	aroC_10,dnaN_129,hemD_647,hisD_153,purE_8,sucA_9,thrA_22	4329	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_647	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXAD010000006.1 Salmonella enterica strain PNUSAS391572 SAMN37844993-rid19837563.denovo.06, whole genome shotgun sequence	136904..137341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXAD010000037.1 Salmonella enterica strain PNUSAS391572 SAMN37844993-rid19837563.guided.19, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNXAD010000021.1 Salmonella enterica strain PNUSAS391572 SAMN37844993-rid19837563.denovo.22, whole genome shotgun sequence	62722..63364																																																																	
GCA_032749455.1_PDT001940934.1_genomic.fna	Salmonella_enterica	0.5209	278.724 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aadA2,aadA1,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,tet(M),tet(B),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXAA010000001.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.denovo.01, whole genome shotgun sequence	581091..581528	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNXAA010000034.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.denovo.36, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNXAA010000034.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.denovo.36, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNXAA010000057.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.denovo.65, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXAA010000057.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.denovo.65, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aadA2	100	792/792	ABNXAA010000071.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.guided.43, whole genome shotgun sequence	6042..6833	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNXAA010000072.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.guided.44, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNXAA010000073.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.guided.57, whole genome shotgun sequence	2137..2574	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXAA010000075.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.guided.64, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXAA010000075.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.guided.64, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNXAA010000055.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.denovo.62, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNXAA010000076.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.guided.66, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABNXAA010000034.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.denovo.36, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNXAA010000044.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.denovo.49, whole genome shotgun sequence	1107..2320	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABNXAA010000071.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.guided.43, whole genome shotgun sequence	7095..8354	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNXAA010000072.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.guided.44, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNXAA010000074.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.guided.58, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNXAA010000077.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.guided.73, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNXAA010000078.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.guided.74, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(M)	96.15	1920/1920	ABNXAA010000034.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.denovo.36, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNXAA010000038.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.denovo.40, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNXAA010000070.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.guided.41, whole genome shotgun sequence	9827..11032	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNXAA010000072.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.guided.44, whole genome shotgun sequence	4527..6446	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABNXAA010000034.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.denovo.36, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABNXAA010000071.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.guided.43, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																													enterobacteriales	Col156	94.81	154 / 154	ABNXAA010000040.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.denovo.45, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABNXAA010000050.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.denovo.55, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABNXAA010000056.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.denovo.63, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNXAA010000042.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.denovo.47, whole genome shotgun sequence	2453..3134		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNXAA010000025.1 Salmonella enterica strain PNUSAS391593 SAMN37844991-rid19837573.denovo.25, whole genome shotgun sequence	35180..35676																											avrA	ABNXAA010000002.1	508649..509518	99.885	870	0						
GCA_032749475.1_PDT001940929.1_genomic.fna	Salmonella_enterica	0.521	696.391 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXAB010000001.1 Salmonella enterica strain PNUSAS391586 SAMN37844984-rid19837553.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXAB010000032.1 Salmonella enterica strain PNUSAS391586 SAMN37844984-rid19837553.guided.22, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXAB010000018.1 Salmonella enterica strain PNUSAS391586 SAMN37844984-rid19837553.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNXAB010000020.1 Salmonella enterica strain PNUSAS391586 SAMN37844984-rid19837553.denovo.23, whole genome shotgun sequence	3408..3669																																																avrA	ABNXAB010000002.1	553637..554506	99.54	870	0						
GCA_032749495.1_PDT001940921.1_genomic.fna	Salmonella_enterica	0.5214	389.461 KB	6	aroC_52,dnaN_503,hemD_135,hisD_183,purE_184,sucA_53,thrA_102	Unknown	30:b:1,5	3	aac(6')-Iaa,aac(6')-Iaa,sul1,sul1,dfrA21,dfrA21	1	parC_p.T57S	1	IncFIB(pHCM2)	aroC	100	100	aroC_52	dnaN	100	100	dnaN_503	hemD	100	100	hemD_135	hisD	100	100	hisD_183	purE	100	100	purE_184	sucA	100	100	sucA_53	thrA	100	100	thrA_102	30	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Aschersleben		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXAC010000003.1 Salmonella enterica strain PNUSAS391584 SAMN37844964-rid19837523.denovo.03, whole genome shotgun sequence	153957..154394	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXAC010000028.1 Salmonella enterica strain PNUSAS391584 SAMN37844964-rid19837523.guided.16, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNXAC010000015.1 Salmonella enterica strain PNUSAS391584 SAMN37844964-rid19837523.denovo.15, whole genome shotgun sequence	38619..39458	Sulfamethoxazole	U12338	sul1	100	840/840	ABNXAC010000031.1 Salmonella enterica strain PNUSAS391584 SAMN37844964-rid19837523.guided.24, whole genome shotgun sequence	13764..14603	Sulfamethoxazole	U12338	dfrA21	100	498/498	ABNXAC010000015.1 Salmonella enterica strain PNUSAS391584 SAMN37844964-rid19837523.denovo.15, whole genome shotgun sequence	39986..40483	Trimethoprim	AY552589	dfrA21	100	498/498	ABNXAC010000031.1 Salmonella enterica strain PNUSAS391584 SAMN37844964-rid19837523.guided.24, whole genome shotgun sequence	12739..13236	Trimethoprim	AY552589																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	97.17	884 / 875	ABNXAC010000015.1 Salmonella enterica strain PNUSAS391584 SAMN37844964-rid19837523.denovo.15, whole genome shotgun sequence	11561..12444																																																						avrA	ABNXAC010000001.1	39548..40417	99.54	870	0						
GCA_032749515.1_PDT001940919.1_genomic.fna	Salmonella_enterica	0.5212	255.87 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXAE010000001.1 Salmonella enterica strain PNUSAS391570 SAMN37844962-rid19837513.denovo.01, whole genome shotgun sequence	494644..495081	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXAE010000038.1 Salmonella enterica strain PNUSAS391570 SAMN37844962-rid19837513.guided.25, whole genome shotgun sequence	1034..1471	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXAE010000002.1	144724..145593	99.31	870	0						
GCA_032749535.1_PDT001940899.1_genomic.fna	Salmonella_enterica	0.5206	392.679 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNXAF010000001.1 Salmonella enterica strain PNUSAS391646 SAMN37844956-rid19837473.denovo.01, whole genome shotgun sequence	517672..518109	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNXAF010000027.1 Salmonella enterica strain PNUSAS391646 SAMN37844956-rid19837473.guided.21, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXAF010000006.1	198589..199457	99.425	870	0						
GCA_032749655.1_PDT001940839.1_genomic.fna	Salmonella_enterica	0.5221	180.364 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_70,sucA_9,thrA_2	213	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_70	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXAL010000001.1 Salmonella enterica strain PNUSAS391261 SAMN37844115-rid19837303.denovo.01, whole genome shotgun sequence	145582..146019	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXAL010000055.1 Salmonella enterica strain PNUSAS391261 SAMN37844115-rid19837303.guided.43, whole genome shotgun sequence	5390..5827	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	99.48	193 / 193	ABNXAL010000046.1 Salmonella enterica strain PNUSAS391261 SAMN37844115-rid19837303.denovo.49, whole genome shotgun sequence	1019..1211	enterobacteriales	IncFIB(S)	100	643 / 643	ABNXAL010000025.1 Salmonella enterica strain PNUSAS391261 SAMN37844115-rid19837303.denovo.25, whole genome shotgun sequence	48436..49078		enterobacteriales	IncFII(S)	100	262 / 262	ABNXAL010000035.1 Salmonella enterica strain PNUSAS391261 SAMN37844115-rid19837303.denovo.35, whole genome shotgun sequence	29460..29721																																									avrA	ABNXAL010000009.1	95120..95989	99.885	870	0						
GCA_032749675.1_PDT001940835.1_genomic.fna	Salmonella_enterica	0.5223	50.374 KB	27	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,sul2,sul1,sul1,sul2,tet(A),tet(C),tet(A),tet(C)	0		2	Col(pHAD28),Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXAM010000061.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314579 SAMN37844076-rid19838673.denovo.061, whole genome shotgun sequence	13138..13575	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNXAM010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314579 SAMN37844076-rid19838673.denovo.094, whole genome shotgun sequence	12506..13408	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNXAM010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314579 SAMN37844076-rid19838673.denovo.094, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNXAM010000149.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314579 SAMN37844076-rid19838673.guided.064, whole genome shotgun sequence	15591..16028	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNXAM010000153.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314579 SAMN37844076-rid19838673.guided.115, whole genome shotgun sequence	37..939	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABNXAM010000156.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314579 SAMN37844076-rid19838673.guided.127, whole genome shotgun sequence	2402..3193	Spectinomycin, Streptomycin	JQ414041	sul2	100	816/816	ABNXAM010000071.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314579 SAMN37844076-rid19838673.denovo.072, whole genome shotgun sequence	20100..20915	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNXAM010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314579 SAMN37844076-rid19838673.denovo.094, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul1	100	840/840	ABNXAM010000152.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314579 SAMN37844076-rid19838673.guided.113, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	sul2	100	816/816	ABNXAM010000155.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314579 SAMN37844076-rid19838673.guided.126, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNXAM010000071.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314579 SAMN37844076-rid19838673.denovo.072, whole genome shotgun sequence	23092..24291	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNXAM010000127.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314579 SAMN37844076-rid19838673.denovo.136, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABNXAM010000154.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314579 SAMN37844076-rid19838673.guided.123, whole genome shotgun sequence	1052..2251	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNXAM010000157.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314579 SAMN37844076-rid19838673.guided.135, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNXAM010000115.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314579 SAMN37844076-rid19838673.denovo.120, whole genome shotgun sequence	371..501	enterobacteriales	Col156	94.81	154 / 154	ABNXAM010000118.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314579 SAMN37844076-rid19838673.denovo.124, whole genome shotgun sequence	791..944																																																avrA	ABNXAM010000007.1	16452..17321	99.885	870	0						
GCA_032749695.1_PDT001940828.1_genomic.fna	Salmonella_enterica	0.5221	59.127 KB	26	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		4	Col(pHAD28),Col440I,ColRNAI,ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXAN010000021.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314556 SAMN37844053-rid19838653.denovo.021, whole genome shotgun sequence	13140..13577	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXAN010000147.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314556 SAMN37844053-rid19838653.guided.084, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNXAN010000038.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314556 SAMN37844053-rid19838653.denovo.038, whole genome shotgun sequence	40069..40884	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNXAN010000145.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314556 SAMN37844053-rid19838653.guided.042, whole genome shotgun sequence	40110..40925	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNXAN010000038.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314556 SAMN37844053-rid19838653.denovo.038, whole genome shotgun sequence	43061..44260	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNXAN010000149.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314556 SAMN37844053-rid19838653.guided.126, whole genome shotgun sequence	906..2105	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNXAN010000118.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314556 SAMN37844053-rid19838653.denovo.122, whole genome shotgun sequence	371..501	enterobacteriales	Col440I	93.81	113 / 114	ABNXAN010000125.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314556 SAMN37844053-rid19838653.denovo.130, whole genome shotgun sequence	2527..2638		enterobacteriales	ColRNAI	90.08	131 / 130	ABNXAN010000119.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314556 SAMN37844053-rid19838653.denovo.123, whole genome shotgun sequence	4023..4153		enterobacteriales	ColpVC	98.96	193 / 193	ABNXAN010000131.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314556 SAMN37844053-rid19838653.denovo.136, whole genome shotgun sequence	805..997																																		avrA	ABNXAN010000019.1	61654..62523	99.885	870	0						
GCA_032749715.1_PDT001940817.1_genomic.fna	Salmonella_enterica	0.5229	62.558 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXAO010000057.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314553 SAMN37844037-rid19837243.denovo.058, whole genome shotgun sequence	13045..13482	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXAO010000141.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314553 SAMN37844037-rid19837243.guided.062, whole genome shotgun sequence	12427..12864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNXAO010000091.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314553 SAMN37844037-rid19837243.denovo.093, whole genome shotgun sequence	73..715	enterobacteriales	IncFII(S)	100	262 / 262	ABNXAO010000080.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314553 SAMN37844037-rid19837243.denovo.082, whole genome shotgun sequence	12254..12515																																																avrA	ABNXAO010000007.1	105584..106452	100	869	0						
GCA_032749735.1_PDT001940792.1_genomic.fna	Salmonella_enterica	0.5212	480.935 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXAP010000001.1 Salmonella enterica strain PNUSAS391615 SAMN37844016-rid19837133.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXAP010000025.1 Salmonella enterica strain PNUSAS391615 SAMN37844016-rid19837133.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXAP010000016.1 Salmonella enterica strain PNUSAS391615 SAMN37844016-rid19837133.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNXAP010000017.1 Salmonella enterica strain PNUSAS391615 SAMN37844016-rid19837133.denovo.20, whole genome shotgun sequence	3404..3665																																																avrA	ABNXAP010000002.1	553642..554511	99.54	870	0						
GCA_032749755.1_PDT001940760.1_genomic.fna	Salmonella_enterica	0.5209	202.867 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXAR010000001.1 Salmonella enterica strain PNUSAS391496 SAMN37831683-rid19838453.denovo.01, whole genome shotgun sequence	232954..233391	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXAR010000045.1 Salmonella enterica strain PNUSAS391496 SAMN37831683-rid19838453.guided.19, whole genome shotgun sequence	14357..14794	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXAR010000003.1	174353..175221	99.77	870	0						
GCA_032749795.1_PDT001940750.1_genomic.fna	Salmonella_enterica	0.5198	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXAS010000001.1 Salmonella enterica strain PNUSAS391502 SAMN37831685-rid19838403.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXAS010000027.1 Salmonella enterica strain PNUSAS391502 SAMN37831685-rid19838403.guided.14, whole genome shotgun sequence	16978..17415	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXAS010000014.1 Salmonella enterica strain PNUSAS391502 SAMN37831685-rid19838403.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNXAS010000014.1 Salmonella enterica strain PNUSAS391502 SAMN37831685-rid19838403.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNXAS010000002.1	553077..553946	99.54	870	0						
GCA_032749815.1_PDT001940748.1_genomic.fna	Salmonella_enterica	0.5212	406.073 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXAT010000006.1 Salmonella enterica strain PNUSAS391505 SAMN37831693-rid19838393.denovo.06, whole genome shotgun sequence	56448..56885	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXAT010000032.1 Salmonella enterica strain PNUSAS391505 SAMN37831693-rid19838393.guided.26, whole genome shotgun sequence	1371..1808	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXAT010000017.1 Salmonella enterica strain PNUSAS391505 SAMN37831693-rid19838393.denovo.17, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABNXAT010000017.1 Salmonella enterica strain PNUSAS391505 SAMN37831693-rid19838393.denovo.17, whole genome shotgun sequence	4078..4339																																																avrA	ABNXAT010000002.1	552782..553651	99.54	870	0						
GCA_032749835.1_PDT001940716.1_genomic.fna	Salmonella_enterica	0.5214	375.653 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXAU010000001.1 Salmonella enterica strain PNUSAS391435 SAMN37831612-rid19838283.denovo.01, whole genome shotgun sequence	200042..200479	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXAU010000031.1 Salmonella enterica strain PNUSAS391435 SAMN37831612-rid19838283.guided.26, whole genome shotgun sequence	1021..1458	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXAU010000017.1 Salmonella enterica strain PNUSAS391435 SAMN37831612-rid19838283.denovo.17, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNXAU010000022.1 Salmonella enterica strain PNUSAS391435 SAMN37831612-rid19838283.denovo.23, whole genome shotgun sequence	3395..3656																																																avrA	ABNXAU010000003.1	175197..176066	99.54	870	0						
GCA_032749855.1_PDT001940715.1_genomic.fna	Salmonella_enterica	0.5211	394.873 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXAV010000001.1 Salmonella enterica strain PNUSAS391436 SAMN37831588-rid19838273.denovo.01, whole genome shotgun sequence	527904..528341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXAV010000032.1 Salmonella enterica strain PNUSAS391436 SAMN37831588-rid19838273.guided.20, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXAV010000002.1	145182..146051	99.31	870	0						
GCA_032749875.1_PDT001940706.1_genomic.fna	Salmonella_enterica	0.5207	279.777 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXAW010000001.1 Salmonella enterica strain PNUSAS391437 SAMN37831585-rid19838253.denovo.01, whole genome shotgun sequence	584085..584522	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXAW010000037.1 Salmonella enterica strain PNUSAS391437 SAMN37831585-rid19838253.denovo.42, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXAW010000037.1 Salmonella enterica strain PNUSAS391437 SAMN37831585-rid19838253.denovo.42, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNXAW010000054.1 Salmonella enterica strain PNUSAS391437 SAMN37831585-rid19838253.guided.37, whole genome shotgun sequence	2733..3170	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXAW010000055.1 Salmonella enterica strain PNUSAS391437 SAMN37831585-rid19838253.guided.41, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXAW010000055.1 Salmonella enterica strain PNUSAS391437 SAMN37831585-rid19838253.guided.41, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNXAW010000044.1 Salmonella enterica strain PNUSAS391437 SAMN37831585-rid19838253.denovo.50, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNXAW010000056.1 Salmonella enterica strain PNUSAS391437 SAMN37831585-rid19838253.guided.49, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNXAW010000037.1 Salmonella enterica strain PNUSAS391437 SAMN37831585-rid19838253.denovo.42, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNXAW010000055.1 Salmonella enterica strain PNUSAS391437 SAMN37831585-rid19838253.guided.41, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNXAW010000032.1 Salmonella enterica strain PNUSAS391437 SAMN37831585-rid19838253.denovo.35, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNXAW010000053.1 Salmonella enterica strain PNUSAS391437 SAMN37831585-rid19838253.guided.34, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncX1	98.66	374 / 374	ABNXAW010000029.1 Salmonella enterica strain PNUSAS391437 SAMN37831585-rid19838253.denovo.29, whole genome shotgun sequence	13082..13455																																																						avrA	ABNXAW010000002.1	621421..622290	99.885	870	0						
GCA_032749895.1_PDT001940705.1_genomic.fna	Salmonella_enterica	0.5213	677.208 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13*,sucA_16,thrA_4	24*	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	99.749373433584	100	purE_13*	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXAX010000001.1 Salmonella enterica strain PNUSAS391432 SAMN37831587-rid19838243.denovo.01, whole genome shotgun sequence	510544..510981	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXAX010000021.1 Salmonella enterica strain PNUSAS391432 SAMN37831587-rid19838243.guided.15, whole genome shotgun sequence	9620..10057	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXAX010000003.1	525248..526116	99.425	870	0						
GCA_032750175.1_PDT001940555.1_genomic.fna	Salmonella_enterica	0.5217	324.812 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGHH010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -2 SAMN32778102-rid19836463.denovo.03, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(S)	100	643 / 643	DAQGHH010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -2 SAMN32778102-rid19836463.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	DAQGHH010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -2 SAMN32778102-rid19836463.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	DAQGHH010000001.1	446575..447443	100	869	0						
GCA_032750495.1_PDT001940549.1_genomic.fna	Salmonella_enterica	0.5217	137.608 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGHN010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -7 SAMN32778107-rid19836443.denovo.16, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGHN010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -7 SAMN32778107-rid19836443.guided.67, whole genome shotgun sequence	415..852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGHN010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -7 SAMN32778107-rid19836443.denovo.18, whole genome shotgun sequence	48422..49064	enterobacteriales	IncFII(S)	100	262 / 262	DAQGHN010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -7 SAMN32778107-rid19836443.denovo.18, whole genome shotgun sequence	64149..64410																																																avrA	DAQGHN010000004.1	95312..96180	100	869	0						
GCA_032750615.1_PDT001940280.1_genomic.fna	Salmonella_enterica	0.5205	438.756 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGHV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073184 SAMN37820142-rid19834013.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQGHV010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073184 SAMN37820142-rid19834013.guided.13, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	DAQGHV010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073184 SAMN37820142-rid19834013.denovo.31, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQGHV010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073184 SAMN37820142-rid19834013.guided.32, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGHV010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073184 SAMN37820142-rid19834013.denovo.18, whole genome shotgun sequence	48111..48753	enterobacteriales	IncFII(S)	100	262 / 262	DAQGHV010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073184 SAMN37820142-rid19834013.denovo.18, whole genome shotgun sequence	3859..4120		enterobacteriales	IncX1	95.76	377 / 377	DAQGHV010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00073184 SAMN37820142-rid19834013.denovo.23, whole genome shotgun sequence	4749..5125																																									avrA	DAQGHV010000002.1	552950..553819	99.54	870	0						
GCA_032750635.1_PDT001940290.1_genomic.fna	Salmonella_enterica	0.5213	132.883 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGHU010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049667 SAMN37820133-rid19834033.denovo.02, whole genome shotgun sequence	12533..12970	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGHU010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049667 SAMN37820133-rid19834033.guided.11, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGHU010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049667 SAMN37820133-rid19834033.denovo.17, whole genome shotgun sequence	48442..49084	enterobacteriales	IncFII(S)	100	262 / 262	DAQGHU010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049667 SAMN37820133-rid19834033.denovo.17, whole genome shotgun sequence	64169..64430																																																avrA	DAQGHU010000005.1	108331..109200	99.885	870	0						
GCA_032750675.1_PDT001940221.1_genomic.fna	Salmonella_enterica	0.522	55.138 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGHW010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045249 SAMN37819820-rid19831323.denovo.016, whole genome shotgun sequence	15461..15898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGHW010000148.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045249 SAMN37819820-rid19831323.guided.028, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	98.96	193 / 193	DAQGHW010000117.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00045249 SAMN37819820-rid19831323.denovo.120, whole genome shotgun sequence	805..997																																																						avrA	DAQGHW010000005.1	99943..100812	99.885	870	0						
GCA_032750695.1_PDT001939895.1_genomic.fna	Salmonella_enterica	0.5215	140.762 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGHY010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040739 SAMN37819771-rid19835293.denovo.04, whole genome shotgun sequence	106363..106800	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQGHY010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040739 SAMN37819771-rid19835293.guided.39, whole genome shotgun sequence	24351..24788	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQGHY010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040739 SAMN37819771-rid19835293.denovo.53, whole genome shotgun sequence	358..488	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGHY010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040739 SAMN37819771-rid19835293.denovo.33, whole genome shotgun sequence	40527..41169		enterobacteriales	IncFII(S)	100	262 / 262	DAQGHY010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00040739 SAMN37819771-rid19835293.denovo.48, whole genome shotgun sequence	3413..3674																																									avrA	DAQGHY010000006.1	140958..141827	99.54	870	0						
GCA_032750715.1_PDT001940043.1_genomic.fna	Salmonella_enterica	0.521	230.276 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI(Gamma),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGHX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038498 SAMN37819753-rid19833943.denovo.01, whole genome shotgun sequence	151868..152305	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQGHX010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038498 SAMN37819753-rid19833943.guided.30, whole genome shotgun sequence	15493..15930	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGHX010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038498 SAMN37819753-rid19833943.denovo.26, whole genome shotgun sequence	40542..41184	enterobacteriales	IncFII(S)	100	262 / 262	DAQGHX010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038498 SAMN37819753-rid19833943.denovo.38, whole genome shotgun sequence	3424..3685		enterobacteriales	IncI(Gamma)	95.62	137 / 141	DAQGHX010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038498 SAMN37819753-rid19833943.denovo.18, whole genome shotgun sequence	38363..38499		enterobacteriales	IncX1	95.76	377 / 377	DAQGHX010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00038498 SAMN37819753-rid19833943.denovo.27, whole genome shotgun sequence	34215..34591																																		avrA	DAQGHX010000007.1	140846..141715	99.54	870	0						
GCA_032750735.1_PDT001939982.1_genomic.fna	Salmonella_enterica	0.521	144.608 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGHZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046733 SAMN37819981-rid19835343.denovo.01, whole genome shotgun sequence	145244..145681	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGHZ010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046733 SAMN37819981-rid19835343.guided.25, whole genome shotgun sequence	15746..16183	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGHZ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046733 SAMN37819981-rid19835343.denovo.15, whole genome shotgun sequence	44644..45286	enterobacteriales	IncFII(S)	100	262 / 262	DAQGHZ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046733 SAMN37819981-rid19835343.denovo.15, whole genome shotgun sequence	60371..60632		enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQGHZ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00046733 SAMN37819981-rid19835343.denovo.17, whole genome shotgun sequence	15829..15965																																									avrA	DAQGHZ010000009.1	108409..109278	99.885	870	0						
GCA_032750755.1_PDT001939889.1_genomic.fna	Salmonella_enterica	0.5226	212.771 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQGIB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041081 SAMN37819777-rid19833903.denovo.01, whole genome shotgun sequence	477837..478274	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQGIB010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00041081 SAMN37819777-rid19833903.guided.22, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQGIB010000005.1	39536..40405	99.77	870	0						
GCA_032750795.1_PDT001939812.1_genomic.fna	Salmonella_enterica	0.5212	109.619 KB	12	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQGIA010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049090 SAMN37820106-rid19833873.denovo.27, whole genome shotgun sequence	15491..15928	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQGIA010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049090 SAMN37820106-rid19833873.guided.09, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGIA010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049090 SAMN37820106-rid19833873.denovo.14, whole genome shotgun sequence	44647..45289	enterobacteriales	IncFII(S)	100	262 / 262	DAQGIA010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate AUSMDU00049090 SAMN37820106-rid19833873.denovo.14, whole genome shotgun sequence	60374..60635																																																avrA	DAQGIA010000006.1	108249..109118	99.885	870	0						
GCA_032750815.1_PDT001793607.1_genomic.fna	Salmonella_enterica	0.5175	76.477 KB	24	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncHI2,IncHI2A,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aph(6)-Id	100	837/837	ABNXBI010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322969 SAMN36073154-rid18781703.denovo.052, whole genome shotgun sequence	2315..3151	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNXBI010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322969 SAMN36073154-rid18781703.denovo.052, whole genome shotgun sequence	1513..2315	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNXBI010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322969 SAMN36073154-rid18781703.denovo.052, whole genome shotgun sequence	1512..2315	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNXBI010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322969 SAMN36073154-rid18781703.denovo.052, whole genome shotgun sequence	1512..2315	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNXBI010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322969 SAMN36073154-rid18781703.denovo.052, whole genome shotgun sequence	1512..2315	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNXBI010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322969 SAMN36073154-rid18781703.guided.068, whole genome shotgun sequence	2356..3192	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNXBI010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322969 SAMN36073154-rid18781703.guided.068, whole genome shotgun sequence	1554..2356	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNXBI010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322969 SAMN36073154-rid18781703.guided.068, whole genome shotgun sequence	1553..2356	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNXBI010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322969 SAMN36073154-rid18781703.guided.068, whole genome shotgun sequence	1553..2356	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNXBI010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322969 SAMN36073154-rid18781703.guided.068, whole genome shotgun sequence	1553..2356	Streptomycin	AF321550	tet(B)	100	1206/1206	ABNXBI010000067.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322969 SAMN36073154-rid18781703.denovo.067, whole genome shotgun sequence	679..1884	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNXBI010000197.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322969 SAMN36073154-rid18781703.guided.143, whole genome shotgun sequence	742..1947	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNXBI010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322969 SAMN36073154-rid18781703.denovo.041, whole genome shotgun sequence	24199..24525	enterobacteriales	IncHI2A	99.52	630 / 630	ABNXBI010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322969 SAMN36073154-rid18781703.denovo.041, whole genome shotgun sequence	42509..43138		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNXBI010000067.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322969 SAMN36073154-rid18781703.denovo.067, whole genome shotgun sequence	8270..8411		enterobacteriales	IncX1	100	373 / 373	ABNXBI010000106.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322969 SAMN36073154-rid18781703.denovo.109, whole genome shotgun sequence	2218..2590																																		avrA	ABNXBI010000040.1	39616..40485	99.655	870	0						
GCA_032750835.1_PDT001793431.1_genomic.fna	Salmonella_enterica	0.5198	282.311 KB	6	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncFIB(pHCM2)	aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNXBJ010000001.1 Salmonella enterica strain PNUSAS359420 SAMN36036575-rid18574763.denovo.01, whole genome shotgun sequence	164339..164776	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNXBJ010000041.1 Salmonella enterica strain PNUSAS359420 SAMN36036575-rid18574763.guided.31, whole genome shotgun sequence	1855..2292	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNXBJ010000029.1 Salmonella enterica strain PNUSAS359420 SAMN36036575-rid18574763.denovo.33, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNXBJ010000042.1 Salmonella enterica strain PNUSAS359420 SAMN36036575-rid18574763.guided.32, whole genome shotgun sequence	946..1590	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNXBJ010000029.1 Salmonella enterica strain PNUSAS359420 SAMN36036575-rid18574763.denovo.33, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNXBJ010000042.1 Salmonella enterica strain PNUSAS359420 SAMN36036575-rid18574763.guided.32, whole genome shotgun sequence	290..420		enterobacteriales	IncFIB(pHCM2)	97.4	884 / 875	ABNXBJ010000016.1 Salmonella enterica strain PNUSAS359420 SAMN36036575-rid18574763.denovo.16, whole genome shotgun sequence	24332..25215																																									avrA	ABNXBJ010000008.1	137867..138736	99.425	870	0						
GCA_032751655.1_PDT001787803.1_genomic.fna	Salmonella_enterica	0.5211	252.711 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXBL010000003.1 Salmonella enterica strain PNUSAS358137 isolate 23-000777-BAC-01 SAMN35879554-rid18541203.denovo.03, whole genome shotgun sequence	162390..162827	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXBL010000038.1 Salmonella enterica strain PNUSAS358137 isolate 23-000777-BAC-01 SAMN35879554-rid18541203.guided.33, whole genome shotgun sequence	1258..1695	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXBL010000024.1 Salmonella enterica strain PNUSAS358137 isolate 23-000777-BAC-01 SAMN35879554-rid18541203.denovo.24, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNXBL010000024.1 Salmonella enterica strain PNUSAS358137 isolate 23-000777-BAC-01 SAMN35879554-rid18541203.denovo.24, whole genome shotgun sequence	5032..5293																																																avrA	ABNXBL010000001.1	584926..585795	99.54	870	0						
GCA_032752275.1_PDT001787742.1_genomic.fna	Salmonella_enterica	0.5211	286.795 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXCT010000001.1 Salmonella enterica strain PNUSAS358138 SAMN35878139-rid18540363.denovo.01, whole genome shotgun sequence	240408..240845	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXCT010000036.1 Salmonella enterica strain PNUSAS358138 SAMN35878139-rid18540363.guided.28, whole genome shotgun sequence	5285..5722	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	ABNXCT010000026.1 Salmonella enterica strain PNUSAS358138 SAMN35878139-rid18540363.denovo.29, whole genome shotgun sequence	792..945	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXCT010000019.1 Salmonella enterica strain PNUSAS358138 SAMN35878139-rid18540363.denovo.19, whole genome shotgun sequence	48650..49292		enterobacteriales	IncFII(S)	100	262 / 262	ABNXCT010000019.1 Salmonella enterica strain PNUSAS358138 SAMN35878139-rid18540363.denovo.19, whole genome shotgun sequence	4406..4667																																									avrA	ABNXCT010000002.1	553058..553927	99.54	870	0						
GCA_032752315.1_PDT001787741.1_genomic.fna	Salmonella_enterica	0.5205	182.661 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,sul1,tet(G),tet(G)	0		1	IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXCS010000003.1 Salmonella enterica strain PNUSAS358139 SAMN35878140-rid18538983.denovo.03, whole genome shotgun sequence	161746..162183	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNXCS010000063.1 Salmonella enterica strain PNUSAS358139 SAMN35878140-rid18538983.denovo.70, whole genome shotgun sequence	17..796	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNXCS010000072.1 Salmonella enterica strain PNUSAS358139 SAMN35878140-rid18538983.guided.22, whole genome shotgun sequence	25359..25796	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNXCS010000078.1 Salmonella enterica strain PNUSAS358139 SAMN35878140-rid18538983.guided.68, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNXCS010000060.1 Salmonella enterica strain PNUSAS358139 SAMN35878140-rid18538983.denovo.66, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNXCS010000077.1 Salmonella enterica strain PNUSAS358139 SAMN35878140-rid18538983.guided.65, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNXCS010000046.1 Salmonella enterica strain PNUSAS358139 SAMN35878140-rid18538983.denovo.50, whole genome shotgun sequence	5127..6341	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNXCS010000075.1 Salmonella enterica strain PNUSAS358139 SAMN35878140-rid18538983.guided.49, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNXCS010000026.1 Salmonella enterica strain PNUSAS358139 SAMN35878140-rid18538983.denovo.27, whole genome shotgun sequence	434..1273	Sulfamethoxazole	U12338	sul1	100	840/840	ABNXCS010000076.1 Salmonella enterica strain PNUSAS358139 SAMN35878140-rid18538983.guided.57, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNXCS010000046.1 Salmonella enterica strain PNUSAS358139 SAMN35878140-rid18538983.denovo.50, whole genome shotgun sequence	3015..4190	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNXCS010000075.1 Salmonella enterica strain PNUSAS358139 SAMN35878140-rid18538983.guided.49, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFII(S)	100	262 / 262	ABNXCS010000044.1 Salmonella enterica strain PNUSAS358139 SAMN35878140-rid18538983.denovo.47, whole genome shotgun sequence	9330..9591																																																						avrA	ABNXCS010000001.1	401365..402234	99.885	870	0						
GCA_032752335.1_PDT001787740.1_genomic.fna	Salmonella_enterica	0.5212	285.987 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXCR010000002.1 Salmonella enterica strain PNUSAS358136 isolate 23-000776-BAC-01 SAMN35878137-rid18541013.denovo.02, whole genome shotgun sequence	162388..162825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXCR010000034.1 Salmonella enterica strain PNUSAS358136 isolate 23-000776-BAC-01 SAMN35878137-rid18541013.guided.25, whole genome shotgun sequence	6675..7112	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXCR010000020.1 Salmonella enterica strain PNUSAS358136 isolate 23-000776-BAC-01 SAMN35878137-rid18541013.denovo.20, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNXCR010000020.1 Salmonella enterica strain PNUSAS358136 isolate 23-000776-BAC-01 SAMN35878137-rid18541013.denovo.20, whole genome shotgun sequence	5032..5293																																																avrA	ABNXCR010000001.1	584292..585161	99.54	870	0						
GCA_032752355.1_PDT001787739.1_genomic.fna	Salmonella_enterica	0.5226	243.99 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXCU010000001.1 Salmonella enterica strain PNUSAS358135 isolate 23-000775-BAC-01 SAMN35878136-rid18540353.denovo.01, whole genome shotgun sequence	483895..484332	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXCU010000039.1 Salmonella enterica strain PNUSAS358135 isolate 23-000775-BAC-01 SAMN35878136-rid18540353.guided.28, whole genome shotgun sequence	14550..14987	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXCU010000002.1	149600..150469	99.655	870	0						
GCA_032752535.1_PDT001787729.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXDE010000001.1 Salmonella enterica strain PNUSAS358099 SAMN35878074-rid18540283.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXDE010000022.1 Salmonella enterica strain PNUSAS358099 SAMN35878074-rid18540283.guided.18, whole genome shotgun sequence	3679..4116	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABNXDE010000002.1	553633..554502	99.54	870	0						
GCA_032752555.1_PDT001787730.1_genomic.fna	Salmonella_enterica	0.5214	407.008 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXDD010000001.1 Salmonella enterica strain PNUSAS358098 SAMN35878076-rid18540993.denovo.01, whole genome shotgun sequence	293266..293703	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXDD010000030.1 Salmonella enterica strain PNUSAS358098 SAMN35878076-rid18540993.guided.27, whole genome shotgun sequence	685..1122	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXDD010000021.1 Salmonella enterica strain PNUSAS358098 SAMN35878076-rid18540993.denovo.21, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNXDD010000022.1 Salmonella enterica strain PNUSAS358098 SAMN35878076-rid18540993.denovo.23, whole genome shotgun sequence	3403..3664																																																avrA	ABNXDD010000002.1	553636..554505	99.54	870	0						
GCA_032752575.1_PDT001787728.1_genomic.fna	Salmonella_enterica	0.5216	268.391 KB	5	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pXuzhou21	aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXDF010000003.1 Salmonella enterica strain PNUSAS358101 SAMN35878073-rid18540983.denovo.03, whole genome shotgun sequence	336109..336546	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXDF010000030.1 Salmonella enterica strain PNUSAS358101 SAMN35878073-rid18540983.guided.25, whole genome shotgun sequence	5814..6251	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pXuzhou21	98.33	720 / 720	ABNXDF010000022.1 Salmonella enterica strain PNUSAS358101 SAMN35878073-rid18540983.denovo.22, whole genome shotgun sequence	24197..24916																																																						avrA	ABNXDF010000001.1	508550..509419	99.77	870	0						
GCA_032752595.1_PDT001787726.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXDH010000001.1 Salmonella enterica strain PNUSAS358108 SAMN35878065-rid18540263.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXDH010000023.1 Salmonella enterica strain PNUSAS358108 SAMN35878065-rid18540263.guided.18, whole genome shotgun sequence	10073..10510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXDH010000018.1 Salmonella enterica strain PNUSAS358108 SAMN35878065-rid18540263.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNXDH010000019.1 Salmonella enterica strain PNUSAS358108 SAMN35878065-rid18540263.denovo.22, whole genome shotgun sequence	3395..3656																																																avrA	ABNXDH010000002.1	553530..554399	99.54	870	0						
GCA_032752605.1_PDT001787727.1_genomic.fna	Salmonella_enterica	0.5221	191.426 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXDG010000001.1 Salmonella enterica strain PNUSAS358097 SAMN35878077-rid18540273.denovo.01, whole genome shotgun sequence	380041..380478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXDG010000052.1 Salmonella enterica strain PNUSAS358097 SAMN35878077-rid18540273.guided.43, whole genome shotgun sequence	10626..11063	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXDG010000003.1	218367..219235	99.77	870	0						
GCA_032752635.1_PDT001787725.1_genomic.fna	Salmonella_enterica	0.522	150.295 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXDI010000001.1 Salmonella enterica strain PNUSAS358095 SAMN35878075-rid18540253.denovo.01, whole genome shotgun sequence	141145..141582	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXDI010000059.1 Salmonella enterica strain PNUSAS358095 SAMN35878075-rid18540253.guided.57, whole genome shotgun sequence	618..1055	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXDI010000009.1	98459..99327	99.77	870	0						
GCA_032752655.1_PDT001787724.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXDK010000001.1 Salmonella enterica strain PNUSAS358104 SAMN35878066-rid18540243.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXDK010000021.1 Salmonella enterica strain PNUSAS358104 SAMN35878066-rid18540243.guided.16, whole genome shotgun sequence	9481..9918	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXDK010000015.1 Salmonella enterica strain PNUSAS358104 SAMN35878066-rid18540243.denovo.15, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNXDK010000016.1 Salmonella enterica strain PNUSAS358104 SAMN35878066-rid18540243.denovo.18, whole genome shotgun sequence	3403..3664																																																avrA	ABNXDK010000002.1	553530..554399	99.54	870	0						
GCA_032752675.1_PDT001787723.1_genomic.fna	Salmonella_enterica	0.5224	648.54 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXDJ010000001.1 Salmonella enterica strain PNUSAS358106 SAMN35878070-rid18540973.denovo.01, whole genome shotgun sequence	458327..458764	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNXDJ010000024.1 Salmonella enterica strain PNUSAS358106 SAMN35878070-rid18540973.guided.16, whole genome shotgun sequence	12087..12524	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXDJ010000003.1	553810..554679	99.77	870	0						
GCA_032752695.1_PDT001787722.1_genomic.fna	Salmonella_enterica	0.5213	331.885 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXDL010000002.1 Salmonella enterica strain PNUSAS358105 SAMN35878072-rid18540233.denovo.02, whole genome shotgun sequence	239067..239504	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXDL010000032.1 Salmonella enterica strain PNUSAS358105 SAMN35878072-rid18540233.guided.26, whole genome shotgun sequence	555..992	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXDL010000023.1 Salmonella enterica strain PNUSAS358105 SAMN35878072-rid18540233.denovo.23, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNXDL010000024.1 Salmonella enterica strain PNUSAS358105 SAMN35878072-rid18540233.denovo.25, whole genome shotgun sequence	3395..3656																																																avrA	ABNXDL010000001.1	553132..554001	99.54	870	0						
GCA_032752715.1_PDT001787721.1_genomic.fna	Salmonella_enterica	0.5212	439.144 KB	4	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNXDM010000001.1 Salmonella enterica strain PNUSAS358103 SAMN35878069-rid18540223.denovo.01, whole genome shotgun sequence	648594..649031	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.27	413/438	ABNXDM010000022.1 Salmonella enterica strain PNUSAS358103 SAMN35878069-rid18540223.guided.21, whole genome shotgun sequence	1..413	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXDM010000002.1	568645..569514	99.425	870	0						
GCA_032752735.1_PDT001787720.1_genomic.fna	Salmonella_enterica	0.5215	280.391 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXDN010000001.1 Salmonella enterica strain PNUSAS358107 SAMN35878068-rid18540963.denovo.01, whole genome shotgun sequence	482675..483112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXDN010000044.1 Salmonella enterica strain PNUSAS358107 SAMN35878068-rid18540963.guided.28, whole genome shotgun sequence	8037..8474	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNXDN010000025.1 Salmonella enterica strain PNUSAS358107 SAMN35878068-rid18540963.denovo.25, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNXDN010000025.1 Salmonella enterica strain PNUSAS358107 SAMN35878068-rid18540963.denovo.25, whole genome shotgun sequence	9325..9586																																																avrA	ABNXDN010000002.1	209732..210601	99.885	870	0						
GCA_032752755.1_PDT001787719.1_genomic.fna	Salmonella_enterica	0.5214	307.499 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXDO010000002.1 Salmonella enterica strain PNUSAS358096 SAMN35878071-rid18540213.denovo.02, whole genome shotgun sequence	199999..200436	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXDO010000032.1 Salmonella enterica strain PNUSAS358096 SAMN35878071-rid18540213.guided.29, whole genome shotgun sequence	923..1360	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNXDO010000026.1 Salmonella enterica strain PNUSAS358096 SAMN35878071-rid18540213.denovo.28, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXDO010000023.1 Salmonella enterica strain PNUSAS358096 SAMN35878071-rid18540213.denovo.23, whole genome shotgun sequence	6820..7462		enterobacteriales	IncFII(S)	100	262 / 262	ABNXDO010000024.1 Salmonella enterica strain PNUSAS358096 SAMN35878071-rid18540213.denovo.26, whole genome shotgun sequence	3402..3663																																									avrA	ABNXDO010000001.1	553636..554505	99.54	870	0						
GCA_032752775.1_PDT001787718.1_genomic.fna	Salmonella_enterica	0.5218	338.294 KB	5	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNXDP010000005.1 Salmonella enterica strain PNUSAS358100 SAMN35878067-rid18540953.denovo.05, whole genome shotgun sequence	149477..149914	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNXDP010000032.1 Salmonella enterica strain PNUSAS358100 SAMN35878067-rid18540953.guided.28, whole genome shotgun sequence	4420..4857	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXDP010000001.1	577861..578729	99.425	870	0						
GCA_032752875.1_PDT001787708.1_genomic.fna	Salmonella_enterica	0.521	480.953 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXDV010000001.1 Salmonella enterica strain PNUSAS358094 SAMN35877946-rid18540133.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXDV010000024.1 Salmonella enterica strain PNUSAS358094 SAMN35877946-rid18540133.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXDV010000016.1 Salmonella enterica strain PNUSAS358094 SAMN35877946-rid18540133.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNXDV010000017.1 Salmonella enterica strain PNUSAS358094 SAMN35877946-rid18540133.denovo.20, whole genome shotgun sequence	3405..3666																																																avrA	ABNXDV010000002.1	553453..554322	99.54	870	0						
GCA_032752995.1_PDT001787701.1_genomic.fna	Salmonella_enterica	0.5222	508.41 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXEC010000001.1 Salmonella enterica strain PNUSAS358071 SAMN35877634-rid18540083.denovo.01, whole genome shotgun sequence	836611..837048	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXEC010000026.1 Salmonella enterica strain PNUSAS358071 SAMN35877634-rid18540083.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXEC010000002.1	146984..147853	98.966	870	0						
GCA_032753055.1_PDT001787699.1_genomic.fna	Salmonella_enterica	0.5221	255.146 KB	7	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXED010000001.1 Salmonella enterica strain PNUSAS358086 SAMN35877878-rid18540063.denovo.01, whole genome shotgun sequence	145244..145681	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNXED010000045.1 Salmonella enterica strain PNUSAS358086 SAMN35877878-rid18540063.guided.31, whole genome shotgun sequence	5557..5994	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXED010000011.1	39349..40218	99.655	870	0						
GCA_032753095.1_PDT001787685.1_genomic.fna	Salmonella_enterica	0.5217	396.02 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNXER010000010.1 Salmonella enterica strain PNUSAS358091 SAMN35877881-rid18539953.denovo.10, whole genome shotgun sequence	70815..71252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNXER010000032.1 Salmonella enterica strain PNUSAS358091 SAMN35877881-rid18539953.guided.24, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXER010000002.1	95581..96450	98.966	870	0						
GCA_032753135.1_PDT001787697.1_genomic.fna	Salmonella_enterica	0.5211	489.739 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXEF010000001.1 Salmonella enterica strain PNUSAS358075 SAMN35877637-rid18540043.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXEF010000029.1 Salmonella enterica strain PNUSAS358075 SAMN35877637-rid18540043.guided.16, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXEF010000019.1 Salmonella enterica strain PNUSAS358075 SAMN35877637-rid18540043.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNXEF010000020.1 Salmonella enterica strain PNUSAS358075 SAMN35877637-rid18540043.denovo.23, whole genome shotgun sequence	3402..3663																																																avrA	ABNXEF010000002.1	552782..553651	99.54	870	0						
GCA_032753155.1_PDT001787696.1_genomic.fna	Salmonella_enterica	0.521	455.615 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXEH010000005.1 Salmonella enterica strain PNUSAS358092 SAMN35877879-rid18538943.denovo.05, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXEH010000034.1 Salmonella enterica strain PNUSAS358092 SAMN35877879-rid18538943.guided.20, whole genome shotgun sequence	11373..11810	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXEH010000019.1 Salmonella enterica strain PNUSAS358092 SAMN35877879-rid18538943.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNXEH010000021.1 Salmonella enterica strain PNUSAS358092 SAMN35877879-rid18538943.denovo.24, whole genome shotgun sequence	3436..3697																																																avrA	ABNXEH010000001.1	585031..585900	99.54	870	0						
GCA_032753195.1_PDT001787698.1_genomic.fna	Salmonella_enterica	0.5221	274.006 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNXEE010000011.1 Salmonella enterica strain PNUSAS358090 SAMN35877876-rid18540053.denovo.11, whole genome shotgun sequence	70815..71252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNXEE010000035.1 Salmonella enterica strain PNUSAS358090 SAMN35877876-rid18540053.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXEE010000001.1	94228..95097	98.966	870	0						
GCA_032753215.1_PDT001787694.1_genomic.fna	Salmonella_enterica	0.5196	240.083 KB	7	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNXEJ010000001.1 Salmonella enterica strain PNUSAS358087 SAMN35877883-rid18540023.denovo.01, whole genome shotgun sequence	393000..393437	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNXEJ010000081.1 Salmonella enterica strain PNUSAS358087 SAMN35877883-rid18540023.guided.25, whole genome shotgun sequence	10105..10542	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNXEJ010000029.1 Salmonella enterica strain PNUSAS358087 SAMN35877883-rid18540023.denovo.31, whole genome shotgun sequence	14756..15398	enterobacteriales	IncI1-I(Alpha)	98.6	143 / 142	ABNXEJ010000031.1 Salmonella enterica strain PNUSAS358087 SAMN35877883-rid18540023.denovo.33, whole genome shotgun sequence	1985..2127																																																avrA	ABNXEJ010000009.1	123948..124816	99.425	870	0						
GCA_032753235.1_PDT001787692.1_genomic.fna	Salmonella_enterica	0.5201	177.69 KB	9	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXEK010000010.1 Salmonella enterica strain PNUSAS358078 SAMN35877640-rid18540013.denovo.10, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXEK010000061.1 Salmonella enterica strain PNUSAS358078 SAMN35877640-rid18540013.guided.30, whole genome shotgun sequence	3758..4195	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNXEK010000025.1 Salmonella enterica strain PNUSAS358078 SAMN35877640-rid18540013.denovo.25, whole genome shotgun sequence	34957..35490																																																						avrA	ABNXEK010000002.1	39344..40210	98.966	870	0						
GCA_032753275.1_PDT001787691.1_genomic.fna	Salmonella_enterica	0.5206	286.008 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXEL010000010.1 Salmonella enterica strain PNUSAS358093 SAMN35877874-rid18540003.denovo.10, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXEL010000062.1 Salmonella enterica strain PNUSAS358093 SAMN35877874-rid18540003.guided.23, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNXEL010000020.1 Salmonella enterica strain PNUSAS358093 SAMN35877874-rid18540003.denovo.20, whole genome shotgun sequence	34958..35491																																																						avrA	ABNXEL010000003.1	39478..40344	98.966	870	0						
GCA_032753295.1_PDT001787689.1_genomic.fna	Salmonella_enterica	0.5216	332.1 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_746	3848	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_746	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNXEN010000004.1 Salmonella enterica strain PNUSAS358088 SAMN35877885-rid18539983.denovo.04, whole genome shotgun sequence	293513..293950	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNXEN010000040.1 Salmonella enterica strain PNUSAS358088 SAMN35877885-rid18539983.guided.27, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNXEN010000020.1 Salmonella enterica strain PNUSAS358088 SAMN35877885-rid18539983.denovo.20, whole genome shotgun sequence	2670..3203																																																						avrA	ABNXEN010000007.1	94167..95036	99.54	870	0						
GCA_032753315.1_PDT001787690.1_genomic.fna	Salmonella_enterica	0.5211	207.152 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXEM010000001.1 Salmonella enterica strain PNUSAS358089 SAMN35877875-rid18539993.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXEM010000050.1 Salmonella enterica strain PNUSAS358089 SAMN35877875-rid18539993.guided.27, whole genome shotgun sequence	35960..36397	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNXEM010000023.1 Salmonella enterica strain PNUSAS358089 SAMN35877875-rid18539993.denovo.23, whole genome shotgun sequence	2806..3339																																																						avrA	ABNXEM010000014.1	95168..96037	99.425	870	0						
GCA_032753335.1_PDT001787688.1_genomic.fna	Salmonella_enterica	0.5211	489.532 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXEP010000001.1 Salmonella enterica strain PNUSAS358069 SAMN35877629-rid18539973.denovo.01, whole genome shotgun sequence	293249..293686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXEP010000026.1 Salmonella enterica strain PNUSAS358069 SAMN35877629-rid18539973.guided.16, whole genome shotgun sequence	21776..22213	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	Col440I	94.74	114 / 114	ABNXEP010000021.1 Salmonella enterica strain PNUSAS358069 SAMN35877629-rid18539973.denovo.24, whole genome shotgun sequence	1981..2094	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXEP010000018.1 Salmonella enterica strain PNUSAS358069 SAMN35877629-rid18539973.denovo.20, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABNXEP010000019.1 Salmonella enterica strain PNUSAS358069 SAMN35877629-rid18539973.denovo.22, whole genome shotgun sequence	3413..3674																																									avrA	ABNXEP010000002.1	552942..553811	99.54	870	0						
GCA_032753835.1_PDT001787660.1_genomic.fna	Salmonella_enterica	0.5213	283.016 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXFO010000001.1 Salmonella enterica strain PNUSAS358073 SAMN35877638-rid18539753.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXFO010000032.1 Salmonella enterica strain PNUSAS358073 SAMN35877638-rid18539753.guided.23, whole genome shotgun sequence	8499..8936	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXFO010000023.1 Salmonella enterica strain PNUSAS358073 SAMN35877638-rid18539753.denovo.26, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNXFO010000025.1 Salmonella enterica strain PNUSAS358073 SAMN35877638-rid18539753.denovo.28, whole genome shotgun sequence	3402..3663																																																avrA	ABNXFO010000002.1	553077..553946	99.54	870	0						
GCA_032753855.1_PDT001787656.1_genomic.fna	Salmonella_enterica	0.5207	284.087 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXFR010000001.1 Salmonella enterica strain PNUSAS358067 SAMN35877628-rid18538903.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXFR010000033.1 Salmonella enterica strain PNUSAS358067 SAMN35877628-rid18538903.guided.21, whole genome shotgun sequence	10842..11279	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXFR010000021.1 Salmonella enterica strain PNUSAS358067 SAMN35877628-rid18538903.denovo.24, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNXFR010000023.1 Salmonella enterica strain PNUSAS358067 SAMN35877628-rid18538903.denovo.26, whole genome shotgun sequence	3268..3529		enterobacteriales	IncX1	98.93	374 / 374	ABNXFR010000017.1 Salmonella enterica strain PNUSAS358067 SAMN35877628-rid18538903.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABNXFR010000006.1	174992..175861	99.54	870	0						
GCA_032753875.1_PDT001787658.1_genomic.fna	Salmonella_enterica	0.5214	283.016 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXFQ010000001.1 Salmonella enterica strain PNUSAS358066 SAMN35877633-rid18539733.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXFQ010000031.1 Salmonella enterica strain PNUSAS358066 SAMN35877633-rid18539733.guided.21, whole genome shotgun sequence	20983..21420	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXFQ010000023.1 Salmonella enterica strain PNUSAS358066 SAMN35877633-rid18539733.denovo.25, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNXFQ010000025.1 Salmonella enterica strain PNUSAS358066 SAMN35877633-rid18539733.denovo.28, whole genome shotgun sequence	3389..3650																																																avrA	ABNXFQ010000014.1	39351..40220	99.54	870	0						
GCA_032753895.1_PDT001787657.1_genomic.fna	Salmonella_enterica	0.5216	203.794 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXFS010000001.1 Salmonella enterica strain PNUSAS358072 SAMN35877630-rid18539723.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNXFS010000027.1 Salmonella enterica strain PNUSAS358072 SAMN35877630-rid18539723.denovo.27, whole genome shotgun sequence	1320..2111	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNXFS010000027.1 Salmonella enterica strain PNUSAS358072 SAMN35877630-rid18539723.denovo.27, whole genome shotgun sequence	1320..2111	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNXFS010000053.1 Salmonella enterica strain PNUSAS358072 SAMN35877630-rid18539723.guided.28, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNXFS010000053.1 Salmonella enterica strain PNUSAS358072 SAMN35877630-rid18539723.guided.28, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNXFS010000055.1 Salmonella enterica strain PNUSAS358072 SAMN35877630-rid18539723.guided.35, whole genome shotgun sequence	12387..12824	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNXFS010000027.1 Salmonella enterica strain PNUSAS358072 SAMN35877630-rid18539723.denovo.27, whole genome shotgun sequence	2616..3455	Sulfamethoxazole	U12338	sul1	100	840/840	ABNXFS010000053.1 Salmonella enterica strain PNUSAS358072 SAMN35877630-rid18539723.guided.28, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNXFS010000027.1 Salmonella enterica strain PNUSAS358072 SAMN35877630-rid18539723.denovo.27, whole genome shotgun sequence	15972..17171	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNXFS010000053.1 Salmonella enterica strain PNUSAS358072 SAMN35877630-rid18539723.guided.28, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNXFS010000032.1 Salmonella enterica strain PNUSAS358072 SAMN35877630-rid18539723.denovo.34, whole genome shotgun sequence	9109..9668																																																						avrA	ABNXFS010000003.1	39430..40299	99.655	870	0						
GCA_032753915.1_PDT001787659.1_genomic.fna	Salmonella_enterica	0.5217	438.445 KB	5	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXFP010000010.1 Salmonella enterica strain PNUSAS358070 SAMN35877631-rid18539743.denovo.10, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXFP010000033.1 Salmonella enterica strain PNUSAS358070 SAMN35877631-rid18539743.guided.25, whole genome shotgun sequence	13364..13801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032753935.1_PDT001787654.1_genomic.fna	Salmonella_enterica	0.522	396.478 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXFU010000002.1 Salmonella enterica strain PNUSAS358076 SAMN35877635-rid18538893.denovo.02, whole genome shotgun sequence	177319..177756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXFU010000031.1 Salmonella enterica strain PNUSAS358076 SAMN35877635-rid18538893.guided.23, whole genome shotgun sequence	8093..8530	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXFU010000001.1	518383..519252	99.77	870	0						
GCA_032753955.1_PDT001787655.1_genomic.fna	Salmonella_enterica	0.5207	414.571 KB	4	aroC_5,dnaN_75,hemD_8,hisD_96,purE_39,sucA_146,thrA_97	443	35:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_75	hemD	100	100	hemD_8	hisD	100	100	hisD_96	purE	100	100	purE_39	sucA	100	100	sucA_146	thrA	100	100	thrA_97	35	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Monschaui		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXFT010000001.1 Salmonella enterica strain PNUSAS358068 SAMN35877632-rid18539713.denovo.01, whole genome shotgun sequence	491665..492102	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXFT010000029.1 Salmonella enterica strain PNUSAS358068 SAMN35877632-rid18539713.guided.18, whole genome shotgun sequence	16433..16870	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNXFT010000013.1 Salmonella enterica strain PNUSAS358068 SAMN35877632-rid18539713.denovo.13, whole genome shotgun sequence	74996..75137																																																																	
GCA_032753975.1_PDT001787653.1_genomic.fna	Salmonella_enterica	0.5214	476.57 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXFV010000001.1 Salmonella enterica strain PNUSAS358074 SAMN35877636-rid18540883.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXFV010000034.1 Salmonella enterica strain PNUSAS358074 SAMN35877636-rid18540883.guided.23, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXFV010000022.1 Salmonella enterica strain PNUSAS358074 SAMN35877636-rid18540883.denovo.24, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNXFV010000024.1 Salmonella enterica strain PNUSAS358074 SAMN35877636-rid18540883.denovo.27, whole genome shotgun sequence	3402..3663																																																avrA	ABNXFV010000002.1	506088..506957	99.54	870	0						
GCA_032753995.1_PDT001787651.1_genomic.fna	Salmonella_enterica	0.521	283.934 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXFX010000001.1 Salmonella enterica strain PNUSAS358077 SAMN35877641-rid18539693.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXFX010000030.1 Salmonella enterica strain PNUSAS358077 SAMN35877641-rid18539693.guided.20, whole genome shotgun sequence	3411..3848	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNXFX010000025.1 Salmonella enterica strain PNUSAS358077 SAMN35877641-rid18539693.denovo.28, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXFX010000020.1 Salmonella enterica strain PNUSAS358077 SAMN35877641-rid18539693.denovo.23, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABNXFX010000021.1 Salmonella enterica strain PNUSAS358077 SAMN35877641-rid18539693.denovo.24, whole genome shotgun sequence	3397..3658																																									avrA	ABNXFX010000002.1	553438..554307	99.54	870	0						
GCA_032754055.1_PDT001787650.1_genomic.fna	Salmonella_enterica	0.5211	532.929 KB	4	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNXFY010000003.1 Salmonella enterica strain PNUSAS358079 SAMN35877639-rid18539683.denovo.03, whole genome shotgun sequence	393771..394208	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNXFY010000034.1 Salmonella enterica strain PNUSAS358079 SAMN35877639-rid18539683.guided.19, whole genome shotgun sequence	39878..40315	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXFY010000001.1	545038..545906	99.655	869	0						
GCA_032754075.1_PDT001787646.1_genomic.fna	Salmonella_enterica	0.5232	351.211 KB	5	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNXGB010000003.1 Salmonella enterica strain FDA_FNW2585 SAMN35777875-rid18539643.denovo.03, whole genome shotgun sequence	378504..378941	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNXGB010000040.1 Salmonella enterica strain FDA_FNW2585 SAMN35777875-rid18539643.guided.25, whole genome shotgun sequence	15884..16321	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.91	132 / 131	ABNXGB010000027.1 Salmonella enterica strain FDA_FNW2585 SAMN35777875-rid18539643.denovo.30, whole genome shotgun sequence	5384..5514	enterobacteriales	Col(pHAD28)	93.97	116 / 131	ABNXGB010000028.1 Salmonella enterica strain FDA_FNW2585 SAMN35777875-rid18539643.denovo.31, whole genome shotgun sequence	5293..5408		enterobacteriales	Col(pHAD28)	92.37	118 / 131	ABNXGB010000031.1 Salmonella enterica strain FDA_FNW2585 SAMN35777875-rid18539643.denovo.34, whole genome shotgun sequence	2162..2279																																									avrA	ABNXGB010000009.1	145338..146207	99.425	870	0						
GCA_032755895.1_PDT001779207.1_genomic.fna	Salmonella_enterica	0.5209	405.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXGQ010000001.1 Salmonella enterica strain PNUSAS356007 SAMN35732868-rid18781553.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXGQ010000027.1 Salmonella enterica strain PNUSAS356007 SAMN35732868-rid18781553.guided.15, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXGQ010000019.1 Salmonella enterica strain PNUSAS356007 SAMN35732868-rid18781553.denovo.22, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNXGQ010000021.1 Salmonella enterica strain PNUSAS356007 SAMN35732868-rid18781553.denovo.24, whole genome shotgun sequence	3402..3663																																																avrA	ABNXGQ010000002.1	553635..554504	99.54	870	0						
GCA_032755915.1_PDT001779203.1_genomic.fna	Salmonella_enterica	0.5203	309.987 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	5	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,floR,floR,floR,qnrS1,qnrS1,tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXGR010000001.1 Salmonella enterica strain PNUSAS355999 SAMN35732866-rid18781543.denovo.01, whole genome shotgun sequence	486107..486544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXGR010000044.1 Salmonella enterica strain PNUSAS355999 SAMN35732866-rid18781543.guided.23, whole genome shotgun sequence	18092..18529	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNXGR010000007.1 Salmonella enterica strain PNUSAS355999 SAMN35732866-rid18781543.denovo.07, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNXGR010000046.1 Salmonella enterica strain PNUSAS355999 SAMN35732866-rid18781543.guided.31, whole genome shotgun sequence	6430..6852	Fosfomycin	LAPJ01000014	floR	98.19	1214/1215	ABNXGR010000028.1 Salmonella enterica strain PNUSAS355999 SAMN35732866-rid18781543.denovo.30, whole genome shotgun sequence	8664..9877	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNXGR010000049.1 Salmonella enterica strain PNUSAS355999 SAMN35732866-rid18781543.guided.36, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	floR	98.77	1141/1215	ABNXGR010000050.1 Salmonella enterica strain PNUSAS355999 SAMN35732866-rid18781543.guided.37, whole genome shotgun sequence	2477..3617	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNXGR010000028.1 Salmonella enterica strain PNUSAS355999 SAMN35732866-rid18781543.denovo.30, whole genome shotgun sequence	1026..1682	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNXGR010000047.1 Salmonella enterica strain PNUSAS355999 SAMN35732866-rid18781543.guided.32, whole genome shotgun sequence	1067..1723	Ciprofloxacin	AB187515	tet(A)	100	1275/1275	ABNXGR010000028.1 Salmonella enterica strain PNUSAS355999 SAMN35732866-rid18781543.denovo.30, whole genome shotgun sequence	6789..8063	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNXGR010000047.1 Salmonella enterica strain PNUSAS355999 SAMN35732866-rid18781543.guided.32, whole genome shotgun sequence	6830..8104	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																											parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNXGR010000027.1 Salmonella enterica strain PNUSAS355999 SAMN35732866-rid18781543.denovo.29, whole genome shotgun sequence	8313..8563																																																						avrA	ABNXGR010000002.1	151209..152078	99.195	870	0						
GCA_032755935.1_PDT001779202.1_genomic.fna	Salmonella_enterica	0.5212	406.453 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXGT010000001.1 Salmonella enterica strain PNUSAS356002 SAMN35732865-rid18781533.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXGT010000027.1 Salmonella enterica strain PNUSAS356002 SAMN35732865-rid18781533.guided.18, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXGT010000017.1 Salmonella enterica strain PNUSAS356002 SAMN35732865-rid18781533.denovo.19, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABNXGT010000019.1 Salmonella enterica strain PNUSAS356002 SAMN35732865-rid18781533.denovo.22, whole genome shotgun sequence	3367..3628																																																avrA	ABNXGT010000002.1	553678..554547	99.54	870	0						
GCA_032755955.1_PDT001779201.1_genomic.fna	Salmonella_enterica	0.5225	449.087 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXGU010000001.1 Salmonella enterica strain PNUSAS356005 SAMN35732862-rid18781523.denovo.01, whole genome shotgun sequence	454798..455235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXGU010000025.1 Salmonella enterica strain PNUSAS356005 SAMN35732862-rid18781523.guided.16, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXGU010000002.1	146983..147852	98.966	870	0						
GCA_032756255.1_PDT001757865.1_genomic.fna	Salmonella_enterica	0.5225	217.783 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXHG010000001.1 Salmonella enterica strain PNUSAS351033 SAMN35347631-rid18797473.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXHG010000040.1 Salmonella enterica strain PNUSAS351033 SAMN35347631-rid18797473.guided.29, whole genome shotgun sequence	57..494	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXHG010000003.1	39430..40299	99.655	870	0						
GCA_032756315.1_PDT001757864.1_genomic.fna	Salmonella_enterica	0.5221	331.279 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXHH010000001.1 Salmonella enterica strain PNUSAS351042 SAMN35347624-rid18797463.denovo.01, whole genome shotgun sequence	681010..681447	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXHH010000031.1 Salmonella enterica strain PNUSAS351042 SAMN35347624-rid18797463.guided.24, whole genome shotgun sequence	4022..4459	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXHH010000002.1	515755..516624	99.77	870	0						
GCA_032756655.1_PDT001740049.1_genomic.fna	Salmonella_enterica	0.5212	222.832 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXHK010000003.1 Salmonella enterica strain PNUSAS349424 SAMN35155524-rid18797433.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXHK010000056.1 Salmonella enterica strain PNUSAS349424 SAMN35155524-rid18797433.guided.13, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNXHK010000027.1 Salmonella enterica strain PNUSAS349424 SAMN35155524-rid18797433.denovo.29, whole genome shotgun sequence	36050..36692	enterobacteriales	IncFII(S)	100	262 / 262	ABNXHK010000032.1 Salmonella enterica strain PNUSAS349424 SAMN35155524-rid18797433.denovo.34, whole genome shotgun sequence	29377..29638																																																avrA	ABNXHK010000004.1	174500..175368	100	869	0						
GCA_032756675.1_PDT001740055.1_genomic.fna	Salmonella_enterica	0.5222	717.066 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXHI010000002.1 Salmonella enterica strain PNUSAS346521 SAMN35155537-rid18797453.denovo.02, whole genome shotgun sequence	407873..408310	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNXHI010000019.1 Salmonella enterica strain PNUSAS346521 SAMN35155537-rid18797453.guided.14, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXHI010000003.1	561932..562802	99.656	871	0						
GCA_032756685.1_PDT001740054.1_genomic.fna	Salmonella_enterica	0.5214	479.1 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXHJ010000001.1 Salmonella enterica strain PNUSAS349387 SAMN35155340-rid18797443.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXHJ010000026.1 Salmonella enterica strain PNUSAS349387 SAMN35155340-rid18797443.guided.21, whole genome shotgun sequence	6207..6644	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXHJ010000018.1 Salmonella enterica strain PNUSAS349387 SAMN35155340-rid18797443.denovo.19, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNXHJ010000020.1 Salmonella enterica strain PNUSAS349387 SAMN35155340-rid18797443.denovo.23, whole genome shotgun sequence	3394..3655																																																avrA	ABNXHJ010000002.1	553547..554416	99.54	870	0						
GCA_032756755.1_PDT001737167.1_genomic.fna	Salmonella_enterica	0.5212	490.182 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXHL010000001.1 Salmonella enterica strain PNUSAS348692 SAMN35123910-rid18797423.denovo.01, whole genome shotgun sequence	815077..815514	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXHL010000027.1 Salmonella enterica strain PNUSAS348692 SAMN35123910-rid18797423.guided.19, whole genome shotgun sequence	294..731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	98.96	193 / 193	ABNXHL010000017.1 Salmonella enterica strain PNUSAS348692 SAMN35123910-rid18797423.denovo.20, whole genome shotgun sequence	805..997	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXHL010000011.1 Salmonella enterica strain PNUSAS348692 SAMN35123910-rid18797423.denovo.11, whole genome shotgun sequence	40530..41172		enterobacteriales	IncFII(S)	100	262 / 262	ABNXHL010000014.1 Salmonella enterica strain PNUSAS348692 SAMN35123910-rid18797423.denovo.15, whole genome shotgun sequence	3395..3656																																									avrA	ABNXHL010000002.1	553183..554052	99.54	870	0						
GCA_032756855.1_PDT001708344.1_genomic.fna	Salmonella_enterica	0.5198	428.925 KB	5	aroC_92,dnaN_125,hemD_78,hisD_128,purE_138,sucA_9,thrA_141	463	3,10:e,h:l,w	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_92	dnaN	100	100	dnaN_125	hemD	100	100	hemD_78	hisD	100	100	hisD_128	purE	100	100	purE_138	sucA	100	100	sucA_9	thrA	100	100	thrA_141	3,10	e,h	l,w	Salmonella enterica subspecies enterica (subspecies I)	Meleagridis		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNXHM010000002.1 Salmonella enterica strain PNUSAS345045 SAMN34385732-rid17830863.denovo.02, whole genome shotgun sequence	412529..412966	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNXHM010000039.1 Salmonella enterica strain PNUSAS345045 SAMN34385732-rid17830863.guided.20, whole genome shotgun sequence	13242..13679	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNXHM010000003.1 Salmonella enterica strain PNUSAS345045 SAMN34385732-rid17830863.denovo.03, whole genome shotgun sequence	158254..158676	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNXHM010000040.1 Salmonella enterica strain PNUSAS345045 SAMN34385732-rid17830863.guided.22, whole genome shotgun sequence	26407..26829	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXHM010000001.1	172232..173101	98.851	870	0						
GCA_032756875.1_PDT001707717.1_genomic.fna	Salmonella_enterica	0.5218	77.293 KB	22	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),Col(pHAD28),ColRNAI,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXHO010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309404 SAMN34411731-rid17823193.denovo.001, whole genome shotgun sequence	145368..145805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXHO010000144.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309404 SAMN34411731-rid17823193.guided.064, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNXHO010000036.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309404 SAMN34411731-rid17823193.denovo.036, whole genome shotgun sequence	14271..15416	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNXHO010000145.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309404 SAMN34411731-rid17823193.guided.072, whole genome shotgun sequence	10809..11954	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNXHO010000035.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309404 SAMN34411731-rid17823193.denovo.035, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNXHO010000148.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309404 SAMN34411731-rid17823193.guided.094, whole genome shotgun sequence	3336..4151	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNXHO010000035.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309404 SAMN34411731-rid17823193.denovo.035, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNXHO010000148.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309404 SAMN34411731-rid17823193.guided.094, whole genome shotgun sequence	6328..7527	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNXHO010000101.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309404 SAMN34411731-rid17823193.denovo.106, whole genome shotgun sequence	371..501	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNXHO010000102.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309404 SAMN34411731-rid17823193.denovo.107, whole genome shotgun sequence	3134..3264		enterobacteriales	ColRNAI	90.08	131 / 130	ABNXHO010000103.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309404 SAMN34411731-rid17823193.denovo.108, whole genome shotgun sequence	3010..3140		enterobacteriales	IncC	100	417 / 417	ABNXHO010000035.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309404 SAMN34411731-rid17823193.denovo.035, whole genome shotgun sequence	49076..49492																																		avrA	ABNXHO010000005.1	101020..101889	99.885	870	0						
GCA_032756915.1_PDT001707336.1_genomic.fna	Salmonella_enterica	0.523	89.455 KB	17	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXHQ010000002.1 Salmonella enterica subsp. enterica serovar London strain FSIS12321481 SAMN34406654-rid17819413.denovo.002, whole genome shotgun sequence	227222..227659	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXHQ010000108.1 Salmonella enterica subsp. enterica serovar London strain FSIS12321481 SAMN34406654-rid17819413.guided.036, whole genome shotgun sequence	44304..44741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNXHQ010000080.1 Salmonella enterica subsp. enterica serovar London strain FSIS12321481 SAMN34406654-rid17819413.denovo.083, whole genome shotgun sequence	557..687	enterobacteriales	ColRNAI	90.83	109 / 130	ABNXHQ010000074.1 Salmonella enterica subsp. enterica serovar London strain FSIS12321481 SAMN34406654-rid17819413.denovo.077, whole genome shotgun sequence	1016..1124																																																avrA	ABNXHQ010000022.1	35354..36223	99.425	870	0						
GCA_032756935.1_PDT001707633.1_genomic.fna	Salmonella_enterica	0.5222	92.827 KB	14	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXHP010000044.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321482 SAMN34406655-rid17821073.denovo.044, whole genome shotgun sequence	13262..13699	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXHP010000075.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321482 SAMN34406655-rid17821073.denovo.079, whole genome shotgun sequence	5974..6810	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNXHP010000075.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321482 SAMN34406655-rid17821073.denovo.079, whole genome shotgun sequence	6810..7612	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNXHP010000075.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321482 SAMN34406655-rid17821073.denovo.079, whole genome shotgun sequence	6810..7613	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNXHP010000075.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321482 SAMN34406655-rid17821073.denovo.079, whole genome shotgun sequence	6810..7613	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNXHP010000075.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321482 SAMN34406655-rid17821073.denovo.079, whole genome shotgun sequence	6810..7613	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNXHP010000106.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321482 SAMN34406655-rid17821073.guided.054, whole genome shotgun sequence	14172..14609	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXHP010000109.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321482 SAMN34406655-rid17821073.guided.078, whole genome shotgun sequence	1512..2348	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNXHP010000109.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321482 SAMN34406655-rid17821073.guided.078, whole genome shotgun sequence	710..1512	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNXHP010000109.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321482 SAMN34406655-rid17821073.guided.078, whole genome shotgun sequence	709..1512	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNXHP010000109.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321482 SAMN34406655-rid17821073.guided.078, whole genome shotgun sequence	709..1512	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNXHP010000109.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12321482 SAMN34406655-rid17821073.guided.078, whole genome shotgun sequence	709..1512	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXHP010000011.1	81332..82201	99.655	870	0						
GCA_032756975.1_PDT001693205.2_genomic.fna	Salmonella_enterica	0.5211	260.011 KB	5	aroC_39,dnaN_86,hemD_101,hisD_190,purE_169,sucA_105,thrA_619	2871	8:z10:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_39	dnaN	100	100	dnaN_86	hemD	100	100	hemD_101	hisD	100	100	hisD_190	purE	100	100	purE_169	sucA	100	100	sucA_105	thrA	100	100	thrA_619	8	z10	z6	Salmonella enterica subspecies enterica (subspecies I)	Molade or Wippra	The predicted serotypes share the same general formula: 8:z10:z6 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXHT010000001.1 Salmonella enterica strain PNUSAS343182 SAMN34247179-rid18762483.denovo.01, whole genome shotgun sequence	658613..659050	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXHT010000043.1 Salmonella enterica strain PNUSAS343182 SAMN34247179-rid18762483.guided.21, whole genome shotgun sequence	32906..33343	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032756995.1_PDT001707263.1_genomic.fna	Salmonella_enterica	0.5195	113.863 KB	15	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNXHS010000002.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12321457 SAMN34380001-rid17818683.denovo.002, whole genome shotgun sequence	225646..226083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNXHS010000120.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12321457 SAMN34380001-rid17818683.guided.037, whole genome shotgun sequence	31721..32158	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNXHS010000079.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12321457 SAMN34380001-rid17818683.denovo.082, whole genome shotgun sequence	2209..2339	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNXHS010000080.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12321457 SAMN34380001-rid17818683.denovo.083, whole genome shotgun sequence	557..687		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNXHS010000073.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12321457 SAMN34380001-rid17818683.denovo.076, whole genome shotgun sequence	4641..5174																																									avrA	ABNXHS010000038.1	39350..40219	99.54	870	0						
GCA_032757035.1_PDT001666614.2_genomic.fna	Salmonella_enterica	0.5205	309.652 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	5	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,floR,floR,qnrS1,qnrS1,tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXHU010000001.1 Salmonella enterica strain PNUSAS339147 SAMN33864908-rid18762473.denovo.01, whole genome shotgun sequence	486109..486546	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXHU010000046.1 Salmonella enterica strain PNUSAS339147 SAMN33864908-rid18762473.guided.25, whole genome shotgun sequence	10869..11306	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNXHU010000004.1 Salmonella enterica strain PNUSAS339147 SAMN33864908-rid18762473.denovo.04, whole genome shotgun sequence	17983..18405	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNXHU010000049.1 Salmonella enterica strain PNUSAS339147 SAMN33864908-rid18762473.guided.35, whole genome shotgun sequence	6419..6841	Fosfomycin	LAPJ01000014	floR	98.19	1214/1215	ABNXHU010000030.1 Salmonella enterica strain PNUSAS339147 SAMN33864908-rid18762473.denovo.33, whole genome shotgun sequence	8664..9877	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNXHU010000051.1 Salmonella enterica strain PNUSAS339147 SAMN33864908-rid18762473.guided.39, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNXHU010000030.1 Salmonella enterica strain PNUSAS339147 SAMN33864908-rid18762473.denovo.33, whole genome shotgun sequence	1026..1682	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNXHU010000050.1 Salmonella enterica strain PNUSAS339147 SAMN33864908-rid18762473.guided.37, whole genome shotgun sequence	916..1572	Ciprofloxacin	AB187515	tet(A)	100	1275/1275	ABNXHU010000030.1 Salmonella enterica strain PNUSAS339147 SAMN33864908-rid18762473.denovo.33, whole genome shotgun sequence	6789..8063	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNXHU010000052.1 Salmonella enterica strain PNUSAS339147 SAMN33864908-rid18762473.guided.42, whole genome shotgun sequence	1485..2759	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNXHU010000029.1 Salmonella enterica strain PNUSAS339147 SAMN33864908-rid18762473.denovo.31, whole genome shotgun sequence	8313..8563																																																						avrA	ABNXHU010000002.1	151209..152078	99.195	870	0						
GCA_032757055.1_PDT001666613.2_genomic.fna	Salmonella_enterica	0.5211	489.665 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXHW010000001.1 Salmonella enterica strain PNUSAS339149 SAMN33864910-rid18762463.denovo.01, whole genome shotgun sequence	481578..482015	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXHW010000030.1 Salmonella enterica strain PNUSAS339149 SAMN33864910-rid18762463.guided.15, whole genome shotgun sequence	32389..32826	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXHW010000018.1 Salmonella enterica strain PNUSAS339149 SAMN33864910-rid18762463.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNXHW010000019.1 Salmonella enterica strain PNUSAS339149 SAMN33864910-rid18762463.denovo.22, whole genome shotgun sequence	3410..3671																																																avrA	ABNXHW010000002.1	584142..585011	99.54	870	0						
GCA_032757075.1_PDT001666615.2_genomic.fna	Salmonella_enterica	0.5214	325.662 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXHV010000001.1 Salmonella enterica strain PNUSAS339146 SAMN33864909-rid18762103.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXHV010000032.1 Salmonella enterica strain PNUSAS339146 SAMN33864909-rid18762103.guided.18, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXHV010000021.1 Salmonella enterica strain PNUSAS339146 SAMN33864909-rid18762103.denovo.24, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNXHV010000023.1 Salmonella enterica strain PNUSAS339146 SAMN33864909-rid18762103.denovo.26, whole genome shotgun sequence	3395..3656																																																avrA	ABNXHV010000002.1	553642..554511	99.54	870	0						
GCA_032757085.1_PDT001666612.2_genomic.fna	Salmonella_enterica	0.5211	375.833 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXHX010000001.1 Salmonella enterica strain PNUSAS339150 SAMN33864907-rid18762453.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXHX010000029.1 Salmonella enterica strain PNUSAS339150 SAMN33864907-rid18762453.guided.16, whole genome shotgun sequence	3994..4431	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXHX010000019.1 Salmonella enterica strain PNUSAS339150 SAMN33864907-rid18762453.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNXHX010000015.1 Salmonella enterica strain PNUSAS339150 SAMN33864907-rid18762453.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNXHX010000002.1	553635..554504	99.54	870	0						
GCA_032757115.1_PDT001666611.2_genomic.fna	Salmonella_enterica	0.5202	302.821 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXHZ010000001.1 Salmonella enterica strain PNUSAS339151 SAMN33864905-rid18762443.denovo.01, whole genome shotgun sequence	486109..486546	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXHZ010000041.1 Salmonella enterica strain PNUSAS339151 SAMN33864905-rid18762443.guided.26, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNXHZ010000006.1 Salmonella enterica strain PNUSAS339151 SAMN33864905-rid18762443.denovo.06, whole genome shotgun sequence	17974..18396	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNXHZ010000042.1 Salmonella enterica strain PNUSAS339151 SAMN33864905-rid18762443.guided.28, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXHZ010000002.1	151209..152078	99.195	870	0						
GCA_032757155.1_PDT001666610.2_genomic.fna	Salmonella_enterica	0.5214	219.383 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXHY010000001.1 Salmonella enterica strain PNUSAS339148 SAMN33864906-rid18762093.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXHY010000050.1 Salmonella enterica strain PNUSAS339148 SAMN33864906-rid18762093.guided.39, whole genome shotgun sequence	1755..2192	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXHY010000006.1	184453..185321	99.77	870	0						
GCA_032757555.1_PDT000226341.2_genomic.fna	Salmonella_enterica	0.5221	164.167 KB	8	aroC_81,dnaN_69,hemD_36,hisD_12,purE_68,sucA_12,thrA_17	203	7:y:1,5	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_69	hemD	100	100	hemD_36	hisD	100	100	hisD_12	purE	100	100	purE_68	sucA	100	100	sucA_12	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXIQ010000001.1 Salmonella enterica subsp. enterica serovar Bareilly strain FDA645825-4 SAMN02847006-rid5595063.denovo.01, whole genome shotgun sequence	484524..484961	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXIQ010000009.1	146665..147534	99.655	870	0						
GCA_032757575.1_PDT000120103.2_genomic.fna	Salmonella_enterica	0.5199	293.025 KB	6	aroC_140,dnaN_392,hemD_40,hisD_11,purE_140,sucA_180,thrA_18	1542	3,10:z10:1,5	1	aac(6')-Iaa	1	parC_p.T57S	2	IncFII(S),IncFII(SARC14)	aroC	100	100	aroC_140	dnaN	100	100	dnaN_392	hemD	100	100	hemD_40	hisD	100	100	hisD_11	purE	100	100	purE_140	sucA	100	100	sucA_180	thrA	100	100	thrA_18	3,10	z10	1,5	Salmonella enterica subspecies enterica (subspecies I)	Lexington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNXIR010000008.1 Salmonella enterica subsp. enterica serovar Lexington strain FDA135446 SAMN02843454-rid5229633.denovo.08, whole genome shotgun sequence	151621..152058	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	98.42	253 / 262	ABNXIR010000023.1 Salmonella enterica subsp. enterica serovar Lexington strain FDA135446 SAMN02843454-rid5229633.denovo.23, whole genome shotgun sequence	8448..8700	enterobacteriales	IncFII(SARC14)	100	445 / 445	ABNXIR010000023.1 Salmonella enterica subsp. enterica serovar Lexington strain FDA135446 SAMN02843454-rid5229633.denovo.23, whole genome shotgun sequence	8960..9404																																																											
GCA_032757595.1_PDT000092490.2_genomic.fna	Salmonella_enterica	0.5226	48.304 KB	33	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	5	aac(6')-Iaa,aph(3')-Ia,aadA12,aadA12,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul1,sul1,sul1	0		2	IncFIB(AP001918),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXIS010000068.1 Salmonella enterica subsp. enterica serovar Copenhagen strain FDA199856 SAMN02843712-rid5160323.denovo.068, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNXIS010000088.1 Salmonella enterica subsp. enterica serovar Copenhagen strain FDA199856 SAMN02843712-rid5160323.denovo.088, whole genome shotgun sequence	245..1060	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aadA12	100	792/792	ABNXIS010000088.1 Salmonella enterica subsp. enterica serovar Copenhagen strain FDA199856 SAMN02843712-rid5160323.denovo.088, whole genome shotgun sequence	12008..12799	Spectinomycin, Streptomycin	AY665771	aadA12	100	792/792	ABNXIS010000206.1 Salmonella enterica subsp. enterica serovar Copenhagen strain FDA199856 SAMN02843712-rid5160323.guided.145, whole genome shotgun sequence	2891..3682	Spectinomycin, Streptomycin	AY665771	aph(3')-Ia	100	816/816	ABNXIS010000207.1 Salmonella enterica subsp. enterica serovar Copenhagen strain FDA199856 SAMN02843712-rid5160323.guided.160, whole genome shotgun sequence	246..1061	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	blaTEM-1B	100	860/861	ABNXIS010000167.1 Salmonella enterica subsp. enterica serovar Copenhagen strain FDA199856 SAMN02843712-rid5160323.denovo.172, whole genome shotgun sequence	1..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNXIS010000208.1 Salmonella enterica subsp. enterica serovar Copenhagen strain FDA199856 SAMN02843712-rid5160323.guided.169, whole genome shotgun sequence	807..1667	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	ABNXIS010000088.1 Salmonella enterica subsp. enterica serovar Copenhagen strain FDA199856 SAMN02843712-rid5160323.denovo.088, whole genome shotgun sequence	10664..11503	Sulfamethoxazole	U12338	sul1	100	840/840	ABNXIS010000204.1 Salmonella enterica subsp. enterica serovar Copenhagen strain FDA199856 SAMN02843712-rid5160323.guided.130, whole genome shotgun sequence	1090..1929	Sulfamethoxazole	U12338	sul1	99.87	798/840	ABNXIS010000205.1 Salmonella enterica subsp. enterica serovar Copenhagen strain FDA199856 SAMN02843712-rid5160323.guided.140, whole genome shotgun sequence	1..798	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNXIS010000131.1 Salmonella enterica subsp. enterica serovar Copenhagen strain FDA199856 SAMN02843712-rid5160323.denovo.132, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII(S)	100	262 / 262	ABNXIS010000057.1 Salmonella enterica subsp. enterica serovar Copenhagen strain FDA199856 SAMN02843712-rid5160323.denovo.057, whole genome shotgun sequence	29484..29745																																																avrA	ABNXIS010000004.1	99846..100715	99.885	870	0						
GCA_032757615.1_PDT000087524.2_genomic.fna	Salmonella_enterica	0.5221	33.71 KB	41	aroC_487,dnaN_46,hemD_38,hisD_384,purE_403,sucA_284,thrA_504	2047	-:d:e,n,z15	1	aac(6')-Iaa	1	parC_p.T57S	3	IncFII(Cf),IncFII(S),IncFII(SARC14)	aroC	100	100	aroC_487	dnaN	100	100	dnaN_46	hemD	100	100	hemD_38	hisD	100	100	hisD_384	purE	100	100	purE_403	sucA	100	100	sucA_284	thrA	100	100	thrA_504	-	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:d:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXIT010000092.1 Salmonella enterica subsp. enterica serovar Teko strain FDA551406 SAMN02844721-rid5157743.denovo.092, whole genome shotgun sequence	11289..11726	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Cf)	90.69	247 / 258	ABNXIT010000023.1 Salmonella enterica subsp. enterica serovar Teko strain FDA551406 SAMN02844721-rid5157743.denovo.023, whole genome shotgun sequence	33586..33831	enterobacteriales	IncFII(S)	100	262 / 262	ABNXIT010000044.1 Salmonella enterica subsp. enterica serovar Teko strain FDA551406 SAMN02844721-rid5157743.denovo.044, whole genome shotgun sequence	3244..3505		enterobacteriales	IncFII(SARC14)	99.55	445 / 445	ABNXIT010000023.1 Salmonella enterica subsp. enterica serovar Teko strain FDA551406 SAMN02844721-rid5157743.denovo.023, whole genome shotgun sequence	34092..34536																																									avrA	ABNXIT010000066.1	24934..25803	99.655	870	0						
GCA_032757635.1_PDT000062635.2_genomic.fna	Salmonella_enterica	0.5192	263.114 KB	5	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXIV010000002.1 Salmonella enterica subsp. enterica serovar Miami strain FDA397935-4 RB SAMN02845854-rid5111113.denovo.02, whole genome shotgun sequence	594927..595364	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNXIV010000018.1 Salmonella enterica subsp. enterica serovar Miami strain FDA397935-4 RB SAMN02845854-rid5111113.denovo.18, whole genome shotgun sequence	34958..35491																																																						avrA	ABNXIV010000001.1	728168..729037	99.195	870	0						
GCA_032757655.1_PDT000065321.2_genomic.fna	Salmonella_enterica	0.5203	22.66 KB	66	aroC_417,dnaN_216,hemD_8,hisD_1730?,purE_1502?*,sucA_207,thrA_86	Unknown	30:i:l,w	1	aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col440II	aroC	100	100	aroC_417	dnaN	100	100	dnaN_216	hemD	100	100	hemD_8	hisD	100	78.4431137724551	hisD_1730?	purE	98.6301369863014	87.6506024096386	purE_1502?*	sucA	100	100	sucA_207	thrA	100	100	thrA_86	30	i	l,w	Salmonella enterica subspecies enterica (subspecies I)	Soerenga		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNXIU010000035.1 Salmonella enterica subsp. enterica serovar Soerenga strain FDA633181-9 isolate CFSAN019050 SAMN02918689-rid5115783.denovo.035, whole genome shotgun sequence	4046..4483	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNXIU010000174.1 Salmonella enterica subsp. enterica serovar Soerenga strain FDA633181-9 isolate CFSAN019050 SAMN02918689-rid5115783.denovo.174, whole genome shotgun sequence	1116..1246	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNXIU010000226.1 Salmonella enterica subsp. enterica serovar Soerenga strain FDA633181-9 isolate CFSAN019050 SAMN02918689-rid5115783.denovo.226, whole genome shotgun sequence	1125..1255		enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNXIU010000315.1 Salmonella enterica subsp. enterica serovar Soerenga strain FDA633181-9 isolate CFSAN019050 SAMN02918689-rid5115783.denovo.315, whole genome shotgun sequence	666..796		enterobacteriales	Col440II	97.87	282 / 282	ABNXIU010000174.1 Salmonella enterica subsp. enterica serovar Soerenga strain FDA633181-9 isolate CFSAN019050 SAMN02918689-rid5115783.denovo.174, whole genome shotgun sequence	1825..2106																																		avrA	ABNXIU010000010.1	11222..12091	99.655	870	0						
GCA_032757675.1_PDT000062620.2_genomic.fna	Salmonella_enterica	0.5214	376.373 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNXIW010000002.1 Salmonella enterica subsp. enterica serovar Hartford strain FDA397935-1 TH SAMN02845852-rid5110983.denovo.02, whole genome shotgun sequence	404425..404862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXIW010000003.1	359084..359953	99.655	870	0						
GCA_032757695.1_PDT000059714.2_genomic.fna	Salmonella_enterica	0.5216	124.615 KB	12	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXIX010000015.1 Salmonella enterica subsp. enterica serovar Saintpaul strain 12147 SAMN03480178-rid5100673.denovo.15, whole genome shotgun sequence	85947..86384	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																avrA	ABNXIX010000011.1	39349..40218	99.77	870	0						
GCA_032757715.1_PDT000058600.2_genomic.fna	Salmonella_enterica	0.5214	108.379 KB	14	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXIY010000006.1 Salmonella enterica subsp. enterica serovar Paratyphi A strain 9471 SAMN03478673-rid5090033.denovo.06, whole genome shotgun sequence	133588..134025	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNXIY010000061.1 Salmonella enterica subsp. enterica serovar Paratyphi A strain 9471 SAMN03478673-rid5090033.denovo.61, whole genome shotgun sequence	1604..1734																																																																	
GCA_032757735.1_PDT000058424.2_genomic.fna	Salmonella_enterica	0.5224	105.001 KB	15	aroC_81,dnaN_283,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	909	7:y:1,2	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_283	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,2	Salmonella enterica subspecies enterica (subspecies I)	Richmond		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNXIZ010000034.1 Salmonella enterica subsp. enterica serovar Richmond strain 3756 SAMN03478494-rid5088373.denovo.34, whole genome shotgun sequence	36174..36611	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXIZ010000009.1	39349..40218	99.31	870	0						
GCA_032757755.1_PDT000056785.2_genomic.fna	Salmonella_enterica	0.522	38.752 KB	38	aroC_1395?,dnaN_318,hemD_8,hisD_123,purE_214,sucA_115,thrA_120	Unknown	18:z4,z23:-	1	aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	1	Col(pHAD28)	aroC	100	79.6407185628742	aroC_1395?	dnaN	100	100	dnaN_318	hemD	100	100	hemD_8	hisD	100	100	hisD_123	purE	100	100	purE_214	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNXJB010000056.1 Salmonella enterica subsp. enterica serovar Chailey strain 14100 SAMN03477297-rid5072723.denovo.056, whole genome shotgun sequence	5125..5562	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNXJB010000192.1 Salmonella enterica subsp. enterica serovar Chailey strain 14100 SAMN03477297-rid5072723.denovo.192, whole genome shotgun sequence	53..183																																																						avrA	ABNXJB010000012.1	9340..10209	99.425	870	0						
GCA_032757775.1_PDT000057484.2_genomic.fna	Salmonella_enterica	0.5217	119.876 KB	13	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXJA010000001.1 Salmonella enterica subsp. enterica serovar Paratyphi A strain 9474 SAMN03477999-rid5079413.denovo.01, whole genome shotgun sequence	24180..24617	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032757795.1_PDT000056384.2_genomic.fna	Salmonella_enterica	0.5217	119.117 KB	13	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXJC010000001.1 Salmonella enterica subsp. enterica serovar Paratyphi A strain 9195 SAMN03476870-rid5068903.denovo.01, whole genome shotgun sequence	169374..169811	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032757805.1_PDT000055039.2_genomic.fna	Salmonella_enterica	0.5209	90.656 KB	18	aroC_81,dnaN_283,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	909	7:y:1,5	2	aac(6')-Iaa,blaTEM-1B,blaTEM-1B	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_81	dnaN	100	100	dnaN_283	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXJF010000003.1 Salmonella enterica subsp. enterica serovar Bareilly strain 9276 SAMN03475473-rid5055933.denovo.003, whole genome shotgun sequence	24908..25345	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNXJF010000020.1 Salmonella enterica subsp. enterica serovar Bareilly strain 9276 SAMN03475473-rid5055933.denovo.020, whole genome shotgun sequence	14663..15523	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNXJF010000101.1 Salmonella enterica subsp. enterica serovar Bareilly strain 9276 SAMN03475473-rid5055933.guided.059, whole genome shotgun sequence	13482..14342	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNXJF010000020.1 Salmonella enterica subsp. enterica serovar Bareilly strain 9276 SAMN03475473-rid5055933.denovo.020, whole genome shotgun sequence	25736..25877	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNXJF010000101.1 Salmonella enterica subsp. enterica serovar Bareilly strain 9276 SAMN03475473-rid5055933.guided.059, whole genome shotgun sequence	3128..3269																																																avrA	ABNXJF010000001.1	39349..40218	99.31	870	0						
GCA_032757835.1_PDT000052283.2_genomic.fna	Salmonella_enterica	0.5222	295.916 KB	7	aroC_341,dnaN_11,hemD_8,hisD_404,purE_61,sucA_161,thrA_341	1291	18:z4,z23:-	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_341	dnaN	100	100	dnaN_11	hemD	100	100	hemD_8	hisD	100	100	hisD_404	purE	100	100	purE_61	sucA	100	100	sucA_161	thrA	100	100	thrA_341	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNXJG010000001.1 Salmonella enterica subsp. enterica serovar Cerro strain VA-WGS-00412 SAMN03431307-rid5032163.denovo.01, whole genome shotgun sequence	80095..80532	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXJG010000008.1	94379..95248	98.966	870	0						
GCA_032757855.1_PDT000055485.2_genomic.fna	Salmonella_enterica	0.5183	84.885 KB	19	aroC_199,dnaN_4,hemD_43,hisD_128,purE_6,sucA_9,thrA_182	1997	30:z38:-	1	aac(6')-Iaa	1	parC_p.T57S	2	Col440II,IncFII(p96A)	aroC	100	100	aroC_199	dnaN	100	100	dnaN_4	hemD	100	100	hemD_43	hisD	100	100	hisD_128	purE	100	100	purE_6	sucA	100	100	sucA_9	thrA	100	100	thrA_182	30	z38	-	Salmonella enterica subspecies enterica (subspecies I)	Ago		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNXJD010000035.1 Salmonella enterica subsp. enterica serovar Ago strain 3766 SAMN03475950-rid5060253.denovo.035, whole genome shotgun sequence	12362..12799	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440II	97.16	282 / 282	ABNXJD010000084.1 Salmonella enterica subsp. enterica serovar Ago strain 3766 SAMN03475950-rid5060253.denovo.084, whole genome shotgun sequence	5136..5417	enterobacteriales	IncFII(p96A)	99.06	534 / 534	ABNXJD010000039.1 Salmonella enterica subsp. enterica serovar Ago strain 3766 SAMN03475950-rid5060253.denovo.039, whole genome shotgun sequence	557..1090																																																avrA	ABNXJD010000010.1	39349..40218	99.655	870	0						
GCA_032757865.1_PDT000055095.2_genomic.fna	Salmonella_enterica	0.5222	63.041 KB	26	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	5	aph(3'')-Ib,aph(6)-Id,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1C,blaTEM-1C,sul2,sul2	1	parC_p.T57S	1	IncB/O/K/Z	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aph(3'')-Ib	100	804/804	ABNXJE010000011.1 Salmonella enterica subsp. enterica serovar Sandiego strain 6445 SAMN03475529-rid5056483.denovo.011, whole genome shotgun sequence	6994..7797	Streptomycin	AF321551	aph(6)-Id	100	733/837	ABNXJE010000011.1 Salmonella enterica subsp. enterica serovar Sandiego strain 6445 SAMN03475529-rid5056483.denovo.011, whole genome shotgun sequence	12856..13588	Streptomycin	M28829	aac(6')-Iaa	97.26	438/438	ABNXJE010000036.1 Salmonella enterica subsp. enterica serovar Sandiego strain 6445 SAMN03475529-rid5056483.denovo.036, whole genome shotgun sequence	38353..38790	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	733/837	ABNXJE010000149.1 Salmonella enterica subsp. enterica serovar Sandiego strain 6445 SAMN03475529-rid5056483.guided.096, whole genome shotgun sequence	39..771	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXJE010000150.1 Salmonella enterica subsp. enterica serovar Sandiego strain 6445 SAMN03475529-rid5056483.guided.102, whole genome shotgun sequence	5220..6023	Streptomycin	AF321551	blaTEM-1C	100	861/861	ABNXJE010000011.1 Salmonella enterica subsp. enterica serovar Sandiego strain 6445 SAMN03475529-rid5056483.denovo.011, whole genome shotgun sequence	8053..8913	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1C	100	861/861	ABNXJE010000151.1 Salmonella enterica subsp. enterica serovar Sandiego strain 6445 SAMN03475529-rid5056483.guided.109, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	sul2	100	816/816	ABNXJE010000011.1 Salmonella enterica subsp. enterica serovar Sandiego strain 6445 SAMN03475529-rid5056483.denovo.011, whole genome shotgun sequence	6118..6933	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNXJE010000150.1 Salmonella enterica subsp. enterica serovar Sandiego strain 6445 SAMN03475529-rid5056483.guided.102, whole genome shotgun sequence	4344..5159	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																									parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncB/O/K/Z	100	160 / 160	ABNXJE010000011.1 Salmonella enterica subsp. enterica serovar Sandiego strain 6445 SAMN03475529-rid5056483.denovo.011, whole genome shotgun sequence	44706..44865																																																																	
GCA_032757895.1_PDT000050244.2_genomic.fna	Salmonella_enterica	0.5207	412.751 KB	5	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	2	aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNXJI010000002.1 Salmonella enterica subsp. enterica serovar Rissen strain FDA503180-1 SAMN02846296-rid5025383.denovo.02, whole genome shotgun sequence	69247..69684	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNXJI010000037.1 Salmonella enterica subsp. enterica serovar Rissen strain FDA503180-1 SAMN02846296-rid5025383.denovo.38, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNXJI010000046.1 Salmonella enterica subsp. enterica serovar Rissen strain FDA503180-1 SAMN02846296-rid5025383.guided.37, whole genome shotgun sequence	1055..2254	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNXJI010000035.1 Salmonella enterica subsp. enterica serovar Rissen strain FDA503180-1 SAMN02846296-rid5025383.denovo.35, whole genome shotgun sequence	3134..3264																																																						avrA	ABNXJI010000012.1	99734..100603	99.195	870	0						
GCA_032757915.1_PDT000051878.2_genomic.fna	Salmonella_enterica	0.5198	77.457 KB	19	aroC_2,dnaN_13,hemD_23,hisD_127,purE_96,sucA_6,thrA_217	1051	-:k:1,5	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_13	hemD	100	100	hemD_23	hisD	100	100	hisD_127	purE	100	100	purE_96	sucA	100	100	sucA_6	thrA	100	100	thrA_217	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNXJH010000005.1 Salmonella enterica subsp. enterica serovar Champaign strain FDA592433 3-1 SAMN02846711-rid5029743.denovo.005, whole genome shotgun sequence	12466..12903	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXJH010000057.1	25031..25900	98.966	870	0						
GCA_032757935.1_PDT000049003.2_genomic.fna	Salmonella_enterica	0.522	323.101 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNXJJ010000001.1 Salmonella enterica subsp. enterica serovar Miami strain FDA277100-3 RMB SAMN02845443-rid4948693.denovo.01, whole genome shotgun sequence	519316..519753	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXJJ010000004.1	149882..150751	99.425	870	0						
GCA_032757955.1_PDT001941487.1_genomic.fna	Salmonella_enterica	0.5223	394.205 KB	3	aroC_81,dnaN_283,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	909	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_283	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXJP010000001.1 Salmonella enterica strain PNUSAS390248 SAMN37847801-rid19845933.denovo.01, whole genome shotgun sequence	470315..470752	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXJP010000027.1 Salmonella enterica strain PNUSAS390248 SAMN37847801-rid19845933.guided.18, whole genome shotgun sequence	3000..3437	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXJP010000002.1	606190..607059	99.31	870	0						
GCA_032757975.1_PDT001941485.1_genomic.fna	Salmonella_enterica	0.5217	373.07 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_524	2220	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_524	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXJN010000001.1 Salmonella enterica strain PNUSAS390242 SAMN37847798-rid19845913.denovo.01, whole genome shotgun sequence	498153..498590	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXJN010000039.1 Salmonella enterica strain PNUSAS390242 SAMN37847798-rid19845913.guided.27, whole genome shotgun sequence	2197..2634	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXJN010000009.1	140447..141316	99.54	870	0						
GCA_032757995.1_PDT001941486.1_genomic.fna	Salmonella_enterica	0.5203	396.296 KB	4	aroC_41,dnaN_42,hemD_299,hisD_58,purE_9,sucA_12,thrA_2	1606	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_299	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXJL010000001.1 Salmonella enterica strain PNUSAS390250 SAMN37847807-rid19845923.denovo.01, whole genome shotgun sequence	708029..708466	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXJL010000029.1 Salmonella enterica strain PNUSAS390250 SAMN37847807-rid19845923.guided.21, whole genome shotgun sequence	954..1391	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXJL010000006.1	102672..103540	99.31	870	0						
GCA_032758015.1_PDT001941483.1_genomic.fna	Salmonella_enterica	0.5214	383.991 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXJM010000001.1 Salmonella enterica strain PNUSAS390231 SAMN37847783-rid19845893.denovo.01, whole genome shotgun sequence	561490..561927	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXJM010000044.1 Salmonella enterica strain PNUSAS390231 SAMN37847783-rid19845893.guided.30, whole genome shotgun sequence	2529..2966	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXJM010000012.1	93876..94744	99.195	870	0						
GCA_032758055.1_PDT001941488.1_genomic.fna	Salmonella_enterica	0.5219	192.218 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_105	3631	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_105	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXJR010000001.1 Salmonella enterica strain PNUSAS392212 SAMN37848891-rid19845943.denovo.01, whole genome shotgun sequence	458353..458790	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXJR010000051.1 Salmonella enterica strain PNUSAS392212 SAMN37848891-rid19845943.guided.33, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNXJR010000021.1 Salmonella enterica strain PNUSAS392212 SAMN37848891-rid19845943.denovo.21, whole genome shotgun sequence	48406..49048	enterobacteriales	IncFII(S)	100	262 / 262	ABNXJR010000021.1 Salmonella enterica strain PNUSAS392212 SAMN37848891-rid19845943.denovo.21, whole genome shotgun sequence	64133..64394																																																avrA	ABNXJR010000003.1	145794..146663	99.885	870	0						
GCA_032758135.1_PDT001941480.1_genomic.fna	Salmonella_enterica	0.5212	489.665 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXJU010000001.1 Salmonella enterica strain PNUSAS390247 SAMN37847789-rid19845863.denovo.01, whole genome shotgun sequence	293258..293695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXJU010000026.1 Salmonella enterica strain PNUSAS390247 SAMN37847789-rid19845863.guided.19, whole genome shotgun sequence	1563..2000	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXJU010000013.1 Salmonella enterica strain PNUSAS390247 SAMN37847789-rid19845863.denovo.13, whole genome shotgun sequence	48321..48963	enterobacteriales	IncFII(S)	100	262 / 262	ABNXJU010000013.1 Salmonella enterica strain PNUSAS390247 SAMN37847789-rid19845863.denovo.13, whole genome shotgun sequence	4068..4329																																																avrA	ABNXJU010000002.1	584148..585017	99.54	870	0						
GCA_032758155.1_PDT001941478.1_genomic.fna	Salmonella_enterica	0.5213	430.1 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXJY010000001.1 Salmonella enterica strain PNUSAS390243 SAMN37847795-rid19845843.denovo.01, whole genome shotgun sequence	561490..561927	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXJY010000038.1 Salmonella enterica strain PNUSAS390243 SAMN37847795-rid19845843.guided.25, whole genome shotgun sequence	1377..1814	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXJY010000010.1	181738..182606	99.195	870	0						
GCA_032758175.1_PDT001941477.1_genomic.fna	Salmonella_enterica	0.5207	255.93 KB	6	aroC_11,dnaN_10,hemD_25,hisD_13*,purE_10,sucA_35,thrA_4	126*	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	99.8003992015968	100	hisD_13*	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNXJX010000003.1 Salmonella enterica strain PNUSAS390227 SAMN37847777-rid19845833.denovo.03, whole genome shotgun sequence	280859..281296	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNXJX010000047.1 Salmonella enterica strain PNUSAS390227 SAMN37847777-rid19845833.guided.39, whole genome shotgun sequence	516..953	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNXJX010000014.1 Salmonella enterica strain PNUSAS390227 SAMN37847777-rid19845833.denovo.14, whole genome shotgun sequence	114826..115468																																																																	
GCA_032758195.1_PDT001941476.1_genomic.fna	Salmonella_enterica	0.5209	388.203 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXJV010000001.1 Salmonella enterica strain PNUSAS390234 SAMN37847786-rid19845823.denovo.01, whole genome shotgun sequence	414575..415012	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032758215.1_PDT001941475.1_genomic.fna	Salmonella_enterica	0.5206	366.978 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXJT010000001.1 Salmonella enterica strain PNUSAS390252 SAMN37847804-rid19845813.denovo.01, whole genome shotgun sequence	561489..561926	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.17	363/438	ABNXJT010000038.1 Salmonella enterica strain PNUSAS390252 SAMN37847804-rid19845813.guided.37, whole genome shotgun sequence	1..363	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXJT010000012.1	94851..95719	99.195	870	0						
GCA_032758235.1_PDT001941474.1_genomic.fna	Salmonella_enterica	0.5217	279.269 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_110,sucA_9,thrA_2	302	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_110	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXJW010000001.1 Salmonella enterica strain PNUSAS390235 SAMN37847785-rid19845803.denovo.01, whole genome shotgun sequence	207019..207456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXJW010000049.1 Salmonella enterica strain PNUSAS390235 SAMN37847785-rid19845803.guided.32, whole genome shotgun sequence	1433..1870	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNXJW010000017.1 Salmonella enterica strain PNUSAS390235 SAMN37847785-rid19845803.denovo.17, whole genome shotgun sequence	48415..49057	enterobacteriales	IncFII(S)	100	262 / 262	ABNXJW010000017.1 Salmonella enterica strain PNUSAS390235 SAMN37847785-rid19845803.denovo.17, whole genome shotgun sequence	64142..64403																																																avrA	ABNXJW010000007.1	98459..99328	99.885	870	0						
GCA_032758255.1_PDT001941473.1_genomic.fna	Salmonella_enterica	0.5211	417.902 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXJZ010000001.1 Salmonella enterica strain PNUSAS390249 SAMN37847803-rid19845793.denovo.01, whole genome shotgun sequence	865406..865843	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXJZ010000038.1 Salmonella enterica strain PNUSAS390249 SAMN37847803-rid19845793.guided.27, whole genome shotgun sequence	471..908	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNXJZ010000023.1 Salmonella enterica strain PNUSAS390249 SAMN37847803-rid19845793.denovo.24, whole genome shotgun sequence	2597..2727																																																						avrA	ABNXJZ010000006.1	93871..94740	99.425	870	0						
GCA_032758275.1_PDT001941472.1_genomic.fna	Salmonella_enterica	0.5217	321.415 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_524	2220	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_524	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXKA010000001.1 Salmonella enterica strain PNUSAS390236 SAMN37847788-rid19845783.denovo.01, whole genome shotgun sequence	498145..498582	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXKA010000038.1 Salmonella enterica strain PNUSAS390236 SAMN37847788-rid19845783.guided.29, whole genome shotgun sequence	231..668	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXKA010000008.1	140447..141316	99.54	870	0						
GCA_032758295.1_PDT001941471.1_genomic.fna	Salmonella_enterica	0.5207	645.031 KB	2	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXKE010000001.1 Salmonella enterica strain PNUSAS390241 SAMN37847806-rid19845773.denovo.01, whole genome shotgun sequence	1320588..1321025	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXKE010000025.1 Salmonella enterica strain PNUSAS390241 SAMN37847806-rid19845773.guided.19, whole genome shotgun sequence	742..1179	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXKE010000003.1	407408..408277	99.31	870	0						
GCA_032758315.1_PDT001941469.1_genomic.fna	Salmonella_enterica	0.5224	761.734 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXKC010000002.1 Salmonella enterica strain PNUSAS390230 SAMN37847782-rid19845753.denovo.02, whole genome shotgun sequence	481936..482373	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNXKC010000024.1 Salmonella enterica strain PNUSAS390230 SAMN37847782-rid19845753.guided.15, whole genome shotgun sequence	2405..2842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXKC010000004.1	553743..554612	99.77	870	0						
GCA_032758375.1_PDT001941466.1_genomic.fna	Salmonella_enterica	0.522	609.82 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXKF010000002.1 Salmonella enterica strain PNUSAS390239 SAMN37847794-rid19845723.denovo.02, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNXKF010000051.1 Salmonella enterica strain PNUSAS390239 SAMN37847794-rid19845723.guided.33, whole genome shotgun sequence	424..861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXKF010000007.1	94981..95850	99.655	870	0						
GCA_032758395.1_PDT001941465.1_genomic.fna	Salmonella_enterica	0.5213	489.659 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXKG010000001.1 Salmonella enterica strain PNUSAS390245 SAMN37847797-rid19845713.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXKG010000023.1 Salmonella enterica strain PNUSAS390245 SAMN37847797-rid19845713.guided.15, whole genome shotgun sequence	7844..8281	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXKG010000011.1 Salmonella enterica strain PNUSAS390245 SAMN37847797-rid19845713.denovo.11, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	ABNXKG010000015.1 Salmonella enterica strain PNUSAS390245 SAMN37847797-rid19845713.denovo.17, whole genome shotgun sequence	3402..3663																																																avrA	ABNXKG010000002.1	552688..553557	99.54	870	0						
GCA_032758415.1_PDT001941464.1_genomic.fna	Salmonella_enterica	0.5217	390.312 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_524	2220	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_524	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXKH010000001.1 Salmonella enterica strain PNUSAS390246 SAMN37847800-rid19845703.denovo.01, whole genome shotgun sequence	498633..499070	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXKH010000038.1 Salmonella enterica strain PNUSAS390246 SAMN37847800-rid19845703.guided.26, whole genome shotgun sequence	1842..2279	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXKH010000008.1	140447..141316	99.54	870	0						
GCA_032758455.1_PDT001941462.1_genomic.fna	Salmonella_enterica	0.5215	363.991 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXKK010000001.1 Salmonella enterica strain PNUSAS390254 SAMN37847808-rid19845683.denovo.01, whole genome shotgun sequence	318228..318665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXKK010000055.1 Salmonella enterica strain PNUSAS390254 SAMN37847808-rid19845683.guided.37, whole genome shotgun sequence	799..1236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXKK010000005.1	183119..183988	98.966	870	0						
GCA_032758475.1_PDT001941460.1_genomic.fna	Salmonella_enterica	0.5217	308.753 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXKL010000001.1 Salmonella enterica strain PNUSAS390244 SAMN37847799-rid19845663.denovo.01, whole genome shotgun sequence	43112..43549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXKL010000042.1 Salmonella enterica strain PNUSAS390244 SAMN37847799-rid19845663.guided.34, whole genome shotgun sequence	951..1388	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXKL010000002.1	120801..121670	99.425	870	0						
GCA_032758515.1_PDT001941459.1_genomic.fna	Salmonella_enterica	0.5207	526.473 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXKM010000001.1 Salmonella enterica strain PNUSAS390238 SAMN37847796-rid19845653.denovo.01, whole genome shotgun sequence	719031..719468	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXKM010000025.1 Salmonella enterica strain PNUSAS390238 SAMN37847796-rid19845653.guided.20, whole genome shotgun sequence	2314..2751	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXKM010000002.1	561325..562194	99.425	870	0						
GCA_032758535.1_PDT001941458.1_genomic.fna	Salmonella_enterica	0.5204	206.11 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa	1	gyrA_p.S83Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNXKN010000010.1 Salmonella enterica strain PNUSAS390251 SAMN37847802-rid19845643.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																																						
GCA_032758555.1_PDT001941457.1_genomic.fna	Salmonella_enterica	0.521	384.69 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNXKO010000001.1 Salmonella enterica strain PNUSAS390253 SAMN37847805-rid19845633.denovo.01, whole genome shotgun sequence	37964..38401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.39	435/438	ABNXKO010000040.1 Salmonella enterica strain PNUSAS390253 SAMN37847805-rid19845633.guided.34, whole genome shotgun sequence	1..435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXKO010000008.1	178479..179347	99.425	870	0						
GCA_032758575.1_PDT001941456.1_genomic.fna	Salmonella_enterica	0.5208	278.344 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	p0111	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXKP010000003.1 Salmonella enterica strain PNUSAS390233 SAMN37847784-rid19845623.denovo.03, whole genome shotgun sequence	62186..62623	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXKP010000036.1 Salmonella enterica strain PNUSAS390233 SAMN37847784-rid19845623.denovo.38, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXKP010000036.1 Salmonella enterica strain PNUSAS390233 SAMN37847784-rid19845623.denovo.38, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNXKP010000058.1 Salmonella enterica strain PNUSAS390233 SAMN37847784-rid19845623.guided.37, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXKP010000058.1 Salmonella enterica strain PNUSAS390233 SAMN37847784-rid19845623.guided.37, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNXKP010000059.1 Salmonella enterica strain PNUSAS390233 SAMN37847784-rid19845623.guided.40, whole genome shotgun sequence	2296..2733	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNXKP010000043.1 Salmonella enterica strain PNUSAS390233 SAMN37847784-rid19845623.denovo.49, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNXKP010000062.1 Salmonella enterica strain PNUSAS390233 SAMN37847784-rid19845623.guided.48, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNXKP010000036.1 Salmonella enterica strain PNUSAS390233 SAMN37847784-rid19845623.denovo.38, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNXKP010000058.1 Salmonella enterica strain PNUSAS390233 SAMN37847784-rid19845623.guided.37, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNXKP010000031.1 Salmonella enterica strain PNUSAS390233 SAMN37847784-rid19845623.denovo.31, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNXKP010000061.1 Salmonella enterica strain PNUSAS390233 SAMN37847784-rid19845623.guided.46, whole genome shotgun sequence	1048..2253	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	p0111	99.55	885 / 885	ABNXKP010000020.1 Salmonella enterica strain PNUSAS390233 SAMN37847784-rid19845623.denovo.20, whole genome shotgun sequence	33147..34031																																																						avrA	ABNXKP010000001.1	540741..541610	99.885	870	0						
GCA_032758615.1_PDT001941455.1_genomic.fna	Salmonella_enterica	0.5213	489.665 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXKQ010000001.1 Salmonella enterica strain PNUSAS390226 SAMN37847779-rid19845613.denovo.01, whole genome shotgun sequence	293258..293695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXKQ010000029.1 Salmonella enterica strain PNUSAS390226 SAMN37847779-rid19845613.guided.24, whole genome shotgun sequence	522..959	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABNXKQ010000030.1 Salmonella enterica strain PNUSAS390226 SAMN37847779-rid19845613.guided.25, whole genome shotgun sequence	522..959	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																							enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXKQ010000014.1 Salmonella enterica strain PNUSAS390226 SAMN37847779-rid19845613.denovo.14, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	ABNXKQ010000018.1 Salmonella enterica strain PNUSAS390226 SAMN37847779-rid19845613.denovo.18, whole genome shotgun sequence	3387..3648																																																avrA	ABNXKQ010000002.1	584126..584995	99.54	870	0						
GCA_032758635.1_PDT001941454.1_genomic.fna	Salmonella_enterica	0.5219	737.667 KB	3	aroC_50,dnaN_10,hemD_25,hisD_72,purE_10,sucA_13,thrA_4	414	9:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Eastbourne		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXKT010000002.1 Salmonella enterica strain PNUSAS390237 SAMN37847787-rid19845603.denovo.02, whole genome shotgun sequence	645692..646129	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXKT010000028.1 Salmonella enterica strain PNUSAS390237 SAMN37847787-rid19845603.guided.18, whole genome shotgun sequence	975..1412	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXKT010000004.1	94292..95161	99.31	870	0						
GCA_032758655.1_PDT001941452.1_genomic.fna	Salmonella_enterica	0.5221	273.329 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXKS010000003.1 Salmonella enterica strain PNUSAS390240 SAMN37847790-rid19845583.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXKS010000046.1 Salmonella enterica strain PNUSAS390240 SAMN37847790-rid19845583.guided.35, whole genome shotgun sequence	533..970	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNXKS010000016.1 Salmonella enterica strain PNUSAS390240 SAMN37847790-rid19845583.denovo.16, whole genome shotgun sequence	48450..49092	enterobacteriales	IncFII(S)	100	262 / 262	ABNXKS010000016.1 Salmonella enterica strain PNUSAS390240 SAMN37847790-rid19845583.denovo.16, whole genome shotgun sequence	64177..64438																																																avrA	ABNXKS010000007.1	98459..99327	100	869	0						
GCA_032758675.1_PDT001941453.1_genomic.fna	Salmonella_enterica	0.5229	390.15 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXKR010000001.1 Salmonella enterica strain PNUSAS390232 SAMN37847781-rid19845593.denovo.01, whole genome shotgun sequence	170009..170446	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXKR010000031.1 Salmonella enterica strain PNUSAS390232 SAMN37847781-rid19845593.guided.25, whole genome shotgun sequence	1530..1967	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032758755.1_PDT001941448.1_genomic.fna	Salmonella_enterica	0.5218	737.677 KB	2	aroC_50,dnaN_10,hemD_25,hisD_72,purE_10,sucA_13,thrA_4	414	9:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Eastbourne		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXKX010000001.1 Salmonella enterica strain PNUSAS390228 SAMN37847776-rid19845543.denovo.01, whole genome shotgun sequence	645692..646129	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXKX010000024.1 Salmonella enterica strain PNUSAS390228 SAMN37847776-rid19845543.guided.15, whole genome shotgun sequence	2266..2703	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXKX010000003.1	152397..153266	99.31	870	0						
GCA_032758775.1_PDT001941445.1_genomic.fna	Salmonella_enterica	0.521	279.77 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXLB010000001.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNXLB010000030.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.denovo.31, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNXLB010000030.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.denovo.31, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNXLB010000049.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.denovo.58, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXLB010000049.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.denovo.58, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNXLB010000062.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.guided.30, whole genome shotgun sequence	7689..8126	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNXLB010000067.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.guided.47, whole genome shotgun sequence	197..988	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNXLB010000068.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.guided.48, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNXLB010000070.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.guided.57, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXLB010000070.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.guided.57, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNXLB010000047.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.denovo.55, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNXLB010000071.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.guided.59, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABNXLB010000030.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.denovo.31, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNXLB010000039.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.denovo.44, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABNXLB010000067.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.guided.47, whole genome shotgun sequence	1250..2509	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNXLB010000068.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.guided.48, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNXLB010000069.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.guided.52, whole genome shotgun sequence	488..1701	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNXLB010000073.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.guided.63, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNXLB010000074.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.guided.64, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNXLB010000075.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.guided.65, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNXLB010000076.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.guided.66, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNXLB010000029.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.denovo.29, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNXLB010000030.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.denovo.31, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNXLB010000064.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.guided.35, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNXLB010000065.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.guided.39, whole genome shotgun sequence	2122..4041	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABNXLB010000030.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.denovo.31, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABNXLB010000066.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.guided.41, whole genome shotgun sequence	3534..4031	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																															enterobacteriales	Col156	94.81	154 / 154	ABNXLB010000034.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.denovo.37, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABNXLB010000041.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.denovo.46, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABNXLB010000048.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.denovo.56, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNXLB010000027.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.denovo.27, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNXLB010000021.1 Salmonella enterica strain PNUSAS392170 SAMN37847460-rid19845513.denovo.21, whole genome shotgun sequence	55745..56241																											avrA	ABNXLB010000002.1	508765..509634	99.885	870	0						
GCA_032758795.1_PDT001941443.1_genomic.fna	Salmonella_enterica	0.5221	194.669 KB	10	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXKZ010000007.1 Salmonella enterica strain PNUSAS392167 SAMN37847457-rid19845493.denovo.07, whole genome shotgun sequence	144410..144847	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXKZ010000054.1 Salmonella enterica strain PNUSAS392167 SAMN37847457-rid19845493.guided.50, whole genome shotgun sequence	327..764	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032758815.1_PDT001941444.1_genomic.fna	Salmonella_enterica	0.5211	466.425 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXLD010000002.1 Salmonella enterica strain PNUSAS392150 SAMN37847456-rid19845503.denovo.02, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXLD010000048.1 Salmonella enterica strain PNUSAS392150 SAMN37847456-rid19845503.guided.26, whole genome shotgun sequence	1004..1441	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXLD010000011.1	93870..94740	99.196	871	0						
GCA_032758835.1_PDT001941446.1_genomic.fna	Salmonella_enterica	0.5222	455.7 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXLA010000001.1 Salmonella enterica strain PNUSAS390225 SAMN37847778-rid19845523.denovo.01, whole genome shotgun sequence	383063..383500	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXLA010000011.1	93870..94739	99.195	870	0						
GCA_032758875.1_PDT001941441.1_genomic.fna	Salmonella_enterica	0.522	235.908 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXLE010000003.1 Salmonella enterica strain PNUSAS392163 SAMN37847462-rid19845473.denovo.03, whole genome shotgun sequence	151391..151828	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXLE010000044.1 Salmonella enterica strain PNUSAS392163 SAMN37847462-rid19845473.guided.31, whole genome shotgun sequence	8784..9221	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032758895.1_PDT001941442.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXLC010000001.1 Salmonella enterica strain PNUSAS392168 SAMN37847455-rid19845483.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXLC010000012.1 Salmonella enterica strain PNUSAS392168 SAMN37847455-rid19845483.denovo.12, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABNXLC010000016.1 Salmonella enterica strain PNUSAS392168 SAMN37847455-rid19845483.denovo.16, whole genome shotgun sequence	3385..3646																																																avrA	ABNXLC010000002.1	553574..554443	99.54	870	0						
GCA_032758915.1_PDT001941440.1_genomic.fna	Salmonella_enterica	0.5186	364.483 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXLF010000001.1 Salmonella enterica strain PNUSAS392164 SAMN37847461-rid19845463.denovo.01, whole genome shotgun sequence	486124..486561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXLF010000035.1 Salmonella enterica strain PNUSAS392164 SAMN37847461-rid19845463.guided.22, whole genome shotgun sequence	6130..6567	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNXLF010000003.1 Salmonella enterica strain PNUSAS392164 SAMN37847461-rid19845463.denovo.03, whole genome shotgun sequence	388915..389337	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNXLF010000036.1 Salmonella enterica strain PNUSAS392164 SAMN37847461-rid19845463.guided.27, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXLF010000006.1	122297..123166	99.195	870	0						
GCA_032758935.1_PDT001941439.1_genomic.fna	Salmonella_enterica	0.521	485.717 KB	3	aroC_41,dnaN_332,hemD_79,hisD_62,purE_28,sucA_14,thrA_96	1384	38:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_62	purE	100	100	purE_28	sucA	100	100	sucA_14	thrA	100	100	thrA_96	38	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Inverness		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNXLG010000001.1 Salmonella enterica strain PNUSAS392162 SAMN37847459-rid19845453.denovo.01, whole genome shotgun sequence	706987..707424	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNXLG010000031.1 Salmonella enterica strain PNUSAS392162 SAMN37847459-rid19845453.guided.23, whole genome shotgun sequence	2936..3373	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNXLG010000011.1 Salmonella enterica strain PNUSAS392162 SAMN37847459-rid19845453.denovo.11, whole genome shotgun sequence	109066..109708																																																						avrA	ABNXLG010000002.1	538517..539386	99.54	870	0						
GCA_032758955.1_PDT001941438.1_genomic.fna	Salmonella_enterica	0.521	485.96 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXLH010000003.1 Salmonella enterica strain PNUSAS392155 SAMN37847458-rid19845443.denovo.03, whole genome shotgun sequence	375990..376427	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXLH010000038.1 Salmonella enterica strain PNUSAS392155 SAMN37847458-rid19845443.guided.22, whole genome shotgun sequence	2252..2689	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXLH010000002.1	504152..505022	99.196	871	0						
GCA_032758975.1_PDT001941437.1_genomic.fna	Salmonella_enterica	0.522	202.296 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXLK010000008.1 Salmonella enterica strain PNUSAS392157 SAMN37847453-rid19845433.denovo.08, whole genome shotgun sequence	144279..144716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXLK010000048.1 Salmonella enterica strain PNUSAS392157 SAMN37847453-rid19845433.guided.43, whole genome shotgun sequence	331..768	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032758995.1_PDT001941436.1_genomic.fna	Salmonella_enterica	0.5232	397.893 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXLJ010000001.1 Salmonella enterica strain PNUSAS392161 SAMN37847454-rid19845423.denovo.01, whole genome shotgun sequence	80534..80971	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXLJ010000033.1 Salmonella enterica strain PNUSAS392161 SAMN37847454-rid19845423.guided.24, whole genome shotgun sequence	4302..4739	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXLJ010000003.1	149828..150697	99.655	870	0						
GCA_032759015.1_PDT001941435.1_genomic.fna	Salmonella_enterica	0.521	696.239 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	-:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	-	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:m,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXLI010000001.1 Salmonella enterica strain PNUSAS392171 SAMN37847419-rid19845413.denovo.01, whole genome shotgun sequence	627932..628369	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	351/438	ABNXLI010000021.1 Salmonella enterica strain PNUSAS392171 SAMN37847419-rid19845413.guided.17, whole genome shotgun sequence	1..351	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032759035.1_PDT001941433.1_genomic.fna	Salmonella_enterica	0.5208	607.048 KB	3	aroC_41,dnaN_42,hemD_299,hisD_58,purE_9,sucA_12,thrA_2	1606	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_299	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXLM010000001.1 Salmonella enterica strain PNUSAS392149 SAMN37847408-rid19845393.denovo.01, whole genome shotgun sequence	671680..672117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXLM010000048.1 Salmonella enterica strain PNUSAS392149 SAMN37847408-rid19845393.guided.38, whole genome shotgun sequence	815..1252	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNXLM010000020.1 Salmonella enterica strain PNUSAS392149 SAMN37847408-rid19845393.denovo.21, whole genome shotgun sequence	11446..12088																																																						avrA	ABNXLM010000004.1	139988..140856	99.31	870	0						
GCA_032759055.1_PDT001941434.1_genomic.fna	Salmonella_enterica	0.5221	465.971 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXLL010000001.1 Salmonella enterica strain PNUSAS392151 SAMN37847412-rid19845403.denovo.01, whole genome shotgun sequence	1370517..1370954	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXLL010000026.1 Salmonella enterica strain PNUSAS392151 SAMN37847412-rid19845403.guided.16, whole genome shotgun sequence	6792..7229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXLL010000009.1	93870..94740	99.196	871	0						
GCA_032759075.1_PDT001941432.1_genomic.fna	Salmonella_enterica	0.5219	521.958 KB	4	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNXLN010000003.1 Salmonella enterica strain PNUSAS392166 SAMN37847414-rid19845383.denovo.03, whole genome shotgun sequence	136212..136649	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXLN010000002.1	548618..549487	99.655	870	0						
GCA_032759095.1_PDT001941431.1_genomic.fna	Salmonella_enterica	0.521	485.553 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXLO010000001.1 Salmonella enterica strain PNUSAS392156 SAMN37847417-rid19845373.denovo.01, whole genome shotgun sequence	386297..386734	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.61	433/438	ABNXLO010000050.1 Salmonella enterica strain PNUSAS392156 SAMN37847417-rid19845373.guided.28, whole genome shotgun sequence	1..433	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXLO010000003.1	504333..505203	99.196	871	0						
GCA_032759115.1_PDT001941430.1_genomic.fna	Salmonella_enterica	0.5211	682.778 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNXLP010000001.1 Salmonella enterica strain PNUSAS392169 SAMN37847420-rid19845363.denovo.01, whole genome shotgun sequence	596592..597029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNXLP010000024.1 Salmonella enterica strain PNUSAS392169 SAMN37847420-rid19845363.guided.17, whole genome shotgun sequence	14630..15067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXLP010000004.1	544410..545278	99.425	870	0						
GCA_032759135.1_PDT001941428.1_genomic.fna	Salmonella_enterica	0.5222	203.339 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXLR010000002.1 Salmonella enterica strain PNUSAS392165 SAMN37847418-rid19845343.denovo.02, whole genome shotgun sequence	62297..62734	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXLR010000051.1 Salmonella enterica strain PNUSAS392165 SAMN37847418-rid19845343.guided.36, whole genome shotgun sequence	125..562	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032759155.1_PDT001941429.1_genomic.fna	Salmonella_enterica	0.5211	393.477 KB	6	aroC_42,dnaN_11,hemD_48,hisD_149,purE_12,sucA_13,thrA_4	1575	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXLT010000003.1 Salmonella enterica strain PNUSAS392152 SAMN37847416-rid19845353.denovo.03, whole genome shotgun sequence	144458..144895	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXLT010000076.1 Salmonella enterica strain PNUSAS392152 SAMN37847416-rid19845353.guided.43, whole genome shotgun sequence	930..1367	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNXLT010000023.1 Salmonella enterica strain PNUSAS392152 SAMN37847416-rid19845353.denovo.23, whole genome shotgun sequence	11451..12093	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNXLT010000021.1 Salmonella enterica strain PNUSAS392152 SAMN37847416-rid19845353.denovo.21, whole genome shotgun sequence	18873..19455																																																											
GCA_032759175.1_PDT001941426.1_genomic.fna	Salmonella_enterica	0.5219	417.741 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNXLQ010000001.1 Salmonella enterica strain PNUSAS392153 SAMN37847411-rid19845323.denovo.01, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNXLQ010000048.1 Salmonella enterica strain PNUSAS392153 SAMN37847411-rid19845323.guided.30, whole genome shotgun sequence	349..786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXLQ010000012.1	101941..102810	99.655	870	0						
GCA_032759195.1_PDT001941425.1_genomic.fna	Salmonella_enterica	0.5224	335.807 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXLS010000001.1 Salmonella enterica strain PNUSAS392160 SAMN37847409-rid19845313.denovo.01, whole genome shotgun sequence	573960..574397	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXLS010000002.1	149828..150697	99.655	870	0						
GCA_032759215.1_PDT001941424.1_genomic.fna	Salmonella_enterica	0.5212	682.666 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pMET)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNXLU010000001.1 Salmonella enterica strain PNUSAS392148 SAMN37847415-rid19845303.denovo.01, whole genome shotgun sequence	596407..596844	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNXLU010000019.1 Salmonella enterica strain PNUSAS392148 SAMN37847415-rid19845303.guided.17, whole genome shotgun sequence	976..1413	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNXLU010000014.1 Salmonella enterica strain PNUSAS392148 SAMN37847415-rid19845303.denovo.14, whole genome shotgun sequence	18874..19456																																																						avrA	ABNXLU010000004.1	544677..545545	99.425	870	0						
GCA_032759235.1_PDT001941422.1_genomic.fna	Salmonella_enterica	0.5211	238.81 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aadA2,aadA2,aac(6')-Iaa,aadA1,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,floR,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(M),tet(B),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXLZ010000003.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.denovo.03, whole genome shotgun sequence	46029..46466	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNXLZ010000036.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.denovo.36, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNXLZ010000036.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.denovo.36, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNXLZ010000057.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.denovo.65, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXLZ010000057.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.denovo.65, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNXLZ010000077.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.guided.64, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXLZ010000077.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.guided.64, whole genome shotgun sequence	69..872	Streptomycin	AF321551	aadA2	100	792/792	ABNXLZ010000080.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.guided.69, whole genome shotgun sequence	85..876	Spectinomycin, Streptomycin	JQ364967	aadA2	99.87	792/792	ABNXLZ010000081.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.guided.70, whole genome shotgun sequence	85..876	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	100	438/438	ABNXLZ010000082.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.guided.71, whole genome shotgun sequence	358..795	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNXLZ010000083.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.guided.72, whole genome shotgun sequence	176..967	Spectinomycin, Streptomycin	JQ414041	blaTEM-1B	100	861/861	ABNXLZ010000055.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.denovo.61, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNXLZ010000079.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.guided.67, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABNXLZ010000036.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.denovo.36, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNXLZ010000047.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.denovo.48, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABNXLZ010000075.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.guided.58, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNXLZ010000078.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.guided.66, whole genome shotgun sequence	209..1422	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNXLZ010000085.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.guided.76, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNXLZ010000086.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.guided.77, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNXLZ010000087.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.guided.78, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNXLZ010000088.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.guided.79, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNXLZ010000035.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.denovo.35, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNXLZ010000036.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.denovo.36, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABNXLZ010000070.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.guided.45, whole genome shotgun sequence	873..2792	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNXLZ010000076.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.guided.63, whole genome shotgun sequence	666..1871	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABNXLZ010000036.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.denovo.36, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABNXLZ010000084.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.guided.73, whole genome shotgun sequence	336..833	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																															enterobacteriales	Col156	94.81	154 / 154	ABNXLZ010000041.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.denovo.41, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABNXLZ010000050.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.denovo.52, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABNXLZ010000056.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.denovo.62, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNXLZ010000032.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.denovo.32, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNXLZ010000023.1 Salmonella enterica strain PNUSAS392154 SAMN37847413-rid19845283.denovo.23, whole genome shotgun sequence	55745..56241																											avrA	ABNXLZ010000001.1	508765..509634	99.885	870	0						
GCA_032759255.1_PDT001941423.1_genomic.fna	Salmonella_enterica	0.5207	359.669 KB	4	aroC_180,dnaN_161,hemD_132,hisD_21,purE_12,sucA_13,thrA_4	532	16:d:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_180	dnaN	100	100	dnaN_161	hemD	100	100	hemD_132	hisD	100	100	hisD_21	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	16	d	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Barranquilla		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXLV010000001.1 Salmonella enterica strain PNUSAS392158 SAMN37847410-rid19845293.denovo.01, whole genome shotgun sequence	625263..625700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXLV010000039.1 Salmonella enterica strain PNUSAS392158 SAMN37847410-rid19845293.guided.17, whole genome shotgun sequence	15857..16294	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXLV010000002.1	78594..79463	99.54	870	0						
GCA_032759275.1_PDT001941421.1_genomic.fna	Salmonella_enterica	0.5209	301.879 KB	6	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNXLW010000002.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325750 SAMN37847289-rid19844753.denovo.02, whole genome shotgun sequence	456549..456986	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNXLW010000037.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325750 SAMN37847289-rid19844753.guided.28, whole genome shotgun sequence	2454..2891	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI(Gamma)	99.27	137 / 141	ABNXLW010000022.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325750 SAMN37847289-rid19844753.denovo.23, whole genome shotgun sequence	17800..17936																																																						avrA	ABNXLW010000009.1	149704..150573	99.54	870	0						
GCA_032759295.1_PDT001941420.1_genomic.fna	Salmonella_enterica	0.5212	353.996 KB	5	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXLX010000003.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325749 SAMN37847288-rid19844743.denovo.03, whole genome shotgun sequence	252456..252893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXLX010000028.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325749 SAMN37847288-rid19844743.denovo.31, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNXLX010000028.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325749 SAMN37847288-rid19844743.denovo.31, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNXLX010000028.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325749 SAMN37847288-rid19844743.denovo.31, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNXLX010000028.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325749 SAMN37847288-rid19844743.denovo.31, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNXLX010000028.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325749 SAMN37847288-rid19844743.denovo.31, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNXLX010000044.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325749 SAMN37847288-rid19844743.guided.26, whole genome shotgun sequence	9911..10348	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXLX010000046.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325749 SAMN37847288-rid19844743.guided.34, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNXLX010000046.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325749 SAMN37847288-rid19844743.guided.34, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNXLX010000046.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325749 SAMN37847288-rid19844743.guided.34, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNXLX010000046.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325749 SAMN37847288-rid19844743.guided.34, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNXLX010000046.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325749 SAMN37847288-rid19844743.guided.34, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNXLX010000032.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325749 SAMN37847288-rid19844743.denovo.37, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNXLX010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325749 SAMN37847288-rid19844743.guided.35, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.93	374 / 374	ABNXLX010000021.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325749 SAMN37847288-rid19844743.denovo.22, whole genome shotgun sequence	772..1145																																																						avrA	ABNXLX010000008.1	39546..40415	99.655	870	0						
GCA_032759315.1_PDT001941419.1_genomic.fna	Salmonella_enterica	0.5208	295.585 KB	6	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNXLY010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325745 SAMN37847286-rid19845273.denovo.01, whole genome shotgun sequence	462948..463385	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNXLY010000039.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325745 SAMN37847286-rid19845273.guided.20, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXLY010000004.1	149711..150580	99.54	870	0						
GCA_032759335.1_PDT001941418.1_genomic.fna	Salmonella_enterica	0.5178	229.718 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncY	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXMA010000001.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12325746 SAMN37847287-rid19844733.denovo.01, whole genome shotgun sequence	486124..486561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXMA010000059.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12325746 SAMN37847287-rid19844733.guided.36, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNXMA010000003.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12325746 SAMN37847287-rid19844733.denovo.03, whole genome shotgun sequence	388761..389183	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNXMA010000058.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12325746 SAMN37847287-rid19844733.guided.34, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncY	98.69	765 / 765	ABNXMA010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12325746 SAMN37847287-rid19844733.denovo.21, whole genome shotgun sequence	43449..44213																																																						avrA	ABNXMA010000002.1	122302..123171	99.195	870	0						
GCA_032759355.1_PDT001941415.1_genomic.fna	Salmonella_enterica	0.5229	132.341 KB	12	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXMD010000005.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325747 SAMN37847283-rid19844713.denovo.05, whole genome shotgun sequence	168204..168641	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXMD010000082.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325747 SAMN37847283-rid19844713.guided.53, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032759375.1_PDT001941417.1_genomic.fna	Salmonella_enterica	0.5195	222.604 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	1	parC_p.T57S	2	IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXMB010000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325743 SAMN37847284-rid19845263.denovo.08, whole genome shotgun sequence	80623..81060	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXMB010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325743 SAMN37847284-rid19845263.guided.29, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNXMB010000037.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325743 SAMN37847284-rid19845263.denovo.40, whole genome shotgun sequence	9052..10197	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNXMB010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325743 SAMN37847284-rid19845263.guided.44, whole genome shotgun sequence	879..2024	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNXMB010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325743 SAMN37847284-rid19845263.denovo.35, whole genome shotgun sequence	6246..6387	enterobacteriales	IncX1	100	373 / 373	ABNXMB010000040.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325743 SAMN37847284-rid19845263.denovo.43, whole genome shotgun sequence	2153..2525																																																avrA	ABNXMB010000007.1	39484..40353	99.655	870	0						
GCA_032759395.1_PDT001941416.1_genomic.fna	Salmonella_enterica	0.52	301.879 KB	6	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNXMC010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325744 SAMN37847285-rid19844723.denovo.01, whole genome shotgun sequence	730751..731188	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNXMC010000029.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325744 SAMN37847285-rid19844723.guided.26, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXMC010000004.1	149704..150573	99.54	870	0						
GCA_032759415.1_PDT001941414.1_genomic.fna	Salmonella_enterica	0.5223	370.245 KB	5	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(3)-VIa,aadA1,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXMG010000001.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.denovo.01, whole genome shotgun sequence	681256..681693	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNXMG010000024.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.denovo.25, whole genome shotgun sequence	2842..3744	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNXMG010000024.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.denovo.25, whole genome shotgun sequence	1887..2678	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNXMG010000030.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.denovo.35, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNXMG010000030.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.denovo.35, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNXMG010000030.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.denovo.35, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNXMG010000030.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.denovo.35, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNXMG010000030.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.denovo.35, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNXMG010000044.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.guided.27, whole genome shotgun sequence	24619..25056	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXMG010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.guided.34, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNXMG010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.guided.34, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNXMG010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.guided.34, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNXMG010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.guided.34, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNXMG010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.guided.34, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	aac(3)-VIa	100	903/903	ABNXMG010000049.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.guided.39, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNXMG010000050.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.guided.40, whole genome shotgun sequence	1928..2719	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNXMG010000024.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.denovo.25, whole genome shotgun sequence	9744..10583	Sulfamethoxazole	U12338	sul1	100	840/840	ABNXMG010000045.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.guided.28, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNXMG010000029.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.denovo.33, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNXMG010000048.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.guided.36, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNXMG010000024.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.denovo.25, whole genome shotgun sequence	20105..20246	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNXMG010000045.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325748 SAMN37847282-rid19845253.guided.28, whole genome shotgun sequence	10739..10880																																																avrA	ABNXMG010000008.1	39546..40415	99.655	870	0						
GCA_032759435.1_PDT001941413.1_genomic.fna	Salmonella_enterica	0.5214	214.058 KB	7	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXMH010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325741 SAMN37847280-rid19844703.denovo.01, whole genome shotgun sequence	492978..493415	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXMH010000067.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325741 SAMN37847280-rid19844703.guided.36, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABNXMH010000043.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325741 SAMN37847280-rid19844703.denovo.47, whole genome shotgun sequence	2246..2354	enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNXMH010000026.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325741 SAMN37847280-rid19844703.denovo.26, whole genome shotgun sequence	15719..16252		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNXMH010000032.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325741 SAMN37847280-rid19844703.denovo.33, whole genome shotgun sequence	3113..3254																																																				
GCA_032759455.1_PDT001941412.1_genomic.fna	Salmonella_enterica	0.5211	219.729 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXMJ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325742 SAMN37847281-rid19845243.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNXMJ010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325742 SAMN37847281-rid19845243.denovo.36, whole genome shotgun sequence	11952..12743	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNXMJ010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325742 SAMN37847281-rid19845243.denovo.36, whole genome shotgun sequence	11952..12743	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNXMJ010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325742 SAMN37847281-rid19845243.denovo.41, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNXMJ010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325742 SAMN37847281-rid19845243.denovo.41, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNXMJ010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325742 SAMN37847281-rid19845243.guided.27, whole genome shotgun sequence	7570..8007	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNXMJ010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325742 SAMN37847281-rid19845243.guided.39, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNXMJ010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325742 SAMN37847281-rid19845243.guided.39, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNXMJ010000057.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325742 SAMN37847281-rid19845243.guided.48, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNXMJ010000057.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325742 SAMN37847281-rid19845243.guided.48, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNXMJ010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325742 SAMN37847281-rid19845243.denovo.36, whole genome shotgun sequence	10608..11447	Sulfamethoxazole	U12338	sul1	100	840/840	ABNXMJ010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325742 SAMN37847281-rid19845243.guided.39, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNXMJ010000030.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325742 SAMN37847281-rid19845243.denovo.33, whole genome shotgun sequence	1814..3013	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNXMJ010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325742 SAMN37847281-rid19845243.guided.49, whole genome shotgun sequence	184..1383	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNXMJ010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325742 SAMN37847281-rid19845243.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABNXMJ010000002.1	149828..150697	99.655	870	0						
GCA_032759495.1_PDT001941410.1_genomic.fna	Salmonella_enterica	0.5224	236.524 KB	6	aroC_222,dnaN_105,hemD_46,hisD_123,purE_225,sucA_115,thrA_115	1593	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_222	dnaN	100	100	dnaN_105	hemD	100	100	hemD_46	hisD	100	100	hisD_123	purE	100	100	purE_225	sucA	100	100	sucA_115	thrA	100	100	thrA_115	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXMK010000002.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325739 SAMN37847278-rid19844683.denovo.02, whole genome shotgun sequence	378671..379108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXMK010000038.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325739 SAMN37847278-rid19844683.guided.15, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNXMK010000030.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325739 SAMN37847278-rid19844683.denovo.33, whole genome shotgun sequence	2209..2339																																																						avrA	ABNXMK010000006.1	180044..180913	99.425	870	0						
GCA_032759515.1_PDT001941411.1_genomic.fna	Salmonella_enterica	0.5222	251.684 KB	6	aroC_417,dnaN_216,hemD_8,hisD_163,purE_29,sucA_207,thrA_86	1659	30:i:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_417	dnaN	100	100	dnaN_216	hemD	100	100	hemD_8	hisD	100	100	hisD_163	purE	100	100	purE_29	sucA	100	100	sucA_207	thrA	100	100	thrA_86	30	i	l,w	Salmonella enterica subspecies enterica (subspecies I)	Soerenga		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNXMF010000003.1 Salmonella enterica subsp. enterica serovar Soerenga strain FSIS12325740 SAMN37847279-rid19844693.denovo.03, whole genome shotgun sequence	38280..38717	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNXMF010000045.1 Salmonella enterica subsp. enterica serovar Soerenga strain FSIS12325740 SAMN37847279-rid19844693.guided.26, whole genome shotgun sequence	11807..12244	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNXMF010000028.1 Salmonella enterica subsp. enterica serovar Soerenga strain FSIS12325740 SAMN37847279-rid19844693.denovo.31, whole genome shotgun sequence	1125..1255	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNXMF010000031.1 Salmonella enterica subsp. enterica serovar Soerenga strain FSIS12325740 SAMN37847279-rid19844693.denovo.34, whole genome shotgun sequence	666..796																																																avrA	ABNXMF010000001.1	169729..170598	99.655	870	0						
GCA_032760595.1_PDT001941357.1_genomic.fna	Salmonella_enterica	0.521	385.573 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXOJ010000001.1 Salmonella enterica strain PNUSAS391968 SAMN37846943-rid19845053.denovo.01, whole genome shotgun sequence	414575..415012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXOJ010000031.1 Salmonella enterica strain PNUSAS391968 SAMN37846943-rid19845053.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032760635.1_PDT001941353.1_genomic.fna	Salmonella_enterica	0.5223	428.934 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	-:k:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	-	k	-	Salmonella enterica subspecies enterica (subspecies I)	I -:k:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXOO010000001.1 Salmonella enterica strain PNUSAS391980 SAMN37846941-rid19844303.denovo.01, whole genome shotgun sequence	835460..835897	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXOO010000030.1 Salmonella enterica strain PNUSAS391980 SAMN37846941-rid19844303.guided.20, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXOO010000003.1	147893..148762	99.77	870	0						
GCA_032760655.1_PDT001941355.1_genomic.fna	Salmonella_enterica	0.5217	737.677 KB	2	aroC_50,dnaN_10,hemD_25,hisD_72,purE_10,sucA_13,thrA_4	414	9:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Eastbourne		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXOL010000001.1 Salmonella enterica strain PNUSAS391969 SAMN37846944-rid19844323.denovo.01, whole genome shotgun sequence	645692..646129	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXOL010000024.1 Salmonella enterica strain PNUSAS391969 SAMN37846944-rid19844323.guided.14, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXOL010000003.1	152397..153266	99.31	870	0						
GCA_032760675.1_PDT001941356.1_genomic.fna	Salmonella_enterica	0.5212	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXOK010000001.1 Salmonella enterica strain PNUSAS391974 SAMN37846942-rid19844333.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXOK010000027.1 Salmonella enterica strain PNUSAS391974 SAMN37846942-rid19844333.guided.16, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXOK010000017.1 Salmonella enterica strain PNUSAS391974 SAMN37846942-rid19844333.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNXOK010000019.1 Salmonella enterica strain PNUSAS391974 SAMN37846942-rid19844333.denovo.22, whole genome shotgun sequence	3405..3666																																																avrA	ABNXOK010000002.1	553636..554505	99.54	870	0						
GCA_032760735.1_PDT001941349.1_genomic.fna	Salmonella_enterica	0.5206	278.344 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	p0111	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXOQ010000003.1 Salmonella enterica strain PNUSAS391973 SAMN37846945-rid19844273.denovo.03, whole genome shotgun sequence	62186..62623	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXOQ010000033.1 Salmonella enterica strain PNUSAS391973 SAMN37846945-rid19844273.denovo.38, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXOQ010000033.1 Salmonella enterica strain PNUSAS391973 SAMN37846945-rid19844273.denovo.38, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNXOQ010000059.1 Salmonella enterica strain PNUSAS391973 SAMN37846945-rid19844273.guided.27, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXOQ010000063.1 Salmonella enterica strain PNUSAS391973 SAMN37846945-rid19844273.guided.37, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXOQ010000063.1 Salmonella enterica strain PNUSAS391973 SAMN37846945-rid19844273.guided.37, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNXOQ010000040.1 Salmonella enterica strain PNUSAS391973 SAMN37846945-rid19844273.denovo.46, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNXOQ010000064.1 Salmonella enterica strain PNUSAS391973 SAMN37846945-rid19844273.guided.45, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNXOQ010000033.1 Salmonella enterica strain PNUSAS391973 SAMN37846945-rid19844273.denovo.38, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNXOQ010000063.1 Salmonella enterica strain PNUSAS391973 SAMN37846945-rid19844273.guided.37, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNXOQ010000028.1 Salmonella enterica strain PNUSAS391973 SAMN37846945-rid19844273.denovo.31, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNXOQ010000062.1 Salmonella enterica strain PNUSAS391973 SAMN37846945-rid19844273.guided.35, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	p0111	99.55	885 / 885	ABNXOQ010000016.1 Salmonella enterica strain PNUSAS391973 SAMN37846945-rid19844273.denovo.16, whole genome shotgun sequence	72332..73216																																																						avrA	ABNXOQ010000001.1	539636..540505	99.885	870	0						
GCA_032760755.1_PDT001941348.1_genomic.fna	Salmonella_enterica	0.5218	737.677 KB	2	aroC_50,dnaN_10,hemD_25,hisD_72,purE_10,sucA_13,thrA_4	414	9:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Eastbourne		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXOS010000001.1 Salmonella enterica strain PNUSAS391981 SAMN37846939-rid19844263.denovo.01, whole genome shotgun sequence	645692..646129	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXOS010000022.1 Salmonella enterica strain PNUSAS391981 SAMN37846939-rid19844263.guided.11, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXOS010000003.1	152397..153266	99.31	870	0						
GCA_032760775.1_PDT001941347.1_genomic.fna	Salmonella_enterica	0.5212	369.818 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNXOR010000002.1 Salmonella enterica strain PNUSAS391982 SAMN37846940-rid19845033.denovo.02, whole genome shotgun sequence	501493..501930	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNXOR010000055.1 Salmonella enterica strain PNUSAS391982 SAMN37846940-rid19845033.guided.23, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXOR010000009.1	160454..161322	99.425	870	0						
GCA_032760795.1_PDT001941346.1_genomic.fna	Salmonella_enterica	0.5219	737.677 KB	2	aroC_50,dnaN_10,hemD_25,hisD_72,purE_10,sucA_13,thrA_4	414	9:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Eastbourne		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXOT010000001.1 Salmonella enterica strain PNUSAS391977 SAMN37846926-rid19844253.denovo.01, whole genome shotgun sequence	645692..646129	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXOT010000021.1 Salmonella enterica strain PNUSAS391977 SAMN37846926-rid19844253.guided.13, whole genome shotgun sequence	4035..4472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXOT010000003.1	152397..153266	99.31	870	0						
GCA_032760815.1_PDT001941350.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXOP010000001.1 Salmonella enterica strain PNUSAS391971 SAMN37846938-rid19844283.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXOP010000025.1 Salmonella enterica strain PNUSAS391971 SAMN37846938-rid19844283.guided.14, whole genome shotgun sequence	32327..32764	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXOP010000012.1 Salmonella enterica strain PNUSAS391971 SAMN37846938-rid19844283.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNXOP010000017.1 Salmonella enterica strain PNUSAS391971 SAMN37846938-rid19844283.denovo.19, whole genome shotgun sequence	3404..3665																																																avrA	ABNXOP010000002.1	553636..554505	99.54	870	0						
GCA_032760835.1_PDT001941345.1_genomic.fna	Salmonella_enterica	0.5212	489.665 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXOV010000001.1 Salmonella enterica strain PNUSAS391970 SAMN37846928-rid19844243.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXOV010000029.1 Salmonella enterica strain PNUSAS391970 SAMN37846928-rid19844243.guided.15, whole genome shotgun sequence	31737..32174	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXOV010000013.1 Salmonella enterica strain PNUSAS391970 SAMN37846928-rid19844243.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNXOV010000018.1 Salmonella enterica strain PNUSAS391970 SAMN37846928-rid19844243.denovo.20, whole genome shotgun sequence	3403..3664																																																avrA	ABNXOV010000002.1	584148..585017	99.54	870	0						
GCA_032760855.1_PDT001941344.1_genomic.fna	Salmonella_enterica	0.5132	249.859 KB	5	aroC_56,dnaN_143,hemD_28,hisD_263,purE_48,sucA_50,thrA_78	874	53:z4,z23:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_56	dnaN	100	100	dnaN_143	hemD	100	100	hemD_28	hisD	100	100	hisD_263	purE	100	100	purE_48	sucA	100	100	sucA_50	thrA	100	100	thrA_78	53	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 53:z4,z23:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032760875.1_PDT001941343.1_genomic.fna	Salmonella_enterica	0.5214	737.677 KB	2	aroC_50,dnaN_10,hemD_25,hisD_72,purE_10,sucA_13,thrA_4	414	9:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Eastbourne		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXOW010000001.1 Salmonella enterica strain PNUSAS391975 SAMN37846924-rid19844223.denovo.01, whole genome shotgun sequence	645686..646123	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXOW010000018.1 Salmonella enterica strain PNUSAS391975 SAMN37846924-rid19844223.guided.10, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXOW010000003.1	152397..153266	99.31	870	0						
GCA_032760895.1_PDT001941342.1_genomic.fna	Salmonella_enterica	0.521	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXOX010000001.1 Salmonella enterica strain PNUSAS391979 SAMN37846922-rid19845023.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXOX010000029.1 Salmonella enterica strain PNUSAS391979 SAMN37846922-rid19845023.guided.17, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXOX010000017.1 Salmonella enterica strain PNUSAS391979 SAMN37846922-rid19845023.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNXOX010000014.1 Salmonella enterica strain PNUSAS391979 SAMN37846922-rid19845023.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNXOX010000002.1	553636..554505	99.54	870	0						
GCA_032760915.1_PDT001941341.1_genomic.fna	Salmonella_enterica	0.5214	737.677 KB	3	aroC_50,dnaN_10,hemD_25,hisD_72,purE_10,sucA_13,thrA_4	414	9:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Eastbourne		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXPA010000002.1 Salmonella enterica strain PNUSAS391972 SAMN37846925-rid19844213.denovo.02, whole genome shotgun sequence	645692..646129	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXPA010000026.1 Salmonella enterica strain PNUSAS391972 SAMN37846925-rid19844213.guided.12, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXPA010000004.1	152397..153266	99.31	870	0						
GCA_032760935.1_PDT001941339.1_genomic.fna	Salmonella_enterica	0.5211	104.535 KB	13	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXPC010000001.1 Salmonella enterica strain PNUSAS391837 SAMN37846906-rid19844193.denovo.01, whole genome shotgun sequence	192890..193327	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNXPC010000040.1 Salmonella enterica strain PNUSAS391837 SAMN37846906-rid19844193.denovo.40, whole genome shotgun sequence	20643..21473	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABNXPC010000040.1 Salmonella enterica strain PNUSAS391837 SAMN37846906-rid19844193.denovo.40, whole genome shotgun sequence	21479..22282	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNXPC010000082.1 Salmonella enterica strain PNUSAS391837 SAMN37846906-rid19844193.guided.51, whole genome shotgun sequence	20630..21067	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNXPC010000083.1 Salmonella enterica strain PNUSAS391837 SAMN37846906-rid19844193.guided.61, whole genome shotgun sequence	5239..6069	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABNXPC010000083.1 Salmonella enterica strain PNUSAS391837 SAMN37846906-rid19844193.guided.61, whole genome shotgun sequence	4430..5233	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNXPC010000040.1 Salmonella enterica strain PNUSAS391837 SAMN37846906-rid19844193.denovo.40, whole genome shotgun sequence	19062..19922	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNXPC010000085.1 Salmonella enterica strain PNUSAS391837 SAMN37846906-rid19844193.guided.67, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNXPC010000040.1 Salmonella enterica strain PNUSAS391837 SAMN37846906-rid19844193.denovo.40, whole genome shotgun sequence	22343..23158	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNXPC010000083.1 Salmonella enterica strain PNUSAS391837 SAMN37846906-rid19844193.guided.61, whole genome shotgun sequence	3554..4369	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXPC010000053.1 Salmonella enterica strain PNUSAS391837 SAMN37846906-rid19844193.denovo.55, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNXPC010000040.1 Salmonella enterica strain PNUSAS391837 SAMN37846906-rid19844193.denovo.40, whole genome shotgun sequence	3859..4120		enterobacteriales	IncX1	95.76	377 / 377	ABNXPC010000040.1 Salmonella enterica strain PNUSAS391837 SAMN37846906-rid19844193.denovo.40, whole genome shotgun sequence	33447..33823																																									avrA	ABNXPC010000009.1	43555..44424	99.54	870	0						
GCA_032761015.1_PDT001941340.1_genomic.fna	Salmonella_enterica	0.5227	407.153 KB	4	aroC_22,dnaN_104,hemD_25,hisD_113,purE_12,sucA_83,thrA_4	308	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_25	hisD	100	100	hisD_113	purE	100	100	purE_12	sucA	100	100	sucA_83	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNXPB010000001.1 Salmonella enterica strain PNUSAS391976 SAMN37846923-rid19844203.denovo.01, whole genome shotgun sequence	456236..456673	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNXPB010000030.1 Salmonella enterica strain PNUSAS391976 SAMN37846923-rid19844203.guided.20, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXPB010000003.1	94209..95078	99.655	870	0						
GCA_032761175.1_PDT001941315.1_genomic.fna	Salmonella_enterica	0.5201	362.173 KB	5	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNXPL010000001.1 Salmonella enterica strain PNUSAS391911 SAMN37846742-rid19844053.denovo.01, whole genome shotgun sequence	382620..383057	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNXPL010000024.1 Salmonella enterica strain PNUSAS391911 SAMN37846742-rid19844053.guided.14, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABNXPL010000009.1 Salmonella enterica strain PNUSAS391911 SAMN37846742-rid19844053.denovo.09, whole genome shotgun sequence	166829..167251	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNXPL010000026.1 Salmonella enterica strain PNUSAS391911 SAMN37846742-rid19844053.guided.21, whole genome shotgun sequence	36813..37235	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.93	374 / 374	ABNXPL010000019.1 Salmonella enterica strain PNUSAS391911 SAMN37846742-rid19844053.denovo.22, whole genome shotgun sequence	6868..7241																																																						avrA	ABNXPL010000002.1	517785..518654	99.54	870	0						
GCA_032761215.1_PDT001941313.1_genomic.fna	Salmonella_enterica	0.5226	270.099 KB	5	aroC_13,dnaN_11,hemD_25,hisD_197,purE_12,sucA_71,thrA_4	548	21:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_197	purE	100	100	purE_12	sucA	100	100	sucA_71	thrA	100	100	thrA_4	21	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Minnesota		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXPN010000004.1 Salmonella enterica strain PNUSAS391949 SAMN37846739-rid19844033.denovo.04, whole genome shotgun sequence	37890..38327	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXPN010000033.1 Salmonella enterica strain PNUSAS391949 SAMN37846739-rid19844033.guided.26, whole genome shotgun sequence	16428..16865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXPN010000001.1	506923..507792	99.31	870	0						
GCA_032761235.1_PDT001941314.1_genomic.fna	Salmonella_enterica	0.5201	309.948 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXPM010000001.1 Salmonella enterica strain PNUSAS391917 SAMN37846745-rid19844043.denovo.01, whole genome shotgun sequence	727902..728339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXPM010000032.1 Salmonella enterica strain PNUSAS391917 SAMN37846745-rid19844043.guided.20, whole genome shotgun sequence	16444..16881	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXPM010000006.1	39532..40401	99.195	870	0						
GCA_032761255.1_PDT001941310.1_genomic.fna	Salmonella_enterica	0.5197	433.893 KB	5	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXPR010000001.1 Salmonella enterica strain PNUSAS391941 SAMN37846744-rid19844913.denovo.01, whole genome shotgun sequence	693541..693978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNXPR010000076.1 Salmonella enterica strain PNUSAS391941 SAMN37846744-rid19844913.guided.18, whole genome shotgun sequence	22887..23324	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNXPR010000022.1 Salmonella enterica strain PNUSAS391941 SAMN37846744-rid19844913.denovo.24, whole genome shotgun sequence	11438..12080																																																						avrA	ABNXPR010000004.1	150896..151765	99.77	870	0						
GCA_032761275.1_PDT001941312.1_genomic.fna	Salmonella_enterica	0.5213	185.107 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXPP010000002.1 Salmonella enterica strain PNUSAS391927 SAMN37846734-rid19844923.denovo.02, whole genome shotgun sequence	233301..233738	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXPP010000051.1 Salmonella enterica strain PNUSAS391927 SAMN37846734-rid19844923.guided.16, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXPP010000005.1	94139..95007	99.77	870	0						
GCA_032761295.1_PDT001941311.1_genomic.fna	Salmonella_enterica	0.5229	393.771 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXPO010000001.1 Salmonella enterica strain PNUSAS391928 SAMN37846741-rid19844023.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXPO010000034.1 Salmonella enterica strain PNUSAS391928 SAMN37846741-rid19844023.guided.20, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032761315.1_PDT001941309.1_genomic.fna	Salmonella_enterica	0.5208	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXPQ010000001.1 Salmonella enterica strain PNUSAS391939 SAMN37846737-rid19844013.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXPQ010000023.1 Salmonella enterica strain PNUSAS391939 SAMN37846737-rid19844013.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXPQ010000015.1 Salmonella enterica strain PNUSAS391939 SAMN37846737-rid19844013.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNXPQ010000015.1 Salmonella enterica strain PNUSAS391939 SAMN37846737-rid19844013.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNXPQ010000002.1	553636..554505	99.54	870	0						
GCA_032761335.1_PDT001941307.1_genomic.fna	Salmonella_enterica	0.521	372.916 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXPT010000001.1 Salmonella enterica strain PNUSAS391926 SAMN37846738-rid19844893.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXPT010000040.1 Salmonella enterica strain PNUSAS391926 SAMN37846738-rid19844893.guided.13, whole genome shotgun sequence	2107..2544	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXPT010000011.1	95049..95919	99.196	871	0						
GCA_032761355.1_PDT001941308.1_genomic.fna	Salmonella_enterica	0.5219	307.44 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXPS010000001.1 Salmonella enterica strain PNUSAS391929 SAMN37846735-rid19844903.denovo.01, whole genome shotgun sequence	43116..43553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXPS010000030.1 Salmonella enterica strain PNUSAS391929 SAMN37846735-rid19844903.guided.26, whole genome shotgun sequence	13321..13758	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXPS010000005.1	120799..121668	99.31	870	0						
GCA_032761375.1_PDT001941306.1_genomic.fna	Salmonella_enterica	0.5216	376.474 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXPU010000001.1 Salmonella enterica strain PNUSAS391925 SAMN37846740-rid19844003.denovo.01, whole genome shotgun sequence	608202..608639	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXPU010000024.1 Salmonella enterica strain PNUSAS391925 SAMN37846740-rid19844003.guided.17, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXPU010000002.1	563053..563922	99.77	870	0						
GCA_032761395.1_PDT001941304.1_genomic.fna	Salmonella_enterica	0.5229	397.326 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXPW010000001.1 Salmonella enterica strain PNUSAS391910 SAMN37846729-rid19843983.denovo.01, whole genome shotgun sequence	635778..636215	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXPW010000030.1 Salmonella enterica strain PNUSAS391910 SAMN37846729-rid19843983.guided.21, whole genome shotgun sequence	12124..12561	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXPW010000003.1	149739..150608	99.655	870	0						
GCA_032761405.1_PDT001941305.1_genomic.fna	Salmonella_enterica	0.5222	396.741 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXPV010000001.1 Salmonella enterica strain PNUSAS391908 SAMN37846743-rid19843993.denovo.01, whole genome shotgun sequence	635778..636215	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXPV010000030.1 Salmonella enterica strain PNUSAS391908 SAMN37846743-rid19843993.guided.11, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXPV010000003.1	39524..40393	99.655	870	0						
GCA_032761455.1_PDT001941303.1_genomic.fna	Salmonella_enterica	0.5209	202.337 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXPY010000001.1 Salmonella enterica strain PNUSAS391920 SAMN37846733-rid19843973.denovo.01, whole genome shotgun sequence	368605..369042	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXPY010000052.1 Salmonella enterica strain PNUSAS391920 SAMN37846733-rid19843973.guided.35, whole genome shotgun sequence	9390..9827	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032761915.1_PDT001941245.1_genomic.fna	Salmonella_enterica	0.5214	407.819 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXRH010000001.1 Salmonella enterica strain PNUSAS392029 SAMN37846727-rid19843763.denovo.01, whole genome shotgun sequence	481986..482423	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXRH010000025.1 Salmonella enterica strain PNUSAS392029 SAMN37846727-rid19843763.guided.13, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXRH010000002.1	563265..564134	99.77	870	0						
GCA_032762005.1_PDT001941255.1_genomic.fna	Salmonella_enterica	0.5218	162.865 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncB/O/K/Z	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXQY010000001.1 Salmonella enterica strain PNUSAS391909 SAMN37846736-rid19843803.denovo.01, whole genome shotgun sequence	145377..145814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXQY010000046.1 Salmonella enterica strain PNUSAS391909 SAMN37846736-rid19843803.guided.23, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncB/O/K/Z	100	149 / 149	ABNXQY010000022.1 Salmonella enterica strain PNUSAS391909 SAMN37846736-rid19843803.denovo.22, whole genome shotgun sequence	37370..37518																																																						avrA	ABNXQY010000003.1	174641..175509	99.77	870	0						
GCA_032762025.1_PDT001941254.1_genomic.fna	Salmonella_enterica	0.5224	661.033 KB	4	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXQZ010000001.1 Salmonella enterica strain PNUSAS391923 SAMN37846718-rid19843333.denovo.01, whole genome shotgun sequence	431660..432097	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXQZ010000032.1 Salmonella enterica strain PNUSAS391923 SAMN37846718-rid19843333.guided.22, whole genome shotgun sequence	13270..13707	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNXQZ010000026.1 Salmonella enterica strain PNUSAS391923 SAMN37846718-rid19843333.denovo.29, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNXQZ010000034.1 Salmonella enterica strain PNUSAS391923 SAMN37846718-rid19843333.guided.32, whole genome shotgun sequence	606..1250	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNXQZ010000024.1 Salmonella enterica strain PNUSAS391923 SAMN37846718-rid19843333.denovo.27, whole genome shotgun sequence	1251..1381	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNXQZ010000026.1 Salmonella enterica strain PNUSAS391923 SAMN37846718-rid19843333.denovo.29, whole genome shotgun sequence	1150..1280		enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNXQZ010000028.1 Salmonella enterica strain PNUSAS391923 SAMN37846718-rid19843333.denovo.31, whole genome shotgun sequence	1709..1839		enterobacteriales	Col440I	90.2	102 / 114	ABNXQZ010000034.1 Salmonella enterica strain PNUSAS391923 SAMN37846718-rid19843333.guided.32, whole genome shotgun sequence	1..102																																		avrA	ABNXQZ010000002.1	95269..96138	99.425	870	0						
GCA_032762065.1_PDT001941253.1_genomic.fna	Salmonella_enterica	0.5215	256.209 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNXRA010000001.1 Salmonella enterica strain PNUSAS392028 SAMN37846726-rid19843323.denovo.01, whole genome shotgun sequence	477379..477816	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNXRA010000038.1 Salmonella enterica strain PNUSAS392028 SAMN37846726-rid19843323.guided.18, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXRA010000008.1	175895..176763	99.195	870	0						
GCA_032762085.1_PDT001941251.1_genomic.fna	Salmonella_enterica	0.522	271.466 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXRC010000003.1 Salmonella enterica strain PNUSAS391922 SAMN37846719-rid19843793.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXRC010000046.1 Salmonella enterica strain PNUSAS391922 SAMN37846719-rid19843793.guided.22, whole genome shotgun sequence	22318..22755	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNXRC010000015.1 Salmonella enterica strain PNUSAS391922 SAMN37846719-rid19843793.denovo.15, whole genome shotgun sequence	14674..15316	enterobacteriales	IncFII(S)	100	262 / 262	ABNXRC010000015.1 Salmonella enterica strain PNUSAS391922 SAMN37846719-rid19843793.denovo.15, whole genome shotgun sequence	30401..30662																																																avrA	ABNXRC010000001.1	401422..402290	100	869	0						
GCA_032762105.1_PDT001941252.1_genomic.fna	Salmonella_enterica	0.5217	390.774 KB	5	aroC_42,dnaN_169,hemD_48,hisD_149,purE_40,sucA_23,thrA_4	2388	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_169	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_40	sucA	100	100	sucA_23	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXRB010000001.1 Salmonella enterica strain PNUSAS391940 SAMN37846713-rid19843313.denovo.01, whole genome shotgun sequence	151952..152389	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXRB010000037.1 Salmonella enterica strain PNUSAS391940 SAMN37846713-rid19843313.guided.14, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXRB010000002.1	177100..177968	99.31	870	0						
GCA_032762125.1_PDT001941250.1_genomic.fna	Salmonella_enterica	0.5217	341.902 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXRD010000003.1 Salmonella enterica strain PNUSAS391916 SAMN37846720-rid19843303.denovo.03, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXRD010000045.1 Salmonella enterica strain PNUSAS391916 SAMN37846720-rid19843303.guided.20, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNXRD010000016.1 Salmonella enterica strain PNUSAS391916 SAMN37846720-rid19843303.denovo.16, whole genome shotgun sequence	44659..45301	enterobacteriales	IncFII(S)	100	262 / 262	ABNXRD010000016.1 Salmonella enterica strain PNUSAS391916 SAMN37846720-rid19843303.denovo.16, whole genome shotgun sequence	60386..60647																																																avrA	ABNXRD010000001.1	401461..402329	100	869	0						
GCA_032762145.1_PDT001941249.1_genomic.fna	Salmonella_enterica	0.5223	553.455 KB	2	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXRE010000001.1 Salmonella enterica strain PNUSAS391935 SAMN37846716-rid19843783.denovo.01, whole genome shotgun sequence	1370964..1371401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNXRE010000019.1 Salmonella enterica strain PNUSAS391935 SAMN37846716-rid19843783.guided.14, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXRE010000002.1	401431..402300	99.77	870	0						
GCA_032762165.1_PDT001941248.1_genomic.fna	Salmonella_enterica	0.5208	430.002 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXRF010000001.1 Salmonella enterica strain PNUSAS391933 SAMN37846724-rid19843293.denovo.01, whole genome shotgun sequence	477366..477803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXRF010000035.1 Salmonella enterica strain PNUSAS391933 SAMN37846724-rid19843293.guided.18, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXRF010000009.1	140155..141023	99.195	870	0						
GCA_032762185.1_PDT001941244.1_genomic.fna	Salmonella_enterica	0.5214	273.214 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXRI010000002.1 Salmonella enterica strain PNUSAS391913 SAMN37846709-rid19843753.denovo.02, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXRI010000046.1 Salmonella enterica strain PNUSAS391913 SAMN37846709-rid19843753.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNXRI010000016.1 Salmonella enterica strain PNUSAS391913 SAMN37846709-rid19843753.denovo.17, whole genome shotgun sequence	14681..15323	enterobacteriales	IncFII(S)	100	262 / 262	ABNXRI010000016.1 Salmonella enterica strain PNUSAS391913 SAMN37846709-rid19843753.denovo.17, whole genome shotgun sequence	30408..30669																																																avrA	ABNXRI010000003.1	209222..210090	100	869	0						
GCA_032762205.1_PDT001941246.1_genomic.fna	Salmonella_enterica	0.5211	366.725 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXRG010000001.1 Salmonella enterica strain PNUSAS391921 SAMN37846714-rid19843773.denovo.01, whole genome shotgun sequence	558166..558603	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.15	353/438	ABNXRG010000038.1 Salmonella enterica strain PNUSAS391921 SAMN37846714-rid19843773.guided.20, whole genome shotgun sequence	1..353	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXRG010000010.1	154250..155118	99.195	870	0						
GCA_032762225.1_PDT001941243.1_genomic.fna	Salmonella_enterica	0.5205	382.732 KB	5	aroC_13,dnaN_11,hemD_25,hisD_72,purE_10,sucA_23,thrA_23	419	4:a:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	4	a	1,7	Salmonella enterica subspecies enterica (subspecies I)	Arechavaleta		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXRJ010000002.1 Salmonella enterica strain PNUSAS391934 SAMN37846717-rid19843283.denovo.02, whole genome shotgun sequence	152231..152668	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXRJ010000036.1 Salmonella enterica strain PNUSAS391934 SAMN37846717-rid19843283.guided.16, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXRJ010000001.1	167841..168710	99.54	870	0						
GCA_032762245.1_PDT001941242.1_genomic.fna	Salmonella_enterica	0.5203	519.54 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNXRK010000001.1 Salmonella enterica strain PNUSAS391936 SAMN37846725-rid19843273.denovo.01, whole genome shotgun sequence	383390..383827	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNXRK010000026.1 Salmonella enterica strain PNUSAS391936 SAMN37846725-rid19843273.guided.14, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	97.41	193 / 193	ABNXRK010000021.1 Salmonella enterica strain PNUSAS391936 SAMN37846725-rid19843273.denovo.24, whole genome shotgun sequence	278..470																																																						avrA	ABNXRK010000003.1	183910..184779	99.54	870	0						
GCA_032762265.1_PDT001941241.1_genomic.fna	Salmonella_enterica	0.5217	274.501 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXRL010000001.1 Salmonella enterica strain PNUSAS391931 SAMN37846715-rid19843743.denovo.01, whole genome shotgun sequence	558056..558493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXRL010000032.1 Salmonella enterica strain PNUSAS391931 SAMN37846715-rid19843743.guided.23, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXRL010000013.1	95049..95917	99.195	870	0						
GCA_032762285.1_PDT001941240.1_genomic.fna	Salmonella_enterica	0.5218	762.193 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXRM010000001.1 Salmonella enterica strain PNUSAS391918 SAMN37846721-rid19843263.denovo.01, whole genome shotgun sequence	680678..681115	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNXRM010000025.1 Salmonella enterica strain PNUSAS391918 SAMN37846721-rid19843263.guided.18, whole genome shotgun sequence	39976..40413	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXRM010000011.1	39573..40442	99.655	870	0						
GCA_032762305.1_PDT001941239.1_genomic.fna	Salmonella_enterica	0.5207	268.224 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXRN010000003.1 Salmonella enterica strain PNUSAS391948 SAMN37846722-rid19843733.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXRN010000048.1 Salmonella enterica strain PNUSAS391948 SAMN37846722-rid19843733.guided.21, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNXRN010000015.1 Salmonella enterica strain PNUSAS391948 SAMN37846722-rid19843733.denovo.15, whole genome shotgun sequence	83816..84458	enterobacteriales	IncFII(S)	100	262 / 262	ABNXRN010000015.1 Salmonella enterica strain PNUSAS391948 SAMN37846722-rid19843733.denovo.15, whole genome shotgun sequence	5678..5939		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNXRN010000016.1 Salmonella enterica strain PNUSAS391948 SAMN37846722-rid19843733.denovo.16, whole genome shotgun sequence	76545..76686																																									avrA	ABNXRN010000002.1	401413..402281	100	869	0						
GCA_032762325.1_PDT001941238.1_genomic.fna	Salmonella_enterica	0.5216	378.933 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXRO010000001.1 Salmonella enterica strain PNUSAS391930 SAMN37846723-rid19843253.denovo.01, whole genome shotgun sequence	170798..171235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXRO010000028.1 Salmonella enterica strain PNUSAS391930 SAMN37846723-rid19843253.guided.18, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXRO010000002.1	140289..141158	99.31	870	0						
GCA_032762345.1_PDT001941237.1_genomic.fna	Salmonella_enterica	0.521	272.611 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aadA2,aac(3)-IIa,aac(6')-Iaa,aadA2,aph(3')-Ia,aac(3)-IIa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul1,sul1,tet(B),tet(B),dfrA12,dfrA12	0		4	Col(pHAD28),Col(pHAD28),IncFIA,IncFIB(AP001918),IncFII(pCoo)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXRP010000001.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.01, whole genome shotgun sequence	145310..145747	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXRP010000037.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.40, whole genome shotgun sequence	5367..6203	Streptomycin	M28829	aph(3')-Ia	99.88	816/816	ABNXRP010000037.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.40, whole genome shotgun sequence	4216..5031	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin	EF015636	aph(3'')-Ib	100	803/804	ABNXRP010000037.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.40, whole genome shotgun sequence	6203..7005	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNXRP010000037.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.40, whole genome shotgun sequence	6203..7006	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNXRP010000037.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.40, whole genome shotgun sequence	6203..7006	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNXRP010000037.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.40, whole genome shotgun sequence	6203..7006	Streptomycin	AF321550	aadA2	100	792/792	ABNXRP010000046.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.50, whole genome shotgun sequence	1922..2713	Spectinomycin, Streptomycin	JQ364967	aac(3)-IIa	100	861/861	ABNXRP010000056.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.62, whole genome shotgun sequence	742..1602	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin, Gentamicin, Tobramycin	X51534	aac(6')-Iaa	100	438/438	ABNXRP010000074.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.guided.33, whole genome shotgun sequence	10925..11362	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNXRP010000075.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.guided.49, whole genome shotgun sequence	1405..2196	Spectinomycin, Streptomycin	JQ364967	aph(3')-Ia	99.88	816/816	ABNXRP010000077.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.guided.61, whole genome shotgun sequence	334..1149	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin	EF015636	aac(3)-IIa	100	861/861	ABNXRP010000078.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.guided.63, whole genome shotgun sequence	82..942	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin, Gentamicin, Tobramycin	X51534	aph(6)-Id	100	837/837	ABNXRP010000079.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.guided.64, whole genome shotgun sequence	836..1672	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNXRP010000079.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.guided.64, whole genome shotgun sequence	34..836	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNXRP010000079.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.guided.64, whole genome shotgun sequence	33..836	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNXRP010000079.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.guided.64, whole genome shotgun sequence	33..836	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNXRP010000079.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.guided.64, whole genome shotgun sequence	33..836	Streptomycin	AF321550	blaTEM-1B	100	861/861	ABNXRP010000060.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.70, whole genome shotgun sequence	206..1066	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNXRP010000082.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.guided.71, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNXRP010000054.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.59, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNXRP010000076.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.guided.58, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul1	100	840/840	ABNXRP010000046.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.50, whole genome shotgun sequence	578..1417	Sulfamethoxazole	U12338	sul1	100	840/840	ABNXRP010000075.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.guided.49, whole genome shotgun sequence	2701..3540	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABNXRP010000080.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.guided.67, whole genome shotgun sequence	2..1207	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABNXRP010000081.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.guided.68, whole genome shotgun sequence	2..1207	Doxycycline, Tetracycline, Minocycline	AP000342	dfrA12	100	498/498	ABNXRP010000046.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.50, whole genome shotgun sequence	3121..3618	Trimethoprim	AM040708	dfrA12	100	498/498	ABNXRP010000075.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.guided.49, whole genome shotgun sequence	500..997	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	100	131 / 131	ABNXRP010000054.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.59, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNXRP010000076.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.guided.58, whole genome shotgun sequence	2044..2174		enterobacteriales	IncFIA	99.74	388 / 388	ABNXRP010000028.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.29, whole genome shotgun sequence	22084..22470		enterobacteriales	IncFIB(AP001918)	98.09	682 / 682	ABNXRP010000032.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.35, whole genome shotgun sequence	14841..15522		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	ABNXRP010000025.1 Salmonella enterica strain PNUSAS391937 SAMN37846712-rid19843243.denovo.26, whole genome shotgun sequence	126..387																											avrA	ABNXRP010000002.1	434658..435527	99.885	870	0						
GCA_032762365.1_PDT001941232.1_genomic.fna	Salmonella_enterica	0.5202	151.008 KB	9	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_523,thrA_22	2544	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_523	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXRS010000006.1 Salmonella enterica strain PNUSAS392015 SAMN37846672-rid19843223.denovo.06, whole genome shotgun sequence	95821..96258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXRS010000050.1 Salmonella enterica strain PNUSAS392015 SAMN37846672-rid19843223.guided.35, whole genome shotgun sequence	12975..13412	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNXRS010000032.1 Salmonella enterica strain PNUSAS392015 SAMN37846672-rid19843223.denovo.32, whole genome shotgun sequence	6179..6821																																																																	
GCA_032762385.1_PDT001941235.1_genomic.fna	Salmonella_enterica	0.5213	403.728 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXRQ010000001.1 Salmonella enterica strain PNUSAS391947 SAMN37846710-rid19843723.denovo.01, whole genome shotgun sequence	558409..558846	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXRQ010000027.1 Salmonella enterica strain PNUSAS391947 SAMN37846710-rid19843723.guided.16, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXRQ010000007.1	211392..212260	99.195	870	0						
GCA_032762405.1_PDT001941233.1_genomic.fna	Salmonella_enterica	0.5213	282.542 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXRR010000001.1 Salmonella enterica strain PNUSAS391891 SAMN37846690-rid19843233.denovo.01, whole genome shotgun sequence	381670..382107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXRR010000037.1 Salmonella enterica strain PNUSAS391891 SAMN37846690-rid19843233.guided.19, whole genome shotgun sequence	24486..24923	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNXRR010000016.1 Salmonella enterica strain PNUSAS391891 SAMN37846690-rid19843233.denovo.16, whole genome shotgun sequence	72118..72259																																																						avrA	ABNXRR010000003.1	402565..403434	99.885	870	0						
GCA_032762425.1_PDT001941231.1_genomic.fna	Salmonella_enterica	0.5214	487.128 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXRT010000001.1 Salmonella enterica strain PNUSAS391946 SAMN37846668-rid19843713.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXRT010000023.1 Salmonella enterica strain PNUSAS391946 SAMN37846668-rid19843713.guided.16, whole genome shotgun sequence	24489..24926	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXRT010000015.1 Salmonella enterica strain PNUSAS391946 SAMN37846668-rid19843713.denovo.15, whole genome shotgun sequence	48508..49150	enterobacteriales	IncFII(S)	100	262 / 262	ABNXRT010000015.1 Salmonella enterica strain PNUSAS391946 SAMN37846668-rid19843713.denovo.15, whole genome shotgun sequence	4255..4516																																																avrA	ABNXRT010000002.1	553083..553952	99.54	870	0						
GCA_032762445.1_PDT001941230.1_genomic.fna	Salmonella_enterica	0.5214	406.019 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXRU010000001.1 Salmonella enterica strain PNUSAS392011 SAMN37846675-rid19843213.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXRU010000032.1 Salmonella enterica strain PNUSAS392011 SAMN37846675-rid19843213.guided.27, whole genome shotgun sequence	556..993	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXRU010000020.1 Salmonella enterica strain PNUSAS392011 SAMN37846675-rid19843213.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNXRU010000023.1 Salmonella enterica strain PNUSAS392011 SAMN37846675-rid19843213.denovo.25, whole genome shotgun sequence	3213..3474																																																avrA	ABNXRU010000002.1	553077..553946	99.54	870	0						
GCA_032762465.1_PDT001941228.1_genomic.fna	Salmonella_enterica	0.5214	223.105 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXRW010000011.1 Salmonella enterica strain PNUSAS391892 SAMN37846670-rid19843203.denovo.11, whole genome shotgun sequence	68389..68826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXRW010000048.1 Salmonella enterica strain PNUSAS391892 SAMN37846670-rid19843203.guided.17, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNXRW010000018.1 Salmonella enterica strain PNUSAS391892 SAMN37846670-rid19843203.denovo.19, whole genome shotgun sequence	44659..45301	enterobacteriales	IncFII(S)	100	262 / 262	ABNXRW010000018.1 Salmonella enterica strain PNUSAS391892 SAMN37846670-rid19843203.denovo.19, whole genome shotgun sequence	60386..60647																																																avrA	ABNXRW010000001.1	401482..402350	100	869	0						
GCA_032762485.1_PDT001941229.1_genomic.fna	Salmonella_enterica	0.5209	465.91 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXRV010000001.1 Salmonella enterica strain PNUSAS391890 SAMN37846680-rid19843703.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXRV010000038.1 Salmonella enterica strain PNUSAS391890 SAMN37846680-rid19843703.guided.17, whole genome shotgun sequence	2005..2442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXRV010000010.1	95049..95919	99.196	871	0						
GCA_032762505.1_PDT001941227.1_genomic.fna	Salmonella_enterica	0.5215	237.228 KB	7	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXRX010000008.1 Salmonella enterica strain PNUSAS391888 SAMN37846674-rid19843193.denovo.08, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXRX010000050.1 Salmonella enterica strain PNUSAS391888 SAMN37846674-rid19843193.guided.38, whole genome shotgun sequence	6068..6505	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXRX010000001.1	178833..179701	99.31	870	0						
GCA_032762525.1_PDT001941226.1_genomic.fna	Salmonella_enterica	0.5209	770.734 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXRY010000001.1 Salmonella enterica strain PNUSAS391895 SAMN37846678-rid19843693.denovo.01, whole genome shotgun sequence	598863..599300	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXRY010000034.1 Salmonella enterica strain PNUSAS391895 SAMN37846678-rid19843693.guided.11, whole genome shotgun sequence	2537..2974	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNXRY010000021.1 Salmonella enterica strain PNUSAS391895 SAMN37846678-rid19843693.denovo.22, whole genome shotgun sequence	11457..12099																																																						avrA	ABNXRY010000002.1	668846..669715	99.425	870	0						
GCA_032762545.1_PDT001941224.1_genomic.fna	Salmonella_enterica	0.5205	164.843 KB	10	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_150,thrA_22	464	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_150	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXSB010000007.1 Salmonella enterica strain PNUSAS392019 SAMN37846659-rid19843673.denovo.07, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXSB010000066.1 Salmonella enterica strain PNUSAS392019 SAMN37846659-rid19843673.guided.23, whole genome shotgun sequence	32294..32731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNXSB010000024.1 Salmonella enterica strain PNUSAS392019 SAMN37846659-rid19843673.denovo.25, whole genome shotgun sequence	30042..30684																																																																	
GCA_032762565.1_PDT001941225.1_genomic.fna	Salmonella_enterica	0.521	192.188 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXRZ010000006.1 Salmonella enterica strain PNUSAS391889 SAMN37846676-rid19843683.denovo.06, whole genome shotgun sequence	145507..145944	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXRZ010000052.1 Salmonella enterica strain PNUSAS391889 SAMN37846676-rid19843683.guided.17, whole genome shotgun sequence	4176..4613	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABNXRZ010000039.1 Salmonella enterica strain PNUSAS391889 SAMN37846676-rid19843683.denovo.42, whole genome shotgun sequence	483..636																																																						avrA	ABNXRZ010000004.1	184086..184954	99.77	870	0						
GCA_032762585.1_PDT001941223.1_genomic.fna	Salmonella_enterica	0.5202	652.889 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNXSA010000003.1 Salmonella enterica strain PNUSAS392013 SAMN37846677-rid19843183.denovo.03, whole genome shotgun sequence	255063..255500	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNXSA010000029.1 Salmonella enterica strain PNUSAS392013 SAMN37846677-rid19843183.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXSA010000001.1	738094..738962	99.425	870	0						
GCA_032762605.1_PDT001941222.1_genomic.fna	Salmonella_enterica	0.5201	238.811 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		5	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXSD010000001.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.001, whole genome shotgun sequence	581871..582308	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNXSD010000037.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.040, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNXSD010000037.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.040, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNXSD010000048.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.054, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXSD010000048.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.054, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNXSD010000090.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.guided.019, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNXSD010000094.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.guided.045, whole genome shotgun sequence	6042..6833	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNXSD010000095.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.guided.046, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNXSD010000097.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.guided.070, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXSD010000097.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.guided.070, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNXSD010000063.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.072, whole genome shotgun sequence	159..1019	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNXSD010000098.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.guided.071, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABNXSD010000037.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.040, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNXSD010000050.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.056, whole genome shotgun sequence	568..1781	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABNXSD010000094.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.guided.045, whole genome shotgun sequence	7095..8354	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNXSD010000095.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.guided.046, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNXSD010000096.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.guided.066, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNXSD010000048.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.054, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNXSD010000099.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.guided.079, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNXSD010000100.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.guided.080, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNXSD010000101.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.guided.081, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNXSD010000102.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.guided.082, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNXSD010000036.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.039, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.09	1920/1920	ABNXSD010000037.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.040, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNXSD010000093.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.guided.043, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.09	1920/1920	ABNXSD010000095.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.guided.046, whole genome shotgun sequence	4527..6446	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABNXSD010000037.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.040, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABNXSD010000094.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.guided.045, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																								enterobacteriales	Col156	94.81	154 / 154	ABNXSD010000042.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.048, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABNXSD010000055.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.061, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABNXSD010000062.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.069, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNXSD010000035.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.038, whole genome shotgun sequence	2329..3010		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNXSD010000038.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.041, whole genome shotgun sequence	8206..8702		enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	ABNXSD010000030.1 Salmonella enterica strain PNUSAS392009 SAMN37846679-rid19843173.denovo.033, whole genome shotgun sequence	15794..15933																				avrA	ABNXSD010000002.1	402683..403552	99.885	870	0						
GCA_032762625.1_PDT001941221.1_genomic.fna	Salmonella_enterica	0.5212	400.844 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXSC010000001.1 Salmonella enterica strain PNUSAS392014 SAMN37846673-rid19843663.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXSC010000030.1 Salmonella enterica strain PNUSAS392014 SAMN37846673-rid19843663.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXSC010000020.1 Salmonella enterica strain PNUSAS392014 SAMN37846673-rid19843663.denovo.21, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABNXSC010000005.1 Salmonella enterica strain PNUSAS392014 SAMN37846673-rid19843663.denovo.05, whole genome shotgun sequence	3383..3644																																																avrA	ABNXSC010000007.1	174740..175609	99.54	870	0						
GCA_032762645.1_PDT001941220.1_genomic.fna	Salmonella_enterica	0.5208	489.739 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXSE010000001.1 Salmonella enterica strain PNUSAS391897 SAMN37846689-rid19843163.denovo.01, whole genome shotgun sequence	281996..282433	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXSE010000025.1 Salmonella enterica strain PNUSAS391897 SAMN37846689-rid19843163.guided.14, whole genome shotgun sequence	42862..43299	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXSE010000014.1 Salmonella enterica strain PNUSAS391897 SAMN37846689-rid19843163.denovo.15, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABNXSE010000014.1 Salmonella enterica strain PNUSAS391897 SAMN37846689-rid19843163.denovo.15, whole genome shotgun sequence	4078..4339																																																avrA	ABNXSE010000002.1	506145..507014	99.54	870	0						
GCA_032762685.1_PDT001941211.1_genomic.fna	Salmonella_enterica	0.5202	311.531 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXSK010000001.1 Salmonella enterica strain PNUSAS391942 SAMN37846664-rid19843113.denovo.01, whole genome shotgun sequence	477346..477783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXSK010000032.1 Salmonella enterica strain PNUSAS391942 SAMN37846664-rid19843113.guided.12, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXSK010000009.1	140203..141071	99.195	870	0						
GCA_032762705.1_PDT001941219.1_genomic.fna	Salmonella_enterica	0.5207	238.636 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA1,aadA8b,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,floR,sul2,sul2,sul2,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(M),tet(M),tet(B),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXSF010000001.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.01, whole genome shotgun sequence	494062..494499	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNXSF010000041.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.45, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNXSF010000065.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.73, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXSF010000065.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.73, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNXSF010000079.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.guided.34, whole genome shotgun sequence	20997..21434	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNXSF010000080.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.guided.43, whole genome shotgun sequence	1778..2569	Spectinomycin, Streptomycin	JQ414041	aadA8b	99.75	792/792	ABNXSF010000081.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.guided.48, whole genome shotgun sequence	1082..1873	Spectinomycin, Streptomycin	AM040708	aph(6)-Id	100	837/837	ABNXSF010000084.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.guided.72, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXSF010000084.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.guided.72, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNXSF010000063.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.70, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNXSF010000085.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.guided.76, whole genome shotgun sequence	226..1086	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABNXSF010000041.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.45, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNXSF010000059.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.65, whole genome shotgun sequence	882..2095	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABNXSF010000080.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.guided.43, whole genome shotgun sequence	426..1685	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNXSF010000083.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.guided.68, whole genome shotgun sequence	874..2087	Chloramphenicol, Florfenicol	AF118107	sul2	100	770/816	ABNXSF010000061.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.67, whole genome shotgun sequence	1..770	Sulfamethoxazole	AB366440	sul2	100	770/816	ABNXSF010000061.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.67, whole genome shotgun sequence	1..770	Sulfamethoxazole	FN995456	sul2	100	770/816	ABNXSF010000061.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.67, whole genome shotgun sequence	1..770	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNXSF010000086.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.guided.80, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNXSF010000087.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.guided.81, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNXSF010000088.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.guided.82, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNXSF010000089.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.guided.83, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNXSF010000040.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.44, whole genome shotgun sequence	672..1877	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNXSF010000041.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.45, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABNXSF010000080.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.guided.43, whole genome shotgun sequence	4497..6416	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABNXSF010000081.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.guided.48, whole genome shotgun sequence	3801..5720	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNXSF010000082.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.guided.52, whole genome shotgun sequence	4117..5322	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABNXSF010000037.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.40, whole genome shotgun sequence	1011..1508	Trimethoprim	AM040708	dfrA12	100	498/498	ABNXSF010000081.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.guided.48, whole genome shotgun sequence	177..674	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																	enterobacteriales	Col156	94.81	154 / 154	ABNXSF010000044.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.49, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABNXSF010000058.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.64, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABNXSF010000064.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.71, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNXSF010000048.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.54, whole genome shotgun sequence	2185..2866		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNXSF010000029.1 Salmonella enterica strain PNUSAS392017 SAMN37846669-rid19843653.denovo.30, whole genome shotgun sequence	28291..28787																											avrA	ABNXSF010000002.1	402695..403564	99.885	870	0						
GCA_032762715.1_PDT001941216.1_genomic.fna	Salmonella_enterica	0.5209	406.084 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXSH010000001.1 Salmonella enterica strain PNUSAS391896 SAMN37846688-rid19843133.denovo.01, whole genome shotgun sequence	276185..276622	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXSH010000028.1 Salmonella enterica strain PNUSAS391896 SAMN37846688-rid19843133.guided.15, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXSH010000016.1 Salmonella enterica strain PNUSAS391896 SAMN37846688-rid19843133.denovo.17, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABNXSH010000016.1 Salmonella enterica strain PNUSAS391896 SAMN37846688-rid19843133.denovo.17, whole genome shotgun sequence	4078..4339																																																avrA	ABNXSH010000002.1	552599..553468	99.54	870	0						
GCA_032762745.1_PDT001941218.1_genomic.fna	Salmonella_enterica	0.5216	251.541 KB	5	aroC_559,dnaN_64,hemD_40,hisD_96,purE_448,sucA_186,thrA_553	2794	7:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_559	dnaN	100	100	dnaN_64	hemD	100	100	hemD_40	hisD	100	100	hisD_96	purE	100	100	purE_448	sucA	100	100	sucA_186	thrA	100	100	thrA_553	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXSG010000001.1 Salmonella enterica strain PNUSAS391932 SAMN37846665-rid19843153.denovo.01, whole genome shotgun sequence	154426..154863	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXSG010000030.1 Salmonella enterica strain PNUSAS391932 SAMN37846665-rid19843153.guided.21, whole genome shotgun sequence	1832..2269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032762765.1_PDT001941215.1_genomic.fna	Salmonella_enterica	0.521	341.383 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXSI010000004.1 Salmonella enterica strain PNUSAS391943 SAMN37846667-rid19843643.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXSI010000047.1 Salmonella enterica strain PNUSAS391943 SAMN37846667-rid19843643.guided.19, whole genome shotgun sequence	39..476	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNXSI010000014.1 Salmonella enterica strain PNUSAS391943 SAMN37846667-rid19843643.denovo.14, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNXSI010000014.1 Salmonella enterica strain PNUSAS391943 SAMN37846667-rid19843643.denovo.14, whole genome shotgun sequence	30407..30668																																																avrA	ABNXSI010000001.1	401221..402089	100	869	0						
GCA_032762785.1_PDT001941210.1_genomic.fna	Salmonella_enterica	0.5203	738.455 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXSL010000001.1 Salmonella enterica strain PNUSAS391944 SAMN37846663-rid19843633.denovo.01, whole genome shotgun sequence	685696..686133	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNXSL010000018.1 Salmonella enterica strain PNUSAS391944 SAMN37846663-rid19843633.guided.10, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNXSL010000010.1 Salmonella enterica strain PNUSAS391944 SAMN37846663-rid19843633.denovo.11, whole genome shotgun sequence	3184..3717																																																						avrA	ABNXSL010000002.1	562814..563684	99.656	871	0						
GCA_032762805.1_PDT001941209.1_genomic.fna	Salmonella_enterica	0.5208	412.879 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXSM010000001.1 Salmonella enterica strain PNUSAS391912 SAMN37846661-rid19843623.denovo.01, whole genome shotgun sequence	498116..498553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXSM010000031.1 Salmonella enterica strain PNUSAS391912 SAMN37846661-rid19843623.guided.21, whole genome shotgun sequence	13566..14003	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXSM010000008.1	140303..141172	99.425	870	0						
GCA_032762825.1_PDT001941213.1_genomic.fna	Salmonella_enterica	0.5211	339.257 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXSJ010000004.1 Salmonella enterica strain PNUSAS391915 SAMN37846662-rid19843123.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXSJ010000048.1 Salmonella enterica strain PNUSAS391915 SAMN37846662-rid19843123.guided.12, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNXSJ010000013.1 Salmonella enterica strain PNUSAS391915 SAMN37846662-rid19843123.denovo.14, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNXSJ010000013.1 Salmonella enterica strain PNUSAS391915 SAMN37846662-rid19843123.denovo.14, whole genome shotgun sequence	30407..30668																																																avrA	ABNXSJ010000003.1	401484..402352	100	869	0						
GCA_032762845.1_PDT001941205.1_genomic.fna	Salmonella_enterica	0.5151	301.081 KB	5	aroC_88,dnaN_26,hemD_30,hisD_87,purE_21,sucA_87,thrA_80	243	61:l,v:1,5,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_87	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_80	61	l,v	1,5,7	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:l,v:1,5,7		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXSQ010000003.1 Salmonella enterica strain PNUSAS391898 SAMN37846653-rid19843613.denovo.03, whole genome shotgun sequence	127423..127860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXSQ010000038.1 Salmonella enterica strain PNUSAS391898 SAMN37846653-rid19843613.guided.18, whole genome shotgun sequence	53673..54110	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXSQ010000001.1	144600..145469	96.437	870	0						
GCA_032762865.1_PDT001941208.1_genomic.fna	Salmonella_enterica	0.5203	466.694 KB	5	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNXSN010000001.1 Salmonella enterica strain PNUSAS391914 SAMN37846660-rid19843103.denovo.01, whole genome shotgun sequence	223451..223888	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNXSN010000023.1 Salmonella enterica strain PNUSAS391914 SAMN37846660-rid19843103.guided.16, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNXSN010000015.1 Salmonella enterica strain PNUSAS391914 SAMN37846660-rid19843103.denovo.15, whole genome shotgun sequence	11256..11789																																																						avrA	ABNXSN010000002.1	149936..150805	99.425	870	0						
GCA_032762885.1_PDT001941207.1_genomic.fna	Salmonella_enterica	0.5199	480.593 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNXSO010000001.1 Salmonella enterica strain PNUSAS391904 SAMN37846644-rid19843093.denovo.01, whole genome shotgun sequence	625114..625551	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNXSO010000022.1 Salmonella enterica strain PNUSAS391904 SAMN37846644-rid19843093.guided.13, whole genome shotgun sequence	19101..19538	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXSO010000002.1	509968..510836	99.425	870	0						
GCA_032762905.1_PDT001941206.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXSP010000001.1 Salmonella enterica strain PNUSAS391903 SAMN37846646-rid19843083.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXSP010000030.1 Salmonella enterica strain PNUSAS391903 SAMN37846646-rid19843083.guided.22, whole genome shotgun sequence	5660..6097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXSP010000016.1 Salmonella enterica strain PNUSAS391903 SAMN37846646-rid19843083.denovo.17, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNXSP010000016.1 Salmonella enterica strain PNUSAS391903 SAMN37846646-rid19843083.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABNXSP010000002.1	553636..554505	99.54	870	0						
GCA_032762925.1_PDT001941204.1_genomic.fna	Salmonella_enterica	0.5222	523.287 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	10	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrB19,qnrA1,qnrB19,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col440I,IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXSR010000001.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.denovo.01, whole genome shotgun sequence	172199..172636	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNXSR010000024.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.denovo.29, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNXSR010000032.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.guided.14, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNXSR010000036.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.guided.28, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNXSR010000024.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.denovo.29, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNXSR010000036.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.guided.28, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNXSR010000021.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.denovo.25, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNXSR010000035.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.guided.24, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNXSR010000019.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.denovo.22, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNXSR010000037.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNXSR010000024.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.denovo.29, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrB19	100	645/645	ABNXSR010000026.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.denovo.33, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrA1	100	657/657	ABNXSR010000036.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.guided.28, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	qnrB19	100	645/645	ABNXSR010000039.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.guided.34, whole genome shotgun sequence	606..1250	Ciprofloxacin	EU432277	sul1	100	840/840	ABNXSR010000027.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.denovo.36, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNXSR010000040.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.guided.35, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNXSR010000019.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.denovo.22, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNXSR010000038.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.guided.32, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNXSR010000019.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.denovo.22, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNXSR010000038.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.guided.32, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNXSR010000023.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.denovo.27, whole genome shotgun sequence	1164..1294	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNXSR010000026.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.denovo.33, whole genome shotgun sequence	1150..1280		enterobacteriales	Col440I	90.2	102 / 114	ABNXSR010000039.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.guided.34, whole genome shotgun sequence	1..102		enterobacteriales	IncR	100	251 / 251	ABNXSR010000017.1 Salmonella enterica strain PNUSAS391901 SAMN37846657-rid19843603.denovo.19, whole genome shotgun sequence	4434..4684																																		avrA	ABNXSR010000002.1	553345..554214	99.77	870	0						
GCA_032762945.1_PDT001941202.1_genomic.fna	Salmonella_enterica	0.5209	362.126 KB	5	aroC_18,dnaN_14,hemD_12,hisD_9,purE_5,sucA_18,thrA_21	36	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_14	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_18	thrA	100	100	thrA_21	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXST010000001.1 Salmonella enterica strain PNUSAS392016 SAMN37846654-rid19843063.denovo.01, whole genome shotgun sequence	287867..288304	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXST010000055.1 Salmonella enterica strain PNUSAS392016 SAMN37846654-rid19843063.guided.30, whole genome shotgun sequence	6264..6701	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXST010000002.1	174490..175359	99.885	870	0						
GCA_032762965.1_PDT001941203.1_genomic.fna	Salmonella_enterica	0.5213	204.859 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXSS010000002.1 Salmonella enterica strain PNUSAS392020 SAMN37846656-rid19843073.denovo.02, whole genome shotgun sequence	162383..162820	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNXSS010000054.1 Salmonella enterica strain PNUSAS392020 SAMN37846656-rid19843073.denovo.61, whole genome shotgun sequence	17..796	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNXSS010000062.1 Salmonella enterica strain PNUSAS392020 SAMN37846656-rid19843073.guided.26, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNXSS010000068.1 Salmonella enterica strain PNUSAS392020 SAMN37846656-rid19843073.guided.59, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNXSS010000051.1 Salmonella enterica strain PNUSAS392020 SAMN37846656-rid19843073.denovo.57, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNXSS010000067.1 Salmonella enterica strain PNUSAS392020 SAMN37846656-rid19843073.guided.55, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	99.92	1215/1215	ABNXSS010000040.1 Salmonella enterica strain PNUSAS392020 SAMN37846656-rid19843073.denovo.44, whole genome shotgun sequence	5127..6341	Chloramphenicol, Florfenicol	AF118107	floR	99.92	1215/1215	ABNXSS010000065.1 Salmonella enterica strain PNUSAS392020 SAMN37846656-rid19843073.guided.43, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNXSS010000066.1 Salmonella enterica strain PNUSAS392020 SAMN37846656-rid19843073.guided.50, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNXSS010000040.1 Salmonella enterica strain PNUSAS392020 SAMN37846656-rid19843073.denovo.44, whole genome shotgun sequence	3015..4190	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNXSS010000065.1 Salmonella enterica strain PNUSAS392020 SAMN37846656-rid19843073.guided.43, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	IncFIB(S)	100	643 / 643	ABNXSS010000030.1 Salmonella enterica strain PNUSAS392020 SAMN37846656-rid19843073.denovo.31, whole genome shotgun sequence	24677..25319	enterobacteriales	IncFII(S)	100	262 / 262	ABNXSS010000030.1 Salmonella enterica strain PNUSAS392020 SAMN37846656-rid19843073.denovo.31, whole genome shotgun sequence	9331..9592																																																avrA	ABNXSS010000001.1	506641..507510	99.885	870	0						
GCA_032762985.1_PDT001941201.1_genomic.fna	Salmonella_enterica	0.5206	478.925 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXSU010000001.1 Salmonella enterica strain PNUSAS391894 SAMN37846649-rid19843053.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXSU010000027.1 Salmonella enterica strain PNUSAS391894 SAMN37846649-rid19843053.guided.16, whole genome shotgun sequence	31506..31943	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXSU010000015.1 Salmonella enterica strain PNUSAS391894 SAMN37846649-rid19843053.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNXSU010000015.1 Salmonella enterica strain PNUSAS391894 SAMN37846649-rid19843053.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNXSU010000002.1	553077..553946	99.54	870	0						
GCA_032763025.1_PDT001941199.1_genomic.fna	Salmonella_enterica	0.5204	470.31 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXSW010000001.1 Salmonella enterica strain PNUSAS391900 SAMN37846648-rid19843583.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXSW010000028.1 Salmonella enterica strain PNUSAS391900 SAMN37846648-rid19843583.guided.15, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXSW010000016.1 Salmonella enterica strain PNUSAS391900 SAMN37846648-rid19843583.denovo.17, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNXSW010000016.1 Salmonella enterica strain PNUSAS391900 SAMN37846648-rid19843583.denovo.17, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNXSW010000017.1 Salmonella enterica strain PNUSAS391900 SAMN37846648-rid19843583.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABNXSW010000007.1	175109..175978	99.54	870	0						
GCA_032763105.1_PDT001941192.1_genomic.fna	Salmonella_enterica	0.5209	450.057 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	-:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	-	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:m,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXTA010000001.1 Salmonella enterica strain PNUSAS391899 SAMN37846647-rid19843013.denovo.01, whole genome shotgun sequence	414601..415038	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXTA010000018.1 Salmonella enterica strain PNUSAS391899 SAMN37846647-rid19843013.guided.14, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032763175.1_PDT001941187.1_genomic.fna	Salmonella_enterica	0.5206	296.692 KB	6	aroC_75,dnaN_67,hemD_10,hisD_17,purE_15,sucA_9,thrA_66	197	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_75	dnaN	100	100	dnaN_67	hemD	100	100	hemD_10	hisD	100	100	hisD_17	purE	100	100	purE_15	sucA	100	100	sucA_9	thrA	100	100	thrA_66	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNXTD010000004.1 Salmonella enterica strain PNUSAS391893 SAMN37846645-rid19842993.denovo.04, whole genome shotgun sequence	322078..322515	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNXTD010000042.1 Salmonella enterica strain PNUSAS391893 SAMN37846645-rid19842993.guided.19, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXTD010000001.1	527272..528141	99.77	870	0						
GCA_032763285.1_PDT001941177.1_genomic.fna	Salmonella_enterica	0.5217	113.333 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aph(6)-Id,aac(6')-Iaa,aph(6)-Id	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXTI010000001.1 Salmonella enterica strain PNUSAS391838 SAMN37846578-rid19842943.denovo.01, whole genome shotgun sequence	175596..176033	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	789/837	ABNXTI010000081.1 Salmonella enterica strain PNUSAS391838 SAMN37846578-rid19842943.denovo.85, whole genome shotgun sequence	1..789	Streptomycin	M28829	aac(6')-Iaa	100	438/438	ABNXTI010000097.1 Salmonella enterica strain PNUSAS391838 SAMN37846578-rid19842943.guided.75, whole genome shotgun sequence	3665..4102	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	820/837	ABNXTI010000098.1 Salmonella enterica strain PNUSAS391838 SAMN37846578-rid19842943.guided.84, whole genome shotgun sequence	1..820	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col156	96.1	154 / 154	ABNXTI010000075.1 Salmonella enterica strain PNUSAS391838 SAMN37846578-rid19842943.denovo.78, whole genome shotgun sequence	483..636																																																						avrA	ABNXTI010000016.1	100935..101803	99.77	870	0						
GCA_032763305.1_PDT001941176.1_genomic.fna	Salmonella_enterica	0.5216	149.459 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXTJ010000001.1 Salmonella enterica strain PNUSAS391835 SAMN37846579-rid19842933.denovo.01, whole genome shotgun sequence	115023..115460	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXTJ010000084.1 Salmonella enterica strain PNUSAS391835 SAMN37846579-rid19842933.guided.52, whole genome shotgun sequence	10480..10917	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABNXTJ010000063.1 Salmonella enterica strain PNUSAS391835 SAMN37846579-rid19842933.denovo.66, whole genome shotgun sequence	483..636																																																						avrA	ABNXTJ010000003.1	184086..184954	99.77	870	0						
GCA_032763325.1_PDT001941175.1_genomic.fna	Salmonella_enterica	0.5217	177.029 KB	7	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNXTK010000001.1 Salmonella enterica strain PNUSAS391836 SAMN37846576-rid19842923.denovo.01, whole genome shotgun sequence	456552..456989	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNXTK010000050.1 Salmonella enterica strain PNUSAS391836 SAMN37846576-rid19842923.guided.40, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXTK010000002.1	149710..150579	99.425	870	0						
GCA_032763345.1_PDT001941174.1_genomic.fna	Salmonella_enterica	0.5214	153.102 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXTL010000009.1 Salmonella enterica strain PNUSAS391840 SAMN37846575-rid19843523.denovo.09, whole genome shotgun sequence	20249..20686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXTL010000063.1 Salmonella enterica strain PNUSAS391840 SAMN37846575-rid19843523.guided.34, whole genome shotgun sequence	30828..31265	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXTL010000047.1 Salmonella enterica strain PNUSAS391840 SAMN37846575-rid19843523.denovo.50, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABNXTL010000034.1 Salmonella enterica strain PNUSAS391840 SAMN37846575-rid19843523.denovo.35, whole genome shotgun sequence	4234..4495																																																avrA	ABNXTL010000021.1	43557..44426	99.54	870	0						
GCA_032763385.1_PDT001941171.1_genomic.fna	Salmonella_enterica	0.5207	366.723 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXTN010000001.1 Salmonella enterica strain PNUSAS391848 SAMN37846568-rid19842893.denovo.01, whole genome shotgun sequence	477354..477791	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXTN010000043.1 Salmonella enterica strain PNUSAS391848 SAMN37846568-rid19842893.guided.21, whole genome shotgun sequence	18115..18552	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABNXTN010000023.1 Salmonella enterica strain PNUSAS391848 SAMN37846568-rid19842893.denovo.25, whole genome shotgun sequence	15864..16125																																																						avrA	ABNXTN010000008.1	200154..201022	99.195	870	0						
GCA_032763405.1_PDT001941173.1_genomic.fna	Salmonella_enterica	0.5153	89.361 KB	15	aroC_235,dnaN_25,hemD_28,hisD_24,purE_237,sucA_26,thrA_78	869	18:z4,z23:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_235	dnaN	100	100	dnaN_25	hemD	100	100	hemD_28	hisD	100	100	hisD_24	purE	100	100	purE_237	sucA	100	100	sucA_26	thrA	100	100	thrA_78	18	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 18:z4,z23:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032763425.1_PDT001941170.1_genomic.fna	Salmonella_enterica	0.5214	400.829 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXTO010000001.1 Salmonella enterica strain PNUSAS391834 SAMN37846569-rid19843513.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXTO010000032.1 Salmonella enterica strain PNUSAS391834 SAMN37846569-rid19843513.guided.19, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXTO010000019.1 Salmonella enterica strain PNUSAS391834 SAMN37846569-rid19843513.denovo.20, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNXTO010000021.1 Salmonella enterica strain PNUSAS391834 SAMN37846569-rid19843513.denovo.24, whole genome shotgun sequence	3409..3670																																																avrA	ABNXTO010000002.1	553636..554505	99.54	870	0						
GCA_032763485.1_PDT001941157.1_genomic.fna	Salmonella_enterica	0.5228	268.897 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXTS010000001.1 Salmonella enterica strain PNUSAS391833 SAMN37846552-rid19842813.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXTS010000033.1 Salmonella enterica strain PNUSAS391833 SAMN37846552-rid19842813.guided.26, whole genome shotgun sequence	20589..21026	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXTS010000005.1	94091..94960	99.655	870	0						
GCA_032763505.1_PDT001941156.1_genomic.fna	Salmonella_enterica	0.5214	682.778 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNXTT010000001.1 Salmonella enterica strain PNUSAS391532 SAMN37846548-rid19842803.denovo.01, whole genome shotgun sequence	486959..487396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNXTT010000021.1 Salmonella enterica strain PNUSAS391532 SAMN37846548-rid19842803.guided.12, whole genome shotgun sequence	30285..30722	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXTT010000004.1	556047..556915	99.425	870	0						
GCA_032763545.1_PDT001941155.1_genomic.fna	Salmonella_enterica	0.521	430.367 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXTU010000001.1 Salmonella enterica strain PNUSAS391533 SAMN37846550-rid19842793.denovo.01, whole genome shotgun sequence	455719..456156	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXTU010000042.1 Salmonella enterica strain PNUSAS391533 SAMN37846550-rid19842793.guided.18, whole genome shotgun sequence	40128..40565	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXTU010000002.1	516990..517858	99.195	870	0						
GCA_032763565.1_PDT001941153.1_genomic.fna	Salmonella_enterica	0.5211	260.007 KB	6	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXTW010000001.1 Salmonella enterica strain PNUSAS391828 SAMN37846556-rid19843443.denovo.01, whole genome shotgun sequence	389473..389910	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXTW010000042.1 Salmonella enterica strain PNUSAS391828 SAMN37846556-rid19843443.guided.35, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNXTW010000032.1 Salmonella enterica strain PNUSAS391828 SAMN37846556-rid19843443.denovo.34, whole genome shotgun sequence	2597..2727																																																						avrA	ABNXTW010000009.1	93871..94740	99.425	870	0						
GCA_032763585.1_PDT001941154.1_genomic.fna	Salmonella_enterica	0.5216	682.666 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNXTV010000001.1 Salmonella enterica strain PNUSAS391538 SAMN37846549-rid19843453.denovo.01, whole genome shotgun sequence	596408..596845	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNXTV010000020.1 Salmonella enterica strain PNUSAS391538 SAMN37846549-rid19843453.guided.16, whole genome shotgun sequence	12387..12824	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXTV010000002.1	556041..556909	99.425	870	0						
GCA_032763605.1_PDT001941152.1_genomic.fna	Salmonella_enterica	0.5216	255.255 KB	7	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXTX010000001.1 Salmonella enterica strain PNUSAS391832 SAMN37846555-rid19842783.denovo.01, whole genome shotgun sequence	417155..417592	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXTX010000042.1 Salmonella enterica strain PNUSAS391832 SAMN37846555-rid19842783.guided.33, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNXTX010000032.1 Salmonella enterica strain PNUSAS391832 SAMN37846555-rid19842783.denovo.35, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNXTX010000043.1 Salmonella enterica strain PNUSAS391832 SAMN37846555-rid19842783.guided.36, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNXTX010000032.1 Salmonella enterica strain PNUSAS391832 SAMN37846555-rid19842783.denovo.35, whole genome shotgun sequence	1150..1280																																																						avrA	ABNXTX010000009.1	150591..151459	99.195	870	0						
GCA_032763625.1_PDT001941151.1_genomic.fna	Salmonella_enterica	0.5223	353.902 KB	5	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_19,thrA_12	582	8:z4,z23:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	z4,z23	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Chailey		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXTY010000002.1 Salmonella enterica strain PNUSAS391830 SAMN37846553-rid19842773.denovo.02, whole genome shotgun sequence	464281..464718	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXTY010000032.1 Salmonella enterica strain PNUSAS391830 SAMN37846553-rid19842773.guided.20, whole genome shotgun sequence	24917..25354	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXTY010000008.1	140165..141033	99.425	870	0						
GCA_032763645.1_PDT001941150.1_genomic.fna	Salmonella_enterica	0.5219	307.03 KB	6	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXTZ010000001.1 Salmonella enterica strain PNUSAS391829 SAMN37846554-rid19842763.denovo.01, whole genome shotgun sequence	177250..177687	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXTZ010000037.1 Salmonella enterica strain PNUSAS391829 SAMN37846554-rid19842763.guided.29, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNXTZ010000030.1 Salmonella enterica strain PNUSAS391829 SAMN37846554-rid19842763.denovo.33, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNXTZ010000038.1 Salmonella enterica strain PNUSAS391829 SAMN37846554-rid19842763.guided.34, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNXTZ010000030.1 Salmonella enterica strain PNUSAS391829 SAMN37846554-rid19842763.denovo.33, whole genome shotgun sequence	1150..1280																																																						avrA	ABNXTZ010000005.1	182896..183765	99.77	870	0						
GCA_032763665.1_PDT001941149.1_genomic.fna	Salmonella_enterica	0.5203	363.782 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXUA010000001.1 Salmonella enterica strain PNUSAS391831 SAMN37846551-rid19843433.denovo.01, whole genome shotgun sequence	563827..564264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXUA010000035.1 Salmonella enterica strain PNUSAS391831 SAMN37846551-rid19843433.guided.20, whole genome shotgun sequence	32265..32702	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXUA010000011.1	140075..140943	99.195	870	0						
GCA_032763705.1_PDT001941147.1_genomic.fna	Salmonella_enterica	0.5209	384.006 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXUC010000001.1 Salmonella enterica strain PNUSAS391530 SAMN37846528-rid19842753.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXUC010000054.1 Salmonella enterica strain PNUSAS391530 SAMN37846528-rid19842753.guided.27, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXUC010000011.1	93870..94740	99.196	871	0						
GCA_032763725.1_PDT001941145.1_genomic.fna	Salmonella_enterica	0.5207	670.508 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXUE010000001.1 Salmonella enterica strain PNUSAS391535 SAMN37846523-rid19842733.denovo.01, whole genome shotgun sequence	671824..672261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXUE010000041.1 Salmonella enterica strain PNUSAS391535 SAMN37846523-rid19842733.guided.18, whole genome shotgun sequence	20611..21048	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNXUE010000018.1 Salmonella enterica strain PNUSAS391535 SAMN37846523-rid19842733.denovo.20, whole genome shotgun sequence	5946..6588																																																						avrA	ABNXUE010000005.1	93871..94740	99.425	870	0						
GCA_032763745.1_PDT001941146.1_genomic.fna	Salmonella_enterica	0.5214	682.779 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNXUD010000001.1 Salmonella enterica strain PNUSAS391537 SAMN37846521-rid19842743.denovo.01, whole genome shotgun sequence	397864..398301	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNXUD010000028.1 Salmonella enterica strain PNUSAS391537 SAMN37846521-rid19842743.guided.14, whole genome shotgun sequence	22221..22658	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXUD010000004.1	556041..556909	99.425	870	0						
GCA_032763765.1_PDT001941144.1_genomic.fna	Salmonella_enterica	0.5207	483.213 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNXUF010000001.1 Salmonella enterica strain PNUSAS391539 SAMN37846525-rid19843413.denovo.01, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNXUF010000044.1 Salmonella enterica strain PNUSAS391539 SAMN37846525-rid19843413.guided.22, whole genome shotgun sequence	16207..16644	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXUF010000009.1	101941..102810	99.655	870	0						
GCA_032763785.1_PDT001941143.1_genomic.fna	Salmonella_enterica	0.5229	385.513 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXUG010000008.1 Salmonella enterica strain PNUSAS391536 SAMN37846522-rid19842723.denovo.08, whole genome shotgun sequence	16987..17424	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXUG010000053.1 Salmonella enterica strain PNUSAS391536 SAMN37846522-rid19842723.guided.24, whole genome shotgun sequence	6009..6446	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032763805.1_PDT001941142.1_genomic.fna	Salmonella_enterica	0.5208	162.801 KB	9	aroC_1,dnaN_1,hemD_2,hisD_1,purE_484,sucA_1,thrA_5	2209	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	2	acrB_p.R717Q,gyrB_p.S464Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_484	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNXUH010000009.1 Salmonella enterica strain PNUSAS391541 SAMN37846529-rid19842713.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNXUH010000059.1 Salmonella enterica strain PNUSAS391541 SAMN37846529-rid19842713.guided.42, whole genome shotgun sequence	3984..4418	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										acrB p.R717Q	CGA -> CAA	R -> Q	Azithromycin	31730615	gyrB p.S464Y	TCT -> TAC	S -> Y	Ciprofloxacin	27896141																																																																																	
GCA_032763825.1_PDT001941141.1_genomic.fna	Salmonella_enterica	0.5206	344.808 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXUI010000012.1 Salmonella enterica strain PNUSAS391531 SAMN37846530-rid19842703.denovo.12, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNXUI010000019.1 Salmonella enterica strain PNUSAS391531 SAMN37846530-rid19842703.denovo.19, whole genome shotgun sequence	2806..3339																																																						avrA	ABNXUI010000013.1	153477..154345	99.54	870	0						
GCA_032763845.1_PDT001941140.1_genomic.fna	Salmonella_enterica	0.5213	322.706 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXUJ010000003.1 Salmonella enterica strain PNUSAS391534 SAMN37846527-rid19842693.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXUJ010000061.1 Salmonella enterica strain PNUSAS391534 SAMN37846527-rid19842693.guided.30, whole genome shotgun sequence	8806..9243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXUJ010000001.1	446755..447623	100	869	0						
GCA_032763865.1_PDT001941139.1_genomic.fna	Salmonella_enterica	0.5216	233.263 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXUK010000002.1 Salmonella enterica strain PNUSAS391540 SAMN37846526-rid19843403.denovo.02, whole genome shotgun sequence	150916..151353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXUK010000054.1 Salmonella enterica strain PNUSAS391540 SAMN37846526-rid19843403.guided.35, whole genome shotgun sequence	8805..9242	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNXUK010000030.1 Salmonella enterica strain PNUSAS391540 SAMN37846526-rid19843403.denovo.30, whole genome shotgun sequence	14207..14849																																																																	
GCA_032763885.1_PDT001941138.1_genomic.fna	Salmonella_enterica	0.5208	272.167 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,dfrA8,dfrA8	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXUL010000010.1 Salmonella enterica strain PNUSAS391529 SAMN37846524-rid19843393.denovo.10, whole genome shotgun sequence	115567..116004	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXUL010000073.1 Salmonella enterica strain PNUSAS391529 SAMN37846524-rid19843393.guided.42, whole genome shotgun sequence	649..1086	Amikacin, Tobramycin	NC_003197	dfrA8	100	510/510	ABNXUL010000050.1 Salmonella enterica strain PNUSAS391529 SAMN37846524-rid19843393.denovo.54, whole genome shotgun sequence	42..551	Trimethoprim	U10186	dfrA8	100	510/510	ABNXUL010000074.1 Salmonella enterica strain PNUSAS391529 SAMN37846524-rid19843393.guided.51, whole genome shotgun sequence	83..592	Trimethoprim	U10186																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNXUL010000030.1 Salmonella enterica strain PNUSAS391529 SAMN37846524-rid19843393.denovo.30, whole genome shotgun sequence	8838..8979																																																						avrA	ABNXUL010000008.1	97953..98821	100	869	0						
GCA_032764005.1_PDT001941132.1_genomic.fna	Salmonella_enterica	0.5225	625.966 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXUQ010000001.1 Salmonella enterica strain PNUSAS391742 SAMN37846516-rid19842653.denovo.01, whole genome shotgun sequence	458316..458753	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNXUQ010000025.1 Salmonella enterica strain PNUSAS391742 SAMN37846516-rid19842653.guided.19, whole genome shotgun sequence	5121..5558	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXUQ010000002.1	553816..554685	99.77	870	0						
GCA_032764135.1_PDT001940941.1_genomic.fna	Salmonella_enterica	0.5217	406.62 KB	5	aroC_22,dnaN_104,hemD_48,hisD_231,purE_114,sucA_107,thrA_4	1069	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_48	hisD	100	100	hisD_231	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNXUV010000001.1 Salmonella enterica strain PNUSAS391582 SAMN37844994-rid19837603.denovo.01, whole genome shotgun sequence	38296..38733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNXUV010000032.1 Salmonella enterica strain PNUSAS391582 SAMN37844994-rid19837603.guided.21, whole genome shotgun sequence	7719..8156	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXUV010000014.1	39667..40536	99.54	870	0						
GCA_032764185.1_PDT001940829.1_genomic.fna	Salmonella_enterica	0.5212	71.842 KB	24	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	-:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	ColRNAI,IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	-	Salmonella enterica subspecies enterica (subspecies I)	I -:i:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXUX010000056.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314576 SAMN37844073-rid19837283.denovo.056, whole genome shotgun sequence	12504..12941	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXUX010000123.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314576 SAMN37844073-rid19837283.denovo.128, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXUX010000123.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314576 SAMN37844073-rid19837283.denovo.128, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNXUX010000170.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314576 SAMN37844073-rid19837283.guided.103, whole genome shotgun sequence	4439..4876	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXUX010000173.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314576 SAMN37844073-rid19837283.guided.126, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXUX010000173.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314576 SAMN37844073-rid19837283.guided.126, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNXUX010000149.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314576 SAMN37844073-rid19837283.denovo.155, whole genome shotgun sequence	34..894	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNXUX010000174.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314576 SAMN37844073-rid19837283.guided.153, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNXUX010000123.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314576 SAMN37844073-rid19837283.denovo.128, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNXUX010000173.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314576 SAMN37844073-rid19837283.guided.126, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNXUX010000100.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314576 SAMN37844073-rid19837283.denovo.101, whole genome shotgun sequence	2380..3585	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNXUX010000172.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314576 SAMN37844073-rid19837283.guided.108, whole genome shotgun sequence	904..2109	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	ColRNAI	90.08	131 / 130	ABNXUX010000129.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314576 SAMN37844073-rid19837283.denovo.134, whole genome shotgun sequence	1293..1423	enterobacteriales	IncX1	98.66	374 / 374	ABNXUX010000145.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22314576 SAMN37844073-rid19837283.denovo.150, whole genome shotgun sequence	700..1073																																																avrA	ABNXUX010000011.1	93863..94732	99.885	870	0						
GCA_032764265.1_PDT001940751.1_genomic.fna	Salmonella_enterica	0.5226	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXVC010000001.1 Salmonella enterica strain PNUSAS391511 SAMN37831697-rid19838413.denovo.01, whole genome shotgun sequence	833827..834264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXVC010000026.1 Salmonella enterica strain PNUSAS391511 SAMN37831697-rid19838413.guided.20, whole genome shotgun sequence	2005..2442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXVC010000002.1	146984..147852	98.851	870	0						
GCA_032764285.1_PDT001940797.1_genomic.fna	Salmonella_enterica	0.5198	161.062 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNXUZ010000009.1 Salmonella enterica strain PNUSAS391617 SAMN37844022-rid19837143.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNXUZ010000054.1 Salmonella enterica strain PNUSAS391617 SAMN37844022-rid19837143.guided.37, whole genome shotgun sequence	8117..8551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																																						
GCA_032764305.1_PDT001940758.1_genomic.fna	Salmonella_enterica	0.5215	687.91 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXVA010000001.1 Salmonella enterica strain PNUSAS391489 SAMN37831696-rid19838443.denovo.01, whole genome shotgun sequence	414241..414678	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXVA010000020.1 Salmonella enterica strain PNUSAS391489 SAMN37831696-rid19838443.guided.18, whole genome shotgun sequence	5154..5591	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032764325.1_PDT001940746.1_genomic.fna	Salmonella_enterica	0.5219	243.079 KB	7	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNXVB010000002.1 Salmonella enterica strain PNUSAS391504 SAMN37831691-rid19838383.denovo.02, whole genome shotgun sequence	149873..150310	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNXVB010000044.1 Salmonella enterica strain PNUSAS391504 SAMN37831691-rid19838383.guided.31, whole genome shotgun sequence	11017..11454	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNXVB010000020.1 Salmonella enterica strain PNUSAS391504 SAMN37831691-rid19838383.denovo.20, whole genome shotgun sequence	22608..22749																																																						avrA	ABNXVB010000001.1	406124..406992	99.425	870	0						
GCA_032764345.1_PDT001940810.1_genomic.fna	Salmonella_enterica	0.5206	406.648 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXUY010000001.1 Salmonella enterica strain PNUSAS391620 SAMN37844024-rid19838593.denovo.01, whole genome shotgun sequence	414007..414444	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXUY010000040.1 Salmonella enterica strain PNUSAS391620 SAMN37844024-rid19838593.guided.21, whole genome shotgun sequence	38414..38851	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXUY010000009.1	173755..174623	99.195	870	0						
GCA_032764365.1_PDT001940713.1_genomic.fna	Salmonella_enterica	0.5215	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXVD010000001.1 Salmonella enterica strain PNUSAS391444 SAMN37831592-rid19838263.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXVD010000026.1 Salmonella enterica strain PNUSAS391444 SAMN37831592-rid19838263.guided.18, whole genome shotgun sequence	8847..9284	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXVD010000007.1 Salmonella enterica strain PNUSAS391444 SAMN37831592-rid19838263.denovo.07, whole genome shotgun sequence	181593..182235	enterobacteriales	IncFII(S)	100	262 / 262	ABNXVD010000018.1 Salmonella enterica strain PNUSAS391444 SAMN37831592-rid19838263.denovo.21, whole genome shotgun sequence	3392..3653																																																avrA	ABNXVD010000002.1	553636..554505	99.54	870	0						
GCA_032764385.1_PDT001940703.1_genomic.fna	Salmonella_enterica	0.5202	509.107 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),pXuzhou21	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXVE010000002.1 Salmonella enterica strain PNUSAS391439 SAMN37831584-rid19838233.denovo.02, whole genome shotgun sequence	495057..495494	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXVE010000029.1 Salmonella enterica strain PNUSAS391439 SAMN37831584-rid19838233.guided.20, whole genome shotgun sequence	17775..18212	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNXVE010000023.1 Salmonella enterica strain PNUSAS391439 SAMN37831584-rid19838233.denovo.25, whole genome shotgun sequence	2597..2727	enterobacteriales	pXuzhou21	99.86	720 / 720	ABNXVE010000017.1 Salmonella enterica strain PNUSAS391439 SAMN37831584-rid19838233.denovo.17, whole genome shotgun sequence	23692..24411																																																avrA	ABNXVE010000008.1	181835..182704	99.425	870	0						
GCA_032764685.1_PDT001940585.1_genomic.fna	Salmonella_enterica	0.5218	377.041 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQGOF010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -27 SAMN32778127-rid19836603.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQGOF010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -27 SAMN32778127-rid19836603.guided.30, whole genome shotgun sequence	3504..3941	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQGOF010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -27 SAMN32778127-rid19836603.denovo.15, whole genome shotgun sequence	48448..49090	enterobacteriales	IncFII(S)	100	262 / 262	DAQGOF010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium strain S. Typhimurium -27 SAMN32778127-rid19836603.denovo.15, whole genome shotgun sequence	64175..64436																																																avrA	DAQGOF010000006.1	174769..175637	100	869	0						
GCA_032764885.1_PDT001940053.1_genomic.fna	Salmonella_enterica	0.5204	262.766 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncFII(pCTU2),pESA2	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQGOQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00037807 SAMN37819744-rid19833963.denovo.01, whole genome shotgun sequence	302409..302846	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQGOQ010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00037807 SAMN37819744-rid19833963.guided.17, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQGOQ010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00037807 SAMN37819744-rid19833963.denovo.21, whole genome shotgun sequence	49120..49762	enterobacteriales	IncFII(S)	100	262 / 262	DAQGOQ010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00037807 SAMN37819744-rid19833963.denovo.21, whole genome shotgun sequence	4868..5129		enterobacteriales	IncFII(pCTU2)	97.23	577 / 577	DAQGOQ010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00037807 SAMN37819744-rid19833963.denovo.29, whole genome shotgun sequence	4742..5318		enterobacteriales	pESA2	98.4	750 / 750	DAQGOQ010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate AUSMDU00037807 SAMN37819744-rid19833963.denovo.29, whole genome shotgun sequence	21137..21886																																		avrA	DAQGOQ010000008.1	140783..141652	99.54	870	0						
GCA_032766615.1_PDT001787095.1_genomic.fna	Salmonella_enterica	0.5208	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXVP010000001.1 Salmonella enterica strain PNUSAS356751 SAMN35843554-rid18534943.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXVP010000021.1 Salmonella enterica strain PNUSAS356751 SAMN35843554-rid18534943.guided.11, whole genome shotgun sequence	22203..22640	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXVP010000014.1 Salmonella enterica strain PNUSAS356751 SAMN35843554-rid18534943.denovo.16, whole genome shotgun sequence	6836..7478	enterobacteriales	IncFII(S)	100	262 / 262	ABNXVP010000016.1 Salmonella enterica strain PNUSAS356751 SAMN35843554-rid18534943.denovo.18, whole genome shotgun sequence	3404..3665																																																avrA	ABNXVP010000002.1	553636..554505	99.54	870	0						
GCA_032766655.1_PDT001787094.1_genomic.fna	Salmonella_enterica	0.5223	762.445 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXVQ010000001.1 Salmonella enterica strain PNUSAS356742 SAMN35843552-rid18534933.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNXVQ010000017.1 Salmonella enterica strain PNUSAS356742 SAMN35843552-rid18534933.guided.10, whole genome shotgun sequence	40125..40562	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXVQ010000004.1	553510..554379	99.655	870	0						
GCA_032766685.1_PDT001787093.1_genomic.fna	Salmonella_enterica	0.5206	223.627 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNXVS010000001.1 Salmonella enterica strain PNUSAS357994 SAMN35843362-rid18535263.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNXVS010000042.1 Salmonella enterica strain PNUSAS357994 SAMN35843362-rid18535263.guided.23, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXVS010000003.1	208058..208926	99.77	870	0						
GCA_032766745.1_PDT001787084.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXVU010000001.1 Salmonella enterica strain PNUSAS357990 SAMN35843380-rid18534883.denovo.01, whole genome shotgun sequence	506015..506452	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXVU010000024.1 Salmonella enterica strain PNUSAS357990 SAMN35843380-rid18534883.guided.12, whole genome shotgun sequence	34818..35255	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXVU010000013.1 Salmonella enterica strain PNUSAS357990 SAMN35843380-rid18534883.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNXVU010000013.1 Salmonella enterica strain PNUSAS357990 SAMN35843380-rid18534883.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNXVU010000002.1	553636..554505	99.54	870	0						
GCA_032766775.1_PDT001787083.1_genomic.fna	Salmonella_enterica	0.5204	363.228 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXVW010000001.1 Salmonella enterica strain PNUSAS356752 SAMN35843555-rid18535213.denovo.01, whole genome shotgun sequence	772333..772770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXVW010000034.1 Salmonella enterica strain PNUSAS356752 SAMN35843555-rid18535213.guided.17, whole genome shotgun sequence	15865..16302	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXVW010000002.1	551339..552208	99.195	870	0						
GCA_032766795.1_PDT001787081.1_genomic.fna	Salmonella_enterica	0.5217	389.843 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_58,thrA_4	412	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC,ColpVC	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_58	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNXVV010000001.1 Salmonella enterica strain PNUSAS356745 SAMN35843549-rid18535203.denovo.01, whole genome shotgun sequence	625637..626074	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNXVV010000032.1 Salmonella enterica strain PNUSAS356745 SAMN35843549-rid18535203.guided.19, whole genome shotgun sequence	9270..9707	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	96.89	193 / 193	ABNXVV010000025.1 Salmonella enterica strain PNUSAS356745 SAMN35843549-rid18535203.denovo.28, whole genome shotgun sequence	1524..1716	enterobacteriales	ColpVC	98.96	193 / 193	ABNXVV010000027.1 Salmonella enterica strain PNUSAS356745 SAMN35843549-rid18535203.denovo.30, whole genome shotgun sequence	805..997																																																avrA	ABNXVV010000009.1	94148..95017	99.54	870	0						
GCA_032766815.1_PDT001787076.1_genomic.fna	Salmonella_enterica	0.521	686.408 KB	3	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXVY010000001.1 Salmonella enterica strain PNUSAS356749 SAMN35843558-rid18535173.denovo.01, whole genome shotgun sequence	403726..404163	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXVY010000028.1 Salmonella enterica strain PNUSAS356749 SAMN35843558-rid18535173.guided.18, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	ABNXVY010000020.1 Salmonella enterica strain PNUSAS356749 SAMN35843558-rid18535173.denovo.23, whole genome shotgun sequence	3345..3457																																																						avrA	ABNXVY010000003.1	140402..141271	99.425	870	0						
GCA_032766835.1_PDT001787075.1_genomic.fna	Salmonella_enterica	0.5213	429.905 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXVZ010000002.1 Salmonella enterica strain PNUSAS357992 SAMN35843376-rid18534843.denovo.02, whole genome shotgun sequence	383002..383439	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXVZ010000030.1 Salmonella enterica strain PNUSAS357992 SAMN35843376-rid18534843.guided.10, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII	95.42	262 / 261	ABNXVZ010000019.1 Salmonella enterica strain PNUSAS357992 SAMN35843376-rid18534843.denovo.21, whole genome shotgun sequence	10505..10764																																																						avrA	ABNXVZ010000012.1	93870..94739	99.195	870	0						
GCA_032766855.1_PDT001787072.1_genomic.fna	Salmonella_enterica	0.5208	529.542 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440I,ColRNAI	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNXWA010000001.1 Salmonella enterica strain PNUSAS357988 SAMN35843370-rid18534833.denovo.01, whole genome shotgun sequence	779768..780205	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNXWA010000026.1 Salmonella enterica strain PNUSAS357988 SAMN35843370-rid18534833.guided.14, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNXWA010000016.1 Salmonella enterica strain PNUSAS357988 SAMN35843370-rid18534833.denovo.19, whole genome shotgun sequence	239..369	enterobacteriales	Col440I	93.64	110 / 114	ABNXWA010000021.1 Salmonella enterica strain PNUSAS357988 SAMN35843370-rid18534833.denovo.24, whole genome shotgun sequence	1568..1677		enterobacteriales	ColRNAI	90.08	131 / 130	ABNXWA010000018.1 Salmonella enterica strain PNUSAS357988 SAMN35843370-rid18534833.denovo.21, whole genome shotgun sequence	4021..4151																																									avrA	ABNXWA010000002.1	561269..562138	99.425	870	0						
GCA_032766935.1_PDT001787066.1_genomic.fna	Salmonella_enterica	0.5207	431.028 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXWF010000010.1 Salmonella enterica strain PNUSAS356741 SAMN35843557-rid18535113.denovo.10, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXWF010000032.1 Salmonella enterica strain PNUSAS356741 SAMN35843557-rid18535113.guided.18, whole genome shotgun sequence	21829..22266	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNXWF010000016.1 Salmonella enterica strain PNUSAS356741 SAMN35843557-rid18535113.denovo.16, whole genome shotgun sequence	34957..35490																																																						avrA	ABNXWF010000002.1	153548..154414	98.966	870	0						
GCA_032766975.1_PDT001787064.1_genomic.fna	Salmonella_enterica	0.5221	378.753 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXWD010000003.1 Salmonella enterica strain PNUSAS358001 SAMN35843364-rid18535103.denovo.03, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXWD010000033.1 Salmonella enterica strain PNUSAS358001 SAMN35843364-rid18535103.guided.23, whole genome shotgun sequence	4093..4530	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXWD010000006.1	121710..122579	99.31	870	0						
GCA_032767015.1_PDT001787063.1_genomic.fna	Salmonella_enterica	0.5221	371.549 KB	6	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNXWE010000003.1 Salmonella enterica strain PNUSAS357984 SAMN35843365-rid18535093.denovo.03, whole genome shotgun sequence	303632..304069	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNXWE010000039.1 Salmonella enterica strain PNUSAS357984 SAMN35843365-rid18535093.guided.28, whole genome shotgun sequence	4832..5269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNXWE010000017.1 Salmonella enterica strain PNUSAS357984 SAMN35843365-rid18535093.denovo.17, whole genome shotgun sequence	42933..43074																																																						avrA	ABNXWE010000006.1	275705..276574	99.31	870	0						
GCA_032767095.1_PDT001787060.1_genomic.fna	Salmonella_enterica	0.5221	745.218 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXWK010000001.1 Salmonella enterica strain PNUSAS357999 SAMN35843381-rid18534783.denovo.01, whole genome shotgun sequence	645090..645527	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNXWK010000018.1 Salmonella enterica strain PNUSAS357999 SAMN35843381-rid18534783.guided.12, whole genome shotgun sequence	14549..14986	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXWK010000002.1	561608..562478	99.656	871	0						
GCA_032767115.1_PDT001787059.1_genomic.fna	Salmonella_enterica	0.5212	379.168 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXWM010000001.1 Salmonella enterica strain PNUSAS357995 SAMN35843361-rid18534773.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXWM010000034.1 Salmonella enterica strain PNUSAS357995 SAMN35843361-rid18534773.guided.22, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNXWM010000015.1 Salmonella enterica strain PNUSAS357995 SAMN35843361-rid18534773.denovo.15, whole genome shotgun sequence	69195..69336																																																						avrA	ABNXWM010000005.1	122089..122958	99.31	870	0						
GCA_032767135.1_PDT001787058.1_genomic.fna	Salmonella_enterica	0.5218	334.313 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXWN010000001.1 Salmonella enterica strain PNUSAS357986 SAMN35843373-rid18535073.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXWN010000038.1 Salmonella enterica strain PNUSAS357986 SAMN35843373-rid18535073.guided.23, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXWN010000005.1	94202..95071	99.31	870	0						
GCA_032767155.1_PDT001787052.1_genomic.fna	Salmonella_enterica	0.5211	394.778 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXWP010000001.1 Salmonella enterica strain PNUSAS356746 SAMN35843556-rid18534743.denovo.01, whole genome shotgun sequence	482310..482747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXWP010000027.1 Salmonella enterica strain PNUSAS356746 SAMN35843556-rid18534743.guided.17, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXWP010000002.1	145182..146051	99.31	870	0						
GCA_032767175.1_PDT001787056.1_genomic.fna	Salmonella_enterica	0.523	474.975 KB	4	aroC_111,dnaN_109,hemD_17,hisD_149,purE_41,sucA_13,thrA_23	451	28:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_109	hemD	100	100	hemD_17	hisD	100	100	hisD_149	purE	100	100	purE_41	sucA	100	100	sucA_13	thrA	100	100	thrA_23	28	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Pomona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXWL010000001.1 Salmonella enterica strain PNUSAS357993 SAMN35843375-rid18535063.denovo.01, whole genome shotgun sequence	620459..620896	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXWL010000026.1 Salmonella enterica strain PNUSAS357993 SAMN35843375-rid18535063.guided.09, whole genome shotgun sequence	26582..27019	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXWL010000010.1	39348..40217	99.54	870	0						
GCA_032767195.1_PDT001787055.1_genomic.fna	Salmonella_enterica	0.5161	347.333 KB	6	aroC_378,dnaN_26,hemD_30,hisD_55,purE_21,sucA_28,thrA_28	2055	50:k:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_378	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_55	purE	100	100	purE_21	sucA	100	100	sucA_28	thrA	100	100	thrA_28	50	k	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 50:k:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNXWO010000009.1 Salmonella enterica strain PNUSAS357996 SAMN35843369-rid18534753.denovo.09, whole genome shotgun sequence	119036..119473	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNXWO010000040.1 Salmonella enterica strain PNUSAS357996 SAMN35843369-rid18534753.guided.19, whole genome shotgun sequence	39999..40436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXWO010000001.1	89815..90684	96.437	870	0						
GCA_032767215.1_PDT001787050.1_genomic.fna	Salmonella_enterica	0.5212	680.165 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNXWR010000001.1 Salmonella enterica strain PNUSAS357998 SAMN35843382-rid18534733.denovo.01, whole genome shotgun sequence	510328..510765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNXWR010000020.1 Salmonella enterica strain PNUSAS357998 SAMN35843382-rid18534733.guided.11, whole genome shotgun sequence	4269..4706	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXWR010000002.1	544792..545660	99.425	870	0						
GCA_032767235.1_PDT001787051.1_genomic.fna	Salmonella_enterica	0.5209	466.652 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXWQ010000001.1 Salmonella enterica strain PNUSAS356750 SAMN35843550-rid18535033.denovo.01, whole genome shotgun sequence	674253..674690	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXWQ010000023.1 Salmonella enterica strain PNUSAS356750 SAMN35843550-rid18535033.guided.19, whole genome shotgun sequence	4350..4787	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNXWQ010000013.1 Salmonella enterica strain PNUSAS356750 SAMN35843550-rid18535033.denovo.13, whole genome shotgun sequence	2545..3078																																																						avrA	ABNXWQ010000009.1	150704..151574	99.196	871	0						
GCA_032767255.1_PDT001787049.1_genomic.fna	Salmonella_enterica	0.5214	729.377 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXWS010000001.1 Salmonella enterica strain PNUSAS356744 SAMN35843551-rid18534723.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXWS010000021.1 Salmonella enterica strain PNUSAS356744 SAMN35843551-rid18534723.guided.14, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXWS010000015.1 Salmonella enterica strain PNUSAS356744 SAMN35843551-rid18534723.denovo.17, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNXWS010000016.1 Salmonella enterica strain PNUSAS356744 SAMN35843551-rid18534723.denovo.19, whole genome shotgun sequence	3390..3651																																																avrA	ABNXWS010000003.1	553312..554181	99.54	870	0						
GCA_032767275.1_PDT001787048.1_genomic.fna	Salmonella_enterica	0.5226	333 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXWT010000001.1 Salmonella enterica strain PNUSAS358002 SAMN35843372-rid18535023.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNXWT010000033.1 Salmonella enterica strain PNUSAS358002 SAMN35843372-rid18535023.guided.19, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXWT010000002.1	149827..150696	99.655	870	0						
GCA_032767295.1_PDT001787045.1_genomic.fna	Salmonella_enterica	0.5211	433.187 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXWU010000001.1 Salmonella enterica strain PNUSAS356748 SAMN35843553-rid18534703.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXWU010000022.1 Salmonella enterica strain PNUSAS356748 SAMN35843553-rid18534703.guided.16, whole genome shotgun sequence	1780..2217	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXWU010000015.1 Salmonella enterica strain PNUSAS356748 SAMN35843553-rid18534703.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNXWU010000016.1 Salmonella enterica strain PNUSAS356748 SAMN35843553-rid18534703.denovo.19, whole genome shotgun sequence	3402..3663																																																avrA	ABNXWU010000002.1	553636..554505	99.54	870	0						
GCA_032767315.1_PDT001787043.1_genomic.fna	Salmonella_enterica	0.5206	525.04 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXWV010000002.1 Salmonella enterica strain PNUSAS357989 SAMN35843367-rid18534993.denovo.02, whole genome shotgun sequence	477698..478135	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXWV010000022.1 Salmonella enterica strain PNUSAS357989 SAMN35843367-rid18534993.guided.18, whole genome shotgun sequence	7592..8029	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXWV010000001.1	559530..560398	99.31	870	0						
GCA_032767335.1_PDT001787042.1_genomic.fna	Salmonella_enterica	0.522	728.62 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXWW010000001.1 Salmonella enterica strain PNUSAS357987 SAMN35843366-rid18534523.denovo.01, whole genome shotgun sequence	645015..645452	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNXWW010000019.1 Salmonella enterica strain PNUSAS357987 SAMN35843366-rid18534523.guided.11, whole genome shotgun sequence	24732..25169	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	96.89	193 / 193	ABNXWW010000014.1 Salmonella enterica strain PNUSAS357987 SAMN35843366-rid18534523.denovo.17, whole genome shotgun sequence	195..387																																																						avrA	ABNXWW010000003.1	562148..563018	99.656	871	0						
GCA_032767355.1_PDT001787041.1_genomic.fna	Salmonella_enterica	0.522	382.651 KB	5	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNXWX010000001.1 Salmonella enterica strain PNUSAS357997 SAMN35843368-rid18534693.denovo.01, whole genome shotgun sequence	307821..308258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNXWX010000025.1 Salmonella enterica strain PNUSAS357997 SAMN35843368-rid18534693.guided.17, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032767375.1_PDT001787040.1_genomic.fna	Salmonella_enterica	0.5227	513.938 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNXWY010000001.1 Salmonella enterica strain PNUSAS357985 SAMN35843371-rid18534513.denovo.01, whole genome shotgun sequence	666959..667396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNXWY010000026.1 Salmonella enterica strain PNUSAS357985 SAMN35843371-rid18534513.guided.15, whole genome shotgun sequence	15915..16352	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNXWY010000003.1	510006..510875	99.31	870	0						
GCA_032767435.1_PDT001787036.1_genomic.fna	Salmonella_enterica	0.5214	682.831 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNXXA010000001.1 Salmonella enterica strain PNUSAS357991 SAMN35843374-rid18534673.denovo.01, whole genome shotgun sequence	397877..398314	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNXXA010000039.1 Salmonella enterica strain PNUSAS357991 SAMN35843374-rid18534673.guided.21, whole genome shotgun sequence	7795..8232	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	93.5	446 / 445	ABNXXA010000012.1 Salmonella enterica strain PNUSAS357991 SAMN35843374-rid18534673.denovo.12, whole genome shotgun sequence	30865..31309	enterobacteriales	IncFII(Yp)	91.67	216 / 230	ABNXXA010000012.1 Salmonella enterica strain PNUSAS357991 SAMN35843374-rid18534673.denovo.12, whole genome shotgun sequence	31570..31784																																																avrA	ABNXXA010000002.1	544607..545475	99.425	870	0						
GCA_032767475.1_PDT001787039.1_genomic.fna	Salmonella_enterica	0.5213	490.178 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXWZ010000002.1 Salmonella enterica strain PNUSAS358000 SAMN35843363-rid18534503.denovo.02, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXWZ010000030.1 Salmonella enterica strain PNUSAS358000 SAMN35843363-rid18534503.guided.20, whole genome shotgun sequence	2666..3103	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXWZ010000014.1 Salmonella enterica strain PNUSAS358000 SAMN35843363-rid18534503.denovo.14, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABNXWZ010000018.1 Salmonella enterica strain PNUSAS358000 SAMN35843363-rid18534503.denovo.21, whole genome shotgun sequence	3446..3707																																																avrA	ABNXWZ010000001.1	585342..586211	99.54	870	0						
GCA_032767535.1_PDT001787004.1_genomic.fna	Salmonella_enterica	0.5215	79.968 KB	18	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXXE010000001.1 Salmonella enterica strain PNUSAS357953 SAMN35842290-rid18534593.denovo.001, whole genome shotgun sequence	12453..12890	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXXE010000128.1 Salmonella enterica strain PNUSAS357953 SAMN35842290-rid18534593.guided.085, whole genome shotgun sequence	7459..7896	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNXXE010000100.1 Salmonella enterica strain PNUSAS357953 SAMN35842290-rid18534593.denovo.103, whole genome shotgun sequence	1905..2035																																																						avrA	ABNXXE010000004.1	99065..99934	98.966	870	0						
GCA_032767555.1_PDT001786990.1_genomic.fna	Salmonella_enterica	0.5212	478.496 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXXH010000001.1 Salmonella enterica strain PNUSAS357914 SAMN35842089-rid18534153.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXXH010000028.1 Salmonella enterica strain PNUSAS357914 SAMN35842089-rid18534153.guided.15, whole genome shotgun sequence	29734..30171	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXXH010000018.1 Salmonella enterica strain PNUSAS357914 SAMN35842089-rid18534153.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNXXH010000020.1 Salmonella enterica strain PNUSAS357914 SAMN35842089-rid18534153.denovo.23, whole genome shotgun sequence	3397..3658																																																avrA	ABNXXH010000002.1	553302..554171	99.54	870	0						
GCA_032767715.1_PDT001786967.1_genomic.fna	Salmonella_enterica	0.5218	147.129 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXXQ010000008.1 Salmonella enterica strain PNUSAS357956 SAMN35842146-rid18533833.denovo.08, whole genome shotgun sequence	17256..17693	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXXQ010000083.1 Salmonella enterica strain PNUSAS357956 SAMN35842146-rid18533833.guided.38, whole genome shotgun sequence	12429..12866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXXQ010000053.1 Salmonella enterica strain PNUSAS357956 SAMN35842146-rid18533833.denovo.54, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNXXQ010000031.1 Salmonella enterica strain PNUSAS357956 SAMN35842146-rid18533833.denovo.31, whole genome shotgun sequence	5032..5293																																																avrA	ABNXXQ010000010.1	149420..150289	99.54	870	0						
GCA_032767755.1_PDT001786966.1_genomic.fna	Salmonella_enterica	0.5228	102.68 KB	14	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXXR010000002.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.denovo.02, whole genome shotgun sequence	79097..79534	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNXXR010000066.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.denovo.69, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNXXR010000082.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.guided.49, whole genome shotgun sequence	20568..21005	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNXXR010000088.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.guided.75, whole genome shotgun sequence	2772..3551	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNXXR010000066.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.denovo.69, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNXXR010000088.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.guided.75, whole genome shotgun sequence	1776..2642	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNXXR010000063.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.denovo.66, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNXXR010000085.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.guided.71, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNXXR010000058.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.denovo.60, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNXXR010000086.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.guided.73, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNXXR010000087.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.guided.74, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNXXR010000066.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.denovo.69, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNXXR010000088.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.guided.75, whole genome shotgun sequence	860..1516	Ciprofloxacin	AY070235	sul1	100	840/840	ABNXXR010000071.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.denovo.80, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNXXR010000090.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.guided.79, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNXXR010000058.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.denovo.60, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNXXR010000089.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.guided.76, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNXXR010000058.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.denovo.60, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNXXR010000089.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.guided.76, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNXXR010000053.1 Salmonella enterica strain PNUSAS357958 SAMN35842142-rid18533823.denovo.54, whole genome shotgun sequence	4434..4684																																																						avrA	ABNXXR010000007.1	114784..115653	99.77	870	0						
GCA_032767835.1_PDT001786946.1_genomic.fna	Salmonella_enterica	0.521	68.28 KB	22	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	-:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	-	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXXV010000021.1 Salmonella enterica strain PNUSAS357962 SAMN35842145-rid18533633.denovo.021, whole genome shotgun sequence	17203..17640	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXXV010000149.1 Salmonella enterica strain PNUSAS357962 SAMN35842145-rid18533633.guided.072, whole genome shotgun sequence	8847..9284	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNXXV010000067.1 Salmonella enterica strain PNUSAS357962 SAMN35842145-rid18533633.denovo.068, whole genome shotgun sequence	17968..18390	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNXXV010000151.1 Salmonella enterica strain PNUSAS357962 SAMN35842145-rid18533633.guided.100, whole genome shotgun sequence	4979..5401	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXXV010000012.1	81826..82695	99.195	870	0						
GCA_032767895.1_PDT001786910.1_genomic.fna	Salmonella_enterica	0.5217	95.178 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXXX010000007.1 Salmonella enterica strain PNUSAS357959 SAMN35842148-rid18533313.denovo.07, whole genome shotgun sequence	17227..17664	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXXX010000087.1 Salmonella enterica strain PNUSAS357959 SAMN35842148-rid18533313.guided.43, whole genome shotgun sequence	24926..25363	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXXX010000032.1 Salmonella enterica strain PNUSAS357959 SAMN35842148-rid18533313.denovo.32, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNXXX010000032.1 Salmonella enterica strain PNUSAS357959 SAMN35842148-rid18533313.denovo.32, whole genome shotgun sequence	4416..4677																																																avrA	ABNXXX010000037.1	43556..44425	99.54	870	0						
GCA_032767915.1_PDT001786904.1_genomic.fna	Salmonella_enterica	0.5218	97.26 KB	17	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXXZ010000015.1 Salmonella enterica strain PNUSAS357955 SAMN35842288-rid18533253.denovo.15, whole genome shotgun sequence	62417..62854	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNXXZ010000052.1 Salmonella enterica strain PNUSAS357955 SAMN35842288-rid18533253.denovo.53, whole genome shotgun sequence	22896..23687	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNXXZ010000052.1 Salmonella enterica strain PNUSAS357955 SAMN35842288-rid18533253.denovo.53, whole genome shotgun sequence	22896..23687	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNXXZ010000091.1 Salmonella enterica strain PNUSAS357955 SAMN35842288-rid18533253.guided.55, whole genome shotgun sequence	20663..21100	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNXXZ010000094.1 Salmonella enterica strain PNUSAS357955 SAMN35842288-rid18533253.guided.71, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNXXZ010000094.1 Salmonella enterica strain PNUSAS357955 SAMN35842288-rid18533253.guided.71, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNXXZ010000073.1 Salmonella enterica strain PNUSAS357955 SAMN35842288-rid18533253.denovo.78, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNXXZ010000095.1 Salmonella enterica strain PNUSAS357955 SAMN35842288-rid18533253.guided.79, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNXXZ010000076.1 Salmonella enterica strain PNUSAS357955 SAMN35842288-rid18533253.denovo.82, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABNXXZ010000096.1 Salmonella enterica strain PNUSAS357955 SAMN35842288-rid18533253.guided.85, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABNXXZ010000052.1 Salmonella enterica strain PNUSAS357955 SAMN35842288-rid18533253.denovo.53, whole genome shotgun sequence	21552..22391	Sulfamethoxazole	U12338	sul1	100	840/840	ABNXXZ010000094.1 Salmonella enterica strain PNUSAS357955 SAMN35842288-rid18533253.guided.71, whole genome shotgun sequence	2393..3232	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNXXZ010000052.1 Salmonella enterica strain PNUSAS357955 SAMN35842288-rid18533253.denovo.53, whole genome shotgun sequence	7836..9035	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNXXZ010000092.1 Salmonella enterica strain PNUSAS357955 SAMN35842288-rid18533253.guided.57, whole genome shotgun sequence	1754..2953	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNXXZ010000027.1 Salmonella enterica strain PNUSAS357955 SAMN35842288-rid18533253.denovo.27, whole genome shotgun sequence	58569..59128																																																						avrA	ABNXXZ010000017.1	94091..94960	99.655	870	0						
GCA_032767955.1_PDT001786903.1_genomic.fna	Salmonella_enterica	0.5225	65.3 KB	23	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXYA010000021.1 Salmonella enterica strain PNUSAS357960 SAMN35842143-rid18533243.denovo.021, whole genome shotgun sequence	17249..17686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXYA010000152.1 Salmonella enterica strain PNUSAS357960 SAMN35842143-rid18533243.guided.069, whole genome shotgun sequence	15327..15764	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXYA010000080.1 Salmonella enterica strain PNUSAS357960 SAMN35842143-rid18533243.denovo.081, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNXYA010000096.1 Salmonella enterica strain PNUSAS357960 SAMN35842143-rid18533243.denovo.098, whole genome shotgun sequence	3435..3696																																																avrA	ABNXYA010000024.1	62008..62877	99.54	870	0						
GCA_032768095.1_PDT001786851.1_genomic.fna	Salmonella_enterica	0.5207	127.175 KB	11	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXYR010000003.1 Salmonella enterica strain PNUSAS357961 SAMN35842147-rid18532783.denovo.03, whole genome shotgun sequence	120793..121230	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXYR010000069.1 Salmonella enterica strain PNUSAS357961 SAMN35842147-rid18532783.guided.36, whole genome shotgun sequence	33348..33785	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXYR010000030.1	43578..44447	99.425	870	0						
GCA_032768115.1_PDT001786850.1_genomic.fna	Salmonella_enterica	0.522	225.555 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNXYT010000001.1 Salmonella enterica strain PNUSAS357885 SAMN35841316-rid18532773.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNXYT010000049.1 Salmonella enterica strain PNUSAS357885 SAMN35841316-rid18532773.guided.35, whole genome shotgun sequence	8082..8519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNXYT010000027.1 Salmonella enterica strain PNUSAS357885 SAMN35841316-rid18532773.denovo.27, whole genome shotgun sequence	44730..45372	enterobacteriales	IncFII(S)	100	262 / 262	ABNXYT010000027.1 Salmonella enterica strain PNUSAS357885 SAMN35841316-rid18532773.denovo.27, whole genome shotgun sequence	29384..29645																																																avrA	ABNXYT010000005.1	133113..133981	100	869	0						
GCA_032768175.1_PDT001786877.1_genomic.fna	Salmonella_enterica	0.5224	134.036 KB	10	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXYI010000001.1 Salmonella enterica strain PNUSAS357957 SAMN35842289-rid18533003.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNXYI010000062.1 Salmonella enterica strain PNUSAS357957 SAMN35842289-rid18533003.guided.42, whole genome shotgun sequence	10868..11305	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032768215.1_PDT001786874.1_genomic.fna	Salmonella_enterica	0.5218	103.297 KB	16	aroC_71,dnaN_65,hemD_67,hisD_75,purE_73,sucA_9,thrA_64	217	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),p0111	aroC	100	100	aroC_71	dnaN	100	100	dnaN_65	hemD	100	100	hemD_67	hisD	100	100	hisD_75	purE	100	100	purE_73	sucA	100	100	sucA_9	thrA	100	100	thrA_64	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNXYL010000002.1 Salmonella enterica strain PNUSAS357887 SAMN35841313-rid18532973.denovo.02, whole genome shotgun sequence	63244..63681	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNXYL010000091.1 Salmonella enterica strain PNUSAS357887 SAMN35841313-rid18532973.guided.52, whole genome shotgun sequence	16445..16882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNXYL010000080.1 Salmonella enterica strain PNUSAS357887 SAMN35841313-rid18532973.denovo.83, whole genome shotgun sequence	547..675	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNXYL010000082.1 Salmonella enterica strain PNUSAS357887 SAMN35841313-rid18532973.denovo.85, whole genome shotgun sequence	667..797		enterobacteriales	p0111	98.87	885 / 885	ABNXYL010000044.1 Salmonella enterica strain PNUSAS357887 SAMN35841313-rid18532973.denovo.44, whole genome shotgun sequence	338..1222																																									avrA	ABNXYL010000025.1	39487..40356	99.195	870	0						
GCA_032768295.1_PDT001786854.1_genomic.fna	Salmonella_enterica	0.5243	43.457 KB	34	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	-:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	-	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXYP010000012.1 Salmonella enterica strain PNUSAS357963 SAMN35842144-rid18532813.denovo.012, whole genome shotgun sequence	11306..11743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNXYP010000193.1 Salmonella enterica strain PNUSAS357963 SAMN35842144-rid18532813.guided.124, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNXYP010000095.1 Salmonella enterica strain PNUSAS357963 SAMN35842144-rid18532813.denovo.095, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNXYP010000192.1 Salmonella enterica strain PNUSAS357963 SAMN35842144-rid18532813.guided.120, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNXYP010000095.1 Salmonella enterica strain PNUSAS357963 SAMN35842144-rid18532813.denovo.095, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNXYP010000195.1 Salmonella enterica strain PNUSAS357963 SAMN35842144-rid18532813.guided.151, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNXYP010000095.1 Salmonella enterica strain PNUSAS357963 SAMN35842144-rid18532813.denovo.095, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNXYP010000192.1 Salmonella enterica strain PNUSAS357963 SAMN35842144-rid18532813.guided.120, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNXYP010000095.1 Salmonella enterica strain PNUSAS357963 SAMN35842144-rid18532813.denovo.095, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNXYP010000192.1 Salmonella enterica strain PNUSAS357963 SAMN35842144-rid18532813.guided.120, whole genome shotgun sequence	9840..11114	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNXYP010000095.1 Salmonella enterica strain PNUSAS357963 SAMN35842144-rid18532813.denovo.095, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNXYP010000192.1 Salmonella enterica strain PNUSAS357963 SAMN35842144-rid18532813.guided.120, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNXYP010000082.1 Salmonella enterica strain PNUSAS357963 SAMN35842144-rid18532813.denovo.082, whole genome shotgun sequence	4434..4684																																																						avrA	ABNXYP010000007.1	83838..84707	99.77	870	0						
GCA_032768315.1_PDT001786853.1_genomic.fna	Salmonella_enterica	0.5226	161.635 KB	10	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXYQ010000001.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.denovo.01, whole genome shotgun sequence	263796..264233	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNXYQ010000057.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.denovo.61, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNXYQ010000068.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.guided.31, whole genome shotgun sequence	24943..25380	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNXYQ010000071.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.guided.60, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNXYQ010000057.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.denovo.61, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNXYQ010000071.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.guided.60, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNXYQ010000055.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.denovo.58, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNXYQ010000074.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.guided.65, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNXYQ010000053.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.denovo.56, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNXYQ010000072.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.guided.63, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNXYQ010000057.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.denovo.61, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNXYQ010000071.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.guided.60, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNXYQ010000060.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.denovo.68, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNXYQ010000075.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.guided.67, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNXYQ010000053.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.denovo.56, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNXYQ010000073.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.guided.64, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNXYQ010000053.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.denovo.56, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNXYQ010000073.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.guided.64, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNXYQ010000045.1 Salmonella enterica strain PNUSAS357954 SAMN35842141-rid18532803.denovo.46, whole genome shotgun sequence	4434..4684																																																						avrA	ABNXYQ010000006.1	140314..141183	99.77	870	0						
GCA_032768335.1_PDT001786852.1_genomic.fna	Salmonella_enterica	0.5199	157.646 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaCTX-M-15,blaTEM-1B,blaCTX-M-15,blaCTX-M-15,blaTEM-1B,catA1,catA1,qnrS1,qnrS1,sul1,sul2,sul1,sul2,sul2,sul2,sul2,dfrA7,dfrA7	1	gyrA_p.S83F	1	IncY	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNXYS010000009.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXYS010000056.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.denovo.63, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNXYS010000056.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.denovo.63, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	ABNXYS010000075.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXYS010000082.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.guided.73, whole genome shotgun sequence	821..1657	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNXYS010000082.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.guided.73, whole genome shotgun sequence	18..821	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNXYS010000083.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.guided.74, whole genome shotgun sequence	821..1657	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXYS010000083.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.guided.74, whole genome shotgun sequence	18..821	Streptomycin	AF321551	blaCTX-M-15	100	876/876	ABNXYS010000044.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.denovo.47, whole genome shotgun sequence	14193..15068	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	ABNXYS010000067.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.denovo.78, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-15	100	876/876	ABNXYS010000078.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.guided.60, whole genome shotgun sequence	2426..3301	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	99.89	876/876	ABNXYS010000079.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.guided.61, whole genome shotgun sequence	2426..3301	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	ABNXYS010000084.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.guided.77, whole genome shotgun sequence	437..1297	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	ABNXYS010000048.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.denovo.52, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	ABNXYS010000081.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.guided.70, whole genome shotgun sequence	262..921	Chloramphenicol	V00622	qnrS1	100	657/657	ABNXYS010000044.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.denovo.47, whole genome shotgun sequence	8896..9552	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNXYS010000077.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.guided.51, whole genome shotgun sequence	1455..2111	Ciprofloxacin	AB187515	sul1	100	840/840	ABNXYS010000048.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.denovo.52, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	ABNXYS010000056.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.denovo.63, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABNXYS010000080.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.guided.62, whole genome shotgun sequence	4845..5684	Sulfamethoxazole	U12338	sul2	100	816/816	ABNXYS010000085.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.guided.81, whole genome shotgun sequence	93..908	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNXYS010000086.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.guided.82, whole genome shotgun sequence	93..908	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNXYS010000087.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.guided.83, whole genome shotgun sequence	93..908	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNXYS010000088.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.guided.84, whole genome shotgun sequence	93..908	Sulfamethoxazole	AY034138	dfrA7	100	474/474	ABNXYS010000048.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.denovo.52, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	ABNXYS010000080.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.guided.62, whole genome shotgun sequence	3801..4274	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																		gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncY	98.82	765 / 765	ABNXYS010000039.1 Salmonella enterica strain PNUSAS357913 SAMN35842090-rid18532793.denovo.42, whole genome shotgun sequence	3031..3795																																																																	
GCA_032768355.1_PDT001786849.1_genomic.fna	Salmonella_enterica	0.5219	723.691 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	7	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	ColRNAI,IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNXYU010000001.1 Salmonella enterica strain PNUSAS357904 SAMN35840508-rid18532763.denovo.01, whole genome shotgun sequence	687395..687832	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNXYU010000018.1 Salmonella enterica strain PNUSAS357904 SAMN35840508-rid18532763.denovo.22, whole genome shotgun sequence	1754..2569	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aac(6')-Iaa	99.54	438/438	ABNXYU010000029.1 Salmonella enterica strain PNUSAS357904 SAMN35840508-rid18532763.guided.18, whole genome shotgun sequence	3029..3466	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNXYU010000031.1 Salmonella enterica strain PNUSAS357904 SAMN35840508-rid18532763.guided.23, whole genome shotgun sequence	4375..5190	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	mph(A)	99.89	906/906	ABNXYU010000015.1 Salmonella enterica strain PNUSAS357904 SAMN35840508-rid18532763.denovo.17, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNXYU010000030.1 Salmonella enterica strain PNUSAS357904 SAMN35840508-rid18532763.guided.21, whole genome shotgun sequence	6167..7072	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNXYU010000015.1 Salmonella enterica strain PNUSAS357904 SAMN35840508-rid18532763.denovo.17, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNXYU010000032.1 Salmonella enterica strain PNUSAS357904 SAMN35840508-rid18532763.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNXYU010000015.1 Salmonella enterica strain PNUSAS357904 SAMN35840508-rid18532763.denovo.17, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNXYU010000030.1 Salmonella enterica strain PNUSAS357904 SAMN35840508-rid18532763.guided.21, whole genome shotgun sequence	17..856	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNXYU010000015.1 Salmonella enterica strain PNUSAS357904 SAMN35840508-rid18532763.denovo.17, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNXYU010000033.1 Salmonella enterica strain PNUSAS357904 SAMN35840508-rid18532763.guided.28, whole genome shotgun sequence	2700..3974	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNXYU010000015.1 Salmonella enterica strain PNUSAS357904 SAMN35840508-rid18532763.denovo.17, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNXYU010000033.1 Salmonella enterica strain PNUSAS357904 SAMN35840508-rid18532763.guided.28, whole genome shotgun sequence	1069..1542	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNXYU010000021.1 Salmonella enterica strain PNUSAS357904 SAMN35840508-rid18532763.denovo.26, whole genome shotgun sequence	3981..4111	enterobacteriales	IncR	100	251 / 251	ABNXYU010000014.1 Salmonella enterica strain PNUSAS357904 SAMN35840508-rid18532763.denovo.16, whole genome shotgun sequence	4434..4684																																																avrA	ABNXYU010000003.1	553479..554348	99.77	870	0						
GCA_032768375.1_PDT001786848.1_genomic.fna	Salmonella_enterica	0.5209	477.33 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXYV010000001.1 Salmonella enterica strain 23CT06CB01-S1 SAMN35842091-rid18532753.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXYV010000028.1 Salmonella enterica strain 23CT06CB01-S1 SAMN35842091-rid18532753.guided.15, whole genome shotgun sequence	18362..18799	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXYV010000017.1 Salmonella enterica strain 23CT06CB01-S1 SAMN35842091-rid18532753.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNXYV010000019.1 Salmonella enterica strain 23CT06CB01-S1 SAMN35842091-rid18532753.denovo.22, whole genome shotgun sequence	3423..3684																																																avrA	ABNXYV010000002.1	553077..553946	99.54	870	0						
GCA_032768395.1_PDT001786847.1_genomic.fna	Salmonella_enterica	0.5217	245.14 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,blaCTX-M-65,blaCTX-M-65,sul1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNXYW010000001.1 Salmonella enterica strain PNUSAS357882 SAMN35841317-rid18532743.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNXYW010000026.1 Salmonella enterica strain PNUSAS357882 SAMN35841317-rid18532743.denovo.26, whole genome shotgun sequence	1577..2368	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNXYW010000026.1 Salmonella enterica strain PNUSAS357882 SAMN35841317-rid18532743.denovo.26, whole genome shotgun sequence	1577..2368	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNXYW010000054.1 Salmonella enterica strain PNUSAS357882 SAMN35841317-rid18532743.guided.36, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNXYW010000054.1 Salmonella enterica strain PNUSAS357882 SAMN35841317-rid18532743.guided.36, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aadA1	99.62	792/792	ABNXYW010000055.1 Salmonella enterica strain PNUSAS357882 SAMN35841317-rid18532743.guided.37, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.62	792/792	ABNXYW010000055.1 Salmonella enterica strain PNUSAS357882 SAMN35841317-rid18532743.guided.37, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNXYW010000056.1 Salmonella enterica strain PNUSAS357882 SAMN35841317-rid18532743.guided.46, whole genome shotgun sequence	2412..2849	Amikacin, Tobramycin	NC_003197	blaCTX-M-65	100	876/876	ABNXYW010000017.1 Salmonella enterica strain PNUSAS357882 SAMN35841317-rid18532743.denovo.17, whole genome shotgun sequence	66482..67357	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNXYW010000057.1 Salmonella enterica strain PNUSAS357882 SAMN35841317-rid18532743.guided.47, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNXYW010000026.1 Salmonella enterica strain PNUSAS357882 SAMN35841317-rid18532743.denovo.26, whole genome shotgun sequence	2873..3712	Sulfamethoxazole	U12338	sul1	100	840/840	ABNXYW010000054.1 Salmonella enterica strain PNUSAS357882 SAMN35841317-rid18532743.guided.36, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	sul1	100	840/840	ABNXYW010000055.1 Salmonella enterica strain PNUSAS357882 SAMN35841317-rid18532743.guided.37, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNXYW010000026.1 Salmonella enterica strain PNUSAS357882 SAMN35841317-rid18532743.denovo.26, whole genome shotgun sequence	16229..17428	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNXYW010000058.1 Salmonella enterica strain PNUSAS357882 SAMN35841317-rid18532743.guided.48, whole genome shotgun sequence	825..2024	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																															gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNXYW010000031.1 Salmonella enterica strain PNUSAS357882 SAMN35841317-rid18532743.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABNXYW010000003.1	149828..150697	99.655	870	0						
GCA_032768935.1_PDT001786818.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNXZX010000001.1 Salmonella enterica strain PNUSAS357901 SAMN35840505-rid18532453.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNXZX010000018.1 Salmonella enterica strain PNUSAS357901 SAMN35840505-rid18532453.guided.16, whole genome shotgun sequence	2153..2590	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNXZX010000011.1 Salmonella enterica strain PNUSAS357901 SAMN35840505-rid18532453.denovo.12, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	ABNXZX010000013.1 Salmonella enterica strain PNUSAS357901 SAMN35840505-rid18532453.denovo.15, whole genome shotgun sequence	3405..3666																																																avrA	ABNXZX010000002.1	553642..554511	99.54	870	0						
GCA_032768955.1_PDT001786819.1_genomic.fna	Salmonella_enterica	0.519	359.848 KB	5	aroC_25,dnaN_77,hemD_27,hisD_22,purE_18,sucA_131,thrA_24	1551	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_25	dnaN	100	100	dnaN_77	hemD	100	100	hemD_27	hisD	100	100	hisD_22	purE	100	100	purE_18	sucA	100	100	sucA_131	thrA	100	100	thrA_24	4	b	-	Salmonella enterica subspecies salamae (subspecies II)	II 4:b:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNXZY010000001.1 Salmonella enterica strain PNUSAS357881 SAMN35841312-rid18532463.denovo.01, whole genome shotgun sequence	499473..499910	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNXZY010000033.1 Salmonella enterica strain PNUSAS357881 SAMN35841312-rid18532463.guided.17, whole genome shotgun sequence	40627..41064	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032768995.1_PDT001786804.1_genomic.fna	Salmonella_enterica	0.5213	529.791 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNYAA010000006.1 Salmonella enterica strain PNUSAS357902 SAMN35840503-rid18532313.denovo.06, whole genome shotgun sequence	295360..295797	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNYAA010000024.1 Salmonella enterica strain PNUSAS357902 SAMN35840503-rid18532313.guided.15, whole genome shotgun sequence	16407..16844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYAA010000002.1	131917..132786	98.966	870	0						
GCA_032769015.1_PDT001786817.1_genomic.fna	Salmonella_enterica	0.5208	685.91 KB	3	aroC_13,dnaN_12,hemD_63,hisD_16,purE_13,sucA_16,thrA_4	437	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_63	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNXZZ010000001.1 Salmonella enterica strain PNUSAS357886 SAMN35841311-rid18532443.denovo.01, whole genome shotgun sequence	502198..502635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNXZZ010000020.1 Salmonella enterica strain PNUSAS357886 SAMN35841311-rid18532443.guided.16, whole genome shotgun sequence	1521..1958	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNXZZ010000003.1	544663..545532	99.54	870	0						
GCA_032769035.1_PDT001786799.1_genomic.fna	Salmonella_enterica	0.5225	495.642 KB	4	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_19,thrA_12	582	8:z4,z23:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	z4,z23	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Chailey		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYAC010000002.1 Salmonella enterica strain PNUSAS357911 SAMN35840506-rid18532263.denovo.02, whole genome shotgun sequence	487972..488409	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYAC010000021.1 Salmonella enterica strain PNUSAS357911 SAMN35840506-rid18532263.guided.18, whole genome shotgun sequence	5904..6341	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYAC010000008.1	140164..141032	99.425	870	0						
GCA_032769055.1_PDT001786797.1_genomic.fna	Salmonella_enterica	0.5201	221.693 KB	8	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYAD010000001.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322870 SAMN35842926-rid18532243.denovo.01, whole genome shotgun sequence	486107..486544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYAD010000049.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322870 SAMN35842926-rid18532243.guided.33, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNYAD010000011.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322870 SAMN35842926-rid18532243.denovo.11, whole genome shotgun sequence	17986..18408	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNYAD010000050.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322870 SAMN35842926-rid18532243.guided.35, whole genome shotgun sequence	16565..16987	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYAD010000003.1	203006..203875	99.195	870	0						
GCA_032769095.1_PDT001786798.1_genomic.fna	Salmonella_enterica	0.5212	203.759 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYAB010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322869 SAMN35842925-rid18532253.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYAB010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322869 SAMN35842925-rid18532253.denovo.42, whole genome shotgun sequence	8009..8800	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYAB010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322869 SAMN35842925-rid18532253.denovo.42, whole genome shotgun sequence	8009..8800	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNYAB010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322869 SAMN35842925-rid18532253.guided.38, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYAB010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322869 SAMN35842925-rid18532253.guided.43, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYAB010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322869 SAMN35842925-rid18532253.guided.43, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNYAB010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322869 SAMN35842925-rid18532253.denovo.42, whole genome shotgun sequence	6665..7504	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYAB010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322869 SAMN35842925-rid18532253.guided.43, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYAB010000034.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322869 SAMN35842925-rid18532253.denovo.36, whole genome shotgun sequence	917..2116	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYAB010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322869 SAMN35842925-rid18532253.guided.35, whole genome shotgun sequence	941..2140	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYAB010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322869 SAMN35842925-rid18532253.denovo.27, whole genome shotgun sequence	32791..33350																																																						avrA	ABNYAB010000002.1	149861..150730	99.655	870	0						
GCA_032769135.1_PDT001786795.1_genomic.fna	Salmonella_enterica	0.5212	275.098 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYAG010000001.1 Salmonella enterica strain PNUSAS357908 SAMN35840478-rid18532223.denovo.01, whole genome shotgun sequence	337830..338267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYAG010000040.1 Salmonella enterica strain PNUSAS357908 SAMN35840478-rid18532223.guided.14, whole genome shotgun sequence	34116..34553	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYAG010000004.1	171945..172813	99.77	870	0						
GCA_032769155.1_PDT001786790.1_genomic.fna	Salmonella_enterica	0.5205	204.332 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYAH010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322868 SAMN35842924-rid18532173.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYAH010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322868 SAMN35842924-rid18532173.denovo.49, whole genome shotgun sequence	8092..8883	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYAH010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322868 SAMN35842924-rid18532173.denovo.49, whole genome shotgun sequence	8092..8883	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNYAH010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322868 SAMN35842924-rid18532173.guided.50, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYAH010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322868 SAMN35842924-rid18532173.guided.50, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNYAH010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322868 SAMN35842924-rid18532173.guided.51, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNYAH010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322868 SAMN35842924-rid18532173.denovo.49, whole genome shotgun sequence	6748..7587	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYAH010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322868 SAMN35842924-rid18532173.guided.50, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYAH010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322868 SAMN35842924-rid18532173.denovo.39, whole genome shotgun sequence	926..2125	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYAH010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322868 SAMN35842924-rid18532173.guided.38, whole genome shotgun sequence	957..2156	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYAH010000025.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322868 SAMN35842924-rid18532173.denovo.25, whole genome shotgun sequence	37011..37570	enterobacteriales	IncX1	98.93	374 / 374	ABNYAH010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322868 SAMN35842924-rid18532173.denovo.34, whole genome shotgun sequence	16776..17149																																																avrA	ABNYAH010000003.1	124400..125269	99.655	870	0						
GCA_032769175.1_PDT001786789.1_genomic.fna	Salmonella_enterica	0.5213	194.508 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYAI010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322863 SAMN35842919-rid18532163.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYAI010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322863 SAMN35842919-rid18532163.denovo.39, whole genome shotgun sequence	12858..13649	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYAI010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322863 SAMN35842919-rid18532163.denovo.39, whole genome shotgun sequence	12858..13649	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNYAI010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322863 SAMN35842919-rid18532163.guided.36, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYAI010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322863 SAMN35842919-rid18532163.guided.43, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYAI010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322863 SAMN35842919-rid18532163.guided.43, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNYAI010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322863 SAMN35842919-rid18532163.denovo.39, whole genome shotgun sequence	11514..12353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYAI010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322863 SAMN35842919-rid18532163.guided.43, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYAI010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322863 SAMN35842919-rid18532163.denovo.34, whole genome shotgun sequence	938..2137	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYAI010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322863 SAMN35842919-rid18532163.guided.35, whole genome shotgun sequence	972..2171	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYAI010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322863 SAMN35842919-rid18532163.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABNYAI010000002.1	94085..94954	99.655	870	0						
GCA_032769195.1_PDT001786785.1_genomic.fna	Salmonella_enterica	0.5206	355.256 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYAM010000009.1 Salmonella enterica strain PNUSAS357912 SAMN35840475-rid18532123.denovo.09, whole genome shotgun sequence	170368..170805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYAM010000029.1 Salmonella enterica strain PNUSAS357912 SAMN35840475-rid18532123.guided.14, whole genome shotgun sequence	37687..38124	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNYAM010000019.1 Salmonella enterica strain PNUSAS357912 SAMN35840475-rid18532123.denovo.23, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AP000342	tet(B)	100	1206/1206	ABNYAM010000032.1 Salmonella enterica strain PNUSAS357912 SAMN35840475-rid18532123.guided.24, whole genome shotgun sequence	4199..5404	Doxycycline, Tetracycline, Minocycline	AP000342																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYAM010000005.1	179904..180773	99.425	870	0						
GCA_032769215.1_PDT001786788.1_genomic.fna	Salmonella_enterica	0.5213	480.935 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYAJ010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322860 SAMN35842916-rid18532153.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYAJ010000026.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322860 SAMN35842916-rid18532153.guided.13, whole genome shotgun sequence	21881..22318	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYAJ010000017.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322860 SAMN35842916-rid18532153.denovo.19, whole genome shotgun sequence	6812..7454	enterobacteriales	IncFII(S)	100	262 / 262	ABNYAJ010000019.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322860 SAMN35842916-rid18532153.denovo.22, whole genome shotgun sequence	3402..3663																																																avrA	ABNYAJ010000002.1	553648..554517	99.54	870	0						
GCA_032769235.1_PDT001786784.1_genomic.fna	Salmonella_enterica	0.5211	284.182 KB	7	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNYAK010000003.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322866 SAMN35842922-rid18520493.denovo.03, whole genome shotgun sequence	135585..136022	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYAK010000007.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322866 SAMN35842922-rid18520493.denovo.07, whole genome shotgun sequence	277400..278236	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNYAK010000007.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322866 SAMN35842922-rid18520493.denovo.07, whole genome shotgun sequence	278454..279267	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	V00359	aph(3'')-Ib	100	804/804	ABNYAK010000007.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322866 SAMN35842922-rid18520493.denovo.07, whole genome shotgun sequence	276597..277400	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNYAK010000038.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322866 SAMN35842922-rid18520493.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYAK010000040.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322866 SAMN35842922-rid18520493.guided.31, whole genome shotgun sequence	7939..8775	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNYAK010000040.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322866 SAMN35842922-rid18520493.guided.31, whole genome shotgun sequence	8993..9806	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	V00359	aph(3'')-Ib	100	804/804	ABNYAK010000040.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322866 SAMN35842922-rid18520493.guided.31, whole genome shotgun sequence	7136..7939	Streptomycin	AF321551	sul2	99.88	816/816	ABNYAK010000005.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322866 SAMN35842922-rid18520493.denovo.05, whole genome shotgun sequence	297783..298598	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNYAK010000037.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322866 SAMN35842922-rid18520493.guided.27, whole genome shotgun sequence	12299..13114	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNYAK010000028.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322866 SAMN35842922-rid18520493.denovo.33, whole genome shotgun sequence	1352..2557	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYAK010000041.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322866 SAMN35842922-rid18520493.guided.34, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYAK010000017.1	94016..94884	99.655	869	0						
GCA_032769255.1_PDT001786783.1_genomic.fna	Salmonella_enterica	0.5217	260.074 KB	6	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYAL010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322837 SAMN35842590-rid18525083.denovo.01, whole genome shotgun sequence	691944..692381	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYAL010000047.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322837 SAMN35842590-rid18525083.guided.33, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNYAL010000035.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322837 SAMN35842590-rid18525083.denovo.38, whole genome shotgun sequence	557..687																																																						avrA	ABNYAL010000013.1	131101..131970	99.54	870	0						
GCA_032769275.1_PDT001786781.1_genomic.fna	Salmonella_enterica	0.5217	425.084 KB	4	aroC_437,dnaN_41,hemD_109,hisD_279,purE_2,sucA_100,thrA_95	2222	13:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_437	dnaN	100	100	dnaN_41	hemD	100	100	hemD_109	hisD	100	100	hisD_279	purE	100	100	purE_2	sucA	100	100	sucA_100	thrA	100	100	thrA_95	13	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Telelkebir		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYAN010000001.1 Salmonella enterica strain PNUSAS357910 SAMN35840477-rid18523443.denovo.01, whole genome shotgun sequence	308392..308829	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYAN010000028.1 Salmonella enterica strain PNUSAS357910 SAMN35840477-rid18523443.guided.14, whole genome shotgun sequence	34039..34476	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYAN010000008.1	140427..141296	99.08	870	0						
GCA_032769295.1_PDT001786780.1_genomic.fna	Salmonella_enterica	0.5211	489.786 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87G	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYAO010000001.1 Salmonella enterica strain PNUSAS357903 SAMN35840504-rid18531193.denovo.01, whole genome shotgun sequence	810561..810998	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYAO010000026.1 Salmonella enterica strain PNUSAS357903 SAMN35840504-rid18531193.guided.17, whole genome shotgun sequence	410..847	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYAO010000007.1 Salmonella enterica strain PNUSAS357903 SAMN35840504-rid18531193.denovo.07, whole genome shotgun sequence	48321..48963	enterobacteriales	IncFII(S)	100	262 / 262	ABNYAO010000007.1 Salmonella enterica strain PNUSAS357903 SAMN35840504-rid18531193.denovo.07, whole genome shotgun sequence	4068..4329																																																avrA	ABNYAO010000002.1	140720..141589	99.54	870	0						
GCA_032769315.1_PDT001786773.1_genomic.fna	Salmonella_enterica	0.5213	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYAR010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYAR010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.denovo.36, whole genome shotgun sequence	12863..13654	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYAR010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.denovo.36, whole genome shotgun sequence	12863..13654	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYAR010000047.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.denovo.52, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYAR010000047.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.denovo.52, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNYAR010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.guided.33, whole genome shotgun sequence	8784..9221	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYAR010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.guided.40, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYAR010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.guided.40, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYAR010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.guided.53, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYAR010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.guided.53, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNYAR010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.denovo.36, whole genome shotgun sequence	11519..12358	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYAR010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.guided.40, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYAR010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.denovo.32, whole genome shotgun sequence	928..2127	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYAR010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.guided.54, whole genome shotgun sequence	959..2158	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNYAR010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.denovo.42, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNYAR010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.guided.48, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYAR010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322864 SAMN35842920-rid18525073.denovo.15, whole genome shotgun sequence	63561..64120																																																						avrA	ABNYAR010000002.1	149587..150456	99.655	870	0						
GCA_032769335.1_PDT001786774.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYAP010000001.1 Salmonella enterica strain PNUSAS357906 SAMN35840507-rid18520483.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYAP010000021.1 Salmonella enterica strain PNUSAS357906 SAMN35840507-rid18520483.guided.10, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYAP010000011.1 Salmonella enterica strain PNUSAS357906 SAMN35840507-rid18520483.denovo.13, whole genome shotgun sequence	40542..41184	enterobacteriales	IncFII(S)	100	262 / 262	ABNYAP010000015.1 Salmonella enterica strain PNUSAS357906 SAMN35840507-rid18520483.denovo.18, whole genome shotgun sequence	3415..3676																																																avrA	ABNYAP010000002.1	553636..554505	99.54	870	0						
GCA_032769355.1_PDT001786771.1_genomic.fna	Salmonella_enterica	0.519	148.129 KB	9	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYAS010000013.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322862 SAMN35842918-rid18523433.denovo.13, whole genome shotgun sequence	86588..87025	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYAS010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322862 SAMN35842918-rid18523433.denovo.32, whole genome shotgun sequence	33267..34103	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYAS010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322862 SAMN35842918-rid18523433.denovo.32, whole genome shotgun sequence	34103..34906	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNYAS010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322862 SAMN35842918-rid18523433.guided.42, whole genome shotgun sequence	16053..16490	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYAS010000078.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322862 SAMN35842918-rid18523433.guided.56, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYAS010000078.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322862 SAMN35842918-rid18523433.guided.56, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNYAS010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322862 SAMN35842918-rid18523433.denovo.54, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYAS010000077.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322862 SAMN35842918-rid18523433.guided.53, whole genome shotgun sequence	4114..5319	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNYAS010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322862 SAMN35842918-rid18523433.denovo.60, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNYAS010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322862 SAMN35842918-rid18523433.denovo.32, whole genome shotgun sequence	32383..32644		enterobacteriales	IncFII	96.95	262 / 261	ABNYAS010000078.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322862 SAMN35842918-rid18523433.guided.56, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNYAS010000038.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322862 SAMN35842918-rid18523433.denovo.38, whole genome shotgun sequence	17230..17371		enterobacteriales	IncX1	100	373 / 373	ABNYAS010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322862 SAMN35842918-rid18523433.denovo.50, whole genome shotgun sequence	2153..2525																											avrA	ABNYAS010000027.1	39484..40353	99.655	870	0						
GCA_032769375.1_PDT001786770.1_genomic.fna	Salmonella_enterica	0.519	254.837 KB	7	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYAT010000013.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322859 SAMN35842915-rid18532113.denovo.13, whole genome shotgun sequence	83706..84143	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYAT010000028.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322859 SAMN35842915-rid18532113.denovo.28, whole genome shotgun sequence	811..1647	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYAT010000028.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322859 SAMN35842915-rid18532113.denovo.28, whole genome shotgun sequence	8..811	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNYAT010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322859 SAMN35842915-rid18532113.guided.36, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYAT010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322859 SAMN35842915-rid18532113.guided.49, whole genome shotgun sequence	832..1668	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYAT010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322859 SAMN35842915-rid18532113.guided.49, whole genome shotgun sequence	29..832	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNYAT010000038.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322859 SAMN35842915-rid18532113.denovo.41, whole genome shotgun sequence	1430..2635	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYAT010000059.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322859 SAMN35842915-rid18532113.guided.42, whole genome shotgun sequence	4117..5322	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNYAT010000024.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322859 SAMN35842915-rid18532113.denovo.24, whole genome shotgun sequence	1155..1836	enterobacteriales	IncFII	96.95	262 / 261	ABNYAT010000039.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322859 SAMN35842915-rid18532113.denovo.43, whole genome shotgun sequence	540..801		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNYAT010000028.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322859 SAMN35842915-rid18532113.denovo.28, whole genome shotgun sequence	12253..12394		enterobacteriales	IncX1	100	373 / 373	ABNYAT010000037.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322859 SAMN35842915-rid18532113.denovo.40, whole genome shotgun sequence	2153..2525																																		avrA	ABNYAT010000001.1	39610..40479	99.655	870	0						
GCA_032769415.1_PDT001786768.1_genomic.fna	Salmonella_enterica	0.5215	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYAV010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYAV010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.denovo.33, whole genome shotgun sequence	12848..13639	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYAV010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.denovo.33, whole genome shotgun sequence	12848..13639	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYAV010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.denovo.47, whole genome shotgun sequence	1052..2077	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYAV010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.denovo.47, whole genome shotgun sequence	47..823	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNYAV010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.guided.34, whole genome shotgun sequence	11914..12351	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYAV010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.guided.42, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYAV010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.guided.42, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYAV010000057.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.guided.46, whole genome shotgun sequence	1093..2118	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYAV010000057.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.guided.46, whole genome shotgun sequence	88..864	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNYAV010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.denovo.48, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNYAV010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.guided.49, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNYAV010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.denovo.43, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNYAV010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.guided.51, whole genome shotgun sequence	136..1349	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNYAV010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.denovo.33, whole genome shotgun sequence	11504..12343	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYAV010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.guided.42, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYAV010000016.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.denovo.16, whole genome shotgun sequence	911..2110	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYAV010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.guided.32, whole genome shotgun sequence	850..2049	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYAV010000029.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322861 SAMN35842917-rid18526663.denovo.30, whole genome shotgun sequence	9109..9668																																																						avrA	ABNYAV010000002.1	149719..150588	99.655	870	0						
GCA_032769495.1_PDT001786753.1_genomic.fna	Salmonella_enterica	0.5221	44.718 KB	33	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYBB010000017.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309726 SAMN35842441-rid18525053.denovo.017, whole genome shotgun sequence	12481..12918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYBB010000193.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309726 SAMN35842441-rid18525053.guided.038, whole genome shotgun sequence	25867..26304	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNYBB010000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309726 SAMN35842441-rid18525053.denovo.010, whole genome shotgun sequence	36206..37021	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNYBB010000196.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309726 SAMN35842441-rid18525053.guided.124, whole genome shotgun sequence	1581..2396	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNYBB010000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309726 SAMN35842441-rid18525053.denovo.010, whole genome shotgun sequence	32830..34029	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYBB010000196.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309726 SAMN35842441-rid18525053.guided.124, whole genome shotgun sequence	4573..5772	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNYBB010000139.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309726 SAMN35842441-rid18525053.denovo.143, whole genome shotgun sequence	371..501																																																						avrA	ABNYBB010000033.1	43762..44631	99.885	870	0						
GCA_032769535.1_PDT001786766.1_genomic.fna	Salmonella_enterica	0.522	635.629 KB	2	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYAX010000001.1 Salmonella enterica strain PNUSAS357907 SAMN35840509-rid18532103.denovo.01, whole genome shotgun sequence	679061..679498	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYAX010000020.1 Salmonella enterica strain PNUSAS357907 SAMN35840509-rid18532103.guided.14, whole genome shotgun sequence	34226..34663	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYAX010000002.1	540896..541762	98.966	870	0						
GCA_032769555.1_PDT001786748.1_genomic.fna	Salmonella_enterica	0.5229	43.148 KB	36	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		1	ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYBA010000057.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309728 SAMN35842461-rid18523403.denovo.058, whole genome shotgun sequence	15441..15878	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNYBA010000096.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309728 SAMN35842461-rid18523403.denovo.098, whole genome shotgun sequence	12506..13408	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNYBA010000096.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309728 SAMN35842461-rid18523403.denovo.098, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNYBA010000202.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309728 SAMN35842461-rid18523403.guided.065, whole genome shotgun sequence	14813..15250	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNYBA010000206.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309728 SAMN35842461-rid18523403.guided.144, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNYBA010000207.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309728 SAMN35842461-rid18523403.guided.161, whole genome shotgun sequence	2402..3193	Spectinomycin, Streptomycin	JQ414041	sul2	100	816/816	ABNYBA010000019.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309728 SAMN35842461-rid18523403.denovo.019, whole genome shotgun sequence	5050..5865	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNYBA010000096.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309728 SAMN35842461-rid18523403.denovo.098, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul2	100	816/816	ABNYBA010000201.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309728 SAMN35842461-rid18523403.guided.027, whole genome shotgun sequence	43384..44199	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNYBA010000205.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309728 SAMN35842461-rid18523403.guided.142, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABNYBA010000019.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309728 SAMN35842461-rid18523403.denovo.019, whole genome shotgun sequence	1674..2873	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNYBA010000165.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309728 SAMN35842461-rid18523403.denovo.173, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABNYBA010000201.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309728 SAMN35842461-rid18523403.guided.027, whole genome shotgun sequence	46376..47575	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNYBA010000208.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309728 SAMN35842461-rid18523403.guided.170, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	ColpVC	98.96	193 / 193	ABNYBA010000164.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309728 SAMN35842461-rid18523403.denovo.172, whole genome shotgun sequence	805..997																																																						avrA	ABNYBA010000002.1	81753..82622	99.885	870	0						
GCA_032769595.1_PDT001786747.1_genomic.fna	Salmonella_enterica	0.5214	80.045 KB	18	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYBC010000044.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309725 SAMN35842438-rid18519103.denovo.045, whole genome shotgun sequence	17192..17629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYBC010000136.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309725 SAMN35842438-rid18519103.guided.044, whole genome shotgun sequence	15618..16055	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	262 / 262	ABNYBC010000092.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309725 SAMN35842438-rid18519103.denovo.095, whole genome shotgun sequence	3258..3519	enterobacteriales	IncX1	98.93	374 / 374	ABNYBC010000074.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309725 SAMN35842438-rid18519103.denovo.077, whole genome shotgun sequence	7756..8129																																																avrA	ABNYBC010000038.1	43667..44536	99.54	870	0						
GCA_032769615.1_PDT001786742.1_genomic.fna	Salmonella_enterica	0.5207	190.477 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYBE010000001.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12322817 SAMN35842557-rid18517463.denovo.01, whole genome shotgun sequence	477373..477810	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYBE010000039.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12322817 SAMN35842557-rid18517463.guided.29, whole genome shotgun sequence	13016..13453	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYBE010000007.1	140131..141000	99.195	870	0						
GCA_032769635.1_PDT001786746.1_genomic.fna	Salmonella_enterica	0.5213	244.523 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYBD010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322834 SAMN35842575-rid18521853.denovo.01, whole genome shotgun sequence	478977..479414	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYBD010000040.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322834 SAMN35842575-rid18521853.guided.25, whole genome shotgun sequence	29740..30177	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYBD010000005.1	175109..175978	99.54	870	0						
GCA_032769645.1_PDT001786741.1_genomic.fna	Salmonella_enterica	0.5213	358.503 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYBG010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322831 SAMN35842572-rid18523393.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYBG010000028.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322831 SAMN35842572-rid18523393.guided.18, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYBG010000008.1	176422..177291	99.54	870	0						
GCA_032769695.1_PDT001786736.1_genomic.fna	Salmonella_enterica	0.5236	65.177 KB	24	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNYBH010000024.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32309731 SAMN35842464-rid18521843.denovo.024, whole genome shotgun sequence	12510..12947	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNYBH010000142.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32309731 SAMN35842464-rid18521843.guided.058, whole genome shotgun sequence	14210..14647	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNYBH010000117.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32309731 SAMN35842464-rid18521843.denovo.120, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABNYBH010000115.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32309731 SAMN35842464-rid18521843.denovo.118, whole genome shotgun sequence	3175..3285																																																avrA	ABNYBH010000035.1	43657..44526	99.425	870	0						
GCA_032769715.1_PDT001786734.1_genomic.fna	Salmonella_enterica	0.5224	272.301 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYBI010000001.1 Salmonella enterica subsp. enterica serovar Berta strain FSIS12322836 SAMN35842589-rid18517453.denovo.01, whole genome shotgun sequence	293540..293977	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYBI010000045.1 Salmonella enterica subsp. enterica serovar Berta strain FSIS12322836 SAMN35842589-rid18517453.guided.31, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYBI010000006.1	94166..95034	99.425	870	0						
GCA_032769735.1_PDT001786735.1_genomic.fna	Salmonella_enterica	0.5192	106.631 KB	17	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNYBJ010000005.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322838 SAMN35842591-rid18531153.denovo.05, whole genome shotgun sequence	82911..83348	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNYBJ010000092.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322838 SAMN35842591-rid18531153.guided.49, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNYBJ010000019.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322838 SAMN35842591-rid18531153.denovo.19, whole genome shotgun sequence	75855..76277	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNYBJ010000093.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322838 SAMN35842591-rid18531153.guided.63, whole genome shotgun sequence	15713..16135	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	ABNYBJ010000075.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322838 SAMN35842591-rid18531153.denovo.80, whole genome shotgun sequence	2158..3363	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYBJ010000095.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322838 SAMN35842591-rid18531153.guided.78, whole genome shotgun sequence	2199..3404	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYBJ010000004.1	85770..86639	99.655	870	0						
GCA_032769755.1_PDT001786733.1_genomic.fna	Salmonella_enterica	0.5174	126.568 KB	14	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	2	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aph(6)-Id	100	837/837	ABNYBK010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322835 SAMN35842576-rid18526643.denovo.045, whole genome shotgun sequence	2315..3151	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYBK010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322835 SAMN35842576-rid18526643.denovo.045, whole genome shotgun sequence	1513..2315	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYBK010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322835 SAMN35842576-rid18526643.denovo.045, whole genome shotgun sequence	1512..2315	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYBK010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322835 SAMN35842576-rid18526643.denovo.045, whole genome shotgun sequence	1512..2315	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYBK010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322835 SAMN35842576-rid18526643.denovo.045, whole genome shotgun sequence	1512..2315	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNYBK010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322835 SAMN35842576-rid18526643.guided.058, whole genome shotgun sequence	2356..3192	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYBK010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322835 SAMN35842576-rid18526643.guided.058, whole genome shotgun sequence	1554..2356	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYBK010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322835 SAMN35842576-rid18526643.guided.058, whole genome shotgun sequence	1553..2356	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYBK010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322835 SAMN35842576-rid18526643.guided.058, whole genome shotgun sequence	1553..2356	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYBK010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322835 SAMN35842576-rid18526643.guided.058, whole genome shotgun sequence	1553..2356	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNYBK010000036.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322835 SAMN35842576-rid18526643.denovo.036, whole genome shotgun sequence	28959..29285	enterobacteriales	IncHI2A	99.52	630 / 630	ABNYBK010000036.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322835 SAMN35842576-rid18526643.denovo.036, whole genome shotgun sequence	47269..47898		enterobacteriales	IncX1	100	373 / 373	ABNYBK010000078.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322835 SAMN35842576-rid18526643.denovo.081, whole genome shotgun sequence	2218..2590																																									avrA	ABNYBK010000037.1	39489..40358	99.655	870	0						
GCA_032769775.1_PDT001786732.1_genomic.fna	Salmonella_enterica	0.5174	110.533 KB	16	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	4	IncFII,IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYBL010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322833 SAMN35842574-rid18519093.denovo.012, whole genome shotgun sequence	84716..85153	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYBL010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322833 SAMN35842574-rid18519093.denovo.047, whole genome shotgun sequence	2754..3590	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYBL010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322833 SAMN35842574-rid18519093.denovo.047, whole genome shotgun sequence	1952..2754	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYBL010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322833 SAMN35842574-rid18519093.denovo.047, whole genome shotgun sequence	1951..2754	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYBL010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322833 SAMN35842574-rid18519093.denovo.047, whole genome shotgun sequence	1951..2754	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYBL010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322833 SAMN35842574-rid18519093.denovo.047, whole genome shotgun sequence	1951..2754	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNYBL010000140.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322833 SAMN35842574-rid18519093.guided.035, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYBL010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322833 SAMN35842574-rid18519093.guided.046, whole genome shotgun sequence	2795..3631	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYBL010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322833 SAMN35842574-rid18519093.guided.046, whole genome shotgun sequence	1993..2795	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYBL010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322833 SAMN35842574-rid18519093.guided.046, whole genome shotgun sequence	1992..2795	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYBL010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322833 SAMN35842574-rid18519093.guided.046, whole genome shotgun sequence	1992..2795	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYBL010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322833 SAMN35842574-rid18519093.guided.046, whole genome shotgun sequence	1992..2795	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII	100	261 / 261	ABNYBL010000040.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322833 SAMN35842574-rid18519093.denovo.041, whole genome shotgun sequence	5944..6204	enterobacteriales	IncHI2	100	291 / 327	ABNYBL010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322833 SAMN35842574-rid18519093.denovo.077, whole genome shotgun sequence	1..291		enterobacteriales	IncHI2A	99.52	630 / 630	ABNYBL010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322833 SAMN35842574-rid18519093.denovo.060, whole genome shotgun sequence	6807..7436		enterobacteriales	IncX1	100	373 / 373	ABNYBL010000075.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322833 SAMN35842574-rid18519093.denovo.079, whole genome shotgun sequence	2153..2525																																		avrA	ABNYBL010000039.1	39484..40353	99.655	870	0						
GCA_032769815.1_PDT001786730.1_genomic.fna	Salmonella_enterica	0.5219	110.631 KB	14	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYBM010000008.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322830 SAMN35842556-rid18529753.denovo.08, whole genome shotgun sequence	83575..84012	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYBM010000060.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322830 SAMN35842556-rid18529753.denovo.64, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYBM010000060.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322830 SAMN35842556-rid18529753.denovo.64, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYBM010000060.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322830 SAMN35842556-rid18529753.denovo.64, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYBM010000060.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322830 SAMN35842556-rid18529753.denovo.64, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYBM010000060.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322830 SAMN35842556-rid18529753.denovo.64, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNYBM010000076.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322830 SAMN35842556-rid18529753.guided.46, whole genome shotgun sequence	2314..2751	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYBM010000079.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322830 SAMN35842556-rid18529753.guided.63, whole genome shotgun sequence	1525..2361	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYBM010000079.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322830 SAMN35842556-rid18529753.guided.63, whole genome shotgun sequence	723..1525	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYBM010000079.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322830 SAMN35842556-rid18529753.guided.63, whole genome shotgun sequence	722..1525	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYBM010000079.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322830 SAMN35842556-rid18529753.guided.63, whole genome shotgun sequence	722..1525	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYBM010000079.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322830 SAMN35842556-rid18529753.guided.63, whole genome shotgun sequence	722..1525	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNYBM010000062.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322830 SAMN35842556-rid18529753.denovo.67, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYBM010000080.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322830 SAMN35842556-rid18529753.guided.66, whole genome shotgun sequence	941..2140	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.91	132 / 131	ABNYBM010000068.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322830 SAMN35842556-rid18529753.denovo.73, whole genome shotgun sequence	1188..1318																																																						avrA	ABNYBM010000009.1	39546..40415	99.655	870	0						
GCA_032769835.1_PDT001786729.1_genomic.fna	Salmonella_enterica	0.5203	155 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	12	aac(6')-Iaa,aph(3')-Ia,aadA2,aac(6')-Iaa,aph(3')-Ia,aadA2,blaTEM-1B,blaCARB-2,blaTEM-1B,blaCARB-2,qnrB19,qnrB19,sul1,sul3,sul3,sul1,tet(A),tet(M),tet(A),tet(M),dfrA12,dfrA12,bleO,bleO	0		3	Col(pHAD28),Col(pHAD28),IncFIB(S),IncFII	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYBP010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.denovo.001, whole genome shotgun sequence	162386..162823	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNYBP010000058.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.denovo.062, whole genome shotgun sequence	555..1370	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	EU722351	aadA2	99.87	792/792	ABNYBP010000063.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.denovo.069, whole genome shotgun sequence	1724..2515	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	100	438/438	ABNYBP010000089.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.guided.028, whole genome shotgun sequence	41907..42344	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNYBP010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.guided.065, whole genome shotgun sequence	1861..2676	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	EU722351	aadA2	99.87	792/792	ABNYBP010000099.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.guided.083, whole genome shotgun sequence	944..1735	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABNYBP010000048.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.denovo.050, whole genome shotgun sequence	17275..18135	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCARB-2	100	867/867	ABNYBP010000064.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.denovo.070, whole genome shotgun sequence	2469..3335	Ampicillin, Amoxicillin, Piperacillin	M69058	blaTEM-1B	100	861/861	ABNYBP010000091.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.guided.053, whole genome shotgun sequence	73..933	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCARB-2	100	867/867	ABNYBP010000101.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.guided.088, whole genome shotgun sequence	100..966	Ampicillin, Amoxicillin, Piperacillin	M69058	qnrB19	100	645/645	ABNYBP010000067.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.denovo.076, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNYBP010000097.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.guided.075, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul1	100	840/840	ABNYBP010000064.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.denovo.070, whole genome shotgun sequence	1072..1911	Sulfamethoxazole	U12338	sul3	100	792/792	ABNYBP010000065.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.denovo.072, whole genome shotgun sequence	267..1058	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABNYBP010000095.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.guided.071, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	sul1	100	840/840	ABNYBP010000098.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.guided.080, whole genome shotgun sequence	391..1230	Sulfamethoxazole	U12338	tet(A)	99.92	1200/1200	ABNYBP010000062.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.denovo.067, whole genome shotgun sequence	2385..3584	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	ABNYBP010000066.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.denovo.074, whole genome shotgun sequence	86..2005	Doxycycline, Tetracycline, Minocycline	X04388	tet(A)	99.92	1200/1200	ABNYBP010000094.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.guided.068, whole genome shotgun sequence	526..1725	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	ABNYBP010000096.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.guided.073, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABNYBP010000063.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.denovo.069, whole genome shotgun sequence	2923..3420	Trimethoprim	AM040708	dfrA12	100	498/498	ABNYBP010000099.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.guided.083, whole genome shotgun sequence	39..536	Trimethoprim	AM040708	bleO	100	392/399	ABNYBP010000063.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.denovo.069, whole genome shotgun sequence	136..527	Bleomycin	AF051917	bleO	100	392/399	ABNYBP010000100.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.guided.084, whole genome shotgun sequence	177..568	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	100	131 / 131	ABNYBP010000067.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.denovo.076, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNYBP010000097.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.guided.075, whole genome shotgun sequence	2145..2275		enterobacteriales	IncFIB(S)	100	643 / 643	ABNYBP010000051.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.denovo.054, whole genome shotgun sequence	6826..7468		enterobacteriales	IncFII	99.62	261 / 261	ABNYBP010000052.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322829 SAMN35842555-rid18520433.denovo.055, whole genome shotgun sequence	11871..12131																																		avrA	ABNYBP010000003.1	123443..124312	99.885	870	0						
GCA_032769895.1_PDT001786726.1_genomic.fna	Salmonella_enterica	0.5169	100.307 KB	16	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	2	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYBT010000017.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322828 SAMN35842553-rid18521833.denovo.017, whole genome shotgun sequence	58455..58892	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNYBT010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322828 SAMN35842553-rid18521833.denovo.102, whole genome shotgun sequence	443..1245	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYBT010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322828 SAMN35842553-rid18521833.denovo.102, whole genome shotgun sequence	443..1246	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYBT010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322828 SAMN35842553-rid18521833.denovo.102, whole genome shotgun sequence	443..1246	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYBT010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322828 SAMN35842553-rid18521833.denovo.102, whole genome shotgun sequence	443..1246	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNYBT010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322828 SAMN35842553-rid18521833.guided.029, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABNYBT010000134.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322828 SAMN35842553-rid18521833.guided.101, whole genome shotgun sequence	1992..2794	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYBT010000134.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322828 SAMN35842553-rid18521833.guided.101, whole genome shotgun sequence	1991..2794	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYBT010000134.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322828 SAMN35842553-rid18521833.guided.101, whole genome shotgun sequence	1991..2794	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYBT010000134.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322828 SAMN35842553-rid18521833.guided.101, whole genome shotgun sequence	1991..2794	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNYBT010000076.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322828 SAMN35842553-rid18521833.denovo.079, whole genome shotgun sequence	1921..2247	enterobacteriales	IncHI2A	99.52	630 / 630	ABNYBT010000059.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322828 SAMN35842553-rid18521833.denovo.062, whole genome shotgun sequence	2816..3445		enterobacteriales	IncX1	100	373 / 373	ABNYBT010000087.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322828 SAMN35842553-rid18521833.denovo.090, whole genome shotgun sequence	2153..2525																																									avrA	ABNYBT010000035.1	39484..40353	99.655	870	0						
GCA_032770035.1_PDT001786719.1_genomic.fna	Salmonella_enterica	0.5218	88.583 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYBY010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309729 SAMN35842462-rid18528243.denovo.001, whole genome shotgun sequence	232905..233342	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYBY010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309729 SAMN35842462-rid18528243.denovo.051, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYBY010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309729 SAMN35842462-rid18528243.denovo.051, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNYBY010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309729 SAMN35842462-rid18528243.guided.033, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYBY010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309729 SAMN35842462-rid18528243.guided.069, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYBY010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309729 SAMN35842462-rid18528243.guided.069, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNYBY010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309729 SAMN35842462-rid18528243.denovo.051, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYBY010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309729 SAMN35842462-rid18528243.guided.069, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYBY010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309729 SAMN35842462-rid18528243.denovo.051, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYBY010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309729 SAMN35842462-rid18528243.guided.069, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYBY010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309729 SAMN35842462-rid18528243.denovo.027, whole genome shotgun sequence	52161..52720																																																						avrA	ABNYBY010000036.1	39534..40403	99.655	870	0						
GCA_032770075.1_PDT001786716.1_genomic.fna	Salmonella_enterica	0.5195	66.003 KB	23	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYCA010000024.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309727 SAMN35842443-rid18521813.denovo.024, whole genome shotgun sequence	12467..12904	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYCA010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309727 SAMN35842443-rid18521813.denovo.060, whole genome shotgun sequence	2754..3590	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYCA010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309727 SAMN35842443-rid18521813.denovo.060, whole genome shotgun sequence	1952..2754	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYCA010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309727 SAMN35842443-rid18521813.denovo.060, whole genome shotgun sequence	1951..2754	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYCA010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309727 SAMN35842443-rid18521813.denovo.060, whole genome shotgun sequence	1951..2754	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYCA010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309727 SAMN35842443-rid18521813.denovo.060, whole genome shotgun sequence	1951..2754	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNYCA010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309727 SAMN35842443-rid18521813.guided.055, whole genome shotgun sequence	15146..15583	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYCA010000197.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309727 SAMN35842443-rid18521813.guided.107, whole genome shotgun sequence	2795..3631	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYCA010000197.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309727 SAMN35842443-rid18521813.guided.107, whole genome shotgun sequence	1993..2795	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYCA010000197.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309727 SAMN35842443-rid18521813.guided.107, whole genome shotgun sequence	1992..2795	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYCA010000197.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309727 SAMN35842443-rid18521813.guided.107, whole genome shotgun sequence	1992..2795	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYCA010000197.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309727 SAMN35842443-rid18521813.guided.107, whole genome shotgun sequence	1992..2795	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNYCA010000077.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309727 SAMN35842443-rid18521813.denovo.079, whole genome shotgun sequence	12764..13090	enterobacteriales	IncHI2A	99.37	630 / 630	ABNYCA010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309727 SAMN35842443-rid18521813.denovo.076, whole genome shotgun sequence	13594..14223		enterobacteriales	IncX1	100	373 / 373	ABNYCA010000127.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309727 SAMN35842443-rid18521813.denovo.131, whole genome shotgun sequence	1848..2220																																									avrA	ABNYCA010000035.1	39484..40353	99.655	870	0						
GCA_032770095.1_PDT001786717.1_genomic.fna	Salmonella_enterica	0.5214	62.567 KB	25	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYCB010000011.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309730 SAMN35842463-rid18520413.denovo.011, whole genome shotgun sequence	75501..75938	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYCB010000183.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309730 SAMN35842463-rid18520413.guided.073, whole genome shotgun sequence	10681..11118	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNYCB010000123.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309730 SAMN35842463-rid18520413.denovo.126, whole genome shotgun sequence	763..893																																																						avrA	ABNYCB010000032.1	39484..40353	99.655	870	0						
GCA_032770135.1_PDT001786715.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYCC010000001.1 Salmonella enterica strain PNUSAS357905 SAMN35840474-rid18531133.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYCC010000019.1 Salmonella enterica strain PNUSAS357905 SAMN35840474-rid18531133.guided.16, whole genome shotgun sequence	2177..2614	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYCC010000012.1 Salmonella enterica strain PNUSAS357905 SAMN35840474-rid18531133.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNYCC010000012.1 Salmonella enterica strain PNUSAS357905 SAMN35840474-rid18531133.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABNYCC010000002.1	553636..554505	99.54	870	0						
GCA_032770155.1_PDT001786707.1_genomic.fna	Salmonella_enterica	0.5212	219.541 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYCF010000001.1 Salmonella enterica strain PNUSAS357909 SAMN35840476-rid18520403.denovo.01, whole genome shotgun sequence	337830..338267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYCF010000043.1 Salmonella enterica strain PNUSAS357909 SAMN35840476-rid18520403.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYCF010000004.1	172533..173401	99.77	870	0						
GCA_032770235.1_PDT001786671.1_genomic.fna	Salmonella_enterica	0.5212	404.992 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYCN010000001.1 Salmonella enterica strain PNUSAS357722 SAMN35830386-rid18523323.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYCN010000028.1 Salmonella enterica strain PNUSAS357722 SAMN35830386-rid18523323.guided.15, whole genome shotgun sequence	19001..19438	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYCN010000015.1 Salmonella enterica strain PNUSAS357722 SAMN35830386-rid18523323.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNYCN010000015.1 Salmonella enterica strain PNUSAS357722 SAMN35830386-rid18523323.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNYCN010000002.1	553077..553946	99.54	870	0						
GCA_032770335.1_PDT001786668.1_genomic.fna	Salmonella_enterica	0.52	196.644 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYCK010000014.1 Salmonella enterica strain 23OH05CG01-S1 SAMN35839458-rid18526573.denovo.14, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYCK010000066.1 Salmonella enterica strain 23OH05CG01-S1 SAMN35839458-rid18526573.guided.33, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	ABNYCK010000043.1 Salmonella enterica strain 23OH05CG01-S1 SAMN35839458-rid18526573.denovo.46, whole genome shotgun sequence	1831..2512	enterobacteriales	IncFII	96.56	262 / 261	ABNYCK010000029.1 Salmonella enterica strain 23OH05CG01-S1 SAMN35839458-rid18526573.denovo.30, whole genome shotgun sequence	36476..36737		enterobacteriales	IncX1	100	373 / 373	ABNYCK010000036.1 Salmonella enterica strain 23OH05CG01-S1 SAMN35839458-rid18526573.denovo.39, whole genome shotgun sequence	2153..2525																																									avrA	ABNYCK010000017.1	102634..103503	99.655	870	0						
GCA_032770375.1_PDT001786664.1_genomic.fna	Salmonella_enterica	0.5184	237.368 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	5	IncFIB(AP001918),IncFII,IncFII(pSE11),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYCR010000014.1 Salmonella enterica strain 23OH05CB12-S1 SAMN35839462-rid18523313.denovo.14, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYCR010000027.1 Salmonella enterica strain 23OH05CB12-S1 SAMN35839462-rid18523313.denovo.30, whole genome shotgun sequence	33995..34831	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNYCR010000027.1 Salmonella enterica strain 23OH05CB12-S1 SAMN35839462-rid18523313.denovo.30, whole genome shotgun sequence	34831..35634	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNYCR010000080.1 Salmonella enterica strain 23OH05CB12-S1 SAMN35839462-rid18523313.guided.27, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYCR010000082.1 Salmonella enterica strain 23OH05CB12-S1 SAMN35839462-rid18523313.guided.59, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNYCR010000082.1 Salmonella enterica strain 23OH05CB12-S1 SAMN35839462-rid18523313.guided.59, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNYCR010000047.1 Salmonella enterica strain 23OH05CB12-S1 SAMN35839462-rid18523313.denovo.50, whole genome shotgun sequence	2090..3295	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYCR010000081.1 Salmonella enterica strain 23OH05CB12-S1 SAMN35839462-rid18523313.guided.54, whole genome shotgun sequence	2829..4034	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNYCR010000034.1 Salmonella enterica strain 23OH05CB12-S1 SAMN35839462-rid18523313.denovo.37, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNYCR010000027.1 Salmonella enterica strain 23OH05CB12-S1 SAMN35839462-rid18523313.denovo.30, whole genome shotgun sequence	33111..33372		enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABNYCR010000041.1 Salmonella enterica strain 23OH05CB12-S1 SAMN35839462-rid18523313.denovo.44, whole genome shotgun sequence	3639..3898		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNYCR010000039.1 Salmonella enterica strain 23OH05CB12-S1 SAMN35839462-rid18523313.denovo.42, whole genome shotgun sequence	5959..6100		enterobacteriales	IncX1	100	373 / 373	ABNYCR010000050.1 Salmonella enterica strain 23OH05CB12-S1 SAMN35839462-rid18523313.denovo.53, whole genome shotgun sequence	2153..2525																											avrA	ABNYCR010000015.1	102634..103503	99.655	870	0						
GCA_032770395.1_PDT001786667.1_genomic.fna	Salmonella_enterica	0.5211	194.508 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYCP010000001.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYCP010000013.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.denovo.15, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYCP010000013.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.denovo.15, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYCP010000038.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.denovo.44, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYCP010000038.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.denovo.44, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNYCP010000055.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.guided.13, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYCP010000058.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.guided.29, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYCP010000058.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.guided.29, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYCP010000060.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.guided.43, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYCP010000060.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.guided.43, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNYCP010000035.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.denovo.40, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNYCP010000059.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.guided.39, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNYCP010000013.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.denovo.15, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYCP010000058.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.guided.29, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYCP010000013.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.denovo.15, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYCP010000058.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.guided.29, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYCP010000028.1 Salmonella enterica strain 23OH05CG01-S2 SAMN35839459-rid18517443.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABNYCP010000002.1	149828..150697	99.655	870	0						
GCA_032770415.1_PDT001786666.1_genomic.fna	Salmonella_enterica	0.5212	276.537 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYCO010000001.1 Salmonella enterica strain 23OH05CG04-S1 SAMN35839460-rid18526563.denovo.01, whole genome shotgun sequence	283033..283470	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYCO010000055.1 Salmonella enterica strain 23OH05CG04-S1 SAMN35839460-rid18526563.guided.37, whole genome shotgun sequence	13023..13460	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNYCO010000026.1 Salmonella enterica strain 23OH05CG04-S1 SAMN35839460-rid18526563.denovo.28, whole genome shotgun sequence	37672..38487	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNYCO010000053.1 Salmonella enterica strain 23OH05CG04-S1 SAMN35839460-rid18526563.guided.27, whole genome shotgun sequence	37713..38528	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNYCO010000040.1 Salmonella enterica strain 23OH05CG04-S1 SAMN35839460-rid18526563.denovo.45, whole genome shotgun sequence	1674..2873	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYCO010000056.1 Salmonella enterica strain 23OH05CG04-S1 SAMN35839460-rid18526563.guided.44, whole genome shotgun sequence	901..2100	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNYCO010000038.1 Salmonella enterica strain 23OH05CG04-S1 SAMN35839460-rid18526563.denovo.42, whole genome shotgun sequence	371..501	enterobacteriales	IncC	100	417 / 417	ABNYCO010000030.1 Salmonella enterica strain 23OH05CG04-S1 SAMN35839460-rid18526563.denovo.32, whole genome shotgun sequence	23618..24034																																																avrA	ABNYCO010000005.1	139746..140615	99.885	870	0						
GCA_032770435.1_PDT001786665.1_genomic.fna	Salmonella_enterica	0.521	282.542 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYCQ010000001.1 Salmonella enterica strain 23OH05CG04-S2 SAMN35839461-rid18529703.denovo.01, whole genome shotgun sequence	283033..283470	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYCQ010000051.1 Salmonella enterica strain 23OH05CG04-S2 SAMN35839461-rid18529703.guided.26, whole genome shotgun sequence	13022..13459	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNYCQ010000025.1 Salmonella enterica strain 23OH05CG04-S2 SAMN35839461-rid18529703.denovo.28, whole genome shotgun sequence	37672..38487	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNYCQ010000052.1 Salmonella enterica strain 23OH05CG04-S2 SAMN35839461-rid18529703.guided.27, whole genome shotgun sequence	37713..38528	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNYCQ010000039.1 Salmonella enterica strain 23OH05CG04-S2 SAMN35839461-rid18529703.denovo.43, whole genome shotgun sequence	1674..2873	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYCQ010000054.1 Salmonella enterica strain 23OH05CG04-S2 SAMN35839461-rid18529703.guided.44, whole genome shotgun sequence	901..2100	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNYCQ010000037.1 Salmonella enterica strain 23OH05CG04-S2 SAMN35839461-rid18529703.denovo.41, whole genome shotgun sequence	371..501	enterobacteriales	IncC	100	417 / 417	ABNYCQ010000029.1 Salmonella enterica strain 23OH05CG04-S2 SAMN35839461-rid18529703.denovo.32, whole genome shotgun sequence	23616..24032																																																avrA	ABNYCQ010000006.1	139746..140615	99.885	870	0						
GCA_032770455.1_PDT001786663.1_genomic.fna	Salmonella_enterica	0.5217	203.759 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,sul1,sul1,sul1,tet(A),tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYCS010000001.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.denovo.01, whole genome shotgun sequence	573947..574384	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYCS010000024.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.denovo.29, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYCS010000024.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.denovo.29, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYCS010000031.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.denovo.36, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYCS010000031.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.denovo.36, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNYCS010000038.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.denovo.45, whole genome shotgun sequence	93..908	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	X62115	aac(6')-Iaa	97.49	438/438	ABNYCS010000050.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.guided.24, whole genome shotgun sequence	12806..13243	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYCS010000051.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.guided.27, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYCS010000051.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.guided.27, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNYCS010000052.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.guided.28, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYCS010000052.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.guided.28, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYCS010000053.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.guided.39, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYCS010000053.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.guided.39, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNYCS010000054.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.guided.43, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	X62115	sul1	100	840/840	ABNYCS010000024.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.denovo.29, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYCS010000051.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.guided.27, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYCS010000052.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.guided.28, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYCS010000024.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.denovo.29, whole genome shotgun sequence	15825..17024	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYCS010000051.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.guided.27, whole genome shotgun sequence	15866..17065	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNYCS010000052.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.guided.28, whole genome shotgun sequence	15866..17065	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYCS010000027.1 Salmonella enterica strain 23OH05CB14-S1 SAMN35839463-rid18528163.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABNYCS010000002.1	149828..150697	99.655	870	0						
GCA_032770475.1_PDT001786662.1_genomic.fna	Salmonella_enterica	0.5218	443.894 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYCT010000001.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.denovo.01, whole genome shotgun sequence	573947..574384	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYCT010000025.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.denovo.27, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYCT010000025.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.denovo.27, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYCT010000033.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.denovo.37, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYCT010000033.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.denovo.37, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNYCT010000039.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.denovo.45, whole genome shotgun sequence	93..908	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	X62115	aadA1	99.75	792/792	ABNYCT010000047.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.guided.26, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYCT010000047.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.guided.26, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNYCT010000048.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.guided.32, whole genome shotgun sequence	17767..18204	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNYCT010000050.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.guided.39, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYCT010000050.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.guided.39, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNYCT010000051.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.guided.43, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	X62115	sul1	100	840/840	ABNYCT010000025.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.denovo.27, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYCT010000047.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.guided.26, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYCT010000025.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.denovo.27, whole genome shotgun sequence	15825..17024	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYCT010000047.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.guided.26, whole genome shotgun sequence	15866..17065	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYCT010000029.1 Salmonella enterica strain 23OH05CB14-S2 SAMN35839464-rid18520373.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABNYCT010000002.1	94085..94954	99.655	870	0						
GCA_032770495.1_PDT001786661.1_genomic.fna	Salmonella_enterica	0.5168	149.156 KB	9	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYCV010000013.1 Salmonella enterica strain 23OH05CB15-S1 SAMN35839465-rid18523303.denovo.013, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYCV010000036.1 Salmonella enterica strain 23OH05CB15-S1 SAMN35839465-rid18523303.denovo.038, whole genome shotgun sequence	2315..3151	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYCV010000036.1 Salmonella enterica strain 23OH05CB15-S1 SAMN35839465-rid18523303.denovo.038, whole genome shotgun sequence	1513..2315	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYCV010000036.1 Salmonella enterica strain 23OH05CB15-S1 SAMN35839465-rid18523303.denovo.038, whole genome shotgun sequence	1512..2315	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYCV010000036.1 Salmonella enterica strain 23OH05CB15-S1 SAMN35839465-rid18523303.denovo.038, whole genome shotgun sequence	1512..2315	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYCV010000036.1 Salmonella enterica strain 23OH05CB15-S1 SAMN35839465-rid18523303.denovo.038, whole genome shotgun sequence	1512..2315	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNYCV010000111.1 Salmonella enterica strain 23OH05CB15-S1 SAMN35839465-rid18523303.guided.037, whole genome shotgun sequence	2356..3192	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYCV010000111.1 Salmonella enterica strain 23OH05CB15-S1 SAMN35839465-rid18523303.guided.037, whole genome shotgun sequence	1554..2356	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYCV010000111.1 Salmonella enterica strain 23OH05CB15-S1 SAMN35839465-rid18523303.guided.037, whole genome shotgun sequence	1553..2356	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYCV010000111.1 Salmonella enterica strain 23OH05CB15-S1 SAMN35839465-rid18523303.guided.037, whole genome shotgun sequence	1553..2356	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYCV010000111.1 Salmonella enterica strain 23OH05CB15-S1 SAMN35839465-rid18523303.guided.037, whole genome shotgun sequence	1553..2356	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNYCV010000113.1 Salmonella enterica strain 23OH05CB15-S1 SAMN35839465-rid18523303.guided.074, whole genome shotgun sequence	2884..3321	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNYCV010000028.1 Salmonella enterica strain 23OH05CB15-S1 SAMN35839465-rid18523303.denovo.029, whole genome shotgun sequence	23143..23469	enterobacteriales	IncHI2A	99.52	630 / 630	ABNYCV010000028.1 Salmonella enterica strain 23OH05CB15-S1 SAMN35839465-rid18523303.denovo.029, whole genome shotgun sequence	41453..42082		enterobacteriales	IncX1	100	373 / 373	ABNYCV010000054.1 Salmonella enterica strain 23OH05CB15-S1 SAMN35839465-rid18523303.denovo.057, whole genome shotgun sequence	2218..2590																																									avrA	ABNYCV010000015.1	94214..95083	99.655	870	0						
GCA_032770515.1_PDT001786660.1_genomic.fna	Salmonella_enterica	0.5167	149.156 KB	9	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYCU010000019.1 Salmonella enterica strain 23OH05CB15-S2 SAMN35839466-rid18531093.denovo.019, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYCU010000037.1 Salmonella enterica strain 23OH05CB15-S2 SAMN35839466-rid18531093.denovo.039, whole genome shotgun sequence	2315..3151	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYCU010000037.1 Salmonella enterica strain 23OH05CB15-S2 SAMN35839466-rid18531093.denovo.039, whole genome shotgun sequence	1513..2315	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYCU010000037.1 Salmonella enterica strain 23OH05CB15-S2 SAMN35839466-rid18531093.denovo.039, whole genome shotgun sequence	1512..2315	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYCU010000037.1 Salmonella enterica strain 23OH05CB15-S2 SAMN35839466-rid18531093.denovo.039, whole genome shotgun sequence	1512..2315	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYCU010000037.1 Salmonella enterica strain 23OH05CB15-S2 SAMN35839466-rid18531093.denovo.039, whole genome shotgun sequence	1512..2315	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNYCU010000107.1 Salmonella enterica strain 23OH05CB15-S2 SAMN35839466-rid18531093.guided.038, whole genome shotgun sequence	2356..3192	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYCU010000107.1 Salmonella enterica strain 23OH05CB15-S2 SAMN35839466-rid18531093.guided.038, whole genome shotgun sequence	1554..2356	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYCU010000107.1 Salmonella enterica strain 23OH05CB15-S2 SAMN35839466-rid18531093.guided.038, whole genome shotgun sequence	1553..2356	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYCU010000107.1 Salmonella enterica strain 23OH05CB15-S2 SAMN35839466-rid18531093.guided.038, whole genome shotgun sequence	1553..2356	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYCU010000107.1 Salmonella enterica strain 23OH05CB15-S2 SAMN35839466-rid18531093.guided.038, whole genome shotgun sequence	1553..2356	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNYCU010000109.1 Salmonella enterica strain 23OH05CB15-S2 SAMN35839466-rid18531093.guided.049, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNYCU010000029.1 Salmonella enterica strain 23OH05CB15-S2 SAMN35839466-rid18531093.denovo.030, whole genome shotgun sequence	23143..23469	enterobacteriales	IncHI2A	99.52	630 / 630	ABNYCU010000029.1 Salmonella enterica strain 23OH05CB15-S2 SAMN35839466-rid18531093.denovo.030, whole genome shotgun sequence	41453..42082		enterobacteriales	IncX1	100	373 / 373	ABNYCU010000067.1 Salmonella enterica strain 23OH05CB15-S2 SAMN35839466-rid18531093.denovo.071, whole genome shotgun sequence	2218..2590																																									avrA	ABNYCU010000015.1	94214..95083	99.655	870	0						
GCA_032770545.1_PDT001786659.1_genomic.fna	Salmonella_enterica	0.5218	537.034 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYCX010000001.1 Salmonella enterica strain PNUSAS357725 SAMN35830383-rid18521773.denovo.01, whole genome shotgun sequence	407613..408050	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYCX010000041.1 Salmonella enterica strain PNUSAS357725 SAMN35830383-rid18521773.guided.24, whole genome shotgun sequence	6309..6746	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABNYCX010000013.1 Salmonella enterica strain PNUSAS357725 SAMN35830383-rid18521773.denovo.13, whole genome shotgun sequence	51983..52244																																																						avrA	ABNYCX010000003.1	496818..497686	99.425	870	0						
GCA_032770735.1_PDT001786645.1_genomic.fna	Salmonella_enterica	0.521	286.649 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYDG010000003.1 Salmonella enterica strain PNUSAS357726 SAMN35830382-rid18529673.denovo.03, whole genome shotgun sequence	162553..162990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYDG010000038.1 Salmonella enterica strain PNUSAS357726 SAMN35830382-rid18529673.guided.26, whole genome shotgun sequence	1423..1860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYDG010000021.1 Salmonella enterica strain PNUSAS357726 SAMN35830382-rid18529673.denovo.21, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNYDG010000021.1 Salmonella enterica strain PNUSAS357726 SAMN35830382-rid18529673.denovo.21, whole genome shotgun sequence	5032..5293																																																avrA	ABNYDG010000014.1	39351..40220	99.54	870	0						
GCA_032770755.1_PDT001786643.1_genomic.fna	Salmonella_enterica	0.5193	358.887 KB	5	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNYDH010000001.1 Salmonella enterica strain PNUSAS357721 SAMN35830387-rid18529663.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNYDH010000036.1 Salmonella enterica strain PNUSAS357721 SAMN35830387-rid18529663.guided.17, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNYDH010000024.1 Salmonella enterica strain PNUSAS357721 SAMN35830387-rid18529663.denovo.27, whole genome shotgun sequence	239..369																																																						avrA	ABNYDH010000002.1	655457..656326	99.425	870	0						
GCA_032770795.1_PDT001786636.1_genomic.fna	Salmonella_enterica	0.5217	472.831 KB	4	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYDJ010000001.1 Salmonella enterica strain PNUSAS357720 SAMN35830405-rid18526533.denovo.01, whole genome shotgun sequence	243592..244029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYDJ010000028.1 Salmonella enterica strain PNUSAS357720 SAMN35830405-rid18526533.guided.19, whole genome shotgun sequence	4832..5269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNYDJ010000013.1 Salmonella enterica strain PNUSAS357720 SAMN35830405-rid18526533.denovo.13, whole genome shotgun sequence	5891..6424																																																						avrA	ABNYDJ010000003.1	406234..407103	99.54	870	0						
GCA_032770815.1_PDT001786633.1_genomic.fna	Salmonella_enterica	0.5214	401.504 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYDL010000003.1 Salmonella enterica strain PNUSAS357723 SAMN35830385-rid18529653.denovo.03, whole genome shotgun sequence	162657..163094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYDL010000032.1 Salmonella enterica strain PNUSAS357723 SAMN35830385-rid18529653.guided.22, whole genome shotgun sequence	8064..8501	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYDL010000018.1 Salmonella enterica strain PNUSAS357723 SAMN35830385-rid18529653.denovo.18, whole genome shotgun sequence	47948..48590	enterobacteriales	IncFII(S)	100	262 / 262	ABNYDL010000018.1 Salmonella enterica strain PNUSAS357723 SAMN35830385-rid18529653.denovo.18, whole genome shotgun sequence	3704..3965																																																avrA	ABNYDL010000013.1	39488..40357	99.54	870	0						
GCA_032770835.1_PDT001786632.1_genomic.fna	Salmonella_enterica	0.5193	171.415 KB	8	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYDK010000003.1 Salmonella enterica strain PNUSAS357724 SAMN35830384-rid18520343.denovo.03, whole genome shotgun sequence	370303..370740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYDK010000054.1 Salmonella enterica strain PNUSAS357724 SAMN35830384-rid18520343.guided.35, whole genome shotgun sequence	7824..8261	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032770935.1_PDT001786609.1_genomic.fna	Salmonella_enterica	0.5213	492.604 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYDR010000001.1 Salmonella enterica strain PNUSAS357668 SAMN35820641-rid18523283.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYDR010000023.1 Salmonella enterica strain PNUSAS357668 SAMN35820641-rid18523283.guided.18, whole genome shotgun sequence	1081..1518	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYDR010000012.1 Salmonella enterica strain PNUSAS357668 SAMN35820641-rid18523283.denovo.12, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNYDR010000015.1 Salmonella enterica strain PNUSAS357668 SAMN35820641-rid18523283.denovo.17, whole genome shotgun sequence	3404..3665																																																avrA	ABNYDR010000002.1	553636..554505	99.54	870	0						
GCA_032770975.1_PDT001786607.1_genomic.fna	Salmonella_enterica	0.5225	761.796 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYDS010000001.1 Salmonella enterica strain PNUSAS357682 SAMN35820619-rid18518953.denovo.01, whole genome shotgun sequence	473682..474119	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYDS010000021.1 Salmonella enterica strain PNUSAS357682 SAMN35820619-rid18518953.guided.16, whole genome shotgun sequence	3090..3527	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYDS010000005.1	151330..152199	99.77	870	0						
GCA_032770995.1_PDT001786606.1_genomic.fna	Salmonella_enterica	0.5219	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYDU010000004.1 Salmonella enterica strain PNUSAS357675 SAMN35820629-rid18526503.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYDU010000056.1 Salmonella enterica strain PNUSAS357675 SAMN35820629-rid18526503.guided.48, whole genome shotgun sequence	99..536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNYDU010000018.1 Salmonella enterica strain PNUSAS357675 SAMN35820629-rid18526503.denovo.18, whole genome shotgun sequence	48430..49072	enterobacteriales	IncFII(S)	100	262 / 262	ABNYDU010000018.1 Salmonella enterica strain PNUSAS357675 SAMN35820629-rid18526503.denovo.18, whole genome shotgun sequence	64156..64417																																																avrA	ABNYDU010000006.1	94133..95001	100	869	0						
GCA_032771015.1_PDT001786604.1_genomic.fna	Salmonella_enterica	0.5204	478.725 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYDV010000001.1 Salmonella enterica strain PNUSAS357676 SAMN35820622-rid18528113.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYDV010000027.1 Salmonella enterica strain PNUSAS357676 SAMN35820622-rid18528113.guided.18, whole genome shotgun sequence	1996..2433	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYDV010000012.1 Salmonella enterica strain PNUSAS357676 SAMN35820622-rid18528113.denovo.12, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABNYDV010000017.1 Salmonella enterica strain PNUSAS357676 SAMN35820622-rid18528113.denovo.20, whole genome shotgun sequence	3340..3601		enterobacteriales	IncX1	98.93	374 / 374	ABNYDV010000013.1 Salmonella enterica strain PNUSAS357676 SAMN35820622-rid18528113.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNYDV010000002.1	553690..554559	99.54	870	0						
GCA_032771035.1_PDT001786602.1_genomic.fna	Salmonella_enterica	0.5212	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYDX010000001.1 Salmonella enterica strain PNUSAS357673 SAMN35820613-rid18532003.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYDX010000025.1 Salmonella enterica strain PNUSAS357673 SAMN35820613-rid18532003.guided.21, whole genome shotgun sequence	118..555	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYDX010000013.1 Salmonella enterica strain PNUSAS357673 SAMN35820613-rid18532003.denovo.14, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABNYDX010000017.1 Salmonella enterica strain PNUSAS357673 SAMN35820613-rid18532003.denovo.19, whole genome shotgun sequence	3367..3628																																																avrA	ABNYDX010000002.1	553312..554181	99.54	870	0						
GCA_032771055.1_PDT001786603.1_genomic.fna	Salmonella_enterica	0.5236	632.171 KB	3	aroC_140,dnaN_105,hemD_85,hisD_93,purE_14,sucA_10,thrA_3	440	35:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_85	hisD	100	100	hisD_93	purE	100	100	purE_14	sucA	100	100	sucA_10	thrA	100	100	thrA_3	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYDW010000001.1 Salmonella enterica strain PNUSAS357665 SAMN35820616-rid18529623.denovo.01, whole genome shotgun sequence	612882..613319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYDW010000027.1 Salmonella enterica strain PNUSAS357665 SAMN35820616-rid18529623.guided.22, whole genome shotgun sequence	330..767	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032771075.1_PDT001786608.1_genomic.fna	Salmonella_enterica	0.5209	214.028 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYDT010000002.1 Salmonella enterica strain PNUSAS357658 SAMN35820638-rid18532013.denovo.02, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYDT010000050.1 Salmonella enterica strain PNUSAS357658 SAMN35820638-rid18532013.guided.41, whole genome shotgun sequence	2147..2584	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNYDT010000020.1 Salmonella enterica strain PNUSAS357658 SAMN35820638-rid18532013.denovo.20, whole genome shotgun sequence	36050..36692	enterobacteriales	IncFII(S)	100	262 / 262	ABNYDT010000020.1 Salmonella enterica strain PNUSAS357658 SAMN35820638-rid18532013.denovo.20, whole genome shotgun sequence	51777..52038																																																avrA	ABNYDT010000001.1	506658..507527	99.885	870	0						
GCA_032771115.1_PDT001786601.1_genomic.fna	Salmonella_enterica	0.5227	761.777 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYDY010000001.1 Salmonella enterica strain PNUSAS357666 SAMN35820626-rid18524903.denovo.01, whole genome shotgun sequence	481936..482373	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYDY010000018.1 Salmonella enterica strain PNUSAS357666 SAMN35820626-rid18524903.guided.15, whole genome shotgun sequence	237..674	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYDY010000004.1	584255..585124	99.77	870	0						
GCA_032771135.1_PDT001786600.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYDZ010000001.1 Salmonella enterica strain PNUSAS357661 SAMN35820632-rid18520283.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYDZ010000023.1 Salmonella enterica strain PNUSAS357661 SAMN35820632-rid18520283.guided.16, whole genome shotgun sequence	9881..10318	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYDZ010000012.1 Salmonella enterica strain PNUSAS357661 SAMN35820632-rid18520283.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNYDZ010000015.1 Salmonella enterica strain PNUSAS357661 SAMN35820632-rid18520283.denovo.18, whole genome shotgun sequence	3395..3656																																																avrA	ABNYDZ010000002.1	553636..554505	99.54	870	0						
GCA_032771375.1_PDT001786598.1_genomic.fna	Salmonella_enterica	0.5223	288.634 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYEN010000001.1 Salmonella enterica strain PNUSAS352024 SAMN35820802-rid18528103.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYEN010000041.1 Salmonella enterica strain PNUSAS352024 SAMN35820802-rid18528103.guided.25, whole genome shotgun sequence	1471..1908	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNYEN010000025.1 Salmonella enterica strain PNUSAS352024 SAMN35820802-rid18528103.denovo.28, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNYEN010000027.1 Salmonella enterica strain PNUSAS352024 SAMN35820802-rid18528103.denovo.30, whole genome shotgun sequence	2528..2639																																																avrA	ABNYEN010000005.1	174277..175145	99.425	870	0						
GCA_032771395.1_PDT001786599.1_genomic.fna	Salmonella_enterica	0.5209	707.807 KB	2	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYEM010000001.1 Salmonella enterica strain PNUSAS357662 SAMN35820635-rid18523273.denovo.01, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYEM010000021.1 Salmonella enterica strain PNUSAS357662 SAMN35820635-rid18523273.guided.13, whole genome shotgun sequence	3132..3569	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032771415.1_PDT001786597.1_genomic.fna	Salmonella_enterica	0.5212	478.555 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYEO010000001.1 Salmonella enterica strain PNUSAS357670 SAMN35820639-rid18523263.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYEO010000023.1 Salmonella enterica strain PNUSAS357670 SAMN35820639-rid18523263.guided.19, whole genome shotgun sequence	2702..3139	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYEO010000012.1 Salmonella enterica strain PNUSAS357670 SAMN35820639-rid18523263.denovo.13, whole genome shotgun sequence	40536..41178	enterobacteriales	IncFII(S)	100	262 / 262	ABNYEO010000016.1 Salmonella enterica strain PNUSAS357670 SAMN35820639-rid18523263.denovo.18, whole genome shotgun sequence	3421..3682																																																avrA	ABNYEO010000002.1	553636..554505	99.54	870	0						
GCA_032771515.1_PDT001786592.1_genomic.fna	Salmonella_enterica	0.5214	421.764 KB	4	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNYEQ010000001.1 Salmonella enterica strain PNUSAS357683 SAMN35820620-rid18521723.denovo.01, whole genome shotgun sequence	346928..347365	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNYEQ010000024.1 Salmonella enterica strain PNUSAS357683 SAMN35820620-rid18521723.guided.18, whole genome shotgun sequence	10968..11405	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYEQ010000007.1	150992..151861	99.54	870	0						
GCA_032771535.1_PDT001786586.1_genomic.fna	Salmonella_enterica	0.5213	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYES010000001.1 Salmonella enterica strain PNUSAS357669 SAMN35820642-rid18523223.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYES010000022.1 Salmonella enterica strain PNUSAS357669 SAMN35820642-rid18523223.guided.15, whole genome shotgun sequence	20059..20496	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYES010000011.1 Salmonella enterica strain PNUSAS357669 SAMN35820642-rid18523223.denovo.11, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNYES010000014.1 Salmonella enterica strain PNUSAS357669 SAMN35820642-rid18523223.denovo.17, whole genome shotgun sequence	3402..3663																																																avrA	ABNYES010000002.1	553636..554505	99.54	870	0						
GCA_032771555.1_PDT001786585.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYET010000001.1 Salmonella enterica strain PNUSAS357684 SAMN35820614-rid18518923.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYET010000023.1 Salmonella enterica strain PNUSAS357684 SAMN35820614-rid18518923.guided.18, whole genome shotgun sequence	2161..2598	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYET010000012.1 Salmonella enterica strain PNUSAS357684 SAMN35820614-rid18518923.denovo.12, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABNYET010000015.1 Salmonella enterica strain PNUSAS357684 SAMN35820614-rid18518923.denovo.16, whole genome shotgun sequence	3374..3635																																																avrA	ABNYET010000002.1	553636..554505	99.54	870	0						
GCA_032771575.1_PDT001786584.1_genomic.fna	Salmonella_enterica	0.5199	507.623 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYEU010000001.1 Salmonella enterica strain PNUSAS357674 SAMN35820612-rid18521713.denovo.01, whole genome shotgun sequence	493338..493775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYEU010000036.1 Salmonella enterica strain PNUSAS357674 SAMN35820612-rid18521713.guided.31, whole genome shotgun sequence	1105..1542	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYEU010000004.1	128283..129152	98.966	870	0						
GCA_032771595.1_PDT001786583.1_genomic.fna	Salmonella_enterica	0.5207	707.807 KB	3	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYEV010000002.1 Salmonella enterica strain PNUSAS357671 SAMN35820630-rid18531003.denovo.02, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYEV010000027.1 Salmonella enterica strain PNUSAS357671 SAMN35820630-rid18531003.guided.18, whole genome shotgun sequence	2521..2958	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032771615.1_PDT001786582.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYEW010000001.1 Salmonella enterica strain PNUSAS357656 SAMN35820627-rid18521703.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYEW010000025.1 Salmonella enterica strain PNUSAS357656 SAMN35820627-rid18521703.guided.18, whole genome shotgun sequence	5259..5696	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYEW010000012.1 Salmonella enterica strain PNUSAS357656 SAMN35820627-rid18521703.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNYEW010000015.1 Salmonella enterica strain PNUSAS357656 SAMN35820627-rid18521703.denovo.17, whole genome shotgun sequence	3331..3592																																																avrA	ABNYEW010000002.1	553636..554505	99.54	870	0						
GCA_032771635.1_PDT001786587.1_genomic.fna	Salmonella_enterica	0.5218	509.596 KB	3	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYER010000001.1 Salmonella enterica strain PNUSAS357679 SAMN35820624-rid18523233.denovo.01, whole genome shotgun sequence	648150..648587	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYER010000027.1 Salmonella enterica strain PNUSAS357679 SAMN35820624-rid18523233.guided.24, whole genome shotgun sequence	76..513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYER010000005.1	94992..95861	99.425	870	0						
GCA_032771655.1_PDT001786580.1_genomic.fna	Salmonella_enterica	0.5211	734.87 KB	2	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYEY010000001.1 Salmonella enterica strain PNUSAS357655 SAMN35820617-rid18517413.denovo.01, whole genome shotgun sequence	647800..648237	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYEY010000025.1 Salmonella enterica strain PNUSAS357655 SAMN35820617-rid18517413.guided.20, whole genome shotgun sequence	693..1130	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYEY010000002.1	510774..511643	99.425	870	0						
GCA_032771675.1_PDT001786581.1_genomic.fna	Salmonella_enterica	0.5221	723.449 KB	2	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYEX010000001.1 Salmonella enterica strain PNUSAS357659 SAMN35820633-rid18526493.denovo.01, whole genome shotgun sequence	420748..421185	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.93	374/438	ABNYEX010000023.1 Salmonella enterica strain PNUSAS357659 SAMN35820633-rid18526493.guided.17, whole genome shotgun sequence	1..374	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYEX010000002.1	509825..510691	99.08	870	0						
GCA_032771695.1_PDT001786579.1_genomic.fna	Salmonella_enterica	0.522	529.773 KB	3	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYEZ010000001.1 Salmonella enterica strain PNUSAS357654 SAMN35820625-rid18528083.denovo.01, whole genome shotgun sequence	500874..501311	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYEZ010000023.1 Salmonella enterica strain PNUSAS357654 SAMN35820625-rid18528083.guided.21, whole genome shotgun sequence	363..800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYEZ010000003.1	182186..183055	98.966	870	0						
GCA_032771715.1_PDT001786578.1_genomic.fna	Salmonella_enterica	0.5215	509.596 KB	2	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYFA010000001.1 Salmonella enterica strain PNUSAS357660 SAMN35820631-rid18529613.denovo.01, whole genome shotgun sequence	648315..648752	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYFA010000028.1 Salmonella enterica strain PNUSAS357660 SAMN35820631-rid18529613.guided.24, whole genome shotgun sequence	248..685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYFA010000003.1	149431..150300	99.425	870	0						
GCA_032771735.1_PDT001786576.1_genomic.fna	Salmonella_enterica	0.5213	489.739 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYFC010000001.1 Salmonella enterica strain PNUSAS357678 SAMN35820623-rid18524883.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYFC010000027.1 Salmonella enterica strain PNUSAS357678 SAMN35820623-rid18524883.guided.24, whole genome shotgun sequence	36..473	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYFC010000012.1 Salmonella enterica strain PNUSAS357678 SAMN35820623-rid18524883.denovo.12, whole genome shotgun sequence	40526..41168	enterobacteriales	IncFII(S)	100	262 / 262	ABNYFC010000015.1 Salmonella enterica strain PNUSAS357678 SAMN35820623-rid18524883.denovo.15, whole genome shotgun sequence	3402..3663																																																avrA	ABNYFC010000002.1	553193..554062	99.54	870	0						
GCA_032771755.1_PDT001786570.1_genomic.fna	Salmonella_enterica	0.5214	693.526 KB	2	aroC_179,dnaN_160,hemD_10,hisD_122,purE_61,sucA_8,thrA_157	531	8:i:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_179	dnaN	100	100	dnaN_160	hemD	100	100	hemD_10	hisD	100	100	hisD_122	purE	100	100	purE_61	sucA	100	100	sucA_8	thrA	100	100	thrA_157	8	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	Takoradi or Bargny	The predicted serotypes share the same general formula: 8:i:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNYFE010000001.1 Salmonella enterica strain PNUSAS357657 SAMN35820628-rid18517403.denovo.01, whole genome shotgun sequence	656349..656786	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNYFE010000025.1 Salmonella enterica strain PNUSAS357657 SAMN35820628-rid18517403.guided.15, whole genome shotgun sequence	12148..12585	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYFE010000002.1	542136..543005	99.08	870	0						
GCA_032771775.1_PDT001786574.1_genomic.fna	Salmonella_enterica	0.5207	707.807 KB	2	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYFF010000001.1 Salmonella enterica strain PNUSAS357672 SAMN35820634-rid18524873.denovo.01, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYFF010000023.1 Salmonella enterica strain PNUSAS357672 SAMN35820634-rid18524873.guided.13, whole genome shotgun sequence	4018..4455	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032771785.1_PDT001786575.1_genomic.fna	Salmonella_enterica	0.5222	498.624 KB	4	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNYFD010000007.1 Salmonella enterica strain PNUSAS357681 SAMN35820618-rid18520273.denovo.07, whole genome shotgun sequence	145121..145558	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNYFD010000027.1 Salmonella enterica strain PNUSAS357681 SAMN35820618-rid18520273.guided.23, whole genome shotgun sequence	141..578	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYFD010000002.1	552941..553811	99.656	871	0						
GCA_032771795.1_PDT001786577.1_genomic.fna	Salmonella_enterica	0.5206	429.567 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNYFB010000001.1 Salmonella enterica strain PNUSAS357667 SAMN35820640-rid18528073.denovo.01, whole genome shotgun sequence	682941..683378	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNYFB010000028.1 Salmonella enterica strain PNUSAS357667 SAMN35820640-rid18528073.guided.23, whole genome shotgun sequence	119..556	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYFB010000004.1	148520..149389	99.77	870	0						
GCA_032771835.1_PDT001786573.1_genomic.fna	Salmonella_enterica	0.5212	391.756 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYFG010000001.1 Salmonella enterica strain PNUSAS357664 SAMN35820637-rid18530993.denovo.01, whole genome shotgun sequence	563817..564254	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYFG010000034.1 Salmonella enterica strain PNUSAS357664 SAMN35820637-rid18530993.guided.31, whole genome shotgun sequence	57..494	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYFG010000012.1	93876..94744	99.195	870	0						
GCA_032771855.1_PDT001786572.1_genomic.fna	Salmonella_enterica	0.5221	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYFH010000003.1 Salmonella enterica strain PNUSAS357677 SAMN35820621-rid18521693.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYFH010000038.1 Salmonella enterica strain PNUSAS357677 SAMN35820621-rid18521693.guided.30, whole genome shotgun sequence	3292..3729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNYFH010000015.1 Salmonella enterica strain PNUSAS357677 SAMN35820621-rid18521693.denovo.15, whole genome shotgun sequence	48415..49057	enterobacteriales	IncFII(S)	100	262 / 262	ABNYFH010000015.1 Salmonella enterica strain PNUSAS357677 SAMN35820621-rid18521693.denovo.15, whole genome shotgun sequence	64142..64403																																																avrA	ABNYFH010000005.1	175008..175876	100	869	0						
GCA_032771875.1_PDT001786571.1_genomic.fna	Salmonella_enterica	0.521	279.77 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul2,tet(B),tet(B)	0		2	Col(pHAD28),Col440I	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYFI010000001.1 Salmonella enterica strain PNUSAS357680 SAMN35820615-rid18526483.denovo.01, whole genome shotgun sequence	580197..580634	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYFI010000037.1 Salmonella enterica strain PNUSAS357680 SAMN35820615-rid18526483.denovo.40, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYFI010000037.1 Salmonella enterica strain PNUSAS357680 SAMN35820615-rid18526483.denovo.40, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNYFI010000058.1 Salmonella enterica strain PNUSAS357680 SAMN35820615-rid18526483.guided.41, whole genome shotgun sequence	3384..4220	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYFI010000058.1 Salmonella enterica strain PNUSAS357680 SAMN35820615-rid18526483.guided.41, whole genome shotgun sequence	2581..3384	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNYFI010000059.1 Salmonella enterica strain PNUSAS357680 SAMN35820615-rid18526483.guided.45, whole genome shotgun sequence	615..1052	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNYFI010000042.1 Salmonella enterica strain PNUSAS357680 SAMN35820615-rid18526483.denovo.49, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNYFI010000060.1 Salmonella enterica strain PNUSAS357680 SAMN35820615-rid18526483.guided.47, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNYFI010000040.1 Salmonella enterica strain PNUSAS357680 SAMN35820615-rid18526483.denovo.44, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNYFI010000062.1 Salmonella enterica strain PNUSAS357680 SAMN35820615-rid18526483.guided.51, whole genome shotgun sequence	517..1161	Ciprofloxacin	EU432277	sul2	100	816/816	ABNYFI010000037.1 Salmonella enterica strain PNUSAS357680 SAMN35820615-rid18526483.denovo.40, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNYFI010000058.1 Salmonella enterica strain PNUSAS357680 SAMN35820615-rid18526483.guided.41, whole genome shotgun sequence	1705..2520	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNYFI010000030.1 Salmonella enterica strain PNUSAS357680 SAMN35820615-rid18526483.denovo.32, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYFI010000057.1 Salmonella enterica strain PNUSAS357680 SAMN35820615-rid18526483.guided.35, whole genome shotgun sequence	4949..6154	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	100	131 / 131	ABNYFI010000040.1 Salmonella enterica strain PNUSAS357680 SAMN35820615-rid18526483.denovo.44, whole genome shotgun sequence	1150..1280	enterobacteriales	Col440I	92.98	114 / 114	ABNYFI010000043.1 Salmonella enterica strain PNUSAS357680 SAMN35820615-rid18526483.denovo.50, whole genome shotgun sequence	571..684																																																avrA	ABNYFI010000002.1	508765..509634	99.885	870	0						
GCA_032771895.1_PDT001786567.1_genomic.fna	Salmonella_enterica	0.522	106.361 KB	18	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYFK010000005.1 Salmonella enterica strain PNUSAS357648 SAMN35820171-rid18528063.denovo.05, whole genome shotgun sequence	17232..17669	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYFK010000088.1 Salmonella enterica strain PNUSAS357648 SAMN35820171-rid18528063.guided.63, whole genome shotgun sequence	7630..8067	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYFK010000033.1 Salmonella enterica strain PNUSAS357648 SAMN35820171-rid18528063.denovo.33, whole genome shotgun sequence	48112..48754	enterobacteriales	IncFII(S)	100	262 / 262	ABNYFK010000033.1 Salmonella enterica strain PNUSAS357648 SAMN35820171-rid18528063.denovo.33, whole genome shotgun sequence	3859..4120																																																avrA	ABNYFK010000007.1	140720..141589	99.54	870	0						
GCA_032771955.1_PDT001786565.1_genomic.fna	Salmonella_enterica	0.5216	175.286 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYFM010000001.1 Salmonella enterica strain PNUSAS357647 SAMN35820174-rid18520263.denovo.01, whole genome shotgun sequence	384188..384625	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYFM010000068.1 Salmonella enterica strain PNUSAS357647 SAMN35820174-rid18520263.guided.35, whole genome shotgun sequence	10863..11300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	90.91	132 / 131	ABNYFM010000058.1 Salmonella enterica strain PNUSAS357647 SAMN35820174-rid18520263.denovo.61, whole genome shotgun sequence	1189..1319	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYFM010000039.1 Salmonella enterica strain PNUSAS357647 SAMN35820174-rid18520263.denovo.40, whole genome shotgun sequence	6818..7460		enterobacteriales	IncFII(S)	100	262 / 262	ABNYFM010000046.1 Salmonella enterica strain PNUSAS357647 SAMN35820174-rid18520263.denovo.49, whole genome shotgun sequence	3392..3653																																									avrA	ABNYFM010000007.1	99047..99916	99.54	870	0						
GCA_032772055.1_PDT001786558.1_genomic.fna	Salmonella_enterica	0.5213	142.788 KB	10	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYFR010000001.1 Salmonella enterica strain PNUSAS357650 SAMN35820175-rid18529593.denovo.01, whole genome shotgun sequence	471837..472274	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYFR010000066.1 Salmonella enterica strain PNUSAS357650 SAMN35820175-rid18529593.guided.47, whole genome shotgun sequence	10784..11221	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNYFR010000053.1 Salmonella enterica strain PNUSAS357650 SAMN35820175-rid18529593.denovo.56, whole genome shotgun sequence	203..333																																																						avrA	ABNYFR010000005.1	97540..98409	99.425	870	0						
GCA_032772075.1_PDT001786557.1_genomic.fna	Salmonella_enterica	0.5216	131.56 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYFS010000005.1 Salmonella enterica strain PNUSAS357649 SAMN35820176-rid18528053.denovo.05, whole genome shotgun sequence	17333..17770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYFS010000066.1 Salmonella enterica strain PNUSAS357649 SAMN35820176-rid18528053.guided.55, whole genome shotgun sequence	2294..2731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNYFS010000059.1 Salmonella enterica strain PNUSAS357649 SAMN35820176-rid18528053.denovo.61, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYFS010000030.1 Salmonella enterica strain PNUSAS357649 SAMN35820176-rid18528053.denovo.30, whole genome shotgun sequence	40540..41182		enterobacteriales	IncFII(S)	100	262 / 262	ABNYFS010000048.1 Salmonella enterica strain PNUSAS357649 SAMN35820176-rid18528053.denovo.48, whole genome shotgun sequence	3395..3656																																									avrA	ABNYFS010000012.1	43575..44444	99.54	870	0						
GCA_032772095.1_PDT001786556.1_genomic.fna	Salmonella_enterica	0.5204	397.347 KB	5	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYFT010000001.1 Salmonella enterica strain PNUSAS357653 SAMN35820169-rid18524843.denovo.01, whole genome shotgun sequence	675884..676321	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYFT010000040.1 Salmonella enterica strain PNUSAS357653 SAMN35820169-rid18524843.guided.30, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNYFT010000031.1 Salmonella enterica strain PNUSAS357653 SAMN35820169-rid18524843.denovo.34, whole genome shotgun sequence	1905..2035																																																						avrA	ABNYFT010000003.1	99394..100263	98.966	870	0						
GCA_032772115.1_PDT001786555.1_genomic.fna	Salmonella_enterica	0.5219	90.944 KB	15	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYFU010000001.1 Salmonella enterica strain PNUSAS357652 SAMN35820172-rid18520253.denovo.01, whole genome shotgun sequence	83586..84023	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYFU010000085.1 Salmonella enterica strain PNUSAS357652 SAMN35820172-rid18520253.guided.40, whole genome shotgun sequence	15414..15851	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYFU010000019.1	81482..82351	99.655	870	0						
GCA_032772135.1_PDT001786554.1_genomic.fna	Salmonella_enterica	0.5217	75.187 KB	19	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYFV010000001.1 Salmonella enterica strain PNUSAS357651 SAMN35820173-rid18524833.denovo.001, whole genome shotgun sequence	12519..12956	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYFV010000122.1 Salmonella enterica strain PNUSAS357651 SAMN35820173-rid18524833.guided.091, whole genome shotgun sequence	1645..2082	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNYFV010000083.1 Salmonella enterica strain PNUSAS357651 SAMN35820173-rid18524833.denovo.083, whole genome shotgun sequence	10940..12145	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYFV010000123.1 Salmonella enterica strain PNUSAS357651 SAMN35820173-rid18524833.guided.100, whole genome shotgun sequence	1106..2311	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABNYFV010000003.1	93865..94734	99.885	870	0						
GCA_032772155.1_PDT001786553.1_genomic.fna	Salmonella_enterica	0.5208	102.69 KB	16	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYFW010000001.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.denovo.001, whole genome shotgun sequence	134924..135361	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYFW010000063.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.denovo.063, whole genome shotgun sequence	11987..12778	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYFW010000063.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.denovo.063, whole genome shotgun sequence	11987..12778	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYFW010000079.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.denovo.083, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYFW010000079.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.denovo.083, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNYFW010000111.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.guided.082, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYFW010000111.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.guided.082, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYFW010000112.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.guided.086, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYFW010000112.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.guided.086, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNYFW010000113.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.guided.088, whole genome shotgun sequence	189..626	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	ABNYFW010000074.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.denovo.075, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNYFW010000110.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.guided.079, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNYFW010000063.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.denovo.063, whole genome shotgun sequence	10643..11482	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYFW010000111.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.guided.082, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYFW010000058.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.denovo.058, whole genome shotgun sequence	928..2127	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYFW010000108.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.guided.073, whole genome shotgun sequence	271..1470	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNYFW010000073.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.denovo.074, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNYFW010000115.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.guided.098, whole genome shotgun sequence	920..1393	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYFW010000053.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.denovo.053, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX1	98.66	374 / 374	ABNYFW010000062.1 Salmonella enterica strain 23CA05CG01CC-S1 SAMN35819916-rid18530973.denovo.062, whole genome shotgun sequence	17123..17496																																																avrA	ABNYFW010000002.1	81701..82570	99.655	870	0						
GCA_032772175.1_PDT001786552.1_genomic.fna	Salmonella_enterica	0.5209	476.918 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYFX010000001.1 Salmonella enterica strain PNUSAS357402 SAMN35819458-rid18521673.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYFX010000028.1 Salmonella enterica strain PNUSAS357402 SAMN35819458-rid18521673.guided.19, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYFX010000015.1 Salmonella enterica strain PNUSAS357402 SAMN35819458-rid18521673.denovo.16, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNYFX010000019.1 Salmonella enterica strain PNUSAS357402 SAMN35819458-rid18521673.denovo.22, whole genome shotgun sequence	3404..3665																																																avrA	ABNYFX010000002.1	553636..554505	99.54	870	0						
GCA_032772195.1_PDT001786548.1_genomic.fna	Salmonella_enterica	0.5212	375.154 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYFY010000002.1 Salmonella enterica strain PNUSAS357619 SAMN35819017-rid18529583.denovo.02, whole genome shotgun sequence	384964..385401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYFY010000028.1 Salmonella enterica strain PNUSAS357619 SAMN35819017-rid18529583.guided.24, whole genome shotgun sequence	2722..3159	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYFY010000006.1	149712..150581	99.425	870	0						
GCA_032772215.1_PDT001786547.1_genomic.fna	Salmonella_enterica	0.5209	464.267 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYFZ010000001.1 Salmonella enterica strain PNUSAS357401 SAMN35819455-rid18528043.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYFZ010000028.1 Salmonella enterica strain PNUSAS357401 SAMN35819455-rid18528043.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYFZ010000015.1 Salmonella enterica strain PNUSAS357401 SAMN35819455-rid18528043.denovo.16, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNYFZ010000021.1 Salmonella enterica strain PNUSAS357401 SAMN35819455-rid18528043.denovo.24, whole genome shotgun sequence	3395..3656																																																avrA	ABNYFZ010000002.1	553636..554505	99.54	870	0						
GCA_032772235.1_PDT001786544.1_genomic.fna	Salmonella_enterica	0.5225	263.453 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(3)-VIa,aac(6')-Iaa,aac(3)-VIa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYGC010000001.1 Salmonella enterica strain PNUSAS357641 SAMN35819152-rid18524813.denovo.01, whole genome shotgun sequence	460175..460612	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNYGC010000016.1 Salmonella enterica strain PNUSAS357641 SAMN35819152-rid18524813.denovo.16, whole genome shotgun sequence	74146..75048	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aac(6')-Iaa	97.49	438/438	ABNYGC010000038.1 Salmonella enterica strain PNUSAS357641 SAMN35819152-rid18524813.guided.22, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNYGC010000041.1 Salmonella enterica strain PNUSAS357641 SAMN35819152-rid18524813.guided.32, whole genome shotgun sequence	715..1617	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNYGC010000016.1 Salmonella enterica strain PNUSAS357641 SAMN35819152-rid18524813.denovo.16, whole genome shotgun sequence	81571..81712																																																						avrA	ABNYGC010000005.1	149828..150697	99.655	870	0						
GCA_032772255.1_PDT001786545.1_genomic.fna	Salmonella_enterica	0.5219	382.606 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_112,sucA_9,thrA_2	313	4:i:1,2	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,aac(6')-Iaa,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_112	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYGB010000002.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.denovo.02, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYGB010000030.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.denovo.31, whole genome shotgun sequence	13992..14828	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYGB010000030.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.denovo.31, whole genome shotgun sequence	14828..15631	Streptomycin	AF321551	aadA1	100	792/792	ABNYGB010000030.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.denovo.31, whole genome shotgun sequence	11388..12179	Spectinomycin, Streptomycin	JX185132	aac(6')-Iaa	100	438/438	ABNYGB010000050.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.guided.21, whole genome shotgun sequence	24568..25005	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNYGB010000054.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.guided.39, whole genome shotgun sequence	1811..2602	Spectinomycin, Streptomycin	JX185132	aph(6)-Id	100	837/837	ABNYGB010000055.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.guided.40, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYGB010000055.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.guided.40, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNYGB010000039.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.denovo.46, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNYGB010000056.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.guided.45, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	ABNYGB010000030.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.denovo.31, whole genome shotgun sequence	3312..3971	Chloramphenicol	V00622	catA1	99.85	660/660	ABNYGB010000053.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.guided.36, whole genome shotgun sequence	5512..6171	Chloramphenicol	V00622	sul1	100	840/840	ABNYGB010000030.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.denovo.31, whole genome shotgun sequence	10044..10883	Sulfamethoxazole	U12338	sul2	100	816/816	ABNYGB010000030.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.denovo.31, whole genome shotgun sequence	15692..16507	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABNYGB010000054.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.guided.39, whole genome shotgun sequence	3107..3946	Sulfamethoxazole	U12338	sul2	100	816/816	ABNYGB010000055.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.guided.40, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	dfrA1	99.79	474/474	ABNYGB010000030.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.denovo.31, whole genome shotgun sequence	12272..12745	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNYGB010000030.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.denovo.31, whole genome shotgun sequence	12272..12745	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNYGB010000030.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.denovo.31, whole genome shotgun sequence	12272..12745	Trimethoprim	X00926	dfrA1	99.79	474/474	ABNYGB010000054.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.guided.39, whole genome shotgun sequence	1245..1718	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNYGB010000054.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.guided.39, whole genome shotgun sequence	1245..1718	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNYGB010000054.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.guided.39, whole genome shotgun sequence	1245..1718	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFIB(S)	100	643 / 643	ABNYGB010000020.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.denovo.20, whole genome shotgun sequence	19600..20242	enterobacteriales	IncFII(S)	100	262 / 262	ABNYGB010000020.1 Salmonella enterica strain PNUSAS357646 SAMN35819146-rid18520243.denovo.20, whole genome shotgun sequence	35303..35564																																																avrA	ABNYGB010000001.1	483295..484164	99.885	870	0						
GCA_032772275.1_PDT001786546.1_genomic.fna	Salmonella_enterica	0.5217	150.376 KB	10	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul2,tet(B),tet(B)	1	acrB_p.R717L	2	Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYGA010000001.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.denovo.01, whole genome shotgun sequence	143205..143642	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYGA010000053.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.denovo.57, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYGA010000053.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.denovo.57, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNYGA010000067.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.guided.43, whole genome shotgun sequence	13277..13714	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYGA010000071.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.guided.58, whole genome shotgun sequence	3348..4184	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYGA010000071.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.guided.58, whole genome shotgun sequence	2545..3348	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNYGA010000059.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.denovo.65, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNYGA010000072.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.guided.64, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNYGA010000057.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.denovo.62, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNYGA010000073.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.guided.68, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABNYGA010000053.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.denovo.57, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNYGA010000071.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.guided.58, whole genome shotgun sequence	1669..2484	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNYGA010000043.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.denovo.44, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYGA010000070.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.guided.50, whole genome shotgun sequence	6193..7398	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																						acrB p.R717L	CGA -> CTA	R -> L	Azithromycin	-																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNYGA010000054.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.denovo.59, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNYGA010000057.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.denovo.62, whole genome shotgun sequence	1150..1280		enterobacteriales	Col440I	92.98	114 / 114	ABNYGA010000060.1 Salmonella enterica strain PNUSAS357622 SAMN35819020-rid18524823.denovo.66, whole genome shotgun sequence	571..684																																									avrA	ABNYGA010000012.1	77578..78447	99.885	870	0						
GCA_032772295.1_PDT001786543.1_genomic.fna	Salmonella_enterica	0.5224	83.959 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYGD010000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322773 SAMN35820000-rid18530963.denovo.004, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYGD010000125.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322773 SAMN35820000-rid18530963.guided.040, whole genome shotgun sequence	30004..30441	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNYGD010000086.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322773 SAMN35820000-rid18530963.denovo.089, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNYGD010000050.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322773 SAMN35820000-rid18530963.denovo.052, whole genome shotgun sequence	29371..29632																																																avrA	ABNYGD010000012.1	31740..32608	100	869	0						
GCA_032772315.1_PDT001786542.1_genomic.fna	Salmonella_enterica	0.5201	66.834 KB	23	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYGE010000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322779 SAMN35820077-rid18523213.denovo.009, whole genome shotgun sequence	75315..75752	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYGE010000091.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322779 SAMN35820077-rid18523213.denovo.094, whole genome shotgun sequence	6545..7381	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYGE010000091.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322779 SAMN35820077-rid18523213.denovo.094, whole genome shotgun sequence	7381..8184	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNYGE010000165.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322779 SAMN35820077-rid18523213.guided.059, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYGE010000167.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322779 SAMN35820077-rid18523213.guided.114, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYGE010000167.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322779 SAMN35820077-rid18523213.guided.114, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNYGE010000118.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322779 SAMN35820077-rid18523213.denovo.123, whole genome shotgun sequence	697..1902	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYGE010000168.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322779 SAMN35820077-rid18523213.guided.122, whole genome shotgun sequence	2340..3545	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNYGE010000117.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322779 SAMN35820077-rid18523213.denovo.121, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNYGE010000091.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322779 SAMN35820077-rid18523213.denovo.094, whole genome shotgun sequence	5661..5922		enterobacteriales	IncFII	96.95	262 / 261	ABNYGE010000167.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322779 SAMN35820077-rid18523213.guided.114, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNYGE010000119.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322779 SAMN35820077-rid18523213.denovo.124, whole genome shotgun sequence	260..401		enterobacteriales	IncX1	100	373 / 373	ABNYGE010000124.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322779 SAMN35820077-rid18523213.denovo.129, whole genome shotgun sequence	2153..2525																											avrA	ABNYGE010000041.1	17667..18536	99.655	870	0						
GCA_032772335.1_PDT001786541.1_genomic.fna	Salmonella_enterica	0.5217	118.362 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYGG010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322795 SAMN35820348-rid18530953.denovo.01, whole genome shotgun sequence	76124..76561	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYGG010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322795 SAMN35820348-rid18530953.denovo.47, whole genome shotgun sequence	22731..23522	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYGG010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322795 SAMN35820348-rid18530953.denovo.47, whole genome shotgun sequence	22731..23522	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNYGG010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322795 SAMN35820348-rid18530953.guided.49, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYGG010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322795 SAMN35820348-rid18530953.guided.75, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYGG010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322795 SAMN35820348-rid18530953.guided.75, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNYGG010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322795 SAMN35820348-rid18530953.denovo.47, whole genome shotgun sequence	21387..22226	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYGG010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322795 SAMN35820348-rid18530953.guided.75, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYGG010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322795 SAMN35820348-rid18530953.denovo.47, whole genome shotgun sequence	7671..8870	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYGG010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322795 SAMN35820348-rid18530953.guided.69, whole genome shotgun sequence	1907..3106	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYGG010000029.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322795 SAMN35820348-rid18530953.denovo.29, whole genome shotgun sequence	51863..52422																																																						avrA	ABNYGG010000003.1	149828..150697	99.655	870	0						
GCA_032772375.1_PDT001786540.1_genomic.fna	Salmonella_enterica	0.5221	159.934 KB	9	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,ColpVC,ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYGF010000002.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322781 SAMN35820145-rid18518893.denovo.02, whole genome shotgun sequence	223905..224342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYGF010000065.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322781 SAMN35820145-rid18518893.guided.35, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABNYGF010000047.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322781 SAMN35820145-rid18518893.denovo.51, whole genome shotgun sequence	2246..2354	enterobacteriales	ColpVC	98.45	193 / 193	ABNYGF010000048.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322781 SAMN35820145-rid18518893.denovo.52, whole genome shotgun sequence	519..711		enterobacteriales	ColpVC	98.96	193 / 193	ABNYGF010000049.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322781 SAMN35820145-rid18518893.denovo.53, whole genome shotgun sequence	805..997		enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	ABNYGF010000024.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322781 SAMN35820145-rid18518893.denovo.24, whole genome shotgun sequence	51939..52078																																													
GCA_032772395.1_PDT001786531.1_genomic.fna	Salmonella_enterica	0.5198	172.065 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNYGJ010000010.1 Salmonella enterica strain PNUSAS357405 SAMN35819454-rid18531983.denovo.10, whole genome shotgun sequence	30041..30475	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNYGJ010000062.1 Salmonella enterica strain PNUSAS357405 SAMN35819454-rid18531983.guided.44, whole genome shotgun sequence	4024..4458	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032772415.1_PDT001786533.1_genomic.fna	Salmonella_enterica	0.5212	458.019 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYGH010000001.1 Salmonella enterica strain PNUSAS357639 SAMN35819153-rid18531993.denovo.01, whole genome shotgun sequence	838430..838867	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYGH010000022.1 Salmonella enterica strain PNUSAS357639 SAMN35819153-rid18531993.guided.14, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYGH010000009.1	150624..151494	99.196	871	0						
GCA_032772435.1_PDT001786530.1_genomic.fna	Salmonella_enterica	0.5199	269.892 KB	5	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNYGK010000001.1 Salmonella enterica strain PNUSAS357598 SAMN35819451-rid18518883.denovo.01, whole genome shotgun sequence	346964..347401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNYGK010000033.1 Salmonella enterica strain PNUSAS357598 SAMN35819451-rid18518883.guided.17, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYGK010000006.1	94147..95016	99.54	870	0						
GCA_032772475.1_PDT001786526.1_genomic.fna	Salmonella_enterica	0.5207	237.008 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYGL010000001.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12322815 SAMN35820286-rid18529543.denovo.01, whole genome shotgun sequence	477373..477810	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYGL010000041.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12322815 SAMN35820286-rid18529543.guided.30, whole genome shotgun sequence	20577..21014	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYGL010000007.1	140131..141000	99.195	870	0						
GCA_032772495.1_PDT001786519.1_genomic.fna	Salmonella_enterica	0.522	447.698 KB	3	aroC_2,dnaN_2,hemD_3,hisD_124*,purE_2,sucA_2,thrA_6	435*	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	99.8003992015968	100	hisD_124*	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYGO010000001.1 Salmonella enterica strain PNUSAS357643 SAMN35819150-rid18524783.denovo.01, whole genome shotgun sequence	750421..750858	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYGO010000033.1 Salmonella enterica strain PNUSAS357643 SAMN35819150-rid18524783.guided.24, whole genome shotgun sequence	4008..4445	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNYGO010000016.1 Salmonella enterica strain PNUSAS357643 SAMN35819150-rid18524783.denovo.16, whole genome shotgun sequence	6073..6606																																																						avrA	ABNYGO010000006.1	94166..95035	99.54	870	0						
GCA_032772515.1_PDT001786512.1_genomic.fna	Salmonella_enterica	0.5221	398.97 KB	5	aroC_43,dnaN_41,hemD_16,hisD_21,purE_34,sucA_13,thrA_4	699	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_21	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYGR010000005.1 Salmonella enterica strain PNUSAS357403 SAMN35819453-rid18523183.denovo.05, whole genome shotgun sequence	170082..170519	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYGR010000031.1 Salmonella enterica strain PNUSAS357403 SAMN35819453-rid18523183.guided.20, whole genome shotgun sequence	42390..42827	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032772535.1_PDT001786518.1_genomic.fna	Salmonella_enterica	0.5217	713.14 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	1	IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYGQ010000001.1 Salmonella enterica strain PNUSAS357404 SAMN35819452-rid18530943.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYGQ010000013.1 Salmonella enterica strain PNUSAS357404 SAMN35819452-rid18530943.denovo.13, whole genome shotgun sequence	2501..3337	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYGQ010000013.1 Salmonella enterica strain PNUSAS357404 SAMN35819452-rid18530943.denovo.13, whole genome shotgun sequence	3337..4140	Streptomycin	AF321551	aac(6')-Iaa	99.54	438/438	ABNYGQ010000035.1 Salmonella enterica strain PNUSAS357404 SAMN35819452-rid18530943.guided.23, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYGQ010000037.1 Salmonella enterica strain PNUSAS357404 SAMN35819452-rid18530943.guided.27, whole genome shotgun sequence	6673..7509	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYGQ010000037.1 Salmonella enterica strain PNUSAS357404 SAMN35819452-rid18530943.guided.27, whole genome shotgun sequence	5870..6673	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNYGQ010000013.1 Salmonella enterica strain PNUSAS357404 SAMN35819452-rid18530943.denovo.13, whole genome shotgun sequence	41439..42584	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNYGQ010000036.1 Salmonella enterica strain PNUSAS357404 SAMN35819452-rid18530943.guided.25, whole genome shotgun sequence	633..1778	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.27	1214/1215	ABNYGQ010000023.1 Salmonella enterica strain PNUSAS357404 SAMN35819452-rid18530943.denovo.28, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNYGQ010000038.1 Salmonella enterica strain PNUSAS357404 SAMN35819452-rid18530943.guided.30, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNYGQ010000013.1 Salmonella enterica strain PNUSAS357404 SAMN35819452-rid18530943.denovo.13, whole genome shotgun sequence	4201..5016	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNYGQ010000037.1 Salmonella enterica strain PNUSAS357404 SAMN35819452-rid18530943.guided.27, whole genome shotgun sequence	4994..5809	Sulfamethoxazole	AY034138	tet(A)	100	1240/1275	ABNYGQ010000013.1 Salmonella enterica strain PNUSAS357404 SAMN35819452-rid18530943.denovo.13, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNYGQ010000037.1 Salmonella enterica strain PNUSAS357404 SAMN35819452-rid18530943.guided.27, whole genome shotgun sequence	8770..10044	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncC	100	417 / 417	ABNYGQ010000012.1 Salmonella enterica strain PNUSAS357404 SAMN35819452-rid18530943.denovo.12, whole genome shotgun sequence	17493..17909																																																						avrA	ABNYGQ010000003.1	561934..562804	99.656	871	0						
GCA_032772555.1_PDT001786520.1_genomic.fna	Salmonella_enterica	0.5217	560.629 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYGN010000002.1 Salmonella enterica strain PNUSAS357599 SAMN35819457-rid18518873.denovo.02, whole genome shotgun sequence	145449..145886	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYGN010000027.1 Salmonella enterica strain PNUSAS357599 SAMN35819457-rid18518873.guided.10, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYGN010000003.1	553600..554471	99.541	872	0						
GCA_032772575.1_PDT001786515.1_genomic.fna	Salmonella_enterica	0.5224	74.288 KB	23	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYGP010000020.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.denovo.020, whole genome shotgun sequence	62362..62799	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYGP010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.denovo.061, whole genome shotgun sequence	22815..23606	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYGP010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.denovo.061, whole genome shotgun sequence	22815..23606	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYGP010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.denovo.113, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYGP010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.denovo.113, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNYGP010000150.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.guided.077, whole genome shotgun sequence	15429..15866	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYGP010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.guided.098, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYGP010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.guided.098, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYGP010000154.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.guided.112, whole genome shotgun sequence	1093..2118	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYGP010000154.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.guided.112, whole genome shotgun sequence	88..864	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNYGP010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.denovo.116, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNYGP010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.guided.127, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNYGP010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.denovo.106, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNYGP010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.guided.126, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNYGP010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.denovo.061, whole genome shotgun sequence	21471..22310	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYGP010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.guided.098, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYGP010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.denovo.061, whole genome shotgun sequence	7755..8954	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYGP010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.guided.129, whole genome shotgun sequence	993..2192	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYGP010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322776 SAMN35820074-rid18517393.denovo.097, whole genome shotgun sequence	5386..5945																																																						avrA	ABNYGP010000046.1	39349..40218	99.655	870	0						
GCA_032772595.1_PDT001786510.1_genomic.fna	Salmonella_enterica	0.5207	95.61 KB	19	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYGU010000018.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322800 SAMN35820361-rid18520213.denovo.018, whole genome shotgun sequence	83777..84214	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYGU010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322800 SAMN35820361-rid18520213.denovo.056, whole genome shotgun sequence	22824..23615	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYGU010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322800 SAMN35820361-rid18520213.denovo.056, whole genome shotgun sequence	22824..23615	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNYGU010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322800 SAMN35820361-rid18520213.guided.054, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYGU010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322800 SAMN35820361-rid18520213.guided.076, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYGU010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322800 SAMN35820361-rid18520213.guided.076, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNYGU010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322800 SAMN35820361-rid18520213.denovo.056, whole genome shotgun sequence	21480..22319	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYGU010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322800 SAMN35820361-rid18520213.guided.076, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYGU010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322800 SAMN35820361-rid18520213.denovo.056, whole genome shotgun sequence	7764..8963	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYGU010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322800 SAMN35820361-rid18520213.guided.080, whole genome shotgun sequence	4032..5231	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNYGU010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322800 SAMN35820361-rid18520213.denovo.083, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNYGU010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322800 SAMN35820361-rid18520213.guided.093, whole genome shotgun sequence	137..610	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYGU010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322800 SAMN35820361-rid18520213.denovo.061, whole genome shotgun sequence	14638..15197																																																						avrA	ABNYGU010000004.1	124387..125256	99.655	870	0						
GCA_032772615.1_PDT001786511.1_genomic.fna	Salmonella_enterica	0.5195	92.969 KB	15	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYGS010000001.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322799 SAMN35820364-rid18528013.denovo.001, whole genome shotgun sequence	230321..230758	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYGS010000106.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322799 SAMN35820364-rid18528013.guided.058, whole genome shotgun sequence	15975..16412	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNYGS010000009.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322799 SAMN35820364-rid18528013.denovo.009, whole genome shotgun sequence	18015..18437	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNYGS010000107.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322799 SAMN35820364-rid18528013.guided.060, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYGS010000008.1	95992..96861	99.195	870	0						
GCA_032772655.1_PDT001786505.1_genomic.fna	Salmonella_enterica	0.5218	377.05 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYGW010000004.1 Salmonella enterica strain PNUSAS357645 SAMN35819147-rid18517373.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYGW010000042.1 Salmonella enterica strain PNUSAS357645 SAMN35819147-rid18517373.guided.23, whole genome shotgun sequence	31741..32178	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNYGW010000021.1 Salmonella enterica strain PNUSAS357645 SAMN35819147-rid18517373.denovo.21, whole genome shotgun sequence	44733..45375	enterobacteriales	IncFII(S)	100	262 / 262	ABNYGW010000021.1 Salmonella enterica strain PNUSAS357645 SAMN35819147-rid18517373.denovo.21, whole genome shotgun sequence	29387..29648																																																avrA	ABNYGW010000001.1	446747..447615	100	869	0						
GCA_032772675.1_PDT001786502.1_genomic.fna	Salmonella_enterica	0.5215	278.184 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYGV010000003.1 Salmonella enterica strain PNUSAS357642 SAMN35819149-rid18528003.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYGV010000045.1 Salmonella enterica strain PNUSAS357642 SAMN35819149-rid18528003.guided.28, whole genome shotgun sequence	3277..3714	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNYGV010000021.1 Salmonella enterica strain PNUSAS357642 SAMN35819149-rid18528003.denovo.22, whole genome shotgun sequence	44730..45372	enterobacteriales	IncFII(S)	100	262 / 262	ABNYGV010000021.1 Salmonella enterica strain PNUSAS357642 SAMN35819149-rid18528003.denovo.22, whole genome shotgun sequence	29384..29645																																																avrA	ABNYGV010000001.1	446478..447346	100	869	0						
GCA_032772695.1_PDT001786500.1_genomic.fna	Salmonella_enterica	0.5189	173.214 KB	9	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aph(3')-Ia,blaCMY-2,blaCMY-2,fosA7,fosA7,floR,floR,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	1	IncC	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYGZ010000001.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.denovo.01, whole genome shotgun sequence	494943..495380	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYGZ010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.denovo.21, whole genome shotgun sequence	64544..65380	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYGZ010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.denovo.21, whole genome shotgun sequence	63741..64544	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNYGZ010000061.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.denovo.71, whole genome shotgun sequence	137..952	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	aac(6')-Iaa	97.95	438/438	ABNYGZ010000067.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.guided.30, whole genome shotgun sequence	24850..25287	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYGZ010000068.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.guided.39, whole genome shotgun sequence	23840..24676	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYGZ010000068.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.guided.39, whole genome shotgun sequence	23037..23840	Streptomycin	AF321551	aph(3')-Ia	99.88	816/816	ABNYGZ010000074.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.guided.69, whole genome shotgun sequence	114..929	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	aph(3')-Ia	100	816/816	ABNYGZ010000075.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.guided.70, whole genome shotgun sequence	114..929	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	blaCMY-2	100	1146/1146	ABNYGZ010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.denovo.21, whole genome shotgun sequence	33379..34524	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNYGZ010000069.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.guided.43, whole genome shotgun sequence	1909..3054	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	fosA7	97.16	423/423	ABNYGZ010000008.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.denovo.08, whole genome shotgun sequence	17991..18413	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNYGZ010000070.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.guided.47, whole genome shotgun sequence	16565..16987	Fosfomycin	LAPJ01000014	floR	98.27	1214/1215	ABNYGZ010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.denovo.21, whole genome shotgun sequence	68516..69729	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNYGZ010000072.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.guided.61, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNYGZ010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.denovo.21, whole genome shotgun sequence	62865..63680	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNYGZ010000068.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.guided.39, whole genome shotgun sequence	22161..22976	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNYGZ010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.denovo.21, whole genome shotgun sequence	66641..67915	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNYGZ010000073.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.guided.66, whole genome shotgun sequence	639..1913	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncC	100	417 / 417	ABNYGZ010000027.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322787 SAMN35820163-rid18520203.denovo.28, whole genome shotgun sequence	17507..17923																																																						avrA	ABNYGZ010000017.1	96023..96892	99.195	870	0						
GCA_032772715.1_PDT001786497.1_genomic.fna	Salmonella_enterica	0.5221	141.865 KB	12	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNYGY010000004.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322784 SAMN35820148-rid18521643.denovo.04, whole genome shotgun sequence	202631..203068	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNYGY010000064.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322784 SAMN35820148-rid18521643.guided.42, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNYGY010000063.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322784 SAMN35820148-rid18521643.denovo.66, whole genome shotgun sequence	107..237	enterobacteriales	ColpVC	98.96	193 / 193	ABNYGY010000055.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322784 SAMN35820148-rid18521643.denovo.58, whole genome shotgun sequence	519..711		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNYGY010000033.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322784 SAMN35820148-rid18521643.denovo.33, whole genome shotgun sequence	2016..2157																																									avrA	ABNYGY010000006.1	145444..146313	99.425	870	0						
GCA_032772735.1_PDT001786496.1_genomic.fna	Salmonella_enterica	0.5202	406.451 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYHA010000001.1 Salmonella enterica strain PNUSAS357638 SAMN35819154-rid18530913.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYHA010000029.1 Salmonella enterica strain PNUSAS357638 SAMN35819154-rid18530913.guided.19, whole genome shotgun sequence	3999..4436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYHA010000019.1 Salmonella enterica strain PNUSAS357638 SAMN35819154-rid18530913.denovo.21, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNYHA010000020.1 Salmonella enterica strain PNUSAS357638 SAMN35819154-rid18530913.denovo.23, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	98.93	374 / 374	ABNYHA010000015.1 Salmonella enterica strain PNUSAS357638 SAMN35819154-rid18530913.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNYHA010000002.1	553690..554559	99.54	870	0						
GCA_032772775.1_PDT001786495.1_genomic.fna	Salmonella_enterica	0.5213	307.168 KB	6	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54*,sucA_63,thrA_57	150*	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	99.749373433584	100	purE_54*	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNYHB010000001.1 Salmonella enterica strain PNUSAS357640 SAMN35819151-rid18518853.denovo.01, whole genome shotgun sequence	346929..347366	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNYHB010000034.1 Salmonella enterica strain PNUSAS357640 SAMN35819151-rid18518853.guided.23, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYHB010000007.1	150992..151861	99.54	870	0						
GCA_032772795.1_PDT001786494.1_genomic.fna	Salmonella_enterica	0.5217	363.129 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYHC010000001.1 Salmonella enterica strain PNUSAS357644 SAMN35819148-rid18526393.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYHC010000035.1 Salmonella enterica strain PNUSAS357644 SAMN35819148-rid18526393.guided.21, whole genome shotgun sequence	8871..9308	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNYHC010000022.1 Salmonella enterica strain PNUSAS357644 SAMN35819148-rid18526393.denovo.25, whole genome shotgun sequence	1506..1636	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNYHC010000025.1 Salmonella enterica strain PNUSAS357644 SAMN35819148-rid18526393.denovo.28, whole genome shotgun sequence	2552..2682		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNYHC010000013.1 Salmonella enterica strain PNUSAS357644 SAMN35819148-rid18526393.denovo.13, whole genome shotgun sequence	76926..77067																																									avrA	ABNYHC010000008.1	39408..40277	98.966	870	0						
GCA_032772815.1_PDT001786488.1_genomic.fna	Salmonella_enterica	0.5221	75.591 KB	20	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYHD010000036.1 Salmonella enterica strain PNUSAS357620 SAMN35819014-rid18520173.denovo.036, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYHD010000111.1 Salmonella enterica strain PNUSAS357620 SAMN35819014-rid18520173.guided.056, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	ABNYHD010000042.1 Salmonella enterica strain PNUSAS357620 SAMN35819014-rid18520173.denovo.042, whole genome shotgun sequence	26922..27181																																																																	
GCA_032772825.1_PDT001786491.1_genomic.fna	Salmonella_enterica	0.52	127.743 KB	13	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYHE010000002.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322790 SAMN35820158-rid18529513.denovo.02, whole genome shotgun sequence	47353..47790	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYHE010000086.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322790 SAMN35820158-rid18529513.guided.42, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNYHE010000049.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322790 SAMN35820158-rid18529513.denovo.51, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABNYHE010000034.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322790 SAMN35820158-rid18529513.denovo.34, whole genome shotgun sequence	5132..5628																																																avrA	ABNYHE010000007.1	174555..175424	98.966	870	0						
GCA_032772855.1_PDT001786478.1_genomic.fna	Salmonella_enterica	0.5215	82.293 KB	20	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNYHG010000016.1 Salmonella enterica strain PNUSAS357618 SAMN35819016-rid18520163.denovo.016, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNYHG010000116.1 Salmonella enterica strain PNUSAS357618 SAMN35819016-rid18520163.guided.085, whole genome shotgun sequence	7342..7776	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032772895.1_PDT001786469.1_genomic.fna	Salmonella_enterica	0.5145	133.159 KB	11	aroC_364,dnaN_25,hemD_29,hisD_263,purE_48,sucA_178,thrA_371	4438	53:z4,z24:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_364	dnaN	100	100	dnaN_25	hemD	100	100	hemD_29	hisD	100	100	hisD_263	purE	100	100	purE_48	sucA	100	100	sucA_178	thrA	100	100	thrA_371	53	z4,z24	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 53:z4,z24:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032772915.1_PDT001786466.1_genomic.fna	Salmonella_enterica	0.5226	243.209 KB	7	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYHJ010000002.1 Salmonella enterica strain PNUSAS357627 SAMN35819012-rid18530893.denovo.02, whole genome shotgun sequence	170344..170781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYHJ010000040.1 Salmonella enterica strain PNUSAS357627 SAMN35819012-rid18530893.guided.31, whole genome shotgun sequence	3994..4431	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032772975.1_PDT001786460.1_genomic.fna	Salmonella_enterica	0.5209	389.18 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(6)-Id,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQGRS010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.denovo.06, whole genome shotgun sequence	127654..128091	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQGRS010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.denovo.20, whole genome shotgun sequence	28247..29083	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQGRS010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.denovo.20, whole genome shotgun sequence	27444..28247	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	DAQGRS010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.guided.25, whole genome shotgun sequence	5771..6208	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	804/804	DAQGRS010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.guided.26, whole genome shotgun sequence	11724..12527	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQGRS010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.guided.34, whole genome shotgun sequence	436..1272	Streptomycin	M28829	blaCMY-2	100	1146/1146	DAQGRS010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.denovo.33, whole genome shotgun sequence	116..1261	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	DAQGRS010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.guided.32, whole genome shotgun sequence	157..1302	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	DAQGRS010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.denovo.20, whole genome shotgun sequence	32219..33432	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	DAQGRS010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.guided.29, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	DAQGRS010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.denovo.20, whole genome shotgun sequence	26568..27383	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQGRS010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.guided.26, whole genome shotgun sequence	10848..11663	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	DAQGRS010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.denovo.20, whole genome shotgun sequence	30344..31618	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	DAQGRS010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.guided.30, whole genome shotgun sequence	877..2151	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1275/1275	DAQGRS010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.guided.31, whole genome shotgun sequence	877..2151	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																			enterobacteriales	IncC	100	417 / 417	DAQGRS010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.denovo.19, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQGRS010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.denovo.16, whole genome shotgun sequence	29336..29595		enterobacteriales	IncX1	98.66	374 / 374	DAQGRS010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf3feces SAMN35819045-rid18527943.denovo.16, whole genome shotgun sequence	65190..65563																																									avrA	DAQGRS010000007.1	173548..174416	99.54	870	0						
GCA_032772995.1_PDT001786458.1_genomic.fna	Salmonella_enterica	0.5209	390.816 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQGRU010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.denovo.06, whole genome shotgun sequence	129290..129727	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQGRU010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.denovo.19, whole genome shotgun sequence	28247..29083	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQGRU010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.denovo.19, whole genome shotgun sequence	27444..28247	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	DAQGRU010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.guided.23, whole genome shotgun sequence	15103..15540	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQGRU010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.guided.28, whole genome shotgun sequence	2080..2916	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQGRU010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.guided.28, whole genome shotgun sequence	1277..2080	Streptomycin	AF321551	blaCMY-2	100	1146/1146	DAQGRU010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.denovo.30, whole genome shotgun sequence	116..1261	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	DAQGRU010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.guided.29, whole genome shotgun sequence	157..1302	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	DAQGRU010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.denovo.19, whole genome shotgun sequence	32219..33432	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	DAQGRU010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	DAQGRU010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.denovo.19, whole genome shotgun sequence	26568..27383	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQGRU010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.guided.28, whole genome shotgun sequence	401..1216	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	DAQGRU010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.denovo.19, whole genome shotgun sequence	30344..31618	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	DAQGRU010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.guided.31, whole genome shotgun sequence	190..1464	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	DAQGRU010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.denovo.18, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQGRU010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.denovo.15, whole genome shotgun sequence	29336..29595		enterobacteriales	IncX1	98.66	374 / 374	DAQGRU010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf1nasal SAMN35819043-rid18521613.denovo.15, whole genome shotgun sequence	65190..65563																																									avrA	DAQGRU010000008.1	173548..174416	99.54	870	0						
GCA_032773015.1_PDT001786459.1_genomic.fna	Salmonella_enterica	0.5209	389.18 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQGRR010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.denovo.06, whole genome shotgun sequence	127654..128091	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQGRR010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.denovo.20, whole genome shotgun sequence	28247..29083	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQGRR010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.denovo.20, whole genome shotgun sequence	27444..28247	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQGRR010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.guided.27, whole genome shotgun sequence	1165..2001	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQGRR010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.guided.27, whole genome shotgun sequence	362..1165	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	DAQGRR010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.guided.29, whole genome shotgun sequence	101..538	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	757/804	DAQGRR010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.guided.32, whole genome shotgun sequence	895..1651	Streptomycin	AF321551	blaCMY-2	100	1146/1146	DAQGRR010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.denovo.31, whole genome shotgun sequence	116..1261	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	DAQGRR010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.guided.30, whole genome shotgun sequence	157..1302	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	DAQGRR010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.denovo.20, whole genome shotgun sequence	32219..33432	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	DAQGRR010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.guided.28, whole genome shotgun sequence	1196..2409	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	DAQGRR010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.denovo.20, whole genome shotgun sequence	26568..27383	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQGRR010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.guided.32, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	DAQGRR010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.denovo.20, whole genome shotgun sequence	30344..31618	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	DAQGRR010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.guided.27, whole genome shotgun sequence	3262..4536	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																			enterobacteriales	IncC	100	417 / 417	DAQGRR010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.denovo.19, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQGRR010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.denovo.15, whole genome shotgun sequence	29336..29595		enterobacteriales	IncX1	98.66	374 / 374	DAQGRR010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmLcalf2feces SAMN35819044-rid18524733.denovo.15, whole genome shotgun sequence	65190..65563																																									avrA	DAQGRR010000007.1	173548..174416	99.54	870	0						
GCA_032773035.1_PDT001786457.1_genomic.fna	Salmonella_enterica	0.521	401.74 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQGRT010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.denovo.04, whole genome shotgun sequence	159455..159892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQGRT010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.denovo.19, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQGRT010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.denovo.19, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQGRT010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.guided.22, whole genome shotgun sequence	27002..27838	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQGRT010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.guided.22, whole genome shotgun sequence	26199..27002	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	DAQGRT010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.guided.30, whole genome shotgun sequence	906..1343	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	DAQGRT010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.denovo.19, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	DAQGRT010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.guided.27, whole genome shotgun sequence	3002..4147	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	DAQGRT010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.denovo.19, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	DAQGRT010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.guided.29, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	DAQGRT010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.denovo.19, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQGRT010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.guided.22, whole genome shotgun sequence	25323..26138	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	DAQGRT010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.denovo.19, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	DAQGRT010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.guided.22, whole genome shotgun sequence	29099..30373	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	DAQGRT010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.denovo.20, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQGRT010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.denovo.16, whole genome shotgun sequence	29345..29604		enterobacteriales	IncX1	98.66	374 / 374	DAQGRT010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmMenv1 SAMN35819042-rid18523133.denovo.16, whole genome shotgun sequence	65199..65572																																									avrA	DAQGRT010000008.1	173549..174417	99.54	870	0						
GCA_032773055.1_PDT001786456.1_genomic.fna	Salmonella_enterica	0.521	401.74 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQGRV010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.denovo.04, whole genome shotgun sequence	159455..159892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQGRV010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.denovo.18, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQGRV010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.denovo.18, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQGRV010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.guided.20, whole genome shotgun sequence	190..1026	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQGRV010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.guided.20, whole genome shotgun sequence	1026..1829	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	DAQGRV010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.guided.26, whole genome shotgun sequence	3018..3455	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	DAQGRV010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.denovo.18, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	DAQGRV010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.guided.20, whole genome shotgun sequence	31046..32191	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	DAQGRV010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.denovo.18, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	DAQGRV010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.guided.28, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	DAQGRV010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.denovo.18, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQGRV010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.guided.20, whole genome shotgun sequence	1890..2705	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	DAQGRV010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.denovo.18, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	DAQGRV010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.guided.29, whole genome shotgun sequence	1071..2345	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	DAQGRV010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.denovo.19, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQGRV010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.denovo.15, whole genome shotgun sequence	29345..29604		enterobacteriales	IncX1	98.66	374 / 374	DAQGRV010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Dublin strain farmDcalf2blood SAMN35819041-rid18531933.denovo.15, whole genome shotgun sequence	65199..65572																																									avrA	DAQGRV010000007.1	173549..174417	99.54	870	0						
GCA_032773075.1_PDT001786448.1_genomic.fna	Salmonella_enterica	0.5202	180.507 KB	9	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNYHL010000001.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322809 SAMN35820208-rid18521603.denovo.01, whole genome shotgun sequence	132888..133325	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNYHL010000088.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322809 SAMN35820208-rid18521603.guided.38, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNYHL010000046.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322809 SAMN35820208-rid18521603.denovo.49, whole genome shotgun sequence	2209..2339	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNYHL010000049.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322809 SAMN35820208-rid18521603.denovo.52, whole genome shotgun sequence	186..316		enterobacteriales	Col440I	94.59	111 / 114	ABNYHL010000044.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322809 SAMN35820208-rid18521603.denovo.47, whole genome shotgun sequence	3175..3285																																									avrA	ABNYHL010000002.1	95196..96065	99.425	870	0						
GCA_032773095.1_PDT001786447.1_genomic.fna	Salmonella_enterica	0.5193	215.516 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYHM010000007.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322807 SAMN35820206-rid18524713.denovo.07, whole genome shotgun sequence	80602..81039	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYHM010000037.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322807 SAMN35820206-rid18524713.denovo.39, whole genome shotgun sequence	6683..7519	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYHM010000037.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322807 SAMN35820206-rid18524713.denovo.39, whole genome shotgun sequence	7519..8322	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNYHM010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322807 SAMN35820206-rid18524713.guided.30, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYHM010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322807 SAMN35820206-rid18524713.guided.43, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYHM010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322807 SAMN35820206-rid18524713.guided.43, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNYHM010000038.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322807 SAMN35820206-rid18524713.denovo.42, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYHM010000056.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322807 SAMN35820206-rid18524713.guided.41, whole genome shotgun sequence	4116..5321	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNYHM010000027.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322807 SAMN35820206-rid18524713.denovo.27, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNYHM010000037.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322807 SAMN35820206-rid18524713.denovo.39, whole genome shotgun sequence	5799..6060		enterobacteriales	IncFII	96.95	262 / 261	ABNYHM010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322807 SAMN35820206-rid18524713.guided.43, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABNYHM010000035.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322807 SAMN35820206-rid18524713.denovo.37, whole genome shotgun sequence	2153..2525																																		avrA	ABNYHM010000005.1	39484..40353	99.655	870	0						
GCA_032773115.1_PDT001786446.1_genomic.fna	Salmonella_enterica	0.5215	181.281 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYHN010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322802 SAMN35820404-rid18531923.denovo.01, whole genome shotgun sequence	477880..478317	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYHN010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322802 SAMN35820404-rid18531923.denovo.33, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYHN010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322802 SAMN35820404-rid18531923.denovo.33, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNYHN010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322802 SAMN35820404-rid18531923.guided.34, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYHN010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322802 SAMN35820404-rid18531923.guided.53, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYHN010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322802 SAMN35820404-rid18531923.guided.53, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNYHN010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322802 SAMN35820404-rid18531923.denovo.33, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYHN010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322802 SAMN35820404-rid18531923.guided.53, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYHN010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322802 SAMN35820404-rid18531923.denovo.33, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYHN010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322802 SAMN35820404-rid18531923.guided.36, whole genome shotgun sequence	7833..9032	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYHN010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322802 SAMN35820404-rid18531923.denovo.40, whole genome shotgun sequence	9109..9668																																																						avrA	ABNYHN010000006.1	149828..150697	99.655	870	0						
GCA_032773135.1_PDT001786445.1_genomic.fna	Salmonella_enterica	0.5227	108.249 KB	12	aroC_42,dnaN_169,hemD_48,hisD_16,purE_12,sucA_23,thrA_4	2041	11:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_169	hemD	100	100	hemD_48	hisD	100	100	hisD_16	purE	100	100	purE_12	sucA	100	100	sucA_23	thrA	100	100	thrA_4	11	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Abaetetuba		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNYHO010000001.1 Salmonella enterica subsp. enterica serovar Abaetetuba strain FSIS12322793 SAMN35820351-rid18523113.denovo.01, whole genome shotgun sequence	37926..38363	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNYHO010000087.1 Salmonella enterica subsp. enterica serovar Abaetetuba strain FSIS12322793 SAMN35820351-rid18523113.guided.51, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNYHO010000023.1 Salmonella enterica subsp. enterica serovar Abaetetuba strain FSIS12322793 SAMN35820351-rid18523113.denovo.23, whole genome shotgun sequence	69797..69938																																																						avrA	ABNYHO010000011.1	105523..106392	99.54	870	0						
GCA_032773155.1_PDT001786444.1_genomic.fna	Salmonella_enterica	0.5199	62.183 KB	25	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYHP010000013.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322804 SAMN35820403-rid18523103.denovo.013, whole genome shotgun sequence	12472..12909	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYHP010000183.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322804 SAMN35820403-rid18523103.guided.060, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNYHP010000121.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322804 SAMN35820403-rid18523103.denovo.124, whole genome shotgun sequence	426..556	enterobacteriales	IncHI2A	99.52	630 / 630	ABNYHP010000135.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322804 SAMN35820403-rid18523103.denovo.138, whole genome shotgun sequence	77..706		enterobacteriales	IncX1	100	373 / 373	ABNYHP010000091.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322804 SAMN35820403-rid18523103.denovo.093, whole genome shotgun sequence	2153..2525																																									avrA	ABNYHP010000034.1	39484..40353	99.655	870	0						
GCA_032773175.1_PDT001786442.1_genomic.fna	Salmonella_enterica	0.5184	97.312 KB	15	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYHR010000014.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322796 SAMN35820349-rid18523093.denovo.014, whole genome shotgun sequence	81214..81651	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYHR010000044.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322796 SAMN35820349-rid18523093.denovo.044, whole genome shotgun sequence	4338..5174	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYHR010000044.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322796 SAMN35820349-rid18523093.denovo.044, whole genome shotgun sequence	3536..4338	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYHR010000044.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322796 SAMN35820349-rid18523093.denovo.044, whole genome shotgun sequence	3535..4338	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYHR010000044.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322796 SAMN35820349-rid18523093.denovo.044, whole genome shotgun sequence	3535..4338	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYHR010000044.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322796 SAMN35820349-rid18523093.denovo.044, whole genome shotgun sequence	3535..4338	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNYHR010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322796 SAMN35820349-rid18523093.guided.058, whole genome shotgun sequence	4379..5215	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYHR010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322796 SAMN35820349-rid18523093.guided.058, whole genome shotgun sequence	3577..4379	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYHR010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322796 SAMN35820349-rid18523093.guided.058, whole genome shotgun sequence	3576..4379	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYHR010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322796 SAMN35820349-rid18523093.guided.058, whole genome shotgun sequence	3576..4379	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYHR010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322796 SAMN35820349-rid18523093.guided.058, whole genome shotgun sequence	3576..4379	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNYHR010000143.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322796 SAMN35820349-rid18523093.guided.059, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	291 / 327	ABNYHR010000087.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322796 SAMN35820349-rid18523093.denovo.091, whole genome shotgun sequence	1..291	enterobacteriales	IncHI2A	99.52	630 / 630	ABNYHR010000064.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322796 SAMN35820349-rid18523093.denovo.068, whole genome shotgun sequence	728..1357		enterobacteriales	IncX1	100	373 / 373	ABNYHR010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322796 SAMN35820349-rid18523093.denovo.102, whole genome shotgun sequence	2153..2525																																									avrA	ABNYHR010000037.1	39484..40353	99.655	870	0						
GCA_032773195.1_PDT001786443.1_genomic.fna	Salmonella_enterica	0.5224	71.011 KB	23	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYHQ010000002.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322801 SAMN35820362-rid18518783.denovo.002, whole genome shotgun sequence	175786..176223	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYHQ010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322801 SAMN35820362-rid18518783.denovo.063, whole genome shotgun sequence	22911..23702	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYHQ010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322801 SAMN35820362-rid18518783.denovo.063, whole genome shotgun sequence	22911..23702	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNYHQ010000144.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322801 SAMN35820362-rid18518783.guided.064, whole genome shotgun sequence	22509..22946	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYHQ010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322801 SAMN35820362-rid18518783.guided.084, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYHQ010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322801 SAMN35820362-rid18518783.guided.084, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNYHQ010000103.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322801 SAMN35820362-rid18518783.denovo.109, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNYHQ010000149.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322801 SAMN35820362-rid18518783.guided.111, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNYHQ010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322801 SAMN35820362-rid18518783.denovo.114, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABNYHQ010000150.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322801 SAMN35820362-rid18518783.guided.129, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABNYHQ010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322801 SAMN35820362-rid18518783.denovo.063, whole genome shotgun sequence	21567..22406	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYHQ010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322801 SAMN35820362-rid18518783.guided.084, whole genome shotgun sequence	2393..3232	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYHQ010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322801 SAMN35820362-rid18518783.denovo.063, whole genome shotgun sequence	7851..9050	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYHQ010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322801 SAMN35820362-rid18518783.guided.094, whole genome shotgun sequence	20..1219	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNYHQ010000147.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322801 SAMN35820362-rid18518783.guided.095, whole genome shotgun sequence	20..1219	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																															gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYHQ010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322801 SAMN35820362-rid18518783.denovo.079, whole genome shotgun sequence	14634..15193																																																						avrA	ABNYHQ010000009.1	105543..106412	99.655	870	0						
GCA_032773215.1_PDT001786439.1_genomic.fna	Salmonella_enterica	0.5224	59.134 KB	24	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYHU010000019.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322797 SAMN35820350-rid18526333.denovo.019, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYHU010000144.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322797 SAMN35820350-rid18526333.guided.079, whole genome shotgun sequence	9552..9989	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNYHU010000077.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322797 SAMN35820350-rid18526333.denovo.078, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABNYHU010000054.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322797 SAMN35820350-rid18526333.denovo.055, whole genome shotgun sequence	29372..29633																																																avrA	ABNYHU010000014.1	43819..44687	100	869	0						
GCA_032773235.1_PDT001786440.1_genomic.fna	Salmonella_enterica	0.5215	141.264 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYHS010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322794 SAMN35820347-rid18521593.denovo.01, whole genome shotgun sequence	374336..374773	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYHS010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322794 SAMN35820347-rid18521593.denovo.53, whole genome shotgun sequence	11958..12749	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYHS010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322794 SAMN35820347-rid18521593.denovo.53, whole genome shotgun sequence	11958..12749	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNYHS010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322794 SAMN35820347-rid18521593.guided.48, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYHS010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322794 SAMN35820347-rid18521593.guided.61, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYHS010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322794 SAMN35820347-rid18521593.guided.61, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNYHS010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322794 SAMN35820347-rid18521593.denovo.53, whole genome shotgun sequence	10614..11453	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYHS010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322794 SAMN35820347-rid18521593.guided.61, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYHS010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322794 SAMN35820347-rid18521593.denovo.65, whole genome shotgun sequence	1879..3078	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYHS010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322794 SAMN35820347-rid18521593.guided.64, whole genome shotgun sequence	1914..3113	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYHS010000030.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322794 SAMN35820347-rid18521593.denovo.30, whole genome shotgun sequence	37023..37582																																																						avrA	ABNYHS010000009.1	2250..3119	99.655	870	0						
GCA_032773275.1_PDT001786436.1_genomic.fna	Salmonella_enterica	0.5214	168.191 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYHX010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322798 SAMN35820363-rid18529473.denovo.01, whole genome shotgun sequence	192965..193402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYHX010000058.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322798 SAMN35820363-rid18529473.guided.38, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYHX010000039.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322798 SAMN35820363-rid18529473.denovo.42, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNYHX010000041.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322798 SAMN35820363-rid18529473.denovo.44, whole genome shotgun sequence	3413..3674																																																avrA	ABNYHX010000002.1	175197..176066	99.54	870	0						
GCA_032773295.1_PDT001786433.1_genomic.fna	Salmonella_enterica	0.5217	165.807 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYHZ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYHZ010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.denovo.38, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYHZ010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.denovo.38, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYHZ010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.denovo.59, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYHZ010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.denovo.59, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNYHZ010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.guided.36, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYHZ010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.guided.48, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYHZ010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.guided.48, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYHZ010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.guided.58, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYHZ010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.guided.58, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNYHZ010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.denovo.65, whole genome shotgun sequence	853..1728	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNYHZ010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.guided.67, whole genome shotgun sequence	569..1444	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNYHZ010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.denovo.38, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYHZ010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.guided.48, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYHZ010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.denovo.38, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYHZ010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.guided.47, whole genome shotgun sequence	1913..3112	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYHZ010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322803 SAMN35820405-rid18520143.denovo.41, whole genome shotgun sequence	9109..9668																																																						avrA	ABNYHZ010000007.1	95321..96190	99.655	870	0						
GCA_032773335.1_PDT001786431.1_genomic.fna	Salmonella_enterica	0.5211	212.758 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYHY010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322810 SAMN35820209-rid18530863.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYHY010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322810 SAMN35820209-rid18530863.guided.19, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYHY010000002.1	149828..150697	99.655	870	0						
GCA_032773355.1_PDT001786430.1_genomic.fna	Salmonella_enterica	0.5202	234.279 KB	7	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYIA010000002.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12322811 SAMN35820210-rid18521583.denovo.02, whole genome shotgun sequence	180435..180872	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYIA010000052.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12322811 SAMN35820210-rid18521583.guided.30, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNYIA010000038.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12322811 SAMN35820210-rid18521583.denovo.41, whole genome shotgun sequence	186..316																																																						avrA	ABNYIA010000004.1	93947..94816	98.966	870	0						
GCA_032773375.1_PDT001786428.1_genomic.fna	Salmonella_enterica	0.5199	194.254 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYIB010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYIB010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.denovo.44, whole genome shotgun sequence	8009..8800	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYIB010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.denovo.44, whole genome shotgun sequence	8009..8800	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYIB010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.denovo.55, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYIB010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.denovo.55, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNYIB010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.guided.40, whole genome shotgun sequence	13435..13872	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYIB010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.guided.49, whole genome shotgun sequence	1246..2037	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYIB010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.guided.49, whole genome shotgun sequence	1246..2037	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYIB010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.guided.61, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYIB010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.guided.61, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNYIB010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.denovo.47, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNYIB010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.guided.54, whole genome shotgun sequence	925..2138	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNYIB010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.denovo.44, whole genome shotgun sequence	6665..7504	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYIB010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.guided.49, whole genome shotgun sequence	2542..3381	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYIB010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.denovo.38, whole genome shotgun sequence	961..2160	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYIB010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.guided.52, whole genome shotgun sequence	992..2191	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNYIB010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.denovo.45, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNYIB010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.guided.50, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYIB010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322808 SAMN35820207-rid18517343.denovo.27, whole genome shotgun sequence	32587..33146																																																						avrA	ABNYIB010000004.1	149893..150762	99.655	870	0						
GCA_032773395.1_PDT001786427.1_genomic.fna	Salmonella_enterica	0.5221	230.832 KB	6	aroC_188,dnaN_112,hemD_121,hisD_14,purE_176,sucA_183,thrA_1	590	3,10:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_188	dnaN	100	100	dnaN_112	hemD	100	100	hemD_121	hisD	100	100	hisD_14	purE	100	100	purE_176	sucA	100	100	sucA_183	thrA	100	100	thrA_1	3,10	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Amsterdam		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNYIC010000001.1 Salmonella enterica strain PNUSAS357624 SAMN35819018-rid18526313.denovo.01, whole genome shotgun sequence	720998..721435	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNYIC010000039.1 Salmonella enterica strain PNUSAS357624 SAMN35819018-rid18526313.guided.33, whole genome shotgun sequence	6026..6463	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYIC010000008.1	124829..125698	98.851	870	0						
GCA_032773415.1_PDT001786426.1_genomic.fna	Salmonella_enterica	0.5215	228.457 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYID010000001.1 Salmonella enterica strain PNUSAS357626 SAMN35819010-rid18527923.denovo.01, whole genome shotgun sequence	73464..73901	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYID010000046.1 Salmonella enterica strain PNUSAS357626 SAMN35819010-rid18527923.guided.33, whole genome shotgun sequence	9870..10307	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYID010000030.1 Salmonella enterica strain PNUSAS357626 SAMN35819010-rid18527923.denovo.31, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNYID010000033.1 Salmonella enterica strain PNUSAS357626 SAMN35819010-rid18527923.denovo.36, whole genome shotgun sequence	3395..3656																																																avrA	ABNYID010000006.1	174916..175785	99.54	870	0						
GCA_032773435.1_PDT001786437.1_genomic.fna	Salmonella_enterica	0.5197	136.4 KB	12	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	5	Col(pHAD28),Col440I,ColRNAI,IncFII(pCTU2),pESA2	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYHV010000004.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12322812 SAMN35820287-rid18526323.denovo.04, whole genome shotgun sequence	230358..230795	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYHV010000082.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12322812 SAMN35820287-rid18526323.guided.41, whole genome shotgun sequence	14246..14683	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNYHV010000059.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12322812 SAMN35820287-rid18526323.denovo.62, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	94.59	111 / 114	ABNYHV010000058.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12322812 SAMN35820287-rid18526323.denovo.61, whole genome shotgun sequence	3175..3285		enterobacteriales	ColRNAI	90.08	131 / 130	ABNYHV010000056.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12322812 SAMN35820287-rid18526323.denovo.59, whole genome shotgun sequence	3981..4111		enterobacteriales	IncFII(pCTU2)	97.23	577 / 577	ABNYHV010000039.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12322812 SAMN35820287-rid18526323.denovo.39, whole genome shotgun sequence	6055..6631		enterobacteriales	pESA2	98.4	750 / 750	ABNYHV010000039.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12322812 SAMN35820287-rid18526323.denovo.39, whole genome shotgun sequence	22450..23199																											avrA	ABNYHV010000034.1	39350..40219	99.54	870	0						
GCA_032773455.1_PDT001786425.1_genomic.fna	Salmonella_enterica	0.5199	219.127 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYIE010000001.1 Salmonella enterica strain PNUSAS357621 SAMN35819013-rid18527913.denovo.01, whole genome shotgun sequence	382567..383004	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYIE010000049.1 Salmonella enterica strain PNUSAS357621 SAMN35819013-rid18527913.guided.28, whole genome shotgun sequence	9965..10402	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYIE010000032.1 Salmonella enterica strain PNUSAS357621 SAMN35819013-rid18527913.denovo.33, whole genome shotgun sequence	18147..18789	enterobacteriales	IncFII(S)	100	262 / 262	ABNYIE010000032.1 Salmonella enterica strain PNUSAS357621 SAMN35819013-rid18527913.denovo.33, whole genome shotgun sequence	3446..3707		enterobacteriales	IncX1	98.67	377 / 377	ABNYIE010000023.1 Salmonella enterica strain PNUSAS357621 SAMN35819013-rid18527913.denovo.23, whole genome shotgun sequence	6390..6766																																									avrA	ABNYIE010000005.1	141075..141944	99.54	870	0						
GCA_032773475.1_PDT001786421.1_genomic.fna	Salmonella_enterica	0.5219	131.492 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYIG010000001.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.denovo.01, whole genome shotgun sequence	382106..382543	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYIG010000038.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.denovo.39, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYIG010000038.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.denovo.39, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYIG010000061.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.denovo.67, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYIG010000061.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.denovo.67, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNYIG010000079.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.guided.43, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYIG010000081.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.guided.59, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYIG010000081.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.guided.59, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYIG010000084.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.guided.75, whole genome shotgun sequence	242..1267	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYIG010000085.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.guided.80, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNYIG010000057.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.denovo.62, whole genome shotgun sequence	3320..4533	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNYIG010000083.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.guided.64, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNYIG010000038.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.denovo.39, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYIG010000081.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.guided.59, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYIG010000038.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.denovo.39, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYIG010000082.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.guided.60, whole genome shotgun sequence	5837..7036	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYIG010000044.1 Salmonella enterica strain PNUSAS357625 SAMN35819015-rid18530853.denovo.46, whole genome shotgun sequence	9109..9668																																																						avrA	ABNYIG010000004.1	124371..125240	99.655	870	0						
GCA_032773495.1_PDT001786424.1_genomic.fna	Salmonella_enterica	0.5206	245.767 KB	7	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYIF010000002.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12322816 SAMN35820284-rid18524693.denovo.02, whole genome shotgun sequence	225004..225441	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYIF010000039.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12322816 SAMN35820284-rid18524693.guided.28, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYIF010000011.1	140131..141000	99.195	870	0						
GCA_032773515.1_PDT001786422.1_genomic.fna	Salmonella_enterica	0.521	163.842 KB	7	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYIH010000001.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12322814 SAMN35820285-rid18524683.denovo.01, whole genome shotgun sequence	477443..477880	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYIH010000049.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12322814 SAMN35820285-rid18524683.guided.34, whole genome shotgun sequence	19815..20252	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYIH010000008.1	114618..115487	99.195	870	0						
GCA_032773535.1_PDT001786420.1_genomic.fna	Salmonella_enterica	0.5202	116.304 KB	16	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYII010000025.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12322813 SAMN35820288-rid18521573.denovo.25, whole genome shotgun sequence	56751..57188	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYII010000088.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12322813 SAMN35820288-rid18521573.guided.56, whole genome shotgun sequence	10050..10487	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNYII010000063.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12322813 SAMN35820288-rid18521573.denovo.66, whole genome shotgun sequence	557..687																																																						avrA	ABNYII010000044.1	39350..40219	99.54	870	0						
GCA_032773555.1_PDT001786415.1_genomic.fna	Salmonella_enterica	0.5218	268.048 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYIJ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322805 SAMN35820201-rid18527903.denovo.01, whole genome shotgun sequence	573979..574416	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYIJ010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322805 SAMN35820201-rid18527903.denovo.28, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYIJ010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322805 SAMN35820201-rid18527903.denovo.28, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNYIJ010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322805 SAMN35820201-rid18527903.guided.32, whole genome shotgun sequence	14129..14566	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYIJ010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322805 SAMN35820201-rid18527903.guided.43, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYIJ010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322805 SAMN35820201-rid18527903.guided.43, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNYIJ010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322805 SAMN35820201-rid18527903.denovo.28, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYIJ010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322805 SAMN35820201-rid18527903.guided.43, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYIJ010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322805 SAMN35820201-rid18527903.denovo.28, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYIJ010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322805 SAMN35820201-rid18527903.guided.33, whole genome shotgun sequence	1915..3114	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYIJ010000013.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322805 SAMN35820201-rid18527903.denovo.13, whole genome shotgun sequence	77542..78101																																																						avrA	ABNYIJ010000003.1	94090..94959	99.655	870	0						
GCA_032773575.1_PDT001786408.1_genomic.fna	Salmonella_enterica	0.5227	61.849 KB	25	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYIL010000017.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322778 SAMN35820076-rid18517333.denovo.017, whole genome shotgun sequence	20249..20686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYIL010000167.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322778 SAMN35820076-rid18517333.guided.065, whole genome shotgun sequence	14166..14603	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYIL010000103.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322778 SAMN35820076-rid18517333.denovo.106, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNYIL010000107.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322778 SAMN35820076-rid18517333.denovo.110, whole genome shotgun sequence	3413..3674																																																avrA	ABNYIL010000008.1	99010..99879	99.54	870	0						
GCA_032773595.1_PDT001786414.1_genomic.fna	Salmonella_enterica	0.5229	94.984 KB	16	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYIK010000024.1 Salmonella enterica subsp. enterica serovar London strain PNCS017501 SAMN35795159-rid18529453.denovo.24, whole genome shotgun sequence	20843..21280	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYIK010000088.1 Salmonella enterica subsp. enterica serovar London strain PNCS017501 SAMN35795159-rid18529453.guided.66, whole genome shotgun sequence	13807..14244	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.23	114 / 114	ABNYIK010000073.1 Salmonella enterica subsp. enterica serovar London strain PNCS017501 SAMN35795159-rid18529453.denovo.76, whole genome shotgun sequence	1293..1405																																																						avrA	ABNYIK010000019.1	36960..37829	99.425	870	0						
GCA_032773615.1_PDT001786409.1_genomic.fna	Salmonella_enterica	0.5215	254.549 KB	5	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYIM010000001.1 Salmonella enterica subsp. enterica serovar Give strain FSIS12322792 SAMN35820170-rid18530823.denovo.01, whole genome shotgun sequence	655406..655843	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYIM010000038.1 Salmonella enterica subsp. enterica serovar Give strain FSIS12322792 SAMN35820170-rid18530823.guided.28, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABNYIM010000030.1 Salmonella enterica subsp. enterica serovar Give strain FSIS12322792 SAMN35820170-rid18530823.denovo.33, whole genome shotgun sequence	2246..2354	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNYIM010000013.1 Salmonella enterica subsp. enterica serovar Give strain FSIS12322792 SAMN35820170-rid18530823.denovo.13, whole genome shotgun sequence	15840..15981																																																avrA	ABNYIM010000003.1	182099..182968	98.966	870	0						
GCA_032773635.1_PDT001786407.1_genomic.fna	Salmonella_enterica	0.5231	77.718 KB	22	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYIN010000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322774 SAMN35820002-rid18526293.denovo.004, whole genome shotgun sequence	90404..90841	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYIN010000142.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322774 SAMN35820002-rid18526293.guided.072, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABNYIN010000098.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322774 SAMN35820002-rid18526293.denovo.101, whole genome shotgun sequence	2246..2354	enterobacteriales	ColpVC	98.96	193 / 193	ABNYIN010000105.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322774 SAMN35820002-rid18526293.denovo.108, whole genome shotgun sequence	805..997		enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	ABNYIN010000065.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322774 SAMN35820002-rid18526293.denovo.065, whole genome shotgun sequence	15683..15822																																																				
GCA_032773655.1_PDT001786406.1_genomic.fna	Salmonella_enterica	0.5216	398.505 KB	4	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNYIO010000001.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322783 SAMN35820147-rid18529443.denovo.01, whole genome shotgun sequence	393791..394228	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNYIO010000029.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322783 SAMN35820147-rid18529443.guided.20, whole genome shotgun sequence	33524..33961	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYIO010000002.1	545585..546453	99.655	869	0						
GCA_032773675.1_PDT001786403.1_genomic.fna	Salmonella_enterica	0.52	93.121 KB	18	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYIR010000003.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322772 SAMN35819999-rid18520113.denovo.003, whole genome shotgun sequence	52068..52505	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYIR010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322772 SAMN35819999-rid18520113.denovo.073, whole genome shotgun sequence	6683..7519	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYIR010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322772 SAMN35819999-rid18520113.denovo.073, whole genome shotgun sequence	7519..8322	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNYIR010000114.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322772 SAMN35819999-rid18520113.guided.050, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYIR010000117.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322772 SAMN35819999-rid18520113.guided.078, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYIR010000117.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322772 SAMN35819999-rid18520113.guided.078, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNYIR010000078.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322772 SAMN35819999-rid18520113.denovo.082, whole genome shotgun sequence	2309..3514	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYIR010000118.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322772 SAMN35819999-rid18520113.guided.085, whole genome shotgun sequence	2340..3545	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNYIR010000077.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322772 SAMN35819999-rid18520113.denovo.081, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNYIR010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322772 SAMN35819999-rid18520113.denovo.073, whole genome shotgun sequence	5799..6060		enterobacteriales	IncFII	96.95	262 / 261	ABNYIR010000117.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322772 SAMN35819999-rid18520113.guided.078, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABNYIR010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322772 SAMN35819999-rid18520113.denovo.068, whole genome shotgun sequence	2732..3104																																		avrA	ABNYIR010000041.1	39484..40353	99.655	870	0						
GCA_032773695.1_PDT001786405.1_genomic.fna	Salmonella_enterica	0.52	131.522 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYIP010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322780 SAMN35820088-rid18527893.denovo.01, whole genome shotgun sequence	157902..158339	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYIP010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322780 SAMN35820088-rid18527893.denovo.38, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYIP010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322780 SAMN35820088-rid18527893.denovo.38, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNYIP010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322780 SAMN35820088-rid18527893.guided.20, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYIP010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322780 SAMN35820088-rid18527893.guided.39, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYIP010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322780 SAMN35820088-rid18527893.guided.39, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNYIP010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322780 SAMN35820088-rid18527893.denovo.38, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYIP010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322780 SAMN35820088-rid18527893.guided.39, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYIP010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322780 SAMN35820088-rid18527893.denovo.38, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYIP010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322780 SAMN35820088-rid18527893.guided.39, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYIP010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322780 SAMN35820088-rid18527893.denovo.58, whole genome shotgun sequence	13966..14525	enterobacteriales	IncX1	98.66	374 / 374	ABNYIP010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322780 SAMN35820088-rid18527893.denovo.55, whole genome shotgun sequence	5799..6172																																																avrA	ABNYIP010000013.1	95321..96190	99.655	870	0						
GCA_032773715.1_PDT001786404.1_genomic.fna	Salmonella_enterica	0.521	207.702 KB	7	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYIQ010000001.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12322788 SAMN35820164-rid18529433.denovo.01, whole genome shotgun sequence	477369..477806	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYIQ010000039.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12322788 SAMN35820164-rid18529433.guided.28, whole genome shotgun sequence	42316..42753	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYIQ010000012.1	105903..106771	99.195	870	0						
GCA_032773735.1_PDT001786402.1_genomic.fna	Salmonella_enterica	0.5216	222.749 KB	7	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYIS010000004.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12322782 SAMN35820146-rid18524663.denovo.04, whole genome shotgun sequence	160077..160514	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYIS010000047.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12322782 SAMN35820146-rid18524663.guided.28, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.08	131 / 131	ABNYIS010000033.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12322782 SAMN35820146-rid18524663.denovo.36, whole genome shotgun sequence	1039..1169	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNYIS010000029.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12322782 SAMN35820146-rid18524663.denovo.32, whole genome shotgun sequence	5519..5660																																																avrA	ABNYIS010000007.1	136867..137736	99.08	870	0						
GCA_032773755.1_PDT001786401.1_genomic.fna	Salmonella_enterica	0.5215	194.508 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYIU010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYIU010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.denovo.39, whole genome shotgun sequence	11982..12773	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYIU010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.denovo.39, whole genome shotgun sequence	11982..12773	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYIU010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.denovo.55, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYIU010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.denovo.55, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNYIU010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.guided.32, whole genome shotgun sequence	16064..16501	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYIU010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.guided.58, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYIU010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.guided.58, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYIU010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.guided.59, whole genome shotgun sequence	532..1557	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYIU010000073.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.guided.61, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aac(3)-IV	99.87	777/777	ABNYIU010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.guided.62, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNYIU010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.denovo.47, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNYIU010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.guided.49, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNYIU010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.denovo.39, whole genome shotgun sequence	10638..11477	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYIU010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.guided.58, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYIU010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.denovo.38, whole genome shotgun sequence	1827..3026	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYIU010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.guided.60, whole genome shotgun sequence	786..1985	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNYIU010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.denovo.44, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNYIU010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.guided.50, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510	dfrA14	99.79	474/474	ABNYIU010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.guided.51, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYIU010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322806 SAMN35820200-rid18530813.denovo.35, whole genome shotgun sequence	9109..9668																																																						avrA	ABNYIU010000002.1	149895..150764	99.655	870	0						
GCA_032773775.1_PDT001786400.1_genomic.fna	Salmonella_enterica	0.5184	451.157 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(4)-Ia,aac(3)-IV,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaHERA-3,blaHERA-3,tet(B),tet(B)	1	parC_p.T57S	3	Col(pHAD28),IncHI2,IncHI2A	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYIT010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.denovo.01, whole genome shotgun sequence	819443..819880	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYIT010000014.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.denovo.14, whole genome shotgun sequence	1921..2757	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYIT010000014.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.denovo.14, whole genome shotgun sequence	1119..1921	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYIT010000014.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.denovo.14, whole genome shotgun sequence	1118..1921	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYIT010000014.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.denovo.14, whole genome shotgun sequence	1118..1921	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYIT010000014.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.denovo.14, whole genome shotgun sequence	1118..1921	Streptomycin	AF321550	aph(4)-Ia	100	1026/1026	ABNYIT010000021.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.denovo.21, whole genome shotgun sequence	1855..2880	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYIT010000021.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.denovo.21, whole genome shotgun sequence	850..1626	Gentamicin, Tobramycin	DQ241380	aph(4)-Ia	100	1026/1026	ABNYIT010000039.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.guided.27, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYIT010000039.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.guided.27, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	99.09	438/438	ABNYIT010000040.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.guided.28, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYIT010000041.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.guided.29, whole genome shotgun sequence	1961..2797	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYIT010000041.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.guided.29, whole genome shotgun sequence	1159..1961	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYIT010000041.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.guided.29, whole genome shotgun sequence	1158..1961	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYIT010000041.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.guided.29, whole genome shotgun sequence	1158..1961	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYIT010000041.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.guided.29, whole genome shotgun sequence	1158..1961	Streptomycin	AF321550	blaHERA-3	98.85	873/873	ABNYIT010000032.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.denovo.39, whole genome shotgun sequence	76..948	Amoxicillin, Ampicillin, Ticarcillin	AF398335	blaHERA-3	98.85	873/873	ABNYIT010000043.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.guided.38, whole genome shotgun sequence	117..989	Amoxicillin, Ampicillin, Ticarcillin	AF398335	tet(B)	100	1206/1206	ABNYIT010000025.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.denovo.30, whole genome shotgun sequence	2296..3501	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYIT010000042.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.guided.31, whole genome shotgun sequence	2343..3548	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNYIT010000030.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.denovo.36, whole genome shotgun sequence	1709..1839	enterobacteriales	IncHI2	100	327 / 327	ABNYIT010000019.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.denovo.19, whole genome shotgun sequence	20406..20732		enterobacteriales	IncHI2A	99.52	630 / 630	ABNYIT010000019.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322791 SAMN35820159-rid18523053.denovo.19, whole genome shotgun sequence	35600..36229																																									avrA	ABNYIT010000002.1	183909..184778	99.54	870	0						
GCA_032773795.1_PDT001786399.1_genomic.fna	Salmonella_enterica	0.5195	214.302 KB	9	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	5	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	1	p0111	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNYIV010000001.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322789 SAMN35820165-rid18530803.denovo.01, whole genome shotgun sequence	183184..183621	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNYIV010000033.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322789 SAMN35820165-rid18530803.denovo.35, whole genome shotgun sequence	22117..22896	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	98.17	438/438	ABNYIV010000050.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322789 SAMN35820165-rid18530803.guided.32, whole genome shotgun sequence	10647..11084	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNYIV010000051.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322789 SAMN35820165-rid18530803.guided.34, whole genome shotgun sequence	22144..22923	Spectinomycin, Streptomycin	D43625	fosA7	97.16	423/423	ABNYIV010000002.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322789 SAMN35820165-rid18530803.denovo.02, whole genome shotgun sequence	160605..161027	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNYIV010000053.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322789 SAMN35820165-rid18530803.guided.39, whole genome shotgun sequence	18575..18997	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNYIV010000033.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322789 SAMN35820165-rid18530803.denovo.35, whole genome shotgun sequence	23401..24240	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYIV010000051.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322789 SAMN35820165-rid18530803.guided.34, whole genome shotgun sequence	23428..24267	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYIV010000037.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322789 SAMN35820165-rid18530803.denovo.43, whole genome shotgun sequence	6632..7831	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYIV010000055.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322789 SAMN35820165-rid18530803.guided.42, whole genome shotgun sequence	6673..7872	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	p0111	98.08	885 / 885	ABNYIV010000023.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322789 SAMN35820165-rid18530803.denovo.23, whole genome shotgun sequence	26048..26932																																																						avrA	ABNYIV010000005.1	74894..75763	99.655	870	0						
GCA_032773815.1_PDT001786398.1_genomic.fna	Salmonella_enterica	0.5224	370.238 KB	4	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYIW010000001.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322785 SAMN35820143-rid18518763.denovo.01, whole genome shotgun sequence	680573..681010	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYIW010000023.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322785 SAMN35820143-rid18518763.denovo.27, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYIW010000023.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322785 SAMN35820143-rid18518763.denovo.27, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYIW010000023.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322785 SAMN35820143-rid18518763.denovo.27, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYIW010000023.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322785 SAMN35820143-rid18518763.denovo.27, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYIW010000023.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322785 SAMN35820143-rid18518763.denovo.27, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNYIW010000035.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322785 SAMN35820143-rid18518763.guided.21, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYIW010000038.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322785 SAMN35820143-rid18518763.guided.26, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYIW010000038.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322785 SAMN35820143-rid18518763.guided.26, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYIW010000038.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322785 SAMN35820143-rid18518763.guided.26, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYIW010000038.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322785 SAMN35820143-rid18518763.guided.26, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYIW010000038.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322785 SAMN35820143-rid18518763.guided.26, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNYIW010000025.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322785 SAMN35820143-rid18518763.denovo.30, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYIW010000039.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322785 SAMN35820143-rid18518763.guided.29, whole genome shotgun sequence	959..2158	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYIW010000003.1	573274..574143	99.655	870	0						
GCA_032773835.1_PDT001786397.1_genomic.fna	Salmonella_enterica	0.5214	161.048 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYIX010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.denovo.01, whole genome shotgun sequence	269787..270224	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYIX010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.denovo.54, whole genome shotgun sequence	8007..8798	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYIX010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.denovo.54, whole genome shotgun sequence	8007..8798	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYIX010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.denovo.64, whole genome shotgun sequence	2792..3817	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYIX010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.denovo.64, whole genome shotgun sequence	4046..4822	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNYIX010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.guided.30, whole genome shotgun sequence	30325..30762	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYIX010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.guided.55, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYIX010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.guided.55, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYIX010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.guided.67, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYIX010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.guided.67, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABNYIX010000057.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.denovo.63, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNYIX010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.guided.62, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNYIX010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.denovo.54, whole genome shotgun sequence	6663..7502	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYIX010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.guided.55, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYIX010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.denovo.45, whole genome shotgun sequence	928..2127	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYIX010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.guided.59, whole genome shotgun sequence	959..2158	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYIX010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322786 SAMN35820144-rid18526283.denovo.42, whole genome shotgun sequence	9109..9668																																																						avrA	ABNYIX010000002.1	39430..40299	99.655	870	0						
GCA_032773915.1_PDT001786394.1_genomic.fna	Salmonella_enterica	0.5218	96.79 KB	16	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYIZ010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322713 SAMN35819951-rid18529413.denovo.01, whole genome shotgun sequence	100825..101262	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYIZ010000094.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322713 SAMN35819951-rid18529413.guided.33, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYIZ010000060.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322713 SAMN35819951-rid18529413.denovo.63, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNYIZ010000061.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322713 SAMN35819951-rid18529413.denovo.64, whole genome shotgun sequence	3405..3666																																																avrA	ABNYIZ010000006.1	149489..150358	99.54	870	0						
GCA_032773935.1_PDT001786378.1_genomic.fna	Salmonella_enterica	0.5218	89.355 KB	17	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	9,46:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	I 9,46:l,z13:1,5	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNYJC010000009.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322777 SAMN35820075-rid18518733.denovo.009, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYJC010000076.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322777 SAMN35820075-rid18518733.denovo.081, whole genome shotgun sequence	5994..6830	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNYJC010000076.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322777 SAMN35820075-rid18518733.denovo.081, whole genome shotgun sequence	4963..5776	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aph(3'')-Ib	100	804/804	ABNYJC010000076.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322777 SAMN35820075-rid18518733.denovo.081, whole genome shotgun sequence	6830..7633	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNYJC010000120.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322777 SAMN35820075-rid18518733.guided.068, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYJC010000123.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322777 SAMN35820075-rid18518733.guided.080, whole genome shotgun sequence	4570..5406	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNYJC010000123.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322777 SAMN35820075-rid18518733.guided.080, whole genome shotgun sequence	5624..6437	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aph(3'')-Ib	100	804/804	ABNYJC010000123.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322777 SAMN35820075-rid18518733.guided.080, whole genome shotgun sequence	3767..4570	Streptomycin	AF321551	sul2	99.88	816/816	ABNYJC010000058.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322777 SAMN35820075-rid18518733.denovo.059, whole genome shotgun sequence	3077..3892	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNYJC010000121.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322777 SAMN35820075-rid18518733.guided.072, whole genome shotgun sequence	12299..13114	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNYJC010000085.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322777 SAMN35820075-rid18518733.denovo.091, whole genome shotgun sequence	681..1886	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYJC010000124.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322777 SAMN35820075-rid18518733.guided.085, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYJC010000011.1	102577..103445	99.655	869	0						
GCA_032773995.1_PDT001786392.1_genomic.fna	Salmonella_enterica	0.5222	86.859 KB	18	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYJD010000052.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12322771 SAMN35819998-rid18524653.denovo.052, whole genome shotgun sequence	11345..11782	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYJD010000109.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12322771 SAMN35819998-rid18524653.guided.056, whole genome shotgun sequence	15465..15902	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032774295.1_PDT001786341.1_genomic.fna	Salmonella_enterica	0.5222	52.308 KB	29	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNYJT010000019.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322775 SAMN35820004-rid18518683.denovo.019, whole genome shotgun sequence	13049..13486	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYJT010000104.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322775 SAMN35820004-rid18518683.denovo.106, whole genome shotgun sequence	6372..7208	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNYJT010000104.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322775 SAMN35820004-rid18518683.denovo.106, whole genome shotgun sequence	5341..6154	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	aph(3'')-Ib	100	804/804	ABNYJT010000104.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322775 SAMN35820004-rid18518683.denovo.106, whole genome shotgun sequence	7208..8011	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABNYJT010000180.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322775 SAMN35820004-rid18518683.guided.107, whole genome shotgun sequence	9056..9493	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYJT010000181.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322775 SAMN35820004-rid18518683.guided.108, whole genome shotgun sequence	4570..5406	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABNYJT010000181.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322775 SAMN35820004-rid18518683.guided.108, whole genome shotgun sequence	5624..6437	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	aph(3'')-Ib	100	804/804	ABNYJT010000181.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322775 SAMN35820004-rid18518683.guided.108, whole genome shotgun sequence	3767..4570	Streptomycin	AF321551	sul2	99.88	816/816	ABNYJT010000096.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322775 SAMN35820004-rid18518683.denovo.097, whole genome shotgun sequence	3077..3892	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABNYJT010000182.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322775 SAMN35820004-rid18518683.guided.112, whole genome shotgun sequence	6639..7454	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNYJT010000120.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322775 SAMN35820004-rid18518683.denovo.125, whole genome shotgun sequence	1194..2399	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYJT010000183.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322775 SAMN35820004-rid18518683.guided.147, whole genome shotgun sequence	1624..2829	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABNYJT010000184.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322775 SAMN35820004-rid18518683.guided.148, whole genome shotgun sequence	1624..2829	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																													parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYJT010000018.1	61548..62416	99.655	869	0						
GCA_032774705.1_PDT001786209.1_genomic.fna	Salmonella_enterica	0.5235	394.305 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYKM010000001.1 Salmonella enterica strain PNUSAS357263 SAMN35803726-rid18517263.denovo.01, whole genome shotgun sequence	463583..464020	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYKM010000038.1 Salmonella enterica strain PNUSAS357263 SAMN35803726-rid18517263.guided.24, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032774745.1_PDT001786207.1_genomic.fna	Salmonella_enterica	0.5205	529.839 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNYKP010000001.1 Salmonella enterica strain PNUSAS357507 SAMN35809736-rid18527713.denovo.01, whole genome shotgun sequence	779651..780088	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNYKP010000020.1 Salmonella enterica strain PNUSAS357507 SAMN35809736-rid18527713.guided.14, whole genome shotgun sequence	3165..3602	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNYKP010000015.1 Salmonella enterica strain PNUSAS357507 SAMN35809736-rid18527713.denovo.19, whole genome shotgun sequence	239..369																																																						avrA	ABNYKP010000004.1	140114..140983	99.425	870	0						
GCA_032774765.1_PDT001786206.1_genomic.fna	Salmonella_enterica	0.5213	728.259 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYKO010000001.1 Salmonella enterica strain PNUSAS357245 SAMN35803775-rid18522843.denovo.01, whole genome shotgun sequence	645058..645495	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYKO010000016.1 Salmonella enterica strain PNUSAS357245 SAMN35803775-rid18522843.guided.12, whole genome shotgun sequence	4278..4715	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYKO010000003.1	561229..562099	99.656	871	0						
GCA_032774785.1_PDT001786208.1_genomic.fna	Salmonella_enterica	0.5198	400.169 KB	5	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYKN010000001.1 Salmonella enterica strain PNUSAS357240 SAMN35803787-rid18524463.denovo.01, whole genome shotgun sequence	623665..624102	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYKN010000088.1 Salmonella enterica strain PNUSAS357240 SAMN35803787-rid18524463.guided.36, whole genome shotgun sequence	2706..3143	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNYKN010000023.1 Salmonella enterica strain PNUSAS357240 SAMN35803787-rid18524463.denovo.23, whole genome shotgun sequence	11590..12232																																																						avrA	ABNYKN010000004.1	170600..171469	99.655	870	0						
GCA_032774825.1_PDT001786205.1_genomic.fna	Salmonella_enterica	0.521	233.686 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(pB171),IncI(Gamma)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYKR010000002.1 Salmonella enterica strain PNUSAS357539 SAMN35809870-rid18522833.denovo.02, whole genome shotgun sequence	151395..151832	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYKR010000053.1 Salmonella enterica strain PNUSAS357539 SAMN35809870-rid18522833.guided.43, whole genome shotgun sequence	460..897	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNYKR010000025.1 Salmonella enterica strain PNUSAS357539 SAMN35809870-rid18522833.denovo.25, whole genome shotgun sequence	3895..4537	enterobacteriales	IncI(Gamma)	97.08	137 / 141	ABNYKR010000018.1 Salmonella enterica strain PNUSAS357539 SAMN35809870-rid18522833.denovo.18, whole genome shotgun sequence	70357..70493																																																											
GCA_032774985.1_PDT001786178.1_genomic.fna	Salmonella_enterica	0.5224	761.796 KB	2	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYLA010000001.1 Salmonella enterica strain PNUSAS357503 SAMN35809733-rid18526023.denovo.01, whole genome shotgun sequence	1370966..1371403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYLA010000017.1 Salmonella enterica strain PNUSAS357503 SAMN35809733-rid18526023.guided.12, whole genome shotgun sequence	21645..22082	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYLA010000004.1	151330..152199	99.77	870	0						
GCA_032775045.1_PDT001786176.1_genomic.fna	Salmonella_enterica	0.5214	439.989 KB	4	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNYLB010000001.1 Salmonella enterica strain PNUSAS357526 SAMN35809854-rid18527693.denovo.01, whole genome shotgun sequence	307821..308258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNYLB010000020.1 Salmonella enterica strain PNUSAS357526 SAMN35809854-rid18527693.guided.17, whole genome shotgun sequence	4119..4556	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032775065.1_PDT001786173.1_genomic.fna	Salmonella_enterica	0.5208	400.689 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYLG010000001.1 Salmonella enterica strain PNUSAS357251 SAMN35803781-rid18524413.denovo.01, whole genome shotgun sequence	110416..110853	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYLG010000030.1 Salmonella enterica strain PNUSAS357251 SAMN35803781-rid18524413.guided.21, whole genome shotgun sequence	2035..2472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	ABNYLG010000021.1 Salmonella enterica strain PNUSAS357251 SAMN35803781-rid18524413.denovo.23, whole genome shotgun sequence	3345..3457																																																						avrA	ABNYLG010000003.1	238664..239533	98.966	870	0						
GCA_032775085.1_PDT001786174.1_genomic.fna	Salmonella_enterica	0.522	341.181 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYLC010000002.1 Salmonella enterica strain PNUSAS357536 SAMN35809862-rid18519913.denovo.02, whole genome shotgun sequence	145210..145647	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYLC010000049.1 Salmonella enterica strain PNUSAS357536 SAMN35809862-rid18519913.guided.37, whole genome shotgun sequence	2730..3167	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNYLC010000018.1 Salmonella enterica strain PNUSAS357536 SAMN35809862-rid18519913.denovo.18, whole genome shotgun sequence	36049..36691	enterobacteriales	IncFII(S)	100	262 / 262	ABNYLC010000018.1 Salmonella enterica strain PNUSAS357536 SAMN35809862-rid18519913.denovo.18, whole genome shotgun sequence	51776..52037																																																avrA	ABNYLC010000001.1	400765..401634	99.885	870	0						
GCA_032775105.1_PDT001786172.1_genomic.fna	Salmonella_enterica	0.5221	714.473 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	2	Col156,ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYLE010000001.1 Salmonella enterica strain PNUSAS357492 SAMN35809729-rid18530603.denovo.01, whole genome shotgun sequence	1374582..1375019	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYLE010000017.1 Salmonella enterica strain PNUSAS357492 SAMN35809729-rid18530603.denovo.21, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYLE010000017.1 Salmonella enterica strain PNUSAS357492 SAMN35809729-rid18530603.denovo.21, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYLE010000017.1 Salmonella enterica strain PNUSAS357492 SAMN35809729-rid18530603.denovo.21, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYLE010000017.1 Salmonella enterica strain PNUSAS357492 SAMN35809729-rid18530603.denovo.21, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYLE010000017.1 Salmonella enterica strain PNUSAS357492 SAMN35809729-rid18530603.denovo.21, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNYLE010000031.1 Salmonella enterica strain PNUSAS357492 SAMN35809729-rid18530603.guided.13, whole genome shotgun sequence	14563..15000	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYLE010000033.1 Salmonella enterica strain PNUSAS357492 SAMN35809729-rid18530603.guided.20, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYLE010000033.1 Salmonella enterica strain PNUSAS357492 SAMN35809729-rid18530603.guided.20, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYLE010000033.1 Salmonella enterica strain PNUSAS357492 SAMN35809729-rid18530603.guided.20, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYLE010000033.1 Salmonella enterica strain PNUSAS357492 SAMN35809729-rid18530603.guided.20, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYLE010000033.1 Salmonella enterica strain PNUSAS357492 SAMN35809729-rid18530603.guided.20, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNYLE010000018.1 Salmonella enterica strain PNUSAS357492 SAMN35809729-rid18530603.denovo.23, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYLE010000034.1 Salmonella enterica strain PNUSAS357492 SAMN35809729-rid18530603.guided.22, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	ABNYLE010000019.1 Salmonella enterica strain PNUSAS357492 SAMN35809729-rid18530603.denovo.24, whole genome shotgun sequence	990..1141	enterobacteriales	ColpVC	98.96	193 / 193	ABNYLE010000023.1 Salmonella enterica strain PNUSAS357492 SAMN35809729-rid18530603.denovo.28, whole genome shotgun sequence	805..997																																																avrA	ABNYLE010000003.1	573268..574137	99.655	870	0						
GCA_032775125.1_PDT001786170.1_genomic.fna	Salmonella_enterica	0.5222	517.316 KB	3	aroC_81,dnaN_69,hemD_36,hisD_12,purE_68,sucA_12,thrA_17	203	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_81	dnaN	100	100	dnaN_69	hemD	100	100	hemD_36	hisD	100	100	hisD_12	purE	100	100	purE_68	sucA	100	100	sucA_12	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNYLH010000001.1 Salmonella enterica strain PNUSAS357253 SAMN35803737-rid18531793.denovo.01, whole genome shotgun sequence	470412..470849	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNYLH010000026.1 Salmonella enterica strain PNUSAS357253 SAMN35803737-rid18531793.guided.19, whole genome shotgun sequence	5057..5494	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	97.71	262 / 262	ABNYLH010000013.1 Salmonella enterica strain PNUSAS357253 SAMN35803737-rid18531793.denovo.13, whole genome shotgun sequence	48087..48346																																																						avrA	ABNYLH010000002.1	554556..555425	99.655	870	0						
GCA_032775145.1_PDT001786171.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYLF010000001.1 Salmonella enterica strain PNUSAS357493 SAMN35809720-rid18521333.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYLF010000022.1 Salmonella enterica strain PNUSAS357493 SAMN35809720-rid18521333.guided.15, whole genome shotgun sequence	15274..15711	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYLF010000012.1 Salmonella enterica strain PNUSAS357493 SAMN35809720-rid18521333.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNYLF010000015.1 Salmonella enterica strain PNUSAS357493 SAMN35809720-rid18521333.denovo.18, whole genome shotgun sequence	3385..3646																																																avrA	ABNYLF010000002.1	553642..554511	99.54	870	0						
GCA_032775165.1_PDT001786167.1_genomic.fna	Salmonella_enterica	0.5207	478.79 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYLI010000001.1 Salmonella enterica strain PNUSAS357508 SAMN35809723-rid18529203.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYLI010000021.1 Salmonella enterica strain PNUSAS357508 SAMN35809723-rid18529203.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYLI010000012.1 Salmonella enterica strain PNUSAS357508 SAMN35809723-rid18529203.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNYLI010000015.1 Salmonella enterica strain PNUSAS357508 SAMN35809723-rid18529203.denovo.18, whole genome shotgun sequence	3406..3667																																																avrA	ABNYLI010000002.1	585474..586343	99.54	870	0						
GCA_032775205.1_PDT001786165.1_genomic.fna	Salmonella_enterica	0.5228	443.924 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYLJ010000001.1 Salmonella enterica strain PNUSAS357534 SAMN35809873-rid18529193.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYLJ010000021.1 Salmonella enterica strain PNUSAS357534 SAMN35809873-rid18529193.guided.12, whole genome shotgun sequence	36468..36905	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYLJ010000005.1	147135..148004	98.966	870	0						
GCA_032775245.1_PDT001786164.1_genomic.fna	Salmonella_enterica	0.5217	482.872 KB	4	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNYLK010000001.1 Salmonella enterica strain PNUSAS357499 SAMN35809717-rid18519903.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNYLK010000033.1 Salmonella enterica strain PNUSAS357499 SAMN35809717-rid18519903.guided.22, whole genome shotgun sequence	3399..3836	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYLK010000002.1	523253..524122	99.195	870	0						
GCA_032775265.1_PDT001786162.1_genomic.fna	Salmonella_enterica	0.5206	274.321 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYLM010000001.1 Salmonella enterica strain PNUSAS357381 SAMN35809526-rid18530593.denovo.01, whole genome shotgun sequence	727905..728342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYLM010000047.1 Salmonella enterica strain PNUSAS357381 SAMN35809526-rid18530593.guided.30, whole genome shotgun sequence	7079..7516	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYLM010000002.1	551155..552024	99.195	870	0						
GCA_032775285.1_PDT001786161.1_genomic.fna	Salmonella_enterica	0.5195	428.465 KB	5	aroC_140,dnaN_392,hemD_40,hisD_11,purE_140*,sucA_180,thrA_18	1542*	3,10:z10:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(S),IncFII(SARC14)	aroC	100	100	aroC_140	dnaN	100	100	dnaN_392	hemD	100	100	hemD_40	hisD	100	100	hisD_11	purE	99.749373433584	100	purE_140*	sucA	100	100	sucA_180	thrA	100	100	thrA_18	3,10	z10	1,5	Salmonella enterica subspecies enterica (subspecies I)	Lexington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNYLN010000003.1 Salmonella enterica strain PNUSAS357489 SAMN35809742-rid18522803.denovo.03, whole genome shotgun sequence	497189..497626	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNYLN010000039.1 Salmonella enterica strain PNUSAS357489 SAMN35809742-rid18522803.guided.21, whole genome shotgun sequence	9966..10403	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	98.42	253 / 262	ABNYLN010000016.1 Salmonella enterica strain PNUSAS357489 SAMN35809742-rid18522803.denovo.16, whole genome shotgun sequence	38486..38738	enterobacteriales	IncFII(SARC14)	100	445 / 445	ABNYLN010000016.1 Salmonella enterica strain PNUSAS357489 SAMN35809742-rid18522803.denovo.16, whole genome shotgun sequence	37782..38226																																																											
GCA_032775305.1_PDT001786159.1_genomic.fna	Salmonella_enterica	0.5226	226.08 KB	5	aroC_17,dnaN_2,hemD_10,hisD_166,purE_147,sucA_21,thrA_119	493	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_2	hemD	100	100	hemD_10	hisD	100	100	hisD_166	purE	100	100	purE_147	sucA	100	100	sucA_21	thrA	100	100	thrA_119	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYLP010000001.1 Salmonella enterica strain PNUSAS357276 SAMN35803678-rid18518483.denovo.01, whole genome shotgun sequence	358593..359030	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYLP010000040.1 Salmonella enterica strain PNUSAS357276 SAMN35803678-rid18518483.guided.28, whole genome shotgun sequence	2783..3220	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYLP010000002.1	181106..181975	99.655	870	0						
GCA_032775325.1_PDT001786158.1_genomic.fna	Salmonella_enterica	0.5228	560.9 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNYLO010000001.1 Salmonella enterica strain PNUSAS357530 SAMN35809857-rid18526003.denovo.01, whole genome shotgun sequence	1045271..1045708	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNYLO010000023.1 Salmonella enterica strain PNUSAS357530 SAMN35809857-rid18526003.guided.19, whole genome shotgun sequence	580..1017	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYLO010000003.1	419858..420727	99.54	870	0						
GCA_032775345.1_PDT001786155.1_genomic.fna	Salmonella_enterica	0.52	333.002 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYLR010000001.1 Salmonella enterica strain PNUSAS357484 SAMN35809738-rid18530573.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYLR010000043.1 Salmonella enterica strain PNUSAS357484 SAMN35809738-rid18530573.guided.31, whole genome shotgun sequence	10908..11345	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYLR010000014.1 Salmonella enterica strain PNUSAS357484 SAMN35809738-rid18530573.denovo.14, whole genome shotgun sequence	78970..79529	enterobacteriales	IncX1	98.93	374 / 374	ABNYLR010000020.1 Salmonella enterica strain PNUSAS357484 SAMN35809738-rid18530573.denovo.22, whole genome shotgun sequence	7449..7822																																																avrA	ABNYLR010000003.1	149923..150792	99.655	870	0						
GCA_032775365.1_PDT001786157.1_genomic.fna	Salmonella_enterica	0.5216	750.287 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYLS010000001.1 Salmonella enterica strain PNUSAS357269 SAMN35803732-rid18529183.denovo.01, whole genome shotgun sequence	422662..423099	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYLS010000020.1 Salmonella enterica strain PNUSAS357269 SAMN35803732-rid18529183.guided.15, whole genome shotgun sequence	12762..13199	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.39	446 / 445	ABNYLS010000010.1 Salmonella enterica strain PNUSAS357269 SAMN35803732-rid18529183.denovo.10, whole genome shotgun sequence	44226..44670	enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABNYLS010000010.1 Salmonella enterica strain PNUSAS357269 SAMN35803732-rid18529183.denovo.10, whole genome shotgun sequence	44931..45143																																																avrA	ABNYLS010000003.1	545202..546070	99.425	870	0						
GCA_032775385.1_PDT001786152.1_genomic.fna	Salmonella_enterica	0.5229	444.366 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYLQ010000001.1 Salmonella enterica strain PNUSAS357257 SAMN35803720-rid18531783.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYLQ010000029.1 Salmonella enterica strain PNUSAS357257 SAMN35803720-rid18531783.guided.23, whole genome shotgun sequence	3832..4269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYLQ010000006.1	150355..151224	99.655	870	0						
GCA_032775425.1_PDT001786150.1_genomic.fna	Salmonella_enterica	0.5215	737.595 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYLX010000001.1 Salmonella enterica strain PNUSAS357248 SAMN35803778-rid18531773.denovo.01, whole genome shotgun sequence	1319432..1319869	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYLX010000020.1 Salmonella enterica strain PNUSAS357248 SAMN35803778-rid18531773.guided.11, whole genome shotgun sequence	39159..39596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYLX010000003.1	561829..562699	99.656	871	0						
GCA_032775845.1_PDT001786149.1_genomic.fna	Salmonella_enterica	0.5221	231.326 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYMO010000003.1 Salmonella enterica strain PNUSAS357527 SAMN35809867-rid18518473.denovo.03, whole genome shotgun sequence	144280..144717	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYMO010000046.1 Salmonella enterica strain PNUSAS357527 SAMN35809867-rid18518473.guided.39, whole genome shotgun sequence	2106..2543	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032775865.1_PDT001786148.1_genomic.fna	Salmonella_enterica	0.5227	332.888 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYMP010000002.1 Salmonella enterica strain PNUSAS357547 SAMN35809876-rid18525993.denovo.02, whole genome shotgun sequence	244335..244772	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYMP010000029.1 Salmonella enterica strain PNUSAS357547 SAMN35809876-rid18525993.guided.21, whole genome shotgun sequence	4882..5319	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYMP010000007.1	149842..150711	99.655	870	0						
GCA_032775885.1_PDT001786147.1_genomic.fna	Salmonella_enterica	0.5229	324.823 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYMR010000001.1 Salmonella enterica strain PNUSAS357266 SAMN35803729-rid18518463.denovo.01, whole genome shotgun sequence	626775..627212	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYMR010000005.1	150017..150886	99.655	870	0						
GCA_032775905.1_PDT001786145.1_genomic.fna	Salmonella_enterica	0.5217	355.837 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNYMT010000011.1 Salmonella enterica strain PNUSAS357260 SAMN35803723-rid18529173.denovo.11, whole genome shotgun sequence	70815..71252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNYMT010000024.1 Salmonella enterica strain PNUSAS357260 SAMN35803723-rid18529173.guided.21, whole genome shotgun sequence	744..1181	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYMT010000001.1	131917..132786	98.966	870	0						
GCA_032775925.1_PDT001786144.1_genomic.fna	Salmonella_enterica	0.5226	404.869 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYMS010000002.1 Salmonella enterica strain PNUSAS357535 SAMN35809859-rid18521323.denovo.02, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYMS010000029.1 Salmonella enterica strain PNUSAS357535 SAMN35809859-rid18521323.guided.18, whole genome shotgun sequence	8130..8567	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYMS010000007.1	174277..175145	99.425	870	0						
GCA_032775945.1_PDT001786143.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYMU010000001.1 Salmonella enterica strain PNUSAS357494 SAMN35809726-rid18524383.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYMU010000017.1 Salmonella enterica strain PNUSAS357494 SAMN35809726-rid18524383.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABNYMU010000002.1	553635..554504	99.54	870	0						
GCA_032775965.1_PDT001786140.1_genomic.fna	Salmonella_enterica	0.522	341.24 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYMX010000002.1 Salmonella enterica strain PNUSAS357529 SAMN35809872-rid18531753.denovo.02, whole genome shotgun sequence	145192..145629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYMX010000051.1 Salmonella enterica strain PNUSAS357529 SAMN35809872-rid18531753.guided.36, whole genome shotgun sequence	4354..4791	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNYMX010000014.1 Salmonella enterica strain PNUSAS357529 SAMN35809872-rid18531753.denovo.14, whole genome shotgun sequence	48427..49069	enterobacteriales	IncFII(S)	100	262 / 262	ABNYMX010000014.1 Salmonella enterica strain PNUSAS357529 SAMN35809872-rid18531753.denovo.14, whole genome shotgun sequence	64154..64415																																																avrA	ABNYMX010000001.1	450793..451662	99.885	870	0						
GCA_032776025.1_PDT001786138.1_genomic.fna	Salmonella_enterica	0.5214	227.855 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYMZ010000003.1 Salmonella enterica strain PNUSAS357524 SAMN35809869-rid18527663.denovo.03, whole genome shotgun sequence	151391..151828	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYMZ010000049.1 Salmonella enterica strain PNUSAS357524 SAMN35809869-rid18527663.guided.41, whole genome shotgun sequence	4050..4487	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNYMZ010000033.1 Salmonella enterica strain PNUSAS357524 SAMN35809869-rid18527663.denovo.33, whole genome shotgun sequence	14702..15344																																																																	
GCA_032776045.1_PDT001786139.1_genomic.fna	Salmonella_enterica	0.5214	324.467 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYMW010000001.1 Salmonella enterica strain PNUSAS357541 SAMN35809868-rid18518453.denovo.01, whole genome shotgun sequence	591540..591977	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYMW010000038.1 Salmonella enterica strain PNUSAS357541 SAMN35809868-rid18518453.guided.29, whole genome shotgun sequence	5997..6434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNYMW010000015.1 Salmonella enterica strain PNUSAS357541 SAMN35809868-rid18518453.denovo.15, whole genome shotgun sequence	48400..49042	enterobacteriales	IncFII(S)	100	262 / 262	ABNYMW010000015.1 Salmonella enterica strain PNUSAS357541 SAMN35809868-rid18518453.denovo.15, whole genome shotgun sequence	64127..64388																																																avrA	ABNYMW010000002.1	209733..210602	99.885	870	0						
GCA_032776065.1_PDT001786137.1_genomic.fna	Salmonella_enterica	0.5212	682.665 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYNA010000001.1 Salmonella enterica strain PNUSAS357542 SAMN35809871-rid18518443.denovo.01, whole genome shotgun sequence	596591..597028	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYNA010000024.1 Salmonella enterica strain PNUSAS357542 SAMN35809871-rid18518443.guided.16, whole genome shotgun sequence	10891..11328	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYNA010000004.1	181803..182671	99.425	870	0						
GCA_032776085.1_PDT001786136.1_genomic.fna	Salmonella_enterica	0.5225	271.871 KB	6	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_644	3090	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_644	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYNB010000001.1 Salmonella enterica strain PNUSAS357538 SAMN35809874-rid18521313.denovo.01, whole genome shotgun sequence	368588..369025	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYNB010000046.1 Salmonella enterica strain PNUSAS357538 SAMN35809874-rid18521313.guided.36, whole genome shotgun sequence	2438..2875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032776105.1_PDT001786135.1_genomic.fna	Salmonella_enterica	0.5227	410.081 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYNC010000001.1 Salmonella enterica strain PNUSAS357532 SAMN35809875-rid18530563.denovo.01, whole genome shotgun sequence	790281..790718	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYNC010000029.1 Salmonella enterica strain PNUSAS357532 SAMN35809875-rid18530563.guided.18, whole genome shotgun sequence	6026..6463	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.6	643 / 643	ABNYNC010000011.1 Salmonella enterica strain PNUSAS357532 SAMN35809875-rid18530563.denovo.11, whole genome shotgun sequence	137886..138528																																																						avrA	ABNYNC010000004.1	129881..130750	98.966	870	0						
GCA_032776125.1_PDT001786134.1_genomic.fna	Salmonella_enterica	0.5219	639.939 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYND010000001.1 Salmonella enterica strain PNUSAS357523 SAMN35809877-rid18517243.denovo.01, whole genome shotgun sequence	510630..511067	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYND010000036.1 Salmonella enterica strain PNUSAS357523 SAMN35809877-rid18517243.guided.18, whole genome shotgun sequence	3023..3460	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYND010000003.1	544706..545574	99.425	870	0						
GCA_032776145.1_PDT001786133.1_genomic.fna	Salmonella_enterica	0.5219	341.239 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYNF010000001.1 Salmonella enterica strain PNUSAS357533 SAMN35809860-rid18524373.denovo.01, whole genome shotgun sequence	207388..207825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYNF010000053.1 Salmonella enterica strain PNUSAS357533 SAMN35809860-rid18524373.guided.36, whole genome shotgun sequence	1965..2402	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNYNF010000015.1 Salmonella enterica strain PNUSAS357533 SAMN35809860-rid18524373.denovo.15, whole genome shotgun sequence	47342..47984	enterobacteriales	IncFII(S)	100	262 / 262	ABNYNF010000015.1 Salmonella enterica strain PNUSAS357533 SAMN35809860-rid18524373.denovo.15, whole genome shotgun sequence	63069..63330																																																avrA	ABNYNF010000002.1	450793..451662	99.885	870	0						
GCA_032776165.1_PDT001786132.1_genomic.fna	Salmonella_enterica	0.5213	489.784 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYNE010000001.1 Salmonella enterica strain PNUSAS357528 SAMN35809864-rid18517233.denovo.01, whole genome shotgun sequence	170781..171218	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYNE010000024.1 Salmonella enterica strain PNUSAS357528 SAMN35809864-rid18517233.guided.20, whole genome shotgun sequence	1891..2328	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYNE010000014.1 Salmonella enterica strain PNUSAS357528 SAMN35809864-rid18517233.denovo.14, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABNYNE010000017.1 Salmonella enterica strain PNUSAS357528 SAMN35809864-rid18517233.denovo.17, whole genome shotgun sequence	3392..3653																																																avrA	ABNYNE010000002.1	553182..554051	99.54	870	0						
GCA_032776185.1_PDT001786131.1_genomic.fna	Salmonella_enterica	0.5207	758.547 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_852	4595	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	pSL483	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_852	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYNG010000001.1 Salmonella enterica strain PNUSAS357531 SAMN35809861-rid18527653.denovo.01, whole genome shotgun sequence	604594..605031	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYNG010000018.1 Salmonella enterica strain PNUSAS357531 SAMN35809861-rid18527653.guided.09, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	pSL483	97.79	995 / 995	ABNYNG010000011.1 Salmonella enterica strain PNUSAS357531 SAMN35809861-rid18527653.denovo.13, whole genome shotgun sequence	30695..31689																																																						avrA	ABNYNG010000004.1	553651..554520	99.77	870	0						
GCA_032776205.1_PDT001786130.1_genomic.fna	Salmonella_enterica	0.5219	699.691 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYNH010000001.1 Salmonella enterica strain PNUSAS357546 SAMN35809858-rid18527643.denovo.01, whole genome shotgun sequence	510588..511025	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYNH010000020.1 Salmonella enterica strain PNUSAS357546 SAMN35809858-rid18527643.guided.17, whole genome shotgun sequence	119..556	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYNH010000002.1	544607..545475	99.425	870	0						
GCA_032776225.1_PDT001786128.1_genomic.fna	Salmonella_enterica	0.5221	227.886 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYNJ010000003.1 Salmonella enterica strain PNUSAS357540 SAMN35809863-rid18522773.denovo.03, whole genome shotgun sequence	144422..144859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYNJ010000041.1 Salmonella enterica strain PNUSAS357540 SAMN35809863-rid18522773.guided.35, whole genome shotgun sequence	127..564	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032776245.1_PDT001786129.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYNI010000001.1 Salmonella enterica strain PNUSAS357537 SAMN35809865-rid18518433.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYNI010000021.1 Salmonella enterica strain PNUSAS357537 SAMN35809865-rid18518433.guided.15, whole genome shotgun sequence	1591..2028	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYNI010000013.1 Salmonella enterica strain PNUSAS357537 SAMN35809865-rid18518433.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNYNI010000013.1 Salmonella enterica strain PNUSAS357537 SAMN35809865-rid18518433.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNYNI010000002.1	553574..554443	99.54	870	0						
GCA_032776265.1_PDT001786127.1_genomic.fna	Salmonella_enterica	0.5206	695.906 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYNK010000001.1 Salmonella enterica strain PNUSAS357525 SAMN35809866-rid18518423.denovo.01, whole genome shotgun sequence	455486..455923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYNK010000018.1 Salmonella enterica strain PNUSAS357525 SAMN35809866-rid18518423.guided.16, whole genome shotgun sequence	521..958	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032776285.1_PDT001786126.1_genomic.fna	Salmonella_enterica	0.5214	480.985 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYNL010000001.1 Salmonella enterica strain PNUSAS357544 SAMN35809856-rid18521303.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYNL010000027.1 Salmonella enterica strain PNUSAS357544 SAMN35809856-rid18521303.guided.21, whole genome shotgun sequence	3399..3836	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYNL010000014.1 Salmonella enterica strain PNUSAS357544 SAMN35809856-rid18521303.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNYNL010000014.1 Salmonella enterica strain PNUSAS357544 SAMN35809856-rid18521303.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNYNL010000002.1	506088..506957	99.54	870	0						
GCA_032776305.1_PDT001786124.1_genomic.fna	Salmonella_enterica	0.5227	324.769 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYNM010000001.1 Salmonella enterica strain PNUSAS357543 SAMN35809855-rid18517223.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYNM010000034.1 Salmonella enterica strain PNUSAS357543 SAMN35809855-rid18517223.guided.26, whole genome shotgun sequence	1279..1716	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYNM010000005.1	149980..150849	99.655	870	0						
GCA_032776325.1_PDT001786120.1_genomic.fna	Salmonella_enterica	0.5212	416.309 KB	4	aroC_429,dnaN_104,hemD_25,hisD_85,purE_33,sucA_58,thrA_4	2782	4:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_429	dnaN	100	100	dnaN_104	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_33	sucA	100	100	sucA_58	thrA	100	100	thrA_4	4	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Ball		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNYNR010000001.1 Salmonella enterica strain PNUSAS357487 SAMN35809739-rid18527633.denovo.01, whole genome shotgun sequence	1054000..1054437	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNYNR010000019.1 Salmonella enterica strain PNUSAS357487 SAMN35809739-rid18527633.guided.17, whole genome shotgun sequence	16323..16760	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYNR010000003.1	145293..146162	99.54	870	0						
GCA_032776405.1_PDT001786125.1_genomic.fna	Salmonella_enterica	0.5205	485.847 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYNN010000001.1 Salmonella enterica strain PNUSAS357545 SAMN35809853-rid18530553.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYNN010000043.1 Salmonella enterica strain PNUSAS357545 SAMN35809853-rid18530553.guided.17, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.6	643 / 643	ABNYNN010000009.1 Salmonella enterica strain PNUSAS357545 SAMN35809853-rid18530553.denovo.09, whole genome shotgun sequence	29248..29890																																																						avrA	ABNYNN010000003.1	504334..505204	99.196	871	0						
GCA_032776425.1_PDT001786119.1_genomic.fna	Salmonella_enterica	0.5213	333.002 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	10	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYNT010000001.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYNT010000021.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.denovo.24, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYNT010000021.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.denovo.24, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYNT010000031.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.denovo.36, whole genome shotgun sequence	1053..2078	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYNT010000031.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.denovo.36, whole genome shotgun sequence	48..824	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNYNT010000041.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.denovo.51, whole genome shotgun sequence	93..908	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aac(6')-Iaa	97.49	438/438	ABNYNT010000048.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.guided.23, whole genome shotgun sequence	3252..3689	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYNT010000050.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.guided.32, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYNT010000050.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.guided.32, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYNT010000052.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.guided.41, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYNT010000052.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.guided.41, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNYNT010000055.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.guided.49, whole genome shotgun sequence	128..943	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	blaCTX-M-65	100	876/876	ABNYNT010000020.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.denovo.21, whole genome shotgun sequence	49256..50131	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNYNT010000053.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.guided.42, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABNYNT010000037.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.denovo.46, whole genome shotgun sequence	320..736	Fosfomycin	AB522970	fosA3	100	417/417	ABNYNT010000054.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.guided.45, whole genome shotgun sequence	361..777	Fosfomycin	AB522970	floR	98.19	1214/1215	ABNYNT010000030.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.denovo.35, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNYNT010000051.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.guided.37, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNYNT010000021.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.denovo.24, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYNT010000050.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.guided.32, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYNT010000021.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.denovo.24, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYNT010000049.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.guided.30, whole genome shotgun sequence	3172..4371	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYNT010000025.1 Salmonella enterica strain PNUSAS357483 SAMN35809737-rid18519873.denovo.28, whole genome shotgun sequence	9109..9668																																																						avrA	ABNYNT010000003.1	149923..150792	99.655	870	0						
GCA_032776465.1_PDT001786118.1_genomic.fna	Salmonella_enterica	0.5213	371.707 KB	4	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYNU010000001.1 Salmonella enterica strain PNUSAS357485 SAMN35809743-rid18522753.denovo.01, whole genome shotgun sequence	754550..754987	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYNU010000035.1 Salmonella enterica strain PNUSAS357485 SAMN35809743-rid18522753.guided.25, whole genome shotgun sequence	8452..8889	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032776485.1_PDT001786116.1_genomic.fna	Salmonella_enterica	0.5204	478.581 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYNW010000001.1 Salmonella enterica strain PNUSAS357486 SAMN35809740-rid18521293.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYNW010000025.1 Salmonella enterica strain PNUSAS357486 SAMN35809740-rid18521293.guided.19, whole genome shotgun sequence	160..597	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYNW010000012.1 Salmonella enterica strain PNUSAS357486 SAMN35809740-rid18521293.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNYNW010000017.1 Salmonella enterica strain PNUSAS357486 SAMN35809740-rid18521293.denovo.20, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	98.93	374 / 374	ABNYNW010000013.1 Salmonella enterica strain PNUSAS357486 SAMN35809740-rid18521293.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNYNW010000002.1	553684..554553	99.54	870	0						
GCA_032776505.1_PDT001786117.1_genomic.fna	Salmonella_enterica	0.521	489.854 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYNV010000001.1 Salmonella enterica strain PNUSAS357490 SAMN35809741-rid18518413.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYNV010000022.1 Salmonella enterica strain PNUSAS357490 SAMN35809741-rid18518413.guided.17, whole genome shotgun sequence	4962..5399	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYNV010000012.1 Salmonella enterica strain PNUSAS357490 SAMN35809741-rid18518413.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNYNV010000006.1 Salmonella enterica strain PNUSAS357490 SAMN35809741-rid18518413.denovo.06, whole genome shotgun sequence	3406..3667																																																avrA	ABNYNV010000002.1	505310..506179	99.54	870	0						
GCA_032776525.1_PDT001786115.1_genomic.fna	Salmonella_enterica	0.5203	772.461 KB	2	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNYNX010000001.1 Salmonella enterica strain PNUSAS357506 SAMN35809721-rid18530543.denovo.01, whole genome shotgun sequence	1438786..1439223	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNYNX010000018.1 Salmonella enterica strain PNUSAS357506 SAMN35809721-rid18530543.guided.13, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYNX010000003.1	573322..574191	99.31	870	0						
GCA_032776545.1_PDT001786113.1_genomic.fna	Salmonella_enterica	0.5216	446.901 KB	4	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYNZ010000010.1 Salmonella enterica strain PNUSAS357495 SAMN35809727-rid18525973.denovo.10, whole genome shotgun sequence	105202..105639	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYNZ010000026.1 Salmonella enterica strain PNUSAS357495 SAMN35809727-rid18525973.guided.13, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNYNZ010000021.1 Salmonella enterica strain PNUSAS357495 SAMN35809727-rid18525973.denovo.24, whole genome shotgun sequence	2208..2338																																																																	
GCA_032776565.1_PDT001786114.1_genomic.fna	Salmonella_enterica	0.5209	761.796 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	pSL483	aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYNY010000001.1 Salmonella enterica strain PNUSAS357504 SAMN35809735-rid18521283.denovo.01, whole genome shotgun sequence	481939..482376	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYNY010000021.1 Salmonella enterica strain PNUSAS357504 SAMN35809735-rid18521283.guided.16, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	pSL483	98.69	995 / 995	ABNYNY010000014.1 Salmonella enterica strain PNUSAS357504 SAMN35809735-rid18521283.denovo.17, whole genome shotgun sequence	22781..23775																																																						avrA	ABNYNY010000005.1	151330..152199	99.77	870	0						
GCA_032776585.1_PDT001786112.1_genomic.fna	Salmonella_enterica	0.5194	391.77 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYOA010000001.1 Salmonella enterica strain PNUSAS357501 SAMN35809732-rid18517203.denovo.01, whole genome shotgun sequence	563838..564275	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYOA010000029.1 Salmonella enterica strain PNUSAS357501 SAMN35809732-rid18517203.guided.17, whole genome shotgun sequence	26027..26464	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYOA010000011.1	140175..141043	99.195	870	0						
GCA_032776605.1_PDT001786111.1_genomic.fna	Salmonella_enterica	0.5211	489.741 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYOB010000001.1 Salmonella enterica strain PNUSAS357491 SAMN35809728-rid18527623.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYOB010000021.1 Salmonella enterica strain PNUSAS357491 SAMN35809728-rid18527623.guided.17, whole genome shotgun sequence	3303..3740	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYOB010000011.1 Salmonella enterica strain PNUSAS357491 SAMN35809728-rid18527623.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNYOB010000013.1 Salmonella enterica strain PNUSAS357491 SAMN35809728-rid18527623.denovo.15, whole genome shotgun sequence	3393..3654																																																avrA	ABNYOB010000002.1	553126..553995	99.54	870	0						
GCA_032776625.1_PDT001786110.1_genomic.fna	Salmonella_enterica	0.5174	153.424 KB	11	aroC_25,dnaN_82,hemD_325,hisD_22,purE_18,sucA_85,thrA_25	1727	48:d:z6	9	aac(6')-Iaa,aadA5,aadA5,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul2,sul1,sul2,tet(A),tet(A),dfrA17,dfrA17,bleO,bleO	2	gyrA_p.S83F,parC_p.T57S	4	IncFII(SARC14),IncFII(Yp),IncHI2,IncHI2A	aroC	100	100	aroC_25	dnaN	100	100	dnaN_82	hemD	100	100	hemD_325	hisD	100	100	hisD_22	purE	100	100	purE_18	sucA	100	100	sucA_85	thrA	100	100	thrA_25	48	d	z6	Salmonella enterica subspecies salamae (subspecies II)	II 48:d:z6		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABNYOD010000012.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.denovo.12, whole genome shotgun sequence	56068..56505	Amikacin, Tobramycin	NC_003197	aadA5	100	789/789	ABNYOD010000048.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.denovo.49, whole genome shotgun sequence	4996..5784	Spectinomycin, Streptomycin	AF137361	aadA5	100	789/789	ABNYOD010000078.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.guided.57, whole genome shotgun sequence	5037..5825	Spectinomycin, Streptomycin	AF137361	aac(6')-Iaa	94.98	438/438	ABNYOD010000079.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.guided.58, whole genome shotgun sequence	3319..3756	Amikacin, Tobramycin	NC_003197	mph(A)	100	906/906	ABNYOD010000048.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.denovo.49, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	ABNYOD010000078.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.guided.57, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNYOD010000056.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.denovo.60, whole genome shotgun sequence	2842..4055	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNYOD010000081.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.guided.67, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNYOD010000048.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.denovo.49, whole genome shotgun sequence	3610..4449	Sulfamethoxazole	U12338	sul2	100	816/816	ABNYOD010000061.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.denovo.66, whole genome shotgun sequence	329..1144	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNYOD010000078.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.guided.57, whole genome shotgun sequence	3651..4490	Sulfamethoxazole	U12338	sul2	100	816/816	ABNYOD010000080.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.guided.65, whole genome shotgun sequence	1555..2370	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNYOD010000056.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.denovo.60, whole genome shotgun sequence	967..2241	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNYOD010000083.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.guided.69, whole genome shotgun sequence	302..1576	Doxycycline, Tetracycline	AF534183	dfrA17	100	474/474	ABNYOD010000048.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.denovo.49, whole genome shotgun sequence	5915..6388	Trimethoprim	FJ460238	dfrA17	100	474/474	ABNYOD010000078.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.guided.57, whole genome shotgun sequence	5956..6429	Trimethoprim	FJ460238	bleO	100	392/399	ABNYOD010000048.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.denovo.49, whole genome shotgun sequence	9840..10231	Bleomycin	AF051917	bleO	100	392/399	ABNYOD010000082.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.guided.68, whole genome shotgun sequence	175..566	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFII(SARC14)	94.78	441 / 445	ABNYOD010000019.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.denovo.19, whole genome shotgun sequence	37842..38281	enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABNYOD010000019.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.denovo.19, whole genome shotgun sequence	38542..38754		enterobacteriales	IncHI2	100	327 / 327	ABNYOD010000043.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.denovo.44, whole genome shotgun sequence	18998..19324		enterobacteriales	IncHI2A	99.52	630 / 630	ABNYOD010000040.1 Salmonella enterica strain PNUSAS357502 SAMN35809730-rid18529163.denovo.41, whole genome shotgun sequence	5000..5629																																													
GCA_032776645.1_PDT001786109.1_genomic.fna	Salmonella_enterica	0.5146	399.789 KB	5	aroC_33,dnaN_26,hemD_30,hisD_84,purE_21,sucA_87,thrA_28	8433	50:z52:z35	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_84	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	50	z52	z35	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 50:z52:z35		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYOC010000002.1 Salmonella enterica strain PNUSAS357488 SAMN35809725-rid18527613.denovo.02, whole genome shotgun sequence	112938..113375	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.21	359/438	ABNYOC010000038.1 Salmonella enterica strain PNUSAS357488 SAMN35809725-rid18527613.guided.32, whole genome shotgun sequence	1..359	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYOC010000001.1	89814..90683	96.207	870	0						
GCA_032776665.1_PDT001786108.1_genomic.fna	Salmonella_enterica	0.5209	490.138 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYOE010000001.1 Salmonella enterica strain PNUSAS357510 SAMN35809724-rid18524363.denovo.01, whole genome shotgun sequence	162390..162827	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYOE010000019.1 Salmonella enterica strain PNUSAS357510 SAMN35809724-rid18524363.guided.15, whole genome shotgun sequence	18216..18653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYOE010000002.1	585353..586222	99.54	870	0						
GCA_032776685.1_PDT001786107.1_genomic.fna	Salmonella_enterica	0.5211	678.659 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYOF010000001.1 Salmonella enterica strain PNUSAS357505 SAMN35809734-rid18519863.denovo.01, whole genome shotgun sequence	385229..385666	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYOF010000023.1 Salmonella enterica strain PNUSAS357505 SAMN35809734-rid18519863.guided.11, whole genome shotgun sequence	19976..20413	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABNYOF010000017.1 Salmonella enterica strain PNUSAS357505 SAMN35809734-rid18519863.denovo.20, whole genome shotgun sequence	3199..3327																																																						avrA	ABNYOF010000003.1	179249..180117	99.425	870	0						
GCA_032776705.1_PDT001786106.1_genomic.fna	Salmonella_enterica	0.5215	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYOG010000001.1 Salmonella enterica strain PNUSAS357509 SAMN35809722-rid18521273.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYOG010000021.1 Salmonella enterica strain PNUSAS357509 SAMN35809722-rid18521273.guided.15, whole genome shotgun sequence	4912..5349	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYOG010000012.1 Salmonella enterica strain PNUSAS357509 SAMN35809722-rid18521273.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNYOG010000012.1 Salmonella enterica strain PNUSAS357509 SAMN35809722-rid18521273.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABNYOG010000002.1	553636..554505	99.54	870	0						
GCA_032776725.1_PDT001786105.1_genomic.fna	Salmonella_enterica	0.5213	521.585 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNYOH010000001.1 Salmonella enterica strain PNUSAS357500 SAMN35809718-rid18530533.denovo.01, whole genome shotgun sequence	779764..780201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNYOH010000026.1 Salmonella enterica strain PNUSAS357500 SAMN35809718-rid18530533.guided.20, whole genome shotgun sequence	13512..13949	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNYOH010000018.1 Salmonella enterica strain PNUSAS357500 SAMN35809718-rid18530533.denovo.21, whole genome shotgun sequence	239..369																																																						avrA	ABNYOH010000005.1	140114..140983	99.425	870	0						
GCA_032776745.1_PDT001786104.1_genomic.fna	Salmonella_enterica	0.522	151.374 KB	10	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNYOI010000032.1 Salmonella enterica strain PNUSAS357497 SAMN35809719-rid18521263.denovo.33, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNYOI010000058.1 Salmonella enterica strain PNUSAS357497 SAMN35809719-rid18521263.guided.47, whole genome shotgun sequence	2686..3123	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYOI010000006.1	93998..94867	98.966	870	0						
GCA_032776765.1_PDT001786103.1_genomic.fna	Salmonella_enterica	0.5201	490.113 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYOJ010000001.1 Salmonella enterica strain PNUSAS357498 SAMN35809716-rid18525963.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYOJ010000023.1 Salmonella enterica strain PNUSAS357498 SAMN35809716-rid18525963.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYOJ010000012.1 Salmonella enterica strain PNUSAS357498 SAMN35809716-rid18525963.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNYOJ010000016.1 Salmonella enterica strain PNUSAS357498 SAMN35809716-rid18525963.denovo.19, whole genome shotgun sequence	3415..3676		enterobacteriales	IncX1	98.93	374 / 374	ABNYOJ010000013.1 Salmonella enterica strain PNUSAS357498 SAMN35809716-rid18525963.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNYOJ010000002.1	553684..554553	99.54	870	0						
GCA_032776795.1_PDT001786102.1_genomic.fna	Salmonella_enterica	0.5215	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYOL010000001.1 Salmonella enterica strain PNUSAS357496 SAMN35809731-rid18518403.denovo.01, whole genome shotgun sequence	790286..790723	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYOL010000023.1 Salmonella enterica strain PNUSAS357496 SAMN35809731-rid18518403.guided.11, whole genome shotgun sequence	34271..34708	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYOL010000002.1	132744..133613	98.966	870	0						
GCA_032776905.1_PDT001786097.1_genomic.fna	Salmonella_enterica	0.5214	376.323 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYOP010000001.1 Salmonella enterica strain PNUSAS357480 SAMN35809578-rid18519853.denovo.01, whole genome shotgun sequence	189572..190009	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYOP010000029.1 Salmonella enterica strain PNUSAS357480 SAMN35809578-rid18519853.guided.23, whole genome shotgun sequence	10848..11285	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYOP010000008.1	175109..175978	99.54	870	0						
GCA_032776925.1_PDT001786096.1_genomic.fna	Salmonella_enterica	0.5213	400.829 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYOR010000001.1 Salmonella enterica strain PNUSAS357481 SAMN35809576-rid18522743.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYOR010000022.1 Salmonella enterica strain PNUSAS357481 SAMN35809576-rid18522743.guided.17, whole genome shotgun sequence	4035..4472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYOR010000013.1 Salmonella enterica strain PNUSAS357481 SAMN35809576-rid18522743.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNYOR010000013.1 Salmonella enterica strain PNUSAS357481 SAMN35809576-rid18522743.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNYOR010000002.1	553636..554505	99.54	870	0						
GCA_032777165.1_PDT001786084.1_genomic.fna	Salmonella_enterica	0.5192	208.652 KB	7	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYPB010000001.1 Salmonella enterica strain PNUSAS357383 SAMN35809525-rid18522733.denovo.01, whole genome shotgun sequence	453879..454316	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYPB010000054.1 Salmonella enterica strain PNUSAS357383 SAMN35809525-rid18522733.guided.47, whole genome shotgun sequence	1021..1458	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNYPB010000020.1 Salmonella enterica strain PNUSAS357383 SAMN35809525-rid18522733.denovo.20, whole genome shotgun sequence	25639..26281																																																						avrA	ABNYPB010000012.1	139987..140856	99.425	870	0						
GCA_032777285.1_PDT001786070.1_genomic.fna	Salmonella_enterica	0.5132	149.853 KB	8	aroC_767*,dnaN_24,hemD_75,hisD_24,purE_263,sucA_519,thrA_131	Unknown	35:z4,z23,z32:-	0		1	parC_p.T57S	0		aroC	99.4011976047904	100	aroC_767*	dnaN	100	100	dnaN_24	hemD	100	100	hemD_75	hisD	100	100	hisD_24	purE	100	100	purE_263	sucA	100	100	sucA_519	thrA	100	100	thrA_131	35	z4,z23,z32	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 35:z4,z23,z32:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032777325.1_PDT001786069.1_genomic.fna	Salmonella_enterica	0.5198	402.104 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYPK010000001.1 Salmonella enterica strain PNUSAS357380 SAMN35809527-rid18531723.denovo.01, whole genome shotgun sequence	653921..654358	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYPK010000033.1 Salmonella enterica strain PNUSAS357380 SAMN35809527-rid18531723.guided.22, whole genome shotgun sequence	2150..2587	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYPK010000003.1	508654..509522	99.425	870	0						
GCA_032777345.1_PDT001786066.1_genomic.fna	Salmonella_enterica	0.5215	390.838 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYPO010000001.1 Salmonella enterica strain PNUSAS357280 SAMN35805022-rid18524293.denovo.01, whole genome shotgun sequence	560694..561131	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYPO010000030.1 Salmonella enterica strain PNUSAS357280 SAMN35805022-rid18524293.guided.18, whole genome shotgun sequence	12649..13086	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYPO010000010.1	140169..141037	99.195	870	0						
GCA_032777405.1_PDT001786064.1_genomic.fna	Salmonella_enterica	0.5211	322.099 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYPP010000001.1 Salmonella enterica strain PNUSAS357149 SAMN35802856-rid18522713.denovo.01, whole genome shotgun sequence	479290..479727	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYPP010000043.1 Salmonella enterica strain PNUSAS357149 SAMN35802856-rid18522713.guided.14, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNYPP010000016.1 Salmonella enterica strain PNUSAS357149 SAMN35802856-rid18522713.denovo.17, whole genome shotgun sequence	48441..49083	enterobacteriales	IncFII(S)	100	262 / 262	ABNYPP010000016.1 Salmonella enterica strain PNUSAS357149 SAMN35802856-rid18522713.denovo.17, whole genome shotgun sequence	64168..64429																																																avrA	ABNYPP010000004.1	174779..175648	99.885	870	0						
GCA_032777425.1_PDT001786063.1_genomic.fna	Salmonella_enterica	0.5214	203.403 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYPQ010000001.1 Salmonella enterica strain PNUSAS357261 SAMN35803724-rid18525913.denovo.01, whole genome shotgun sequence	310491..310928	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.37	419/438	ABNYPQ010000060.1 Salmonella enterica strain PNUSAS357261 SAMN35803724-rid18525913.guided.41, whole genome shotgun sequence	1..419	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNYPQ010000016.1 Salmonella enterica strain PNUSAS357261 SAMN35803724-rid18525913.denovo.16, whole genome shotgun sequence	88650..89292																																																																	
GCA_032777445.1_PDT001941695.1_genomic.fna	Salmonella_enterica	0.5222	682.831 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYPR010000001.1 Salmonella enterica strain PNUSAS392285 SAMN37855484-rid19847313.denovo.01, whole genome shotgun sequence	596593..597030	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYPR010000018.1 Salmonella enterica strain PNUSAS392285 SAMN37855484-rid19847313.guided.15, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYPR010000002.1	544276..545144	99.425	870	0						
GCA_032777465.1_PDT001941676.1_genomic.fna	Salmonella_enterica	0.5214	696.793 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYPT010000001.1 Salmonella enterica strain PNUSAS392238 SAMN37855418-rid19847183.denovo.01, whole genome shotgun sequence	774368..774805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYPT010000027.1 Salmonella enterica strain PNUSAS392238 SAMN37855418-rid19847183.guided.20, whole genome shotgun sequence	2627..3064	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYPT010000018.1 Salmonella enterica strain PNUSAS392238 SAMN37855418-rid19847183.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNYPT010000020.1 Salmonella enterica strain PNUSAS392238 SAMN37855418-rid19847183.denovo.22, whole genome shotgun sequence	3411..3672																																																avrA	ABNYPT010000002.1	553642..554511	99.54	870	0						
GCA_032777485.1_PDT001941690.1_genomic.fna	Salmonella_enterica	0.5216	491.124 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYPS010000001.1 Salmonella enterica strain PNUSAS392254 SAMN37855468-rid19847283.denovo.01, whole genome shotgun sequence	376986..377423	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYPS010000024.1 Salmonella enterica strain PNUSAS392254 SAMN37855468-rid19847283.guided.20, whole genome shotgun sequence	5995..6432	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYPS010000003.1	544499..545367	99.425	870	0						
GCA_032777505.1_PDT001941605.1_genomic.fna	Salmonella_enterica	0.5227	516.854 KB	3	aroC_543,dnaN_69,hemD_101,hisD_12,purE_370,sucA_130,thrA_347	2553	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_543	dnaN	100	100	dnaN_69	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_370	sucA	100	100	sucA_130	thrA	100	100	thrA_347	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNYPV010000001.1 Salmonella enterica strain PNUSAS391290 SAMN37855300-rid19846723.denovo.01, whole genome shotgun sequence	636260..636697	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNYPV010000024.1 Salmonella enterica strain PNUSAS391290 SAMN37855300-rid19846723.guided.16, whole genome shotgun sequence	9224..9661	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYPV010000002.1	514136..515005	99.31	870	0						
GCA_032777515.1_PDT001941619.1_genomic.fna	Salmonella_enterica	0.5216	577.271 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYPW010000001.1 Salmonella enterica strain PNUSAS391318 SAMN37855287-rid19846813.denovo.01, whole genome shotgun sequence	596146..596583	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYPW010000035.1 Salmonella enterica strain PNUSAS391318 SAMN37855287-rid19846813.guided.14, whole genome shotgun sequence	13440..13877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYPW010000002.1	498760..499628	99.425	870	0						
GCA_032777545.1_PDT001941604.1_genomic.fna	Salmonella_enterica	0.5215	282.345 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,sul2,tet(B),tet(B)	0		2	Col440I,ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYPX010000001.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.denovo.01, whole genome shotgun sequence	578853..579290	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYPX010000033.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.denovo.39, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYPX010000033.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.denovo.39, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNYPX010000047.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.guided.27, whole genome shotgun sequence	9235..9672	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	837/837	ABNYPX010000050.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.guided.37, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYPX010000050.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.guided.37, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNYPX010000051.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.guided.38, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYPX010000051.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.guided.38, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNYPX010000039.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.denovo.47, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNYPX010000053.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.guided.46, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNYPX010000033.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.denovo.39, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNYPX010000050.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.guided.37, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNYPX010000051.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.guided.38, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNYPX010000027.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.denovo.29, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYPX010000052.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.guided.41, whole genome shotgun sequence	501..1706	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																			enterobacteriales	Col440I	93.64	110 / 114	ABNYPX010000038.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.denovo.45, whole genome shotgun sequence	1566..1675	enterobacteriales	ColRNAI	90.08	131 / 130	ABNYPX010000032.1 Salmonella enterica strain PNUSAS391364 SAMN37855290-rid19846713.denovo.36, whole genome shotgun sequence	3981..4111																																																avrA	ABNYPX010000002.1	508737..509606	99.885	870	0						
GCA_032777565.1_PDT001941599.1_genomic.fna	Salmonella_enterica	0.5222	433.282 KB	5	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYPY010000002.1 Salmonella enterica strain PNUSAS391312 SAMN37855283-rid19846683.denovo.02, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYPY010000025.1 Salmonella enterica strain PNUSAS391312 SAMN37855283-rid19846683.guided.16, whole genome shotgun sequence	44304..44741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYPY010000014.1	37198..38067	99.425	870	0						
GCA_032777585.1_PDT001941570.1_genomic.fna	Salmonella_enterica	0.5231	396.328 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_12,sucA_13,thrA_4	195	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYQA010000008.1 Salmonella enterica strain PNUSAS391300 SAMN37855238-rid19846533.denovo.08, whole genome shotgun sequence	153895..154332	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYQA010000028.1 Salmonella enterica strain PNUSAS391300 SAMN37855238-rid19846533.guided.18, whole genome shotgun sequence	9232..9669	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032777605.1_PDT001941597.1_genomic.fna	Salmonella_enterica	0.5213	699.695 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYPZ010000001.1 Salmonella enterica strain PNUSAS391353 SAMN37855274-rid19846673.denovo.01, whole genome shotgun sequence	399230..399667	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYPZ010000023.1 Salmonella enterica strain PNUSAS391353 SAMN37855274-rid19846673.guided.17, whole genome shotgun sequence	9216..9653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYPZ010000002.1	544607..545475	99.425	870	0						
GCA_032777625.1_PDT001941667.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYPU010000001.1 Salmonella enterica strain PNUSAS392237 SAMN37855429-rid19847133.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYPU010000022.1 Salmonella enterica strain PNUSAS392237 SAMN37855429-rid19847133.guided.15, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABNYPU010000002.1	553636..554505	99.54	870	0						
GCA_032777645.1_PDT001941563.1_genomic.fna	Salmonella_enterica	0.5221	396.202 KB	4	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	1	parC_p.T57S	1	IncFII(pHN7A8),IncFII(pHN7A8)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYQB010000001.1 Salmonella enterica strain PNUSAS391374 SAMN37855216-rid19846473.denovo.01, whole genome shotgun sequence	336109..336546	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYQB010000034.1 Salmonella enterica strain PNUSAS391374 SAMN37855216-rid19846473.guided.30, whole genome shotgun sequence	2342..2779	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNYQB010000018.1 Salmonella enterica strain PNUSAS391374 SAMN37855216-rid19846473.denovo.18, whole genome shotgun sequence	20408..21553	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNYQB010000031.1 Salmonella enterica strain PNUSAS391374 SAMN37855216-rid19846473.guided.22, whole genome shotgun sequence	11120..12265	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pHN7A8)	98.08	260 / 260	ABNYQB010000018.1 Salmonella enterica strain PNUSAS391374 SAMN37855216-rid19846473.denovo.18, whole genome shotgun sequence	26871..27130	enterobacteriales	IncFII(pHN7A8)	98.08	260 / 260	ABNYQB010000031.1 Salmonella enterica strain PNUSAS391374 SAMN37855216-rid19846473.guided.22, whole genome shotgun sequence	5543..5802																																																avrA	ABNYQB010000003.1	508896..509765	99.77	870	0						
GCA_032777665.1_PDT001941555.1_genomic.fna	Salmonella_enterica	0.5208	682.676 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYQD010000001.1 Salmonella enterica strain PNUSAS391367 SAMN37855215-rid19846423.denovo.01, whole genome shotgun sequence	630770..631207	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYQD010000021.1 Salmonella enterica strain PNUSAS391367 SAMN37855215-rid19846423.guided.16, whole genome shotgun sequence	9273..9710	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYQD010000004.1	556162..557030	99.425	870	0						
GCA_032777685.1_PDT001941539.1_genomic.fna	Salmonella_enterica	0.5214	478.479 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYQC010000001.1 Salmonella enterica strain PNUSAS392094 SAMN37855164-rid19846323.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYQC010000030.1 Salmonella enterica strain PNUSAS392094 SAMN37855164-rid19846323.guided.26, whole genome shotgun sequence	3165..3602	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYQC010000019.1 Salmonella enterica strain PNUSAS392094 SAMN37855164-rid19846323.denovo.19, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABNYQC010000021.1 Salmonella enterica strain PNUSAS392094 SAMN37855164-rid19846323.denovo.22, whole genome shotgun sequence	3376..3637																																																avrA	ABNYQC010000002.1	553678..554547	99.54	870	0						
GCA_032777705.1_PDT001941548.1_genomic.fna	Salmonella_enterica	0.5198	695.775 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYQE010000001.1 Salmonella enterica strain PNUSAS391348 SAMN37855204-rid19846373.denovo.01, whole genome shotgun sequence	642276..642713	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYQE010000023.1 Salmonella enterica strain PNUSAS391348 SAMN37855204-rid19846373.guided.12, whole genome shotgun sequence	9216..9653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032777725.1_PDT001941538.1_genomic.fna	Salmonella_enterica	0.5216	365.034 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYQF010000001.1 Salmonella enterica strain PNUSAS391372 SAMN37855157-rid19846313.denovo.01, whole genome shotgun sequence	415432..415869	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYQF010000032.1 Salmonella enterica strain PNUSAS391372 SAMN37855157-rid19846313.guided.23, whole genome shotgun sequence	10387..10824	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYQF010000011.1	60966..61835	99.54	870	0						
GCA_032777745.1_PDT001941535.1_genomic.fna	Salmonella_enterica	0.5219	518.992 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYQG010000001.1 Salmonella enterica strain PNUSAS391363 SAMN37855159-rid19846303.denovo.01, whole genome shotgun sequence	639284..639721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYQG010000033.1 Salmonella enterica strain PNUSAS391363 SAMN37855159-rid19846303.guided.13, whole genome shotgun sequence	23184..23621	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYQG010000002.1	498766..499634	99.425	870	0						
GCA_032777765.1_PDT001941533.1_genomic.fna	Salmonella_enterica	0.5218	272.598 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYQI010000001.1 Salmonella enterica strain PNUSAS392096 SAMN37855151-rid19846283.denovo.01, whole genome shotgun sequence	458078..458515	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYQI010000050.1 Salmonella enterica strain PNUSAS392096 SAMN37855151-rid19846283.guided.34, whole genome shotgun sequence	4269..4706	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNYQI010000025.1 Salmonella enterica strain PNUSAS392096 SAMN37855151-rid19846283.denovo.25, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNYQI010000025.1 Salmonella enterica strain PNUSAS392096 SAMN37855151-rid19846283.denovo.25, whole genome shotgun sequence	9325..9586																																																avrA	ABNYQI010000007.1	94133..95002	99.885	870	0						
GCA_032777805.1_PDT001786062.1_genomic.fna	Salmonella_enterica	0.522	547.902 KB	3	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYQK010000001.1 Salmonella enterica strain PNUSAS357081 SAMN35802802-rid18518363.denovo.01, whole genome shotgun sequence	136547..136984	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYQK010000020.1 Salmonella enterica strain PNUSAS357081 SAMN35802802-rid18518363.guided.13, whole genome shotgun sequence	32235..32672	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYQK010000002.1	509305..510171	99.08	870	0						
GCA_032777845.1_PDT001786060.1_genomic.fna	Salmonella_enterica	0.522	719.637 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYQL010000001.1 Salmonella enterica strain PNUSAS357249 SAMN35803779-rid18529113.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYQL010000019.1 Salmonella enterica strain PNUSAS357249 SAMN35803779-rid18529113.guided.13, whole genome shotgun sequence	17027..17464	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYQL010000002.1	514320..515190	99.656	871	0						
GCA_032777945.1_PDT001786056.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYQP010000001.1 Salmonella enterica strain PNUSAS357277 SAMN35803679-rid18525883.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYQP010000025.1 Salmonella enterica strain PNUSAS357277 SAMN35803679-rid18525883.guided.14, whole genome shotgun sequence	26905..27342	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYQP010000012.1 Salmonella enterica strain PNUSAS357277 SAMN35803679-rid18525883.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNYQP010000016.1 Salmonella enterica strain PNUSAS357277 SAMN35803679-rid18525883.denovo.19, whole genome shotgun sequence	3392..3653																																																avrA	ABNYQP010000002.1	553636..554505	99.54	870	0						
GCA_032777965.1_PDT001786051.1_genomic.fna	Salmonella_enterica	0.5234	293.195 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYQR010000001.1 Salmonella enterica strain PNUSAS357258 SAMN35803721-rid18522693.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYQR010000043.1 Salmonella enterica strain PNUSAS357258 SAMN35803721-rid18522693.guided.35, whole genome shotgun sequence	847..1284	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032778025.1_PDT001786046.1_genomic.fna	Salmonella_enterica	0.5216	762.486 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYQV010000001.1 Salmonella enterica strain PNUSAS357272 SAMN35803735-rid18525873.denovo.01, whole genome shotgun sequence	482127..482564	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYQV010000015.1 Salmonella enterica strain PNUSAS357272 SAMN35803735-rid18525873.guided.09, whole genome shotgun sequence	36026..36463	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYQV010000007.1	174128..174997	99.77	870	0						
GCA_032778045.1_PDT001786047.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYQT010000001.1 Salmonella enterica strain PNUSAS357152 SAMN35802871-rid18517183.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYQT010000022.1 Salmonella enterica strain PNUSAS357152 SAMN35802871-rid18517183.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYQT010000012.1 Salmonella enterica strain PNUSAS357152 SAMN35802871-rid18517183.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNYQT010000012.1 Salmonella enterica strain PNUSAS357152 SAMN35802871-rid18517183.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNYQT010000002.1	553636..554505	99.54	870	0						
GCA_032778065.1_PDT001786045.1_genomic.fna	Salmonella_enterica	0.5221	731.648 KB	2	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYQW010000001.1 Salmonella enterica strain PNUSAS357252 SAMN35803782-rid18527533.denovo.01, whole genome shotgun sequence	624783..625220	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYQW010000016.1 Salmonella enterica strain PNUSAS357252 SAMN35803782-rid18527533.guided.12, whole genome shotgun sequence	5159..5596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032778085.1_PDT001786044.1_genomic.fna	Salmonella_enterica	0.5209	319.16 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYQX010000001.1 Salmonella enterica strain PNUSAS357283 SAMN35805021-rid18522683.denovo.01, whole genome shotgun sequence	560694..561131	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYQX010000030.1 Salmonella enterica strain PNUSAS357283 SAMN35805021-rid18522683.guided.17, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYQX010000012.1	140181..141049	99.195	870	0						
GCA_032778125.1_PDT001786042.1_genomic.fna	Salmonella_enterica	0.5221	263.402 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,catA1,catA1,catA1,sul1,sul2,sul2,sul1,tet(B),tet(B),dfrA7,dfrA7	1	gyrA_p.S83Y	1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYQZ010000008.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.denovo.08, whole genome shotgun sequence	78481..78918	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYQZ010000034.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.denovo.36, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYQZ010000034.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.denovo.36, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNYQZ010000053.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.guided.35, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYQZ010000053.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.guided.35, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNYQZ010000055.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.guided.38, whole genome shotgun sequence	2394..2831	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNYQZ010000038.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.denovo.47, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNYQZ010000060.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.guided.46, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	ABNYQZ010000031.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.denovo.32, whole genome shotgun sequence	947..1606	Chloramphenicol	V00622	catA1	99.85	660/660	ABNYQZ010000058.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.guided.42, whole genome shotgun sequence	263..922	Chloramphenicol	V00622	catA1	99.7	660/660	ABNYQZ010000059.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.guided.43, whole genome shotgun sequence	263..922	Chloramphenicol	V00622	sul1	100	840/840	ABNYQZ010000033.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.denovo.34, whole genome shotgun sequence	864..1703	Sulfamethoxazole	U12338	sul2	100	816/816	ABNYQZ010000034.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.denovo.36, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	FN995456	sul2	100	816/816	ABNYQZ010000053.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.guided.35, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	FN995456	sul1	100	840/840	ABNYQZ010000056.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.guided.39, whole genome shotgun sequence	1208..2047	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABNYQZ010000029.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.denovo.30, whole genome shotgun sequence	423..1628	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYQZ010000054.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.guided.37, whole genome shotgun sequence	2057..3262	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA7	100	474/474	ABNYQZ010000033.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.denovo.34, whole genome shotgun sequence	2274..2747	Trimethoprim	AB161450	dfrA7	100	474/474	ABNYQZ010000056.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.guided.39, whole genome shotgun sequence	164..637	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																			gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNYQZ010000022.1 Salmonella enterica strain PNUSAS357133 SAMN35802848-rid18518343.denovo.22, whole genome shotgun sequence	47369..47510																																																						avrA	ABNYQZ010000001.1	506029..506898	99.54	870	0						
GCA_032778165.1_PDT001786039.1_genomic.fna	Salmonella_enterica	0.5201	371.106 KB	6	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYRB010000001.1 Salmonella enterica strain PNUSAS357274 SAMN35803676-rid18521213.denovo.001, whole genome shotgun sequence	355195..355632	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYRB010000115.1 Salmonella enterica strain PNUSAS357274 SAMN35803676-rid18521213.guided.040, whole genome shotgun sequence	3409..3846	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNYRB010000027.1 Salmonella enterica strain PNUSAS357274 SAMN35803676-rid18521213.denovo.028, whole genome shotgun sequence	11615..12257																																																						avrA	ABNYRB010000004.1	150725..151594	99.77	870	0						
GCA_032778205.1_PDT001786037.1_genomic.fna	Salmonella_enterica	0.5209	278.344 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		3	Col(pHAD28),IncQ1,IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYRD010000001.1 Salmonella enterica strain PNUSAS357270 SAMN35803733-rid18518333.denovo.01, whole genome shotgun sequence	145429..145866	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYRD010000040.1 Salmonella enterica strain PNUSAS357270 SAMN35803733-rid18518333.denovo.41, whole genome shotgun sequence	808..1644	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYRD010000040.1 Salmonella enterica strain PNUSAS357270 SAMN35803733-rid18518333.denovo.41, whole genome shotgun sequence	1644..2447	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNYRD010000054.1 Salmonella enterica strain PNUSAS357270 SAMN35803733-rid18518333.guided.42, whole genome shotgun sequence	2554..2991	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYRD010000055.1 Salmonella enterica strain PNUSAS357270 SAMN35803733-rid18518333.guided.43, whole genome shotgun sequence	2019..2855	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYRD010000055.1 Salmonella enterica strain PNUSAS357270 SAMN35803733-rid18518333.guided.43, whole genome shotgun sequence	1216..2019	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNYRD010000041.1 Salmonella enterica strain PNUSAS357270 SAMN35803733-rid18518333.denovo.46, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNYRD010000058.1 Salmonella enterica strain PNUSAS357270 SAMN35803733-rid18518333.guided.47, whole genome shotgun sequence	363..1223	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNYRD010000040.1 Salmonella enterica strain PNUSAS357270 SAMN35803733-rid18518333.denovo.41, whole genome shotgun sequence	2508..3323	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNYRD010000055.1 Salmonella enterica strain PNUSAS357270 SAMN35803733-rid18518333.guided.43, whole genome shotgun sequence	340..1155	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNYRD010000029.1 Salmonella enterica strain PNUSAS357270 SAMN35803733-rid18518333.denovo.29, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYRD010000057.1 Salmonella enterica strain PNUSAS357270 SAMN35803733-rid18518333.guided.45, whole genome shotgun sequence	494..1699	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNYRD010000034.1 Salmonella enterica strain PNUSAS357270 SAMN35803733-rid18518333.denovo.34, whole genome shotgun sequence	1326..1445	enterobacteriales	IncQ1	100	796 / 796	ABNYRD010000032.1 Salmonella enterica strain PNUSAS357270 SAMN35803733-rid18518333.denovo.32, whole genome shotgun sequence	292..1087		enterobacteriales	IncY	99.74	765 / 765	ABNYRD010000015.1 Salmonella enterica strain PNUSAS357270 SAMN35803733-rid18518333.denovo.15, whole genome shotgun sequence	38912..39676																																									avrA	ABNYRD010000002.1	539931..540800	99.885	870	0						
GCA_032778225.1_PDT001786036.1_genomic.fna	Salmonella_enterica	0.5205	269.511 KB	4	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	5	aac(6')-Iaa,aadA2b,aadA2b,aadA2b,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNYRE010000001.1 Salmonella enterica strain PNUSAS357267 SAMN35803730-rid18525863.denovo.01, whole genome shotgun sequence	802768..803205	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNYRE010000019.1 Salmonella enterica strain PNUSAS357267 SAMN35803730-rid18525863.denovo.19, whole genome shotgun sequence	54520..55299	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABNYRE010000049.1 Salmonella enterica strain PNUSAS357267 SAMN35803730-rid18525863.guided.41, whole genome shotgun sequence	112..891	Spectinomycin, Streptomycin	D43625	aadA2b	99.74	780/780	ABNYRE010000050.1 Salmonella enterica strain PNUSAS357267 SAMN35803730-rid18525863.guided.42, whole genome shotgun sequence	112..891	Spectinomycin, Streptomycin	D43625	fosA7	97.16	423/423	ABNYRE010000002.1 Salmonella enterica strain PNUSAS357267 SAMN35803730-rid18525863.denovo.02, whole genome shotgun sequence	312782..313204	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNYRE010000047.1 Salmonella enterica strain PNUSAS357267 SAMN35803730-rid18525863.guided.34, whole genome shotgun sequence	21..443	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNYRE010000019.1 Salmonella enterica strain PNUSAS357267 SAMN35803730-rid18525863.denovo.19, whole genome shotgun sequence	55804..56643	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYRE010000048.1 Salmonella enterica strain PNUSAS357267 SAMN35803730-rid18525863.guided.35, whole genome shotgun sequence	1131..1970	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYRE010000026.1 Salmonella enterica strain PNUSAS357267 SAMN35803730-rid18525863.denovo.26, whole genome shotgun sequence	7437..8636	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYRE010000046.1 Salmonella enterica strain PNUSAS357267 SAMN35803730-rid18525863.guided.32, whole genome shotgun sequence	1609..2808	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYRE010000004.1	39470..40339	99.655	870	0						
GCA_032778245.1_PDT001786035.1_genomic.fna	Salmonella_enterica	0.5221	487.979 KB	3	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYRF010000001.1 Salmonella enterica strain PNUSAS357078 SAMN35802800-rid18529093.denovo.01, whole genome shotgun sequence	541500..541937	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYRF010000022.1 Salmonella enterica strain PNUSAS357078 SAMN35802800-rid18529093.guided.16, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYRF010000003.1	140424..141293	98.966	870	0						
GCA_032778285.1_PDT001786030.1_genomic.fna	Salmonella_enterica	0.5209	489.885 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYRJ010000001.1 Salmonella enterica strain PNUSAS357144 SAMN35802876-rid18530473.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYRJ010000021.1 Salmonella enterica strain PNUSAS357144 SAMN35802876-rid18530473.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNYRJ010000013.1 Salmonella enterica strain PNUSAS357144 SAMN35802876-rid18530473.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNYRJ010000013.1 Salmonella enterica strain PNUSAS357144 SAMN35802876-rid18530473.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNYRJ010000002.1	553499..554368	99.54	870	0						
GCA_032778305.1_PDT001786033.1_genomic.fna	Salmonella_enterica	0.5226	416.621 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYRH010000001.1 Salmonella enterica strain PNUSAS357136 SAMN35802845-rid18529083.denovo.01, whole genome shotgun sequence	77774..78211	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYRH010000030.1 Salmonella enterica strain PNUSAS357136 SAMN35802845-rid18529083.guided.23, whole genome shotgun sequence	884..1321	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYRH010000002.1	146984..147853	98.966	870	0						
GCA_032778345.1_PDT001786027.1_genomic.fna	Salmonella_enterica	0.5213	489.376 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYRL010000001.1 Salmonella enterica strain PNUSAS357139 SAMN35802842-rid18518323.denovo.01, whole genome shotgun sequence	547237..547674	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYRL010000029.1 Salmonella enterica strain PNUSAS357139 SAMN35802842-rid18518323.guided.22, whole genome shotgun sequence	708..1145	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYRL010000013.1 Salmonella enterica strain PNUSAS357139 SAMN35802842-rid18518323.denovo.13, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNYRL010000017.1 Salmonella enterica strain PNUSAS357139 SAMN35802842-rid18518323.denovo.19, whole genome shotgun sequence	3446..3707																																																avrA	ABNYRL010000002.1	140715..141584	99.54	870	0						
GCA_032778385.1_PDT001786026.1_genomic.fna	Salmonella_enterica	0.5209	550.093 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYRM010000004.1 Salmonella enterica strain PNUSAS357340 SAMN35806080-rid18525853.denovo.04, whole genome shotgun sequence	414226..414663	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYRM010000022.1 Salmonella enterica strain PNUSAS357340 SAMN35806080-rid18525853.guided.19, whole genome shotgun sequence	5968..6405	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032778425.1_PDT001786019.1_genomic.fna	Salmonella_enterica	0.5218	265.15 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYRO010000001.1 Salmonella enterica strain FDA1123755-C001-001 SAMN35806079-rid18522673.denovo.01, whole genome shotgun sequence	727905..728342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYRO010000031.1 Salmonella enterica strain FDA1123755-C001-001 SAMN35806079-rid18522673.guided.24, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYRO010000002.1	550819..551688	99.195	870	0						
GCA_032778445.1_PDT001941692.1_genomic.fna	Salmonella_enterica	0.5199	243.489 KB	6	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	6	aac(6')-Iaa,aac(6')-Iaa,floR,floR,qnrS1,qnrS1,sul2,sul2,tet(M),tet(A),tet(M),tet(A)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNYRP010000002.1 Salmonella enterica strain PNUSAS392269 SAMN37855461-rid19847303.denovo.02, whole genome shotgun sequence	157468..157905	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNYRP010000062.1 Salmonella enterica strain PNUSAS392269 SAMN37855461-rid19847303.guided.36, whole genome shotgun sequence	3242..3679	Amikacin, Tobramycin	NC_003197	floR	98.11	1214/1215	ABNYRP010000041.1 Salmonella enterica strain PNUSAS392269 SAMN37855461-rid19847303.denovo.48, whole genome shotgun sequence	1107..2320	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNYRP010000065.1 Salmonella enterica strain PNUSAS392269 SAMN37855461-rid19847303.guided.47, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABNYRP010000039.1 Salmonella enterica strain PNUSAS392269 SAMN37855461-rid19847303.denovo.43, whole genome shotgun sequence	131..787	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABNYRP010000064.1 Salmonella enterica strain PNUSAS392269 SAMN37855461-rid19847303.guided.46, whole genome shotgun sequence	2760..3416	Ciprofloxacin	AB187515	sul2	100	816/816	ABNYRP010000043.1 Salmonella enterica strain PNUSAS392269 SAMN37855461-rid19847303.denovo.51, whole genome shotgun sequence	329..1144	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNYRP010000066.1 Salmonella enterica strain PNUSAS392269 SAMN37855461-rid19847303.guided.49, whole genome shotgun sequence	1898..2713	Sulfamethoxazole	AY034138	tet(M)	96.15	1920/1920	ABNYRP010000029.1 Salmonella enterica strain PNUSAS392269 SAMN37855461-rid19847303.denovo.31, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(A)	99.92	1200/1200	ABNYRP010000040.1 Salmonella enterica strain PNUSAS392269 SAMN37855461-rid19847303.denovo.45, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	ABNYRP010000061.1 Salmonella enterica strain PNUSAS392269 SAMN37855461-rid19847303.guided.33, whole genome shotgun sequence	17..1936	Doxycycline, Tetracycline, Minocycline	X04388	tet(A)	99.92	1200/1200	ABNYRP010000063.1 Salmonella enterica strain PNUSAS392269 SAMN37855461-rid19847303.guided.44, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNYRP010000035.1 Salmonella enterica strain PNUSAS392269 SAMN37855461-rid19847303.denovo.39, whole genome shotgun sequence	3134..3264																																																						avrA	ABNYRP010000016.1	116097..116966	99.195	870	0						
GCA_032778465.1_PDT001941685.1_genomic.fna	Salmonella_enterica	0.5202	537.34 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYRU010000001.1 Salmonella enterica strain PNUSAS392258 SAMN37855473-rid19847243.denovo.01, whole genome shotgun sequence	1040150..1040587	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYRU010000035.1 Salmonella enterica strain PNUSAS392258 SAMN37855473-rid19847243.guided.23, whole genome shotgun sequence	6522..6959	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYRU010000001.1	556203..557071	99.425	870	0						
GCA_032778485.1_PDT001941687.1_genomic.fna	Salmonella_enterica	0.5228	397.497 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYRQ010000001.1 Salmonella enterica strain PNUSAS392256 SAMN37855474-rid19847263.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYRQ010000032.1 Salmonella enterica strain PNUSAS392256 SAMN37855474-rid19847263.guided.18, whole genome shotgun sequence	6034..6471	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYRQ010000007.1	129887..130756	98.966	870	0						
GCA_032778505.1_PDT001941681.1_genomic.fna	Salmonella_enterica	0.5209	158.376 KB	9	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNYRR010000009.1 Salmonella enterica strain PNUSAS392268 SAMN37855463-rid19847223.denovo.09, whole genome shotgun sequence	29911..30345	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNYRR010000059.1 Salmonella enterica strain PNUSAS392268 SAMN37855463-rid19847223.guided.43, whole genome shotgun sequence	6089..6523	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032778525.1_PDT001941677.1_genomic.fna	Salmonella_enterica	0.5222	410.978 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNYRS010000001.1 Salmonella enterica strain PNUSAS392233 SAMN37855425-rid19847193.denovo.01, whole genome shotgun sequence	835217..835654	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNYRS010000027.1 Salmonella enterica strain PNUSAS392233 SAMN37855425-rid19847193.guided.20, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYRS010000002.1	563676..564545	99.77	870	0						
GCA_032778545.1_PDT001941672.1_genomic.fna	Salmonella_enterica	0.5208	669.956 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYRT010000001.1 Salmonella enterica strain PNUSAS392234 SAMN37855424-rid19847153.denovo.01, whole genome shotgun sequence	422571..423008	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYRT010000044.1 Salmonella enterica strain PNUSAS392234 SAMN37855424-rid19847153.guided.21, whole genome shotgun sequence	10980..11417	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYRT010000003.1	497930..498798	99.425	870	0						
GCA_032778565.1_PDT001941665.1_genomic.fna	Salmonella_enterica	0.5213	321.569 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYRV010000001.1 Salmonella enterica strain PNUSAS392240 SAMN37855428-rid19847113.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYRV010000030.1 Salmonella enterica strain PNUSAS392240 SAMN37855428-rid19847113.guided.23, whole genome shotgun sequence	10103..10540	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYRV010000021.1 Salmonella enterica strain PNUSAS392240 SAMN37855428-rid19847113.denovo.22, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNYRV010000022.1 Salmonella enterica strain PNUSAS392240 SAMN37855428-rid19847113.denovo.25, whole genome shotgun sequence	3402..3663																																																avrA	ABNYRV010000002.1	585354..586223	99.54	870	0						
GCA_032778585.1_PDT001941666.1_genomic.fna	Salmonella_enterica	0.5211	438.74 KB	4	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYRW010000001.1 Salmonella enterica strain PNUSAS392241 SAMN37855427-rid19847123.denovo.01, whole genome shotgun sequence	648582..649019	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYRW010000022.1 Salmonella enterica strain PNUSAS392241 SAMN37855427-rid19847123.guided.18, whole genome shotgun sequence	3139..3576	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYRW010000002.1	568511..569380	99.425	870	0						
GCA_032778605.1_PDT001941664.1_genomic.fna	Salmonella_enterica	0.5186	449.374 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYRX010000001.1 Salmonella enterica strain PNUSAS392239 SAMN37855417-rid19847103.denovo.01, whole genome shotgun sequence	493338..493775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYRX010000037.1 Salmonella enterica strain PNUSAS392239 SAMN37855417-rid19847103.guided.22, whole genome shotgun sequence	5051..5488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYRX010000003.1	145724..146593	98.966	870	0						
GCA_032778625.1_PDT001941618.1_genomic.fna	Salmonella_enterica	0.5214	489.884 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYSB010000001.1 Salmonella enterica strain PNUSAS391328 SAMN37855292-rid19847793.denovo.01, whole genome shotgun sequence	108799..109236	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYSB010000024.1 Salmonella enterica strain PNUSAS391328 SAMN37855292-rid19847793.guided.18, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYSB010000013.1 Salmonella enterica strain PNUSAS391328 SAMN37855292-rid19847793.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNYSB010000013.1 Salmonella enterica strain PNUSAS391328 SAMN37855292-rid19847793.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNYSB010000003.1	553636..554505	99.54	870	0						
GCA_032778645.1_PDT001941658.1_genomic.fna	Salmonella_enterica	0.5213	406.326 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYRY010000001.1 Salmonella enterica strain PNUSAS392253 SAMN37855414-rid19847933.denovo.01, whole genome shotgun sequence	53500..53937	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYRY010000030.1 Salmonella enterica strain PNUSAS392253 SAMN37855414-rid19847933.guided.19, whole genome shotgun sequence	16476..16913	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col440I	95.61	114 / 114	ABNYRY010000023.1 Salmonella enterica strain PNUSAS392253 SAMN37855414-rid19847933.denovo.26, whole genome shotgun sequence	289..402	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYRY010000019.1 Salmonella enterica strain PNUSAS392253 SAMN37855414-rid19847933.denovo.20, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABNYRY010000020.1 Salmonella enterica strain PNUSAS392253 SAMN37855414-rid19847933.denovo.23, whole genome shotgun sequence	3402..3663																																									avrA	ABNYRY010000002.1	553575..554444	99.54	870	0						
GCA_032778675.1_PDT001941640.1_genomic.fna	Salmonella_enterica	0.5208	664.016 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYRZ010000001.1 Salmonella enterica strain PNUSAS391358 SAMN37855326-rid19846953.denovo.01, whole genome shotgun sequence	544952..545389	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYRZ010000022.1 Salmonella enterica strain PNUSAS391358 SAMN37855326-rid19846953.guided.16, whole genome shotgun sequence	9345..9782	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYRZ010000004.1	406335..407203	99.425	870	0						
GCA_032778705.1_PDT001941621.1_genomic.fna	Salmonella_enterica	0.5213	609.386 KB	3	aroC_52,dnaN_3,hemD_40,hisD_51,purE_44,sucA_45,thrA_3	101	4:r:l,w	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_52	dnaN	100	100	dnaN_3	hemD	100	100	hemD_40	hisD	100	100	hisD_51	purE	100	100	purE_44	sucA	100	100	sucA_45	thrA	100	100	thrA_3	4	r	l,w	Salmonella enterica subspecies enterica (subspecies I)	Bochum		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNYSA010000002.1 Salmonella enterica strain PNUSAS391286 SAMN37855288-rid19846833.denovo.02, whole genome shotgun sequence	37912..38349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNYSA010000028.1 Salmonella enterica strain PNUSAS391286 SAMN37855288-rid19846833.guided.19, whole genome shotgun sequence	4222..4659	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNYSA010000003.1 Salmonella enterica strain PNUSAS391286 SAMN37855288-rid19846833.denovo.03, whole genome shotgun sequence	357273..357695	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNYSA010000029.1 Salmonella enterica strain PNUSAS391286 SAMN37855288-rid19846833.guided.20, whole genome shotgun sequence	16080..16502	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYSA010000008.1	69869..70738	98.966	870	0						
GCA_032778725.1_PDT001941610.1_genomic.fna	Salmonella_enterica	0.5206	560.259 KB	4	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYSE010000008.1 Salmonella enterica strain PNUSAS391359 SAMN37855298-rid19846753.denovo.08, whole genome shotgun sequence	151992..152429	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYSE010000023.1 Salmonella enterica strain PNUSAS391359 SAMN37855298-rid19846753.guided.19, whole genome shotgun sequence	5466..5903	Amikacin, Tobramycin	NC_003197	fosA7	96.22	423/423	ABNYSE010000001.1 Salmonella enterica strain PNUSAS391359 SAMN37855298-rid19846753.denovo.01, whole genome shotgun sequence	394430..394852	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	ABNYSE010000021.1 Salmonella enterica strain PNUSAS391359 SAMN37855298-rid19846753.guided.17, whole genome shotgun sequence	15796..16218	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYSE010000002.1	139169..140038	99.195	870	0						
GCA_032778745.1_PDT001941617.1_genomic.fna	Salmonella_enterica	0.5215	708.245 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYSD010000001.1 Salmonella enterica strain PNUSAS391323 SAMN37855305-rid19847783.denovo.01, whole genome shotgun sequence	407341..407778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYSD010000022.1 Salmonella enterica strain PNUSAS391323 SAMN37855305-rid19847783.guided.12, whole genome shotgun sequence	23214..23651	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYSD010000003.1	514737..515605	99.195	870	0						
GCA_032778765.1_PDT001941609.1_genomic.fna	Salmonella_enterica	0.5214	280.443 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYSF010000001.1 Salmonella enterica strain PNUSAS391349 SAMN37855302-rid19846743.denovo.01, whole genome shotgun sequence	601113..601550	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYSF010000041.1 Salmonella enterica strain PNUSAS391349 SAMN37855302-rid19846743.guided.24, whole genome shotgun sequence	9235..9672	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNYSF010000016.1 Salmonella enterica strain PNUSAS391349 SAMN37855302-rid19846743.denovo.16, whole genome shotgun sequence	44623..45265	enterobacteriales	IncFII(S)	100	262 / 262	ABNYSF010000016.1 Salmonella enterica strain PNUSAS391349 SAMN37855302-rid19846743.denovo.16, whole genome shotgun sequence	60350..60611																																																avrA	ABNYSF010000002.1	209733..210602	99.885	870	0						
GCA_032778785.1_PDT001941602.1_genomic.fna	Salmonella_enterica	0.521	696.342 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYSG010000001.1 Salmonella enterica strain PNUSAS391291 SAMN37855289-rid19846703.denovo.01, whole genome shotgun sequence	414754..415191	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYSG010000023.1 Salmonella enterica strain PNUSAS391291 SAMN37855289-rid19846703.guided.13, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032778805.1_PDT001941601.1_genomic.fna	Salmonella_enterica	0.5209	516.91 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYSH010000001.1 Salmonella enterica strain PNUSAS391317 SAMN37855269-rid19847733.denovo.01, whole genome shotgun sequence	110503..110940	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYSH010000047.1 Salmonella enterica strain PNUSAS391317 SAMN37855269-rid19847733.guided.23, whole genome shotgun sequence	9216..9653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYSH010000003.1	505225..506095	99.196	871	0						
GCA_032778825.1_PDT001941593.1_genomic.fna	Salmonella_enterica	0.5206	490.114 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYSI010000001.1 Salmonella enterica strain PNUSAS391324 SAMN37855273-rid19847703.denovo.01, whole genome shotgun sequence	521336..521773	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYSI010000025.1 Salmonella enterica strain PNUSAS391324 SAMN37855273-rid19847703.guided.16, whole genome shotgun sequence	13374..13811	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYSI010000013.1 Salmonella enterica strain PNUSAS391324 SAMN37855273-rid19847703.denovo.13, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNYSI010000013.1 Salmonella enterica strain PNUSAS391324 SAMN37855273-rid19847703.denovo.13, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNYSI010000014.1 Salmonella enterica strain PNUSAS391324 SAMN37855273-rid19847703.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNYSI010000002.1	553690..554559	99.54	870	0						
GCA_032778845.1_PDT001941595.1_genomic.fna	Salmonella_enterica	0.521	641.245 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNYSK010000001.1 Salmonella enterica strain PNUSAS391296 SAMN37855282-rid19846663.denovo.01, whole genome shotgun sequence	419295..419732	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNYSK010000022.1 Salmonella enterica strain PNUSAS391296 SAMN37855282-rid19846663.guided.15, whole genome shotgun sequence	11491..11928	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNYSK010000017.1 Salmonella enterica strain PNUSAS391296 SAMN37855282-rid19846663.denovo.20, whole genome shotgun sequence	1575..1705																																																						avrA	ABNYSK010000005.1	160638..161507	99.54	870	0						
GCA_032778865.1_PDT001941583.1_genomic.fna	Salmonella_enterica	0.5215	682.676 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYSL010000001.1 Salmonella enterica strain PNUSAS391381 SAMN37855224-rid19847653.denovo.01, whole genome shotgun sequence	632282..632719	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYSL010000021.1 Salmonella enterica strain PNUSAS391381 SAMN37855224-rid19847653.guided.14, whole genome shotgun sequence	13074..13511	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYSL010000004.1	405938..406806	99.425	870	0						
GCA_032778885.1_PDT001941579.1_genomic.fna	Salmonella_enterica	0.5213	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNYSM010000001.1 Salmonella enterica strain PNUSAS391380 SAMN37855223-rid19846583.denovo.01, whole genome shotgun sequence	666187..666624	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNYSM010000018.1 Salmonella enterica strain PNUSAS391380 SAMN37855223-rid19846583.guided.13, whole genome shotgun sequence	23214..23651	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYSM010000004.1	160628..161497	99.54	870	0						
GCA_032778895.1_PDT001941584.1_genomic.fna	Salmonella_enterica	0.521	660.349 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYSJ010000001.1 Salmonella enterica strain PNUSAS391319 SAMN37855271-rid19846603.denovo.01, whole genome shotgun sequence	596449..596886	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYSJ010000023.1 Salmonella enterica strain PNUSAS391319 SAMN37855271-rid19846603.guided.13, whole genome shotgun sequence	2847..3284	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	ABNYSJ010000010.1 Salmonella enterica strain PNUSAS391319 SAMN37855271-rid19846603.denovo.10, whole genome shotgun sequence	71283..71422																																																						avrA	ABNYSJ010000003.1	509485..510353	99.425	870	0						
GCA_032778925.1_PDT001941577.1_genomic.fna	Salmonella_enterica	0.5226	389.325 KB	4	aroC_543,dnaN_69,hemD_101,hisD_12,purE_370,sucA_130,thrA_347	2553	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_543	dnaN	100	100	dnaN_69	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_370	sucA	100	100	sucA_130	thrA	100	100	thrA_347	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNYSN010000002.1 Salmonella enterica strain PNUSAS391316 SAMN37855228-rid19846573.denovo.02, whole genome shotgun sequence	112054..112491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNYSN010000022.1 Salmonella enterica strain PNUSAS391316 SAMN37855228-rid19846573.guided.17, whole genome shotgun sequence	9232..9669	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYSN010000005.1	146853..147722	99.31	870	0						
GCA_032778945.1_PDT001941575.1_genomic.fna	Salmonella_enterica	0.5225	496.517 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYSO010000001.1 Salmonella enterica strain PNUSAS391314 SAMN37855227-rid19846563.denovo.01, whole genome shotgun sequence	789918..790355	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYSO010000025.1 Salmonella enterica strain PNUSAS391314 SAMN37855227-rid19846563.guided.16, whole genome shotgun sequence	9505..9942	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYSO010000002.1	183142..184011	98.966	870	0						
GCA_032778965.1_PDT001941571.1_genomic.fna	Salmonella_enterica	0.5221	460.73 KB	4	aroC_127,dnaN_81,hemD_111,hisD_564,purE_39,sucA_226,thrA_41	2225	13:b:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_127	dnaN	100	100	dnaN_81	hemD	100	100	hemD_111	hisD	100	100	hisD_564	purE	100	100	purE_39	sucA	100	100	sucA_226	thrA	100	100	thrA_41	13	b	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Durham		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNYSQ010000001.1 Salmonella enterica strain PNUSAS391327 SAMN37855232-rid19847593.denovo.01, whole genome shotgun sequence	307628..308065	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNYSQ010000039.1 Salmonella enterica strain PNUSAS391327 SAMN37855232-rid19847593.guided.28, whole genome shotgun sequence	9216..9653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYSQ010000003.1	140409..141278	98.966	870	0						
GCA_032778985.1_PDT001941566.1_genomic.fna	Salmonella_enterica	0.5226	438.449 KB	4	aroC_543,dnaN_69,hemD_101,hisD_12,purE_370,sucA_130,thrA_347	2553	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_543	dnaN	100	100	dnaN_69	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_370	sucA	100	100	sucA_130	thrA	100	100	thrA_347	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNYSS010000001.1 Salmonella enterica strain PNUSAS391383 SAMN37855229-rid19847583.denovo.01, whole genome shotgun sequence	145548..145985	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNYSS010000025.1 Salmonella enterica strain PNUSAS391383 SAMN37855229-rid19847583.guided.19, whole genome shotgun sequence	2063..2500	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYSS010000002.1	514142..515011	99.31	870	0						
GCA_032779005.1_PDT001941574.1_genomic.fna	Salmonella_enterica	0.5214	279.776 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	Col440I,ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYSP010000001.1 Salmonella enterica strain PNUSAS391356 SAMN37855237-rid19846553.denovo.01, whole genome shotgun sequence	578606..579043	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYSP010000033.1 Salmonella enterica strain PNUSAS391356 SAMN37855237-rid19846553.denovo.38, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYSP010000033.1 Salmonella enterica strain PNUSAS391356 SAMN37855237-rid19846553.denovo.38, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNYSP010000050.1 Salmonella enterica strain PNUSAS391356 SAMN37855237-rid19846553.guided.35, whole genome shotgun sequence	758..1195	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYSP010000051.1 Salmonella enterica strain PNUSAS391356 SAMN37855237-rid19846553.guided.37, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYSP010000051.1 Salmonella enterica strain PNUSAS391356 SAMN37855237-rid19846553.guided.37, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNYSP010000039.1 Salmonella enterica strain PNUSAS391356 SAMN37855237-rid19846553.denovo.45, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNYSP010000052.1 Salmonella enterica strain PNUSAS391356 SAMN37855237-rid19846553.guided.44, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNYSP010000033.1 Salmonella enterica strain PNUSAS391356 SAMN37855237-rid19846553.denovo.38, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNYSP010000051.1 Salmonella enterica strain PNUSAS391356 SAMN37855237-rid19846553.guided.37, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNYSP010000028.1 Salmonella enterica strain PNUSAS391356 SAMN37855237-rid19846553.denovo.31, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYSP010000049.1 Salmonella enterica strain PNUSAS391356 SAMN37855237-rid19846553.guided.30, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col440I	93.64	110 / 114	ABNYSP010000038.1 Salmonella enterica strain PNUSAS391356 SAMN37855237-rid19846553.denovo.43, whole genome shotgun sequence	1566..1675	enterobacteriales	ColRNAI	90.08	131 / 130	ABNYSP010000032.1 Salmonella enterica strain PNUSAS391356 SAMN37855237-rid19846553.denovo.36, whole genome shotgun sequence	3981..4111																																																avrA	ABNYSP010000002.1	508737..509606	99.885	870	0						
GCA_032779025.1_PDT001941553.1_genomic.fna	Salmonella_enterica	0.5219	417.731 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNYST010000001.1 Salmonella enterica strain PNUSAS391303 SAMN37855200-rid19846403.denovo.01, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNYST010000043.1 Salmonella enterica strain PNUSAS391303 SAMN37855200-rid19846403.guided.25, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYST010000012.1	101941..102810	99.655	870	0						
GCA_032779045.1_PDT001941562.1_genomic.fna	Salmonella_enterica	0.5207	559.782 KB	4	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYSR010000008.1 Salmonella enterica strain PNUSAS391368 SAMN37855214-rid19847573.denovo.08, whole genome shotgun sequence	152430..152867	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYSR010000018.1 Salmonella enterica strain PNUSAS391368 SAMN37855214-rid19847573.guided.15, whole genome shotgun sequence	9224..9661	Amikacin, Tobramycin	NC_003197	fosA7	96.22	423/423	ABNYSR010000001.1 Salmonella enterica strain PNUSAS391368 SAMN37855214-rid19847573.denovo.01, whole genome shotgun sequence	394430..394852	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	ABNYSR010000021.1 Salmonella enterica strain PNUSAS391368 SAMN37855214-rid19847573.guided.18, whole genome shotgun sequence	4337..4759	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYSR010000002.1	139169..140038	99.195	870	0						
GCA_032779065.1_PDT001786018.1_genomic.fna	Salmonella_enterica	0.5221	500.177 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYSU010000001.1 Salmonella enterica strain FDA870226-S002-001 SAMN35807145-rid18531703.denovo.01, whole genome shotgun sequence	798103..798540	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYSU010000027.1 Salmonella enterica strain FDA870226-S002-001 SAMN35807145-rid18531703.guided.15, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYSU010000002.1	129887..130756	98.966	870	0						
GCA_032779085.1_PDT001786016.1_genomic.fna	Salmonella_enterica	0.5221	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYSV010000001.1 Salmonella enterica strain FDA870226-S001-001 SAMN35806081-rid18525843.denovo.01, whole genome shotgun sequence	798103..798540	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYSV010000032.1 Salmonella enterica strain FDA870226-S001-001 SAMN35806081-rid18525843.guided.16, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYSV010000002.1	129887..130756	98.966	870	0						
GCA_032779145.1_PDT001786012.1_genomic.fna	Salmonella_enterica	0.5209	492.614 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYSZ010000001.1 Salmonella enterica strain PNUSAS357281 SAMN35805023-rid18519793.denovo.01, whole genome shotgun sequence	293281..293718	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYSZ010000028.1 Salmonella enterica strain PNUSAS357281 SAMN35805023-rid18519793.guided.17, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYSZ010000018.1 Salmonella enterica strain PNUSAS357281 SAMN35805023-rid18519793.denovo.20, whole genome shotgun sequence	14221..14863	enterobacteriales	IncFII(S)	100	262 / 262	ABNYSZ010000018.1 Salmonella enterica strain PNUSAS357281 SAMN35805023-rid18519793.denovo.20, whole genome shotgun sequence	3105..3366																																																avrA	ABNYSZ010000002.1	552672..553541	99.54	870	0						
GCA_032779165.1_PDT001786010.1_genomic.fna	Salmonella_enterica	0.5206	385.811 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX3(pEC14)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNYSY010000001.1 Salmonella enterica strain PNUSAS357282 SAMN35807144-rid18519783.denovo.01, whole genome shotgun sequence	631584..632021	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNYSY010000037.1 Salmonella enterica strain PNUSAS357282 SAMN35807144-rid18519783.guided.26, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX3(pEC14)	97.06	374 / 374	ABNYSY010000019.1 Salmonella enterica strain PNUSAS357282 SAMN35807144-rid18519783.denovo.20, whole genome shotgun sequence	11431..11804																																																																	
GCA_032779225.1_PDT001786014.1_genomic.fna	Salmonella_enterica	0.5215	299.747 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYSX010000001.1 Salmonella enterica strain PNUSAS357264 SAMN35803727-rid18527493.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYSX010000036.1 Salmonella enterica strain PNUSAS357264 SAMN35803727-rid18527493.guided.26, whole genome shotgun sequence	20504..20941	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYSX010000003.1	218735..219603	99.77	870	0						
GCA_032779245.1_PDT001786007.1_genomic.fna	Salmonella_enterica	0.5206	287.903 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pHCM2),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYTC010000001.1 Salmonella enterica strain PNUSAS357083 SAMN35802797-rid18518283.denovo.01, whole genome shotgun sequence	274979..275416	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYTC010000048.1 Salmonella enterica strain PNUSAS357083 SAMN35802797-rid18518283.guided.24, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	98.63	875 / 875	ABNYTC010000016.1 Salmonella enterica strain PNUSAS357083 SAMN35802797-rid18518283.denovo.16, whole genome shotgun sequence	12149..13023	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNYTC010000024.1 Salmonella enterica strain PNUSAS357083 SAMN35802797-rid18518283.denovo.26, whole genome shotgun sequence	9345..9486																																																avrA	ABNYTC010000002.1	210322..211191	98.966	870	0						
GCA_032779265.1_PDT001786006.1_genomic.fna	Salmonella_enterica	0.5227	374.36 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYTD010000001.1 Salmonella enterica strain PNUSAS357243 SAMN35803773-rid18525833.denovo.01, whole genome shotgun sequence	405412..405849	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYTD010000034.1 Salmonella enterica strain PNUSAS357243 SAMN35803773-rid18525833.guided.24, whole genome shotgun sequence	5181..5618	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYTD010000008.1	94166..95034	99.425	870	0						
GCA_032779305.1_PDT001786002.1_genomic.fna	Salmonella_enterica	0.5215	278.339 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul2,tet(B),tet(B)	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYTG010000001.1 Salmonella enterica strain PNUSAS357242 SAMN35803793-rid18519773.denovo.01, whole genome shotgun sequence	194735..195172	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYTG010000042.1 Salmonella enterica strain PNUSAS357242 SAMN35803793-rid18519773.denovo.43, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYTG010000042.1 Salmonella enterica strain PNUSAS357242 SAMN35803793-rid18519773.denovo.43, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNYTG010000058.1 Salmonella enterica strain PNUSAS357242 SAMN35803793-rid18519773.guided.44, whole genome shotgun sequence	3426..4262	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYTG010000058.1 Salmonella enterica strain PNUSAS357242 SAMN35803793-rid18519773.guided.44, whole genome shotgun sequence	2623..3426	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNYTG010000063.1 Salmonella enterica strain PNUSAS357242 SAMN35803793-rid18519773.guided.61, whole genome shotgun sequence	163..600	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNYTG010000047.1 Salmonella enterica strain PNUSAS357242 SAMN35803793-rid18519773.denovo.52, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNYTG010000061.1 Salmonella enterica strain PNUSAS357242 SAMN35803793-rid18519773.guided.51, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNYTG010000045.1 Salmonella enterica strain PNUSAS357242 SAMN35803793-rid18519773.denovo.48, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNYTG010000059.1 Salmonella enterica strain PNUSAS357242 SAMN35803793-rid18519773.guided.47, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABNYTG010000042.1 Salmonella enterica strain PNUSAS357242 SAMN35803793-rid18519773.denovo.43, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNYTG010000058.1 Salmonella enterica strain PNUSAS357242 SAMN35803793-rid18519773.guided.44, whole genome shotgun sequence	1747..2562	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNYTG010000039.1 Salmonella enterica strain PNUSAS357242 SAMN35803793-rid18519773.denovo.40, whole genome shotgun sequence	424..1629	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYTG010000060.1 Salmonella enterica strain PNUSAS357242 SAMN35803793-rid18519773.guided.49, whole genome shotgun sequence	776..1981	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	100	131 / 131	ABNYTG010000045.1 Salmonella enterica strain PNUSAS357242 SAMN35803793-rid18519773.denovo.48, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNYTG010000059.1 Salmonella enterica strain PNUSAS357242 SAMN35803793-rid18519773.guided.47, whole genome shotgun sequence	2044..2174																																																avrA	ABNYTG010000002.1	434711..435580	99.885	870	0						
GCA_032779325.1_PDT001786001.1_genomic.fna	Salmonella_enterica	0.5221	469.28 KB	4	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pMET),IncI(Gamma)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNYTH010000001.1 Salmonella enterica strain PNUSAS357255 SAMN35803718-rid18524243.denovo.01, whole genome shotgun sequence	489948..490385	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNYTH010000028.1 Salmonella enterica strain PNUSAS357255 SAMN35803718-rid18524243.guided.20, whole genome shotgun sequence	958..1395	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pMET)	98.27	577 / 577	ABNYTH010000018.1 Salmonella enterica strain PNUSAS357255 SAMN35803718-rid18524243.denovo.18, whole genome shotgun sequence	28348..28924	enterobacteriales	IncI(Gamma)	97.81	137 / 141	ABNYTH010000015.1 Salmonella enterica strain PNUSAS357255 SAMN35803718-rid18524243.denovo.15, whole genome shotgun sequence	15834..15970																																																avrA	ABNYTH010000004.1	140108..140977	99.54	870	0						
GCA_032779345.1_PDT001785999.1_genomic.fna	Salmonella_enterica	0.5219	400.85 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYTI010000001.1 Salmonella enterica strain PNUSAS357254 SAMN35803786-rid18522653.denovo.01, whole genome shotgun sequence	469353..469790	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYTI010000027.1 Salmonella enterica strain PNUSAS357254 SAMN35803786-rid18522653.guided.16, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYTI010000008.1	174754..175623	99.425	870	0						
GCA_032779355.1_PDT001786003.1_genomic.fna	Salmonella_enterica	0.5225	382.65 KB	5	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColpVC	aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNYTF010000001.1 Salmonella enterica strain PNUSAS357250 SAMN35803780-rid18529053.denovo.01, whole genome shotgun sequence	308063..308500	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNYTF010000029.1 Salmonella enterica strain PNUSAS357250 SAMN35803780-rid18529053.guided.19, whole genome shotgun sequence	8087..8524	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	97.93	193 / 193	ABNYTF010000021.1 Salmonella enterica strain PNUSAS357250 SAMN35803780-rid18529053.denovo.24, whole genome shotgun sequence	203..395																																																																	
GCA_032779385.1_PDT001785998.1_genomic.fna	Salmonella_enterica	0.5228	590.936 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrB_p.E466D,parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYTJ010000001.1 Salmonella enterica strain PNUSAS357247 SAMN35803777-rid18531693.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYTJ010000030.1 Salmonella enterica strain PNUSAS357247 SAMN35803777-rid18531693.guided.25, whole genome shotgun sequence	133..570	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrB p.E466D	GAA -> GAT	E -> D	Nalidixic Acid, Ciprofloxacin	26933021	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNYTJ010000013.1 Salmonella enterica strain PNUSAS357247 SAMN35803777-rid18531693.denovo.13, whole genome shotgun sequence	80237..80378																																																																	
GCA_032779405.1_PDT001785997.1_genomic.fna	Salmonella_enterica	0.5213	341.891 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYTK010000003.1 Salmonella enterica strain PNUSAS357140 SAMN35802872-rid18518263.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYTK010000037.1 Salmonella enterica strain PNUSAS357140 SAMN35802872-rid18518263.guided.16, whole genome shotgun sequence	22237..22674	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNYTK010000015.1 Salmonella enterica strain PNUSAS357140 SAMN35802872-rid18518263.denovo.15, whole genome shotgun sequence	44751..45393	enterobacteriales	IncFII(S)	100	262 / 262	ABNYTK010000015.1 Salmonella enterica strain PNUSAS357140 SAMN35802872-rid18518263.denovo.15, whole genome shotgun sequence	29405..29666																																																avrA	ABNYTK010000005.1	174651..175519	100	869	0						
GCA_032779425.1_PDT001941694.1_genomic.fna	Salmonella_enterica	0.5211	203.759 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYTM010000001.1 Salmonella enterica strain PNUSAS392264 SAMN37855467-rid19848043.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNYTM010000039.1 Salmonella enterica strain PNUSAS392264 SAMN37855467-rid19848043.denovo.45, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYTM010000039.1 Salmonella enterica strain PNUSAS392264 SAMN37855467-rid19848043.denovo.45, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNYTM010000056.1 Salmonella enterica strain PNUSAS392264 SAMN37855467-rid19848043.guided.34, whole genome shotgun sequence	5085..5522	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNYTM010000059.1 Salmonella enterica strain PNUSAS392264 SAMN37855467-rid19848043.guided.44, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYTM010000059.1 Salmonella enterica strain PNUSAS392264 SAMN37855467-rid19848043.guided.44, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNYTM010000040.1 Salmonella enterica strain PNUSAS392264 SAMN37855467-rid19848043.denovo.46, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNYTM010000060.1 Salmonella enterica strain PNUSAS392264 SAMN37855467-rid19848043.guided.47, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNYTM010000037.1 Salmonella enterica strain PNUSAS392264 SAMN37855467-rid19848043.denovo.41, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNYTM010000057.1 Salmonella enterica strain PNUSAS392264 SAMN37855467-rid19848043.guided.40, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	dfrA14	100	474/474	ABNYTM010000035.1 Salmonella enterica strain PNUSAS392264 SAMN37855467-rid19848043.denovo.38, whole genome shotgun sequence	3735..4208	Trimethoprim	AF393510	dfrA14	100	474/474	ABNYTM010000058.1 Salmonella enterica strain PNUSAS392264 SAMN37855467-rid19848043.guided.42, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYTM010000029.1 Salmonella enterica strain PNUSAS392264 SAMN37855467-rid19848043.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABNYTM010000002.1	149828..150697	99.655	870	0						
GCA_032779445.1_PDT001941683.1_genomic.fna	Salmonella_enterica	0.5213	406.983 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYTP010000001.1 Salmonella enterica strain PNUSAS392266 SAMN37855465-rid19848003.denovo.01, whole genome shotgun sequence	477388..477825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYTP010000039.1 Salmonella enterica strain PNUSAS392266 SAMN37855465-rid19848003.guided.26, whole genome shotgun sequence	8796..9233	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYTP010000012.1	93873..94743	99.196	871	0						
GCA_032779465.1_PDT001941689.1_genomic.fna	Salmonella_enterica	0.5217	238.81 KB	7	aroC_10,dnaN_19,hemD_363,hisD_9,purE_5,sucA_9,thrA_2	2379	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_363	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYTO010000001.1 Salmonella enterica strain PNUSAS392271 SAMN37855458-rid19847273.denovo.01, whole genome shotgun sequence	458968..459405	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYTO010000036.1 Salmonella enterica strain PNUSAS392271 SAMN37855458-rid19847273.denovo.41, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYTO010000036.1 Salmonella enterica strain PNUSAS392271 SAMN37855458-rid19847273.denovo.41, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNYTO010000058.1 Salmonella enterica strain PNUSAS392271 SAMN37855458-rid19847273.guided.34, whole genome shotgun sequence	12282..12719	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYTO010000060.1 Salmonella enterica strain PNUSAS392271 SAMN37855458-rid19847273.guided.39, whole genome shotgun sequence	3564..4400	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYTO010000060.1 Salmonella enterica strain PNUSAS392271 SAMN37855458-rid19847273.guided.39, whole genome shotgun sequence	2761..3564	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNYTO010000042.1 Salmonella enterica strain PNUSAS392271 SAMN37855458-rid19847273.denovo.48, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNYTO010000061.1 Salmonella enterica strain PNUSAS392271 SAMN37855458-rid19847273.guided.47, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNYTO010000036.1 Salmonella enterica strain PNUSAS392271 SAMN37855458-rid19847273.denovo.41, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNYTO010000060.1 Salmonella enterica strain PNUSAS392271 SAMN37855458-rid19847273.guided.39, whole genome shotgun sequence	1885..2700	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNYTO010000032.1 Salmonella enterica strain PNUSAS392271 SAMN37855458-rid19847273.denovo.36, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYTO010000059.1 Salmonella enterica strain PNUSAS392271 SAMN37855458-rid19847273.guided.35, whole genome shotgun sequence	4117..5322	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNYTO010000008.1	93863..94732	99.885	870	0						
GCA_032779475.1_PDT001785996.1_genomic.fna	Salmonella_enterica	0.5232	444.116 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYTL010000001.1 Salmonella enterica strain PNUSAS357246 SAMN35803776-rid18525823.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYTL010000031.1 Salmonella enterica strain PNUSAS357246 SAMN35803776-rid18525823.guided.23, whole genome shotgun sequence	3192..3629	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYTL010000002.1	149828..150697	99.54	870	0						
GCA_032779505.1_PDT001941693.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYTN010000001.1 Salmonella enterica strain PNUSAS392278 SAMN37855462-rid19848033.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYTN010000024.1 Salmonella enterica strain PNUSAS392278 SAMN37855462-rid19848033.guided.16, whole genome shotgun sequence	12388..12825	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYTN010000016.1 Salmonella enterica strain PNUSAS392278 SAMN37855462-rid19848033.denovo.17, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNYTN010000017.1 Salmonella enterica strain PNUSAS392278 SAMN37855462-rid19848033.denovo.19, whole genome shotgun sequence	3403..3664																																																avrA	ABNYTN010000002.1	553635..554504	99.54	870	0						
GCA_032779545.1_PDT001941673.1_genomic.fna	Salmonella_enterica	0.5215	275.099 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYTQ010000001.1 Salmonella enterica strain PNUSAS392245 SAMN37855422-rid19847983.denovo.01, whole genome shotgun sequence	233303..233740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYTQ010000047.1 Salmonella enterica strain PNUSAS392245 SAMN37855422-rid19847983.guided.32, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYTQ010000003.1	208058..208926	99.77	870	0						
GCA_032779565.1_PDT001941669.1_genomic.fna	Salmonella_enterica	0.5199	480.109 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNYTS010000001.1 Salmonella enterica strain PNUSAS392248 SAMN37855419-rid19847973.denovo.01, whole genome shotgun sequence	894195..894632	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNYTS010000032.1 Salmonella enterica strain PNUSAS392248 SAMN37855419-rid19847973.guided.21, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYTS010000004.1	341175..342044	98.966	870	0						
GCA_032779585.1_PDT001941616.1_genomic.fna	Salmonella_enterica	0.5213	720.739 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNYTU010000001.1 Salmonella enterica strain PNUSAS391308 SAMN37855297-rid19846803.denovo.01, whole genome shotgun sequence	720393..720830	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNYTU010000017.1 Salmonella enterica strain PNUSAS391308 SAMN37855297-rid19846803.guided.12, whole genome shotgun sequence	6824..7261	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYTU010000003.1	548111..548980	99.54	870	0						
GCA_032779605.1_PDT001941623.1_genomic.fna	Salmonella_enterica	0.5206	655.999 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYTT010000001.1 Salmonella enterica strain PNUSAS391322 SAMN37855291-rid19847803.denovo.01, whole genome shotgun sequence	383528..383965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYTT010000047.1 Salmonella enterica strain PNUSAS391322 SAMN37855291-rid19847803.guided.22, whole genome shotgun sequence	9216..9653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYTT010000003.1	504335..505205	99.196	871	0						
GCA_032779625.1_PDT001941615.1_genomic.fna	Salmonella_enterica	0.5223	389.304 KB	3	aroC_543,dnaN_69,hemD_101,hisD_12,purE_370,sucA_130,thrA_347	2553	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_543	dnaN	100	100	dnaN_69	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_370	sucA	100	100	sucA_130	thrA	100	100	thrA_347	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNYTV010000001.1 Salmonella enterica strain PNUSAS391306 SAMN37855308-rid19846793.denovo.01, whole genome shotgun sequence	677867..678304	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNYTV010000022.1 Salmonella enterica strain PNUSAS391306 SAMN37855308-rid19846793.guided.14, whole genome shotgun sequence	43349..43786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYTV010000002.1	514143..515012	99.31	870	0						
GCA_032779645.1_PDT001941614.1_genomic.fna	Salmonella_enterica	0.5216	557.942 KB	4	aroC_11,dnaN_10,hemD_25,hisD_118,purE_10,sucA_13,thrA_4	343	4:e,h:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_118	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNYTW010000005.1 Salmonella enterica strain PNUSAS391373 SAMN37855306-rid19846783.denovo.05, whole genome shotgun sequence	260622..261059	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNYTW010000024.1 Salmonella enterica strain PNUSAS391373 SAMN37855306-rid19846783.guided.19, whole genome shotgun sequence	9224..9661	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYTW010000003.1	94151..95020	99.54	870	0						
GCA_032779665.1_PDT001941608.1_genomic.fna	Salmonella_enterica	0.521	207.444 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYTX010000002.1 Salmonella enterica strain PNUSAS391305 SAMN37855304-rid19847763.denovo.02, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYTX010000049.1 Salmonella enterica strain PNUSAS391305 SAMN37855304-rid19847763.guided.32, whole genome shotgun sequence	14550..14987	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNYTX010000018.1 Salmonella enterica strain PNUSAS391305 SAMN37855304-rid19847763.denovo.18, whole genome shotgun sequence	37282..37924	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNYTX010000018.1 Salmonella enterica strain PNUSAS391305 SAMN37855304-rid19847763.denovo.18, whole genome shotgun sequence	10978..11204																																																avrA	ABNYTX010000005.1	95114..95982	99.77	870	0						
GCA_032779685.1_PDT001941588.1_genomic.fna	Salmonella_enterica	0.5218	649.605 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYUA010000001.1 Salmonella enterica strain PNUSAS391320 SAMN37855268-rid19847673.denovo.01, whole genome shotgun sequence	639283..639720	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYUA010000034.1 Salmonella enterica strain PNUSAS391320 SAMN37855268-rid19847673.guided.12, whole genome shotgun sequence	23199..23636	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYUA010000003.1	498766..499634	99.425	870	0						
GCA_032779705.1_PDT001941600.1_genomic.fna	Salmonella_enterica	0.5207	415.126 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNYTY010000002.1 Salmonella enterica strain PNUSAS391310 SAMN37855285-rid19846693.denovo.02, whole genome shotgun sequence	625314..625751	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNYTY010000031.1 Salmonella enterica strain PNUSAS391310 SAMN37855285-rid19846693.guided.21, whole genome shotgun sequence	13312..13749	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNYTY010000014.1 Salmonella enterica strain PNUSAS391310 SAMN37855285-rid19846693.denovo.14, whole genome shotgun sequence	37282..37924	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNYTY010000014.1 Salmonella enterica strain PNUSAS391310 SAMN37855285-rid19846693.denovo.14, whole genome shotgun sequence	10978..11204																																																											
GCA_032779725.1_PDT001941598.1_genomic.fna	Salmonella_enterica	0.5207	655.986 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYTZ010000001.1 Salmonella enterica strain PNUSAS391354 SAMN37855277-rid19847723.denovo.01, whole genome shotgun sequence	384605..385042	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYTZ010000044.1 Salmonella enterica strain PNUSAS391354 SAMN37855277-rid19847723.guided.17, whole genome shotgun sequence	2673..3110	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYTZ010000003.1	504322..505192	99.196	871	0						
GCA_032779745.1_PDT001941573.1_genomic.fna	Salmonella_enterica	0.5211	696.375 KB	3	aroC_13,dnaN_11,hemD_315,hisD_15,purE_12,sucA_15,thrA_4	1675	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_315	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYUC010000002.1 Salmonella enterica strain PNUSAS391315 SAMN37855230-rid19846543.denovo.02, whole genome shotgun sequence	643431..643868	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYUC010000019.1 Salmonella enterica strain PNUSAS391315 SAMN37855230-rid19846543.guided.14, whole genome shotgun sequence	9224..9661	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032779765.1_PDT001941582.1_genomic.fna	Salmonella_enterica	0.5217	728.83 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYUB010000001.1 Salmonella enterica strain PNUSAS391313 SAMN37855219-rid19847643.denovo.01, whole genome shotgun sequence	145254..145691	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYUB010000022.1 Salmonella enterica strain PNUSAS391313 SAMN37855219-rid19847643.guided.15, whole genome shotgun sequence	758..1195	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNYUB010000011.1 Salmonella enterica strain PNUSAS391313 SAMN37855219-rid19847643.denovo.11, whole genome shotgun sequence	14774..14915																																																						avrA	ABNYUB010000003.1	553834..554703	99.77	870	0						
GCA_032779785.1_PDT001941568.1_genomic.fna	Salmonella_enterica	0.521	481.288 KB	3	aroC_50,dnaN_63,hemD_25,hisD_72,purE_59,sucA_71,thrA_63	174	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_63	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_59	sucA	100	100	sucA_71	thrA	100	100	thrA_63	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYUD010000001.1 Salmonella enterica strain PNUSAS391321 SAMN37855235-rid19846513.denovo.01, whole genome shotgun sequence	399787..400224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYUD010000030.1 Salmonella enterica strain PNUSAS391321 SAMN37855235-rid19846513.guided.18, whole genome shotgun sequence	9224..9661	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032779805.1_PDT001941565.1_genomic.fna	Salmonella_enterica	0.5213	720.971 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNYUE010000001.1 Salmonella enterica strain PNUSAS391378 SAMN37855222-rid19846493.denovo.01, whole genome shotgun sequence	717883..718320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNYUE010000015.1 Salmonella enterica strain PNUSAS391378 SAMN37855222-rid19846493.guided.09, whole genome shotgun sequence	21662..22099	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYUE010000003.1	160540..161409	99.54	870	0						
GCA_032779825.1_PDT001941561.1_genomic.fna	Salmonella_enterica	0.521	720.97 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNYUF010000001.1 Salmonella enterica strain PNUSAS391370 SAMN37855212-rid19847563.denovo.01, whole genome shotgun sequence	427973..428410	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNYUF010000018.1 Salmonella enterica strain PNUSAS391370 SAMN37855212-rid19847563.guided.13, whole genome shotgun sequence	7769..8206	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYUF010000003.1	160414..161283	99.54	870	0						
GCA_032779845.1_PDT001941560.1_genomic.fna	Salmonella_enterica	0.5168	350.093 KB	5	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(Yp),IncFII(pCRY)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNYUG010000002.1 Salmonella enterica strain PNUSAS391366 SAMN37855217-rid19846463.denovo.02, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNYUG010000052.1 Salmonella enterica strain PNUSAS391366 SAMN37855217-rid19846463.guided.23, whole genome shotgun sequence	4407..4844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNYUG010000009.1 Salmonella enterica strain PNUSAS391366 SAMN37855217-rid19846463.denovo.09, whole genome shotgun sequence	163679..164321	enterobacteriales	IncFII(Yp)	99.57	230 / 230	ABNYUG010000019.1 Salmonella enterica strain PNUSAS391366 SAMN37855217-rid19846463.denovo.19, whole genome shotgun sequence	48566..48795		enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABNYUG010000027.1 Salmonella enterica strain PNUSAS391366 SAMN37855217-rid19846463.denovo.29, whole genome shotgun sequence	8802..9394																																																				
GCA_032779855.1_PDT001941559.1_genomic.fna	Salmonella_enterica	0.5205	384.204 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNYUH010000001.1 Salmonella enterica strain PNUSAS391298 SAMN37855213-rid19846453.denovo.01, whole genome shotgun sequence	619874..620311	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNYUH010000082.1 Salmonella enterica strain PNUSAS391298 SAMN37855213-rid19846453.guided.36, whole genome shotgun sequence	4960..5397	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNYUH010000021.1 Salmonella enterica strain PNUSAS391298 SAMN37855213-rid19846453.denovo.21, whole genome shotgun sequence	12562..13204	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNYUH010000025.1 Salmonella enterica strain PNUSAS391298 SAMN37855213-rid19846453.denovo.26, whole genome shotgun sequence	21066..21658																																																avrA	ABNYUH010000008.1	143431..144299	99.425	870	0						
GCA_032779885.1_PDT001941558.1_genomic.fna	Salmonella_enterica	0.5216	331.889 KB	6	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNYUI010000002.1 Salmonella enterica strain PNUSAS391287 SAMN37855207-rid19846443.denovo.02, whole genome shotgun sequence	239428..239865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNYUI010000038.1 Salmonella enterica strain PNUSAS391287 SAMN37855207-rid19846443.guided.27, whole genome shotgun sequence	9290..9727	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNYUI010000013.1 Salmonella enterica strain PNUSAS391287 SAMN37855207-rid19846443.denovo.13, whole genome shotgun sequence	37293..37935	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNYUI010000013.1 Salmonella enterica strain PNUSAS391287 SAMN37855207-rid19846443.denovo.13, whole genome shotgun sequence	10978..11204																																																											
GCA_032779905.1_PDT001941552.1_genomic.fna	Salmonella_enterica	0.5212	706.974 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYUK010000002.1 Salmonella enterica strain PNUSAS391352 SAMN37855202-rid19847543.denovo.02, whole genome shotgun sequence	642564..643001	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYUK010000017.1 Salmonella enterica strain PNUSAS391352 SAMN37855202-rid19847543.guided.13, whole genome shotgun sequence	6775..7212	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032779925.1_PDT001941556.1_genomic.fna	Salmonella_enterica	0.521	214.248 KB	6	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNYUJ010000001.1 Salmonella enterica strain PNUSAS391375 SAMN37855211-rid19847553.denovo.01, whole genome shotgun sequence	94910..95347	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNYUJ010000080.1 Salmonella enterica strain PNUSAS391375 SAMN37855211-rid19847553.guided.21, whole genome shotgun sequence	9232..9669	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNYUJ010000023.1 Salmonella enterica strain PNUSAS391375 SAMN37855211-rid19847553.denovo.24, whole genome shotgun sequence	12696..13338																																																						avrA	ABNYUJ010000006.1	160564..161432	99.425	870	0						
GCA_032779945.1_PDT001941549.1_genomic.fna	Salmonella_enterica	0.5201	695.775 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYUN010000001.1 Salmonella enterica strain PNUSAS391289 SAMN37855205-rid19846383.denovo.01, whole genome shotgun sequence	642276..642713	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYUN010000026.1 Salmonella enterica strain PNUSAS391289 SAMN37855205-rid19846383.guided.15, whole genome shotgun sequence	2949..3386	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032779965.1_PDT001941551.1_genomic.fna	Salmonella_enterica	0.5222	391.763 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYUL010000001.1 Salmonella enterica strain PNUSAS391293 SAMN37855206-rid19847533.denovo.01, whole genome shotgun sequence	170812..171249	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYUL010000038.1 Salmonella enterica strain PNUSAS391293 SAMN37855206-rid19847533.guided.25, whole genome shotgun sequence	13312..13749	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.97	116 / 131	ABNYUL010000025.1 Salmonella enterica strain PNUSAS391293 SAMN37855206-rid19847533.denovo.28, whole genome shotgun sequence	513..628																																																						avrA	ABNYUL010000002.1	174879..175748	99.31	870	0						
GCA_032779985.1_PDT001941546.1_genomic.fna	Salmonella_enterica	0.5222	699.692 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYUO010000001.1 Salmonella enterica strain PNUSAS391304 SAMN37855199-rid19847523.denovo.01, whole genome shotgun sequence	596407..596844	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYUO010000018.1 Salmonella enterica strain PNUSAS391304 SAMN37855199-rid19847523.guided.13, whole genome shotgun sequence	6822..7259	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYUO010000002.1	544637..545505	99.425	870	0						
GCA_032780005.1_PDT001941550.1_genomic.fna	Salmonella_enterica	0.5222	494.795 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYUM010000003.1 Salmonella enterica strain PNUSAS391369 SAMN37855209-rid19846393.denovo.03, whole genome shotgun sequence	145395..145832	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYUM010000020.1 Salmonella enterica strain PNUSAS391369 SAMN37855209-rid19846393.guided.14, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYUM010000002.1	553621..554490	99.655	870	0						
GCA_032780025.1_PDT001941544.1_genomic.fna	Salmonella_enterica	0.5207	261.883 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYUP010000001.1 Salmonella enterica strain PNUSAS392092 SAMN37855165-rid19846343.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYUP010000047.1 Salmonella enterica strain PNUSAS392092 SAMN37855165-rid19846343.guided.31, whole genome shotgun sequence	20625..21062	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNYUP010000023.1 Salmonella enterica strain PNUSAS392092 SAMN37855165-rid19846343.denovo.23, whole genome shotgun sequence	34958..35491																																																						avrA	ABNYUP010000008.1	188218..189087	99.425	870	0						
GCA_032780045.1_PDT001941537.1_genomic.fna	Salmonella_enterica	0.5211	439.62 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYUR010000001.1 Salmonella enterica strain PNUSAS391371 SAMN37855156-rid19847483.denovo.01, whole genome shotgun sequence	442431..442868	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYUR010000026.1 Salmonella enterica strain PNUSAS391371 SAMN37855156-rid19847483.guided.16, whole genome shotgun sequence	754..1191	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNYUR010000018.1 Salmonella enterica strain PNUSAS391371 SAMN37855156-rid19847483.denovo.22, whole genome shotgun sequence	3007..3137																																																						avrA	ABNYUR010000002.1	515405..516273	99.195	870	0						
GCA_032780065.1_PDT001941540.1_genomic.fna	Salmonella_enterica	0.5209	709.617 KB	2	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNYUQ010000001.1 Salmonella enterica strain PNUSAS391407 SAMN37855163-rid19847493.denovo.01, whole genome shotgun sequence	416141..416578	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNYUQ010000021.1 Salmonella enterica strain PNUSAS391407 SAMN37855163-rid19847493.guided.15, whole genome shotgun sequence	9232..9669	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYUQ010000002.1	160638..161507	99.54	870	0						
GCA_032780085.1_PDT001785993.1_genomic.fna	Salmonella_enterica	0.5227	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col8282,IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYUS010000001.1 Salmonella enterica strain PNUSAS357244 SAMN35803774-rid18529043.denovo.01, whole genome shotgun sequence	574014..574451	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYUS010000040.1 Salmonella enterica strain PNUSAS357244 SAMN35803774-rid18529043.guided.25, whole genome shotgun sequence	3620..4057	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col8282	100	207 / 207	ABNYUS010000026.1 Salmonella enterica strain PNUSAS357244 SAMN35803774-rid18529043.denovo.29, whole genome shotgun sequence	414..620	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNYUS010000014.1 Salmonella enterica strain PNUSAS357244 SAMN35803774-rid18529043.denovo.14, whole genome shotgun sequence	71001..71142																																																avrA	ABNYUS010000002.1	179172..180041	99.655	870	0						
GCA_032780105.1_PDT001785992.1_genomic.fna	Salmonella_enterica	0.5225	469.274 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNYUU010000001.1 Salmonella enterica strain PNUSAS357265 SAMN35803728-rid18527473.denovo.01, whole genome shotgun sequence	1173403..1173840	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNYUU010000021.1 Salmonella enterica strain PNUSAS357265 SAMN35803728-rid18527473.guided.16, whole genome shotgun sequence	7146..7583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYUU010000003.1	140108..140977	99.54	870	0						
GCA_032780185.1_PDT001785987.1_genomic.fna	Salmonella_enterica	0.5228	496.85 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYUX010000001.1 Salmonella enterica strain PNUSAS357241 SAMN35803795-rid18522633.denovo.01, whole genome shotgun sequence	790284..790721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYUX010000032.1 Salmonella enterica strain PNUSAS357241 SAMN35803795-rid18522633.guided.25, whole genome shotgun sequence	26..463	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNYUX010000020.1 Salmonella enterica strain PNUSAS357241 SAMN35803795-rid18522633.denovo.23, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNYUX010000033.1 Salmonella enterica strain PNUSAS357241 SAMN35803795-rid18522633.guided.26, whole genome shotgun sequence	687..1331	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNYUX010000020.1 Salmonella enterica strain PNUSAS357241 SAMN35803795-rid18522633.denovo.23, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNYUX010000021.1 Salmonella enterica strain PNUSAS357241 SAMN35803795-rid18522633.denovo.24, whole genome shotgun sequence	967..1095		enterobacteriales	Col(pHAD28)	100	131 / 131	ABNYUX010000033.1 Salmonella enterica strain PNUSAS357241 SAMN35803795-rid18522633.guided.26, whole genome shotgun sequence	31..161																																									avrA	ABNYUX010000002.1	183135..184004	98.966	870	0						
GCA_032780225.1_PDT001785980.1_genomic.fna	Salmonella_enterica	0.5211	434.729 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYVB010000001.1 Salmonella enterica strain PNUSAS357273 SAMN35803736-rid18517173.denovo.01, whole genome shotgun sequence	601393..601830	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYVB010000026.1 Salmonella enterica strain PNUSAS357273 SAMN35803736-rid18517173.guided.20, whole genome shotgun sequence	5306..5743	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYVB010000010.1	140203..141071	99.195	870	0						
GCA_032780245.1_PDT001785981.1_genomic.fna	Salmonella_enterica	0.5225	407.904 KB	4	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNYVA010000001.1 Salmonella enterica strain PNUSAS357268 SAMN35803731-rid18525803.denovo.01, whole genome shotgun sequence	308085..308522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNYVA010000031.1 Salmonella enterica strain PNUSAS357268 SAMN35803731-rid18525803.guided.21, whole genome shotgun sequence	4460..4897	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032780265.1_PDT001785983.1_genomic.fna	Salmonella_enterica	0.5221	469.28 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pMET),IncI1-I(Alpha)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNYUZ010000001.1 Salmonella enterica strain PNUSAS357256 SAMN35803719-rid18529033.denovo.01, whole genome shotgun sequence	995380..995817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNYUZ010000025.1 Salmonella enterica strain PNUSAS357256 SAMN35803719-rid18529033.guided.20, whole genome shotgun sequence	1292..1729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pMET)	98.27	577 / 577	ABNYUZ010000018.1 Salmonella enterica strain PNUSAS357256 SAMN35803719-rid18529033.denovo.18, whole genome shotgun sequence	28348..28924	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNYUZ010000013.1 Salmonella enterica strain PNUSAS357256 SAMN35803719-rid18529033.denovo.13, whole genome shotgun sequence	74441..74582																																																avrA	ABNYUZ010000003.1	140108..140977	99.54	870	0						
GCA_032780285.1_PDT001785979.1_genomic.fna	Salmonella_enterica	0.5224	728.673 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYVC010000001.1 Salmonella enterica strain PNUSAS357278 SAMN35803680-rid18522623.denovo.01, whole genome shotgun sequence	685758..686195	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYVC010000018.1 Salmonella enterica strain PNUSAS357278 SAMN35803680-rid18522623.guided.13, whole genome shotgun sequence	8198..8635	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYVC010000003.1	561823..562693	99.656	871	0						
GCA_032780305.1_PDT001785978.1_genomic.fna	Salmonella_enterica	0.5214	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYVE010000001.1 Salmonella enterica strain PNUSAS357262 SAMN35803725-rid18527453.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYVE010000024.1 Salmonella enterica strain PNUSAS357262 SAMN35803725-rid18527453.guided.17, whole genome shotgun sequence	9465..9902	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYVE010000012.1 Salmonella enterica strain PNUSAS357262 SAMN35803725-rid18527453.denovo.12, whole genome shotgun sequence	40541..41183	enterobacteriales	IncFII(S)	100	262 / 262	ABNYVE010000016.1 Salmonella enterica strain PNUSAS357262 SAMN35803725-rid18527453.denovo.19, whole genome shotgun sequence	3394..3655																																																avrA	ABNYVE010000002.1	553572..554441	99.54	870	0						
GCA_032780325.1_PDT001785977.1_genomic.fna	Salmonella_enterica	0.5224	364.946 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNYVD010000001.1 Salmonella enterica strain PNUSAS357075 SAMN35802794-rid18522613.denovo.01, whole genome shotgun sequence	789132..789569	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNYVD010000041.1 Salmonella enterica strain PNUSAS357075 SAMN35802794-rid18522613.guided.26, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYVD010000006.1	131918..132787	98.966	870	0						
GCA_032780345.1_PDT001785976.1_genomic.fna	Salmonella_enterica	0.521	723.702 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX4	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYVF010000001.1 Salmonella enterica strain PNUSAS357259 SAMN35803722-rid18524223.denovo.01, whole genome shotgun sequence	597158..597595	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYVF010000023.1 Salmonella enterica strain PNUSAS357259 SAMN35803722-rid18524223.guided.17, whole genome shotgun sequence	9600..10037	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX4	100	374 / 374	ABNYVF010000012.1 Salmonella enterica strain PNUSAS357259 SAMN35803722-rid18524223.denovo.13, whole genome shotgun sequence	7852..8225																																																						avrA	ABNYVF010000002.1	553573..554442	99.77	870	0						
GCA_032780365.1_PDT001785970.1_genomic.fna	Salmonella_enterica	0.5221	737.474 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYVI010000001.1 Salmonella enterica strain PNUSAS357271 SAMN35803734-rid18517163.denovo.01, whole genome shotgun sequence	685758..686195	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYVI010000016.1 Salmonella enterica strain PNUSAS357271 SAMN35803734-rid18517163.guided.12, whole genome shotgun sequence	8503..8940	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYVI010000002.1	561823..562693	99.656	871	0						
GCA_032780375.1_PDT001785972.1_genomic.fna	Salmonella_enterica	0.5171	353.551 KB	5	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNYVG010000002.1 Salmonella enterica strain PNUSAS357275 SAMN35803677-rid18521163.denovo.02, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNYVG010000051.1 Salmonella enterica strain PNUSAS357275 SAMN35803677-rid18521163.guided.40, whole genome shotgun sequence	2995..3432	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNYVG010000009.1 Salmonella enterica strain PNUSAS357275 SAMN35803677-rid18521163.denovo.09, whole genome shotgun sequence	167529..168171																																																																	
GCA_032780395.1_PDT001785968.1_genomic.fna	Salmonella_enterica	0.5211	412.038 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYVJ010000001.1 Salmonella enterica strain PNUSAS357085 SAMN35802809-rid18527443.denovo.01, whole genome shotgun sequence	519318..519755	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYVJ010000028.1 Salmonella enterica strain PNUSAS357085 SAMN35802809-rid18527443.guided.19, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYVJ010000008.1	94979..95848	99.425	870	0						
GCA_032780465.1_PDT001941682.1_genomic.fna	Salmonella_enterica	0.5202	412.516 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYVL010000001.1 Salmonella enterica strain PNUSAS392270 SAMN37855460-rid19847233.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYVL010000028.1 Salmonella enterica strain PNUSAS392270 SAMN37855460-rid19847233.guided.20, whole genome shotgun sequence	9216..9653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYVL010000014.1 Salmonella enterica strain PNUSAS392270 SAMN37855460-rid19847233.denovo.14, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	ABNYVL010000014.1 Salmonella enterica strain PNUSAS392270 SAMN37855460-rid19847233.denovo.14, whole genome shotgun sequence	51883..52144		enterobacteriales	IncX1	98.66	374 / 374	ABNYVL010000015.1 Salmonella enterica strain PNUSAS392270 SAMN37855460-rid19847233.denovo.16, whole genome shotgun sequence	33735..34108																																									avrA	ABNYVL010000002.1	585484..586353	99.54	870	0						
GCA_032780505.1_PDT001941675.1_genomic.fna	Salmonella_enterica	0.522	388.383 KB	3	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYVN010000001.1 Salmonella enterica strain PNUSAS392235 SAMN37855423-rid19847173.denovo.01, whole genome shotgun sequence	442651..443088	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYVN010000024.1 Salmonella enterica strain PNUSAS392235 SAMN37855423-rid19847173.guided.19, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNYVN010000019.1 Salmonella enterica strain PNUSAS392235 SAMN37855423-rid19847173.denovo.22, whole genome shotgun sequence	546..674																																																						avrA	ABNYVN010000002.1	512168..513034	99.08	870	0						
GCA_032780545.1_PDT001941674.1_genomic.fna	Salmonella_enterica	0.5208	282.835 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYVO010000001.1 Salmonella enterica strain PNUSAS392242 SAMN37855426-rid19847163.denovo.01, whole genome shotgun sequence	591891..592328	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYVO010000045.1 Salmonella enterica strain PNUSAS392242 SAMN37855426-rid19847163.guided.26, whole genome shotgun sequence	38464..38901	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNYVO010000030.1 Salmonella enterica strain PNUSAS392242 SAMN37855426-rid19847163.denovo.33, whole genome shotgun sequence	10940..12145	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYVO010000048.1 Salmonella enterica strain PNUSAS392242 SAMN37855426-rid19847163.guided.34, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABNYVO010000002.1	540741..541610	99.885	870	0						
GCA_032780565.1_PDT001941657.1_genomic.fna	Salmonella_enterica	0.5226	349.795 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYVR010000001.1 Salmonella enterica strain PNUSAS392244 SAMN37855412-rid19847923.denovo.01, whole genome shotgun sequence	394631..395068	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYVR010000039.1 Salmonella enterica strain PNUSAS392244 SAMN37855412-rid19847923.guided.24, whole genome shotgun sequence	5340..5777	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYVR010000008.1	94166..95034	99.425	870	0						
GCA_032780585.1_PDT001941656.1_genomic.fna	Salmonella_enterica	0.5219	564.901 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYVS010000001.1 Salmonella enterica strain PNUSAS392252 SAMN37855415-rid19847063.denovo.01, whole genome shotgun sequence	510607..511044	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYVS010000026.1 Salmonella enterica strain PNUSAS392252 SAMN37855415-rid19847063.guided.19, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNYVS010000021.1 Salmonella enterica strain PNUSAS392252 SAMN37855415-rid19847063.denovo.25, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNYVS010000028.1 Salmonella enterica strain PNUSAS392252 SAMN37855415-rid19847063.guided.24, whole genome shotgun sequence	920..1564	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNYVS010000021.1 Salmonella enterica strain PNUSAS392252 SAMN37855415-rid19847063.denovo.25, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNYVS010000028.1 Salmonella enterica strain PNUSAS392252 SAMN37855415-rid19847063.guided.24, whole genome shotgun sequence	264..394																																																avrA	ABNYVS010000002.1	544643..545511	99.425	870	0						
GCA_032780605.1_PDT001941660.1_genomic.fna	Salmonella_enterica	0.5206	552.696 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYVQ010000001.1 Salmonella enterica strain PNUSAS392243 SAMN37855413-rid19847073.denovo.01, whole genome shotgun sequence	519770..520207	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYVQ010000025.1 Salmonella enterica strain PNUSAS392243 SAMN37855413-rid19847073.guided.17, whole genome shotgun sequence	8014..8451	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYVQ010000002.1	556463..557331	99.425	870	0						
GCA_032780785.1_PDT001941620.1_genomic.fna	Salmonella_enterica	0.5172	250.927 KB	6	aroC_488,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2058	48:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_488	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:z4,z32:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABNYWC010000027.1 Salmonella enterica strain PNUSAS391294 SAMN37855294-rid19846823.denovo.29, whole genome shotgun sequence	6573..7010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABNYWC010000047.1 Salmonella enterica strain PNUSAS391294 SAMN37855294-rid19846823.guided.32, whole genome shotgun sequence	4359..4796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032780805.1_PDT001941613.1_genomic.fna	Salmonella_enterica	0.5225	389.325 KB	3	aroC_543,dnaN_69,hemD_101,hisD_12,purE_370,sucA_130,thrA_347	2553	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_543	dnaN	100	100	dnaN_69	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_370	sucA	100	100	sucA_130	thrA	100	100	thrA_347	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNYWD010000001.1 Salmonella enterica strain PNUSAS391351 SAMN37855301-rid19847773.denovo.01, whole genome shotgun sequence	640233..640670	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNYWD010000021.1 Salmonella enterica strain PNUSAS391351 SAMN37855301-rid19847773.guided.17, whole genome shotgun sequence	2971..3408	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYWD010000002.1	515011..515880	99.31	870	0						
GCA_032780845.1_PDT001941612.1_genomic.fna	Salmonella_enterica	0.5222	392.607 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYWE010000001.1 Salmonella enterica strain PNUSAS391302 SAMN37855295-rid19846773.denovo.01, whole genome shotgun sequence	170656..171093	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYWE010000031.1 Salmonella enterica strain PNUSAS391302 SAMN37855295-rid19846773.guided.21, whole genome shotgun sequence	9910..10347	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYWE010000003.1	120799..121668	99.31	870	0						
GCA_032780865.1_PDT001941611.1_genomic.fna	Salmonella_enterica	0.5219	701.501 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYWF010000001.1 Salmonella enterica strain PNUSAS391350 SAMN37855296-rid19846763.denovo.01, whole genome shotgun sequence	510640..511077	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYWF010000019.1 Salmonella enterica strain PNUSAS391350 SAMN37855296-rid19846763.guided.14, whole genome shotgun sequence	7189..7626	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	ABNYWF010000015.1 Salmonella enterica strain PNUSAS391350 SAMN37855296-rid19846763.denovo.18, whole genome shotgun sequence	967..1118																																																						avrA	ABNYWF010000002.1	556162..557030	99.425	870	0						
GCA_032780885.1_PDT001941594.1_genomic.fna	Salmonella_enterica	0.5204	447.289 KB	4	aroC_41,dnaN_42,hemD_43,hisD_501,purE_9,sucA_12,thrA_2	1567	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_501	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYWJ010000001.1 Salmonella enterica strain PNUSAS391299 SAMN37855279-rid19846653.denovo.01, whole genome shotgun sequence	672080..672517	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYWJ010000034.1 Salmonella enterica strain PNUSAS391299 SAMN37855279-rid19846653.guided.16, whole genome shotgun sequence	9235..9672	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNYWJ010000009.1 Salmonella enterica strain PNUSAS391299 SAMN37855279-rid19846653.denovo.09, whole genome shotgun sequence	38587..39229																																																						avrA	ABNYWJ010000005.1	99833..100702	99.425	870	0						
GCA_032780905.1_PDT001941603.1_genomic.fna	Salmonella_enterica	0.5215	282.835 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	Col440I,ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYWH010000001.1 Salmonella enterica strain PNUSAS391288 SAMN37855293-rid19847743.denovo.01, whole genome shotgun sequence	582509..582946	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYWH010000032.1 Salmonella enterica strain PNUSAS391288 SAMN37855293-rid19847743.denovo.36, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYWH010000032.1 Salmonella enterica strain PNUSAS391288 SAMN37855293-rid19847743.denovo.36, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNYWH010000049.1 Salmonella enterica strain PNUSAS391288 SAMN37855293-rid19847743.guided.27, whole genome shotgun sequence	23228..23665	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYWH010000053.1 Salmonella enterica strain PNUSAS391288 SAMN37855293-rid19847743.guided.43, whole genome shotgun sequence	1685..2521	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYWH010000053.1 Salmonella enterica strain PNUSAS391288 SAMN37855293-rid19847743.guided.43, whole genome shotgun sequence	882..1685	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNYWH010000040.1 Salmonella enterica strain PNUSAS391288 SAMN37855293-rid19847743.denovo.46, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNYWH010000054.1 Salmonella enterica strain PNUSAS391288 SAMN37855293-rid19847743.guided.45, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNYWH010000032.1 Salmonella enterica strain PNUSAS391288 SAMN37855293-rid19847743.denovo.36, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNYWH010000053.1 Salmonella enterica strain PNUSAS391288 SAMN37855293-rid19847743.guided.43, whole genome shotgun sequence	6..821	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNYWH010000028.1 Salmonella enterica strain PNUSAS391288 SAMN37855293-rid19847743.denovo.29, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYWH010000051.1 Salmonella enterica strain PNUSAS391288 SAMN37855293-rid19847743.guided.31, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col440I	93.64	110 / 114	ABNYWH010000036.1 Salmonella enterica strain PNUSAS391288 SAMN37855293-rid19847743.denovo.40, whole genome shotgun sequence	1566..1675	enterobacteriales	ColRNAI	90.08	131 / 130	ABNYWH010000031.1 Salmonella enterica strain PNUSAS391288 SAMN37855293-rid19847743.denovo.35, whole genome shotgun sequence	3981..4111																																																avrA	ABNYWH010000002.1	508737..509606	99.885	870	0						
GCA_032780925.1_PDT001941606.1_genomic.fna	Salmonella_enterica	0.5157	353.462 KB	6	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_214,thrA_30	782	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_214	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNYWG010000003.1 Salmonella enterica strain PNUSAS391292 SAMN37855299-rid19846733.denovo.03, whole genome shotgun sequence	5018..5455	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNYWG010000049.1 Salmonella enterica strain PNUSAS391292 SAMN37855299-rid19846733.guided.29, whole genome shotgun sequence	3898..4335	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032780945.1_PDT001941592.1_genomic.fna	Salmonella_enterica	0.5212	444.983 KB	5	aroC_50,dnaN_80,hemD_25,hisD_85,purE_432,sucA_58,thrA_4	1607	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_432	sucA	100	100	sucA_58	thrA	100	100	thrA_4	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYWI010000003.1 Salmonella enterica strain PNUSAS391347 SAMN37855278-rid19847693.denovo.03, whole genome shotgun sequence	252025..252462	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYWI010000073.1 Salmonella enterica strain PNUSAS391347 SAMN37855278-rid19847693.guided.39, whole genome shotgun sequence	4157..4594	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNYWI010000029.1 Salmonella enterica strain PNUSAS391347 SAMN37855278-rid19847693.denovo.30, whole genome shotgun sequence	11447..12089	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABNYWI010000025.1 Salmonella enterica strain PNUSAS391347 SAMN37855278-rid19847693.denovo.25, whole genome shotgun sequence	18874..19456																																																											
GCA_032780965.1_PDT001941586.1_genomic.fna	Salmonella_enterica	0.5213	432.897 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNYWK010000002.1 Salmonella enterica strain PNUSAS391365 SAMN37855280-rid19847663.denovo.02, whole genome shotgun sequence	625237..625674	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNYWK010000029.1 Salmonella enterica strain PNUSAS391365 SAMN37855280-rid19847663.guided.21, whole genome shotgun sequence	13373..13810	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNYWK010000011.1 Salmonella enterica strain PNUSAS391365 SAMN37855280-rid19847663.denovo.11, whole genome shotgun sequence	108568..109210	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABNYWK010000018.1 Salmonella enterica strain PNUSAS391365 SAMN37855280-rid19847663.denovo.18, whole genome shotgun sequence	10978..11204																																																											
GCA_032780985.1_PDT001941581.1_genomic.fna	Salmonella_enterica	0.5171	294.541 KB	6	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(Yp),IncFII(pCRY)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNYWL010000002.1 Salmonella enterica strain PNUSAS391357 SAMN37855236-rid19847633.denovo.02, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNYWL010000052.1 Salmonella enterica strain PNUSAS391357 SAMN37855236-rid19847633.guided.40, whole genome shotgun sequence	3888..4325	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNYWL010000010.1 Salmonella enterica strain PNUSAS391357 SAMN37855236-rid19847633.denovo.10, whole genome shotgun sequence	163679..164321	enterobacteriales	IncFII(Yp)	99.57	230 / 230	ABNYWL010000020.1 Salmonella enterica strain PNUSAS391357 SAMN37855236-rid19847633.denovo.20, whole genome shotgun sequence	48566..48795		enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABNYWL010000029.1 Salmonella enterica strain PNUSAS391357 SAMN37855236-rid19847633.denovo.30, whole genome shotgun sequence	8802..9394																																																				
GCA_032781005.1_PDT001941572.1_genomic.fna	Salmonella_enterica	0.5205	285.618 KB	5	aroC_173,dnaN_442,hemD_352,hisD_566,purE_132,sucA_442,thrA_322	2130	41:z38:-	3	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),Col440I,Col440II,IncB/O/K/Z	aroC	100	100	aroC_173	dnaN	100	100	dnaN_442	hemD	100	100	hemD_352	hisD	100	100	hisD_566	purE	100	100	purE_132	sucA	100	100	sucA_442	thrA	100	100	thrA_322	41	z38	-	Salmonella enterica subspecies enterica (subspecies I)	Offa		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNYWO010000001.1 Salmonella enterica strain PNUSAS391326 SAMN37855231-rid19847603.denovo.01, whole genome shotgun sequence	562218..562655	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNYWO010000048.1 Salmonella enterica strain PNUSAS391326 SAMN37855231-rid19847603.guided.28, whole genome shotgun sequence	4583..5020	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNYWO010000019.1 Salmonella enterica strain PNUSAS391326 SAMN37855231-rid19847603.denovo.19, whole genome shotgun sequence	67394..68254	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNYWO010000049.1 Salmonella enterica strain PNUSAS391326 SAMN37855231-rid19847603.guided.34, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNYWO010000030.1 Salmonella enterica strain PNUSAS391326 SAMN37855231-rid19847603.denovo.33, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNYWO010000050.1 Salmonella enterica strain PNUSAS391326 SAMN37855231-rid19847603.guided.42, whole genome shotgun sequence	606..1250	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNYWO010000030.1 Salmonella enterica strain PNUSAS391326 SAMN37855231-rid19847603.denovo.33, whole genome shotgun sequence	1519..1649	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNYWO010000037.1 Salmonella enterica strain PNUSAS391326 SAMN37855231-rid19847603.denovo.41, whole genome shotgun sequence	687..817		enterobacteriales	Col440I	90.2	102 / 114	ABNYWO010000050.1 Salmonella enterica strain PNUSAS391326 SAMN37855231-rid19847603.guided.42, whole genome shotgun sequence	1..102		enterobacteriales	Col440II	97.16	282 / 282	ABNYWO010000028.1 Salmonella enterica strain PNUSAS391326 SAMN37855231-rid19847603.denovo.31, whole genome shotgun sequence	5136..5417		enterobacteriales	IncB/O/K/Z	100	151 / 151	ABNYWO010000019.1 Salmonella enterica strain PNUSAS391326 SAMN37855231-rid19847603.denovo.19, whole genome shotgun sequence	61025..61175																											avrA	ABNYWO010000002.1	591646..592515	98.966	870	0						
GCA_032781025.1_PDT001941564.1_genomic.fna	Salmonella_enterica	0.5219	271.889 KB	5	aroC_5,dnaN_14,hemD_21,hisD_9,purE_6,sucA_12,thrA_17	49	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYWP010000001.1 Salmonella enterica strain PNUSAS391379 SAMN37855220-rid19846483.denovo.01, whole genome shotgun sequence	640245..640682	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYWP010000036.1 Salmonella enterica strain PNUSAS391379 SAMN37855220-rid19846483.guided.27, whole genome shotgun sequence	4202..4639	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYWP010000003.1	140003..140872	99.54	870	0						
GCA_032781035.1_PDT001941578.1_genomic.fna	Salmonella_enterica	0.5196	485.388 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncI1-I(Alpha),IncI2(Delta)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYWM010000003.1 Salmonella enterica strain PNUSAS391377 SAMN37855221-rid19847623.denovo.03, whole genome shotgun sequence	451995..452432	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYWM010000040.1 Salmonella enterica strain PNUSAS391377 SAMN37855221-rid19847623.guided.27, whole genome shotgun sequence	13373..13810	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNYWM010000015.1 Salmonella enterica strain PNUSAS391377 SAMN37855221-rid19847623.denovo.15, whole genome shotgun sequence	80340..80982	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNYWM010000017.1 Salmonella enterica strain PNUSAS391377 SAMN37855221-rid19847623.denovo.17, whole genome shotgun sequence	72366..72507		enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABNYWM010000019.1 Salmonella enterica strain PNUSAS391377 SAMN37855221-rid19847623.denovo.19, whole genome shotgun sequence	29356..29677																																									avrA	ABNYWM010000004.1	139987..140856	99.425	870	0						
GCA_032781045.1_PDT001941576.1_genomic.fna	Salmonella_enterica	0.5201	540.009 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pCRY),IncI(Gamma)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYWN010000006.1 Salmonella enterica strain PNUSAS391384 SAMN37855226-rid19847613.denovo.06, whole genome shotgun sequence	83341..83778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYWN010000042.1 Salmonella enterica strain PNUSAS391384 SAMN37855226-rid19847613.guided.22, whole genome shotgun sequence	9265..9702	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNYWN010000019.1 Salmonella enterica strain PNUSAS391384 SAMN37855226-rid19847613.denovo.19, whole genome shotgun sequence	21147..21739	enterobacteriales	IncI(Gamma)	100	137 / 141	ABNYWN010000014.1 Salmonella enterica strain PNUSAS391384 SAMN37855226-rid19847613.denovo.14, whole genome shotgun sequence	77314..77450																																																											
GCA_032781085.1_PDT001941547.1_genomic.fna	Salmonella_enterica	0.5202	230.989 KB	7	aroC_188,dnaN_199,hemD_21,hisD_62,purE_36,sucA_39,thrA_190	735	8:z4,z32:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	1	parC_p.T57S	1	IncFII(pHN7A8)	aroC	100	100	aroC_188	dnaN	100	100	dnaN_199	hemD	100	100	hemD_21	hisD	100	100	hisD_62	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_190	8	z4,z32	-	Salmonella enterica subspecies enterica (subspecies I)	Tallahassee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYWQ010000002.1 Salmonella enterica strain PNUSAS391301 SAMN37855201-rid19846363.denovo.02, whole genome shotgun sequence	42613..43050	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYWQ010000065.1 Salmonella enterica strain PNUSAS391301 SAMN37855201-rid19846363.guided.51, whole genome shotgun sequence	2062..2499	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNYWQ010000023.1 Salmonella enterica strain PNUSAS391301 SAMN37855201-rid19846363.denovo.23, whole genome shotgun sequence	52339..53199	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNYWQ010000063.1 Salmonella enterica strain PNUSAS391301 SAMN37855201-rid19846363.guided.38, whole genome shotgun sequence	7296..8156	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pHN7A8)	96.92	260 / 260	ABNYWQ010000023.1 Salmonella enterica strain PNUSAS391301 SAMN37855201-rid19846363.denovo.23, whole genome shotgun sequence	40328..40587																																																						avrA	ABNYWQ010000004.1	156719..157588	99.655	870	0						
GCA_032781105.1_PDT001941554.1_genomic.fna	Salmonella_enterica	0.5206	355.242 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNYWR010000003.1 Salmonella enterica strain PNUSAS391297 SAMN37855208-rid19846413.denovo.03, whole genome shotgun sequence	352231..352668	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNYWR010000063.1 Salmonella enterica strain PNUSAS391297 SAMN37855208-rid19846413.guided.28, whole genome shotgun sequence	13373..13810	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABNYWR010000022.1 Salmonella enterica strain PNUSAS391297 SAMN37855208-rid19846413.denovo.22, whole genome shotgun sequence	12696..13338	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNYWR010000024.1 Salmonella enterica strain PNUSAS391297 SAMN37855208-rid19846413.denovo.24, whole genome shotgun sequence	20816..21408																																																avrA	ABNYWR010000009.1	148130..148998	99.425	870	0						
GCA_032781125.1_PDT001941542.1_genomic.fna	Salmonella_enterica	0.5174	350.066 KB	5	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNYWS010000001.1 Salmonella enterica strain PNUSAS391406 SAMN37855161-rid19847513.denovo.01, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNYWS010000047.1 Salmonella enterica strain PNUSAS391406 SAMN37855161-rid19847513.guided.31, whole genome shotgun sequence	3888..4325	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNYWS010000010.1 Salmonella enterica strain PNUSAS391406 SAMN37855161-rid19847513.denovo.10, whole genome shotgun sequence	103917..104559																																																																	
GCA_032781145.1_PDT001941534.1_genomic.fna	Salmonella_enterica	0.521	427.891 KB	3	aroC_15,dnaN_126,hemD_101,hisD_88,purE_8,sucA_19,thrA_18	446	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_126	hemD	100	100	hemD_101	hisD	100	100	hisD_88	purE	100	100	purE_8	sucA	100	100	sucA_19	thrA	100	100	thrA_18	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNYWU010000001.1 Salmonella enterica strain PNUSAS392091 SAMN37855153-rid19846293.denovo.01, whole genome shotgun sequence	1140691..1141128	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNYWU010000021.1 Salmonella enterica strain PNUSAS392091 SAMN37855153-rid19846293.guided.15, whole genome shotgun sequence	29621..30058	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYWU010000009.1	140240..141109	99.77	870	0						
GCA_032781155.1_PDT001941528.1_genomic.fna	Salmonella_enterica	0.522	273.151 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYWW010000001.1 Salmonella enterica strain PNUSAS392095 SAMN37855150-rid19846263.denovo.01, whole genome shotgun sequence	454795..455232	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYWW010000039.1 Salmonella enterica strain PNUSAS392095 SAMN37855150-rid19846263.guided.26, whole genome shotgun sequence	5168..5605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNYWW010000028.1 Salmonella enterica strain PNUSAS392095 SAMN37855150-rid19846263.denovo.31, whole genome shotgun sequence	1506..1636	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNYWW010000021.1 Salmonella enterica strain PNUSAS392095 SAMN37855150-rid19846263.denovo.21, whole genome shotgun sequence	34665..34806																																																avrA	ABNYWW010000009.1	39350..40219	98.966	870	0						
GCA_032781185.1_PDT001941536.1_genomic.fna	Salmonella_enterica	0.521	407.642 KB	4	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNYWT010000001.1 Salmonella enterica strain PNUSAS391360 SAMN37855160-rid19847473.denovo.01, whole genome shotgun sequence	307830..308267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNYWT010000030.1 Salmonella enterica strain PNUSAS391360 SAMN37855160-rid19847473.guided.20, whole genome shotgun sequence	4157..4594	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032781205.1_PDT001941527.1_genomic.fna	Salmonella_enterica	0.5208	252.425 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYWV010000002.1 Salmonella enterica strain PNUSAS392089 SAMN37855148-rid19846253.denovo.02, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYWV010000040.1 Salmonella enterica strain PNUSAS392089 SAMN37855148-rid19846253.guided.21, whole genome shotgun sequence	44294..44731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNYWV010000021.1 Salmonella enterica strain PNUSAS392089 SAMN37855148-rid19846253.denovo.22, whole genome shotgun sequence	34958..35491																																																						avrA	ABNYWV010000011.1	153502..154371	99.425	870	0						
GCA_032781245.1_PDT001941523.1_genomic.fna	Salmonella_enterica	0.5216	377.326 KB	4	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	2	Col156,IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYWX010000001.1 Salmonella enterica strain 23MD09GT01-S SAMN37854828-rid19846233.denovo.01, whole genome shotgun sequence	1111706..1112143	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYWX010000026.1 Salmonella enterica strain 23MD09GT01-S SAMN37854828-rid19846233.denovo.29, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYWX010000026.1 Salmonella enterica strain 23MD09GT01-S SAMN37854828-rid19846233.denovo.29, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYWX010000026.1 Salmonella enterica strain 23MD09GT01-S SAMN37854828-rid19846233.denovo.29, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYWX010000026.1 Salmonella enterica strain 23MD09GT01-S SAMN37854828-rid19846233.denovo.29, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYWX010000026.1 Salmonella enterica strain 23MD09GT01-S SAMN37854828-rid19846233.denovo.29, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNYWX010000043.1 Salmonella enterica strain 23MD09GT01-S SAMN37854828-rid19846233.guided.28, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNYWX010000043.1 Salmonella enterica strain 23MD09GT01-S SAMN37854828-rid19846233.guided.28, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNYWX010000043.1 Salmonella enterica strain 23MD09GT01-S SAMN37854828-rid19846233.guided.28, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNYWX010000043.1 Salmonella enterica strain 23MD09GT01-S SAMN37854828-rid19846233.guided.28, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNYWX010000043.1 Salmonella enterica strain 23MD09GT01-S SAMN37854828-rid19846233.guided.28, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNYWX010000045.1 Salmonella enterica strain 23MD09GT01-S SAMN37854828-rid19846233.guided.36, whole genome shotgun sequence	456..893	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNYWX010000024.1 Salmonella enterica strain 23MD09GT01-S SAMN37854828-rid19846233.denovo.26, whole genome shotgun sequence	3215..4414	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYWX010000044.1 Salmonella enterica strain 23MD09GT01-S SAMN37854828-rid19846233.guided.30, whole genome shotgun sequence	526..1725	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	ABNYWX010000025.1 Salmonella enterica strain 23MD09GT01-S SAMN37854828-rid19846233.denovo.27, whole genome shotgun sequence	792..945	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNYWX010000021.1 Salmonella enterica strain 23MD09GT01-S SAMN37854828-rid19846233.denovo.21, whole genome shotgun sequence	2208..2349																																																avrA	ABNYWX010000002.1	573274..574143	99.655	870	0						
GCA_032781265.1_PDT001941522.1_genomic.fna	Salmonella_enterica	0.5216	245.651 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYWY010000001.1 Salmonella enterica strain 23MD09GT02-S SAMN37854826-rid19846223.denovo.01, whole genome shotgun sequence	573953..574390	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYWY010000026.1 Salmonella enterica strain 23MD09GT02-S SAMN37854826-rid19846223.denovo.27, whole genome shotgun sequence	1657..2448	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYWY010000026.1 Salmonella enterica strain 23MD09GT02-S SAMN37854826-rid19846223.denovo.27, whole genome shotgun sequence	1657..2448	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNYWY010000053.1 Salmonella enterica strain 23MD09GT02-S SAMN37854826-rid19846223.guided.34, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYWY010000054.1 Salmonella enterica strain 23MD09GT02-S SAMN37854826-rid19846223.guided.38, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYWY010000054.1 Salmonella enterica strain 23MD09GT02-S SAMN37854826-rid19846223.guided.38, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	99.88	840/840	ABNYWY010000026.1 Salmonella enterica strain 23MD09GT02-S SAMN37854826-rid19846223.denovo.27, whole genome shotgun sequence	2953..3792	Sulfamethoxazole	U12338	sul1	99.88	840/840	ABNYWY010000054.1 Salmonella enterica strain 23MD09GT02-S SAMN37854826-rid19846223.guided.38, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYWY010000026.1 Salmonella enterica strain 23MD09GT02-S SAMN37854826-rid19846223.denovo.27, whole genome shotgun sequence	16309..17508	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYWY010000052.1 Salmonella enterica strain 23MD09GT02-S SAMN37854826-rid19846223.guided.33, whole genome shotgun sequence	477..1676	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYWY010000029.1 Salmonella enterica strain 23MD09GT02-S SAMN37854826-rid19846223.denovo.30, whole genome shotgun sequence	9109..9668																																																						avrA	ABNYWY010000002.1	94085..94954	99.655	870	0						
GCA_032781445.1_PDT001941678.1_genomic.fna	Salmonella_enterica	0.5212	185.71 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYXI010000001.1 Salmonella enterica strain PNUSAS392246 SAMN37855421-rid19847993.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYXI010000055.1 Salmonella enterica strain PNUSAS392246 SAMN37855421-rid19847993.guided.42, whole genome shotgun sequence	935..1372	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYXI010000006.1	154652..155520	99.77	870	0						
GCA_032781465.1_PDT001941684.1_genomic.fna	Salmonella_enterica	0.5214	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYXH010000001.1 Salmonella enterica strain PNUSAS392262 SAMN37855470-rid19848013.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYXH010000028.1 Salmonella enterica strain PNUSAS392262 SAMN37855470-rid19848013.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYXH010000017.1 Salmonella enterica strain PNUSAS392262 SAMN37855470-rid19848013.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNYXH010000019.1 Salmonella enterica strain PNUSAS392262 SAMN37855470-rid19848013.denovo.21, whole genome shotgun sequence	3392..3653																																																avrA	ABNYXH010000002.1	553636..554505	99.54	870	0						
GCA_032781485.1_PDT001941659.1_genomic.fna	Salmonella_enterica	0.5201	161.067 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNYXJ010000009.1 Salmonella enterica strain PNUSAS392251 SAMN37855416-rid19847943.denovo.09, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNYXJ010000058.1 Salmonella enterica strain PNUSAS392251 SAMN37855416-rid19847943.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032781505.1_PDT001941607.1_genomic.fna	Salmonella_enterica	0.5218	455.237 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYXK010000001.1 Salmonella enterica strain PNUSAS390801 SAMN37855303-rid19847753.denovo.01, whole genome shotgun sequence	116844..117281	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYXK010000040.1 Salmonella enterica strain PNUSAS390801 SAMN37855303-rid19847753.guided.25, whole genome shotgun sequence	9085..9522	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYXK010000002.1	499231..500099	99.425	870	0						
GCA_032781545.1_PDT001941585.1_genomic.fna	Salmonella_enterica	0.5217	455.402 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYXL010000001.1 Salmonella enterica strain PNUSAS391362 SAMN37855270-rid19846613.denovo.01, whole genome shotgun sequence	639284..639721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYXL010000036.1 Salmonella enterica strain PNUSAS391362 SAMN37855270-rid19846613.guided.23, whole genome shotgun sequence	1017..1454	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYXL010000003.1	498766..499634	99.425	870	0						
GCA_032781565.1_PDT001941541.1_genomic.fna	Salmonella_enterica	0.5213	696.297 KB	3	aroC_13,dnaN_11,hemD_315,hisD_15,purE_12,sucA_15,thrA_4	1675	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_315	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYXN010000001.1 Salmonella enterica strain PNUSAS391385 SAMN37855162-rid19847503.denovo.01, whole genome shotgun sequence	643035..643472	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYXN010000022.1 Salmonella enterica strain PNUSAS391385 SAMN37855162-rid19847503.guided.13, whole genome shotgun sequence	9257..9694	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032781585.1_PDT001941530.1_genomic.fna	Salmonella_enterica	0.5219	275.207 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYXO010000001.1 Salmonella enterica strain PNUSAS392093 SAMN37855155-rid19847443.denovo.01, whole genome shotgun sequence	381649..382086	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYXO010000041.1 Salmonella enterica strain PNUSAS392093 SAMN37855155-rid19847443.guided.31, whole genome shotgun sequence	25136..25573	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYXO010000003.1	218367..219235	99.77	870	0						
GCA_032781765.1_PDT001785935.1_genomic.fna	Salmonella_enterica	0.5217	374.311 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNYXY010000001.1 Salmonella enterica strain PNUSAS357148 SAMN35802875-rid18519733.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNYXY010000037.1 Salmonella enterica strain PNUSAS357148 SAMN35802875-rid18519733.guided.13, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNYXY010000023.1 Salmonella enterica strain PNUSAS357148 SAMN35802875-rid18519733.denovo.26, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNYXY010000025.1 Salmonella enterica strain PNUSAS357148 SAMN35802875-rid18519733.denovo.28, whole genome shotgun sequence	2528..2639																																																avrA	ABNYXY010000007.1	174277..175145	99.425	870	0						
GCA_032781825.1_PDT001785933.1_genomic.fna	Salmonella_enterica	0.5202	490.114 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYYB010000001.1 Salmonella enterica strain PNUSAS357141 SAMN35802873-rid18530413.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYYB010000022.1 Salmonella enterica strain PNUSAS357141 SAMN35802873-rid18530413.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYYB010000012.1 Salmonella enterica strain PNUSAS357141 SAMN35802873-rid18530413.denovo.14, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNYYB010000012.1 Salmonella enterica strain PNUSAS357141 SAMN35802873-rid18530413.denovo.14, whole genome shotgun sequence	53092..53353		enterobacteriales	IncX1	98.93	374 / 374	ABNYYB010000013.1 Salmonella enterica strain PNUSAS357141 SAMN35802873-rid18530413.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNYYB010000002.1	553690..554559	99.54	870	0						
GCA_032781845.1_PDT001785932.1_genomic.fna	Salmonella_enterica	0.5209	489.886 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYYA010000001.1 Salmonella enterica strain PNUSAS357151 SAMN35802870-rid18521123.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYYA010000022.1 Salmonella enterica strain PNUSAS357151 SAMN35802870-rid18521123.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYYA010000012.1 Salmonella enterica strain PNUSAS357151 SAMN35802870-rid18521123.denovo.14, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNYYA010000015.1 Salmonella enterica strain PNUSAS357151 SAMN35802870-rid18521123.denovo.18, whole genome shotgun sequence	3433..3694																																																avrA	ABNYYA010000002.1	553636..554505	99.54	870	0						
GCA_032781865.1_PDT001785930.1_genomic.fna	Salmonella_enterica	0.52	696.427 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYYC010000001.1 Salmonella enterica strain PNUSAS357142 SAMN35802855-rid18518203.denovo.01, whole genome shotgun sequence	482534..482971	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYYC010000024.1 Salmonella enterica strain PNUSAS357142 SAMN35802855-rid18518203.guided.14, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032781885.1_PDT001785928.1_genomic.fna	Salmonella_enterica	0.5209	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYYD010000001.1 Salmonella enterica strain PNUSAS357154 SAMN35802859-rid18528983.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYYD010000021.1 Salmonella enterica strain PNUSAS357154 SAMN35802859-rid18528983.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYYD010000012.1 Salmonella enterica strain PNUSAS357154 SAMN35802859-rid18528983.denovo.14, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABNYYD010000012.1 Salmonella enterica strain PNUSAS357154 SAMN35802859-rid18528983.denovo.14, whole genome shotgun sequence	53092..53353																																																avrA	ABNYYD010000002.1	553636..554505	99.54	870	0						
GCA_032781925.1_PDT001785924.1_genomic.fna	Salmonella_enterica	0.5192	552.779 KB	4	aroC_11,dnaN_10,hemD_25,hisD_1215,purE_10,sucA_35,thrA_4	5969	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_1215	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNYYF010000001.1 Salmonella enterica strain PNUSAS357153 SAMN35802860-rid18524153.denovo.01, whole genome shotgun sequence	466433..466870	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNYYF010000028.1 Salmonella enterica strain PNUSAS357153 SAMN35802860-rid18524153.guided.11, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNYYF010000012.1 Salmonella enterica strain PNUSAS357153 SAMN35802860-rid18524153.denovo.13, whole genome shotgun sequence	67316..67457																																																																	
GCA_032781935.1_PDT001785934.1_genomic.fna	Salmonella_enterica	0.5208	278.344 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYXZ010000001.1 Salmonella enterica strain PNUSAS357150 SAMN35802874-rid18524163.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYXZ010000045.1 Salmonella enterica strain PNUSAS357150 SAMN35802874-rid18524163.guided.20, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNYXZ010000029.1 Salmonella enterica strain PNUSAS357150 SAMN35802874-rid18524163.denovo.33, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYXZ010000048.1 Salmonella enterica strain PNUSAS357150 SAMN35802874-rid18524163.guided.32, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABNYXZ010000002.1	540735..541604	99.885	870	0						
GCA_032781965.1_PDT001785921.1_genomic.fna	Salmonella_enterica	0.5207	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	4	Col156,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYYH010000001.1 Salmonella enterica strain PNUSAS357138 SAMN35802843-rid18531633.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYYH010000028.1 Salmonella enterica strain PNUSAS357138 SAMN35802843-rid18531633.guided.15, whole genome shotgun sequence	12998..13435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col156	94.81	154 / 154	ABNYYH010000019.1 Salmonella enterica strain PNUSAS357138 SAMN35802843-rid18531633.denovo.22, whole genome shotgun sequence	792..945	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYYH010000013.1 Salmonella enterica strain PNUSAS357138 SAMN35802843-rid18531633.denovo.14, whole genome shotgun sequence	40576..41218		enterobacteriales	IncFII(S)	100	262 / 262	ABNYYH010000017.1 Salmonella enterica strain PNUSAS357138 SAMN35802843-rid18531633.denovo.20, whole genome shotgun sequence	3446..3707		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNYYH010000011.1 Salmonella enterica strain PNUSAS357138 SAMN35802843-rid18531633.denovo.11, whole genome shotgun sequence	82639..82780																																		avrA	ABNYYH010000002.1	553636..554505	99.54	870	0						
GCA_032781985.1_PDT001785923.1_genomic.fna	Salmonella_enterica	0.5209	490.262 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYYG010000001.1 Salmonella enterica strain PNUSAS357145 SAMN35802858-rid18531643.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYYG010000022.1 Salmonella enterica strain PNUSAS357145 SAMN35802858-rid18531643.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYYG010000012.1 Salmonella enterica strain PNUSAS357145 SAMN35802858-rid18531643.denovo.14, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNYYG010000015.1 Salmonella enterica strain PNUSAS357145 SAMN35802858-rid18531643.denovo.18, whole genome shotgun sequence	3395..3656																																																avrA	ABNYYG010000002.1	553407..554276	99.54	870	0						
GCA_032782045.1_PDT001785917.1_genomic.fna	Salmonella_enterica	0.5213	185.149 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYYL010000001.1 Salmonella enterica strain PNUSAS357135 SAMN35802846-rid18531623.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYYL010000053.1 Salmonella enterica strain PNUSAS357135 SAMN35802846-rid18531623.guided.43, whole genome shotgun sequence	2188..2625	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNYYL010000010.1	94133..95001	99.77	870	0						
GCA_032782065.1_PDT001785919.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYYJ010000001.1 Salmonella enterica strain PNUSAS357146 SAMN35802854-rid18527393.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYYJ010000022.1 Salmonella enterica strain PNUSAS357146 SAMN35802854-rid18527393.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYYJ010000012.1 Salmonella enterica strain PNUSAS357146 SAMN35802854-rid18527393.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNYYJ010000012.1 Salmonella enterica strain PNUSAS357146 SAMN35802854-rid18527393.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNYYJ010000002.1	553636..554505	99.54	870	0						
GCA_032782085.1_PDT001785916.1_genomic.fna	Salmonella_enterica	0.5224	650.093 KB	3	aroC_14,dnaN_7,hemD_3,hisD_12,purE_6,sucA_19,thrA_12	599	7:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_7	hemD	100	100	hemD_3	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_12	7	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Concord		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYYM010000001.1 Salmonella enterica strain PNUSAS357137 SAMN35802844-rid18530403.denovo.01, whole genome shotgun sequence	712576..713013	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYYM010000028.1 Salmonella enterica strain PNUSAS357137 SAMN35802844-rid18530403.guided.21, whole genome shotgun sequence	2259..2696	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYYM010000003.1	508777..509646	99.655	870	0						
GCA_032782105.1_PDT001785915.1_genomic.fna	Salmonella_enterica	0.5206	236.001 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYYN010000001.1 Salmonella enterica strain PNUSAS357092 SAMN35802841-rid18519713.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYYN010000053.1 Salmonella enterica strain PNUSAS357092 SAMN35802841-rid18519713.denovo.58, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYYN010000053.1 Salmonella enterica strain PNUSAS357092 SAMN35802841-rid18519713.denovo.58, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNYYN010000069.1 Salmonella enterica strain PNUSAS357092 SAMN35802841-rid18519713.guided.39, whole genome shotgun sequence	17197..17634	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNYYN010000072.1 Salmonella enterica strain PNUSAS357092 SAMN35802841-rid18519713.guided.55, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNYYN010000072.1 Salmonella enterica strain PNUSAS357092 SAMN35802841-rid18519713.guided.55, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNYYN010000060.1 Salmonella enterica strain PNUSAS357092 SAMN35802841-rid18519713.denovo.66, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNYYN010000073.1 Salmonella enterica strain PNUSAS357092 SAMN35802841-rid18519713.guided.65, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNYYN010000053.1 Salmonella enterica strain PNUSAS357092 SAMN35802841-rid18519713.denovo.58, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNYYN010000072.1 Salmonella enterica strain PNUSAS357092 SAMN35802841-rid18519713.guided.55, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNYYN010000040.1 Salmonella enterica strain PNUSAS357092 SAMN35802841-rid18519713.denovo.44, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNYYN010000071.1 Salmonella enterica strain PNUSAS357092 SAMN35802841-rid18519713.guided.43, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncY	99.74	765 / 765	ABNYYN010000048.1 Salmonella enterica strain PNUSAS357092 SAMN35802841-rid18519713.denovo.52, whole genome shotgun sequence	133..897																																																						avrA	ABNYYN010000002.1	467699..468568	99.885	870	0						
GCA_032782115.1_PDT001785914.1_genomic.fna	Salmonella_enterica	0.5212	476.885 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYYO010000001.1 Salmonella enterica strain PNUSAS357093 SAMN35802840-rid18524143.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYYO010000029.1 Salmonella enterica strain PNUSAS357093 SAMN35802840-rid18524143.guided.20, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYYO010000019.1 Salmonella enterica strain PNUSAS357093 SAMN35802840-rid18524143.denovo.21, whole genome shotgun sequence	6835..7477	enterobacteriales	IncFII(S)	100	262 / 262	ABNYYO010000021.1 Salmonella enterica strain PNUSAS357093 SAMN35802840-rid18524143.denovo.24, whole genome shotgun sequence	3392..3653																																																avrA	ABNYYO010000002.1	553286..554155	99.54	870	0						
GCA_032782165.1_PDT001785912.1_genomic.fna	Salmonella_enterica	0.5221	395.244 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNYYR010000003.1 Salmonella enterica strain PNUSAS357134 SAMN35802847-rid18522563.denovo.03, whole genome shotgun sequence	398418..398855	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNYYR010000031.1 Salmonella enterica strain PNUSAS357134 SAMN35802847-rid18522563.guided.24, whole genome shotgun sequence	1823..2260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYYR010000002.1	39414..40283	98.851	870	0						
GCA_032782185.1_PDT001785911.1_genomic.fna	Salmonella_enterica	0.5217	259.81 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	10	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYYQ010000001.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNYYQ010000023.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.denovo.23, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYYQ010000023.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.denovo.23, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYYQ010000032.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.denovo.35, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYYQ010000032.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.denovo.35, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABNYYQ010000041.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.denovo.51, whole genome shotgun sequence	93..908	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	X62115	aadA1	99.75	792/792	ABNYYQ010000048.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.guided.29, whole genome shotgun sequence	688..1479	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNYYQ010000048.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.guided.29, whole genome shotgun sequence	688..1479	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNYYQ010000051.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.guided.41, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNYYQ010000051.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.guided.41, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNYYQ010000054.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.guided.46, whole genome shotgun sequence	985..1422	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNYYQ010000056.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.guided.50, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	X62115	blaCTX-M-65	100	876/876	ABNYYQ010000037.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.denovo.42, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNYYQ010000052.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.guided.44, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNYYQ010000033.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.denovo.37, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNYYQ010000050.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.guided.36, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNYYQ010000023.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.denovo.23, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNYYQ010000048.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.guided.29, whole genome shotgun sequence	1984..2823	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNYYQ010000023.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.denovo.23, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNYYQ010000053.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.guided.45, whole genome shotgun sequence	1860..3059	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNYYQ010000030.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.denovo.33, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNYYQ010000055.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.guided.49, whole genome shotgun sequence	1264..1737	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNYYQ010000026.1 Salmonella enterica strain PNUSAS357132 SAMN35802849-rid18531603.denovo.27, whole genome shotgun sequence	9109..9668																																																						avrA	ABNYYQ010000002.1	150078..150947	99.655	870	0						
GCA_032782265.1_PDT001785904.1_genomic.fna	Salmonella_enterica	0.5222	206.273 KB	8	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(pCoo)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNYYW010000010.1 Salmonella enterica strain PNUSAS357079 SAMN35802803-rid18525703.denovo.10, whole genome shotgun sequence	123360..123797	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNYYW010000053.1 Salmonella enterica strain PNUSAS357079 SAMN35802803-rid18525703.guided.42, whole genome shotgun sequence	874..1311	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(pCoo)	95.06	263 / 262	ABNYYW010000019.1 Salmonella enterica strain PNUSAS357079 SAMN35802803-rid18525703.denovo.19, whole genome shotgun sequence	15707..15966																																																						avrA	ABNYYW010000001.1	458570..459439	99.655	870	0						
GCA_032782305.1_PDT001785902.1_genomic.fna	Salmonella_enterica	0.5215	412.182 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYYZ010000001.1 Salmonella enterica strain PNUSAS357077 SAMN35802801-rid18522553.denovo.01, whole genome shotgun sequence	769962..770399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYYZ010000035.1 Salmonella enterica strain PNUSAS357077 SAMN35802801-rid18522553.guided.20, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYYZ010000020.1 Salmonella enterica strain PNUSAS357077 SAMN35802801-rid18522553.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNYYZ010000017.1 Salmonella enterica strain PNUSAS357077 SAMN35802801-rid18522553.denovo.17, whole genome shotgun sequence	37108..37369																																																avrA	ABNYYZ010000002.1	174828..175697	99.54	870	0						
GCA_032782325.1_PDT001785900.1_genomic.fna	Salmonella_enterica	0.5202	385.034 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYYY010000001.1 Salmonella enterica strain PNUSAS357080 SAMN35802799-rid18518173.denovo.01, whole genome shotgun sequence	414575..415012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYYY010000039.1 Salmonella enterica strain PNUSAS357080 SAMN35802799-rid18518173.guided.16, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032782345.1_PDT001785899.1_genomic.fna	Salmonella_enterica	0.5214	328.015 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYZA010000001.1 Salmonella enterica strain PNUSAS357084 SAMN35802798-rid18522543.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYZA010000030.1 Salmonella enterica strain PNUSAS357084 SAMN35802798-rid18522543.guided.23, whole genome shotgun sequence	837..1274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYZA010000018.1 Salmonella enterica strain PNUSAS357084 SAMN35802798-rid18522543.denovo.18, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNYZA010000018.1 Salmonella enterica strain PNUSAS357084 SAMN35802798-rid18522543.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABNYZA010000005.1	174837..175706	99.54	870	0						
GCA_032782405.1_PDT001785897.1_genomic.fna	Salmonella_enterica	0.5198	356.726 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNYZC010000001.1 Salmonella enterica strain PNUSAS357072 SAMN35802793-rid18521113.denovo.01, whole genome shotgun sequence	477367..477804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNYZC010000052.1 Salmonella enterica strain PNUSAS357072 SAMN35802793-rid18521113.guided.25, whole genome shotgun sequence	24968..25405	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYZC010000010.1	140075..140943	99.195	870	0						
GCA_032782425.1_PDT001785896.1_genomic.fna	Salmonella_enterica	0.5199	525.966 KB	4	aroC_41,dnaN_42,hemD_299,hisD_58,purE_9,sucA_12,thrA_2	1606	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_299	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNYZE010000002.1 Salmonella enterica strain PNUSAS357074 SAMN35802796-rid18530383.denovo.02, whole genome shotgun sequence	510066..510503	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNYZE010000032.1 Salmonella enterica strain PNUSAS357074 SAMN35802796-rid18530383.guided.18, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYZE010000001.1	666516..667384	99.31	870	0						
GCA_032782665.1_PDT001941679.1_genomic.fna	Salmonella_enterica	0.5204	153.393 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNYZO010000009.1 Salmonella enterica strain PNUSAS392247 SAMN37855420-rid19847203.denovo.09, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNYZO010000062.1 Salmonella enterica strain PNUSAS392247 SAMN37855420-rid19847203.guided.52, whole genome shotgun sequence	1021..1455	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032782685.1_PDT001941590.1_genomic.fna	Salmonella_enterica	0.5218	391.761 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNYZQ010000001.1 Salmonella enterica strain PNUSAS391307 SAMN37855272-rid19846643.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNYZQ010000033.1 Salmonella enterica strain PNUSAS391307 SAMN37855272-rid19846643.guided.25, whole genome shotgun sequence	9391..9828	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYZQ010000003.1	360428..361297	99.31	870	0						
GCA_032782705.1_PDT001941569.1_genomic.fna	Salmonella_enterica	0.5204	741.464 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYZS010000001.1 Salmonella enterica strain PNUSAS391295 SAMN37855225-rid19846523.denovo.01, whole genome shotgun sequence	643233..643670	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYZS010000018.1 Salmonella enterica strain PNUSAS391295 SAMN37855225-rid19846523.guided.11, whole genome shotgun sequence	18133..18570	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNYZS010000009.1 Salmonella enterica strain PNUSAS391295 SAMN37855225-rid19846523.denovo.09, whole genome shotgun sequence	34958..35491																																																						avrA	ABNYZS010000002.1	544505..545373	99.425	870	0						
GCA_032782725.1_PDT001941587.1_genomic.fna	Salmonella_enterica	0.5214	654.532 KB	3	aroC_11,dnaN_10,hemD_13,hisD_13,purE_10,sucA_13,thrA_4	20	4:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNYZR010000002.1 Salmonella enterica strain PNUSAS391408 SAMN37855275-rid19846623.denovo.02, whole genome shotgun sequence	624923..625360	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNYZR010000022.1 Salmonella enterica strain PNUSAS391408 SAMN37855275-rid19846623.guided.17, whole genome shotgun sequence	13373..13810	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABNYZR010000005.1 Salmonella enterica strain PNUSAS391408 SAMN37855275-rid19846623.denovo.05, whole genome shotgun sequence	154988..155410	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABNYZR010000023.1 Salmonella enterica strain PNUSAS391408 SAMN37855275-rid19846623.guided.18, whole genome shotgun sequence	5477..5899	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032782745.1_PDT001941557.1_genomic.fna	Salmonella_enterica	0.5156	370.957 KB	6	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCRY)	aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABNYZU010000001.1 Salmonella enterica strain PNUSAS391376 SAMN37855210-rid19846433.denovo.01, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABNYZU010000040.1 Salmonella enterica strain PNUSAS391376 SAMN37855210-rid19846433.guided.29, whole genome shotgun sequence	362..799	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABNYZU010000023.1 Salmonella enterica strain PNUSAS391376 SAMN37855210-rid19846433.denovo.23, whole genome shotgun sequence	22133..22725																																																																	
GCA_032782755.1_PDT001941567.1_genomic.fna	Salmonella_enterica	0.522	496.515 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNYZT010000001.1 Salmonella enterica strain PNUSAS391330 SAMN37855233-rid19846503.denovo.01, whole genome shotgun sequence	790286..790723	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNYZT010000026.1 Salmonella enterica strain PNUSAS391330 SAMN37855233-rid19846503.guided.17, whole genome shotgun sequence	6865..7302	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYZT010000002.1	28833..29702	98.966	870	0						
GCA_032782785.1_PDT001941545.1_genomic.fna	Salmonella_enterica	0.5233	400.654 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNYZV010000001.1 Salmonella enterica strain PNUSAS391346 SAMN37855203-rid19846353.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNYZV010000027.1 Salmonella enterica strain PNUSAS391346 SAMN37855203-rid19846353.guided.20, whole genome shotgun sequence	9224..9661	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYZV010000002.1	149923..150792	99.655	870	0						
GCA_032782805.1_PDT001941543.1_genomic.fna	Salmonella_enterica	0.5215	660.35 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNYZW010000001.1 Salmonella enterica strain PNUSAS391361 SAMN37855158-rid19846333.denovo.01, whole genome shotgun sequence	596450..596887	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNYZW010000021.1 Salmonella enterica strain PNUSAS391361 SAMN37855158-rid19846333.guided.15, whole genome shotgun sequence	9216..9653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNYZW010000003.1	509486..510354	99.425	870	0						
GCA_032782885.1_PDT001785895.1_genomic.fna	Salmonella_enterica	0.5212	401.032 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNYZZ010000001.1 Salmonella enterica strain PNUSAS357073 SAMN35802795-rid18517113.denovo.01, whole genome shotgun sequence	769962..770399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNYZZ010000037.1 Salmonella enterica strain PNUSAS357073 SAMN35802795-rid18517113.guided.17, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNYZZ010000022.1 Salmonella enterica strain PNUSAS357073 SAMN35802795-rid18517113.denovo.24, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNYZZ010000024.1 Salmonella enterica strain PNUSAS357073 SAMN35802795-rid18517113.denovo.26, whole genome shotgun sequence	3439..3700																																																avrA	ABNYZZ010000002.1	174828..175697	99.54	870	0						
GCA_032782925.1_PDT001785890.1_genomic.fna	Salmonella_enterica	0.5192	270.809 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZAA010000001.1 Salmonella enterica strain PNUSAS357082 SAMN35802757-rid18518163.denovo.01, whole genome shotgun sequence	477367..477804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZAA010000051.1 Salmonella enterica strain PNUSAS357082 SAMN35802757-rid18518163.guided.26, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZAA010000013.1	106094..106962	99.195	870	0						
GCA_032782945.1_PDT001785889.1_genomic.fna	Salmonella_enterica	0.5202	371.034 KB	4	aroC_47,dnaN_98,hemD_36,hisD_152,purE_174,sucA_7,thrA_171	638	7:d:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_47	dnaN	100	100	dnaN_98	hemD	100	100	hemD_36	hisD	100	100	hisD_152	purE	100	100	purE_174	sucA	100	100	sucA_7	thrA	100	100	thrA_171	7	d	l,w	Salmonella enterica subspecies enterica (subspecies I)	Livingstone		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNZAB010000001.1 Salmonella enterica strain PNUSAS357076 SAMN35802774-rid18524123.denovo.01, whole genome shotgun sequence	165998..166435	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNZAB010000059.1 Salmonella enterica strain PNUSAS357076 SAMN35802774-rid18524123.guided.25, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032783005.1_PDT001785872.1_genomic.fna	Salmonella_enterica	0.5201	310.043 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZAD010000001.1 Salmonella enterica strain PNUSAS357065 SAMN35801847-rid18527363.denovo.01, whole genome shotgun sequence	477380..477817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZAD010000038.1 Salmonella enterica strain PNUSAS357065 SAMN35801847-rid18527363.guided.31, whole genome shotgun sequence	2745..3182	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZAD010000019.1 Salmonella enterica strain PNUSAS357065 SAMN35801847-rid18527363.denovo.20, whole genome shotgun sequence	2465..2998	enterobacteriales	IncX1	98.66	374 / 374	ABNZAD010000024.1 Salmonella enterica strain PNUSAS357065 SAMN35801847-rid18527363.denovo.25, whole genome shotgun sequence	6956..7329																																																avrA	ABNZAD010000017.1	39464..40334	99.196	871	0						
GCA_032783045.1_PDT001785868.1_genomic.fna	Salmonella_enterica	0.5199	382.242 KB	5	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNZAH010000002.1 Salmonella enterica strain PNUSAS357060 SAMN35801844-rid18519673.denovo.02, whole genome shotgun sequence	164302..164739	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNZAH010000030.1 Salmonella enterica strain PNUSAS357060 SAMN35801844-rid18519673.guided.13, whole genome shotgun sequence	16450..16887	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZAH010000001.1	526719..527588	99.425	870	0						
GCA_032783085.1_PDT001785866.1_genomic.fna	Salmonella_enterica	0.5218	414.375 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNZAJ010000008.1 Salmonella enterica strain PNUSAS357056 SAMN35801838-rid18531583.denovo.08, whole genome shotgun sequence	70822..71259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNZAJ010000034.1 Salmonella enterica strain PNUSAS357056 SAMN35801838-rid18531583.guided.24, whole genome shotgun sequence	10855..11292	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZAJ010000002.1	94228..95097	98.966	870	0						
GCA_032783105.1_PDT001785867.1_genomic.fna	Salmonella_enterica	0.5215	217.71 KB	9	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZAI010000003.1 Salmonella enterica strain PNUSAS357059 SAMN35801846-rid18521073.denovo.03, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZAI010000049.1 Salmonella enterica strain PNUSAS357059 SAMN35801846-rid18521073.guided.34, whole genome shotgun sequence	4382..4819	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZAI010000024.1 Salmonella enterica strain PNUSAS357059 SAMN35801846-rid18521073.denovo.24, whole genome shotgun sequence	6278..6811																																																						avrA	ABNZAI010000015.1	95198..96067	99.54	870	0						
GCA_032783125.1_PDT001785865.1_genomic.fna	Salmonella_enterica	0.5205	289.635 KB	6	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	-	Salmonella enterica subspecies enterica (subspecies I)	I 9:l,z28:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZAK010000004.1 Salmonella enterica strain PNUSAS357062 SAMN35801848-rid18522523.denovo.04, whole genome shotgun sequence	254882..255319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZAK010000031.1 Salmonella enterica strain PNUSAS357062 SAMN35801848-rid18522523.guided.21, whole genome shotgun sequence	21906..22343	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZAK010000001.1	497822..498690	99.425	870	0						
GCA_032783145.1_PDT001785864.1_genomic.fna	Salmonella_enterica	0.522	250.27 KB	7	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNZAL010000001.1 Salmonella enterica strain PNUSAS357064 SAMN35801850-rid18525673.denovo.01, whole genome shotgun sequence	293540..293977	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNZAL010000041.1 Salmonella enterica strain PNUSAS357064 SAMN35801850-rid18525673.guided.24, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNZAL010000030.1 Salmonella enterica strain PNUSAS357064 SAMN35801850-rid18525673.denovo.33, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNZAL010000031.1 Salmonella enterica strain PNUSAS357064 SAMN35801850-rid18525673.denovo.34, whole genome shotgun sequence	2528..2639																																																avrA	ABNZAL010000005.1	174111..174979	99.425	870	0						
GCA_032783165.1_PDT001785861.1_genomic.fna	Salmonella_enterica	0.5228	252.805 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZAO010000001.1 Salmonella enterica strain PNUSAS357055 SAMN35801851-rid18528913.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZAO010000036.1 Salmonella enterica strain PNUSAS357055 SAMN35801851-rid18528913.guided.27, whole genome shotgun sequence	10606..11043	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZAO010000006.1	39701..40570	99.655	870	0						
GCA_032783185.1_PDT001785863.1_genomic.fna	Salmonella_enterica	0.5219	236.943 KB	9	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNZAM010000001.1 Salmonella enterica strain PNUSAS357054 SAMN35801845-rid18518133.denovo.01, whole genome shotgun sequence	293540..293977	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNZAM010000045.1 Salmonella enterica strain PNUSAS357054 SAMN35801845-rid18518133.guided.28, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNZAM010000030.1 Salmonella enterica strain PNUSAS357054 SAMN35801845-rid18518133.denovo.33, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNZAM010000035.1 Salmonella enterica strain PNUSAS357054 SAMN35801845-rid18518133.denovo.38, whole genome shotgun sequence	2528..2639																																																avrA	ABNZAM010000002.1	174109..174977	99.425	870	0						
GCA_032783205.1_PDT001785858.1_genomic.fna	Salmonella_enterica	0.5218	310.27 KB	4	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZAP010000001.1 Salmonella enterica strain PNUSAS357063 SAMN35801840-rid18519663.denovo.01, whole genome shotgun sequence	481936..482373	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZAP010000026.1 Salmonella enterica strain PNUSAS357063 SAMN35801840-rid18519663.guided.20, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZAP010000005.1	39448..40317	99.77	870	0						
GCA_032783245.1_PDT001785857.1_genomic.fna	Salmonella_enterica	0.5211	401.349 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZAQ010000001.1 Salmonella enterica strain PNUSAS357052 SAMN35801841-rid18522513.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZAQ010000031.1 Salmonella enterica strain PNUSAS357052 SAMN35801841-rid18522513.guided.22, whole genome shotgun sequence	17718..18155	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZAQ010000022.1 Salmonella enterica strain PNUSAS357052 SAMN35801841-rid18522513.denovo.25, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABNZAQ010000023.1 Salmonella enterica strain PNUSAS357052 SAMN35801841-rid18522513.denovo.26, whole genome shotgun sequence	3385..3646																																																avrA	ABNZAQ010000014.1	39706..40575	99.54	870	0						
GCA_032783265.1_PDT001785856.1_genomic.fna	Salmonella_enterica	0.5206	412.174 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZAR010000001.1 Salmonella enterica strain PNUSAS357061 SAMN35801842-rid18531573.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZAR010000031.1 Salmonella enterica strain PNUSAS357061 SAMN35801842-rid18531573.guided.25, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZAR010000022.1 Salmonella enterica strain PNUSAS357061 SAMN35801842-rid18531573.denovo.24, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNZAR010000024.1 Salmonella enterica strain PNUSAS357061 SAMN35801842-rid18531573.denovo.27, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.93	374 / 374	ABNZAR010000018.1 Salmonella enterica strain PNUSAS357061 SAMN35801842-rid18531573.denovo.19, whole genome shotgun sequence	32011..32384																																									avrA	ABNZAR010000002.1	553419..554288	99.54	870	0						
GCA_032783285.1_PDT001785855.1_genomic.fna	Salmonella_enterica	0.5206	392.29 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZAS010000005.1 Salmonella enterica strain PNUSAS357057 SAMN35801858-rid18521063.denovo.05, whole genome shotgun sequence	255279..255716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZAS010000030.1 Salmonella enterica strain PNUSAS357057 SAMN35801858-rid18521063.guided.22, whole genome shotgun sequence	29651..30088	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZAS010000018.1 Salmonella enterica strain PNUSAS357057 SAMN35801858-rid18521063.denovo.18, whole genome shotgun sequence	34958..35491																																																						avrA	ABNZAS010000001.1	497989..498857	99.425	870	0						
GCA_032783305.1_PDT001785853.1_genomic.fna	Salmonella_enterica	0.5214	192.948 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZAT010000001.1 Salmonella enterica strain PNUSAS357053 SAMN35801843-rid18518123.denovo.01, whole genome shotgun sequence	145192..145629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZAT010000058.1 Salmonella enterica strain PNUSAS357053 SAMN35801843-rid18518123.guided.18, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZAT010000025.1 Salmonella enterica strain PNUSAS357053 SAMN35801843-rid18518123.denovo.26, whole genome shotgun sequence	44718..45360	enterobacteriales	IncFII(S)	100	262 / 262	ABNZAT010000025.1 Salmonella enterica strain PNUSAS357053 SAMN35801843-rid18518123.denovo.26, whole genome shotgun sequence	29372..29633																																																avrA	ABNZAT010000002.1	400677..401546	99.885	870	0						
GCA_032783325.1_PDT001785854.1_genomic.fna	Salmonella_enterica	0.5203	310.035 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZAV010000002.1 Salmonella enterica strain PNUSAS357058 SAMN35801837-rid18525663.denovo.02, whole genome shotgun sequence	477380..477817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZAV010000035.1 Salmonella enterica strain PNUSAS357058 SAMN35801837-rid18525663.guided.26, whole genome shotgun sequence	10606..11043	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZAV010000017.1 Salmonella enterica strain PNUSAS357058 SAMN35801837-rid18525663.denovo.17, whole genome shotgun sequence	2465..2998	enterobacteriales	IncX1	98.66	374 / 374	ABNZAV010000020.1 Salmonella enterica strain PNUSAS357058 SAMN35801837-rid18525663.denovo.20, whole genome shotgun sequence	6956..7329																																																avrA	ABNZAV010000010.1	150695..151565	99.196	871	0						
GCA_032783385.1_PDT001785849.1_genomic.fna	Salmonella_enterica	0.523	733.048 KB	2	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNZAX010000001.1 Salmonella enterica strain PNUSAS355433 SAMN35801786-rid18524083.denovo.01, whole genome shotgun sequence	1157705..1158142	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNZAX010000019.1 Salmonella enterica strain PNUSAS355433 SAMN35801786-rid18524083.guided.14, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZAX010000002.1	557904..558772	99.425	870	0						
GCA_032783405.1_PDT001785848.1_genomic.fna	Salmonella_enterica	0.5223	568.742 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	7	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,qnrB19,qnrB19,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	3	Col(MG828),Col(pHAD28),Col(pHAD28),IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZAY010000001.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.denovo.01, whole genome shotgun sequence	150017..150454	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZAY010000029.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.guided.13, whole genome shotgun sequence	17592..18029	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNZAY010000017.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.denovo.20, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNZAY010000031.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.guided.22, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNZAY010000017.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.denovo.20, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNZAY010000032.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.guided.26, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNZAY010000022.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.denovo.28, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNZAY010000033.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.guided.27, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul1	100	840/840	ABNZAY010000017.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.denovo.20, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABNZAY010000031.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.guided.22, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNZAY010000017.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.denovo.20, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNZAY010000031.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.guided.22, whole genome shotgun sequence	9840..11114	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNZAY010000017.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.denovo.20, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABNZAY010000031.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.guided.22, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(MG828)	94.19	258 / 262	ABNZAY010000023.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.denovo.29, whole genome shotgun sequence	769..1026	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNZAY010000022.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.denovo.28, whole genome shotgun sequence	1150..1280		enterobacteriales	Col(pHAD28)	100	131 / 131	ABNZAY010000033.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.guided.27, whole genome shotgun sequence	2044..2174		enterobacteriales	IncR	100	251 / 251	ABNZAY010000016.1 Salmonella enterica strain PNUSAS357027 SAMN35801782-rid18519653.denovo.18, whole genome shotgun sequence	4434..4684																																		avrA	ABNZAY010000003.1	553351..554220	99.77	870	0						
GCA_032783425.1_PDT001785847.1_genomic.fna	Salmonella_enterica	0.5223	430.195 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZAZ010000001.1 Salmonella enterica strain PNUSAS357030 SAMN35801778-rid18522503.denovo.01, whole genome shotgun sequence	475473..475910	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZAZ010000026.1 Salmonella enterica strain PNUSAS357030 SAMN35801778-rid18522503.guided.20, whole genome shotgun sequence	21039..21476	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZAZ010000012.1	93870..94738	99.195	870	0						
GCA_032783445.1_PDT001785843.1_genomic.fna	Salmonella_enterica	0.5208	465.902 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZBE010000001.1 Salmonella enterica strain PNUSAS357022 SAMN35801765-rid18518113.denovo.01, whole genome shotgun sequence	563293..563730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZBE010000024.1 Salmonella enterica strain PNUSAS357022 SAMN35801765-rid18518113.guided.17, whole genome shotgun sequence	153..590	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZBE010000010.1	157271..158139	99.195	870	0						
GCA_032783465.1_PDT001785845.1_genomic.fna	Salmonella_enterica	0.5221	762.445 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZBA010000001.1 Salmonella enterica strain PNUSAS357021 SAMN35801759-rid18522493.denovo.01, whole genome shotgun sequence	481947..482384	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZBA010000019.1 Salmonella enterica strain PNUSAS357021 SAMN35801759-rid18522493.guided.14, whole genome shotgun sequence	1958..2395	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZBA010000004.1	553696..554565	99.655	870	0						
GCA_032783485.1_PDT001785842.1_genomic.fna	Salmonella_enterica	0.5209	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZBD010000001.1 Salmonella enterica strain PNUSAS357035 SAMN35801776-rid18527293.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZBD010000020.1 Salmonella enterica strain PNUSAS357035 SAMN35801776-rid18527293.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZBD010000012.1 Salmonella enterica strain PNUSAS357035 SAMN35801776-rid18527293.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNZBD010000012.1 Salmonella enterica strain PNUSAS357035 SAMN35801776-rid18527293.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABNZBD010000002.1	553636..554505	99.54	870	0						
GCA_032783505.1_PDT001785840.1_genomic.fna	Salmonella_enterica	0.5224	526.729 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZBB010000001.1 Salmonella enterica strain PNUSAS357025 SAMN35801764-rid18527283.denovo.01, whole genome shotgun sequence	615967..616404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZBB010000023.1 Salmonella enterica strain PNUSAS357025 SAMN35801764-rid18527283.guided.14, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZBB010000003.1	150314..151183	99.655	870	0						
GCA_032783525.1_PDT001785839.1_genomic.fna	Salmonella_enterica	0.5214	489.854 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZBC010000001.1 Salmonella enterica strain PNUSAS357031 SAMN35801780-rid18524073.denovo.01, whole genome shotgun sequence	534622..535059	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZBC010000032.1 Salmonella enterica strain PNUSAS357031 SAMN35801780-rid18524073.guided.20, whole genome shotgun sequence	1951..2388	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZBC010000013.1 Salmonella enterica strain PNUSAS357031 SAMN35801780-rid18524073.denovo.13, whole genome shotgun sequence	40541..41183	enterobacteriales	IncFII(S)	100	262 / 262	ABNZBC010000015.1 Salmonella enterica strain PNUSAS357031 SAMN35801780-rid18524073.denovo.16, whole genome shotgun sequence	3392..3653																																																avrA	ABNZBC010000002.1	553181..554050	99.54	870	0						
GCA_032783545.1_PDT001785837.1_genomic.fna	Salmonella_enterica	0.5218	762.383 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(pCoo),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZBG010000001.1 Salmonella enterica strain PNUSAS357020 SAMN35801783-rid18524063.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZBG010000025.1 Salmonella enterica strain PNUSAS357020 SAMN35801783-rid18524063.guided.19, whole genome shotgun sequence	6591..7028	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(pCoo)	95.06	263 / 262	ABNZBG010000016.1 Salmonella enterica strain PNUSAS357020 SAMN35801783-rid18524063.denovo.16, whole genome shotgun sequence	14810..15069	enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNZBG010000015.1 Salmonella enterica strain PNUSAS357020 SAMN35801783-rid18524063.denovo.15, whole genome shotgun sequence	16171..16312																																																avrA	ABNZBG010000004.1	553676..554545	99.655	870	0						
GCA_032783565.1_PDT001785838.1_genomic.fna	Salmonella_enterica	0.5209	529.542 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),ColRNAI,IncI1-I(Alpha)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNZBF010000001.1 Salmonella enterica strain PNUSAS357037 SAMN35801774-rid18521053.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNZBF010000023.1 Salmonella enterica strain PNUSAS357037 SAMN35801774-rid18521053.guided.10, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNZBF010000017.1 Salmonella enterica strain PNUSAS357037 SAMN35801774-rid18521053.denovo.20, whole genome shotgun sequence	239..369	enterobacteriales	ColRNAI	90.08	131 / 130	ABNZBF010000019.1 Salmonella enterica strain PNUSAS357037 SAMN35801774-rid18521053.denovo.22, whole genome shotgun sequence	255..385		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNZBF010000011.1 Salmonella enterica strain PNUSAS357037 SAMN35801774-rid18521053.denovo.12, whole genome shotgun sequence	69889..70030																																									avrA	ABNZBF010000002.1	561483..562352	99.425	870	0						
GCA_032783585.1_PDT001785836.1_genomic.fna	Salmonella_enterica	0.5221	762.435 KB	2	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZBH010000001.1 Salmonella enterica strain PNUSAS357019 SAMN35801784-rid18531553.denovo.01, whole genome shotgun sequence	1363760..1364197	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZBH010000017.1 Salmonella enterica strain PNUSAS357019 SAMN35801784-rid18531553.guided.12, whole genome shotgun sequence	2060..2497	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZBH010000003.1	553702..554571	99.655	870	0						
GCA_032783605.1_PDT001785835.1_genomic.fna	Salmonella_enterica	0.5222	395.178 KB	4	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZBI010000001.1 Salmonella enterica strain PNUSAS357029 SAMN35801753-rid18522483.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZBI010000026.1 Salmonella enterica strain PNUSAS357029 SAMN35801753-rid18522483.guided.20, whole genome shotgun sequence	8..445	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZBI010000003.1	453055..453924	99.31	870	0						
GCA_032783625.1_PDT001785834.1_genomic.fna	Salmonella_enterica	0.522	727.316 KB	2	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNZBJ010000001.1 Salmonella enterica strain PNUSAS357036 SAMN35801767-rid18525653.denovo.01, whole genome shotgun sequence	1381534..1381971	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNZBJ010000013.1 Salmonella enterica strain PNUSAS357036 SAMN35801767-rid18525653.guided.12, whole genome shotgun sequence	589..1026	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZBJ010000003.1	93998..94867	99.54	870	0						
GCA_032783645.1_PDT001785833.1_genomic.fna	Salmonella_enterica	0.5206	696.418 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZBK010000001.1 Salmonella enterica strain PNUSAS357018 SAMN35801772-rid18518103.denovo.01, whole genome shotgun sequence	642723..643160	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZBK010000017.1 Salmonella enterica strain PNUSAS357018 SAMN35801772-rid18518103.guided.13, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032783665.1_PDT001785831.1_genomic.fna	Salmonella_enterica	0.5214	521.573 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNZBM010000001.1 Salmonella enterica strain PNUSAS357041 SAMN35801770-rid18528883.denovo.01, whole genome shotgun sequence	779764..780201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNZBM010000020.1 Salmonella enterica strain PNUSAS357041 SAMN35801770-rid18528883.guided.15, whole genome shotgun sequence	7957..8394	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZBM010000002.1	409585..410454	99.425	870	0						
GCA_032783685.1_PDT001785832.1_genomic.fna	Salmonella_enterica	0.5224	647.513 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZBL010000001.1 Salmonella enterica strain PNUSAS357034 SAMN35801758-rid18527273.denovo.01, whole genome shotgun sequence	681973..682410	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZBL010000021.1 Salmonella enterica strain PNUSAS357034 SAMN35801758-rid18527273.guided.16, whole genome shotgun sequence	6209..6646	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZBL010000003.1	563309..564178	99.77	870	0						
GCA_032783705.1_PDT001785830.1_genomic.fna	Salmonella_enterica	0.5206	490.114 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZBO010000001.1 Salmonella enterica strain PNUSAS357017 SAMN35801766-rid18531543.denovo.01, whole genome shotgun sequence	498713..499150	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZBO010000028.1 Salmonella enterica strain PNUSAS357017 SAMN35801766-rid18531543.guided.19, whole genome shotgun sequence	5223..5660	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZBO010000014.1 Salmonella enterica strain PNUSAS357017 SAMN35801766-rid18531543.denovo.14, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABNZBO010000018.1 Salmonella enterica strain PNUSAS357017 SAMN35801766-rid18531543.denovo.20, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	98.93	374 / 374	ABNZBO010000015.1 Salmonella enterica strain PNUSAS357017 SAMN35801766-rid18531543.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNZBO010000002.1	553690..554559	99.54	870	0						
GCA_032783805.1_PDT001941691.1_genomic.fna	Salmonella_enterica	0.5202	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA7,dfrA7	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNZBT010000016.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.denovo.16, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZBT010000051.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.denovo.56, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNZBT010000051.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.denovo.56, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	ABNZBT010000065.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.guided.37, whole genome shotgun sequence	15238..15672	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZBT010000069.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.guided.55, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNZBT010000069.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.guided.55, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNZBT010000058.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.denovo.64, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZBT010000070.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.guided.63, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	ABNZBT010000044.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.denovo.48, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	ABNZBT010000068.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.guided.47, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	ABNZBT010000044.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.denovo.48, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	ABNZBT010000051.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.denovo.56, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABNZBT010000068.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.guided.47, whole genome shotgun sequence	7991..8830	Sulfamethoxazole	U12338	sul2	100	816/816	ABNZBT010000069.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.guided.55, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	ABNZBT010000044.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.denovo.48, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	ABNZBT010000068.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.guided.47, whole genome shotgun sequence	6947..7420	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	ABNZBT010000018.1 Salmonella enterica strain PNUSAS392267 SAMN37855464-rid19847293.denovo.18, whole genome shotgun sequence	23493..24367																																																																	
GCA_032783825.1_PDT001941671.1_genomic.fna	Salmonella_enterica	0.5213	342.889 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZBS010000001.1 Salmonella enterica strain PNUSAS392236 SAMN37855430-rid19847143.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZBS010000029.1 Salmonella enterica strain PNUSAS392236 SAMN37855430-rid19847143.guided.22, whole genome shotgun sequence	7164..7601	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZBS010000019.1 Salmonella enterica strain PNUSAS392236 SAMN37855430-rid19847143.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNZBS010000020.1 Salmonella enterica strain PNUSAS392236 SAMN37855430-rid19847143.denovo.23, whole genome shotgun sequence	3446..3707																																																avrA	ABNZBS010000002.1	553184..554053	99.54	870	0						
GCA_032783845.1_PDT001941532.1_genomic.fna	Salmonella_enterica	0.5205	191.345 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_150,thrA_22	464	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_150	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZBV010000003.1 Salmonella enterica strain PNUSAS392088 SAMN37855154-rid19847463.denovo.03, whole genome shotgun sequence	378467..378904	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZBV010000056.1 Salmonella enterica strain PNUSAS392088 SAMN37855154-rid19847463.guided.19, whole genome shotgun sequence	44304..44741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNZBV010000024.1 Salmonella enterica strain PNUSAS392088 SAMN37855154-rid19847463.denovo.25, whole genome shotgun sequence	30042..30684																																																																	
GCA_032783865.1_PDT001941531.1_genomic.fna	Salmonella_enterica	0.5211	489.739 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZBU010000001.1 Salmonella enterica strain PNUSAS392090 SAMN37855152-rid19847453.denovo.01, whole genome shotgun sequence	815101..815538	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZBU010000029.1 Salmonella enterica strain PNUSAS392090 SAMN37855152-rid19847453.guided.20, whole genome shotgun sequence	12429..12866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZBU010000017.1 Salmonella enterica strain PNUSAS392090 SAMN37855152-rid19847453.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNZBU010000018.1 Salmonella enterica strain PNUSAS392090 SAMN37855152-rid19847453.denovo.21, whole genome shotgun sequence	3408..3669																																																avrA	ABNZBU010000002.1	552807..553676	99.54	870	0						
GCA_032783885.1_PDT001941521.1_genomic.fna	Salmonella_enterica	0.5197	525.19 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZBW010000001.1 Salmonella enterica strain 23MD09CL01-S SAMN37854827-rid19847413.denovo.01, whole genome shotgun sequence	502483..502920	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNZBW010000018.1 Salmonella enterica strain 23MD09CL01-S SAMN37854827-rid19847413.denovo.18, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZBW010000018.1 Salmonella enterica strain 23MD09CL01-S SAMN37854827-rid19847413.denovo.18, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABNZBW010000037.1 Salmonella enterica strain 23MD09CL01-S SAMN37854827-rid19847413.guided.23, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZBW010000037.1 Salmonella enterica strain 23MD09CL01-S SAMN37854827-rid19847413.guided.23, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.95	438/438	ABNZBW010000038.1 Salmonella enterica strain 23MD09CL01-S SAMN37854827-rid19847413.guided.25, whole genome shotgun sequence	5183..5620	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABNZBW010000018.1 Salmonella enterica strain 23MD09CL01-S SAMN37854827-rid19847413.denovo.18, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNZBW010000037.1 Salmonella enterica strain 23MD09CL01-S SAMN37854827-rid19847413.guided.23, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNZBW010000018.1 Salmonella enterica strain 23MD09CL01-S SAMN37854827-rid19847413.denovo.18, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZBW010000037.1 Salmonella enterica strain 23MD09CL01-S SAMN37854827-rid19847413.guided.23, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNZBW010000022.1 Salmonella enterica strain 23MD09CL01-S SAMN37854827-rid19847413.denovo.24, whole genome shotgun sequence	9109..9668																																																						avrA	ABNZBW010000004.1	145724..146593	98.966	870	0						
GCA_032784005.1_PDT001785841.1_genomic.fna	Salmonella_enterica	0.5201	223.58 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	IncX1,IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZCD010000001.1 Salmonella enterica strain PNUSAS357032 SAMN35801762-rid18528893.denovo.01, whole genome shotgun sequence	582474..582911	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZCD010000043.1 Salmonella enterica strain PNUSAS357032 SAMN35801762-rid18528893.denovo.47, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZCD010000043.1 Salmonella enterica strain PNUSAS357032 SAMN35801762-rid18528893.denovo.47, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNZCD010000056.1 Salmonella enterica strain PNUSAS357032 SAMN35801762-rid18528893.guided.46, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZCD010000056.1 Salmonella enterica strain PNUSAS357032 SAMN35801762-rid18528893.guided.46, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNZCD010000057.1 Salmonella enterica strain PNUSAS357032 SAMN35801762-rid18528893.guided.48, whole genome shotgun sequence	3289..3726	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNZCD010000045.1 Salmonella enterica strain PNUSAS357032 SAMN35801762-rid18528893.denovo.51, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZCD010000058.1 Salmonella enterica strain PNUSAS357032 SAMN35801762-rid18528893.guided.50, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNZCD010000043.1 Salmonella enterica strain PNUSAS357032 SAMN35801762-rid18528893.denovo.47, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNZCD010000056.1 Salmonella enterica strain PNUSAS357032 SAMN35801762-rid18528893.guided.46, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNZCD010000035.1 Salmonella enterica strain PNUSAS357032 SAMN35801762-rid18528893.denovo.36, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZCD010000054.1 Salmonella enterica strain PNUSAS357032 SAMN35801762-rid18528893.guided.42, whole genome shotgun sequence	2906..4111	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncX1	98.66	374 / 374	ABNZCD010000032.1 Salmonella enterica strain PNUSAS357032 SAMN35801762-rid18528893.denovo.32, whole genome shotgun sequence	6956..7329	enterobacteriales	IncY	99.74	765 / 765	ABNZCD010000015.1 Salmonella enterica strain PNUSAS357032 SAMN35801762-rid18528893.denovo.15, whole genome shotgun sequence	38912..39676																																																avrA	ABNZCD010000002.1	93863..94732	99.885	870	0						
GCA_032784025.1_PDT001785829.1_genomic.fna	Salmonella_enterica	0.5216	206.212 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX4	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZCC010000001.1 Salmonella enterica strain PNUSAS357026 SAMN35801775-rid18524053.denovo.01, whole genome shotgun sequence	368571..369008	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZCC010000041.1 Salmonella enterica strain PNUSAS357026 SAMN35801775-rid18524053.guided.33, whole genome shotgun sequence	4055..4492	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX4	98.74	712 / 712	ABNZCC010000028.1 Salmonella enterica strain PNUSAS357026 SAMN35801775-rid18524053.denovo.28, whole genome shotgun sequence	2444..3155																																																																	
GCA_032784045.1_PDT001785828.1_genomic.fna	Salmonella_enterica	0.5216	430.195 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZCE010000001.1 Salmonella enterica strain PNUSAS357038 SAMN35801773-rid18517073.denovo.01, whole genome shotgun sequence	560095..560532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZCE010000030.1 Salmonella enterica strain PNUSAS357038 SAMN35801773-rid18517073.guided.22, whole genome shotgun sequence	2995..3432	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZCE010000010.1	169436..170304	99.195	870	0						
GCA_032784065.1_PDT001785827.1_genomic.fna	Salmonella_enterica	0.5215	238.494 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,sul1,sul2,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		2	Col(pHAD28),ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZCF010000001.1 Salmonella enterica strain 23MN03CL01-S1 SAMN35801630-rid18525643.denovo.01, whole genome shotgun sequence	381670..382107	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNZCF010000031.1 Salmonella enterica strain 23MN03CL01-S1 SAMN35801630-rid18525643.denovo.32, whole genome shotgun sequence	12506..13408	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNZCF010000031.1 Salmonella enterica strain 23MN03CL01-S1 SAMN35801630-rid18525643.denovo.32, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNZCF010000053.1 Salmonella enterica strain 23MN03CL01-S1 SAMN35801630-rid18525643.guided.38, whole genome shotgun sequence	12400..12837	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNZCF010000057.1 Salmonella enterica strain 23MN03CL01-S1 SAMN35801630-rid18525643.guided.43, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNZCF010000058.1 Salmonella enterica strain 23MN03CL01-S1 SAMN35801630-rid18525643.guided.47, whole genome shotgun sequence	2402..3193	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNZCF010000031.1 Salmonella enterica strain 23MN03CL01-S1 SAMN35801630-rid18525643.denovo.32, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul2	100	816/816	ABNZCF010000032.1 Salmonella enterica strain 23MN03CL01-S1 SAMN35801630-rid18525643.denovo.33, whole genome shotgun sequence	13256..14071	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZCF010000055.1 Salmonella enterica strain 23MN03CL01-S1 SAMN35801630-rid18525643.guided.41, whole genome shotgun sequence	3155..3970	Sulfamethoxazole	AY034138	sul1	100	840/840	ABNZCF010000056.1 Salmonella enterica strain 23MN03CL01-S1 SAMN35801630-rid18525643.guided.42, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABNZCF010000032.1 Salmonella enterica strain 23MN03CL01-S1 SAMN35801630-rid18525643.denovo.33, whole genome shotgun sequence	16248..17447	Doxycycline, Tetracycline	AJ517790	tet(C)	100	1107/1176	ABNZCF010000046.1 Salmonella enterica strain 23MN03CL01-S1 SAMN35801630-rid18525643.denovo.54, whole genome shotgun sequence	1..1107	Doxycycline, Tetracycline	AY046276	tet(A)	100	1200/1200	ABNZCF010000055.1 Salmonella enterica strain 23MN03CL01-S1 SAMN35801630-rid18525643.guided.41, whole genome shotgun sequence	6147..7346	Doxycycline, Tetracycline	AJ517790	tet(C)	100	1108/1176	ABNZCF010000059.1 Salmonella enterica strain 23MN03CL01-S1 SAMN35801630-rid18525643.guided.53, whole genome shotgun sequence	836..1943	Doxycycline, Tetracycline	AY046276																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNZCF010000040.1 Salmonella enterica strain 23MN03CL01-S1 SAMN35801630-rid18525643.denovo.46, whole genome shotgun sequence	371..501	enterobacteriales	ColpVC	98.96	193 / 193	ABNZCF010000045.1 Salmonella enterica strain 23MN03CL01-S1 SAMN35801630-rid18525643.denovo.52, whole genome shotgun sequence	805..997																																																avrA	ABNZCF010000009.1	95312..96181	99.885	870	0						
GCA_032784085.1_PDT001785825.1_genomic.fna	Salmonella_enterica	0.5212	341.476 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZCH010000002.1 Salmonella enterica strain PNUSAS357016 SAMN35801760-rid18522473.denovo.02, whole genome shotgun sequence	145210..145647	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZCH010000045.1 Salmonella enterica strain PNUSAS357016 SAMN35801760-rid18522473.guided.12, whole genome shotgun sequence	16611..17048	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZCH010000014.1 Salmonella enterica strain PNUSAS357016 SAMN35801760-rid18522473.denovo.15, whole genome shotgun sequence	36049..36691	enterobacteriales	IncFII(S)	100	262 / 262	ABNZCH010000014.1 Salmonella enterica strain PNUSAS357016 SAMN35801760-rid18522473.denovo.15, whole genome shotgun sequence	51776..52037																																																avrA	ABNZCH010000001.1	450786..451655	99.885	870	0						
GCA_032784105.1_PDT001785822.1_genomic.fna	Salmonella_enterica	0.5209	391.162 KB	5	aroC_13,dnaN_127,hemD_506,hisD_113,purE_114,sucA_107,thrA_4	3095	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_506	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZCK010000001.1 Salmonella enterica strain PNUSAS357033 SAMN35801779-rid18522463.denovo.01, whole genome shotgun sequence	498130..498567	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZCK010000023.1 Salmonella enterica strain PNUSAS357033 SAMN35801779-rid18522463.guided.12, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZCK010000003.1	140447..141316	99.425	870	0						
GCA_032784125.1_PDT001785826.1_genomic.fna	Salmonella_enterica	0.522	341.181 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZCG010000002.1 Salmonella enterica strain PNUSAS357012 SAMN35801769-rid18528873.denovo.02, whole genome shotgun sequence	145374..145811	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZCG010000047.1 Salmonella enterica strain PNUSAS357012 SAMN35801769-rid18528873.guided.30, whole genome shotgun sequence	12607..13044	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZCG010000018.1 Salmonella enterica strain PNUSAS357012 SAMN35801769-rid18528873.denovo.18, whole genome shotgun sequence	36050..36692	enterobacteriales	IncFII(S)	100	262 / 262	ABNZCG010000018.1 Salmonella enterica strain PNUSAS357012 SAMN35801769-rid18528873.denovo.18, whole genome shotgun sequence	51777..52038																																																avrA	ABNZCG010000001.1	450786..451655	99.885	870	0						
GCA_032784145.1_PDT001785823.1_genomic.fna	Salmonella_enterica	0.5211	564.508 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncR,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZCJ010000001.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.denovo.01, whole genome shotgun sequence	149984..150421	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNZCJ010000025.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.denovo.30, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNZCJ010000035.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.guided.14, whole genome shotgun sequence	34929..35366	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNZCJ010000038.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.guided.29, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNZCJ010000025.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.denovo.30, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNZCJ010000038.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.guided.29, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNZCJ010000022.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.denovo.26, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNZCJ010000037.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.guided.25, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNZCJ010000021.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.denovo.24, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNZCJ010000039.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.guided.32, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNZCJ010000025.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.denovo.30, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNZCJ010000038.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.guided.29, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNZCJ010000028.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.denovo.36, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNZCJ010000041.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.guided.35, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNZCJ010000021.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.denovo.24, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNZCJ010000040.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.guided.33, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNZCJ010000021.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.denovo.24, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNZCJ010000040.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.guided.33, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNZCJ010000018.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.denovo.21, whole genome shotgun sequence	4434..4684	enterobacteriales	IncX1	94.92	374 / 374	ABNZCJ010000013.1 Salmonella enterica strain PNUSAS357014 SAMN35801777-rid18518093.denovo.15, whole genome shotgun sequence	13796..14169																																																avrA	ABNZCJ010000002.1	585449..586318	99.77	870	0						
GCA_032784165.1_PDT001785824.1_genomic.fna	Salmonella_enterica	0.5202	166.474 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaDHA-1,blaTEM-1B,blaDHA-1,blaDHA-1,blaTEM-1B,mph(A),erm(B),mph(A),erm(B),qnrB4,qnrB4,sul1,sul2,sul2,sul2,sul1,dfrA17,dfrA17	0		3	Col(BS512),IncFII,IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZCI010000001.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.denovo.01, whole genome shotgun sequence	381670..382107	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZCI010000043.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.denovo.51, whole genome shotgun sequence	6..842	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZCI010000043.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.denovo.51, whole genome shotgun sequence	842..1645	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNZCI010000060.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.guided.31, whole genome shotgun sequence	18165..18602	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	837/837	ABNZCI010000065.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.guided.48, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZCI010000065.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.guided.48, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABNZCI010000066.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.guided.49, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZCI010000066.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.guided.49, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	blaDHA-1	100	1140/1140	ABNZCI010000035.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.denovo.38, whole genome shotgun sequence	5118..6257	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	Y16410	blaTEM-1B	100	861/861	ABNZCI010000049.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.denovo.60, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaDHA-1	100	1140/1140	ABNZCI010000062.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.guided.43, whole genome shotgun sequence	2896..4035	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	Y16410	blaDHA-1	100	1140/1140	ABNZCI010000063.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.guided.44, whole genome shotgun sequence	2896..4035	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	Y16410	blaTEM-1B	100	861/861	ABNZCI010000069.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.guided.59, whole genome shotgun sequence	559..1419	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	99.89	903/906	ABNZCI010000035.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.denovo.38, whole genome shotgun sequence	13996..14898	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	erm(B)	99.86	738/738	ABNZCI010000051.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.denovo.62, whole genome shotgun sequence	291..1028	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	JN899585	mph(A)	99.89	903/906	ABNZCI010000064.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.guided.47, whole genome shotgun sequence	108..1010	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	erm(B)	99.86	738/738	ABNZCI010000071.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.guided.64, whole genome shotgun sequence	332..1069	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	JN899585	qnrB4	100	645/645	ABNZCI010000035.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.denovo.38, whole genome shotgun sequence	350..994	Ciprofloxacin	DQ303921	qnrB4	100	645/645	ABNZCI010000068.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.guided.55, whole genome shotgun sequence	1265..1909	Ciprofloxacin	DQ303921	sul1	100	840/840	ABNZCI010000035.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.denovo.38, whole genome shotgun sequence	7834..8673	Sulfamethoxazole	U12338	sul2	100	816/816	ABNZCI010000043.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.denovo.51, whole genome shotgun sequence	1706..2521	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNZCI010000065.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.guided.48, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNZCI010000066.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.guided.49, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABNZCI010000067.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.guided.54, whole genome shotgun sequence	5..844	Sulfamethoxazole	U12338	dfrA17	100	474/474	ABNZCI010000052.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.denovo.65, whole genome shotgun sequence	461..934	Trimethoprim	FJ460238	dfrA17	100	474/474	ABNZCI010000070.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.guided.63, whole genome shotgun sequence	877..1350	Trimethoprim	FJ460238																																																																																																																																																																																																																																																																																																						enterobacteriales	Col(BS512)	100	233 / 233	ABNZCI010000047.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.denovo.57, whole genome shotgun sequence	400..632	enterobacteriales	IncFII	100	261 / 261	ABNZCI010000026.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.denovo.26, whole genome shotgun sequence	3324..3584		enterobacteriales	IncX1	98.66	374 / 374	ABNZCI010000031.1 Salmonella enterica strain PNUSAS357003 SAMN35801624-rid18524043.denovo.33, whole genome shotgun sequence	6956..7329																																									avrA	ABNZCI010000002.1	540382..541251	99.885	870	0						
GCA_032784185.1_PDT001785821.1_genomic.fna	Salmonella_enterica	0.5228	445.273 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZCM010000001.1 Salmonella enterica strain PNUSAS357013 SAMN35801768-rid18530353.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZCM010000025.1 Salmonella enterica strain PNUSAS357013 SAMN35801768-rid18530353.guided.18, whole genome shotgun sequence	14350..14787	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZCM010000002.1	150300..151169	99.655	870	0						
GCA_032784205.1_PDT001785820.1_genomic.fna	Salmonella_enterica	0.5226	346.75 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNZCL010000011.1 Salmonella enterica strain PNUSAS357015 SAMN35801761-rid18521043.denovo.11, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNZCL010000027.1 Salmonella enterica strain PNUSAS357015 SAMN35801761-rid18521043.guided.22, whole genome shotgun sequence	4403..4840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZCL010000002.1	131916..132785	98.966	870	0						
GCA_032784225.1_PDT001785819.1_genomic.fna	Salmonella_enterica	0.5196	437.207 KB	5	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZCN010000001.1 Salmonella enterica strain PNUSAS357024 SAMN35801771-rid18524033.denovo.01, whole genome shotgun sequence	671186..671623	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZCN010000074.1 Salmonella enterica strain PNUSAS357024 SAMN35801771-rid18524033.guided.40, whole genome shotgun sequence	864..1301	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNZCN010000025.1 Salmonella enterica strain PNUSAS357024 SAMN35801771-rid18524033.denovo.25, whole genome shotgun sequence	11729..12371																																																						avrA	ABNZCN010000004.1	150701..151570	99.77	870	0						
GCA_032784235.1_PDT001785818.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZCO010000001.1 Salmonella enterica strain PNUSAS357023 SAMN35801763-rid18517063.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZCO010000019.1 Salmonella enterica strain PNUSAS357023 SAMN35801763-rid18517063.guided.15, whole genome shotgun sequence	11601..12038	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZCO010000012.1 Salmonella enterica strain PNUSAS357023 SAMN35801763-rid18517063.denovo.13, whole genome shotgun sequence	50251..50893	enterobacteriales	IncFII(S)	100	262 / 262	ABNZCO010000012.1 Salmonella enterica strain PNUSAS357023 SAMN35801763-rid18517063.denovo.13, whole genome shotgun sequence	5998..6259																																																avrA	ABNZCO010000002.1	553426..554295	99.54	870	0						
GCA_032784265.1_PDT001785817.1_genomic.fna	Salmonella_enterica	0.5215	405.99 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZCP010000001.1 Salmonella enterica strain PNUSAS357028 SAMN35801755-rid18525633.denovo.01, whole genome shotgun sequence	293279..293716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZCP010000033.1 Salmonella enterica strain PNUSAS357028 SAMN35801755-rid18525633.guided.19, whole genome shotgun sequence	6148..6585	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZCP010000016.1 Salmonella enterica strain PNUSAS357028 SAMN35801755-rid18525633.denovo.16, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNZCP010000020.1 Salmonella enterica strain PNUSAS357028 SAMN35801755-rid18525633.denovo.21, whole genome shotgun sequence	3402..3663																																																avrA	ABNZCP010000002.1	553453..554322	99.54	870	0						
GCA_032784275.1_PDT001785815.1_genomic.fna	Salmonella_enterica	0.5209	430.196 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZCS010000001.1 Salmonella enterica strain PNUSAS356994 SAMN35801618-rid18522453.denovo.01, whole genome shotgun sequence	643804..644241	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZCS010000019.1 Salmonella enterica strain PNUSAS356994 SAMN35801618-rid18522453.guided.14, whole genome shotgun sequence	1317..1754	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032784305.1_PDT001785816.1_genomic.fna	Salmonella_enterica	0.5226	379.727 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZCQ010000001.1 Salmonella enterica strain PNUSAS356932 SAMN35801513-rid18527263.denovo.01, whole genome shotgun sequence	790293..790730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZCQ010000030.1 Salmonella enterica strain PNUSAS356932 SAMN35801513-rid18527263.guided.23, whole genome shotgun sequence	1689..2126	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZCQ010000005.1	129887..130756	98.966	870	0						
GCA_032784325.1_PDT001785813.1_genomic.fna	Salmonella_enterica	0.5217	209.736 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZCU010000001.1 Salmonella enterica strain PNUSAS357004 SAMN35801623-rid18518083.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNZCU010000029.1 Salmonella enterica strain PNUSAS357004 SAMN35801623-rid18518083.denovo.30, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZCU010000029.1 Salmonella enterica strain PNUSAS357004 SAMN35801623-rid18518083.denovo.30, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNZCU010000054.1 Salmonella enterica strain PNUSAS357004 SAMN35801623-rid18518083.guided.27, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNZCU010000057.1 Salmonella enterica strain PNUSAS357004 SAMN35801623-rid18518083.guided.40, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZCU010000057.1 Salmonella enterica strain PNUSAS357004 SAMN35801623-rid18518083.guided.40, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABNZCU010000034.1 Salmonella enterica strain PNUSAS357004 SAMN35801623-rid18518083.denovo.36, whole genome shotgun sequence	18373..19248	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNZCU010000060.1 Salmonella enterica strain PNUSAS357004 SAMN35801623-rid18518083.guided.48, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABNZCU010000029.1 Salmonella enterica strain PNUSAS357004 SAMN35801623-rid18518083.denovo.30, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNZCU010000057.1 Salmonella enterica strain PNUSAS357004 SAMN35801623-rid18518083.guided.40, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNZCU010000029.1 Salmonella enterica strain PNUSAS357004 SAMN35801623-rid18518083.denovo.30, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABNZCU010000058.1 Salmonella enterica strain PNUSAS357004 SAMN35801623-rid18518083.guided.42, whole genome shotgun sequence	3255..4454	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZCU010000059.1 Salmonella enterica strain PNUSAS357004 SAMN35801623-rid18518083.guided.43, whole genome shotgun sequence	3255..4454	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																													gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNZCU010000034.1 Salmonella enterica strain PNUSAS357004 SAMN35801623-rid18518083.denovo.36, whole genome shotgun sequence	9109..9668																																																						avrA	ABNZCU010000006.1	95066..95935	99.655	870	0						
GCA_032784345.1_PDT001785814.1_genomic.fna	Salmonella_enterica	0.5227	560.938 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNZCT010000001.1 Salmonella enterica strain PNUSAS357042 SAMN35801757-rid18528863.denovo.01, whole genome shotgun sequence	1045234..1045671	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNZCT010000020.1 Salmonella enterica strain PNUSAS357042 SAMN35801757-rid18528863.guided.14, whole genome shotgun sequence	37227..37664	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZCT010000003.1	419896..420765	99.54	870	0						
GCA_032784385.1_PDT001785810.1_genomic.fna	Salmonella_enterica	0.5199	302.796 KB	6	aroC_3,dnaN_3!,dnaN_3!,hemD_7,hisD_4,purE_3,sucA_786,thrA_7	Unknown	4:f,g,s:-	5	aac(6')-Iaa,aadA7,aac(6')-Iaa,aadA7,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3!	dnaN	100	100	dnaN_3!	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_786	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZCR010000001.1 Salmonella enterica strain PNUSAS356995 SAMN35801621-rid18521033.denovo.01, whole genome shotgun sequence	483564..484001	Amikacin, Tobramycin	NC_003197	aadA7	99	798/798	ABNZCR010000013.1 Salmonella enterica strain PNUSAS356995 SAMN35801621-rid18521033.denovo.13, whole genome shotgun sequence	54137..54934	Spectinomycin, Streptomycin	AF224733	aac(6')-Iaa	97.95	438/438	ABNZCR010000041.1 Salmonella enterica strain PNUSAS356995 SAMN35801621-rid18521033.guided.24, whole genome shotgun sequence	44275..44712	Amikacin, Tobramycin	NC_003197	aadA7	99	798/798	ABNZCR010000042.1 Salmonella enterica strain PNUSAS356995 SAMN35801621-rid18521033.guided.26, whole genome shotgun sequence	33517..34314	Spectinomycin, Streptomycin	AF224733	fosA7	97.16	423/423	ABNZCR010000004.1 Salmonella enterica strain PNUSAS356995 SAMN35801621-rid18521033.denovo.04, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNZCR010000045.1 Salmonella enterica strain PNUSAS356995 SAMN35801621-rid18521033.guided.34, whole genome shotgun sequence	6693..7115	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABNZCR010000013.1 Salmonella enterica strain PNUSAS356995 SAMN35801621-rid18521033.denovo.13, whole genome shotgun sequence	55439..56278	Sulfamethoxazole	U12338	sul1	100	840/840	ABNZCR010000042.1 Salmonella enterica strain PNUSAS356995 SAMN35801621-rid18521033.guided.26, whole genome shotgun sequence	34819..35658	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNZCR010000013.1 Salmonella enterica strain PNUSAS356995 SAMN35801621-rid18521033.denovo.13, whole genome shotgun sequence	65574..66773	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZCR010000046.1 Salmonella enterica strain PNUSAS356995 SAMN35801621-rid18521033.guided.35, whole genome shotgun sequence	3931..5130	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZCR010000002.1	67021..67890	99.195	870	0						
GCA_032784425.1_PDT001785809.1_genomic.fna	Salmonella_enterica	0.5224	672.286 KB	3	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNZCX010000001.1 Salmonella enterica strain PNUSAS357040 SAMN35801752-rid18530333.denovo.01, whole genome shotgun sequence	269957..270394	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNZCX010000020.1 Salmonella enterica strain PNUSAS357040 SAMN35801752-rid18530333.guided.17, whole genome shotgun sequence	388..825	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032784445.1_PDT001785808.1_genomic.fna	Salmonella_enterica	0.5213	204.394 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,floR,sul1,tet(G),tet(G),tet(G)	0		3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZDB010000003.1 Salmonella enterica strain PNUSAS356945 SAMN35801522-rid18518073.denovo.03, whole genome shotgun sequence	162209..162646	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNZDB010000023.1 Salmonella enterica strain PNUSAS356945 SAMN35801522-rid18518073.denovo.23, whole genome shotgun sequence	60449..61228	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABNZDB010000047.1 Salmonella enterica strain PNUSAS356945 SAMN35801522-rid18518073.guided.39, whole genome shotgun sequence	5141..5578	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNZDB010000052.1 Salmonella enterica strain PNUSAS356945 SAMN35801522-rid18518073.guided.51, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNZDB010000036.1 Salmonella enterica strain PNUSAS356945 SAMN35801522-rid18518073.denovo.38, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNZDB010000051.1 Salmonella enterica strain PNUSAS356945 SAMN35801522-rid18518073.guided.49, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABNZDB010000036.1 Salmonella enterica strain PNUSAS356945 SAMN35801522-rid18518073.denovo.38, whole genome shotgun sequence	6603..7817	Chloramphenicol, Florfenicol	AF118107	floR	99.92	1215/1215	ABNZDB010000048.1 Salmonella enterica strain PNUSAS356945 SAMN35801522-rid18518073.guided.41, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABNZDB010000049.1 Salmonella enterica strain PNUSAS356945 SAMN35801522-rid18518073.guided.42, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNZDB010000050.1 Salmonella enterica strain PNUSAS356945 SAMN35801522-rid18518073.guided.47, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABNZDB010000036.1 Salmonella enterica strain PNUSAS356945 SAMN35801522-rid18518073.denovo.38, whole genome shotgun sequence	4491..5666	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNZDB010000048.1 Salmonella enterica strain PNUSAS356945 SAMN35801522-rid18518073.guided.41, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABNZDB010000049.1 Salmonella enterica strain PNUSAS356945 SAMN35801522-rid18518073.guided.42, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																	enterobacteriales	Col440I	92.04	113 / 114	ABNZDB010000041.1 Salmonella enterica strain PNUSAS356945 SAMN35801522-rid18518073.denovo.46, whole genome shotgun sequence	1334..1446	enterobacteriales	IncFIB(S)	100	643 / 643	ABNZDB010000017.1 Salmonella enterica strain PNUSAS356945 SAMN35801522-rid18518073.denovo.17, whole genome shotgun sequence	36050..36692		enterobacteriales	IncFII(S)	100	262 / 262	ABNZDB010000017.1 Salmonella enterica strain PNUSAS356945 SAMN35801522-rid18518073.denovo.17, whole genome shotgun sequence	51777..52038																																									avrA	ABNZDB010000001.1	431205..432074	99.885	870	0						
GCA_032784465.1_PDT001785807.1_genomic.fna	Salmonella_enterica	0.5227	730.316 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNZCZ010000001.1 Salmonella enterica strain PNUSAS357039 SAMN35801754-rid18525623.denovo.01, whole genome shotgun sequence	1045231..1045668	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNZCZ010000019.1 Salmonella enterica strain PNUSAS357039 SAMN35801754-rid18525623.guided.16, whole genome shotgun sequence	4001..4438	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZCZ010000002.1	659285..660154	99.54	870	0						
GCA_032784485.1_PDT001785806.1_genomic.fna	Salmonella_enterica	0.5205	393.189 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZCY010000001.1 Salmonella enterica strain PNUSAS357001 SAMN35801620-rid18528853.denovo.01, whole genome shotgun sequence	645094..645531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZCY010000022.1 Salmonella enterica strain PNUSAS357001 SAMN35801620-rid18528853.guided.17, whole genome shotgun sequence	16219..16656	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZCY010000013.1 Salmonella enterica strain PNUSAS357001 SAMN35801620-rid18528853.denovo.13, whole genome shotgun sequence	34958..35491																																																						avrA	ABNZCY010000006.1	155363..156233	99.656	871	0						
GCA_032784505.1_PDT001785805.1_genomic.fna	Salmonella_enterica	0.5222	263.453 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZDA010000001.1 Salmonella enterica strain PNUSAS356992 SAMN35801617-rid18527253.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZDA010000037.1 Salmonella enterica strain PNUSAS356992 SAMN35801617-rid18527253.guided.22, whole genome shotgun sequence	31736..32173	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZDA010000004.1	149828..150697	99.655	870	0						
GCA_032784525.1_PDT001785804.1_genomic.fna	Salmonella_enterica	0.5205	155.022 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNZDE010000009.1 Salmonella enterica strain PNUSAS356942 SAMN35801519-rid18528843.denovo.09, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABNZDE010000062.1 Salmonella enterica strain PNUSAS356942 SAMN35801519-rid18528843.guided.44, whole genome shotgun sequence	8866..9300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032784545.1_PDT001785803.1_genomic.fna	Salmonella_enterica	0.5213	219.649 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZDC010000001.1 Salmonella enterica strain 23MN02CB03-S1 SAMN35801627-rid18519643.denovo.01, whole genome shotgun sequence	219215..219652	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZDC010000050.1 Salmonella enterica strain 23MN02CB03-S1 SAMN35801627-rid18519643.guided.30, whole genome shotgun sequence	41783..42220	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABNZDC010000030.1 Salmonella enterica strain 23MN02CB03-S1 SAMN35801627-rid18519643.denovo.31, whole genome shotgun sequence	21682..22497	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZDC010000051.1 Salmonella enterica strain 23MN02CB03-S1 SAMN35801627-rid18519643.guided.38, whole genome shotgun sequence	1593..2408	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNZDC010000030.1 Salmonella enterica strain 23MN02CB03-S1 SAMN35801627-rid18519643.denovo.31, whole genome shotgun sequence	24674..25873	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZDC010000051.1 Salmonella enterica strain 23MN02CB03-S1 SAMN35801627-rid18519643.guided.38, whole genome shotgun sequence	4585..5784	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNZDC010000040.1 Salmonella enterica strain 23MN02CB03-S1 SAMN35801627-rid18519643.denovo.43, whole genome shotgun sequence	371..501																																																						avrA	ABNZDC010000002.1	148340..149209	99.885	870	0						
GCA_032784565.1_PDT001785802.1_genomic.fna	Salmonella_enterica	0.5196	196.644 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZDD010000013.1 Salmonella enterica strain 23MN04CB02-S1 SAMN35801629-rid18524013.denovo.13, whole genome shotgun sequence	86588..87025	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZDD010000063.1 Salmonella enterica strain 23MN04CB02-S1 SAMN35801629-rid18524013.guided.29, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	ABNZDD010000048.1 Salmonella enterica strain 23MN04CB02-S1 SAMN35801629-rid18524013.denovo.51, whole genome shotgun sequence	1831..2512	enterobacteriales	IncFII	96.56	262 / 261	ABNZDD010000028.1 Salmonella enterica strain 23MN04CB02-S1 SAMN35801629-rid18524013.denovo.31, whole genome shotgun sequence	36467..36728		enterobacteriales	IncX1	100	373 / 373	ABNZDD010000038.1 Salmonella enterica strain 23MN04CB02-S1 SAMN35801629-rid18524013.denovo.41, whole genome shotgun sequence	2153..2525																																									avrA	ABNZDD010000015.1	102634..103503	99.655	870	0						
GCA_032784625.1_PDT001785797.1_genomic.fna	Salmonella_enterica	0.5224	271.471 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZDK010000003.1 Salmonella enterica strain PNUSAS356941 SAMN35801517-rid18525613.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZDK010000051.1 Salmonella enterica strain PNUSAS356941 SAMN35801517-rid18525613.guided.33, whole genome shotgun sequence	14998..15435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZDK010000014.1 Salmonella enterica strain PNUSAS356941 SAMN35801517-rid18525613.denovo.14, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNZDK010000014.1 Salmonella enterica strain PNUSAS356941 SAMN35801517-rid18525613.denovo.14, whole genome shotgun sequence	30407..30668																																																avrA	ABNZDK010000001.1	401290..402158	100	869	0						
GCA_032784685.1_PDT001785796.1_genomic.fna	Salmonella_enterica	0.5215	558.057 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNZDI010000001.1 Salmonella enterica strain PNUSAS356997 SAMN35801619-rid18528833.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNZDI010000025.1 Salmonella enterica strain PNUSAS356997 SAMN35801619-rid18528833.guided.16, whole genome shotgun sequence	16407..16844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZDI010000002.1	138354..139223	98.966	870	0						
GCA_032784705.1_PDT001785793.1_genomic.fna	Salmonella_enterica	0.522	302.519 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_110,sucA_9,thrA_2	302	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_110	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZDN010000003.1 Salmonella enterica strain PNUSAS356937 SAMN35801511-rid18519633.denovo.03, whole genome shotgun sequence	221149..221586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZDN010000041.1 Salmonella enterica strain PNUSAS356937 SAMN35801511-rid18519633.guided.33, whole genome shotgun sequence	1649..2086	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZDN010000015.1 Salmonella enterica strain PNUSAS356937 SAMN35801511-rid18519633.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNZDN010000015.1 Salmonella enterica strain PNUSAS356937 SAMN35801511-rid18519633.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNZDN010000001.1	401661..402530	99.885	870	0						
GCA_032784725.1_PDT001785794.1_genomic.fna	Salmonella_enterica	0.5201	524.928 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),Col440I,ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZDM010000001.1 Salmonella enterica strain PNUSAS357002 SAMN35801622-rid18528823.denovo.01, whole genome shotgun sequence	462120..462557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZDM010000039.1 Salmonella enterica strain PNUSAS357002 SAMN35801622-rid18528823.guided.19, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABNZDM010000022.1 Salmonella enterica strain PNUSAS357002 SAMN35801622-rid18528823.denovo.24, whole genome shotgun sequence	1367..1497	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNZDM010000025.1 Salmonella enterica strain PNUSAS357002 SAMN35801622-rid18528823.denovo.27, whole genome shotgun sequence	1708..1838		enterobacteriales	Col440I	90.27	113 / 114	ABNZDM010000024.1 Salmonella enterica strain PNUSAS357002 SAMN35801622-rid18528823.denovo.26, whole genome shotgun sequence	3345..3457		enterobacteriales	ColpVC	98.96	193 / 193	ABNZDM010000026.1 Salmonella enterica strain PNUSAS357002 SAMN35801622-rid18528823.denovo.28, whole genome shotgun sequence	805..997		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNZDM010000012.1 Salmonella enterica strain PNUSAS357002 SAMN35801622-rid18528823.denovo.12, whole genome shotgun sequence	70232..70373																											avrA	ABNZDM010000004.1	145429..146298	98.966	870	0						
GCA_032784745.1_PDT001785795.1_genomic.fna	Salmonella_enterica	0.5221	207.446 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZDL010000001.1 Salmonella enterica strain PNUSAS356944 SAMN35801520-rid18527243.denovo.01, whole genome shotgun sequence	380041..380478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZDL010000044.1 Salmonella enterica strain PNUSAS356944 SAMN35801520-rid18527243.guided.36, whole genome shotgun sequence	5530..5967	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZDL010000005.1	94133..95001	99.77	870	0						
GCA_032784765.1_PDT001785791.1_genomic.fna	Salmonella_enterica	0.5214	271.79 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZDR010000002.1 Salmonella enterica strain PNUSAS356951 SAMN35801525-rid18530303.denovo.02, whole genome shotgun sequence	145234..145671	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZDR010000044.1 Salmonella enterica strain PNUSAS356951 SAMN35801525-rid18530303.denovo.49, whole genome shotgun sequence	5..841	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZDR010000044.1 Salmonella enterica strain PNUSAS356951 SAMN35801525-rid18530303.denovo.49, whole genome shotgun sequence	841..1644	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNZDR010000060.1 Salmonella enterica strain PNUSAS356951 SAMN35801525-rid18530303.guided.40, whole genome shotgun sequence	4350..4787	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZDR010000062.1 Salmonella enterica strain PNUSAS356951 SAMN35801525-rid18530303.guided.48, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZDR010000062.1 Salmonella enterica strain PNUSAS356951 SAMN35801525-rid18530303.guided.48, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNZDR010000051.1 Salmonella enterica strain PNUSAS356951 SAMN35801525-rid18530303.denovo.57, whole genome shotgun sequence	533..1393	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZDR010000063.1 Salmonella enterica strain PNUSAS356951 SAMN35801525-rid18530303.guided.56, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNZDR010000044.1 Salmonella enterica strain PNUSAS356951 SAMN35801525-rid18530303.denovo.49, whole genome shotgun sequence	1705..2520	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNZDR010000062.1 Salmonella enterica strain PNUSAS356951 SAMN35801525-rid18530303.guided.48, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNZDR010000034.1 Salmonella enterica strain PNUSAS356951 SAMN35801525-rid18530303.denovo.35, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZDR010000061.1 Salmonella enterica strain PNUSAS356951 SAMN35801525-rid18530303.guided.42, whole genome shotgun sequence	1663..2868	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	ColRNAI	90.08	131 / 130	ABNZDR010000043.1 Salmonella enterica strain PNUSAS356951 SAMN35801525-rid18530303.denovo.47, whole genome shotgun sequence	3981..4111																																																						avrA	ABNZDR010000001.1	434746..435615	99.885	870	0						
GCA_032784805.1_PDT001785792.1_genomic.fna	Salmonella_enterica	0.52	492.99 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNZDO010000001.1 Salmonella enterica strain PNUSAS356940 SAMN35801516-rid18524003.denovo.01, whole genome shotgun sequence	779774..780211	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNZDO010000028.1 Salmonella enterica strain PNUSAS356940 SAMN35801516-rid18524003.guided.19, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNZDO010000020.1 Salmonella enterica strain PNUSAS356940 SAMN35801516-rid18524003.denovo.23, whole genome shotgun sequence	239..369																																																						avrA	ABNZDO010000005.1	409483..410352	99.425	870	0						
GCA_032784825.1_PDT001785790.1_genomic.fna	Salmonella_enterica	0.5214	203.759 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZDP010000001.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.denovo.01, whole genome shotgun sequence	572098..572535	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNZDP010000025.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.denovo.26, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZDP010000025.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.denovo.26, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNZDP010000036.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.denovo.41, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNZDP010000036.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.denovo.41, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNZDP010000050.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.guided.33, whole genome shotgun sequence	20586..21023	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNZDP010000052.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.guided.40, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNZDP010000052.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.guided.40, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNZDP010000053.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.guided.42, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZDP010000053.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.guided.42, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	floR	98.19	1214/1215	ABNZDP010000033.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.denovo.37, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNZDP010000054.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.guided.45, whole genome shotgun sequence	336..1549	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNZDP010000025.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.denovo.26, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABNZDP010000053.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.guided.42, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNZDP010000025.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.denovo.26, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZDP010000051.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.guided.36, whole genome shotgun sequence	6538..7737	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNZDP010000029.1 Salmonella enterica strain 23MN02CB02-S1 SAMN35801625-rid18521013.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABNZDP010000004.1	149828..150697	99.655	870	0						
GCA_032784835.1_PDT001785788.1_genomic.fna	Salmonella_enterica	0.5214	490.113 KB	3	aroC_5,dnaN_2,hemD_360,hisD_7,purE_6,sucA_6,thrA_11	1973	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_360	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZDQ010000001.1 Salmonella enterica strain 23MN01CL01-S1 SAMN35801626-rid18518063.denovo.01, whole genome shotgun sequence	780607..781044	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZDQ010000026.1 Salmonella enterica strain 23MN01CL01-S1 SAMN35801626-rid18518063.guided.17, whole genome shotgun sequence	15067..15504	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZDQ010000017.1 Salmonella enterica strain 23MN01CL01-S1 SAMN35801626-rid18518063.denovo.20, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABNZDQ010000019.1 Salmonella enterica strain 23MN01CL01-S1 SAMN35801626-rid18518063.denovo.22, whole genome shotgun sequence	3407..3668																																																avrA	ABNZDQ010000002.1	553547..554416	99.54	870	0						
GCA_032784865.1_PDT001785787.1_genomic.fna	Salmonella_enterica	0.5209	203.991 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZDS010000001.1 Salmonella enterica strain 23MN03CG01-S1 SAMN35801628-rid18525603.denovo.01, whole genome shotgun sequence	358433..358870	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZDS010000060.1 Salmonella enterica strain 23MN03CG01-S1 SAMN35801628-rid18525603.guided.32, whole genome shotgun sequence	21521..21958	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNZDS010000026.1 Salmonella enterica strain 23MN03CG01-S1 SAMN35801628-rid18525603.denovo.26, whole genome shotgun sequence	14638..15783	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNZDS010000061.1 Salmonella enterica strain 23MN03CG01-S1 SAMN35801628-rid18525603.guided.38, whole genome shotgun sequence	10809..11954	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNZDS010000041.1 Salmonella enterica strain 23MN03CG01-S1 SAMN35801628-rid18525603.denovo.45, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZDS010000064.1 Salmonella enterica strain 23MN03CG01-S1 SAMN35801628-rid18525603.guided.47, whole genome shotgun sequence	3114..3929	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNZDS010000041.1 Salmonella enterica strain 23MN03CG01-S1 SAMN35801628-rid18525603.denovo.45, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZDS010000064.1 Salmonella enterica strain 23MN03CG01-S1 SAMN35801628-rid18525603.guided.47, whole genome shotgun sequence	6106..7305	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNZDS010000046.1 Salmonella enterica strain 23MN03CG01-S1 SAMN35801628-rid18525603.denovo.51, whole genome shotgun sequence	1326..1445	enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNZDS010000049.1 Salmonella enterica strain 23MN03CG01-S1 SAMN35801628-rid18525603.denovo.54, whole genome shotgun sequence	371..501		enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNZDS010000050.1 Salmonella enterica strain 23MN03CG01-S1 SAMN35801628-rid18525603.denovo.55, whole genome shotgun sequence	3134..3264		enterobacteriales	IncC	100	417 / 417	ABNZDS010000030.1 Salmonella enterica strain 23MN03CG01-S1 SAMN35801628-rid18525603.denovo.30, whole genome shotgun sequence	38349..38765																																		avrA	ABNZDS010000004.1	102350..103219	99.885	870	0						
GCA_032784885.1_PDT001785786.1_genomic.fna	Salmonella_enterica	0.5222	192.055 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZDU010000006.1 Salmonella enterica strain PNUSAS356946 SAMN35801521-rid18528813.denovo.06, whole genome shotgun sequence	145427..145864	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZDU010000046.1 Salmonella enterica strain PNUSAS356946 SAMN35801521-rid18528813.guided.32, whole genome shotgun sequence	10394..10831	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZDU010000002.1	208258..209126	99.77	870	0						
GCA_032784905.1_PDT001785784.1_genomic.fna	Salmonella_enterica	0.522	468.417 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col156,IncI1-I(Alpha)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNZDW010000001.1 Salmonella enterica strain PNUSAS356904 SAMN35801485-rid18528803.denovo.01, whole genome shotgun sequence	402966..403403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNZDW010000035.1 Salmonella enterica strain PNUSAS356904 SAMN35801485-rid18528803.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	ABNZDW010000022.1 Salmonella enterica strain PNUSAS356904 SAMN35801485-rid18528803.denovo.25, whole genome shotgun sequence	967..1118	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNZDW010000014.1 Salmonella enterica strain PNUSAS356904 SAMN35801485-rid18528803.denovo.14, whole genome shotgun sequence	68988..69129																																																											
GCA_032784925.1_PDT001785785.1_genomic.fna	Salmonella_enterica	0.523	323.711 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZDV010000001.1 Salmonella enterica strain PNUSAS356939 SAMN35801514-rid18527233.denovo.01, whole genome shotgun sequence	153809..154246	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZDV010000049.1 Salmonella enterica strain PNUSAS356939 SAMN35801514-rid18527233.guided.29, whole genome shotgun sequence	2438..2875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032784965.1_PDT001785782.1_genomic.fna	Salmonella_enterica	0.5221	335.859 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZEA010000003.1 Salmonella enterica strain PNUSAS356950 SAMN35801523-rid18523993.denovo.03, whole genome shotgun sequence	173860..174297	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZEA010000038.1 Salmonella enterica strain PNUSAS356950 SAMN35801523-rid18523993.guided.24, whole genome shotgun sequence	12347..12784	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNZEA010000026.1 Salmonella enterica strain PNUSAS356950 SAMN35801523-rid18523993.denovo.29, whole genome shotgun sequence	1506..1636	enterobacteriales	IncI1-I(Alpha)	98.59	142 / 142	ABNZEA010000016.1 Salmonella enterica strain PNUSAS356950 SAMN35801523-rid18523993.denovo.16, whole genome shotgun sequence	78064..78205																																																avrA	ABNZEA010000002.1	95178..96047	98.966	870	0						
GCA_032784985.1_PDT001785780.1_genomic.fna	Salmonella_enterica	0.5214	197.039 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZEC010000001.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNZEC010000028.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.denovo.29, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZEC010000028.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.denovo.29, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNZEC010000038.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.denovo.42, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNZEC010000038.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.denovo.42, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNZEC010000055.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.guided.31, whole genome shotgun sequence	5614..6051	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNZEC010000056.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.guided.34, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZEC010000056.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.guided.34, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNZEC010000058.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.guided.43, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNZEC010000058.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.guided.43, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNZEC010000040.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.denovo.46, whole genome shotgun sequence	939..1814	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNZEC010000059.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.guided.44, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNZEC010000037.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.denovo.41, whole genome shotgun sequence	3320..4533	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNZEC010000060.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.guided.50, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNZEC010000028.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.denovo.29, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNZEC010000056.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.guided.34, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNZEC010000028.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.denovo.29, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZEC010000056.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.guided.34, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNZEC010000031.1 Salmonella enterica strain PNUSAS356948 SAMN35801524-rid18521003.denovo.33, whole genome shotgun sequence	9109..9668																																																						avrA	ABNZEC010000003.1	39430..40299	99.655	870	0						
GCA_032785025.1_PDT001785779.1_genomic.fna	Salmonella_enterica	0.5222	285.035 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNZDZ010000003.1 Salmonella enterica strain PNUSAS356933 SAMN35801510-rid18531533.denovo.03, whole genome shotgun sequence	293514..293951	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNZDZ010000037.1 Salmonella enterica strain PNUSAS356933 SAMN35801510-rid18531533.guided.27, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZDZ010000020.1 Salmonella enterica strain PNUSAS356933 SAMN35801510-rid18531533.denovo.20, whole genome shotgun sequence	6073..6606																																																						avrA	ABNZDZ010000009.1	39460..40329	99.54	870	0						
GCA_032785065.1_PDT001785777.1_genomic.fna	Salmonella_enterica	0.5188	229.461 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZED010000001.1 Salmonella enterica strain PNUSAS356943 SAMN35801518-rid18525593.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZED010000042.1 Salmonella enterica strain PNUSAS356943 SAMN35801518-rid18525593.guided.35, whole genome shotgun sequence	2411..2848	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNZED010000008.1 Salmonella enterica strain PNUSAS356943 SAMN35801518-rid18525593.denovo.08, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNZED010000040.1 Salmonella enterica strain PNUSAS356943 SAMN35801518-rid18525593.guided.31, whole genome shotgun sequence	15365..15787	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZED010000002.1	170211..171080	99.195	870	0						
GCA_032785085.1_PDT001785776.1_genomic.fna	Salmonella_enterica	0.5212	406.416 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZEF010000001.1 Salmonella enterica strain PNUSAS356911 SAMN35801492-rid18518043.denovo.01, whole genome shotgun sequence	406659..407096	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZEF010000032.1 Salmonella enterica strain PNUSAS356911 SAMN35801492-rid18518043.guided.24, whole genome shotgun sequence	4138..4575	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNZEF010000021.1 Salmonella enterica strain PNUSAS356911 SAMN35801492-rid18518043.denovo.23, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNZEF010000023.1 Salmonella enterica strain PNUSAS356911 SAMN35801492-rid18518043.denovo.26, whole genome shotgun sequence	3364..3625		enterobacteriales	IncX1	98.66	374 / 374	ABNZEF010000022.1 Salmonella enterica strain PNUSAS356911 SAMN35801492-rid18518043.denovo.25, whole genome shotgun sequence	5887..6260																																									avrA	ABNZEF010000002.1	553181..554050	99.54	870	0						
GCA_032785125.1_PDT001785774.1_genomic.fna	Salmonella_enterica	0.5224	410.353 KB	5	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNZEJ010000004.1 Salmonella enterica strain PNUSAS356954 SAMN35801476-rid18528793.denovo.04, whole genome shotgun sequence	256215..256652	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNZEJ010000034.1 Salmonella enterica strain PNUSAS356954 SAMN35801476-rid18528793.guided.24, whole genome shotgun sequence	2069..2506	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNZEJ010000016.1 Salmonella enterica strain PNUSAS356954 SAMN35801476-rid18528793.denovo.16, whole genome shotgun sequence	59635..59776																																																						avrA	ABNZEJ010000002.1	508462..509331	99.31	870	0						
GCA_032785145.1_PDT001785773.1_genomic.fna	Salmonella_enterica	0.5207	478.615 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX4	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZEG010000002.1 Salmonella enterica strain PNUSAS356938 SAMN35801512-rid18519603.denovo.02, whole genome shotgun sequence	439907..440344	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZEG010000028.1 Salmonella enterica strain PNUSAS356938 SAMN35801512-rid18519603.guided.21, whole genome shotgun sequence	6297..6734	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZEG010000017.1 Salmonella enterica strain PNUSAS356938 SAMN35801512-rid18519603.denovo.17, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNZEG010000017.1 Salmonella enterica strain PNUSAS356938 SAMN35801512-rid18519603.denovo.17, whole genome shotgun sequence	5032..5293		enterobacteriales	IncX4	99.73	374 / 374	ABNZEG010000019.1 Salmonella enterica strain PNUSAS356938 SAMN35801512-rid18519603.denovo.19, whole genome shotgun sequence	1001..1374																																									avrA	ABNZEG010000001.1	553077..553946	99.54	870	0						
GCA_032785165.1_PDT001785772.1_genomic.fna	Salmonella_enterica	0.52	251.655 KB	6	aroC_10,dnaN_129*,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612*	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	99.8003992015968	100	dnaN_129*	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZEI010000005.1 Salmonella enterica strain PNUSAS356902 SAMN35801483-rid18523983.denovo.05, whole genome shotgun sequence	313146..313583	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZEI010000042.1 Salmonella enterica strain PNUSAS356902 SAMN35801483-rid18523983.guided.31, whole genome shotgun sequence	8005..8442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNZEI010000020.1 Salmonella enterica strain PNUSAS356902 SAMN35801483-rid18523983.denovo.20, whole genome shotgun sequence	59125..59767																																																																	
GCA_032785185.1_PDT001785771.1_genomic.fna	Salmonella_enterica	0.5208	447.219 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZEK010000001.1 Salmonella enterica strain PNUSAS356949 SAMN35801474-rid18519593.denovo.01, whole genome shotgun sequence	819348..819785	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZEK010000025.1 Salmonella enterica strain PNUSAS356949 SAMN35801474-rid18519593.guided.22, whole genome shotgun sequence	2283..2720	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZEK010000002.1	551047..551916	99.195	870	0						
GCA_032785205.1_PDT001785770.1_genomic.fna	Salmonella_enterica	0.5214	421.395 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZEH010000004.1 Salmonella enterica strain PNUSAS356936 SAMN35801515-rid18522443.denovo.04, whole genome shotgun sequence	162452..162889	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZEH010000030.1 Salmonella enterica strain PNUSAS356936 SAMN35801515-rid18522443.guided.25, whole genome shotgun sequence	1868..2305	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZEH010000018.1 Salmonella enterica strain PNUSAS356936 SAMN35801515-rid18522443.denovo.18, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNZEH010000018.1 Salmonella enterica strain PNUSAS356936 SAMN35801515-rid18522443.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABNZEH010000001.1	553077..553946	99.54	870	0						
GCA_032785225.1_PDT001785769.1_genomic.fna	Salmonella_enterica	0.5222	274.975 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZEL010000001.1 Salmonella enterica strain PNUSAS356912 SAMN35801477-rid18531523.denovo.01, whole genome shotgun sequence	381673..382110	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZEL010000039.1 Salmonella enterica strain PNUSAS356912 SAMN35801477-rid18531523.guided.30, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZEL010000003.1	208058..208926	99.77	870	0						
GCA_032785245.1_PDT001785767.1_genomic.fna	Salmonella_enterica	0.5202	236.978 KB	7	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZEN010000003.1 Salmonella enterica strain PNUSAS356914 SAMN35801479-rid18527213.denovo.03, whole genome shotgun sequence	363188..363625	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZEN010000055.1 Salmonella enterica strain PNUSAS356914 SAMN35801479-rid18527213.guided.34, whole genome shotgun sequence	11126..11563	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNZEN010000022.1 Salmonella enterica strain PNUSAS356914 SAMN35801479-rid18527213.denovo.22, whole genome shotgun sequence	14655..15297																																																																	
GCA_032785265.1_PDT001785768.1_genomic.fna	Salmonella_enterica	0.5209	473.953 KB	3	aroC_16,dnaN_16,hemD_20,hisD_602,purE_8,sucA_12,thrA_18	2177	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pSL483	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_602	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZEM010000001.1 Salmonella enterica strain PNUSAS356905 SAMN35801486-rid18518033.denovo.01, whole genome shotgun sequence	699796..700233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZEM010000021.1 Salmonella enterica strain PNUSAS356905 SAMN35801486-rid18518033.guided.17, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pSL483	99.4	995 / 995	ABNZEM010000014.1 Salmonella enterica strain PNUSAS356905 SAMN35801486-rid18518033.denovo.15, whole genome shotgun sequence	27209..28203																																																						avrA	ABNZEM010000002.1	541755..542621	99.08	870	0						
GCA_032785285.1_PDT001785766.1_genomic.fna	Salmonella_enterica	0.5214	456.244 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZEO010000005.1 Salmonella enterica strain PNUSAS356935 SAMN35801509-rid18518023.denovo.05, whole genome shotgun sequence	162541..162978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZEO010000031.1 Salmonella enterica strain PNUSAS356935 SAMN35801509-rid18518023.guided.23, whole genome shotgun sequence	5680..6117	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZEO010000018.1 Salmonella enterica strain PNUSAS356935 SAMN35801509-rid18518023.denovo.18, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNZEO010000018.1 Salmonella enterica strain PNUSAS356935 SAMN35801509-rid18518023.denovo.18, whole genome shotgun sequence	4416..4677																																																avrA	ABNZEO010000001.1	553046..553915	99.54	870	0						
GCA_032785305.1_PDT001785764.1_genomic.fna	Salmonella_enterica	0.5219	225.553 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZER010000017.1 Salmonella enterica strain PNUSAS356906 SAMN35801487-rid18530283.denovo.17, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZER010000042.1 Salmonella enterica strain PNUSAS356906 SAMN35801487-rid18530283.guided.29, whole genome shotgun sequence	33194..33631	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZER010000026.1 Salmonella enterica strain PNUSAS356906 SAMN35801487-rid18530283.denovo.26, whole genome shotgun sequence	44721..45363	enterobacteriales	IncFII(S)	100	262 / 262	ABNZER010000026.1 Salmonella enterica strain PNUSAS356906 SAMN35801487-rid18530283.denovo.26, whole genome shotgun sequence	29375..29636																																																avrA	ABNZER010000004.1	175018..175886	100	869	0						
GCA_032785325.1_PDT001785765.1_genomic.fna	Salmonella_enterica	0.5211	233.97 KB	8	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZEQ010000001.1 Salmonella enterica strain PNUSAS356910 SAMN35801491-rid18527203.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZEQ010000041.1 Salmonella enterica strain PNUSAS356910 SAMN35801491-rid18527203.guided.28, whole genome shotgun sequence	21996..22433	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZEQ010000023.1 Salmonella enterica strain PNUSAS356910 SAMN35801491-rid18527203.denovo.23, whole genome shotgun sequence	2806..3339																																																						avrA	ABNZEQ010000009.1	188219..189088	99.425	870	0						
GCA_032785345.1_PDT001785763.1_genomic.fna	Salmonella_enterica	0.5211	412.183 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZEP010000001.1 Salmonella enterica strain PNUSAS356909 SAMN35801490-rid18519583.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZEP010000029.1 Salmonella enterica strain PNUSAS356909 SAMN35801490-rid18519583.guided.21, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZEP010000020.1 Salmonella enterica strain PNUSAS356909 SAMN35801490-rid18519583.denovo.22, whole genome shotgun sequence	6837..7479	enterobacteriales	IncFII(S)	100	262 / 262	ABNZEP010000021.1 Salmonella enterica strain PNUSAS356909 SAMN35801490-rid18519583.denovo.24, whole genome shotgun sequence	3388..3649																																																avrA	ABNZEP010000002.1	553638..554507	99.54	870	0						
GCA_032785365.1_PDT001785762.1_genomic.fna	Salmonella_enterica	0.521	233.971 KB	6	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZES010000001.1 Salmonella enterica strain PNUSAS356901 SAMN35801482-rid18523973.denovo.01, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZES010000041.1 Salmonella enterica strain PNUSAS356901 SAMN35801482-rid18523973.guided.27, whole genome shotgun sequence	29790..30227	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZES010000022.1 Salmonella enterica strain PNUSAS356901 SAMN35801482-rid18523973.denovo.22, whole genome shotgun sequence	34958..35491																																																						avrA	ABNZES010000013.1	93988..94857	99.655	870	0						
GCA_032785385.1_PDT001785761.1_genomic.fna	Salmonella_enterica	0.5212	273.335 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZET010000001.1 Salmonella enterica strain PNUSAS356915 SAMN35801480-rid18520993.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZET010000052.1 Salmonella enterica strain PNUSAS356915 SAMN35801480-rid18520993.guided.37, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZET010000004.1	175027..175895	100	869	0						
GCA_032785405.1_PDT001785760.1_genomic.fna	Salmonella_enterica	0.5221	273.328 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZEU010000001.1 Salmonella enterica strain PNUSAS356903 SAMN35801484-rid18522433.denovo.01, whole genome shotgun sequence	392643..393080	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZEU010000037.1 Salmonella enterica strain PNUSAS356903 SAMN35801484-rid18522433.guided.29, whole genome shotgun sequence	6078..6515	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZEU010000017.1 Salmonella enterica strain PNUSAS356903 SAMN35801484-rid18522433.denovo.17, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNZEU010000017.1 Salmonella enterica strain PNUSAS356903 SAMN35801484-rid18522433.denovo.17, whole genome shotgun sequence	22559..22820																																																avrA	ABNZEU010000004.1	175018..175886	100	869	0						
GCA_032785425.1_PDT001785759.1_genomic.fna	Salmonella_enterica	0.5201	309.783 KB	6	aroC_16*,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118*	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	99.8003992015968	100	aroC_16*	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZEV010000001.1 Salmonella enterica strain PNUSAS356947 SAMN35801473-rid18531513.denovo.01, whole genome shotgun sequence	512004..512441	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZEV010000037.1 Salmonella enterica strain PNUSAS356947 SAMN35801473-rid18531513.guided.25, whole genome shotgun sequence	1240..1677	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZEV010000020.1 Salmonella enterica strain PNUSAS356947 SAMN35801473-rid18531513.denovo.20, whole genome shotgun sequence	2465..2998																																																						avrA	ABNZEV010000009.1	192382..193252	99.196	871	0						
GCA_032785445.1_PDT001785758.1_genomic.fna	Salmonella_enterica	0.5213	150.883 KB	11	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pMET)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZEY010000010.1 Salmonella enterica strain PNUSAS356908 SAMN35801489-rid18518013.denovo.10, whole genome shotgun sequence	42644..43081	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZEY010000075.1 Salmonella enterica strain PNUSAS356908 SAMN35801489-rid18518013.guided.61, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pMET)	97.23	577 / 577	ABNZEY010000055.1 Salmonella enterica strain PNUSAS356908 SAMN35801489-rid18518013.denovo.56, whole genome shotgun sequence	7497..8073																																																																	
GCA_032785465.1_PDT001785757.1_genomic.fna	Salmonella_enterica	0.5218	225.563 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZEW010000001.1 Salmonella enterica strain PNUSAS356900 SAMN35801481-rid18525583.denovo.01, whole genome shotgun sequence	458974..459411	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZEW010000048.1 Salmonella enterica strain PNUSAS356900 SAMN35801481-rid18525583.guided.35, whole genome shotgun sequence	2571..3008	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZEW010000030.1 Salmonella enterica strain PNUSAS356900 SAMN35801481-rid18525583.denovo.30, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABNZEW010000030.1 Salmonella enterica strain PNUSAS356900 SAMN35801481-rid18525583.denovo.30, whole genome shotgun sequence	9325..9586																																																avrA	ABNZEW010000005.1	94133..95002	99.885	870	0						
GCA_032785485.1_PDT001785756.1_genomic.fna	Salmonella_enterica	0.5198	156.167 KB	11	aroC_110,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2711	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_110	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNZEX010000001.1 Salmonella enterica strain PNUSAS356907 SAMN35801488-rid18518003.denovo.01, whole genome shotgun sequence	42641..43078	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNZEX010000063.1 Salmonella enterica strain PNUSAS356907 SAMN35801488-rid18518003.guided.42, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABNZEX010000039.1 Salmonella enterica strain PNUSAS356907 SAMN35801488-rid18518003.denovo.40, whole genome shotgun sequence	2610..3252																																																																	
GCA_032785505.1_PDT001785755.1_genomic.fna	Salmonella_enterica	0.5215	257.839 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZEZ010000002.1 Salmonella enterica strain PNUSAS356896 SAMN35801493-rid18531503.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZEZ010000047.1 Salmonella enterica strain PNUSAS356896 SAMN35801493-rid18531503.guided.33, whole genome shotgun sequence	88..525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	96.86	191 / 193	ABNZEZ010000038.1 Salmonella enterica strain PNUSAS356896 SAMN35801493-rid18531503.denovo.41, whole genome shotgun sequence	999..1189	enterobacteriales	IncFIB(S)	100	643 / 643	ABNZEZ010000024.1 Salmonella enterica strain PNUSAS356896 SAMN35801493-rid18531503.denovo.24, whole genome shotgun sequence	44724..45366		enterobacteriales	IncFII(S)	100	262 / 262	ABNZEZ010000024.1 Salmonella enterica strain PNUSAS356896 SAMN35801493-rid18531503.denovo.24, whole genome shotgun sequence	29378..29639																																									avrA	ABNZEZ010000001.1	446736..447604	100	869	0						
GCA_032785525.1_PDT001785754.1_genomic.fna	Salmonella_enterica	0.5232	473.295 KB	4	aroC_46,dnaN_54,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	127	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_54	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNZFA010000001.1 Salmonella enterica strain PNUSAS356952 SAMN35801472-rid18528783.denovo.01, whole genome shotgun sequence	667910..668347	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNZFA010000028.1 Salmonella enterica strain PNUSAS356952 SAMN35801472-rid18528783.guided.19, whole genome shotgun sequence	7605..8042	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZFA010000003.1	508616..509485	99.31	870	0						
GCA_032785545.1_PDT001785753.1_genomic.fna	Salmonella_enterica	0.5212	477.756 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZFB010000001.1 Salmonella enterica strain PNUSAS356899 SAMN35801449-rid18527193.denovo.01, whole genome shotgun sequence	846132..846569	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZFB010000029.1 Salmonella enterica strain PNUSAS356899 SAMN35801449-rid18527193.guided.20, whole genome shotgun sequence	10051..10488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZFB010000015.1 Salmonella enterica strain PNUSAS356899 SAMN35801449-rid18527193.denovo.15, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABNZFB010000015.1 Salmonella enterica strain PNUSAS356899 SAMN35801449-rid18527193.denovo.15, whole genome shotgun sequence	12906..13167																																																avrA	ABNZFB010000002.1	553190..554059	99.54	870	0						
GCA_032785605.1_PDT001941843.1_genomic.fna	Salmonella_enterica	0.5211	360.633 KB	5	aroC_152,dnaN_14,hemD_344,hisD_551,purE_89,sucA_313,thrA_2	1891	13:i:1,5	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_152	dnaN	100	100	dnaN_14	hemD	100	100	hemD_344	hisD	100	100	hisD_551	purE	100	100	purE_89	sucA	100	100	sucA_313	thrA	100	100	thrA_2	13	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	Idikan		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNZFH010000001.1 Salmonella enterica strain PNUSAS390693 SAMN37855972-rid19848983.denovo.01, whole genome shotgun sequence	153358..153795	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNZFH010000039.1 Salmonella enterica strain PNUSAS390693 SAMN37855972-rid19848983.guided.30, whole genome shotgun sequence	3296..3733	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNZFH010000003.1 Salmonella enterica strain PNUSAS390693 SAMN37855972-rid19848983.denovo.03, whole genome shotgun sequence	163416..163838	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNZFH010000040.1 Salmonella enterica strain PNUSAS390693 SAMN37855972-rid19848983.guided.33, whole genome shotgun sequence	448..870	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032785665.1_PDT001941847.1_genomic.fna	Salmonella_enterica	0.5191	156.817 KB	11	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZFG010000014.1 Salmonella enterica strain 23MO09CL02-S1 SAMN37855976-rid19849003.denovo.14, whole genome shotgun sequence	84420..84857	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZFG010000046.1 Salmonella enterica strain 23MO09CL02-S1 SAMN37855976-rid19849003.denovo.49, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZFG010000046.1 Salmonella enterica strain 23MO09CL02-S1 SAMN37855976-rid19849003.denovo.49, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNZFG010000072.1 Salmonella enterica strain 23MO09CL02-S1 SAMN37855976-rid19849003.guided.43, whole genome shotgun sequence	11471..11908	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZFG010000075.1 Salmonella enterica strain 23MO09CL02-S1 SAMN37855976-rid19849003.guided.56, whole genome shotgun sequence	2255..3091	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZFG010000075.1 Salmonella enterica strain 23MO09CL02-S1 SAMN37855976-rid19849003.guided.56, whole genome shotgun sequence	1452..2255	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNZFG010000050.1 Salmonella enterica strain 23MO09CL02-S1 SAMN37855976-rid19849003.denovo.53, whole genome shotgun sequence	1430..2635	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZFG010000074.1 Salmonella enterica strain 23MO09CL02-S1 SAMN37855976-rid19849003.guided.54, whole genome shotgun sequence	4117..5322	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNZFG010000041.1 Salmonella enterica strain 23MO09CL02-S1 SAMN37855976-rid19849003.denovo.42, whole genome shotgun sequence	1824..2505	enterobacteriales	IncFII	96.95	262 / 261	ABNZFG010000046.1 Salmonella enterica strain 23MO09CL02-S1 SAMN37855976-rid19849003.denovo.49, whole genome shotgun sequence	5800..6061		enterobacteriales	IncFII	96.95	262 / 261	ABNZFG010000075.1 Salmonella enterica strain 23MO09CL02-S1 SAMN37855976-rid19849003.guided.56, whole genome shotgun sequence	3714..3975		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNZFG010000035.1 Salmonella enterica strain 23MO09CL02-S1 SAMN37855976-rid19849003.denovo.35, whole genome shotgun sequence	33244..33385		enterobacteriales	IncX1	100	373 / 373	ABNZFG010000047.1 Salmonella enterica strain 23MO09CL02-S1 SAMN37855976-rid19849003.denovo.50, whole genome shotgun sequence	2153..2525																											avrA	ABNZFG010000015.1	100879..101748	99.655	870	0						
GCA_032785685.1_PDT001941839.1_genomic.fna	Salmonella_enterica	0.5215	225.447 KB	7	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZFI010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325675 SAMN37855966-rid19849843.denovo.01, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZFI010000045.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325675 SAMN37855966-rid19849843.guided.23, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032785705.1_PDT001941838.1_genomic.fna	Salmonella_enterica	0.5226	214.056 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZFJ010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325673 SAMN37855964-rid19848953.denovo.01, whole genome shotgun sequence	791116..791553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZFJ010000039.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325673 SAMN37855964-rid19848953.guided.27, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032785725.1_PDT001941822.1_genomic.fna	Salmonella_enterica	0.523	130.13 KB	12	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZFL010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325670 SAMN37855958-rid19848843.denovo.01, whole genome shotgun sequence	232155..232592	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZFL010000063.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325670 SAMN37855958-rid19848843.guided.41, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032785745.1_PDT001941837.1_genomic.fna	Salmonella_enterica	0.5226	487.391 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCoo)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNZFK010000009.1 Salmonella enterica strain PNUSAS390696 SAMN37855960-rid19848943.denovo.09, whole genome shotgun sequence	70822..71259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNZFK010000032.1 Salmonella enterica strain PNUSAS390696 SAMN37855960-rid19848943.guided.25, whole genome shotgun sequence	4858..5295	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCoo)	96.18	262 / 262	ABNZFK010000018.1 Salmonella enterica strain PNUSAS390696 SAMN37855960-rid19848943.denovo.18, whole genome shotgun sequence	55458..55718																																																						avrA	ABNZFK010000002.1	94222..95091	98.966	870	0						
GCA_032785765.1_PDT001941805.1_genomic.fna	Salmonella_enterica	0.5214	478.481 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZFN010000001.1 Salmonella enterica strain PNUSAS392351 SAMN37855886-rid19848753.denovo.01, whole genome shotgun sequence	293330..293767	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZFN010000028.1 Salmonella enterica strain PNUSAS392351 SAMN37855886-rid19848753.guided.22, whole genome shotgun sequence	1053..1490	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZFN010000013.1 Salmonella enterica strain PNUSAS392351 SAMN37855886-rid19848753.denovo.13, whole genome shotgun sequence	40575..41217	enterobacteriales	IncFII(S)	100	262 / 262	ABNZFN010000017.1 Salmonella enterica strain PNUSAS392351 SAMN37855886-rid19848753.denovo.18, whole genome shotgun sequence	3438..3699																																																avrA	ABNZFN010000002.1	553541..554410	99.54	870	0						
GCA_032785785.1_PDT001941804.1_genomic.fna	Salmonella_enterica	0.521	729.227 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZFO010000001.1 Salmonella enterica strain PNUSAS392355 SAMN37855880-rid19848743.denovo.01, whole genome shotgun sequence	686218..686655	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZFO010000020.1 Salmonella enterica strain PNUSAS392355 SAMN37855880-rid19848743.guided.11, whole genome shotgun sequence	22172..22609	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZFO010000003.1	561231..562101	99.656	871	0						
GCA_032785795.1_PDT001941810.1_genomic.fna	Salmonella_enterica	0.5215	406.117 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZFM010000001.1 Salmonella enterica strain PNUSAS392188 SAMN37855893-rid19848773.denovo.01, whole genome shotgun sequence	487911..488348	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZFM010000034.1 Salmonella enterica strain PNUSAS392188 SAMN37855893-rid19848773.guided.22, whole genome shotgun sequence	2554..2991	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZFM010000014.1 Salmonella enterica strain PNUSAS392188 SAMN37855893-rid19848773.denovo.14, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABNZFM010000018.1 Salmonella enterica strain PNUSAS392188 SAMN37855893-rid19848773.denovo.20, whole genome shotgun sequence	3407..3668																																																avrA	ABNZFM010000002.1	553678..554547	99.54	870	0						
GCA_032785825.1_PDT001941803.1_genomic.fna	Salmonella_enterica	0.5212	282.836 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aadA2,aadA1,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,tet(M),tet(B),tet(M),tet(B),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZFQ010000001.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.denovo.01, whole genome shotgun sequence	458896..459333	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNZFQ010000037.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.denovo.37, whole genome shotgun sequence	7085..7876	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNZFQ010000037.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.denovo.37, whole genome shotgun sequence	4680..5471	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNZFQ010000058.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.denovo.66, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZFQ010000058.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.denovo.66, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aadA2	100	792/792	ABNZFQ010000076.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.guided.42, whole genome shotgun sequence	6042..6833	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNZFQ010000077.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.guided.44, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNZFQ010000079.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.guided.49, whole genome shotgun sequence	1390..1827	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZFQ010000082.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.guided.65, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZFQ010000082.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.guided.65, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNZFQ010000055.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.denovo.62, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZFQ010000083.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.guided.67, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABNZFQ010000037.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.denovo.37, whole genome shotgun sequence	5564..6823	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNZFQ010000045.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.denovo.50, whole genome shotgun sequence	2154..3367	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABNZFQ010000076.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.guided.42, whole genome shotgun sequence	7095..8354	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNZFQ010000077.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.guided.44, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABNZFQ010000081.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.guided.57, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNZFQ010000084.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.guided.72, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNZFQ010000085.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.guided.73, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNZFQ010000086.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.guided.74, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZFQ010000087.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.guided.75, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(M)	96.15	1920/1920	ABNZFQ010000037.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.denovo.37, whole genome shotgun sequence	833..2752	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNZFQ010000039.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.denovo.40, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNZFQ010000077.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.guided.44, whole genome shotgun sequence	4527..6446	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNZFQ010000078.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.guided.47, whole genome shotgun sequence	3406..4611	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABNZFQ010000037.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.denovo.37, whole genome shotgun sequence	8284..8781	Trimethoprim	AM040708	dfrA12	100	498/498	ABNZFQ010000076.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.guided.42, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																															enterobacteriales	Col156	94.81	154 / 154	ABNZFQ010000043.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.denovo.46, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABNZFQ010000049.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.denovo.54, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABNZFQ010000056.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.denovo.63, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNZFQ010000033.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.denovo.33, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNZFQ010000027.1 Salmonella enterica strain PNUSAS392200 SAMN37855892-rid19848733.denovo.27, whole genome shotgun sequence	35178..35674																											avrA	ABNZFQ010000002.1	402713..403582	99.885	870	0						
GCA_032785845.1_PDT001941802.1_genomic.fna	Salmonella_enterica	0.5209	403.323 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZFP010000011.1 Salmonella enterica strain PNUSAS392350 SAMN37855885-rid19848723.denovo.11, whole genome shotgun sequence	37874..38311	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZFP010000039.1 Salmonella enterica strain PNUSAS392350 SAMN37855885-rid19848723.guided.24, whole genome shotgun sequence	13339..13776	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZFP010000017.1 Salmonella enterica strain PNUSAS392350 SAMN37855885-rid19848723.denovo.17, whole genome shotgun sequence	34959..35492																																																						avrA	ABNZFP010000001.1	187834..188700	98.966	870	0						
GCA_032785865.1_PDT001941800.1_genomic.fna	Salmonella_enterica	0.5212	245.431 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZFR010000001.1 Salmonella enterica strain PNUSAS392199 SAMN37855873-rid19848713.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZFR010000047.1 Salmonella enterica strain PNUSAS392199 SAMN37855873-rid19848713.guided.31, whole genome shotgun sequence	10342..10779	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZFR010000021.1 Salmonella enterica strain PNUSAS392199 SAMN37855873-rid19848713.denovo.21, whole genome shotgun sequence	2806..3339																																																						avrA	ABNZFR010000010.1	153640..154509	99.425	870	0						
GCA_032785885.1_PDT001941790.1_genomic.fna	Salmonella_enterica	0.5207	402.832 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZFT010000001.1 Salmonella enterica strain PNUSAS392192 SAMN37855874-rid19848653.denovo.01, whole genome shotgun sequence	628648..629085	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZFT010000031.1 Salmonella enterica strain PNUSAS392192 SAMN37855874-rid19848653.guided.23, whole genome shotgun sequence	389..826	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZFT010000017.1 Salmonella enterica strain PNUSAS392192 SAMN37855874-rid19848653.denovo.17, whole genome shotgun sequence	34944..35477																																																						avrA	ABNZFT010000013.1	93870..94740	99.196	871	0						
GCA_032785905.1_PDT001941798.1_genomic.fna	Salmonella_enterica	0.5226	443.924 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZFS010000001.1 Salmonella enterica strain PNUSAS392198 SAMN37855872-rid19848703.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZFS010000037.1 Salmonella enterica strain PNUSAS392198 SAMN37855872-rid19848703.guided.19, whole genome shotgun sequence	7524..7961	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNZFS010000023.1 Salmonella enterica strain PNUSAS392198 SAMN37855872-rid19848703.denovo.26, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNZFS010000039.1 Salmonella enterica strain PNUSAS392198 SAMN37855872-rid19848703.guided.29, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNZFS010000021.1 Salmonella enterica strain PNUSAS392198 SAMN37855872-rid19848703.denovo.24, whole genome shotgun sequence	1506..1636	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNZFS010000023.1 Salmonella enterica strain PNUSAS392198 SAMN37855872-rid19848703.denovo.26, whole genome shotgun sequence	1150..1280		enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNZFS010000024.1 Salmonella enterica strain PNUSAS392198 SAMN37855872-rid19848703.denovo.27, whole genome shotgun sequence	547..675																																									avrA	ABNZFS010000002.1	183234..184103	98.966	870	0						
GCA_032785945.1_PDT001941782.1_genomic.fna	Salmonella_enterica	0.5207	478.475 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZFV010000001.1 Salmonella enterica strain PNUSAS392354 SAMN37855882-rid19848613.denovo.01, whole genome shotgun sequence	492961..493398	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZFV010000034.1 Salmonella enterica strain PNUSAS392354 SAMN37855882-rid19848613.guided.24, whole genome shotgun sequence	1094..1531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZFV010000014.1 Salmonella enterica strain PNUSAS392354 SAMN37855882-rid19848613.denovo.14, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNZFV010000019.1 Salmonella enterica strain PNUSAS392354 SAMN37855882-rid19848613.denovo.21, whole genome shotgun sequence	3446..3707		enterobacteriales	IncX1	98.93	374 / 374	ABNZFV010000015.1 Salmonella enterica strain PNUSAS392354 SAMN37855882-rid19848613.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNZFV010000002.1	553690..554559	99.54	870	0						
GCA_032785965.1_PDT001941772.1_genomic.fna	Salmonella_enterica	0.5206	489.864 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZFW010000001.1 Salmonella enterica strain PNUSAS392349 SAMN37855857-rid19849563.denovo.01, whole genome shotgun sequence	502507..502944	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZFW010000028.1 Salmonella enterica strain PNUSAS392349 SAMN37855857-rid19849563.guided.20, whole genome shotgun sequence	3079..3516	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZFW010000013.1 Salmonella enterica strain PNUSAS392349 SAMN37855857-rid19849563.denovo.13, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNZFW010000013.1 Salmonella enterica strain PNUSAS392349 SAMN37855857-rid19849563.denovo.13, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNZFW010000014.1 Salmonella enterica strain PNUSAS392349 SAMN37855857-rid19849563.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNZFW010000002.1	553690..554559	99.54	870	0						
GCA_032785985.1_PDT001941771.1_genomic.fna	Salmonella_enterica	0.5214	478.48 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZFY010000001.1 Salmonella enterica strain PNUSAS392181 SAMN37855859-rid19849553.denovo.01, whole genome shotgun sequence	493079..493516	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZFY010000027.1 Salmonella enterica strain PNUSAS392181 SAMN37855859-rid19849553.guided.21, whole genome shotgun sequence	990..1427	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZFY010000013.1 Salmonella enterica strain PNUSAS392181 SAMN37855859-rid19849553.denovo.13, whole genome shotgun sequence	40575..41217	enterobacteriales	IncFII(S)	100	262 / 262	ABNZFY010000017.1 Salmonella enterica strain PNUSAS392181 SAMN37855859-rid19849553.denovo.19, whole genome shotgun sequence	3388..3649																																																avrA	ABNZFY010000002.1	553678..554547	99.54	870	0						
GCA_032786005.1_PDT001941770.1_genomic.fna	Salmonella_enterica	0.5224	496.418 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(Yp)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZFX010000001.1 Salmonella enterica strain PNUSAS392180 SAMN37855858-rid19848563.denovo.01, whole genome shotgun sequence	790200..790637	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZFX010000024.1 Salmonella enterica strain PNUSAS392180 SAMN37855858-rid19848563.guided.17, whole genome shotgun sequence	13062..13499	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	92.64	231 / 230	ABNZFX010000013.1 Salmonella enterica strain PNUSAS392180 SAMN37855858-rid19848563.denovo.13, whole genome shotgun sequence	28270..28498																																																						avrA	ABNZFX010000004.1	183135..184004	98.966	870	0						
GCA_032786025.1_PDT001941768.1_genomic.fna	Salmonella_enterica	0.5209	443.924 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZFZ010000001.1 Salmonella enterica strain PNUSAS392322 SAMN37855797-rid19848553.denovo.01, whole genome shotgun sequence	866491..866928	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZFZ010000029.1 Salmonella enterica strain PNUSAS392322 SAMN37855797-rid19848553.guided.19, whole genome shotgun sequence	5443..5880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZFZ010000002.1	147026..147895	98.966	870	0						
GCA_032786045.1_PDT001941765.1_genomic.fna	Salmonella_enterica	0.5223	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZGC010000001.1 Salmonella enterica strain PNUSAS392323 SAMN37855798-rid19848543.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZGC010000023.1 Salmonella enterica strain PNUSAS392323 SAMN37855798-rid19848543.guided.14, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZGC010000002.1	183135..184004	98.966	870	0						
GCA_032786065.1_PDT001941766.1_genomic.fna	Salmonella_enterica	0.5225	399.292 KB	3	aroC_11,dnaN_10,hemD_25,hisD_42,purE_40,sucA_13,thrA_4	411	4:e,h:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZGA010000001.1 Salmonella enterica strain PNUSAS392319 SAMN37855794-rid19849523.denovo.01, whole genome shotgun sequence	623465..623902	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZGA010000022.1 Salmonella enterica strain PNUSAS392319 SAMN37855794-rid19849523.guided.18, whole genome shotgun sequence	817..1254	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZGA010000002.1	95131..96000	99.54	870	0						
GCA_032786125.1_PDT001941760.1_genomic.fna	Salmonella_enterica	0.5219	391.762 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZGD010000001.1 Salmonella enterica strain PNUSAS392321 SAMN37855796-rid19848523.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZGD010000036.1 Salmonella enterica strain PNUSAS392321 SAMN37855796-rid19848523.guided.24, whole genome shotgun sequence	5802..6239	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZGD010000003.1	120799..121668	99.31	870	0						
GCA_032786145.1_PDT001941756.1_genomic.fna	Salmonella_enterica	0.522	272.611 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,mph(A),mph(A),floR,floR,qnrB19,qnrB19,sul2,sul2,tet(B),tet(A),tet(B),tet(A),dfrA17,dfrA17	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZGF010000001.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.denovo.01, whole genome shotgun sequence	590554..590991	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZGF010000030.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.denovo.31, whole genome shotgun sequence	5429..6265	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZGF010000030.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.denovo.31, whole genome shotgun sequence	4626..5429	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNZGF010000053.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.guided.36, whole genome shotgun sequence	4420..4857	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZGF010000055.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.guided.39, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZGF010000055.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.guided.39, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNZGF010000030.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.denovo.31, whole genome shotgun sequence	495..1355	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZGF010000061.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.guided.56, whole genome shotgun sequence	246..1106	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABNZGF010000035.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.denovo.40, whole genome shotgun sequence	3276..4181	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	ABNZGF010000057.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.guided.44, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNZGF010000030.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.denovo.31, whole genome shotgun sequence	9401..10614	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNZGF010000056.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.guided.42, whole genome shotgun sequence	2237..3450	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNZGF010000043.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.denovo.51, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNZGF010000058.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.guided.48, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABNZGF010000030.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.denovo.31, whole genome shotgun sequence	3750..4565	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZGF010000055.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.guided.39, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNZGF010000029.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.denovo.29, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	99.92	1275/1275	ABNZGF010000030.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.denovo.31, whole genome shotgun sequence	7526..8800	Doxycycline, Tetracycline	AF534183	tet(B)	100	1206/1206	ABNZGF010000054.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.guided.37, whole genome shotgun sequence	4931..6136	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	99.92	1275/1275	ABNZGF010000060.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.guided.54, whole genome shotgun sequence	1195..2469	Doxycycline, Tetracycline	AF534183	dfrA17	100	474/474	ABNZGF010000040.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.denovo.47, whole genome shotgun sequence	77..550	Trimethoprim	FJ460238	dfrA17	100	474/474	ABNZGF010000059.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.guided.53, whole genome shotgun sequence	1910..2383	Trimethoprim	FJ460238																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	100	131 / 131	ABNZGF010000043.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.denovo.51, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNZGF010000058.1 Salmonella enterica strain PNUSAS392315 SAMN37855789-rid19848503.guided.48, whole genome shotgun sequence	2044..2174																																																avrA	ABNZGF010000002.1	516536..517405	99.885	870	0						
GCA_032786165.1_PDT001941753.1_genomic.fna	Salmonella_enterica	0.5223	684.726 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pMET)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNZGH010000001.1 Salmonella enterica strain PNUSAS392327 SAMN37855558-rid19848483.denovo.01, whole genome shotgun sequence	995380..995817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNZGH010000022.1 Salmonella enterica strain PNUSAS392327 SAMN37855558-rid19848483.guided.16, whole genome shotgun sequence	24108..24545	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pMET)	98.27	577 / 577	ABNZGH010000014.1 Salmonella enterica strain PNUSAS392327 SAMN37855558-rid19848483.denovo.15, whole genome shotgun sequence	28348..28924																																																						avrA	ABNZGH010000003.1	543750..544619	99.54	870	0						
GCA_032786185.1_PDT001941755.1_genomic.fna	Salmonella_enterica	0.5226	203.651 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZGG010000001.1 Salmonella enterica strain PNUSAS392314 SAMN37855788-rid19848493.denovo.01, whole genome shotgun sequence	572211..572648	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZGG010000036.1 Salmonella enterica strain PNUSAS392314 SAMN37855788-rid19848493.guided.26, whole genome shotgun sequence	1697..2134	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZGG010000004.1	149828..150697	99.655	870	0						
GCA_032786205.1_PDT001941751.1_genomic.fna	Salmonella_enterica	0.5223	684.334 KB	3	aroC_18,dnaN_436,hemD_349,hisD_12,purE_193,sucA_14,thrA_12	2014	28:z10:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_436	hemD	100	100	hemD_349	hisD	100	100	hisD_12	purE	100	100	purE_193	sucA	100	100	sucA_14	thrA	100	100	thrA_12	28	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Umbilo		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNZGI010000001.1 Salmonella enterica strain PNUSAS392336 SAMN37855567-rid19848473.denovo.01, whole genome shotgun sequence	670927..671364	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNZGI010000015.1 Salmonella enterica strain PNUSAS392336 SAMN37855567-rid19848473.guided.10, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZGI010000004.1	587757..588626	99.54	870	0						
GCA_032786245.1_PDT001941747.1_genomic.fna	Salmonella_enterica	0.5228	560.92 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_12	434	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_12	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNZGJ010000001.1 Salmonella enterica strain PNUSAS392294 SAMN37855552-rid19848443.denovo.01, whole genome shotgun sequence	1046730..1047167	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNZGJ010000027.1 Salmonella enterica strain PNUSAS392294 SAMN37855552-rid19848443.guided.21, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZGJ010000003.1	419883..420752	99.425	870	0						
GCA_032786265.1_PDT001941744.1_genomic.fna	Salmonella_enterica	0.5219	337.988 KB	5	aroC_84,dnaN_76,hemD_38,hisD_16,purE_12,sucA_13,thrA_4	226	6,14:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_76	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	6,14	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Carrau		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZGM010000001.1 Salmonella enterica strain PNUSAS392331 SAMN37855562-rid19849433.denovo.01, whole genome shotgun sequence	257284..257721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZGM010000032.1 Salmonella enterica strain PNUSAS392331 SAMN37855562-rid19849433.guided.14, whole genome shotgun sequence	44271..44708	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZGM010000002.1	148325..149193	98.851	870	0						
GCA_032786285.1_PDT001941746.1_genomic.fna	Salmonella_enterica	0.5217	367.995 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZGL010000001.1 Salmonella enterica strain PNUSAS392329 SAMN37855560-rid19848433.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZGL010000033.1 Salmonella enterica strain PNUSAS392329 SAMN37855560-rid19848433.guided.19, whole genome shotgun sequence	12724..13161	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNZGL010000014.1 Salmonella enterica strain PNUSAS392329 SAMN37855560-rid19848433.denovo.14, whole genome shotgun sequence	65922..67127	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZGL010000036.1 Salmonella enterica strain PNUSAS392329 SAMN37855560-rid19848433.guided.23, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNZGL010000014.1 Salmonella enterica strain PNUSAS392329 SAMN37855560-rid19848433.denovo.14, whole genome shotgun sequence	73513..73654	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNZGL010000036.1 Salmonella enterica strain PNUSAS392329 SAMN37855560-rid19848433.guided.23, whole genome shotgun sequence	3169..3310																																																avrA	ABNZGL010000002.1	149828..150697	99.54	870	0						
GCA_032786305.1_PDT001941741.1_genomic.fna	Salmonella_enterica	0.5226	367.997 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZGN010000001.1 Salmonella enterica strain PNUSAS392339 SAMN37855570-rid19848403.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZGN010000027.1 Salmonella enterica strain PNUSAS392339 SAMN37855570-rid19848403.guided.15, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZGN010000002.1	149828..150697	99.655	870	0						
GCA_032786325.1_PDT001941738.1_genomic.fna	Salmonella_enterica	0.5212	660.454 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZGO010000001.1 Salmonella enterica strain PNUSAS392330 SAMN37855561-rid19848383.denovo.01, whole genome shotgun sequence	398391..398828	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZGO010000026.1 Salmonella enterica strain PNUSAS392330 SAMN37855561-rid19848383.guided.22, whole genome shotgun sequence	1101..1538	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.39	446 / 445	ABNZGO010000011.1 Salmonella enterica strain PNUSAS392330 SAMN37855561-rid19848383.denovo.11, whole genome shotgun sequence	39786..40230	enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABNZGO010000011.1 Salmonella enterica strain PNUSAS392330 SAMN37855561-rid19848383.denovo.11, whole genome shotgun sequence	40491..40703																																																avrA	ABNZGO010000003.1	496398..497266	99.425	870	0						
GCA_032786345.1_PDT001941737.1_genomic.fna	Salmonella_enterica	0.5219	372.912 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZGP010000001.1 Salmonella enterica strain PNUSAS392325 SAMN37855556-rid19848373.denovo.01, whole genome shotgun sequence	498141..498578	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZGP010000031.1 Salmonella enterica strain PNUSAS392325 SAMN37855556-rid19848373.guided.23, whole genome shotgun sequence	4976..5413	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZGP010000008.1	140447..141316	99.425	870	0						
GCA_032786365.1_PDT001941729.1_genomic.fna	Salmonella_enterica	0.5216	228.553 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZGR010000002.1 Salmonella enterica strain PNUSAS392337 SAMN37855568-rid19849383.denovo.02, whole genome shotgun sequence	63836..64273	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZGR010000055.1 Salmonella enterica strain PNUSAS392337 SAMN37855568-rid19849383.guided.34, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNZGR010000013.1 Salmonella enterica strain PNUSAS392337 SAMN37855568-rid19849383.denovo.13, whole genome shotgun sequence	121736..122378																																																																	
GCA_032786385.1_PDT001941731.1_genomic.fna	Salmonella_enterica	0.5198	490.636 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZGS010000001.1 Salmonella enterica strain PNUSAS392295 SAMN37855551-rid19848333.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZGS010000027.1 Salmonella enterica strain PNUSAS392295 SAMN37855551-rid19848333.guided.22, whole genome shotgun sequence	5012..5449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZGS010000018.1 Salmonella enterica strain PNUSAS392295 SAMN37855551-rid19848333.denovo.19, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNZGS010000019.1 Salmonella enterica strain PNUSAS392295 SAMN37855551-rid19848333.denovo.21, whole genome shotgun sequence	3414..3675		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNZGS010000012.1 Salmonella enterica strain PNUSAS392295 SAMN37855551-rid19848333.denovo.12, whole genome shotgun sequence	76283..76424		enterobacteriales	IncI2(Delta)	97.15	316 / 316	ABNZGS010000013.1 Salmonella enterica strain PNUSAS392295 SAMN37855551-rid19848333.denovo.13, whole genome shotgun sequence	42001..42316																																		avrA	ABNZGS010000002.1	553359..554228	99.54	870	0						
GCA_032786405.1_PDT001941726.1_genomic.fna	Salmonella_enterica	0.5225	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZGU010000001.1 Salmonella enterica strain PNUSAS392346 SAMN37855540-rid19848293.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZGU010000036.1 Salmonella enterica strain PNUSAS392346 SAMN37855540-rid19848293.guided.21, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZGU010000002.1	143956..144825	99.655	870	0						
GCA_032786425.1_PDT001941728.1_genomic.fna	Salmonella_enterica	0.5203	182.353 KB	8	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZGT010000001.1 Salmonella enterica strain PNUSAS392259 SAMN37855543-rid19848313.denovo.01, whole genome shotgun sequence	458977..459414	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZGT010000059.1 Salmonella enterica strain PNUSAS392259 SAMN37855543-rid19848313.guided.46, whole genome shotgun sequence	776..1213	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZGT010000023.1 Salmonella enterica strain PNUSAS392259 SAMN37855543-rid19848313.denovo.23, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABNZGT010000023.1 Salmonella enterica strain PNUSAS392259 SAMN37855543-rid19848313.denovo.23, whole genome shotgun sequence	22559..22820		enterobacteriales	IncX1	98.13	374 / 377	ABNZGT010000027.1 Salmonella enterica strain PNUSAS392259 SAMN37855543-rid19848313.denovo.27, whole genome shotgun sequence	31782..32155																																									avrA	ABNZGT010000004.1	207591..208460	99.885	870	0						
GCA_032786445.1_PDT001941733.1_genomic.fna	Salmonella_enterica	0.5227	388.092 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNZGQ010000002.1 Salmonella enterica strain PNUSAS392275 SAMN37855496-rid19848343.denovo.02, whole genome shotgun sequence	405412..405849	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNZGQ010000036.1 Salmonella enterica strain PNUSAS392275 SAMN37855496-rid19848343.guided.21, whole genome shotgun sequence	5077..5514	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZGQ010000008.1	94166..95034	99.425	870	0						
GCA_032786465.1_PDT001941725.1_genomic.fna	Salmonella_enterica	0.5233	466.78 KB	4	aroC_111,dnaN_109,hemD_17,hisD_149,purE_41,sucA_13,thrA_23	451	28:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_109	hemD	100	100	hemD_17	hisD	100	100	hisD_149	purE	100	100	purE_41	sucA	100	100	sucA_13	thrA	100	100	thrA_23	28	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Pomona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZGV010000001.1 Salmonella enterica strain PNUSAS392279 SAMN37855491-rid19848283.denovo.01, whole genome shotgun sequence	620459..620896	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZGV010000024.1 Salmonella enterica strain PNUSAS392279 SAMN37855491-rid19848283.guided.19, whole genome shotgun sequence	4038..4475	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZGV010000003.1	39444..40313	99.54	870	0						
GCA_032786485.1_PDT001941724.1_genomic.fna	Salmonella_enterica	0.5213	412.518 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZGW010000001.1 Salmonella enterica strain PNUSAS392280 SAMN37855490-rid19849373.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZGW010000028.1 Salmonella enterica strain PNUSAS392280 SAMN37855490-rid19849373.guided.19, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZGW010000016.1 Salmonella enterica strain PNUSAS392280 SAMN37855490-rid19849373.denovo.17, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNZGW010000017.1 Salmonella enterica strain PNUSAS392280 SAMN37855490-rid19849373.denovo.20, whole genome shotgun sequence	3403..3664																																																avrA	ABNZGW010000002.1	552861..553730	99.54	870	0						
GCA_032786505.1_PDT001941720.1_genomic.fna	Salmonella_enterica	0.5205	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZGX010000001.1 Salmonella enterica strain PNUSAS392281 SAMN37855489-rid19848253.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZGX010000031.1 Salmonella enterica strain PNUSAS392281 SAMN37855489-rid19848253.guided.13, whole genome shotgun sequence	36782..37219	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZGX010000019.1 Salmonella enterica strain PNUSAS392281 SAMN37855489-rid19848253.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNZGX010000014.1 Salmonella enterica strain PNUSAS392281 SAMN37855489-rid19848253.denovo.15, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNZGX010000015.1 Salmonella enterica strain PNUSAS392281 SAMN37855489-rid19848253.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNZGX010000002.1	553362..554231	99.54	870	0						
GCA_032786525.1_PDT001941712.1_genomic.fna	Salmonella_enterica	0.5213	562.958 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZGY010000001.1 Salmonella enterica strain PNUSAS392342 SAMN37855572-rid19849333.denovo.01, whole genome shotgun sequence	255278..255715	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZGY010000029.1 Salmonella enterica strain PNUSAS392342 SAMN37855572-rid19849333.guided.24, whole genome shotgun sequence	2938..3375	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.39	446 / 445	ABNZGY010000014.1 Salmonella enterica strain PNUSAS392342 SAMN37855572-rid19849333.denovo.14, whole genome shotgun sequence	39786..40230	enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABNZGY010000014.1 Salmonella enterica strain PNUSAS392342 SAMN37855572-rid19849333.denovo.14, whole genome shotgun sequence	40491..40703																																																avrA	ABNZGY010000008.1	94354..95222	99.425	870	0						
GCA_032786545.1_PDT001941711.1_genomic.fna	Salmonella_enterica	0.5215	406.143 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZGZ010000001.1 Salmonella enterica strain PNUSAS392287 SAMN37855493-rid19848193.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZGZ010000030.1 Salmonella enterica strain PNUSAS392287 SAMN37855493-rid19848193.guided.23, whole genome shotgun sequence	1615..2052	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZGZ010000018.1 Salmonella enterica strain PNUSAS392287 SAMN37855493-rid19848193.denovo.20, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNZGZ010000020.1 Salmonella enterica strain PNUSAS392287 SAMN37855493-rid19848193.denovo.22, whole genome shotgun sequence	3401..3662																																																avrA	ABNZGZ010000002.1	553636..554505	99.54	870	0						
GCA_032786565.1_PDT001941891.1_genomic.fna	Salmonella_enterica	0.5192	417.615 KB	5	aroC_43,dnaN_47,hemD_49,hisD_16,purE_41,sucA_15,thrA_3	241	4:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Bredeney		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZHA010000001.1 Salmonella enterica strain PNUSAS392128 SAMN37856544-rid19850043.denovo.01, whole genome shotgun sequence	82628..83065	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZHA010000026.1 Salmonella enterica strain PNUSAS392128 SAMN37856544-rid19850043.guided.19, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	97.93	193 / 193	ABNZHA010000022.1 Salmonella enterica strain PNUSAS392128 SAMN37856544-rid19850043.denovo.25, whole genome shotgun sequence	203..395																																																						avrA	ABNZHA010000002.1	501921..502789	98.851	870	0						
GCA_032786585.1_PDT001941871.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZHC010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325756 SAMN37856158-rid19849963.denovo.01, whole genome shotgun sequence	293266..293703	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZHC010000027.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325756 SAMN37856158-rid19849963.guided.16, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZHC010000019.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325756 SAMN37856158-rid19849963.denovo.21, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNZHC010000021.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325756 SAMN37856158-rid19849963.denovo.24, whole genome shotgun sequence	3418..3679																																																avrA	ABNZHC010000002.1	553636..554505	99.54	870	0						
GCA_032786605.1_PDT001941874.1_genomic.fna	Salmonella_enterica	0.5214	396.723 KB	5	aroC_2,dnaN_59,hemD_23,hisD_64,purE_38,sucA_19,thrA_12	1499	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_59	hemD	100	100	hemD_23	hisD	100	100	hisD_64	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZHB010000002.1 Salmonella enterica strain PNUSAS392369 SAMN37856222-rid19849973.denovo.02, whole genome shotgun sequence	146196..146633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZHB010000039.1 Salmonella enterica strain PNUSAS392369 SAMN37856222-rid19849973.guided.23, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZHB010000001.1	511508..512378	99.311	871	0						
GCA_032786625.1_PDT001941864.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZHF010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325752 SAMN37856077-rid19849943.denovo.01, whole genome shotgun sequence	771821..772258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZHF010000031.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325752 SAMN37856077-rid19849943.guided.15, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZHF010000018.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325752 SAMN37856077-rid19849943.denovo.20, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABNZHF010000020.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325752 SAMN37856077-rid19849943.denovo.23, whole genome shotgun sequence	3423..3684																																																avrA	ABNZHF010000002.1	553636..554505	99.54	870	0						
GCA_032786645.1_PDT001941866.1_genomic.fna	Salmonella_enterica	0.5212	329.868 KB	5	aroC_347,dnaN_394,hemD_78,hisD_496,purE_426,sucA_9,thrA_102	1549	8:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_347	dnaN	100	100	dnaN_394	hemD	100	100	hemD_78	hisD	100	100	hisD_496	purE	100	100	purE_426	sucA	100	100	sucA_9	thrA	100	100	thrA_102	8	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Altona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZHD010000001.1 Salmonella enterica subsp. enterica serovar Altona strain FSIS12325758 SAMN37856150-rid19849953.denovo.01, whole genome shotgun sequence	735500..735937	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZHD010000036.1 Salmonella enterica subsp. enterica serovar Altona strain FSIS12325758 SAMN37856150-rid19849953.guided.27, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZHD010000003.1	431118..431987	99.195	870	0						
GCA_032786665.1_PDT001941862.1_genomic.fna	Salmonella_enterica	0.5212	510.11 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZHG010000001.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325753 SAMN37856078-rid19849093.denovo.01, whole genome shotgun sequence	118416..118853	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZHG010000031.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325753 SAMN37856078-rid19849093.guided.19, whole genome shotgun sequence	2623..3060	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNZHG010000023.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325753 SAMN37856078-rid19849093.denovo.26, whole genome shotgun sequence	805..997																																																						avrA	ABNZHG010000004.1	162698..163567	98.966	870	0						
GCA_032786685.1_PDT001941863.1_genomic.fna	Salmonella_enterica	0.5214	203.758 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZHE010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325751 SAMN37856076-rid19849103.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNZHE010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325751 SAMN37856076-rid19849103.denovo.28, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZHE010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325751 SAMN37856076-rid19849103.denovo.28, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNZHE010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325751 SAMN37856076-rid19849103.guided.26, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNZHE010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325751 SAMN37856076-rid19849103.guided.29, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZHE010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325751 SAMN37856076-rid19849103.guided.29, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNZHE010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325751 SAMN37856076-rid19849103.denovo.28, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNZHE010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325751 SAMN37856076-rid19849103.guided.29, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNZHE010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325751 SAMN37856076-rid19849103.denovo.28, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZHE010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325751 SAMN37856076-rid19849103.guided.29, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNZHE010000011.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325751 SAMN37856076-rid19849103.denovo.11, whole genome shotgun sequence	140422..140981																																																						avrA	ABNZHE010000002.1	94085..94954	99.655	870	0						
GCA_032786705.1_PDT001941861.1_genomic.fna	Salmonella_enterica	0.5225	356.756 KB	5	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZHI010000003.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325736 SAMN37856037-rid19849933.denovo.03, whole genome shotgun sequence	252456..252893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZHI010000030.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325736 SAMN37856037-rid19849933.denovo.33, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNZHI010000030.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325736 SAMN37856037-rid19849933.denovo.33, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNZHI010000030.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325736 SAMN37856037-rid19849933.denovo.33, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNZHI010000030.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325736 SAMN37856037-rid19849933.denovo.33, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNZHI010000030.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325736 SAMN37856037-rid19849933.denovo.33, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNZHI010000044.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325736 SAMN37856037-rid19849933.guided.27, whole genome shotgun sequence	8347..8784	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZHI010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325736 SAMN37856037-rid19849933.guided.36, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNZHI010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325736 SAMN37856037-rid19849933.guided.36, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNZHI010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325736 SAMN37856037-rid19849933.guided.36, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNZHI010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325736 SAMN37856037-rid19849933.guided.36, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNZHI010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325736 SAMN37856037-rid19849933.guided.36, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNZHI010000031.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325736 SAMN37856037-rid19849933.denovo.35, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZHI010000046.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325736 SAMN37856037-rid19849933.guided.34, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABNZHI010000034.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325736 SAMN37856037-rid19849933.denovo.39, whole genome shotgun sequence	805..997																																																						avrA	ABNZHI010000010.1	39546..40415	99.655	870	0						
GCA_032786725.1_PDT001941859.1_genomic.fna	Salmonella_enterica	0.522	164.256 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZHH010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325738 SAMN37856039-rid19849923.denovo.01, whole genome shotgun sequence	146115..146552	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNZHH010000043.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325738 SAMN37856039-rid19849923.denovo.46, whole genome shotgun sequence	12506..13408	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNZHH010000043.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325738 SAMN37856039-rid19849923.denovo.46, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABNZHH010000071.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325738 SAMN37856039-rid19849923.guided.43, whole genome shotgun sequence	10481..10918	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNZHH010000074.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325738 SAMN37856039-rid19849923.guided.60, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNZHH010000075.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325738 SAMN37856039-rid19849923.guided.62, whole genome shotgun sequence	3505..4296	Spectinomycin, Streptomycin	JQ414041	sul2	100	816/816	ABNZHH010000025.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325738 SAMN37856039-rid19849923.denovo.25, whole genome shotgun sequence	5076..5891	Sulfamethoxazole	AY034138	sul1	99.88	840/840	ABNZHH010000043.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325738 SAMN37856039-rid19849923.denovo.46, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul2	100	816/816	ABNZHH010000069.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325738 SAMN37856039-rid19849923.guided.30, whole genome shotgun sequence	44584..45399	Sulfamethoxazole	AY034138	sul1	99.88	840/840	ABNZHH010000073.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325738 SAMN37856039-rid19849923.guided.55, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABNZHH010000025.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325738 SAMN37856039-rid19849923.denovo.25, whole genome shotgun sequence	1700..2899	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNZHH010000061.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325738 SAMN37856039-rid19849923.denovo.70, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABNZHH010000076.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325738 SAMN37856039-rid19849923.guided.63, whole genome shotgun sequence	477..1676	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABNZHH010000077.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325738 SAMN37856039-rid19849923.guided.69, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNZHH010000055.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325738 SAMN37856039-rid19849923.denovo.61, whole genome shotgun sequence	371..501																																																						avrA	ABNZHH010000012.1	118791..119660	99.885	870	0						
GCA_032786745.1_PDT001941856.1_genomic.fna	Salmonella_enterica	0.5223	121.848 KB	14	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZHJ010000012.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.denovo.12, whole genome shotgun sequence	52529..52966	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZHJ010000061.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.denovo.66, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNZHJ010000061.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.denovo.66, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNZHJ010000061.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.denovo.66, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNZHJ010000061.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.denovo.66, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNZHJ010000061.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.denovo.66, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNZHJ010000077.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.guided.45, whole genome shotgun sequence	12448..12885	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZHJ010000081.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.guided.65, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNZHJ010000081.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.guided.65, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNZHJ010000081.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.guided.65, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNZHJ010000081.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.guided.65, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNZHJ010000081.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.guided.65, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	blaTEM-220	99.88	861/861	ABNZHJ010000059.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.denovo.62, whole genome shotgun sequence	5389..6249	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNZHJ010000059.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.denovo.62, whole genome shotgun sequence	5389..6249	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNZHJ010000059.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.denovo.62, whole genome shotgun sequence	5389..6249	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNZHJ010000059.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.denovo.62, whole genome shotgun sequence	5389..6249	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNZHJ010000059.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.denovo.62, whole genome shotgun sequence	5389..6249	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	ABNZHJ010000080.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.guided.63, whole genome shotgun sequence	4593..5453	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABNZHJ010000080.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.guided.63, whole genome shotgun sequence	4593..5453	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABNZHJ010000080.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.guided.63, whole genome shotgun sequence	4593..5453	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABNZHJ010000080.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.guided.63, whole genome shotgun sequence	4593..5453	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABNZHJ010000080.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.guided.63, whole genome shotgun sequence	4593..5453	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	ABNZHJ010000063.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.denovo.69, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZHJ010000082.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325731 SAMN37855984-rid19849913.guided.68, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZHJ010000026.1	39546..40415	99.655	870	0						
GCA_032786765.1_PDT001941851.1_genomic.fna	Salmonella_enterica	0.5221	75.905 KB	19	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	1,3,19:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	1,3,19	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Hayindogo		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNZHL010000019.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325728 SAMN37855981-rid19849893.denovo.019, whole genome shotgun sequence	13069..13506	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNZHL010000115.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325728 SAMN37855981-rid19849893.guided.060, whole genome shotgun sequence	14111..14548	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZHL010000008.1	43553..44422	99.425	870	0						
GCA_032786785.1_PDT001941852.1_genomic.fna	Salmonella_enterica	0.5202	91.509 KB	17	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNZHK010000010.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12325733 SAMN37855986-rid19849033.denovo.010, whole genome shotgun sequence	31680..32117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNZHK010000135.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12325733 SAMN37855986-rid19849033.guided.090, whole genome shotgun sequence	4059..4496	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNZHK010000095.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12325733 SAMN37855986-rid19849033.denovo.098, whole genome shotgun sequence	2209..2339																																																						avrA	ABNZHK010000037.1	39350..40219	99.54	870	0						
GCA_032786805.1_PDT001941850.1_genomic.fna	Salmonella_enterica	0.522	257.786 KB	9	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZHM010000003.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.denovo.03, whole genome shotgun sequence	145410..145847	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNZHM010000043.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.denovo.48, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNZHM010000053.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.guided.41, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNZHM010000055.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.guided.47, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNZHM010000043.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.denovo.48, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNZHM010000055.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.guided.47, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNZHM010000040.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.denovo.43, whole genome shotgun sequence	6582..7487	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNZHM010000054.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.guided.44, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNZHM010000039.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.denovo.42, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNZHM010000056.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.guided.50, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNZHM010000043.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.denovo.48, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNZHM010000055.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.guided.47, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNZHM010000040.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.denovo.43, whole genome shotgun sequence	432..1271	Sulfamethoxazole	U12338	sul1	100	840/840	ABNZHM010000058.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.guided.53, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNZHM010000039.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.denovo.42, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNZHM010000057.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.guided.51, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNZHM010000039.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.denovo.42, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABNZHM010000057.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.guided.51, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNZHM010000035.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325727 SAMN37855980-rid19849023.denovo.37, whole genome shotgun sequence	8402..8652																																																						avrA	ABNZHM010000008.1	174298..175167	99.77	870	0						
GCA_032786825.1_PDT001941846.1_genomic.fna	Salmonella_enterica	0.5209	229.313 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZHN010000002.1 Salmonella enterica strain PNUSAS390700 SAMN37855975-rid19849873.denovo.02, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZHN010000046.1 Salmonella enterica strain PNUSAS390700 SAMN37855975-rid19849873.guided.28, whole genome shotgun sequence	8809..9246	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZHN010000003.1	175009..175877	99.77	870	0						
GCA_032786845.1_PDT001941845.1_genomic.fna	Salmonella_enterica	0.5219	318.359 KB	6	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNZHO010000002.1 Salmonella enterica strain PNUSAS390695 SAMN37855970-rid19848993.denovo.02, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNZHO010000041.1 Salmonella enterica strain PNUSAS390695 SAMN37855970-rid19848993.guided.26, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZHO010000007.1	149515..150383	99.655	870	0						
GCA_032786865.1_PDT001941842.1_genomic.fna	Salmonella_enterica	0.5206	498.007 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZHQ010000001.1 Salmonella enterica strain PNUSAS390701 SAMN37855974-rid19848973.denovo.01, whole genome shotgun sequence	421122..421559	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZHQ010000030.1 Salmonella enterica strain PNUSAS390701 SAMN37855974-rid19848973.guided.23, whole genome shotgun sequence	16068..16505	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZHQ010000015.1 Salmonella enterica strain PNUSAS390701 SAMN37855974-rid19848973.denovo.16, whole genome shotgun sequence	34958..35491																																																						avrA	ABNZHQ010000003.1	394817..395685	99.425	870	0						
GCA_032786885.1_PDT001941841.1_genomic.fna	Salmonella_enterica	0.5205	400.359 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),pXuzhou21	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZHP010000001.1 Salmonella enterica strain PNUSAS390694 SAMN37855971-rid19849853.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZHP010000028.1 Salmonella enterica strain PNUSAS390694 SAMN37855971-rid19849853.guided.19, whole genome shotgun sequence	9051..9488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZHP010000015.1 Salmonella enterica strain PNUSAS390694 SAMN37855971-rid19849853.denovo.15, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABNZHP010000020.1 Salmonella enterica strain PNUSAS390694 SAMN37855971-rid19849853.denovo.23, whole genome shotgun sequence	3380..3641		enterobacteriales	pXuzhou21	99.86	720 / 720	ABNZHP010000016.1 Salmonella enterica strain PNUSAS390694 SAMN37855971-rid19849853.denovo.16, whole genome shotgun sequence	23692..24411																																									avrA	ABNZHP010000002.1	553678..554547	99.54	870	0						
GCA_032786905.1_PDT001941835.1_genomic.fna	Salmonella_enterica	0.5229	228.583 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZHR010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325674 SAMN37855965-rid19848933.denovo.01, whole genome shotgun sequence	791116..791553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZHR010000036.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325674 SAMN37855965-rid19848933.guided.27, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032786925.1_PDT001941832.1_genomic.fna	Salmonella_enterica	0.5216	312.685 KB	6	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZHU010000005.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325726 SAMN37855968-rid19848913.denovo.05, whole genome shotgun sequence	176882..177319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZHU010000042.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325726 SAMN37855968-rid19848913.guided.22, whole genome shotgun sequence	15494..15931	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZHU010000001.1	553573..554442	99.77	870	0						
GCA_032786945.1_PDT001941834.1_genomic.fna	Salmonella_enterica	0.5202	490.114 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZHS010000001.1 Salmonella enterica strain PNUSAS390698 SAMN37855962-rid19849823.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZHS010000029.1 Salmonella enterica strain PNUSAS390698 SAMN37855962-rid19849823.guided.18, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZHS010000019.1 Salmonella enterica strain PNUSAS390698 SAMN37855962-rid19849823.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNZHS010000020.1 Salmonella enterica strain PNUSAS390698 SAMN37855962-rid19849823.denovo.23, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	98.93	374 / 374	ABNZHS010000015.1 Salmonella enterica strain PNUSAS390698 SAMN37855962-rid19849823.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNZHS010000002.1	505491..506360	99.54	870	0						
GCA_032786965.1_PDT001941831.1_genomic.fna	Salmonella_enterica	0.5226	222.602 KB	6	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNZHT010000001.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325725 SAMN37855967-rid19849813.denovo.01, whole genome shotgun sequence	378504..378941	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNZHT010000048.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325725 SAMN37855967-rid19849813.guided.31, whole genome shotgun sequence	16453..16890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZHT010000007.1	145337..146206	99.425	870	0						
GCA_032786985.1_PDT001941830.1_genomic.fna	Salmonella_enterica	0.5224	496.46 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZHV010000001.1 Salmonella enterica strain PNUSAS390699 SAMN37855961-rid19848903.denovo.01, whole genome shotgun sequence	787373..787810	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZHV010000026.1 Salmonella enterica strain PNUSAS390699 SAMN37855961-rid19848903.guided.17, whole genome shotgun sequence	13058..13495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZHV010000002.1	157308..158177	98.966	870	0						
GCA_032787005.1_PDT001941821.1_genomic.fna	Salmonella_enterica	0.5196	100.391 KB	17	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZHW010000003.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325255 SAMN37855955-rid19849783.denovo.03, whole genome shotgun sequence	52900..53337	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZHW010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325255 SAMN37855955-rid19849783.denovo.59, whole genome shotgun sequence	13023..13859	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZHW010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325255 SAMN37855955-rid19849783.denovo.59, whole genome shotgun sequence	13859..14662	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNZHW010000094.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325255 SAMN37855955-rid19849783.guided.63, whole genome shotgun sequence	6150..6587	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZHW010000095.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325255 SAMN37855955-rid19849783.guided.73, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZHW010000095.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325255 SAMN37855955-rid19849783.guided.73, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNZHW010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325255 SAMN37855955-rid19849783.denovo.77, whole genome shotgun sequence	2298..3503	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZHW010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325255 SAMN37855955-rid19849783.guided.78, whole genome shotgun sequence	2329..3534	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNZHW010000072.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325255 SAMN37855955-rid19849783.denovo.76, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNZHW010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325255 SAMN37855955-rid19849783.denovo.59, whole genome shotgun sequence	12139..12400		enterobacteriales	IncFII	96.95	262 / 261	ABNZHW010000095.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325255 SAMN37855955-rid19849783.guided.73, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABNZHW010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325255 SAMN37855955-rid19849783.denovo.62, whole genome shotgun sequence	2153..2525																																		avrA	ABNZHW010000020.1	5379..6248	99.655	870	0						
GCA_032787045.1_PDT001941813.1_genomic.fna	Salmonella_enterica	0.5217	194.62 KB	9	aroC_48,dnaN_108,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	356	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_108	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZHX010000011.1 Salmonella enterica strain PNUSAS392357 SAMN37855899-rid19848793.denovo.11, whole genome shotgun sequence	37916..38353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZHX010000059.1 Salmonella enterica strain PNUSAS392357 SAMN37855899-rid19848793.guided.45, whole genome shotgun sequence	2230..2667	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032787065.1_PDT001941792.1_genomic.fna	Salmonella_enterica	0.5202	680.269 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZHZ010000001.1 Salmonella enterica strain PNUSAS392179 SAMN37855884-rid19848663.denovo.01, whole genome shotgun sequence	658274..658711	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZHZ010000017.1 Salmonella enterica strain PNUSAS392179 SAMN37855884-rid19848663.guided.07, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZHZ010000002.1	576267..577135	99.425	870	0						
GCA_032787085.1_PDT001941710.1_genomic.fna	Salmonella_enterica	0.5223	737.72 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZIA010000001.1 Salmonella enterica strain PNUSAS392344 SAMN37855538-rid19848183.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZIA010000023.1 Salmonella enterica strain PNUSAS392344 SAMN37855538-rid19848183.guided.16, whole genome shotgun sequence	4390..4827	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZIA010000003.1	562079..562949	99.656	871	0						
GCA_032787105.1_PDT001941709.1_genomic.fna	Salmonella_enterica	0.5222	564.902 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZIB010000001.1 Salmonella enterica strain PNUSAS392289 SAMN37855482-rid19849323.denovo.01, whole genome shotgun sequence	486873..487310	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZIB010000023.1 Salmonella enterica strain PNUSAS392289 SAMN37855482-rid19849323.guided.18, whole genome shotgun sequence	3634..4071	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZIB010000002.1	544677..545545	99.425	870	0						
GCA_032787145.1_PDT001941697.1_genomic.fna	Salmonella_enterica	0.5221	699.691 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZIG010000001.1 Salmonella enterica strain PNUSAS392282 SAMN37855488-rid19849283.denovo.01, whole genome shotgun sequence	510505..510942	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZIG010000019.1 Salmonella enterica strain PNUSAS392282 SAMN37855488-rid19849283.guided.16, whole genome shotgun sequence	6910..7347	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZIG010000002.1	544607..545475	99.425	870	0						
GCA_032787165.1_PDT001941703.1_genomic.fna	Salmonella_enterica	0.5206	406.451 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZIE010000001.1 Salmonella enterica strain PNUSAS392293 SAMN37855486-rid19848133.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZIE010000020.1 Salmonella enterica strain PNUSAS392293 SAMN37855486-rid19848133.denovo.20, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABNZIE010000021.1 Salmonella enterica strain PNUSAS392293 SAMN37855486-rid19848133.denovo.21, whole genome shotgun sequence	3414..3675		enterobacteriales	IncX1	98.93	374 / 374	ABNZIE010000016.1 Salmonella enterica strain PNUSAS392293 SAMN37855486-rid19848133.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNZIE010000002.1	553684..554553	99.54	870	0						
GCA_032787185.1_PDT001941706.1_genomic.fna	Salmonella_enterica	0.5217	257.84 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZID010000002.1 Salmonella enterica strain PNUSAS392284 SAMN37855485-rid19848153.denovo.02, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZID010000044.1 Salmonella enterica strain PNUSAS392284 SAMN37855485-rid19848153.guided.30, whole genome shotgun sequence	12450..12887	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZID010000017.1 Salmonella enterica strain PNUSAS392284 SAMN37855485-rid19848153.denovo.17, whole genome shotgun sequence	14681..15323	enterobacteriales	IncFII(S)	100	262 / 262	ABNZID010000017.1 Salmonella enterica strain PNUSAS392284 SAMN37855485-rid19848153.denovo.17, whole genome shotgun sequence	30408..30669		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNZID010000020.1 Salmonella enterica strain PNUSAS392284 SAMN37855485-rid19848153.denovo.20, whole genome shotgun sequence	69501..69642																																									avrA	ABNZID010000001.1	446687..447555	100	869	0						
GCA_032787225.1_PDT001941698.1_genomic.fna	Salmonella_enterica	0.5223	699.691 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZIF010000001.1 Salmonella enterica strain PNUSAS392272 SAMN37855501-rid19848103.denovo.01, whole genome shotgun sequence	510505..510942	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZIF010000021.1 Salmonella enterica strain PNUSAS392272 SAMN37855501-rid19848103.guided.17, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZIF010000002.1	544607..545475	99.425	870	0						
GCA_032787245.1_PDT001941589.1_genomic.fna	Salmonella_enterica	0.5142	405.51 KB	5	aroC_33,dnaN_26,hemD_30,hisD_144,purE_464,sucA_87,thrA_134	1848	61:z52:z53	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_144	purE	100	100	purE_464	sucA	100	100	sucA_87	thrA	100	100	thrA_134	61	z52	z53	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:z52:z53		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZII010000002.1 Salmonella enterica strain PNUSAS391325 SAMN37855281-rid19846633.denovo.02, whole genome shotgun sequence	106360..106797	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZII010000038.1 Salmonella enterica strain PNUSAS391325 SAMN37855281-rid19846633.guided.24, whole genome shotgun sequence	9257..9694	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNZII010000025.1 Salmonella enterica strain PNUSAS391325 SAMN37855281-rid19846633.denovo.30, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNZII010000041.1 Salmonella enterica strain PNUSAS391325 SAMN37855281-rid19846633.guided.29, whole genome shotgun sequence	4227..4871	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNZII010000025.1 Salmonella enterica strain PNUSAS391325 SAMN37855281-rid19846633.denovo.30, whole genome shotgun sequence	1519..1649	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNZII010000041.1 Salmonella enterica strain PNUSAS391325 SAMN37855281-rid19846633.guided.29, whole genome shotgun sequence	3571..3701																																																avrA	ABNZII010000001.1	194582..195451	96.437	870	0						
GCA_032787325.1_PDT001785750.1_genomic.fna	Salmonella_enterica	0.5215	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZIM010000001.1 Salmonella enterica strain PNUSAS356953 SAMN35801475-rid18522423.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZIM010000031.1 Salmonella enterica strain PNUSAS356953 SAMN35801475-rid18522423.guided.22, whole genome shotgun sequence	5660..6097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZIM010000016.1 Salmonella enterica strain PNUSAS356953 SAMN35801475-rid18522423.denovo.16, whole genome shotgun sequence	48648..49290	enterobacteriales	IncFII(S)	100	262 / 262	ABNZIM010000016.1 Salmonella enterica strain PNUSAS356953 SAMN35801475-rid18522423.denovo.16, whole genome shotgun sequence	4395..4656																																																avrA	ABNZIM010000002.1	553076..553945	99.54	870	0						
GCA_032787345.1_PDT001785749.1_genomic.fna	Salmonella_enterica	0.52	226.146 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZIO010000004.1 Salmonella enterica strain PNUSAS356913 SAMN35801478-rid18528773.denovo.04, whole genome shotgun sequence	37870..38307	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZIO010000046.1 Salmonella enterica strain PNUSAS356913 SAMN35801478-rid18528773.guided.38, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNZIO010000024.1 Salmonella enterica strain PNUSAS356913 SAMN35801478-rid18528773.denovo.24, whole genome shotgun sequence	62748..63390																																																																	
GCA_032787425.1_PDT001785745.1_genomic.fna	Salmonella_enterica	0.5229	397.544 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNZIT010000001.1 Salmonella enterica strain PNUSAS356895 SAMN35801434-rid18520983.denovo.01, whole genome shotgun sequence	667228..667665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNZIT010000027.1 Salmonella enterica strain PNUSAS356895 SAMN35801434-rid18520983.guided.20, whole genome shotgun sequence	8075..8512	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZIT010000002.1	510251..511120	99.31	870	0						
GCA_032787465.1_PDT001785742.1_genomic.fna	Salmonella_enterica	0.5209	314.751 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZIU010000001.1 Salmonella enterica strain PNUSAS356894 SAMN35801433-rid18525573.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZIU010000044.1 Salmonella enterica strain PNUSAS356894 SAMN35801433-rid18525573.guided.25, whole genome shotgun sequence	7118..7555	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZIU010000012.1	93870..94740	99.196	871	0						
GCA_032787505.1_PDT001785741.1_genomic.fna	Salmonella_enterica	0.5212	406.325 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZIW010000001.1 Salmonella enterica strain PNUSAS356898 SAMN35801430-rid18517033.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZIW010000025.1 Salmonella enterica strain PNUSAS356898 SAMN35801430-rid18517033.guided.20, whole genome shotgun sequence	5217..5654	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNZIW010000018.1 Salmonella enterica strain PNUSAS356898 SAMN35801430-rid18517033.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNZIW010000015.1 Salmonella enterica strain PNUSAS356898 SAMN35801430-rid18517033.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNZIW010000002.1	553499..554368	99.54	870	0						
GCA_032787565.1_PDT001785737.1_genomic.fna	Salmonella_enterica	0.5214	489.846 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZIY010000001.1 Salmonella enterica strain PNUSAS356893 SAMN35801432-rid18522373.denovo.01, whole genome shotgun sequence	815077..815514	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZIY010000022.1 Salmonella enterica strain PNUSAS356893 SAMN35801432-rid18522373.guided.18, whole genome shotgun sequence	10557..10994	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZIY010000002.1	552788..553657	99.54	870	0						
GCA_032787605.1_PDT001785736.1_genomic.fna	Salmonella_enterica	0.5204	321.977 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZJA010000001.1 Salmonella enterica strain PNUSAS356897 SAMN35801429-rid18517993.denovo.01, whole genome shotgun sequence	774421..774858	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZJA010000033.1 Salmonella enterica strain PNUSAS356897 SAMN35801429-rid18517993.guided.22, whole genome shotgun sequence	20578..21015	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZJA010000021.1 Salmonella enterica strain PNUSAS356897 SAMN35801429-rid18517993.denovo.23, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABNZJA010000023.1 Salmonella enterica strain PNUSAS356897 SAMN35801429-rid18517993.denovo.26, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.93	374 / 374	ABNZJA010000017.1 Salmonella enterica strain PNUSAS356897 SAMN35801429-rid18517993.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABNZJA010000002.1	553456..554325	99.54	870	0						
GCA_032787665.1_PDT001785732.1_genomic.fna	Salmonella_enterica	0.5217	207.445 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZJD010000002.1 Salmonella enterica strain PNUSAS356892 SAMN35801431-rid18525563.denovo.02, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZJD010000046.1 Salmonella enterica strain PNUSAS356892 SAMN35801431-rid18525563.guided.34, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZJD010000003.1	208425..209293	99.77	870	0						
GCA_032787705.1_PDT001785730.1_genomic.fna	Salmonella_enterica	0.5211	455.601 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZJH010000005.1 Salmonella enterica strain PNUSAS356934 SAMN35801002-rid18527173.denovo.05, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZJH010000027.1 Salmonella enterica strain PNUSAS356934 SAMN35801002-rid18527173.guided.19, whole genome shotgun sequence	19840..20277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZJH010000017.1 Salmonella enterica strain PNUSAS356934 SAMN35801002-rid18527173.denovo.17, whole genome shotgun sequence	48513..49155	enterobacteriales	IncFII(S)	100	262 / 262	ABNZJH010000017.1 Salmonella enterica strain PNUSAS356934 SAMN35801002-rid18527173.denovo.17, whole genome shotgun sequence	4260..4521																																																avrA	ABNZJH010000001.1	585262..586131	99.54	870	0						
GCA_032787945.1_PDT001785716.1_genomic.fna	Salmonella_enterica	0.5217	354.491 KB	5	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZJT010000003.1 Salmonella enterica strain 23CT05GT03-S1 SAMN35800851-rid18519553.denovo.03, whole genome shotgun sequence	252456..252893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZJT010000026.1 Salmonella enterica strain 23CT05GT03-S1 SAMN35800851-rid18519553.denovo.29, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNZJT010000026.1 Salmonella enterica strain 23CT05GT03-S1 SAMN35800851-rid18519553.denovo.29, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNZJT010000026.1 Salmonella enterica strain 23CT05GT03-S1 SAMN35800851-rid18519553.denovo.29, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNZJT010000026.1 Salmonella enterica strain 23CT05GT03-S1 SAMN35800851-rid18519553.denovo.29, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNZJT010000026.1 Salmonella enterica strain 23CT05GT03-S1 SAMN35800851-rid18519553.denovo.29, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNZJT010000039.1 Salmonella enterica strain 23CT05GT03-S1 SAMN35800851-rid18519553.guided.25, whole genome shotgun sequence	2676..3113	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZJT010000042.1 Salmonella enterica strain 23CT05GT03-S1 SAMN35800851-rid18519553.guided.34, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNZJT010000042.1 Salmonella enterica strain 23CT05GT03-S1 SAMN35800851-rid18519553.guided.34, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNZJT010000042.1 Salmonella enterica strain 23CT05GT03-S1 SAMN35800851-rid18519553.guided.34, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNZJT010000042.1 Salmonella enterica strain 23CT05GT03-S1 SAMN35800851-rid18519553.guided.34, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNZJT010000042.1 Salmonella enterica strain 23CT05GT03-S1 SAMN35800851-rid18519553.guided.34, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNZJT010000028.1 Salmonella enterica strain 23CT05GT03-S1 SAMN35800851-rid18519553.denovo.32, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZJT010000041.1 Salmonella enterica strain 23CT05GT03-S1 SAMN35800851-rid18519553.guided.31, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZJT010000007.1	39480..40349	99.655	870	0						
GCA_032788025.1_PDT001785715.1_genomic.fna	Salmonella_enterica	0.5211	194.157 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZJV010000001.1 Salmonella enterica strain 23CT05CB04-S1 SAMN35800849-rid18523933.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNZJV010000030.1 Salmonella enterica strain 23CT05CB04-S1 SAMN35800849-rid18523933.denovo.32, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZJV010000030.1 Salmonella enterica strain 23CT05CB04-S1 SAMN35800849-rid18523933.denovo.32, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aac(3)-IV	100	777/777	ABNZJV010000046.1 Salmonella enterica strain 23CT05CB04-S1 SAMN35800849-rid18523933.denovo.51, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNZJV010000054.1 Salmonella enterica strain 23CT05CB04-S1 SAMN35800849-rid18523933.guided.22, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNZJV010000058.1 Salmonella enterica strain 23CT05CB04-S1 SAMN35800849-rid18523933.guided.44, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZJV010000058.1 Salmonella enterica strain 23CT05CB04-S1 SAMN35800849-rid18523933.guided.44, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(3)-IV	100	777/777	ABNZJV010000059.1 Salmonella enterica strain 23CT05CB04-S1 SAMN35800849-rid18523933.guided.54, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNZJV010000030.1 Salmonella enterica strain 23CT05CB04-S1 SAMN35800849-rid18523933.denovo.32, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABNZJV010000058.1 Salmonella enterica strain 23CT05CB04-S1 SAMN35800849-rid18523933.guided.44, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNZJV010000030.1 Salmonella enterica strain 23CT05CB04-S1 SAMN35800849-rid18523933.denovo.32, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZJV010000056.1 Salmonella enterica strain 23CT05CB04-S1 SAMN35800849-rid18523933.guided.36, whole genome shotgun sequence	7188..8387	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNZJV010000035.1 Salmonella enterica strain 23CT05CB04-S1 SAMN35800849-rid18523933.denovo.38, whole genome shotgun sequence	9109..9668																																																						avrA	ABNZJV010000006.1	39349..40218	99.655	870	0						
GCA_032788045.1_PDT001785714.1_genomic.fna	Salmonella_enterica	0.5217	245.493 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZJW010000002.1 Salmonella enterica strain 23CT05CG01-S1 SAMN35800853-rid18530243.denovo.02, whole genome shotgun sequence	573974..574411	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNZJW010000014.1 Salmonella enterica strain 23CT05CG01-S1 SAMN35800853-rid18530243.denovo.14, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZJW010000014.1 Salmonella enterica strain 23CT05CG01-S1 SAMN35800853-rid18530243.denovo.14, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNZJW010000034.1 Salmonella enterica strain 23CT05CG01-S1 SAMN35800853-rid18530243.denovo.39, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNZJW010000034.1 Salmonella enterica strain 23CT05CG01-S1 SAMN35800853-rid18530243.denovo.39, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABNZJW010000052.1 Salmonella enterica strain 23CT05CG01-S1 SAMN35800853-rid18530243.guided.27, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZJW010000052.1 Salmonella enterica strain 23CT05CG01-S1 SAMN35800853-rid18530243.guided.27, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNZJW010000056.1 Salmonella enterica strain 23CT05CG01-S1 SAMN35800853-rid18530243.guided.37, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNZJW010000056.1 Salmonella enterica strain 23CT05CG01-S1 SAMN35800853-rid18530243.guided.37, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABNZJW010000014.1 Salmonella enterica strain 23CT05CG01-S1 SAMN35800853-rid18530243.denovo.14, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNZJW010000052.1 Salmonella enterica strain 23CT05CG01-S1 SAMN35800853-rid18530243.guided.27, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNZJW010000014.1 Salmonella enterica strain 23CT05CG01-S1 SAMN35800853-rid18530243.denovo.14, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZJW010000052.1 Salmonella enterica strain 23CT05CG01-S1 SAMN35800853-rid18530243.guided.27, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																													gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNZJW010000029.1 Salmonella enterica strain 23CT05CG01-S1 SAMN35800853-rid18530243.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABNZJW010000004.1	39430..40299	99.655	870	0						
GCA_032788065.1_PDT001785712.1_genomic.fna	Salmonella_enterica	0.5208	207.937 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		4	Col(pHAD28),Col440I,ColpVC,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZJY010000001.1 Salmonella enterica strain PNUSAS356873 SAMN35800716-rid18525533.denovo.01, whole genome shotgun sequence	145349..145786	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZJY010000055.1 Salmonella enterica strain PNUSAS356873 SAMN35800716-rid18525533.guided.22, whole genome shotgun sequence	31468..31905	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNZJY010000013.1 Salmonella enterica strain PNUSAS356873 SAMN35800716-rid18525533.denovo.13, whole genome shotgun sequence	7368..8513	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNZJY010000057.1 Salmonella enterica strain PNUSAS356873 SAMN35800716-rid18525533.guided.38, whole genome shotgun sequence	19066..20211	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNZJY010000035.1 Salmonella enterica strain PNUSAS356873 SAMN35800716-rid18525533.denovo.37, whole genome shotgun sequence	23474..24289	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZJY010000059.1 Salmonella enterica strain PNUSAS356873 SAMN35800716-rid18525533.guided.48, whole genome shotgun sequence	697..1512	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNZJY010000035.1 Salmonella enterica strain PNUSAS356873 SAMN35800716-rid18525533.denovo.37, whole genome shotgun sequence	26466..27665	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZJY010000059.1 Salmonella enterica strain PNUSAS356873 SAMN35800716-rid18525533.guided.48, whole genome shotgun sequence	3689..4888	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABNZJY010000045.1 Salmonella enterica strain PNUSAS356873 SAMN35800716-rid18525533.denovo.50, whole genome shotgun sequence	371..501	enterobacteriales	Col440I	93.81	113 / 114	ABNZJY010000046.1 Salmonella enterica strain PNUSAS356873 SAMN35800716-rid18525533.denovo.51, whole genome shotgun sequence	2528..2639		enterobacteriales	ColpVC	98.96	193 / 193	ABNZJY010000050.1 Salmonella enterica strain PNUSAS356873 SAMN35800716-rid18525533.denovo.55, whole genome shotgun sequence	805..997		enterobacteriales	IncC	100	417 / 417	ABNZJY010000018.1 Salmonella enterica strain PNUSAS356873 SAMN35800716-rid18525533.denovo.18, whole genome shotgun sequence	69105..69521																																		avrA	ABNZJY010000014.1	95120..95989	99.885	870	0						
GCA_032788085.1_PDT001785713.1_genomic.fna	Salmonella_enterica	0.5226	409.253 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZJX010000001.1 Salmonella enterica strain PNUSAS356874 SAMN35800718-rid18520923.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZJX010000029.1 Salmonella enterica strain PNUSAS356874 SAMN35800718-rid18520923.guided.18, whole genome shotgun sequence	9797..10234	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZJX010000002.1	94795..95664	99.655	870	0						
GCA_032788105.1_PDT001785711.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZJZ010000001.1 Salmonella enterica strain PNUSAS356878 SAMN35800712-rid18517963.denovo.01, whole genome shotgun sequence	771821..772258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZJZ010000026.1 Salmonella enterica strain PNUSAS356878 SAMN35800712-rid18517963.guided.15, whole genome shotgun sequence	43570..44007	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABNZJZ010000023.1 Salmonella enterica strain PNUSAS356878 SAMN35800712-rid18517963.denovo.26, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZJZ010000015.1 Salmonella enterica strain PNUSAS356878 SAMN35800712-rid18517963.denovo.16, whole genome shotgun sequence	49285..49927		enterobacteriales	IncFII(S)	100	262 / 262	ABNZJZ010000015.1 Salmonella enterica strain PNUSAS356878 SAMN35800712-rid18517963.denovo.16, whole genome shotgun sequence	5032..5293																																									avrA	ABNZJZ010000002.1	553189..554058	99.54	870	0						
GCA_032788125.1_PDT001785710.1_genomic.fna	Salmonella_enterica	0.521	480.933 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZKA010000001.1 Salmonella enterica strain PNUSAS356877 SAMN35800717-rid18525523.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZKA010000026.1 Salmonella enterica strain PNUSAS356877 SAMN35800717-rid18525523.guided.18, whole genome shotgun sequence	9243..9680	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZKA010000016.1 Salmonella enterica strain PNUSAS356877 SAMN35800717-rid18525523.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNZKA010000016.1 Salmonella enterica strain PNUSAS356877 SAMN35800717-rid18525523.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNZKA010000002.1	553635..554504	99.54	870	0						
GCA_032788145.1_PDT001785709.1_genomic.fna	Salmonella_enterica	0.5206	406.451 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZKB010000001.1 Salmonella enterica strain PNUSAS356876 SAMN35800714-rid18528743.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZKB010000030.1 Salmonella enterica strain PNUSAS356876 SAMN35800714-rid18528743.guided.19, whole genome shotgun sequence	26215..26652	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZKB010000018.1 Salmonella enterica strain PNUSAS356876 SAMN35800714-rid18528743.denovo.18, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNZKB010000018.1 Salmonella enterica strain PNUSAS356876 SAMN35800714-rid18528743.denovo.18, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNZKB010000019.1 Salmonella enterica strain PNUSAS356876 SAMN35800714-rid18528743.denovo.20, whole genome shotgun sequence	32011..32384																																									avrA	ABNZKB010000015.1	28834..29703	99.54	870	0						
GCA_032788165.1_PDT001785707.1_genomic.fna	Salmonella_enterica	0.5201	337.478 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	2	Col440I,IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZKF010000001.1 Salmonella enterica strain PNUSAS356872 SAMN35800713-rid18523923.denovo.01, whole genome shotgun sequence	517922..518359	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZKF010000040.1 Salmonella enterica strain PNUSAS356872 SAMN35800713-rid18523923.guided.24, whole genome shotgun sequence	2016..2453	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABNZKF010000014.1 Salmonella enterica strain PNUSAS356872 SAMN35800713-rid18523923.denovo.14, whole genome shotgun sequence	62162..63367	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZKF010000039.1 Salmonella enterica strain PNUSAS356872 SAMN35800713-rid18523923.guided.22, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	ABNZKF010000028.1 Salmonella enterica strain PNUSAS356872 SAMN35800713-rid18523923.denovo.32, whole genome shotgun sequence	1566..1675	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNZKF010000014.1 Salmonella enterica strain PNUSAS356872 SAMN35800713-rid18523923.denovo.14, whole genome shotgun sequence	69753..69894		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNZKF010000039.1 Salmonella enterica strain PNUSAS356872 SAMN35800713-rid18523923.guided.22, whole genome shotgun sequence	3169..3310																																									avrA	ABNZKF010000002.1	93999..94868	98.966	870	0						
GCA_032788205.1_PDT001785708.1_genomic.fna	Salmonella_enterica	0.5211	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	10	aac(6')-Iaa,aph(3')-IIa,aac(3)-IId,aph(6)-Id,aph(3'')-Ib,aadA2,aac(6')-Iaa,aph(3')-IIa,aac(3)-IId,aph(6)-Id,aph(3'')-Ib,aadA2,blaTEM-1B,blaTEM-1B,floR,floR,sul2,sul2,tet(B),tet(B)	1	gyrA_p.S83F	3	IncFIB(AP001918),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZKD010000001.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.denovo.01, whole genome shotgun sequence	482841..483278	Amikacin, Tobramycin	NC_003197	aph(3')-IIa	100	795/795	ABNZKD010000030.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.denovo.32, whole genome shotgun sequence	7675..8469	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	aac(3)-IId	99.88	861/861	ABNZKD010000033.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.denovo.37, whole genome shotgun sequence	12105..12965	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(6)-Id	100	837/837	ABNZKD010000046.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.denovo.54, whole genome shotgun sequence	794..1630	Streptomycin	M28829	aph(3'')-Ib	100	794/804	ABNZKD010000046.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.denovo.54, whole genome shotgun sequence	1..794	Streptomycin	AF321551	aadA2	100	792/792	ABNZKD010000048.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.denovo.57, whole genome shotgun sequence	308..1099	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	100	438/438	ABNZKD010000064.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.guided.19, whole genome shotgun sequence	14362..14799	Amikacin, Tobramycin	NC_003197	aph(3')-IIa	100	795/795	ABNZKD010000066.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.guided.34, whole genome shotgun sequence	7716..8510	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	aac(3)-IId	99.88	861/861	ABNZKD010000068.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.guided.41, whole genome shotgun sequence	71..931	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(6)-Id	100	837/837	ABNZKD010000070.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.guided.43, whole genome shotgun sequence	4939..5775	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZKD010000070.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.guided.43, whole genome shotgun sequence	4136..4939	Streptomycin	AF321551	aadA2	100	792/792	ABNZKD010000072.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.guided.56, whole genome shotgun sequence	489..1280	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABNZKD010000033.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.denovo.37, whole genome shotgun sequence	6273..7133	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZKD010000068.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.guided.41, whole genome shotgun sequence	5903..6763	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.11	1214/1215	ABNZKD010000030.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.denovo.32, whole genome shotgun sequence	2072..3285	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABNZKD010000066.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.guided.34, whole genome shotgun sequence	2113..3326	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNZKD010000041.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.denovo.49, whole genome shotgun sequence	61..876	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNZKD010000071.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.guided.48, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNZKD010000032.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.denovo.36, whole genome shotgun sequence	12336..13541	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZKD010000069.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.guided.42, whole genome shotgun sequence	5291..6496	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																												gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNZKD010000037.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.denovo.44, whole genome shotgun sequence	2174..2855	enterobacteriales	IncFIB(S)	100	643 / 643	ABNZKD010000023.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.denovo.24, whole genome shotgun sequence	17894..18536		enterobacteriales	IncFII(S)	100	262 / 262	ABNZKD010000023.1 Salmonella enterica strain PNUSAS356875 SAMN35800715-rid18527143.denovo.24, whole genome shotgun sequence	33621..33882																																									avrA	ABNZKD010000005.1	143228..144097	99.885	870	0						
GCA_032788245.1_PDT001785703.1_genomic.fna	Salmonella_enterica	0.5206	439.616 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZKH010000001.1 Salmonella enterica strain PNUSAS356818 SAMN35798654-rid18522363.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZKH010000031.1 Salmonella enterica strain PNUSAS356818 SAMN35798654-rid18522363.guided.22, whole genome shotgun sequence	7039..7476	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZKH010000020.1 Salmonella enterica strain PNUSAS356818 SAMN35798654-rid18522363.denovo.20, whole genome shotgun sequence	6808..7450	enterobacteriales	IncFII(S)	100	262 / 262	ABNZKH010000022.1 Salmonella enterica strain PNUSAS356818 SAMN35798654-rid18522363.denovo.23, whole genome shotgun sequence	3390..3651		enterobacteriales	IncX1	98.93	374 / 374	ABNZKH010000016.1 Salmonella enterica strain PNUSAS356818 SAMN35798654-rid18522363.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABNZKH010000002.1	553480..554349	99.54	870	0						
GCA_032788265.1_PDT001785704.1_genomic.fna	Salmonella_enterica	0.5206	367.816 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZKG010000001.1 Salmonella enterica strain PNUSAS356820 SAMN35798651-rid18531493.denovo.01, whole genome shotgun sequence	406519..406956	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZKG010000021.1 Salmonella enterica strain PNUSAS356820 SAMN35798651-rid18531493.denovo.21, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNZKG010000023.1 Salmonella enterica strain PNUSAS356820 SAMN35798651-rid18531493.denovo.24, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.93	374 / 374	ABNZKG010000017.1 Salmonella enterica strain PNUSAS356820 SAMN35798651-rid18531493.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABNZKG010000002.1	553682..554551	99.54	870	0						
GCA_032788305.1_PDT001785699.1_genomic.fna	Salmonella_enterica	0.5232	297.107 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZKJ010000004.1 Salmonella enterica strain PNUSAS356832 isolate TXACF2300957 SAMN35800294-rid18528733.denovo.04, whole genome shotgun sequence	228414..228851	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.36	366/438	ABNZKJ010000033.1 Salmonella enterica strain PNUSAS356832 isolate TXACF2300957 SAMN35800294-rid18528733.guided.29, whole genome shotgun sequence	1..366	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032788325.1_PDT001785698.1_genomic.fna	Salmonella_enterica	0.5212	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZKK010000001.1 Salmonella enterica strain PNUSAS356827 SAMN35798657-rid18527133.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZKK010000047.1 Salmonella enterica strain PNUSAS356827 SAMN35798657-rid18527133.guided.34, whole genome shotgun sequence	12..449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNZKK010000030.1 Salmonella enterica strain PNUSAS356827 SAMN35798657-rid18527133.denovo.30, whole genome shotgun sequence	9109..9668																																																						avrA	ABNZKK010000003.1	149828..150697	99.655	870	0						
GCA_032788345.1_PDT001785696.1_genomic.fna	Salmonella_enterica	0.5212	270.984 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZKL010000001.1 Salmonella enterica strain PNUSAS356822 SAMN35798655-rid18519533.denovo.01, whole genome shotgun sequence	581408..581845	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZKL010000040.1 Salmonella enterica strain PNUSAS356822 SAMN35798655-rid18519533.denovo.43, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZKL010000040.1 Salmonella enterica strain PNUSAS356822 SAMN35798655-rid18519533.denovo.43, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNZKL010000054.1 Salmonella enterica strain PNUSAS356822 SAMN35798655-rid18519533.guided.37, whole genome shotgun sequence	3422..3859	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZKL010000055.1 Salmonella enterica strain PNUSAS356822 SAMN35798655-rid18519533.guided.41, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZKL010000055.1 Salmonella enterica strain PNUSAS356822 SAMN35798655-rid18519533.guided.41, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNZKL010000044.1 Salmonella enterica strain PNUSAS356822 SAMN35798655-rid18519533.denovo.49, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZKL010000057.1 Salmonella enterica strain PNUSAS356822 SAMN35798655-rid18519533.guided.48, whole genome shotgun sequence	343..1203	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNZKL010000040.1 Salmonella enterica strain PNUSAS356822 SAMN35798655-rid18519533.denovo.43, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNZKL010000055.1 Salmonella enterica strain PNUSAS356822 SAMN35798655-rid18519533.guided.41, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNZKL010000033.1 Salmonella enterica strain PNUSAS356822 SAMN35798655-rid18519533.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZKL010000053.1 Salmonella enterica strain PNUSAS356822 SAMN35798655-rid18519533.guided.34, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col156	97.37	152 / 154	ABNZKL010000037.1 Salmonella enterica strain PNUSAS356822 SAMN35798655-rid18519533.denovo.39, whole genome shotgun sequence	643..794																																																						avrA	ABNZKL010000002.1	540332..541201	99.885	870	0						
GCA_032788365.1_PDT001785695.1_genomic.fna	Salmonella_enterica	0.5177	278.704 KB	7	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNZKN010000002.1 Salmonella enterica strain PNUSAS356830 SAMN35798649-rid18523893.denovo.02, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNZKN010000069.1 Salmonella enterica strain PNUSAS356830 SAMN35798649-rid18523893.guided.42, whole genome shotgun sequence	4407..4844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNZKN010000010.1 Salmonella enterica strain PNUSAS356830 SAMN35798649-rid18523893.denovo.10, whole genome shotgun sequence	167611..168253	enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABNZKN010000034.1 Salmonella enterica strain PNUSAS356830 SAMN35798649-rid18523893.denovo.35, whole genome shotgun sequence	15939..16531																																																											
GCA_032788385.1_PDT001785694.1_genomic.fna	Salmonella_enterica	0.5213	327.166 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZKM010000001.1 Salmonella enterica strain PNUSAS356831 SAMN35798652-rid18530233.denovo.01, whole genome shotgun sequence	293245..293682	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZKM010000028.1 Salmonella enterica strain PNUSAS356831 SAMN35798652-rid18530233.guided.24, whole genome shotgun sequence	193..630	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZKM010000019.1 Salmonella enterica strain PNUSAS356831 SAMN35798652-rid18530233.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNZKM010000005.1 Salmonella enterica strain PNUSAS356831 SAMN35798652-rid18530233.denovo.05, whole genome shotgun sequence	3392..3653																																																avrA	ABNZKM010000002.1	552774..553643	99.54	870	0						
GCA_032788405.1_PDT001785693.1_genomic.fna	Salmonella_enterica	0.5215	477.515 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZKO010000001.1 Salmonella enterica strain PNUSAS356824 SAMN35798646-rid18522353.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZKO010000026.1 Salmonella enterica strain PNUSAS356824 SAMN35798646-rid18522353.guided.22, whole genome shotgun sequence	1212..1649	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZKO010000016.1 Salmonella enterica strain PNUSAS356824 SAMN35798646-rid18522353.denovo.16, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABNZKO010000017.1 Salmonella enterica strain PNUSAS356824 SAMN35798646-rid18522353.denovo.19, whole genome shotgun sequence	3402..3663																																																avrA	ABNZKO010000002.1	553636..554505	99.54	870	0						
GCA_032788425.1_PDT001785692.1_genomic.fna	Salmonella_enterica	0.5206	304.306 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZKP010000001.1 Salmonella enterica strain PNUSAS356826 SAMN35798645-rid18531483.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZKP010000033.1 Salmonella enterica strain PNUSAS356826 SAMN35798645-rid18531483.guided.28, whole genome shotgun sequence	74..511	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZKP010000022.1 Salmonella enterica strain PNUSAS356826 SAMN35798645-rid18531483.denovo.22, whole genome shotgun sequence	6756..7398	enterobacteriales	IncFII(S)	100	262 / 262	ABNZKP010000023.1 Salmonella enterica strain PNUSAS356826 SAMN35798645-rid18531483.denovo.23, whole genome shotgun sequence	3394..3655		enterobacteriales	IncX1	98.93	374 / 374	ABNZKP010000017.1 Salmonella enterica strain PNUSAS356826 SAMN35798645-rid18531483.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABNZKP010000006.1	175109..175978	99.54	870	0						
GCA_032788445.1_PDT001785690.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZKR010000001.1 Salmonella enterica strain PNUSAS356828 SAMN35798644-rid18525493.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZKR010000026.1 Salmonella enterica strain PNUSAS356828 SAMN35798644-rid18525493.guided.20, whole genome shotgun sequence	4632..5069	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZKR010000017.1 Salmonella enterica strain PNUSAS356828 SAMN35798644-rid18525493.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNZKR010000018.1 Salmonella enterica strain PNUSAS356828 SAMN35798644-rid18525493.denovo.19, whole genome shotgun sequence	3395..3656																																																avrA	ABNZKR010000002.1	553636..554505	99.54	870	0						
GCA_032788465.1_PDT001785688.1_genomic.fna	Salmonella_enterica	0.522	273.214 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZKU010000017.1 Salmonella enterica strain PNUSAS356829 SAMN35798647-rid18531473.denovo.17, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZKU010000056.1 Salmonella enterica strain PNUSAS356829 SAMN35798647-rid18531473.guided.44, whole genome shotgun sequence	475..912	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZKU010000022.1 Salmonella enterica strain PNUSAS356829 SAMN35798647-rid18531473.denovo.22, whole genome shotgun sequence	44702..45344	enterobacteriales	IncFII(S)	100	262 / 262	ABNZKU010000022.1 Salmonella enterica strain PNUSAS356829 SAMN35798647-rid18531473.denovo.22, whole genome shotgun sequence	29356..29617																																																avrA	ABNZKU010000004.1	174651..175519	100	869	0						
GCA_032788485.1_PDT001785691.1_genomic.fna	Salmonella_enterica	0.5227	239.494 KB	6	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNZKQ010000001.1 Salmonella enterica strain PNUSAS356821 SAMN35798653-rid18517943.denovo.01, whole genome shotgun sequence	402663..403100	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNZKQ010000042.1 Salmonella enterica strain PNUSAS356821 SAMN35798653-rid18517943.guided.27, whole genome shotgun sequence	4575..5012	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032788505.1_PDT001785687.1_genomic.fna	Salmonella_enterica	0.5213	400.789 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87G	3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZKT010000001.1 Salmonella enterica strain PNUSAS356819 SAMN35798650-rid18528713.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZKT010000029.1 Salmonella enterica strain PNUSAS356819 SAMN35798650-rid18528713.guided.23, whole genome shotgun sequence	4073..4510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNZKT010000024.1 Salmonella enterica strain PNUSAS356819 SAMN35798650-rid18528713.denovo.27, whole genome shotgun sequence	368..498	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZKT010000019.1 Salmonella enterica strain PNUSAS356819 SAMN35798650-rid18528713.denovo.19, whole genome shotgun sequence	6820..7462		enterobacteriales	IncFII(S)	100	262 / 262	ABNZKT010000020.1 Salmonella enterica strain PNUSAS356819 SAMN35798650-rid18528713.denovo.20, whole genome shotgun sequence	3402..3663																																									avrA	ABNZKT010000002.1	553024..553893	99.54	870	0						
GCA_032788525.1_PDT001785686.1_genomic.fna	Salmonella_enterica	0.5201	149.813 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	10	aac(6')-Iaa,aadA24,aph(6)-Id,aph(3'')-Ib,aadA24,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul2,sul2,sul2,tet(M),tet(B),tet(M),tet(B),tet(B),dfrA12,dfrA12	0		5	Col(pHAD28),ColpVC,IncFIB(AP001918),IncFIC(FII),IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZKV010000001.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.denovo.01, whole genome shotgun sequence	458524..458961	Amikacin, Tobramycin	NC_003197	aadA24	99.36	780/780	ABNZKV010000044.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.denovo.44, whole genome shotgun sequence	4690..5469	Spectinomycin, Streptomycin	DQ677333	aph(6)-Id	100	837/837	ABNZKV010000065.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.denovo.74, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZKV010000065.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.denovo.74, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aadA24	99.36	780/780	ABNZKV010000081.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.guided.46, whole genome shotgun sequence	4731..5510	Spectinomycin, Streptomycin	DQ677333	aac(6')-Iaa	100	438/438	ABNZKV010000082.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.guided.47, whole genome shotgun sequence	5643..6080	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZKV010000089.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.guided.73, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZKV010000089.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.guided.73, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNZKV010000063.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.denovo.70, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZKV010000087.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.guided.68, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNZKV010000057.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.denovo.61, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNZKV010000088.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.guided.71, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABNZKV010000090.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.guided.81, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNZKV010000091.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.guided.82, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNZKV010000092.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.guided.83, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZKV010000093.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.guided.84, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(M)	96.2	1920/1920	ABNZKV010000044.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.denovo.44, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNZKV010000050.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.denovo.52, whole genome shotgun sequence	691..1896	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.2	1920/1920	ABNZKV010000081.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.guided.46, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNZKV010000083.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.guided.55, whole genome shotgun sequence	3032..4237	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABNZKV010000084.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.guided.56, whole genome shotgun sequence	3032..4237	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABNZKV010000044.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.denovo.44, whole genome shotgun sequence	5889..6386	Trimethoprim	AM040708	dfrA12	100	498/498	ABNZKV010000081.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.guided.46, whole genome shotgun sequence	5930..6427	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																											enterobacteriales	Col(pHAD28)	100	131 / 131	ABNZKV010000057.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.denovo.61, whole genome shotgun sequence	1150..1280	enterobacteriales	ColpVC	96.89	193 / 193	ABNZKV010000064.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.denovo.72, whole genome shotgun sequence	996..1188		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNZKV010000041.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.denovo.41, whole genome shotgun sequence	17775..18456		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNZKV010000028.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.denovo.28, whole genome shotgun sequence	55571..56067		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNZKV010000029.1 Salmonella enterica strain PNUSAS356823 SAMN35798656-rid18520913.denovo.29, whole genome shotgun sequence	15755..16288																											avrA	ABNZKV010000002.1	434658..435527	99.885	870	0						
GCA_032788565.1_PDT001785689.1_genomic.fna	Salmonella_enterica	0.5222	410.755 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZKS010000001.1 Salmonella enterica strain PNUSAS356825 SAMN35798648-rid18528723.denovo.01, whole genome shotgun sequence	177335..177772	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZKS010000027.1 Salmonella enterica strain PNUSAS356825 SAMN35798648-rid18528723.guided.20, whole genome shotgun sequence	4473..4910	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZKS010000008.1	45233..46102	99.77	870	0						
GCA_032788605.1_PDT001941873.1_genomic.fna	Salmonella_enterica	0.5189	237.198 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZKY010000019.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325754 SAMN37856155-rid19849173.denovo.19, whole genome shotgun sequence	23189..23626	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZKY010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325754 SAMN37856155-rid19849173.denovo.52, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNZKY010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325754 SAMN37856155-rid19849173.denovo.52, whole genome shotgun sequence	7518..8321	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNZKY010000068.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325754 SAMN37856155-rid19849173.guided.42, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZKY010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325754 SAMN37856155-rid19849173.guided.57, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNZKY010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325754 SAMN37856155-rid19849173.guided.57, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNZKY010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325754 SAMN37856155-rid19849173.denovo.56, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZKY010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325754 SAMN37856155-rid19849173.guided.54, whole genome shotgun sequence	4114..5319	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNZKY010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325754 SAMN37856155-rid19849173.denovo.45, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABNZKY010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325754 SAMN37856155-rid19849173.denovo.52, whole genome shotgun sequence	5798..6059		enterobacteriales	IncFII	96.95	262 / 261	ABNZKY010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325754 SAMN37856155-rid19849173.guided.57, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNZKY010000029.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325754 SAMN37856155-rid19849173.denovo.29, whole genome shotgun sequence	33445..33586		enterobacteriales	IncX1	100	373 / 373	ABNZKY010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325754 SAMN37856155-rid19849173.denovo.50, whole genome shotgun sequence	2153..2525																											avrA	ABNZKY010000027.1	39484..40353	99.655	870	0						
GCA_032788625.1_PDT001941857.1_genomic.fna	Salmonella_enterica	0.5193	77.414 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZLB010000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325732 SAMN37855985-rid19849063.denovo.008, whole genome shotgun sequence	85826..86263	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZLB010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325732 SAMN37855985-rid19849063.denovo.055, whole genome shotgun sequence	2754..3590	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNZLB010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325732 SAMN37855985-rid19849063.denovo.055, whole genome shotgun sequence	1952..2754	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNZLB010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325732 SAMN37855985-rid19849063.denovo.055, whole genome shotgun sequence	1951..2754	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNZLB010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325732 SAMN37855985-rid19849063.denovo.055, whole genome shotgun sequence	1951..2754	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNZLB010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325732 SAMN37855985-rid19849063.denovo.055, whole genome shotgun sequence	1951..2754	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABNZLB010000177.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325732 SAMN37855985-rid19849063.guided.054, whole genome shotgun sequence	2795..3631	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNZLB010000177.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325732 SAMN37855985-rid19849063.guided.054, whole genome shotgun sequence	1993..2795	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNZLB010000177.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325732 SAMN37855985-rid19849063.guided.054, whole genome shotgun sequence	1992..2795	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNZLB010000177.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325732 SAMN37855985-rid19849063.guided.054, whole genome shotgun sequence	1992..2795	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNZLB010000177.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325732 SAMN37855985-rid19849063.guided.054, whole genome shotgun sequence	1992..2795	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABNZLB010000180.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325732 SAMN37855985-rid19849063.guided.074, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABNZLB010000072.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325732 SAMN37855985-rid19849063.denovo.076, whole genome shotgun sequence	1752..2078	enterobacteriales	IncHI2A	99.37	630 / 630	ABNZLB010000100.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325732 SAMN37855985-rid19849063.denovo.104, whole genome shotgun sequence	1547..2176		enterobacteriales	IncX1	100	373 / 373	ABNZLB010000083.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325732 SAMN37855985-rid19849063.denovo.087, whole genome shotgun sequence	2153..2525																																									avrA	ABNZLB010000036.1	39484..40353	99.655	870	0						
GCA_032788645.1_PDT001941855.1_genomic.fna	Salmonella_enterica	0.5218	177.688 KB	8	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZLC010000001.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325729 SAMN37855982-rid19849053.denovo.01, whole genome shotgun sequence	382621..383058	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZLC010000078.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325729 SAMN37855982-rid19849053.guided.36, whole genome shotgun sequence	5258..5695	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNZLC010000046.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325729 SAMN37855982-rid19849053.denovo.49, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABNZLC010000042.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325729 SAMN37855982-rid19849053.denovo.45, whole genome shotgun sequence	3175..3285																																																avrA	ABNZLC010000002.1	62007..62876	99.425	870	0						
GCA_032788665.1_PDT001941860.1_genomic.fna	Salmonella_enterica	0.5191	148.261 KB	10	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZLA010000014.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325737 SAMN37856038-rid19849083.denovo.14, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZLA010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325737 SAMN37856038-rid19849083.denovo.42, whole genome shotgun sequence	19475..20311	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZLA010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325737 SAMN37856038-rid19849083.denovo.42, whole genome shotgun sequence	20311..21114	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNZLA010000077.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325737 SAMN37856038-rid19849083.guided.47, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZLA010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325737 SAMN37856038-rid19849083.guided.68, whole genome shotgun sequence	46..882	Streptomycin	M28829	aph(6)-Id	100	809/837	ABNZLA010000081.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325737 SAMN37856038-rid19849083.guided.71, whole genome shotgun sequence	1351..2159	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZLA010000081.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325737 SAMN37856038-rid19849083.guided.71, whole genome shotgun sequence	548..1351	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNZLA010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325737 SAMN37856038-rid19849083.denovo.58, whole genome shotgun sequence	1204..2409	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZLA010000079.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325737 SAMN37856038-rid19849083.guided.67, whole genome shotgun sequence	1152..2357	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																									parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNZLA010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325737 SAMN37856038-rid19849083.denovo.61, whole genome shotgun sequence	1824..2505	enterobacteriales	IncFII	96.95	262 / 261	ABNZLA010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325737 SAMN37856038-rid19849083.denovo.42, whole genome shotgun sequence	18591..18852		enterobacteriales	IncFII	96.95	262 / 261	ABNZLA010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325737 SAMN37856038-rid19849083.guided.68, whole genome shotgun sequence	1505..1766		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNZLA010000030.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325737 SAMN37856038-rid19849083.denovo.30, whole genome shotgun sequence	33444..33585		enterobacteriales	IncX1	100	373 / 373	ABNZLA010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325737 SAMN37856038-rid19849083.denovo.54, whole genome shotgun sequence	2153..2525																											avrA	ABNZLA010000029.1	39484..40353	99.655	870	0						
GCA_032788685.1_PDT001941869.1_genomic.fna	Salmonella_enterica	0.5219	354.097 KB	5	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	2	Col440I,ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZKZ010000001.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325759 SAMN37856151-rid19849143.denovo.01, whole genome shotgun sequence	853214..853651	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZKZ010000023.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325759 SAMN37856151-rid19849143.denovo.26, whole genome shotgun sequence	3731..4567	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNZKZ010000023.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325759 SAMN37856151-rid19849143.denovo.26, whole genome shotgun sequence	4567..5369	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNZKZ010000023.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325759 SAMN37856151-rid19849143.denovo.26, whole genome shotgun sequence	4567..5370	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNZKZ010000023.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325759 SAMN37856151-rid19849143.denovo.26, whole genome shotgun sequence	4567..5370	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNZKZ010000023.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325759 SAMN37856151-rid19849143.denovo.26, whole genome shotgun sequence	4567..5370	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABNZKZ010000035.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325759 SAMN37856151-rid19849143.guided.19, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZKZ010000037.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325759 SAMN37856151-rid19849143.guided.27, whole genome shotgun sequence	1679..2515	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABNZKZ010000037.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325759 SAMN37856151-rid19849143.guided.27, whole genome shotgun sequence	877..1679	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABNZKZ010000037.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325759 SAMN37856151-rid19849143.guided.27, whole genome shotgun sequence	876..1679	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABNZKZ010000037.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325759 SAMN37856151-rid19849143.guided.27, whole genome shotgun sequence	876..1679	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABNZKZ010000037.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325759 SAMN37856151-rid19849143.guided.27, whole genome shotgun sequence	876..1679	Streptomycin	AF321550	tet(A)	100	1200/1200	ABNZKZ010000024.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325759 SAMN37856151-rid19849143.denovo.29, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZKZ010000038.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325759 SAMN37856151-rid19849143.guided.28, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	ABNZKZ010000026.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325759 SAMN37856151-rid19849143.denovo.31, whole genome shotgun sequence	1566..1675	enterobacteriales	ColpVC	98.96	193 / 193	ABNZKZ010000027.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12325759 SAMN37856151-rid19849143.denovo.32, whole genome shotgun sequence	799..991																																																avrA	ABNZKZ010000002.1	525820..526689	99.655	870	0						
GCA_032788705.1_PDT001941853.1_genomic.fna	Salmonella_enterica	0.5164	140.495 KB	12	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	11	aac(6')-Iaa,aac(3)-VIa,aadA1,aph(6)-Ic,aph(3')-IIa,aph(3')-Ia,aac(6')-Iaa,aadA1,aac(3)-VIa,aph(6)-Ic,aph(3')-IIa,aph(3')-Ia,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul1,sul1,tet(B),tet(B),bleO,bleO	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZLD010000008.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.denovo.08, whole genome shotgun sequence	66094..66531	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABNZLD010000029.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.denovo.29, whole genome shotgun sequence	4129..5031	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABNZLD010000029.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.denovo.29, whole genome shotgun sequence	5195..5986	Spectinomycin, Streptomycin	JQ414041	aph(6)-Ic	100	801/801	ABNZLD010000043.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.denovo.44, whole genome shotgun sequence	18522..19322	Streptomycin	X01702	aph(3')-IIa	100	795/795	ABNZLD010000043.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.denovo.44, whole genome shotgun sequence	19762..20556	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	aph(3')-Ia	99.75	816/816	ABNZLD010000054.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.denovo.59, whole genome shotgun sequence	4913..5728	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	EU855787	aac(6')-Iaa	97.95	438/438	ABNZLD010000072.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.guided.45, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABNZLD010000073.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.guided.48, whole genome shotgun sequence	14994..15785	Spectinomycin, Streptomycin	JQ414041	aac(3)-VIa	100	903/903	ABNZLD010000076.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.guided.65, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aph(6)-Ic	100	801/801	ABNZLD010000079.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.guided.69, whole genome shotgun sequence	1291..2091	Streptomycin	X01702	aph(3')-IIa	100	795/795	ABNZLD010000079.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.guided.69, whole genome shotgun sequence	57..851	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	aph(3')-Ia	99.75	816/816	ABNZLD010000081.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.guided.73, whole genome shotgun sequence	105..920	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	EU855787	blaTEM-1B	100	861/861	ABNZLD010000043.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.denovo.44, whole genome shotgun sequence	1946..2806	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZLD010000078.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.guided.68, whole genome shotgun sequence	1987..2847	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABNZLD010000061.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.denovo.70, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNZLD010000080.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.guided.72, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul1	100	840/840	ABNZLD010000054.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.denovo.59, whole genome shotgun sequence	1850..2689	Sulfamethoxazole	U12338	sul1	100	840/840	ABNZLD010000077.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.guided.67, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABNZLD010000053.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.denovo.58, whole genome shotgun sequence	1202..2407	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZLD010000075.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.guided.57, whole genome shotgun sequence	4117..5322	Doxycycline, Tetracycline, Minocycline	AF326777	bleO	100	392/399	ABNZLD010000033.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.denovo.33, whole genome shotgun sequence	994..1385	Bleomycin	AF051917	bleO	100	392/399	ABNZLD010000083.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.guided.79, whole genome shotgun sequence	177..568	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNZLD010000060.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.denovo.66, whole genome shotgun sequence	400..530	enterobacteriales	Col(pHAD28)	100	131 / 131	ABNZLD010000061.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.denovo.70, whole genome shotgun sequence	1150..1280		enterobacteriales	IncHI2	100	327 / 327	ABNZLD010000024.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.denovo.24, whole genome shotgun sequence	46374..46700		enterobacteriales	IncHI2A	100	630 / 630	ABNZLD010000024.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.denovo.24, whole genome shotgun sequence	61566..62195		enterobacteriales	IncX1	99.2	374 / 374	ABNZLD010000041.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325730 SAMN37855983-rid19849043.denovo.42, whole genome shotgun sequence	1774..2147																																						
GCA_032788725.1_PDT001941840.1_genomic.fna	Salmonella_enterica	0.5231	176.04 KB	7	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZLF010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325671 SAMN37855969-rid19848963.denovo.01, whole genome shotgun sequence	791247..791684	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZLF010000044.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325671 SAMN37855969-rid19848963.guided.34, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032788745.1_PDT001941836.1_genomic.fna	Salmonella_enterica	0.5196	436.154 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZLG010000001.1 Salmonella enterica strain PNUSAS390697 SAMN37855959-rid19849833.denovo.01, whole genome shotgun sequence	1100398..1100835	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZLG010000031.1 Salmonella enterica strain PNUSAS390697 SAMN37855959-rid19849833.guided.18, whole genome shotgun sequence	40177..40614	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZLG010000016.1 Salmonella enterica strain PNUSAS390697 SAMN37855959-rid19849833.denovo.16, whole genome shotgun sequence	6051..6584	enterobacteriales	IncX1	98.4	374 / 374	ABNZLG010000020.1 Salmonella enterica strain PNUSAS390697 SAMN37855959-rid19849833.denovo.22, whole genome shotgun sequence	6956..7329																																																avrA	ABNZLG010000010.1	93870..94740	99.196	871	0						
GCA_032788755.1_PDT001941844.1_genomic.fna	Salmonella_enterica	0.5212	489.323 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZLE010000001.1 Salmonella enterica strain PNUSAS390692 SAMN37855973-rid19849863.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZLE010000024.1 Salmonella enterica strain PNUSAS390692 SAMN37855973-rid19849863.guided.20, whole genome shotgun sequence	3519..3956	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZLE010000018.1 Salmonella enterica strain PNUSAS390692 SAMN37855973-rid19849863.denovo.18, whole genome shotgun sequence	6838..7480	enterobacteriales	IncFII(S)	100	262 / 262	ABNZLE010000019.1 Salmonella enterica strain PNUSAS390692 SAMN37855973-rid19849863.denovo.19, whole genome shotgun sequence	3402..3663																																																avrA	ABNZLE010000002.1	585348..586217	99.54	870	0						
GCA_032788785.1_PDT001941833.1_genomic.fna	Salmonella_enterica	0.5231	93.646 KB	14	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZLH010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325672 SAMN37855963-rid19848923.denovo.01, whole genome shotgun sequence	90417..90854	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZLH010000078.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325672 SAMN37855963-rid19848923.guided.48, whole genome shotgun sequence	10869..11306	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032788905.1_PDT001941823.1_genomic.fna	Salmonella_enterica	0.5196	148.697 KB	11	aroC_92,dnaN_84,hemD_36*,hisD_20,purE_86,sucA_94,thrA_84	247*	3,10:z10:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440I,Col440I	aroC	100	100	aroC_92	dnaN	100	100	dnaN_84	hemD	99.7685185185185	100	hemD_36*	hisD	100	100	hisD_20	purE	100	100	purE_86	sucA	100	100	sucA_94	thrA	100	100	thrA_84	3,10	z10	1,5	Salmonella enterica subspecies enterica (subspecies I)	Lexington		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZLO010000001.1 Salmonella enterica subsp. enterica serovar Lexington strain FSIS12325518 SAMN37855956-rid19848853.denovo.01, whole genome shotgun sequence	180349..180786	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZLO010000078.1 Salmonella enterica subsp. enterica serovar Lexington strain FSIS12325518 SAMN37855956-rid19848853.guided.43, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABNZLO010000061.1 Salmonella enterica subsp. enterica serovar Lexington strain FSIS12325518 SAMN37855956-rid19848853.denovo.64, whole genome shotgun sequence	667..797	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNZLO010000063.1 Salmonella enterica subsp. enterica serovar Lexington strain FSIS12325518 SAMN37855956-rid19848853.denovo.66, whole genome shotgun sequence	1462..1592		enterobacteriales	Col440I	93.64	110 / 114	ABNZLO010000055.1 Salmonella enterica subsp. enterica serovar Lexington strain FSIS12325518 SAMN37855956-rid19848853.denovo.58, whole genome shotgun sequence	1189..1298		enterobacteriales	Col440I	94.74	114 / 114	ABNZLO010000060.1 Salmonella enterica subsp. enterica serovar Lexington strain FSIS12325518 SAMN37855956-rid19848853.denovo.63, whole genome shotgun sequence	787..900																																		avrA	ABNZLO010000013.1	43602..44471	99.425	870	0						
GCA_032788925.1_PDT001941824.1_genomic.fna	Salmonella_enterica	0.5211	435.811 KB	5	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	2	aac(6')-Iaa,aac(6')-Iaa,tet(C),tet(C)	1	parC_p.T57S	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABNZLN010000003.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325519 SAMN37855957-rid19848863.denovo.03, whole genome shotgun sequence	478776..479213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABNZLN010000030.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325519 SAMN37855957-rid19848863.guided.17, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	tet(C)	99.83	1191/1191	ABNZLN010000020.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325519 SAMN37855957-rid19848863.denovo.23, whole genome shotgun sequence	885..2075	Doxycycline, Tetracycline	AF055345	tet(C)	99.83	1191/1191	ABNZLN010000033.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325519 SAMN37855957-rid19848863.guided.24, whole genome shotgun sequence	925..2115	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZLN010000005.1	144725..145594	99.31	870	0						
GCA_032789025.1_PDT001941811.1_genomic.fna	Salmonella_enterica	0.5224	762.572 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZLU010000001.1 Salmonella enterica strain PNUSAS392176 SAMN37855889-rid19849743.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZLU010000026.1 Salmonella enterica strain PNUSAS392176 SAMN37855889-rid19849743.guided.21, whole genome shotgun sequence	316..753	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZLU010000004.1	506278..507147	99.655	870	0						
GCA_032789085.1_PDT001941809.1_genomic.fna	Salmonella_enterica	0.5217	411.868 KB	3	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNZLV010000001.1 Salmonella enterica strain PNUSAS392193 SAMN37855896-rid19849733.denovo.01, whole genome shotgun sequence	661118..661555	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNZLV010000034.1 Salmonella enterica strain PNUSAS392193 SAMN37855896-rid19849733.guided.18, whole genome shotgun sequence	9614..10051	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZLV010000003.1	128624..129492	99.655	869	0						
GCA_032789105.1_PDT001941807.1_genomic.fna	Salmonella_enterica	0.5201	214.224 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZLY010000001.1 Salmonella enterica strain PNUSAS392182 SAMN37855888-rid19849723.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZLY010000048.1 Salmonella enterica strain PNUSAS392182 SAMN37855888-rid19849723.guided.30, whole genome shotgun sequence	18817..19254	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI2(Delta)	100	316 / 316	ABNZLY010000025.1 Salmonella enterica strain PNUSAS392182 SAMN37855888-rid19849723.denovo.25, whole genome shotgun sequence	26496..26811																																																						avrA	ABNZLY010000004.1	174642..175510	99.77	870	0						
GCA_032789125.1_PDT001941806.1_genomic.fna	Salmonella_enterica	0.5216	374.814 KB	6	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZLX010000001.1 Salmonella enterica strain PNUSAS392184 SAMN37855883-rid19849713.denovo.01, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZLX010000032.1 Salmonella enterica strain PNUSAS392184 SAMN37855883-rid19849713.guided.21, whole genome shotgun sequence	10446..10883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZLX010000011.1	36960..37829	99.425	870	0						
GCA_032789145.1_PDT001941799.1_genomic.fna	Salmonella_enterica	0.5217	762.383 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZLZ010000001.1 Salmonella enterica strain PNUSAS392173 SAMN37855877-rid19849693.denovo.01, whole genome shotgun sequence	482130..482567	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZLZ010000024.1 Salmonella enterica strain PNUSAS392173 SAMN37855877-rid19849693.guided.15, whole genome shotgun sequence	309..746	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABNZLZ010000008.1 Salmonella enterica strain PNUSAS392173 SAMN37855877-rid19849693.denovo.08, whole genome shotgun sequence	5742..6887	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNZLZ010000021.1 Salmonella enterica strain PNUSAS392173 SAMN37855877-rid19849693.guided.11, whole genome shotgun sequence	5759..6904	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNZLZ010000008.1 Salmonella enterica strain PNUSAS392173 SAMN37855877-rid19849693.denovo.08, whole genome shotgun sequence	77160..77301																																																						avrA	ABNZLZ010000004.1	553685..554554	99.655	870	0						
GCA_032789165.1_PDT001941795.1_genomic.fna	Salmonella_enterica	0.5222	377.909 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZMA010000001.1 Salmonella enterica strain PNUSAS392201 SAMN37855891-rid19848693.denovo.01, whole genome shotgun sequence	454798..455235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZMA010000044.1 Salmonella enterica strain PNUSAS392201 SAMN37855891-rid19848693.guided.26, whole genome shotgun sequence	6053..6490	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZMA010000002.1	95168..96037	98.966	870	0						
GCA_032789185.1_PDT001941794.1_genomic.fna	Salmonella_enterica	0.5213	490.157 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZMB010000001.1 Salmonella enterica strain PNUSAS392183 SAMN37855887-rid19848683.denovo.01, whole genome shotgun sequence	510506..510943	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZMB010000024.1 Salmonella enterica strain PNUSAS392183 SAMN37855887-rid19848683.guided.14, whole genome shotgun sequence	22201..22638	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZMB010000013.1 Salmonella enterica strain PNUSAS392183 SAMN37855887-rid19848683.denovo.13, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABNZMB010000013.1 Salmonella enterica strain PNUSAS392183 SAMN37855887-rid19848683.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNZMB010000002.1	553678..554547	99.54	870	0						
GCA_032789205.1_PDT001941789.1_genomic.fna	Salmonella_enterica	0.5213	191.426 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZMD010000001.1 Salmonella enterica strain PNUSAS392190 SAMN37855898-rid19849653.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZMD010000057.1 Salmonella enterica strain PNUSAS392190 SAMN37855898-rid19849653.guided.33, whole genome shotgun sequence	30237..30674	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNZMD010000040.1 Salmonella enterica strain PNUSAS392190 SAMN37855898-rid19849653.denovo.43, whole genome shotgun sequence	967..1118																																																						avrA	ABNZMD010000005.1	184070..184938	99.77	870	0						
GCA_032789225.1_PDT001941787.1_genomic.fna	Salmonella_enterica	0.5216	748.485 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	1	IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZMG010000001.1 Salmonella enterica strain PNUSAS392172 SAMN37855881-rid19849643.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZMG010000011.1 Salmonella enterica strain PNUSAS392172 SAMN37855881-rid19849643.denovo.15, whole genome shotgun sequence	33291..34127	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZMG010000011.1 Salmonella enterica strain PNUSAS392172 SAMN37855881-rid19849643.denovo.15, whole genome shotgun sequence	32488..33291	Streptomycin	AF321551	aac(6')-Iaa	99.54	438/438	ABNZMG010000035.1 Salmonella enterica strain PNUSAS392172 SAMN37855881-rid19849643.guided.10, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZMG010000037.1 Salmonella enterica strain PNUSAS392172 SAMN37855881-rid19849643.guided.14, whole genome shotgun sequence	33332..34168	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZMG010000037.1 Salmonella enterica strain PNUSAS392172 SAMN37855881-rid19849643.guided.14, whole genome shotgun sequence	32529..33332	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNZMG010000011.1 Salmonella enterica strain PNUSAS392172 SAMN37855881-rid19849643.denovo.15, whole genome shotgun sequence	2126..3271	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNZMG010000037.1 Salmonella enterica strain PNUSAS392172 SAMN37855881-rid19849643.guided.14, whole genome shotgun sequence	2167..3312	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNZMG010000011.1 Salmonella enterica strain PNUSAS392172 SAMN37855881-rid19849643.denovo.15, whole genome shotgun sequence	31612..32427	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZMG010000037.1 Salmonella enterica strain PNUSAS392172 SAMN37855881-rid19849643.guided.14, whole genome shotgun sequence	31653..32468	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNZMG010000011.1 Salmonella enterica strain PNUSAS392172 SAMN37855881-rid19849643.denovo.15, whole genome shotgun sequence	35388..36662	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNZMG010000037.1 Salmonella enterica strain PNUSAS392172 SAMN37855881-rid19849643.guided.14, whole genome shotgun sequence	35429..36703	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncC	100	417 / 417	ABNZMG010000010.1 Salmonella enterica strain PNUSAS392172 SAMN37855881-rid19849643.denovo.13, whole genome shotgun sequence	17493..17909																																																						avrA	ABNZMG010000003.1	561928..562798	99.656	871	0						
GCA_032789245.1_PDT001941791.1_genomic.fna	Salmonella_enterica	0.5223	244.38 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZMC010000001.1 Salmonella enterica strain PNUSAS392196 SAMN37855871-rid19849663.denovo.01, whole genome shotgun sequence	460175..460612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZMC010000044.1 Salmonella enterica strain PNUSAS392196 SAMN37855871-rid19849663.guided.23, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZMC010000002.1	149828..150697	99.655	870	0						
GCA_032789265.1_PDT001941785.1_genomic.fna	Salmonella_enterica	0.5213	214.276 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		1	IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZMF010000001.1 Salmonella enterica strain PNUSAS392189 SAMN37855869-rid19848633.denovo.01, whole genome shotgun sequence	458968..459405	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZMF010000019.1 Salmonella enterica strain PNUSAS392189 SAMN37855869-rid19848633.denovo.19, whole genome shotgun sequence	80667..81503	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZMF010000019.1 Salmonella enterica strain PNUSAS392189 SAMN37855869-rid19848633.denovo.19, whole genome shotgun sequence	79864..80667	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNZMF010000067.1 Salmonella enterica strain PNUSAS392189 SAMN37855869-rid19848633.guided.41, whole genome shotgun sequence	5167..5604	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZMF010000069.1 Salmonella enterica strain PNUSAS392189 SAMN37855869-rid19848633.guided.45, whole genome shotgun sequence	3231..4067	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZMF010000069.1 Salmonella enterica strain PNUSAS392189 SAMN37855869-rid19848633.guided.45, whole genome shotgun sequence	2428..3231	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABNZMF010000019.1 Salmonella enterica strain PNUSAS392189 SAMN37855869-rid19848633.denovo.19, whole genome shotgun sequence	49502..50647	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNZMF010000068.1 Salmonella enterica strain PNUSAS392189 SAMN37855869-rid19848633.guided.44, whole genome shotgun sequence	1294..2439	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.27	1214/1215	ABNZMF010000019.1 Salmonella enterica strain PNUSAS392189 SAMN37855869-rid19848633.denovo.19, whole genome shotgun sequence	84639..85852	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABNZMF010000070.1 Salmonella enterica strain PNUSAS392189 SAMN37855869-rid19848633.guided.49, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNZMF010000019.1 Salmonella enterica strain PNUSAS392189 SAMN37855869-rid19848633.denovo.19, whole genome shotgun sequence	78988..79803	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZMF010000069.1 Salmonella enterica strain PNUSAS392189 SAMN37855869-rid19848633.guided.45, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNZMF010000019.1 Salmonella enterica strain PNUSAS392189 SAMN37855869-rid19848633.denovo.19, whole genome shotgun sequence	82764..84038	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNZMF010000069.1 Salmonella enterica strain PNUSAS392189 SAMN37855869-rid19848633.guided.45, whole genome shotgun sequence	5328..6602	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABNZMF010000025.1 Salmonella enterica strain PNUSAS392189 SAMN37855869-rid19848633.denovo.25, whole genome shotgun sequence	17493..17909																																																						avrA	ABNZMF010000006.1	98459..99328	99.885	870	0						
GCA_032789285.1_PDT001941788.1_genomic.fna	Salmonella_enterica	0.5212	351.479 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZME010000003.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.denovo.03, whole genome shotgun sequence	159451..159888	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZME010000026.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.denovo.26, whole genome shotgun sequence	13208..14044	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZME010000026.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.denovo.26, whole genome shotgun sequence	12405..13208	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNZME010000035.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.denovo.43, whole genome shotgun sequence	135..950	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	aac(6')-Iaa	98.63	438/438	ABNZME010000048.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.guided.31, whole genome shotgun sequence	10875..11312	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZME010000049.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.guided.33, whole genome shotgun sequence	3231..4067	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZME010000049.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.guided.33, whole genome shotgun sequence	2428..3231	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNZME010000052.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.guided.42, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	blaCMY-2	100	1146/1146	ABNZME010000027.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.denovo.28, whole genome shotgun sequence	16651..17796	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNZME010000032.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.denovo.37, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNZME010000032.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.denovo.37, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNZME010000032.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.denovo.37, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNZME010000045.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.guided.27, whole genome shotgun sequence	16692..17837	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNZME010000051.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.guided.40, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNZME010000051.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.guided.40, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNZME010000051.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.guided.40, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNZME010000026.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.denovo.26, whole genome shotgun sequence	17180..18393	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNZME010000050.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.guided.38, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNZME010000026.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.denovo.26, whole genome shotgun sequence	11529..12344	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZME010000049.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.guided.33, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNZME010000026.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.denovo.26, whole genome shotgun sequence	15305..16579	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNZME010000049.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.guided.33, whole genome shotgun sequence	5328..6602	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncC	100	417 / 417	ABNZME010000023.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.denovo.23, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNZME010000018.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.denovo.18, whole genome shotgun sequence	29250..29509		enterobacteriales	IncX1	98.66	374 / 374	ABNZME010000018.1 Salmonella enterica strain PNUSAS392191 SAMN37855897-rid19848643.denovo.18, whole genome shotgun sequence	65104..65477																																									avrA	ABNZME010000006.1	173549..174417	99.54	870	0						
GCA_032789305.1_PDT001941783.1_genomic.fna	Salmonella_enterica	0.5214	489.896 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZMH010000001.1 Salmonella enterica strain PNUSAS392352 SAMN37855879-rid19848623.denovo.01, whole genome shotgun sequence	494347..494784	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZMH010000029.1 Salmonella enterica strain PNUSAS392352 SAMN37855879-rid19848623.guided.17, whole genome shotgun sequence	2991..3428	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZMH010000013.1 Salmonella enterica strain PNUSAS392352 SAMN37855879-rid19848623.denovo.13, whole genome shotgun sequence	50251..50893	enterobacteriales	IncFII(S)	100	262 / 262	ABNZMH010000013.1 Salmonella enterica strain PNUSAS392352 SAMN37855879-rid19848623.denovo.13, whole genome shotgun sequence	5998..6259																																																avrA	ABNZMH010000002.1	553636..554505	99.54	870	0						
GCA_032789325.1_PDT001941781.1_genomic.fna	Salmonella_enterica	0.5213	407.774 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNZMK010000001.1 Salmonella enterica strain PNUSAS392197 SAMN37855868-rid19849613.denovo.01, whole genome shotgun sequence	456548..456985	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNZMK010000022.1 Salmonella enterica strain PNUSAS392197 SAMN37855868-rid19849613.guided.16, whole genome shotgun sequence	24943..25380	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZMK010000004.1	149711..150580	99.425	870	0						
GCA_032789345.1_PDT001941777.1_genomic.fna	Salmonella_enterica	0.5217	762.445 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZML010000001.1 Salmonella enterica strain PNUSAS392177 SAMN37855856-rid19849593.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZML010000019.1 Salmonella enterica strain PNUSAS392177 SAMN37855856-rid19849593.guided.08, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZML010000004.1	553685..554554	99.655	870	0						
GCA_032789385.1_PDT001941780.1_genomic.fna	Salmonella_enterica	0.5215	324.422 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZMJ010000001.1 Salmonella enterica strain PNUSAS392185 SAMN37855860-rid19848603.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZMJ010000045.1 Salmonella enterica strain PNUSAS392185 SAMN37855860-rid19848603.guided.29, whole genome shotgun sequence	5036..5473	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZMJ010000017.1 Salmonella enterica strain PNUSAS392185 SAMN37855860-rid19848603.denovo.17, whole genome shotgun sequence	48449..49091	enterobacteriales	IncFII(S)	100	262 / 262	ABNZMJ010000017.1 Salmonella enterica strain PNUSAS392185 SAMN37855860-rid19848603.denovo.17, whole genome shotgun sequence	64176..64437																																																avrA	ABNZMJ010000002.1	209366..210235	99.885	870	0						
GCA_032789405.1_PDT001941779.1_genomic.fna	Salmonella_enterica	0.5222	376.532 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZMI010000004.1 Salmonella enterica strain PNUSAS392356 SAMN37855863-rid19849603.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZMI010000041.1 Salmonella enterica strain PNUSAS392356 SAMN37855863-rid19849603.guided.32, whole genome shotgun sequence	1324..1761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZMI010000015.1 Salmonella enterica strain PNUSAS392356 SAMN37855863-rid19849603.denovo.15, whole genome shotgun sequence	44772..45414	enterobacteriales	IncFII(S)	100	262 / 262	ABNZMI010000015.1 Salmonella enterica strain PNUSAS392356 SAMN37855863-rid19849603.denovo.15, whole genome shotgun sequence	29426..29687																																																avrA	ABNZMI010000001.1	446736..447604	100	869	0						
GCA_032789425.1_ASM3278942v1_genomic.fna	Salmonella_enterica	0.5222	397.72 KB	5	aroC_351,dnaN_46,hemD_119,hisD_441,purE_384,sucA_349,thrA_368	Unknown	6,14:z4,z24:-	2	aac(6')-Iaa,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_351	dnaN	100	100	dnaN_46	hemD	100	100	hemD_119	hisD	100	100	hisD_441	purE	100	100	purE_384	sucA	100	100	sucA_349	thrA	100	100	thrA_368	6,14	z4,z24	-	Salmonella enterica subspecies enterica (subspecies I)	Uzaramo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	JAWDKR010000002.1 Salmonella enterica subsp. enterica serovar Uzaramo strain SE-143 SE-14300002, whole genome shotgun sequence	153908..154345	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	JAWDKR010000006.1 Salmonella enterica subsp. enterica serovar Uzaramo strain SE-143 SE-14300006, whole genome shotgun sequence	44135..44557	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	JAWDKR010000009.1	60953..61822	99.31	870	0						
GCA_032789435.1_ASM3278943v1_genomic.fna	Salmonella_enterica	0.522	506.981 KB	4	aroC_351,dnaN_46,hemD_119,hisD_441,purE_384,sucA_349,thrA_368	Unknown	6,14:z4,z24:-	4	aac(6')-Iaa,blaTEM-1B,fosA7,sul2	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_351	dnaN	100	100	dnaN_46	hemD	100	100	hemD_119	hisD	100	100	hisD_441	purE	100	100	purE_384	sucA	100	100	sucA_349	thrA	100	100	thrA_368	6,14	z4,z24	-	Salmonella enterica subspecies enterica (subspecies I)	Uzaramo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	JAWDKQ010000003.1 Salmonella enterica subsp. enterica serovar Uzaramo strain SE-144 SE-14400003, whole genome shotgun sequence	154104..154541	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	JAWDKQ010000013.1 Salmonella enterica subsp. enterica serovar Uzaramo strain SE-144 SE-14400013, whole genome shotgun sequence	32923..33783	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	fosA7	97.16	423/423	JAWDKQ010000002.1 Salmonella enterica subsp. enterica serovar Uzaramo strain SE-144 SE-14400002, whole genome shotgun sequence	367291..367713	Fosfomycin	LAPJ01000014	sul2	100	816/816	JAWDKQ010000013.1 Salmonella enterica subsp. enterica serovar Uzaramo strain SE-144 SE-14400013, whole genome shotgun sequence	27285..28100	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	JAWDKQ010000013.1 Salmonella enterica subsp. enterica serovar Uzaramo strain SE-144 SE-14400013, whole genome shotgun sequence	42546..42687																																																						avrA	JAWDKQ010000001.1	144548..145417	99.31	870	0						
GCA_032789455.1_ASM3278945v1_genomic.fna	Salmonella_enterica	0.523	477.344 KB	4	aroC_572,dnaN_519,hemD_25,hisD_402,purE_567,sucA_9,thrA_354	2671	16:c:e,n,x	2	aac(6')-Iaa,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_572	dnaN	100	100	dnaN_519	hemD	100	100	hemD_25	hisD	100	100	hisD_402	purE	100	100	purE_567	sucA	100	100	sucA_9	thrA	100	100	thrA_354	16	c	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Shamba		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	JAWDKT010000008.1 Salmonella enterica subsp. enterica serovar Shamba strain SE-135 SE-13500008, whole genome shotgun sequence	114227..114664	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	JAWDKT010000001.1 Salmonella enterica subsp. enterica serovar Shamba strain SE-135 SE-13500001, whole genome shotgun sequence	378819..379242	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	JAWDKT010000002.1	127373..128242	98.966	870	0						
GCA_032789545.1_PDT001941776.1_genomic.fna	Salmonella_enterica	0.5196	374.863 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI2(Delta),IncX4	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNZMN010000010.1 Salmonella enterica strain PNUSAS392175 SAMN37855862-rid19849583.denovo.10, whole genome shotgun sequence	70815..71252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNZMN010000035.1 Salmonella enterica strain PNUSAS392175 SAMN37855862-rid19849583.guided.13, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	98.42	316 / 316	ABNZMN010000017.1 Salmonella enterica strain PNUSAS392175 SAMN37855862-rid19849583.denovo.18, whole genome shotgun sequence	25944..26259	enterobacteriales	IncX4	98.88	712 / 712	ABNZMN010000022.1 Salmonella enterica strain PNUSAS392175 SAMN37855862-rid19849583.denovo.23, whole genome shotgun sequence	28681..29392																																																avrA	ABNZMN010000004.1	94222..95091	98.966	870	0						
GCA_032789565.1_PDT001941767.1_genomic.fna	Salmonella_enterica	0.5215	401.356 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZMP010000001.1 Salmonella enterica strain PNUSAS392317 SAMN37855792-rid19849533.denovo.01, whole genome shotgun sequence	693997..694434	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZMP010000040.1 Salmonella enterica strain PNUSAS392317 SAMN37855792-rid19849533.guided.16, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZMP010000003.1	513741..514609	99.655	870	0						
GCA_032789585.1_PDT001941757.1_genomic.fna	Salmonella_enterica	0.5221	263.566 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZMR010000001.1 Salmonella enterica strain PNUSAS392324 SAMN37855799-rid19849473.denovo.01, whole genome shotgun sequence	572211..572648	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZMR010000036.1 Salmonella enterica strain PNUSAS392324 SAMN37855799-rid19849473.guided.17, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZMR010000002.1	149923..150792	99.655	870	0						
GCA_032789605.1_ASM3278960v1_genomic.fna	Salmonella_enterica	0.5196	151.725 KB	9	aroC_293,dnaN_264,hemD_80,hisD_257,purE_294,sucA_271,thrA_236	1208	42:r:-	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_293	dnaN	100	100	dnaN_264	hemD	100	100	hemD_80	hisD	100	100	hisD_257	purE	100	100	purE_294	sucA	100	100	sucA_271	thrA	100	100	thrA_236	42	r	-	Salmonella enterica subspecies salamae (subspecies II)	II 42:r:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.66	438/438	JAWDKW010000001.1 Salmonella enterica strain SE-349 SE-34900001, whole genome shotgun sequence	390669..391106	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032789615.1_ASM3278961v1_genomic.fna	Salmonella_enterica	0.523	395.585 KB	5	aroC_572,dnaN_519,hemD_25,hisD_402,purE_567,sucA_9,thrA_354	2671	16:c:e,n,x	2	aac(6')-Iaa,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_572	dnaN	100	100	dnaN_519	hemD	100	100	hemD_25	hisD	100	100	hisD_402	purE	100	100	purE_567	sucA	100	100	sucA_9	thrA	100	100	thrA_354	16	c	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Shamba		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	JAWDKU010000009.1 Salmonella enterica subsp. enterica serovar Shamba strain SE-110 SE-11000009, whole genome shotgun sequence	114227..114664	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	JAWDKU010000005.1 Salmonella enterica subsp. enterica serovar Shamba strain SE-110 SE-11000005, whole genome shotgun sequence	55454..55877	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	JAWDKU010000001.1	127373..128242	98.966	870	0						
GCA_032789645.1_ASM3278964v1_genomic.fna	Salmonella_enterica	0.5227	329.177 KB	5	aroC_572,dnaN_519,hemD_25,hisD_402,purE_567,sucA_9,thrA_354	2671	16:c:e,n,x	4	aac(6')-Iaa,blaTEM-1B,fosA7,sul2	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_572	dnaN	100	100	dnaN_519	hemD	100	100	hemD_25	hisD	100	100	hisD_402	purE	100	100	purE_567	sucA	100	100	sucA_9	thrA	100	100	thrA_354	16	c	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Shamba		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	JAWDKS010000007.1 Salmonella enterica subsp. enterica serovar Shamba strain SE-138 SE-13800007, whole genome shotgun sequence	114227..114664	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	JAWDKS010000017.1 Salmonella enterica subsp. enterica serovar Shamba strain SE-138 SE-13800017, whole genome shotgun sequence	32924..33784	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	fosA7	98.11	424/423	JAWDKS010000001.1 Salmonella enterica subsp. enterica serovar Shamba strain SE-138 SE-13800001, whole genome shotgun sequence	378829..379252	Fosfomycin	LAPJ01000014	sul2	100	816/816	JAWDKS010000017.1 Salmonella enterica subsp. enterica serovar Shamba strain SE-138 SE-13800017, whole genome shotgun sequence	27286..28101	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	JAWDKS010000017.1 Salmonella enterica subsp. enterica serovar Shamba strain SE-138 SE-13800017, whole genome shotgun sequence	42547..42688																																																						avrA	JAWDKS010000002.1	94162..95031	98.966	870	0						
GCA_032789655.1_PDT001941752.1_genomic.fna	Salmonella_enterica	0.5214	391.755 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZMT010000001.1 Salmonella enterica strain PNUSAS392326 SAMN37855557-rid19849453.denovo.01, whole genome shotgun sequence	170667..171104	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZMT010000035.1 Salmonella enterica strain PNUSAS392326 SAMN37855557-rid19849453.guided.21, whole genome shotgun sequence	2684..3121	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZMT010000003.1	339173..340042	99.31	870	0						
GCA_032789685.1_PDT001941749.1_genomic.fna	Salmonella_enterica	0.522	275.215 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZMU010000001.1 Salmonella enterica strain PNUSAS392273 SAMN37855499-rid19849443.denovo.01, whole genome shotgun sequence	381670..382107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZMU010000039.1 Salmonella enterica strain PNUSAS392273 SAMN37855499-rid19849443.guided.28, whole genome shotgun sequence	6269..6706	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZMU010000003.1	209709..210577	99.77	870	0						
GCA_032789695.1_PDT001941754.1_genomic.fna	Salmonella_enterica	0.5224	263.61 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(Yp)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZMS010000001.1 Salmonella enterica strain PNUSAS392313 SAMN37855787-rid19849463.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZMS010000036.1 Salmonella enterica strain PNUSAS392313 SAMN37855787-rid19849463.guided.20, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	91.96	224 / 230	ABNZMS010000018.1 Salmonella enterica strain PNUSAS392313 SAMN37855787-rid19849463.denovo.21, whole genome shotgun sequence	32153..32373																																																						avrA	ABNZMS010000003.1	149828..150697	99.54	870	0						
GCA_032789725.1_PDT001941743.1_genomic.fna	Salmonella_enterica	0.5189	620.239 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa	1	parC_p.T57S	4	IncFIA(HI1),IncFII(p96A),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZMV010000001.1 Salmonella enterica strain PNUSAS392345 SAMN37855539-rid19848413.denovo.01, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIA(HI1)	100	388 / 388	ABNZMV010000008.1 Salmonella enterica strain PNUSAS392345 SAMN37855539-rid19848413.denovo.08, whole genome shotgun sequence	47265..47652	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZMV010000014.1 Salmonella enterica strain PNUSAS392345 SAMN37855539-rid19848413.denovo.14, whole genome shotgun sequence	34954..35487		enterobacteriales	IncHI1A	99.76	420 / 420	ABNZMV010000008.1 Salmonella enterica strain PNUSAS392345 SAMN37855539-rid19848413.denovo.08, whole genome shotgun sequence	197549..197968		enterobacteriales	IncHI1B(R27)	100	540 / 540	ABNZMV010000008.1 Salmonella enterica strain PNUSAS392345 SAMN37855539-rid19848413.denovo.08, whole genome shotgun sequence	183933..184472	R27																																	avrA	ABNZMV010000003.1	497244..498112	99.425	870	0						
GCA_032789745.1_PDT001941742.1_genomic.fna	Salmonella_enterica	0.5189	622.818 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	IncFIA(HI1),IncFII(p96A),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZMW010000001.1 Salmonella enterica strain PNUSAS392343 SAMN37855537-rid19849423.denovo.01, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZMW010000031.1 Salmonella enterica strain PNUSAS392343 SAMN37855537-rid19849423.guided.24, whole genome shotgun sequence	674..1111	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIA(HI1)	100	388 / 388	ABNZMW010000008.1 Salmonella enterica strain PNUSAS392343 SAMN37855537-rid19849423.denovo.08, whole genome shotgun sequence	206732..207119	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZMW010000014.1 Salmonella enterica strain PNUSAS392343 SAMN37855537-rid19849423.denovo.14, whole genome shotgun sequence	34954..35487		enterobacteriales	IncHI1A	99.76	420 / 420	ABNZMW010000008.1 Salmonella enterica strain PNUSAS392343 SAMN37855537-rid19849423.denovo.08, whole genome shotgun sequence	145739..146158		enterobacteriales	IncHI1B(R27)	100	540 / 540	ABNZMW010000008.1 Salmonella enterica strain PNUSAS392343 SAMN37855537-rid19849423.denovo.08, whole genome shotgun sequence	132123..132662	R27																																	avrA	ABNZMW010000003.1	497244..498112	99.425	870	0						
GCA_032789765.1_PDT001941740.1_genomic.fna	Salmonella_enterica	0.5225	616.45 KB	4	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZMX010000001.1 Salmonella enterica strain PNUSAS392334 SAMN37855565-rid19848393.denovo.01, whole genome shotgun sequence	346600..347037	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZMX010000049.1 Salmonella enterica strain PNUSAS392334 SAMN37855565-rid19848393.guided.20, whole genome shotgun sequence	5168..5605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNZMX010000023.1 Salmonella enterica strain PNUSAS392334 SAMN37855565-rid19848393.denovo.26, whole genome shotgun sequence	1506..1636	enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNZMX010000029.1 Salmonella enterica strain PNUSAS392334 SAMN37855565-rid19848393.denovo.32, whole genome shotgun sequence	1709..1839		enterobacteriales	Col440I	90.27	113 / 114	ABNZMX010000021.1 Salmonella enterica strain PNUSAS392334 SAMN37855565-rid19848393.denovo.24, whole genome shotgun sequence	3345..3457																																									avrA	ABNZMX010000002.1	95269..96138	99.425	870	0						
GCA_032789785.1_PDT001941739.1_genomic.fna	Salmonella_enterica	0.521	489.739 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZMY010000001.1 Salmonella enterica strain PNUSAS392328 SAMN37855559-rid19849413.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZMY010000025.1 Salmonella enterica strain PNUSAS392328 SAMN37855559-rid19849413.guided.16, whole genome shotgun sequence	15597..16034	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZMY010000012.1 Salmonella enterica strain PNUSAS392328 SAMN37855559-rid19849413.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABNZMY010000015.1 Salmonella enterica strain PNUSAS392328 SAMN37855559-rid19849413.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABNZMY010000002.1	553187..554056	99.54	870	0						
GCA_032789865.1_PDT001941734.1_genomic.fna	Salmonella_enterica	0.5202	207.278 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	5	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		3	ColpVC,IncC,IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZNB010000001.1 Salmonella enterica strain PNUSAS392290 SAMN37855554-rid19849403.denovo.01, whole genome shotgun sequence	369350..369787	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNZNB010000062.1 Salmonella enterica strain PNUSAS392290 SAMN37855554-rid19849403.denovo.68, whole genome shotgun sequence	137..952	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	V00359	aac(6')-Iaa	100	438/438	ABNZNB010000073.1 Salmonella enterica strain PNUSAS392290 SAMN37855554-rid19849403.guided.40, whole genome shotgun sequence	2621..3058	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNZNB010000077.1 Salmonella enterica strain PNUSAS392290 SAMN37855554-rid19849403.guided.67, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin	V00359	blaCMY-2	100	1146/1146	ABNZNB010000023.1 Salmonella enterica strain PNUSAS392290 SAMN37855554-rid19849403.denovo.23, whole genome shotgun sequence	14271..15416	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNZNB010000076.1 Salmonella enterica strain PNUSAS392290 SAMN37855554-rid19849403.guided.52, whole genome shotgun sequence	4097..5242	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABNZNB010000037.1 Salmonella enterica strain PNUSAS392290 SAMN37855554-rid19849403.denovo.37, whole genome shotgun sequence	10341..11156	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZNB010000075.1 Salmonella enterica strain PNUSAS392290 SAMN37855554-rid19849403.guided.45, whole genome shotgun sequence	3114..3929	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNZNB010000037.1 Salmonella enterica strain PNUSAS392290 SAMN37855554-rid19849403.denovo.37, whole genome shotgun sequence	13333..14532	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZNB010000075.1 Salmonella enterica strain PNUSAS392290 SAMN37855554-rid19849403.guided.45, whole genome shotgun sequence	6106..7305	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	ColpVC	98.96	193 / 193	ABNZNB010000059.1 Salmonella enterica strain PNUSAS392290 SAMN37855554-rid19849403.denovo.64, whole genome shotgun sequence	806..998	enterobacteriales	IncC	100	417 / 417	ABNZNB010000034.1 Salmonella enterica strain PNUSAS392290 SAMN37855554-rid19849403.denovo.34, whole genome shotgun sequence	28111..28527		enterobacteriales	IncX1	98.66	374 / 374	ABNZNB010000032.1 Salmonella enterica strain PNUSAS392290 SAMN37855554-rid19849403.denovo.32, whole genome shotgun sequence	22953..23326																																									avrA	ABNZNB010000003.1	124246..125115	99.885	870	0						
GCA_032789885.1_PDT001941723.1_genomic.fna	Salmonella_enterica	0.5213	538.235 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15!,purE_15!,sucA_12,thrA_12	Unknown	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15!	purE	100	100	purE_15!	sucA	100	100	sucA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZNE010000001.1 Salmonella enterica strain PNUSAS392333 SAMN37855564-rid19848273.denovo.01, whole genome shotgun sequence	645052..645489	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZNE010000056.1 Salmonella enterica strain PNUSAS392333 SAMN37855564-rid19848273.guided.16, whole genome shotgun sequence	2968..3405	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNZNE010000016.1 Salmonella enterica strain PNUSAS392333 SAMN37855564-rid19848273.denovo.19, whole genome shotgun sequence	6368..7010																																																						avrA	ABNZNE010000004.1	140050..140919	99.655	870	0						
GCA_032789905.1_PDT001941722.1_genomic.fna	Salmonella_enterica	0.521	406.403 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZND010000001.1 Salmonella enterica strain PNUSAS392277 SAMN37855494-rid19849363.denovo.01, whole genome shotgun sequence	815106..815543	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNZND010000023.1 Salmonella enterica strain PNUSAS392277 SAMN37855494-rid19849363.denovo.30, whole genome shotgun sequence	86..916	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABNZND010000023.1 Salmonella enterica strain PNUSAS392277 SAMN37855494-rid19849363.denovo.30, whole genome shotgun sequence	922..1725	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABNZND010000029.1 Salmonella enterica strain PNUSAS392277 SAMN37855494-rid19849363.guided.13, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABNZND010000035.1 Salmonella enterica strain PNUSAS392277 SAMN37855494-rid19849363.guided.29, whole genome shotgun sequence	842..1672	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABNZND010000035.1 Salmonella enterica strain PNUSAS392277 SAMN37855494-rid19849363.guided.29, whole genome shotgun sequence	33..836	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNZND010000017.1 Salmonella enterica strain PNUSAS392277 SAMN37855494-rid19849363.denovo.18, whole genome shotgun sequence	21233..22093	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZND010000032.1 Salmonella enterica strain PNUSAS392277 SAMN37855494-rid19849363.guided.23, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNZND010000017.1 Salmonella enterica strain PNUSAS392277 SAMN37855494-rid19849363.denovo.18, whole genome shotgun sequence	28..843	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZND010000033.1 Salmonella enterica strain PNUSAS392277 SAMN37855494-rid19849363.guided.25, whole genome shotgun sequence	3554..4369	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABNZND010000021.1 Salmonella enterica strain PNUSAS392277 SAMN37855494-rid19849363.denovo.27, whole genome shotgun sequence	947..2146	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZND010000034.1 Salmonella enterica strain PNUSAS392277 SAMN37855494-rid19849363.guided.26, whole genome shotgun sequence	988..2187	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZND010000013.1 Salmonella enterica strain PNUSAS392277 SAMN37855494-rid19849363.denovo.14, whole genome shotgun sequence	32997..33639	enterobacteriales	IncFII(S)	100	262 / 262	ABNZND010000018.1 Salmonella enterica strain PNUSAS392277 SAMN37855494-rid19849363.denovo.21, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	95.76	377 / 377	ABNZND010000017.1 Salmonella enterica strain PNUSAS392277 SAMN37855494-rid19849363.denovo.18, whole genome shotgun sequence	11132..11508																																									avrA	ABNZND010000002.1	552666..553535	99.54	870	0						
GCA_032789925.1_PDT001941721.1_genomic.fna	Salmonella_enterica	0.5194	331.263 KB	6	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZNG010000001.1 Salmonella enterica strain PNUSAS392332 SAMN37855563-rid19848263.denovo.001, whole genome shotgun sequence	563907..564344	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABNZNG010000035.1 Salmonella enterica strain PNUSAS392332 SAMN37855563-rid19848263.denovo.035, whole genome shotgun sequence	5955..6597																																																						avrA	ABNZNG010000004.1	93857..94726	99.77	870	0						
GCA_032789945.1_PDT001941719.1_genomic.fna	Salmonella_enterica	0.5218	317.602 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZNF010000001.1 Salmonella enterica strain PNUSAS392341 SAMN37855571-rid19849353.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZNF010000058.1 Salmonella enterica strain PNUSAS392341 SAMN37855571-rid19849353.guided.13, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032789965.1_PDT001941718.1_genomic.fna	Salmonella_enterica	0.5209	367.11 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZNH010000001.1 Salmonella enterica strain PNUSAS392291 SAMN37855553-rid19848243.denovo.01, whole genome shotgun sequence	383528..383965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZNH010000050.1 Salmonella enterica strain PNUSAS392291 SAMN37855553-rid19848243.guided.32, whole genome shotgun sequence	1722..2159	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZNH010000002.1	504323..505193	99.196	871	0						
GCA_032789985.1_PDT001941716.1_genomic.fna	Salmonella_enterica	0.5205	430.195 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZNJ010000001.1 Salmonella enterica strain PNUSAS392335 SAMN37855566-rid19848223.denovo.01, whole genome shotgun sequence	559728..560165	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZNJ010000030.1 Salmonella enterica strain PNUSAS392335 SAMN37855566-rid19848223.guided.14, whole genome shotgun sequence	33506..33943	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZNJ010000011.1	94851..95719	99.195	870	0						
GCA_032790025.1_PDT001941715.1_genomic.fna	Salmonella_enterica	0.5223	421.251 KB	4	aroC_188,dnaN_112,hemD_121,hisD_14,purE_176,sucA_183,thrA_1	590	3,10:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_188	dnaN	100	100	dnaN_112	hemD	100	100	hemD_121	hisD	100	100	hisD_14	purE	100	100	purE_176	sucA	100	100	sucA_183	thrA	100	100	thrA_1	3,10	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Amsterdam		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZNK010000001.1 Salmonella enterica strain PNUSAS392274 SAMN37855497-rid19848213.denovo.01, whole genome shotgun sequence	721102..721539	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZNK010000028.1 Salmonella enterica strain PNUSAS392274 SAMN37855497-rid19848213.guided.21, whole genome shotgun sequence	16433..16870	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZNK010000006.1	124829..125698	98.851	870	0						
GCA_032790045.1_PDT001941714.1_genomic.fna	Salmonella_enterica	0.5215	593.869 KB	2	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNZNN010000001.1 Salmonella enterica strain PNUSAS392338 SAMN37855569-rid19849343.denovo.01, whole genome shotgun sequence	1339528..1339965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNZNN010000030.1 Salmonella enterica strain PNUSAS392338 SAMN37855569-rid19849343.guided.18, whole genome shotgun sequence	3522..3959	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZNN010000002.1	93992..94861	99.425	870	0						
GCA_032790065.1_PDT001941713.1_genomic.fna	Salmonella_enterica	0.5215	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZNM010000001.1 Salmonella enterica strain PNUSAS392348 SAMN37855542-rid19848203.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZNM010000026.1 Salmonella enterica strain PNUSAS392348 SAMN37855542-rid19848203.guided.21, whole genome shotgun sequence	171..608	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZNM010000013.1 Salmonella enterica strain PNUSAS392348 SAMN37855542-rid19848203.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNZNM010000013.1 Salmonella enterica strain PNUSAS392348 SAMN37855542-rid19848203.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABNZNM010000002.1	553636..554505	99.54	870	0						
GCA_032790085.1_PDT001941707.1_genomic.fna	Salmonella_enterica	0.5213	406.084 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZNL010000001.1 Salmonella enterica strain PNUSAS392265 SAMN37855466-rid19848163.denovo.01, whole genome shotgun sequence	176090..176527	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.33	354/438	ABNZNL010000031.1 Salmonella enterica strain PNUSAS392265 SAMN37855466-rid19848163.guided.29, whole genome shotgun sequence	1..354	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZNL010000017.1 Salmonella enterica strain PNUSAS392265 SAMN37855466-rid19848163.denovo.17, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNZNL010000014.1 Salmonella enterica strain PNUSAS392265 SAMN37855466-rid19848163.denovo.14, whole genome shotgun sequence	3859..4120																																																avrA	ABNZNL010000002.1	552779..553648	99.54	870	0						
GCA_032790105.1_PDT001941705.1_genomic.fna	Salmonella_enterica	0.5223	639.503 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZNO010000001.1 Salmonella enterica strain PNUSAS392288 SAMN37855492-rid19848143.denovo.01, whole genome shotgun sequence	510590..511027	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZNO010000024.1 Salmonella enterica strain PNUSAS392288 SAMN37855492-rid19848143.guided.18, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZNO010000003.1	544276..545144	99.425	870	0						
GCA_032790125.1_PDT001941704.1_genomic.fna	Salmonella_enterica	0.5223	496.46 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZNP010000001.1 Salmonella enterica strain PNUSAS392276 SAMN37855495-rid19849313.denovo.01, whole genome shotgun sequence	790295..790732	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZNP010000029.1 Salmonella enterica strain PNUSAS392276 SAMN37855495-rid19849313.guided.15, whole genome shotgun sequence	30267..30704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZNP010000002.1	183117..183986	98.966	870	0						
GCA_032790145.1_PDT001941702.1_genomic.fna	Salmonella_enterica	0.521	511.827 KB	4	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	3	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,fosA7,fosA7	2	gyrB_p.S464F,parC_p.T57S	3	ColRNAI,IncFIB(pECLA),IncFII(pECLA)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNZNQ010000002.1 Salmonella enterica strain PNUSAS392255 SAMN37855475-rid19849303.denovo.02, whole genome shotgun sequence	383907..384344	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNZNQ010000034.1 Salmonella enterica strain PNUSAS392255 SAMN37855475-rid19849303.guided.23, whole genome shotgun sequence	2414..2851	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABNZNQ010000012.1 Salmonella enterica strain PNUSAS392255 SAMN37855475-rid19849303.denovo.12, whole genome shotgun sequence	38816..39676	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZNQ010000031.1 Salmonella enterica strain PNUSAS392255 SAMN37855475-rid19849303.guided.19, whole genome shotgun sequence	12552..13412	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	fosA7	100	423/423	ABNZNQ010000004.1 Salmonella enterica strain PNUSAS392255 SAMN37855475-rid19849303.denovo.04, whole genome shotgun sequence	274445..274867	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABNZNQ010000032.1 Salmonella enterica strain PNUSAS392255 SAMN37855475-rid19849303.guided.20, whole genome shotgun sequence	9174..9596	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																														gyrB p.S464F	TCT -> TTC	S -> F	Ciprofloxacin	27896141	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	ColRNAI	90.08	131 / 130	ABNZNQ010000019.1 Salmonella enterica strain PNUSAS392255 SAMN37855475-rid19849303.denovo.24, whole genome shotgun sequence	4022..4152	enterobacteriales	IncFIB(pECLA)	100	560 / 560	ABNZNQ010000012.1 Salmonella enterica strain PNUSAS392255 SAMN37855475-rid19849303.denovo.12, whole genome shotgun sequence	20309..20868		enterobacteriales	IncFII(pECLA)	100	747 / 747	ABNZNQ010000012.1 Salmonella enterica strain PNUSAS392255 SAMN37855475-rid19849303.denovo.12, whole genome shotgun sequence	74867..75613																																									avrA	ABNZNQ010000003.1	564256..565125	99.54	870	0						
GCA_032790155.1_PDT001941701.1_genomic.fna	Salmonella_enterica	0.5224	612.578 KB	4	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNZNR010000001.1 Salmonella enterica strain PNUSAS392260 SAMN37855472-rid19848123.denovo.01, whole genome shotgun sequence	750296..750733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNZNR010000032.1 Salmonella enterica strain PNUSAS392260 SAMN37855472-rid19848123.guided.22, whole genome shotgun sequence	5077..5514	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(S)	93.16	643 / 643	ABNZNR010000013.1 Salmonella enterica strain PNUSAS392260 SAMN37855472-rid19848123.denovo.13, whole genome shotgun sequence	65905..66547	enterobacteriales	IncFII(S)	97.34	263 / 262	ABNZNR010000013.1 Salmonella enterica strain PNUSAS392260 SAMN37855472-rid19848123.denovo.13, whole genome shotgun sequence	28759..29018																																																avrA	ABNZNR010000002.1	557262..558130	99.425	870	0						
GCA_032790185.1_PDT001941700.1_genomic.fna	Salmonella_enterica	0.5217	236.155 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZNS010000002.1 Salmonella enterica strain PNUSAS392263 SAMN37855469-rid19848113.denovo.02, whole genome shotgun sequence	68378..68815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZNS010000057.1 Salmonella enterica strain PNUSAS392263 SAMN37855469-rid19848113.guided.40, whole genome shotgun sequence	498..935	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZNS010000018.1 Salmonella enterica strain PNUSAS392263 SAMN37855469-rid19848113.denovo.18, whole genome shotgun sequence	48434..49076	enterobacteriales	IncFII(S)	100	262 / 262	ABNZNS010000018.1 Salmonella enterica strain PNUSAS392263 SAMN37855469-rid19848113.denovo.18, whole genome shotgun sequence	64161..64422		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNZNS010000020.1 Salmonella enterica strain PNUSAS392263 SAMN37855469-rid19848113.denovo.20, whole genome shotgun sequence	68660..68801																																									avrA	ABNZNS010000001.1	477862..478730	100	869	0						
GCA_032790205.1_PDT001941699.1_genomic.fna	Salmonella_enterica	0.5224	397.912 KB	4	aroC_347,dnaN_394,hemD_78,hisD_496,purE_426,sucA_9,thrA_102	1549	8:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_347	dnaN	100	100	dnaN_394	hemD	100	100	hemD_78	hisD	100	100	hisD_496	purE	100	100	purE_426	sucA	100	100	sucA_9	thrA	100	100	thrA_102	8	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Altona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZNT010000001.1 Salmonella enterica strain PNUSAS392292 SAMN37855487-rid19849293.denovo.01, whole genome shotgun sequence	736221..736658	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZNT010000029.1 Salmonella enterica strain PNUSAS392292 SAMN37855487-rid19849293.guided.22, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZNT010000003.1	500532..501401	99.195	870	0						
GCA_032790225.1_PDT001941696.1_genomic.fna	Salmonella_enterica	0.5217	219.532 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZNU010000001.1 Salmonella enterica strain PNUSAS392283 SAMN37855498-rid19848093.denovo.01, whole genome shotgun sequence	233303..233740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZNU010000055.1 Salmonella enterica strain PNUSAS392283 SAMN37855498-rid19848093.guided.40, whole genome shotgun sequence	1694..2131	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZNU010000003.1	208058..208926	99.77	870	0						
GCA_032790245.1_PDT001941688.1_genomic.fna	Salmonella_enterica	0.5214	203.759 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	3	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZNV010000001.1 Salmonella enterica strain PNUSAS392261 SAMN37855471-rid19848023.denovo.01, whole genome shotgun sequence	571110..571547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZNV010000058.1 Salmonella enterica strain PNUSAS392261 SAMN37855471-rid19848023.guided.33, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNZNV010000028.1 Salmonella enterica strain PNUSAS392261 SAMN37855471-rid19848023.denovo.29, whole genome shotgun sequence	11372..12571	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZNV010000057.1 Salmonella enterica strain PNUSAS392261 SAMN37855471-rid19848023.guided.28, whole genome shotgun sequence	11412..12611	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABNZNV010000037.1 Salmonella enterica strain PNUSAS392261 SAMN37855471-rid19848023.denovo.40, whole genome shotgun sequence	1340..1813	Trimethoprim	AF393510	dfrA14	100	474/474	ABNZNV010000060.1 Salmonella enterica strain PNUSAS392261 SAMN37855471-rid19848023.guided.46, whole genome shotgun sequence	1380..1853	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNZNV010000030.1 Salmonella enterica strain PNUSAS392261 SAMN37855471-rid19848023.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABNZNV010000002.1	94091..94960	99.655	870	0						
GCA_032790265.1_PDT001941622.1_genomic.fna	Salmonella_enterica	0.5216	501.826 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZNW010000001.1 Salmonella enterica strain PNUSAS391355 SAMN37855307-rid19846843.denovo.01, whole genome shotgun sequence	596450..596887	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZNW010000024.1 Salmonella enterica strain PNUSAS391355 SAMN37855307-rid19846843.guided.17, whole genome shotgun sequence	7584..8021	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZNW010000003.1	406605..407473	99.425	870	0						
GCA_032790285.1_PDT001941596.1_genomic.fna	Salmonella_enterica	0.5208	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncI(Gamma),IncL	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNZNX010000001.1 Salmonella enterica strain PNUSAS391309 SAMN37855276-rid19847713.denovo.01, whole genome shotgun sequence	717883..718320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNZNX010000020.1 Salmonella enterica strain PNUSAS391309 SAMN37855276-rid19847713.guided.14, whole genome shotgun sequence	9257..9694	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI(Gamma)	100	137 / 141	ABNZNX010000009.1 Salmonella enterica strain PNUSAS391309 SAMN37855276-rid19847713.denovo.09, whole genome shotgun sequence	81162..81298	enterobacteriales	IncL	97.29	664 / 661	ABNZNX010000011.1 Salmonella enterica strain PNUSAS391309 SAMN37855276-rid19847713.denovo.11, whole genome shotgun sequence	25772..26435																																																avrA	ABNZNX010000004.1	160310..161179	99.54	870	0						
GCA_032790305.1_PDT001941529.1_genomic.fna	Salmonella_enterica	0.5198	212.051 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZNZ010000002.1 Salmonella enterica strain PNUSAS392097 SAMN37855149-rid19846273.denovo.02, whole genome shotgun sequence	267840..268277	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZNZ010000050.1 Salmonella enterica strain PNUSAS392097 SAMN37855149-rid19846273.guided.30, whole genome shotgun sequence	24929..25366	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABNZNZ010000023.1 Salmonella enterica strain PNUSAS392097 SAMN37855149-rid19846273.denovo.23, whole genome shotgun sequence	47486..48128																																																																	
GCA_032790325.1_PDT001941580.1_genomic.fna	Salmonella_enterica	0.5168	282.729 KB	7	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABNZNY010000001.1 Salmonella enterica strain PNUSAS391329 SAMN37855234-rid19846593.denovo.01, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABNZNY010000059.1 Salmonella enterica strain PNUSAS391329 SAMN37855234-rid19846593.guided.29, whole genome shotgun sequence	4200..4637	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABNZNY010000011.1 Salmonella enterica strain PNUSAS391329 SAMN37855234-rid19846593.denovo.11, whole genome shotgun sequence	167608..168250																																																																	
GCA_032790345.1_PDT001785680.1_genomic.fna	Salmonella_enterica	0.5213	236.104 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZOD010000002.1 Salmonella enterica strain PNUSAS356811 SAMN35795598-rid18525483.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZOD010000054.1 Salmonella enterica strain PNUSAS356811 SAMN35795598-rid18525483.guided.34, whole genome shotgun sequence	8009..8446	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZOD010000018.1 Salmonella enterica strain PNUSAS356811 SAMN35795598-rid18525483.denovo.18, whole genome shotgun sequence	86328..86970	enterobacteriales	IncFII(S)	100	262 / 262	ABNZOD010000018.1 Salmonella enterica strain PNUSAS356811 SAMN35795598-rid18525483.denovo.18, whole genome shotgun sequence	70982..71243		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNZOD010000019.1 Salmonella enterica strain PNUSAS356811 SAMN35795598-rid18525483.denovo.19, whole genome shotgun sequence	76342..76483																																									avrA	ABNZOD010000005.1	155216..156084	100	869	0						
GCA_032790365.1_PDT001785679.1_genomic.fna	Salmonella_enterica	0.5213	400.834 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZOC010000001.1 Salmonella enterica strain PNUSAS356812 SAMN35795592-rid18528703.denovo.01, whole genome shotgun sequence	293245..293682	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZOC010000030.1 Salmonella enterica strain PNUSAS356812 SAMN35795592-rid18528703.guided.27, whole genome shotgun sequence	378..815	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZOC010000020.1 Salmonella enterica strain PNUSAS356812 SAMN35795592-rid18528703.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNZOC010000021.1 Salmonella enterica strain PNUSAS356812 SAMN35795592-rid18528703.denovo.22, whole genome shotgun sequence	3362..3623																																																avrA	ABNZOC010000009.1	140720..141589	99.54	870	0						
GCA_032790445.1_PDT001785676.1_genomic.fna	Salmonella_enterica	0.5213	341.38 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZOH010000002.1 Salmonella enterica strain PNUSAS356813 SAMN35795596-rid18520903.denovo.02, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZOH010000043.1 Salmonella enterica strain PNUSAS356813 SAMN35795596-rid18520903.guided.33, whole genome shotgun sequence	5246..5683	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZOH010000003.1	402322..403190	100	869	0						
GCA_032790465.1_PDT001785677.1_genomic.fna	Salmonella_enterica	0.5222	496.405 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZOG010000001.1 Salmonella enterica strain PNUSAS356814 SAMN35795595-rid18528693.denovo.01, whole genome shotgun sequence	454798..455235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZOG010000024.1 Salmonella enterica strain PNUSAS356814 SAMN35795595-rid18528693.guided.16, whole genome shotgun sequence	5272..5709	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZOG010000002.1	194812..195681	98.966	870	0						
GCA_032790475.1_PDT001785678.1_genomic.fna	Salmonella_enterica	0.5213	538.604 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZOF010000001.1 Salmonella enterica strain PNUSAS356817 SAMN35795597-rid18527123.denovo.01, whole genome shotgun sequence	551474..551911	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZOF010000024.1 Salmonella enterica strain PNUSAS356817 SAMN35795597-rid18527123.guided.21, whole genome shotgun sequence	3258..3695	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZOF010000002.1	579859..580727	99.425	870	0						
GCA_032790505.1_PDT001785674.1_genomic.fna	Salmonella_enterica	0.5215	315.973 KB	6	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZOM010000001.1 Salmonella enterica strain PNUSAS356815 SAMN35795594-rid18527113.denovo.01, whole genome shotgun sequence	133775..134212	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNZOM010000028.1 Salmonella enterica strain PNUSAS356815 SAMN35795594-rid18527113.denovo.29, whole genome shotgun sequence	1604..1734																																																																	
GCA_032790525.1_PDT001785675.1_genomic.fna	Salmonella_enterica	0.5219	265.513 KB	6	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNZOI010000001.1 Salmonella enterica strain PNUSAS356816 SAMN35795593-rid18523873.denovo.01, whole genome shotgun sequence	136919..137356	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNZOI010000048.1 Salmonella enterica strain PNUSAS356816 SAMN35795593-rid18523873.guided.32, whole genome shotgun sequence	10346..10783	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZOI010000010.1	101941..102810	99.655	870	0						
GCA_032790985.1_PDT001941858.1_genomic.fna	Salmonella_enterica	0.5219	200.156 KB	7	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNZPF010000001.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325735 SAMN37855988-rid19849073.denovo.01, whole genome shotgun sequence	492161..492598	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNZPF010000044.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325735 SAMN37855988-rid19849073.guided.26, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZPF010000005.1	156341..157209	99.655	869	0						
GCA_032791005.1_PDT001941854.1_genomic.fna	Salmonella_enterica	0.5224	89.643 KB	19	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	7	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,qnrB19,qnrB19,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	Col(pHAD28),IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZPG010000012.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325734 SAMN37855987-rid19849903.denovo.012, whole genome shotgun sequence	15507..15944	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZPG010000107.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325734 SAMN37855987-rid19849903.guided.070, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABNZPG010000077.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325734 SAMN37855987-rid19849903.denovo.081, whole genome shotgun sequence	10066..10971	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNZPG010000109.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325734 SAMN37855987-rid19849903.guided.080, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNZPG010000089.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325734 SAMN37855987-rid19849903.denovo.093, whole genome shotgun sequence	615..1828	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNZPG010000110.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325734 SAMN37855987-rid19849903.guided.095, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABNZPG010000091.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325734 SAMN37855987-rid19849903.denovo.096, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNZPG010000111.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325734 SAMN37855987-rid19849903.guided.102, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul1	100	840/840	ABNZPG010000077.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325734 SAMN37855987-rid19849903.denovo.081, whole genome shotgun sequence	3916..4755	Sulfamethoxazole	U12338	sul1	100	840/840	ABNZPG010000109.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325734 SAMN37855987-rid19849903.guided.080, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1240/1275	ABNZPG010000077.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325734 SAMN37855987-rid19849903.denovo.081, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNZPG010000109.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325734 SAMN37855987-rid19849903.guided.080, whole genome shotgun sequence	9840..11114	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNZPG010000077.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325734 SAMN37855987-rid19849903.denovo.081, whole genome shotgun sequence	2398..2871	Trimethoprim	X00926	dfrA1	100	474/474	ABNZPG010000109.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325734 SAMN37855987-rid19849903.guided.080, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNZPG010000091.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325734 SAMN37855987-rid19849903.denovo.096, whole genome shotgun sequence	1522..1652	enterobacteriales	IncR	100	251 / 251	ABNZPG010000072.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325734 SAMN37855987-rid19849903.denovo.075, whole genome shotgun sequence	8402..8652																																																avrA	ABNZPG010000003.1	139223..140092	99.77	870	0						
GCA_032791025.1_PDT001941848.1_genomic.fna	Salmonella_enterica	0.5215	235.224 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZPH010000001.1 Salmonella enterica strain 23MO09CL01-S1 SAMN37855977-rid19849013.denovo.01, whole genome shotgun sequence	575032..575469	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNZPH010000028.1 Salmonella enterica strain 23MO09CL01-S1 SAMN37855977-rid19849013.denovo.29, whole genome shotgun sequence	1235..2026	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZPH010000028.1 Salmonella enterica strain 23MO09CL01-S1 SAMN37855977-rid19849013.denovo.29, whole genome shotgun sequence	1235..2026	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABNZPH010000050.1 Salmonella enterica strain 23MO09CL01-S1 SAMN37855977-rid19849013.guided.31, whole genome shotgun sequence	9830..10267	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNZPH010000054.1 Salmonella enterica strain 23MO09CL01-S1 SAMN37855977-rid19849013.guided.46, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZPH010000054.1 Salmonella enterica strain 23MO09CL01-S1 SAMN37855977-rid19849013.guided.46, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABNZPH010000028.1 Salmonella enterica strain 23MO09CL01-S1 SAMN37855977-rid19849013.denovo.29, whole genome shotgun sequence	2531..3370	Sulfamethoxazole	U12338	sul1	100	840/840	ABNZPH010000052.1 Salmonella enterica strain 23MO09CL01-S1 SAMN37855977-rid19849013.guided.35, whole genome shotgun sequence	13..852	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNZPH010000028.1 Salmonella enterica strain 23MO09CL01-S1 SAMN37855977-rid19849013.denovo.29, whole genome shotgun sequence	15887..17086	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZPH010000052.1 Salmonella enterica strain 23MO09CL01-S1 SAMN37855977-rid19849013.guided.35, whole genome shotgun sequence	13369..14568	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNZPH010000033.1 Salmonella enterica strain 23MO09CL01-S1 SAMN37855977-rid19849013.denovo.37, whole genome shotgun sequence	9109..9668																																																						avrA	ABNZPH010000005.1	60549..61418	99.655	870	0						
GCA_032791045.1_PDT001941796.1_genomic.fna	Salmonella_enterica	0.5215	194.306 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZPK010000001.1 Salmonella enterica strain PNUSAS392353 SAMN37855878-rid19849673.denovo.01, whole genome shotgun sequence	214879..215316	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZPK010000058.1 Salmonella enterica strain PNUSAS392353 SAMN37855878-rid19849673.guided.43, whole genome shotgun sequence	1859..2296	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZPK010000020.1 Salmonella enterica strain PNUSAS392353 SAMN37855878-rid19849673.denovo.20, whole genome shotgun sequence	44850..45492	enterobacteriales	IncFII(S)	100	262 / 262	ABNZPK010000020.1 Salmonella enterica strain PNUSAS392353 SAMN37855878-rid19849673.denovo.20, whole genome shotgun sequence	29504..29765																																																avrA	ABNZPK010000002.1	208826..209695	99.885	870	0						
GCA_032791065.1_PDT001941801.1_genomic.fna	Salmonella_enterica	0.5214	367.696 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNZPI010000001.1 Salmonella enterica strain PNUSAS392194 SAMN37855894-rid19849703.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNZPI010000026.1 Salmonella enterica strain PNUSAS392194 SAMN37855894-rid19849703.guided.16, whole genome shotgun sequence	12387..12824	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNZPI010000019.1 Salmonella enterica strain PNUSAS392194 SAMN37855894-rid19849703.denovo.22, whole genome shotgun sequence	239..369																																																						avrA	ABNZPI010000005.1	140114..140983	99.425	870	0						
GCA_032791085.1_PDT001941793.1_genomic.fna	Salmonella_enterica	0.5216	191.426 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZPJ010000001.1 Salmonella enterica strain PNUSAS392187 SAMN37855895-rid19848673.denovo.01, whole genome shotgun sequence	381670..382107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZPJ010000046.1 Salmonella enterica strain PNUSAS392187 SAMN37855895-rid19848673.guided.32, whole genome shotgun sequence	748..1185	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZPJ010000011.1	94133..95001	99.77	870	0						
GCA_032791105.1_PDT001941762.1_genomic.fna	Salmonella_enterica	0.5217	609.106 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZPM010000001.1 Salmonella enterica strain PNUSAS392316 SAMN37855791-rid19849503.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZPM010000022.1 Salmonella enterica strain PNUSAS392316 SAMN37855791-rid19849503.guided.15, whole genome shotgun sequence	36444..36881	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZPM010000002.1	514241..515111	99.656	871	0						
GCA_032791115.1_PDT001941784.1_genomic.fna	Salmonella_enterica	0.5203	489.863 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZPL010000001.1 Salmonella enterica strain PNUSAS392195 SAMN37855870-rid19849623.denovo.01, whole genome shotgun sequence	774432..774869	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZPL010000028.1 Salmonella enterica strain PNUSAS392195 SAMN37855870-rid19849623.guided.18, whole genome shotgun sequence	24917..25354	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZPL010000013.1 Salmonella enterica strain PNUSAS392195 SAMN37855870-rid19849623.denovo.13, whole genome shotgun sequence	40536..41178	enterobacteriales	IncFII(S)	100	262 / 262	ABNZPL010000018.1 Salmonella enterica strain PNUSAS392195 SAMN37855870-rid19849623.denovo.21, whole genome shotgun sequence	3403..3664		enterobacteriales	IncX1	98.93	374 / 374	ABNZPL010000015.1 Salmonella enterica strain PNUSAS392195 SAMN37855870-rid19849623.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABNZPL010000002.1	553684..554553	99.54	870	0						
GCA_032791185.1_PDT001941730.1_genomic.fna	Salmonella_enterica	0.5211	465.321 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZPR010000001.1 Salmonella enterica strain PNUSAS392286 SAMN37855483-rid19848323.denovo.01, whole genome shotgun sequence	815076..815513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZPR010000025.1 Salmonella enterica strain PNUSAS392286 SAMN37855483-rid19848323.guided.19, whole genome shotgun sequence	2719..3156	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZPR010000018.1 Salmonella enterica strain PNUSAS392286 SAMN37855483-rid19848323.denovo.20, whole genome shotgun sequence	6724..7366	enterobacteriales	IncFII(S)	100	262 / 262	ABNZPR010000019.1 Salmonella enterica strain PNUSAS392286 SAMN37855483-rid19848323.denovo.22, whole genome shotgun sequence	3403..3664																																																avrA	ABNZPR010000002.1	553183..554052	99.54	870	0						
GCA_032791225.1_PDT001941750.1_genomic.fna	Salmonella_enterica	0.5229	444.116 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZPO010000001.1 Salmonella enterica strain PNUSAS392347 SAMN37855541-rid19848463.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZPO010000031.1 Salmonella enterica strain PNUSAS392347 SAMN37855541-rid19848463.guided.26, whole genome shotgun sequence	3231..3668	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZPO010000002.1	149828..150697	99.655	870	0						
GCA_032791625.1_PDT001785622.1_genomic.fna	Salmonella_enterica	0.5214	480.934 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZQN010000001.1 Salmonella enterica strain PNUSAS356810 SAMN35795075-rid18528643.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZQN010000026.1 Salmonella enterica strain PNUSAS356810 SAMN35795075-rid18528643.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZQN010000018.1 Salmonella enterica strain PNUSAS356810 SAMN35795075-rid18528643.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABNZQN010000015.1 Salmonella enterica strain PNUSAS356810 SAMN35795075-rid18528643.denovo.15, whole genome shotgun sequence	37108..37369																																																avrA	ABNZQN010000002.1	553076..553945	99.54	870	0						
GCA_032791765.1_PDT001941870.1_genomic.fna	Salmonella_enterica	0.5186	168.282 KB	9	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZQO010000015.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325755 SAMN37856156-rid19849153.denovo.15, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZQO010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325755 SAMN37856156-rid19849153.denovo.52, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNZQO010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325755 SAMN37856156-rid19849153.denovo.52, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNZQO010000075.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325755 SAMN37856156-rid19849153.guided.37, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZQO010000076.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325755 SAMN37856156-rid19849153.guided.55, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABNZQO010000076.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325755 SAMN37856156-rid19849153.guided.55, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNZQO010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325755 SAMN37856156-rid19849153.denovo.51, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZQO010000077.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325755 SAMN37856156-rid19849153.guided.56, whole genome shotgun sequence	3582..4787	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNZQO010000036.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325755 SAMN37856156-rid19849153.denovo.39, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNZQO010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325755 SAMN37856156-rid19849153.denovo.52, whole genome shotgun sequence	1831..2092		enterobacteriales	IncFII	96.95	262 / 261	ABNZQO010000076.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325755 SAMN37856156-rid19849153.guided.55, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABNZQO010000030.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325755 SAMN37856156-rid19849153.denovo.32, whole genome shotgun sequence	33445..33586		enterobacteriales	IncX1	100	373 / 373	ABNZQO010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325755 SAMN37856156-rid19849153.denovo.50, whole genome shotgun sequence	2153..2525																											avrA	ABNZQO010000028.1	39484..40353	99.655	870	0						
GCA_032791805.1_PDT001941769.1_genomic.fna	Salmonella_enterica	0.5208	261.582 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZQT010000002.1 Salmonella enterica strain PNUSAS392174 SAMN37855861-rid19849543.denovo.02, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZQT010000044.1 Salmonella enterica strain PNUSAS392174 SAMN37855861-rid19849543.guided.20, whole genome shotgun sequence	44294..44731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZQT010000020.1 Salmonella enterica strain PNUSAS392174 SAMN37855861-rid19849543.denovo.21, whole genome shotgun sequence	2806..3339																																																						avrA	ABNZQT010000009.1	188016..188885	99.425	870	0						
GCA_032792365.1_PDT001785560.1_genomic.fna	Salmonella_enterica	0.5211	469.739 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZRX010000001.1 Salmonella enterica strain PNUSAS356706 SAMN35794410-rid18530113.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZRX010000028.1 Salmonella enterica strain PNUSAS356706 SAMN35794410-rid18530113.guided.16, whole genome shotgun sequence	9889..10326	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZRX010000015.1 Salmonella enterica strain PNUSAS356706 SAMN35794410-rid18530113.denovo.15, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABNZRX010000015.1 Salmonella enterica strain PNUSAS356706 SAMN35794410-rid18530113.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNZRX010000008.1	174628..175497	99.54	870	0						
GCA_032792385.1_PDT001785559.1_genomic.fna	Salmonella_enterica	0.5213	478.438 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZRY010000001.1 Salmonella enterica strain PNUSAS356712 SAMN35794397-rid18516983.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZRY010000025.1 Salmonella enterica strain PNUSAS356712 SAMN35794397-rid18516983.guided.18, whole genome shotgun sequence	2571..3008	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZRY010000014.1 Salmonella enterica strain PNUSAS356712 SAMN35794397-rid18516983.denovo.15, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABNZRY010000014.1 Salmonella enterica strain PNUSAS356712 SAMN35794397-rid18516983.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABNZRY010000002.1	553052..553921	99.54	870	0						
GCA_032792405.1_PDT001785561.1_genomic.fna	Salmonella_enterica	0.5217	341.902 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZRW010000004.1 Salmonella enterica strain PNUSAS356720 SAMN35794409-rid18520793.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZRW010000059.1 Salmonella enterica strain PNUSAS356720 SAMN35794409-rid18520793.guided.26, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZRW010000013.1 Salmonella enterica strain PNUSAS356720 SAMN35794409-rid18520793.denovo.13, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNZRW010000013.1 Salmonella enterica strain PNUSAS356720 SAMN35794409-rid18520793.denovo.13, whole genome shotgun sequence	30407..30668																																																avrA	ABNZRW010000003.1	401381..402249	100	869	0						
GCA_032792425.1_PDT001785558.1_genomic.fna	Salmonella_enterica	0.5135	135.206 KB	8	aroC_65,dnaN_451,hemD_29,hisD_312,purE_20,sucA_26,thrA_60	2765	48:g,z51:-	0		1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_65	dnaN	100	100	dnaN_451	hemD	100	100	hemD_29	hisD	100	100	hisD_312	purE	100	100	purE_20	sucA	100	100	sucA_26	thrA	100	100	thrA_60	48	g,z51	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 48:g,z51:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABNZRZ010000024.1 Salmonella enterica strain PNUSAS356714 SAMN35794407-rid18525383.denovo.25, whole genome shotgun sequence	3666..3927																																																																	
GCA_032792445.1_PDT001785557.1_genomic.fna	Salmonella_enterica	0.5217	217.971 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZSA010000001.1 Salmonella enterica strain PNUSAS356719 SAMN35794398-rid18528583.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZSA010000039.1 Salmonella enterica strain PNUSAS356719 SAMN35794398-rid18528583.guided.25, whole genome shotgun sequence	21880..22317	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNZSA010000021.1 Salmonella enterica strain PNUSAS356719 SAMN35794398-rid18528583.denovo.22, whole genome shotgun sequence	15752..16285																																																						avrA	ABNZSA010000002.1	39349..40218	99.655	870	0						
GCA_032792465.1_PDT001785556.1_genomic.fna	Salmonella_enterica	0.5226	332.886 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZSB010000002.1 Salmonella enterica strain PNUSAS356709 SAMN35794403-rid18526953.denovo.02, whole genome shotgun sequence	180564..181001	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZSB010000036.1 Salmonella enterica strain PNUSAS356709 SAMN35794403-rid18526953.guided.21, whole genome shotgun sequence	23653..24090	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABNZSB010000026.1 Salmonella enterica strain PNUSAS356709 SAMN35794403-rid18526953.denovo.29, whole genome shotgun sequence	4021..4151																																																						avrA	ABNZSB010000001.1	149600..150469	99.655	870	0						
GCA_032792485.1_PDT001785555.1_genomic.fna	Salmonella_enterica	0.5212	405.804 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZSE010000004.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.denovo.04, whole genome shotgun sequence	159296..159733	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZSE010000021.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.denovo.21, whole genome shotgun sequence	31616..32452	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZSE010000021.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.denovo.21, whole genome shotgun sequence	30813..31616	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNZSE010000030.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.denovo.37, whole genome shotgun sequence	137..952	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aph(6)-Id	100	837/837	ABNZSE010000036.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.guided.22, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZSE010000036.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.guided.22, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNZSE010000039.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.guided.27, whole genome shotgun sequence	1723..2160	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNZSE010000042.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.guided.36, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	blaCMY-2	100	1146/1146	ABNZSE010000021.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.denovo.21, whole genome shotgun sequence	451..1596	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNZSE010000026.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.denovo.30, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNZSE010000026.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.denovo.30, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNZSE010000026.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.denovo.30, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABNZSE010000036.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.guided.22, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABNZSE010000041.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.guided.33, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABNZSE010000041.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.guided.33, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABNZSE010000041.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.guided.33, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABNZSE010000021.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.denovo.21, whole genome shotgun sequence	35588..36801	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNZSE010000040.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNZSE010000021.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.denovo.21, whole genome shotgun sequence	29937..30752	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZSE010000036.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.guided.22, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNZSE010000021.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.denovo.21, whole genome shotgun sequence	33713..34987	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNZSE010000036.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.guided.22, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																														gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNZSE010000019.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.denovo.19, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNZSE010000016.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.denovo.16, whole genome shotgun sequence	63391..63650		enterobacteriales	IncX1	98.66	374 / 374	ABNZSE010000016.1 Salmonella enterica strain PNUSAS356711 SAMN35794396-rid18528573.denovo.16, whole genome shotgun sequence	24683..25056																																									avrA	ABNZSE010000001.1	505455..506323	99.54	870	0						
GCA_032792505.1_PDT001785554.1_genomic.fna	Salmonella_enterica	0.5219	192.787 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZSC010000001.1 Salmonella enterica strain PNUSAS356717 SAMN35794400-rid18519433.denovo.01, whole genome shotgun sequence	145071..145508	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZSC010000068.1 Salmonella enterica strain PNUSAS356717 SAMN35794400-rid18519433.guided.40, whole genome shotgun sequence	15396..15833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZSC010000014.1 Salmonella enterica strain PNUSAS356717 SAMN35794400-rid18519433.denovo.14, whole genome shotgun sequence	36050..36692	enterobacteriales	IncFII(S)	100	262 / 262	ABNZSC010000014.1 Salmonella enterica strain PNUSAS356717 SAMN35794400-rid18519433.denovo.14, whole genome shotgun sequence	51777..52038																																																avrA	ABNZSC010000002.1	450678..451547	99.885	870	0						
GCA_032792525.1_PDT001785553.1_genomic.fna	Salmonella_enterica	0.5214	324.796 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZSD010000003.1 Salmonella enterica strain PNUSAS356718 SAMN35794399-rid18523733.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZSD010000050.1 Salmonella enterica strain PNUSAS356718 SAMN35794399-rid18523733.guided.32, whole genome shotgun sequence	11058..11495	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABNZSD010000025.1 Salmonella enterica strain PNUSAS356718 SAMN35794399-rid18523733.denovo.25, whole genome shotgun sequence	15335..16534	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZSD010000048.1 Salmonella enterica strain PNUSAS356718 SAMN35794399-rid18523733.guided.27, whole genome shotgun sequence	17899..19098	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	100	643 / 643	ABNZSD010000016.1 Salmonella enterica strain PNUSAS356718 SAMN35794399-rid18523733.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNZSD010000016.1 Salmonella enterica strain PNUSAS356718 SAMN35794399-rid18523733.denovo.16, whole genome shotgun sequence	30407..30668		enterobacteriales	IncN	100	514 / 514	ABNZSD010000035.1 Salmonella enterica strain PNUSAS356718 SAMN35794399-rid18523733.denovo.39, whole genome shotgun sequence	399..912																																									avrA	ABNZSD010000002.1	401270..402138	100	869	0						
GCA_032792545.1_PDT001785552.1_genomic.fna	Salmonella_enterica	0.5196	362.291 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_503,thrA_4	2394	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_503	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZSF010000001.1 Salmonella enterica strain PNUSAS356710 SAMN35794402-rid18531393.denovo.01, whole genome shotgun sequence	153505..153942	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZSF010000034.1 Salmonella enterica strain PNUSAS356710 SAMN35794402-rid18531393.guided.22, whole genome shotgun sequence	7486..7923	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZSF010000003.1	395107..395975	99.425	870	0						
GCA_032792565.1_PDT001785550.1_genomic.fna	Salmonella_enterica	0.5214	223.105 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	ColRNAI,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZSI010000002.1 Salmonella enterica strain PNUSAS356716 SAMN35794401-rid18530103.denovo.02, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZSI010000050.1 Salmonella enterica strain PNUSAS356716 SAMN35794401-rid18530103.guided.27, whole genome shotgun sequence	35230..35667	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.83	109 / 130	ABNZSI010000035.1 Salmonella enterica strain PNUSAS356716 SAMN35794401-rid18530103.denovo.38, whole genome shotgun sequence	1011..1119	enterobacteriales	IncFIB(S)	100	643 / 643	ABNZSI010000017.1 Salmonella enterica strain PNUSAS356716 SAMN35794401-rid18530103.denovo.17, whole genome shotgun sequence	14681..15323		enterobacteriales	IncFII(S)	100	262 / 262	ABNZSI010000017.1 Salmonella enterica strain PNUSAS356716 SAMN35794401-rid18530103.denovo.17, whole genome shotgun sequence	30408..30669		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNZSI010000018.1 Salmonella enterica strain PNUSAS356716 SAMN35794401-rid18530103.denovo.18, whole genome shotgun sequence	76549..76690																																		avrA	ABNZSI010000009.1	39477..40345	100	869	0						
GCA_032792585.1_PDT001785551.1_genomic.fna	Salmonella_enterica	0.5212	227.992 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZSG010000004.1 Salmonella enterica strain PNUSAS356707 SAMN35794405-rid18520783.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZSG010000052.1 Salmonella enterica strain PNUSAS356707 SAMN35794405-rid18520783.guided.22, whole genome shotgun sequence	23886..24323	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZSG010000014.1 Salmonella enterica strain PNUSAS356707 SAMN35794405-rid18520783.denovo.14, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNZSG010000014.1 Salmonella enterica strain PNUSAS356707 SAMN35794405-rid18520783.denovo.14, whole genome shotgun sequence	30407..30668		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABNZSG010000018.1 Salmonella enterica strain PNUSAS356707 SAMN35794405-rid18520783.denovo.18, whole genome shotgun sequence	66857..66998																																									avrA	ABNZSG010000008.1	39588..40456	100	869	0						
GCA_032792605.1_PDT001785549.1_genomic.fna	Salmonella_enterica	0.5194	385.904 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZSK010000001.1 Salmonella enterica strain PNUSAS356713 SAMN35794408-rid18517793.denovo.01, whole genome shotgun sequence	149446..149883	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZSK010000036.1 Salmonella enterica strain PNUSAS356713 SAMN35794408-rid18517793.guided.17, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032792625.1_PDT001785548.1_genomic.fna	Salmonella_enterica	0.5205	423.059 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZSJ010000004.1 Salmonella enterica strain PNUSAS356715 SAMN35794406-rid18525373.denovo.04, whole genome shotgun sequence	162573..163010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZSJ010000036.1 Salmonella enterica strain PNUSAS356715 SAMN35794406-rid18525373.guided.28, whole genome shotgun sequence	1805..2242	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZSJ010000019.1 Salmonella enterica strain PNUSAS356715 SAMN35794406-rid18525373.denovo.19, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABNZSJ010000019.1 Salmonella enterica strain PNUSAS356715 SAMN35794406-rid18525373.denovo.19, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABNZSJ010000021.1 Salmonella enterica strain PNUSAS356715 SAMN35794406-rid18525373.denovo.21, whole genome shotgun sequence	32011..32384																																									avrA	ABNZSJ010000014.1	39366..40235	99.54	870	0						
GCA_032792665.1_PDT001785547.1_genomic.fna	Salmonella_enterica	0.5232	340.305 KB	6	aroC_2,dnaN_2,hemD_3,hisD_643,purE_2,sucA_2,thrA_6	2412	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_643	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNZSL010000001.1 Salmonella enterica strain PNUSAS356708 SAMN35794404-rid18528563.denovo.01, whole genome shotgun sequence	293528..293965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNZSL010000028.1 Salmonella enterica strain PNUSAS356708 SAMN35794404-rid18528563.guided.24, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZSL010000004.1	406307..407175	99.425	870	0						
GCA_032792745.1_PDT001941995.1_genomic.fna	Salmonella_enterica	0.5216	758.879 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZSP010000001.1 Salmonella enterica strain PNUSAS392639 SAMN37857386-rid19850933.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZSP010000027.1 Salmonella enterica strain PNUSAS392639 SAMN37857386-rid19850933.guided.16, whole genome shotgun sequence	19942..20379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZSP010000004.1	401365..402234	99.655	870	0						
GCA_032792765.1_PDT001941993.1_genomic.fna	Salmonella_enterica	0.5205	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	Col(MG828),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZSQ010000001.1 Salmonella enterica strain PNUSAS392634 SAMN37857378-rid19850923.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZSQ010000026.1 Salmonella enterica strain PNUSAS392634 SAMN37857378-rid19850923.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(MG828)	94.27	262 / 262	ABNZSQ010000022.1 Salmonella enterica strain PNUSAS392634 SAMN37857378-rid19850923.denovo.25, whole genome shotgun sequence	428..689	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZSQ010000015.1 Salmonella enterica strain PNUSAS392634 SAMN37857378-rid19850923.denovo.17, whole genome shotgun sequence	49285..49927		enterobacteriales	IncFII(S)	100	262 / 262	ABNZSQ010000015.1 Salmonella enterica strain PNUSAS392634 SAMN37857378-rid19850923.denovo.17, whole genome shotgun sequence	5032..5293																																									avrA	ABNZSQ010000002.1	553312..554181	99.54	870	0						
GCA_032792785.1_PDT001941991.1_genomic.fna	Salmonella_enterica	0.5207	321.351 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(MG828)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZSR010000001.1 Salmonella enterica strain PNUSAS392636 SAMN37857384-rid19850903.denovo.01, whole genome shotgun sequence	498133..498570	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZSR010000035.1 Salmonella enterica strain PNUSAS392636 SAMN37857384-rid19850903.guided.14, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(MG828)	94.27	262 / 262	ABNZSR010000028.1 Salmonella enterica strain PNUSAS392636 SAMN37857384-rid19850903.denovo.31, whole genome shotgun sequence	428..689																																																						avrA	ABNZSR010000008.1	140447..141316	99.425	870	0						
GCA_032792805.1_PDT001941992.1_genomic.fna	Salmonella_enterica	0.5216	229.212 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZSS010000001.1 Salmonella enterica strain PNUSAS392637 SAMN37857383-rid19850913.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZSS010000034.1 Salmonella enterica strain PNUSAS392637 SAMN37857383-rid19850913.guided.16, whole genome shotgun sequence	21200..21637	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZSS010000003.1	39604..40473	99.655	870	0						
GCA_032792825.1_PDT001941990.1_genomic.fna	Salmonella_enterica	0.5209	592.02 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(MG828)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZST010000001.1 Salmonella enterica strain PNUSAS392642 SAMN37857380-rid19850893.denovo.01, whole genome shotgun sequence	408805..409242	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZST010000027.1 Salmonella enterica strain PNUSAS392642 SAMN37857380-rid19850893.guided.13, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(MG828)	94.27	262 / 262	ABNZST010000023.1 Salmonella enterica strain PNUSAS392642 SAMN37857380-rid19850893.denovo.26, whole genome shotgun sequence	428..689																																																						avrA	ABNZST010000003.1	496799..497667	99.425	870	0						
GCA_032792845.1_PDT001941985.1_genomic.fna	Salmonella_enterica	0.5207	695.716 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZSW010000001.1 Salmonella enterica strain PNUSAS392494 SAMN37857293-rid19850853.denovo.01, whole genome shotgun sequence	414979..415416	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZSW010000022.1 Salmonella enterica strain PNUSAS392494 SAMN37857293-rid19850853.guided.16, whole genome shotgun sequence	5661..6098	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032792865.1_PDT001941987.1_genomic.fna	Salmonella_enterica	0.5206	396.077 KB	5	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNZSV010000002.1 Salmonella enterica strain PNUSAS392640 SAMN37857379-rid19850873.denovo.02, whole genome shotgun sequence	307821..308258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNZSV010000032.1 Salmonella enterica strain PNUSAS392640 SAMN37857379-rid19850873.guided.20, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032792885.1_PDT001941989.1_genomic.fna	Salmonella_enterica	0.5195	651.416 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZSU010000001.1 Salmonella enterica strain PNUSAS392644 SAMN37857382-rid19851113.denovo.01, whole genome shotgun sequence	255063..255500	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZSU010000025.1 Salmonella enterica strain PNUSAS392644 SAMN37857382-rid19851113.guided.08, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZSU010000003.1	556194..557062	99.425	870	0						
GCA_032792905.1_PDT001941983.1_genomic.fna	Salmonella_enterica	0.5206	402.836 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZSX010000001.1 Salmonella enterica strain PNUSAS392499 SAMN37857295-rid19850833.denovo.01, whole genome shotgun sequence	414675..415112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZSX010000024.1 Salmonella enterica strain PNUSAS392499 SAMN37857295-rid19850833.guided.13, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032792925.1_PDT001941982.1_genomic.fna	Salmonella_enterica	0.5212	736.601 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZSY010000001.1 Salmonella enterica strain PNUSAS392501 SAMN37857291-rid19850823.denovo.01, whole genome shotgun sequence	651267..651704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZSY010000016.1 Salmonella enterica strain PNUSAS392501 SAMN37857291-rid19850823.guided.07, whole genome shotgun sequence	21210..21647	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNZSY010000012.1 Salmonella enterica strain PNUSAS392501 SAMN37857291-rid19850823.denovo.15, whole genome shotgun sequence	1480..1610																																																						avrA	ABNZSY010000002.1	560906..561776	99.656	871	0						
GCA_032792945.1_PDT001941981.1_genomic.fna	Salmonella_enterica	0.5203	445.89 KB	4	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABNZTA010000001.1 Salmonella enterica strain PNUSAS392496 SAMN37857288-rid19850813.denovo.01, whole genome shotgun sequence	256082..256519	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABNZTA010000029.1 Salmonella enterica strain PNUSAS392496 SAMN37857288-rid19850813.guided.19, whole genome shotgun sequence	2681..3118	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.38	643 / 643	ABNZTA010000011.1 Salmonella enterica strain PNUSAS392496 SAMN37857288-rid19850813.denovo.11, whole genome shotgun sequence	26887..27529																																																						avrA	ABNZTA010000003.1	496440..497308	99.425	870	0						
GCA_032792965.1_PDT001941978.1_genomic.fna	Salmonella_enterica	0.5215	737.084 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZSZ010000001.1 Salmonella enterica strain PNUSAS392503 SAMN37857292-rid19850793.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZSZ010000015.1 Salmonella enterica strain PNUSAS392503 SAMN37857292-rid19850793.guided.07, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZSZ010000002.1	561446..562316	99.656	871	0						
GCA_032792985.1_PDT001941974.1_genomic.fna	Salmonella_enterica	0.5221	415.927 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCoo)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZTB010000001.1 Salmonella enterica strain PNUSAS392502 SAMN37857243-rid19850753.denovo.01, whole genome shotgun sequence	573909..574346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZTB010000032.1 Salmonella enterica strain PNUSAS392502 SAMN37857243-rid19850753.guided.14, whole genome shotgun sequence	4505..4942	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCoo)	98.09	262 / 262	ABNZTB010000016.1 Salmonella enterica strain PNUSAS392502 SAMN37857243-rid19850753.denovo.17, whole genome shotgun sequence	37021..37282																																																						avrA	ABNZTB010000004.1	39524..40393	99.655	870	0						
GCA_032793005.1_PDT001941973.1_genomic.fna	Salmonella_enterica	0.5194	489.501 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZTC010000001.1 Salmonella enterica strain PNUSAS392495 SAMN37857245-rid19850743.denovo.01, whole genome shotgun sequence	267432..267869	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZTC010000019.1 Salmonella enterica strain PNUSAS392495 SAMN37857245-rid19850743.guided.12, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZTC010000003.1	174827..175696	99.77	870	0						
GCA_032793025.1_PDT001941970.1_genomic.fna	Salmonella_enterica	0.5213	421.397 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZTD010000001.1 Salmonella enterica strain PNUSAS392485 SAMN37857229-rid19850713.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZTD010000026.1 Salmonella enterica strain PNUSAS392485 SAMN37857229-rid19850713.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZTD010000019.1 Salmonella enterica strain PNUSAS392485 SAMN37857229-rid19850713.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABNZTD010000020.1 Salmonella enterica strain PNUSAS392485 SAMN37857229-rid19850713.denovo.23, whole genome shotgun sequence	3401..3662																																																avrA	ABNZTD010000002.1	175197..176066	99.54	870	0						
GCA_032793045.1_PDT001941966.1_genomic.fna	Salmonella_enterica	0.5228	375.53 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZTE010000001.1 Salmonella enterica strain PNUSAS392476 SAMN37857231-rid19850693.denovo.01, whole genome shotgun sequence	573968..574405	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZTE010000028.1 Salmonella enterica strain PNUSAS392476 SAMN37857231-rid19850693.guided.23, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZTE010000003.1	150078..150947	99.655	870	0						
GCA_032793065.1_PDT001941958.1_genomic.fna	Salmonella_enterica	0.5202	311.613 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZTG010000001.1 Salmonella enterica strain PNUSAS392458 SAMN37857136-rid19850623.denovo.01, whole genome shotgun sequence	366317..366754	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZTG010000031.1 Salmonella enterica strain PNUSAS392458 SAMN37857136-rid19850623.guided.15, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZTG010000012.1	140169..141037	99.195	870	0						
GCA_032793085.1_PDT001941959.1_genomic.fna	Salmonella_enterica	0.5208	764.759 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZTF010000001.1 Salmonella enterica strain PNUSAS392457 SAMN37857135-rid19851073.denovo.01, whole genome shotgun sequence	267505..267942	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZTF010000019.1 Salmonella enterica strain PNUSAS392457 SAMN37857135-rid19851073.guided.11, whole genome shotgun sequence	42442..42879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZTF010000002.1	653659..654529	99.656	871	0						
GCA_032793105.1_PDT001941956.1_genomic.fna	Salmonella_enterica	0.521	365.032 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZTI010000001.1 Salmonella enterica strain PNUSAS392462 SAMN37857133-rid19850613.denovo.01, whole genome shotgun sequence	415442..415879	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZTI010000033.1 Salmonella enterica strain PNUSAS392462 SAMN37857133-rid19850613.guided.22, whole genome shotgun sequence	1396..1833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZTI010000008.1	140303..141172	99.425	870	0						
GCA_032793125.1_PDT001941940.1_genomic.fna	Salmonella_enterica	0.5207	401.533 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZTJ010000004.1 Salmonella enterica strain PNUSAS392409 SAMN37856679-rid19850473.denovo.04, whole genome shotgun sequence	159428..159865	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZTJ010000020.1 Salmonella enterica strain PNUSAS392409 SAMN37856679-rid19850473.denovo.21, whole genome shotgun sequence	8314..9150	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZTJ010000020.1 Salmonella enterica strain PNUSAS392409 SAMN37856679-rid19850473.denovo.21, whole genome shotgun sequence	9150..9953	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNZTJ010000031.1 Salmonella enterica strain PNUSAS392409 SAMN37856679-rid19850473.guided.17, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZTJ010000032.1 Salmonella enterica strain PNUSAS392409 SAMN37856679-rid19850473.guided.23, whole genome shotgun sequence	28288..29124	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZTJ010000032.1 Salmonella enterica strain PNUSAS392409 SAMN37856679-rid19850473.guided.23, whole genome shotgun sequence	27485..28288	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNZTJ010000037.1 Salmonella enterica strain PNUSAS392409 SAMN37856679-rid19850473.guided.33, whole genome shotgun sequence	129..944	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	blaCMY-2	100	1146/1146	ABNZTJ010000036.1 Salmonella enterica strain PNUSAS392409 SAMN37856679-rid19850473.guided.31, whole genome shotgun sequence	155..1300	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABNZTJ010000020.1 Salmonella enterica strain PNUSAS392409 SAMN37856679-rid19850473.denovo.21, whole genome shotgun sequence	3965..5178	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNZTJ010000035.1 Salmonella enterica strain PNUSAS392409 SAMN37856679-rid19850473.guided.30, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNZTJ010000020.1 Salmonella enterica strain PNUSAS392409 SAMN37856679-rid19850473.denovo.21, whole genome shotgun sequence	10014..10829	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZTJ010000032.1 Salmonella enterica strain PNUSAS392409 SAMN37856679-rid19850473.guided.23, whole genome shotgun sequence	26609..27424	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNZTJ010000020.1 Salmonella enterica strain PNUSAS392409 SAMN37856679-rid19850473.denovo.21, whole genome shotgun sequence	5779..7053	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNZTJ010000032.1 Salmonella enterica strain PNUSAS392409 SAMN37856679-rid19850473.guided.23, whole genome shotgun sequence	30385..31659	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFII(S)	97.71	262 / 262	ABNZTJ010000016.1 Salmonella enterica strain PNUSAS392409 SAMN37856679-rid19850473.denovo.16, whole genome shotgun sequence	25336..25595	enterobacteriales	IncX1	98.66	374 / 374	ABNZTJ010000023.1 Salmonella enterica strain PNUSAS392409 SAMN37856679-rid19850473.denovo.26, whole genome shotgun sequence	9676..10049																																																avrA	ABNZTJ010000001.1	504514..505382	99.54	870	0						
GCA_032793145.1_PDT001941954.1_genomic.fna	Salmonella_enterica	0.5216	441.713 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZTH010000001.1 Salmonella enterica strain PNUSAS392460 SAMN37857134-rid19850593.denovo.01, whole genome shotgun sequence	223192..223629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZTH010000029.1 Salmonella enterica strain PNUSAS392460 SAMN37857134-rid19850593.guided.14, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZTH010000004.1	401369..402238	99.655	870	0						
GCA_032793165.1_PDT001941937.1_genomic.fna	Salmonella_enterica	0.5209	494.772 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZTL010000002.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.denovo.02, whole genome shotgun sequence	285325..285762	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZTL010000018.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.denovo.18, whole genome shotgun sequence	6785..7621	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZTL010000018.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.denovo.18, whole genome shotgun sequence	7621..8424	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNZTL010000025.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.denovo.32, whole genome shotgun sequence	135..950	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	V00359	aph(6)-Id	100	837/837	ABNZTL010000030.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.guided.21, whole genome shotgun sequence	28288..29124	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZTL010000030.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.guided.21, whole genome shotgun sequence	27485..28288	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABNZTL010000031.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.guided.23, whole genome shotgun sequence	12703..13140	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABNZTL010000035.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.guided.31, whole genome shotgun sequence	129..944	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	V00359	blaCMY-2	100	1146/1146	ABNZTL010000034.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.guided.29, whole genome shotgun sequence	155..1300	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABNZTL010000018.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.denovo.18, whole genome shotgun sequence	2436..3649	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNZTL010000033.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.guided.28, whole genome shotgun sequence	2118..3331	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNZTL010000018.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.denovo.18, whole genome shotgun sequence	8485..9300	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZTL010000030.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.guided.21, whole genome shotgun sequence	26609..27424	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNZTL010000018.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.denovo.18, whole genome shotgun sequence	4250..5524	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNZTL010000030.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.guided.21, whole genome shotgun sequence	30385..31659	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																															gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFII(S)	97.71	262 / 262	ABNZTL010000014.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.denovo.14, whole genome shotgun sequence	29465..29724	enterobacteriales	IncX1	98.66	374 / 374	ABNZTL010000021.1 Salmonella enterica strain PNUSAS392410 SAMN37856680-rid19851033.denovo.25, whole genome shotgun sequence	1118..1491																																																avrA	ABNZTL010000003.1	504514..505382	99.54	870	0						
GCA_032793185.1_PDT001941939.1_genomic.fna	Salmonella_enterica	0.5204	207.445 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZTK010000001.1 Salmonella enterica strain PNUSAS392415 SAMN37856675-rid19850463.denovo.01, whole genome shotgun sequence	123844..124281	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZTK010000049.1 Salmonella enterica strain PNUSAS392415 SAMN37856675-rid19850463.guided.18, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABNZTK010000038.1 Salmonella enterica strain PNUSAS392415 SAMN37856675-rid19850463.denovo.41, whole genome shotgun sequence	816..967																																																						avrA	ABNZTK010000005.1	174642..175510	99.77	870	0						
GCA_032793205.1_PDT001941934.1_genomic.fna	Salmonella_enterica	0.5212	411.607 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZTN010000001.1 Salmonella enterica strain PNUSAS392419 SAMN37856683-rid19850423.denovo.01, whole genome shotgun sequence	482163..482600	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZTN010000023.1 Salmonella enterica strain PNUSAS392419 SAMN37856683-rid19850423.guided.15, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZTN010000004.1	130566..131435	99.77	870	0						
GCA_032793225.1_PDT001941935.1_genomic.fna	Salmonella_enterica	0.5216	552.172 KB	4	aroC_11,dnaN_10,hemD_25,hisD_42,purE_337,sucA_13,thrA_4	1954	4:e,h:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_42	purE	100	100	purE_337	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZTM010000004.1 Salmonella enterica strain PNUSAS392413 SAMN37856677-rid19850433.denovo.04, whole genome shotgun sequence	398184..398621	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZTM010000025.1 Salmonella enterica strain PNUSAS392413 SAMN37856677-rid19850433.guided.15, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	ABNZTM010000018.1 Salmonella enterica strain PNUSAS392413 SAMN37856677-rid19850433.denovo.21, whole genome shotgun sequence	192..384																																																						avrA	ABNZTM010000003.1	433643..434512	99.54	870	0						
GCA_032793245.1_PDT001941930.1_genomic.fna	Salmonella_enterica	0.5217	762.383 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZTO010000001.1 Salmonella enterica strain PNUSAS392418 SAMN37856685-rid19850383.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZTO010000023.1 Salmonella enterica strain PNUSAS392418 SAMN37856685-rid19850383.guided.11, whole genome shotgun sequence	28122..28559	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZTO010000004.1	401299..402168	99.655	870	0						
GCA_032793265.1_PDT001941926.1_genomic.fna	Salmonella_enterica	0.5204	489.843 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZTP010000001.1 Salmonella enterica strain PNUSAS392135 SAMN37856631-rid19850353.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZTP010000021.1 Salmonella enterica strain PNUSAS392135 SAMN37856631-rid19850353.guided.17, whole genome shotgun sequence	12407..12844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZTP010000012.1 Salmonella enterica strain PNUSAS392135 SAMN37856631-rid19850353.denovo.12, whole genome shotgun sequence	47963..48605	enterobacteriales	IncFII(S)	100	262 / 262	ABNZTP010000012.1 Salmonella enterica strain PNUSAS392135 SAMN37856631-rid19850353.denovo.12, whole genome shotgun sequence	3709..3970		enterobacteriales	IncX1	98.4	374 / 374	ABNZTP010000015.1 Salmonella enterica strain PNUSAS392135 SAMN37856631-rid19850353.denovo.16, whole genome shotgun sequence	10523..10896																																									avrA	ABNZTP010000002.1	553483..554352	99.54	870	0						
GCA_032793285.1_PDT001941925.1_genomic.fna	Salmonella_enterica	0.5215	691.153 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZTR010000001.1 Salmonella enterica strain PNUSAS392425 SAMN37856659-rid19850343.denovo.01, whole genome shotgun sequence	645007..645444	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZTR010000020.1 Salmonella enterica strain PNUSAS392425 SAMN37856659-rid19850343.guided.14, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZTR010000007.1	94002..94872	99.656	871	0						
GCA_032793305.1_PDT001941923.1_genomic.fna	Salmonella_enterica	0.5228	445.643 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZTQ010000002.1 Salmonella enterica strain PNUSAS392137 SAMN37856633-rid19850323.denovo.02, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZTQ010000032.1 Salmonella enterica strain PNUSAS392137 SAMN37856633-rid19850323.guided.22, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032793325.1_PDT001941922.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZTS010000001.1 Salmonella enterica strain PNUSAS392436 SAMN37856644-rid19851013.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZTS010000024.1 Salmonella enterica strain PNUSAS392436 SAMN37856644-rid19851013.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZTS010000014.1 Salmonella enterica strain PNUSAS392436 SAMN37856644-rid19851013.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNZTS010000014.1 Salmonella enterica strain PNUSAS392436 SAMN37856644-rid19851013.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNZTS010000002.1	553636..554505	99.54	870	0						
GCA_032793345.1_PDT001941920.1_genomic.fna	Salmonella_enterica	0.5194	430.035 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZTT010000001.1 Salmonella enterica strain PNUSAS392422 SAMN37856658-rid19850303.denovo.01, whole genome shotgun sequence	287202..287639	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZTT010000031.1 Salmonella enterica strain PNUSAS392422 SAMN37856658-rid19850303.guided.15, whole genome shotgun sequence	13372..13809	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNZTT010000022.1 Salmonella enterica strain PNUSAS392422 SAMN37856658-rid19850303.denovo.25, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZTT010000015.1 Salmonella enterica strain PNUSAS392422 SAMN37856658-rid19850303.denovo.16, whole genome shotgun sequence	2465..2998		enterobacteriales	IncX1	98.4	374 / 374	ABNZTT010000018.1 Salmonella enterica strain PNUSAS392422 SAMN37856658-rid19850303.denovo.20, whole genome shotgun sequence	6956..7329																																									avrA	ABNZTT010000010.1	150695..151565	99.196	871	0						
GCA_032793365.1_PDT001941915.1_genomic.fna	Salmonella_enterica	0.5206	405.76 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZTU010000005.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.denovo.05, whole genome shotgun sequence	159433..159870	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZTU010000021.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.denovo.23, whole genome shotgun sequence	8324..9160	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZTU010000021.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.denovo.23, whole genome shotgun sequence	9160..9963	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNZTU010000031.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.denovo.38, whole genome shotgun sequence	137..952	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aac(6')-Iaa	98.63	438/438	ABNZTU010000036.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.guided.20, whole genome shotgun sequence	14358..14795	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZTU010000038.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.guided.29, whole genome shotgun sequence	3513..4349	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZTU010000038.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.guided.29, whole genome shotgun sequence	2710..3513	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABNZTU010000041.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.guided.36, whole genome shotgun sequence	129..944	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	blaCMY-2	100	1146/1146	ABNZTU010000028.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.denovo.34, whole genome shotgun sequence	39..1184	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABNZTU010000040.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.guided.33, whole genome shotgun sequence	155..1300	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABNZTU010000021.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.denovo.23, whole genome shotgun sequence	3975..5188	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNZTU010000039.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.guided.32, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABNZTU010000021.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.denovo.23, whole genome shotgun sequence	10024..10839	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZTU010000038.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.guided.29, whole genome shotgun sequence	1834..2649	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABNZTU010000021.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.denovo.23, whole genome shotgun sequence	5789..7063	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNZTU010000038.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.guided.29, whole genome shotgun sequence	5610..6884	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABNZTU010000020.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.denovo.22, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABNZTU010000016.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.denovo.17, whole genome shotgun sequence	29465..29724		enterobacteriales	IncX1	98.66	374 / 374	ABNZTU010000025.1 Salmonella enterica strain PNUSAS392435 SAMN37856640-rid19850263.denovo.28, whole genome shotgun sequence	8874..9247																																									avrA	ABNZTU010000001.1	504514..505382	99.54	870	0						
GCA_032793385.1_PDT001941911.1_genomic.fna	Salmonella_enterica	0.5194	331.801 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZTV010000001.1 Salmonella enterica strain PNUSAS392428 SAMN37856646-rid19850233.denovo.01, whole genome shotgun sequence	145333..145770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZTV010000031.1 Salmonella enterica strain PNUSAS392428 SAMN37856646-rid19850233.guided.13, whole genome shotgun sequence	33951..34388	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNZTV010000023.1 Salmonella enterica strain PNUSAS392428 SAMN37856646-rid19850233.denovo.26, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZTV010000015.1 Salmonella enterica strain PNUSAS392428 SAMN37856646-rid19850233.denovo.16, whole genome shotgun sequence	6118..6651		enterobacteriales	IncX1	98.4	374 / 374	ABNZTV010000019.1 Salmonella enterica strain PNUSAS392428 SAMN37856646-rid19850233.denovo.20, whole genome shotgun sequence	6956..7329																																									avrA	ABNZTV010000009.1	150695..151565	99.196	871	0						
GCA_032793405.1_PDT001941908.1_genomic.fna	Salmonella_enterica	0.521	480.935 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZTY010000001.1 Salmonella enterica strain PNUSAS392431 SAMN37856652-rid19850203.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZTY010000026.1 Salmonella enterica strain PNUSAS392431 SAMN37856652-rid19850203.guided.15, whole genome shotgun sequence	17530..17967	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZTY010000015.1 Salmonella enterica strain PNUSAS392431 SAMN37856652-rid19850203.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNZTY010000015.1 Salmonella enterica strain PNUSAS392431 SAMN37856652-rid19850203.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABNZTY010000002.1	553312..554181	99.54	870	0						
GCA_032793425.1_PDT001941900.1_genomic.fna	Salmonella_enterica	0.5209	484.847 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZTZ010000001.1 Salmonella enterica strain PNUSAS392136 SAMN37856563-rid19850133.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZTZ010000019.1 Salmonella enterica strain PNUSAS392136 SAMN37856563-rid19850133.guided.15, whole genome shotgun sequence	5092..5529	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032793445.1_PDT001941797.1_genomic.fna	Salmonella_enterica	0.5209	490.157 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZTX010000001.1 Salmonella enterica strain PNUSAS392178 SAMN37855876-rid19849683.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZTX010000025.1 Salmonella enterica strain PNUSAS392178 SAMN37855876-rid19849683.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZTX010000013.1 Salmonella enterica strain PNUSAS392178 SAMN37855876-rid19849683.denovo.15, whole genome shotgun sequence	40575..41217	enterobacteriales	IncFII(S)	100	262 / 262	ABNZTX010000016.1 Salmonella enterica strain PNUSAS392178 SAMN37855876-rid19849683.denovo.19, whole genome shotgun sequence	3438..3699																																																avrA	ABNZTX010000002.1	553678..554547	99.54	870	0						
GCA_032793465.1_PDT001941899.1_genomic.fna	Salmonella_enterica	0.5196	490.695 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI2(Delta),IncX4	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZTW010000001.1 Salmonella enterica strain PNUSAS392131 SAMN37856547-rid19850123.denovo.01, whole genome shotgun sequence	510589..511026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZTW010000027.1 Salmonella enterica strain PNUSAS392131 SAMN37856547-rid19850123.guided.22, whole genome shotgun sequence	7535..7972	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	100	316 / 316	ABNZTW010000014.1 Salmonella enterica strain PNUSAS392131 SAMN37856547-rid19850123.denovo.14, whole genome shotgun sequence	27050..27365	enterobacteriales	IncX4	98.74	712 / 712	ABNZTW010000015.1 Salmonella enterica strain PNUSAS392131 SAMN37856547-rid19850123.denovo.16, whole genome shotgun sequence	28681..29392																																																avrA	ABNZTW010000002.1	544607..545475	99.425	870	0						
GCA_032793525.1_PDT001785542.1_genomic.fna	Salmonella_enterica	0.5216	555.697 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABNZUC010000001.1 Salmonella enterica strain PNUSAS356674 SAMN35794369-rid18530093.denovo.01, whole genome shotgun sequence	670153..670590	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABNZUC010000023.1 Salmonella enterica strain PNUSAS356674 SAMN35794369-rid18530093.guided.15, whole genome shotgun sequence	13941..14378	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032793545.1_PDT001785541.1_genomic.fna	Salmonella_enterica	0.5219	521.606 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZUF010000001.1 Salmonella enterica strain PNUSAS356669 SAMN35794370-rid18520773.denovo.01, whole genome shotgun sequence	833244..833681	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZUF010000021.1 Salmonella enterica strain PNUSAS356669 SAMN35794370-rid18520773.guided.14, whole genome shotgun sequence	10037..10474	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZUF010000002.1	662758..663627	99.77	870	0						
GCA_032793605.1_PDT001785540.1_genomic.fna	Salmonella_enterica	0.5214	680.165 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZUG010000001.1 Salmonella enterica strain PNUSAS356668 SAMN35794371-rid18531383.denovo.01, whole genome shotgun sequence	510328..510765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZUG010000018.1 Salmonella enterica strain PNUSAS356668 SAMN35794371-rid18531383.guided.13, whole genome shotgun sequence	3617..4054	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZUG010000002.1	544792..545660	99.425	870	0						
GCA_032793625.1_PDT001785537.1_genomic.fna	Salmonella_enterica	0.5211	457.025 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZUH010000001.1 Salmonella enterica strain PNUSAS356667 SAMN35794350-rid18517773.denovo.01, whole genome shotgun sequence	562173..562610	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZUH010000023.1 Salmonella enterica strain PNUSAS356667 SAMN35794350-rid18517773.guided.20, whole genome shotgun sequence	10843..11280	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZUH010000009.1	140203..141071	99.195	870	0						
GCA_032793645.1_PDT001785536.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZUI010000001.1 Salmonella enterica strain PNUSAS356679 SAMN35794352-rid18526933.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZUI010000030.1 Salmonella enterica strain PNUSAS356679 SAMN35794352-rid18526933.guided.29, whole genome shotgun sequence	250..687	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.76	643 / 643	ABNZUI010000014.1 Salmonella enterica strain PNUSAS356679 SAMN35794352-rid18526933.denovo.14, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABNZUI010000017.1 Salmonella enterica strain PNUSAS356679 SAMN35794352-rid18526933.denovo.17, whole genome shotgun sequence	3414..3675																																																avrA	ABNZUI010000002.1	553505..554374	99.54	870	0						
GCA_032793665.1_PDT001785534.1_genomic.fna	Salmonella_enterica	0.5208	696.237 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZUK010000001.1 Salmonella enterica strain PNUSAS356684 SAMN35794359-rid18520763.denovo.01, whole genome shotgun sequence	382083..382520	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZUK010000026.1 Salmonella enterica strain PNUSAS356684 SAMN35794359-rid18520763.guided.19, whole genome shotgun sequence	268..705	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032793685.1_PDT001785535.1_genomic.fna	Salmonella_enterica	0.5212	348.673 KB	5	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZUJ010000001.1 Salmonella enterica strain PNUSAS356677 SAMN35794361-rid18528543.denovo.01, whole genome shotgun sequence	482600..483037	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZUJ010000042.1 Salmonella enterica strain PNUSAS356677 SAMN35794361-rid18528543.guided.27, whole genome shotgun sequence	832..1269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZUJ010000017.1 Salmonella enterica strain PNUSAS356677 SAMN35794361-rid18528543.denovo.17, whole genome shotgun sequence	48425..49067	enterobacteriales	IncFII(S)	100	262 / 262	ABNZUJ010000017.1 Salmonella enterica strain PNUSAS356677 SAMN35794361-rid18528543.denovo.17, whole genome shotgun sequence	64152..64413																																																avrA	ABNZUJ010000005.1	174642..175511	99.885	870	0						
GCA_032793705.1_PDT001941996.1_genomic.fna	Salmonella_enterica	0.5189	728.763 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZUM010000001.1 Salmonella enterica strain PNUSAS392643 SAMN37857388-rid19850943.denovo.01, whole genome shotgun sequence	645096..645533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABNZUM010000023.1 Salmonella enterica strain PNUSAS392643 SAMN37857388-rid19850943.guided.13, whole genome shotgun sequence	14362..14799	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZUM010000010.1 Salmonella enterica strain PNUSAS392643 SAMN37857388-rid19850943.denovo.11, whole genome shotgun sequence	7712..8245																																																						avrA	ABNZUM010000004.1	560992..561862	99.656	871	0						
GCA_032793725.1_PDT001785533.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZUL010000001.1 Salmonella enterica strain PNUSAS356681 SAMN35794353-rid18523713.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZUL010000022.1 Salmonella enterica strain PNUSAS356681 SAMN35794353-rid18523713.guided.18, whole genome shotgun sequence	1073..1510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZUL010000012.1 Salmonella enterica strain PNUSAS356681 SAMN35794353-rid18523713.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABNZUL010000012.1 Salmonella enterica strain PNUSAS356681 SAMN35794353-rid18523713.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABNZUL010000002.1	553636..554505	99.54	870	0						
GCA_032793745.1_PDT001941984.1_genomic.fna	Salmonella_enterica	0.5215	290.398 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZUN010000003.1 Salmonella enterica strain PNUSAS392500 SAMN37857290-rid19850843.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZUN010000053.1 Salmonella enterica strain PNUSAS392500 SAMN37857290-rid19850843.guided.23, whole genome shotgun sequence	31991..32428	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZUN010000015.1 Salmonella enterica strain PNUSAS392500 SAMN37857290-rid19850843.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNZUN010000015.1 Salmonella enterica strain PNUSAS392500 SAMN37857290-rid19850843.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNZUN010000001.1	401155..402023	100	869	0						
GCA_032793765.1_PDT001941969.1_genomic.fna	Salmonella_enterica	0.5217	261.223 KB	6	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNZUP010000002.1 Salmonella enterica strain PNUSAS392475 SAMN37857230-rid19851093.denovo.02, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNZUP010000033.1 Salmonella enterica strain PNUSAS392475 SAMN37857230-rid19851093.guided.27, whole genome shotgun sequence	24532..24969	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZUP010000005.1	99287..100156	99.77	870	0						
GCA_032793785.1_PDT001941979.1_genomic.fna	Salmonella_enterica	0.5217	304.975 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNZUO010000010.1 Salmonella enterica strain PNUSAS392497 SAMN37857289-rid19851103.denovo.10, whole genome shotgun sequence	70822..71259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNZUO010000040.1 Salmonella enterica strain PNUSAS392497 SAMN37857289-rid19851103.guided.34, whole genome shotgun sequence	657..1094	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZUO010000001.1	94227..95096	98.966	870	0						
GCA_032793805.1_PDT001941952.1_genomic.fna	Salmonella_enterica	0.5198	359.657 KB	7	aroC_231,dnaN_38,hemD_228,hisD_388,purE_342,sucA_216,thrA_209	1096	4:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	2	IncFII(S),IncFII(pCRY)	aroC	100	100	aroC_231	dnaN	100	100	dnaN_38	hemD	100	100	hemD_228	hisD	100	100	hisD_388	purE	100	100	purE_342	sucA	100	100	sucA_216	thrA	100	100	thrA_209	4	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Texas		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZUR010000009.1 Salmonella enterica strain PNUSAS392463 SAMN37857057-rid19850573.denovo.09, whole genome shotgun sequence	72651..73088	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZUR010000056.1 Salmonella enterica strain PNUSAS392463 SAMN37857057-rid19850573.guided.23, whole genome shotgun sequence	42033..42470	Amikacin, Tobramycin	NC_003197	fosA7	93.85	423/423	ABNZUR010000003.1 Salmonella enterica strain PNUSAS392463 SAMN37857057-rid19850573.denovo.03, whole genome shotgun sequence	325204..325626	Fosfomycin	LAPJ01000014	fosA7	93.85	423/423	ABNZUR010000055.1 Salmonella enterica strain PNUSAS392463 SAMN37857057-rid19850573.guided.10, whole genome shotgun sequence	151404..151826	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	95.4	261 / 262	ABNZUR010000014.1 Salmonella enterica strain PNUSAS392463 SAMN37857057-rid19850573.denovo.15, whole genome shotgun sequence	27405..27663	enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABNZUR010000029.1 Salmonella enterica strain PNUSAS392463 SAMN37857057-rid19850573.denovo.32, whole genome shotgun sequence	595..1187																																																											
GCA_032793905.1_PDT001941938.1_genomic.fna	Salmonella_enterica	0.5216	333.186 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZUV010000001.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNZUV010000025.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.denovo.27, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZUV010000025.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.denovo.27, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNZUV010000038.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.denovo.44, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNZUV010000038.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.denovo.44, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNZUV010000053.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.guided.26, whole genome shotgun sequence	9810..10247	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABNZUV010000055.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.guided.33, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABNZUV010000055.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.guided.33, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABNZUV010000057.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.guided.43, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNZUV010000057.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.guided.43, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABNZUV010000040.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.denovo.47, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABNZUV010000058.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.guided.46, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABNZUV010000034.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.denovo.38, whole genome shotgun sequence	3786..4999	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNZUV010000056.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.guided.40, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABNZUV010000025.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.denovo.27, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABNZUV010000055.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.guided.33, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABNZUV010000025.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.denovo.27, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABNZUV010000055.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.guided.33, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNZUV010000029.1 Salmonella enterica strain PNUSAS392420 SAMN37856684-rid19850453.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABNZUV010000003.1	93808..94677	99.655	870	0						
GCA_032793925.1_PDT001941936.1_genomic.fna	Salmonella_enterica	0.5202	183.699 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,blaTEM-1B,blaTEM-1B,sul1,sul2,sul1,sul2,tet(B),tet(B),dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNZUW010000011.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.denovo.11, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZUW010000034.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.denovo.35, whole genome shotgun sequence	26888..27724	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZUW010000034.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.denovo.35, whole genome shotgun sequence	27724..28527	Streptomycin	AF321551	aadA1	100	792/792	ABNZUW010000034.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.denovo.35, whole genome shotgun sequence	24284..25075	Spectinomycin, Streptomycin	JX185132	aac(6')-Iaa	97.47	435/438	ABNZUW010000060.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.guided.36, whole genome shotgun sequence	9841..10275	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZUW010000061.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.guided.39, whole genome shotgun sequence	19862..20698	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZUW010000061.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.guided.39, whole genome shotgun sequence	20698..21501	Streptomycin	AF321551	aadA1	100	792/792	ABNZUW010000061.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.guided.39, whole genome shotgun sequence	17258..18049	Spectinomycin, Streptomycin	JX185132	blaTEM-1B	100	861/861	ABNZUW010000056.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.denovo.61, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZUW010000063.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.guided.60, whole genome shotgun sequence	126..986	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	ABNZUW010000034.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.denovo.35, whole genome shotgun sequence	22940..23779	Sulfamethoxazole	U12338	sul2	100	816/816	ABNZUW010000034.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.denovo.35, whole genome shotgun sequence	28588..29403	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABNZUW010000061.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.guided.39, whole genome shotgun sequence	15914..16753	Sulfamethoxazole	U12338	sul2	100	816/816	ABNZUW010000061.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.guided.39, whole genome shotgun sequence	21562..22377	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNZUW010000034.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.denovo.35, whole genome shotgun sequence	19735..20940	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZUW010000061.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.guided.39, whole genome shotgun sequence	12709..13914	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA1	99.79	474/474	ABNZUW010000034.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.denovo.35, whole genome shotgun sequence	25168..25641	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNZUW010000034.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.denovo.35, whole genome shotgun sequence	25168..25641	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNZUW010000034.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.denovo.35, whole genome shotgun sequence	25168..25641	Trimethoprim	X00926	dfrA1	99.79	474/474	ABNZUW010000061.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.guided.39, whole genome shotgun sequence	18142..18615	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNZUW010000061.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.guided.39, whole genome shotgun sequence	18142..18615	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNZUW010000061.1 Salmonella enterica strain PNUSAS392411 SAMN37856678-rid19850443.guided.39, whole genome shotgun sequence	18142..18615	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																														gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032793945.1_PDT001941919.1_genomic.fna	Salmonella_enterica	0.5197	366.786 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZUX010000001.1 Salmonella enterica strain PNUSAS392417 SAMN37856669-rid19850293.denovo.01, whole genome shotgun sequence	145333..145770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZUX010000032.1 Salmonella enterica strain PNUSAS392417 SAMN37856669-rid19850293.guided.21, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNZUX010000024.1 Salmonella enterica strain PNUSAS392417 SAMN37856669-rid19850293.denovo.27, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZUX010000016.1 Salmonella enterica strain PNUSAS392417 SAMN37856669-rid19850293.denovo.16, whole genome shotgun sequence	6118..6651		enterobacteriales	IncX1	98.4	374 / 374	ABNZUX010000020.1 Salmonella enterica strain PNUSAS392417 SAMN37856669-rid19850293.denovo.22, whole genome shotgun sequence	6956..7329																																									avrA	ABNZUX010000012.1	93870..94740	99.196	871	0						
GCA_032793965.1_PDT001941916.1_genomic.fna	Salmonella_enterica	0.5209	279.776 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZUZ010000001.1 Salmonella enterica strain PNUSAS392426 SAMN37856657-rid19850273.denovo.01, whole genome shotgun sequence	569503..569940	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZUZ010000043.1 Salmonella enterica strain PNUSAS392426 SAMN37856657-rid19850273.denovo.48, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZUZ010000043.1 Salmonella enterica strain PNUSAS392426 SAMN37856657-rid19850273.denovo.48, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNZUZ010000058.1 Salmonella enterica strain PNUSAS392426 SAMN37856657-rid19850273.guided.13, whole genome shotgun sequence	4368..4805	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZUZ010000062.1 Salmonella enterica strain PNUSAS392426 SAMN37856657-rid19850273.guided.46, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZUZ010000062.1 Salmonella enterica strain PNUSAS392426 SAMN37856657-rid19850273.guided.46, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNZUZ010000048.1 Salmonella enterica strain PNUSAS392426 SAMN37856657-rid19850273.denovo.54, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZUZ010000063.1 Salmonella enterica strain PNUSAS392426 SAMN37856657-rid19850273.guided.53, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNZUZ010000043.1 Salmonella enterica strain PNUSAS392426 SAMN37856657-rid19850273.denovo.48, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNZUZ010000062.1 Salmonella enterica strain PNUSAS392426 SAMN37856657-rid19850273.guided.46, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNZUZ010000033.1 Salmonella enterica strain PNUSAS392426 SAMN37856657-rid19850273.denovo.37, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZUZ010000061.1 Salmonella enterica strain PNUSAS392426 SAMN37856657-rid19850273.guided.36, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	ColRNAI	90.08	131 / 130	ABNZUZ010000040.1 Salmonella enterica strain PNUSAS392426 SAMN37856657-rid19850273.denovo.44, whole genome shotgun sequence	3981..4111																																																						avrA	ABNZUZ010000002.1	434506..435375	99.885	870	0						
GCA_032793985.1_PDT001941910.1_genomic.fna	Salmonella_enterica	0.5203	183.699 KB	9	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,blaTEM-1B,blaTEM-1B,sul1,sul2,sul1,sul2,tet(B),tet(B),dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABNZUY010000010.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZUY010000032.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.denovo.34, whole genome shotgun sequence	26888..27724	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZUY010000032.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.denovo.34, whole genome shotgun sequence	27724..28527	Streptomycin	AF321551	aadA1	100	792/792	ABNZUY010000032.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.denovo.34, whole genome shotgun sequence	24284..25075	Spectinomycin, Streptomycin	JX185132	aac(6')-Iaa	97.47	435/438	ABNZUY010000054.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.guided.31, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZUY010000055.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.guided.40, whole genome shotgun sequence	12444..13280	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZUY010000055.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.guided.40, whole genome shotgun sequence	13280..14083	Streptomycin	AF321551	aadA1	100	792/792	ABNZUY010000055.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.guided.40, whole genome shotgun sequence	9840..10631	Spectinomycin, Streptomycin	JX185132	blaTEM-1B	100	861/861	ABNZUY010000047.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.denovo.51, whole genome shotgun sequence	910..1770	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZUY010000057.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.guided.56, whole genome shotgun sequence	126..986	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	ABNZUY010000032.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.denovo.34, whole genome shotgun sequence	22940..23779	Sulfamethoxazole	U12338	sul2	100	816/816	ABNZUY010000032.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.denovo.34, whole genome shotgun sequence	28588..29403	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABNZUY010000055.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.guided.40, whole genome shotgun sequence	8496..9335	Sulfamethoxazole	U12338	sul2	100	816/816	ABNZUY010000055.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.guided.40, whole genome shotgun sequence	14144..14959	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNZUY010000032.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.denovo.34, whole genome shotgun sequence	19735..20940	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZUY010000055.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.guided.40, whole genome shotgun sequence	5291..6496	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA1	99.79	474/474	ABNZUY010000032.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.denovo.34, whole genome shotgun sequence	25168..25641	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNZUY010000032.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.denovo.34, whole genome shotgun sequence	25168..25641	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNZUY010000032.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.denovo.34, whole genome shotgun sequence	25168..25641	Trimethoprim	X00926	dfrA1	99.79	474/474	ABNZUY010000055.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.guided.40, whole genome shotgun sequence	10724..11197	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABNZUY010000055.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.guided.40, whole genome shotgun sequence	10724..11197	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABNZUY010000055.1 Salmonella enterica strain PNUSAS392424 SAMN37856660-rid19850223.guided.40, whole genome shotgun sequence	10724..11197	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																														gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032793995.1_PDT001941904.1_genomic.fna	Salmonella_enterica	0.5214	285.767 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZVB010000001.1 Salmonella enterica strain PNUSAS392133 SAMN37856553-rid19850163.denovo.01, whole genome shotgun sequence	581034..581471	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZVB010000032.1 Salmonella enterica strain PNUSAS392133 SAMN37856553-rid19850163.denovo.37, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZVB010000032.1 Salmonella enterica strain PNUSAS392133 SAMN37856553-rid19850163.denovo.37, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNZVB010000048.1 Salmonella enterica strain PNUSAS392133 SAMN37856553-rid19850163.guided.32, whole genome shotgun sequence	6040..6477	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZVB010000049.1 Salmonella enterica strain PNUSAS392133 SAMN37856553-rid19850163.guided.36, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZVB010000049.1 Salmonella enterica strain PNUSAS392133 SAMN37856553-rid19850163.guided.36, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNZVB010000037.1 Salmonella enterica strain PNUSAS392133 SAMN37856553-rid19850163.denovo.43, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZVB010000050.1 Salmonella enterica strain PNUSAS392133 SAMN37856553-rid19850163.guided.42, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNZVB010000032.1 Salmonella enterica strain PNUSAS392133 SAMN37856553-rid19850163.denovo.37, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNZVB010000049.1 Salmonella enterica strain PNUSAS392133 SAMN37856553-rid19850163.guided.36, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNZVB010000028.1 Salmonella enterica strain PNUSAS392133 SAMN37856553-rid19850163.denovo.29, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZVB010000046.1 Salmonella enterica strain PNUSAS392133 SAMN37856553-rid19850163.guided.30, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABNZVB010000002.1	540628..541497	99.885	870	0						
GCA_032794025.1_PDT001941905.1_genomic.fna	Salmonella_enterica	0.5199	408.466 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZVA010000001.1 Salmonella enterica strain PNUSAS392421 SAMN37856672-rid19850173.denovo.01, whole genome shotgun sequence	136534..136971	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZVA010000031.1 Salmonella enterica strain PNUSAS392421 SAMN37856672-rid19850173.guided.23, whole genome shotgun sequence	9935..10372	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNZVA010000024.1 Salmonella enterica strain PNUSAS392421 SAMN37856672-rid19850173.denovo.27, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZVA010000016.1 Salmonella enterica strain PNUSAS392421 SAMN37856672-rid19850173.denovo.16, whole genome shotgun sequence	2740..3273		enterobacteriales	IncX1	98.4	374 / 374	ABNZVA010000019.1 Salmonella enterica strain PNUSAS392421 SAMN37856672-rid19850173.denovo.19, whole genome shotgun sequence	6956..7329																																									avrA	ABNZVA010000009.1	150695..151565	99.196	871	0						
GCA_032794045.1_PDT001941761.1_genomic.fna	Salmonella_enterica	0.5222	393.07 KB	4	aroC_42,dnaN_11,hemD_48,hisD_149,purE_12,sucA_13,thrA_4	1575	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZVC010000001.1 Salmonella enterica strain PNUSAS392318 SAMN37855793-rid19849493.denovo.01, whole genome shotgun sequence	464393..464830	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZVC010000054.1 Salmonella enterica strain PNUSAS392318 SAMN37855793-rid19849493.guided.17, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032794065.1_PDT001785532.1_genomic.fna	Salmonella_enterica	0.5209	278.344 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	Col(pHAD28),IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZVF010000001.1 Salmonella enterica strain PNUSAS356680 SAMN35794354-rid18519413.denovo.01, whole genome shotgun sequence	570065..570502	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZVF010000041.1 Salmonella enterica strain PNUSAS356680 SAMN35794354-rid18519413.denovo.45, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZVF010000041.1 Salmonella enterica strain PNUSAS356680 SAMN35794354-rid18519413.denovo.45, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	404/438	ABNZVF010000052.1 Salmonella enterica strain PNUSAS356680 SAMN35794354-rid18519413.guided.39, whole genome shotgun sequence	1..404	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNZVF010000053.1 Salmonella enterica strain PNUSAS356680 SAMN35794354-rid18519413.guided.44, whole genome shotgun sequence	2020..2856	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZVF010000053.1 Salmonella enterica strain PNUSAS356680 SAMN35794354-rid18519413.guided.44, whole genome shotgun sequence	1217..2020	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABNZVF010000042.1 Salmonella enterica strain PNUSAS356680 SAMN35794354-rid18519413.denovo.48, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZVF010000055.1 Salmonella enterica strain PNUSAS356680 SAMN35794354-rid18519413.guided.47, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABNZVF010000041.1 Salmonella enterica strain PNUSAS356680 SAMN35794354-rid18519413.denovo.45, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNZVF010000053.1 Salmonella enterica strain PNUSAS356680 SAMN35794354-rid18519413.guided.44, whole genome shotgun sequence	341..1156	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABNZVF010000031.1 Salmonella enterica strain PNUSAS356680 SAMN35794354-rid18519413.denovo.31, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZVF010000054.1 Salmonella enterica strain PNUSAS356680 SAMN35794354-rid18519413.guided.46, whole genome shotgun sequence	447..1652	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABNZVF010000035.1 Salmonella enterica strain PNUSAS356680 SAMN35794354-rid18519413.denovo.37, whole genome shotgun sequence	1326..1445	enterobacteriales	IncY	99.74	765 / 765	ABNZVF010000014.1 Salmonella enterica strain PNUSAS356680 SAMN35794354-rid18519413.denovo.14, whole genome shotgun sequence	38912..39676																																																avrA	ABNZVF010000002.1	540741..541610	99.885	870	0						
GCA_032794085.1_PDT001785531.1_genomic.fna	Salmonella_enterica	0.5231	444.116 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZVD010000001.1 Salmonella enterica strain PNUSAS356683 SAMN35794355-rid18522203.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZVD010000028.1 Salmonella enterica strain PNUSAS356683 SAMN35794355-rid18522203.guided.20, whole genome shotgun sequence	10426..10863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZVD010000002.1	94085..94954	99.655	870	0						
GCA_032794105.1_PDT001785530.1_genomic.fna	Salmonella_enterica	0.5215	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZVE010000001.1 Salmonella enterica strain PNUSAS356682 SAMN35794360-rid18531373.denovo.01, whole genome shotgun sequence	501493..501930	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZVE010000028.1 Salmonella enterica strain PNUSAS356682 SAMN35794360-rid18531373.guided.18, whole genome shotgun sequence	12294..12731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZVE010000014.1 Salmonella enterica strain PNUSAS356682 SAMN35794360-rid18531373.denovo.14, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABNZVE010000018.1 Salmonella enterica strain PNUSAS356682 SAMN35794360-rid18531373.denovo.20, whole genome shotgun sequence	3446..3707																																																avrA	ABNZVE010000002.1	553636..554505	99.54	870	0						
GCA_032794125.1_PDT001785529.1_genomic.fna	Salmonella_enterica	0.5209	194.62 KB	9	aroC_48,dnaN_108,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	356	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_108	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZVG010000010.1 Salmonella enterica strain PNUSAS356666 SAMN35794365-rid18517763.denovo.10, whole genome shotgun sequence	37916..38353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZVG010000065.1 Salmonella enterica strain PNUSAS356666 SAMN35794365-rid18517763.guided.47, whole genome shotgun sequence	2844..3281	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNZVG010000014.1 Salmonella enterica strain PNUSAS356666 SAMN35794365-rid18517763.denovo.14, whole genome shotgun sequence	134617..135259																																																																	
GCA_032794145.1_PDT001785528.1_genomic.fna	Salmonella_enterica	0.5232	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZVH010000001.1 Salmonella enterica strain PNUSAS356671 SAMN35794364-rid18526923.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZVH010000028.1 Salmonella enterica strain PNUSAS356671 SAMN35794364-rid18526923.guided.19, whole genome shotgun sequence	18476..18913	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZVH010000002.1	149923..150792	99.655	870	0						
GCA_032794165.1_PDT001785526.1_genomic.fna	Salmonella_enterica	0.5212	406.368 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZVK010000004.1 Salmonella enterica strain PNUSAS356678 SAMN35794351-rid18526913.denovo.04, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZVK010000028.1 Salmonella enterica strain PNUSAS356678 SAMN35794351-rid18526913.guided.19, whole genome shotgun sequence	1795..2232	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZVK010000015.1 Salmonella enterica strain PNUSAS356678 SAMN35794351-rid18526913.denovo.15, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNZVK010000020.1 Salmonella enterica strain PNUSAS356678 SAMN35794351-rid18526913.denovo.21, whole genome shotgun sequence	3395..3656																																																avrA	ABNZVK010000001.1	538882..539751	99.54	870	0						
GCA_032794185.1_PDT001785527.1_genomic.fna	Salmonella_enterica	0.5207	673.243 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZVI010000001.1 Salmonella enterica strain PNUSAS356670 SAMN35794358-rid18517753.denovo.01, whole genome shotgun sequence	414776..415213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZVI010000022.1 Salmonella enterica strain PNUSAS356670 SAMN35794358-rid18517753.guided.17, whole genome shotgun sequence	364..801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032794205.1_PDT001785524.1_genomic.fna	Salmonella_enterica	0.5202	644.297 KB	4	aroC_398,dnaN_435,hemD_90,hisD_196,purE_39,sucA_437,thrA_446	2164	35:g,m,s:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	4	Col(pHAD28),Col440I,Col440II,IncFII(p96A)	aroC	100	100	aroC_398	dnaN	100	100	dnaN_435	hemD	100	100	hemD_90	hisD	100	100	hisD_196	purE	100	100	purE_39	sucA	100	100	sucA_437	thrA	100	100	thrA_446	35	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Ealing		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABNZVM010000008.1 Salmonella enterica strain PNUSAS356673 SAMN35794357-rid18519403.denovo.08, whole genome shotgun sequence	155187..155624	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABNZVM010000033.1 Salmonella enterica strain PNUSAS356673 SAMN35794357-rid18519403.guided.27, whole genome shotgun sequence	866..1303	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABNZVM010000020.1 Salmonella enterica strain PNUSAS356673 SAMN35794357-rid18519403.denovo.23, whole genome shotgun sequence	4145..4789	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABNZVM010000034.1 Salmonella enterica strain PNUSAS356673 SAMN35794357-rid18519403.guided.28, whole genome shotgun sequence	398..1042	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABNZVM010000020.1 Salmonella enterica strain PNUSAS356673 SAMN35794357-rid18519403.denovo.23, whole genome shotgun sequence	107..237	enterobacteriales	Col440I	93.64	110 / 114	ABNZVM010000022.1 Salmonella enterica strain PNUSAS356673 SAMN35794357-rid18519403.denovo.25, whole genome shotgun sequence	1189..1298		enterobacteriales	Col440II	97.16	282 / 282	ABNZVM010000019.1 Salmonella enterica strain PNUSAS356673 SAMN35794357-rid18519403.denovo.22, whole genome shotgun sequence	2296..2577		enterobacteriales	IncFII(p96A)	99.06	534 / 534	ABNZVM010000013.1 Salmonella enterica strain PNUSAS356673 SAMN35794357-rid18519403.denovo.13, whole genome shotgun sequence	557..1090																																													
GCA_032794225.1_PDT001785525.1_genomic.fna	Salmonella_enterica	0.5216	430.002 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZVJ010000001.1 Salmonella enterica strain PNUSAS356675 SAMN35794362-rid18530083.denovo.01, whole genome shotgun sequence	561468..561905	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZVJ010000032.1 Salmonella enterica strain PNUSAS356675 SAMN35794362-rid18530083.guided.25, whole genome shotgun sequence	1193..1630	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZVJ010000009.1	140191..141059	99.195	870	0						
GCA_032794245.1_PDT001785523.1_genomic.fna	Salmonella_enterica	0.5203	430.194 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI1-I(Alpha),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZVL010000002.1 Salmonella enterica strain PNUSAS356676 SAMN35794363-rid18523703.denovo.02, whole genome shotgun sequence	303024..303461	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.15	351/438	ABNZVL010000038.1 Salmonella enterica strain PNUSAS356676 SAMN35794363-rid18523703.guided.28, whole genome shotgun sequence	1..351	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNZVL010000013.1 Salmonella enterica strain PNUSAS356676 SAMN35794363-rid18523703.denovo.13, whole genome shotgun sequence	68660..68801	enterobacteriales	IncX1	98.14	377 / 377	ABNZVL010000020.1 Salmonella enterica strain PNUSAS356676 SAMN35794363-rid18523703.denovo.20, whole genome shotgun sequence	33497..33873																																																avrA	ABNZVL010000011.1	93876..94744	99.195	870	0						
GCA_032794265.1_PDT001785522.1_genomic.fna	Salmonella_enterica	0.5207	419.666 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZVN010000001.1 Salmonella enterica strain PNUSAS356672 SAMN35794356-rid18520753.denovo.01, whole genome shotgun sequence	477449..477886	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZVN010000029.1 Salmonella enterica strain PNUSAS356672 SAMN35794356-rid18520753.guided.19, whole genome shotgun sequence	2322..2759	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZVN010000003.1	504322..505192	99.196	871	0						
GCA_032794285.1_PDT001785512.1_genomic.fna	Salmonella_enterica	0.5216	401.93 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZVO010000002.1 Salmonella enterica strain PNUSAS356662 SAMN35793978-rid18516963.denovo.02, whole genome shotgun sequence	287941..288378	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZVO010000028.1 Salmonella enterica strain PNUSAS356662 SAMN35793978-rid18516963.guided.21, whole genome shotgun sequence	3087..3524	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZVO010000017.1 Salmonella enterica strain PNUSAS356662 SAMN35793978-rid18516963.denovo.17, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABNZVO010000017.1 Salmonella enterica strain PNUSAS356662 SAMN35793978-rid18516963.denovo.17, whole genome shotgun sequence	55606..55867																																																avrA	ABNZVO010000001.1	552998..553867	99.54	870	0						
GCA_032794305.1_PDT001785511.1_genomic.fna	Salmonella_enterica	0.5212	480.935 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZVP010000001.1 Salmonella enterica strain PNUSAS356664 SAMN35793976-rid18522173.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZVP010000023.1 Salmonella enterica strain PNUSAS356664 SAMN35793976-rid18522173.guided.17, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZVP010000015.1 Salmonella enterica strain PNUSAS356664 SAMN35793976-rid18522173.denovo.15, whole genome shotgun sequence	48558..49200	enterobacteriales	IncFII(S)	100	262 / 262	ABNZVP010000015.1 Salmonella enterica strain PNUSAS356664 SAMN35793976-rid18522173.denovo.15, whole genome shotgun sequence	4305..4566																																																avrA	ABNZVP010000002.1	553312..554181	99.54	870	0						
GCA_032794325.1_PDT001785510.1_genomic.fna	Salmonella_enterica	0.52	394.076 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZVQ010000001.1 Salmonella enterica strain PNUSAS356663 SAMN35793979-rid18528533.denovo.01, whole genome shotgun sequence	136574..137011	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZVQ010000025.1 Salmonella enterica strain PNUSAS356663 SAMN35793979-rid18528533.guided.16, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZVQ010000016.1 Salmonella enterica strain PNUSAS356663 SAMN35793979-rid18528533.denovo.18, whole genome shotgun sequence	34958..35491																																																						avrA	ABNZVQ010000003.1	497891..498759	99.425	870	0						
GCA_032794345.1_PDT001785508.1_genomic.fna	Salmonella_enterica	0.5212	439.377 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZVT010000001.1 Salmonella enterica strain PNUSAS356665 SAMN35793977-rid18522153.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZVT010000024.1 Salmonella enterica strain PNUSAS356665 SAMN35793977-rid18522153.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZVT010000014.1 Salmonella enterica strain PNUSAS356665 SAMN35793977-rid18522153.denovo.16, whole genome shotgun sequence	40527..41169	enterobacteriales	IncFII(S)	100	262 / 262	ABNZVT010000017.1 Salmonella enterica strain PNUSAS356665 SAMN35793977-rid18522153.denovo.20, whole genome shotgun sequence	3426..3687																																																avrA	ABNZVT010000002.1	553426..554295	99.54	870	0						
GCA_032794405.1_PDT001785509.1_genomic.fna	Salmonella_enterica	0.52	611.246 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZVR010000001.1 Salmonella enterica strain PNUSAS356661 SAMN35793980-rid18522163.denovo.01, whole genome shotgun sequence	136574..137011	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZVR010000026.1 Salmonella enterica strain PNUSAS356661 SAMN35793980-rid18522163.guided.18, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZVR010000014.1 Salmonella enterica strain PNUSAS356661 SAMN35793980-rid18522163.denovo.14, whole genome shotgun sequence	34958..35491																																																						avrA	ABNZVR010000003.1	497891..498759	99.425	870	0						
GCA_032794725.1_PDT001941998.1_genomic.fna	Salmonella_enterica	0.5221	215.362 KB	7	aroC_17,dnaN_2,hemD_10,hisD_166,purE_147,sucA_21,thrA_119	493	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_2	hemD	100	100	hemD_10	hisD	100	100	hisD_166	purE	100	100	purE_147	sucA	100	100	sucA_21	thrA	100	100	thrA_119	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZWK010000001.1 Salmonella enterica strain PNUSAS392641 SAMN37857385-rid19850963.denovo.01, whole genome shotgun sequence	358593..359030	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZWK010000038.1 Salmonella enterica strain PNUSAS392641 SAMN37857385-rid19850963.guided.17, whole genome shotgun sequence	42427..42864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZWK010000002.1	149680..150549	99.655	870	0						
GCA_032794745.1_PDT001941957.1_genomic.fna	Salmonella_enterica	0.521	338.954 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZWL010000001.1 Salmonella enterica strain PNUSAS392459 SAMN37857137-rid19851063.denovo.01, whole genome shotgun sequence	170667..171104	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZWL010000030.1 Salmonella enterica strain PNUSAS392459 SAMN37857137-rid19851063.guided.14, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZWL010000002.1	465067..465936	99.31	870	0						
GCA_032794785.1_PDT001941929.1_genomic.fna	Salmonella_enterica	0.5193	366.786 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZWO010000001.1 Salmonella enterica strain PNUSAS392430 SAMN37856654-rid19850373.denovo.01, whole genome shotgun sequence	145333..145770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZWO010000029.1 Salmonella enterica strain PNUSAS392430 SAMN37856654-rid19850373.guided.11, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNZWO010000023.1 Salmonella enterica strain PNUSAS392430 SAMN37856654-rid19850373.denovo.26, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZWO010000017.1 Salmonella enterica strain PNUSAS392430 SAMN37856654-rid19850373.denovo.19, whole genome shotgun sequence	2740..3273		enterobacteriales	IncX1	98.4	374 / 374	ABNZWO010000020.1 Salmonella enterica strain PNUSAS392430 SAMN37856654-rid19850373.denovo.22, whole genome shotgun sequence	6956..7329																																									avrA	ABNZWO010000009.1	150695..151565	99.196	871	0						
GCA_032794805.1_PDT001941941.1_genomic.fna	Salmonella_enterica	0.5216	737.142 KB	3	aroC_50,dnaN_10,hemD_25,hisD_72,purE_10,sucA_13,thrA_4	414	9:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Eastbourne		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZWM010000002.1 Salmonella enterica strain PNUSAS392414 SAMN37856673-rid19850483.denovo.02, whole genome shotgun sequence	645692..646129	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZWM010000022.1 Salmonella enterica strain PNUSAS392414 SAMN37856673-rid19850483.guided.14, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZWM010000004.1	39472..40341	99.31	870	0						
GCA_032794825.1_PDT001941921.1_genomic.fna	Salmonella_enterica	0.5194	435.551 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZWP010000001.1 Salmonella enterica strain PNUSAS392429 SAMN37856656-rid19850313.denovo.01, whole genome shotgun sequence	287202..287639	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZWP010000027.1 Salmonella enterica strain PNUSAS392429 SAMN37856656-rid19850313.guided.13, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABNZWP010000020.1 Salmonella enterica strain PNUSAS392429 SAMN37856656-rid19850313.denovo.23, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABNZWP010000015.1 Salmonella enterica strain PNUSAS392429 SAMN37856656-rid19850313.denovo.16, whole genome shotgun sequence	6118..6651		enterobacteriales	IncX1	98.4	374 / 374	ABNZWP010000018.1 Salmonella enterica strain PNUSAS392429 SAMN37856656-rid19850313.denovo.20, whole genome shotgun sequence	6956..7329																																									avrA	ABNZWP010000010.1	150695..151565	99.196	871	0						
GCA_032794845.1_PDT001941901.1_genomic.fna	Salmonella_enterica	0.522	225.553 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZWR010000002.1 Salmonella enterica strain PNUSAS392130 SAMN37856546-rid19850143.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZWR010000045.1 Salmonella enterica strain PNUSAS392130 SAMN37856546-rid19850143.guided.39, whole genome shotgun sequence	2655..3092	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZWR010000018.1 Salmonella enterica strain PNUSAS392130 SAMN37856546-rid19850143.denovo.18, whole genome shotgun sequence	48418..49060	enterobacteriales	IncFII(S)	100	262 / 262	ABNZWR010000018.1 Salmonella enterica strain PNUSAS392130 SAMN37856546-rid19850143.denovo.18, whole genome shotgun sequence	64145..64406																																																avrA	ABNZWR010000005.1	98459..99327	100	869	0						
GCA_032794865.1_PDT001941759.1_genomic.fna	Salmonella_enterica	0.5196	383.964 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZWS010000001.1 Salmonella enterica strain PNUSAS392320 SAMN37855795-rid19849483.denovo.01, whole genome shotgun sequence	258396..258833	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZWS010000058.1 Salmonella enterica strain PNUSAS392320 SAMN37855795-rid19849483.guided.21, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032795725.1_PDT001941975.1_genomic.fna	Salmonella_enterica	0.5212	168.267 KB	8	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZXF010000001.1 Salmonella enterica strain PNUSAS392486 SAMN37857244-rid19850763.denovo.01, whole genome shotgun sequence	80711..81148	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZXF010000059.1 Salmonella enterica strain PNUSAS392486 SAMN37857244-rid19850763.guided.41, whole genome shotgun sequence	5114..5551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNZXF010000049.1 Salmonella enterica strain PNUSAS392486 SAMN37857244-rid19850763.denovo.52, whole genome shotgun sequence	545..673																																																																	
GCA_032795745.1_PDT001941955.1_genomic.fna	Salmonella_enterica	0.5219	292.655 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZXG010000006.1 Salmonella enterica strain PNUSAS392454 SAMN37857132-rid19850603.denovo.06, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZXG010000057.1 Salmonella enterica strain PNUSAS392454 SAMN37857132-rid19850603.guided.37, whole genome shotgun sequence	2849..3286	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZXG010000015.1 Salmonella enterica strain PNUSAS392454 SAMN37857132-rid19850603.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNZXG010000015.1 Salmonella enterica strain PNUSAS392454 SAMN37857132-rid19850603.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNZXG010000001.1	401490..402358	100	869	0						
GCA_032795765.1_PDT001941913.1_genomic.fna	Salmonella_enterica	0.5202	493.917 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncFII(p96A)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNZXJ010000001.1 Salmonella enterica strain PNUSAS392432 SAMN37856650-rid19850243.denovo.01, whole genome shotgun sequence	790843..791280	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNZXJ010000030.1 Salmonella enterica strain PNUSAS392432 SAMN37856650-rid19850243.guided.18, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABNZXJ010000019.1 Salmonella enterica strain PNUSAS392432 SAMN37856650-rid19850243.denovo.22, whole genome shotgun sequence	239..369	enterobacteriales	Col440I	94.59	111 / 114	ABNZXJ010000021.1 Salmonella enterica strain PNUSAS392432 SAMN37856650-rid19850243.denovo.24, whole genome shotgun sequence	3175..3285		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABNZXJ010000016.1 Salmonella enterica strain PNUSAS392432 SAMN37856650-rid19850243.denovo.17, whole genome shotgun sequence	15755..16288																																									avrA	ABNZXJ010000002.1	560930..561799	99.425	870	0						
GCA_032796945.1_PDT001941914.1_genomic.fna	Salmonella_enterica	0.52	507.225 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZXV010000001.1 Salmonella enterica strain PNUSAS392412 SAMN37856674-rid19850253.denovo.01, whole genome shotgun sequence	149207..149644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZXV010000028.1 Salmonella enterica strain PNUSAS392412 SAMN37856674-rid19850253.guided.22, whole genome shotgun sequence	6775..7212	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.93	374 / 374	ABNZXV010000017.1 Salmonella enterica strain PNUSAS392412 SAMN37856674-rid19850253.denovo.18, whole genome shotgun sequence	771..1144																																																																	
GCA_032797025.1_PDT001941902.1_genomic.fna	Salmonella_enterica	0.5217	278.475 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZXW010000003.1 Salmonella enterica strain PNUSAS392134 SAMN37856566-rid19850983.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZXW010000037.1 Salmonella enterica strain PNUSAS392134 SAMN37856566-rid19850983.guided.23, whole genome shotgun sequence	24983..25420	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZXW010000022.1 Salmonella enterica strain PNUSAS392134 SAMN37856566-rid19850983.denovo.22, whole genome shotgun sequence	44723..45365	enterobacteriales	IncFII(S)	100	262 / 262	ABNZXW010000022.1 Salmonella enterica strain PNUSAS392134 SAMN37856566-rid19850983.denovo.22, whole genome shotgun sequence	29377..29638																																																avrA	ABNZXW010000001.1	446729..447597	100	869	0						
GCA_032797805.1_PDT001941994.1_genomic.fna	Salmonella_enterica	0.5211	306.971 KB	5	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABNZYC010000001.1 Salmonella enterica strain PNUSAS392635 SAMN37857387-rid19851123.denovo.01, whole genome shotgun sequence	344770..345207	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABNZYC010000035.1 Salmonella enterica strain PNUSAS392635 SAMN37857387-rid19851123.guided.25, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZYC010000006.1	150747..151616	99.54	870	0						
GCA_032797825.1_PDT001941988.1_genomic.fna	Salmonella_enterica	0.521	203.4 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZYD010000002.1 Salmonella enterica strain PNUSAS392638 SAMN37857381-rid19850883.denovo.02, whole genome shotgun sequence	63806..64243	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZYD010000054.1 Salmonella enterica strain PNUSAS392638 SAMN37857381-rid19850883.guided.29, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABNZYD010000013.1 Salmonella enterica strain PNUSAS392638 SAMN37857381-rid19850883.denovo.13, whole genome shotgun sequence	133949..134591																																																																	
GCA_032797845.1_PDT001941977.1_genomic.fna	Salmonella_enterica	0.5209	274.996 KB	7	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABNZYE010000013.1 Salmonella enterica strain PNUSAS392498 SAMN37857294-rid19850783.denovo.13, whole genome shotgun sequence	70815..71252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABNZYE010000035.1 Salmonella enterica strain PNUSAS392498 SAMN37857294-rid19850783.guided.16, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZYE010000001.1	94222..95091	98.966	870	0						
GCA_032797865.1_PDT001941932.1_genomic.fna	Salmonella_enterica	0.5212	207.445 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZYF010000001.1 Salmonella enterica strain PNUSAS392423 SAMN37856681-rid19850403.denovo.01, whole genome shotgun sequence	115023..115460	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZYF010000051.1 Salmonella enterica strain PNUSAS392423 SAMN37856681-rid19850403.guided.28, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZYF010000052.1 Salmonella enterica strain PNUSAS392423 SAMN37856681-rid19850403.guided.29, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																		avrA	ABNZYF010000002.1	174491..175359	99.77	870	0						
GCA_032797885.1_PDT001941924.1_genomic.fna	Salmonella_enterica	0.5212	225.553 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_412,thrA_2	Unknown	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_412	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZYH010000003.1 Salmonella enterica strain PNUSAS392434 SAMN37856637-rid19850333.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZYH010000041.1 Salmonella enterica strain PNUSAS392434 SAMN37856637-rid19850333.guided.22, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZYH010000016.1 Salmonella enterica strain PNUSAS392434 SAMN37856637-rid19850333.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNZYH010000016.1 Salmonella enterica strain PNUSAS392434 SAMN37856637-rid19850333.denovo.16, whole genome shotgun sequence	30407..30668		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABNZYH010000019.1 Salmonella enterica strain PNUSAS392434 SAMN37856637-rid19850333.denovo.19, whole genome shotgun sequence	67418..67559																																									avrA	ABNZYH010000002.1	401360..402228	100	869	0						
GCA_032798005.1_PDT001941972.1_genomic.fna	Salmonella_enterica	0.5194	205.814 KB	7	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZYG010000002.1 Salmonella enterica strain PNUSAS392483 SAMN37857232-rid19850733.denovo.02, whole genome shotgun sequence	370303..370740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZYG010000045.1 Salmonella enterica strain PNUSAS392483 SAMN37857232-rid19850733.guided.36, whole genome shotgun sequence	3966..4403	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032798065.1_PDT001941917.1_genomic.fna	Salmonella_enterica	0.5212	191.098 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZYI010000001.1 Salmonella enterica strain PNUSAS392132 SAMN37856549-rid19851003.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZYI010000050.1 Salmonella enterica strain PNUSAS392132 SAMN37856549-rid19851003.guided.34, whole genome shotgun sequence	18846..19283	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABNZYI010000002.1	165215..166083	99.77	870	0						
GCA_032798085.1_PDT001941927.1_genomic.fna	Salmonella_enterica	0.5226	215.319 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZYJ010000001.1 Salmonella enterica strain PNUSAS392416 SAMN37856667-rid19851023.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZYJ010000039.1 Salmonella enterica strain PNUSAS392416 SAMN37856667-rid19851023.guided.17, whole genome shotgun sequence	41797..42234	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZYJ010000003.1	39430..40299	99.655	870	0						
GCA_032798785.1_PDT001942376.1_genomic.fna	Salmonella_enterica	0.5228	490.392 KB	3	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZYO010000001.1 Salmonella enterica strain FDA1234226-S010-008 SAMN37858378-rid19852523.denovo.01, whole genome shotgun sequence	1047807..1048244	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZYO010000021.1 Salmonella enterica strain FDA1234226-S010-008 SAMN37858378-rid19852523.guided.17, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032798925.1_PDT001941960.1_genomic.fna	Salmonella_enterica	0.5205	723.668 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABNZYV010000001.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.denovo.01, whole genome shotgun sequence	639066..639503	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNZYV010000024.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.denovo.29, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABNZYV010000032.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.guided.09, whole genome shotgun sequence	16207..16644	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABNZYV010000036.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.guided.28, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABNZYV010000024.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.denovo.29, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABNZYV010000036.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.guided.28, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABNZYV010000022.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.denovo.26, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABNZYV010000035.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.guided.25, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABNZYV010000020.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.denovo.23, whole genome shotgun sequence	5394..6607	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNZYV010000037.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABNZYV010000024.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.denovo.29, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABNZYV010000036.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.guided.28, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABNZYV010000020.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.denovo.23, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABNZYV010000039.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.guided.35, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABNZYV010000020.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.denovo.23, whole genome shotgun sequence	3519..4793	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABNZYV010000038.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.guided.33, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABNZYV010000020.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.denovo.23, whole genome shotgun sequence	1888..2361	Trimethoprim	X00926	dfrA1	100	474/474	ABNZYV010000038.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.guided.33, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABNZYV010000018.1 Salmonella enterica strain PNUSAS392461 SAMN37857138-rid19850633.denovo.21, whole genome shotgun sequence	8402..8652																																																						avrA	ABNZYV010000002.1	553485..554354	99.77	870	0						
GCA_032798945.1_PDT001941909.1_genomic.fna	Salmonella_enterica	0.5225	242.72 KB	7	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABNZYU010000002.1 Salmonella enterica strain PNUSAS392433 SAMN37856638-rid19850213.denovo.02, whole genome shotgun sequence	149481..149918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABNZYU010000055.1 Salmonella enterica strain PNUSAS392433 SAMN37856638-rid19850213.guided.34, whole genome shotgun sequence	4265..4702	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABNZYU010000035.1 Salmonella enterica strain PNUSAS392433 SAMN37856638-rid19850213.denovo.38, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABNZYU010000037.1 Salmonella enterica strain PNUSAS392433 SAMN37856638-rid19850213.denovo.40, whole genome shotgun sequence	2528..2639																																																avrA	ABNZYU010000001.1	406070..406938	99.425	870	0						
GCA_032804365.1_PDT001942619.1_genomic.fna	Salmonella_enterica	0.5214	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZZL010000001.1 Salmonella enterica strain PNUSAS392811 SAMN37863627-rid19854163.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZZL010000022.1 Salmonella enterica strain PNUSAS392811 SAMN37863627-rid19854163.guided.20, whole genome shotgun sequence	2735..3172	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZZL010000012.1 Salmonella enterica strain PNUSAS392811 SAMN37863627-rid19854163.denovo.12, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABNZZL010000016.1 Salmonella enterica strain PNUSAS392811 SAMN37863627-rid19854163.denovo.16, whole genome shotgun sequence	3395..3656																																																avrA	ABNZZL010000002.1	553636..554505	99.54	870	0						
GCA_032804385.1_PDT001942620.1_genomic.fna	Salmonella_enterica	0.5221	275.894 KB	6	aroC_13,dnaN_46,hemD_25,hisD_49,purE_146,sucA_16,thrA_4	2020	8:i:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_46	hemD	100	100	hemD_25	hisD	100	100	hisD_49	purE	100	100	purE_146	sucA	100	100	sucA_16	thrA	100	100	thrA_4	8	i	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Bonariensis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZZI010000001.1 Salmonella enterica strain PNUSAS392815 SAMN37863635-rid19854173.denovo.01, whole genome shotgun sequence	37919..38356	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZZI010000040.1 Salmonella enterica strain PNUSAS392815 SAMN37863635-rid19854173.guided.30, whole genome shotgun sequence	7529..7966	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZZI010000006.1	181221..182089	98.736	870	0						
GCA_032804405.1_PDT001942617.1_genomic.fna	Salmonella_enterica	0.5215	396.728 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNZZH010000001.1 Salmonella enterica strain PNUSAS392835 SAMN37863612-rid19854143.denovo.01, whole genome shotgun sequence	835210..835647	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNZZH010000022.1 Salmonella enterica strain PNUSAS392835 SAMN37863612-rid19854143.guided.11, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZZH010000006.1	148520..149387	99.54	870	0						
GCA_032804425.1_PDT001942618.1_genomic.fna	Salmonella_enterica	0.5216	680.327 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZZE010000001.1 Salmonella enterica strain PNUSAS392841 SAMN37863621-rid19854153.denovo.01, whole genome shotgun sequence	397877..398314	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZZE010000038.1 Salmonella enterica strain PNUSAS392841 SAMN37863621-rid19854153.guided.13, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZZE010000004.1	544607..545475	99.425	870	0						
GCA_032804435.1_PDT001942616.1_genomic.fna	Salmonella_enterica	0.521	594.352 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZZK010000001.1 Salmonella enterica strain PNUSAS392854 SAMN37863645-rid19854133.denovo.01, whole genome shotgun sequence	639469..639906	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZZK010000040.1 Salmonella enterica strain PNUSAS392854 SAMN37863645-rid19854133.guided.08, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZZK010000003.1	499119..499987	99.425	870	0						
GCA_032804465.1_PDT001942614.1_genomic.fna	Salmonella_enterica	0.5203	492.387 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABNZZJ010000001.1 Salmonella enterica strain PNUSAS392819 SAMN37863618-rid19854113.denovo.01, whole genome shotgun sequence	774424..774861	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABNZZJ010000023.1 Salmonella enterica strain PNUSAS392819 SAMN37863618-rid19854113.guided.17, whole genome shotgun sequence	11737..12174	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABNZZJ010000012.1 Salmonella enterica strain PNUSAS392819 SAMN37863618-rid19854113.denovo.13, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABNZZJ010000016.1 Salmonella enterica strain PNUSAS392819 SAMN37863618-rid19854113.denovo.19, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	98.93	374 / 374	ABNZZJ010000013.1 Salmonella enterica strain PNUSAS392819 SAMN37863618-rid19854113.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABNZZJ010000002.1	553552..554421	99.54	870	0						
GCA_032804485.1_PDT001942615.1_genomic.fna	Salmonella_enterica	0.5214	699.691 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABNZZG010000001.1 Salmonella enterica strain PNUSAS392824 SAMN37863624-rid19854123.denovo.01, whole genome shotgun sequence	596591..597028	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABNZZG010000017.1 Salmonella enterica strain PNUSAS392824 SAMN37863624-rid19854123.guided.10, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZZG010000002.1	544607..545475	99.425	870	0						
GCA_032804505.1_PDT001942613.1_genomic.fna	Salmonella_enterica	0.5211	282.835 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	0		1	Col440I	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZZF010000001.1 Salmonella enterica strain PNUSAS392831 SAMN37863613-rid19854103.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZZF010000040.1 Salmonella enterica strain PNUSAS392831 SAMN37863613-rid19854103.guided.23, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABNZZF010000041.1 Salmonella enterica strain PNUSAS392831 SAMN37863613-rid19854103.guided.24, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																							enterobacteriales	Col440I	93.81	113 / 114	ABNZZF010000031.1 Salmonella enterica strain PNUSAS392831 SAMN37863613-rid19854103.denovo.35, whole genome shotgun sequence	2528..2639																																																						avrA	ABNZZF010000002.1	621482..622351	99.885	870	0						
GCA_032804525.1_PDT001942611.1_genomic.fna	Salmonella_enterica	0.5221	730.316 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNZZN010000001.1 Salmonella enterica strain PNUSAS392827 SAMN37863647-rid19854083.denovo.01, whole genome shotgun sequence	1045231..1045668	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNZZN010000019.1 Salmonella enterica strain PNUSAS392827 SAMN37863647-rid19854083.guided.09, whole genome shotgun sequence	42403..42840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZZN010000002.1	659237..660106	99.54	870	0						
GCA_032804545.1_PDT001942612.1_genomic.fna	Salmonella_enterica	0.5219	341.38 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABNZZM010000003.1 Salmonella enterica strain PNUSAS392832 SAMN37863632-rid19854093.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.74	379/438	ABNZZM010000041.1 Salmonella enterica strain PNUSAS392832 SAMN37863632-rid19854093.guided.32, whole genome shotgun sequence	1..379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABNZZM010000015.1 Salmonella enterica strain PNUSAS392832 SAMN37863632-rid19854093.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABNZZM010000015.1 Salmonella enterica strain PNUSAS392832 SAMN37863632-rid19854093.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABNZZM010000001.1	446538..447406	100	869	0						
GCA_032804565.1_PDT001942610.1_genomic.fna	Salmonella_enterica	0.5195	273.314 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,floR,floR,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZZP010000001.1 Salmonella enterica strain PNUSAS392853 SAMN37863636-rid19854073.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABNZZP010000038.1 Salmonella enterica strain PNUSAS392853 SAMN37863636-rid19854073.denovo.40, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNZZP010000038.1 Salmonella enterica strain PNUSAS392853 SAMN37863636-rid19854073.denovo.40, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aph(4)-Ia	100	1026/1026	ABNZZP010000050.1 Salmonella enterica strain PNUSAS392853 SAMN37863636-rid19854073.guided.43, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABNZZP010000050.1 Salmonella enterica strain PNUSAS392853 SAMN37863636-rid19854073.guided.43, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABNZZP010000051.1 Salmonella enterica strain PNUSAS392853 SAMN37863636-rid19854073.guided.44, whole genome shotgun sequence	1413..1850	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	ABNZZP010000035.1 Salmonella enterica strain PNUSAS392853 SAMN37863636-rid19854073.denovo.36, whole genome shotgun sequence	3509..4722	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABNZZP010000049.1 Salmonella enterica strain PNUSAS392853 SAMN37863636-rid19854073.guided.37, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	dfrA14	100	474/474	ABNZZP010000033.1 Salmonella enterica strain PNUSAS392853 SAMN37863636-rid19854073.denovo.34, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABNZZP010000053.1 Salmonella enterica strain PNUSAS392853 SAMN37863636-rid19854073.guided.46, whole genome shotgun sequence	491..964	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABNZZP010000028.1 Salmonella enterica strain PNUSAS392853 SAMN37863636-rid19854073.denovo.28, whole genome shotgun sequence	10192..10751	enterobacteriales	IncX1	98.93	374 / 374	ABNZZP010000023.1 Salmonella enterica strain PNUSAS392853 SAMN37863636-rid19854073.denovo.23, whole genome shotgun sequence	32011..32384																																																avrA	ABNZZP010000002.1	94085..94954	99.655	870	0						
GCA_032804585.1_PDT001942609.1_genomic.fna	Salmonella_enterica	0.5217	353.129 KB	5	aroC_84,dnaN_76,hemD_38,hisD_16,purE_12,sucA_13,thrA_4	226	6,14:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_76	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	6,14	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Carrau		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZZO010000001.1 Salmonella enterica strain PNUSAS392836 SAMN37863626-rid19854063.denovo.01, whole genome shotgun sequence	392377..392814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZZO010000040.1 Salmonella enterica strain PNUSAS392836 SAMN37863626-rid19854063.guided.32, whole genome shotgun sequence	1806..2243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZZO010000005.1	94210..95078	98.851	870	0						
GCA_032804605.1_PDT001942608.1_genomic.fna	Salmonella_enterica	0.5211	697.473 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZZQ010000001.1 Salmonella enterica strain PNUSAS392810 SAMN37863643-rid19854053.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZZQ010000036.1 Salmonella enterica strain PNUSAS392810 SAMN37863643-rid19854053.guided.23, whole genome shotgun sequence	1162..1599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZZQ010000003.1	504152..505022	99.196	871	0						
GCA_032804645.1_PDT001942607.1_genomic.fna	Salmonella_enterica	0.5216	365.302 KB	6	aroC_84,dnaN_76,hemD_38,hisD_16,purE_12,sucA_13,thrA_4	226	6,14:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_76	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	6,14	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Carrau		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNZZT010000001.1 Salmonella enterica strain PNUSAS392837 SAMN37863615-rid19854043.denovo.01, whole genome shotgun sequence	392377..392814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABNZZT010000040.1 Salmonella enterica strain PNUSAS392837 SAMN37863615-rid19854043.guided.24, whole genome shotgun sequence	30910..31347	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZZT010000003.1	179652..180520	98.851	870	0						
GCA_032804665.1_PDT001942606.1_genomic.fna	Salmonella_enterica	0.5203	282.836 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aph(6)-Id,aph(3'')-Ib,aadA1,blaTEM-1B,blaTEM-1B,cmlA1,cmlA1,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZZX010000001.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.denovo.01, whole genome shotgun sequence	582533..582970	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNZZX010000031.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.denovo.33, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABNZZX010000031.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.denovo.33, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABNZZX010000046.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.denovo.55, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZZX010000046.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.denovo.55, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABNZZX010000056.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.guided.13, whole genome shotgun sequence	41183..41620	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABNZZX010000061.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.guided.47, whole genome shotgun sequence	1386..2177	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	837/837	ABNZZX010000064.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.guided.54, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNZZX010000064.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.guided.54, whole genome shotgun sequence	69..872	Streptomycin	AF321551	aadA1	100	792/792	ABNZZX010000065.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.guided.56, whole genome shotgun sequence	143..934	Spectinomycin, Streptomycin	JQ414041	blaTEM-1B	100	861/861	ABNZZX010000044.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.denovo.52, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABNZZX010000063.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.guided.51, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABNZZX010000031.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.denovo.33, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABNZZX010000062.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.guided.50, whole genome shotgun sequence	92..1351	Chloramphenicol	M64556	sul2	100	816/816	ABNZZX010000066.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.guided.58, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABNZZX010000067.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.guided.59, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABNZZX010000068.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.guided.60, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABNZZX010000069.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.guided.61, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABNZZX010000030.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.denovo.32, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNZZX010000031.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.denovo.33, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABNZZX010000058.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.guided.35, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABNZZX010000060.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.guided.42, whole genome shotgun sequence	873..2792	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABNZZX010000031.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.denovo.33, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABNZZX010000061.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.guided.47, whole genome shotgun sequence	481..978	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col156	94.81	154 / 154	ABNZZX010000035.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.denovo.39, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABNZZX010000040.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.denovo.45, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABNZZX010000045.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.denovo.53, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABNZZX010000028.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.denovo.30, whole genome shotgun sequence	19811..20492		enterobacteriales	IncFIC(FII)	94	500 / 499	ABNZZX010000021.1 Salmonella enterica strain PNUSAS392848 SAMN37863617-rid19854033.denovo.22, whole genome shotgun sequence	55745..56241																											avrA	ABNZZX010000002.1	508765..509634	99.885	870	0						
GCA_032804705.1_PDT001942605.1_genomic.fna	Salmonella_enterica	0.5198	144.241 KB	12	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABNZZW010000001.1 Salmonella enterica strain PNUSAS392843 SAMN37863651-rid19854023.denovo.01, whole genome shotgun sequence	187793..188230	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABNZZW010000061.1 Salmonella enterica strain PNUSAS392843 SAMN37863651-rid19854023.guided.51, whole genome shotgun sequence	3293..3730	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABNZZW010000004.1 Salmonella enterica strain PNUSAS392843 SAMN37863651-rid19854023.denovo.04, whole genome shotgun sequence	160606..161028	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABNZZW010000060.1 Salmonella enterica strain PNUSAS392843 SAMN37863651-rid19854023.guided.48, whole genome shotgun sequence	7915..8337	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	ABNZZW010000050.1 Salmonella enterica strain PNUSAS392843 SAMN37863651-rid19854023.denovo.54, whole genome shotgun sequence	1853..3058	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNZZW010000062.1 Salmonella enterica strain PNUSAS392843 SAMN37863651-rid19854023.guided.52, whole genome shotgun sequence	1874..3079	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNZZW010000051.1 Salmonella enterica strain PNUSAS392843 SAMN37863651-rid19854023.denovo.55, whole genome shotgun sequence	186..316																																																						avrA	ABNZZW010000002.1	85770..86639	99.655	870	0						
GCA_032804725.1_PDT001942604.1_genomic.fna	Salmonella_enterica	0.522	341.185 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABNZZU010000001.1 Salmonella enterica strain PNUSAS392818 SAMN37863628-rid19854013.denovo.01, whole genome shotgun sequence	207562..207999	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABNZZU010000050.1 Salmonella enterica strain PNUSAS392818 SAMN37863628-rid19854013.guided.31, whole genome shotgun sequence	10652..11089	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABNZZU010000035.1 Salmonella enterica strain PNUSAS392818 SAMN37863628-rid19854013.denovo.38, whole genome shotgun sequence	548..676	enterobacteriales	IncFIB(S)	100	643 / 643	ABNZZU010000017.1 Salmonella enterica strain PNUSAS392818 SAMN37863628-rid19854013.denovo.17, whole genome shotgun sequence	36049..36691		enterobacteriales	IncFII(S)	100	262 / 262	ABNZZU010000017.1 Salmonella enterica strain PNUSAS392818 SAMN37863628-rid19854013.denovo.17, whole genome shotgun sequence	51776..52037																																									avrA	ABNZZU010000002.1	450786..451655	99.885	870	0						
GCA_032804745.1_PDT001942603.1_genomic.fna	Salmonella_enterica	0.5213	237.962 KB	7	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABNZZV010000008.1 Salmonella enterica strain PNUSAS392852 SAMN37863619-rid19854003.denovo.08, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABNZZV010000054.1 Salmonella enterica strain PNUSAS392852 SAMN37863619-rid19854003.guided.37, whole genome shotgun sequence	591..1028	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZZV010000001.1	145044..145912	99.31	870	0						
GCA_032804765.1_PDT001942601.1_genomic.fna	Salmonella_enterica	0.5196	383.728 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	7	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,fosA7,fosA7,qnrS1,qnrS1,sul3,sul3,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	2	Col440I,IncX1,IncX1	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAAC010000001.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.denovo.01, whole genome shotgun sequence	492511..492948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAAC010000041.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.guided.20, whole genome shotgun sequence	44275..44712	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOAAC010000031.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.denovo.37, whole genome shotgun sequence	121..981	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOAAC010000046.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.guided.36, whole genome shotgun sequence	162..1022	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	fosA7	97.16	423/423	ABOAAC010000006.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.denovo.06, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOAAC010000045.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.guided.33, whole genome shotgun sequence	8574..8996	Fosfomycin	LAPJ01000014	qnrS1	100	657/657	ABOAAC010000027.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.denovo.29, whole genome shotgun sequence	1013..1669	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOAAC010000044.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.guided.31, whole genome shotgun sequence	1054..1710	Ciprofloxacin	AB187515	sul3	100	792/792	ABOAAC010000031.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.denovo.37, whole genome shotgun sequence	1239..2030	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOAAC010000046.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.guided.36, whole genome shotgun sequence	1280..2071	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABOAAC010000027.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.denovo.29, whole genome shotgun sequence	6324..7523	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOAAC010000044.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.guided.31, whole genome shotgun sequence	6365..7564	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOAAC010000035.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.denovo.41, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	ABOAAC010000047.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.guided.42, whole genome shotgun sequence	864..1337	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.74	114 / 114	ABOAAC010000030.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.denovo.35, whole genome shotgun sequence	2725..2838	enterobacteriales	IncX1	98.66	374 / 374	ABOAAC010000027.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.denovo.29, whole genome shotgun sequence	14448..14821		enterobacteriales	IncX1	98.66	374 / 374	ABOAAC010000044.1 Salmonella enterica strain PNUSAS392806 SAMN37863638-rid19853983.guided.31, whole genome shotgun sequence	14489..14862																																									avrA	ABOAAC010000002.1	134347..135216	99.195	870	0						
GCA_032804785.1_PDT001942602.1_genomic.fna	Salmonella_enterica	0.521	430.367 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZZY010000001.1 Salmonella enterica strain PNUSAS392817 SAMN37863610-rid19853993.denovo.01, whole genome shotgun sequence	383562..383999	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZZY010000033.1 Salmonella enterica strain PNUSAS392817 SAMN37863610-rid19853993.guided.14, whole genome shotgun sequence	3282..3719	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZZY010000003.1	514965..515833	99.195	870	0						
GCA_032804805.1_PDT001942600.1_genomic.fna	Salmonella_enterica	0.5202	386.164 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABNZZZ010000001.1 Salmonella enterica strain PNUSAS392813 SAMN37863631-rid19853973.denovo.01, whole genome shotgun sequence	385109..385546	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABNZZZ010000051.1 Salmonella enterica strain PNUSAS392813 SAMN37863631-rid19853973.guided.11, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABNZZZ010000002.1	504316..505186	99.196	871	0						
GCA_032804825.1_PDT001942599.1_genomic.fna	Salmonella_enterica	0.5215	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pHCM2)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAAA010000001.1 Salmonella enterica strain PNUSAS392812 SAMN37863639-rid19853963.denovo.01, whole genome shotgun sequence	781493..781930	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAAA010000028.1 Salmonella enterica strain PNUSAS392812 SAMN37863639-rid19853963.guided.13, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	98.63	875 / 875	ABOAAA010000012.1 Salmonella enterica strain PNUSAS392812 SAMN37863639-rid19853963.denovo.12, whole genome shotgun sequence	12149..13023																																																						avrA	ABOAAA010000002.1	180173..181042	98.966	870	0						
GCA_032804845.1_PDT001942596.1_genomic.fna	Salmonella_enterica	0.5216	503.483 KB	2	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOAAG010000001.1 Salmonella enterica strain PNUSAS392845 SAMN37863614-rid19853933.denovo.01, whole genome shotgun sequence	813844..814281	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOAAG010000031.1 Salmonella enterica strain PNUSAS392845 SAMN37863614-rid19853933.guided.16, whole genome shotgun sequence	22824..23261	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAAG010000005.1	93998..94867	99.425	870	0						
GCA_032804865.1_PDT001942597.1_genomic.fna	Salmonella_enterica	0.5218	194.559 KB	10	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAAD010000001.1 Salmonella enterica strain PNUSAS392844 SAMN37863637-rid19853943.denovo.01, whole genome shotgun sequence	68194..68631	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAAD010000049.1 Salmonella enterica strain PNUSAS392844 SAMN37863637-rid19853943.guided.37, whole genome shotgun sequence	12928..13365	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOAAD010000023.1 Salmonella enterica strain PNUSAS392844 SAMN37863637-rid19853943.denovo.23, whole genome shotgun sequence	66555..66696																																																																	
GCA_032804885.1_PDT001942598.1_genomic.fna	Salmonella_enterica	0.5214	682.831 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOAAB010000001.1 Salmonella enterica strain PNUSAS392839 SAMN37863634-rid19853953.denovo.01, whole genome shotgun sequence	510644..511081	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOAAB010000024.1 Salmonella enterica strain PNUSAS392839 SAMN37863634-rid19853953.guided.20, whole genome shotgun sequence	1223..1660	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOAAB010000010.1 Salmonella enterica strain PNUSAS392839 SAMN37863634-rid19853953.denovo.10, whole genome shotgun sequence	70374..70515																																																						avrA	ABOAAB010000004.1	544607..545475	99.425	870	0						
GCA_032804905.1_PDT001942594.1_genomic.fna	Salmonella_enterica	0.5216	1.086 MB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOAAE010000001.1 Salmonella enterica strain PNUSAS392840 SAMN37863648-rid19853913.denovo.01, whole genome shotgun sequence	596449..596886	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOAAE010000023.1 Salmonella enterica strain PNUSAS392840 SAMN37863648-rid19853913.guided.18, whole genome shotgun sequence	2181..2618	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAAE010000003.1	406597..407465	99.425	870	0						
GCA_032804925.1_PDT001942595.1_genomic.fna	Salmonella_enterica	0.5202	279.271 KB	7	aroC_42,dnaN_11,hemD_48,hisD_149,purE_12,sucA_13,thrA_4	1575	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAAF010000001.1 Salmonella enterica strain PNUSAS392809 SAMN37863633-rid19853923.denovo.001, whole genome shotgun sequence	148188..148625	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAAF010000104.1 Salmonella enterica strain PNUSAS392809 SAMN37863633-rid19853923.guided.022, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOAAF010000030.1 Salmonella enterica strain PNUSAS392809 SAMN37863633-rid19853923.denovo.031, whole genome shotgun sequence	11447..12089	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABOAAF010000028.1 Salmonella enterica strain PNUSAS392809 SAMN37863633-rid19853923.denovo.029, whole genome shotgun sequence	18862..19444																																																											
GCA_032804945.1_PDT001942591.1_genomic.fna	Salmonella_enterica	0.5218	227.9 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAAI010000003.1 Salmonella enterica strain PNUSAS392807 SAMN37863642-rid19853883.denovo.03, whole genome shotgun sequence	62306..62743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAAI010000042.1 Salmonella enterica strain PNUSAS392807 SAMN37863642-rid19853883.guided.16, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032804955.1_PDT001942593.1_genomic.fna	Salmonella_enterica	0.5215	699.691 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOAAK010000001.1 Salmonella enterica strain PNUSAS392842 SAMN37863609-rid19853903.denovo.01, whole genome shotgun sequence	596592..597029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOAAK010000019.1 Salmonella enterica strain PNUSAS392842 SAMN37863609-rid19853903.guided.11, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAAK010000002.1	544607..545475	99.425	870	0						
GCA_032804985.1_PDT001942592.1_genomic.fna	Salmonella_enterica	0.5216	545.8 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOAAJ010000001.1 Salmonella enterica strain PNUSAS392823 SAMN37863616-rid19853893.denovo.01, whole genome shotgun sequence	639046..639483	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOAAJ010000039.1 Salmonella enterica strain PNUSAS392823 SAMN37863616-rid19853893.guided.13, whole genome shotgun sequence	34093..34530	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAAJ010000003.1	394961..395829	99.425	870	0						
GCA_032805005.1_PDT001942590.1_genomic.fna	Salmonella_enterica	0.5204	695.726 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAAH010000001.1 Salmonella enterica strain PNUSAS392822 SAMN37863649-rid19853873.denovo.01, whole genome shotgun sequence	642724..643161	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAAH010000018.1 Salmonella enterica strain PNUSAS392822 SAMN37863649-rid19853873.guided.12, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032805025.1_PDT001942589.1_genomic.fna	Salmonella_enterica	0.5202	344.578 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(Yp),IncI2(Delta)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOAAM010000002.1 Salmonella enterica strain PNUSAS392829 SAMN37863629-rid19853863.denovo.02, whole genome shotgun sequence	260159..260596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOAAM010000044.1 Salmonella enterica strain PNUSAS392829 SAMN37863629-rid19853863.guided.35, whole genome shotgun sequence	1335..1772	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOAAM010000026.1 Salmonella enterica strain PNUSAS392829 SAMN37863629-rid19853863.denovo.26, whole genome shotgun sequence	4536..5178	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOAAM010000025.1 Salmonella enterica strain PNUSAS392829 SAMN37863629-rid19853863.denovo.25, whole genome shotgun sequence	10977..11203		enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABOAAM010000019.1 Salmonella enterica strain PNUSAS392829 SAMN37863629-rid19853863.denovo.19, whole genome shotgun sequence	29116..29437																																																				
GCA_032805045.1_PDT001942587.1_genomic.fna	Salmonella_enterica	0.5229	339.214 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAAL010000001.1 Salmonella enterica strain PNUSAS392838 SAMN37863622-rid19853843.denovo.01, whole genome shotgun sequence	15809..16246	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAAL010000040.1 Salmonella enterica strain PNUSAS392838 SAMN37863622-rid19853843.guided.27, whole genome shotgun sequence	3481..3918	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032805065.1_PDT001942588.1_genomic.fna	Salmonella_enterica	0.5213	347.446 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOAAO010000003.1 Salmonella enterica strain PNUSAS392833 SAMN37863641-rid19853853.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOAAO010000040.1 Salmonella enterica strain PNUSAS392833 SAMN37863641-rid19853853.guided.18, whole genome shotgun sequence	12742..13179	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOAAO010000015.1 Salmonella enterica strain PNUSAS392833 SAMN37863641-rid19853853.denovo.15, whole genome shotgun sequence	48433..49075	enterobacteriales	IncFII(S)	100	262 / 262	ABOAAO010000015.1 Salmonella enterica strain PNUSAS392833 SAMN37863641-rid19853853.denovo.15, whole genome shotgun sequence	64160..64421																																																avrA	ABOAAO010000001.1	446538..447406	100	869	0						
GCA_032805085.1_PDT001942586.1_genomic.fna	Salmonella_enterica	0.5212	660.691 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOAAN010000001.1 Salmonella enterica strain PNUSAS392847 SAMN37863644-rid19853833.denovo.01, whole genome shotgun sequence	596449..596886	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOAAN010000020.1 Salmonella enterica strain PNUSAS392847 SAMN37863644-rid19853833.guided.10, whole genome shotgun sequence	41963..42400	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAAN010000003.1	509827..510695	99.425	870	0						
GCA_032805105.1_PDT001942585.1_genomic.fna	Salmonella_enterica	0.521	373.522 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOAAQ010000001.1 Salmonella enterica strain PNUSAS392851 SAMN37863608-rid19853823.denovo.01, whole genome shotgun sequence	542588..543025	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOAAQ010000055.1 Salmonella enterica strain PNUSAS392851 SAMN37863608-rid19853823.guided.32, whole genome shotgun sequence	3526..3963	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOAAQ010000026.1 Salmonella enterica strain PNUSAS392851 SAMN37863608-rid19853823.denovo.27, whole genome shotgun sequence	11447..12089																																																						avrA	ABOAAQ010000005.1	93871..94740	99.425	870	0						
GCA_032805125.1_PDT001942584.1_genomic.fna	Salmonella_enterica	0.5214	478.724 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAAS010000001.1 Salmonella enterica strain PNUSAS392830 SAMN37863630-rid19853813.denovo.01, whole genome shotgun sequence	774538..774975	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAAS010000023.1 Salmonella enterica strain PNUSAS392830 SAMN37863630-rid19853813.guided.16, whole genome shotgun sequence	3413..3850	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAAS010000012.1 Salmonella enterica strain PNUSAS392830 SAMN37863630-rid19853813.denovo.12, whole genome shotgun sequence	40524..41166	enterobacteriales	IncFII(S)	100	262 / 262	ABOAAS010000016.1 Salmonella enterica strain PNUSAS392830 SAMN37863630-rid19853813.denovo.18, whole genome shotgun sequence	3391..3652																																																avrA	ABOAAS010000002.1	553547..554416	99.54	870	0						
GCA_032805165.1_PDT001942582.1_genomic.fna	Salmonella_enterica	0.5215	699.691 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOAAR010000001.1 Salmonella enterica strain PNUSAS392814 SAMN37863650-rid19853793.denovo.01, whole genome shotgun sequence	510636..511073	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOAAR010000020.1 Salmonella enterica strain PNUSAS392814 SAMN37863650-rid19853793.guided.12, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAAR010000002.1	544607..545475	99.425	870	0						
GCA_032805185.1_PDT001942583.1_genomic.fna	Salmonella_enterica	0.521	430.207 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col8282,IncI1-I(Alpha)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAAP010000003.1 Salmonella enterica strain PNUSAS392826 SAMN37863640-rid19853803.denovo.03, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAAP010000034.1 Salmonella enterica strain PNUSAS392826 SAMN37863640-rid19853803.guided.25, whole genome shotgun sequence	859..1296	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col8282	90.59	202 / 207	ABOAAP010000023.1 Salmonella enterica strain PNUSAS392826 SAMN37863640-rid19853803.denovo.24, whole genome shotgun sequence	3971..4172	enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	ABOAAP010000013.1 Salmonella enterica strain PNUSAS392826 SAMN37863640-rid19853803.denovo.13, whole genome shotgun sequence	68620..68759																																																avrA	ABOAAP010000001.1	514960..515828	99.195	870	0						
GCA_032805205.1_PDT001942581.1_genomic.fna	Salmonella_enterica	0.5208	466.216 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAAT010000001.1 Salmonella enterica strain PNUSAS392850 SAMN37863620-rid19853783.denovo.01, whole genome shotgun sequence	386217..386654	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAAT010000045.1 Salmonella enterica strain PNUSAS392850 SAMN37863620-rid19853783.guided.21, whole genome shotgun sequence	7536..7973	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAAT010000007.1	37737..38607	99.196	871	0						
GCA_032805225.1_PDT001942580.1_genomic.fna	Salmonella_enterica	0.5198	412.066 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pKPC-CAV1193	aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAAW010000001.1 Salmonella enterica strain PNUSAS392828 SAMN37863625-rid19853773.denovo.01, whole genome shotgun sequence	477459..477896	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAAW010000047.1 Salmonella enterica strain PNUSAS392828 SAMN37863625-rid19853773.guided.11, whole genome shotgun sequence	11140..11577	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1193	98.2	612 / 612	ABOAAW010000020.1 Salmonella enterica strain PNUSAS392828 SAMN37863625-rid19853773.denovo.22, whole genome shotgun sequence	173..784																																																						avrA	ABOAAW010000002.1	504322..505192	99.196	871	0						
GCA_032805245.1_PDT001942578.1_genomic.fna	Salmonella_enterica	0.5229	471.873 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAAV010000001.1 Salmonella enterica strain PNUSAS392820 SAMN37863611-rid19853753.denovo.01, whole genome shotgun sequence	825824..826261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAAV010000028.1 Salmonella enterica strain PNUSAS392820 SAMN37863611-rid19853753.guided.16, whole genome shotgun sequence	9346..9783	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAAV010000003.1	183129..183998	98.966	870	0						
GCA_032805255.1_PDT001942579.1_genomic.fna	Salmonella_enterica	0.521	466.192 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAAU010000001.1 Salmonella enterica strain PNUSAS392816 SAMN37863623-rid19853763.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAAU010000037.1 Salmonella enterica strain PNUSAS392816 SAMN37863623-rid19853763.guided.22, whole genome shotgun sequence	2520..2957	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAAU010000009.1	150660..151530	99.196	871	0						
GCA_032805285.1_PDT001942577.1_genomic.fna	Salmonella_enterica	0.5216	202.442 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAAY010000007.1 Salmonella enterica strain PNUSAS392821 SAMN37863646-rid19853743.denovo.07, whole genome shotgun sequence	144422..144859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAAY010000052.1 Salmonella enterica strain PNUSAS392821 SAMN37863646-rid19853743.guided.42, whole genome shotgun sequence	672..1109	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032805305.1_PDT001942576.1_genomic.fna	Salmonella_enterica	0.521	489.917 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAAX010000001.1 Salmonella enterica strain PNUSAS392846 SAMN37863419-rid19853733.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAAX010000020.1 Salmonella enterica strain PNUSAS392846 SAMN37863419-rid19853733.guided.12, whole genome shotgun sequence	26808..27245	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAAX010000011.1 Salmonella enterica strain PNUSAS392846 SAMN37863419-rid19853733.denovo.11, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOAAX010000011.1 Salmonella enterica strain PNUSAS392846 SAMN37863419-rid19853733.denovo.11, whole genome shotgun sequence	4416..4677																																																avrA	ABOAAX010000002.1	584148..585017	99.54	870	0						
GCA_032805325.1_PDT001942575.1_genomic.fna	Salmonella_enterica	0.522	699.691 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOAAZ010000001.1 Salmonella enterica strain PNUSAS392825 SAMN37863415-rid19853723.denovo.01, whole genome shotgun sequence	596407..596844	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOAAZ010000019.1 Salmonella enterica strain PNUSAS392825 SAMN37863415-rid19853723.guided.14, whole genome shotgun sequence	2797..3234	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAAZ010000002.1	544619..545487	99.425	870	0						
GCA_032805345.1_PDT001942573.1_genomic.fna	Salmonella_enterica	0.5201	412.066 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOABC010000001.1 Salmonella enterica strain PNUSAS392849 SAMN37863416-rid19853703.denovo.01, whole genome shotgun sequence	385109..385546	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOABC010000055.1 Salmonella enterica strain PNUSAS392849 SAMN37863416-rid19853703.guided.11, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOABC010000002.1	504316..505186	99.196	871	0						
GCA_032805365.1_PDT001942574.1_genomic.fna	Salmonella_enterica	0.5207	697.463 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOABA010000001.1 Salmonella enterica strain PNUSAS392808 SAMN37863417-rid19853713.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOABA010000046.1 Salmonella enterica strain PNUSAS392808 SAMN37863417-rid19853713.guided.14, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOABA010000003.1	504146..505016	99.196	871	0						
GCA_032805385.1_PDT001942572.1_genomic.fna	Salmonella_enterica	0.5213	376.533 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOABD010000002.1 Salmonella enterica strain PNUSAS392834 SAMN37863418-rid19853693.denovo.02, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOABD010000038.1 Salmonella enterica strain PNUSAS392834 SAMN37863418-rid19853693.guided.30, whole genome shotgun sequence	4018..4455	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOABD010000001.1	452553..453421	100	869	0						
GCA_032805405.1_PDT001942571.1_genomic.fna	Salmonella_enterica	0.5214	87.122 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOABB010000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314588 SAMN37863394-rid19853683.denovo.003, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOABB010000125.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314588 SAMN37863394-rid19853683.guided.062, whole genome shotgun sequence	13664..14101	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOABB010000058.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314588 SAMN37863394-rid19853683.denovo.058, whole genome shotgun sequence	14271..15416	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOABB010000126.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314588 SAMN37863394-rid19853683.guided.069, whole genome shotgun sequence	13901..15046	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOABB010000085.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314588 SAMN37863394-rid19853683.denovo.089, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOABB010000128.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314588 SAMN37863394-rid19853683.guided.090, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOABB010000085.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314588 SAMN37863394-rid19853683.denovo.089, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOABB010000128.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314588 SAMN37863394-rid19853683.guided.090, whole genome shotgun sequence	4544..5743	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOABB010000094.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314588 SAMN37863394-rid19853683.denovo.099, whole genome shotgun sequence	371..501	enterobacteriales	IncC	100	417 / 417	ABOABB010000040.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314588 SAMN37863394-rid19853683.denovo.040, whole genome shotgun sequence	38349..38765																																																avrA	ABOABB010000009.1	104978..105847	99.885	870	0						
GCA_032805425.1_PDT001942570.1_genomic.fna	Salmonella_enterica	0.521	96.847 KB	17	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	-:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOABE010000005.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314587 SAMN37863393-rid19853673.denovo.005, whole genome shotgun sequence	15524..15961	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOABE010000069.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314587 SAMN37863393-rid19853673.denovo.073, whole genome shotgun sequence	6193..7029	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOABE010000069.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314587 SAMN37863393-rid19853673.denovo.073, whole genome shotgun sequence	7029..7832	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOABE010000126.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314587 SAMN37863393-rid19853673.guided.053, whole genome shotgun sequence	10869..11306	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOABE010000130.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314587 SAMN37863393-rid19853673.guided.083, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOABE010000130.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314587 SAMN37863393-rid19853673.guided.083, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	ABOABE010000011.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314587 SAMN37863393-rid19853673.denovo.011, whole genome shotgun sequence	94643..95065	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	ABOABE010000127.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314587 SAMN37863393-rid19853673.guided.062, whole genome shotgun sequence	14951..15373	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	ABOABE010000092.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314587 SAMN37863393-rid19853673.denovo.099, whole genome shotgun sequence	1647..2852	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOABE010000132.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314587 SAMN37863393-rid19853673.guided.098, whole genome shotgun sequence	1688..2893	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOABE010000085.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314587 SAMN37863393-rid19853673.denovo.091, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOABE010000069.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314587 SAMN37863393-rid19853673.denovo.073, whole genome shotgun sequence	5309..5570		enterobacteriales	IncFII	96.95	262 / 261	ABOABE010000130.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314587 SAMN37863393-rid19853673.guided.083, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOABE010000065.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22314587 SAMN37863393-rid19853673.denovo.068, whole genome shotgun sequence	2153..2525																																		avrA	ABOABE010000007.1	169095..169964	99.08	870	0						
GCA_032805505.1_PDT001942565.1_genomic.fna	Salmonella_enterica	0.5195	92.332 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOABM010000017.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314586 SAMN37863392-rid19853623.denovo.017, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOABM010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314586 SAMN37863392-rid19853623.denovo.076, whole genome shotgun sequence	5750..6586	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOABM010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314586 SAMN37863392-rid19853623.denovo.076, whole genome shotgun sequence	6586..7389	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOABM010000124.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314586 SAMN37863392-rid19853623.guided.055, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOABM010000126.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314586 SAMN37863392-rid19853623.guided.086, whole genome shotgun sequence	2500..3336	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOABM010000126.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314586 SAMN37863392-rid19853623.guided.086, whole genome shotgun sequence	1697..2500	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOABM010000089.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314586 SAMN37863392-rid19853623.denovo.093, whole genome shotgun sequence	2309..3514	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOABM010000127.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314586 SAMN37863392-rid19853623.guided.094, whole genome shotgun sequence	2337..3542	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOABM010000090.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314586 SAMN37863392-rid19853623.denovo.095, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABOABM010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314586 SAMN37863392-rid19853623.denovo.076, whole genome shotgun sequence	4866..5127		enterobacteriales	IncFII	96.95	262 / 261	ABOABM010000126.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314586 SAMN37863392-rid19853623.guided.086, whole genome shotgun sequence	3959..4220		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOABM010000097.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314586 SAMN37863392-rid19853623.denovo.102, whole genome shotgun sequence	247..388		enterobacteriales	IncX1	100	373 / 373	ABOABM010000069.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314586 SAMN37863392-rid19853623.denovo.072, whole genome shotgun sequence	2153..2525																											avrA	ABOABM010000039.1	39484..40353	99.655	870	0						
GCA_032805525.1_PDT001942566.1_genomic.fna	Salmonella_enterica	0.5217	81.73 KB	20	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:g,m,s:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	g,m,s	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOABL010000001.1 Salmonella enterica subsp. enterica serovar Lubbock strain FSIS22314585 SAMN37863391-rid19853633.denovo.001, whole genome shotgun sequence	148904..149341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOABL010000102.1 Salmonella enterica subsp. enterica serovar Lubbock strain FSIS22314585 SAMN37863391-rid19853633.guided.066, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOABL010000008.1	105000..105869	99.195	870	0						
GCA_032805685.1_PDT001942550.1_genomic.fna	Salmonella_enterica	0.5224	370.567 KB	6	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOABS010000003.1 Salmonella enterica strain PNUSAS392799 SAMN37862760-rid19853543.denovo.03, whole genome shotgun sequence	256319..256756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOABS010000033.1 Salmonella enterica strain PNUSAS392799 SAMN37862760-rid19853543.guided.23, whole genome shotgun sequence	5916..6353	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOABS010000006.1	275704..276573	99.31	870	0						
GCA_032805725.1_PDT001942549.1_genomic.fna	Salmonella_enterica	0.5216	2.382 MB	1	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOABT010000001.1 Salmonella enterica strain PNUSAS392800 SAMN37862757-rid19853533.denovo.01, whole genome shotgun sequence	1339522..1339959	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOABT010000016.1 Salmonella enterica strain PNUSAS392800 SAMN37862757-rid19853533.guided.10, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOABT010000002.1	149711..150580	99.425	870	0						
GCA_032805745.1_PDT001942548.1_genomic.fna	Salmonella_enterica	0.5213	674.004 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOABU010000001.1 Salmonella enterica strain PNUSAS392797 SAMN37862751-rid19853063.denovo.01, whole genome shotgun sequence	657957..658394	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOABU010000022.1 Salmonella enterica strain PNUSAS392797 SAMN37862751-rid19853063.guided.16, whole genome shotgun sequence	4514..4951	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOABU010000002.1	544768..545636	99.425	870	0						
GCA_032805755.1_PDT001942546.1_genomic.fna	Salmonella_enterica	0.5204	673.606 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOABW010000001.1 Salmonella enterica strain PNUSAS392804 SAMN37862758-rid19853513.denovo.01, whole genome shotgun sequence	671545..671982	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOABW010000022.1 Salmonella enterica strain PNUSAS392804 SAMN37862758-rid19853513.guided.15, whole genome shotgun sequence	25521..25958	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOABW010000010.1 Salmonella enterica strain PNUSAS392804 SAMN37862758-rid19853513.denovo.10, whole genome shotgun sequence	66977..67118																																																						avrA	ABOABW010000003.1	512155..513024	99.425	870	0						
GCA_032805785.1_PDT001942547.1_genomic.fna	Salmonella_enterica	0.5228	443.832 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOABX010000001.1 Salmonella enterica strain PNUSAS392802 SAMN37862754-rid19853523.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOABX010000027.1 Salmonella enterica strain PNUSAS392802 SAMN37862754-rid19853523.guided.18, whole genome shotgun sequence	5256..5693	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOABX010000007.1	129893..130762	98.966	870	0						
GCA_032805805.1_PDT001942544.1_genomic.fna	Salmonella_enterica	0.5205	646.834 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	-	Salmonella enterica subspecies enterica (subspecies I)	I 9:l,z28:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOABY010000001.1 Salmonella enterica strain PNUSAS392798 SAMN37862759-rid19853493.denovo.01, whole genome shotgun sequence	397866..398303	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOABY010000019.1 Salmonella enterica strain PNUSAS392798 SAMN37862759-rid19853493.guided.16, whole genome shotgun sequence	13056..13493	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOABY010000003.1	499128..499996	99.425	870	0						
GCA_032805825.1_PDT001942545.1_genomic.fna	Salmonella_enterica	0.5206	660.466 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOABV010000001.1 Salmonella enterica strain PNUSAS392805 SAMN37862753-rid19853503.denovo.01, whole genome shotgun sequence	398384..398821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOABV010000025.1 Salmonella enterica strain PNUSAS392805 SAMN37862753-rid19853503.guided.11, whole genome shotgun sequence	39323..39760	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOABV010000010.1 Salmonella enterica strain PNUSAS392805 SAMN37862753-rid19853503.denovo.10, whole genome shotgun sequence	82242..82383																																																						avrA	ABOABV010000003.1	496410..497278	99.425	870	0						
GCA_032805845.1_PDT001942541.1_genomic.fna	Salmonella_enterica	0.5214	372.913 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOACB010000001.1 Salmonella enterica strain PNUSAS392796 SAMN37862756-rid19853043.denovo.01, whole genome shotgun sequence	498122..498559	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOACB010000032.1 Salmonella enterica strain PNUSAS392796 SAMN37862756-rid19853043.guided.20, whole genome shotgun sequence	16342..16779	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOACB010000008.1	140438..141307	99.425	870	0						
GCA_032805855.1_PDT001942543.1_genomic.fna	Salmonella_enterica	0.5223	443.873 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOABZ010000001.1 Salmonella enterica strain PNUSAS392801 SAMN37862755-rid19853053.denovo.01, whole genome shotgun sequence	790286..790723	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOABZ010000026.1 Salmonella enterica strain PNUSAS392801 SAMN37862755-rid19853053.guided.17, whole genome shotgun sequence	10121..10558	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOABZ010000005.1	183093..183962	98.966	870	0						
GCA_032805885.1_PDT001942542.1_genomic.fna	Salmonella_enterica	0.5209	576.636 KB	4	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,tet(A),tet(A)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOACA010000001.1 Salmonella enterica strain PNUSAS392795 SAMN37862761-rid19853483.denovo.01, whole genome shotgun sequence	151992..152429	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOACA010000026.1 Salmonella enterica strain PNUSAS392795 SAMN37862761-rid19853483.guided.19, whole genome shotgun sequence	7917..8354	Amikacin, Tobramycin	NC_003197	fosA7	96.22	423/423	ABOACA010000002.1 Salmonella enterica strain PNUSAS392795 SAMN37862761-rid19853483.denovo.02, whole genome shotgun sequence	394430..394852	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	ABOACA010000030.1 Salmonella enterica strain PNUSAS392795 SAMN37862761-rid19853483.guided.23, whole genome shotgun sequence	2418..2840	Fosfomycin	LAPJ01000014	tet(A)	99.92	1200/1200	ABOACA010000016.1 Salmonella enterica strain PNUSAS392795 SAMN37862761-rid19853483.denovo.17, whole genome shotgun sequence	2516..3715	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOACA010000029.1 Salmonella enterica strain PNUSAS392795 SAMN37862761-rid19853483.guided.22, whole genome shotgun sequence	1333..2532	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOACA010000016.1 Salmonella enterica strain PNUSAS392795 SAMN37862761-rid19853483.denovo.17, whole genome shotgun sequence	10555..10696																																																						avrA	ABOACA010000006.1	169096..169965	99.195	870	0						
GCA_032805905.1_PDT001942540.1_genomic.fna	Salmonella_enterica	0.5208	392.301 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	2	aac(6')-Iaa,aac(6')-If,aac(6')-Iaa,aac(6')-If	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOACC010000001.1 Salmonella enterica strain PNUSAS392803 SAMN37862752-rid19853473.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-If	90.63	427/435	ABOACC010000013.1 Salmonella enterica strain PNUSAS392803 SAMN37862752-rid19853473.denovo.13, whole genome shotgun sequence	83002..83428	Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin	X55353	aac(6')-Iaa	97.95	438/438	ABOACC010000033.1 Salmonella enterica strain PNUSAS392803 SAMN37862752-rid19853473.guided.21, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aac(6')-If	90.63	427/435	ABOACC010000036.1 Salmonella enterica strain PNUSAS392803 SAMN37862752-rid19853473.guided.27, whole genome shotgun sequence	2533..2959	Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin	X55353																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOACC010000003.1	371909..372778	99.31	870	0						
GCA_032805925.1_PDT001942539.1_genomic.fna	Salmonella_enterica	0.5214	251.118 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOACD010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325581 SAMN37862634-rid19853463.denovo.04, whole genome shotgun sequence	20249..20686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOACD010000055.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325581 SAMN37862634-rid19853463.guided.30, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOACD010000033.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325581 SAMN37862634-rid19853463.denovo.36, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOACD010000036.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325581 SAMN37862634-rid19853463.denovo.39, whole genome shotgun sequence	3412..3673																																																avrA	ABOACD010000007.1	174842..175711	99.54	870	0						
GCA_032805945.1_PDT001942538.1_genomic.fna	Salmonella_enterica	0.5217	138.278 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOACE010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOACE010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.denovo.41, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOACE010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.denovo.41, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOACE010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.denovo.74, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOACE010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.denovo.74, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOACE010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.guided.30, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOACE010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.guided.55, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOACE010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.guided.55, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOACE010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.guided.73, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOACE010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.guided.73, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOACE010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.denovo.75, whole genome shotgun sequence	930..1805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOACE010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.guided.79, whole genome shotgun sequence	608..1483	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOACE010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.denovo.69, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOACE010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.guided.68, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOACE010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.denovo.41, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOACE010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.guided.55, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOACE010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.denovo.41, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOACE010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.guided.57, whole genome shotgun sequence	1231..2430	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOACE010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325583 SAMN37862628-rid19853033.denovo.45, whole genome shotgun sequence	9109..9668																																																						avrA	ABOACE010000005.1	124361..125230	99.655	870	0						
GCA_032805955.1_PDT001942535.1_genomic.fna	Salmonella_enterica	0.5215	85.721 KB	20	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOACG010000011.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.denovo.011, whole genome shotgun sequence	32066..32503	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOACG010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.denovo.046, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOACG010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.denovo.046, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOACG010000113.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.guided.069, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOACG010000115.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.guided.083, whole genome shotgun sequence	3231..4067	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOACG010000115.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.guided.083, whole genome shotgun sequence	2428..3231	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOACG010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.denovo.046, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOACG010000117.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.guided.095, whole genome shotgun sequence	1069..2214	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.11	1214/1215	ABOACG010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.denovo.046, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABOACG010000116.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.guided.089, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOACG010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.denovo.046, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOACG010000115.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.guided.083, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOACG010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.denovo.046, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOACG010000115.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.guided.083, whole genome shotgun sequence	5328..6602	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOACG010000048.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.denovo.048, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOACG010000028.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.denovo.028, whole genome shotgun sequence	16913..17172		enterobacteriales	IncX1	98.66	374 / 374	ABOACG010000028.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325588 SAMN37862633-rid19853433.denovo.028, whole genome shotgun sequence	52767..53140																																									avrA	ABOACG010000039.1	43401..44269	99.54	870	0						
GCA_032805985.1_PDT001942537.1_genomic.fna	Salmonella_enterica	0.5206	87.127 KB	20	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	-:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOACF010000004.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12325584 SAMN37862629-rid19853453.denovo.004, whole genome shotgun sequence	15474..15911	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOACF010000078.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12325584 SAMN37862629-rid19853453.denovo.080, whole genome shotgun sequence	10287..11123	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOACF010000078.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12325584 SAMN37862629-rid19853453.denovo.080, whole genome shotgun sequence	11123..11926	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOACF010000125.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12325584 SAMN37862629-rid19853453.guided.071, whole genome shotgun sequence	4129..4566	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOACF010000127.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12325584 SAMN37862629-rid19853453.guided.096, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOACF010000127.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12325584 SAMN37862629-rid19853453.guided.096, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	ABOACF010000003.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12325584 SAMN37862629-rid19853453.denovo.003, whole genome shotgun sequence	121797..122219	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	ABOACF010000126.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12325584 SAMN37862629-rid19853453.guided.089, whole genome shotgun sequence	6436..6858	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	ABOACF010000100.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12325584 SAMN37862629-rid19853453.denovo.107, whole genome shotgun sequence	762..1967	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOACF010000130.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12325584 SAMN37862629-rid19853453.guided.106, whole genome shotgun sequence	2422..3627	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOACF010000097.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12325584 SAMN37862629-rid19853453.denovo.103, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOACF010000078.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12325584 SAMN37862629-rid19853453.denovo.080, whole genome shotgun sequence	9403..9664		enterobacteriales	IncFII	96.95	262 / 261	ABOACF010000127.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12325584 SAMN37862629-rid19853453.guided.096, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOACF010000080.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS12325584 SAMN37862629-rid19853453.denovo.082, whole genome shotgun sequence	2153..2525																																		avrA	ABOACF010000018.1	81221..82090	99.08	870	0						
GCA_032806005.1_PDT001942531.1_genomic.fna	Salmonella_enterica	0.522	88.46 KB	20	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	3	IncFIB(AP001918),IncFIB(pN55391),IncFII(pHN7A8)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOACI010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325522 SAMN37862625-rid19853013.denovo.001, whole genome shotgun sequence	232805..233242	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOACI010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325522 SAMN37862625-rid19853013.denovo.102, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOACI010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325522 SAMN37862625-rid19853013.denovo.102, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOACI010000139.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325522 SAMN37862625-rid19853013.guided.076, whole genome shotgun sequence	5080..5517	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOACI010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325522 SAMN37862625-rid19853013.guided.101, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOACI010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325522 SAMN37862625-rid19853013.guided.101, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOACI010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325522 SAMN37862625-rid19853013.denovo.097, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOACI010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325522 SAMN37862625-rid19853013.guided.096, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	dfrA14	100	474/474	ABOACI010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325522 SAMN37862625-rid19853013.denovo.140, whole genome shotgun sequence	86..559	Trimethoprim	AF393510	dfrA14	100	474/474	ABOACI010000142.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325522 SAMN37862625-rid19853013.guided.136, whole genome shotgun sequence	101..574	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(AP001918)	96.63	682 / 682	ABOACI010000012.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325522 SAMN37862625-rid19853013.denovo.012, whole genome shotgun sequence	27379..28060	enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOACI010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325522 SAMN37862625-rid19853013.denovo.094, whole genome shotgun sequence	2116..2675		enterobacteriales	IncFII(pHN7A8)	98.08	260 / 260	ABOACI010000012.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325522 SAMN37862625-rid19853013.denovo.012, whole genome shotgun sequence	33795..34054																																									avrA	ABOACI010000008.1	93814..94683	99.655	870	0						
GCA_032806025.1_PDT001942529.1_genomic.fna	Salmonella_enterica	0.5196	73.041 KB	23	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOACK010000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325520 SAMN37862624-rid19853393.denovo.008, whole genome shotgun sequence	85011..85448	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOACK010000146.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325520 SAMN37862624-rid19853393.guided.062, whole genome shotgun sequence	15284..15721	Amikacin, Tobramycin	NC_003197	blaCMY-2	99.91	1146/1146	ABOACK010000078.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325520 SAMN37862624-rid19853393.denovo.082, whole genome shotgun sequence	12210..13355	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	99.91	1146/1146	ABOACK010000149.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325520 SAMN37862624-rid19853393.guided.081, whole genome shotgun sequence	1424..2569	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	100	373 / 373	ABOACK010000086.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325520 SAMN37862624-rid19853393.denovo.090, whole genome shotgun sequence	2153..2525																																																						avrA	ABOACK010000041.1	39614..40483	99.655	870	0						
GCA_032806045.1_PDT001942528.1_genomic.fna	Salmonella_enterica	0.5221	367.997 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOACL010000001.1 Salmonella enterica strain PNUSAS392792 SAMN37862623-rid19853003.denovo.01, whole genome shotgun sequence	572151..572588	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOACL010000030.1 Salmonella enterica strain PNUSAS392792 SAMN37862623-rid19853003.guided.18, whole genome shotgun sequence	27791..28228	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOACL010000002.1	149828..150697	99.655	870	0						
GCA_032806065.1_PDT001942527.1_genomic.fna	Salmonella_enterica	0.5219	443.924 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOACM010000001.1 Salmonella enterica strain PNUSAS392786 SAMN37862622-rid19853383.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOACM010000027.1 Salmonella enterica strain PNUSAS392786 SAMN37862622-rid19853383.guided.11, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOACM010000002.1	94005..94874	98.966	870	0						
GCA_032806085.1_PDT001942532.1_genomic.fna	Salmonella_enterica	0.521	108.067 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOACH010000002.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325582 SAMN37862627-rid19853413.denovo.02, whole genome shotgun sequence	100709..101146	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOACH010000083.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325582 SAMN37862627-rid19853413.guided.58, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOACH010000058.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325582 SAMN37862627-rid19853413.denovo.61, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOACH010000063.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325582 SAMN37862627-rid19853413.denovo.66, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.93	374 / 374	ABOACH010000042.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325582 SAMN37862627-rid19853413.denovo.42, whole genome shotgun sequence	203..576																																									avrA	ABOACH010000003.1	175109..175978	99.54	870	0						
GCA_032806105.1_PDT001942530.1_genomic.fna	Salmonella_enterica	0.5195	158.961 KB	10	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	2	Col(pHAD28),IncFII(p96A)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOACJ010000004.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325580 SAMN37862626-rid19853403.denovo.04, whole genome shotgun sequence	229964..230401	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOACJ010000047.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325580 SAMN37862626-rid19853403.denovo.50, whole genome shotgun sequence	5947..6783	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABOACJ010000047.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325580 SAMN37862626-rid19853403.denovo.50, whole genome shotgun sequence	4916..5729	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aph(3'')-Ib	100	804/804	ABOACJ010000047.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325580 SAMN37862626-rid19853403.denovo.50, whole genome shotgun sequence	6783..7586	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABOACJ010000079.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325580 SAMN37862626-rid19853403.guided.25, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOACJ010000083.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325580 SAMN37862626-rid19853403.guided.55, whole genome shotgun sequence	4573..5409	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABOACJ010000083.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325580 SAMN37862626-rid19853403.guided.55, whole genome shotgun sequence	5627..6440	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aph(3'')-Ib	100	804/804	ABOACJ010000083.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325580 SAMN37862626-rid19853403.guided.55, whole genome shotgun sequence	3770..4573	Streptomycin	AF321551	sul2	99.88	816/816	ABOACJ010000003.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325580 SAMN37862626-rid19853403.denovo.03, whole genome shotgun sequence	346212..347027	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABOACJ010000082.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325580 SAMN37862626-rid19853403.guided.51, whole genome shotgun sequence	12297..13112	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOACJ010000059.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325580 SAMN37862626-rid19853403.denovo.65, whole genome shotgun sequence	635..1840	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOACJ010000084.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325580 SAMN37862626-rid19853403.guided.64, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOACJ010000062.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325580 SAMN37862626-rid19853403.denovo.68, whole genome shotgun sequence	2209..2339	enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOACJ010000039.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325580 SAMN37862626-rid19853403.denovo.41, whole genome shotgun sequence	13734..14267																																																avrA	ABOACJ010000017.1	95196..96064	99.655	869	0						
GCA_032806125.1_PDT001942526.1_genomic.fna	Salmonella_enterica	0.5216	364.378 KB	5	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOACN010000001.1 Salmonella enterica strain PNUSAS392787 SAMN37862621-rid19852993.denovo.01, whole genome shotgun sequence	307821..308258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOACN010000032.1 Salmonella enterica strain PNUSAS392787 SAMN37862621-rid19852993.guided.24, whole genome shotgun sequence	13096..13533	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOACN010000015.1 Salmonella enterica strain PNUSAS392787 SAMN37862621-rid19852993.denovo.15, whole genome shotgun sequence	67256..68461	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOACN010000031.1 Salmonella enterica strain PNUSAS392787 SAMN37862621-rid19852993.guided.22, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOACN010000015.1 Salmonella enterica strain PNUSAS392787 SAMN37862621-rid19852993.denovo.15, whole genome shotgun sequence	74847..74988	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOACN010000031.1 Salmonella enterica strain PNUSAS392787 SAMN37862621-rid19852993.guided.22, whole genome shotgun sequence	3169..3310																																																											
GCA_032806165.1_PDT001942524.1_genomic.fna	Salmonella_enterica	0.5187	368.134 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOACP010000001.1 Salmonella enterica strain PNUSAS392789 SAMN37862618-rid19853363.denovo.01, whole genome shotgun sequence	485977..486414	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOACP010000037.1 Salmonella enterica strain PNUSAS392789 SAMN37862618-rid19853363.guided.25, whole genome shotgun sequence	5072..5509	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOACP010000005.1 Salmonella enterica strain PNUSAS392789 SAMN37862618-rid19853363.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOACP010000040.1 Salmonella enterica strain PNUSAS392789 SAMN37862618-rid19853363.guided.28, whole genome shotgun sequence	2371..2793	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOACP010000002.1	174033..174902	99.195	870	0						
GCA_032806185.1_PDT001942522.1_genomic.fna	Salmonella_enterica	0.5141	377.603 KB	4	aroC_225,dnaN_25,hemD_29,hisD_487,purE_48,sucA_209,thrA_27	3554	56:z4,z23:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_225	dnaN	100	100	dnaN_25	hemD	100	100	hemD_29	hisD	100	100	hisD_487	purE	100	100	purE_48	sucA	100	100	sucA_209	thrA	100	100	thrA_27	56	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 56:z4,z23:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032806205.1_PDT001942525.1_genomic.fna	Salmonella_enterica	0.521	648.166 KB	2	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOACO010000001.1 Salmonella enterica strain PNUSAS392791 SAMN37862619-rid19853373.denovo.01, whole genome shotgun sequence	1420320..1420757	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOACO010000016.1 Salmonella enterica strain PNUSAS392791 SAMN37862619-rid19853373.guided.12, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOACO010000002.1	149704..150573	99.54	870	0						
GCA_032806225.1_PDT001942521.1_genomic.fna	Salmonella_enterica	0.521	528.38 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOACR010000001.1 Salmonella enterica strain PNUSAS392794 SAMN37862604-rid19852973.denovo.01, whole genome shotgun sequence	671406..671843	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOACR010000018.1 Salmonella enterica strain PNUSAS392794 SAMN37862604-rid19852973.guided.14, whole genome shotgun sequence	12230..12667	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOACR010000002.1	559476..560344	99.31	870	0						
GCA_032806265.1_PDT001942520.1_genomic.fna	Salmonella_enterica	0.5231	333.002 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOACS010000001.1 Salmonella enterica strain PNUSAS392785 SAMN37862605-rid19853343.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOACS010000034.1 Salmonella enterica strain PNUSAS392785 SAMN37862605-rid19853343.guided.24, whole genome shotgun sequence	1756..2193	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOACS010000006.1	94091..94960	99.655	870	0						
GCA_032806285.1_PDT001942518.1_genomic.fna	Salmonella_enterica	0.5144	279.55 KB	6	aroC_33,dnaN_26,hemD_30,hisD_144,purE_464,sucA_87,thrA_134	1848	61:z52:z53	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_144	purE	100	100	purE_464	sucA	100	100	sucA_87	thrA	100	100	thrA_134	61	z52	z53	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:z52:z53		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOACV010000002.1 Salmonella enterica strain PNUSAS392793 SAMN37862607-rid19852963.denovo.02, whole genome shotgun sequence	77008..77445	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOACV010000041.1 Salmonella enterica strain PNUSAS392793 SAMN37862607-rid19852963.guided.27, whole genome shotgun sequence	9318..9755	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOACV010000032.1 Salmonella enterica strain PNUSAS392793 SAMN37862607-rid19852963.denovo.35, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOACV010000043.1 Salmonella enterica strain PNUSAS392793 SAMN37862607-rid19852963.guided.34, whole genome shotgun sequence	4227..4871	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOACV010000032.1 Salmonella enterica strain PNUSAS392793 SAMN37862607-rid19852963.denovo.35, whole genome shotgun sequence	1519..1649	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOACV010000043.1 Salmonella enterica strain PNUSAS392793 SAMN37862607-rid19852963.guided.34, whole genome shotgun sequence	3571..3701																																																avrA	ABOACV010000001.1	194582..195451	96.437	870	0						
GCA_032806305.1_PDT001942519.1_genomic.fna	Salmonella_enterica	0.5209	430.286 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOACT010000001.1 Salmonella enterica strain PNUSAS392788 SAMN37862606-rid19853333.denovo.01, whole genome shotgun sequence	477438..477875	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOACT010000028.1 Salmonella enterica strain PNUSAS392788 SAMN37862606-rid19853333.guided.12, whole genome shotgun sequence	39694..40131	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOACT010000011.1	93876..94744	99.195	870	0						
GCA_032806405.1_PDT001942511.1_genomic.fna	Salmonella_enterica	0.5209	478.497 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOADA010000001.1 Salmonella enterica strain PNUSAS392776 SAMN37859377-rid19852933.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOADA010000025.1 Salmonella enterica strain PNUSAS392776 SAMN37859377-rid19852933.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOADA010000015.1 Salmonella enterica strain PNUSAS392776 SAMN37859377-rid19852933.denovo.17, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOADA010000015.1 Salmonella enterica strain PNUSAS392776 SAMN37859377-rid19852933.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABOADA010000002.1	553432..554301	99.54	870	0						
GCA_032806425.1_PDT001942510.1_genomic.fna	Salmonella_enterica	0.5214	397.364 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_34,sucA_13,thrA_23	305	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pXuzhou21	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_23	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOADB010000004.1 Salmonella enterica strain PNUSAS392779 SAMN37859382-rid19853283.denovo.04, whole genome shotgun sequence	229069..229506	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOADB010000029.1 Salmonella enterica strain PNUSAS392779 SAMN37859382-rid19853283.guided.19, whole genome shotgun sequence	13711..14148	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pXuzhou21	99.86	720 / 720	ABOADB010000017.1 Salmonella enterica strain PNUSAS392779 SAMN37859382-rid19853283.denovo.17, whole genome shotgun sequence	23692..24411																																																																	
GCA_032806445.1_PDT001942509.1_genomic.fna	Salmonella_enterica	0.5229	525.964 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOADC010000001.1 Salmonella enterica strain PNUSAS392781 SAMN37859380-rid19853273.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOADC010000029.1 Salmonella enterica strain PNUSAS392781 SAMN37859380-rid19853273.guided.22, whole genome shotgun sequence	9243..9680	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOADC010000003.1	149551..150420	99.655	870	0						
GCA_032806465.1_PDT001942508.1_genomic.fna	Salmonella_enterica	0.5213	489.522 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOADE010000001.1 Salmonella enterica strain PNUSAS392783 SAMN37859378-rid19852923.denovo.01, whole genome shotgun sequence	293249..293686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOADE010000025.1 Salmonella enterica strain PNUSAS392783 SAMN37859378-rid19852923.guided.19, whole genome shotgun sequence	16417..16854	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOADE010000015.1 Salmonella enterica strain PNUSAS392783 SAMN37859378-rid19852923.denovo.15, whole genome shotgun sequence	48112..48754	enterobacteriales	IncFII(S)	100	262 / 262	ABOADE010000015.1 Salmonella enterica strain PNUSAS392783 SAMN37859378-rid19852923.denovo.15, whole genome shotgun sequence	3859..4120																																																avrA	ABOADE010000002.1	553497..554366	99.54	870	0						
GCA_032806485.1_PDT001942507.1_genomic.fna	Salmonella_enterica	0.5204	319.63 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOADD010000001.1 Salmonella enterica strain PNUSAS392777 SAMN37859376-rid19853263.denovo.01, whole genome shotgun sequence	561959..562396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOADD010000031.1 Salmonella enterica strain PNUSAS392777 SAMN37859376-rid19853263.guided.18, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOADD010000011.1	140075..140943	99.195	870	0						
GCA_032806505.1_PDT001942506.1_genomic.fna	Salmonella_enterica	0.5219	415.946 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(MG828)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOADG010000001.1 Salmonella enterica strain PNUSAS392782 SAMN37859383-rid19852913.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOADG010000028.1 Salmonella enterica strain PNUSAS392782 SAMN37859383-rid19852913.guided.13, whole genome shotgun sequence	8077..8514	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(MG828)	94.27	262 / 262	ABOADG010000023.1 Salmonella enterica strain PNUSAS392782 SAMN37859383-rid19852913.denovo.26, whole genome shotgun sequence	4..265																																																						avrA	ABOADG010000002.1	183617..184486	98.966	870	0						
GCA_032806525.1_PDT001942504.1_genomic.fna	Salmonella_enterica	0.5205	194.765 KB	9	aroC_230,dnaN_38,hemD_452,hisD_408,purE_236,sucA_216,thrA_345	2757	40:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCRY)	aroC	100	100	aroC_230	dnaN	100	100	dnaN_38	hemD	100	100	hemD_452	hisD	100	100	hisD_408	purE	100	100	purE_236	sucA	100	100	sucA_216	thrA	100	100	thrA_345	40	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Riogrande		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOADH010000009.1 Salmonella enterica strain PNUSAS392778 SAMN37859379-rid19853243.denovo.09, whole genome shotgun sequence	69287..69724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOADH010000062.1 Salmonella enterica strain PNUSAS392778 SAMN37859379-rid19853243.guided.44, whole genome shotgun sequence	10612..11049	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABOADH010000034.1 Salmonella enterica strain PNUSAS392778 SAMN37859379-rid19853243.denovo.35, whole genome shotgun sequence	8801..9393																																																																	
GCA_032806545.1_PDT001942505.1_genomic.fna	Salmonella_enterica	0.5222	203.759 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOADF010000001.1 Salmonella enterica strain PNUSAS392780 SAMN37859381-rid19853253.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOADF010000036.1 Salmonella enterica strain PNUSAS392780 SAMN37859381-rid19853253.guided.25, whole genome shotgun sequence	19551..19988	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOADF010000003.1	39538..40407	99.655	870	0						
GCA_032806565.1_PDT001942503.1_genomic.fna	Salmonella_enterica	0.5226	393.51 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOADI010000004.1 Salmonella enterica strain PNUSAS392766 SAMN37859303-rid19852903.denovo.04, whole genome shotgun sequence	169801..170238	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOADI010000042.1 Salmonella enterica strain PNUSAS392766 SAMN37859303-rid19852903.guided.21, whole genome shotgun sequence	7556..7993	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032806585.1_PDT001942502.1_genomic.fna	Salmonella_enterica	0.5201	321.347 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOADJ010000001.1 Salmonella enterica strain PNUSAS392768 SAMN37859297-rid19853233.denovo.01, whole genome shotgun sequence	172484..172921	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOADJ010000031.1 Salmonella enterica strain PNUSAS392768 SAMN37859297-rid19853233.guided.15, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOADJ010000009.1	95554..96422	99.425	870	0						
GCA_032806605.1_PDT001942501.1_genomic.fna	Salmonella_enterica	0.522	244.687 KB	7	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOADK010000002.1 Salmonella enterica strain PNUSAS392773 SAMN37859300-rid19852893.denovo.02, whole genome shotgun sequence	37855..38292	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOADK010000033.1 Salmonella enterica strain PNUSAS392773 SAMN37859300-rid19852893.guided.18, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOADK010000005.1	98990..99859	99.77	870	0						
GCA_032806625.1_PDT001942500.1_genomic.fna	Salmonella_enterica	0.5218	281.189 KB	7	aroC_127,dnaN_81,hemD_111,hisD_564,purE_39,sucA_226,thrA_41	2225	13:b:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_127	dnaN	100	100	dnaN_81	hemD	100	100	hemD_111	hisD	100	100	hisD_564	purE	100	100	purE_39	sucA	100	100	sucA_226	thrA	100	100	thrA_41	13	b	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Durham		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOADL010000010.1 Salmonella enterica strain PNUSAS392765 SAMN37859304-rid19853223.denovo.10, whole genome shotgun sequence	169656..170093	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOADL010000040.1 Salmonella enterica strain PNUSAS392765 SAMN37859304-rid19853223.guided.22, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOADL010000001.1	140409..141278	98.966	870	0						
GCA_032806645.1_PDT001942499.1_genomic.fna	Salmonella_enterica	0.5208	356.587 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOADM010000001.1 Salmonella enterica strain PNUSAS392770 SAMN37859301-rid19853213.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOADM010000044.1 Salmonella enterica strain PNUSAS392770 SAMN37859301-rid19853213.guided.13, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOADM010000010.1	93870..94740	99.196	871	0						
GCA_032806665.1_PDT001942498.1_genomic.fna	Salmonella_enterica	0.5213	452.332 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOADO010000002.1 Salmonella enterica strain PNUSAS392774 SAMN37859302-rid19852883.denovo.02, whole genome shotgun sequence	136652..137089	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOADO010000027.1 Salmonella enterica strain PNUSAS392774 SAMN37859302-rid19852883.guided.14, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABOADO010000012.1 Salmonella enterica strain PNUSAS392774 SAMN37859302-rid19852883.denovo.12, whole genome shotgun sequence	51927..52188																																																						avrA	ABOADO010000003.1	496255..497123	99.425	870	0						
GCA_032806685.1_PDT001942512.1_genomic.fna	Salmonella_enterica	0.5192	225.556 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOADP010000005.1 Salmonella enterica strain PNUSAS392775 SAMN37859384-rid19853293.denovo.05, whole genome shotgun sequence	208521..208958	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOADP010000084.1 Salmonella enterica strain PNUSAS392775 SAMN37859384-rid19853293.guided.44, whole genome shotgun sequence	1362..1799	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOADP010000021.1 Salmonella enterica strain PNUSAS392775 SAMN37859384-rid19853293.denovo.21, whole genome shotgun sequence	40588..41230	enterobacteriales	IncFII(S)	100	262 / 262	ABOADP010000021.1 Salmonella enterica strain PNUSAS392775 SAMN37859384-rid19853293.denovo.21, whole genome shotgun sequence	56315..56576		enterobacteriales	IncFII(p96A)	99.06	534 / 534	ABOADP010000026.1 Salmonella enterica strain PNUSAS392775 SAMN37859384-rid19853293.denovo.26, whole genome shotgun sequence	16931..17464																																									avrA	ABOADP010000004.1	143078..143947	99.885	870	0						
GCA_032806705.1_PDT001942523.1_genomic.fna	Salmonella_enterica	0.5229	297.107 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOADN010000001.1 Salmonella enterica strain PNUSAS392784 SAMN37862620-rid19852983.denovo.01, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOADN010000034.1 Salmonella enterica strain PNUSAS392784 SAMN37862620-rid19852983.guided.19, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032806725.1_PDT001942497.1_genomic.fna	Salmonella_enterica	0.5219	314.974 KB	6	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOADQ010000001.1 Salmonella enterica strain PNUSAS392767 SAMN37859295-rid19853203.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOADQ010000048.1 Salmonella enterica strain PNUSAS392767 SAMN37859295-rid19853203.guided.28, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032806745.1_PDT001942496.1_genomic.fna	Salmonella_enterica	0.522	496.516 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(MG828)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOADS010000002.1 Salmonella enterica strain PNUSAS392772 SAMN37859299-rid19852873.denovo.02, whole genome shotgun sequence	222293..222730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOADS010000027.1 Salmonella enterica strain PNUSAS392772 SAMN37859299-rid19852873.guided.15, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(MG828)	94.27	262 / 262	ABOADS010000020.1 Salmonella enterica strain PNUSAS392772 SAMN37859299-rid19852873.denovo.23, whole genome shotgun sequence	428..689																																																						avrA	ABOADS010000001.1	183105..183973	98.851	870	0						
GCA_032806765.1_PDT001942495.1_genomic.fna	Salmonella_enterica	0.5214	298.638 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_547	2370	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_547	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOADR010000010.1 Salmonella enterica strain PNUSAS392769 SAMN37859296-rid19853193.denovo.10, whole genome shotgun sequence	59250..59687	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOADR010000040.1 Salmonella enterica strain PNUSAS392769 SAMN37859296-rid19853193.guided.20, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOADR010000009.1	181795..182664	99.195	870	0						
GCA_032806785.1_PDT001942494.1_genomic.fna	Salmonella_enterica	0.5207	268.119 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOADT010000015.1 Salmonella enterica strain PNUSAS392771 SAMN37859298-rid19853183.denovo.16, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOADT010000055.1 Salmonella enterica strain PNUSAS392771 SAMN37859298-rid19853183.guided.15, whole genome shotgun sequence	33194..33631	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	ABOADT010000040.1 Salmonella enterica strain PNUSAS392771 SAMN37859298-rid19853183.denovo.43, whole genome shotgun sequence	4077..4230	enterobacteriales	IncFIB(S)	100	643 / 643	ABOADT010000016.1 Salmonella enterica strain PNUSAS392771 SAMN37859298-rid19853183.denovo.17, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	ABOADT010000016.1 Salmonella enterica strain PNUSAS392771 SAMN37859298-rid19853183.denovo.17, whole genome shotgun sequence	30407..30668		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOADT010000019.1 Salmonella enterica strain PNUSAS392771 SAMN37859298-rid19853183.denovo.20, whole genome shotgun sequence	70508..70649																																		avrA	ABOADT010000001.1	401197..402065	100	869	0						
GCA_032806805.1_PDT001942493.1_genomic.fna	Salmonella_enterica	0.5195	257.392 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOADU010000001.1 Salmonella enterica strain PNUSAS392695 SAMN37859289-rid19852863.denovo.01, whole genome shotgun sequence	486124..486561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOADU010000037.1 Salmonella enterica strain PNUSAS392695 SAMN37859289-rid19852863.guided.21, whole genome shotgun sequence	15250..15687	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOADU010000003.1 Salmonella enterica strain PNUSAS392695 SAMN37859289-rid19852863.denovo.03, whole genome shotgun sequence	388761..389183	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOADU010000039.1 Salmonella enterica strain PNUSAS392695 SAMN37859289-rid19852863.guided.29, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOADU010000002.1	121179..122048	99.195	870	0						
GCA_032806945.1_PDT001942488.1_genomic.fna	Salmonella_enterica	0.5203	311.428 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAEA010000002.1 Salmonella enterica strain PNUSAS392696 SAMN37859286-rid19852843.denovo.02, whole genome shotgun sequence	221084..221521	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAEA010000030.1 Salmonella enterica strain PNUSAS392696 SAMN37859286-rid19852843.guided.14, whole genome shotgun sequence	13835..14272	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAEA010000011.1	140191..141059	99.195	870	0						
GCA_032807145.1_PDT001942474.1_genomic.fna	Salmonella_enterica	0.5217	247.59 KB	7	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(MG828)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOAEN010000002.1 Salmonella enterica strain PNUSAS392699 SAMN37859284-rid19852323.denovo.02, whole genome shotgun sequence	177329..177766	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOAEN010000031.1 Salmonella enterica strain PNUSAS392699 SAMN37859284-rid19852323.guided.19, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(MG828)	94.27	262 / 262	ABOAEN010000026.1 Salmonella enterica strain PNUSAS392699 SAMN37859284-rid19852323.denovo.29, whole genome shotgun sequence	428..689																																																						avrA	ABOAEN010000009.1	148142..149011	99.77	870	0						
GCA_032807205.1_PDT001942469.1_genomic.fna	Salmonella_enterica	0.5194	161.88 KB	10	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(B),tet(B)	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAEO010000017.1 Salmonella enterica strain PNUSAS392698 SAMN37859290-rid19852283.denovo.17, whole genome shotgun sequence	62322..62759	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAEO010000056.1 Salmonella enterica strain PNUSAS392698 SAMN37859290-rid19852283.guided.31, whole genome shotgun sequence	9935..10372	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOAEO010000046.1 Salmonella enterica strain PNUSAS392698 SAMN37859290-rid19852283.denovo.51, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOAEO010000060.1 Salmonella enterica strain PNUSAS392698 SAMN37859290-rid19852283.guided.50, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	tet(B)	100	1206/1206	ABOAEO010000043.1 Salmonella enterica strain PNUSAS392698 SAMN37859290-rid19852283.denovo.47, whole genome shotgun sequence	2524..3729	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOAEO010000059.1 Salmonella enterica strain PNUSAS392698 SAMN37859290-rid19852283.guided.46, whole genome shotgun sequence	2565..3770	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOAEO010000046.1 Salmonella enterica strain PNUSAS392698 SAMN37859290-rid19852283.denovo.51, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOAEO010000060.1 Salmonella enterica strain PNUSAS392698 SAMN37859290-rid19852283.guided.50, whole genome shotgun sequence	2044..2174																																																avrA	ABOAEO010000014.1	81933..82802	98.966	870	0						
GCA_032807245.1_PDT001942468.1_genomic.fna	Salmonella_enterica	0.5211	596.958 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOAEP010000001.1 Salmonella enterica strain PNUSAS392697 SAMN37859285-rid19852773.denovo.01, whole genome shotgun sequence	397815..398252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOAEP010000031.1 Salmonella enterica strain PNUSAS392697 SAMN37859285-rid19852773.guided.13, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOAEP010000012.1 Salmonella enterica strain PNUSAS392697 SAMN37859285-rid19852773.denovo.12, whole genome shotgun sequence	34930..35463																																																						avrA	ABOAEP010000003.1	496788..497656	99.425	870	0						
GCA_032807265.1_PDT001942467.1_genomic.fna	Salmonella_enterica	0.5213	305.539 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAEQ010000001.1 Salmonella enterica strain PNUSAS392691 SAMN37859276-rid19852273.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAEQ010000029.1 Salmonella enterica strain PNUSAS392691 SAMN37859276-rid19852273.guided.19, whole genome shotgun sequence	24529..24966	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAEQ010000016.1 Salmonella enterica strain PNUSAS392691 SAMN37859276-rid19852273.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOAEQ010000016.1 Salmonella enterica strain PNUSAS392691 SAMN37859276-rid19852273.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABOAEQ010000002.1	553236..554105	99.54	870	0						
GCA_032807285.1_PDT001942466.1_genomic.fna	Salmonella_enterica	0.5215	382.958 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAER010000002.1 Salmonella enterica strain PNUSAS392705 SAMN37859280-rid19852263.denovo.02, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAER010000042.1 Salmonella enterica strain PNUSAS392705 SAMN37859280-rid19852263.guided.32, whole genome shotgun sequence	562..999	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAER010000012.1	95076..95944	99.195	870	0						
GCA_032807295.1_PDT001942464.1_genomic.fna	Salmonella_enterica	0.5209	275.207 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAEV010000001.1 Salmonella enterica strain PNUSAS392707 SAMN37859263-rid19852243.denovo.01, whole genome shotgun sequence	381665..382102	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAEV010000042.1 Salmonella enterica strain PNUSAS392707 SAMN37859263-rid19852243.guided.33, whole genome shotgun sequence	480..917	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI2(Delta)	97.83	322 / 316	ABOAEV010000020.1 Salmonella enterica strain PNUSAS392707 SAMN37859263-rid19852243.denovo.20, whole genome shotgun sequence	25672..25993																																																						avrA	ABOAEV010000003.1	209404..210272	99.77	870	0						
GCA_032807325.1_PDT001942465.1_genomic.fna	Salmonella_enterica	0.5221	275.215 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAES010000001.1 Salmonella enterica strain PNUSAS392710 SAMN37859279-rid19852253.denovo.01, whole genome shotgun sequence	381670..382107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAES010000037.1 Salmonella enterica strain PNUSAS392710 SAMN37859279-rid19852253.guided.32, whole genome shotgun sequence	310..747	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOAES010000003.1	209499..210367	99.77	870	0						
GCA_032807345.1_PDT001942463.1_genomic.fna	Salmonella_enterica	0.5208	230.264 KB	6	aroC_45,dnaN_4,hemD_8,hisD_555,purE_27,sucA_56,thrA_8	1938	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_555	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAET010000001.1 Salmonella enterica strain PNUSAS392694 SAMN37859274-rid19852763.denovo.01, whole genome shotgun sequence	375059..375496	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAET010000030.1 Salmonella enterica strain PNUSAS392694 SAMN37859274-rid19852763.guided.17, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032807365.1_PDT001942461.1_genomic.fna	Salmonella_enterica	0.5208	366.868 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAEW010000001.1 Salmonella enterica strain PNUSAS392686 SAMN37859270-rid19852753.denovo.01, whole genome shotgun sequence	560094..560531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAEW010000037.1 Salmonella enterica strain PNUSAS392686 SAMN37859270-rid19852753.guided.16, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAEW010000011.1	122091..122959	99.195	870	0						
GCA_032807385.1_PDT001942462.1_genomic.fna	Salmonella_enterica	0.5219	390.265 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAEU010000001.1 Salmonella enterica strain PNUSAS392745 SAMN37859271-rid19852233.denovo.01, whole genome shotgun sequence	454804..455241	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAEU010000036.1 Salmonella enterica strain PNUSAS392745 SAMN37859271-rid19852233.guided.25, whole genome shotgun sequence	13087..13524	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAEU010000002.1	157617..158486	98.966	870	0						
GCA_032807405.1_PDT001942459.1_genomic.fna	Salmonella_enterica	0.5229	244.158 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAEY010000001.1 Salmonella enterica strain PNUSAS392692 SAMN37859275-rid19852213.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAEY010000034.1 Salmonella enterica strain PNUSAS392692 SAMN37859275-rid19852213.guided.20, whole genome shotgun sequence	29622..30059	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAEY010000003.1	149828..150697	99.655	870	0						
GCA_032807425.1_PDT001942460.1_genomic.fna	Salmonella_enterica	0.5134	204.312 KB	9	aroC_88,dnaN_26,hemD_30,hisD_55,purE_21,sucA_68,thrA_80	432	61:k:1,5,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_55	purE	100	100	purE_21	sucA	100	100	sucA_68	thrA	100	100	thrA_80	61	k	1,5,7	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:k:1,5,(7)		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAEX010000011.1 Salmonella enterica strain PNUSAS392687 SAMN37859267-rid19852223.denovo.11, whole genome shotgun sequence	82328..82765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAEX010000046.1 Salmonella enterica strain PNUSAS392687 SAMN37859267-rid19852223.guided.33, whole genome shotgun sequence	4269..4706	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	99.73	377 / 377	ABOAEX010000028.1 Salmonella enterica strain PNUSAS392687 SAMN37859267-rid19852223.denovo.28, whole genome shotgun sequence	13301..13677																																																						avrA	ABOAEX010000003.1	133527..134396	96.552	870	0						
GCA_032807445.1_PDT001942458.1_genomic.fna	Salmonella_enterica	0.5135	267.762 KB	8	aroC_88,dnaN_26,hemD_30,hisD_55,purE_21,sucA_68,thrA_80	432	61:k:1,5,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_55	purE	100	100	purE_21	sucA	100	100	sucA_68	thrA	100	100	thrA_80	61	k	1,5,7	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:k:1,5,(7)		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAEZ010000012.1 Salmonella enterica strain PNUSAS392685 SAMN37859269-rid19852743.denovo.12, whole genome shotgun sequence	82328..82765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAEZ010000045.1 Salmonella enterica strain PNUSAS392685 SAMN37859269-rid19852743.guided.31, whole genome shotgun sequence	4880..5317	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	99.73	377 / 377	ABOAEZ010000025.1 Salmonella enterica strain PNUSAS392685 SAMN37859269-rid19852743.denovo.26, whole genome shotgun sequence	13301..13677																																																						avrA	ABOAEZ010000005.1	133527..134396	96.552	870	0						
GCA_032807465.1_PDT001942457.1_genomic.fna	Salmonella_enterica	0.5213	247.189 KB	7	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAFC010000001.1 Salmonella enterica strain PNUSAS392746 SAMN37859272-rid19852203.denovo.01, whole genome shotgun sequence	385935..386372	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAFC010000040.1 Salmonella enterica strain PNUSAS392746 SAMN37859272-rid19852203.guided.31, whole genome shotgun sequence	15862..16299	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032807485.1_PDT001942456.1_genomic.fna	Salmonella_enterica	0.5224	397.406 KB	4	aroC_42,dnaN_11,hemD_48,hisD_149,purE_12,sucA_13,thrA_4	1575	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(MG828)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAFA010000001.1 Salmonella enterica strain PNUSAS392689 SAMN37859268-rid19852733.denovo.01, whole genome shotgun sequence	464718..465155	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAFA010000039.1 Salmonella enterica strain PNUSAS392689 SAMN37859268-rid19852733.guided.20, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(MG828)	94.14	256 / 262	ABOAFA010000029.1 Salmonella enterica strain PNUSAS392689 SAMN37859268-rid19852733.denovo.32, whole genome shotgun sequence	1244..1499																																																																	
GCA_032807505.1_PDT001942455.1_genomic.fna	Salmonella_enterica	0.5203	494.944 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOAFB010000001.1 Salmonella enterica strain PNUSAS392690 SAMN37859278-rid19852193.denovo.01, whole genome shotgun sequence	458074..458511	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOAFB010000030.1 Salmonella enterica strain PNUSAS392690 SAMN37859278-rid19852193.guided.17, whole genome shotgun sequence	19314..19751	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOAFB010000013.1 Salmonella enterica strain PNUSAS392690 SAMN37859278-rid19852193.denovo.13, whole genome shotgun sequence	34958..35491																																																						avrA	ABOAFB010000003.1	394774..395642	99.425	870	0						
GCA_032807525.1_PDT001942453.1_genomic.fna	Salmonella_enterica	0.5212	271.477 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOAFE010000004.1 Salmonella enterica strain PNUSAS392693 SAMN37859277-rid19852723.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOAFE010000042.1 Salmonella enterica strain PNUSAS392693 SAMN37859277-rid19852723.guided.18, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOAFE010000016.1 Salmonella enterica strain PNUSAS392693 SAMN37859277-rid19852723.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOAFE010000016.1 Salmonella enterica strain PNUSAS392693 SAMN37859277-rid19852723.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABOAFE010000002.1	401250..402118	100	869	0						
GCA_032807545.1_PDT001942454.1_genomic.fna	Salmonella_enterica	0.5216	405.443 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAFD010000002.1 Salmonella enterica strain PNUSAS392708 SAMN37859264-rid19852183.denovo.02, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAFD010000039.1 Salmonella enterica strain PNUSAS392708 SAMN37859264-rid19852183.guided.27, whole genome shotgun sequence	1140..1577	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAFD010000003.1	93868..94736	99.195	870	0						
GCA_032807565.1_PDT001942452.1_genomic.fna	Salmonella_enterica	0.521	390.438 KB	5	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAFF010000001.1 Salmonella enterica strain PNUSAS392747 SAMN37859273-rid19852173.denovo.01, whole genome shotgun sequence	396198..396635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAFF010000035.1 Salmonella enterica strain PNUSAS392747 SAMN37859273-rid19852173.guided.16, whole genome shotgun sequence	42396..42833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOAFF010000028.1 Salmonella enterica strain PNUSAS392747 SAMN37859273-rid19852173.denovo.30, whole genome shotgun sequence	547..675																																																																	
GCA_032807585.1_PDT001942451.1_genomic.fna	Salmonella_enterica	0.5213	223.58 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aadA2,aac(6')-Iaa,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAFG010000001.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.denovo.01, whole genome shotgun sequence	223719..224156	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOAFG010000039.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.denovo.39, whole genome shotgun sequence	7085..7876	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOAFG010000039.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.denovo.39, whole genome shotgun sequence	4680..5471	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOAFG010000060.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.denovo.68, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOAFG010000060.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.denovo.68, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aadA2	100	792/792	ABOAFG010000075.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.guided.42, whole genome shotgun sequence	6042..6833	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	100	438/438	ABOAFG010000076.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.guided.44, whole genome shotgun sequence	511..948	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOAFG010000077.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.guided.52, whole genome shotgun sequence	1774..2565	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOAFG010000081.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.guided.66, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOAFG010000081.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.guided.66, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOAFG010000057.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.denovo.63, whole genome shotgun sequence	529..1389	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOAFG010000084.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.guided.71, whole genome shotgun sequence	291..1151	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOAFG010000039.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.denovo.39, whole genome shotgun sequence	5564..6823	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOAFG010000047.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.denovo.49, whole genome shotgun sequence	2154..3367	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOAFG010000075.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.guided.42, whole genome shotgun sequence	7095..8354	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOAFG010000077.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.guided.52, whole genome shotgun sequence	422..1681	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOAFG010000079.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.guided.59, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOAFG010000085.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.guided.75, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOAFG010000086.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.guided.76, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABOAFG010000087.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.guided.77, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOAFG010000088.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.guided.78, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOAFG010000038.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.denovo.38, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOAFG010000039.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.denovo.39, whole genome shotgun sequence	833..2752	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOAFG010000078.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.guided.55, whole genome shotgun sequence	1550..2755	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOAFG010000080.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.guided.60, whole genome shotgun sequence	314..2233	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABOAFG010000039.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.denovo.39, whole genome shotgun sequence	8284..8781	Trimethoprim	AM040708	dfrA12	100	498/498	ABOAFG010000075.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.guided.42, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																															enterobacteriales	Col156	94.81	154 / 154	ABOAFG010000044.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.denovo.46, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABOAFG010000052.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.denovo.56, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABOAFG010000058.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.denovo.64, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOAFG010000035.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.denovo.35, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOAFG010000025.1 Salmonella enterica strain PNUSAS392709 SAMN37859265-rid19852713.denovo.25, whole genome shotgun sequence	55745..56241																											avrA	ABOAFG010000019.1	77576..78445	99.885	870	0						
GCA_032807605.1_PDT001942450.1_genomic.fna	Salmonella_enterica	0.5218	355.088 KB	5	aroC_481,dnaN_18,hemD_10,hisD_124,purE_5,sucA_10,thrA_14	2559	7:l,z13,z28:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_481	dnaN	100	100	dnaN_18	hemD	100	100	hemD_10	hisD	100	100	hisD_124	purE	100	100	purE_5	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	l,z13,z28	1,2	Salmonella enterica subspecies enterica (subspecies I)	I 7:l,z13,z28:1,2	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOAFH010000002.1 Salmonella enterica strain PNUSAS392706 SAMN37859262-rid19852163.denovo.02, whole genome shotgun sequence	37885..38322	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOAFH010000037.1 Salmonella enterica strain PNUSAS392706 SAMN37859262-rid19852163.guided.26, whole genome shotgun sequence	1594..2031	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAFH010000003.1	146360..147229	99.31	870	0						
GCA_032807625.1_PDT001942442.1_genomic.fna	Salmonella_enterica	0.5224	490.392 KB	4	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAFI010000001.1 Salmonella enterica strain FDA1234226-S010-011 SAMN37859152-rid19852113.denovo.01, whole genome shotgun sequence	658008..658445	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAFI010000021.1 Salmonella enterica strain FDA1234226-S010-011 SAMN37859152-rid19852113.guided.14, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032807645.1_PDT001942449.1_genomic.fna	Salmonella_enterica	0.5215	737.797 KB	2	aroC_11,dnaN_10,hemD_25,hisD_42,purE_40,sucA_13,thrA_4	411	4:e,h:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOAFL010000001.1 Salmonella enterica strain PNUSAS392688 SAMN37859266-rid19852153.denovo.01, whole genome shotgun sequence	623457..623894	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOAFL010000022.1 Salmonella enterica strain PNUSAS392688 SAMN37859266-rid19852153.guided.12, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAFL010000003.1	131937..132806	99.54	870	0						
GCA_032807665.1_PDT001942441.1_genomic.fna	Salmonella_enterica	0.5209	417.2 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAFJ010000001.1 Salmonella enterica strain FDA1197181-S009-015 SAMN37859149-rid19852673.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAFJ010000046.1 Salmonella enterica strain FDA1197181-S009-015 SAMN37859149-rid19852673.guided.20, whole genome shotgun sequence	35684..36121	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAFJ010000010.1	95244..96114	99.196	871	0						
GCA_032807805.1_PDT001942440.1_genomic.fna	Salmonella_enterica	0.5227	490.392 KB	4	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAFQ010000001.1 Salmonella enterica strain FDA1234226-S010-010 SAMN37859154-rid19852103.denovo.01, whole genome shotgun sequence	833960..834397	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAFQ010000023.1 Salmonella enterica strain FDA1234226-S010-010 SAMN37859154-rid19852103.guided.18, whole genome shotgun sequence	15797..16234	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032807845.1_PDT001942435.1_genomic.fna	Salmonella_enterica	0.5225	489.909 KB	3	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAFR010000001.1 Salmonella enterica strain FDA1234226-S010-012 SAMN37859145-rid19852073.denovo.01, whole genome shotgun sequence	1302229..1302666	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAFR010000016.1 Salmonella enterica strain FDA1234226-S010-012 SAMN37859145-rid19852073.guided.13, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032807865.1_PDT001942434.1_genomic.fna	Salmonella_enterica	0.5222	658.99 KB	2	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAFS010000001.1 Salmonella enterica strain FDA1234226-S010-001 SAMN37859146-rid19852063.denovo.01, whole genome shotgun sequence	677161..677598	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAFS010000019.1 Salmonella enterica strain FDA1234226-S010-001 SAMN37859146-rid19852063.guided.12, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032807885.1_PDT001942426.1_genomic.fna	Salmonella_enterica	0.5229	490.479 KB	4	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAFU010000001.1 Salmonella enterica strain FDA1234226-S010-016 SAMN37858758-rid19852623.denovo.01, whole genome shotgun sequence	676847..677284	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAFU010000024.1 Salmonella enterica strain FDA1234226-S010-016 SAMN37858758-rid19852623.guided.19, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032807905.1_PDT001942425.1_genomic.fna	Salmonella_enterica	0.5226	491.766 KB	3	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAFV010000001.1 Salmonella enterica strain FDA1234226-S010-015 SAMN37858747-rid19852003.denovo.01, whole genome shotgun sequence	1047807..1048244	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAFV010000022.1 Salmonella enterica strain FDA1234226-S010-015 SAMN37858747-rid19852003.guided.19, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032807925.1_PDT001942423.1_genomic.fna	Salmonella_enterica	0.5224	527.008 KB	3	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAFY010000001.1 Salmonella enterica strain FDA1234226-S010-002 SAMN37858746-rid19851983.denovo.01, whole genome shotgun sequence	1258846..1259283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAFY010000017.1 Salmonella enterica strain FDA1234226-S010-002 SAMN37858746-rid19851983.guided.15, whole genome shotgun sequence	8132..8569	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032807945.1_PDT001942424.1_genomic.fna	Salmonella_enterica	0.5224	527.158 KB	3	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAFW010000001.1 Salmonella enterica strain FDA1234226-S010-004 SAMN37858755-rid19851993.denovo.01, whole genome shotgun sequence	1255460..1255897	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAFW010000018.1 Salmonella enterica strain FDA1234226-S010-004 SAMN37858755-rid19851993.guided.14, whole genome shotgun sequence	341..778	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032807965.1_PDT001942422.1_genomic.fna	Salmonella_enterica	0.5226	383.136 KB	5	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAFX010000007.1 Salmonella enterica strain FDA1234226-S010-007 SAMN37858752-rid19851973.denovo.07, whole genome shotgun sequence	149776..150213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.64	367/438	ABOAFX010000026.1 Salmonella enterica strain FDA1234226-S010-007 SAMN37858752-rid19851973.guided.23, whole genome shotgun sequence	1..367	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032807985.1_PDT001942421.1_genomic.fna	Salmonella_enterica	0.5226	392.906 KB	4	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAFZ010000001.1 Salmonella enterica strain FDA1234226-S010-013 SAMN37858751-rid19852613.denovo.01, whole genome shotgun sequence	1047807..1048244	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAFZ010000025.1 Salmonella enterica strain FDA1234226-S010-013 SAMN37858751-rid19852613.guided.21, whole genome shotgun sequence	11021..11458	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032808005.1_PDT001942420.1_genomic.fna	Salmonella_enterica	0.5208	196.164 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAGA010000007.1 Salmonella enterica strain FDA1210576-C001-001 SAMN37858753-rid19851963.denovo.07, whole genome shotgun sequence	145185..145622	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAGA010000058.1 Salmonella enterica strain FDA1210576-C001-001 SAMN37858753-rid19851963.guided.42, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOAGA010000033.1 Salmonella enterica strain FDA1210576-C001-001 SAMN37858753-rid19851963.denovo.33, whole genome shotgun sequence	13551..14696	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOAGA010000060.1 Salmonella enterica strain FDA1210576-C001-001 SAMN37858753-rid19851963.guided.53, whole genome shotgun sequence	2618..3763	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOAGA010000027.1 Salmonella enterica strain FDA1210576-C001-001 SAMN37858753-rid19851963.denovo.27, whole genome shotgun sequence	21682..22497	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOAGA010000057.1 Salmonella enterica strain FDA1210576-C001-001 SAMN37858753-rid19851963.guided.39, whole genome shotgun sequence	16227..17042	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOAGA010000027.1 Salmonella enterica strain FDA1210576-C001-001 SAMN37858753-rid19851963.denovo.27, whole genome shotgun sequence	24674..25873	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOAGA010000057.1 Salmonella enterica strain FDA1210576-C001-001 SAMN37858753-rid19851963.guided.39, whole genome shotgun sequence	19219..20418	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOAGA010000048.1 Salmonella enterica strain FDA1210576-C001-001 SAMN37858753-rid19851963.denovo.52, whole genome shotgun sequence	371..501	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOAGA010000033.1 Salmonella enterica strain FDA1210576-C001-001 SAMN37858753-rid19851963.denovo.33, whole genome shotgun sequence	23679..23820																																																avrA	ABOAGA010000001.1	402588..403457	99.885	870	0						
GCA_032808025.1_PDT001942419.1_genomic.fna	Salmonella_enterica	0.5227	490.84 KB	3	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAGB010000001.1 Salmonella enterica strain FDA1234226-S010-005 SAMN37858756-rid19851953.denovo.01, whole genome shotgun sequence	1047807..1048244	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAGB010000020.1 Salmonella enterica strain FDA1234226-S010-005 SAMN37858756-rid19851953.guided.17, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032808045.1_PDT001942418.1_genomic.fna	Salmonella_enterica	0.5227	490.392 KB	5	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAGC010000002.1 Salmonella enterica strain FDA1234226-S010-003 SAMN37858748-rid19851943.denovo.02, whole genome shotgun sequence	134534..134971	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAGC010000022.1 Salmonella enterica strain FDA1234226-S010-003 SAMN37858748-rid19851943.guided.18, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032808065.1_PDT001942417.1_genomic.fna	Salmonella_enterica	0.5227	490.479 KB	3	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAGD010000001.1 Salmonella enterica strain FDA1234226-S010-006 SAMN37858749-rid19851933.denovo.01, whole genome shotgun sequence	1255460..1255897	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAGD010000022.1 Salmonella enterica strain FDA1234226-S010-006 SAMN37858749-rid19851933.guided.18, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032808085.1_PDT001942416.1_genomic.fna	Salmonella_enterica	0.5224	606.706 KB	3	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAGF010000001.1 Salmonella enterica strain FDA1234226-S010-017 SAMN37858750-rid19852603.denovo.01, whole genome shotgun sequence	1255460..1255897	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAGF010000018.1 Salmonella enterica strain FDA1234226-S010-017 SAMN37858750-rid19852603.guided.14, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032808105.1_PDT001942414.1_genomic.fna	Salmonella_enterica	0.5219	118.345 KB	13	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAGG010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310380 SAMN37858406-rid19851913.denovo.01, whole genome shotgun sequence	20243..20680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAGG010000092.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310380 SAMN37858406-rid19851913.guided.40, whole genome shotgun sequence	15883..16320	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAGG010000077.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310380 SAMN37858406-rid19851913.denovo.80, whole genome shotgun sequence	1575..2217	enterobacteriales	IncFII(S)	100	262 / 262	ABOAGG010000064.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310380 SAMN37858406-rid19851913.denovo.67, whole genome shotgun sequence	3271..3532																																																avrA	ABOAGG010000008.1	81741..82610	99.54	870	0						
GCA_032808115.1_PDT001942415.1_genomic.fna	Salmonella_enterica	0.5229	527.07 KB	3	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAGE010000001.1 Salmonella enterica strain FDA1234226-S010-014 SAMN37858745-rid19851923.denovo.01, whole genome shotgun sequence	1047805..1048242	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAGE010000021.1 Salmonella enterica strain FDA1234226-S010-014 SAMN37858745-rid19851923.guided.18, whole genome shotgun sequence	7168..7605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032808145.1_PDT001942412.1_genomic.fna	Salmonella_enterica	0.5207	208.125 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAGH010000007.1 Salmonella enterica strain FDA1210576-C001-006 SAMN37858383-rid19851893.denovo.07, whole genome shotgun sequence	145484..145921	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAGH010000050.1 Salmonella enterica strain FDA1210576-C001-006 SAMN37858383-rid19851893.guided.35, whole genome shotgun sequence	21321..21758	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOAGH010000023.1 Salmonella enterica strain FDA1210576-C001-006 SAMN37858383-rid19851893.denovo.23, whole genome shotgun sequence	27427..28572	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOAGH010000051.1 Salmonella enterica strain FDA1210576-C001-006 SAMN37858383-rid19851893.guided.39, whole genome shotgun sequence	20259..21404	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOAGH010000022.1 Salmonella enterica strain FDA1210576-C001-006 SAMN37858383-rid19851893.denovo.22, whole genome shotgun sequence	21681..22496	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOAGH010000052.1 Salmonella enterica strain FDA1210576-C001-006 SAMN37858383-rid19851893.guided.42, whole genome shotgun sequence	5825..6640	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOAGH010000022.1 Salmonella enterica strain FDA1210576-C001-006 SAMN37858383-rid19851893.denovo.22, whole genome shotgun sequence	24673..25872	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOAGH010000052.1 Salmonella enterica strain FDA1210576-C001-006 SAMN37858383-rid19851893.guided.42, whole genome shotgun sequence	8817..10016	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOAGH010000043.1 Salmonella enterica strain FDA1210576-C001-006 SAMN37858383-rid19851893.denovo.48, whole genome shotgun sequence	371..501	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOAGH010000023.1 Salmonella enterica strain FDA1210576-C001-006 SAMN37858383-rid19851893.denovo.23, whole genome shotgun sequence	37555..37696		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOAGH010000051.1 Salmonella enterica strain FDA1210576-C001-006 SAMN37858383-rid19851893.guided.39, whole genome shotgun sequence	11135..11276																																									avrA	ABOAGH010000001.1	507354..508223	99.885	870	0						
GCA_032808165.1_PDT001942413.1_genomic.fna	Salmonella_enterica	0.5222	486.572 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOAGI010000001.1 Salmonella enterica strain PNUSAS392675 SAMN37858371-rid19851903.denovo.01, whole genome shotgun sequence	638804..639241	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOAGI010000019.1 Salmonella enterica strain PNUSAS392675 SAMN37858371-rid19851903.guided.15, whole genome shotgun sequence	8809..9246	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOAGI010000007.1	174128..174997	99.655	870	0						
GCA_032808185.1_PDT001942411.1_genomic.fna	Salmonella_enterica	0.5215	639.834 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOAGJ010000001.1 Salmonella enterica strain PNUSAS392220 SAMN37858389-rid19852593.denovo.01, whole genome shotgun sequence	486986..487423	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOAGJ010000023.1 Salmonella enterica strain PNUSAS392220 SAMN37858389-rid19852593.guided.18, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAGJ010000003.1	544607..545475	99.425	870	0						
GCA_032808205.1_PDT001942406.1_genomic.fna	Salmonella_enterica	0.5208	430.61 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAGO010000001.1 Salmonella enterica strain PNUSAS392682 SAMN37858359-rid19852583.denovo.01, whole genome shotgun sequence	384787..385224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAGO010000042.1 Salmonella enterica strain PNUSAS392682 SAMN37858359-rid19852583.guided.23, whole genome shotgun sequence	12056..12493	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAGO010000002.1	504140..505010	99.196	871	0						
GCA_032808225.1_PDT001942410.1_genomic.fna	Salmonella_enterica	0.5214	492.854 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	ABOAGK010000001.1 Salmonella enterica strain PNUSAS392676 SAMN37858368-rid19851883.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABOAGK010000024.1 Salmonella enterica strain PNUSAS392676 SAMN37858368-rid19851883.guided.13, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.89	438/438	ABOAGK010000025.1 Salmonella enterica strain PNUSAS392676 SAMN37858368-rid19851883.guided.14, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABOAGK010000019.1 Salmonella enterica strain PNUSAS392676 SAMN37858368-rid19851883.denovo.23, whole genome shotgun sequence	3852..3982	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAGK010000017.1 Salmonella enterica strain PNUSAS392676 SAMN37858368-rid19851883.denovo.21, whole genome shotgun sequence	6818..7460		enterobacteriales	IncFII(S)	100	262 / 262	ABOAGK010000013.1 Salmonella enterica strain PNUSAS392676 SAMN37858368-rid19851883.denovo.15, whole genome shotgun sequence	3859..4120																																									avrA	ABOAGK010000002.1	552773..553642	99.54	870	0						
GCA_032808245.1_PDT001942409.1_genomic.fna	Salmonella_enterica	0.5194	120.655 KB	14	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAGL010000006.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310379 SAMN37858395-rid19851873.denovo.06, whole genome shotgun sequence	163870..164307	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAGL010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310379 SAMN37858395-rid19851873.denovo.54, whole genome shotgun sequence	6683..7519	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOAGL010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310379 SAMN37858395-rid19851873.denovo.54, whole genome shotgun sequence	7519..8322	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOAGL010000095.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310379 SAMN37858395-rid19851873.guided.48, whole genome shotgun sequence	15872..16309	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAGL010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310379 SAMN37858395-rid19851873.guided.58, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOAGL010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310379 SAMN37858395-rid19851873.guided.58, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOAGL010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310379 SAMN37858395-rid19851873.denovo.63, whole genome shotgun sequence	2393..3598	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOAGL010000097.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310379 SAMN37858395-rid19851873.guided.62, whole genome shotgun sequence	2424..3629	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOAGL010000062.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310379 SAMN37858395-rid19851873.denovo.67, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOAGL010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310379 SAMN37858395-rid19851873.denovo.54, whole genome shotgun sequence	5799..6060		enterobacteriales	IncFII	96.95	262 / 261	ABOAGL010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310379 SAMN37858395-rid19851873.guided.58, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOAGL010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310379 SAMN37858395-rid19851873.denovo.56, whole genome shotgun sequence	2153..2525																																		avrA	ABOAGL010000015.1	39484..40353	99.655	870	0						
GCA_032808265.1_PDT001942404.1_genomic.fna	Salmonella_enterica	0.5205	433.312 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAGP010000001.1 Salmonella enterica strain PNUSAS392215 SAMN37858404-rid19851833.denovo.01, whole genome shotgun sequence	780490..780927	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAGP010000026.1 Salmonella enterica strain PNUSAS392215 SAMN37858404-rid19851833.guided.20, whole genome shotgun sequence	4609..5046	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAGP010000015.1 Salmonella enterica strain PNUSAS392215 SAMN37858404-rid19851833.denovo.15, whole genome shotgun sequence	48668..49310	enterobacteriales	IncFII(S)	100	262 / 262	ABOAGP010000015.1 Salmonella enterica strain PNUSAS392215 SAMN37858404-rid19851833.denovo.15, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABOAGP010000017.1 Salmonella enterica strain PNUSAS392215 SAMN37858404-rid19851833.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABOAGP010000002.1	553553..554422	99.54	870	0						
GCA_032808285.1_PDT001942403.1_genomic.fna	Salmonella_enterica	0.522	222.456 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAGN010000001.1 Salmonella enterica strain PNUSAS392677 SAMN37858365-rid19851823.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAGN010000049.1 Salmonella enterica strain PNUSAS392677 SAMN37858365-rid19851823.guided.37, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOAGN010000002.1	208425..209293	99.77	870	0						
GCA_032808325.1_PDT001942400.1_genomic.fna	Salmonella_enterica	0.5213	431.585 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAGR010000001.1 Salmonella enterica strain PNUSAS392221 SAMN37858397-rid19851803.denovo.01, whole genome shotgun sequence	407341..407778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAGR010000034.1 Salmonella enterica strain PNUSAS392221 SAMN37858397-rid19851803.guided.21, whole genome shotgun sequence	12449..12886	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAGR010000002.1	514736..515604	99.195	870	0						
GCA_032808345.1_PDT001942401.1_genomic.fna	Salmonella_enterica	0.5214	504.603 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAGQ010000001.1 Salmonella enterica strain PNUSAS392214 SAMN37858396-rid19852573.denovo.01, whole genome shotgun sequence	611192..611629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAGQ010000027.1 Salmonella enterica strain PNUSAS392214 SAMN37858396-rid19852573.guided.17, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAGQ010000002.1	514960..515828	99.195	870	0						
GCA_032808365.1_PDT001942399.1_genomic.fna	Salmonella_enterica	0.5215	215.934 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aph(4)-Ia,aadA1,aadA1,aph(3')-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAGS010000001.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.denovo.01, whole genome shotgun sequence	463401..463838	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOAGS010000015.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.denovo.15, whole genome shotgun sequence	83374..84399	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOAGS010000015.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.denovo.15, whole genome shotgun sequence	84628..85404	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABOAGS010000027.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.denovo.28, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAGS010000027.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.denovo.28, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOAGS010000047.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.denovo.55, whole genome shotgun sequence	93..908	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	X62115	aac(6')-Iaa	97.49	438/438	ABOAGS010000052.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.guided.37, whole genome shotgun sequence	8009..8446	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOAGS010000054.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.guided.40, whole genome shotgun sequence	263..1288	Hygromycin	V01499	aadA1	99.75	792/792	ABOAGS010000056.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.guided.50, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAGS010000056.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.guided.50, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOAGS010000057.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.guided.53, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	X62115	aac(3)-IV	100	777/777	ABOAGS010000058.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.guided.56, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABOAGS010000027.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.denovo.28, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABOAGS010000053.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.guided.39, whole genome shotgun sequence	434..1273	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOAGS010000027.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.denovo.28, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOAGS010000055.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.guided.48, whole genome shotgun sequence	1782..2981	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOAGS010000031.1 Salmonella enterica strain PNUSAS392225 SAMN37858398-rid19851793.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABOAGS010000003.1	94085..94954	99.655	870	0						
GCA_032808405.1_PDT001942398.1_genomic.fna	Salmonella_enterica	0.5212	703.096 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAGU010000001.1 Salmonella enterica strain PNUSAS392213 SAMN37858399-rid19851783.denovo.01, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAGU010000034.1 Salmonella enterica strain PNUSAS392213 SAMN37858399-rid19851783.guided.23, whole genome shotgun sequence	909..1346	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOAGU010000012.1 Salmonella enterica strain PNUSAS392213 SAMN37858399-rid19851783.denovo.12, whole genome shotgun sequence	69710..69851																																																						avrA	ABOAGU010000002.1	625081..625949	99.195	870	0						
GCA_032808425.1_PDT001942396.1_genomic.fna	Salmonella_enterica	0.5231	60.903 KB	23	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	-:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	-	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:l,z13:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOAGV010000017.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310274 SAMN37858362-rid19852563.denovo.017, whole genome shotgun sequence	11318..11755	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOAGV010000149.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310274 SAMN37858362-rid19852563.guided.033, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAGV010000037.1	43674..44542	99.655	869	0						
GCA_032808465.1_PDT001942392.1_genomic.fna	Salmonella_enterica	0.5224	490.392 KB	3	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_551,thrA_611	2821	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_551	thrA	100	100	thrA_611	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAGY010000001.1 Salmonella enterica strain FDA1234226-S010-009 SAMN37858374-rid19851733.denovo.01, whole genome shotgun sequence	1047807..1048244	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAGY010000021.1 Salmonella enterica strain FDA1234226-S010-009 SAMN37858374-rid19851733.guided.17, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032808485.1_PDT001942394.1_genomic.fna	Salmonella_enterica	0.5214	452.332 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOAGX010000001.1 Salmonella enterica strain PNUSAS392222 SAMN37858405-rid19851753.denovo.01, whole genome shotgun sequence	398384..398821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOAGX010000026.1 Salmonella enterica strain PNUSAS392222 SAMN37858405-rid19851753.guided.17, whole genome shotgun sequence	36801..37238	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAGX010000002.1	496398..497266	99.425	870	0						
GCA_032808525.1_PDT001942390.1_genomic.fna	Salmonella_enterica	0.5226	397.626 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAHB010000001.1 Salmonella enterica strain PNUSAS392216 SAMN37858391-rid19851723.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAHB010000027.1 Salmonella enterica strain PNUSAS392216 SAMN37858391-rid19851723.guided.19, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAHB010000002.1	183134..184003	98.966	870	0						
GCA_032808545.1_PDT001942393.1_genomic.fna	Salmonella_enterica	0.5219	277.605 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOAGZ010000003.1 Salmonella enterica strain PNUSAS392224 SAMN37858400-rid19851743.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOAGZ010000035.1 Salmonella enterica strain PNUSAS392224 SAMN37858400-rid19851743.guided.28, whole genome shotgun sequence	20671..21108	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOAGZ010000023.1 Salmonella enterica strain PNUSAS392224 SAMN37858400-rid19851743.denovo.23, whole genome shotgun sequence	44728..45370	enterobacteriales	IncFII(S)	100	262 / 262	ABOAGZ010000023.1 Salmonella enterica strain PNUSAS392224 SAMN37858400-rid19851743.denovo.23, whole genome shotgun sequence	29382..29643																																																avrA	ABOAGZ010000001.1	446675..447543	100	869	0						
GCA_032808565.1_PDT001942387.1_genomic.fna	Salmonella_enterica	0.5215	727.277 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOAHC010000001.1 Salmonella enterica strain PNUSAS392226 SAMN37858394-rid19851693.denovo.01, whole genome shotgun sequence	486951..487388	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOAHC010000022.1 Salmonella enterica strain PNUSAS392226 SAMN37858394-rid19851693.guided.18, whole genome shotgun sequence	2279..2716	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAHC010000003.1	544607..545475	99.425	870	0						
GCA_032808585.1_PDT001942391.1_genomic.fna	Salmonella_enterica	0.5218	162.249 KB	10	aroC_41,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	2129	-:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	-	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:y:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOAHA010000002.1 Salmonella enterica strain PNUSAS392227 SAMN37858401-rid19852553.denovo.02, whole genome shotgun sequence	371042..371479	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOAHA010000055.1 Salmonella enterica strain PNUSAS392227 SAMN37858401-rid19852553.guided.42, whole genome shotgun sequence	14541..14978	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032808605.1_PDT001942386.1_genomic.fna	Salmonella_enterica	0.5209	682.666 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOAHE010000001.1 Salmonella enterica strain PNUSAS392218 SAMN37858384-rid19852543.denovo.01, whole genome shotgun sequence	486957..487394	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOAHE010000022.1 Salmonella enterica strain PNUSAS392218 SAMN37858384-rid19852543.guided.14, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAHE010000002.1	544386..545254	99.425	870	0						
GCA_032808625.1_PDT001942384.1_genomic.fna	Salmonella_enterica	0.5206	231.101 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAHD010000008.1 Salmonella enterica strain FDA1210576-C001-003 SAMN37858379-rid19851673.denovo.08, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAHD010000048.1 Salmonella enterica strain FDA1210576-C001-003 SAMN37858379-rid19851673.guided.25, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOAHD010000016.1 Salmonella enterica strain FDA1210576-C001-003 SAMN37858379-rid19851673.denovo.16, whole genome shotgun sequence	72247..73392	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOAHD010000051.1 Salmonella enterica strain FDA1210576-C001-003 SAMN37858379-rid19851673.guided.37, whole genome shotgun sequence	25020..26165	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOAHD010000024.1 Salmonella enterica strain FDA1210576-C001-003 SAMN37858379-rid19851673.denovo.24, whole genome shotgun sequence	21681..22496	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOAHD010000050.1 Salmonella enterica strain FDA1210576-C001-003 SAMN37858379-rid19851673.guided.34, whole genome shotgun sequence	21722..22537	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOAHD010000024.1 Salmonella enterica strain FDA1210576-C001-003 SAMN37858379-rid19851673.denovo.24, whole genome shotgun sequence	24673..25872	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOAHD010000050.1 Salmonella enterica strain FDA1210576-C001-003 SAMN37858379-rid19851673.guided.34, whole genome shotgun sequence	24714..25913	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOAHD010000039.1 Salmonella enterica strain FDA1210576-C001-003 SAMN37858379-rid19851673.denovo.44, whole genome shotgun sequence	371..501	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOAHD010000016.1 Salmonella enterica strain FDA1210576-C001-003 SAMN37858379-rid19851673.denovo.16, whole genome shotgun sequence	82375..82516		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOAHD010000051.1 Salmonella enterica strain FDA1210576-C001-003 SAMN37858379-rid19851673.guided.37, whole genome shotgun sequence	15896..16037																																									avrA	ABOAHD010000001.1	402493..403362	99.885	870	0						
GCA_032808645.1_PDT001942383.1_genomic.fna	Salmonella_enterica	0.5197	212.051 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAHF010000003.1 Salmonella enterica strain PNUSAS392223 SAMN37858387-rid19851663.denovo.03, whole genome shotgun sequence	270832..271269	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAHF010000045.1 Salmonella enterica strain PNUSAS392223 SAMN37858387-rid19851663.guided.33, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABOAHF010000022.1 Salmonella enterica strain PNUSAS392223 SAMN37858387-rid19851663.denovo.22, whole genome shotgun sequence	62742..63384	enterobacteriales	IncY	99.74	765 / 765	ABOAHF010000017.1 Salmonella enterica strain PNUSAS392223 SAMN37858387-rid19851663.denovo.17, whole genome shotgun sequence	30017..30781																																																											
GCA_032808665.1_PDT001942381.1_genomic.fna	Salmonella_enterica	0.5231	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAHG010000001.1 Salmonella enterica strain PNUSAS392217 SAMN37858376-rid19852533.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAHG010000036.1 Salmonella enterica strain PNUSAS392217 SAMN37858376-rid19852533.guided.27, whole genome shotgun sequence	244..681	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAHG010000003.1	94085..94954	99.655	870	0						
GCA_032808685.1_PDT001942379.1_genomic.fna	Salmonella_enterica	0.5215	386.747 KB	4	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColpVC	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOAHI010000001.1 Salmonella enterica strain PNUSAS392219 SAMN37858381-rid19851633.denovo.01, whole genome shotgun sequence	727260..727697	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOAHI010000029.1 Salmonella enterica strain PNUSAS392219 SAMN37858381-rid19851633.guided.20, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	100	193 / 193	ABOAHI010000022.1 Salmonella enterica strain PNUSAS392219 SAMN37858381-rid19851633.denovo.25, whole genome shotgun sequence	192..384																																																						avrA	ABOAHI010000002.1	571853..572722	99.31	870	0						
GCA_032808705.1_PDT001942380.1_genomic.fna	Salmonella_enterica	0.5223	387.133 KB	6	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col8282,IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOAHH010000005.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.denovo.05, whole genome shotgun sequence	246390..246827	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAHH010000028.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.denovo.32, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOAHH010000028.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.denovo.32, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOAHH010000028.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.denovo.32, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOAHH010000028.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.denovo.32, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOAHH010000028.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.denovo.32, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOAHH010000047.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.guided.28, whole genome shotgun sequence	548..985	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAHH010000048.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.guided.31, whole genome shotgun sequence	2008..2844	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOAHH010000048.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.guided.31, whole genome shotgun sequence	1206..2008	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOAHH010000048.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.guided.31, whole genome shotgun sequence	1205..2008	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOAHH010000048.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.guided.31, whole genome shotgun sequence	1205..2008	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOAHH010000048.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.guided.31, whole genome shotgun sequence	1205..2008	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOAHH010000025.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.denovo.27, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOAHH010000049.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.guided.34, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.24	116 / 131	ABOAHH010000027.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.denovo.30, whole genome shotgun sequence	1226..1341	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOAHH010000030.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.denovo.35, whole genome shotgun sequence	3094..3224		enterobacteriales	Col8282	90.1	202 / 207	ABOAHH010000031.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.denovo.36, whole genome shotgun sequence	416..617		enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	ABOAHH010000015.1 Salmonella enterica strain FDA1210576-C001-007 SAMN37858373-rid19851643.denovo.15, whole genome shotgun sequence	73680..73819																																		avrA	ABOAHH010000003.1	39546..40415	99.655	870	0						
GCA_032808745.1_PDT001942378.1_genomic.fna	Salmonella_enterica	0.5212	62.025 KB	22	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAHL010000019.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310267 SAMN37858356-rid19851623.denovo.019, whole genome shotgun sequence	52312..52749	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAHL010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310267 SAMN37858356-rid19851623.denovo.088, whole genome shotgun sequence	9118..9954	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOAHL010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310267 SAMN37858356-rid19851623.denovo.088, whole genome shotgun sequence	9954..10757	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOAHL010000166.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310267 SAMN37858356-rid19851623.guided.063, whole genome shotgun sequence	15209..15646	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAHL010000168.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310267 SAMN37858356-rid19851623.guided.110, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOAHL010000168.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310267 SAMN37858356-rid19851623.guided.110, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOAHL010000113.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310267 SAMN37858356-rid19851623.denovo.118, whole genome shotgun sequence	2205..3410	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOAHL010000169.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310267 SAMN37858356-rid19851623.guided.116, whole genome shotgun sequence	2236..3441	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOAHL010000109.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310267 SAMN37858356-rid19851623.denovo.113, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOAHL010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310267 SAMN37858356-rid19851623.denovo.088, whole genome shotgun sequence	8234..8495		enterobacteriales	IncFII	96.95	262 / 261	ABOAHL010000168.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310267 SAMN37858356-rid19851623.guided.110, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOAHL010000130.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310267 SAMN37858356-rid19851623.denovo.135, whole genome shotgun sequence	1135..1507																																		avrA	ABOAHL010000017.1	39484..40353	99.655	870	0						
GCA_032808785.1_PDT001942372.1_genomic.fna	Salmonella_enterica	0.5203	172.335 KB	10	aroC_117,dnaN_295,hemD_10,hisD_100,purE_38,sucA_9,thrA_303	2361	9:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_117	dnaN	100	100	dnaN_295	hemD	100	100	hemD_10	hisD	100	100	hisD_100	purE	100	100	purE_38	sucA	100	100	sucA_9	thrA	100	100	thrA_303	9	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Pensacola		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOAHM010000007.1 Salmonella enterica strain PNUSAS392679 SAMN37858363-rid19851573.denovo.07, whole genome shotgun sequence	42614..43051	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOAHM010000057.1 Salmonella enterica strain PNUSAS392679 SAMN37858363-rid19851573.guided.34, whole genome shotgun sequence	25025..25462	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAHM010000012.1	94105..94974	99.08	870	0						
GCA_032808805.1_PDT001942371.1_genomic.fna	Salmonella_enterica	0.5209	427.141 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAHN010000001.1 Salmonella enterica strain PNUSAS392674 SAMN37858370-rid19852513.denovo.01, whole genome shotgun sequence	420375..420812	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAHN010000044.1 Salmonella enterica strain PNUSAS392674 SAMN37858370-rid19852513.guided.22, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAHN010000002.1	505118..505988	99.196	871	0						
GCA_032808825.1_PDT001942369.1_genomic.fna	Salmonella_enterica	0.5211	326.844 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAHP010000002.1 Salmonella enterica strain PNUSAS392681 SAMN37858372-rid19851553.denovo.02, whole genome shotgun sequence	462162..462599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAHP010000032.1 Salmonella enterica strain PNUSAS392681 SAMN37858372-rid19851553.guided.24, whole genome shotgun sequence	4119..4556	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAHP010000001.1	551339..552208	99.195	870	0						
GCA_032808845.1_PDT001942370.1_genomic.fna	Salmonella_enterica	0.5216	236.099 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOAHO010000001.1 Salmonella enterica strain PNUSAS392680 SAMN37858361-rid19851563.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOAHO010000046.1 Salmonella enterica strain PNUSAS392680 SAMN37858361-rid19851563.guided.32, whole genome shotgun sequence	12464..12901	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOAHO010000025.1 Salmonella enterica strain PNUSAS392680 SAMN37858361-rid19851563.denovo.25, whole genome shotgun sequence	44728..45370	enterobacteriales	IncFII(S)	100	262 / 262	ABOAHO010000025.1 Salmonella enterica strain PNUSAS392680 SAMN37858361-rid19851563.denovo.25, whole genome shotgun sequence	29382..29643																																																avrA	ABOAHO010000006.1	95312..96180	100	869	0						
GCA_032808865.1_PDT001942368.1_genomic.fna	Salmonella_enterica	0.5214	400.829 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAHQ010000001.1 Salmonella enterica strain PNUSAS392684 SAMN37858369-rid19851543.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAHQ010000025.1 Salmonella enterica strain PNUSAS392684 SAMN37858369-rid19851543.guided.20, whole genome shotgun sequence	2534..2971	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAHQ010000019.1 Salmonella enterica strain PNUSAS392684 SAMN37858369-rid19851543.denovo.21, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOAHQ010000016.1 Salmonella enterica strain PNUSAS392684 SAMN37858369-rid19851543.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABOAHQ010000002.1	174837..175706	99.54	870	0						
GCA_032808885.1_PDT001942367.1_genomic.fna	Salmonella_enterica	0.5236	112.769 KB	15	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	-:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOAHR010000003.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS32310265 SAMN37858352-rid19851533.denovo.03, whole genome shotgun sequence	38468..38905	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOAHR010000093.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS32310265 SAMN37858352-rid19851533.guided.59, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAHR010000007.1	145338..146207	99.425	870	0						
GCA_032808925.1_PDT001942364.1_genomic.fna	Salmonella_enterica	0.5244	57.311 KB	25	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAHU010000059.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS32310269 SAMN37858360-rid19851513.denovo.059, whole genome shotgun sequence	12481..12918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAHU010000139.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS32310269 SAMN37858360-rid19851513.guided.089, whole genome shotgun sequence	14132..14569	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032808965.1_PDT001942363.1_genomic.fna	Salmonella_enterica	0.5211	185.71 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAHV010000001.1 Salmonella enterica strain PNUSAS392678 SAMN37858367-rid19851503.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAHV010000055.1 Salmonella enterica strain PNUSAS392678 SAMN37858367-rid19851503.guided.38, whole genome shotgun sequence	12100..12537	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABOAHV010000044.1 Salmonella enterica strain PNUSAS392678 SAMN37858367-rid19851503.denovo.47, whole genome shotgun sequence	3981..4111																																																						avrA	ABOAHV010000010.1	94139..95007	99.77	870	0						
GCA_032809005.1_PDT001942361.1_genomic.fna	Salmonella_enterica	0.5212	356.744 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAHX010000001.1 Salmonella enterica strain PNUSAS392683 SAMN37858366-rid19852493.denovo.01, whole genome shotgun sequence	706608..707045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAHX010000030.1 Salmonella enterica strain PNUSAS392683 SAMN37858366-rid19852493.guided.23, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAHX010000020.1 Salmonella enterica strain PNUSAS392683 SAMN37858366-rid19852493.denovo.21, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOAHX010000021.1 Salmonella enterica strain PNUSAS392683 SAMN37858366-rid19852493.denovo.24, whole genome shotgun sequence	3403..3664																																																avrA	ABOAHX010000002.1	553642..554511	99.54	870	0						
GCA_032809025.1_PDT001942359.1_genomic.fna	Salmonella_enterica	0.5237	57.386 KB	23	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAHY010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310266 SAMN37858354-rid19851473.denovo.050, whole genome shotgun sequence	15438..15875	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAHY010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310266 SAMN37858354-rid19851473.guided.067, whole genome shotgun sequence	14098..14535	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAHY010000018.1	62098..62967	99.655	870	0						
GCA_032809045.1_PDT001942358.1_genomic.fna	Salmonella_enterica	0.5219	46.869 KB	35	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAHZ010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310268 SAMN37858358-rid19851463.denovo.064, whole genome shotgun sequence	11492..11929	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOAHZ010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310268 SAMN37858358-rid19851463.denovo.069, whole genome shotgun sequence	22999..23790	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAHZ010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310268 SAMN37858358-rid19851463.denovo.069, whole genome shotgun sequence	22999..23790	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOAHZ010000211.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310268 SAMN37858358-rid19851463.guided.102, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOAHZ010000216.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310268 SAMN37858358-rid19851463.guided.165, whole genome shotgun sequence	7..798	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAHZ010000216.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310268 SAMN37858358-rid19851463.guided.165, whole genome shotgun sequence	7..798	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABOAHZ010000154.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310268 SAMN37858358-rid19851463.denovo.159, whole genome shotgun sequence	834..1709	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOAHZ010000215.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310268 SAMN37858358-rid19851463.guided.158, whole genome shotgun sequence	840..1715	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABOAHZ010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310268 SAMN37858358-rid19851463.denovo.069, whole genome shotgun sequence	21655..22494	Sulfamethoxazole	U12338	sul1	100	840/840	ABOAHZ010000216.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310268 SAMN37858358-rid19851463.guided.165, whole genome shotgun sequence	1303..2142	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOAHZ010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310268 SAMN37858358-rid19851463.denovo.069, whole genome shotgun sequence	7939..9138	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOAHZ010000214.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310268 SAMN37858358-rid19851463.guided.130, whole genome shotgun sequence	5027..6226	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOAHZ010000143.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310268 SAMN37858358-rid19851463.denovo.147, whole genome shotgun sequence	2174..2733																																																						avrA	ABOAHZ010000016.1	61399..62268	99.655	870	0						
GCA_032809065.1_PDT001942357.1_genomic.fna	Salmonella_enterica	0.5215	108.1 KB	12	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOAIA010000002.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310375 SAMN37858347-rid19851453.denovo.02, whole genome shotgun sequence	389214..389651	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAIA010000053.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310375 SAMN37858347-rid19851453.denovo.54, whole genome shotgun sequence	6372..7208	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABOAIA010000053.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310375 SAMN37858347-rid19851453.denovo.54, whole genome shotgun sequence	5341..6154	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	V00359	aph(3'')-Ib	100	804/804	ABOAIA010000053.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310375 SAMN37858347-rid19851453.denovo.54, whole genome shotgun sequence	7208..8011	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABOAIA010000092.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310375 SAMN37858347-rid19851453.guided.59, whole genome shotgun sequence	9163..9600	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAIA010000093.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310375 SAMN37858347-rid19851453.guided.60, whole genome shotgun sequence	3276..4112	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABOAIA010000093.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310375 SAMN37858347-rid19851453.guided.60, whole genome shotgun sequence	4330..5143	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	V00359	aph(3'')-Ib	100	804/804	ABOAIA010000093.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310375 SAMN37858347-rid19851453.guided.60, whole genome shotgun sequence	2473..3276	Streptomycin	AF321551	sul2	99.88	816/816	ABOAIA010000051.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310375 SAMN37858347-rid19851453.denovo.52, whole genome shotgun sequence	3077..3892	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABOAIA010000091.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310375 SAMN37858347-rid19851453.guided.58, whole genome shotgun sequence	10110..10925	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOAIA010000060.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310375 SAMN37858347-rid19851453.denovo.66, whole genome shotgun sequence	2391..3596	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOAIA010000094.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310375 SAMN37858347-rid19851453.guided.65, whole genome shotgun sequence	2412..3617	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOAIA010000062.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310375 SAMN37858347-rid19851453.denovo.68, whole genome shotgun sequence	557..687																																																						avrA	ABOAIA010000034.1	43670..44538	99.655	869	0						
GCA_032809085.1_PDT001942351.1_genomic.fna	Salmonella_enterica	0.5225	76.633 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAIC010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310378 SAMN37858349-rid19852473.denovo.059, whole genome shotgun sequence	14052..14489	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOAIC010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310378 SAMN37858349-rid19852473.denovo.062, whole genome shotgun sequence	22915..23706	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAIC010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310378 SAMN37858349-rid19852473.denovo.062, whole genome shotgun sequence	22915..23706	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOAIC010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310378 SAMN37858349-rid19852473.guided.075, whole genome shotgun sequence	14083..14520	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOAIC010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310378 SAMN37858349-rid19852473.guided.087, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAIC010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310378 SAMN37858349-rid19852473.guided.087, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOAIC010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310378 SAMN37858349-rid19852473.denovo.062, whole genome shotgun sequence	21571..22410	Sulfamethoxazole	U12338	sul1	100	840/840	ABOAIC010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310378 SAMN37858349-rid19852473.guided.087, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOAIC010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310378 SAMN37858349-rid19852473.denovo.062, whole genome shotgun sequence	7855..9054	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOAIC010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310378 SAMN37858349-rid19852473.guided.072, whole genome shotgun sequence	7795..8994	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOAIC010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310378 SAMN37858349-rid19852473.denovo.073, whole genome shotgun sequence	14027..14586																																																						avrA	ABOAIC010000003.1	149828..150697	99.655	870	0						
GCA_032809105.1_PDT001942356.1_genomic.fna	Salmonella_enterica	0.5206	91.44 KB	16	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	-:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAIB010000003.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS32310373 SAMN37858345-rid19852483.denovo.003, whole genome shotgun sequence	15383..15820	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAIB010000078.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS32310373 SAMN37858345-rid19852483.denovo.082, whole genome shotgun sequence	5188..6024	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOAIB010000078.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS32310373 SAMN37858345-rid19852483.denovo.082, whole genome shotgun sequence	6024..6827	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOAIB010000132.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS32310373 SAMN37858345-rid19852483.guided.048, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAIB010000137.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS32310373 SAMN37858345-rid19852483.guided.085, whole genome shotgun sequence	2773..3609	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOAIB010000137.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS32310373 SAMN37858345-rid19852483.guided.085, whole genome shotgun sequence	1970..2773	Streptomycin	AF321551	fosA7	96.22	423/423	ABOAIB010000010.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS32310373 SAMN37858345-rid19852483.denovo.010, whole genome shotgun sequence	94859..95281	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	ABOAIB010000136.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS32310373 SAMN37858345-rid19852483.guided.084, whole genome shotgun sequence	5218..5640	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	ABOAIB010000102.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS32310373 SAMN37858345-rid19852483.denovo.109, whole genome shotgun sequence	55..1260	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOAIB010000138.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS32310373 SAMN37858345-rid19852483.guided.107, whole genome shotgun sequence	86..1291	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOAIB010000088.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS32310373 SAMN37858345-rid19852483.denovo.094, whole genome shotgun sequence	1833..2514	enterobacteriales	IncFII	96.95	262 / 261	ABOAIB010000078.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS32310373 SAMN37858345-rid19852483.denovo.082, whole genome shotgun sequence	4304..4565		enterobacteriales	IncFII	96.95	262 / 261	ABOAIB010000137.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS32310373 SAMN37858345-rid19852483.guided.085, whole genome shotgun sequence	4232..4493		enterobacteriales	IncX1	100	373 / 373	ABOAIB010000070.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS32310373 SAMN37858345-rid19852483.denovo.074, whole genome shotgun sequence	2153..2525																																		avrA	ABOAIB010000033.1	43149..44018	99.08	870	0						
GCA_032809125.1_PDT001942350.1_genomic.fna	Salmonella_enterica	0.5213	144.99 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAIE010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310377 SAMN37858348-rid19851403.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAIE010000072.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310377 SAMN37858348-rid19851403.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAIE010000054.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310377 SAMN37858348-rid19851403.denovo.57, whole genome shotgun sequence	2226..2868	enterobacteriales	IncFII(S)	100	262 / 262	ABOAIE010000049.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310377 SAMN37858348-rid19851403.denovo.52, whole genome shotgun sequence	3397..3658																																																avrA	ABOAIE010000005.1	149446..150315	99.54	870	0						
GCA_032809145.1_PDT001942348.1_genomic.fna	Salmonella_enterica	0.521	88.12 KB	19	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAIF010000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310374 SAMN37858346-rid19851383.denovo.001, whole genome shotgun sequence	12533..12970	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAIF010000084.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310374 SAMN37858346-rid19851383.denovo.089, whole genome shotgun sequence	5..841	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOAIF010000084.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310374 SAMN37858346-rid19851383.denovo.089, whole genome shotgun sequence	841..1644	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOAIF010000130.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310374 SAMN37858346-rid19851383.guided.063, whole genome shotgun sequence	12427..12864	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAIF010000133.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310374 SAMN37858346-rid19851383.guided.087, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOAIF010000133.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310374 SAMN37858346-rid19851383.guided.087, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOAIF010000099.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310374 SAMN37858346-rid19851383.denovo.105, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOAIF010000134.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310374 SAMN37858346-rid19851383.guided.103, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOAIF010000084.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310374 SAMN37858346-rid19851383.denovo.089, whole genome shotgun sequence	1705..2520	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOAIF010000133.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310374 SAMN37858346-rid19851383.guided.087, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOAIF010000065.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310374 SAMN37858346-rid19851383.denovo.067, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOAIF010000132.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32310374 SAMN37858346-rid19851383.guided.081, whole genome shotgun sequence	5926..7131	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABOAIF010000002.1	93863..94732	99.885	870	0						
GCA_032809425.1_PDT001941953.1_genomic.fna	Salmonella_enterica	0.5208	426.745 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOAIR010000002.1 Salmonella enterica strain PNUSAS392455 SAMN37857056-rid19850583.denovo.02, whole genome shotgun sequence	422232..422669	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOAIR010000031.1 Salmonella enterica strain PNUSAS392455 SAMN37857056-rid19850583.guided.17, whole genome shotgun sequence	18588..19025	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOAIR010000015.1 Salmonella enterica strain PNUSAS392455 SAMN37857056-rid19850583.denovo.15, whole genome shotgun sequence	34957..35490																																																						avrA	ABOAIR010000003.1	395430..396298	99.425	870	0						
GCA_032809445.1_PDT001941912.1_genomic.fna	Salmonella_enterica	0.5195	366.643 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAIT010000001.1 Salmonella enterica strain PNUSAS392427 SAMN37856661-rid19850993.denovo.01, whole genome shotgun sequence	136534..136971	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAIT010000032.1 Salmonella enterica strain PNUSAS392427 SAMN37856661-rid19850993.guided.18, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABOAIT010000025.1 Salmonella enterica strain PNUSAS392427 SAMN37856661-rid19850993.denovo.28, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABOAIT010000019.1 Salmonella enterica strain PNUSAS392427 SAMN37856661-rid19850993.denovo.20, whole genome shotgun sequence	6118..6651		enterobacteriales	IncX1	98.4	374 / 374	ABOAIT010000022.1 Salmonella enterica strain PNUSAS392427 SAMN37856661-rid19850993.denovo.23, whole genome shotgun sequence	6956..7329																																									avrA	ABOAIT010000009.1	150695..151565	99.196	871	0						
GCA_032809465.1_PDT001941903.1_genomic.fna	Salmonella_enterica	0.5218	381.862 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAIS010000001.1 Salmonella enterica strain PNUSAS392129 SAMN37856551-rid19850153.denovo.01, whole genome shotgun sequence	519287..519724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAIS010000027.1 Salmonella enterica strain PNUSAS392129 SAMN37856551-rid19850153.guided.15, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAIS010000011.1	173604..174472	99.195	870	0						
GCA_032809765.1_PDT001941951.1_genomic.fna	Salmonella_enterica	0.5203	377.944 KB	6	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOAIU010000001.1 Salmonella enterica strain PNUSAS392456 SAMN37857055-rid19850563.denovo.01, whole genome shotgun sequence	682221..682658	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOAIU010000077.1 Salmonella enterica strain PNUSAS392456 SAMN37857055-rid19850563.guided.21, whole genome shotgun sequence	23279..23716	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOAIU010000029.1 Salmonella enterica strain PNUSAS392456 SAMN37857055-rid19850563.denovo.32, whole genome shotgun sequence	5946..6588																																																						avrA	ABOAIU010000004.1	106603..107472	99.655	870	0						
GCA_032810085.1_PDT001941129.1_genomic.fna	Salmonella_enterica	0.5218	443.911 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABNXUS010000001.1 Salmonella enterica strain PNUSAS391743 SAMN37846517-rid19843363.denovo.01, whole genome shotgun sequence	683905..684342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABNXUS010000027.1 Salmonella enterica strain PNUSAS391743 SAMN37846517-rid19843363.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABNXUS010000020.1 Salmonella enterica strain PNUSAS391743 SAMN37846517-rid19843363.denovo.23, whole genome shotgun sequence	1708..1838																																																						avrA	ABNXUS010000002.1	563803..564672	99.77	870	0						
GCA_032810205.1_PDT001783481.1_genomic.fna	Salmonella_enterica	0.5229	109.468 KB	14	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAIY010000024.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS32309713 SAMN35784509-rid18513753.denovo.24, whole genome shotgun sequence	12510..12947	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAIY010000081.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS32309713 SAMN35784509-rid18513753.guided.43, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032810345.1_PDT001783490.1_genomic.fna	Salmonella_enterica	0.5222	97.997 KB	15	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	10	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAJH010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.denovo.027, whole genome shotgun sequence	12445..12882	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOAJH010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.denovo.043, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAJH010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.denovo.043, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOAJH010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.denovo.090, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOAJH010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.denovo.090, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOAJH010000105.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.denovo.115, whole genome shotgun sequence	93..908	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	X62115	aac(6')-Iaa	97.49	438/438	ABOAJH010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.guided.056, whole genome shotgun sequence	18849..19286	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOAJH010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.guided.078, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAJH010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.guided.078, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOAJH010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.guided.091, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOAJH010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.guided.091, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOAJH010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.guided.113, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	X62115	blaCTX-M-65	100	876/876	ABOAJH010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.denovo.098, whole genome shotgun sequence	228..1103	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOAJH010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.guided.097, whole genome shotgun sequence	259..1134	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOAJH010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.denovo.085, whole genome shotgun sequence	3320..4533	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOAJH010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.guided.087, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOAJH010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.denovo.043, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOAJH010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.guided.078, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOAJH010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.denovo.043, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOAJH010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.guided.075, whole genome shotgun sequence	7294..8493	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOAJH010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.denovo.082, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOAJH010000119.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.guided.100, whole genome shotgun sequence	221..694	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOAJH010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309717 SAMN35784517-rid18513843.denovo.039, whole genome shotgun sequence	32523..33082																																																						avrA	ABOAJH010000011.1	93814..94683	99.655	870	0						
GCA_032810385.1_PDT001783486.1_genomic.fna	Salmonella_enterica	0.5219	89.999 KB	16	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		2	Col(pHAD28),ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAJI010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309718 SAMN35784513-rid18513803.denovo.001, whole genome shotgun sequence	120785..121222	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOAJI010000067.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309718 SAMN35784513-rid18513803.denovo.068, whole genome shotgun sequence	12506..13408	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABOAJI010000067.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309718 SAMN35784513-rid18513803.denovo.068, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABOAJI010000108.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309718 SAMN35784513-rid18513803.guided.041, whole genome shotgun sequence	33393..33830	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOAJI010000113.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309718 SAMN35784513-rid18513803.guided.091, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABOAJI010000114.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309718 SAMN35784513-rid18513803.guided.092, whole genome shotgun sequence	3505..4296	Spectinomycin, Streptomycin	JQ414041	sul2	100	816/816	ABOAJI010000064.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309718 SAMN35784513-rid18513803.denovo.065, whole genome shotgun sequence	13256..14071	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOAJI010000067.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309718 SAMN35784513-rid18513803.denovo.068, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul2	100	816/816	ABOAJI010000111.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309718 SAMN35784513-rid18513803.guided.081, whole genome shotgun sequence	4213..5028	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOAJI010000112.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309718 SAMN35784513-rid18513803.guided.084, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABOAJI010000064.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309718 SAMN35784513-rid18513803.denovo.065, whole genome shotgun sequence	16248..17447	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABOAJI010000094.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309718 SAMN35784513-rid18513803.denovo.102, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABOAJI010000111.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309718 SAMN35784513-rid18513803.guided.081, whole genome shotgun sequence	7205..8404	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABOAJI010000115.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309718 SAMN35784513-rid18513803.guided.099, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOAJI010000085.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309718 SAMN35784513-rid18513803.denovo.090, whole genome shotgun sequence	371..501	enterobacteriales	ColpVC	98.96	193 / 193	ABOAJI010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309718 SAMN35784513-rid18513803.denovo.101, whole genome shotgun sequence	805..997																																																avrA	ABOAJI010000024.1	63842..64711	99.885	870	0						
GCA_032810415.1_PDT001783483.1_genomic.fna	Salmonella_enterica	0.5211	90.742 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		3	Col440I,ColpVC,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAJL010000023.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309715 SAMN35784511-rid18513773.denovo.023, whole genome shotgun sequence	12525..12962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAJL010000140.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309715 SAMN35784511-rid18513773.guided.072, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOAJL010000076.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309715 SAMN35784511-rid18513773.denovo.079, whole genome shotgun sequence	1435..2580	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOAJL010000142.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309715 SAMN35784511-rid18513773.guided.078, whole genome shotgun sequence	1466..2611	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOAJL010000078.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309715 SAMN35784511-rid18513773.denovo.081, whole genome shotgun sequence	10342..11157	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOAJL010000143.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309715 SAMN35784511-rid18513773.guided.084, whole genome shotgun sequence	9931..10746	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOAJL010000078.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309715 SAMN35784511-rid18513773.denovo.081, whole genome shotgun sequence	13334..14533	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOAJL010000143.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309715 SAMN35784511-rid18513773.guided.084, whole genome shotgun sequence	12923..14122	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col440I	93.81	113 / 114	ABOAJL010000105.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309715 SAMN35784511-rid18513773.denovo.110, whole genome shotgun sequence	2528..2639	enterobacteriales	ColpVC	98.96	193 / 193	ABOAJL010000113.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309715 SAMN35784511-rid18513773.denovo.118, whole genome shotgun sequence	805..997		enterobacteriales	IncC	100	417 / 417	ABOAJL010000038.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309715 SAMN35784511-rid18513773.denovo.038, whole genome shotgun sequence	38349..38765																																									avrA	ABOAJL010000013.1	105597..106466	99.885	870	0						
GCA_032810445.1_PDT001783484.1_genomic.fna	Salmonella_enterica	0.5222	83.745 KB	21	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAJJ010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309716 SAMN35784512-rid18513783.denovo.003, whole genome shotgun sequence	133799..134236	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOAJJ010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309716 SAMN35784512-rid18513783.denovo.058, whole genome shotgun sequence	22834..23625	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAJJ010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309716 SAMN35784512-rid18513783.denovo.058, whole genome shotgun sequence	22834..23625	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOAJJ010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309716 SAMN35784512-rid18513783.guided.053, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOAJJ010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309716 SAMN35784512-rid18513783.guided.103, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAJJ010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309716 SAMN35784512-rid18513783.guided.103, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	99.2	876/876	ABOAJJ010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309716 SAMN35784512-rid18513783.denovo.100, whole genome shotgun sequence	1109..1977	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	99.2	876/876	ABOAJJ010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309716 SAMN35784512-rid18513783.guided.101, whole genome shotgun sequence	941..1809	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABOAJJ010000103.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309716 SAMN35784512-rid18513783.denovo.110, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABOAJJ010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309716 SAMN35784512-rid18513783.guided.109, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABOAJJ010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309716 SAMN35784512-rid18513783.denovo.058, whole genome shotgun sequence	21490..22329	Sulfamethoxazole	U12338	sul1	100	840/840	ABOAJJ010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309716 SAMN35784512-rid18513783.guided.103, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOAJJ010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309716 SAMN35784512-rid18513783.denovo.058, whole genome shotgun sequence	7774..8973	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOAJJ010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309716 SAMN35784512-rid18513783.guided.066, whole genome shotgun sequence	11507..12706	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOAJJ010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309716 SAMN35784512-rid18513783.denovo.084, whole genome shotgun sequence	6983..7542																																																						avrA	ABOAJJ010000005.1	124155..125024	99.655	870	0						
GCA_032810465.1_PDT001783482.1_genomic.fna	Salmonella_enterica	0.5223	74.147 KB	21	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAJK010000022.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309714 SAMN35784510-rid18513763.denovo.022, whole genome shotgun sequence	52477..52914	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOAJK010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309714 SAMN35784510-rid18513763.denovo.084, whole genome shotgun sequence	11982..12773	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAJK010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309714 SAMN35784510-rid18513763.denovo.084, whole genome shotgun sequence	11982..12773	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOAJK010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309714 SAMN35784510-rid18513763.guided.085, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAJK010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309714 SAMN35784510-rid18513763.guided.085, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOAJK010000154.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309714 SAMN35784510-rid18513763.guided.091, whole genome shotgun sequence	9243..9680	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABOAJK010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309714 SAMN35784510-rid18513763.denovo.084, whole genome shotgun sequence	10638..11477	Sulfamethoxazole	U12338	sul1	100	840/840	ABOAJK010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309714 SAMN35784510-rid18513763.guided.085, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOAJK010000104.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309714 SAMN35784510-rid18513763.denovo.109, whole genome shotgun sequence	1796..2995	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOAJK010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309714 SAMN35784510-rid18513763.guided.108, whole genome shotgun sequence	1817..3016	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOAJK010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309714 SAMN35784510-rid18513763.denovo.082, whole genome shotgun sequence	11623..12182																																																						avrA	ABOAJK010000003.1	93814..94683	99.655	870	0						
GCA_032810505.1_PDT001781263.1_genomic.fna	Salmonella_enterica	0.5213	490.179 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAJP010000001.1 Salmonella enterica strain PNUSAS356529 SAMN35778022-rid18423363.denovo.01, whole genome shotgun sequence	773638..774075	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAJP010000026.1 Salmonella enterica strain PNUSAS356529 SAMN35778022-rid18423363.guided.19, whole genome shotgun sequence	2717..3154	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAJP010000013.1 Salmonella enterica strain PNUSAS356529 SAMN35778022-rid18423363.denovo.13, whole genome shotgun sequence	40519..41161	enterobacteriales	IncFII(S)	100	262 / 262	ABOAJP010000016.1 Salmonella enterica strain PNUSAS356529 SAMN35778022-rid18423363.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABOAJP010000002.1	585474..586343	99.54	870	0						
GCA_032810525.1_PDT001781265.1_genomic.fna	Salmonella_enterica	0.5214	380.999 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOAJN010000001.1 Salmonella enterica strain PNUSAS356542 SAMN35778034-rid18423383.denovo.01, whole genome shotgun sequence	565204..565641	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOAJN010000030.1 Salmonella enterica strain PNUSAS356542 SAMN35778034-rid18423383.guided.22, whole genome shotgun sequence	1743..2180	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAJN010000002.1	563670..564539	99.77	870	0						
GCA_032810545.1_PDT001781264.1_genomic.fna	Salmonella_enterica	0.5206	478.724 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAJO010000001.1 Salmonella enterica strain PNUSAS356549 SAMN35778018-rid18423373.denovo.01, whole genome shotgun sequence	774538..774975	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAJO010000026.1 Salmonella enterica strain PNUSAS356549 SAMN35778018-rid18423373.guided.20, whole genome shotgun sequence	3719..4156	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAJO010000012.1 Salmonella enterica strain PNUSAS356549 SAMN35778018-rid18423373.denovo.12, whole genome shotgun sequence	40529..41171	enterobacteriales	IncFII(S)	100	262 / 262	ABOAJO010000017.1 Salmonella enterica strain PNUSAS356549 SAMN35778018-rid18423373.denovo.19, whole genome shotgun sequence	3394..3655		enterobacteriales	IncX1	98.93	374 / 374	ABOAJO010000013.1 Salmonella enterica strain PNUSAS356549 SAMN35778018-rid18423373.denovo.13, whole genome shotgun sequence	6868..7241																																									avrA	ABOAJO010000002.1	553684..554553	99.54	870	0						
GCA_032810565.1_PDT001781261.1_genomic.fna	Salmonella_enterica	0.5225	761.796 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncN2	aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOAJR010000001.1 Salmonella enterica strain PNUSAS356544 SAMN35778033-rid18423343.denovo.01, whole genome shotgun sequence	473685..474122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOAJR010000020.1 Salmonella enterica strain PNUSAS356544 SAMN35778033-rid18423343.guided.17, whole genome shotgun sequence	2681..3118	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncN2	93.92	477 / 477	ABOAJR010000014.1 Salmonella enterica strain PNUSAS356544 SAMN35778033-rid18423343.denovo.15, whole genome shotgun sequence	27880..28356																																																						avrA	ABOAJR010000006.1	93869..94738	99.77	870	0						
GCA_032810585.1_PDT001781262.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAJQ010000001.1 Salmonella enterica strain PNUSAS356552 SAMN35778031-rid18423353.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAJQ010000023.1 Salmonella enterica strain PNUSAS356552 SAMN35778031-rid18423353.guided.18, whole genome shotgun sequence	5558..5995	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAJQ010000012.1 Salmonella enterica strain PNUSAS356552 SAMN35778031-rid18423353.denovo.13, whole genome shotgun sequence	40549..41191	enterobacteriales	IncFII(S)	100	262 / 262	ABOAJQ010000015.1 Salmonella enterica strain PNUSAS356552 SAMN35778031-rid18423353.denovo.17, whole genome shotgun sequence	3396..3657																																																avrA	ABOAJQ010000002.1	553636..554505	99.54	870	0						
GCA_032810605.1_PDT001781260.1_genomic.fna	Salmonella_enterica	0.5198	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOAJS010000010.1 Salmonella enterica strain PNUSAS356546 SAMN35778030-rid18423333.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOAJS010000057.1 Salmonella enterica strain PNUSAS356546 SAMN35778030-rid18423333.guided.51, whole genome shotgun sequence	410..844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032810625.1_PDT001781259.1_genomic.fna	Salmonella_enterica	0.5204	196.474 KB	8	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAJU010000011.1 Salmonella enterica strain PNUSAS356534 SAMN35778027-rid18423323.denovo.11, whole genome shotgun sequence	52038..52475	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOAJU010000020.1 Salmonella enterica strain PNUSAS356534 SAMN35778027-rid18423323.denovo.20, whole genome shotgun sequence	14622..15424	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOAJU010000020.1 Salmonella enterica strain PNUSAS356534 SAMN35778027-rid18423323.denovo.20, whole genome shotgun sequence	14621..15424	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOAJU010000020.1 Salmonella enterica strain PNUSAS356534 SAMN35778027-rid18423323.denovo.20, whole genome shotgun sequence	14621..15424	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOAJU010000020.1 Salmonella enterica strain PNUSAS356534 SAMN35778027-rid18423323.denovo.20, whole genome shotgun sequence	14621..15424	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOAJU010000020.1 Salmonella enterica strain PNUSAS356534 SAMN35778027-rid18423323.denovo.20, whole genome shotgun sequence	15424..16164	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOAJU010000020.1 Salmonella enterica strain PNUSAS356534 SAMN35778027-rid18423323.denovo.20, whole genome shotgun sequence	15424..16164	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOAJU010000057.1 Salmonella enterica strain PNUSAS356534 SAMN35778027-rid18423323.guided.39, whole genome shotgun sequence	2617..3419	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOAJU010000057.1 Salmonella enterica strain PNUSAS356534 SAMN35778027-rid18423323.guided.39, whole genome shotgun sequence	2616..3419	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOAJU010000057.1 Salmonella enterica strain PNUSAS356534 SAMN35778027-rid18423323.guided.39, whole genome shotgun sequence	2616..3419	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOAJU010000057.1 Salmonella enterica strain PNUSAS356534 SAMN35778027-rid18423323.guided.39, whole genome shotgun sequence	2616..3419	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOAJU010000057.1 Salmonella enterica strain PNUSAS356534 SAMN35778027-rid18423323.guided.39, whole genome shotgun sequence	3419..4159	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOAJU010000057.1 Salmonella enterica strain PNUSAS356534 SAMN35778027-rid18423323.guided.39, whole genome shotgun sequence	3419..4159	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABOAJU010000058.1 Salmonella enterica strain PNUSAS356534 SAMN35778027-rid18423323.guided.42, whole genome shotgun sequence	2645..3082	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOAJU010000043.1 Salmonella enterica strain PNUSAS356534 SAMN35778027-rid18423323.denovo.47, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABOAJU010000020.1 Salmonella enterica strain PNUSAS356534 SAMN35778027-rid18423323.denovo.20, whole genome shotgun sequence	27193..27689																																																avrA	ABOAJU010000001.1	174562..175431	98.966	870	0						
GCA_032810645.1_PDT001781258.1_genomic.fna	Salmonella_enterica	0.5216	382.209 KB	3	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAJT010000001.1 Salmonella enterica strain PNUSAS356532 SAMN35778026-rid18422043.denovo.01, whole genome shotgun sequence	1244600..1245037	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAJT010000030.1 Salmonella enterica strain PNUSAS356532 SAMN35778026-rid18422043.guided.19, whole genome shotgun sequence	13388..13825	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOAJT010000022.1 Salmonella enterica strain PNUSAS356532 SAMN35778026-rid18422043.denovo.25, whole genome shotgun sequence	1604..1734																																																																	
GCA_032810665.1_PDT001781255.1_genomic.fna	Salmonella_enterica	0.5213	282.543 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAJX010000001.1 Salmonella enterica strain PNUSAS356535 SAMN35778028-rid18423303.denovo.01, whole genome shotgun sequence	569502..569939	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAJX010000039.1 Salmonella enterica strain PNUSAS356535 SAMN35778028-rid18423303.guided.30, whole genome shotgun sequence	18..455	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOAJX010000007.1	174581..175450	99.885	870	0						
GCA_032810685.1_PDT001781257.1_genomic.fna	Salmonella_enterica	0.5208	526.162 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOAJV010000001.1 Salmonella enterica strain PNUSAS356539 SAMN35778011-rid18423313.denovo.01, whole genome shotgun sequence	145169..145606	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOAJV010000025.1 Salmonella enterica strain PNUSAS356539 SAMN35778011-rid18423313.guided.18, whole genome shotgun sequence	2443..2880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAJV010000002.1	510965..511834	99.425	870	0						
GCA_032810705.1_PDT001781256.1_genomic.fna	Salmonella_enterica	0.5212	492.606 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAJY010000001.1 Salmonella enterica strain PNUSAS356533 SAMN35778021-rid18422033.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAJY010000025.1 Salmonella enterica strain PNUSAS356533 SAMN35778021-rid18422033.guided.18, whole genome shotgun sequence	9568..10005	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAJY010000013.1 Salmonella enterica strain PNUSAS356533 SAMN35778021-rid18422033.denovo.14, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOAJY010000016.1 Salmonella enterica strain PNUSAS356533 SAMN35778021-rid18422033.denovo.19, whole genome shotgun sequence	3374..3635																																																avrA	ABOAJY010000002.1	553642..554511	99.54	870	0						
GCA_032810725.1_PDT001781254.1_genomic.fna	Salmonella_enterica	0.5215	536.404 KB	3	aroC_118,dnaN_107,hemD_8,hisD_51,purE_2,sucA_117,thrA_16	319	7:z29:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_118	dnaN	100	100	dnaN_107	hemD	100	100	hemD_8	hisD	100	100	hisD_51	purE	100	100	purE_2	sucA	100	100	sucA_117	thrA	100	100	thrA_16	7	z29	-	Salmonella enterica subspecies enterica (subspecies I)	Tennessee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAJW010000001.1 Salmonella enterica strain PNUSAS356547 SAMN35778019-rid18423293.denovo.01, whole genome shotgun sequence	482293..482730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAJW010000029.1 Salmonella enterica strain PNUSAS356547 SAMN35778019-rid18423293.guided.20, whole genome shotgun sequence	15..452	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAJW010000008.1	144026..144895	99.655	870	0						
GCA_032810745.1_PDT001781253.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAJZ010000001.1 Salmonella enterica strain PNUSAS356553 SAMN35778015-rid18423283.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAJZ010000023.1 Salmonella enterica strain PNUSAS356553 SAMN35778015-rid18423283.guided.17, whole genome shotgun sequence	3809..4246	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAJZ010000011.1 Salmonella enterica strain PNUSAS356553 SAMN35778015-rid18423283.denovo.12, whole genome shotgun sequence	40542..41184	enterobacteriales	IncFII(S)	100	262 / 262	ABOAJZ010000014.1 Salmonella enterica strain PNUSAS356553 SAMN35778015-rid18423283.denovo.16, whole genome shotgun sequence	3393..3654																																																avrA	ABOAJZ010000002.1	553636..554505	99.54	870	0						
GCA_032810765.1_PDT001781251.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAKA010000001.1 Salmonella enterica strain PNUSAS356538 SAMN35778036-rid18423263.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAKA010000025.1 Salmonella enterica strain PNUSAS356538 SAMN35778036-rid18423263.guided.20, whole genome shotgun sequence	2909..3346	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAKA010000011.1 Salmonella enterica strain PNUSAS356538 SAMN35778036-rid18423263.denovo.11, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOAKA010000015.1 Salmonella enterica strain PNUSAS356538 SAMN35778036-rid18423263.denovo.16, whole genome shotgun sequence	3374..3635																																																avrA	ABOAKA010000002.1	553636..554505	99.54	870	0						
GCA_032810785.1_PDT001781252.1_genomic.fna	Salmonella_enterica	0.5214	492.602 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAKC010000001.1 Salmonella enterica strain PNUSAS356548 SAMN35778017-rid18423273.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAKC010000024.1 Salmonella enterica strain PNUSAS356548 SAMN35778017-rid18423273.guided.17, whole genome shotgun sequence	5904..6341	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAKC010000012.1 Salmonella enterica strain PNUSAS356548 SAMN35778017-rid18423273.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOAKC010000012.1 Salmonella enterica strain PNUSAS356548 SAMN35778017-rid18423273.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABOAKC010000002.1	553636..554505	99.54	870	0						
GCA_032810795.1_PDT001781247.1_genomic.fna	Salmonella_enterica	0.5215	443.7 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAKF010000001.1 Salmonella enterica strain PNUSAS356530 SAMN35778023-rid18423233.denovo.01, whole genome shotgun sequence	675955..676392	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAKF010000025.1 Salmonella enterica strain PNUSAS356530 SAMN35778023-rid18423233.guided.19, whole genome shotgun sequence	603..1040	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAKF010000008.1	212709..213578	99.195	870	0						
GCA_032810805.1_PDT001781250.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAKB010000001.1 Salmonella enterica strain PNUSAS356536 SAMN35778025-rid18423253.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAKB010000024.1 Salmonella enterica strain PNUSAS356536 SAMN35778025-rid18423253.guided.16, whole genome shotgun sequence	2638..3075	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAKB010000012.1 Salmonella enterica strain PNUSAS356536 SAMN35778025-rid18423253.denovo.12, whole genome shotgun sequence	40544..41186	enterobacteriales	IncFII(S)	100	262 / 262	ABOAKB010000015.1 Salmonella enterica strain PNUSAS356536 SAMN35778025-rid18423253.denovo.18, whole genome shotgun sequence	3404..3665																																																avrA	ABOAKB010000002.1	553636..554505	99.54	870	0						
GCA_032810845.1_PDT001781249.1_genomic.fna	Salmonella_enterica	0.5213	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAKD010000001.1 Salmonella enterica strain PNUSAS356575 SAMN35778016-rid18423243.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAKD010000023.1 Salmonella enterica strain PNUSAS356575 SAMN35778016-rid18423243.guided.20, whole genome shotgun sequence	1323..1760	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAKD010000012.1 Salmonella enterica strain PNUSAS356575 SAMN35778016-rid18423243.denovo.12, whole genome shotgun sequence	40519..41161	enterobacteriales	IncFII(S)	100	262 / 262	ABOAKD010000015.1 Salmonella enterica strain PNUSAS356575 SAMN35778016-rid18423243.denovo.16, whole genome shotgun sequence	3319..3580																																																avrA	ABOAKD010000002.1	553636..554505	99.54	870	0						
GCA_032810885.1_PDT001810433.1_genomic.fna	Salmonella_enterica	0.5197	113.716 KB	13	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABNXBH010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322972 SAMN36340909-rid18734323.denovo.012, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXBH010000059.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322972 SAMN36340909-rid18734323.denovo.061, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXBH010000059.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322972 SAMN36340909-rid18734323.denovo.061, whole genome shotgun sequence	7518..8321	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABNXBH010000105.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322972 SAMN36340909-rid18734323.guided.065, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABNXBH010000107.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322972 SAMN36340909-rid18734323.guided.085, whole genome shotgun sequence	842..1678	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABNXBH010000107.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322972 SAMN36340909-rid18734323.guided.085, whole genome shotgun sequence	39..842	Streptomycin	AF321551	tet(B)	100	1206/1206	ABNXBH010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322972 SAMN36340909-rid18734323.denovo.077, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABNXBH010000106.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322972 SAMN36340909-rid18734323.guided.076, whole genome shotgun sequence	3923..5128	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABNXBH010000078.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322972 SAMN36340909-rid18734323.denovo.082, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABNXBH010000059.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322972 SAMN36340909-rid18734323.denovo.061, whole genome shotgun sequence	5798..6059		enterobacteriales	IncFII	96.95	262 / 261	ABNXBH010000107.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322972 SAMN36340909-rid18734323.guided.085, whole genome shotgun sequence	2301..2562		enterobacteriales	IncX1	100	373 / 373	ABNXBH010000088.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322972 SAMN36340909-rid18734323.denovo.093, whole genome shotgun sequence	2732..3104																																		avrA	ABNXBH010000037.1	39484..40353	99.655	870	0						
GCA_032810925.1_PDT001781248.1_genomic.fna	Salmonella_enterica	0.5198	489.647 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAKG010000001.1 Salmonella enterica strain PNUSAS356528 SAMN35778032-rid18422023.denovo.01, whole genome shotgun sequence	736659..737096	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAKG010000025.1 Salmonella enterica strain PNUSAS356528 SAMN35778032-rid18422023.guided.18, whole genome shotgun sequence	2207..2644	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAKG010000012.1 Salmonella enterica strain PNUSAS356528 SAMN35778032-rid18422023.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOAKG010000012.1 Salmonella enterica strain PNUSAS356528 SAMN35778032-rid18422023.denovo.12, whole genome shotgun sequence	55607..55868		enterobacteriales	IncX1	98.67	377 / 377	ABOAKG010000013.1 Salmonella enterica strain PNUSAS356528 SAMN35778032-rid18422023.denovo.13, whole genome shotgun sequence	6390..6766																																									avrA	ABOAKG010000002.1	553108..553977	99.54	870	0						
GCA_032810945.1_PDT001781244.1_genomic.fna	Salmonella_enterica	0.5202	391.742 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAKH010000001.1 Salmonella enterica strain PNUSAS356543 SAMN35778013-rid18423213.denovo.01, whole genome shotgun sequence	563827..564264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAKH010000028.1 Salmonella enterica strain PNUSAS356543 SAMN35778013-rid18423213.guided.21, whole genome shotgun sequence	9655..10092	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAKH010000010.1	140470..141338	99.195	870	0						
GCA_032810955.1_PDT001781245.1_genomic.fna	Salmonella_enterica	0.5209	703.807 KB	3	aroC_5,dnaN_75,hemD_8,hisD_96,purE_39,sucA_146,thrA_97	443	35:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_75	hemD	100	100	hemD_8	hisD	100	100	hisD_96	purE	100	100	purE_39	sucA	100	100	sucA_146	thrA	100	100	thrA_97	35	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Monschaui		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAKK010000001.1 Salmonella enterica strain PNUSAS356527 SAMN35778035-rid18423223.denovo.01, whole genome shotgun sequence	664338..664775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAKK010000023.1 Salmonella enterica strain PNUSAS356527 SAMN35778035-rid18423223.guided.17, whole genome shotgun sequence	16..453	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032810985.1_PDT001781243.1_genomic.fna	Salmonella_enterica	0.5223	302.253 KB	5	aroC_5,dnaN_14,hemD_21,hisD_9,purE_6,sucA_12,thrA_17	49	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAKI010000001.1 Salmonella enterica strain PNUSAS356574 SAMN35778020-rid18423203.denovo.01, whole genome shotgun sequence	640244..640681	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAKI010000042.1 Salmonella enterica strain PNUSAS356574 SAMN35778020-rid18423203.guided.30, whole genome shotgun sequence	8400..8837	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOAKI010000003.1	140105..140974	99.54	870	0						
GCA_032811005.1_PDT001781242.1_genomic.fna	Salmonella_enterica	0.5211	489.854 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAKJ010000001.1 Salmonella enterica strain PNUSAS356545 SAMN35778029-rid18423193.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAKJ010000025.1 Salmonella enterica strain PNUSAS356545 SAMN35778029-rid18423193.guided.20, whole genome shotgun sequence	835..1272	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAKJ010000011.1 Salmonella enterica strain PNUSAS356545 SAMN35778029-rid18423193.denovo.12, whole genome shotgun sequence	40524..41166	enterobacteriales	IncFII(S)	100	262 / 262	ABOAKJ010000015.1 Salmonella enterica strain PNUSAS356545 SAMN35778029-rid18423193.denovo.16, whole genome shotgun sequence	3423..3684																																																avrA	ABOAKJ010000002.1	505310..506179	99.54	870	0						
GCA_032811025.1_PDT001781240.1_genomic.fna	Salmonella_enterica	0.5221	317.436 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOAKN010000003.1 Salmonella enterica strain PNUSAS356551 SAMN35778014-rid18423173.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOAKN010000037.1 Salmonella enterica strain PNUSAS356551 SAMN35778014-rid18423173.guided.29, whole genome shotgun sequence	7964..8401	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOAKN010000016.1 Salmonella enterica strain PNUSAS356551 SAMN35778014-rid18423173.denovo.16, whole genome shotgun sequence	44659..45301	enterobacteriales	IncFII(S)	100	262 / 262	ABOAKN010000016.1 Salmonella enterica strain PNUSAS356551 SAMN35778014-rid18423173.denovo.16, whole genome shotgun sequence	60386..60647																																																avrA	ABOAKN010000006.1	143228..144096	100	869	0						
GCA_032811045.1_PDT001781241.1_genomic.fna	Salmonella_enterica	0.5213	477.763 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	ABOAKL010000001.1 Salmonella enterica strain PNUSAS356541 SAMN35778009-rid18423183.denovo.01, whole genome shotgun sequence	787941..788378	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABOAKL010000026.1 Salmonella enterica strain PNUSAS356541 SAMN35778009-rid18423183.guided.20, whole genome shotgun sequence	2529..2966	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAKL010000013.1 Salmonella enterica strain PNUSAS356541 SAMN35778009-rid18423183.denovo.13, whole genome shotgun sequence	23003..23645	enterobacteriales	IncFII(S)	100	262 / 262	ABOAKL010000013.1 Salmonella enterica strain PNUSAS356541 SAMN35778009-rid18423183.denovo.13, whole genome shotgun sequence	29095..29356																																																avrA	ABOAKL010000002.1	553191..554060	99.54	870	0						
GCA_032811065.1_PDT001781239.1_genomic.fna	Salmonella_enterica	0.5206	707.807 KB	2	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAKM010000001.1 Salmonella enterica strain PNUSAS356531 SAMN35778012-rid18423163.denovo.01, whole genome shotgun sequence	624575..625012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAKM010000024.1 Salmonella enterica strain PNUSAS356531 SAMN35778012-rid18423163.guided.14, whole genome shotgun sequence	766..1203	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	99.35	154 / 154	ABOAKM010000012.1 Salmonella enterica strain PNUSAS356531 SAMN35778012-rid18423163.denovo.15, whole genome shotgun sequence	630..783																																																																	
GCA_032811085.1_PDT001781238.1_genomic.fna	Salmonella_enterica	0.52	560.46 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAKO010000001.1 Salmonella enterica strain PNUSAS356540 SAMN35778010-rid18423153.denovo.01, whole genome shotgun sequence	493338..493775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAKO010000030.1 Salmonella enterica strain PNUSAS356540 SAMN35778010-rid18423153.guided.21, whole genome shotgun sequence	3027..3464	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOAKO010000019.1 Salmonella enterica strain PNUSAS356540 SAMN35778010-rid18423153.denovo.22, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOAKO010000031.1 Salmonella enterica strain PNUSAS356540 SAMN35778010-rid18423153.guided.23, whole genome shotgun sequence	739..1383	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOAKO010000019.1 Salmonella enterica strain PNUSAS356540 SAMN35778010-rid18423153.denovo.22, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOAKO010000020.1 Salmonella enterica strain PNUSAS356540 SAMN35778010-rid18423153.denovo.24, whole genome shotgun sequence	547..675		enterobacteriales	Col(pHAD28)	100	131 / 131	ABOAKO010000031.1 Salmonella enterica strain PNUSAS356540 SAMN35778010-rid18423153.guided.23, whole genome shotgun sequence	83..213																																									avrA	ABOAKO010000004.1	181814..182683	98.966	870	0						
GCA_032811125.1_PDT001781223.1_genomic.fna	Salmonella_enterica	0.5209	476.57 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAKS010000001.1 Salmonella enterica strain PNUSAS356586 SAMN35775733-rid18423013.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAKS010000026.1 Salmonella enterica strain PNUSAS356586 SAMN35775733-rid18423013.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAKS010000014.1 Salmonella enterica strain PNUSAS356586 SAMN35775733-rid18423013.denovo.16, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOAKS010000017.1 Salmonella enterica strain PNUSAS356586 SAMN35775733-rid18423013.denovo.20, whole genome shotgun sequence	3404..3665																																																avrA	ABOAKS010000002.1	553654..554523	99.54	870	0						
GCA_032811165.1_PDT001781231.1_genomic.fna	Salmonella_enterica	0.5219	353.358 KB	5	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_19,thrA_12	582	8:z4,z23:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	z4,z23	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Chailey		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAKR010000001.1 Salmonella enterica strain PNUSAS356581 SAMN35775732-rid18423093.denovo.01, whole genome shotgun sequence	487649..488086	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAKR010000028.1 Salmonella enterica strain PNUSAS356581 SAMN35775732-rid18423093.guided.13, whole genome shotgun sequence	42411..42848	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAKR010000008.1	39546..40414	99.425	870	0						
GCA_032811185.1_PDT001781222.1_genomic.fna	Salmonella_enterica	0.5207	271.789 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		1	ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAKT010000001.1 Salmonella enterica strain PNUSAS356580 SAMN35775728-rid18423003.denovo.01, whole genome shotgun sequence	570090..570527	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAKT010000052.1 Salmonella enterica strain PNUSAS356580 SAMN35775728-rid18423003.guided.36, whole genome shotgun sequence	11795..12232	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOAKT010000033.1 Salmonella enterica strain PNUSAS356580 SAMN35775728-rid18423003.denovo.34, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOAKT010000053.1 Salmonella enterica strain PNUSAS356580 SAMN35775728-rid18423003.guided.37, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	ColRNAI	90.08	131 / 130	ABOAKT010000038.1 Salmonella enterica strain PNUSAS356580 SAMN35775728-rid18423003.denovo.42, whole genome shotgun sequence	3981..4111																																																						avrA	ABOAKT010000002.1	434652..435521	99.885	870	0						
GCA_032811205.1_PDT001781221.1_genomic.fna	Salmonella_enterica	0.5207	430.189 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAKU010000001.1 Salmonella enterica strain PNUSAS356585 SAMN35775730-rid18422993.denovo.01, whole genome shotgun sequence	477352..477789	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAKU010000027.1 Salmonella enterica strain PNUSAS356585 SAMN35775730-rid18422993.guided.21, whole genome shotgun sequence	42400..42837	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOAKU010000017.1 Salmonella enterica strain PNUSAS356585 SAMN35775730-rid18422993.denovo.18, whole genome shotgun sequence	2740..3273																																																						avrA	ABOAKU010000009.1	150695..151565	99.196	871	0						
GCA_032811225.1_PDT001781215.1_genomic.fna	Salmonella_enterica	0.5207	385.764 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOAKX010000002.1 Salmonella enterica strain PNUSAS356583 SAMN35775729-rid18422933.denovo.02, whole genome shotgun sequence	669650..670087	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOAKX010000028.1 Salmonella enterica strain PNUSAS356583 SAMN35775729-rid18422933.guided.12, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032811245.1_PDT001781220.1_genomic.fna	Salmonella_enterica	0.5219	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAKV010000001.1 Salmonella enterica strain PNUSAS356576 SAMN35775735-rid18422983.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAKV010000024.1 Salmonella enterica strain PNUSAS356576 SAMN35775735-rid18422983.guided.11, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABOAKV010000017.1 Salmonella enterica strain PNUSAS356576 SAMN35775735-rid18422983.denovo.20, whole genome shotgun sequence	3981..4111																																																						avrA	ABOAKV010000002.1	129881..130750	98.966	870	0						
GCA_032811265.1_PDT001781219.1_genomic.fna	Salmonella_enterica	0.5214	532.15 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOAKW010000010.1 Salmonella enterica strain PNUSAS356582 SAMN35775734-rid18422973.denovo.10, whole genome shotgun sequence	70822..71259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOAKW010000027.1 Salmonella enterica strain PNUSAS356582 SAMN35775734-rid18422973.guided.16, whole genome shotgun sequence	2106..2543	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAKW010000002.1	94228..95097	98.966	870	0						
GCA_032811285.1_PDT001781214.1_genomic.fna	Salmonella_enterica	0.521	207.445 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAKY010000001.1 Salmonella enterica strain PNUSAS356577 SAMN35775726-rid18422923.denovo.01, whole genome shotgun sequence	337830..338267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAKY010000050.1 Salmonella enterica strain PNUSAS356577 SAMN35775726-rid18422923.guided.20, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOAKY010000019.1 Salmonella enterica strain PNUSAS356577 SAMN35775726-rid18422923.denovo.19, whole genome shotgun sequence	70671..70812																																																						avrA	ABOAKY010000005.1	94139..95007	99.77	870	0						
GCA_032811325.1_PDT001781213.1_genomic.fna	Salmonella_enterica	0.5208	398.295 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_58,thrA_4	412	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC,ColpVC	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_58	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOALA010000002.1 Salmonella enterica strain PNUSAS356579 SAMN35775727-rid18422913.denovo.02, whole genome shotgun sequence	625453..625890	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOALA010000026.1 Salmonella enterica strain PNUSAS356579 SAMN35775727-rid18422913.guided.13, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	96.89	193 / 193	ABOALA010000021.1 Salmonella enterica strain PNUSAS356579 SAMN35775727-rid18422913.denovo.24, whole genome shotgun sequence	1524..1716	enterobacteriales	ColpVC	98.96	193 / 193	ABOALA010000022.1 Salmonella enterica strain PNUSAS356579 SAMN35775727-rid18422913.denovo.25, whole genome shotgun sequence	805..997																																																avrA	ABOALA010000005.1	94142..95011	99.54	870	0						
GCA_032811405.1_PDT001781230.1_genomic.fna	Salmonella_enterica	0.5205	236.371 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aadA24,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA24,aadA24,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,floR,floR,qnrB19,qnrB19,sul2,sul2,sul2,sul2,sul2,tet(M),tet(B),tet(M),tet(M),tet(B),dfrA12,dfrA12,dfrA12	0		4	Col(pHAD28),Col(pHAD28),IncFIB(AP001918),IncFIC(FII),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOALE010000001.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.denovo.01, whole genome shotgun sequence	482848..483285	Amikacin, Tobramycin	NC_003197	aadA24	99.36	780/780	ABOALE010000044.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.denovo.47, whole genome shotgun sequence	4690..5469	Spectinomycin, Streptomycin	DQ677333	aph(6)-Id	100	837/837	ABOALE010000051.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.denovo.57, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOALE010000051.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.denovo.57, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOALE010000080.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.43, whole genome shotgun sequence	4889..5326	Amikacin, Tobramycin	NC_003197	aadA24	99.36	780/780	ABOALE010000081.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.49, whole genome shotgun sequence	4731..5510	Spectinomycin, Streptomycin	DQ677333	aadA24	99.36	780/780	ABOALE010000082.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.50, whole genome shotgun sequence	4731..5510	Spectinomycin, Streptomycin	DQ677333	aph(6)-Id	100	837/837	ABOALE010000086.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.75, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOALE010000086.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.75, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOALE010000065.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.denovo.73, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOALE010000087.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.76, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.11	1214/1215	ABOALE010000056.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.denovo.62, whole genome shotgun sequence	1097..2310	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABOALE010000084.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.66, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABOALE010000060.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.denovo.68, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOALE010000085.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.67, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABOALE010000051.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.denovo.57, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOALE010000088.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.84, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOALE010000089.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.85, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABOALE010000090.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.86, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOALE010000091.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.87, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(M)	96.15	1920/1920	ABOALE010000044.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.denovo.47, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOALE010000045.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.denovo.48, whole genome shotgun sequence	6921..8126	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOALE010000081.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.49, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.09	1920/1920	ABOALE010000082.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.50, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOALE010000083.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.54, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABOALE010000044.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.denovo.47, whole genome shotgun sequence	5889..6386	Trimethoprim	AM040708	dfrA12	100	498/498	ABOALE010000081.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.49, whole genome shotgun sequence	5930..6427	Trimethoprim	AM040708	dfrA12	100	498/498	ABOALE010000082.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.50, whole genome shotgun sequence	5930..6427	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	100	131 / 131	ABOALE010000060.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.denovo.68, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOALE010000085.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.guided.67, whole genome shotgun sequence	2044..2174		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOALE010000049.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.denovo.55, whole genome shotgun sequence	2185..2866		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOALE010000033.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.denovo.34, whole genome shotgun sequence	35171..35667		enterobacteriales	IncX1	98.66	374 / 374	ABOALE010000032.1 Salmonella enterica strain PNUSAS356578 SAMN35775731-rid18423083.denovo.32, whole genome shotgun sequence	6955..7328																											avrA	ABOALE010000002.1	77578..78447	99.885	870	0						
GCA_032811425.1_PDT001781212.1_genomic.fna	Salmonella_enterica	0.5218	496.516 KB	3	aroC_12,dnaN_2,hemD_557*,hisD_14,purE_11,sucA_14,thrA_16	Unknown	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	99.7685185185185	100	hemD_557*	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOALH010000001.1 Salmonella enterica strain PNUSAS356584 SAMN35775725-rid18422903.denovo.01, whole genome shotgun sequence	833425..833862	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOALH010000023.1 Salmonella enterica strain PNUSAS356584 SAMN35775725-rid18422903.guided.11, whole genome shotgun sequence	26654..27091	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOALH010000002.1	129893..130762	98.966	870	0						
GCA_032811485.1_PDT001781210.1_genomic.fna	Salmonella_enterica	0.5209	400.257 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOALJ010000001.1 Salmonella enterica strain PNUSAS356314 SAMN35775127-rid18422893.denovo.01, whole genome shotgun sequence	485273..485710	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOALJ010000023.1 Salmonella enterica strain PNUSAS356314 SAMN35775127-rid18422893.guided.20, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOALJ010000015.1 Salmonella enterica strain PNUSAS356314 SAMN35775127-rid18422893.denovo.15, whole genome shotgun sequence	34958..35491																																																						avrA	ABOALJ010000002.1	544613..545481	99.425	870	0						
GCA_032811505.1_PDT001781211.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOALI010000001.1 Salmonella enterica strain PNUSAS356321 SAMN35775076-rid18421993.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOALI010000026.1 Salmonella enterica strain PNUSAS356321 SAMN35775076-rid18421993.guided.14, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOALI010000016.1 Salmonella enterica strain PNUSAS356321 SAMN35775076-rid18421993.denovo.19, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABOALI010000017.1 Salmonella enterica strain PNUSAS356321 SAMN35775076-rid18421993.denovo.20, whole genome shotgun sequence	3322..3583																																																avrA	ABOALI010000002.1	553636..554505	99.54	870	0						
GCA_032811525.1_PDT001781208.1_genomic.fna	Salmonella_enterica	0.5203	380.684 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOALK010000001.1 Salmonella enterica strain PNUSAS356599 SAMN35775161-rid18422873.denovo.01, whole genome shotgun sequence	216757..217194	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOALK010000034.1 Salmonella enterica strain PNUSAS356599 SAMN35775161-rid18422873.guided.23, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABOALK010000017.1 Salmonella enterica strain PNUSAS356599 SAMN35775161-rid18422873.denovo.18, whole genome shotgun sequence	6783..7044																																																																	
GCA_032811545.1_PDT001781207.1_genomic.fna	Salmonella_enterica	0.5198	335.104 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOALL010000001.1 Salmonella enterica strain PNUSAS356313 SAMN35775132-rid18422863.denovo.01, whole genome shotgun sequence	477888..478325	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOALL010000036.1 Salmonella enterica strain PNUSAS356313 SAMN35775132-rid18422863.guided.18, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197	blaCMY-2	99.91	1146/1146	ABOALL010000013.1 Salmonella enterica strain PNUSAS356313 SAMN35775132-rid18422863.denovo.13, whole genome shotgun sequence	5738..6883	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	99.91	1146/1146	ABOALL010000037.1 Salmonella enterica strain PNUSAS356313 SAMN35775132-rid18422863.guided.19, whole genome shotgun sequence	5757..6902	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOALL010000013.1 Salmonella enterica strain PNUSAS356313 SAMN35775132-rid18422863.denovo.13, whole genome shotgun sequence	77156..77297																																																						avrA	ABOALL010000002.1	145182..146051	99.31	870	0						
GCA_032811565.1_PDT001781206.1_genomic.fna	Salmonella_enterica	0.5207	337.61 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOALM010000001.1 Salmonella enterica strain PNUSAS356324 SAMN35775134-rid18422853.denovo.01, whole genome shotgun sequence	462162..462599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOALM010000038.1 Salmonella enterica strain PNUSAS356324 SAMN35775134-rid18422853.guided.26, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOALM010000002.1	551339..552208	99.195	870	0						
GCA_032811585.1_PDT001781205.1_genomic.fna	Salmonella_enterica	0.516	315.829 KB	7	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	44:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pKPC-CAV1193	aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	44	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 44:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABOALN010000010.1 Salmonella enterica strain PNUSAS356319 SAMN35775131-rid18422843.denovo.10, whole genome shotgun sequence	4992..5429	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABOALN010000046.1 Salmonella enterica strain PNUSAS356319 SAMN35775131-rid18422843.guided.31, whole genome shotgun sequence	1419..1856	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1193	98.2	612 / 612	ABOALN010000027.1 Salmonella enterica strain PNUSAS356319 SAMN35775131-rid18422843.denovo.30, whole genome shotgun sequence	173..784																																																																	
GCA_032811605.1_PDT001781203.1_genomic.fna	Salmonella_enterica	0.5221	332.888 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOALP010000001.1 Salmonella enterica strain PNUSAS356598 SAMN35775158-rid18422823.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOALP010000037.1 Salmonella enterica strain PNUSAS356598 SAMN35775158-rid18422823.guided.27, whole genome shotgun sequence	1604..2041	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOALP010000002.1	149828..150697	99.655	870	0						
GCA_032811645.1_PDT001781202.1_genomic.fna	Salmonella_enterica	0.5227	337.595 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOALQ010000001.1 Salmonella enterica strain PNUSAS356323 SAMN35775124-rid18422813.denovo.01, whole genome shotgun sequence	460175..460612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOALQ010000034.1 Salmonella enterica strain PNUSAS356323 SAMN35775124-rid18422813.guided.20, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOALQ010000002.1	150333..151202	99.655	870	0						
GCA_032811665.1_PDT001781201.1_genomic.fna	Salmonella_enterica	0.5193	229.855 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,fosA7,fosA7,floR,floR,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	1	IncC	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOALR010000001.1 Salmonella enterica strain PNUSAS356318 SAMN35775130-rid18421983.denovo.01, whole genome shotgun sequence	494940..495377	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOALR010000030.1 Salmonella enterica strain PNUSAS356318 SAMN35775130-rid18421983.denovo.33, whole genome shotgun sequence	2586..3422	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOALR010000030.1 Salmonella enterica strain PNUSAS356318 SAMN35775130-rid18421983.denovo.33, whole genome shotgun sequence	3422..4225	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOALR010000045.1 Salmonella enterica strain PNUSAS356318 SAMN35775130-rid18421983.guided.27, whole genome shotgun sequence	20547..20984	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOALR010000048.1 Salmonella enterica strain PNUSAS356318 SAMN35775130-rid18421983.guided.40, whole genome shotgun sequence	965..1801	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOALR010000048.1 Salmonella enterica strain PNUSAS356318 SAMN35775130-rid18421983.guided.40, whole genome shotgun sequence	162..965	Streptomycin	AF321551	aph(3'')-Ib	100	804/804	ABOALR010000050.1 Salmonella enterica strain PNUSAS356318 SAMN35775130-rid18421983.guided.42, whole genome shotgun sequence	2428..3231	Streptomycin	AF321551	fosA7	97.16	423/423	ABOALR010000004.1 Salmonella enterica strain PNUSAS356318 SAMN35775130-rid18421983.denovo.04, whole genome shotgun sequence	268060..268482	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOALR010000046.1 Salmonella enterica strain PNUSAS356318 SAMN35775130-rid18421983.guided.32, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014	floR	98.19	1214/1215	ABOALR010000034.1 Salmonella enterica strain PNUSAS356318 SAMN35775130-rid18421983.denovo.38, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOALR010000049.1 Salmonella enterica strain PNUSAS356318 SAMN35775130-rid18421983.guided.41, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOALR010000030.1 Salmonella enterica strain PNUSAS356318 SAMN35775130-rid18421983.denovo.33, whole genome shotgun sequence	4286..5101	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOALR010000050.1 Salmonella enterica strain PNUSAS356318 SAMN35775130-rid18421983.guided.42, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOALR010000030.1 Salmonella enterica strain PNUSAS356318 SAMN35775130-rid18421983.denovo.33, whole genome shotgun sequence	51..1325	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOALR010000048.1 Salmonella enterica strain PNUSAS356318 SAMN35775130-rid18421983.guided.40, whole genome shotgun sequence	3062..4336	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncC	100	417 / 417	ABOALR010000022.1 Salmonella enterica strain PNUSAS356318 SAMN35775130-rid18421983.denovo.22, whole genome shotgun sequence	17493..17909																																																						avrA	ABOALR010000003.1	122302..123171	99.195	870	0						
GCA_032811705.1_PDT001781197.1_genomic.fna	Salmonella_enterica	0.5225	526.344 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOALV010000001.1 Salmonella enterica strain PNUSAS356322 SAMN35775125-rid18422773.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOALV010000032.1 Salmonella enterica strain PNUSAS356322 SAMN35775125-rid18422773.guided.16, whole genome shotgun sequence	24998..25435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOALV010000003.1	149923..150792	99.655	870	0						
GCA_032811745.1_PDT001781196.1_genomic.fna	Salmonella_enterica	0.5192	227.482 KB	6	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOALW010000003.1 Salmonella enterica strain PNUSAS356597 SAMN35775159-rid18422763.denovo.03, whole genome shotgun sequence	370303..370740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOALW010000042.1 Salmonella enterica strain PNUSAS356597 SAMN35775159-rid18422763.guided.33, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032811765.1_PDT001781200.1_genomic.fna	Salmonella_enterica	0.5213	374.185 KB	4	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2*,sucA_2,thrA_6	435*	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	99.749373433584	100	purE_2*	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOALT010000001.1 Salmonella enterica strain PNUSAS356317 SAMN35775123-rid18422803.denovo.01, whole genome shotgun sequence	755846..756283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOALT010000025.1 Salmonella enterica strain PNUSAS356317 SAMN35775123-rid18422803.guided.13, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOALT010000014.1 Salmonella enterica strain PNUSAS356317 SAMN35775123-rid18422803.denovo.15, whole genome shotgun sequence	34957..35490																																																						avrA	ABOALT010000002.1	508953..509822	99.54	870	0						
GCA_032811785.1_PDT001781198.1_genomic.fna	Salmonella_enterica	0.5215	282.835 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOALU010000002.1 Salmonella enterica strain PNUSAS356604 SAMN35775157-rid18422783.denovo.02, whole genome shotgun sequence	20725..21162	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOALU010000036.1 Salmonella enterica strain PNUSAS356604 SAMN35775157-rid18422783.denovo.39, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOALU010000036.1 Salmonella enterica strain PNUSAS356604 SAMN35775157-rid18422783.denovo.39, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOALU010000051.1 Salmonella enterica strain PNUSAS356604 SAMN35775157-rid18422783.guided.23, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOALU010000054.1 Salmonella enterica strain PNUSAS356604 SAMN35775157-rid18422783.guided.40, whole genome shotgun sequence	3453..4289	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOALU010000054.1 Salmonella enterica strain PNUSAS356604 SAMN35775157-rid18422783.guided.40, whole genome shotgun sequence	2650..3453	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOALU010000041.1 Salmonella enterica strain PNUSAS356604 SAMN35775157-rid18422783.denovo.47, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOALU010000056.1 Salmonella enterica strain PNUSAS356604 SAMN35775157-rid18422783.guided.46, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOALU010000036.1 Salmonella enterica strain PNUSAS356604 SAMN35775157-rid18422783.denovo.39, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOALU010000054.1 Salmonella enterica strain PNUSAS356604 SAMN35775157-rid18422783.guided.40, whole genome shotgun sequence	1774..2589	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOALU010000030.1 Salmonella enterica strain PNUSAS356604 SAMN35775157-rid18422783.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOALU010000055.1 Salmonella enterica strain PNUSAS356604 SAMN35775157-rid18422783.guided.41, whole genome shotgun sequence	1956..3161	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABOALU010000001.1	589506..590375	99.885	870	0						
GCA_032811805.1_PDT001781193.1_genomic.fna	Salmonella_enterica	0.5225	405.025 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOALZ010000001.1 Salmonella enterica strain PNUSAS356315 SAMN35775128-rid18422733.denovo.01, whole genome shotgun sequence	667231..667668	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOALZ010000026.1 Salmonella enterica strain PNUSAS356315 SAMN35775128-rid18422733.guided.18, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOALZ010000003.1	508581..509450	99.31	870	0						
GCA_032811815.1_PDT001781195.1_genomic.fna	Salmonella_enterica	0.519	227.482 KB	6	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOALX010000003.1 Salmonella enterica strain PNUSAS356596 SAMN35775160-rid18422753.denovo.03, whole genome shotgun sequence	370303..370740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOALX010000048.1 Salmonella enterica strain PNUSAS356596 SAMN35775160-rid18422753.guided.28, whole genome shotgun sequence	20622..21059	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032811845.1_PDT001781194.1_genomic.fna	Salmonella_enterica	0.5212	278.185 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOALY010000003.1 Salmonella enterica strain PNUSAS356316 SAMN35775133-rid18422743.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOALY010000046.1 Salmonella enterica strain PNUSAS356316 SAMN35775133-rid18422743.guided.27, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOALY010000001.1	446766..447634	100	869	0						
GCA_032811865.1_PDT001781190.1_genomic.fna	Salmonella_enterica	0.5215	229.312 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAMC010000001.1 Salmonella enterica strain PNUSAS356320 SAMN35775129-rid18422713.denovo.01, whole genome shotgun sequence	380041..380478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAMC010000040.1 Salmonella enterica strain PNUSAS356320 SAMN35775129-rid18422713.guided.24, whole genome shotgun sequence	20567..21004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOAMC010000002.1	218734..219602	99.77	870	0						
GCA_032811905.1_PDT001781188.1_genomic.fna	Salmonella_enterica	0.5212	426.775 KB	4	aroC_15,dnaN_126,hemD_101,hisD_88,purE_8,sucA_19,thrA_18	446	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_126	hemD	100	100	hemD_101	hisD	100	100	hisD_88	purE	100	100	purE_8	sucA	100	100	sucA_19	thrA	100	100	thrA_18	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOAMD010000001.1 Salmonella enterica strain FDA1225647-C001-002 SAMN35777891-rid18422693.denovo.01, whole genome shotgun sequence	717271..717708	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOAMD010000031.1 Salmonella enterica strain FDA1225647-C001-002 SAMN35777891-rid18422693.guided.19, whole genome shotgun sequence	17511..17948	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOAMD010000013.1	39582..40451	99.77	870	0						
GCA_032811945.1_PDT001781186.1_genomic.fna	Salmonella_enterica	0.5228	388.119 KB	5	aroC_99,dnaN_175,hemD_58,hisD_11,purE_111,sucA_9,thrA_2	639	3,10:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_99	dnaN	100	100	dnaN_175	hemD	100	100	hemD_58	hisD	100	100	hisD_11	purE	100	100	purE_111	sucA	100	100	sucA_9	thrA	100	100	thrA_2	3,10	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Orion		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOAMF010000001.1 Salmonella enterica strain FDA1227011-C001-002 SAMN35777894-rid18422673.denovo.01, whole genome shotgun sequence	710032..710469	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOAMF010000038.1 Salmonella enterica strain FDA1227011-C001-002 SAMN35777894-rid18422673.guided.22, whole genome shotgun sequence	13444..13881	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOAMF010000025.1 Salmonella enterica strain FDA1227011-C001-002 SAMN35777894-rid18422673.denovo.28, whole genome shotgun sequence	22..152	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABOAMF010000027.1 Salmonella enterica strain FDA1227011-C001-002 SAMN35777894-rid18422673.denovo.30, whole genome shotgun sequence	1398..1528																																																											
GCA_032811985.1_PDT001781183.1_genomic.fna	Salmonella_enterica	0.521	222.523 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	5	aac(6')-Iaa,aadA2,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aadA2,aph(6)-Id,aph(6)-Id,tet(B),tet(B),dfrA12,dfrA12,dfrA12,dfrA12,dfrA12,dfrA12	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAMH010000001.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.denovo.01, whole genome shotgun sequence	121883..122320	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOAMH010000048.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.denovo.53, whole genome shotgun sequence	243..1034	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	772/837	ABOAMH010000049.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.denovo.55, whole genome shotgun sequence	1..772	Streptomycin	AF024602	aph(6)-Id	100	772/837	ABOAMH010000049.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.denovo.55, whole genome shotgun sequence	1..772	Streptomycin	M28829	aac(6')-Iaa	100	438/438	ABOAMH010000065.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.guided.36, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOAMH010000068.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.guided.52, whole genome shotgun sequence	875..1666	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	773/837	ABOAMH010000069.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.guided.54, whole genome shotgun sequence	671..1443	Streptomycin	AF024602	aph(6)-Id	100	773/837	ABOAMH010000069.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.guided.54, whole genome shotgun sequence	671..1443	Streptomycin	M28829	tet(B)	100	1206/1206	ABOAMH010000040.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.denovo.43, whole genome shotgun sequence	68..1273	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOAMH010000067.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.guided.47, whole genome shotgun sequence	2495..3700	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	426/498	ABOAMH010000048.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.denovo.53, whole genome shotgun sequence	1442..1867	Trimethoprim	AM040708	dfrA12	100	426/498	ABOAMH010000048.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.denovo.53, whole genome shotgun sequence	1442..1867	Trimethoprim	FR875302	dfrA12	100	426/498	ABOAMH010000048.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.denovo.53, whole genome shotgun sequence	1442..1867	Trimethoprim	EU650399	dfrA12	100	429/498	ABOAMH010000068.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.guided.52, whole genome shotgun sequence	39..467	Trimethoprim	AM040708	dfrA12	100	429/498	ABOAMH010000068.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.guided.52, whole genome shotgun sequence	39..467	Trimethoprim	FR875302	dfrA12	100	429/498	ABOAMH010000068.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.guided.52, whole genome shotgun sequence	39..467	Trimethoprim	EU650399																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	IncFIB(S)	100	643 / 643	ABOAMH010000030.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.denovo.31, whole genome shotgun sequence	20273..20915	enterobacteriales	IncFII(S)	100	262 / 262	ABOAMH010000030.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.denovo.31, whole genome shotgun sequence	4927..5188		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOAMH010000019.1 Salmonella enterica strain PNUSAS356325 SAMN35775126-rid18422643.denovo.19, whole genome shotgun sequence	68714..68855																																									avrA	ABOAMH010000004.1	143228..144097	99.885	870	0						
GCA_032812025.1_PDT001781181.1_genomic.fna	Salmonella_enterica	0.5224	248.922 KB	6	aroC_2,dnaN_2,hemD_43,hisD_7,purE_162,sucA_9,thrA_17	2026	7:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_43	hisD	100	100	hisD_7	purE	100	100	purE_162	sucA	100	100	sucA_9	thrA	100	100	thrA_17	7	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Irumu		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOAMJ010000001.1 Salmonella enterica strain PNUSAS356476 SAMN35774983-rid18421963.denovo.01, whole genome shotgun sequence	600093..600530	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOAMJ010000060.1 Salmonella enterica strain PNUSAS356476 SAMN35774983-rid18421963.guided.26, whole genome shotgun sequence	50..487	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABOAMJ010000021.1 Salmonella enterica strain PNUSAS356476 SAMN35774983-rid18421963.denovo.21, whole genome shotgun sequence	14915..15557																																																						avrA	ABOAMJ010000010.1	147974..148843	99.77	870	0						
GCA_032812045.1_PDT001781180.1_genomic.fna	Salmonella_enterica	0.5229	75.278 KB	22	aroC_99,dnaN_175,hemD_58,hisD_11,purE_111,sucA_9,thrA_2	639	-:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_99	dnaN	100	100	dnaN_175	hemD	100	100	hemD_58	hisD	100	100	hisD_11	purE	100	100	purE_111	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:y:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOAMI010000022.1 Salmonella enterica subsp. enterica serovar Orion strain FSIS22313265 SAMN35777143-rid18422623.denovo.022, whole genome shotgun sequence	12402..12839	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOAMI010000135.1 Salmonella enterica subsp. enterica serovar Orion strain FSIS22313265 SAMN35777143-rid18422623.guided.075, whole genome shotgun sequence	8988..9425	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABOAMI010000105.1 Salmonella enterica subsp. enterica serovar Orion strain FSIS22313265 SAMN35777143-rid18422623.denovo.108, whole genome shotgun sequence	666..796	enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOAMI010000103.1 Salmonella enterica subsp. enterica serovar Orion strain FSIS22313265 SAMN35777143-rid18422623.denovo.106, whole genome shotgun sequence	249..390																																																											
GCA_032812065.1_PDT001781179.1_genomic.fna	Salmonella_enterica	0.5218	68.37 KB	26	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOAMK010000027.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313264 SAMN35777142-rid18422613.denovo.027, whole genome shotgun sequence	12432..12869	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOAMK010000155.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313264 SAMN35777142-rid18422613.guided.072, whole genome shotgun sequence	12427..12864	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOAMK010000062.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313264 SAMN35777142-rid18422613.denovo.062, whole genome shotgun sequence	14271..15416	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOAMK010000154.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313264 SAMN35777142-rid18422613.guided.071, whole genome shotgun sequence	10809..11954	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOAMK010000105.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313264 SAMN35777142-rid18422613.denovo.109, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOAMK010000157.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313264 SAMN35777142-rid18422613.guided.112, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOAMK010000105.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313264 SAMN35777142-rid18422613.denovo.109, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOAMK010000157.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313264 SAMN35777142-rid18422613.guided.112, whole genome shotgun sequence	4544..5743	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABOAMK010000111.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313264 SAMN35777142-rid18422613.denovo.116, whole genome shotgun sequence	1326..1445	enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOAMK010000114.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313264 SAMN35777142-rid18422613.denovo.119, whole genome shotgun sequence	371..501		enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOAMK010000115.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313264 SAMN35777142-rid18422613.denovo.120, whole genome shotgun sequence	3134..3264		enterobacteriales	IncC	100	417 / 417	ABOAMK010000044.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313264 SAMN35777142-rid18422613.denovo.044, whole genome shotgun sequence	38349..38765																																		avrA	ABOAMK010000007.1	102351..103220	99.885	870	0						
GCA_032812085.1_PDT001781178.1_genomic.fna	Salmonella_enterica	0.5227	65.933 KB	24	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAML010000008.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313260 SAMN35777120-rid18422603.denovo.008, whole genome shotgun sequence	17727..18164	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAML010000146.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313260 SAMN35777120-rid18422603.guided.059, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAML010000090.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313260 SAMN35777120-rid18422603.denovo.092, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABOAML010000101.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313260 SAMN35777120-rid18422603.denovo.104, whole genome shotgun sequence	3413..3674																																																avrA	ABOAML010000026.1	61520..62389	99.54	870	0						
GCA_032812105.1_PDT001781177.1_genomic.fna	Salmonella_enterica	0.5215	50.135 KB	31	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAMN010000061.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313263 SAMN35777141-rid18422593.denovo.061, whole genome shotgun sequence	12483..12920	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAMN010000112.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313263 SAMN35777141-rid18422593.denovo.115, whole genome shotgun sequence	5173..6009	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOAMN010000112.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313263 SAMN35777141-rid18422593.denovo.115, whole genome shotgun sequence	6009..6812	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOAMN010000227.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313263 SAMN35777141-rid18422593.guided.101, whole genome shotgun sequence	4573..5010	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAMN010000229.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313263 SAMN35777141-rid18422593.guided.136, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOAMN010000229.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313263 SAMN35777141-rid18422593.guided.136, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOAMN010000154.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313263 SAMN35777141-rid18422593.denovo.159, whole genome shotgun sequence	1854..3059	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOAMN010000230.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313263 SAMN35777141-rid18422593.guided.158, whole genome shotgun sequence	1886..3091	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOAMN010000150.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313263 SAMN35777141-rid18422593.denovo.154, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABOAMN010000112.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313263 SAMN35777141-rid18422593.denovo.115, whole genome shotgun sequence	4289..4550		enterobacteriales	IncFII	96.95	262 / 261	ABOAMN010000229.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313263 SAMN35777141-rid18422593.guided.136, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOAMN010000125.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313263 SAMN35777141-rid18422593.denovo.128, whole genome shotgun sequence	4479..4620		enterobacteriales	IncX1	100	373 / 373	ABOAMN010000183.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313263 SAMN35777141-rid18422593.denovo.188, whole genome shotgun sequence	1118..1490																											avrA	ABOAMN010000092.1	13756..14625	99.655	870	0						
GCA_032812145.1_PDT001781175.1_genomic.fna	Salmonella_enterica	0.5213	69.307 KB	21	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOAMO010000005.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS22313261 SAMN35777117-rid18422573.denovo.005, whole genome shotgun sequence	97944..98381	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOAMO010000118.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS22313261 SAMN35777117-rid18422573.guided.059, whole genome shotgun sequence	15469..15906	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAMO010000007.1	102260..103129	99.77	870	0						
GCA_032812165.1_PDT001781173.1_genomic.fna	Salmonella_enterica	0.5206	61.542 KB	26	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAMP010000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313258 SAMN35777121-rid18422553.denovo.008, whole genome shotgun sequence	12394..12831	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAMP010000109.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313258 SAMN35777121-rid18422553.denovo.111, whole genome shotgun sequence	3878..4714	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOAMP010000109.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313258 SAMN35777121-rid18422553.denovo.111, whole genome shotgun sequence	4714..5517	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOAMP010000208.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313258 SAMN35777121-rid18422553.guided.122, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOAMP010000208.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313258 SAMN35777121-rid18422553.guided.122, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOAMP010000209.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313258 SAMN35777121-rid18422553.guided.123, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOAMP010000089.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313258 SAMN35777121-rid18422553.denovo.090, whole genome shotgun sequence	9456..10601	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOAMP010000207.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313258 SAMN35777121-rid18422553.guided.119, whole genome shotgun sequence	3774..4919	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	tet(B)	100	1206/1206	ABOAMP010000130.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313258 SAMN35777121-rid18422553.denovo.136, whole genome shotgun sequence	633..1838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOAMP010000210.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313258 SAMN35777121-rid18422553.guided.135, whole genome shotgun sequence	2232..3437	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOAMP010000128.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313258 SAMN35777121-rid18422553.denovo.133, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOAMP010000109.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313258 SAMN35777121-rid18422553.denovo.111, whole genome shotgun sequence	2994..3255		enterobacteriales	IncFII	96.95	262 / 261	ABOAMP010000208.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313258 SAMN35777121-rid18422553.guided.122, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOAMP010000103.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313258 SAMN35777121-rid18422553.denovo.105, whole genome shotgun sequence	4767..4908		enterobacteriales	IncX1	100	373 / 373	ABOAMP010000147.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313258 SAMN35777121-rid18422553.denovo.153, whole genome shotgun sequence	2153..2525																											avrA	ABOAMP010000039.1	39484..40353	99.655	870	0						
GCA_032812185.1_PDT001781172.1_genomic.fna	Salmonella_enterica	0.5224	59.212 KB	28	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAMR010000059.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313259 SAMN35777119-rid18422543.denovo.059, whole genome shotgun sequence	13072..13509	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOAMR010000139.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313259 SAMN35777119-rid18422543.denovo.143, whole genome shotgun sequence	50..829	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABOAMR010000174.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313259 SAMN35777119-rid18422543.guided.092, whole genome shotgun sequence	14151..14588	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOAMR010000179.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313259 SAMN35777119-rid18422543.guided.163, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOAMR010000108.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313259 SAMN35777119-rid18422543.denovo.111, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOAMR010000178.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313259 SAMN35777119-rid18422543.guided.157, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABOAMR010000108.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313259 SAMN35777119-rid18422543.denovo.111, whole genome shotgun sequence	6603..7817	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABOAMR010000176.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313259 SAMN35777119-rid18422543.guided.119, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOAMR010000177.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313259 SAMN35777119-rid18422543.guided.148, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABOAMR010000108.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313259 SAMN35777119-rid18422543.denovo.111, whole genome shotgun sequence	4491..5666	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABOAMR010000176.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313259 SAMN35777119-rid18422543.guided.119, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	IncFIB(S)	100	643 / 643	ABOAMR010000106.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313259 SAMN35777119-rid18422543.denovo.109, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOAMR010000102.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313259 SAMN35777119-rid18422543.denovo.105, whole genome shotgun sequence	9325..9586																																																avrA	ABOAMR010000008.1	61666..62535	99.885	870	0						
GCA_032812205.1_PDT001781170.1_genomic.fna	Salmonella_enterica	0.5232	68.163 KB	25	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAMS010000012.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313257 SAMN35777115-rid18422533.denovo.012, whole genome shotgun sequence	75529..75966	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOAMS010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313257 SAMN35777115-rid18422533.denovo.046, whole genome shotgun sequence	1228..2019	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAMS010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313257 SAMN35777115-rid18422533.denovo.046, whole genome shotgun sequence	1228..2019	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOAMS010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313257 SAMN35777115-rid18422533.guided.064, whole genome shotgun sequence	15846..16283	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOAMS010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313257 SAMN35777115-rid18422533.guided.099, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAMS010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313257 SAMN35777115-rid18422533.guided.099, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOAMS010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313257 SAMN35777115-rid18422533.denovo.046, whole genome shotgun sequence	2524..3363	Sulfamethoxazole	U12338	sul1	100	840/840	ABOAMS010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313257 SAMN35777115-rid18422533.guided.099, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOAMS010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313257 SAMN35777115-rid18422533.denovo.046, whole genome shotgun sequence	15880..17079	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOAMS010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313257 SAMN35777115-rid18422533.guided.097, whole genome shotgun sequence	5882..7081	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOAMS010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313257 SAMN35777115-rid18422533.denovo.107, whole genome shotgun sequence	5599..6158																																																						avrA	ABOAMS010000026.1	61405..62274	99.655	870	0						
GCA_032812225.1_PDT001781168.1_genomic.fna	Salmonella_enterica	0.5225	58.99 KB	24	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAMT010000019.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313241 SAMN35777113-rid18422513.denovo.019, whole genome shotgun sequence	12499..12936	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOAMT010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313241 SAMN35777113-rid18422513.denovo.110, whole genome shotgun sequence	3965..4990	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOAMT010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313241 SAMN35777113-rid18422513.denovo.110, whole genome shotgun sequence	2960..3736	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOAMT010000175.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313241 SAMN35777113-rid18422513.guided.049, whole genome shotgun sequence	32307..32744	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOAMT010000179.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313241 SAMN35777113-rid18422513.guided.131, whole genome shotgun sequence	247..1272	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOAMT010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313241 SAMN35777113-rid18422513.guided.164, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOAMT010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313241 SAMN35777113-rid18422513.denovo.124, whole genome shotgun sequence	2020..3233	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOAMT010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313241 SAMN35777113-rid18422513.guided.123, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107																																																																																																																																																																																																																																																																																																																																																																																																																gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOAMT010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313241 SAMN35777113-rid18422513.denovo.118, whole genome shotgun sequence	2125..2684																																																						avrA	ABOAMT010000038.1	39526..40395	99.655	870	0						
GCA_032812245.1_PDT001781167.1_genomic.fna	Salmonella_enterica	0.5238	50.797 KB	30	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOAMU010000019.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313240 SAMN35777112-rid18422503.denovo.019, whole genome shotgun sequence	12510..12947	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOAMU010000201.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313240 SAMN35777112-rid18422503.guided.091, whole genome shotgun sequence	15538..15975	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOAMU010000150.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313240 SAMN35777112-rid18422503.denovo.153, whole genome shotgun sequence	1767..2409	enterobacteriales	IncFII(S)	100	262 / 262	ABOAMU010000102.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313240 SAMN35777112-rid18422503.denovo.103, whole genome shotgun sequence	12306..12567																																																avrA	ABOAMU010000017.1	62150..63018	100	869	0						
GCA_032812265.1_PDT001781165.1_genomic.fna	Salmonella_enterica	0.5227	64.284 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aadA1,aadA1,aac(6')-Iaa,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aadA1	99.75	792/792	ABOAMV010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313238 SAMN35777094-rid18422483.denovo.045, whole genome shotgun sequence	22836..23627	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAMV010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313238 SAMN35777094-rid18422483.denovo.045, whole genome shotgun sequence	22836..23627	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOAMV010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313238 SAMN35777094-rid18422483.denovo.060, whole genome shotgun sequence	15446..15883	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAMV010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313238 SAMN35777094-rid18422483.guided.059, whole genome shotgun sequence	15469..15906	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOAMV010000161.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313238 SAMN35777094-rid18422483.guided.091, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAMV010000161.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313238 SAMN35777094-rid18422483.guided.091, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOAMV010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313238 SAMN35777094-rid18422483.denovo.045, whole genome shotgun sequence	21492..22331	Sulfamethoxazole	U12338	sul1	100	840/840	ABOAMV010000161.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313238 SAMN35777094-rid18422483.guided.091, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOAMV010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313238 SAMN35777094-rid18422483.denovo.045, whole genome shotgun sequence	7776..8975	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOAMV010000162.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313238 SAMN35777094-rid18422483.guided.113, whole genome shotgun sequence	1802..3001	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOAMV010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313238 SAMN35777094-rid18422483.denovo.045, whole genome shotgun sequence	38149..38708																																																						avrA	ABOAMV010000011.1	61411..62280	99.655	870	0						
GCA_032812285.1_PDT001781161.1_genomic.fna	Salmonella_enterica	0.5229	83.174 KB	20	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAMX010000029.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS22313235 SAMN35777091-rid18422443.denovo.029, whole genome shotgun sequence	11369..11806	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAMX010000114.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS22313235 SAMN35777091-rid18422443.guided.062, whole genome shotgun sequence	20602..21039	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032812305.1_PDT001781163.1_genomic.fna	Salmonella_enterica	0.521	77.99 KB	22	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAMW010000026.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313239 SAMN35777095-rid18422463.denovo.026, whole genome shotgun sequence	52311..52748	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAMW010000153.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313239 SAMN35777095-rid18422463.guided.069, whole genome shotgun sequence	8085..8522	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABOAMW010000079.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313239 SAMN35777095-rid18422463.denovo.081, whole genome shotgun sequence	4236..4495	enterobacteriales	IncX1	100	373 / 373	ABOAMW010000112.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313239 SAMN35777095-rid18422463.denovo.114, whole genome shotgun sequence	2732..3104																																																avrA	ABOAMW010000037.1	39484..40353	99.655	870	0						
GCA_032812325.1_PDT001781160.1_genomic.fna	Salmonella_enterica	0.5225	68.242 KB	22	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAMY010000021.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313237 SAMN35777093-rid18422433.denovo.021, whole genome shotgun sequence	20182..20619	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAMY010000133.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313237 SAMN35777093-rid18422433.guided.066, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAMY010000105.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313237 SAMN35777093-rid18422433.denovo.108, whole genome shotgun sequence	1367..2009	enterobacteriales	IncFII(S)	100	262 / 262	ABOAMY010000093.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313237 SAMN35777093-rid18422433.denovo.096, whole genome shotgun sequence	3392..3653																																																avrA	ABOAMY010000026.1	62018..62887	99.54	870	0						
GCA_032812345.1_PDT001781171.1_genomic.fna	Salmonella_enterica	0.5229	60.925 KB	27	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAMQ010000023.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.denovo.023, whole genome shotgun sequence	12525..12962	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOAMQ010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.denovo.077, whole genome shotgun sequence	18455..19246	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAMQ010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.denovo.077, whole genome shotgun sequence	18455..19246	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOAMQ010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.denovo.122, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOAMQ010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.denovo.122, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOAMQ010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.guided.084, whole genome shotgun sequence	5121..5558	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOAMQ010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.guided.116, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOAMQ010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.guided.116, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOAMQ010000169.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.guided.133, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOAMQ010000169.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.guided.133, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOAMQ010000122.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.denovo.128, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOAMQ010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.guided.138, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOAMQ010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.denovo.124, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOAMQ010000168.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.guided.123, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOAMQ010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.denovo.077, whole genome shotgun sequence	17111..17950	Sulfamethoxazole	U12338	sul1	100	840/840	ABOAMQ010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.guided.116, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOAMQ010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.denovo.077, whole genome shotgun sequence	3395..4594	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOAMQ010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.guided.114, whole genome shotgun sequence	1932..3131	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOAMQ010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313262 SAMN35777118-rid18421953.denovo.115, whole genome shotgun sequence	4784..5343																																																						avrA	ABOAMQ010000011.1	83694..84563	99.655	870	0						
GCA_032812365.1_PDT001781150.1_genomic.fna	Salmonella_enterica	0.5209	433.791 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOANC010000001.1 Salmonella enterica strain PNUSAS356559 SAMN35774780-rid18422333.denovo.01, whole genome shotgun sequence	293127..293564	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOANC010000030.1 Salmonella enterica strain PNUSAS356559 SAMN35774780-rid18422333.guided.18, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOANC010000020.1 Salmonella enterica strain PNUSAS356559 SAMN35774780-rid18422333.denovo.22, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABOANC010000022.1 Salmonella enterica strain PNUSAS356559 SAMN35774780-rid18422333.denovo.24, whole genome shotgun sequence	3394..3655																																																avrA	ABOANC010000007.1	174788..175657	99.54	870	0						
GCA_032812385.1_PDT001781153.1_genomic.fna	Salmonella_enterica	0.5211	150.787 KB	10	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOAMZ010000005.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS22313231 SAMN35777083-rid18422363.denovo.05, whole genome shotgun sequence	83621..84058	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOAMZ010000071.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS22313231 SAMN35777083-rid18422363.guided.55, whole genome shotgun sequence	8093..8530	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAMZ010000007.1	147981..148850	99.77	870	0						
GCA_032812425.1_PDT001781158.1_genomic.fna	Salmonella_enterica	0.521	489.665 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOANA010000001.1 Salmonella enterica strain PNUSAS356480 SAMN35774984-rid18422413.denovo.01, whole genome shotgun sequence	293258..293695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOANA010000031.1 Salmonella enterica strain PNUSAS356480 SAMN35774984-rid18422413.guided.22, whole genome shotgun sequence	10593..11030	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOANA010000019.1 Salmonella enterica strain PNUSAS356480 SAMN35774984-rid18422413.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOANA010000020.1 Salmonella enterica strain PNUSAS356480 SAMN35774984-rid18422413.denovo.23, whole genome shotgun sequence	3398..3659																																																avrA	ABOANA010000002.1	584112..584981	99.54	870	0						
GCA_032812445.1_PDT001781136.1_genomic.fna	Salmonella_enterica	0.5224	203.131 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOANI010000001.1 Salmonella enterica strain PNUSAS356556 isolate 23-000773-BAC-01 SAMN35774790-rid18421943.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOANI010000040.1 Salmonella enterica strain PNUSAS356556 isolate 23-000773-BAC-01 SAMN35774790-rid18421943.guided.24, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOANI010000003.1	149552..150421	99.655	870	0						
GCA_032812465.1_PDT001781140.1_genomic.fna	Salmonella_enterica	0.522	263.296 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOANE010000001.1 Salmonella enterica strain PNUSAS356554 isolate 23-000771-BAC-01 SAMN35774778-rid18422233.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOANE010000041.1 Salmonella enterica strain PNUSAS356554 isolate 23-000771-BAC-01 SAMN35774778-rid18422233.guided.29, whole genome shotgun sequence	15154..15591	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOANE010000007.1	39430..40299	99.655	870	0						
GCA_032812495.1_PDT001781137.1_genomic.fna	Salmonella_enterica	0.519	308.501 KB	6	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOANH010000001.1 Salmonella enterica strain PNUSAS356555 isolate 23-000772-BAC-01 SAMN35774791-rid18422203.denovo.01, whole genome shotgun sequence	604857..605294	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOANH010000030.1 Salmonella enterica strain PNUSAS356555 isolate 23-000772-BAC-01 SAMN35774791-rid18422203.denovo.33, whole genome shotgun sequence	6683..7519	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOANH010000030.1 Salmonella enterica strain PNUSAS356555 isolate 23-000772-BAC-01 SAMN35774791-rid18422203.denovo.33, whole genome shotgun sequence	7519..8322	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOANH010000042.1 Salmonella enterica strain PNUSAS356555 isolate 23-000772-BAC-01 SAMN35774791-rid18422203.guided.23, whole genome shotgun sequence	12710..13147	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOANH010000046.1 Salmonella enterica strain PNUSAS356555 isolate 23-000772-BAC-01 SAMN35774791-rid18422203.guided.37, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOANH010000046.1 Salmonella enterica strain PNUSAS356555 isolate 23-000772-BAC-01 SAMN35774791-rid18422203.guided.37, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOANH010000032.1 Salmonella enterica strain PNUSAS356555 isolate 23-000772-BAC-01 SAMN35774791-rid18422203.denovo.35, whole genome shotgun sequence	1457..2662	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOANH010000045.1 Salmonella enterica strain PNUSAS356555 isolate 23-000772-BAC-01 SAMN35774791-rid18422203.guided.36, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOANH010000014.1 Salmonella enterica strain PNUSAS356555 isolate 23-000772-BAC-01 SAMN35774791-rid18422203.denovo.14, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOANH010000030.1 Salmonella enterica strain PNUSAS356555 isolate 23-000772-BAC-01 SAMN35774791-rid18422203.denovo.33, whole genome shotgun sequence	5799..6060		enterobacteriales	IncFII	96.95	262 / 261	ABOANH010000046.1 Salmonella enterica strain PNUSAS356555 isolate 23-000772-BAC-01 SAMN35774791-rid18422203.guided.37, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOANH010000029.1 Salmonella enterica strain PNUSAS356555 isolate 23-000772-BAC-01 SAMN35774791-rid18422203.denovo.32, whole genome shotgun sequence	2153..2525																																		avrA	ABOANH010000002.1	39350..40219	99.655	870	0						
GCA_032812515.1_PDT001781138.1_genomic.fna	Salmonella_enterica	0.5213	346.255 KB	5	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	3	aac(6')-Iaa,aph(6)-Id,aac(6')-Iaa,aph(6)-Id,tet(A),tet(A)	2	gyrA_p.S83Y,parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOANF010000001.1 Salmonella enterica strain PNUSAS356557 isolate 23-000774-BAC-01 SAMN35774777-rid18422213.denovo.01, whole genome shotgun sequence	674998..675435	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	820/837	ABOANF010000030.1 Salmonella enterica strain PNUSAS356557 isolate 23-000774-BAC-01 SAMN35774777-rid18422213.denovo.35, whole genome shotgun sequence	2457..3276	Streptomycin	M28829	aac(6')-Iaa	99.54	438/438	ABOANF010000041.1 Salmonella enterica strain PNUSAS356557 isolate 23-000774-BAC-01 SAMN35774777-rid18422213.guided.24, whole genome shotgun sequence	12210..12647	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	826/837	ABOANF010000045.1 Salmonella enterica strain PNUSAS356557 isolate 23-000774-BAC-01 SAMN35774777-rid18422213.guided.34, whole genome shotgun sequence	37..861	Streptomycin	M28829	tet(A)	100	1200/1200	ABOANF010000028.1 Salmonella enterica strain PNUSAS356557 isolate 23-000774-BAC-01 SAMN35774777-rid18422213.denovo.31, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOANF010000044.1 Salmonella enterica strain PNUSAS356557 isolate 23-000774-BAC-01 SAMN35774777-rid18422213.guided.33, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																														gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	ColpVC	98.96	193 / 193	ABOANF010000033.1 Salmonella enterica strain PNUSAS356557 isolate 23-000774-BAC-01 SAMN35774777-rid18422213.denovo.38, whole genome shotgun sequence	194..386																																																						avrA	ABOANF010000015.1	39546..40415	99.655	870	0						
GCA_032812545.1_PDT001781169.1_genomic.fna	Salmonella_enterica	0.5232	58.085 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOANK010000020.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313256 SAMN35777114-rid18422523.denovo.020, whole genome shotgun sequence	12504..12941	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOANK010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313256 SAMN35777114-rid18422523.denovo.070, whole genome shotgun sequence	18455..19246	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOANK010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313256 SAMN35777114-rid18422523.denovo.070, whole genome shotgun sequence	18455..19246	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOANK010000176.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313256 SAMN35777114-rid18422523.guided.059, whole genome shotgun sequence	24624..25061	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOANK010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313256 SAMN35777114-rid18422523.guided.114, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOANK010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313256 SAMN35777114-rid18422523.guided.114, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOANK010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313256 SAMN35777114-rid18422523.denovo.070, whole genome shotgun sequence	17111..17950	Sulfamethoxazole	U12338	sul1	100	840/840	ABOANK010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313256 SAMN35777114-rid18422523.guided.114, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOANK010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313256 SAMN35777114-rid18422523.denovo.070, whole genome shotgun sequence	3395..4594	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOANK010000179.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313256 SAMN35777114-rid18422523.guided.101, whole genome shotgun sequence	7517..8716	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOANK010000119.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313256 SAMN35777114-rid18422523.denovo.124, whole genome shotgun sequence	2135..2694																																																						avrA	ABOANK010000035.1	39697..40566	99.655	870	0						
GCA_032812585.1_PDT001781156.1_genomic.fna	Salmonella_enterica	0.5227	77.422 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOANN010000005.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.denovo.005, whole genome shotgun sequence	76117..76554	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOANN010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.denovo.069, whole genome shotgun sequence	18434..19225	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOANN010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.denovo.069, whole genome shotgun sequence	18434..19225	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOANN010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.denovo.104, whole genome shotgun sequence	1052..2077	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOANN010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.denovo.104, whole genome shotgun sequence	47..823	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOANN010000137.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.guided.067, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOANN010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.guided.099, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOANN010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.guided.099, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOANN010000142.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.guided.103, whole genome shotgun sequence	1093..2118	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOANN010000142.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.guided.103, whole genome shotgun sequence	88..864	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOANN010000104.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.denovo.112, whole genome shotgun sequence	901..1776	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOANN010000144.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.guided.110, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABOANN010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.denovo.069, whole genome shotgun sequence	17090..17929	Sulfamethoxazole	U12338	sul1	100	840/840	ABOANN010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.guided.099, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOANN010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.denovo.069, whole genome shotgun sequence	3374..4573	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOANN010000139.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.guided.093, whole genome shotgun sequence	7849..9048	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOANN010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.denovo.101, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOANN010000143.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.guided.106, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOANN010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313232 SAMN35777084-rid18422393.denovo.082, whole genome shotgun sequence	2605..3164																																																						avrA	ABOANN010000012.1	105528..106397	99.655	870	0						
GCA_032812605.1_PDT001781159.1_genomic.fna	Salmonella_enterica	0.5222	92.59 KB	15	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOANL010000038.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313236 SAMN35777092-rid18422423.denovo.038, whole genome shotgun sequence	20279..20716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOANL010000117.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313236 SAMN35777092-rid18422423.guided.050, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOANL010000071.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313236 SAMN35777092-rid18422423.denovo.074, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABOANL010000081.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313236 SAMN35777092-rid18422423.denovo.084, whole genome shotgun sequence	3392..3653																																																avrA	ABOANL010000023.1	62025..62894	99.54	870	0						
GCA_032812625.1_PDT001781157.1_genomic.fna	Salmonella_enterica	0.5221	88.133 KB	20	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOANM010000005.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.denovo.005, whole genome shotgun sequence	15519..15956	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOANM010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.denovo.064, whole genome shotgun sequence	22971..23762	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOANM010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.denovo.064, whole genome shotgun sequence	22971..23762	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOANM010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.denovo.094, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOANM010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.denovo.094, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOANM010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.denovo.118, whole genome shotgun sequence	92..907	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin	X62115	aac(6')-Iaa	97.49	438/438	ABOANM010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.guided.034, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOANM010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.guided.065, whole genome shotgun sequence	1196..1987	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOANM010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.guided.065, whole genome shotgun sequence	1196..1987	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOANM010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.guided.093, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOANM010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.guided.093, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOANM010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.guided.115, whole genome shotgun sequence	126..941	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin	X62115	floR	98.19	1214/1215	ABOANM010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.denovo.091, whole genome shotgun sequence	2799..4012	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOANM010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.guided.100, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOANM010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.denovo.064, whole genome shotgun sequence	21627..22466	Sulfamethoxazole	U12338	sul1	100	840/840	ABOANM010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.guided.065, whole genome shotgun sequence	2492..3331	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOANM010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.denovo.064, whole genome shotgun sequence	7911..9110	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOANM010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.guided.065, whole genome shotgun sequence	15848..17047	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOANM010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.denovo.089, whole genome shotgun sequence	3121..3594	Trimethoprim	AF393510	dfrA14	100	474/474	ABOANM010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.guided.097, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOANM010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313233 SAMN35777085-rid18422403.denovo.074, whole genome shotgun sequence	2149..2708																																																						avrA	ABOANM010000014.1	94091..94960	99.655	870	0						
GCA_032812645.1_PDT001781155.1_genomic.fna	Salmonella_enterica	0.5199	55.37 KB	29	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOANO010000017.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.denovo.017, whole genome shotgun sequence	58455..58892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOANO010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.denovo.050, whole genome shotgun sequence	4910..5746	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOANO010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.denovo.050, whole genome shotgun sequence	4108..4910	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOANO010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.denovo.050, whole genome shotgun sequence	4107..4910	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOANO010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.denovo.050, whole genome shotgun sequence	4107..4910	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOANO010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.denovo.050, whole genome shotgun sequence	4107..4910	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABOANO010000221.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.guided.057, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	99.88	803/804	ABOANO010000223.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.guided.146, whole genome shotgun sequence	2301..3103	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	ABOANO010000223.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.guided.146, whole genome shotgun sequence	2300..3103	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	ABOANO010000223.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.guided.146, whole genome shotgun sequence	2300..3103	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	ABOANO010000223.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.guided.146, whole genome shotgun sequence	2300..3103	Streptomycin	AF321550	aph(3'')-Ib	100	803/804	ABOANO010000224.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.guided.147, whole genome shotgun sequence	2301..3103	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOANO010000224.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.guided.147, whole genome shotgun sequence	2300..3103	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOANO010000224.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.guided.147, whole genome shotgun sequence	2300..3103	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOANO010000224.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.guided.147, whole genome shotgun sequence	2300..3103	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABOANO010000225.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.guided.159, whole genome shotgun sequence	15..851	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOANO010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.denovo.119, whole genome shotgun sequence	1925..2251	enterobacteriales	IncHI2A	99.52	630 / 630	ABOANO010000113.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.denovo.116, whole genome shotgun sequence	2734..3363		enterobacteriales	IncX1	100	373 / 373	ABOANO010000163.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313234 SAMN35777086-rid18422383.denovo.169, whole genome shotgun sequence	1158..1530																																									avrA	ABOANO010000042.1	39484..40353	99.655	870	0						
GCA_032812685.1_PDT001781152.1_genomic.fna	Salmonella_enterica	0.5214	89.102 KB	18	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	-:z4,z23:-	8	aac(6')-Iaa,aac(3)-VIa,aadA1,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA1,aadA1,aac(3)-VIa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,sul1,sul1,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOANQ010000049.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.denovo.050, whole genome shotgun sequence	14094..14531	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOANQ010000052.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.denovo.055, whole genome shotgun sequence	18435..19337	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	99.75	792/792	ABOANQ010000052.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.denovo.055, whole genome shotgun sequence	19501..20292	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOANQ010000052.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.denovo.055, whole genome shotgun sequence	19501..20292	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOANQ010000091.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.denovo.099, whole genome shotgun sequence	2070..2906	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOANQ010000091.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.denovo.099, whole genome shotgun sequence	2906..3709	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOANQ010000148.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.guided.052, whole genome shotgun sequence	14125..14562	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOANQ010000153.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.guided.095, whole genome shotgun sequence	5868..6659	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOANQ010000153.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.guided.095, whole genome shotgun sequence	5868..6659	Spectinomycin, Streptomycin	JQ414041	aac(3)-VIa	100	903/903	ABOANQ010000154.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.guided.097, whole genome shotgun sequence	37..939	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aph(6)-Id	100	837/837	ABOANQ010000155.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.guided.101, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOANQ010000155.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.guided.101, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	ABOANQ010000033.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.denovo.033, whole genome shotgun sequence	16868..17290	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	ABOANQ010000147.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.guided.048, whole genome shotgun sequence	31543..31965	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABOANQ010000052.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.denovo.055, whole genome shotgun sequence	11596..12435	Sulfamethoxazole	U12338	sul1	100	840/840	ABOANQ010000152.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.guided.086, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABOANQ010000104.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.denovo.113, whole genome shotgun sequence	2200..3405	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOANQ010000156.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.guided.114, whole genome shotgun sequence	2051..3256	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOANQ010000098.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.denovo.107, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOANQ010000091.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.denovo.099, whole genome shotgun sequence	1186..1447		enterobacteriales	IncFII	96.95	262 / 261	ABOANQ010000155.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.guided.101, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOANQ010000052.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.denovo.055, whole genome shotgun sequence	239..380		enterobacteriales	IncX1	100	373 / 373	ABOANQ010000085.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313091 SAMN35776910-rid18422353.denovo.091, whole genome shotgun sequence	2153..2525																											avrA	ABOANQ010000011.1	113118..113987	99.08	870	0						
GCA_032812705.1_PDT001781149.1_genomic.fna	Salmonella_enterica	0.5207	55.661 KB	29	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOANS010000034.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS22313078 SAMN35776909-rid18422323.denovo.034, whole genome shotgun sequence	15475..15912	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOANS010000186.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS22313078 SAMN35776909-rid18422323.guided.097, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOANS010000142.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS22313078 SAMN35776909-rid18422323.denovo.145, whole genome shotgun sequence	557..687	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOANS010000155.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS22313078 SAMN35776909-rid18422323.denovo.158, whole genome shotgun sequence	241..382																																																avrA	ABOANS010000041.1	39350..40219	99.54	870	0						
GCA_032812725.1_PDT001781151.1_genomic.fna	Salmonella_enterica	0.5209	77.543 KB	19	aroC_202,dnaN_4,hemD_10,hisD_33,purE_90,sucA_6,thrA_275	1799	-:y:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_202	dnaN	100	100	dnaN_4	hemD	100	100	hemD_10	hisD	100	100	hisD_33	purE	100	100	purE_90	sucA	100	100	sucA_6	thrA	100	100	thrA_275	-	y	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:y:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOANP010000025.1 Salmonella enterica subsp. enterica serovar Krefeld strain FSIS22313129 SAMN35776911-rid18422343.denovo.025, whole genome shotgun sequence	8876..9313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOANP010000137.1 Salmonella enterica subsp. enterica serovar Krefeld strain FSIS22313129 SAMN35776911-rid18422343.guided.087, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOANP010000018.1	77733..78602	99.77	870	0						
GCA_032812795.1_PDT001781133.1_genomic.fna	Salmonella_enterica	0.521	225.555 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOANV010000001.1 Salmonella enterica strain PNUSAS356558 SAMN35774781-rid18422183.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOANV010000050.1 Salmonella enterica strain PNUSAS356558 SAMN35774781-rid18422183.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOANV010000025.1 Salmonella enterica strain PNUSAS356558 SAMN35774781-rid18422183.denovo.27, whole genome shotgun sequence	44748..45390	enterobacteriales	IncFII(S)	100	262 / 262	ABOANV010000025.1 Salmonella enterica strain PNUSAS356558 SAMN35774781-rid18422183.denovo.27, whole genome shotgun sequence	29402..29663																																																avrA	ABOANV010000004.1	157894..158762	100	869	0						
GCA_032812865.1_PDT001781127.1_genomic.fna	Salmonella_enterica	0.518	234.017 KB	6	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	ColpVC,IncI2(Delta)	aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAOA010000003.1 Salmonella enterica strain PNUSAS356504 SAMN35773566-rid18422123.denovo.03, whole genome shotgun sequence	386386..386823	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAOA010000044.1 Salmonella enterica strain PNUSAS356504 SAMN35773566-rid18422123.guided.31, whole genome shotgun sequence	20592..21029	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABOAOA010000035.1 Salmonella enterica strain PNUSAS356504 SAMN35773566-rid18422123.denovo.38, whole genome shotgun sequence	194..386	enterobacteriales	IncI2(Delta)	97.83	322 / 316	ABOAOA010000021.1 Salmonella enterica strain PNUSAS356504 SAMN35773566-rid18422123.denovo.21, whole genome shotgun sequence	30261..30582																																																											
GCA_032812925.1_PDT001781124.1_genomic.fna	Salmonella_enterica	0.5213	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAOB010000001.1 Salmonella enterica strain PNUSAS356500 SAMN35773569-rid18421913.denovo.01, whole genome shotgun sequence	898876..899313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAOB010000023.1 Salmonella enterica strain PNUSAS356500 SAMN35773569-rid18421913.guided.17, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAOB010000016.1 Salmonella enterica strain PNUSAS356500 SAMN35773569-rid18421913.denovo.18, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABOAOB010000013.1 Salmonella enterica strain PNUSAS356500 SAMN35773569-rid18421913.denovo.13, whole genome shotgun sequence	37108..37369																																																avrA	ABOAOB010000002.1	553187..554056	99.54	870	0						
GCA_032812945.1_PDT001781121.1_genomic.fna	Salmonella_enterica	0.5211	412.518 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAOC010000004.1 Salmonella enterica strain PNUSAS356525 SAMN35774087-rid18422083.denovo.04, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAOC010000031.1 Salmonella enterica strain PNUSAS356525 SAMN35774087-rid18422083.guided.15, whole genome shotgun sequence	32377..32814	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAOC010000015.1 Salmonella enterica strain PNUSAS356525 SAMN35774087-rid18422083.denovo.16, whole genome shotgun sequence	40533..41175	enterobacteriales	IncFII(S)	100	262 / 262	ABOAOC010000019.1 Salmonella enterica strain PNUSAS356525 SAMN35774087-rid18422083.denovo.22, whole genome shotgun sequence	3425..3686																																																avrA	ABOAOC010000001.1	585453..586322	99.54	870	0						
GCA_032812965.1_PDT001781108.1_genomic.fna	Salmonella_enterica	0.5207	400.794 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAOD010000001.1 Salmonella enterica strain PNUSAS356499 SAMN35773557-rid18411823.denovo.01, whole genome shotgun sequence	815076..815513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAOD010000025.1 Salmonella enterica strain PNUSAS356499 SAMN35773557-rid18411823.guided.20, whole genome shotgun sequence	19687..20124	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAOD010000019.1 Salmonella enterica strain PNUSAS356499 SAMN35773557-rid18411823.denovo.21, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOAOD010000020.1 Salmonella enterica strain PNUSAS356499 SAMN35773557-rid18411823.denovo.23, whole genome shotgun sequence	3376..3637		enterobacteriales	IncI(Gamma)	100	137 / 141	ABOAOD010000015.1 Salmonella enterica strain PNUSAS356499 SAMN35773557-rid18411823.denovo.15, whole genome shotgun sequence	76287..76423																																									avrA	ABOAOD010000002.1	553176..554045	99.54	870	0						
GCA_032812985.1_PDT001781106.1_genomic.fna	Salmonella_enterica	0.5222	263.407 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAOF010000001.1 Salmonella enterica strain PNUSAS356522 SAMN35774084-rid18411803.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAOF010000036.1 Salmonella enterica strain PNUSAS356522 SAMN35774084-rid18411803.guided.23, whole genome shotgun sequence	5648..6085	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAOF010000005.1	39349..40218	99.655	870	0						
GCA_032813005.1_PDT001781107.1_genomic.fna	Salmonella_enterica	0.5219	353.985 KB	6	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col8282	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOAOE010000001.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.denovo.01, whole genome shotgun sequence	674599..675036	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAOE010000024.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.denovo.27, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOAOE010000024.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.denovo.27, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOAOE010000024.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.denovo.27, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOAOE010000024.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.denovo.27, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOAOE010000024.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.denovo.27, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOAOE010000041.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.guided.22, whole genome shotgun sequence	19276..19713	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAOE010000044.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.guided.30, whole genome shotgun sequence	2008..2844	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOAOE010000044.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.guided.30, whole genome shotgun sequence	1206..2008	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOAOE010000044.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.guided.30, whole genome shotgun sequence	1205..2008	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOAOE010000044.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.guided.30, whole genome shotgun sequence	1205..2008	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOAOE010000044.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.guided.30, whole genome shotgun sequence	1205..2008	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOAOE010000027.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.denovo.31, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOAOE010000045.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.guided.37, whole genome shotgun sequence	326..1525	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.24	116 / 131	ABOAOE010000026.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.denovo.29, whole genome shotgun sequence	1226..1341	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOAOE010000028.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.denovo.32, whole genome shotgun sequence	3094..3224		enterobacteriales	Col8282	90.1	202 / 207	ABOAOE010000030.1 Salmonella enterica strain PNUSAS356505 SAMN35773563-rid18411813.denovo.34, whole genome shotgun sequence	416..617																																									avrA	ABOAOE010000002.1	39668..40537	99.655	870	0						
GCA_032813025.1_PDT001781103.1_genomic.fna	Salmonella_enterica	0.5214	283.987 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAOG010000001.1 Salmonella enterica strain PNUSAS356515 SAMN35774083-rid18411773.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAOG010000038.1 Salmonella enterica strain PNUSAS356515 SAMN35774083-rid18411773.guided.26, whole genome shotgun sequence	8285..8722	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAOG010000025.1 Salmonella enterica strain PNUSAS356515 SAMN35774083-rid18411773.denovo.27, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOAOG010000027.1 Salmonella enterica strain PNUSAS356515 SAMN35774083-rid18411773.denovo.30, whole genome shotgun sequence	3353..3614																																																avrA	ABOAOG010000002.1	504226..505095	99.54	870	0						
GCA_032813045.1_PDT001781102.1_genomic.fna	Salmonella_enterica	0.5225	244.243 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAOH010000001.1 Salmonella enterica strain PNUSAS356526 SAMN35774088-rid18411763.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAOH010000047.1 Salmonella enterica strain PNUSAS356526 SAMN35774088-rid18411763.guided.29, whole genome shotgun sequence	1248..1685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAOH010000002.1	149828..150697	99.655	870	0						
GCA_032813065.1_PDT001781101.1_genomic.fna	Salmonella_enterica	0.5225	291.886 KB	6	aroC_543,dnaN_69,hemD_101,hisD_12,purE_370,sucA_130,thrA_347	2553	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_543	dnaN	100	100	dnaN_69	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_370	sucA	100	100	sucA_130	thrA	100	100	thrA_347	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOAOI010000001.1 Salmonella enterica strain PNUSAS356524 SAMN35774085-rid18411753.denovo.01, whole genome shotgun sequence	247808..248245	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOAOI010000035.1 Salmonella enterica strain PNUSAS356524 SAMN35774085-rid18411753.guided.25, whole genome shotgun sequence	4199..4636	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAOI010000036.1 Salmonella enterica strain PNUSAS356524 SAMN35774085-rid18411753.guided.26, whole genome shotgun sequence	4199..4636	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAOI010000002.1	514142..515011	99.31	870	0						
GCA_032813085.1_PDT001781100.1_genomic.fna	Salmonella_enterica	0.5221	278.475 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOAOJ010000003.1 Salmonella enterica strain PNUSAS356509 SAMN35773560-rid18411743.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOAOJ010000038.1 Salmonella enterica strain PNUSAS356509 SAMN35773560-rid18411743.guided.29, whole genome shotgun sequence	11984..12421	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOAOJ010000023.1 Salmonella enterica strain PNUSAS356509 SAMN35773560-rid18411743.denovo.23, whole genome shotgun sequence	44739..45381	enterobacteriales	IncFII(S)	100	262 / 262	ABOAOJ010000023.1 Salmonella enterica strain PNUSAS356509 SAMN35773560-rid18411743.denovo.23, whole genome shotgun sequence	29393..29654																																																avrA	ABOAOJ010000001.1	446725..447593	100	869	0						
GCA_032813105.1_PDT001781097.1_genomic.fna	Salmonella_enterica	0.5226	244.38 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAOL010000001.1 Salmonella enterica strain PNUSAS356517 SAMN35774078-rid18411713.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAOL010000041.1 Salmonella enterica strain PNUSAS356517 SAMN35774078-rid18411713.guided.27, whole genome shotgun sequence	24917..25354	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAOL010000003.1	39538..40407	99.655	870	0						
GCA_032813125.1_PDT001781098.1_genomic.fna	Salmonella_enterica	0.5211	443.139 KB	4	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAOK010000001.1 Salmonella enterica strain PNUSAS356501 SAMN35773554-rid18411723.denovo.01, whole genome shotgun sequence	774475..774912	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAOK010000030.1 Salmonella enterica strain PNUSAS356501 SAMN35773554-rid18411723.guided.13, whole genome shotgun sequence	32228..32665	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAOK010000019.1 Salmonella enterica strain PNUSAS356501 SAMN35773554-rid18411723.denovo.21, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOAOK010000020.1 Salmonella enterica strain PNUSAS356501 SAMN35773554-rid18411723.denovo.23, whole genome shotgun sequence	3402..3663																																																avrA	ABOAOK010000002.1	506658..507527	99.54	870	0						
GCA_032813145.1_PDT001781094.1_genomic.fna	Salmonella_enterica	0.5219	343.531 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAOO010000001.1 Salmonella enterica strain PNUSAS356520 SAMN35774080-rid18411683.denovo.01, whole genome shotgun sequence	868804..869241	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAOO010000033.1 Salmonella enterica strain PNUSAS356520 SAMN35774080-rid18411683.guided.22, whole genome shotgun sequence	27038..27475	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAOO010000002.1	39356..40225	98.966	870	0						
GCA_032813185.1_PDT001781093.1_genomic.fna	Salmonella_enterica	0.521	255.87 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOAOP010000001.1 Salmonella enterica strain PNUSAS356521 SAMN35774082-rid18411673.denovo.01, whole genome shotgun sequence	167933..168370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOAOP010000030.1 Salmonella enterica strain PNUSAS356521 SAMN35774082-rid18411673.guided.19, whole genome shotgun sequence	2611..3048	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAOP010000002.1	144732..145601	99.31	870	0						
GCA_032813205.1_PDT001781095.1_genomic.fna	Salmonella_enterica	0.5207	284.253 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAON010000001.1 Salmonella enterica strain PNUSAS356518 SAMN35774081-rid18411693.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAON010000031.1 Salmonella enterica strain PNUSAS356518 SAMN35774081-rid18411693.guided.19, whole genome shotgun sequence	11142..11579	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAON010000017.1 Salmonella enterica strain PNUSAS356518 SAMN35774081-rid18411693.denovo.17, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOAON010000021.1 Salmonella enterica strain PNUSAS356518 SAMN35774081-rid18411693.denovo.24, whole genome shotgun sequence	3389..3650																																																avrA	ABOAON010000002.1	505304..506173	99.54	870	0						
GCA_032813225.1_PDT001781096.1_genomic.fna	Salmonella_enterica	0.5221	181.019 KB	8	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOAOM010000010.1 Salmonella enterica strain PNUSAS356519 SAMN35774079-rid18411703.denovo.10, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOAOM010000044.1 Salmonella enterica strain PNUSAS356519 SAMN35774079-rid18411703.guided.36, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAOM010000001.1	39604..40473	98.966	870	0						
GCA_032813245.1_PDT001781092.1_genomic.fna	Salmonella_enterica	0.5208	309.604 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOAOQ010000001.1 Salmonella enterica strain PNUSAS356516 SAMN35774089-rid18411663.denovo.01, whole genome shotgun sequence	167933..168370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOAOQ010000036.1 Salmonella enterica strain PNUSAS356516 SAMN35774089-rid18411663.guided.23, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAOQ010000002.1	144915..145784	99.31	870	0						
GCA_032813285.1_PDT001781088.1_genomic.fna	Salmonella_enterica	0.5214	489.863 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAOT010000001.1 Salmonella enterica strain PNUSAS356503 SAMN35773555-rid18411623.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAOT010000023.1 Salmonella enterica strain PNUSAS356503 SAMN35773555-rid18411623.guided.14, whole genome shotgun sequence	33961..34398	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAOT010000017.1 Salmonella enterica strain PNUSAS356503 SAMN35773555-rid18411623.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOAOT010000018.1 Salmonella enterica strain PNUSAS356503 SAMN35773555-rid18411623.denovo.20, whole genome shotgun sequence	3406..3667																																																avrA	ABOAOT010000002.1	553636..554505	99.54	870	0						
GCA_032813305.1_PDT001781089.1_genomic.fna	Salmonella_enterica	0.5225	201.639 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAOS010000001.1 Salmonella enterica strain PNUSAS356523 SAMN35774086-rid18411633.denovo.01, whole genome shotgun sequence	134763..135200	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAOS010000039.1 Salmonella enterica strain PNUSAS356523 SAMN35774086-rid18411633.guided.29, whole genome shotgun sequence	20252..20689	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAOS010000005.1	39349..40218	99.655	870	0						
GCA_032813325.1_PDT001781087.1_genomic.fna	Salmonella_enterica	0.5218	631.712 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOAOU010000001.1 Salmonella enterica strain PNUSAS356513 SAMN35773564-rid18411613.denovo.01, whole genome shotgun sequence	718318..718755	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOAOU010000021.1 Salmonella enterica strain PNUSAS356513 SAMN35773564-rid18411613.guided.15, whole genome shotgun sequence	1774..2211	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAOU010000002.1	563804..564673	99.77	870	0						
GCA_032813345.1_PDT001781086.1_genomic.fna	Salmonella_enterica	0.521	405.859 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAOV010000001.1 Salmonella enterica strain PNUSAS356510 SAMN35773570-rid18411603.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAOV010000026.1 Salmonella enterica strain PNUSAS356510 SAMN35773570-rid18411603.guided.14, whole genome shotgun sequence	32255..32692	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAOV010000017.1 Salmonella enterica strain PNUSAS356510 SAMN35773570-rid18411603.denovo.19, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABOAOV010000018.1 Salmonella enterica strain PNUSAS356510 SAMN35773570-rid18411603.denovo.20, whole genome shotgun sequence	3394..3655																																																avrA	ABOAOV010000002.1	553474..554343	99.54	870	0						
GCA_032813365.1_PDT001781085.1_genomic.fna	Salmonella_enterica	0.5215	257.839 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,catA1,catA1	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOAOW010000001.1 Salmonella enterica strain PNUSAS356507 SAMN35773561-rid18411593.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOAOW010000055.1 Salmonella enterica strain PNUSAS356507 SAMN35773561-rid18411593.guided.39, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	catA1	99.7	660/660	ABOAOW010000009.1 Salmonella enterica strain PNUSAS356507 SAMN35773561-rid18411593.denovo.09, whole genome shotgun sequence	183550..184209	Chloramphenicol	V00622	catA1	99.7	660/660	ABOAOW010000056.1 Salmonella enterica strain PNUSAS356507 SAMN35773561-rid18411593.guided.40, whole genome shotgun sequence	1677..2336	Chloramphenicol	V00622																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	100	643 / 643	ABOAOW010000024.1 Salmonella enterica strain PNUSAS356507 SAMN35773561-rid18411593.denovo.24, whole genome shotgun sequence	44732..45374	enterobacteriales	IncFII(S)	100	262 / 262	ABOAOW010000024.1 Salmonella enterica strain PNUSAS356507 SAMN35773561-rid18411593.denovo.24, whole genome shotgun sequence	29386..29647																																																avrA	ABOAOW010000004.1	175018..175886	100	869	0						
GCA_032813385.1_PDT001781084.1_genomic.fna	Salmonella_enterica	0.5214	238.662 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAOX010000002.1 Salmonella enterica strain PNUSAS356508 SAMN35773558-rid18411583.denovo.02, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAOX010000048.1 Salmonella enterica strain PNUSAS356508 SAMN35773558-rid18411583.guided.33, whole genome shotgun sequence	13038..13475	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOAOX010000007.1	154652..155520	99.77	870	0						
GCA_032813405.1_PDT001781082.1_genomic.fna	Salmonella_enterica	0.5211	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAOZ010000001.1 Salmonella enterica strain PNUSAS356506 SAMN35773565-rid18411563.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAOZ010000025.1 Salmonella enterica strain PNUSAS356506 SAMN35773565-rid18411563.guided.16, whole genome shotgun sequence	2812..3249	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAOZ010000018.1 Salmonella enterica strain PNUSAS356506 SAMN35773565-rid18411563.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOAOZ010000015.1 Salmonella enterica strain PNUSAS356506 SAMN35773565-rid18411563.denovo.15, whole genome shotgun sequence	37108..37369																																																avrA	ABOAOZ010000002.1	553636..554505	99.54	870	0						
GCA_032813425.1_PDT001781083.1_genomic.fna	Salmonella_enterica	0.5213	490.198 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAOY010000001.1 Salmonella enterica strain PNUSAS356498 SAMN35773567-rid18411573.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAOY010000024.1 Salmonella enterica strain PNUSAS356498 SAMN35773567-rid18411573.guided.17, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAOY010000014.1 Salmonella enterica strain PNUSAS356498 SAMN35773567-rid18411573.denovo.14, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOAOY010000015.1 Salmonella enterica strain PNUSAS356498 SAMN35773567-rid18411573.denovo.18, whole genome shotgun sequence	3392..3653																																																avrA	ABOAOY010000002.1	553181..554050	99.54	870	0						
GCA_032813445.1_PDT001781081.1_genomic.fna	Salmonella_enterica	0.5211	489.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAPA010000001.1 Salmonella enterica strain PNUSAS356514 SAMN35773559-rid18411553.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAPA010000025.1 Salmonella enterica strain PNUSAS356514 SAMN35773559-rid18411553.guided.15, whole genome shotgun sequence	11141..11578	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAPA010000018.1 Salmonella enterica strain PNUSAS356514 SAMN35773559-rid18411553.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOAPA010000019.1 Salmonella enterica strain PNUSAS356514 SAMN35773559-rid18411553.denovo.22, whole genome shotgun sequence	3403..3664																																																avrA	ABOAPA010000002.1	553648..554517	99.54	870	0						
GCA_032813465.1_PDT001781080.1_genomic.fna	Salmonella_enterica	0.5219	219.474 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAPB010000001.1 Salmonella enterica strain PNUSAS356511 SAMN35773562-rid18411543.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAPB010000053.1 Salmonella enterica strain PNUSAS356511 SAMN35773562-rid18411543.guided.39, whole genome shotgun sequence	5665..6102	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABOAPB010000039.1 Salmonella enterica strain PNUSAS356511 SAMN35773562-rid18411543.denovo.42, whole genome shotgun sequence	3981..4111																																																						avrA	ABOAPB010000004.1	97953..98821	99.77	870	0						
GCA_032813485.1_PDT001781079.1_genomic.fna	Salmonella_enterica	0.5203	696.248 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAPC010000001.1 Salmonella enterica strain PNUSAS356502 SAMN35773556-rid18411533.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAPC010000021.1 Salmonella enterica strain PNUSAS356502 SAMN35773556-rid18411533.guided.13, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032813505.1_PDT001781078.1_genomic.fna	Salmonella_enterica	0.5215	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAPE010000001.1 Salmonella enterica strain PNUSAS356512 SAMN35773568-rid18411523.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAPE010000024.1 Salmonella enterica strain PNUSAS356512 SAMN35773568-rid18411523.guided.19, whole genome shotgun sequence	2736..3173	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABOAPE010000002.1	553642..554511	99.54	870	0						
GCA_032813525.1_PDT001781073.1_genomic.fna	Salmonella_enterica	0.5217	487.696 KB	4	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOAPG010000001.1 Salmonella enterica strain PNUSAS356479 SAMN35766179-rid18407243.denovo.01, whole genome shotgun sequence	492090..492527	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOAPG010000048.1 Salmonella enterica strain PNUSAS356479 SAMN35766179-rid18407243.guided.20, whole genome shotgun sequence	2657..3094	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAPG010000002.1	575031..575899	99.655	869	0						
GCA_032813555.1_PDT001781072.1_genomic.fna	Salmonella_enterica	0.5215	274.448 KB	7	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOAPF010000013.1 Salmonella enterica strain PNUSAS356497 SAMN35766387-rid18407233.denovo.13, whole genome shotgun sequence	70814..71251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOAPF010000032.1 Salmonella enterica strain PNUSAS356497 SAMN35766387-rid18407233.guided.21, whole genome shotgun sequence	6506..6943	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAPF010000009.1	95587..96456	98.966	870	0						
GCA_032813605.1_PDT001781070.1_genomic.fna	Salmonella_enterica	0.5224	307.044 KB	6	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	7	aac(6')-Iaa,aph(6)-Id,aph(3')-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Id,aph(3'')-Ib,qnrB19,qnrB19,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncQ1,IncQ1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOAPJ010000002.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.denovo.02, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAPJ010000028.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.denovo.31, whole genome shotgun sequence	10516..11352	Streptomycin	M28829	aph(3')-Id	99.51	817/816	ABOAPJ010000028.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.denovo.31, whole genome shotgun sequence	1291..2106	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	Z48231	aph(3'')-Ib	100	780/804	ABOAPJ010000028.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.denovo.31, whole genome shotgun sequence	11352..12131	Streptomycin	AF321551	aac(6')-Iaa	99.77	438/438	ABOAPJ010000042.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.guided.29, whole genome shotgun sequence	11992..12429	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAPJ010000043.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.guided.32, whole genome shotgun sequence	8387..9223	Streptomycin	M28829	aph(3')-Id	99.51	817/816	ABOAPJ010000043.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.guided.32, whole genome shotgun sequence	5502..6317	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	Z48231	aph(3'')-Ib	100	804/804	ABOAPJ010000043.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.guided.32, whole genome shotgun sequence	7584..8387	Streptomycin	AF321551	qnrB19	100	645/645	ABOAPJ010000035.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.denovo.39, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOAPJ010000044.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.guided.41, whole genome shotgun sequence	93..737	Ciprofloxacin	EU432277	sul2	100	816/816	ABOAPJ010000028.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.denovo.31, whole genome shotgun sequence	85..900	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOAPJ010000043.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.guided.32, whole genome shotgun sequence	6708..7523	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOAPJ010000028.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.denovo.31, whole genome shotgun sequence	7972..9246	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOAPJ010000043.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.guided.32, whole genome shotgun sequence	10493..11767	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOAPJ010000032.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.denovo.36, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOAPJ010000035.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.denovo.39, whole genome shotgun sequence	1150..1280		enterobacteriales	IncQ1	100	796 / 796	ABOAPJ010000028.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.denovo.31, whole genome shotgun sequence	3450..4245		enterobacteriales	IncQ1	100	796 / 796	ABOAPJ010000043.1 Salmonella enterica strain PNUSAS356496 SAMN35766388-rid18407213.guided.32, whole genome shotgun sequence	3363..4158																																		avrA	ABOAPJ010000019.1	36962..37831	99.425	870	0						
GCA_032813665.1_PDT001781067.1_genomic.fna	Salmonella_enterica	0.5211	477.511 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAPN010000001.1 Salmonella enterica strain PNUSAS356478 SAMN35766180-rid18407183.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAPN010000030.1 Salmonella enterica strain PNUSAS356478 SAMN35766180-rid18407183.guided.19, whole genome shotgun sequence	7085..7522	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAPN010000014.1 Salmonella enterica strain PNUSAS356478 SAMN35766180-rid18407183.denovo.14, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOAPN010000018.1 Salmonella enterica strain PNUSAS356478 SAMN35766180-rid18407183.denovo.21, whole genome shotgun sequence	3399..3660																																																avrA	ABOAPN010000002.1	553636..554505	99.54	870	0						
GCA_032813685.1_PDT001781068.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAPM010000001.1 Salmonella enterica strain PNUSAS356477 SAMN35766386-rid18407193.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAPM010000029.1 Salmonella enterica strain PNUSAS356477 SAMN35766386-rid18407193.guided.19, whole genome shotgun sequence	5644..6081	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAPM010000017.1 Salmonella enterica strain PNUSAS356477 SAMN35766386-rid18407193.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOAPM010000014.1 Salmonella enterica strain PNUSAS356477 SAMN35766386-rid18407193.denovo.14, whole genome shotgun sequence	1777..2038																																																avrA	ABOAPM010000002.1	553635..554504	99.54	870	0						
GCA_032813745.1_PDT001781063.1_genomic.fna	Salmonella_enterica	0.521	480.935 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAPP010000001.1 Salmonella enterica strain PNUSAS356475 SAMN35765952-rid18407143.denovo.01, whole genome shotgun sequence	293255..293692	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAPP010000023.1 Salmonella enterica strain PNUSAS356475 SAMN35765952-rid18407143.guided.14, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAPP010000016.1 Salmonella enterica strain PNUSAS356475 SAMN35765952-rid18407143.denovo.19, whole genome shotgun sequence	6848..7490	enterobacteriales	IncFII(S)	100	262 / 262	ABOAPP010000017.1 Salmonella enterica strain PNUSAS356475 SAMN35765952-rid18407143.denovo.20, whole genome shotgun sequence	3397..3658																																																avrA	ABOAPP010000002.1	553648..554517	99.54	870	0						
GCA_032813785.1_PDT001781061.1_genomic.fna	Salmonella_enterica	0.5206	384.457 KB	4	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOAPR010000001.1 Salmonella enterica strain PNUSAS356474 SAMN35765951-rid18407123.denovo.01, whole genome shotgun sequence	520592..521029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOAPR010000031.1 Salmonella enterica strain PNUSAS356474 SAMN35765951-rid18407123.guided.21, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAPR010000007.1	160466..161334	99.425	870	0						
GCA_032813825.1_PDT001781058.1_genomic.fna	Salmonella_enterica	0.5212	406.409 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAPT010000004.1 Salmonella enterica strain PNUSAS356389 SAMN35761623-rid18407093.denovo.04, whole genome shotgun sequence	200059..200496	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAPT010000036.1 Salmonella enterica strain PNUSAS356389 SAMN35761623-rid18407093.guided.26, whole genome shotgun sequence	2690..3127	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAPT010000020.1 Salmonella enterica strain PNUSAS356389 SAMN35761623-rid18407093.denovo.20, whole genome shotgun sequence	5051..5693	enterobacteriales	IncFII(S)	100	262 / 262	ABOAPT010000022.1 Salmonella enterica strain PNUSAS356389 SAMN35761623-rid18407093.denovo.22, whole genome shotgun sequence	3268..3529																																																avrA	ABOAPT010000001.1	505310..506179	99.54	870	0						
GCA_032813845.1_PDT001781057.1_genomic.fna	Salmonella_enterica	0.5211	477.277 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAPV010000001.1 Salmonella enterica strain PNUSAS356473 SAMN35765953-rid18407083.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAPV010000024.1 Salmonella enterica strain PNUSAS356473 SAMN35765953-rid18407083.guided.14, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAPV010000017.1 Salmonella enterica strain PNUSAS356473 SAMN35765953-rid18407083.denovo.20, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABOAPV010000018.1 Salmonella enterica strain PNUSAS356473 SAMN35765953-rid18407083.denovo.21, whole genome shotgun sequence	3341..3602																																																avrA	ABOAPV010000002.1	553414..554283	99.54	870	0						
GCA_032815865.1_PDT001780956.1_genomic.fna	Salmonella_enterica	0.5197	106.234 KB	17	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOATP010000013.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32309722 SAMN35766124-rid18406123.denovo.013, whole genome shotgun sequence	31681..32118	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOATP010000118.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32309722 SAMN35766124-rid18406123.guided.047, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOATP010000080.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32309722 SAMN35766124-rid18406123.denovo.083, whole genome shotgun sequence	557..687	enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOATP010000065.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32309722 SAMN35766124-rid18406123.denovo.068, whole genome shotgun sequence	4646..5179																																																avrA	ABOATP010000041.1	39350..40219	99.54	870	0						
GCA_032815945.1_PDT001780953.1_genomic.fna	Salmonella_enterica	0.5225	341.282 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOATU010000001.1 Salmonella enterica strain PNUSAS356391 SAMN35761876-rid18406093.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOATU010000038.1 Salmonella enterica strain PNUSAS356391 SAMN35761876-rid18406093.guided.30, whole genome shotgun sequence	2435..2872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOATU010000025.1 Salmonella enterica strain PNUSAS356391 SAMN35761876-rid18406093.denovo.26, whole genome shotgun sequence	1506..1636																																																						avrA	ABOATU010000007.1	39350..40219	98.966	870	0						
GCA_032816005.1_PDT001780950.1_genomic.fna	Salmonella_enterica	0.5214	285.458 KB	5	aroC_50,dnaN_63,hemD_25,hisD_72,purE_59,sucA_292,thrA_63	1515	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_63	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_59	sucA	100	100	sucA_292	thrA	100	100	thrA_63	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOATY010000003.1 Salmonella enterica strain PNUSAS356390 SAMN35761626-rid18405113.denovo.03, whole genome shotgun sequence	416756..417193	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOATY010000036.1 Salmonella enterica strain PNUSAS356390 SAMN35761626-rid18405113.guided.27, whole genome shotgun sequence	1725..2162	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOATY010000002.1	553204..554073	99.425	870	0						
GCA_032816025.1_PDT001780949.1_genomic.fna	Salmonella_enterica	0.5213	229.297 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOATZ010000001.1 Salmonella enterica strain PNUSAS356456 SAMN35759664-rid18406083.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOATZ010000045.1 Salmonella enterica strain PNUSAS356456 SAMN35759664-rid18406083.guided.31, whole genome shotgun sequence	8026..8463	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOATZ010000026.1 Salmonella enterica strain PNUSAS356456 SAMN35759664-rid18406083.denovo.27, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABOATZ010000026.1 Salmonella enterica strain PNUSAS356456 SAMN35759664-rid18406083.denovo.27, whole genome shotgun sequence	9325..9586																																																avrA	ABOATZ010000002.1	209366..210235	99.885	870	0						
GCA_032817905.1_PDT001780864.1_genomic.fna	Salmonella_enterica	0.5213	173.096 KB	10	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAXF010000001.1 Salmonella enterica strain PNUSAS356453 SAMN35759653-rid18406893.denovo.01, whole genome shotgun sequence	151390..151827	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAXF010000050.1 Salmonella enterica strain PNUSAS356453 SAMN35759653-rid18406893.guided.40, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABOAXF010000027.1 Salmonella enterica strain PNUSAS356453 SAMN35759653-rid18406893.denovo.27, whole genome shotgun sequence	14235..14877																																																																	
GCA_032817985.1_PDT001780856.1_genomic.fna	Salmonella_enterica	0.5218	98.347 KB	16	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAXI010000003.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309724 SAMN35766163-rid18405343.denovo.03, whole genome shotgun sequence	47072..47509	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAXI010000098.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309724 SAMN35766163-rid18405343.guided.34, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAXI010000066.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309724 SAMN35766163-rid18405343.denovo.69, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOAXI010000072.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309724 SAMN35766163-rid18405343.denovo.75, whole genome shotgun sequence	3398..3659																																																avrA	ABOAXI010000009.1	61533..62402	99.54	870	0						
GCA_032818005.1_PDT001780855.1_genomic.fna	Salmonella_enterica	0.5215	89.994 KB	19	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAXJ010000002.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.denovo.002, whole genome shotgun sequence	48278..48715	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAXJ010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.denovo.046, whole genome shotgun sequence	28247..29083	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOAXJ010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.denovo.046, whole genome shotgun sequence	27444..28247	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOAXJ010000104.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.denovo.112, whole genome shotgun sequence	136..951	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aph(6)-Id	100	837/837	ABOAXJ010000122.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.guided.052, whole genome shotgun sequence	28288..29124	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOAXJ010000122.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.guided.052, whole genome shotgun sequence	27485..28288	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOAXJ010000123.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.guided.056, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOAXJ010000129.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.guided.111, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	blaTEM-214	100	824/861	ABOAXJ010000084.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.denovo.088, whole genome shotgun sequence	3299..4122	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOAXJ010000084.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.denovo.088, whole genome shotgun sequence	3299..4122	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOAXJ010000084.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.denovo.088, whole genome shotgun sequence	3299..4122	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOAXJ010000095.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.denovo.101, whole genome shotgun sequence	116..1261	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOAXJ010000127.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.guided.099, whole genome shotgun sequence	157..1302	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOAXJ010000128.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.guided.106, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOAXJ010000128.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.guided.106, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOAXJ010000128.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.guided.106, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABOAXJ010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.denovo.046, whole genome shotgun sequence	32219..33432	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOAXJ010000126.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.guided.089, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOAXJ010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.denovo.046, whole genome shotgun sequence	26568..27383	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOAXJ010000122.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.guided.052, whole genome shotgun sequence	26609..27424	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOAXJ010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.denovo.046, whole genome shotgun sequence	30344..31618	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOAXJ010000122.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.guided.052, whole genome shotgun sequence	30385..31659	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																														gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABOAXJ010000040.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.denovo.040, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOAXJ010000055.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.denovo.057, whole genome shotgun sequence	1145..1404		enterobacteriales	IncX1	98.66	374 / 374	ABOAXJ010000112.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS32309723 SAMN35766125-rid18405003.denovo.120, whole genome shotgun sequence	225..598																																									avrA	ABOAXJ010000013.1	28292..29160	99.54	870	0						
GCA_032818025.1_PDT001780853.1_genomic.fna	Salmonella_enterica	0.5199	118.377 KB	13	aroC_140,dnaN_105,hemD_85,hisD_93,purE_14,sucA_10,thrA_3	440	35:f,g:-	4	aac(6')-Iaa,aadA7,aac(6')-Iaa,aadA7,sul1,sul1,tet(B),tet(B)	1	parC_p.T57S	2	IncHI2,IncHI2A	aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_85	hisD	100	100	hisD_93	purE	100	100	purE_14	sucA	100	100	sucA_10	thrA	100	100	thrA_3	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAXK010000001.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309720 SAMN35766122-rid18404993.denovo.01, whole genome shotgun sequence	40740..41177	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	ABOAXK010000034.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309720 SAMN35766122-rid18404993.denovo.34, whole genome shotgun sequence	7324..8121	Spectinomycin, Streptomycin	AF224733	aac(6')-Iaa	97.95	438/438	ABOAXK010000089.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309720 SAMN35766122-rid18404993.guided.51, whole genome shotgun sequence	15075..15512	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	ABOAXK010000091.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309720 SAMN35766122-rid18404993.guided.64, whole genome shotgun sequence	2402..3199	Spectinomycin, Streptomycin	AF224733	sul1	100	840/840	ABOAXK010000034.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309720 SAMN35766122-rid18404993.denovo.34, whole genome shotgun sequence	5980..6819	Sulfamethoxazole	U12338	sul1	100	840/840	ABOAXK010000091.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309720 SAMN35766122-rid18404993.guided.64, whole genome shotgun sequence	3704..4543	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABOAXK010000069.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309720 SAMN35766122-rid18404993.denovo.73, whole genome shotgun sequence	2275..3480	Doxycycline, Tetracycline, Minocycline	AP000342	tet(B)	100	1206/1206	ABOAXK010000092.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309720 SAMN35766122-rid18404993.guided.75, whole genome shotgun sequence	2306..3511	Doxycycline, Tetracycline, Minocycline	AP000342																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOAXK010000039.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309720 SAMN35766122-rid18404993.denovo.39, whole genome shotgun sequence	20873..21199	enterobacteriales	IncHI2A	100	630 / 630	ABOAXK010000064.1 Salmonella enterica subsp. enterica serovar Adelaide strain FSIS32309720 SAMN35766122-rid18404993.denovo.68, whole genome shotgun sequence	1583..2212																																																											
GCA_032818045.1_PDT001780852.1_genomic.fna	Salmonella_enterica	0.5213	96.255 KB	17	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		5	Col(pHAD28),Col440I,Col440I,ColRNAI,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAXO010000026.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.denovo.026, whole genome shotgun sequence	15511..15948	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAXO010000093.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.denovo.097, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOAXO010000093.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.denovo.097, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOAXO010000146.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.guided.070, whole genome shotgun sequence	8826..9263	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOAXO010000147.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.guided.094, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOAXO010000147.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.guided.094, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOAXO010000113.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.denovo.119, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOAXO010000149.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.guided.116, whole genome shotgun sequence	557..1417	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOAXO010000093.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.denovo.097, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOAXO010000147.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.guided.094, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOAXO010000072.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.denovo.075, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOAXO010000148.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.guided.105, whole genome shotgun sequence	1632..2837	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOAXO010000099.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.denovo.103, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABOAXO010000092.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.denovo.096, whole genome shotgun sequence	3175..3285		enterobacteriales	Col440I	93.64	110 / 114	ABOAXO010000102.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.denovo.107, whole genome shotgun sequence	1568..1677		enterobacteriales	ColRNAI	90.08	131 / 130	ABOAXO010000090.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.denovo.093, whole genome shotgun sequence	3981..4111		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOAXO010000086.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.denovo.089, whole genome shotgun sequence	2150..2831		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOAXO010000047.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS32309721 SAMN35766123-rid18405333.denovo.048, whole genome shotgun sequence	30999..31495																				avrA	ABOAXO010000009.1	87759..88628	99.885	870	0						
GCA_032818065.1_PDT001780854.1_genomic.fna	Salmonella_enterica	0.5183	134.901 KB	11	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	9,46:e,h:1,6	8	aac(6')-Iaa,aph(4)-Ia,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(4)-Ia,aac(3)-IV,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,qnrB19,qnrB19,tet(C),tet(B),tet(C),tet(B)	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),ColE10,ColE10,IncHI2,IncHI2A	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	9,46	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I 9,46:e,h:1,6	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOAXL010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.denovo.001, whole genome shotgun sequence	375384..375821	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOAXL010000032.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.denovo.032, whole genome shotgun sequence	5089..6114	Hygromycin	V01499	aph(6)-Id	100	837/837	ABOAXL010000032.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.denovo.032, whole genome shotgun sequence	9911..10747	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOAXL010000032.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.denovo.032, whole genome shotgun sequence	9109..9911	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOAXL010000032.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.denovo.032, whole genome shotgun sequence	9108..9911	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOAXL010000032.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.denovo.032, whole genome shotgun sequence	9108..9911	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOAXL010000032.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.denovo.032, whole genome shotgun sequence	9108..9911	Streptomycin	AF321550	aac(3)-IV	100	777/777	ABOAXL010000032.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.denovo.032, whole genome shotgun sequence	6343..7119	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	99.09	438/438	ABOAXL010000099.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.guided.039, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOAXL010000103.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.guided.072, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOAXL010000103.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.guided.072, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	aph(4)-Ia	100	1026/1026	ABOAXL010000104.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.guided.073, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	99.87	777/777	ABOAXL010000104.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.guided.073, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	aph(6)-Id	100	837/837	ABOAXL010000106.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.guided.082, whole genome shotgun sequence	1961..2797	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOAXL010000106.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.guided.082, whole genome shotgun sequence	1159..1961	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOAXL010000106.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.guided.082, whole genome shotgun sequence	1158..1961	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOAXL010000106.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.guided.082, whole genome shotgun sequence	1158..1961	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOAXL010000106.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.guided.082, whole genome shotgun sequence	1158..1961	Streptomycin	AF321550	qnrB19	100	645/645	ABOAXL010000075.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.denovo.084, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOAXL010000107.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.guided.083, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	tet(C)	99.83	1191/1191	ABOAXL010000062.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.denovo.065, whole genome shotgun sequence	1428..2618	Doxycycline, Tetracycline	AF055345	tet(B)	100	1206/1206	ABOAXL010000073.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.denovo.080, whole genome shotgun sequence	2287..3492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(C)	99.83	1191/1191	ABOAXL010000102.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.guided.066, whole genome shotgun sequence	1469..2659	Doxycycline, Tetracycline	AF055345	tet(B)	100	1206/1206	ABOAXL010000105.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.guided.079, whole genome shotgun sequence	2318..3523	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOAXL010000075.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.denovo.084, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOAXL010000107.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.guided.083, whole genome shotgun sequence	2517..2647		enterobacteriales	ColE10	100	177 / 177	ABOAXL010000062.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.denovo.065, whole genome shotgun sequence	7392..7568		enterobacteriales	ColE10	100	177 / 177	ABOAXL010000102.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.guided.066, whole genome shotgun sequence	7433..7609		enterobacteriales	IncHI2	100	327 / 327	ABOAXL010000049.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.denovo.051, whole genome shotgun sequence	6177..6503		enterobacteriales	IncHI2A	99.52	630 / 630	ABOAXL010000056.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309719 SAMN35766121-rid18406883.denovo.058, whole genome shotgun sequence	2859..3488																				avrA	ABOAXL010000002.1	130895..131764	99.54	870	0						
GCA_032818235.1_PDT001780848.1_genomic.fna	Salmonella_enterica	0.521	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAXS010000001.1 Salmonella enterica strain PNUSAS356450 SAMN35759594-rid18405293.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAXS010000026.1 Salmonella enterica strain PNUSAS356450 SAMN35759594-rid18405293.guided.16, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAXS010000018.1 Salmonella enterica strain PNUSAS356450 SAMN35759594-rid18405293.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOAXS010000019.1 Salmonella enterica strain PNUSAS356450 SAMN35759594-rid18405293.denovo.22, whole genome shotgun sequence	3391..3652																																																avrA	ABOAXS010000002.1	553575..554444	99.54	870	0						
GCA_032818355.1_PDT001780826.1_genomic.fna	Salmonella_enterica	0.5209	573.755 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAYA010000001.1 Salmonella enterica strain PNUSAS356461 SAMN35759632-rid18404823.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAYA010000024.1 Salmonella enterica strain PNUSAS356461 SAMN35759632-rid18404823.guided.16, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAYA010000016.1 Salmonella enterica strain PNUSAS356461 SAMN35759632-rid18404823.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOAYA010000017.1 Salmonella enterica strain PNUSAS356461 SAMN35759632-rid18404823.denovo.19, whole genome shotgun sequence	3413..3674																																																avrA	ABOAYA010000002.1	585349..586218	99.54	870	0						
GCA_032818535.1_PDT001780819.1_genomic.fna	Salmonella_enterica	0.5206	222.954 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,IncFIB(S),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAYH010000001.1 Salmonella enterica strain PNUSAS356431 SAMN35758934-rid18404763.denovo.01, whole genome shotgun sequence	207377..207814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAYH010000066.1 Salmonella enterica strain PNUSAS356431 SAMN35758934-rid18404763.guided.39, whole genome shotgun sequence	21769..22206	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	ABOAYH010000049.1 Salmonella enterica strain PNUSAS356431 SAMN35758934-rid18404763.denovo.52, whole genome shotgun sequence	965..1118	enterobacteriales	IncFIB(S)	100	643 / 643	ABOAYH010000016.1 Salmonella enterica strain PNUSAS356431 SAMN35758934-rid18404763.denovo.16, whole genome shotgun sequence	48426..49068		enterobacteriales	IncFII(S)	100	262 / 262	ABOAYH010000016.1 Salmonella enterica strain PNUSAS356431 SAMN35758934-rid18404763.denovo.16, whole genome shotgun sequence	64153..64414		enterobacteriales	IncI2(Delta)	98.42	316 / 316	ABOAYH010000026.1 Salmonella enterica strain PNUSAS356431 SAMN35758934-rid18404763.denovo.26, whole genome shotgun sequence	27144..27459																																		avrA	ABOAYH010000003.1	209042..209911	99.885	870	0						
GCA_032818775.1_PDT001780807.1_genomic.fna	Salmonella_enterica	0.5222	182.243 KB	6	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAYS010000002.1 Salmonella enterica strain PNUSAS356388 SAMN35761625-rid18404643.denovo.02, whole genome shotgun sequence	136878..137315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAYS010000036.1 Salmonella enterica strain PNUSAS356388 SAMN35761625-rid18404643.guided.30, whole genome shotgun sequence	3483..3920	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAYS010000001.1	511148..512014	99.08	870	0						
GCA_032818895.1_PDT001780801.1_genomic.fna	Salmonella_enterica	0.5206	284.094 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAYX010000001.1 Salmonella enterica strain PNUSAS356471 SAMN35760533-rid18404583.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAYX010000017.1 Salmonella enterica strain PNUSAS356471 SAMN35760533-rid18404583.denovo.17, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	ABOAYX010000022.1 Salmonella enterica strain PNUSAS356471 SAMN35760533-rid18404583.denovo.23, whole genome shotgun sequence	3393..3654		enterobacteriales	IncX1	98.93	374 / 374	ABOAYX010000019.1 Salmonella enterica strain PNUSAS356471 SAMN35760533-rid18404583.denovo.19, whole genome shotgun sequence	32011..32384																																									avrA	ABOAYX010000002.1	553362..554231	99.54	870	0						
GCA_032818915.1_PDT001780800.1_genomic.fna	Salmonella_enterica	0.5217	733.325 KB	3	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOAYZ010000002.1 Salmonella enterica strain PNUSAS356460 SAMN35759626-rid18404573.denovo.02, whole genome shotgun sequence	172301..172738	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOAYZ010000016.1 Salmonella enterica strain PNUSAS356460 SAMN35759626-rid18404573.guided.12, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAYZ010000003.1	553272..554141	99.77	870	0						
GCA_032818975.1_PDT001780797.1_genomic.fna	Salmonella_enterica	0.5193	296.296 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAZB010000001.1 Salmonella enterica strain PNUSAS356285 SAMN35751028-rid18404543.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAZB010000039.1 Salmonella enterica strain PNUSAS356285 SAMN35751028-rid18404543.guided.24, whole genome shotgun sequence	1470..1907	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOAZB010000005.1 Salmonella enterica strain PNUSAS356285 SAMN35751028-rid18404543.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOAZB010000042.1 Salmonella enterica strain PNUSAS356285 SAMN35751028-rid18404543.guided.36, whole genome shotgun sequence	417..839	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAZB010000002.1	173924..174793	99.195	870	0						
GCA_032818995.1_PDT001780796.1_genomic.fna	Salmonella_enterica	0.5213	306.504 KB	6	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncR,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOAZE010000008.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.denovo.08, whole genome shotgun sequence	124003..124440	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOAZE010000027.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.denovo.30, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOAZE010000043.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.guided.31, whole genome shotgun sequence	2684..3121	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOAZE010000045.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.guided.35, whole genome shotgun sequence	2772..3551	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOAZE010000027.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.denovo.30, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOAZE010000045.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.guided.35, whole genome shotgun sequence	1776..2642	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOAZE010000025.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.denovo.28, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOAZE010000042.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.guided.27, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOAZE010000024.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.denovo.26, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOAZE010000044.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.guided.34, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOAZE010000027.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.denovo.30, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOAZE010000045.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.guided.35, whole genome shotgun sequence	860..1516	Ciprofloxacin	AY070235	sul1	100	840/840	ABOAZE010000031.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.denovo.39, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOAZE010000047.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.guided.38, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOAZE010000024.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.denovo.26, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOAZE010000046.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.guided.36, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOAZE010000024.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.denovo.26, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOAZE010000046.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.guided.36, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOAZE010000022.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.denovo.23, whole genome shotgun sequence	4434..4684	enterobacteriales	IncX1	94.92	374 / 374	ABOAZE010000017.1 Salmonella enterica strain PNUSAS356472 SAMN35760531-rid18404533.denovo.17, whole genome shotgun sequence	13796..14169																																																avrA	ABOAZE010000001.1	553473..554342	99.77	870	0						
GCA_032819095.1_PDT001780793.1_genomic.fna	Salmonella_enterica	0.5201	390.337 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAZI010000001.1 Salmonella enterica strain PNUSAS356292 SAMN35751058-rid18404503.denovo.01, whole genome shotgun sequence	643804..644241	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAZI010000026.1 Salmonella enterica strain PNUSAS356292 SAMN35751058-rid18404503.guided.18, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032819135.1_PDT001780788.1_genomic.fna	Salmonella_enterica	0.5215	329.418 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOAZJ010000003.1 Salmonella enterica strain PNUSAS356278 SAMN35751040-rid18404453.denovo.03, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOAZJ010000047.1 Salmonella enterica strain PNUSAS356278 SAMN35751040-rid18404453.guided.29, whole genome shotgun sequence	8818..9255	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOAZJ010000016.1 Salmonella enterica strain PNUSAS356278 SAMN35751040-rid18404453.denovo.16, whole genome shotgun sequence	48459..49101	enterobacteriales	IncFII(S)	100	262 / 262	ABOAZJ010000016.1 Salmonella enterica strain PNUSAS356278 SAMN35751040-rid18404453.denovo.16, whole genome shotgun sequence	64186..64447		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOAZJ010000017.1 Salmonella enterica strain PNUSAS356278 SAMN35751040-rid18404453.denovo.17, whole genome shotgun sequence	76345..76486																																									avrA	ABOAZJ010000006.1	155216..156084	100	869	0						
GCA_032819155.1_PDT001780787.1_genomic.fna	Salmonella_enterica	0.5204	406.457 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAZK010000001.1 Salmonella enterica strain PNUSAS356470 SAMN35760535-rid18404443.denovo.01, whole genome shotgun sequence	774531..774968	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAZK010000027.1 Salmonella enterica strain PNUSAS356470 SAMN35760535-rid18404443.guided.23, whole genome shotgun sequence	2866..3303	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAZK010000019.1 Salmonella enterica strain PNUSAS356470 SAMN35760535-rid18404443.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOAZK010000016.1 Salmonella enterica strain PNUSAS356470 SAMN35760535-rid18404443.denovo.16, whole genome shotgun sequence	5781..6042		enterobacteriales	IncX1	98.13	374 / 377	ABOAZK010000015.1 Salmonella enterica strain PNUSAS356470 SAMN35760535-rid18404443.denovo.15, whole genome shotgun sequence	31782..32155																																									avrA	ABOAZK010000002.1	553503..554372	99.54	870	0						
GCA_032819175.1_PDT001780786.1_genomic.fna	Salmonella_enterica	0.5205	308.31 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOAZL010000001.1 Salmonella enterica strain PNUSAS356283 SAMN35751049-rid18404433.denovo.01, whole genome shotgun sequence	485091..485528	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOAZL010000039.1 Salmonella enterica strain PNUSAS356283 SAMN35751049-rid18404433.guided.20, whole genome shotgun sequence	35772..36209	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOAZL010000003.1 Salmonella enterica strain PNUSAS356283 SAMN35751049-rid18404433.denovo.03, whole genome shotgun sequence	388916..389338	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOAZL010000042.1 Salmonella enterica strain PNUSAS356283 SAMN35751049-rid18404433.guided.32, whole genome shotgun sequence	2833..3255	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAZL010000002.1	122302..123171	99.195	870	0						
GCA_032819255.1_PDT001780781.1_genomic.fna	Salmonella_enterica	0.5221	473.294 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOAZP010000001.1 Salmonella enterica strain PNUSAS356265 SAMN35749935-rid18404383.denovo.01, whole genome shotgun sequence	666959..667396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOAZP010000027.1 Salmonella enterica strain PNUSAS356265 SAMN35749935-rid18404383.guided.15, whole genome shotgun sequence	26676..27113	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOAZP010000005.1	39553..40422	99.31	870	0						
GCA_032819275.1_PDT001780779.1_genomic.fna	Salmonella_enterica	0.521	333.002 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-65,blaCTX-M-65	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAZS010000001.1 Salmonella enterica strain PNUSAS356455 SAMN35759659-rid18404363.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAZS010000051.1 Salmonella enterica strain PNUSAS356455 SAMN35759659-rid18404363.guided.36, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	blaCTX-M-65	100	876/876	ABOAZS010000027.1 Salmonella enterica strain PNUSAS356455 SAMN35759659-rid18404363.denovo.28, whole genome shotgun sequence	25446..26321	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOAZS010000052.1 Salmonella enterica strain PNUSAS356455 SAMN35759659-rid18404363.guided.44, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOAZS010000027.1 Salmonella enterica strain PNUSAS356455 SAMN35759659-rid18404363.denovo.28, whole genome shotgun sequence	9109..9668																																																						avrA	ABOAZS010000003.1	94085..94954	99.655	870	0						
GCA_032819295.1_PDT001780780.1_genomic.fna	Salmonella_enterica	0.5212	406.648 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAZQ010000001.1 Salmonella enterica strain PNUSAS356465 SAMN35759643-rid18404373.denovo.01, whole genome shotgun sequence	414159..414596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAZQ010000035.1 Salmonella enterica strain PNUSAS356465 SAMN35759643-rid18404373.guided.24, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAZQ010000012.1	93874..94742	99.195	870	0						
GCA_032819355.1_PDT001780774.1_genomic.fna	Salmonella_enterica	0.5211	489.886 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOAZV010000001.1 Salmonella enterica strain PNUSAS356457 SAMN35759605-rid18404953.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOAZV010000020.1 Salmonella enterica strain PNUSAS356457 SAMN35759605-rid18404953.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOAZV010000008.1 Salmonella enterica strain PNUSAS356457 SAMN35759605-rid18404953.denovo.08, whole genome shotgun sequence	181593..182235	enterobacteriales	IncFII(S)	100	262 / 262	ABOAZV010000016.1 Salmonella enterica strain PNUSAS356457 SAMN35759605-rid18404953.denovo.18, whole genome shotgun sequence	3415..3676																																																avrA	ABOAZV010000002.1	553635..554504	99.54	870	0						
GCA_032819375.1_PDT001780777.1_genomic.fna	Salmonella_enterica	0.5212	430.367 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOAZT010000001.1 Salmonella enterica strain PNUSAS356452 SAMN35759674-rid18404343.denovo.01, whole genome shotgun sequence	407341..407778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOAZT010000032.1 Salmonella enterica strain PNUSAS356452 SAMN35759674-rid18404343.guided.20, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOAZT010000002.1	514725..515593	99.195	870	0						
GCA_032819475.1_PDT001780772.1_genomic.fna	Salmonella_enterica	0.5213	341.24 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOAZZ010000001.1 Salmonella enterica strain PNUSAS356454 SAMN35759668-rid18404313.denovo.01, whole genome shotgun sequence	207389..207826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOAZZ010000048.1 Salmonella enterica strain PNUSAS356454 SAMN35759668-rid18404313.guided.19, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOAZZ010000022.1 Salmonella enterica strain PNUSAS356454 SAMN35759668-rid18404313.denovo.23, whole genome shotgun sequence	44724..45366	enterobacteriales	IncFII(S)	100	262 / 262	ABOAZZ010000022.1 Salmonella enterica strain PNUSAS356454 SAMN35759668-rid18404313.denovo.23, whole genome shotgun sequence	29378..29639																																																avrA	ABOAZZ010000002.1	450793..451662	99.885	870	0						
GCA_032819515.1_PDT001780773.1_genomic.fna	Salmonella_enterica	0.522	202.297 KB	10	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOAZW010000002.1 Salmonella enterica strain PNUSAS356464 SAMN35759649-rid18404323.denovo.02, whole genome shotgun sequence	144280..144717	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOAZW010000047.1 Salmonella enterica strain PNUSAS356464 SAMN35759649-rid18404323.guided.34, whole genome shotgun sequence	3642..4079	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032819525.1_PDT001780771.1_genomic.fna	Salmonella_enterica	0.5202	143.222 KB	11	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOAZY010000006.1 Salmonella enterica strain PNUSAS356462 SAMN35759599-rid18404303.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOAZY010000072.1 Salmonella enterica strain PNUSAS356462 SAMN35759599-rid18404303.guided.45, whole genome shotgun sequence	8790..9224	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncX1	97.86	374 / 374	ABOAZY010000042.1 Salmonella enterica strain PNUSAS356462 SAMN35759599-rid18404303.denovo.43, whole genome shotgun sequence	14640..15013																																																																	
GCA_032819575.1_PDT001780769.1_genomic.fna	Salmonella_enterica	0.5216	219.187 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBAA010000001.1 Salmonella enterica strain PNUSAS356463 SAMN35759637-rid18404283.denovo.01, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBAA010000050.1 Salmonella enterica strain PNUSAS356463 SAMN35759637-rid18404283.guided.27, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBAA010000026.1 Salmonella enterica strain PNUSAS356463 SAMN35759637-rid18404283.denovo.26, whole genome shotgun sequence	44723..45365	enterobacteriales	IncFII(S)	100	262 / 262	ABOBAA010000026.1 Salmonella enterica strain PNUSAS356463 SAMN35759637-rid18404283.denovo.26, whole genome shotgun sequence	29377..29638		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBAA010000021.1 Salmonella enterica strain PNUSAS356463 SAMN35759637-rid18404283.denovo.21, whole genome shotgun sequence	68647..68788																																									avrA	ABOBAA010000003.1	209589..210457	100	869	0						
GCA_032819655.1_PDT001780768.1_genomic.fna	Salmonella_enterica	0.522	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBAB010000003.1 Salmonella enterica strain PNUSAS356258 SAMN35749926-rid18404273.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBAB010000038.1 Salmonella enterica strain PNUSAS356258 SAMN35749926-rid18404273.guided.26, whole genome shotgun sequence	39457..39894	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBAB010000015.1 Salmonella enterica strain PNUSAS356258 SAMN35749926-rid18404273.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOBAB010000015.1 Salmonella enterica strain PNUSAS356258 SAMN35749926-rid18404273.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABOBAB010000005.1	174649..175517	100	869	0						
GCA_032819715.1_PDT001780766.1_genomic.fna	Salmonella_enterica	0.5222	682.831 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOBAD010000001.1 Salmonella enterica strain PNUSAS356458 SAMN35759616-rid18404943.denovo.01, whole genome shotgun sequence	486957..487394	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOBAD010000020.1 Salmonella enterica strain PNUSAS356458 SAMN35759616-rid18404943.guided.12, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBAD010000002.1	544655..545523	99.425	870	0						
GCA_032819755.1_PDT001780765.1_genomic.fna	Salmonella_enterica	0.5215	727.347 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOBAE010000001.1 Salmonella enterica strain PNUSAS356451 SAMN35759611-rid18404253.denovo.01, whole genome shotgun sequence	596407..596844	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOBAE010000019.1 Salmonella enterica strain PNUSAS356451 SAMN35759611-rid18404253.guided.15, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBAE010000003.1	544677..545545	99.425	870	0						
GCA_032819775.1_PDT001780767.1_genomic.fna	Salmonella_enterica	0.5212	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBAC010000001.1 Salmonella enterica strain PNUSAS356366 SAMN35754530-rid18404263.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBAC010000022.1 Salmonella enterica strain PNUSAS356366 SAMN35754530-rid18404263.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBAC010000016.1 Salmonella enterica strain PNUSAS356366 SAMN35754530-rid18404263.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOBAC010000017.1 Salmonella enterica strain PNUSAS356366 SAMN35754530-rid18404263.denovo.20, whole genome shotgun sequence	3390..3651																																																avrA	ABOBAC010000002.1	553636..554505	99.54	870	0						
GCA_032819875.1_PDT001780763.1_genomic.fna	Salmonella_enterica	0.5215	666.543 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBAG010000001.1 Salmonella enterica strain PNUSAS356459 SAMN35759621-rid18404243.denovo.01, whole genome shotgun sequence	613027..613464	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBAG010000026.1 Salmonella enterica strain PNUSAS356459 SAMN35759621-rid18404243.guided.13, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBAG010000003.1	514966..515834	99.195	870	0						
GCA_032819955.1_PDT001780755.1_genomic.fna	Salmonella_enterica	0.5223	589.466 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	7	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,qnrB19,qnrB19,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOBAK010000004.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.denovo.04, whole genome shotgun sequence	172127..172564	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOBAK010000029.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.guided.19, whole genome shotgun sequence	12447..12884	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABOBAK010000017.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.denovo.20, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOBAK010000031.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.guided.25, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOBAK010000017.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.denovo.20, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOBAK010000032.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.guided.26, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABOBAK010000022.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.denovo.29, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOBAK010000033.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.guided.28, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul1	100	840/840	ABOBAK010000017.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.denovo.20, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABOBAK010000030.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.guided.23, whole genome shotgun sequence	1781..2620	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOBAK010000017.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.denovo.20, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOBAK010000030.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.guided.23, whole genome shotgun sequence	5296..6570	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOBAK010000017.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.denovo.20, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABOBAK010000030.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.guided.23, whole genome shotgun sequence	3665..4138	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOBAK010000022.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.denovo.29, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOBAK010000033.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.guided.28, whole genome shotgun sequence	2145..2275		enterobacteriales	IncR	100	251 / 251	ABOBAK010000015.1 Salmonella enterica strain PNUSAS356282 SAMN35751052-rid18404173.denovo.17, whole genome shotgun sequence	5236..5486																																									avrA	ABOBAK010000002.1	553351..554220	99.77	870	0						
GCA_032820015.1_PDT001780757.1_genomic.fna	Salmonella_enterica	0.5226	610.525 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOBAJ010000001.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.denovo.01, whole genome shotgun sequence	480419..480856	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOBAJ010000028.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.denovo.32, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOBAJ010000040.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.guided.22, whole genome shotgun sequence	15454..15891	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOBAJ010000042.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.guided.31, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOBAJ010000028.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.denovo.32, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOBAJ010000042.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.guided.31, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOBAJ010000027.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.denovo.30, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOBAJ010000043.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.guided.34, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOBAJ010000026.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.denovo.28, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOBAJ010000044.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.guided.35, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOBAJ010000028.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.denovo.32, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOBAJ010000042.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.guided.31, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOBAJ010000031.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.denovo.39, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOBAJ010000046.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.guided.38, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOBAJ010000026.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.denovo.28, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOBAJ010000045.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.guided.36, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOBAJ010000026.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.denovo.28, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOBAJ010000045.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.guided.36, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOBAJ010000022.1 Salmonella enterica strain PNUSAS356434 SAMN35758825-rid18404183.denovo.24, whole genome shotgun sequence	4434..4684																																																						avrA	ABOBAJ010000003.1	553473..554342	99.77	870	0						
GCA_032820135.1_PDT001780754.1_genomic.fna	Salmonella_enterica	0.5208	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBAL010000001.1 Salmonella enterica strain PNUSAS356300 SAMN35754853-rid18404913.denovo.01, whole genome shotgun sequence	460178..460615	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOBAL010000047.1 Salmonella enterica strain PNUSAS356300 SAMN35754853-rid18404913.guided.27, whole genome shotgun sequence	20619..21056	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOBAL010000029.1 Salmonella enterica strain PNUSAS356300 SAMN35754853-rid18404913.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABOBAL010000003.1	93814..94683	99.655	870	0						
GCA_032820215.1_PDT001780750.1_genomic.fna	Salmonella_enterica	0.5226	201.238 KB	9	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	ColRNAI,IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOBAO010000001.1 Salmonella enterica strain PNUSAS356432 SAMN35758824-rid18404133.denovo.01, whole genome shotgun sequence	225991..226428	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOBAO010000066.1 Salmonella enterica strain PNUSAS356432 SAMN35758824-rid18404133.guided.55, whole genome shotgun sequence	923..1360	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABOBAO010000043.1 Salmonella enterica strain PNUSAS356432 SAMN35758824-rid18404133.denovo.43, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOBAO010000062.1 Salmonella enterica strain PNUSAS356432 SAMN35758824-rid18404133.guided.46, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOBAO010000043.1 Salmonella enterica strain PNUSAS356432 SAMN35758824-rid18404133.denovo.43, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOBAO010000065.1 Salmonella enterica strain PNUSAS356432 SAMN35758824-rid18404133.guided.54, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOBAO010000043.1 Salmonella enterica strain PNUSAS356432 SAMN35758824-rid18404133.denovo.43, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABOBAO010000062.1 Salmonella enterica strain PNUSAS356432 SAMN35758824-rid18404133.guided.46, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOBAO010000043.1 Salmonella enterica strain PNUSAS356432 SAMN35758824-rid18404133.denovo.43, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOBAO010000062.1 Salmonella enterica strain PNUSAS356432 SAMN35758824-rid18404133.guided.46, whole genome shotgun sequence	9840..11114	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOBAO010000043.1 Salmonella enterica strain PNUSAS356432 SAMN35758824-rid18404133.denovo.43, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABOBAO010000062.1 Salmonella enterica strain PNUSAS356432 SAMN35758824-rid18404133.guided.46, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABOBAO010000049.1 Salmonella enterica strain PNUSAS356432 SAMN35758824-rid18404133.denovo.52, whole genome shotgun sequence	4021..4151	enterobacteriales	IncR	100	251 / 251	ABOBAO010000041.1 Salmonella enterica strain PNUSAS356432 SAMN35758824-rid18404133.denovo.41, whole genome shotgun sequence	4434..4684																																																avrA	ABOBAO010000006.1	174344..175213	99.77	870	0						
GCA_032820235.1_PDT001780748.1_genomic.fna	Salmonella_enterica	0.522	225.316 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBAQ010000001.1 Salmonella enterica strain PNUSAS356262 SAMN35749932-rid18404113.denovo.01, whole genome shotgun sequence	145240..145677	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBAQ010000060.1 Salmonella enterica strain PNUSAS356262 SAMN35749932-rid18404113.guided.36, whole genome shotgun sequence	3542..3979	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBAQ010000016.1 Salmonella enterica strain PNUSAS356262 SAMN35749932-rid18404113.denovo.16, whole genome shotgun sequence	36050..36692	enterobacteriales	IncFII(S)	100	262 / 262	ABOBAQ010000016.1 Salmonella enterica strain PNUSAS356262 SAMN35749932-rid18404113.denovo.16, whole genome shotgun sequence	51777..52038																																																avrA	ABOBAQ010000002.1	450446..451315	99.885	870	0						
GCA_032820275.1_PDT001780745.1_genomic.fna	Salmonella_enterica	0.522	298.187 KB	7	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBAR010000005.1 Salmonella enterica strain PNUSAS356260 SAMN35749929-rid18404083.denovo.05, whole genome shotgun sequence	221083..221520	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBAR010000038.1 Salmonella enterica strain PNUSAS356260 SAMN35749929-rid18404083.guided.29, whole genome shotgun sequence	5883..6320	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBAR010000021.1	39348..40216	99.195	870	0						
GCA_032820315.1_PDT001780744.1_genomic.fna	Salmonella_enterica	0.5207	225.8 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOBAS010000001.1 Salmonella enterica strain PNUSAS356433 SAMN35758930-rid18404903.denovo.01, whole genome shotgun sequence	520715..521152	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOBAS010000036.1 Salmonella enterica strain PNUSAS356433 SAMN35758930-rid18404903.guided.25, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBAS010000007.1	160466..161334	99.425	870	0						
GCA_032820415.1_PDT001780740.1_genomic.fna	Salmonella_enterica	0.5212	169.046 KB	9	aroC_41,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	2129	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBAV010000002.1 Salmonella enterica strain PNUSAS356280 SAMN35751031-rid18404043.denovo.02, whole genome shotgun sequence	370684..371121	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBAV010000052.1 Salmonella enterica strain PNUSAS356280 SAMN35751031-rid18404043.guided.38, whole genome shotgun sequence	17692..18129	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOBAV010000025.1 Salmonella enterica strain PNUSAS356280 SAMN35751031-rid18404043.denovo.25, whole genome shotgun sequence	5900..6433																																																																	
GCA_032820435.1_PDT001780742.1_genomic.fna	Salmonella_enterica	0.5204	145.55 KB	11	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBAU010000004.1 Salmonella enterica strain PNUSAS356430 SAMN35758933-rid18404063.denovo.04, whole genome shotgun sequence	83150..83587	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBAU010000058.1 Salmonella enterica strain PNUSAS356430 SAMN35758933-rid18404063.guided.40, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOBAU010000048.1 Salmonella enterica strain PNUSAS356430 SAMN35758933-rid18404063.denovo.51, whole genome shotgun sequence	1905..2035																																																						avrA	ABOBAU010000009.1	99371..100240	98.966	870	0						
GCA_032822195.1_PDT001780349.1_genomic.fna	Salmonella_enterica	0.5215	474.524 KB	4	aroC_202,dnaN_428,hemD_102,hisD_544,purE_100,sucA_424,thrA_472	1836	7:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_202	dnaN	100	100	dnaN_428	hemD	100	100	hemD_102	hisD	100	100	hisD_544	purE	100	100	purE_100	sucA	100	100	sucA_424	thrA	100	100	thrA_472	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBCU010000002.1 Salmonella enterica strain FDA1226264-C001-001 SAMN35748911-rid18399533.denovo.02, whole genome shotgun sequence	545850..546287	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOBCU010000026.1 Salmonella enterica strain FDA1226264-C001-001 SAMN35748911-rid18399533.guided.19, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBCU010000003.1	175628..176497	99.54	870	0						
GCA_032822255.1_PDT001780344.1_genomic.fna	Salmonella_enterica	0.5222	332.888 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBCW010000001.1 Salmonella enterica strain PNUSAS356021 SAMN35743210-rid18399503.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOBCW010000031.1 Salmonella enterica strain PNUSAS356021 SAMN35743210-rid18399503.guided.16, whole genome shotgun sequence	34196..34633	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBCW010000002.1	149828..150697	99.655	870	0						
GCA_032822275.1_PDT001780342.1_genomic.fna	Salmonella_enterica	0.5221	234.975 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119*,purE_116,sucA_119,thrA_118	448*	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	99.8003992015968	100	hisD_119*	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBCY010000003.1 Salmonella enterica strain PNUSAS356024 SAMN35743204-rid18399493.denovo.03, whole genome shotgun sequence	62306..62743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOBCY010000042.1 Salmonella enterica strain PNUSAS356024 SAMN35743204-rid18399493.guided.37, whole genome shotgun sequence	1003..1440	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032822295.1_PDT001780343.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBCV010000001.1 Salmonella enterica strain PNUSAS356050 SAMN35743224-rid18400173.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBCV010000020.1 Salmonella enterica strain PNUSAS356050 SAMN35743224-rid18400173.guided.14, whole genome shotgun sequence	2239..2676	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBCV010000012.1 Salmonella enterica strain PNUSAS356050 SAMN35743224-rid18400173.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOBCV010000015.1 Salmonella enterica strain PNUSAS356050 SAMN35743224-rid18400173.denovo.18, whole genome shotgun sequence	3403..3664																																																avrA	ABOBCV010000002.1	553636..554505	99.54	870	0						
GCA_032822315.1_PDT001780341.1_genomic.fna	Salmonella_enterica	0.5217	261.471 KB	8	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOBCZ010000001.1 Salmonella enterica strain PNUSAS355919 SAMN35742587-rid18400163.denovo.01, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOBCZ010000042.1 Salmonella enterica strain PNUSAS355919 SAMN35742587-rid18400163.guided.25, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOBCZ010000007.1	103351..104220	99.77	870	0						
GCA_032822335.1_PDT001780339.1_genomic.fna	Salmonella_enterica	0.521	160.334 KB	10	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOBDA010000035.1 Salmonella enterica strain PNUSAS356031 SAMN35743219-rid18399473.denovo.35, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABOBDA010000065.1 Salmonella enterica strain PNUSAS356031 SAMN35743219-rid18399473.guided.51, whole genome shotgun sequence	4117..4554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABOBDA010000024.1 Salmonella enterica strain PNUSAS356031 SAMN35743219-rid18399473.denovo.24, whole genome shotgun sequence	68874..69135																																																						avrA	ABOBDA010000006.1	94306..95175	98.966	870	0						
GCA_032822355.1_PDT001780340.1_genomic.fna	Salmonella_enterica	0.5212	529.615 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOBCX010000001.1 Salmonella enterica strain PNUSAS356029 SAMN35743203-rid18399483.denovo.01, whole genome shotgun sequence	779769..780206	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOBCX010000022.1 Salmonella enterica strain PNUSAS356029 SAMN35743203-rid18399483.guided.19, whole genome shotgun sequence	2972..3409	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOBCX010000015.1 Salmonella enterica strain PNUSAS356029 SAMN35743203-rid18399483.denovo.15, whole genome shotgun sequence	239..369																																																						avrA	ABOBCX010000006.1	181777..182646	99.425	870	0						
GCA_032822375.1_PDT001780338.1_genomic.fna	Salmonella_enterica	0.5217	320.376 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBDC010000001.1 Salmonella enterica strain PNUSAS356019 SAMN35743218-rid18399463.denovo.01, whole genome shotgun sequence	493955..494392	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBDC010000030.1 Salmonella enterica strain PNUSAS356019 SAMN35743218-rid18399463.guided.15, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032822395.1_PDT001780337.1_genomic.fna	Salmonella_enterica	0.5214	489.863 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBDB010000001.1 Salmonella enterica strain PNUSAS356043 SAMN35743221-rid18399453.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBDB010000024.1 Salmonella enterica strain PNUSAS356043 SAMN35743221-rid18399453.guided.18, whole genome shotgun sequence	2739..3176	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBDB010000012.1 Salmonella enterica strain PNUSAS356043 SAMN35743221-rid18399453.denovo.12, whole genome shotgun sequence	40518..41160	enterobacteriales	IncFII(S)	100	262 / 262	ABOBDB010000015.1 Salmonella enterica strain PNUSAS356043 SAMN35743221-rid18399453.denovo.17, whole genome shotgun sequence	3420..3681																																																avrA	ABOBDB010000002.1	553486..554355	99.54	870	0						
GCA_032822415.1_PDT001780336.1_genomic.fna	Salmonella_enterica	0.5212	421.089 KB	4	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOBDD010000002.1 Salmonella enterica strain PNUSAS356049 SAMN35743213-rid18400153.denovo.02, whole genome shotgun sequence	137127..137564	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOBDD010000017.1 Salmonella enterica strain PNUSAS356049 SAMN35743213-rid18400153.guided.14, whole genome shotgun sequence	6196..6633	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBDD010000001.1	211570..212439	99.54	870	0						
GCA_032822435.1_PDT001780334.1_genomic.fna	Salmonella_enterica	0.5198	478.5 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBDF010000001.1 Salmonella enterica strain PNUSAS356037 SAMN35743200-rid18399433.denovo.01, whole genome shotgun sequence	161971..162408	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBDF010000033.1 Salmonella enterica strain PNUSAS356037 SAMN35743200-rid18399433.guided.14, whole genome shotgun sequence	39520..39957	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBDF010000018.1 Salmonella enterica strain PNUSAS356037 SAMN35743200-rid18399433.denovo.20, whole genome shotgun sequence	2964..3606	enterobacteriales	IncFII(S)	100	262 / 262	ABOBDF010000020.1 Salmonella enterica strain PNUSAS356037 SAMN35743200-rid18399433.denovo.22, whole genome shotgun sequence	3395..3656																																																avrA	ABOBDF010000002.1	585266..586135	99.54	870	0						
GCA_032822455.1_PDT001780335.1_genomic.fna	Salmonella_enterica	0.5218	201.53 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,sul1,tet(A),tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBDE010000001.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOBDE010000028.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.denovo.28, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOBDE010000028.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.denovo.28, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOBDE010000043.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.denovo.44, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOBDE010000043.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.denovo.44, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOBDE010000051.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.denovo.62, whole genome shotgun sequence	93..908	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	X62115	aph(4)-Ia	100	1026/1026	ABOBDE010000065.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.guided.53, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOBDE010000065.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.guided.53, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABOBDE010000069.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.guided.58, whole genome shotgun sequence	3..794	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOBDE010000069.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.guided.58, whole genome shotgun sequence	3..794	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOBDE010000070.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.guided.59, whole genome shotgun sequence	3..794	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOBDE010000070.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.guided.59, whole genome shotgun sequence	3..794	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOBDE010000071.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.guided.63, whole genome shotgun sequence	40..855	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	X62115	aac(6')-Iaa	97.49	438/438	ABOBDE010000072.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.guided.64, whole genome shotgun sequence	404..841	Amikacin, Tobramycin	NC_003197	blaCTX-M-65	100	876/876	ABOBDE010000044.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.denovo.45, whole genome shotgun sequence	901..1776	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOBDE010000068.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.guided.57, whole genome shotgun sequence	683..1558	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOBDE010000040.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.denovo.40, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOBDE010000060.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.guided.41, whole genome shotgun sequence	1130..2343	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOBDE010000028.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.denovo.28, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	99.88	840/840	ABOBDE010000061.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.guided.49, whole genome shotgun sequence	37..876	Sulfamethoxazole	U12338	sul1	100	840/840	ABOBDE010000062.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.guided.50, whole genome shotgun sequence	37..876	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOBDE010000028.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.denovo.28, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOBDE010000063.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.guided.51, whole genome shotgun sequence	148..1347	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOBDE010000064.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.guided.52, whole genome shotgun sequence	148..1347	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOBDE010000032.1 Salmonella enterica strain PNUSAS356027 SAMN35743201-rid18399443.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABOBDE010000004.1	39480..40349	99.655	870	0						
GCA_032822475.1_PDT001780333.1_genomic.fna	Salmonella_enterica	0.5209	370.485 KB	6	aroC_42,dnaN_11,hemD_48,hisD_149,purE_12,sucA_13,thrA_4	1575	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBDG010000001.1 Salmonella enterica strain PNUSAS356039 SAMN35743216-rid18400143.denovo.01, whole genome shotgun sequence	148188..148625	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBDG010000056.1 Salmonella enterica strain PNUSAS356039 SAMN35743216-rid18400143.guided.31, whole genome shotgun sequence	703..1140	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOBDG010000028.1 Salmonella enterica strain PNUSAS356039 SAMN35743216-rid18400143.denovo.28, whole genome shotgun sequence	5946..6588	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABOBDG010000023.1 Salmonella enterica strain PNUSAS356039 SAMN35743216-rid18400143.denovo.23, whole genome shotgun sequence	18865..19447																																																											
GCA_032822495.1_PDT001780332.1_genomic.fna	Salmonella_enterica	0.5222	394.295 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBDH010000001.1 Salmonella enterica strain PNUSAS356034 SAMN35743207-rid18399423.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBDH010000033.1 Salmonella enterica strain PNUSAS356034 SAMN35743207-rid18399423.guided.10, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032822515.1_PDT001780331.1_genomic.fna	Salmonella_enterica	0.521	194.567 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_150,thrA_22	464	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_150	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBDI010000003.1 Salmonella enterica strain PNUSAS356038 SAMN35743209-rid18400133.denovo.03, whole genome shotgun sequence	375132..375569	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBDI010000070.1 Salmonella enterica strain PNUSAS356038 SAMN35743209-rid18400133.guided.44, whole genome shotgun sequence	2241..2678	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABOBDI010000022.1 Salmonella enterica strain PNUSAS356038 SAMN35743209-rid18400133.denovo.22, whole genome shotgun sequence	56593..57235																																																																	
GCA_032822535.1_PDT001780330.1_genomic.fna	Salmonella_enterica	0.5202	340.71 KB	7	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBDL010000010.1 Salmonella enterica strain PNUSAS356025 SAMN35743222-rid18399413.denovo.10, whole genome shotgun sequence	77871..78308	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBDL010000052.1 Salmonella enterica strain PNUSAS356025 SAMN35743222-rid18399413.guided.48, whole genome shotgun sequence	260..697	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOBDL010000026.1 Salmonella enterica strain PNUSAS356025 SAMN35743222-rid18399413.denovo.26, whole genome shotgun sequence	5946..6588																																																						avrA	ABOBDL010000002.1	171422..172291	99.425	870	0						
GCA_032822555.1_PDT001780329.1_genomic.fna	Salmonella_enterica	0.5217	582.003 KB	2	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBDJ010000001.1 Salmonella enterica strain PNUSAS356020 SAMN35743206-rid18399403.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBDJ010000033.1 Salmonella enterica strain PNUSAS356020 SAMN35743206-rid18399403.guided.20, whole genome shotgun sequence	973..1410	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOBDJ010000021.1 Salmonella enterica strain PNUSAS356020 SAMN35743206-rid18399403.denovo.24, whole genome shotgun sequence	547..675	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBDJ010000015.1 Salmonella enterica strain PNUSAS356020 SAMN35743206-rid18399403.denovo.15, whole genome shotgun sequence	23862..24003																																																avrA	ABOBDJ010000002.1	39350..40219	98.966	870	0						
GCA_032822575.1_PDT001780327.1_genomic.fna	Salmonella_enterica	0.5214	430.367 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBDM010000002.1 Salmonella enterica strain PNUSAS356035 SAMN35743212-rid18399393.denovo.02, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBDM010000033.1 Salmonella enterica strain PNUSAS356035 SAMN35743212-rid18399393.guided.20, whole genome shotgun sequence	6665..7102	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBDM010000003.1	514966..515834	99.195	870	0						
GCA_032822595.1_PDT001780328.1_genomic.fna	Salmonella_enterica	0.5221	226.585 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBDK010000002.1 Salmonella enterica strain PNUSAS356030 SAMN35743215-rid18400123.denovo.02, whole genome shotgun sequence	144408..144845	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOBDK010000044.1 Salmonella enterica strain PNUSAS356030 SAMN35743215-rid18400123.guided.39, whole genome shotgun sequence	319..756	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032822635.1_PDT001780326.1_genomic.fna	Salmonella_enterica	0.5211	639.834 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOBDO010000001.1 Salmonella enterica strain PNUSAS356023 SAMN35743198-rid18400113.denovo.01, whole genome shotgun sequence	397863..398300	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOBDO010000044.1 Salmonella enterica strain PNUSAS356023 SAMN35743198-rid18400113.guided.15, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	ABOBDO010000011.1 Salmonella enterica strain PNUSAS356023 SAMN35743198-rid18400113.denovo.11, whole genome shotgun sequence	66803..66942																																																						avrA	ABOBDO010000004.1	544613..545481	99.425	870	0						
GCA_032822655.1_PDT001780323.1_genomic.fna	Salmonella_enterica	0.5219	478.472 KB	4	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBDU010000002.1 Salmonella enterica strain PNUSAS356041 SAMN35743190-rid18400103.denovo.02, whole genome shotgun sequence	500928..501365	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBDU010000021.1 Salmonella enterica strain PNUSAS356041 SAMN35743190-rid18400103.guided.15, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABOBDU010000017.1 Salmonella enterica strain PNUSAS356041 SAMN35743190-rid18400103.denovo.20, whole genome shotgun sequence	2246..2354																																																						avrA	ABOBDU010000003.1	182190..183059	98.966	870	0						
GCA_032822675.1_PDT001780324.1_genomic.fna	Salmonella_enterica	0.5189	270.357 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBDR010000001.1 Salmonella enterica strain PNUSAS355920 SAMN35742590-rid18399373.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBDR010000038.1 Salmonella enterica strain PNUSAS355920 SAMN35742590-rid18399373.guided.23, whole genome shotgun sequence	18092..18529	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOBDR010000009.1 Salmonella enterica strain PNUSAS355920 SAMN35742590-rid18399373.denovo.09, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOBDR010000039.1 Salmonella enterica strain PNUSAS355920 SAMN35742590-rid18399373.guided.29, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBDR010000002.1	169368..170237	99.195	870	0						
GCA_032822715.1_PDT001780325.1_genomic.fna	Salmonella_enterica	0.5206	697.463 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBDP010000001.1 Salmonella enterica strain PNUSAS356028 SAMN35743197-rid18399383.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBDP010000047.1 Salmonella enterica strain PNUSAS356028 SAMN35743197-rid18399383.guided.17, whole genome shotgun sequence	1463..1900	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBDP010000003.1	504146..505016	99.196	871	0						
GCA_032822755.1_PDT001780321.1_genomic.fna	Salmonella_enterica	0.5219	380.104 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBDS010000001.1 Salmonella enterica strain PNUSAS356033 SAMN35743188-rid18400093.denovo.01, whole genome shotgun sequence	684058..684495	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBDS010000024.1 Salmonella enterica strain PNUSAS356033 SAMN35743188-rid18400093.guided.15, whole genome shotgun sequence	32373..32810	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBDS010000005.1	183097..183966	99.77	870	0						
GCA_032822815.1_PDT001780320.1_genomic.fna	Salmonella_enterica	0.5215	762.435 KB	2	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOBDT010000001.1 Salmonella enterica strain PNUSAS356040 SAMN35743191-rid18399353.denovo.01, whole genome shotgun sequence	1369376..1369813	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOBDT010000017.1 Salmonella enterica strain PNUSAS356040 SAMN35743191-rid18399353.guided.11, whole genome shotgun sequence	10370..10807	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOBDT010000008.1 Salmonella enterica strain PNUSAS356040 SAMN35743191-rid18399353.denovo.08, whole genome shotgun sequence	82647..82788																																																						avrA	ABOBDT010000003.1	553510..554379	99.655	870	0						
GCA_032822955.1_PDT001780308.1_genomic.fna	Salmonella_enterica	0.5209	351.48 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBEC010000003.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.denovo.03, whole genome shotgun sequence	159453..159890	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOBEC010000021.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.denovo.22, whole genome shotgun sequence	31733..32569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBEC010000021.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.denovo.22, whole genome shotgun sequence	30930..31733	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOBEC010000036.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.guided.26, whole genome shotgun sequence	12447..12884	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOBEC010000038.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.guided.29, whole genome shotgun sequence	3231..4067	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBEC010000038.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.guided.29, whole genome shotgun sequence	2428..3231	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOBEC010000021.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.denovo.22, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	819/861	ABOBEC010000026.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.denovo.31, whole genome shotgun sequence	3300..4118	Unknown Beta-lactam	KP050491	blaTEM-206	100	819/861	ABOBEC010000026.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.denovo.31, whole genome shotgun sequence	3300..4118	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	819/861	ABOBEC010000026.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.denovo.31, whole genome shotgun sequence	3300..4118	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOBEC010000035.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.guided.24, whole genome shotgun sequence	25227..26372	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOBEC010000040.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.guided.35, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOBEC010000040.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.guided.35, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOBEC010000040.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.guided.35, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABOBEC010000021.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.denovo.22, whole genome shotgun sequence	35705..36918	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOBEC010000039.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.guided.32, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOBEC010000021.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.denovo.22, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOBEC010000038.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.guided.29, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOBEC010000021.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.denovo.22, whole genome shotgun sequence	33830..35104	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOBEC010000038.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.guided.29, whole genome shotgun sequence	5328..6602	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncC	100	417 / 417	ABOBEC010000018.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.denovo.19, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOBEC010000017.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.denovo.17, whole genome shotgun sequence	16900..17159		enterobacteriales	IncX1	98.66	374 / 374	ABOBEC010000017.1 Salmonella enterica strain PNUSAS355942 SAMN35742596-rid18400043.denovo.17, whole genome shotgun sequence	52754..53127																																									avrA	ABOBEC010000006.1	173549..174417	99.54	870	0						
GCA_032823375.1_PDT001780073.1_genomic.fna	Salmonella_enterica	0.5209	406.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBEM010000001.1 Salmonella enterica strain PNUSAS355921 SAMN35742589-rid18397533.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBEM010000027.1 Salmonella enterica strain PNUSAS355921 SAMN35742589-rid18397533.guided.15, whole genome shotgun sequence	10936..11373	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBEM010000018.1 Salmonella enterica strain PNUSAS355921 SAMN35742589-rid18397533.denovo.20, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABOBEM010000019.1 Salmonella enterica strain PNUSAS355921 SAMN35742589-rid18397533.denovo.22, whole genome shotgun sequence	3385..3646																																																avrA	ABOBEM010000002.1	505461..506330	99.54	870	0						
GCA_032823395.1_PDT001780071.1_genomic.fna	Salmonella_enterica	0.5213	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBEO010000001.1 Salmonella enterica strain PNUSAS355944 SAMN35742591-rid18396393.denovo.01, whole genome shotgun sequence	815076..815513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBEO010000027.1 Salmonella enterica strain PNUSAS355944 SAMN35742591-rid18396393.guided.19, whole genome shotgun sequence	9834..10271	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBEO010000018.1 Salmonella enterica strain PNUSAS355944 SAMN35742591-rid18396393.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOBEO010000019.1 Salmonella enterica strain PNUSAS355944 SAMN35742591-rid18396393.denovo.21, whole genome shotgun sequence	3401..3662																																																avrA	ABOBEO010000002.1	553176..554045	99.54	870	0						
GCA_032823495.1_PDT001780075.1_genomic.fna	Salmonella_enterica	0.5213	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBEK010000001.1 Salmonella enterica strain PNUSAS355939 SAMN35742594-rid18397553.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBEK010000019.1 Salmonella enterica strain PNUSAS355939 SAMN35742594-rid18397553.denovo.19, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOBEK010000016.1 Salmonella enterica strain PNUSAS355939 SAMN35742594-rid18397553.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABOBEK010000002.1	553636..554505	99.54	870	0						
GCA_032823535.1_PDT001780074.1_genomic.fna	Salmonella_enterica	0.5216	225.563 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBEL010000001.1 Salmonella enterica strain PNUSAS355938 SAMN35742597-rid18397543.denovo.01, whole genome shotgun sequence	233248..233685	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBEL010000049.1 Salmonella enterica strain PNUSAS355938 SAMN35742597-rid18397543.guided.36, whole genome shotgun sequence	3415..3852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBEL010000025.1 Salmonella enterica strain PNUSAS355938 SAMN35742597-rid18397543.denovo.25, whole genome shotgun sequence	44750..45392	enterobacteriales	IncFII(S)	100	262 / 262	ABOBEL010000025.1 Salmonella enterica strain PNUSAS355938 SAMN35742597-rid18397543.denovo.25, whole genome shotgun sequence	29404..29665																																																avrA	ABOBEL010000005.1	94133..95002	99.885	870	0						
GCA_032823555.1_PDT001780076.1_genomic.fna	Salmonella_enterica	0.5214	351.004 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBEJ010000001.1 Salmonella enterica strain PNUSAS355940 SAMN35742595-rid18396413.denovo.01, whole genome shotgun sequence	477374..477811	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBEJ010000026.1 Salmonella enterica strain PNUSAS355940 SAMN35742595-rid18396413.guided.24, whole genome shotgun sequence	1036..1473	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBEJ010000002.1	505075..505944	99.195	870	0						
GCA_032823595.1_PDT001780072.1_genomic.fna	Salmonella_enterica	0.5199	406.116 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	0		3	IncFIB(S),IncFII(S),IncX1,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBEN010000001.1 Salmonella enterica strain PNUSAS355918 SAMN35742588-rid18396403.denovo.01, whole genome shotgun sequence	774552..774989	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBEN010000028.1 Salmonella enterica strain PNUSAS355918 SAMN35742588-rid18396403.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOBEN010000016.1 Salmonella enterica strain PNUSAS355918 SAMN35742588-rid18396403.denovo.16, whole genome shotgun sequence	7202..8062	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOBEN010000027.1 Salmonella enterica strain PNUSAS355918 SAMN35742588-rid18396403.guided.17, whole genome shotgun sequence	27492..28352	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBEN010000020.1 Salmonella enterica strain PNUSAS355918 SAMN35742588-rid18396403.denovo.22, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOBEN010000021.1 Salmonella enterica strain PNUSAS355918 SAMN35742588-rid18396403.denovo.25, whole genome shotgun sequence	3403..3664		enterobacteriales	IncX1	98.66	374 / 374	ABOBEN010000016.1 Salmonella enterica strain PNUSAS355918 SAMN35742588-rid18396403.denovo.16, whole genome shotgun sequence	18063..18436		enterobacteriales	IncX1	98.66	374 / 374	ABOBEN010000027.1 Salmonella enterica strain PNUSAS355918 SAMN35742588-rid18396403.guided.17, whole genome shotgun sequence	17118..17491																																		avrA	ABOBEN010000002.1	552981..553850	99.54	870	0						
GCA_032823615.1_PDT001780070.1_genomic.fna	Salmonella_enterica	0.5204	171.863 KB	10	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBEP010000004.1 Salmonella enterica strain PNUSAS355941 SAMN35742592-rid18396383.denovo.04, whole genome shotgun sequence	136364..136801	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBEP010000050.1 Salmonella enterica strain PNUSAS355941 SAMN35742592-rid18396383.guided.43, whole genome shotgun sequence	2226..2663	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABOBEP010000024.1 Salmonella enterica strain PNUSAS355941 SAMN35742592-rid18396383.denovo.24, whole genome shotgun sequence	62731..63373																																																																	
GCA_032826775.1_PDT001779877.1_genomic.fna	Salmonella_enterica	0.5224	391.947 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOBEQ010000001.1 Salmonella enterica strain PNUSAS356209 SAMN35735738-rid18394763.denovo.01, whole genome shotgun sequence	836204..836641	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOBEQ010000034.1 Salmonella enterica strain PNUSAS356209 SAMN35735738-rid18394763.guided.24, whole genome shotgun sequence	7029..7466	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABOBEQ010000025.1 Salmonella enterica strain PNUSAS356209 SAMN35735738-rid18394763.denovo.28, whole genome shotgun sequence	3238..3348																																																						avrA	ABOBEQ010000003.1	131926..132795	98.966	870	0						
GCA_032826835.1_PDT001779874.1_genomic.fna	Salmonella_enterica	0.521	442.295 KB	4	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBEU010000002.1 Salmonella enterica strain PNUSAS356210 SAMN35735735-rid18394733.denovo.02, whole genome shotgun sequence	624511..624948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBEU010000037.1 Salmonella enterica strain PNUSAS356210 SAMN35735735-rid18394733.guided.23, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABOBEU010000023.1 Salmonella enterica strain PNUSAS356210 SAMN35735735-rid18394733.denovo.26, whole genome shotgun sequence	358..488	enterobacteriales	Col(pHAD28)	90.08	131 / 131	ABOBEU010000024.1 Salmonella enterica strain PNUSAS356210 SAMN35735735-rid18394733.denovo.27, whole genome shotgun sequence	1078..1208																																																											
GCA_032826855.1_PDT001779876.1_genomic.fna	Salmonella_enterica	0.5211	351.48 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	1	gyrA_p.D87N	4	Col440I,IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBER010000002.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.denovo.02, whole genome shotgun sequence	159434..159871	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOBER010000023.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.denovo.23, whole genome shotgun sequence	31733..32569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBER010000023.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.denovo.23, whole genome shotgun sequence	30930..31733	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOBER010000033.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.denovo.43, whole genome shotgun sequence	137..952	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	V00359	aac(6')-Iaa	98.63	438/438	ABOBER010000039.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.guided.26, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOBER010000044.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.guided.34, whole genome shotgun sequence	2251..3087	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBER010000044.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.guided.34, whole genome shotgun sequence	1448..2251	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOBER010000048.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.guided.42, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	V00359	blaCMY-2	100	1146/1146	ABOBER010000023.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.denovo.23, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOBER010000027.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.denovo.31, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOBER010000027.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.denovo.31, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOBER010000027.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.denovo.31, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOBER010000042.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.guided.30, whole genome shotgun sequence	10779..11924	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOBER010000047.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.guided.39, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOBER010000047.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.guided.39, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOBER010000047.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.guided.39, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABOBER010000023.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.denovo.23, whole genome shotgun sequence	35705..36918	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOBER010000043.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.guided.33, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOBER010000023.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.denovo.23, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOBER010000044.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.guided.34, whole genome shotgun sequence	572..1387	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOBER010000023.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.denovo.23, whole genome shotgun sequence	33830..35104	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1275/1275	ABOBER010000045.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.guided.37, whole genome shotgun sequence	420..1694	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOBER010000046.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.guided.38, whole genome shotgun sequence	420..1694	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																							gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	Col440I	93.69	111 / 114	ABOBER010000030.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.denovo.36, whole genome shotgun sequence	339..449	enterobacteriales	IncC	100	417 / 417	ABOBER010000021.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.denovo.21, whole genome shotgun sequence	17493..17909		enterobacteriales	IncFII(S)	97.71	262 / 262	ABOBER010000018.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.denovo.18, whole genome shotgun sequence	16900..17159		enterobacteriales	IncX1	98.66	374 / 374	ABOBER010000018.1 Salmonella enterica strain PNUSAS356207 SAMN35735736-rid18394753.denovo.18, whole genome shotgun sequence	52753..53126																																		avrA	ABOBER010000006.1	173549..174417	99.54	870	0						
GCA_032826955.1_PDT001779873.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBEW010000001.1 Salmonella enterica strain PNUSAS356208 SAMN35735737-rid18394723.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBEW010000025.1 Salmonella enterica strain PNUSAS356208 SAMN35735737-rid18394723.guided.19, whole genome shotgun sequence	13293..13730	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBEW010000018.1 Salmonella enterica strain PNUSAS356208 SAMN35735737-rid18394723.denovo.18, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOBEW010000015.1 Salmonella enterica strain PNUSAS356208 SAMN35735737-rid18394723.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOBEW010000002.1	553312..554181	99.54	870	0						
GCA_032826975.1_PDT001779875.1_genomic.fna	Salmonella_enterica	0.5209	381.545 KB	4	aroC_173,dnaN_293,hemD_21,hisD_639,purE_115,sucA_12,thrA_293	2390	1,3,19:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_173	dnaN	100	100	dnaN_293	hemD	100	100	hemD_21	hisD	100	100	hisD_639	purE	100	100	purE_115	sucA	100	100	sucA_12	thrA	100	100	thrA_293	1,3,19	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Cannstatt		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOBET010000001.1 Salmonella enterica strain PNUSAS356211 SAMN35735739-rid18394743.denovo.01, whole genome shotgun sequence	86147..86584	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOBET010000028.1 Salmonella enterica strain PNUSAS356211 SAMN35735739-rid18394743.guided.18, whole genome shotgun sequence	16445..16882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBET010000002.1	510045..510914	99.655	870	0						
GCA_032829395.1_PDT001779588.1_genomic.fna	Salmonella_enterica	0.5217	263.453 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBJL010000001.1 Salmonella enterica strain PNUSAS356140 SAMN35734640-rid18393313.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOBJL010000042.1 Salmonella enterica strain PNUSAS356140 SAMN35734640-rid18393313.guided.25, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOBJL010000021.1 Salmonella enterica strain PNUSAS356140 SAMN35734640-rid18393313.denovo.21, whole genome shotgun sequence	16915..18120	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOBJL010000043.1 Salmonella enterica strain PNUSAS356140 SAMN35734640-rid18393313.guided.27, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBJL010000021.1 Salmonella enterica strain PNUSAS356140 SAMN35734640-rid18393313.denovo.21, whole genome shotgun sequence	24506..24647	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBJL010000043.1 Salmonella enterica strain PNUSAS356140 SAMN35734640-rid18393313.guided.27, whole genome shotgun sequence	3169..3310																																																avrA	ABOBJL010000005.1	149828..150697	99.655	870	0						
GCA_032829415.1_PDT001779589.1_genomic.fna	Salmonella_enterica	0.5197	269.072 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		5	Col(pHAD28),IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI2	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBJK010000002.1 Salmonella enterica strain PNUSAS356137 SAMN35734648-rid18391823.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBJK010000056.1 Salmonella enterica strain PNUSAS356137 SAMN35734648-rid18391823.guided.22, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOBJK010000037.1 Salmonella enterica strain PNUSAS356137 SAMN35734648-rid18391823.denovo.40, whole genome shotgun sequence	557..687	enterobacteriales	IncFIB(S)	100	643 / 643	ABOBJK010000018.1 Salmonella enterica strain PNUSAS356137 SAMN35734648-rid18391823.denovo.18, whole genome shotgun sequence	86328..86970		enterobacteriales	IncFII(S)	100	262 / 262	ABOBJK010000018.1 Salmonella enterica strain PNUSAS356137 SAMN35734648-rid18391823.denovo.18, whole genome shotgun sequence	70982..71243		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOBJK010000020.1 Salmonella enterica strain PNUSAS356137 SAMN35734648-rid18391823.denovo.20, whole genome shotgun sequence	66857..66998		enterobacteriales	IncI2	99.38	324 / 324	ABOBJK010000029.1 Salmonella enterica strain PNUSAS356137 SAMN35734648-rid18391823.denovo.30, whole genome shotgun sequence	4706..5029																											avrA	ABOBJK010000007.1	95120..95988	100	869	0						
GCA_032829435.1_PDT001779587.1_genomic.fna	Salmonella_enterica	0.5211	225.554 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,sul1,sul1	0		3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBJM010000003.1 Salmonella enterica strain PNUSAS356135 SAMN35734641-rid18391813.denovo.03, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOBJM010000015.1 Salmonella enterica strain PNUSAS356135 SAMN35734641-rid18391813.denovo.15, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABOBJM010000037.1 Salmonella enterica strain PNUSAS356135 SAMN35734641-rid18391813.guided.30, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOBJM010000039.1 Salmonella enterica strain PNUSAS356135 SAMN35734641-rid18391813.guided.32, whole genome shotgun sequence	4636..5415	Spectinomycin, Streptomycin	D43625	sul1	100	840/840	ABOBJM010000015.1 Salmonella enterica strain PNUSAS356135 SAMN35734641-rid18391813.denovo.15, whole genome shotgun sequence	60117..60956	Sulfamethoxazole	U12338	sul1	100	840/840	ABOBJM010000039.1 Salmonella enterica strain PNUSAS356135 SAMN35734641-rid18391813.guided.32, whole genome shotgun sequence	5920..6759	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col440I	92.04	113 / 114	ABOBJM010000030.1 Salmonella enterica strain PNUSAS356135 SAMN35734641-rid18391813.denovo.34, whole genome shotgun sequence	1334..1446	enterobacteriales	IncFIB(S)	100	643 / 643	ABOBJM010000021.1 Salmonella enterica strain PNUSAS356135 SAMN35734641-rid18391813.denovo.21, whole genome shotgun sequence	6832..7474		enterobacteriales	IncFII(S)	100	262 / 262	ABOBJM010000021.1 Salmonella enterica strain PNUSAS356135 SAMN35734641-rid18391813.denovo.21, whole genome shotgun sequence	22559..22820																																									avrA	ABOBJM010000001.1	506658..507527	99.885	870	0						
GCA_032829455.1_PDT001779586.1_genomic.fna	Salmonella_enterica	0.5215	432.47 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOBJN010000001.1 Salmonella enterica strain PNUSAS356146 SAMN35734646-rid18393303.denovo.01, whole genome shotgun sequence	1079965..1080402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOBJN010000020.1 Salmonella enterica strain PNUSAS356146 SAMN35734646-rid18393303.guided.16, whole genome shotgun sequence	30906..31343	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBJN010000005.1	179088..179957	99.425	870	0						
GCA_032829475.1_PDT001779585.1_genomic.fna	Salmonella_enterica	0.5215	337.594 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBJO010000001.1 Salmonella enterica strain PNUSAS356147 SAMN35734647-rid18391803.denovo.01, whole genome shotgun sequence	872429..872866	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBJO010000033.1 Salmonella enterica strain PNUSAS356147 SAMN35734647-rid18391803.guided.24, whole genome shotgun sequence	16448..16885	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBJO010000002.1	551169..552038	99.195	870	0						
GCA_032829495.1_PDT001779584.1_genomic.fna	Salmonella_enterica	0.521	401.713 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBJP010000004.1 Salmonella enterica strain PNUSAS356138 SAMN35734649-rid18391793.denovo.04, whole genome shotgun sequence	159453..159890	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOBJP010000021.1 Salmonella enterica strain PNUSAS356138 SAMN35734649-rid18391793.denovo.22, whole genome shotgun sequence	5652..6488	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBJP010000021.1 Salmonella enterica strain PNUSAS356138 SAMN35734649-rid18391793.denovo.22, whole genome shotgun sequence	4849..5652	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOBJP010000032.1 Salmonella enterica strain PNUSAS356138 SAMN35734649-rid18391793.guided.19, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOBJP010000034.1 Salmonella enterica strain PNUSAS356138 SAMN35734649-rid18391793.guided.25, whole genome shotgun sequence	5693..6529	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBJP010000034.1 Salmonella enterica strain PNUSAS356138 SAMN35734649-rid18391793.guided.25, whole genome shotgun sequence	4890..5693	Streptomycin	AF321551	floR	98.19	1214/1215	ABOBJP010000021.1 Salmonella enterica strain PNUSAS356138 SAMN35734649-rid18391793.denovo.22, whole genome shotgun sequence	9624..10837	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOBJP010000036.1 Salmonella enterica strain PNUSAS356138 SAMN35734649-rid18391793.guided.28, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOBJP010000021.1 Salmonella enterica strain PNUSAS356138 SAMN35734649-rid18391793.denovo.22, whole genome shotgun sequence	3973..4788	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOBJP010000034.1 Salmonella enterica strain PNUSAS356138 SAMN35734649-rid18391793.guided.25, whole genome shotgun sequence	4014..4829	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOBJP010000021.1 Salmonella enterica strain PNUSAS356138 SAMN35734649-rid18391793.denovo.22, whole genome shotgun sequence	7749..9023	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOBJP010000034.1 Salmonella enterica strain PNUSAS356138 SAMN35734649-rid18391793.guided.25, whole genome shotgun sequence	7790..9064	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncC	100	417 / 417	ABOBJP010000018.1 Salmonella enterica strain PNUSAS356138 SAMN35734649-rid18391793.denovo.18, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOBJP010000015.1 Salmonella enterica strain PNUSAS356138 SAMN35734649-rid18391793.denovo.15, whole genome shotgun sequence	16902..17161		enterobacteriales	IncX1	98.66	374 / 374	ABOBJP010000015.1 Salmonella enterica strain PNUSAS356138 SAMN35734649-rid18391793.denovo.15, whole genome shotgun sequence	52756..53129																																									avrA	ABOBJP010000007.1	173544..174412	99.54	870	0						
GCA_032829515.1_PDT001779583.1_genomic.fna	Salmonella_enterica	0.5215	362.952 KB	5	aroC_75,dnaN_67,hemD_10,hisD_17,purE_15,sucA_9,thrA_66	197	7:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrS2,qnrS2,qnrS2	1	parC_p.T57S	3	IncI1-I(Alpha),IncL,IncQ2,IncQ2	aroC	100	100	aroC_75	dnaN	100	100	dnaN_67	hemD	100	100	hemD_10	hisD	100	100	hisD_17	purE	100	100	purE_15	sucA	100	100	sucA_9	thrA	100	100	thrA_66	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOBJR010000001.1 Salmonella enterica strain PNUSAS356145 SAMN35734645-rid18391783.denovo.01, whole genome shotgun sequence	681120..681557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOBJR010000035.1 Salmonella enterica strain PNUSAS356145 SAMN35734645-rid18391783.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	qnrS2	100	493/657	ABOBJR010000024.1 Salmonella enterica strain PNUSAS356145 SAMN35734645-rid18391783.denovo.28, whole genome shotgun sequence	1..493	Ciprofloxacin	DQ485530	qnrS2	100	164/657	ABOBJR010000024.1 Salmonella enterica strain PNUSAS356145 SAMN35734645-rid18391783.denovo.28, whole genome shotgun sequence	7049..7212	Ciprofloxacin	DQ485530	qnrS2	100	657/657	ABOBJR010000036.1 Salmonella enterica strain PNUSAS356145 SAMN35734645-rid18391783.guided.27, whole genome shotgun sequence	5969..6625	Ciprofloxacin	DQ485530																																																																																																																																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBJR010000014.1 Salmonella enterica strain PNUSAS356145 SAMN35734645-rid18391783.denovo.14, whole genome shotgun sequence	93982..94123	enterobacteriales	IncL	90.36	664 / 661	ABOBJR010000018.1 Salmonella enterica strain PNUSAS356145 SAMN35734645-rid18391783.denovo.18, whole genome shotgun sequence	22736..23397		enterobacteriales	IncQ2	94.24	451 / 450	ABOBJR010000024.1 Salmonella enterica strain PNUSAS356145 SAMN35734645-rid18391783.denovo.28, whole genome shotgun sequence	4944..5393		enterobacteriales	IncQ2	94.24	451 / 450	ABOBJR010000036.1 Salmonella enterica strain PNUSAS356145 SAMN35734645-rid18391783.guided.27, whole genome shotgun sequence	1069..1518																																		avrA	ABOBJR010000007.1	143545..144414	99.77	870	0						
GCA_032829535.1_PDT001779582.1_genomic.fna	Salmonella_enterica	0.5215	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBJQ010000001.1 Salmonella enterica strain PNUSAS356144 SAMN35734638-rid18391773.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOBJQ010000026.1 Salmonella enterica strain PNUSAS356144 SAMN35734638-rid18391773.denovo.27, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOBJQ010000026.1 Salmonella enterica strain PNUSAS356144 SAMN35734638-rid18391773.denovo.27, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOBJQ010000040.1 Salmonella enterica strain PNUSAS356144 SAMN35734638-rid18391773.denovo.45, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOBJQ010000040.1 Salmonella enterica strain PNUSAS356144 SAMN35734638-rid18391773.denovo.45, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOBJQ010000050.1 Salmonella enterica strain PNUSAS356144 SAMN35734638-rid18391773.guided.36, whole genome shotgun sequence	9870..10307	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOBJQ010000051.1 Salmonella enterica strain PNUSAS356144 SAMN35734638-rid18391773.guided.38, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOBJQ010000051.1 Salmonella enterica strain PNUSAS356144 SAMN35734638-rid18391773.guided.38, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOBJQ010000052.1 Salmonella enterica strain PNUSAS356144 SAMN35734638-rid18391773.guided.46, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOBJQ010000052.1 Salmonella enterica strain PNUSAS356144 SAMN35734638-rid18391773.guided.46, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABOBJQ010000026.1 Salmonella enterica strain PNUSAS356144 SAMN35734638-rid18391773.denovo.27, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOBJQ010000051.1 Salmonella enterica strain PNUSAS356144 SAMN35734638-rid18391773.guided.38, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOBJQ010000026.1 Salmonella enterica strain PNUSAS356144 SAMN35734638-rid18391773.denovo.27, whole genome shotgun sequence	15824..17023	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOBJQ010000049.1 Salmonella enterica strain PNUSAS356144 SAMN35734638-rid18391773.guided.33, whole genome shotgun sequence	4000..5199	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOBJQ010000030.1 Salmonella enterica strain PNUSAS356144 SAMN35734638-rid18391773.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABOBJQ010000002.1	149828..150697	99.655	870	0						
GCA_032829555.1_PDT001779581.1_genomic.fna	Salmonella_enterica	0.5142	380.329 KB	5	aroC_145,dnaN_26,hemD_30,hisD_144,purE_21,sucA_145,thrA_28	430	50:k:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_145	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_144	purE	100	100	purE_21	sucA	100	100	sucA_145	thrA	100	100	thrA_28	50	k	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 50:k:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOBJS010000002.1 Salmonella enterica strain PNUSAS356143 SAMN35734642-rid18393293.denovo.02, whole genome shotgun sequence	96904..97341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOBJS010000036.1 Salmonella enterica strain PNUSAS356143 SAMN35734642-rid18393293.guided.20, whole genome shotgun sequence	6019..6456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBJS010000001.1	154125..154994	96.552	870	0						
GCA_032829575.1_PDT001779580.1_genomic.fna	Salmonella_enterica	0.5217	691.141 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOBJT010000001.1 Salmonella enterica strain PNUSAS356136 SAMN35734639-rid18391763.denovo.01, whole genome shotgun sequence	684864..685301	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOBJT010000027.1 Salmonella enterica strain PNUSAS356136 SAMN35734639-rid18391763.guided.13, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBJT010000004.1	561960..562829	99.77	870	0						
GCA_032829595.1_PDT001779579.1_genomic.fna	Salmonella_enterica	0.5144	338.528 KB	6	aroC_145,dnaN_26,hemD_30,hisD_144,purE_21,sucA_145,thrA_28	430	50:k:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_145	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_144	purE	100	100	purE_21	sucA	100	100	sucA_145	thrA	100	100	thrA_28	50	k	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 50:k:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOBJU010000002.1 Salmonella enterica strain PNUSAS356142 SAMN35734643-rid18391753.denovo.02, whole genome shotgun sequence	96904..97341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOBJU010000038.1 Salmonella enterica strain PNUSAS356142 SAMN35734643-rid18391753.guided.22, whole genome shotgun sequence	18459..18896	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBJU010000001.1	154125..154994	96.552	870	0						
GCA_032829615.1_PDT001779578.1_genomic.fna	Salmonella_enterica	0.5218	341.181 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBJV010000002.1 Salmonella enterica strain PNUSAS356141 SAMN35734644-rid18393283.denovo.02, whole genome shotgun sequence	207039..207476	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBJV010000056.1 Salmonella enterica strain PNUSAS356141 SAMN35734644-rid18393283.guided.30, whole genome shotgun sequence	18186..18623	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBJV010000021.1 Salmonella enterica strain PNUSAS356141 SAMN35734644-rid18393283.denovo.21, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABOBJV010000021.1 Salmonella enterica strain PNUSAS356141 SAMN35734644-rid18393283.denovo.21, whole genome shotgun sequence	22553..22814																																																avrA	ABOBJV010000001.1	450785..451654	99.885	870	0						
GCA_032829635.1_PDT001779577.1_genomic.fna	Salmonella_enterica	0.5211	199.575 KB	6	aroC_22,dnaN_10,hemD_25,hisD_21,purE_10,sucA_35,thrA_4	715	9:l,v:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX4	aroC	100	100	aroC_22	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	9	l,v	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Zaiman		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOBJW010000012.1 Salmonella enterica strain PNUSAS356162 SAMN35734635-rid18391743.denovo.12, whole genome shotgun sequence	70788..71225	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOBJW010000042.1 Salmonella enterica strain PNUSAS356162 SAMN35734635-rid18391743.guided.26, whole genome shotgun sequence	7731..8168	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX4	99.73	374 / 374	ABOBJW010000031.1 Salmonella enterica strain PNUSAS356162 SAMN35734635-rid18391743.denovo.34, whole genome shotgun sequence	4410..4783																																																						avrA	ABOBJW010000002.1	95170..96039	98.966	870	0						
GCA_032829655.1_PDT001779574.1_genomic.fna	Salmonella_enterica	0.5221	203.759 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBJZ010000001.1 Salmonella enterica strain PNUSAS356169 SAMN35734634-rid18391553.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOBJZ010000040.1 Salmonella enterica strain PNUSAS356169 SAMN35734634-rid18391553.guided.31, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBJZ010000004.1	149646..150515	99.655	870	0						
GCA_032829675.1_PDT001779576.1_genomic.fna	Salmonella_enterica	0.5213	299.885 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_70,sucA_9,thrA_2	213	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,tet(W),tet(W)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_70	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBJY010000001.1 Salmonella enterica strain PNUSAS356163 SAMN35734636-rid18393273.denovo.01, whole genome shotgun sequence	469765..470202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBJY010000034.1 Salmonella enterica strain PNUSAS356163 SAMN35734636-rid18393273.guided.25, whole genome shotgun sequence	5121..5558	Amikacin, Tobramycin	NC_003197	tet(W)	100	1920/1920	ABOBJY010000001.1 Salmonella enterica strain PNUSAS356163 SAMN35734636-rid18393273.denovo.01, whole genome shotgun sequence	14698..16617	Doxycycline, Tetracycline, Minocycline	AJ427422	tet(W)	100	1920/1920	ABOBJY010000032.1 Salmonella enterica strain PNUSAS356163 SAMN35734636-rid18393273.guided.18, whole genome shotgun sequence	14719..16638	Doxycycline, Tetracycline, Minocycline	AJ427422																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABOBJY010000004.1	174408..175277	99.885	870	0						
GCA_032829695.1_PDT001779575.1_genomic.fna	Salmonella_enterica	0.5205	249.397 KB	7	aroC_13,dnaN_181,hemD_49,hisD_13,purE_183,sucA_71,thrA_4	617	28:i:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_13	dnaN	100	100	dnaN_181	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_183	sucA	100	100	sucA_71	thrA	100	100	thrA_4	28	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	Cotham		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBJX010000002.1 Salmonella enterica strain PNUSAS356157 SAMN35734637-rid18391733.denovo.02, whole genome shotgun sequence	149397..149834	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOBJX010000061.1 Salmonella enterica strain PNUSAS356157 SAMN35734637-rid18391733.guided.24, whole genome shotgun sequence	24947..25384	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOBJX010000036.1 Salmonella enterica strain PNUSAS356157 SAMN35734637-rid18391733.denovo.39, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOBJX010000063.1 Salmonella enterica strain PNUSAS356157 SAMN35734637-rid18391733.guided.44, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOBJX010000036.1 Salmonella enterica strain PNUSAS356157 SAMN35734637-rid18391733.denovo.39, whole genome shotgun sequence	1519..1649	enterobacteriales	ColRNAI	90.08	131 / 130	ABOBJX010000026.1 Salmonella enterica strain PNUSAS356157 SAMN35734637-rid18391733.denovo.29, whole genome shotgun sequence	3051..3181																																																avrA	ABOBJX010000009.1	39349..40218	99.425	870	0						
GCA_032829715.1_PDT001779573.1_genomic.fna	Salmonella_enterica	0.5217	251.786 KB	7	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	13:z:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	Worthington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOBKA010000008.1 Salmonella enterica strain PNUSAS356164 SAMN35734625-rid18393263.denovo.08, whole genome shotgun sequence	80112..80549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOBKA010000039.1 Salmonella enterica strain PNUSAS356164 SAMN35734625-rid18393263.guided.25, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOBKA010000036.1 Salmonella enterica strain PNUSAS356164 SAMN35734625-rid18393263.denovo.39, whole genome shotgun sequence	1708..1838																																																						avrA	ABOBKA010000001.1	148776..149645	99.08	870	0						
GCA_032829735.1_PDT001779572.1_genomic.fna	Salmonella_enterica	0.5209	182.393 KB	9	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBKB010000012.1 Salmonella enterica strain PNUSAS356158 SAMN35734627-rid18391543.denovo.12, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBKB010000058.1 Salmonella enterica strain PNUSAS356158 SAMN35734627-rid18391543.guided.30, whole genome shotgun sequence	16063..16500	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOBKB010000033.1 Salmonella enterica strain PNUSAS356158 SAMN35734627-rid18391543.denovo.34, whole genome shotgun sequence	20963..21496																																																						avrA	ABOBKB010000002.1	39432..40298	98.851	870	0						
GCA_032829755.1_PDT001779571.1_genomic.fna	Salmonella_enterica	0.5202	270.618 KB	7	aroC_46,dnaN_588,hemD_3,hisD_800,purE_517,sucA_2,thrA_1	3868	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_588	hemD	100	100	hemD_3	hisD	100	100	hisD_800	purE	100	100	purE_517	sucA	100	100	sucA_2	thrA	100	100	thrA_1	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBKC010000004.1 Salmonella enterica strain PNUSAS356161 SAMN35734632-rid18393253.denovo.04, whole genome shotgun sequence	298794..299231	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBKC010000039.1 Salmonella enterica strain PNUSAS356161 SAMN35734632-rid18393253.guided.32, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197	fosA7	93.14	423/423	ABOBKC010000002.1 Salmonella enterica strain PNUSAS356161 SAMN35734632-rid18393253.denovo.02, whole genome shotgun sequence	269336..269758	Fosfomycin	LAPJ01000014	fosA7	93.14	423/423	ABOBKC010000037.1 Salmonella enterica strain PNUSAS356161 SAMN35734632-rid18393253.guided.29, whole genome shotgun sequence	21691..22113	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBKC010000001.1	94303..95174	99.541	872	0						
GCA_032829775.1_PDT001779570.1_genomic.fna	Salmonella_enterica	0.5198	347.964 KB	6	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOBKD010000004.1 Salmonella enterica strain PNUSAS356168 SAMN35734633-rid18391723.denovo.04, whole genome shotgun sequence	254890..255327	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOBKD010000027.1 Salmonella enterica strain PNUSAS356168 SAMN35734633-rid18391723.guided.23, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBKD010000001.1	509794..510662	99.425	870	0						
GCA_032829795.1_PDT001779569.1_genomic.fna	Salmonella_enterica	0.5212	412.178 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBKE010000001.1 Salmonella enterica strain PNUSAS356160 SAMN35734631-rid18391713.denovo.01, whole genome shotgun sequence	293266..293703	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBKE010000025.1 Salmonella enterica strain PNUSAS356160 SAMN35734631-rid18391713.guided.17, whole genome shotgun sequence	8093..8530	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBKE010000017.1 Salmonella enterica strain PNUSAS356160 SAMN35734631-rid18391713.denovo.20, whole genome shotgun sequence	6823..7465	enterobacteriales	IncFII(S)	100	262 / 262	ABOBKE010000019.1 Salmonella enterica strain PNUSAS356160 SAMN35734631-rid18391713.denovo.22, whole genome shotgun sequence	3390..3651																																																avrA	ABOBKE010000002.1	553064..553933	99.54	870	0						
GCA_032829815.1_PDT001779568.1_genomic.fna	Salmonella_enterica	0.5209	339.552 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(29),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBKF010000001.1 Salmonella enterica strain PNUSAS356159 SAMN35734630-rid18391703.denovo.01, whole genome shotgun sequence	293247..293684	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBKF010000037.1 Salmonella enterica strain PNUSAS356159 SAMN35734630-rid18391703.guided.20, whole genome shotgun sequence	10395..10832	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBKF010000021.1 Salmonella enterica strain PNUSAS356159 SAMN35734630-rid18391703.denovo.24, whole genome shotgun sequence	6828..7470	enterobacteriales	IncFII(29)	95.77	260 / 259	ABOBKF010000017.1 Salmonella enterica strain PNUSAS356159 SAMN35734630-rid18391703.denovo.17, whole genome shotgun sequence	47452..47711		enterobacteriales	IncFII(S)	100	262 / 262	ABOBKF010000025.1 Salmonella enterica strain PNUSAS356159 SAMN35734630-rid18391703.denovo.28, whole genome shotgun sequence	2360..2621																																									avrA	ABOBKF010000002.1	552782..553651	99.54	870	0						
GCA_032829835.1_PDT001779567.1_genomic.fna	Salmonella_enterica	0.5212	593.296 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBKH010000001.1 Salmonella enterica strain PNUSAS356166 SAMN35734623-rid18391693.denovo.01, whole genome shotgun sequence	276186..276623	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBKH010000026.1 Salmonella enterica strain PNUSAS356166 SAMN35734623-rid18391693.guided.18, whole genome shotgun sequence	10176..10613	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBKH010000015.1 Salmonella enterica strain PNUSAS356166 SAMN35734623-rid18391693.denovo.16, whole genome shotgun sequence	6829..7471	enterobacteriales	IncFII(S)	100	262 / 262	ABOBKH010000016.1 Salmonella enterica strain PNUSAS356166 SAMN35734623-rid18391693.denovo.19, whole genome shotgun sequence	3378..3639																																																avrA	ABOBKH010000003.1	552950..553819	99.54	870	0						
GCA_032829855.1_PDT001779566.1_genomic.fna	Salmonella_enterica	0.5201	272.585 KB	6	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBKG010000001.1 Salmonella enterica strain PNUSAS356155 SAMN35734626-rid18393243.denovo.01, whole genome shotgun sequence	671395..671832	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBKG010000034.1 Salmonella enterica strain PNUSAS356155 SAMN35734626-rid18393243.guided.19, whole genome shotgun sequence	38342..38779	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOBKG010000026.1 Salmonella enterica strain PNUSAS356155 SAMN35734626-rid18393243.denovo.29, whole genome shotgun sequence	5525..5666																																																						avrA	ABOBKG010000005.1	93877..94746	99.425	870	0						
GCA_032829895.1_PDT001779565.1_genomic.fna	Salmonella_enterica	0.5207	214.994 KB	9	aroC_111,dnaN_109,hemD_17,hisD_149,purE_41,sucA_13,thrA_23	451	28:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pKPC-CAV1321	aroC	100	100	aroC_111	dnaN	100	100	dnaN_109	hemD	100	100	hemD_17	hisD	100	100	hisD_149	purE	100	100	purE_41	sucA	100	100	sucA_13	thrA	100	100	thrA_23	28	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Pomona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBKI010000006.1 Salmonella enterica strain PNUSAS356156 SAMN35734624-rid18391683.denovo.06, whole genome shotgun sequence	151873..152310	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBKI010000095.1 Salmonella enterica strain PNUSAS356156 SAMN35734624-rid18391683.guided.31, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1321	94.11	594 / 596	ABOBKI010000021.1 Salmonella enterica strain PNUSAS356156 SAMN35734624-rid18391683.denovo.21, whole genome shotgun sequence	51020..51613																																																						avrA	ABOBKI010000008.1	140398..141267	99.54	870	0						
GCA_032829995.1_PDT001779563.1_genomic.fna	Salmonella_enterica	0.5208	238.812 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B),tet(B)	0		1	IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBKP010000002.1 Salmonella enterica strain PNUSAS356165 SAMN35734629-rid18393233.denovo.02, whole genome shotgun sequence	145428..145865	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOBKP010000039.1 Salmonella enterica strain PNUSAS356165 SAMN35734629-rid18393233.denovo.44, whole genome shotgun sequence	555..1370	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	EU722351	aph(6)-Id	100	837/837	ABOBKP010000043.1 Salmonella enterica strain PNUSAS356165 SAMN35734629-rid18393233.denovo.49, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBKP010000043.1 Salmonella enterica strain PNUSAS356165 SAMN35734629-rid18393233.denovo.49, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOBKP010000083.1 Salmonella enterica strain PNUSAS356165 SAMN35734629-rid18393233.guided.35, whole genome shotgun sequence	6566..7003	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOBKP010000086.1 Salmonella enterica strain PNUSAS356165 SAMN35734629-rid18393233.guided.47, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBKP010000086.1 Salmonella enterica strain PNUSAS356165 SAMN35734629-rid18393233.guided.47, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOBKP010000087.1 Salmonella enterica strain PNUSAS356165 SAMN35734629-rid18393233.guided.57, whole genome shotgun sequence	142..957	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	EU722351	blaTEM-1B	100	861/861	ABOBKP010000061.1 Salmonella enterica strain PNUSAS356165 SAMN35734629-rid18393233.denovo.68, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOBKP010000088.1 Salmonella enterica strain PNUSAS356165 SAMN35734629-rid18393233.guided.70, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOBKP010000043.1 Salmonella enterica strain PNUSAS356165 SAMN35734629-rid18393233.denovo.49, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOBKP010000086.1 Salmonella enterica strain PNUSAS356165 SAMN35734629-rid18393233.guided.47, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOBKP010000035.1 Salmonella enterica strain PNUSAS356165 SAMN35734629-rid18393233.denovo.40, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOBKP010000084.1 Salmonella enterica strain PNUSAS356165 SAMN35734629-rid18393233.guided.38, whole genome shotgun sequence	4117..5322	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABOBKP010000085.1 Salmonella enterica strain PNUSAS356165 SAMN35734629-rid18393233.guided.39, whole genome shotgun sequence	4117..5322	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																			enterobacteriales	IncY	99.72	724 / 765	ABOBKP010000045.1 Salmonella enterica strain PNUSAS356165 SAMN35734629-rid18393233.denovo.51, whole genome shotgun sequence	1..724																																																						avrA	ABOBKP010000001.1	540625..541494	99.885	870	0						
GCA_032830035.1_PDT001779564.1_genomic.fna	Salmonella_enterica	0.523	268.62 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aac(3)-VIa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,aac(3)-VIa,sul1,sul1	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBKO010000001.1 Salmonella enterica strain PNUSAS356167 SAMN35734628-rid18391533.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	99.89	903/903	ABOBKO010000018.1 Salmonella enterica strain PNUSAS356167 SAMN35734628-rid18391533.denovo.18, whole genome shotgun sequence	31356..32258	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	99.75	792/792	ABOBKO010000018.1 Salmonella enterica strain PNUSAS356167 SAMN35734628-rid18391533.denovo.18, whole genome shotgun sequence	30401..31192	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOBKO010000018.1 Salmonella enterica strain PNUSAS356167 SAMN35734628-rid18391533.denovo.18, whole genome shotgun sequence	30401..31192	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOBKO010000038.1 Salmonella enterica strain PNUSAS356167 SAMN35734628-rid18391533.guided.22, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOBKO010000040.1 Salmonella enterica strain PNUSAS356167 SAMN35734628-rid18391533.guided.31, whole genome shotgun sequence	5868..6659	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOBKO010000040.1 Salmonella enterica strain PNUSAS356167 SAMN35734628-rid18391533.guided.31, whole genome shotgun sequence	5868..6659	Spectinomycin, Streptomycin	JQ414041	aac(3)-VIa	99.89	903/903	ABOBKO010000041.1 Salmonella enterica strain PNUSAS356167 SAMN35734628-rid18391533.guided.32, whole genome shotgun sequence	37..939	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	sul1	100	840/840	ABOBKO010000018.1 Salmonella enterica strain PNUSAS356167 SAMN35734628-rid18391533.denovo.18, whole genome shotgun sequence	38258..39097	Sulfamethoxazole	U12338	sul1	100	840/840	ABOBKO010000042.1 Salmonella enterica strain PNUSAS356167 SAMN35734628-rid18391533.guided.33, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBKO010000018.1 Salmonella enterica strain PNUSAS356167 SAMN35734628-rid18391533.denovo.18, whole genome shotgun sequence	48619..48760																																																						avrA	ABOBKO010000006.1	93814..94683	99.655	870	0						
GCA_032830395.1_PDT001779543.1_genomic.fna	Salmonella_enterica	0.5208	401.872 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBLH010000011.1 Salmonella enterica strain PNUSAS356100 SAMN35733971-rid18391463.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBLH010000052.1 Salmonella enterica strain PNUSAS356100 SAMN35733971-rid18391463.guided.25, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOBLH010000019.1 Salmonella enterica strain PNUSAS356100 SAMN35733971-rid18391463.denovo.19, whole genome shotgun sequence	34957..35490																																																						avrA	ABOBLH010000001.1	219648..220514	98.966	870	0						
GCA_032830435.1_PDT001779542.1_genomic.fna	Salmonella_enterica	0.5193	366.364 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBLI010000001.1 Salmonella enterica strain PNUSAS356096 SAMN35733970-rid18390943.denovo.01, whole genome shotgun sequence	486107..486544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBLI010000040.1 Salmonella enterica strain PNUSAS356096 SAMN35733970-rid18390943.guided.28, whole genome shotgun sequence	4617..5054	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOBLI010000004.1 Salmonella enterica strain PNUSAS356096 SAMN35733970-rid18390943.denovo.04, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOBLI010000041.1 Salmonella enterica strain PNUSAS356096 SAMN35733970-rid18390943.guided.29, whole genome shotgun sequence	6426..6848	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBLI010000002.1	120619..121488	99.195	870	0						
GCA_032830455.1_PDT001779535.1_genomic.fna	Salmonella_enterica	0.5202	306.709 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_786,thrA_7	4875	4:f,g,s:-	5	aac(6')-Iaa,aadA7,aac(6')-Iaa,aadA7,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_786	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBLK010000001.1 Salmonella enterica strain PNUSAS356097 SAMN35733969-rid18391413.denovo.01, whole genome shotgun sequence	483564..484001	Amikacin, Tobramycin	NC_003197	aadA7	99	798/798	ABOBLK010000013.1 Salmonella enterica strain PNUSAS356097 SAMN35733969-rid18391413.denovo.13, whole genome shotgun sequence	56625..57422	Spectinomycin, Streptomycin	AF224733	aac(6')-Iaa	97.95	438/438	ABOBLK010000040.1 Salmonella enterica strain PNUSAS356097 SAMN35733969-rid18391413.guided.32, whole genome shotgun sequence	10439..10876	Amikacin, Tobramycin	NC_003197	aadA7	99	798/798	ABOBLK010000042.1 Salmonella enterica strain PNUSAS356097 SAMN35733969-rid18391413.guided.34, whole genome shotgun sequence	1841..2638	Spectinomycin, Streptomycin	AF224733	fosA7	97.16	423/423	ABOBLK010000004.1 Salmonella enterica strain PNUSAS356097 SAMN35733969-rid18391413.denovo.04, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOBLK010000041.1 Salmonella enterica strain PNUSAS356097 SAMN35733969-rid18391413.guided.33, whole genome shotgun sequence	6652..7074	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABOBLK010000013.1 Salmonella enterica strain PNUSAS356097 SAMN35733969-rid18391413.denovo.13, whole genome shotgun sequence	57927..58766	Sulfamethoxazole	U12338	sul1	100	840/840	ABOBLK010000042.1 Salmonella enterica strain PNUSAS356097 SAMN35733969-rid18391413.guided.34, whole genome shotgun sequence	3143..3982	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOBLK010000013.1 Salmonella enterica strain PNUSAS356097 SAMN35733969-rid18391413.denovo.13, whole genome shotgun sequence	68062..69261	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOBLK010000043.1 Salmonella enterica strain PNUSAS356097 SAMN35733969-rid18391413.guided.35, whole genome shotgun sequence	3931..5130	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBLK010000002.1	67021..67890	99.195	870	0						
GCA_032830495.1_PDT001779529.1_genomic.fna	Salmonella_enterica	0.5219	268.335 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	3	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBLO010000003.1 Salmonella enterica strain PNUSAS356095 SAMN35733956-rid18391363.denovo.03, whole genome shotgun sequence	68303..68740	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOBLO010000041.1 Salmonella enterica strain PNUSAS356095 SAMN35733956-rid18391363.denovo.46, whole genome shotgun sequence	137..952	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	aac(6')-Iaa	99.77	438/438	ABOBLO010000052.1 Salmonella enterica strain PNUSAS356095 SAMN35733956-rid18391363.guided.19, whole genome shotgun sequence	32844..33281	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOBLO010000056.1 Salmonella enterica strain PNUSAS356095 SAMN35733956-rid18391363.guided.44, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	tet(A)	100	1200/1200	ABOBLO010000018.1 Salmonella enterica strain PNUSAS356095 SAMN35733956-rid18391363.denovo.18, whole genome shotgun sequence	66277..67476	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOBLO010000055.1 Salmonella enterica strain PNUSAS356095 SAMN35733956-rid18391363.guided.36, whole genome shotgun sequence	4116..5315	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFIB(S)	100	643 / 643	ABOBLO010000026.1 Salmonella enterica strain PNUSAS356095 SAMN35733956-rid18391363.denovo.28, whole genome shotgun sequence	25361..26003	enterobacteriales	IncFII(S)	100	262 / 262	ABOBLO010000031.1 Salmonella enterica strain PNUSAS356095 SAMN35733956-rid18391363.denovo.34, whole genome shotgun sequence	10128..10389		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBLO010000018.1 Salmonella enterica strain PNUSAS356095 SAMN35733956-rid18391363.denovo.18, whole genome shotgun sequence	72839..72980		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBLO010000055.1 Salmonella enterica strain PNUSAS356095 SAMN35733956-rid18391363.guided.36, whole genome shotgun sequence	10678..10819																																		avrA	ABOBLO010000007.1	94133..95001	100	869	0						
GCA_032830515.1_PDT001779528.1_genomic.fna	Salmonella_enterica	0.5222	269.596 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBLN010000001.1 Salmonella enterica strain PNUSAS356099 SAMN35733955-rid18390903.denovo.01, whole genome shotgun sequence	460175..460612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOBLN010000030.1 Salmonella enterica strain PNUSAS356099 SAMN35733955-rid18390903.guided.21, whole genome shotgun sequence	18169..18606	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBLN010000002.1	149828..150697	99.655	870	0						
GCA_032830695.1_PDT001779512.1_genomic.fna	Salmonella_enterica	0.52	324.361 KB	5	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBLY010000001.1 Salmonella enterica strain PNUSAS356070 SAMN35733153-rid18390843.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBLY010000047.1 Salmonella enterica strain PNUSAS356070 SAMN35733153-rid18390843.guided.18, whole genome shotgun sequence	21824..22261	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBLY010000014.1 Salmonella enterica strain PNUSAS356070 SAMN35733153-rid18390843.denovo.14, whole genome shotgun sequence	39738..40380	enterobacteriales	IncFII(S)	100	262 / 262	ABOBLY010000014.1 Salmonella enterica strain PNUSAS356070 SAMN35733153-rid18390843.denovo.14, whole genome shotgun sequence	55465..55726		enterobacteriales	IncX1	98.13	374 / 377	ABOBLY010000019.1 Salmonella enterica strain PNUSAS356070 SAMN35733153-rid18390843.denovo.20, whole genome shotgun sequence	31782..32155																																									avrA	ABOBLY010000004.1	207673..208542	99.885	870	0						
GCA_032830715.1_PDT001779515.1_genomic.fna	Salmonella_enterica	0.5196	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOBLV010000010.1 Salmonella enterica strain PNUSAS356073 SAMN35733150-rid18391283.denovo.10, whole genome shotgun sequence	29754..30188	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOBLV010000056.1 Salmonella enterica strain PNUSAS356073 SAMN35733150-rid18391283.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																																						
GCA_032830735.1_PDT001779517.1_genomic.fna	Salmonella_enterica	0.5222	227.478 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBLU010000001.1 Salmonella enterica strain PNUSAS356074 SAMN35733149-rid18390863.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOBLU010000042.1 Salmonella enterica strain PNUSAS356074 SAMN35733149-rid18390863.guided.26, whole genome shotgun sequence	8080..8517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBLU010000002.1	149551..150420	99.655	870	0						
GCA_032830755.1_PDT001779513.1_genomic.fna	Salmonella_enterica	0.5217	296.95 KB	6	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOBLX010000005.1 Salmonella enterica strain PNUSAS356091 SAMN35733451-rid18391263.denovo.05, whole genome shotgun sequence	145111..145548	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOBLX010000033.1 Salmonella enterica strain PNUSAS356091 SAMN35733451-rid18391263.guided.28, whole genome shotgun sequence	4524..4961	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBLX010000001.1	552346..553215	99.77	870	0						
GCA_032830775.1_PDT001779510.1_genomic.fna	Salmonella_enterica	0.5213	405.842 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncFII(p96A)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	ABOBMA010000001.1 Salmonella enterica strain PNUSAS356071 SAMN35733152-rid18391243.denovo.01, whole genome shotgun sequence	290706..291143	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABOBMA010000029.1 Salmonella enterica strain PNUSAS356071 SAMN35733152-rid18391243.guided.16, whole genome shotgun sequence	19525..19962	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBMA010000019.1 Salmonella enterica strain PNUSAS356071 SAMN35733152-rid18391243.denovo.21, whole genome shotgun sequence	13462..14104	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOBMA010000021.1 Salmonella enterica strain PNUSAS356071 SAMN35733152-rid18391243.denovo.24, whole genome shotgun sequence	9280..9539		enterobacteriales	IncFII(p96A)	98.88	534 / 534	ABOBMA010000014.1 Salmonella enterica strain PNUSAS356071 SAMN35733152-rid18391243.denovo.14, whole genome shotgun sequence	14289..14822																																									avrA	ABOBMA010000002.1	507742..508611	99.54	870	0						
GCA_032830785.1_PDT001779508.1_genomic.fna	Salmonella_enterica	0.5228	393.945 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBMB010000001.1 Salmonella enterica strain PNUSAS356093 SAMN35733453-rid18390833.denovo.01, whole genome shotgun sequence	153371..153808	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBMB010000032.1 Salmonella enterica strain PNUSAS356093 SAMN35733453-rid18390833.guided.22, whole genome shotgun sequence	4194..4631	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032830815.1_PDT001779511.1_genomic.fna	Salmonella_enterica	0.5208	283.017 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBLZ010000003.1 Salmonella enterica strain PNUSAS356092 SAMN35733452-rid18391253.denovo.03, whole genome shotgun sequence	162458..162895	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBLZ010000035.1 Salmonella enterica strain PNUSAS356092 SAMN35733452-rid18391253.guided.23, whole genome shotgun sequence	482..919	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBLZ010000025.1 Salmonella enterica strain PNUSAS356092 SAMN35733452-rid18391253.denovo.28, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOBLZ010000027.1 Salmonella enterica strain PNUSAS356092 SAMN35733452-rid18391253.denovo.30, whole genome shotgun sequence	3413..3674																																																avrA	ABOBLZ010000001.1	584931..585800	99.54	870	0						
GCA_032830835.1_PDT001779507.1_genomic.fna	Salmonella_enterica	0.521	364.029 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_547	2370	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncN2	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_547	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBMC010000001.1 Salmonella enterica strain PNUSAS356090 SAMN35733450-rid18390823.denovo.01, whole genome shotgun sequence	845398..845835	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBMC010000028.1 Salmonella enterica strain PNUSAS356090 SAMN35733450-rid18390823.guided.18, whole genome shotgun sequence	24226..24663	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncN2	98.74	477 / 477	ABOBMC010000021.1 Salmonella enterica strain PNUSAS356090 SAMN35733450-rid18390823.denovo.22, whole genome shotgun sequence	24488..24964																																																						avrA	ABOBMC010000013.1	99141..100010	99.195	870	0						
GCA_032830855.1_PDT001779506.1_genomic.fna	Salmonella_enterica	0.5199	329.762 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBMD010000001.1 Salmonella enterica strain PNUSAS355902 SAMN35733135-rid18390813.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBMD010000031.1 Salmonella enterica strain PNUSAS355902 SAMN35733135-rid18390813.guided.22, whole genome shotgun sequence	31520..31957	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOBMD010000003.1 Salmonella enterica strain PNUSAS355902 SAMN35733135-rid18390813.denovo.03, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOBMD010000034.1 Salmonella enterica strain PNUSAS355902 SAMN35733135-rid18390813.guided.28, whole genome shotgun sequence	2714..3136	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBMD010000002.1	150337..151206	99.195	870	0						
GCA_032830895.1_PDT001779501.1_genomic.fna	Salmonella_enterica	0.5205	207.444 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBMG010000001.1 Salmonella enterica strain PNUSAS356072 SAMN35733151-rid18391193.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBMG010000049.1 Salmonella enterica strain PNUSAS356072 SAMN35733151-rid18391193.guided.27, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI2(Delta)	100	316 / 316	ABOBMG010000022.1 Salmonella enterica strain PNUSAS356072 SAMN35733151-rid18391193.denovo.22, whole genome shotgun sequence	26502..26817																																																						avrA	ABOBMG010000003.1	208058..208926	99.77	870	0						
GCA_032830915.1_PDT001779504.1_genomic.fna	Salmonella_enterica	0.5218	402.378 KB	4	aroC_157,dnaN_142,hemD_49,hisD_16,purE_40,sucA_35,thrA_3	505	4:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_157	dnaN	100	100	dnaN_142	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_3	4	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Bredeney		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOBME010000001.1 Salmonella enterica strain PNUSAS356094 SAMN35733454-rid18391213.denovo.01, whole genome shotgun sequence	814273..814710	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOBME010000026.1 Salmonella enterica strain PNUSAS356094 SAMN35733454-rid18391213.guided.20, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032833735.1_PDT001779212.1_genomic.fna	Salmonella_enterica	0.5213	489.869 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBMP010000001.1 Salmonella enterica strain PNUSAS356009 SAMN35732870-rid18387653.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBMP010000025.1 Salmonella enterica strain PNUSAS356009 SAMN35732870-rid18387653.guided.14, whole genome shotgun sequence	32327..32764	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBMP010000016.1 Salmonella enterica strain PNUSAS356009 SAMN35732870-rid18387653.denovo.18, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABOBMP010000017.1 Salmonella enterica strain PNUSAS356009 SAMN35732870-rid18387653.denovo.20, whole genome shotgun sequence	3393..3654																																																avrA	ABOBMP010000002.1	553678..554547	99.54	870	0						
GCA_032833795.1_PDT001779211.1_genomic.fna	Salmonella_enterica	0.5208	269.736 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_1	1838	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBMR010000003.1 Salmonella enterica strain PNUSAS355998 SAMN35732864-rid18388243.denovo.03, whole genome shotgun sequence	112894..113331	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBMR010000041.1 Salmonella enterica strain PNUSAS355998 SAMN35732864-rid18388243.guided.24, whole genome shotgun sequence	42435..42872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOBMR010000019.1 Salmonella enterica strain PNUSAS355998 SAMN35732864-rid18388243.denovo.19, whole genome shotgun sequence	34958..35491																																																						avrA	ABOBMR010000005.1	150636..151502	98.966	870	0						
GCA_032833815.1_PDT001779209.1_genomic.fna	Salmonella_enterica	0.521	489.888 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBMS010000001.1 Salmonella enterica strain PNUSAS356001 SAMN35732867-rid18387643.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBMS010000029.1 Salmonella enterica strain PNUSAS356001 SAMN35732867-rid18387643.guided.15, whole genome shotgun sequence	42731..43168	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBMS010000018.1 Salmonella enterica strain PNUSAS356001 SAMN35732867-rid18387643.denovo.21, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOBMS010000019.1 Salmonella enterica strain PNUSAS356001 SAMN35732867-rid18387643.denovo.22, whole genome shotgun sequence	3397..3658																																																avrA	ABOBMS010000002.1	585348..586217	99.54	870	0						
GCA_032833835.1_PDT001779210.1_genomic.fna	Salmonella_enterica	0.5222	410.978 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBMQ010000001.1 Salmonella enterica strain PNUSAS356003 SAMN35732861-rid18388233.denovo.01, whole genome shotgun sequence	835309..835746	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBMQ010000022.1 Salmonella enterica strain PNUSAS356003 SAMN35732861-rid18388233.guided.13, whole genome shotgun sequence	32338..32775	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBMQ010000002.1	563791..564660	99.77	870	0						
GCA_032833855.1_PDT001779208.1_genomic.fna	Salmonella_enterica	0.5203	272.038 KB	7	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_19,thrA_1	679	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(BS512),IncI1-I(Alpha),IncI2	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBMT010000013.1 Salmonella enterica strain PNUSAS356006 SAMN35732869-rid18387633.denovo.13, whole genome shotgun sequence	37877..38314	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBMT010000042.1 Salmonella enterica strain PNUSAS356006 SAMN35732869-rid18387633.guided.29, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(BS512)	100	233 / 233	ABOBMT010000030.1 Salmonella enterica strain PNUSAS356006 SAMN35732869-rid18387633.denovo.33, whole genome shotgun sequence	400..632	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBMT010000017.1 Salmonella enterica strain PNUSAS356006 SAMN35732869-rid18387633.denovo.17, whole genome shotgun sequence	72224..72365		enterobacteriales	IncI2	100	324 / 324	ABOBMT010000022.1 Salmonella enterica strain PNUSAS356006 SAMN35732869-rid18387633.denovo.23, whole genome shotgun sequence	30055..30378																																									avrA	ABOBMT010000010.1	140396..141262	99.08	870	0						
GCA_032833875.1_PDT001779206.1_genomic.fna	Salmonella_enterica	0.5211	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBMU010000001.1 Salmonella enterica strain PNUSAS356004 SAMN35732860-rid18387623.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBMU010000028.1 Salmonella enterica strain PNUSAS356004 SAMN35732860-rid18387623.guided.19, whole genome shotgun sequence	24466..24903	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBMU010000019.1 Salmonella enterica strain PNUSAS356004 SAMN35732860-rid18387623.denovo.21, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOBMU010000020.1 Salmonella enterica strain PNUSAS356004 SAMN35732860-rid18387623.denovo.23, whole genome shotgun sequence	3408..3669																																																avrA	ABOBMU010000002.1	505545..506414	99.54	870	0						
GCA_032833895.1_PDT001779205.1_genomic.fna	Salmonella_enterica	0.5141	289.466 KB	6	aroC_33,dnaN_26,hemD_30,hisD_144,purE_464,sucA_87,thrA_134	1848	61:z52:z53	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_144	purE	100	100	purE_464	sucA	100	100	sucA_87	thrA	100	100	thrA_134	61	z52	z53	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:z52:z53		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBMV010000002.1 Salmonella enterica strain PNUSAS356008 SAMN35732871-rid18388223.denovo.02, whole genome shotgun sequence	96770..97207	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOBMV010000044.1 Salmonella enterica strain PNUSAS356008 SAMN35732871-rid18388223.guided.28, whole genome shotgun sequence	818..1255	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOBMV010000030.1 Salmonella enterica strain PNUSAS356008 SAMN35732871-rid18388223.denovo.33, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOBMV010000047.1 Salmonella enterica strain PNUSAS356008 SAMN35732871-rid18388223.guided.39, whole genome shotgun sequence	958..1602	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOBMV010000030.1 Salmonella enterica strain PNUSAS356008 SAMN35732871-rid18388223.denovo.33, whole genome shotgun sequence	1519..1649	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOBMV010000047.1 Salmonella enterica strain PNUSAS356008 SAMN35732871-rid18388223.guided.39, whole genome shotgun sequence	302..432																																																avrA	ABOBMV010000001.1	194582..195451	96.437	870	0						
GCA_032833955.1_PDT001779204.1_genomic.fna	Salmonella_enterica	0.5222	263.566 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBMW010000001.1 Salmonella enterica strain PNUSAS356000 SAMN35732863-rid18387613.denovo.01, whole genome shotgun sequence	572209..572646	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOBMW010000041.1 Salmonella enterica strain PNUSAS356000 SAMN35732863-rid18387613.guided.32, whole genome shotgun sequence	1463..1900	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOBMW010000018.1 Salmonella enterica strain PNUSAS356000 SAMN35732863-rid18387613.denovo.18, whole genome shotgun sequence	72533..72674																																																						avrA	ABOBMW010000002.1	149923..150792	99.655	870	0						
GCA_032833995.1_PDT001779198.1_genomic.fna	Salmonella_enterica	0.5213	231.836 KB	8	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBMZ010000005.1 Salmonella enterica strain PNUSAS355978 SAMN35732635-rid18387593.denovo.05, whole genome shotgun sequence	149666..150103	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBMZ010000036.1 Salmonella enterica strain PNUSAS355978 SAMN35732635-rid18387593.guided.31, whole genome shotgun sequence	12443..12880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032834015.1_PDT001779197.1_genomic.fna	Salmonella_enterica	0.5206	696.696 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBNA010000001.1 Salmonella enterica strain PNUSAS355961 SAMN35732321-rid18387583.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBNA010000029.1 Salmonella enterica strain PNUSAS355961 SAMN35732321-rid18387583.guided.24, whole genome shotgun sequence	3197..3634	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBNA010000020.1 Salmonella enterica strain PNUSAS355961 SAMN35732321-rid18387583.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOBNA010000021.1 Salmonella enterica strain PNUSAS355961 SAMN35732321-rid18387583.denovo.23, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.93	374 / 374	ABOBNA010000016.1 Salmonella enterica strain PNUSAS355961 SAMN35732321-rid18387583.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABOBNA010000002.1	553690..554559	99.54	870	0						
GCA_032834035.1_PDT001779196.1_genomic.fna	Salmonella_enterica	0.5203	260.666 KB	7	aroC_6,dnaN_7,hemD_10,hisD_10,purE_2,sucA_10,thrA_14	359	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_2	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOBNB010000002.1 Salmonella enterica strain PNUSAS355893 SAMN35732335-rid18387573.denovo.02, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOBNB010000059.1 Salmonella enterica strain PNUSAS355893 SAMN35732335-rid18387573.guided.39, whole genome shotgun sequence	5975..6412	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOBNB010000007.1	149620..150489	99.31	870	0						
GCA_032834055.1_PDT001779195.1_genomic.fna	Salmonella_enterica	0.5205	273.33 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI2	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBNC010000002.1 Salmonella enterica strain PNUSAS355896 SAMN35732332-rid18388203.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBNC010000052.1 Salmonella enterica strain PNUSAS355896 SAMN35732332-rid18388203.guided.39, whole genome shotgun sequence	653..1090	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBNC010000023.1 Salmonella enterica strain PNUSAS355896 SAMN35732332-rid18388203.denovo.23, whole genome shotgun sequence	44732..45374	enterobacteriales	IncFII(S)	100	262 / 262	ABOBNC010000023.1 Salmonella enterica strain PNUSAS355896 SAMN35732332-rid18388203.denovo.23, whole genome shotgun sequence	29386..29647		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOBNC010000019.1 Salmonella enterica strain PNUSAS355896 SAMN35732332-rid18388203.denovo.19, whole genome shotgun sequence	67182..67323		enterobacteriales	IncI2	100	324 / 324	ABOBNC010000029.1 Salmonella enterica strain PNUSAS355896 SAMN35732332-rid18388203.denovo.29, whole genome shotgun sequence	2290..2613																																		avrA	ABOBNC010000004.1	209222..210090	100	869	0						
GCA_032834075.1_PDT001779194.1_genomic.fna	Salmonella_enterica	0.5223	639.964 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOBND010000001.1 Salmonella enterica strain PNUSAS355898 SAMN35732330-rid18387563.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOBND010000019.1 Salmonella enterica strain PNUSAS355898 SAMN35732330-rid18387563.guided.15, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOBND010000002.1	553523..554392	99.77	870	0						
GCA_032834095.1_PDT001779193.1_genomic.fna	Salmonella_enterica	0.5207	173.254 KB	11	aroC_6*,dnaN_822,hemD_40,hisD_156*,purE_913*,sucA_9,thrA_84	Unknown	7:r:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFIB(pHCM2),IncFII	aroC	99.8003992015968	100	aroC_6*	dnaN	100	100	dnaN_822	hemD	100	100	hemD_40	hisD	99.8003992015968	100	hisD_156*	purE	99.749373433584	100	purE_913*	sucA	100	100	sucA_9	thrA	100	100	thrA_84	7	r	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Papuana		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBNE010000005.1 Salmonella enterica strain PNUSAS355897 SAMN35732331-rid18388193.denovo.05, whole genome shotgun sequence	72938..73375	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBNE010000055.1 Salmonella enterica strain PNUSAS355897 SAMN35732331-rid18388193.guided.44, whole genome shotgun sequence	4972..5409	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.7	644 / 643	ABOBNE010000030.1 Salmonella enterica strain PNUSAS355897 SAMN35732331-rid18388193.denovo.30, whole genome shotgun sequence	2678..3320	enterobacteriales	IncFIB(pHCM2)	99.89	875 / 875	ABOBNE010000021.1 Salmonella enterica strain PNUSAS355897 SAMN35732331-rid18388193.denovo.21, whole genome shotgun sequence	74171..75045		enterobacteriales	IncFII	97.7	261 / 261	ABOBNE010000030.1 Salmonella enterica strain PNUSAS355897 SAMN35732331-rid18388193.denovo.30, whole genome shotgun sequence	20569..20828																																									avrA	ABOBNE010000001.1	147471..148341	99.541	871	0						
GCA_032834115.1_PDT001779192.1_genomic.fna	Salmonella_enterica	0.5205	395.56 KB	4	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOBNF010000001.1 Salmonella enterica strain PNUSAS355963 SAMN35732325-rid18387553.denovo.01, whole genome shotgun sequence	543233..543670	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOBNF010000027.1 Salmonella enterica strain PNUSAS355963 SAMN35732325-rid18387553.guided.25, whole genome shotgun sequence	6742..7179	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBNF010000002.1	600578..601447	99.425	870	0						
GCA_032834135.1_PDT001779191.1_genomic.fna	Salmonella_enterica	0.5224	378.395 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBNH010000001.1 Salmonella enterica strain PNUSAS355959 SAMN35732323-rid18387543.denovo.01, whole genome shotgun sequence	91343..91780	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBNH010000039.1 Salmonella enterica strain PNUSAS355959 SAMN35732323-rid18387543.guided.30, whole genome shotgun sequence	1319..1756	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBNH010000002.1	147026..147895	98.966	870	0						
GCA_032834155.1_PDT001779189.1_genomic.fna	Salmonella_enterica	0.5222	411.847 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col8282	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBNI010000001.1 Salmonella enterica strain PNUSAS355895 SAMN35732333-rid18387533.denovo.01, whole genome shotgun sequence	676211..676648	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBNI010000025.1 Salmonella enterica strain PNUSAS355895 SAMN35732333-rid18387533.guided.19, whole genome shotgun sequence	3627..4064	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col8282	90.59	202 / 207	ABOBNI010000019.1 Salmonella enterica strain PNUSAS355895 SAMN35732333-rid18387533.denovo.23, whole genome shotgun sequence	3972..4173																																																						avrA	ABOBNI010000006.1	148153..149022	99.77	870	0						
GCA_032834165.1_PDT001779188.1_genomic.fna	Salmonella_enterica	0.5217	236.102 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBNJ010000002.1 Salmonella enterica strain PNUSAS355901 SAMN35732336-rid18387523.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBNJ010000049.1 Salmonella enterica strain PNUSAS355901 SAMN35732336-rid18387523.guided.35, whole genome shotgun sequence	2633..3070	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBNJ010000023.1 Salmonella enterica strain PNUSAS355901 SAMN35732336-rid18387523.denovo.23, whole genome shotgun sequence	44728..45370	enterobacteriales	IncFII(S)	100	262 / 262	ABOBNJ010000023.1 Salmonella enterica strain PNUSAS355901 SAMN35732336-rid18387523.denovo.23, whole genome shotgun sequence	29382..29643		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOBNJ010000020.1 Salmonella enterica strain PNUSAS355901 SAMN35732336-rid18387523.denovo.20, whole genome shotgun sequence	66855..66996																																									avrA	ABOBNJ010000006.1	97953..98821	100	869	0						
GCA_032834195.1_PDT001779190.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBNG010000001.1 Salmonella enterica strain PNUSAS355960 SAMN35732322-rid18388183.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBNG010000027.1 Salmonella enterica strain PNUSAS355960 SAMN35732322-rid18388183.guided.22, whole genome shotgun sequence	1401..1838	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBNG010000017.1 Salmonella enterica strain PNUSAS355960 SAMN35732322-rid18388183.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOBNG010000019.1 Salmonella enterica strain PNUSAS355960 SAMN35732322-rid18388183.denovo.20, whole genome shotgun sequence	3395..3656																																																avrA	ABOBNG010000002.1	553636..554505	99.54	870	0						
GCA_032834215.1_PDT001779187.1_genomic.fna	Salmonella_enterica	0.5182	365.758 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBNL010000001.1 Salmonella enterica strain PNUSAS355894 SAMN35732334-rid18387513.denovo.01, whole genome shotgun sequence	494747..495184	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBNL010000037.1 Salmonella enterica strain PNUSAS355894 SAMN35732334-rid18387513.guided.22, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOBNL010000004.1 Salmonella enterica strain PNUSAS355894 SAMN35732334-rid18387513.denovo.04, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOBNL010000038.1 Salmonella enterica strain PNUSAS355894 SAMN35732334-rid18387513.guided.27, whole genome shotgun sequence	16565..16987	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBNL010000002.1	173924..174793	99.195	870	0						
GCA_032834235.1_PDT001779186.1_genomic.fna	Salmonella_enterica	0.5214	335.442 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBNK010000001.1 Salmonella enterica strain PNUSAS355899 SAMN35732320-rid18387503.denovo.01, whole genome shotgun sequence	454799..455236	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	413/438	ABOBNK010000036.1 Salmonella enterica strain PNUSAS355899 SAMN35732320-rid18387503.guided.27, whole genome shotgun sequence	1..413	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOBNK010000014.1 Salmonella enterica strain PNUSAS355899 SAMN35732320-rid18387503.denovo.14, whole genome shotgun sequence	68638..69843	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOBNK010000034.1 Salmonella enterica strain PNUSAS355899 SAMN35732320-rid18387503.guided.22, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOBNK010000024.1 Salmonella enterica strain PNUSAS355899 SAMN35732320-rid18387503.denovo.28, whole genome shotgun sequence	547..675	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBNK010000014.1 Salmonella enterica strain PNUSAS355899 SAMN35732320-rid18387503.denovo.14, whole genome shotgun sequence	76229..76370		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBNK010000034.1 Salmonella enterica strain PNUSAS355899 SAMN35732320-rid18387503.guided.22, whole genome shotgun sequence	3169..3310																																									avrA	ABOBNK010000006.1	147026..147895	98.966	870	0						
GCA_032834255.1_PDT001779183.1_genomic.fna	Salmonella_enterica	0.5199	277.931 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	11	aac(6')-Iaa,aadA1,aadA1,aph(3')-IIa,aac(6')-Iaa,aadA1,aadA1,aph(3')-IIa,blaOXA-10,blaOXA-10,fosA7,fosA7,floR,cmlA1,cmlA1,floR,qnrS1,qnrS1,ARR-2,ARR-2,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncX1	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBNP010000001.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.denovo.01, whole genome shotgun sequence	486111..486548	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOBNP010000033.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.denovo.38, whole genome shotgun sequence	3046..3837	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOBNP010000033.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.denovo.38, whole genome shotgun sequence	3046..3837	Spectinomycin, Streptomycin	JQ414041	aph(3')-IIa	100	795/795	ABOBNP010000036.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.denovo.44, whole genome shotgun sequence	1458..2252	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	aac(6')-Iaa	97.95	438/438	ABOBNP010000046.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.guided.34, whole genome shotgun sequence	5227..5664	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOBNP010000048.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.guided.36, whole genome shotgun sequence	3087..3878	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOBNP010000048.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.guided.36, whole genome shotgun sequence	3087..3878	Spectinomycin, Streptomycin	JQ414041	aph(3')-IIa	100	795/795	ABOBNP010000051.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.guided.43, whole genome shotgun sequence	1499..2293	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	blaOXA-10	100	801/801	ABOBNP010000033.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.denovo.38, whole genome shotgun sequence	2229..3029	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaOXA-10	100	801/801	ABOBNP010000048.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.guided.36, whole genome shotgun sequence	2270..3070	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	fosA7	97.16	423/423	ABOBNP010000005.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOBNP010000045.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.guided.29, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014	floR	98.19	1214/1215	ABOBNP010000028.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.denovo.30, whole genome shotgun sequence	8125..9338	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.68	1260/1260	ABOBNP010000033.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.denovo.38, whole genome shotgun sequence	705..1964	Chloramphenicol	M64556	cmlA1	99.68	1260/1260	ABOBNP010000048.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.guided.36, whole genome shotgun sequence	746..2005	Chloramphenicol	M64556	floR	98.19	1214/1215	ABOBNP010000049.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.guided.39, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABOBNP010000028.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.denovo.30, whole genome shotgun sequence	1014..1670	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOBNP010000047.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.guided.35, whole genome shotgun sequence	1055..1711	Ciprofloxacin	AB187515	ARR-2	100	384/453	ABOBNP010000033.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.denovo.38, whole genome shotgun sequence	1..384	Rifampicin	HQ141279	ARR-2	100	385/453	ABOBNP010000048.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.guided.36, whole genome shotgun sequence	41..425	Rifampicin	HQ141279	tet(A)	100	1275/1275	ABOBNP010000028.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.denovo.30, whole genome shotgun sequence	6250..7524	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOBNP010000047.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.guided.35, whole genome shotgun sequence	6291..7565	Doxycycline, Tetracycline	AF534183	dfrA14	100	474/474	ABOBNP010000033.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.denovo.38, whole genome shotgun sequence	3912..4385	Trimethoprim	KF921535	dfrA14	100	474/474	ABOBNP010000048.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.guided.36, whole genome shotgun sequence	3953..4426	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncX1	98.4	374 / 374	ABOBNP010000030.1 Salmonella enterica strain PNUSAS355964 SAMN35732293-rid18388163.denovo.32, whole genome shotgun sequence	7364..7737																																																						avrA	ABOBNP010000009.1	105329..106198	99.195	870	0						
GCA_032834275.1_PDT001779185.1_genomic.fna	Salmonella_enterica	0.522	410.561 KB	4	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOBNM010000001.1 Salmonella enterica strain PNUSAS355958 SAMN35732324-rid18388173.denovo.01, whole genome shotgun sequence	390392..390829	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOBNM010000023.1 Salmonella enterica strain PNUSAS355958 SAMN35732324-rid18388173.guided.18, whole genome shotgun sequence	3924..4361	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOBNM010000004.1	151159..152028	99.77	870	0						
GCA_032834295.1_PDT001779184.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBNN010000001.1 Salmonella enterica strain PNUSAS355965 SAMN35732292-rid18387493.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBNN010000023.1 Salmonella enterica strain PNUSAS355965 SAMN35732292-rid18387493.guided.18, whole genome shotgun sequence	11935..12372	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBNN010000017.1 Salmonella enterica strain PNUSAS355965 SAMN35732292-rid18387493.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOBNN010000018.1 Salmonella enterica strain PNUSAS355965 SAMN35732292-rid18387493.denovo.20, whole genome shotgun sequence	3414..3675																																																avrA	ABOBNN010000002.1	553636..554505	99.54	870	0						
GCA_032834315.1_PDT001779182.1_genomic.fna	Salmonella_enterica	0.5218	236.084 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBNO010000002.1 Salmonella enterica strain PNUSAS355900 SAMN35732319-rid18387483.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBNO010000043.1 Salmonella enterica strain PNUSAS355900 SAMN35732319-rid18387483.guided.29, whole genome shotgun sequence	4260..4697	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBNO010000023.1 Salmonella enterica strain PNUSAS355900 SAMN35732319-rid18387483.denovo.23, whole genome shotgun sequence	44750..45392	enterobacteriales	IncFII(S)	100	262 / 262	ABOBNO010000023.1 Salmonella enterica strain PNUSAS355900 SAMN35732319-rid18387483.denovo.23, whole genome shotgun sequence	29404..29665																																																avrA	ABOBNO010000001.1	446747..447615	100	869	0						
GCA_032834325.1_PDT001779181.1_genomic.fna	Salmonella_enterica	0.5198	336.896 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(S)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOBNQ010000002.1 Salmonella enterica strain PNUSAS355962 SAMN35732289-rid18387473.denovo.02, whole genome shotgun sequence	579091..579528	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOBNQ010000044.1 Salmonella enterica strain PNUSAS355962 SAMN35732289-rid18387473.guided.27, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOBNQ010000017.1 Salmonella enterica strain PNUSAS355962 SAMN35732289-rid18387473.denovo.17, whole genome shotgun sequence	78433..79075	enterobacteriales	IncFII(S)	92.37	262 / 262	ABOBNQ010000017.1 Salmonella enterica strain PNUSAS355962 SAMN35732289-rid18387473.denovo.17, whole genome shotgun sequence	45915..46173																																																avrA	ABOBNQ010000001.1	108335..109204	98.966	870	0						
GCA_032834355.1_PDT001779179.1_genomic.fna	Salmonella_enterica	0.5214	406.317 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBNS010000001.1 Salmonella enterica strain PNUSAS355970 SAMN35732296-rid18387463.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBNS010000024.1 Salmonella enterica strain PNUSAS355970 SAMN35732296-rid18387463.guided.19, whole genome shotgun sequence	12448..12885	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBNS010000018.1 Salmonella enterica strain PNUSAS355970 SAMN35732296-rid18387463.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOBNS010000020.1 Salmonella enterica strain PNUSAS355970 SAMN35732296-rid18387463.denovo.21, whole genome shotgun sequence	3402..3663																																																avrA	ABOBNS010000002.1	553626..554495	99.54	870	0						
GCA_032834375.1_PDT001779178.1_genomic.fna	Salmonella_enterica	0.5228	363.954 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBNT010000001.1 Salmonella enterica strain PNUSAS355968 SAMN35732298-rid18388143.denovo.01, whole genome shotgun sequence	454794..455231	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBNT010000028.1 Salmonella enterica strain PNUSAS355968 SAMN35732298-rid18388143.guided.20, whole genome shotgun sequence	4788..5225	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBNT010000004.1	183141..184010	98.966	870	0						
GCA_032834395.1_PDT001779180.1_genomic.fna	Salmonella_enterica	0.5223	397.881 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOBNR010000001.1 Salmonella enterica strain PNUSAS355972 SAMN35732294-rid18388153.denovo.01, whole genome shotgun sequence	132452..132889	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOBNR010000025.1 Salmonella enterica strain PNUSAS355972 SAMN35732294-rid18388153.guided.20, whole genome shotgun sequence	9529..9966	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOBNR010000003.1	401502..402371	99.77	870	0						
GCA_032834415.1_PDT001779177.1_genomic.fna	Salmonella_enterica	0.5214	406.794 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBNU010000001.1 Salmonella enterica strain PNUSAS355966 SAMN35732291-rid18387453.denovo.01, whole genome shotgun sequence	176096..176533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBNU010000033.1 Salmonella enterica strain PNUSAS355966 SAMN35732291-rid18387453.guided.27, whole genome shotgun sequence	259..696	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBNU010000022.1 Salmonella enterica strain PNUSAS355966 SAMN35732291-rid18387453.denovo.22, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOBNU010000024.1 Salmonella enterica strain PNUSAS355966 SAMN35732291-rid18387453.denovo.25, whole genome shotgun sequence	3392..3653																																																avrA	ABOBNU010000002.1	553637..554506	99.54	870	0						
GCA_032834435.1_PDT001779176.1_genomic.fna	Salmonella_enterica	0.5214	400.829 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBNV010000001.1 Salmonella enterica strain PNUSAS355969 SAMN35732297-rid18387443.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBNV010000029.1 Salmonella enterica strain PNUSAS355969 SAMN35732297-rid18387443.guided.24, whole genome shotgun sequence	9441..9878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBNV010000020.1 Salmonella enterica strain PNUSAS355969 SAMN35732297-rid18387443.denovo.20, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABOBNV010000016.1 Salmonella enterica strain PNUSAS355969 SAMN35732297-rid18387443.denovo.16, whole genome shotgun sequence	37059..37320																																																avrA	ABOBNV010000002.1	553636..554505	99.54	870	0						
GCA_032834455.1_PDT001779174.1_genomic.fna	Salmonella_enterica	0.5214	283.98 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBNX010000004.1 Salmonella enterica strain PNUSAS355971 SAMN35732295-rid18387433.denovo.04, whole genome shotgun sequence	56448..56885	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBNX010000035.1 Salmonella enterica strain PNUSAS355971 SAMN35732295-rid18387433.guided.31, whole genome shotgun sequence	2249..2686	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBNX010000026.1 Salmonella enterica strain PNUSAS355971 SAMN35732295-rid18387433.denovo.28, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOBNX010000027.1 Salmonella enterica strain PNUSAS355971 SAMN35732295-rid18387433.denovo.29, whole genome shotgun sequence	3278..3539																																																avrA	ABOBNX010000001.1	553101..553970	99.54	870	0						
GCA_032834475.1_PDT001779175.1_genomic.fna	Salmonella_enterica	0.5207	412.187 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,sul2,tet(A),tet(A),tet(A)	0		4	IncFIB(S),IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBNW010000001.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.denovo.01, whole genome shotgun sequence	774552..774989	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOBNW010000019.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.denovo.19, whole genome shotgun sequence	18766..19602	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBNW010000019.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.denovo.19, whole genome shotgun sequence	19602..20405	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOBNW010000027.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.guided.21, whole genome shotgun sequence	7213..8049	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOBNW010000027.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.guided.21, whole genome shotgun sequence	6410..7213	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOBNW010000028.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.guided.22, whole genome shotgun sequence	7213..8049	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBNW010000028.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.guided.22, whole genome shotgun sequence	6410..7213	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABOBNW010000031.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.guided.27, whole genome shotgun sequence	5797..6234	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOBNW010000015.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.denovo.15, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOBNW010000032.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.guided.28, whole genome shotgun sequence	3944..4804	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOBNW010000019.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.denovo.19, whole genome shotgun sequence	20466..21281	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOBNW010000027.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.guided.21, whole genome shotgun sequence	5534..6349	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOBNW010000028.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.guided.22, whole genome shotgun sequence	5534..6349	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOBNW010000019.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.denovo.19, whole genome shotgun sequence	24794..25993	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOBNW010000027.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.guided.21, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOBNW010000028.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.guided.22, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBNW010000021.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.denovo.24, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOBNW010000022.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.denovo.25, whole genome shotgun sequence	3317..3578		enterobacteriales	IncN	100	514 / 514	ABOBNW010000019.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.denovo.19, whole genome shotgun sequence	459..972		enterobacteriales	IncX1	98.66	374 / 374	ABOBNW010000015.1 Salmonella enterica strain PNUSAS355967 SAMN35732290-rid18388133.denovo.15, whole genome shotgun sequence	10970..11343																																		avrA	ABOBNW010000002.1	552981..553850	99.54	870	0						
GCA_032838155.1_PDT001778812.1_genomic.fna	Salmonella_enterica	0.521	257.282 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBQX010000001.1 Salmonella enterica strain PNUSAS355455 SAMN35724668-rid18384783.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBQX010000052.1 Salmonella enterica strain PNUSAS355455 SAMN35724668-rid18384783.guided.17, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBQX010000017.1 Salmonella enterica strain PNUSAS355455 SAMN35724668-rid18384783.denovo.18, whole genome shotgun sequence	48431..49073	enterobacteriales	IncFII(S)	100	262 / 262	ABOBQX010000017.1 Salmonella enterica strain PNUSAS355455 SAMN35724668-rid18384783.denovo.18, whole genome shotgun sequence	64158..64419		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOBQX010000021.1 Salmonella enterica strain PNUSAS355455 SAMN35724668-rid18384783.denovo.22, whole genome shotgun sequence	66855..66996																																									avrA	ABOBQX010000004.1	155216..156084	100	869	0						
GCA_032838175.1_PDT001778811.1_genomic.fna	Salmonella_enterica	0.5213	447.337 KB	4	aroC_117,dnaN_135,hemD_18,hisD_12,purE_162,sucA_162,thrA_38	543	7:d:l,w	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_117	dnaN	100	100	dnaN_135	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_162	sucA	100	100	sucA_162	thrA	100	100	thrA_38	7	d	l,w	Salmonella enterica subspecies enterica (subspecies I)	Livingstone		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOBQY010000001.1 Salmonella enterica strain PNUSAS355914 SAMN35724667-rid18383763.denovo.01, whole genome shotgun sequence	719822..720259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOBQY010000031.1 Salmonella enterica strain PNUSAS355914 SAMN35724667-rid18383763.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032838195.1_PDT001778810.1_genomic.fna	Salmonella_enterica	0.5218	203.486 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBQZ010000001.1 Salmonella enterica strain PNUSAS355915 SAMN35724671-rid18384773.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOBQZ010000042.1 Salmonella enterica strain PNUSAS355915 SAMN35724671-rid18384773.guided.29, whole genome shotgun sequence	15142..15579	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBQZ010000006.1	39430..40299	99.655	870	0						
GCA_032838215.1_PDT001778808.1_genomic.fna	Salmonella_enterica	0.5226	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBRB010000001.1 Salmonella enterica strain PNUSAS355913 SAMN35724670-rid18384753.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBRB010000023.1 Salmonella enterica strain PNUSAS355913 SAMN35724670-rid18384753.guided.19, whole genome shotgun sequence	19541..19978	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBRB010000002.1	105646..106515	98.966	870	0						
GCA_032838235.1_PDT001778809.1_genomic.fna	Salmonella_enterica	0.5191	224.721 KB	6	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBRA010000002.1 Salmonella enterica strain PNUSAS355916 SAMN35724669-rid18384763.denovo.02, whole genome shotgun sequence	370303..370740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBRA010000052.1 Salmonella enterica strain PNUSAS355916 SAMN35724669-rid18384763.guided.39, whole genome shotgun sequence	5467..5904	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032846665.1_PDT001947875.1_genomic.fna	Salmonella_enterica	0.5215	265.803 KB	6	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	7	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,blaCTX-M-1,blaCTX-M-1,qnrS1,qnrS1,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOBRK010000001.1 Salmonella enterica strain PNUSAS393207 SAMN37875610-rid19905543.denovo.01, whole genome shotgun sequence	386431..386868	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOBRK010000033.1 Salmonella enterica strain PNUSAS393207 SAMN37875610-rid19905543.denovo.41, whole genome shotgun sequence	137..952	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aac(6')-Iaa	99.54	438/438	ABOBRK010000043.1 Salmonella enterica strain PNUSAS393207 SAMN37875610-rid19905543.guided.31, whole genome shotgun sequence	20662..21099	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOBRK010000048.1 Salmonella enterica strain PNUSAS393207 SAMN37875610-rid19905543.guided.40, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	blaCTX-M-1	100	876/876	ABOBRK010000024.1 Salmonella enterica strain PNUSAS393207 SAMN37875610-rid19905543.denovo.24, whole genome shotgun sequence	248..1123	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ915955	blaCTX-M-1	100	876/876	ABOBRK010000046.1 Salmonella enterica strain PNUSAS393207 SAMN37875610-rid19905543.guided.36, whole genome shotgun sequence	1737..2612	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ915955	qnrS1	100	657/657	ABOBRK010000027.1 Salmonella enterica strain PNUSAS393207 SAMN37875610-rid19905543.denovo.27, whole genome shotgun sequence	1013..1669	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOBRK010000045.1 Salmonella enterica strain PNUSAS393207 SAMN37875610-rid19905543.guided.33, whole genome shotgun sequence	1054..1710	Ciprofloxacin	AB187515	sul2	100	816/816	ABOBRK010000026.1 Salmonella enterica strain PNUSAS393207 SAMN37875610-rid19905543.denovo.26, whole genome shotgun sequence	33772..34587	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOBRK010000042.1 Salmonella enterica strain PNUSAS393207 SAMN37875610-rid19905543.guided.29, whole genome shotgun sequence	1464..2279	Sulfamethoxazole	AY034138	tet(A)	99.92	1200/1200	ABOBRK010000027.1 Salmonella enterica strain PNUSAS393207 SAMN37875610-rid19905543.denovo.27, whole genome shotgun sequence	6324..7523	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOBRK010000045.1 Salmonella enterica strain PNUSAS393207 SAMN37875610-rid19905543.guided.33, whole genome shotgun sequence	6365..7564	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOBRK010000031.1 Salmonella enterica strain PNUSAS393207 SAMN37875610-rid19905543.denovo.37, whole genome shotgun sequence	183..656	Trimethoprim	KF921535	dfrA14	100	474/474	ABOBRK010000047.1 Salmonella enterica strain PNUSAS393207 SAMN37875610-rid19905543.guided.38, whole genome shotgun sequence	1036..1509	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOBRK010000027.1 Salmonella enterica strain PNUSAS393207 SAMN37875610-rid19905543.denovo.27, whole genome shotgun sequence	13756..13897																																																						avrA	ABOBRK010000008.1	174128..174997	99.77	870	0						
GCA_032846685.1_PDT001947871.1_genomic.fna	Salmonella_enterica	0.5224	267.441 KB	6	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOBRN010000001.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.denovo.01, whole genome shotgun sequence	462724..463161	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOBRN010000036.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.denovo.40, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOBRN010000049.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.guided.24, whole genome shotgun sequence	14100..14537	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOBRN010000054.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.guided.43, whole genome shotgun sequence	2777..3556	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOBRN010000036.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.denovo.40, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOBRN010000054.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.guided.43, whole genome shotgun sequence	1781..2647	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOBRN010000035.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.denovo.39, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOBRN010000052.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.guided.38, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOBRN010000033.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.denovo.36, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOBRN010000053.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.guided.42, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOBRN010000036.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.denovo.40, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOBRN010000054.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.guided.43, whole genome shotgun sequence	865..1521	Ciprofloxacin	AY070235	sul1	100	840/840	ABOBRN010000040.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.denovo.48, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOBRN010000056.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.guided.47, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOBRN010000033.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.denovo.36, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOBRN010000055.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.guided.44, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOBRN010000033.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.denovo.36, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOBRN010000055.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.guided.44, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOBRN010000029.1 Salmonella enterica strain PNUSAS393204 SAMN37875613-rid19901683.denovo.31, whole genome shotgun sequence	4434..4684																																																						avrA	ABOBRN010000011.1	94004..94873	99.77	870	0						
GCA_032846705.1_PDT001947872.1_genomic.fna	Salmonella_enterica	0.5211	356.008 KB	4	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBRJ010000001.1 Salmonella enterica strain PNUSAS393201 SAMN37875608-rid19906523.denovo.01, whole genome shotgun sequence	375259..375696	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBRJ010000027.1 Salmonella enterica strain PNUSAS393201 SAMN37875608-rid19906523.guided.21, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBRJ010000002.1	149431..150300	99.425	870	0						
GCA_032846745.1_PDT001947868.1_genomic.fna	Salmonella_enterica	0.521	263.006 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col(BS512),Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBRM010000001.1 Salmonella enterica strain PNUSAS393205 SAMN37875614-rid19899583.denovo.01, whole genome shotgun sequence	158852..159289	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBRM010000036.1 Salmonella enterica strain PNUSAS393205 SAMN37875614-rid19899583.guided.28, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(BS512)	100	233 / 233	ABOBRM010000030.1 Salmonella enterica strain PNUSAS393205 SAMN37875614-rid19899583.denovo.33, whole genome shotgun sequence	681..913	enterobacteriales	Col156	98.03	152 / 154	ABOBRM010000026.1 Salmonella enterica strain PNUSAS393205 SAMN37875614-rid19899583.denovo.29, whole genome shotgun sequence	3229..3380		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBRM010000021.1 Salmonella enterica strain PNUSAS393205 SAMN37875614-rid19899583.denovo.21, whole genome shotgun sequence	6818..7460		enterobacteriales	IncFII(S)	100	262 / 262	ABOBRM010000021.1 Salmonella enterica strain PNUSAS393205 SAMN37875614-rid19899583.denovo.21, whole genome shotgun sequence	12910..13171																																		avrA	ABOBRM010000004.1	141082..141951	99.54	870	0						
GCA_032846765.1_PDT001947869.1_genomic.fna	Salmonella_enterica	0.5212	232.069 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBRL010000001.1 Salmonella enterica strain PNUSAS393206 SAMN37875611-rid19903693.denovo.01, whole genome shotgun sequence	505058..505495	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBRL010000044.1 Salmonella enterica strain PNUSAS393206 SAMN37875611-rid19903693.guided.21, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBRL010000029.1 Salmonella enterica strain PNUSAS393206 SAMN37875611-rid19903693.denovo.30, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOBRL010000032.1 Salmonella enterica strain PNUSAS393206 SAMN37875611-rid19903693.denovo.34, whole genome shotgun sequence	3413..3674																																																avrA	ABOBRL010000008.1	99087..99956	99.54	870	0						
GCA_032846785.1_PDT001947864.1_genomic.fna	Salmonella_enterica	0.5212	313.008 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBRP010000001.1 Salmonella enterica strain PNUSAS393200 SAMN37875601-rid19903683.denovo.01, whole genome shotgun sequence	481507..481944	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBRP010000032.1 Salmonella enterica strain PNUSAS393200 SAMN37875601-rid19903683.guided.21, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOBRP010000002.1	553517..554386	99.54	870	0						
GCA_032846795.1_PDT001947866.1_genomic.fna	Salmonella_enterica	0.5216	191.306 KB	8	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBRO010000002.1 Salmonella enterica strain PNUSAS393194 SAMN37875605-rid19900413.denovo.02, whole genome shotgun sequence	380331..380768	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBRO010000050.1 Salmonella enterica strain PNUSAS393194 SAMN37875605-rid19900413.guided.43, whole genome shotgun sequence	10373..10810	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032846845.1_PDT001947873.1_genomic.fna	Salmonella_enterica	0.5147	216.361 KB	7	aroC_65,dnaN_25,hemD_29,hisD_82,purE_20,sucA_50,thrA_51	2127	41:z4,z23:-	0		1	parC_p.T57S	2	Col(BS512),IncFII(S)	aroC	100	100	aroC_65	dnaN	100	100	dnaN_25	hemD	100	100	hemD_29	hisD	100	100	hisD_82	purE	100	100	purE_20	sucA	100	100	sucA_50	thrA	100	100	thrA_51	41	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 41:z4,z23:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(BS512)	100	233 / 233	ABOBRQ010000053.1 Salmonella enterica strain PNUSAS393208 SAMN37875615-rid19898583.denovo.55, whole genome shotgun sequence	681..913	enterobacteriales	IncFII(S)	99.62	262 / 262	ABOBRQ010000017.1 Salmonella enterica strain PNUSAS393208 SAMN37875615-rid19898583.denovo.17, whole genome shotgun sequence	3653..3914																																																											
GCA_032846865.1_PDT001947874.1_genomic.fna	Salmonella_enterica	0.5216	158.14 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBRT010000001.1 Salmonella enterica strain PNUSAS393202 SAMN37875609-rid19904493.denovo.01, whole genome shotgun sequence	457010..457447	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBRT010000062.1 Salmonella enterica strain PNUSAS393202 SAMN37875609-rid19904493.guided.40, whole genome shotgun sequence	12438..12875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBRT010000027.1 Salmonella enterica strain PNUSAS393202 SAMN37875609-rid19904493.denovo.27, whole genome shotgun sequence	44778..45420	enterobacteriales	IncFII(S)	100	262 / 262	ABOBRT010000027.1 Salmonella enterica strain PNUSAS393202 SAMN37875609-rid19904493.denovo.27, whole genome shotgun sequence	29432..29693																																																avrA	ABOBRT010000004.1	94139..95008	99.77	870	0						
GCA_032846885.1_PDT001947865.1_genomic.fna	Salmonella_enterica	0.5218	149.813 KB	9	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,blaTEM-1B,blaTEM-1B,mph(A),mph(A),floR,floR,qnrB19,qnrB19,sul2,sul2,tet(B),tet(A),tet(A),tet(B),dfrA17,dfrA17	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBRU010000001.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.denovo.01, whole genome shotgun sequence	458966..459403	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOBRU010000045.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.denovo.45, whole genome shotgun sequence	3539..4375	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBRU010000045.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.denovo.45, whole genome shotgun sequence	2736..3539	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABOBRU010000054.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.denovo.58, whole genome shotgun sequence	102..962	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aac(6')-Iaa	100	438/438	ABOBRU010000070.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.guided.46, whole genome shotgun sequence	4717..5154	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOBRU010000071.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.guided.48, whole genome shotgun sequence	2564..3400	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBRU010000071.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.guided.48, whole genome shotgun sequence	1761..2564	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABOBRU010000078.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.guided.69, whole genome shotgun sequence	75..935	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	blaTEM-1B	100	861/861	ABOBRU010000062.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.denovo.73, whole genome shotgun sequence	299..1159	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOBRU010000081.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.guided.74, whole genome shotgun sequence	282..1142	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABOBRU010000052.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.denovo.54, whole genome shotgun sequence	3276..4181	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	ABOBRU010000077.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.guided.68, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOBRU010000045.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.denovo.45, whole genome shotgun sequence	7511..8724	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOBRU010000079.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.guided.70, whole genome shotgun sequence	302..1515	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABOBRU010000057.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.denovo.61, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOBRU010000074.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.guided.62, whole genome shotgun sequence	775..1419	Ciprofloxacin	EU432277	sul2	100	816/816	ABOBRU010000045.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.denovo.45, whole genome shotgun sequence	1860..2675	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOBRU010000071.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.guided.48, whole genome shotgun sequence	885..1700	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOBRU010000043.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.denovo.43, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	99.92	1275/1275	ABOBRU010000045.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.denovo.45, whole genome shotgun sequence	5636..6910	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1275/1275	ABOBRU010000071.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.guided.48, whole genome shotgun sequence	4661..5935	Doxycycline, Tetracycline	AF534183	tet(B)	100	1206/1206	ABOBRU010000075.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.guided.63, whole genome shotgun sequence	822..2027	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA17	100	474/474	ABOBRU010000059.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.denovo.65, whole genome shotgun sequence	77..550	Trimethoprim	FJ460238	dfrA17	100	474/474	ABOBRU010000076.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.guided.66, whole genome shotgun sequence	1910..2383	Trimethoprim	FJ460238																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	100	131 / 131	ABOBRU010000057.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.denovo.61, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOBRU010000074.1 Salmonella enterica strain PNUSAS393197 SAMN37875606-rid19905533.guided.62, whole genome shotgun sequence	119..249																																																avrA	ABOBRU010000002.1	93865..94734	99.885	870	0						
GCA_032846905.1_PDT001947870.1_genomic.fna	Salmonella_enterica	0.5213	184.61 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBRR010000001.1 Salmonella enterica strain PNUSAS393203 SAMN37875612-rid19906513.denovo.01, whole genome shotgun sequence	115023..115460	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBRR010000063.1 Salmonella enterica strain PNUSAS393203 SAMN37875612-rid19906513.guided.42, whole genome shotgun sequence	20661..21098	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABOBRR010000051.1 Salmonella enterica strain PNUSAS393203 SAMN37875612-rid19906513.denovo.54, whole genome shotgun sequence	483..636																																																						avrA	ABOBRR010000005.1	158393..159261	99.77	870	0						
GCA_032846925.1_PDT001947867.1_genomic.fna	Salmonella_enterica	0.5219	438.843 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBRW010000001.1 Salmonella enterica strain PNUSAS393196 SAMN37875607-rid19904483.denovo.01, whole genome shotgun sequence	396206..396643	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBRW010000034.1 Salmonella enterica strain PNUSAS393196 SAMN37875607-rid19904483.guided.18, whole genome shotgun sequence	42396..42833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032846945.1_PDT001947862.1_genomic.fna	Salmonella_enterica	0.5216	137.773 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBRV010000002.1 Salmonella enterica strain PNUSAS393198 SAMN37875604-rid19903673.denovo.02, whole genome shotgun sequence	193040..193477	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBRV010000067.1 Salmonella enterica strain PNUSAS393198 SAMN37875604-rid19903673.guided.62, whole genome shotgun sequence	480..917	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBRV010000048.1 Salmonella enterica strain PNUSAS393198 SAMN37875604-rid19903673.denovo.49, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOBRV010000053.1 Salmonella enterica strain PNUSAS393198 SAMN37875604-rid19903673.denovo.54, whole genome shotgun sequence	3428..3689																																																avrA	ABOBRV010000003.1	174837..175706	99.54	870	0						
GCA_032846985.1_PDT001947863.1_genomic.fna	Salmonella_enterica	0.5207	376.153 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBRS010000001.1 Salmonella enterica strain PNUSAS393199 SAMN37875603-rid19898573.denovo.01, whole genome shotgun sequence	433180..433617	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBRS010000037.1 Salmonella enterica strain PNUSAS393199 SAMN37875603-rid19898573.guided.30, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBRS010000002.1	139987..140856	99.425	870	0						
GCA_032847025.1_PDT001947861.1_genomic.fna	Salmonella_enterica	0.5213	253.79 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBRX010000001.1 Salmonella enterica strain PNUSAS393195 SAMN37875602-rid19901673.denovo.01, whole genome shotgun sequence	496227..496664	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBRX010000050.1 Salmonella enterica strain PNUSAS393195 SAMN37875602-rid19901673.guided.33, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBRX010000033.1 Salmonella enterica strain PNUSAS393195 SAMN37875602-rid19901673.denovo.35, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOBRX010000037.1 Salmonella enterica strain PNUSAS393195 SAMN37875602-rid19901673.denovo.39, whole genome shotgun sequence	3414..3675																																																avrA	ABOBRX010000004.1	175197..176066	99.54	870	0						
GCA_032847145.1_PDT001947853.1_genomic.fna	Salmonella_enterica	0.521	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBSE010000001.1 Salmonella enterica strain PNUSAS392071 SAMN37875544-rid19899573.denovo.01, whole genome shotgun sequence	817597..818034	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBSE010000025.1 Salmonella enterica strain PNUSAS392071 SAMN37875544-rid19899573.guided.15, whole genome shotgun sequence	26699..27136	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBSE010000018.1 Salmonella enterica strain PNUSAS392071 SAMN37875544-rid19899573.denovo.20, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABOBSE010000019.1 Salmonella enterica strain PNUSAS392071 SAMN37875544-rid19899573.denovo.22, whole genome shotgun sequence	3392..3653																																																avrA	ABOBSE010000002.1	553361..554230	99.54	870	0						
GCA_032847165.1_PDT001947852.1_genomic.fna	Salmonella_enterica	0.5221	525.258 KB	3	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOBSG010000001.1 Salmonella enterica strain PNUSAS392069 SAMN37875540-rid19903633.denovo.01, whole genome shotgun sequence	750421..750858	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOBSG010000026.1 Salmonella enterica strain PNUSAS392069 SAMN37875540-rid19903633.guided.16, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOBSG010000012.1 Salmonella enterica strain PNUSAS392069 SAMN37875540-rid19903633.denovo.12, whole genome shotgun sequence	6073..6606																																																						avrA	ABOBSG010000004.1	406266..407135	99.54	870	0						
GCA_032847185.1_PDT001947851.1_genomic.fna	Salmonella_enterica	0.5213	255.87 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBSI010000001.1 Salmonella enterica strain PNUSAS391210 SAMN37875537-rid19901663.denovo.01, whole genome shotgun sequence	478319..478756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBSI010000034.1 Salmonella enterica strain PNUSAS391210 SAMN37875537-rid19901663.guided.22, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBSI010000002.1	145172..146041	99.31	870	0						
GCA_032847205.1_PDT001947850.1_genomic.fna	Salmonella_enterica	0.5215	665.589 KB	3	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBSH010000001.1 Salmonella enterica strain PNUSAS392079 SAMN37875543-rid19900383.denovo.01, whole genome shotgun sequence	624771..625208	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBSH010000019.1 Salmonella enterica strain PNUSAS392079 SAMN37875543-rid19900383.guided.14, whole genome shotgun sequence	915..1352	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032847225.1_PDT001947849.1_genomic.fna	Salmonella_enterica	0.521	220.73 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		5	Col156,Col156,IncFIB(S),IncFII(S),IncFII(pSE11),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBSJ010000002.1 Salmonella enterica strain PNUSAS392075 SAMN37875536-rid19904473.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBSJ010000069.1 Salmonella enterica strain PNUSAS392075 SAMN37875536-rid19904473.guided.40, whole genome shotgun sequence	11983..12420	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	90.79	152 / 154	ABOBSJ010000045.1 Salmonella enterica strain PNUSAS392075 SAMN37875536-rid19904473.denovo.48, whole genome shotgun sequence	3270..3421	enterobacteriales	Col156	93.51	154 / 154	ABOBSJ010000050.1 Salmonella enterica strain PNUSAS392075 SAMN37875536-rid19904473.denovo.53, whole genome shotgun sequence	3357..3510		enterobacteriales	IncFIB(S)	100	643 / 643	ABOBSJ010000034.1 Salmonella enterica strain PNUSAS392075 SAMN37875536-rid19904473.denovo.34, whole genome shotgun sequence	6832..7474		enterobacteriales	IncFII(S)	100	262 / 262	ABOBSJ010000042.1 Salmonella enterica strain PNUSAS392075 SAMN37875536-rid19904473.denovo.45, whole genome shotgun sequence	6419..6680		enterobacteriales	IncFII(pSE11)	99.24	264 / 264	ABOBSJ010000022.1 Salmonella enterica strain PNUSAS392075 SAMN37875536-rid19904473.denovo.22, whole genome shotgun sequence	30216..30479		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOBSJ010000036.1 Salmonella enterica strain PNUSAS392075 SAMN37875536-rid19904473.denovo.37, whole genome shotgun sequence	618..759																				avrA	ABOBSJ010000001.1	401457..402325	100	869	0						
GCA_032847245.1_PDT001947848.1_genomic.fna	Salmonella_enterica	0.5218	322.099 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBSL010000001.1 Salmonella enterica strain PNUSAS392080 SAMN37875547-rid19898553.denovo.01, whole genome shotgun sequence	482686..483123	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBSL010000044.1 Salmonella enterica strain PNUSAS392080 SAMN37875547-rid19898553.guided.30, whole genome shotgun sequence	10534..10971	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBSL010000027.1 Salmonella enterica strain PNUSAS392080 SAMN37875547-rid19898553.denovo.27, whole genome shotgun sequence	24677..25319	enterobacteriales	IncFII(S)	100	262 / 262	ABOBSL010000027.1 Salmonella enterica strain PNUSAS392080 SAMN37875547-rid19898553.denovo.27, whole genome shotgun sequence	9331..9592																																																avrA	ABOBSL010000002.1	209723..210592	99.885	870	0						
GCA_032847265.1_PDT001947847.1_genomic.fna	Salmonella_enterica	0.5206	257.839 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(29)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBSK010000002.1 Salmonella enterica strain PNUSAS392068 SAMN37875542-rid19904463.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBSK010000044.1 Salmonella enterica strain PNUSAS392068 SAMN37875542-rid19904463.guided.31, whole genome shotgun sequence	13107..13544	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(29)	99.23	259 / 259	ABOBSK010000021.1 Salmonella enterica strain PNUSAS392068 SAMN37875542-rid19904463.denovo.21, whole genome shotgun sequence	61119..61377																																																						avrA	ABOBSK010000004.1	209325..210193	100	869	0						
GCA_032847285.1_PDT001947846.1_genomic.fna	Salmonella_enterica	0.5211	656.093 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBSN010000001.1 Salmonella enterica strain PNUSAS392081 SAMN37875545-rid19901653.denovo.01, whole genome shotgun sequence	384606..385043	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBSN010000051.1 Salmonella enterica strain PNUSAS392081 SAMN37875545-rid19901653.guided.19, whole genome shotgun sequence	2139..2576	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBSN010000003.1	504324..505194	99.196	871	0						
GCA_032847305.1_PDT001947844.1_genomic.fna	Salmonella_enterica	0.5211	278.672 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	13	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cml,floR,cmlA1,sul2,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBSO010000001.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.01, whole genome shotgun sequence	494091..494528	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOBSO010000034.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.34, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOBSO010000034.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.34, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOBSO010000041.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.45, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBSO010000041.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.45, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOBSO010000065.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.guided.36, whole genome shotgun sequence	12412..12849	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOBSO010000068.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.guided.43, whole genome shotgun sequence	5100..5891	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOBSO010000070.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.guided.52, whole genome shotgun sequence	1261..2052	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOBSO010000074.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.guided.64, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBSO010000074.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.guided.64, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOBSO010000053.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.62, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOBSO010000075.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.guided.65, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOBSO010000034.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.34, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOBSO010000049.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.56, whole genome shotgun sequence	568..1781	Chloramphenicol, Florfenicol	AF118107	cml	96.66	929/909	ABOBSO010000070.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.guided.52, whole genome shotgun sequence	321..1242	Chloramphenicol	M22614	floR	98.11	1214/1215	ABOBSO010000071.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.guided.54, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOBSO010000072.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.guided.59, whole genome shotgun sequence	130..1389	Chloramphenicol	M64556	sul2	100	816/816	ABOBSO010000041.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.45, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOBSO010000076.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.guided.70, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOBSO010000077.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.guided.71, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABOBSO010000078.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.guided.72, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOBSO010000079.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.guided.73, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOBSO010000033.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOBSO010000034.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.34, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOBSO010000067.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.guided.40, whole genome shotgun sequence	9820..11025	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOBSO010000069.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.guided.50, whole genome shotgun sequence	269..2188	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABOBSO010000034.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.34, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABOBSO010000068.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.guided.43, whole genome shotgun sequence	4195..4692	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																								enterobacteriales	Col156	94.81	154 / 154	ABOBSO010000039.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.42, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABOBSO010000046.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.51, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABOBSO010000054.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.63, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOBSO010000032.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.32, whole genome shotgun sequence	17775..18456		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOBSO010000027.1 Salmonella enterica strain PNUSAS392078 SAMN37875539-rid19903623.denovo.27, whole genome shotgun sequence	36697..37193																											avrA	ABOBSO010000002.1	508765..509634	99.885	870	0						
GCA_032847325.1_PDT001947845.1_genomic.fna	Salmonella_enterica	0.5218	490.695 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOBSM010000001.1 Salmonella enterica strain PNUSAS392070 SAMN37875546-rid19906493.denovo.01, whole genome shotgun sequence	510593..511030	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOBSM010000021.1 Salmonella enterica strain PNUSAS392070 SAMN37875546-rid19906493.guided.17, whole genome shotgun sequence	8005..8442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBSM010000003.1	544607..545475	99.425	870	0						
GCA_032847345.1_PDT001947843.1_genomic.fna	Salmonella_enterica	0.5222	397.497 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBSQ010000001.1 Salmonella enterica strain PNUSAS392074 SAMN37875541-rid19899563.denovo.01, whole genome shotgun sequence	454800..455237	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBSQ010000029.1 Salmonella enterica strain PNUSAS392074 SAMN37875541-rid19899563.guided.21, whole genome shotgun sequence	10094..10531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBSQ010000002.1	94005..94874	98.966	870	0						
GCA_032847365.1_PDT001947842.1_genomic.fna	Salmonella_enterica	0.5221	608.178 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	Col(pHAD28),IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOBSR010000001.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.denovo.01, whole genome shotgun sequence	639176..639613	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOBSR010000020.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.denovo.22, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOBSR010000034.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.guided.24, whole genome shotgun sequence	7426..7863	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOBSR010000035.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.guided.29, whole genome shotgun sequence	3131..3910	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOBSR010000020.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.denovo.22, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOBSR010000035.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.guided.29, whole genome shotgun sequence	2135..3001	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOBSR010000022.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.denovo.25, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOBSR010000038.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.guided.34, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	99.8	982/1215	ABOBSR010000016.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.denovo.16, whole genome shotgun sequence	1..982	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOBSR010000037.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.guided.32, whole genome shotgun sequence	794..2007	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOBSR010000020.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.denovo.22, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOBSR010000035.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.guided.29, whole genome shotgun sequence	1219..1875	Ciprofloxacin	AY070235	sul1	100	840/840	ABOBSR010000020.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.denovo.22, whole genome shotgun sequence	5021..5860	Sulfamethoxazole	U12338	sul1	100	840/840	ABOBSR010000039.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.guided.35, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1240/1275	ABOBSR010000020.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.denovo.22, whole genome shotgun sequence	8536..9775	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOBSR010000036.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.guided.30, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOBSR010000020.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.denovo.22, whole genome shotgun sequence	6905..7378	Trimethoprim	X00926	dfrA1	100	474/474	ABOBSR010000036.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.guided.30, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABOBSR010000023.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.denovo.26, whole genome shotgun sequence	1164..1294	enterobacteriales	IncR	100	251 / 251	ABOBSR010000016.1 Salmonella enterica strain PNUSAS392077 SAMN37875538-rid19903613.denovo.16, whole genome shotgun sequence	10611..10861																																																avrA	ABOBSR010000002.1	553352..554221	99.77	870	0						
GCA_032847405.1_PDT001947840.1_genomic.fna	Salmonella_enterica	0.5227	337.654 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBST010000001.1 Salmonella enterica strain PNUSAS391206 SAMN37875506-rid19905523.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOBST010000030.1 Salmonella enterica strain PNUSAS391206 SAMN37875506-rid19905523.guided.18, whole genome shotgun sequence	24687..25124	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBST010000002.1	149828..150697	99.655	870	0						
GCA_032847425.1_PDT001947841.1_genomic.fna	Salmonella_enterica	0.5204	489.864 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBSP010000001.1 Salmonella enterica strain PNUSAS392072 SAMN37875511-rid19901643.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBSP010000024.1 Salmonella enterica strain PNUSAS392072 SAMN37875511-rid19901643.guided.16, whole genome shotgun sequence	4035..4472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBSP010000017.1 Salmonella enterica strain PNUSAS392072 SAMN37875511-rid19901643.denovo.18, whole genome shotgun sequence	6800..7442	enterobacteriales	IncFII(S)	100	262 / 262	ABOBSP010000018.1 Salmonella enterica strain PNUSAS392072 SAMN37875511-rid19901643.denovo.20, whole genome shotgun sequence	3364..3625		enterobacteriales	IncX1	98.93	374 / 374	ABOBSP010000013.1 Salmonella enterica strain PNUSAS392072 SAMN37875511-rid19901643.denovo.13, whole genome shotgun sequence	32011..32384																																									avrA	ABOBSP010000002.1	553690..554559	99.54	870	0						
GCA_032847445.1_PDT001947839.1_genomic.fna	Salmonella_enterica	0.5226	496.717 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBSS010000001.1 Salmonella enterica strain PNUSAS392085 SAMN37875508-rid19901633.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBSS010000024.1 Salmonella enterica strain PNUSAS392085 SAMN37875508-rid19901633.guided.15, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBSS010000002.1	183141..184010	98.966	870	0						
GCA_032847465.1_PDT001947838.1_genomic.fna	Salmonella_enterica	0.5224	576.443 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOBSV010000001.1 Salmonella enterica strain PNUSAS391209 SAMN37875509-rid19898543.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOBSV010000027.1 Salmonella enterica strain PNUSAS391209 SAMN37875509-rid19898543.guided.18, whole genome shotgun sequence	3093..3530	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOBSV010000003.1	401439..402308	99.655	870	0						
GCA_032847485.1_PDT001947836.1_genomic.fna	Salmonella_enterica	0.5222	285.201 KB	7	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOBSW010000001.1 Salmonella enterica strain PNUSAS391202 SAMN37875504-rid19900373.denovo.01, whole genome shotgun sequence	403907..404344	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOBSW010000041.1 Salmonella enterica strain PNUSAS391202 SAMN37875504-rid19900373.guided.28, whole genome shotgun sequence	1500..1937	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOBSW010000030.1 Salmonella enterica strain PNUSAS391202 SAMN37875504-rid19900373.denovo.32, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABOBSW010000031.1 Salmonella enterica strain PNUSAS391202 SAMN37875504-rid19900373.denovo.33, whole genome shotgun sequence	2528..2639																																																avrA	ABOBSW010000004.1	174430..175298	99.425	870	0						
GCA_032847505.1_PDT001947837.1_genomic.fna	Salmonella_enterica	0.5213	382.677 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBSU010000001.1 Salmonella enterica strain PNUSAS392073 SAMN37875512-rid19904453.denovo.01, whole genome shotgun sequence	477889..478326	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBSU010000033.1 Salmonella enterica strain PNUSAS392073 SAMN37875512-rid19904453.guided.20, whole genome shotgun sequence	4064..4501	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBSU010000002.1	145172..146041	99.31	870	0						
GCA_032847525.1_PDT001947835.1_genomic.fna	Salmonella_enterica	0.5208	430.206 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBSX010000001.1 Salmonella enterica strain PNUSAS392076 SAMN37875510-rid19906483.denovo.01, whole genome shotgun sequence	663244..663681	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBSX010000027.1 Salmonella enterica strain PNUSAS392076 SAMN37875510-rid19906483.guided.21, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOBSX010000016.1 Salmonella enterica strain PNUSAS392076 SAMN37875510-rid19906483.denovo.16, whole genome shotgun sequence	2730..3263																																																						avrA	ABOBSX010000010.1	93876..94746	99.196	871	0						
GCA_032847545.1_PDT001947834.1_genomic.fna	Salmonella_enterica	0.5209	278.672 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA1,aadA2,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,floR,sul2,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBSY010000001.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOBSY010000033.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.35, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOBSY010000033.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.35, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOBSY010000041.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.47, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBSY010000041.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.47, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOBSY010000059.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.guided.34, whole genome shotgun sequence	11868..12305	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOBSY010000062.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.guided.42, whole genome shotgun sequence	1510..2301	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOBSY010000063.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.guided.44, whole genome shotgun sequence	5061..5852	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	837/837	ABOBSY010000065.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.guided.57, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBSY010000065.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.guided.57, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOBSY010000048.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.55, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOBSY010000066.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.guided.58, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOBSY010000033.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.35, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOBSY010000044.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.50, whole genome shotgun sequence	1107..2320	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOBSY010000062.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.guided.42, whole genome shotgun sequence	158..1417	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOBSY010000064.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.guided.52, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOBSY010000041.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.47, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOBSY010000067.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.guided.61, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOBSY010000068.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.guided.62, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABOBSY010000069.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.guided.63, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOBSY010000070.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.guided.64, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOBSY010000032.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOBSY010000033.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.35, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOBSY010000060.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.guided.37, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOBSY010000062.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.guided.42, whole genome shotgun sequence	4229..6148	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABOBSY010000033.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.35, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABOBSY010000063.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.guided.44, whole genome shotgun sequence	4156..4653	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																															enterobacteriales	Col156	94.81	154 / 154	ABOBSY010000038.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.43, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABOBSY010000045.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.51, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABOBSY010000049.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.56, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOBSY010000029.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.30, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOBSY010000023.1 Salmonella enterica strain PNUSAS391203 SAMN37875503-rid19901623.denovo.23, whole genome shotgun sequence	55735..56231																											avrA	ABOBSY010000002.1	508765..509634	99.885	870	0						
GCA_032847565.1_PDT001947833.1_genomic.fna	Salmonella_enterica	0.5206	394.335 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBSZ010000001.1 Salmonella enterica strain PNUSAS392084 SAMN37875507-rid19899553.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBSZ010000031.1 Salmonella enterica strain PNUSAS392084 SAMN37875507-rid19899553.guided.19, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOBSZ010000013.1 Salmonella enterica strain PNUSAS392084 SAMN37875507-rid19899553.denovo.13, whole genome shotgun sequence	68607..68748																																																						avrA	ABOBSZ010000002.1	145182..146051	99.31	870	0						
GCA_032847585.1_PDT001947830.1_genomic.fna	Salmonella_enterica	0.5222	388.929 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOBTD010000001.1 Salmonella enterica strain PNUSAS391201 SAMN37875502-rid19900363.denovo.01, whole genome shotgun sequence	693483..693920	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOBTD010000026.1 Salmonella enterica strain PNUSAS391201 SAMN37875502-rid19900363.guided.22, whole genome shotgun sequence	7918..8355	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABOBTD010000015.1 Salmonella enterica strain PNUSAS391201 SAMN37875502-rid19900363.denovo.15, whole genome shotgun sequence	8098..8359																																																						avrA	ABOBTD010000006.1	131955..132824	98.966	870	0						
GCA_032847605.1_PDT001947832.1_genomic.fna	Salmonella_enterica	0.5218	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBTA010000001.1 Salmonella enterica strain PNUSAS392082 SAMN37875501-rid19903603.denovo.01, whole genome shotgun sequence	759419..759856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBTA010000031.1 Salmonella enterica strain PNUSAS392082 SAMN37875501-rid19903603.guided.20, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBTA010000002.1	183153..184022	98.966	870	0						
GCA_032847625.1_PDT001947831.1_genomic.fna	Salmonella_enterica	0.52	477.514 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBTB010000001.1 Salmonella enterica strain PNUSAS392083 SAMN37875500-rid19902303.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBTB010000023.1 Salmonella enterica strain PNUSAS392083 SAMN37875500-rid19902303.guided.12, whole genome shotgun sequence	21840..22277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBTB010000016.1 Salmonella enterica strain PNUSAS392083 SAMN37875500-rid19902303.denovo.19, whole genome shotgun sequence	4981..5623	enterobacteriales	IncFII(S)	100	262 / 262	ABOBTB010000017.1 Salmonella enterica strain PNUSAS392083 SAMN37875500-rid19902303.denovo.20, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.4	374 / 374	ABOBTB010000014.1 Salmonella enterica strain PNUSAS392083 SAMN37875500-rid19902303.denovo.16, whole genome shotgun sequence	10523..10896																																									avrA	ABOBTB010000002.1	553488..554357	99.54	870	0						
GCA_032847645.1_PDT001947829.1_genomic.fna	Salmonella_enterica	0.5204	651.421 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOBTC010000001.1 Salmonella enterica strain PNUSAS391205 SAMN37875505-rid19902293.denovo.01, whole genome shotgun sequence	1070929..1071366	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOBTC010000027.1 Salmonella enterica strain PNUSAS391205 SAMN37875505-rid19902293.guided.19, whole genome shotgun sequence	1344..1781	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBTC010000002.1	556197..557065	99.425	870	0						
GCA_032847855.1_PDT001947812.1_genomic.fna	Salmonella_enterica	0.5199	402.798 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBTO010000001.1 Salmonella enterica strain PNUSAS391768 SAMN37875487-rid19903583.denovo.01, whole genome shotgun sequence	1100258..1100695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBTO010000029.1 Salmonella enterica strain PNUSAS391768 SAMN37875487-rid19903583.guided.20, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOBTO010000014.1 Salmonella enterica strain PNUSAS391768 SAMN37875487-rid19903583.denovo.14, whole genome shotgun sequence	2465..2998	enterobacteriales	IncX1	98.4	374 / 374	ABOBTO010000016.1 Salmonella enterica strain PNUSAS391768 SAMN37875487-rid19903583.denovo.16, whole genome shotgun sequence	6956..7329																																																avrA	ABOBTO010000010.1	150695..151565	99.196	871	0						
GCA_032848015.1_PDT001947796.1_genomic.fna	Salmonella_enterica	0.5204	476.686 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBTV010000001.1 Salmonella enterica strain PNUSAS388820 SAMN37875468-rid19898483.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBTV010000030.1 Salmonella enterica strain PNUSAS388820 SAMN37875468-rid19898483.guided.18, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBTV010000002.1	145182..146051	99.31	870	0						
GCA_032848035.1_PDT001947795.1_genomic.fna	Salmonella_enterica	0.5218	529.063 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOBTW010000001.1 Salmonella enterica strain PNUSAS388815 SAMN37875464-rid19906443.denovo.01, whole genome shotgun sequence	778659..779096	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOBTW010000022.1 Salmonella enterica strain PNUSAS388815 SAMN37875464-rid19906443.guided.16, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOBTW010000015.1 Salmonella enterica strain PNUSAS388815 SAMN37875464-rid19906443.denovo.18, whole genome shotgun sequence	239..369																																																						avrA	ABOBTW010000002.1	560947..561816	99.425	870	0						
GCA_032848055.1_PDT001947794.1_genomic.fna	Salmonella_enterica	0.5233	480.89 KB	4	aroC_13,dnaN_109,hemD_49,hisD_13,purE_220,sucA_13,thrA_4	754	30:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_220	sucA	100	100	sucA_13	thrA	100	100	thrA_4	30	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Urbana		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBUA010000001.1 Salmonella enterica strain PNUSAS388825 SAMN37875466-rid19901563.denovo.01, whole genome shotgun sequence	347087..347524	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBUA010000031.1 Salmonella enterica strain PNUSAS388825 SAMN37875466-rid19901563.guided.26, whole genome shotgun sequence	2238..2675	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBUA010000002.1	95271..96140	99.425	870	0						
GCA_032848075.1_PDT001947793.1_genomic.fna	Salmonella_enterica	0.5212	394.336 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Bron or Agbeni	The predicted serotypes share the same general formula: 13:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBTZ010000001.1 Salmonella enterica strain PNUSAS388823 SAMN37875465-rid19899503.denovo.01, whole genome shotgun sequence	624176..624613	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBTZ010000028.1 Salmonella enterica strain PNUSAS388823 SAMN37875465-rid19899503.guided.18, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBTZ010000002.1	145182..146051	99.31	870	0						
GCA_032848095.1_PDT001947792.1_genomic.fna	Salmonella_enterica	0.5218	551.095 KB	2	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOBUB010000001.1 Salmonella enterica strain PNUSAS388824 SAMN37875463-rid19903563.denovo.01, whole genome shotgun sequence	1337565..1338002	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOBUB010000017.1 Salmonella enterica strain PNUSAS388824 SAMN37875463-rid19903563.guided.14, whole genome shotgun sequence	23975..24412	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBUB010000002.1	150030..150899	99.425	870	0						
GCA_032848425.1_PDT001947798.1_genomic.fna	Salmonella_enterica	0.5195	239.515 KB	5	aroC_815,dnaN_4,hemD_8,hisD_280,purE_2,sucA_785,thrA_322	Unknown	35:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_815	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_280	purE	100	100	purE_2	sucA	100	100	sucA_785	thrA	100	100	thrA_322	35	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Monschaui		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOBUT010000001.1 Salmonella enterica strain PNUSAS387438 SAMN37875467-rid19898493.denovo.01, whole genome shotgun sequence	656847..657284	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOBUT010000048.1 Salmonella enterica strain PNUSAS387438 SAMN37875467-rid19898493.guided.28, whole genome shotgun sequence	16432..16869	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOBUT010000007.1	94573..95442	99.31	870	0						
GCA_032848465.1_PDT001947797.1_genomic.fna	Salmonella_enterica	0.5211	278.669 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBUS010000001.1 Salmonella enterica strain PNUSAS388828 SAMN37875469-rid19904423.denovo.01, whole genome shotgun sequence	471836..472273	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOBUS010000034.1 Salmonella enterica strain PNUSAS388828 SAMN37875469-rid19904423.denovo.39, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBUS010000034.1 Salmonella enterica strain PNUSAS388828 SAMN37875469-rid19904423.denovo.39, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOBUS010000050.1 Salmonella enterica strain PNUSAS388828 SAMN37875469-rid19904423.guided.30, whole genome shotgun sequence	13024..13461	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOBUS010000053.1 Salmonella enterica strain PNUSAS388828 SAMN37875469-rid19904423.guided.38, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOBUS010000053.1 Salmonella enterica strain PNUSAS388828 SAMN37875469-rid19904423.guided.38, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOBUS010000039.1 Salmonella enterica strain PNUSAS388828 SAMN37875469-rid19904423.denovo.45, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOBUS010000054.1 Salmonella enterica strain PNUSAS388828 SAMN37875469-rid19904423.guided.44, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOBUS010000034.1 Salmonella enterica strain PNUSAS388828 SAMN37875469-rid19904423.denovo.39, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOBUS010000053.1 Salmonella enterica strain PNUSAS388828 SAMN37875469-rid19904423.guided.38, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOBUS010000030.1 Salmonella enterica strain PNUSAS388828 SAMN37875469-rid19904423.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOBUS010000051.1 Salmonella enterica strain PNUSAS388828 SAMN37875469-rid19904423.guided.32, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABOBUS010000002.1	540454..541323	99.885	870	0						
GCA_032849825.1_PDT001947594.1_genomic.fna	Salmonella_enterica	0.5212	191.427 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBXF010000005.1 Salmonella enterica strain PNUSAS393151 SAMN37875236-rid19899263.denovo.05, whole genome shotgun sequence	145371..145808	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBXF010000048.1 Salmonella enterica strain PNUSAS393151 SAMN37875236-rid19899263.guided.34, whole genome shotgun sequence	660..1097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOBXF010000003.1	184044..184912	99.77	870	0						
GCA_032849885.1_PDT001947590.1_genomic.fna	Salmonella_enterica	0.5213	394.933 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOBXJ010000001.1 Salmonella enterica strain PNUSAS393149 SAMN37875227-rid19902143.denovo.01, whole genome shotgun sequence	594116..594553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOBXJ010000024.1 Salmonella enterica strain PNUSAS393149 SAMN37875227-rid19902143.guided.18, whole genome shotgun sequence	5660..6097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBXJ010000002.1	544300..545168	99.425	870	0						
GCA_032849905.1_PDT001947591.1_genomic.fna	Salmonella_enterica	0.5217	762.478 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOBXI010000001.1 Salmonella enterica strain PNUSAS393153 SAMN37875221-rid19905283.denovo.01, whole genome shotgun sequence	640161..640598	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOBXI010000024.1 Salmonella enterica strain PNUSAS393153 SAMN37875221-rid19905283.guided.17, whole genome shotgun sequence	18102..18539	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBXI010000012.1 Salmonella enterica strain PNUSAS393153 SAMN37875221-rid19905283.denovo.12, whole genome shotgun sequence	72932..73073																																																						avrA	ABOBXI010000004.1	401494..402365	99.541	872	0						
GCA_032849925.1_PDT001947592.1_genomic.fna	Salmonella_enterica	0.5214	478.495 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBXH010000001.1 Salmonella enterica strain PNUSAS393152 SAMN37875235-rid19902153.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBXH010000029.1 Salmonella enterica strain PNUSAS393152 SAMN37875235-rid19902153.guided.20, whole genome shotgun sequence	872..1309	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBXH010000016.1 Salmonella enterica strain PNUSAS393152 SAMN37875235-rid19902153.denovo.16, whole genome shotgun sequence	46030..46672	enterobacteriales	IncFII(S)	100	262 / 262	ABOBXH010000016.1 Salmonella enterica strain PNUSAS393152 SAMN37875235-rid19902153.denovo.16, whole genome shotgun sequence	1777..2038																																																avrA	ABOBXH010000002.1	553076..553945	99.54	870	0						
GCA_032849945.1_PDT001947589.1_genomic.fna	Salmonella_enterica	0.5214	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	3	Col(pHAD28),Col156,IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBXK010000001.1 Salmonella enterica strain PNUSAS393139 SAMN37875230-rid19898243.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBXK010000037.1 Salmonella enterica strain PNUSAS393139 SAMN37875230-rid19898243.guided.20, whole genome shotgun sequence	14400..14837	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOBXK010000012.1 Salmonella enterica strain PNUSAS393139 SAMN37875230-rid19898243.denovo.12, whole genome shotgun sequence	68637..69842	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOBXK010000035.1 Salmonella enterica strain PNUSAS393139 SAMN37875230-rid19898243.guided.17, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOBXK010000025.1 Salmonella enterica strain PNUSAS393139 SAMN37875230-rid19898243.denovo.29, whole genome shotgun sequence	547..675	enterobacteriales	Col156	98.03	152 / 154	ABOBXK010000018.1 Salmonella enterica strain PNUSAS393139 SAMN37875230-rid19898243.denovo.22, whole genome shotgun sequence	3280..3431		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBXK010000012.1 Salmonella enterica strain PNUSAS393139 SAMN37875230-rid19898243.denovo.12, whole genome shotgun sequence	76228..76369		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBXK010000035.1 Salmonella enterica strain PNUSAS393139 SAMN37875230-rid19898243.guided.17, whole genome shotgun sequence	3169..3310																																		avrA	ABOBXK010000002.1	28833..29702	98.966	870	0						
GCA_032849965.1_PDT001947593.1_genomic.fna	Salmonella_enterica	0.5213	421.407 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBXG010000001.1 Salmonella enterica strain PNUSAS393138 SAMN37875237-rid19903223.denovo.01, whole genome shotgun sequence	293253..293690	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBXG010000027.1 Salmonella enterica strain PNUSAS393138 SAMN37875237-rid19903223.guided.21, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBXG010000016.1 Salmonella enterica strain PNUSAS393138 SAMN37875237-rid19903223.denovo.16, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABOBXG010000016.1 Salmonella enterica strain PNUSAS393138 SAMN37875237-rid19903223.denovo.16, whole genome shotgun sequence	4078..4339																																																avrA	ABOBXG010000002.1	552782..553651	99.54	870	0						
GCA_032850065.1_PDT001947587.1_genomic.fna	Salmonella_enterica	0.5212	455.615 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBXO010000005.1 Salmonella enterica strain PNUSAS393144 SAMN37875224-rid19901243.denovo.05, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBXO010000028.1 Salmonella enterica strain PNUSAS393144 SAMN37875224-rid19901243.guided.20, whole genome shotgun sequence	15555..15992	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBXO010000016.1 Salmonella enterica strain PNUSAS393144 SAMN37875224-rid19901243.denovo.16, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOBXO010000016.1 Salmonella enterica strain PNUSAS393144 SAMN37875224-rid19901243.denovo.16, whole genome shotgun sequence	4416..4677																																																avrA	ABOBXO010000001.1	585031..585900	99.54	870	0						
GCA_032850085.1_PDT001947586.1_genomic.fna	Salmonella_enterica	0.5211	366.652 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBXR010000001.1 Salmonella enterica strain PNUSAS393150 SAMN37875226-rid19906183.denovo.01, whole genome shotgun sequence	477372..477809	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBXR010000040.1 Salmonella enterica strain PNUSAS393150 SAMN37875226-rid19906183.guided.30, whole genome shotgun sequence	2956..3393	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBXR010000011.1	94855..95724	99.195	870	0						
GCA_032850105.1_PDT001947584.1_genomic.fna	Salmonella_enterica	0.5214	469.839 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBXQ010000001.1 Salmonella enterica strain PNUSAS393142 SAMN37875229-rid19899253.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBXQ010000028.1 Salmonella enterica strain PNUSAS393142 SAMN37875229-rid19899253.guided.21, whole genome shotgun sequence	1962..2399	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBXQ010000016.1 Salmonella enterica strain PNUSAS393142 SAMN37875229-rid19899253.denovo.16, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABOBXQ010000016.1 Salmonella enterica strain PNUSAS393142 SAMN37875229-rid19899253.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABOBXQ010000013.1	28834..29703	99.54	870	0						
GCA_032850125.1_PDT001947588.1_genomic.fna	Salmonella_enterica	0.5207	425.95 KB	5	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOBXP010000001.1 Salmonella enterica strain PNUSAS393140 SAMN37875232-rid19904263.denovo.01, whole genome shotgun sequence	730839..731276	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOBXP010000027.1 Salmonella enterica strain PNUSAS393140 SAMN37875232-rid19904263.guided.23, whole genome shotgun sequence	4769..5206	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOBXP010000017.1 Salmonella enterica strain PNUSAS393140 SAMN37875232-rid19904263.denovo.17, whole genome shotgun sequence	5891..6424																																																						avrA	ABOBXP010000002.1	149711..150580	99.425	870	0						
GCA_032850145.1_PDT001947585.1_genomic.fna	Salmonella_enterica	0.5215	192.079 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBXS010000001.1 Salmonella enterica strain PNUSAS393146 SAMN37875222-rid19901233.denovo.01, whole genome shotgun sequence	96247..96684	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBXS010000052.1 Salmonella enterica strain PNUSAS393146 SAMN37875222-rid19901233.guided.41, whole genome shotgun sequence	2959..3396	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBXS010000018.1 Salmonella enterica strain PNUSAS393146 SAMN37875222-rid19901233.denovo.18, whole genome shotgun sequence	44623..45265	enterobacteriales	IncFII(S)	100	262 / 262	ABOBXS010000018.1 Salmonella enterica strain PNUSAS393146 SAMN37875222-rid19901233.denovo.18, whole genome shotgun sequence	60350..60611																																																avrA	ABOBXS010000002.1	146500..147369	99.885	870	0						
GCA_032850165.1_PDT001947581.1_genomic.fna	Salmonella_enterica	0.5197	420.156 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBXV010000001.1 Salmonella enterica strain PNUSAS393147 SAMN37875225-rid19905273.denovo.01, whole genome shotgun sequence	477381..477818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBXV010000030.1 Salmonella enterica strain PNUSAS393147 SAMN37875225-rid19905273.guided.26, whole genome shotgun sequence	4957..5394	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOBXV010000019.1 Salmonella enterica strain PNUSAS393147 SAMN37875225-rid19905273.denovo.20, whole genome shotgun sequence	10892..11425	enterobacteriales	IncX1	98.4	374 / 374	ABOBXV010000022.1 Salmonella enterica strain PNUSAS393147 SAMN37875225-rid19905273.denovo.23, whole genome shotgun sequence	34793..35166																																																avrA	ABOBXV010000018.1	39348..40218	99.196	871	0						
GCA_032850185.1_PDT001947583.1_genomic.fna	Salmonella_enterica	0.5227	421.303 KB	5	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBXT010000003.1 Salmonella enterica strain PNUSAS393143 SAMN37875228-rid19903213.denovo.03, whole genome shotgun sequence	452452..452889	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBXT010000034.1 Salmonella enterica strain PNUSAS393143 SAMN37875228-rid19903213.guided.19, whole genome shotgun sequence	1603..2040	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	ABOBXT010000025.1 Salmonella enterica strain PNUSAS393143 SAMN37875228-rid19903213.denovo.28, whole genome shotgun sequence	3345..3457																																																						avrA	ABOBXT010000004.1	78529..79398	99.425	870	0						
GCA_032850205.1_PDT001947582.1_genomic.fna	Salmonella_enterica	0.5214	421.397 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	10	aac(6')-Iaa,aadA2b,ant(2'')-Ia,aac(6')-Iaa,aadA2b,ant(2'')-Ia,blaCARB-2,blaFOX-5,blaCARB-2,blaFOX-5,blaFOX-5,cmlA1,catB3,cmlA1,catB3,qnrA1,qnrA1,sul1,sul1,sul1,sul1,sul1,sul1,dfrA19,dfrA19	0		3	IncC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBXU010000004.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.denovo.04, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOBXU010000029.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.denovo.33, whole genome shotgun sequence	1061..1840	Spectinomycin, Streptomycin	D43625	ant(2'')-Ia	100	534/534	ABOBXU010000043.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.denovo.52, whole genome shotgun sequence	5..538	Gentamicin, Tobramycin	X04555	aac(6')-Iaa	96.35	438/438	ABOBXU010000053.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.guided.26, whole genome shotgun sequence	7941..8378	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOBXU010000056.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.guided.32, whole genome shotgun sequence	1102..1881	Spectinomycin, Streptomycin	D43625	ant(2'')-Ia	100	534/534	ABOBXU010000061.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.guided.48, whole genome shotgun sequence	46..579	Gentamicin, Tobramycin	X04555	blaCARB-2	100	867/867	ABOBXU010000029.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.denovo.33, whole genome shotgun sequence	65..931	Ampicillin, Amoxicillin, Piperacillin	M69058	blaFOX-5	100	1149/1149	ABOBXU010000031.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.denovo.37, whole genome shotgun sequence	51..1199	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	AY007369	blaCARB-2	100	867/867	ABOBXU010000056.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.guided.32, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	blaFOX-5	100	1149/1149	ABOBXU010000057.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.guided.35, whole genome shotgun sequence	92..1240	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	AY007369	blaFOX-5	99.91	1149/1149	ABOBXU010000058.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.guided.36, whole genome shotgun sequence	92..1240	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	AY007369	cmlA1	99.84	1260/1260	ABOBXU010000029.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.denovo.33, whole genome shotgun sequence	2102..3361	Chloramphenicol	M64556	catB3	100	633/633	ABOBXU010000043.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.denovo.52, whole genome shotgun sequence	621..1253	Chloramphenicol	U13880	cmlA1	99.84	1260/1260	ABOBXU010000056.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.guided.32, whole genome shotgun sequence	2143..3402	Chloramphenicol	M64556	catB3	100	633/633	ABOBXU010000061.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.guided.48, whole genome shotgun sequence	662..1294	Chloramphenicol	U13880	qnrA1	100	656/657	ABOBXU010000050.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.denovo.63, whole genome shotgun sequence	1..656	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOBXU010000065.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.guided.61, whole genome shotgun sequence	141..797	Ciprofloxacin	AY070235	sul1	100	840/840	ABOBXU010000035.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.denovo.41, whole genome shotgun sequence	179..1018	Sulfamethoxazole	U12338	sul1	100	774/828	ABOBXU010000062.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.guided.54, whole genome shotgun sequence	454..1227	Sulfamethoxazole	AY522923	sul1	100	774/882	ABOBXU010000062.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.guided.54, whole genome shotgun sequence	454..1227	Sulfamethoxazole	DQ914960	sul1	100	774/840	ABOBXU010000062.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.guided.54, whole genome shotgun sequence	454..1227	Sulfamethoxazole	U12338	sul1	100	840/840	ABOBXU010000063.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.guided.55, whole genome shotgun sequence	200..1039	Sulfamethoxazole	X15024	sul1	100	840/840	ABOBXU010000064.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.guided.56, whole genome shotgun sequence	200..1039	Sulfamethoxazole	U12338	dfrA19	100	570/570	ABOBXU010000038.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.denovo.46, whole genome shotgun sequence	533..1102	Trimethoprim	EU855687	dfrA19	100	570/570	ABOBXU010000060.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.guided.45, whole genome shotgun sequence	574..1143	Trimethoprim	EU855687																																																																																																																																																																																																																																																																																																													enterobacteriales	IncC	100	417 / 417	ABOBXU010000022.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.denovo.22, whole genome shotgun sequence	22470..22886	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBXU010000021.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.denovo.21, whole genome shotgun sequence	49240..49882		enterobacteriales	IncFII(S)	100	262 / 262	ABOBXU010000021.1 Salmonella enterica strain PNUSAS393145 SAMN37875223-rid19902133.denovo.21, whole genome shotgun sequence	4987..5248																																									avrA	ABOBXU010000001.1	585071..585940	99.54	870	0						
GCA_032850225.1_PDT001947579.1_genomic.fna	Salmonella_enterica	0.5206	469.979 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBXZ010000001.1 Salmonella enterica strain PNUSAS393148 SAMN37875220-rid19898233.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBXZ010000030.1 Salmonella enterica strain PNUSAS393148 SAMN37875220-rid19898233.guided.20, whole genome shotgun sequence	9512..9949	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBXZ010000015.1 Salmonella enterica strain PNUSAS393148 SAMN37875220-rid19898233.denovo.15, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOBXZ010000015.1 Salmonella enterica strain PNUSAS393148 SAMN37875220-rid19898233.denovo.15, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABOBXZ010000016.1 Salmonella enterica strain PNUSAS393148 SAMN37875220-rid19898233.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABOBXZ010000012.1	28833..29702	99.54	870	0						
GCA_032850245.1_PDT001947580.1_genomic.fna	Salmonella_enterica	0.5218	207.445 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBXY010000002.1 Salmonella enterica strain PNUSAS393141 SAMN37875231-rid19902123.denovo.02, whole genome shotgun sequence	145248..145685	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBXY010000049.1 Salmonella enterica strain PNUSAS393141 SAMN37875231-rid19902123.guided.35, whole genome shotgun sequence	1833..2270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOBXY010000004.1	174490..175358	99.77	870	0						
GCA_032850265.1_PDT001947578.1_genomic.fna	Salmonella_enterica	0.5201	488.255 KB	5	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),Col440I,Col440I,IncFII(p96A),IncX4	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOBXX010000005.1 Salmonella enterica strain PNUSAS393094 SAMN37875204-rid19905263.denovo.05, whole genome shotgun sequence	20566..21003	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOBXX010000036.1 Salmonella enterica strain PNUSAS393094 SAMN37875204-rid19905263.guided.29, whole genome shotgun sequence	2213..2650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOBXX010000024.1 Salmonella enterica strain PNUSAS393094 SAMN37875204-rid19905263.denovo.26, whole genome shotgun sequence	2209..2339	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOBXX010000026.1 Salmonella enterica strain PNUSAS393094 SAMN37875204-rid19905263.denovo.28, whole genome shotgun sequence	557..687		enterobacteriales	Col440I	94.59	111 / 114	ABOBXX010000023.1 Salmonella enterica strain PNUSAS393094 SAMN37875204-rid19905263.denovo.25, whole genome shotgun sequence	3175..3285		enterobacteriales	Col440I	93.64	110 / 114	ABOBXX010000029.1 Salmonella enterica strain PNUSAS393094 SAMN37875204-rid19905263.denovo.32, whole genome shotgun sequence	1568..1677		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOBXX010000017.1 Salmonella enterica strain PNUSAS393094 SAMN37875204-rid19905263.denovo.17, whole genome shotgun sequence	15755..16288		enterobacteriales	IncX4	100	374 / 374	ABOBXX010000019.1 Salmonella enterica strain PNUSAS393094 SAMN37875204-rid19905263.denovo.19, whole genome shotgun sequence	3072..3445																				avrA	ABOBXX010000001.1	545585..546453	99.655	869	0						
GCA_032850285.1_PDT001947577.1_genomic.fna	Salmonella_enterica	0.5213	429.177 KB	5	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	5	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,fosA7,fosA7,sul1,sul1	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOBYA010000002.1 Salmonella enterica strain PNUSAS393097 SAMN37875188-rid19901223.denovo.02, whole genome shotgun sequence	154592..155029	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOBYA010000015.1 Salmonella enterica strain PNUSAS393097 SAMN37875188-rid19901223.denovo.15, whole genome shotgun sequence	71474..72265	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOBYA010000015.1 Salmonella enterica strain PNUSAS393097 SAMN37875188-rid19901223.denovo.15, whole genome shotgun sequence	71474..72265	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOBYA010000035.1 Salmonella enterica strain PNUSAS393097 SAMN37875188-rid19901223.guided.24, whole genome shotgun sequence	5868..6659	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOBYA010000035.1 Salmonella enterica strain PNUSAS393097 SAMN37875188-rid19901223.guided.24, whole genome shotgun sequence	5868..6659	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOBYA010000036.1 Salmonella enterica strain PNUSAS393097 SAMN37875188-rid19901223.guided.25, whole genome shotgun sequence	5868..6659	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOBYA010000036.1 Salmonella enterica strain PNUSAS393097 SAMN37875188-rid19901223.guided.25, whole genome shotgun sequence	5868..6659	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.26	438/438	ABOBYA010000038.1 Salmonella enterica strain PNUSAS393097 SAMN37875188-rid19901223.guided.29, whole genome shotgun sequence	1768..2205	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOBYA010000021.1 Salmonella enterica strain PNUSAS393097 SAMN37875188-rid19901223.denovo.22, whole genome shotgun sequence	6434..7294	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOBYA010000039.1 Salmonella enterica strain PNUSAS393097 SAMN37875188-rid19901223.guided.30, whole genome shotgun sequence	2122..2982	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	fosA7	100	423/423	ABOBYA010000001.1 Salmonella enterica strain PNUSAS393097 SAMN37875188-rid19901223.denovo.01, whole genome shotgun sequence	274352..274774	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABOBYA010000034.1 Salmonella enterica strain PNUSAS393097 SAMN37875188-rid19901223.guided.23, whole genome shotgun sequence	5221..5643	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABOBYA010000015.1 Salmonella enterica strain PNUSAS393097 SAMN37875188-rid19901223.denovo.15, whole genome shotgun sequence	72770..73609	Sulfamethoxazole	U12338	sul1	100	840/840	ABOBYA010000037.1 Salmonella enterica strain PNUSAS393097 SAMN37875188-rid19901223.guided.27, whole genome shotgun sequence	42..881	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.04	113 / 131	ABOBYA010000021.1 Salmonella enterica strain PNUSAS393097 SAMN37875188-rid19901223.denovo.22, whole genome shotgun sequence	1410..1522	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBYA010000015.1 Salmonella enterica strain PNUSAS393097 SAMN37875188-rid19901223.denovo.15, whole genome shotgun sequence	83131..83272																																																avrA	ABOBYA010000011.1	94137..95006	99.54	870	0						
GCA_032850325.1_PDT001947575.1_genomic.fna	Salmonella_enterica	0.521	299.41 KB	6	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBYB010000001.1 Salmonella enterica strain PNUSAS393083 SAMN37875193-rid19901213.denovo.01, whole genome shotgun sequence	482600..483037	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBYB010000048.1 Salmonella enterica strain PNUSAS393083 SAMN37875193-rid19901213.guided.42, whole genome shotgun sequence	958..1395	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBYB010000026.1 Salmonella enterica strain PNUSAS393083 SAMN37875193-rid19901213.denovo.26, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABOBYB010000026.1 Salmonella enterica strain PNUSAS393083 SAMN37875193-rid19901213.denovo.26, whole genome shotgun sequence	9325..9586																																																avrA	ABOBYB010000004.1	174642..175511	99.885	870	0						
GCA_032850345.1_PDT001947024.1_genomic.fna	Salmonella_enterica	0.5211	440.903 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBYF010000001.1 Salmonella enterica strain PNUSAS393089 SAMN37875176-rid19897483.denovo.01, whole genome shotgun sequence	519704..520141	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBYF010000030.1 Salmonella enterica strain PNUSAS393089 SAMN37875176-rid19897483.guided.16, whole genome shotgun sequence	32692..33129	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOBYF010000012.1 Salmonella enterica strain PNUSAS393089 SAMN37875176-rid19897483.denovo.12, whole genome shotgun sequence	70159..70300																																																						avrA	ABOBYF010000002.1	503546..504415	99.195	870	0						
GCA_032850365.1_PDT001947025.1_genomic.fna	Salmonella_enterica	0.5209	380.103 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBYC010000001.1 Salmonella enterica strain PNUSAS393078 SAMN37875190-rid19903773.denovo.01, whole genome shotgun sequence	482082..482519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOBYC010000016.1 Salmonella enterica strain PNUSAS393078 SAMN37875190-rid19903773.denovo.16, whole genome shotgun sequence	6538..7071																																																						avrA	ABOBYC010000001.1	917985..918854	99.77	870	0						
GCA_032850385.1_PDT001947023.1_genomic.fna	Salmonella_enterica	0.5202	444.961 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOBYE010000001.1 Salmonella enterica strain PNUSAS393084 SAMN37875191-rid19905603.denovo.01, whole genome shotgun sequence	474446..474883	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOBYE010000025.1 Salmonella enterica strain PNUSAS393084 SAMN37875191-rid19905603.guided.23, whole genome shotgun sequence	911..1348	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBYE010000004.1	406409..407277	99.425	870	0						
GCA_032850405.1_PDT001947022.1_genomic.fna	Salmonella_enterica	0.5185	257.298 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	20	aac(6')-Iaa,aac(3)-IId,aadA22,aph(3')-Ia,aac(6')-Iaa,aac(3)-IId,aadA22,aph(3')-Ia,blaCTX-M-55,blaLAP-2,blaTEM-216,blaTEM-214,blaTEM-209,blaTEM-206,blaTEM-141,blaTEM-1B,blaLAP-2,blaTEM-216,blaTEM-214,blaTEM-209,blaTEM-206,blaTEM-141,blaTEM-1B,blaCTX-M-55,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrS1,ARR-2,ARR-2,sul3,sul3,tet(B),tet(B),dfrA14,dfrA14	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBYG010000001.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.01, whole genome shotgun sequence	458966..459403	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABOBYG010000048.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.54, whole genome shotgun sequence	263..1123	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABOBYG010000053.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.61, whole genome shotgun sequence	946..1737	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABOBYG010000062.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.76, whole genome shotgun sequence	239..1054	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EF015636	aac(6')-Iaa	100	438/438	ABOBYG010000078.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.44, whole genome shotgun sequence	4608..5045	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABOBYG010000085.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.65, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABOBYG010000086.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.68, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABOBYG010000089.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.74, whole genome shotgun sequence	163..978	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EF015636	blaCTX-M-55	100	876/876	ABOBYG010000037.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.39, whole genome shotgun sequence	2969..3844	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABOBYG010000044.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.47, whole genome shotgun sequence	2921..3778	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-216	100	717/861	ABOBYG010000044.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.47, whole genome shotgun sequence	1..717	Unknown Beta-lactam	KF944358	blaTEM-214	100	717/861	ABOBYG010000044.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.47, whole genome shotgun sequence	1..717	Unknown Beta-lactam	KP050491	blaTEM-209	100	717/861	ABOBYG010000044.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.47, whole genome shotgun sequence	1..717	Unknown Beta-lactam	KF240808	blaTEM-206	100	717/861	ABOBYG010000044.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.47, whole genome shotgun sequence	1..717	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	100	717/861	ABOBYG010000044.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.47, whole genome shotgun sequence	1..717	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	100	717/861	ABOBYG010000044.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.47, whole genome shotgun sequence	1..717	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABOBYG010000081.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.53, whole genome shotgun sequence	2962..3819	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-216	100	719/861	ABOBYG010000081.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.53, whole genome shotgun sequence	40..758	Unknown Beta-lactam	KF944358	blaTEM-214	100	719/861	ABOBYG010000081.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.53, whole genome shotgun sequence	40..758	Unknown Beta-lactam	KP050491	blaTEM-209	100	719/861	ABOBYG010000081.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.53, whole genome shotgun sequence	40..758	Unknown Beta-lactam	KF240808	blaTEM-206	100	719/861	ABOBYG010000081.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.53, whole genome shotgun sequence	40..758	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	100	719/861	ABOBYG010000081.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.53, whole genome shotgun sequence	40..758	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	100	719/861	ABOBYG010000081.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.53, whole genome shotgun sequence	40..758	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABOBYG010000084.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.64, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	mph(A)	100	906/906	ABOBYG010000049.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.56, whole genome shotgun sequence	2576..3481	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABOBYG010000053.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.61, whole genome shotgun sequence	1869..2690	Lincomycin	EU118119	mph(A)	100	906/906	ABOBYG010000082.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.55, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABOBYG010000086.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.68, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	floR	98.11	1214/1215	ABOBYG010000040.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.42, whole genome shotgun sequence	708..1921	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABOBYG010000080.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.52, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABOBYG010000045.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.48, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOBYG010000087.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.69, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABOBYG010000057.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.67, whole genome shotgun sequence	612..1064	Rifampicin	HQ141279	ARR-2	100	453/453	ABOBYG010000088.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.70, whole genome shotgun sequence	641..1093	Rifampicin	HQ141279	sul3	100	792/792	ABOBYG010000051.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.59, whole genome shotgun sequence	166..957	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOBYG010000083.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.58, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABOBYG010000036.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.38, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOBYG010000079.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.50, whole genome shotgun sequence	2558..3763	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABOBYG010000057.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.67, whole genome shotgun sequence	1175..1648	Trimethoprim	KF921535	dfrA14	100	474/474	ABOBYG010000088.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.guided.70, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABOBYG010000047.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.51, whole genome shotgun sequence	1939..2067	enterobacteriales	IncHI2	100	327 / 327	ABOBYG010000030.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.30, whole genome shotgun sequence	3960..4286		enterobacteriales	IncHI2A	99.52	630 / 630	ABOBYG010000030.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.30, whole genome shotgun sequence	22270..22899		enterobacteriales	IncN	100	512 / 514	ABOBYG010000065.1 Salmonella enterica strain PNUSAS393079 SAMN37875179-rid19900493.denovo.79, whole genome shotgun sequence	470..981																																		avrA	ABOBYG010000002.1	540735..541604	99.885	870	0						
GCA_032850425.1_PDT001947021.1_genomic.fna	Salmonella_enterica	0.5211	405.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBYD010000001.1 Salmonella enterica strain PNUSAS393080 SAMN37875181-rid19905593.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBYD010000026.1 Salmonella enterica strain PNUSAS393080 SAMN37875181-rid19905593.guided.14, whole genome shotgun sequence	7796..8233	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBYD010000017.1 Salmonella enterica strain PNUSAS393080 SAMN37875181-rid19905593.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOBYD010000018.1 Salmonella enterica strain PNUSAS393080 SAMN37875181-rid19905593.denovo.20, whole genome shotgun sequence	3392..3653																																																avrA	ABOBYD010000002.1	553625..554494	99.54	870	0						
GCA_032850445.1_PDT001947017.1_genomic.fna	Salmonella_enterica	0.5214	332.24 KB	6	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBYJ010000001.1 Salmonella enterica strain PNUSAS393086 SAMN37875202-rid19899643.denovo.01, whole genome shotgun sequence	458989..459426	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBYJ010000045.1 Salmonella enterica strain PNUSAS393086 SAMN37875202-rid19899643.guided.34, whole genome shotgun sequence	651..1088	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBYJ010000023.1 Salmonella enterica strain PNUSAS393086 SAMN37875202-rid19899643.denovo.23, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABOBYJ010000023.1 Salmonella enterica strain PNUSAS393086 SAMN37875202-rid19899643.denovo.23, whole genome shotgun sequence	9325..9586																																																avrA	ABOBYJ010000005.1	174642..175511	99.885	870	0						
GCA_032850465.1_PDT001947019.1_genomic.fna	Salmonella_enterica	0.5212	394.336 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBYI010000001.1 Salmonella enterica strain PNUSAS393082 SAMN37875192-rid19897413.denovo.01, whole genome shotgun sequence	477885..478322	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBYI010000034.1 Salmonella enterica strain PNUSAS393082 SAMN37875192-rid19897413.guided.19, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBYI010000002.1	145182..146051	99.31	870	0						
GCA_032850485.1_PDT001947020.1_genomic.fna	Salmonella_enterica	0.5213	232.069 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBYH010000004.1 Salmonella enterica strain PNUSAS393092 SAMN37875180-rid19903763.denovo.04, whole genome shotgun sequence	136826..137263	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBYH010000039.1 Salmonella enterica strain PNUSAS393092 SAMN37875180-rid19903763.guided.36, whole genome shotgun sequence	684..1121	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBYH010000027.1 Salmonella enterica strain PNUSAS393092 SAMN37875180-rid19903763.denovo.27, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOBYH010000028.1 Salmonella enterica strain PNUSAS393092 SAMN37875180-rid19903763.denovo.29, whole genome shotgun sequence	3416..3677																																																avrA	ABOBYH010000001.1	552771..553640	99.54	870	0						
GCA_032850505.1_PDT001947016.1_genomic.fna	Salmonella_enterica	0.5213	394.336 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBYK010000001.1 Salmonella enterica strain PNUSAS393087 SAMN37875203-rid19904543.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBYK010000030.1 Salmonella enterica strain PNUSAS393087 SAMN37875203-rid19904543.guided.16, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBYK010000002.1	144915..145784	99.31	870	0						
GCA_032850565.1_PDT001947013.1_genomic.fna	Salmonella_enterica	0.5216	190.064 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBYO010000001.1 Salmonella enterica strain PNUSAS393081 SAMN37875187-rid19902413.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBYO010000052.1 Salmonella enterica strain PNUSAS393081 SAMN37875187-rid19902413.guided.41, whole genome shotgun sequence	385..822	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBYO010000027.1 Salmonella enterica strain PNUSAS393081 SAMN37875187-rid19902413.denovo.27, whole genome shotgun sequence	44729..45371	enterobacteriales	IncFII(S)	100	262 / 262	ABOBYO010000027.1 Salmonella enterica strain PNUSAS393081 SAMN37875187-rid19902413.denovo.27, whole genome shotgun sequence	29383..29644		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBYO010000023.1 Salmonella enterica strain PNUSAS393081 SAMN37875187-rid19902413.denovo.23, whole genome shotgun sequence	69113..69254																																									avrA	ABOBYO010000004.1	209400..210268	100	869	0						
GCA_032850585.1_PDT001947012.1_genomic.fna	Salmonella_enterica	0.5222	354.844 KB	3	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_746	3848	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_746	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOBYP010000001.1 Salmonella enterica strain PNUSAS393090 SAMN37875186-rid19900483.denovo.01, whole genome shotgun sequence	755810..756247	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOBYP010000027.1 Salmonella enterica strain PNUSAS393090 SAMN37875186-rid19900483.guided.22, whole genome shotgun sequence	1316..1753	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOBYP010000014.1 Salmonella enterica strain PNUSAS393090 SAMN37875186-rid19900483.denovo.14, whole genome shotgun sequence	6323..6856																																																						avrA	ABOBYP010000006.1	94167..95036	99.54	870	0						
GCA_032850605.1_PDT001947011.1_genomic.fna	Salmonella_enterica	0.5203	480.388 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOBYN010000001.1 Salmonella enterica strain PNUSAS393098 SAMN37875200-rid19899633.denovo.01, whole genome shotgun sequence	1027475..1027912	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOBYN010000021.1 Salmonella enterica strain PNUSAS393098 SAMN37875200-rid19899633.guided.17, whole genome shotgun sequence	3949..4386	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBYN010000002.1	509973..510841	99.425	870	0						
GCA_032850645.1_PDT001947009.1_genomic.fna	Salmonella_enterica	0.5221	178.229 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBYR010000003.1 Salmonella enterica strain PNUSAS393121 SAMN37875174-rid19897473.denovo.03, whole genome shotgun sequence	68383..68820	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBYR010000058.1 Salmonella enterica strain PNUSAS393121 SAMN37875174-rid19897473.guided.39, whole genome shotgun sequence	6313..6750	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBYR010000019.1 Salmonella enterica strain PNUSAS393121 SAMN37875174-rid19897473.denovo.19, whole genome shotgun sequence	14681..15323	enterobacteriales	IncFII(S)	100	262 / 262	ABOBYR010000019.1 Salmonella enterica strain PNUSAS393121 SAMN37875174-rid19897473.denovo.19, whole genome shotgun sequence	30408..30669																																																avrA	ABOBYR010000016.1	39348..40216	100	869	0						
GCA_032850665.1_PDT001947008.1_genomic.fna	Salmonella_enterica	0.5212	275.208 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBYS010000001.1 Salmonella enterica strain PNUSAS393099 SAMN37875201-rid19902393.denovo.01, whole genome shotgun sequence	381663..382100	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBYS010000050.1 Salmonella enterica strain PNUSAS393099 SAMN37875201-rid19902393.guided.37, whole genome shotgun sequence	3921..4358	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOBYS010000005.1	97953..98821	99.77	870	0						
GCA_032850685.1_PDT001947007.1_genomic.fna	Salmonella_enterica	0.5213	394.901 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBYT010000001.1 Salmonella enterica strain PNUSAS393088 SAMN37875182-rid19899623.denovo.01, whole genome shotgun sequence	477889..478326	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBYT010000033.1 Salmonella enterica strain PNUSAS393088 SAMN37875182-rid19899623.guided.19, whole genome shotgun sequence	9166..9603	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBYT010000002.1	145179..146048	99.31	870	0						
GCA_032850705.1_PDT001947006.1_genomic.fna	Salmonella_enterica	0.522	341.897 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOBYY010000003.1 Salmonella enterica strain PNUSAS393100 SAMN37875178-rid19904533.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOBYY010000046.1 Salmonella enterica strain PNUSAS393100 SAMN37875178-rid19904533.guided.33, whole genome shotgun sequence	7127..7564	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABOBYY010000034.1 Salmonella enterica strain PNUSAS393100 SAMN37875178-rid19904533.denovo.37, whole genome shotgun sequence	4021..4151	enterobacteriales	IncFIB(S)	100	643 / 643	ABOBYY010000023.1 Salmonella enterica strain PNUSAS393100 SAMN37875178-rid19904533.denovo.23, whole genome shotgun sequence	44729..45371		enterobacteriales	IncFII(S)	100	262 / 262	ABOBYY010000023.1 Salmonella enterica strain PNUSAS393100 SAMN37875178-rid19904533.denovo.23, whole genome shotgun sequence	29383..29644																																									avrA	ABOBYY010000004.1	209589..210457	100	869	0						
GCA_032850725.1_PDT001947003.1_genomic.fna	Salmonella_enterica	0.5219	198.83 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBYW010000001.1 Salmonella enterica strain PNUSAS393085 SAMN37875183-rid19902373.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBYW010000047.1 Salmonella enterica strain PNUSAS393085 SAMN37875183-rid19902373.guided.37, whole genome shotgun sequence	1142..1579	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOBYW010000002.1	208058..208926	99.77	870	0						
GCA_032850745.1_PDT001947002.1_genomic.fna	Salmonella_enterica	0.5211	284.063 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBYV010000004.1 Salmonella enterica strain PNUSAS393119 SAMN37875175-rid19900473.denovo.04, whole genome shotgun sequence	162094..162531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBYV010000034.1 Salmonella enterica strain PNUSAS393119 SAMN37875175-rid19900473.guided.26, whole genome shotgun sequence	4774..5211	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBYV010000019.1 Salmonella enterica strain PNUSAS393119 SAMN37875175-rid19900473.denovo.19, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOBYV010000019.1 Salmonella enterica strain PNUSAS393119 SAMN37875175-rid19900473.denovo.19, whole genome shotgun sequence	5032..5293																																																avrA	ABOBYV010000001.1	506363..507232	99.54	870	0						
GCA_032850765.1_PDT001947001.1_genomic.fna	Salmonella_enterica	0.5216	428.41 KB	4	aroC_159,dnaN_123,hemD_110,hisD_175,purE_36,sucA_162,thrA_150	507	9:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_159	dnaN	100	100	dnaN_123	hemD	100	100	hemD_110	hisD	100	100	hisD_175	purE	100	100	purE_36	sucA	100	100	sucA_162	thrA	100	100	thrA_150	9	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Ndolo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBYU010000004.1 Salmonella enterica strain PNUSAS393095 SAMN37875177-rid19899613.denovo.04, whole genome shotgun sequence	390101..390538	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBYU010000031.1 Salmonella enterica strain PNUSAS393095 SAMN37875177-rid19899613.guided.24, whole genome shotgun sequence	9073..9510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032850785.1_PDT001947000.1_genomic.fna	Salmonella_enterica	0.5207	406.91 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBYX010000001.1 Salmonella enterica strain PNUSAS393091 SAMN37875189-rid19903753.denovo.01, whole genome shotgun sequence	199657..200094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBYX010000028.1 Salmonella enterica strain PNUSAS393091 SAMN37875189-rid19903753.guided.22, whole genome shotgun sequence	5696..6133	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBYX010000018.1 Salmonella enterica strain PNUSAS393091 SAMN37875189-rid19903753.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOBYX010000020.1 Salmonella enterica strain PNUSAS393091 SAMN37875189-rid19903753.denovo.21, whole genome shotgun sequence	3403..3664		enterobacteriales	IncX1	98.93	374 / 374	ABOBYX010000014.1 Salmonella enterica strain PNUSAS393091 SAMN37875189-rid19903753.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABOBYX010000002.1	553480..554349	99.54	870	0						
GCA_032850825.1_PDT001946999.1_genomic.fna	Salmonella_enterica	0.5211	322.05 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBYZ010000003.1 Salmonella enterica strain PNUSAS393120 SAMN37875173-rid19897453.denovo.03, whole genome shotgun sequence	326569..327006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBYZ010000043.1 Salmonella enterica strain PNUSAS393120 SAMN37875173-rid19897453.guided.22, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBYZ010000001.1	551169..552038	99.195	870	0						
GCA_032850845.1_PDT001946994.1_genomic.fna	Salmonella_enterica	0.5211	310.567 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOBZD010000003.1 Salmonella enterica strain PNUSAS393118 SAMN37875172-rid19898613.denovo.03, whole genome shotgun sequence	162570..163007	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOBZD010000029.1 Salmonella enterica strain PNUSAS393118 SAMN37875172-rid19898613.guided.21, whole genome shotgun sequence	10120..10557	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOBZD010000020.1 Salmonella enterica strain PNUSAS393118 SAMN37875172-rid19898613.denovo.20, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOBZD010000020.1 Salmonella enterica strain PNUSAS393118 SAMN37875172-rid19898613.denovo.20, whole genome shotgun sequence	5032..5293																																																avrA	ABOBZD010000001.1	553077..553946	99.54	870	0						
GCA_032850875.1_PDT001946996.1_genomic.fna	Salmonella_enterica	0.5218	337.331 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBZC010000001.1 Salmonella enterica strain PNUSAS393096 SAMN37875185-rid19905583.denovo.01, whole genome shotgun sequence	404266..404703	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOBZC010000038.1 Salmonella enterica strain PNUSAS393096 SAMN37875185-rid19905583.guided.22, whole genome shotgun sequence	23332..23769	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBZC010000002.1	94086..94955	99.655	870	0						
GCA_032850905.1_PDT001946998.1_genomic.fna	Salmonella_enterica	0.5206	297.703 KB	6	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBZA010000001.1 Salmonella enterica strain PNUSAS393093 SAMN37875184-rid19903743.denovo.01, whole genome shotgun sequence	458936..459373	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBZA010000050.1 Salmonella enterica strain PNUSAS393093 SAMN37875184-rid19903743.guided.37, whole genome shotgun sequence	1271..1708	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOBZA010000021.1 Salmonella enterica strain PNUSAS393093 SAMN37875184-rid19903743.denovo.21, whole genome shotgun sequence	48429..49071	enterobacteriales	IncFII(S)	100	262 / 262	ABOBZA010000021.1 Salmonella enterica strain PNUSAS393093 SAMN37875184-rid19903743.denovo.21, whole genome shotgun sequence	64156..64417		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOBZA010000018.1 Salmonella enterica strain PNUSAS393093 SAMN37875184-rid19903743.denovo.18, whole genome shotgun sequence	32299..32440																																									avrA	ABOBZA010000004.1	174499..175368	99.885	870	0						
GCA_032851005.1_PDT001946989.1_genomic.fna	Salmonella_enterica	0.5214	166.181 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBZH010000003.1 Salmonella enterica strain PNUSAS393123 SAMN37875168-rid19897443.denovo.03, whole genome shotgun sequence	144771..145208	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBZH010000058.1 Salmonella enterica strain PNUSAS393123 SAMN37875168-rid19897443.guided.23, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOBZH010000006.1	39473..40341	99.77	870	0						
GCA_032851025.1_PDT001946988.1_genomic.fna	Salmonella_enterica	0.5208	397.305 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBZI010000001.1 Salmonella enterica strain PNUSAS393125 SAMN37875170-rid19903723.denovo.01, whole genome shotgun sequence	628392..628829	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBZI010000035.1 Salmonella enterica strain PNUSAS393125 SAMN37875170-rid19903723.guided.28, whole genome shotgun sequence	4734..5171	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOBZI010000021.1 Salmonella enterica strain PNUSAS393125 SAMN37875170-rid19903723.denovo.21, whole genome shotgun sequence	6118..6651																																																						avrA	ABOBZI010000019.1	39461..40331	99.196	871	0						
GCA_032851045.1_PDT001946987.1_genomic.fna	Salmonella_enterica	0.5219	191.426 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBZK010000003.1 Salmonella enterica strain PNUSAS393122 SAMN37875167-rid19900453.denovo.03, whole genome shotgun sequence	145231..145668	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBZK010000049.1 Salmonella enterica strain PNUSAS393122 SAMN37875167-rid19900453.guided.34, whole genome shotgun sequence	8753..9190	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOBZK010000006.1	39440..40308	99.77	870	0						
GCA_032851065.1_PDT001946986.1_genomic.fna	Salmonella_enterica	0.523	382.326 KB	4	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBZJ010000001.1 Salmonella enterica strain PNUSAS393124 SAMN37875169-rid19905573.denovo.01, whole genome shotgun sequence	821547..821984	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBZJ010000038.1 Salmonella enterica strain PNUSAS393124 SAMN37875169-rid19905573.guided.27, whole genome shotgun sequence	1819..2256	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032851085.1_PDT001946985.1_genomic.fna	Salmonella_enterica	0.5208	159.685 KB	9	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOBZN010000003.1 Salmonella enterica strain PNUSAS393126 SAMN37875171-rid19900443.denovo.03, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOBZN010000050.1 Salmonella enterica strain PNUSAS393126 SAMN37875171-rid19900443.guided.32, whole genome shotgun sequence	10054..10491	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOBZN010000025.1 Salmonella enterica strain PNUSAS393126 SAMN37875171-rid19900443.denovo.25, whole genome shotgun sequence	2806..3339																																																						avrA	ABOBZN010000022.1	39342..40211	99.425	870	0						
GCA_032851105.1_PDT001946965.1_genomic.fna	Salmonella_enterica	0.5199	81.649 KB	20	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBZL010000015.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325771 SAMN37875074-rid19897373.denovo.015, whole genome shotgun sequence	52341..52778	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOBZL010000091.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325771 SAMN37875074-rid19897373.denovo.094, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOBZL010000091.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325771 SAMN37875074-rid19897373.denovo.094, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOBZL010000186.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325771 SAMN37875074-rid19897373.guided.057, whole genome shotgun sequence	15692..16129	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOBZL010000188.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325771 SAMN37875074-rid19897373.guided.100, whole genome shotgun sequence	1890..2726	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOBZL010000188.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325771 SAMN37875074-rid19897373.guided.100, whole genome shotgun sequence	1087..1890	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOBZL010000102.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325771 SAMN37875074-rid19897373.denovo.106, whole genome shotgun sequence	787..1992	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOBZL010000189.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325771 SAMN37875074-rid19897373.guided.108, whole genome shotgun sequence	2310..3515	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOBZL010000101.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325771 SAMN37875074-rid19897373.denovo.105, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOBZL010000091.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325771 SAMN37875074-rid19897373.denovo.094, whole genome shotgun sequence	1831..2092		enterobacteriales	IncFII	96.95	262 / 261	ABOBZL010000188.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325771 SAMN37875074-rid19897373.guided.100, whole genome shotgun sequence	3349..3610		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOBZL010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325771 SAMN37875074-rid19897373.denovo.076, whole genome shotgun sequence	3700..3841		enterobacteriales	IncX1	100	373 / 373	ABOBZL010000108.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325771 SAMN37875074-rid19897373.denovo.113, whole genome shotgun sequence	2732..3104																											avrA	ABOBZL010000044.1	39484..40353	99.655	870	0						
GCA_032851145.1_PDT001946963.1_genomic.fna	Salmonella_enterica	0.5214	171.506 KB	10	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOBZO010000001.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325770 SAMN37875073-rid19897353.denovo.01, whole genome shotgun sequence	378783..379220	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOBZO010000073.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325770 SAMN37875073-rid19897353.guided.43, whole genome shotgun sequence	15239..15676	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABOBZO010000045.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325770 SAMN37875073-rid19897353.denovo.48, whole genome shotgun sequence	3981..4111																																																						avrA	ABOBZO010000006.1	39482..40351	99.425	870	0						
GCA_032851165.1_PDT001946962.1_genomic.fna	Salmonella_enterica	0.5233	60.704 KB	24	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	-:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	-	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOBZP010000021.1 Salmonella enterica subsp. enterica serovar Braenderup strain FSIS12325772 SAMN37875075-rid19897343.denovo.021, whole genome shotgun sequence	52405..52842	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOBZP010000144.1 Salmonella enterica subsp. enterica serovar Braenderup strain FSIS12325772 SAMN37875075-rid19897343.guided.066, whole genome shotgun sequence	10602..11039	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOBZP010000100.1 Salmonella enterica subsp. enterica serovar Braenderup strain FSIS12325772 SAMN37875075-rid19897343.denovo.103, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOBZP010000146.1 Salmonella enterica subsp. enterica serovar Braenderup strain FSIS12325772 SAMN37875075-rid19897343.guided.116, whole genome shotgun sequence	946..1590	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOBZP010000100.1 Salmonella enterica subsp. enterica serovar Braenderup strain FSIS12325772 SAMN37875075-rid19897343.denovo.103, whole genome shotgun sequence	1519..1649	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOBZP010000146.1 Salmonella enterica subsp. enterica serovar Braenderup strain FSIS12325772 SAMN37875075-rid19897343.guided.116, whole genome shotgun sequence	290..420																																																avrA	ABOBZP010000020.1	62012..62881	98.966	870	0						
GCA_032851185.1_PDT001946961.1_genomic.fna	Salmonella_enterica	0.5213	61.282 KB	26	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOBZR010000018.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325775 SAMN37875078-rid19897333.denovo.018, whole genome shotgun sequence	52462..52899	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOBZR010000217.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325775 SAMN37875078-rid19897333.guided.093, whole genome shotgun sequence	552..989	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	ABOBZR010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325775 SAMN37875078-rid19897333.denovo.134, whole genome shotgun sequence	1914..2595	enterobacteriales	IncFII	96.56	262 / 261	ABOBZR010000044.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325775 SAMN37875078-rid19897333.denovo.044, whole genome shotgun sequence	36476..36737		enterobacteriales	IncX1	100	373 / 373	ABOBZR010000105.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325775 SAMN37875078-rid19897333.denovo.108, whole genome shotgun sequence	2153..2525																																									avrA	ABOBZR010000039.1	39484..40353	99.655	870	0						
GCA_032851205.1_PDT001946958.1_genomic.fna	Salmonella_enterica	0.5218	150.031 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBZS010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325773 SAMN37875076-rid19897303.denovo.01, whole genome shotgun sequence	134924..135361	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOBZS010000047.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325773 SAMN37875076-rid19897303.denovo.50, whole genome shotgun sequence	11972..12763	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOBZS010000047.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325773 SAMN37875076-rid19897303.denovo.50, whole genome shotgun sequence	11972..12763	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOBZS010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325773 SAMN37875076-rid19897303.guided.31, whole genome shotgun sequence	24944..25381	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOBZS010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325773 SAMN37875076-rid19897303.guided.49, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOBZS010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325773 SAMN37875076-rid19897303.guided.49, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOBZS010000047.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325773 SAMN37875076-rid19897303.denovo.50, whole genome shotgun sequence	10628..11467	Sulfamethoxazole	U12338	sul1	100	840/840	ABOBZS010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325773 SAMN37875076-rid19897303.guided.49, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOBZS010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325773 SAMN37875076-rid19897303.denovo.42, whole genome shotgun sequence	1827..3026	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOBZS010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325773 SAMN37875076-rid19897303.guided.58, whole genome shotgun sequence	1828..3027	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOBZS010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325773 SAMN37875076-rid19897303.guided.59, whole genome shotgun sequence	1828..3027	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																											gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOBZS010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325773 SAMN37875076-rid19897303.denovo.45, whole genome shotgun sequence	9109..9668																																																						avrA	ABOBZS010000016.1	39665..40534	99.655	870	0						
GCA_032851225.1_PDT001946960.1_genomic.fna	Salmonella_enterica	0.5218	114.055 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBZQ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.denovo.001, whole genome shotgun sequence	232703..233140	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOBZQ010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.denovo.058, whole genome shotgun sequence	11972..12763	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOBZQ010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.denovo.058, whole genome shotgun sequence	11972..12763	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOBZQ010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.denovo.078, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOBZQ010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.denovo.078, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOBZQ010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.guided.035, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOBZQ010000103.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.guided.068, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOBZQ010000103.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.guided.068, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOBZQ010000104.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.guided.077, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOBZQ010000104.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.guided.077, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOBZQ010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.denovo.081, whole genome shotgun sequence	762..1637	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOBZQ010000106.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.guided.082, whole genome shotgun sequence	802..1677	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOBZQ010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.denovo.074, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOBZQ010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.guided.087, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOBZQ010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.denovo.058, whole genome shotgun sequence	10628..11467	Sulfamethoxazole	U12338	sul1	100	840/840	ABOBZQ010000103.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.guided.068, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOBZQ010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.denovo.048, whole genome shotgun sequence	1835..3034	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOBZQ010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.guided.064, whole genome shotgun sequence	1866..3065	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOBZQ010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.denovo.072, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOBZQ010000105.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.guided.079, whole genome shotgun sequence	1698..2171	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOBZQ010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325774 SAMN37875077-rid19897323.denovo.045, whole genome shotgun sequence	9109..9668																																																						avrA	ABOBZQ010000012.1	39430..40299	99.655	870	0						
GCA_032851245.1_PDT001946953.1_genomic.fna	Salmonella_enterica	0.5217	194.989 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOBZV010000003.1 Salmonella enterica strain PNUSAS392974 SAMN37875036-rid19897253.denovo.03, whole genome shotgun sequence	144280..144717	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOBZV010000055.1 Salmonella enterica strain PNUSAS392974 SAMN37875036-rid19897253.guided.28, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032851345.1_PDT001946949.1_genomic.fna	Salmonella_enterica	0.5214	396.728 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_690	3492	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_690	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOBZY010000001.1 Salmonella enterica strain PNUSAS392973 SAMN37875037-rid19897213.denovo.01, whole genome shotgun sequence	175406..175843	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOBZY010000029.1 Salmonella enterica strain PNUSAS392973 SAMN37875037-rid19897213.guided.14, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOBZY010000002.1	515578..516447	99.77	870	0						
GCA_032851365.1_PDT001946950.1_genomic.fna	Salmonella_enterica	0.5213	439.014 KB	4	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,fosA7,fosA7,sul1,sul1	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOCAA010000001.1 Salmonella enterica strain PNUSAS392975 SAMN37875034-rid19897223.denovo.01, whole genome shotgun sequence	383906..384343	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOCAA010000013.1 Salmonella enterica strain PNUSAS392975 SAMN37875034-rid19897223.denovo.13, whole genome shotgun sequence	79250..80041	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCAA010000013.1 Salmonella enterica strain PNUSAS392975 SAMN37875034-rid19897223.denovo.13, whole genome shotgun sequence	79250..80041	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOCAA010000030.1 Salmonella enterica strain PNUSAS392975 SAMN37875034-rid19897223.guided.23, whole genome shotgun sequence	5868..6659	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCAA010000030.1 Salmonella enterica strain PNUSAS392975 SAMN37875034-rid19897223.guided.23, whole genome shotgun sequence	5868..6659	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.26	438/438	ABOCAA010000031.1 Salmonella enterica strain PNUSAS392975 SAMN37875034-rid19897223.guided.24, whole genome shotgun sequence	8806..9243	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABOCAA010000008.1 Salmonella enterica strain PNUSAS392975 SAMN37875034-rid19897223.denovo.08, whole genome shotgun sequence	166241..166663	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABOCAA010000028.1 Salmonella enterica strain PNUSAS392975 SAMN37875034-rid19897223.guided.20, whole genome shotgun sequence	36813..37235	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABOCAA010000013.1 Salmonella enterica strain PNUSAS392975 SAMN37875034-rid19897223.denovo.13, whole genome shotgun sequence	80546..81385	Sulfamethoxazole	U12338	sul1	100	840/840	ABOCAA010000030.1 Salmonella enterica strain PNUSAS392975 SAMN37875034-rid19897223.guided.23, whole genome shotgun sequence	7164..8003	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOCAA010000013.1 Salmonella enterica strain PNUSAS392975 SAMN37875034-rid19897223.denovo.13, whole genome shotgun sequence	90907..91048																																																						avrA	ABOCAA010000002.1	518982..519851	99.54	870	0						
GCA_032851945.1_PDT001946921.1_genomic.fna	Salmonella_enterica	0.5227	131.3 KB	13	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440I,ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOCBA010000001.1 Salmonella enterica subsp. enterica serovar Berta strain FSIS12325767 SAMN37875044-rid19896933.denovo.01, whole genome shotgun sequence	291917..292354	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOCBA010000087.1 Salmonella enterica subsp. enterica serovar Berta strain FSIS12325767 SAMN37875044-rid19896933.guided.52, whole genome shotgun sequence	6192..6629	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOCBA010000055.1 Salmonella enterica subsp. enterica serovar Berta strain FSIS12325767 SAMN37875044-rid19896933.denovo.57, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABOCBA010000058.1 Salmonella enterica subsp. enterica serovar Berta strain FSIS12325767 SAMN37875044-rid19896933.denovo.60, whole genome shotgun sequence	2528..2639		enterobacteriales	ColpVC	98.96	193 / 193	ABOCBA010000063.1 Salmonella enterica subsp. enterica serovar Berta strain FSIS12325767 SAMN37875044-rid19896933.denovo.65, whole genome shotgun sequence	793..985																																									avrA	ABOCBA010000006.1	94166..95034	99.425	870	0						
GCA_032852085.1_PDT001946920.1_genomic.fna	Salmonella_enterica	0.521	125.44 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),Col(pHAD28),ColpVC,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCBI010000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325765 SAMN37875040-rid19896923.denovo.009, whole genome shotgun sequence	52072..52509	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCBI010000122.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325765 SAMN37875040-rid19896923.guided.078, whole genome shotgun sequence	5040..5477	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOCBI010000048.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325765 SAMN37875040-rid19896923.denovo.049, whole genome shotgun sequence	14271..15416	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOCBI010000120.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325765 SAMN37875040-rid19896923.guided.053, whole genome shotgun sequence	13901..15046	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOCBI010000071.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325765 SAMN37875040-rid19896923.denovo.073, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOCBI010000123.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325765 SAMN37875040-rid19896923.guided.094, whole genome shotgun sequence	1855..2670	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOCBI010000071.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325765 SAMN37875040-rid19896923.denovo.073, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCBI010000124.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325765 SAMN37875040-rid19896923.guided.095, whole genome shotgun sequence	862..2061	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOCBI010000083.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325765 SAMN37875040-rid19896923.denovo.087, whole genome shotgun sequence	371..501	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOCBI010000084.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325765 SAMN37875040-rid19896923.denovo.088, whole genome shotgun sequence	3134..3264		enterobacteriales	ColpVC	98.96	193 / 193	ABOCBI010000098.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325765 SAMN37875040-rid19896923.denovo.104, whole genome shotgun sequence	991..1183		enterobacteriales	IncC	100	417 / 417	ABOCBI010000035.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325765 SAMN37875040-rid19896923.denovo.035, whole genome shotgun sequence	38349..38765																																		avrA	ABOCBI010000004.1	98459..99328	99.885	870	0						
GCA_032852105.1_PDT001946918.1_genomic.fna	Salmonella_enterica	0.5208	115.854 KB	15	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		6	IncC,IncFIA,IncFIB(pB171),IncFII(S),IncFII(pCoo),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCBK010000001.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.denovo.001, whole genome shotgun sequence	159436..159873	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCBK010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.denovo.046, whole genome shotgun sequence	2501..3337	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOCBK010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.denovo.046, whole genome shotgun sequence	3337..4140	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOCBK010000108.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.guided.049, whole genome shotgun sequence	28364..29200	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOCBK010000108.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.guided.049, whole genome shotgun sequence	27561..28364	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOCBK010000109.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.guided.051, whole genome shotgun sequence	14809..15246	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOCBK010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.denovo.046, whole genome shotgun sequence	33357..34502	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOCBK010000112.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.guided.085, whole genome shotgun sequence	1656..2801	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOCBK010000076.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.denovo.081, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOCBK010000111.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.guided.078, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOCBK010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.denovo.046, whole genome shotgun sequence	4201..5016	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOCBK010000108.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.guided.049, whole genome shotgun sequence	26685..27500	Sulfamethoxazole	AY034138	tet(A)	100	1240/1275	ABOCBK010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.denovo.046, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOCBK010000108.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.guided.049, whole genome shotgun sequence	30461..31735	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOCBK010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.denovo.047, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFIA	99.74	388 / 388	ABOCBK010000055.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.denovo.058, whole genome shotgun sequence	2002..2388		enterobacteriales	IncFIB(pB171)	99.38	643 / 643	ABOCBK010000065.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.denovo.069, whole genome shotgun sequence	5527..6169		enterobacteriales	IncFII(S)	97.71	262 / 262	ABOCBK010000051.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.denovo.054, whole genome shotgun sequence	16913..17172		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	ABOCBK010000066.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.denovo.070, whole genome shotgun sequence	3373..3634		enterobacteriales	IncX1	98.66	374 / 374	ABOCBK010000047.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325768 SAMN37875047-rid19896903.denovo.048, whole genome shotgun sequence	25047..25420																				avrA	ABOCBK010000004.1	109436..110304	99.54	870	0						
GCA_032852125.1_PDT001946919.1_genomic.fna	Salmonella_enterica	0.522	78.136 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		1	IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCBJ010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325766 SAMN37875042-rid19896913.denovo.001, whole genome shotgun sequence	15451..15888	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCBJ010000051.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325766 SAMN37875042-rid19896913.denovo.051, whole genome shotgun sequence	2518..3354	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOCBJ010000051.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325766 SAMN37875042-rid19896913.denovo.051, whole genome shotgun sequence	3354..4157	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOCBJ010000157.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325766 SAMN37875042-rid19896913.guided.092, whole genome shotgun sequence	4810..5646	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOCBJ010000157.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325766 SAMN37875042-rid19896913.guided.092, whole genome shotgun sequence	4007..4810	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOCBJ010000161.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325766 SAMN37875042-rid19896913.guided.111, whole genome shotgun sequence	1312..1749	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOCBJ010000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325766 SAMN37875042-rid19896913.denovo.004, whole genome shotgun sequence	121295..122440	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOCBJ010000158.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325766 SAMN37875042-rid19896913.guided.095, whole genome shotgun sequence	1773..2918	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.27	1214/1215	ABOCBJ010000100.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325766 SAMN37875042-rid19896913.denovo.105, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABOCBJ010000160.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325766 SAMN37875042-rid19896913.guided.104, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOCBJ010000051.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325766 SAMN37875042-rid19896913.denovo.051, whole genome shotgun sequence	4218..5033	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOCBJ010000157.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325766 SAMN37875042-rid19896913.guided.092, whole genome shotgun sequence	3131..3946	Sulfamethoxazole	AY034138	tet(A)	100	1257/1275	ABOCBJ010000051.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325766 SAMN37875042-rid19896913.denovo.051, whole genome shotgun sequence	1..1257	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOCBJ010000157.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325766 SAMN37875042-rid19896913.guided.092, whole genome shotgun sequence	6907..8181	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOCBJ010000046.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325766 SAMN37875042-rid19896913.denovo.046, whole genome shotgun sequence	17493..17909																																																						avrA	ABOCBJ010000040.1	39435..40304	99.885	870	0						
GCA_032852145.1_PDT001946917.1_genomic.fna	Salmonella_enterica	0.5212	117.447 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(3)-IV,floR,floR,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	2	ColpVC,IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCBL010000011.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325764 SAMN37875038-rid19896893.denovo.011, whole genome shotgun sequence	76136..76573	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOCBL010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325764 SAMN37875038-rid19896893.denovo.067, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOCBL010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325764 SAMN37875038-rid19896893.denovo.067, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOCBL010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325764 SAMN37875038-rid19896893.guided.053, whole genome shotgun sequence	16471..16908	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOCBL010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325764 SAMN37875038-rid19896893.guided.076, whole genome shotgun sequence	247..1272	Hygromycin	V01499	aac(3)-IV	99.87	777/777	ABOCBL010000104.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325764 SAMN37875038-rid19896893.guided.090, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	aac(3)-IV	100	777/777	ABOCBL010000105.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325764 SAMN37875038-rid19896893.guided.091, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOCBL010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325764 SAMN37875038-rid19896893.denovo.071, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOCBL010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325764 SAMN37875038-rid19896893.guided.075, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	dfrA14	100	474/474	ABOCBL010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325764 SAMN37875038-rid19896893.denovo.068, whole genome shotgun sequence	3121..3594	Trimethoprim	AF393510	dfrA14	100	474/474	ABOCBL010000103.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325764 SAMN37875038-rid19896893.guided.081, whole genome shotgun sequence	467..940	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																											gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	ColpVC	98.96	193 / 193	ABOCBL010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325764 SAMN37875038-rid19896893.denovo.088, whole genome shotgun sequence	910..1102	enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOCBL010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325764 SAMN37875038-rid19896893.denovo.046, whole genome shotgun sequence	9109..9668																																																avrA	ABOCBL010000002.1	124281..125150	99.655	870	0						
GCA_032852185.1_PDT001946916.1_genomic.fna	Salmonella_enterica	0.5227	61.995 KB	25	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOCBM010000060.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325763 SAMN37875035-rid19896883.denovo.060, whole genome shotgun sequence	12491..12928	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOCBM010000209.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325763 SAMN37875035-rid19896883.guided.138, whole genome shotgun sequence	1217..1654	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOCBM010000119.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325763 SAMN37875035-rid19896883.denovo.121, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABOCBM010000112.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325763 SAMN37875035-rid19896883.denovo.114, whole genome shotgun sequence	3175..3285																																																avrA	ABOCBM010000003.1	137270..138139	99.425	870	0						
GCA_032852945.1_PDT001946870.1_genomic.fna	Salmonella_enterica	0.5214	407.495 KB	4	aroC_10,dnaN_71,hemD_43,hisD_12,purE_15,sucA_20,thrA_18	4851	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_71	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_18	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOCDA010000001.1 Salmonella enterica strain PNUSAS393028 SAMN37874127-rid19896423.denovo.01, whole genome shotgun sequence	787008..787445	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOCDA010000025.1 Salmonella enterica strain PNUSAS393028 SAMN37874127-rid19896423.guided.16, whole genome shotgun sequence	28021..28458	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCDA010000003.1	173508..174377	99.54	870	0						
GCA_032852985.1_PDT001946869.1_genomic.fna	Salmonella_enterica	0.5202	394.98 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCCZ010000001.1 Salmonella enterica strain PNUSAS393030 SAMN37874125-rid19896413.denovo.01, whole genome shotgun sequence	563816..564253	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCCZ010000034.1 Salmonella enterica strain PNUSAS393030 SAMN37874125-rid19896413.guided.25, whole genome shotgun sequence	664..1101	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCCZ010000011.1	140233..141101	99.195	870	0						
GCA_032853005.1_PDT001946867.1_genomic.fna	Salmonella_enterica	0.5218	568.742 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOCDC010000001.1 Salmonella enterica strain PNUSAS393026 SAMN37874129-rid19896393.denovo.01, whole genome shotgun sequence	150007..150444	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOCDC010000030.1 Salmonella enterica strain PNUSAS393026 SAMN37874129-rid19896393.guided.19, whole genome shotgun sequence	9742..10179	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCDC010000003.1	553473..554342	99.77	870	0						
GCA_032853025.1_PDT001946868.1_genomic.fna	Salmonella_enterica	0.52	460.092 KB	3	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCDB010000001.1 Salmonella enterica strain PNUSAS393023 SAMN37874132-rid19896403.denovo.01, whole genome shotgun sequence	887632..888069	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCDB010000023.1 Salmonella enterica strain PNUSAS393023 SAMN37874132-rid19896403.guided.18, whole genome shotgun sequence	10121..10558	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCDB010000004.1	162693..163562	98.966	870	0						
GCA_032853045.1_PDT001946866.1_genomic.fna	Salmonella_enterica	0.5212	478.79 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCDD010000001.1 Salmonella enterica strain PNUSAS393022 SAMN37874133-rid19896383.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCDD010000027.1 Salmonella enterica strain PNUSAS393022 SAMN37874133-rid19896383.guided.21, whole genome shotgun sequence	72..509	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCDD010000013.1 Salmonella enterica strain PNUSAS393022 SAMN37874133-rid19896383.denovo.13, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	ABOCDD010000017.1 Salmonella enterica strain PNUSAS393022 SAMN37874133-rid19896383.denovo.19, whole genome shotgun sequence	3423..3684																																																avrA	ABOCDD010000002.1	585418..586287	99.54	870	0						
GCA_032853065.1_PDT001946864.1_genomic.fna	Salmonella_enterica	0.5214	348.753 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCDG010000003.1 Salmonella enterica strain PNUSAS393029 SAMN37874126-rid19896363.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCDG010000039.1 Salmonella enterica strain PNUSAS393029 SAMN37874126-rid19896363.guided.28, whole genome shotgun sequence	12488..12925	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOCDG010000016.1 Salmonella enterica strain PNUSAS393029 SAMN37874126-rid19896363.denovo.16, whole genome shotgun sequence	44635..45277	enterobacteriales	IncFII(S)	100	262 / 262	ABOCDG010000016.1 Salmonella enterica strain PNUSAS393029 SAMN37874126-rid19896363.denovo.16, whole genome shotgun sequence	60362..60623																																																avrA	ABOCDG010000006.1	174541..175409	100	869	0						
GCA_032853085.1_PDT001946865.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCDE010000001.1 Salmonella enterica strain PNUSAS393021 SAMN37874134-rid19896373.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCDE010000026.1 Salmonella enterica strain PNUSAS393021 SAMN37874134-rid19896373.guided.19, whole genome shotgun sequence	1812..2249	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCDE010000011.1 Salmonella enterica strain PNUSAS393021 SAMN37874134-rid19896373.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOCDE010000015.1 Salmonella enterica strain PNUSAS393021 SAMN37874134-rid19896373.denovo.18, whole genome shotgun sequence	3385..3646																																																avrA	ABOCDE010000002.1	553636..554505	99.54	870	0						
GCA_032853105.1_PDT001946863.1_genomic.fna	Salmonella_enterica	0.5212	492.607 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCDF010000001.1 Salmonella enterica strain PNUSAS393025 SAMN37874130-rid19896353.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCDF010000022.1 Salmonella enterica strain PNUSAS393025 SAMN37874130-rid19896353.guided.18, whole genome shotgun sequence	4196..4633	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.76	643 / 643	ABOCDF010000011.1 Salmonella enterica strain PNUSAS393025 SAMN37874130-rid19896353.denovo.11, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	ABOCDF010000014.1 Salmonella enterica strain PNUSAS393025 SAMN37874130-rid19896353.denovo.16, whole genome shotgun sequence	3436..3697																																																avrA	ABOCDF010000002.1	553499..554368	99.54	870	0						
GCA_032853145.1_PDT001946860.1_genomic.fna	Salmonella_enterica	0.5213	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCDJ010000001.1 Salmonella enterica strain PNUSAS393024 SAMN37874131-rid19896323.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCDJ010000024.1 Salmonella enterica strain PNUSAS393024 SAMN37874131-rid19896323.guided.13, whole genome shotgun sequence	32404..32841	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.76	643 / 643	ABOCDJ010000011.1 Salmonella enterica strain PNUSAS393024 SAMN37874131-rid19896323.denovo.11, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOCDJ010000015.1 Salmonella enterica strain PNUSAS393024 SAMN37874131-rid19896323.denovo.18, whole genome shotgun sequence	3395..3656																																																avrA	ABOCDJ010000002.1	553499..554368	99.54	870	0						
GCA_032853165.1_PDT001946859.1_genomic.fna	Salmonella_enterica	0.5226	563.194 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCDL010000001.1 Salmonella enterica strain PNUSAS393035 SAMN37874120-rid19896313.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCDL010000034.1 Salmonella enterica strain PNUSAS393035 SAMN37874120-rid19896313.guided.21, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032853185.1_PDT001946862.1_genomic.fna	Salmonella_enterica	0.5219	493.511 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOCDH010000001.1 Salmonella enterica strain PNUSAS393031 SAMN37874124-rid19896343.denovo.01, whole genome shotgun sequence	779838..780275	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCDH010000006.1	140114..140983	99.425	870	0						
GCA_032853205.1_PDT001946861.1_genomic.fna	Salmonella_enterica	0.5224	526.648 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCDI010000001.1 Salmonella enterica strain PNUSAS393027 SAMN37874128-rid19896333.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCDI010000024.1 Salmonella enterica strain PNUSAS393027 SAMN37874128-rid19896333.guided.15, whole genome shotgun sequence	11521..11958	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCDI010000002.1	183087..183956	98.966	870	0						
GCA_032853215.1_PDT001946858.1_genomic.fna	Salmonella_enterica	0.5204	394.986 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCDK010000001.1 Salmonella enterica strain PNUSAS393032 SAMN37874123-rid19896303.denovo.01, whole genome shotgun sequence	572723..573160	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCDK010000034.1 Salmonella enterica strain PNUSAS393032 SAMN37874123-rid19896303.guided.26, whole genome shotgun sequence	948..1385	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCDK010000012.1	93876..94744	99.195	870	0						
GCA_032853245.1_PDT001946857.1_genomic.fna	Salmonella_enterica	0.5222	718.678 KB	2	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	9	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-55,blaTEM-216,blaTEM-214,blaTEM-209,blaTEM-206,blaTEM-141,blaTEM-1B,blaCTX-M-55,blaTEM-214,blaTEM-206,blaTEM-141,blaTEM-1B,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	1	Col(BS512)	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCDM010000001.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.denovo.01, whole genome shotgun sequence	1329303..1329740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCDM010000028.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.guided.21, whole genome shotgun sequence	2885..3322	Amikacin, Tobramycin	NC_003197	blaCTX-M-55	100	876/876	ABOCDM010000019.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.denovo.23, whole genome shotgun sequence	731..1606	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-216	100	738/861	ABOCDM010000019.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.denovo.23, whole genome shotgun sequence	2388..3125	Unknown Beta-lactam	KF944358	blaTEM-214	100	738/861	ABOCDM010000019.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.denovo.23, whole genome shotgun sequence	2388..3125	Unknown Beta-lactam	KP050491	blaTEM-209	100	738/861	ABOCDM010000019.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.denovo.23, whole genome shotgun sequence	2388..3125	Unknown Beta-lactam	KF240808	blaTEM-206	100	738/861	ABOCDM010000019.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.denovo.23, whole genome shotgun sequence	2388..3125	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	100	738/861	ABOCDM010000019.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.denovo.23, whole genome shotgun sequence	2388..3125	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	100	738/861	ABOCDM010000019.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.denovo.23, whole genome shotgun sequence	2388..3125	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABOCDM010000029.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.guided.24, whole genome shotgun sequence	408..1283	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-214	99.87	746/861	ABOCDM010000029.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.guided.24, whole genome shotgun sequence	2065..2810	Unknown Beta-lactam	KP050491	blaTEM-206	99.87	746/861	ABOCDM010000029.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.guided.24, whole genome shotgun sequence	2065..2810	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	99.87	746/861	ABOCDM010000029.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.guided.24, whole genome shotgun sequence	2065..2810	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	99.87	746/861	ABOCDM010000029.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.guided.24, whole genome shotgun sequence	2065..2810	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	ABOCDM010000016.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.denovo.18, whole genome shotgun sequence	2339..3538	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCDM010000026.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.guided.17, whole genome shotgun sequence	7043..8242	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	Col(BS512)	100	233 / 233	ABOCDM010000021.1 Salmonella enterica strain PNUSAS393034 SAMN37874121-rid19896293.denovo.26, whole genome shotgun sequence	400..632																																																						avrA	ABOCDM010000002.1	144730..145599	99.31	870	0						
GCA_032853265.1_PDT001946856.1_genomic.fna	Salmonella_enterica	0.5212	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCDN010000001.1 Salmonella enterica strain PNUSAS393036 SAMN37874116-rid19896283.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCDN010000023.1 Salmonella enterica strain PNUSAS393036 SAMN37874116-rid19896283.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCDN010000011.1 Salmonella enterica strain PNUSAS393036 SAMN37874116-rid19896283.denovo.12, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABOCDN010000015.1 Salmonella enterica strain PNUSAS393036 SAMN37874116-rid19896283.denovo.18, whole genome shotgun sequence	3436..3697																																																avrA	ABOCDN010000002.1	553634..554503	99.54	870	0						
GCA_032853285.1_PDT001946855.1_genomic.fna	Salmonella_enterica	0.5219	279.266 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_112,sucA_564,thrA_2	2936	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_112	sucA	100	100	sucA_564	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCDO010000001.1 Salmonella enterica strain PNUSAS393039 SAMN37874119-rid19896273.denovo.01, whole genome shotgun sequence	385805..386242	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCDO010000045.1 Salmonella enterica strain PNUSAS393039 SAMN37874119-rid19896273.guided.31, whole genome shotgun sequence	5182..5619	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOCDO010000016.1 Salmonella enterica strain PNUSAS393039 SAMN37874119-rid19896273.denovo.16, whole genome shotgun sequence	48406..49048	enterobacteriales	IncFII(S)	100	262 / 262	ABOCDO010000016.1 Salmonella enterica strain PNUSAS393039 SAMN37874119-rid19896273.denovo.16, whole genome shotgun sequence	64133..64394																																																avrA	ABOCDO010000004.1	208696..209565	99.885	870	0						
GCA_032853305.1_PDT001946853.1_genomic.fna	Salmonella_enterica	0.5213	490.112 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCDP010000001.1 Salmonella enterica strain PNUSAS393038 SAMN37874118-rid19896253.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCDP010000021.1 Salmonella enterica strain PNUSAS393038 SAMN37874118-rid19896253.guided.15, whole genome shotgun sequence	17871..18308	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCDP010000011.1 Salmonella enterica strain PNUSAS393038 SAMN37874118-rid19896253.denovo.11, whole genome shotgun sequence	40648..41290	enterobacteriales	IncFII(S)	100	262 / 262	ABOCDP010000014.1 Salmonella enterica strain PNUSAS393038 SAMN37874118-rid19896253.denovo.17, whole genome shotgun sequence	3272..3533																																																avrA	ABOCDP010000002.1	553547..554416	99.54	870	0						
GCA_032853325.1_PDT001946854.1_genomic.fna	Salmonella_enterica	0.5215	222.568 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aph(3')-Ia,aadA2b,aac(6')-Iaa,aph(3')-Ia,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		3	IncFIB(S),IncFII(S),IncQ1,IncQ1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCDR010000003.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.denovo.03, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.88	816/816	ABOCDR010000034.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.denovo.40, whole genome shotgun sequence	2330..3145	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EF015636	aadA2b	99.87	780/780	ABOCDR010000045.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.denovo.53, whole genome shotgun sequence	17..796	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABOCDR010000053.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.guided.36, whole genome shotgun sequence	2265..2702	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.88	816/816	ABOCDR010000055.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.guided.39, whole genome shotgun sequence	1..816	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EF015636	aadA2b	99.87	780/780	ABOCDR010000057.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.guided.51, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOCDR010000041.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.denovo.48, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOCDR010000056.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.guided.46, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABOCDR010000033.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.denovo.38, whole genome shotgun sequence	5127..6341	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABOCDR010000054.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.guided.37, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOCDR010000051.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.guided.26, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABOCDR010000033.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.denovo.38, whole genome shotgun sequence	3015..4190	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABOCDR010000054.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.guided.37, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																	enterobacteriales	IncFIB(S)	100	643 / 643	ABOCDR010000016.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.denovo.16, whole genome shotgun sequence	36056..36698	enterobacteriales	IncFII(S)	100	262 / 262	ABOCDR010000016.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.denovo.16, whole genome shotgun sequence	51783..52044		enterobacteriales	IncQ1	100	796 / 796	ABOCDR010000034.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.denovo.40, whole genome shotgun sequence	292..1087		enterobacteriales	IncQ1	100	796 / 796	ABOCDR010000055.1 Salmonella enterica strain PNUSAS393037 SAMN37874117-rid19896263.guided.39, whole genome shotgun sequence	4677..5472																																		avrA	ABOCDR010000001.1	506657..507526	99.885	870	0						
GCA_032853345.1_PDT001946852.1_genomic.fna	Salmonella_enterica	0.5216	761.033 KB	3	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCDQ010000002.1 Salmonella enterica strain PNUSAS393033 SAMN37874122-rid19896243.denovo.02, whole genome shotgun sequence	624789..625226	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCDQ010000022.1 Salmonella enterica strain PNUSAS393033 SAMN37874122-rid19896243.guided.17, whole genome shotgun sequence	4156..4593	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032853365.1_PDT001946851.1_genomic.fna	Salmonella_enterica	0.5157	376.44 KB	5	aroC_33,dnaN_26,hemD_30,hisD_282,purE_229,sucA_87,thrA_28	2374	50:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_282	purE	100	100	purE_229	sucA	100	100	sucA_87	thrA	100	100	thrA_28	50	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 50:r:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOCDS010000010.1 Salmonella enterica strain PNUSAS392972 SAMN37873915-rid19896233.denovo.10, whole genome shotgun sequence	95610..96047	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOCDS010000044.1 Salmonella enterica strain PNUSAS392972 SAMN37873915-rid19896233.guided.35, whole genome shotgun sequence	197..634	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCDS010000001.1	559309..560178	96.552	870	0						
GCA_032853385.1_PDT001946850.1_genomic.fna	Salmonella_enterica	0.5221	723.706 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOCDT010000001.1 Salmonella enterica strain PNUSAS392968 SAMN37873919-rid19896223.denovo.01, whole genome shotgun sequence	687395..687832	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOCDT010000028.1 Salmonella enterica strain PNUSAS392968 SAMN37873919-rid19896223.guided.15, whole genome shotgun sequence	16587..17024	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABOCDT010000011.1 Salmonella enterica strain PNUSAS392968 SAMN37873919-rid19896223.denovo.13, whole genome shotgun sequence	38841..39746	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOCDT010000030.1 Salmonella enterica strain PNUSAS392968 SAMN37873919-rid19896223.guided.23, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOCDT010000011.1 Salmonella enterica strain PNUSAS392968 SAMN37873919-rid19896223.denovo.13, whole genome shotgun sequence	26927..28140	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOCDT010000032.1 Salmonella enterica strain PNUSAS392968 SAMN37873919-rid19896223.guided.26, whole genome shotgun sequence	107..1320	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOCDT010000011.1 Salmonella enterica strain PNUSAS392968 SAMN37873919-rid19896223.denovo.13, whole genome shotgun sequence	32691..33530	Sulfamethoxazole	U12338	sul1	100	840/840	ABOCDT010000031.1 Salmonella enterica strain PNUSAS392968 SAMN37873919-rid19896223.guided.25, whole genome shotgun sequence	26..865	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOCDT010000011.1 Salmonella enterica strain PNUSAS392968 SAMN37873919-rid19896223.denovo.13, whole genome shotgun sequence	28741..30015	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOCDT010000029.1 Salmonella enterica strain PNUSAS392968 SAMN37873919-rid19896223.guided.22, whole genome shotgun sequence	2691..3965	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOCDT010000011.1 Salmonella enterica strain PNUSAS392968 SAMN37873919-rid19896223.denovo.13, whole genome shotgun sequence	31173..31646	Trimethoprim	X00926	dfrA1	100	474/474	ABOCDT010000029.1 Salmonella enterica strain PNUSAS392968 SAMN37873919-rid19896223.guided.22, whole genome shotgun sequence	1060..1533	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOCDT010000011.1 Salmonella enterica strain PNUSAS392968 SAMN37873919-rid19896223.denovo.13, whole genome shotgun sequence	4434..4684																																																						avrA	ABOCDT010000003.1	553473..554342	99.77	870	0						
GCA_032853405.1_PDT001946848.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCDV010000001.1 Salmonella enterica strain PNUSAS392971 SAMN37873916-rid19896203.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCDV010000025.1 Salmonella enterica strain PNUSAS392971 SAMN37873916-rid19896203.guided.19, whole genome shotgun sequence	5342..5779	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCDV010000012.1 Salmonella enterica strain PNUSAS392971 SAMN37873916-rid19896203.denovo.13, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABOCDV010000016.1 Salmonella enterica strain PNUSAS392971 SAMN37873916-rid19896203.denovo.18, whole genome shotgun sequence	3150..3411																																																avrA	ABOCDV010000002.1	553636..554505	99.54	870	0						
GCA_032853425.1_PDT001946849.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII,IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCDU010000001.1 Salmonella enterica strain PNUSAS392969 SAMN37873918-rid19896213.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCDU010000028.1 Salmonella enterica strain PNUSAS392969 SAMN37873918-rid19896213.guided.17, whole genome shotgun sequence	7420..7857	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCDU010000012.1 Salmonella enterica strain PNUSAS392969 SAMN37873918-rid19896213.denovo.12, whole genome shotgun sequence	36605..37247	enterobacteriales	IncFII	99.62	261 / 261	ABOCDU010000011.1 Salmonella enterica strain PNUSAS392969 SAMN37873918-rid19896213.denovo.11, whole genome shotgun sequence	63793..64053		enterobacteriales	IncFII(S)	100	262 / 262	ABOCDU010000017.1 Salmonella enterica strain PNUSAS392969 SAMN37873918-rid19896213.denovo.20, whole genome shotgun sequence	3372..3633																																									avrA	ABOCDU010000002.1	553636..554505	99.54	870	0						
GCA_032853445.1_PDT001946847.1_genomic.fna	Salmonella_enterica	0.521	490.178 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCDW010000001.1 Salmonella enterica strain PNUSAS392970 SAMN37873917-rid19896193.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCDW010000028.1 Salmonella enterica strain PNUSAS392970 SAMN37873917-rid19896193.guided.21, whole genome shotgun sequence	3426..3863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCDW010000013.1 Salmonella enterica strain PNUSAS392970 SAMN37873917-rid19896193.denovo.14, whole genome shotgun sequence	40534..41176	enterobacteriales	IncFII(S)	100	262 / 262	ABOCDW010000016.1 Salmonella enterica strain PNUSAS392970 SAMN37873917-rid19896193.denovo.18, whole genome shotgun sequence	3388..3649																																																avrA	ABOCDW010000002.1	585349..586218	99.54	870	0						
GCA_032853465.1_PDT001946846.1_genomic.fna	Salmonella_enterica	0.5222	496.649 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCDX010000001.1 Salmonella enterica strain PNUSAS393015 SAMN37873912-rid19896183.denovo.01, whole genome shotgun sequence	790282..790719	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCDX010000024.1 Salmonella enterica strain PNUSAS393015 SAMN37873912-rid19896183.guided.17, whole genome shotgun sequence	3254..3691	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCDX010000002.1	157478..158347	98.966	870	0						
GCA_032853485.1_PDT001946845.1_genomic.fna	Salmonella_enterica	0.5191	378.113 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	1	IncL	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCDZ010000002.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.denovo.02, whole genome shotgun sequence	195858..196295	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCDZ010000018.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.denovo.19, whole genome shotgun sequence	40891..41727	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOCDZ010000018.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.denovo.19, whole genome shotgun sequence	41727..42529	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOCDZ010000018.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.denovo.19, whole genome shotgun sequence	41727..42530	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOCDZ010000018.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.denovo.19, whole genome shotgun sequence	41727..42530	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOCDZ010000018.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.denovo.19, whole genome shotgun sequence	41727..42530	Streptomycin	AF321550	aac(6')-Iaa	98.63	438/438	ABOCDZ010000033.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.guided.22, whole genome shotgun sequence	11914..12351	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCDZ010000034.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.guided.25, whole genome shotgun sequence	684..1520	Streptomycin	M28829	aph(3'')-Ib	100	684/804	ABOCDZ010000034.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.guided.25, whole genome shotgun sequence	1..684	Streptomycin	AF024602	aph(3'')-Ib	100	684/804	ABOCDZ010000034.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.guided.25, whole genome shotgun sequence	1..684	Streptomycin	AF321550	aph(3'')-Ib	100	803/804	ABOCDZ010000036.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.guided.32, whole genome shotgun sequence	220..1022	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOCDZ010000036.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.guided.32, whole genome shotgun sequence	219..1022	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOCDZ010000036.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.guided.32, whole genome shotgun sequence	219..1022	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOCDZ010000036.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.guided.32, whole genome shotgun sequence	219..1022	Streptomycin	AF321550	aph(3'')-Ib	99.88	803/804	ABOCDZ010000037.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.guided.33, whole genome shotgun sequence	220..1022	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	ABOCDZ010000037.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.guided.33, whole genome shotgun sequence	219..1022	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	ABOCDZ010000037.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.guided.33, whole genome shotgun sequence	219..1022	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	ABOCDZ010000037.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.guided.33, whole genome shotgun sequence	219..1022	Streptomycin	AF321550	tet(B)	100	1206/1206	ABOCDZ010000018.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.denovo.19, whole genome shotgun sequence	4077..5282	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOCDZ010000035.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.guided.26, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncL	97.14	664 / 661	ABOCDZ010000016.1 Salmonella enterica strain PNUSAS393016 SAMN37873911-rid19896173.denovo.17, whole genome shotgun sequence	16150..16812																																																						avrA	ABOCDZ010000011.1	140470..141338	99.195	870	0						
GCA_032853505.1_PDT001946844.1_genomic.fna	Salmonella_enterica	0.5217	377.051 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCDY010000004.1 Salmonella enterica strain PNUSAS393018 SAMN37873909-rid19896163.denovo.04, whole genome shotgun sequence	68378..68815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCDY010000043.1 Salmonella enterica strain PNUSAS393018 SAMN37873909-rid19896163.guided.31, whole genome shotgun sequence	82..519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOCDY010000015.1 Salmonella enterica strain PNUSAS393018 SAMN37873909-rid19896163.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOCDY010000015.1 Salmonella enterica strain PNUSAS393018 SAMN37873909-rid19896163.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABOCDY010000001.1	445865..446733	100	869	0						
GCA_032853525.1_PDT001946843.1_genomic.fna	Salmonella_enterica	0.5226	397.894 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCEA010000001.1 Salmonella enterica strain PNUSAS393014 SAMN37873913-rid19896153.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOCEA010000032.1 Salmonella enterica strain PNUSAS393014 SAMN37873913-rid19896153.guided.23, whole genome shotgun sequence	12768..13205	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCEA010000002.1	149828..150697	99.655	870	0						
GCA_032853545.1_PDT001946842.1_genomic.fna	Salmonella_enterica	0.5205	504.242 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCEB010000001.1 Salmonella enterica strain PNUSAS393019 SAMN37873908-rid19896143.denovo.01, whole genome shotgun sequence	639483..639920	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCEB010000022.1 Salmonella enterica strain PNUSAS393019 SAMN37873908-rid19896143.guided.10, whole genome shotgun sequence	29499..29936	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCEB010000002.1	535350..536219	99.195	870	0						
GCA_032853565.1_PDT001946840.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCED010000001.1 Salmonella enterica strain PNUSAS393013 SAMN37873914-rid19896123.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCED010000024.1 Salmonella enterica strain PNUSAS393013 SAMN37873914-rid19896123.guided.14, whole genome shotgun sequence	1836..2273	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCED010000012.1 Salmonella enterica strain PNUSAS393013 SAMN37873914-rid19896123.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOCED010000012.1 Salmonella enterica strain PNUSAS393013 SAMN37873914-rid19896123.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABOCED010000002.1	553636..554505	99.54	870	0						
GCA_032853585.1_PDT001946841.1_genomic.fna	Salmonella_enterica	0.5213	518.902 KB	4	aroC_104,dnaN_100,hemD_54,hisD_78,purE_104,sucA_9,thrA_48	292	8:z4,z24:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_104	dnaN	100	100	dnaN_100	hemD	100	100	hemD_54	hisD	100	100	hisD_78	purE	100	100	purE_104	sucA	100	100	sucA_9	thrA	100	100	thrA_48	8	z4,z24	-	Salmonella enterica subspecies enterica (subspecies I)	Albany or Duesseldorf	The predicted serotypes share the same general formula: 8:z4,z24:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCEC010000002.1 Salmonella enterica strain PNUSAS393020 SAMN37873907-rid19896133.denovo.02, whole genome shotgun sequence	483344..483781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCEC010000025.1 Salmonella enterica strain PNUSAS393020 SAMN37873907-rid19896133.guided.17, whole genome shotgun sequence	4803..5240	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCEC010000001.1	167676..168545	99.08	870	0						
GCA_032853605.1_PDT001946839.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCEE010000001.1 Salmonella enterica strain PNUSAS393017 SAMN37873910-rid19896113.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCEE010000024.1 Salmonella enterica strain PNUSAS393017 SAMN37873910-rid19896113.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCEE010000012.1 Salmonella enterica strain PNUSAS393017 SAMN37873910-rid19896113.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOCEE010000016.1 Salmonella enterica strain PNUSAS393017 SAMN37873910-rid19896113.denovo.19, whole genome shotgun sequence	3404..3665																																																avrA	ABOCEE010000002.1	553636..554505	99.54	870	0						
GCA_032853625.1_PDT001946838.1_genomic.fna	Salmonella_enterica	0.5225	367.997 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCEF010000001.1 Salmonella enterica strain PNUSAS392996 SAMN37873878-rid19896103.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOCEF010000033.1 Salmonella enterica strain PNUSAS392996 SAMN37873878-rid19896103.guided.24, whole genome shotgun sequence	8570..9007	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	98.59	142 / 142	ABOCEF010000015.1 Salmonella enterica strain PNUSAS392996 SAMN37873878-rid19896103.denovo.15, whole genome shotgun sequence	69319..69460																																																						avrA	ABOCEF010000002.1	150078..150947	99.655	870	0						
GCA_032853645.1_PDT001946837.1_genomic.fna	Salmonella_enterica	0.5222	263.453 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCEG010000001.1 Salmonella enterica strain PNUSAS392998 SAMN37873874-rid19896093.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOCEG010000036.1 Salmonella enterica strain PNUSAS392998 SAMN37873874-rid19896093.guided.27, whole genome shotgun sequence	7361..7798	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCEG010000002.1	94086..94955	99.655	870	0						
GCA_032853655.1_PDT001946835.1_genomic.fna	Salmonella_enterica	0.514	236.724 KB	7	aroC_364,dnaN_25,hemD_29,hisD_263,purE_48,sucA_178,thrA_371	4438	53:z4,z23,z32:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_364	dnaN	100	100	dnaN_25	hemD	100	100	hemD_29	hisD	100	100	hisD_263	purE	100	100	purE_48	sucA	100	100	sucA_178	thrA	100	100	thrA_371	53	z4,z23,z32	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 53:z4,z23,z32:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032853685.1_PDT001946836.1_genomic.fna	Salmonella_enterica	0.5214	202.464 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOCEH010000002.1 Salmonella enterica strain PNUSAS392999 SAMN37873872-rid19896083.denovo.02, whole genome shotgun sequence	64220..64657	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOCEH010000076.1 Salmonella enterica strain PNUSAS392999 SAMN37873872-rid19896083.guided.50, whole genome shotgun sequence	2550..2987	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABOCEH010000017.1 Salmonella enterica strain PNUSAS392999 SAMN37873872-rid19896083.denovo.17, whole genome shotgun sequence	102867..103509																																																																	
GCA_032853705.1_PDT001946834.1_genomic.fna	Salmonella_enterica	0.5209	341.38 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	ColRNAI,IncFIB(S),IncFII(S),IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCEJ010000003.1 Salmonella enterica strain PNUSAS392995 SAMN37873879-rid19896063.denovo.03, whole genome shotgun sequence	68365..68802	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCEJ010000044.1 Salmonella enterica strain PNUSAS392995 SAMN37873879-rid19896063.guided.23, whole genome shotgun sequence	23764..24201	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.83	109 / 130	ABOCEJ010000031.1 Salmonella enterica strain PNUSAS392995 SAMN37873879-rid19896063.denovo.34, whole genome shotgun sequence	1015..1123	enterobacteriales	IncFIB(S)	100	643 / 643	ABOCEJ010000016.1 Salmonella enterica strain PNUSAS392995 SAMN37873879-rid19896063.denovo.16, whole genome shotgun sequence	48478..49120		enterobacteriales	IncFII(S)	100	262 / 262	ABOCEJ010000016.1 Salmonella enterica strain PNUSAS392995 SAMN37873879-rid19896063.denovo.16, whole genome shotgun sequence	64205..64466		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOCEJ010000023.1 Salmonella enterica strain PNUSAS392995 SAMN37873879-rid19896063.denovo.24, whole genome shotgun sequence	15693..16226																																		avrA	ABOCEJ010000001.1	451694..452562	100	869	0						
GCA_032853725.1_PDT001946832.1_genomic.fna	Salmonella_enterica	0.5216	188.663 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCEL010000001.1 Salmonella enterica strain PNUSAS393001 SAMN37873883-rid19896043.denovo.01, whole genome shotgun sequence	368495..368932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOCEL010000050.1 Salmonella enterica strain PNUSAS393001 SAMN37873883-rid19896043.guided.28, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABOCEL010000016.1 Salmonella enterica strain PNUSAS393001 SAMN37873883-rid19896043.denovo.16, whole genome shotgun sequence	108817..109459																																																																	
GCA_032853745.1_PDT001946831.1_genomic.fna	Salmonella_enterica	0.5219	273.33 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCEK010000003.1 Salmonella enterica strain PNUSAS393002 SAMN37873880-rid19896033.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCEK010000046.1 Salmonella enterica strain PNUSAS393002 SAMN37873880-rid19896033.guided.36, whole genome shotgun sequence	2336..2773	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOCEK010000020.1 Salmonella enterica strain PNUSAS393002 SAMN37873880-rid19896033.denovo.20, whole genome shotgun sequence	44730..45372	enterobacteriales	IncFII(S)	100	262 / 262	ABOCEK010000020.1 Salmonella enterica strain PNUSAS393002 SAMN37873880-rid19896033.denovo.20, whole genome shotgun sequence	29384..29645																																																avrA	ABOCEK010000007.1	94133..95001	100	869	0						
GCA_032853765.1_PDT001946829.1_genomic.fna	Salmonella_enterica	0.5237	425.787 KB	3	aroC_140,dnaN_105,hemD_85,hisD_93,purE_14,sucA_10,thrA_3	440	35:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_85	hisD	100	100	hisD_93	purE	100	100	purE_14	sucA	100	100	sucA_10	thrA	100	100	thrA_3	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCEO010000001.1 Salmonella enterica strain PNUSAS393000 SAMN37873871-rid19896013.denovo.01, whole genome shotgun sequence	612703..613140	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCEO010000024.1 Salmonella enterica strain PNUSAS393000 SAMN37873871-rid19896013.guided.21, whole genome shotgun sequence	4034..4471	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032853785.1_PDT001946830.1_genomic.fna	Salmonella_enterica	0.5213	401.018 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCEM010000001.1 Salmonella enterica strain PNUSAS392994 SAMN37873882-rid19896023.denovo.01, whole genome shotgun sequence	487346..487783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCEM010000028.1 Salmonella enterica strain PNUSAS392994 SAMN37873882-rid19896023.guided.15, whole genome shotgun sequence	39250..39687	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCEM010000019.1 Salmonella enterica strain PNUSAS392994 SAMN37873882-rid19896023.denovo.21, whole genome shotgun sequence	6843..7485	enterobacteriales	IncFII(S)	100	262 / 262	ABOCEM010000021.1 Salmonella enterica strain PNUSAS392994 SAMN37873882-rid19896023.denovo.23, whole genome shotgun sequence	3428..3689																																																avrA	ABOCEM010000002.1	553636..554505	99.54	870	0						
GCA_032853825.1_PDT001946826.1_genomic.fna	Salmonella_enterica	0.5201	656.153 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pSL483	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOCEQ010000001.1 Salmonella enterica strain PNUSAS393006 SAMN37873877-rid19895983.denovo.01, whole genome shotgun sequence	645096..645533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOCEQ010000024.1 Salmonella enterica strain PNUSAS393006 SAMN37873877-rid19895983.guided.17, whole genome shotgun sequence	13912..14349	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pSL483	99.9	995 / 995	ABOCEQ010000012.1 Salmonella enterica strain PNUSAS393006 SAMN37873877-rid19895983.denovo.12, whole genome shotgun sequence	23677..24671																																																						avrA	ABOCEQ010000003.1	561288..562158	99.656	871	0						
GCA_032853845.1_PDT001946825.1_genomic.fna	Salmonella_enterica	0.5219	230.526 KB	8	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOCER010000001.1 Salmonella enterica strain PNUSAS393004 SAMN37873873-rid19895973.denovo.01, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOCER010000045.1 Salmonella enterica strain PNUSAS393004 SAMN37873873-rid19895973.guided.37, whole genome shotgun sequence	752..1189	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOCER010000005.1	98792..99661	99.77	870	0						
GCA_032853865.1_PDT001946824.1_genomic.fna	Salmonella_enterica	0.5218	117 KB	12	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCEU010000009.1 Salmonella enterica strain PNUSAS392954 SAMN37873851-rid19895963.denovo.09, whole genome shotgun sequence	36641..37078	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOCEU010000070.1 Salmonella enterica strain PNUSAS392954 SAMN37873851-rid19895963.guided.55, whole genome shotgun sequence	5388..5825	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABOCEU010000036.1 Salmonella enterica strain PNUSAS392954 SAMN37873851-rid19895963.denovo.36, whole genome shotgun sequence	26921..27180																																																																	
GCA_032853885.1_PDT001946823.1_genomic.fna	Salmonella_enterica	0.5227	388.092 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOCES010000001.1 Salmonella enterica strain PNUSAS392956 SAMN37873849-rid19895953.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOCES010000034.1 Salmonella enterica strain PNUSAS392956 SAMN37873849-rid19895953.guided.21, whole genome shotgun sequence	2742..3179	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCES010000009.1	94166..95034	99.425	870	0						
GCA_032853905.1_PDT001946827.1_genomic.fna	Salmonella_enterica	0.5218	385.4 KB	6	aroC_2,dnaN_59,hemD_23,hisD_64,purE_38,sucA_19,thrA_12	1499	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_59	hemD	100	100	hemD_23	hisD	100	100	hisD_64	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOCEN010000001.1 Salmonella enterica strain PNUSAS393003 SAMN37873876-rid19895993.denovo.01, whole genome shotgun sequence	19218..19655	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOCEN010000038.1 Salmonella enterica strain PNUSAS393003 SAMN37873876-rid19895993.guided.30, whole genome shotgun sequence	3138..3575	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOCEN010000002.1	409109..409979	99.311	871	0						
GCA_032853925.1_PDT001946822.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCET010000001.1 Salmonella enterica strain PNUSAS392958 SAMN37873847-rid19895943.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCET010000027.1 Salmonella enterica strain PNUSAS392958 SAMN37873847-rid19895943.guided.19, whole genome shotgun sequence	3037..3474	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCET010000012.1 Salmonella enterica strain PNUSAS392958 SAMN37873847-rid19895943.denovo.12, whole genome shotgun sequence	40534..41176	enterobacteriales	IncFII(S)	100	262 / 262	ABOCET010000016.1 Salmonella enterica strain PNUSAS392958 SAMN37873847-rid19895943.denovo.18, whole genome shotgun sequence	3392..3653																																																avrA	ABOCET010000002.1	553636..554505	99.54	870	0						
GCA_032853945.1_PDT001946821.1_genomic.fna	Salmonella_enterica	0.5226	390.651 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOCEV010000001.1 Salmonella enterica strain PNUSAS392960 SAMN37873845-rid19895933.denovo.01, whole genome shotgun sequence	1374582..1375019	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCEV010000018.1 Salmonella enterica strain PNUSAS392960 SAMN37873845-rid19895933.denovo.20, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOCEV010000018.1 Salmonella enterica strain PNUSAS392960 SAMN37873845-rid19895933.denovo.20, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOCEV010000018.1 Salmonella enterica strain PNUSAS392960 SAMN37873845-rid19895933.denovo.20, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOCEV010000018.1 Salmonella enterica strain PNUSAS392960 SAMN37873845-rid19895933.denovo.20, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOCEV010000018.1 Salmonella enterica strain PNUSAS392960 SAMN37873845-rid19895933.denovo.20, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOCEV010000032.1 Salmonella enterica strain PNUSAS392960 SAMN37873845-rid19895933.guided.19, whole genome shotgun sequence	479..916	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCEV010000036.1 Salmonella enterica strain PNUSAS392960 SAMN37873845-rid19895933.guided.28, whole genome shotgun sequence	1171..2007	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOCEV010000036.1 Salmonella enterica strain PNUSAS392960 SAMN37873845-rid19895933.guided.28, whole genome shotgun sequence	369..1171	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOCEV010000036.1 Salmonella enterica strain PNUSAS392960 SAMN37873845-rid19895933.guided.28, whole genome shotgun sequence	368..1171	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOCEV010000036.1 Salmonella enterica strain PNUSAS392960 SAMN37873845-rid19895933.guided.28, whole genome shotgun sequence	368..1171	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOCEV010000036.1 Salmonella enterica strain PNUSAS392960 SAMN37873845-rid19895933.guided.28, whole genome shotgun sequence	368..1171	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOCEV010000019.1 Salmonella enterica strain PNUSAS392960 SAMN37873845-rid19895933.denovo.21, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCEV010000034.1 Salmonella enterica strain PNUSAS392960 SAMN37873845-rid19895933.guided.26, whole genome shotgun sequence	575..1774	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOCEV010000035.1 Salmonella enterica strain PNUSAS392960 SAMN37873845-rid19895933.guided.27, whole genome shotgun sequence	575..1774	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABOCEV010000022.1 Salmonella enterica strain PNUSAS392960 SAMN37873845-rid19895933.denovo.25, whole genome shotgun sequence	805..997																																																						avrA	ABOCEV010000007.1	140341..141210	99.655	870	0						
GCA_032853955.1_PDT001946820.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCEW010000001.1 Salmonella enterica strain PNUSAS392957 SAMN37873848-rid19895923.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCEW010000025.1 Salmonella enterica strain PNUSAS392957 SAMN37873848-rid19895923.guided.18, whole genome shotgun sequence	706..1143	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCEW010000012.1 Salmonella enterica strain PNUSAS392957 SAMN37873848-rid19895923.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOCEW010000012.1 Salmonella enterica strain PNUSAS392957 SAMN37873848-rid19895923.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABOCEW010000002.1	553642..554511	99.54	870	0						
GCA_032853965.1_PDT001946819.1_genomic.fna	Salmonella_enterica	0.5209	677.002 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCEX010000001.1 Salmonella enterica strain PNUSAS392955 SAMN37873850-rid19895913.denovo.01, whole genome shotgun sequence	477591..478028	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCEX010000026.1 Salmonella enterica strain PNUSAS392955 SAMN37873850-rid19895913.guided.17, whole genome shotgun sequence	32364..32801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABOCEX010000013.1 Salmonella enterica strain PNUSAS392955 SAMN37873850-rid19895913.denovo.13, whole genome shotgun sequence	51983..52244																																																						avrA	ABOCEX010000002.1	503453..504322	99.195	870	0						
GCA_032854005.1_PDT001946818.1_genomic.fna	Salmonella_enterica	0.5208	707.807 KB	2	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCEY010000001.1 Salmonella enterica strain PNUSAS392959 SAMN37873846-rid19895903.denovo.01, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCEY010000023.1 Salmonella enterica strain PNUSAS392959 SAMN37873846-rid19895903.guided.14, whole genome shotgun sequence	9924..10361	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032854025.1_PDT001946817.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCEZ010000001.1 Salmonella enterica strain PNUSAS392962 SAMN37873843-rid19895893.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCEZ010000021.1 Salmonella enterica strain PNUSAS392962 SAMN37873843-rid19895893.guided.15, whole genome shotgun sequence	6440..6877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCEZ010000011.1 Salmonella enterica strain PNUSAS392962 SAMN37873843-rid19895893.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOCEZ010000011.1 Salmonella enterica strain PNUSAS392962 SAMN37873843-rid19895893.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABOCEZ010000002.1	553636..554505	99.54	870	0						
GCA_032854065.1_PDT001946814.1_genomic.fna	Salmonella_enterica	0.5201	430.193 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCFC010000001.1 Salmonella enterica strain PNUSAS392966 SAMN37873839-rid19895863.denovo.01, whole genome shotgun sequence	572283..572720	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCFC010000030.1 Salmonella enterica strain PNUSAS392966 SAMN37873839-rid19895863.guided.21, whole genome shotgun sequence	7847..8284	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCFC010000011.1	140470..141338	99.195	870	0						
GCA_032854085.1_PDT001946816.1_genomic.fna	Salmonella_enterica	0.5215	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCFA010000001.1 Salmonella enterica strain PNUSAS392961 SAMN37873844-rid19895883.denovo.01, whole genome shotgun sequence	774365..774802	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCFA010000025.1 Salmonella enterica strain PNUSAS392961 SAMN37873844-rid19895883.guided.21, whole genome shotgun sequence	1802..2239	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCFA010000012.1 Salmonella enterica strain PNUSAS392961 SAMN37873844-rid19895883.denovo.12, whole genome shotgun sequence	40531..41173	enterobacteriales	IncFII(S)	100	262 / 262	ABOCFA010000016.1 Salmonella enterica strain PNUSAS392961 SAMN37873844-rid19895883.denovo.17, whole genome shotgun sequence	3372..3633																																																avrA	ABOCFA010000002.1	553636..554505	99.54	870	0						
GCA_032854105.1_PDT001946815.1_genomic.fna	Salmonella_enterica	0.5211	489.889 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCFB010000001.1 Salmonella enterica strain PNUSAS392963 SAMN37873842-rid19895873.denovo.01, whole genome shotgun sequence	162457..162894	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCFB010000027.1 Salmonella enterica strain PNUSAS392963 SAMN37873842-rid19895873.guided.21, whole genome shotgun sequence	744..1181	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCFB010000015.1 Salmonella enterica strain PNUSAS392963 SAMN37873842-rid19895873.denovo.16, whole genome shotgun sequence	1072..1714	enterobacteriales	IncFII(S)	100	262 / 262	ABOCFB010000016.1 Salmonella enterica strain PNUSAS392963 SAMN37873842-rid19895873.denovo.17, whole genome shotgun sequence	3352..3613																																																avrA	ABOCFB010000002.1	585418..586287	99.54	870	0						
GCA_032854125.1_PDT001946813.1_genomic.fna	Salmonella_enterica	0.5216	257.839 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCFE010000001.1 Salmonella enterica strain PNUSAS393005 SAMN37873837-rid19895853.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCFE010000048.1 Salmonella enterica strain PNUSAS393005 SAMN37873837-rid19895853.guided.26, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOCFE010000018.1 Salmonella enterica strain PNUSAS393005 SAMN37873837-rid19895853.denovo.18, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABOCFE010000018.1 Salmonella enterica strain PNUSAS393005 SAMN37873837-rid19895853.denovo.18, whole genome shotgun sequence	22559..22820																																																avrA	ABOCFE010000007.1	97953..98821	100	869	0						
GCA_032854145.1_PDT001946812.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCFD010000001.1 Salmonella enterica strain PNUSAS392965 SAMN37873841-rid19895843.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCFD010000024.1 Salmonella enterica strain PNUSAS392965 SAMN37873841-rid19895843.guided.17, whole genome shotgun sequence	4085..4522	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCFD010000011.1 Salmonella enterica strain PNUSAS392965 SAMN37873841-rid19895843.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOCFD010000014.1 Salmonella enterica strain PNUSAS392965 SAMN37873841-rid19895843.denovo.16, whole genome shotgun sequence	3334..3595																																																avrA	ABOCFD010000002.1	553636..554505	99.54	870	0						
GCA_032854165.1_PDT001946811.1_genomic.fna	Salmonella_enterica	0.5196	414.435 KB	4	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	5	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOCFF010000001.1 Salmonella enterica strain PNUSAS392964 SAMN37873840-rid19895833.denovo.01, whole genome shotgun sequence	806901..807338	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOCFF010000019.1 Salmonella enterica strain PNUSAS392964 SAMN37873840-rid19895833.denovo.19, whole genome shotgun sequence	52476..53255	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABOCFF010000043.1 Salmonella enterica strain PNUSAS392964 SAMN37873840-rid19895833.guided.23, whole genome shotgun sequence	21699..22478	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	98.17	438/438	ABOCFF010000047.1 Salmonella enterica strain PNUSAS392964 SAMN37873840-rid19895833.guided.35, whole genome shotgun sequence	591..1028	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOCFF010000002.1 Salmonella enterica strain PNUSAS392964 SAMN37873840-rid19895833.denovo.02, whole genome shotgun sequence	311934..312356	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOCFF010000045.1 Salmonella enterica strain PNUSAS392964 SAMN37873840-rid19895833.guided.28, whole genome shotgun sequence	10222..10644	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABOCFF010000019.1 Salmonella enterica strain PNUSAS392964 SAMN37873840-rid19895833.denovo.19, whole genome shotgun sequence	53759..54598	Sulfamethoxazole	U12338	sul1	100	840/840	ABOCFF010000043.1 Salmonella enterica strain PNUSAS392964 SAMN37873840-rid19895833.guided.23, whole genome shotgun sequence	22982..23821	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOCFF010000025.1 Salmonella enterica strain PNUSAS392964 SAMN37873840-rid19895833.denovo.30, whole genome shotgun sequence	6632..7831	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCFF010000046.1 Salmonella enterica strain PNUSAS392964 SAMN37873840-rid19895833.guided.29, whole genome shotgun sequence	6673..7872	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOCFF010000029.1 Salmonella enterica strain PNUSAS392964 SAMN37873840-rid19895833.denovo.34, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	91.89	111 / 114	ABOCFF010000028.1 Salmonella enterica strain PNUSAS392964 SAMN37873840-rid19895833.denovo.33, whole genome shotgun sequence	3044..3153																																																avrA	ABOCFF010000004.1	184376..185245	99.655	870	0						
GCA_032854185.1_PDT001946810.1_genomic.fna	Salmonella_enterica	0.5223	714.64 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	2	Col156,ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOCFG010000001.1 Salmonella enterica strain PNUSAS392967 SAMN37873838-rid19895823.denovo.01, whole genome shotgun sequence	1374582..1375019	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCFG010000017.1 Salmonella enterica strain PNUSAS392967 SAMN37873838-rid19895823.denovo.21, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOCFG010000017.1 Salmonella enterica strain PNUSAS392967 SAMN37873838-rid19895823.denovo.21, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOCFG010000017.1 Salmonella enterica strain PNUSAS392967 SAMN37873838-rid19895823.denovo.21, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOCFG010000017.1 Salmonella enterica strain PNUSAS392967 SAMN37873838-rid19895823.denovo.21, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOCFG010000017.1 Salmonella enterica strain PNUSAS392967 SAMN37873838-rid19895823.denovo.21, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOCFG010000033.1 Salmonella enterica strain PNUSAS392967 SAMN37873838-rid19895823.guided.18, whole genome shotgun sequence	2062..2499	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCFG010000034.1 Salmonella enterica strain PNUSAS392967 SAMN37873838-rid19895823.guided.20, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOCFG010000034.1 Salmonella enterica strain PNUSAS392967 SAMN37873838-rid19895823.guided.20, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOCFG010000034.1 Salmonella enterica strain PNUSAS392967 SAMN37873838-rid19895823.guided.20, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOCFG010000034.1 Salmonella enterica strain PNUSAS392967 SAMN37873838-rid19895823.guided.20, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOCFG010000034.1 Salmonella enterica strain PNUSAS392967 SAMN37873838-rid19895823.guided.20, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOCFG010000018.1 Salmonella enterica strain PNUSAS392967 SAMN37873838-rid19895823.denovo.22, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCFG010000035.1 Salmonella enterica strain PNUSAS392967 SAMN37873838-rid19895823.guided.28, whole genome shotgun sequence	108..1307	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	ABOCFG010000020.1 Salmonella enterica strain PNUSAS392967 SAMN37873838-rid19895823.denovo.24, whole genome shotgun sequence	967..1118	enterobacteriales	ColpVC	98.96	193 / 193	ABOCFG010000023.1 Salmonella enterica strain PNUSAS392967 SAMN37873838-rid19895823.denovo.27, whole genome shotgun sequence	805..997																																																avrA	ABOCFG010000003.1	573274..574143	99.655	870	0						
GCA_032854205.1_PDT001946809.1_genomic.fna	Salmonella_enterica	0.5215	521.579 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOCFH010000001.1 Salmonella enterica strain PNUSAS392938 SAMN37873807-rid19895813.denovo.01, whole genome shotgun sequence	790765..791202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOCFH010000028.1 Salmonella enterica strain PNUSAS392938 SAMN37873807-rid19895813.guided.23, whole genome shotgun sequence	2074..2511	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOCFH010000017.1 Salmonella enterica strain PNUSAS392938 SAMN37873807-rid19895813.denovo.19, whole genome shotgun sequence	239..369	enterobacteriales	Col440I	94.59	111 / 114	ABOCFH010000019.1 Salmonella enterica strain PNUSAS392938 SAMN37873807-rid19895813.denovo.21, whole genome shotgun sequence	3175..3285																																																avrA	ABOCFH010000007.1	175930..176799	99.425	870	0						
GCA_032854225.1_PDT001946808.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCFI010000001.1 Salmonella enterica strain PNUSAS392944 SAMN37873801-rid19895803.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCFI010000025.1 Salmonella enterica strain PNUSAS392944 SAMN37873801-rid19895803.guided.20, whole genome shotgun sequence	950..1387	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCFI010000011.1 Salmonella enterica strain PNUSAS392944 SAMN37873801-rid19895803.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOCFI010000015.1 Salmonella enterica strain PNUSAS392944 SAMN37873801-rid19895803.denovo.17, whole genome shotgun sequence	3395..3656																																																avrA	ABOCFI010000002.1	553636..554505	99.54	870	0						
GCA_032854245.1_PDT001946806.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCFK010000001.1 Salmonella enterica strain PNUSAS392943 SAMN37873802-rid19895783.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCFK010000025.1 Salmonella enterica strain PNUSAS392943 SAMN37873802-rid19895783.guided.17, whole genome shotgun sequence	54..491	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCFK010000012.1 Salmonella enterica strain PNUSAS392943 SAMN37873802-rid19895783.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOCFK010000016.1 Salmonella enterica strain PNUSAS392943 SAMN37873802-rid19895783.denovo.19, whole genome shotgun sequence	3403..3664																																																avrA	ABOCFK010000002.1	553636..554505	99.54	870	0						
GCA_032854265.1_PDT001946807.1_genomic.fna	Salmonella_enterica	0.522	346.887 KB	6	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	8	aac(6')-Iaa,aadA16,aac(6')-Ib-cr,aac(6')-Iaa,aac(6')-Ib-cr,aac(6')-Ib-cr,aadA16,qnrB6,qnrB6,ARR-3,ARR-3,ARR-3,sul1,sul1,tet(A),tet(A),dfrA27,dfrA27	0		1	IncN	aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOCFJ010000001.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.denovo.01, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aadA16	99.65	846/846	ABOCFJ010000023.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.denovo.26, whole genome shotgun sequence	78..923	Spectinomycin, Streptomycin	EU675686	aac(6')-Ib-cr	100	600/600	ABOCFJ010000023.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.denovo.26, whole genome shotgun sequence	2259..2858	Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin, Ciprofloxacin	DQ303918	aac(6')-Iaa	98.4	438/438	ABOCFJ010000038.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.guided.25, whole genome shotgun sequence	3580..4017	Amikacin, Tobramycin	NC_003197	aac(6')-Ib-cr	99.83	600/600	ABOCFJ010000042.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.guided.35, whole genome shotgun sequence	29..628	Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin, Ciprofloxacin	DQ303918	aac(6')-Ib-cr	100	600/600	ABOCFJ010000043.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.guided.36, whole genome shotgun sequence	29..628	Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin, Ciprofloxacin	DQ303918	aadA16	99.65	846/846	ABOCFJ010000044.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.guided.39, whole genome shotgun sequence	29..874	Spectinomycin, Streptomycin	EU675686	qnrB6	100	645/645	ABOCFJ010000026.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.denovo.29, whole genome shotgun sequence	192..836	Ciprofloxacin	EF523819	qnrB6	100	645/645	ABOCFJ010000040.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.guided.33, whole genome shotgun sequence	233..877	Ciprofloxacin	EF523819	ARR-3	100	453/453	ABOCFJ010000023.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.denovo.26, whole genome shotgun sequence	1710..2162	Rifampicin	JF806499	ARR-3	100	453/453	ABOCFJ010000042.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.guided.35, whole genome shotgun sequence	725..1177	Rifampicin	JF806499	ARR-3	100	453/453	ABOCFJ010000043.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.guided.36, whole genome shotgun sequence	725..1177	Rifampicin	JF806499	sul1	100	840/840	ABOCFJ010000029.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.denovo.37, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOCFJ010000041.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.guided.34, whole genome shotgun sequence	380..1219	Sulfamethoxazole	U12338	tet(A)	99.75	1200/1200	ABOCFJ010000020.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.denovo.20, whole genome shotgun sequence	9478..10677	Doxycycline, Tetracycline	AY196695	tet(A)	99.75	1200/1200	ABOCFJ010000039.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.guided.30, whole genome shotgun sequence	989..2188	Doxycycline, Tetracycline	AY196695	dfrA27	100	474/474	ABOCFJ010000023.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.denovo.26, whole genome shotgun sequence	1104..1577	Trimethoprim	FJ459817	dfrA27	100	474/474	ABOCFJ010000045.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.guided.41, whole genome shotgun sequence	110..583	Trimethoprim	FJ459817																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncN	99.81	514 / 514	ABOCFJ010000022.1 Salmonella enterica strain PNUSAS392945 SAMN37873800-rid19895793.denovo.24, whole genome shotgun sequence	412..925																																																						avrA	ABOCFJ010000006.1	180003..180871	99.655	870	0						
GCA_032854285.1_PDT001946805.1_genomic.fna	Salmonella_enterica	0.5217	731.649 KB	3	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCFL010000002.1 Salmonella enterica strain PNUSAS392946 SAMN37873799-rid19895773.denovo.02, whole genome shotgun sequence	624584..625021	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCFL010000021.1 Salmonella enterica strain PNUSAS392946 SAMN37873799-rid19895773.guided.14, whole genome shotgun sequence	4483..4920	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOCFL010000014.1 Salmonella enterica strain PNUSAS392946 SAMN37873799-rid19895773.denovo.17, whole genome shotgun sequence	186..316																																																																	
GCA_032854305.1_PDT001946804.1_genomic.fna	Salmonella_enterica	0.5206	291.858 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,qnrS1,qnrS1,tet(M),tet(A),tet(M),tet(A)	0		3	Col440I,ColRNAI,IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCFM010000001.1 Salmonella enterica strain PNUSAS392936 SAMN37873809-rid19895763.denovo.01, whole genome shotgun sequence	381656..382093	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCFM010000048.1 Salmonella enterica strain PNUSAS392936 SAMN37873809-rid19895763.guided.38, whole genome shotgun sequence	408..845	Amikacin, Tobramycin	NC_003197	qnrS1	100	657/657	ABOCFM010000032.1 Salmonella enterica strain PNUSAS392936 SAMN37873809-rid19895763.denovo.35, whole genome shotgun sequence	129..785	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOCFM010000046.1 Salmonella enterica strain PNUSAS392936 SAMN37873809-rid19895763.guided.36, whole genome shotgun sequence	2058..2714	Ciprofloxacin	AB187515	tet(M)	96.15	1920/1920	ABOCFM010000027.1 Salmonella enterica strain PNUSAS392936 SAMN37873809-rid19895763.denovo.29, whole genome shotgun sequence	844..2763	Doxycycline, Tetracycline, Minocycline	X04388	tet(A)	99.92	1200/1200	ABOCFM010000029.1 Salmonella enterica strain PNUSAS392936 SAMN37873809-rid19895763.denovo.32, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	ABOCFM010000045.1 Salmonella enterica strain PNUSAS392936 SAMN37873809-rid19895763.guided.31, whole genome shotgun sequence	885..2804	Doxycycline, Tetracycline, Minocycline	X04388	tet(A)	99.92	1200/1200	ABOCFM010000047.1 Salmonella enterica strain PNUSAS392936 SAMN37873809-rid19895763.guided.37, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col440I	91.89	111 / 114	ABOCFM010000030.1 Salmonella enterica strain PNUSAS392936 SAMN37873809-rid19895763.denovo.33, whole genome shotgun sequence	3044..3153	enterobacteriales	ColRNAI	90.83	109 / 130	ABOCFM010000028.1 Salmonella enterica strain PNUSAS392936 SAMN37873809-rid19895763.denovo.30, whole genome shotgun sequence	1011..1119		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOCFM010000015.1 Salmonella enterica strain PNUSAS392936 SAMN37873809-rid19895763.denovo.15, whole genome shotgun sequence	70162..70303																																									avrA	ABOCFM010000002.1	505869..506738	99.885	870	0						
GCA_032854325.1_PDT001946803.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCFN010000001.1 Salmonella enterica strain PNUSAS392949 SAMN37873796-rid19895753.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCFN010000026.1 Salmonella enterica strain PNUSAS392949 SAMN37873796-rid19895753.guided.18, whole genome shotgun sequence	4162..4599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCFN010000012.1 Salmonella enterica strain PNUSAS392949 SAMN37873796-rid19895753.denovo.12, whole genome shotgun sequence	40533..41175	enterobacteriales	IncFII(S)	100	262 / 262	ABOCFN010000016.1 Salmonella enterica strain PNUSAS392949 SAMN37873796-rid19895753.denovo.19, whole genome shotgun sequence	3392..3653																																																avrA	ABOCFN010000002.1	553642..554511	99.54	870	0						
GCA_032854345.1_PDT001946802.1_genomic.fna	Salmonella_enterica	0.5217	298.228 KB	4	aroC_186,dnaN_35,hemD_78,hisD_510,purE_39,sucA_182,thrA_435	1621	13:f,g:-	7	aac(6')-Iaa,ant(2'')-Ia,ant(2'')-Ia,aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncQ1,IncQ1,IncR	aroC	100	100	aroC_186	dnaN	100	100	dnaN_35	hemD	100	100	hemD_78	hisD	100	100	hisD_510	purE	100	100	purE_39	sucA	100	100	sucA_182	thrA	100	100	thrA_435	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOCFO010000001.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.denovo.01, whole genome shotgun sequence	475685..476122	Amikacin, Tobramycin	NC_003197	ant(2'')-Ia	100	534/534	ABOCFO010000025.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.denovo.27, whole genome shotgun sequence	4703..5236	Gentamicin, Tobramycin	X04555	ant(2'')-Ia	100	534/534	ABOCFO010000040.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.guided.26, whole genome shotgun sequence	5759..6292	Gentamicin, Tobramycin	X04555	aac(6')-Iaa	98.86	438/438	ABOCFO010000047.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.guided.43, whole genome shotgun sequence	610..1047	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCFO010000048.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.guided.44, whole genome shotgun sequence	610..1047	Amikacin, Tobramycin	NC_003197	mph(A)	100	906/906	ABOCFO010000022.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.denovo.22, whole genome shotgun sequence	6185..7090	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	ABOCFO010000041.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.guided.29, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOCFO010000028.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.denovo.35, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABOCFO010000043.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.guided.32, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOCFO010000044.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.guided.33, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOCFO010000022.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.denovo.22, whole genome shotgun sequence	12401..13240	Sulfamethoxazole	U12338	sul1	100	840/840	ABOCFO010000042.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.guided.31, whole genome shotgun sequence	2889..3728	Sulfamethoxazole	U12338	tet(A)	100	1240/1275	ABOCFO010000022.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.denovo.22, whole genome shotgun sequence	15916..17155	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOCFO010000046.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.guided.39, whole genome shotgun sequence	1533..2807	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOCFO010000022.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.denovo.22, whole genome shotgun sequence	14285..14758	Trimethoprim	X00926	dfrA1	100	474/474	ABOCFO010000042.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.guided.31, whole genome shotgun sequence	1371..1844	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncQ1	100	796 / 796	ABOCFO010000025.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.denovo.27, whole genome shotgun sequence	3597..4392	enterobacteriales	IncQ1	100	796 / 796	ABOCFO010000040.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.guided.26, whole genome shotgun sequence	6603..7398		enterobacteriales	IncR	100	251 / 251	ABOCFO010000022.1 Salmonella enterica strain PNUSAS392941 SAMN37873804-rid19895743.denovo.22, whole genome shotgun sequence	610..860																																									avrA	ABOCFO010000004.1	148091..148960	99.54	870	0						
GCA_032854365.1_PDT001946800.1_genomic.fna	Salmonella_enterica	0.5205	276.314 KB	6	aroC_18,dnaN_14,hemD_12,hisD_9,purE_5,sucA_18,thrA_21	36	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_14	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_18	thrA	100	100	thrA_21	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCFQ010000001.1 Salmonella enterica strain PNUSAS392951 SAMN37873794-rid19895723.denovo.01, whole genome shotgun sequence	287868..288305	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCFQ010000047.1 Salmonella enterica strain PNUSAS392951 SAMN37873794-rid19895723.guided.32, whole genome shotgun sequence	2308..2745	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOCFQ010000002.1	174490..175359	99.885	870	0						
GCA_032854385.1_PDT001946801.1_genomic.fna	Salmonella_enterica	0.5205	390.872 KB	5	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOCFP010000001.1 Salmonella enterica strain PNUSAS392942 SAMN37873803-rid19895733.denovo.01, whole genome shotgun sequence	346944..347381	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOCFP010000034.1 Salmonella enterica strain PNUSAS392942 SAMN37873803-rid19895733.guided.23, whole genome shotgun sequence	3710..4147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCFP010000008.1	150860..151729	99.54	870	0						
GCA_032854405.1_PDT001946799.1_genomic.fna	Salmonella_enterica	0.5213	489.681 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCFR010000001.1 Salmonella enterica strain PNUSAS392939 SAMN37873806-rid19895713.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCFR010000025.1 Salmonella enterica strain PNUSAS392939 SAMN37873806-rid19895713.guided.20, whole genome shotgun sequence	207..644	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCFR010000013.1 Salmonella enterica strain PNUSAS392939 SAMN37873806-rid19895713.denovo.13, whole genome shotgun sequence	40541..41183	enterobacteriales	IncFII(S)	100	262 / 262	ABOCFR010000016.1 Salmonella enterica strain PNUSAS392939 SAMN37873806-rid19895713.denovo.16, whole genome shotgun sequence	3404..3665																																																avrA	ABOCFR010000002.1	553082..553951	99.54	870	0						
GCA_032854425.1_PDT001946798.1_genomic.fna	Salmonella_enterica	0.5212	282.835 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	Col440I	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCFS010000001.1 Salmonella enterica strain PNUSAS392940 SAMN37873805-rid19895703.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCFS010000036.1 Salmonella enterica strain PNUSAS392940 SAMN37873805-rid19895703.denovo.40, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOCFS010000036.1 Salmonella enterica strain PNUSAS392940 SAMN37873805-rid19895703.denovo.40, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOCFS010000053.1 Salmonella enterica strain PNUSAS392940 SAMN37873805-rid19895703.guided.39, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOCFS010000053.1 Salmonella enterica strain PNUSAS392940 SAMN37873805-rid19895703.guided.39, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOCFS010000056.1 Salmonella enterica strain PNUSAS392940 SAMN37873805-rid19895703.guided.53, whole genome shotgun sequence	105..542	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOCFS010000040.1 Salmonella enterica strain PNUSAS392940 SAMN37873805-rid19895703.denovo.46, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	99.88	861/861	ABOCFS010000054.1 Salmonella enterica strain PNUSAS392940 SAMN37873805-rid19895703.guided.44, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOCFS010000055.1 Salmonella enterica strain PNUSAS392940 SAMN37873805-rid19895703.guided.45, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOCFS010000036.1 Salmonella enterica strain PNUSAS392940 SAMN37873805-rid19895703.denovo.40, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOCFS010000053.1 Salmonella enterica strain PNUSAS392940 SAMN37873805-rid19895703.guided.39, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOCFS010000029.1 Salmonella enterica strain PNUSAS392940 SAMN37873805-rid19895703.denovo.29, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOCFS010000051.1 Salmonella enterica strain PNUSAS392940 SAMN37873805-rid19895703.guided.31, whole genome shotgun sequence	8999..10204	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																	enterobacteriales	Col440I	92.04	113 / 114	ABOCFS010000038.1 Salmonella enterica strain PNUSAS392940 SAMN37873805-rid19895703.denovo.42, whole genome shotgun sequence	335..447																																																						avrA	ABOCFS010000002.1	573781..574650	99.885	870	0						
GCA_032854455.1_PDT001946797.1_genomic.fna	Salmonella_enterica	0.5219	429.84 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1*	26*	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	99.8003992015968	100	thrA_1*	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOCFT010000001.1 Salmonella enterica strain PNUSAS392937 SAMN37873808-rid19895693.denovo.01, whole genome shotgun sequence	835195..835632	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOCFT010000024.1 Salmonella enterica strain PNUSAS392937 SAMN37873808-rid19895693.guided.16, whole genome shotgun sequence	9622..10059	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCFT010000004.1	148520..149389	99.77	870	0						
GCA_032854475.1_PDT001946793.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCFX010000001.1 Salmonella enterica strain PNUSAS392950 SAMN37873795-rid19895653.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCFX010000027.1 Salmonella enterica strain PNUSAS392950 SAMN37873795-rid19895653.guided.19, whole genome shotgun sequence	1258..1695	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCFX010000012.1 Salmonella enterica strain PNUSAS392950 SAMN37873795-rid19895653.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOCFX010000016.1 Salmonella enterica strain PNUSAS392950 SAMN37873795-rid19895653.denovo.18, whole genome shotgun sequence	3436..3697																																																avrA	ABOCFX010000002.1	553636..554505	99.54	870	0						
GCA_032854495.1_PDT001946795.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCFV010000001.1 Salmonella enterica strain PNUSAS392947 SAMN37873798-rid19895673.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCFV010000024.1 Salmonella enterica strain PNUSAS392947 SAMN37873798-rid19895673.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCFV010000012.1 Salmonella enterica strain PNUSAS392947 SAMN37873798-rid19895673.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOCFV010000016.1 Salmonella enterica strain PNUSAS392947 SAMN37873798-rid19895673.denovo.19, whole genome shotgun sequence	3392..3653																																																avrA	ABOCFV010000002.1	553636..554505	99.54	870	0						
GCA_032854515.1_PDT001946794.1_genomic.fna	Salmonella_enterica	0.5214	490.157 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCFW010000001.1 Salmonella enterica strain PNUSAS392948 SAMN37873797-rid19895663.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCFW010000023.1 Salmonella enterica strain PNUSAS392948 SAMN37873797-rid19895663.guided.18, whole genome shotgun sequence	2550..2987	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCFW010000012.1 Salmonella enterica strain PNUSAS392948 SAMN37873797-rid19895663.denovo.12, whole genome shotgun sequence	40536..41178	enterobacteriales	IncFII(S)	100	262 / 262	ABOCFW010000015.1 Salmonella enterica strain PNUSAS392948 SAMN37873797-rid19895663.denovo.17, whole genome shotgun sequence	3394..3655																																																avrA	ABOCFW010000002.1	553678..554547	99.54	870	0						
GCA_032854535.1_PDT001946796.1_genomic.fna	Salmonella_enterica	0.521	508.016 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCFU010000001.1 Salmonella enterica strain PNUSAS392953 SAMN37873792-rid19895683.denovo.01, whole genome shotgun sequence	1308798..1309235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCFU010000023.1 Salmonella enterica strain PNUSAS392953 SAMN37873792-rid19895683.guided.19, whole genome shotgun sequence	1788..2225	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOCFU010000011.1 Salmonella enterica strain PNUSAS392953 SAMN37873792-rid19895683.denovo.11, whole genome shotgun sequence	5790..6323																																																						avrA	ABOCFU010000008.1	150695..151565	99.196	871	0						
GCA_032854555.1_PDT001946791.1_genomic.fna	Salmonella_enterica	0.5221	533.031 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOCGA010000001.1 Salmonella enterica strain PNUSAS392935 SAMN37873789-rid19895633.denovo.01, whole genome shotgun sequence	835211..835648	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOCGA010000025.1 Salmonella enterica strain PNUSAS392935 SAMN37873789-rid19895633.guided.18, whole genome shotgun sequence	1870..2307	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOCGA010000019.1 Salmonella enterica strain PNUSAS392935 SAMN37873789-rid19895633.denovo.23, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOCGA010000026.1 Salmonella enterica strain PNUSAS392935 SAMN37873789-rid19895633.guided.22, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOCGA010000019.1 Salmonella enterica strain PNUSAS392935 SAMN37873789-rid19895633.denovo.23, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOCGA010000026.1 Salmonella enterica strain PNUSAS392935 SAMN37873789-rid19895633.guided.22, whole genome shotgun sequence	2044..2174																																																avrA	ABOCGA010000002.1	563804..564673	99.77	870	0						
GCA_032854575.1_PDT001946792.1_genomic.fna	Salmonella_enterica	0.5221	324.414 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCFY010000001.1 Salmonella enterica strain PNUSAS392952 SAMN37873793-rid19895643.denovo.01, whole genome shotgun sequence	87300..87737	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCFY010000042.1 Salmonella enterica strain PNUSAS392952 SAMN37873793-rid19895643.guided.31, whole genome shotgun sequence	4491..4928	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOCFY010000017.1 Salmonella enterica strain PNUSAS392952 SAMN37873793-rid19895643.denovo.17, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	ABOCFY010000017.1 Salmonella enterica strain PNUSAS392952 SAMN37873793-rid19895643.denovo.17, whole genome shotgun sequence	64139..64400																																																avrA	ABOCFY010000006.1	143228..144097	99.885	870	0						
GCA_032854595.1_PDT001946790.1_genomic.fna	Salmonella_enterica	0.5202	480.193 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCFZ010000001.1 Salmonella enterica strain PNUSAS392934 SAMN37873790-rid19895623.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCFZ010000021.1 Salmonella enterica strain PNUSAS392934 SAMN37873790-rid19895623.guided.12, whole genome shotgun sequence	40111..40548	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABOCFZ010000011.1 Salmonella enterica strain PNUSAS392934 SAMN37873790-rid19895623.denovo.13, whole genome shotgun sequence	32011..32384																																																						avrA	ABOCFZ010000002.1	553714..554583	99.54	870	0						
GCA_032854655.1_PDT001946789.1_genomic.fna	Salmonella_enterica	0.522	466.436 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCGE010000001.1 Salmonella enterica strain PNUSAS392933 SAMN37873791-rid19895613.denovo.01, whole genome shotgun sequence	674286..674723	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCGE010000024.1 Salmonella enterica strain PNUSAS392933 SAMN37873791-rid19895613.guided.18, whole genome shotgun sequence	1480..1917	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCGE010000009.1	150695..151565	99.196	871	0						
GCA_032857045.1_PDT001772519.1_genomic.fna	Salmonella_enterica	0.5194	237.183 KB	8	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	4	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCKE010000001.1 Salmonella enterica strain PNUSAS354308 SAMN35667769-rid18326153.denovo.01, whole genome shotgun sequence	486024..486461	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCKE010000056.1 Salmonella enterica strain PNUSAS354308 SAMN35667769-rid18326153.guided.42, whole genome shotgun sequence	1291..1728	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOCKE010000010.1 Salmonella enterica strain PNUSAS354308 SAMN35667769-rid18326153.denovo.10, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOCKE010000054.1 Salmonella enterica strain PNUSAS354308 SAMN35667769-rid18326153.guided.40, whole genome shotgun sequence	9176..9598	Fosfomycin	LAPJ01000014	sul2	100	816/816	ABOCKE010000039.1 Salmonella enterica strain PNUSAS354308 SAMN35667769-rid18326153.denovo.39, whole genome shotgun sequence	2652..3467	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOCKE010000058.1 Salmonella enterica strain PNUSAS354308 SAMN35667769-rid18326153.guided.45, whole genome shotgun sequence	1908..2723	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOCKE010000040.1 Salmonella enterica strain PNUSAS354308 SAMN35667769-rid18326153.denovo.44, whole genome shotgun sequence	1203..2408	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOCKE010000057.1 Salmonella enterica strain PNUSAS354308 SAMN35667769-rid18326153.guided.43, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCKE010000022.1	64444..65313	99.195	870	0						
GCA_032857085.1_PDT001772524.1_genomic.fna	Salmonella_enterica	0.5216	243.311 KB	7	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCKC010000001.1 Salmonella enterica subsp. enterica serovar Manhattan strain FSIS12322491 SAMN35667788-rid18322873.denovo.01, whole genome shotgun sequence	456083..456520	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCKC010000038.1 Salmonella enterica subsp. enterica serovar Manhattan strain FSIS12322491 SAMN35667788-rid18322873.guided.26, whole genome shotgun sequence	40012..40449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCKC010000008.1	140116..140985	99.425	870	0						
GCA_032857105.1_PDT001778332.1_genomic.fna	Salmonella_enterica	0.519	192.15 KB	8	aroC_10*,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34*	4:i:-	8	aac(6')-Iaa,aadA22,aph(3')-Ia,aac(6')-Iaa,aadA22,aph(3')-Ia,mph(A),lnu(F),mph(A),lnu(F),sul3,sul3,tet(B),tet(A),tet(A),tet(B)	0		2	IncHI2,IncHI2A	aroC	99.8003992015968	100	aroC_10*	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCKB010000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.denovo.01, whole genome shotgun sequence	476361..476798	Amikacin, Tobramycin	NC_003197	aadA22	100	792/792	ABOCKB010000053.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.denovo.60, whole genome shotgun sequence	944..1735	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABOCKB010000058.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.denovo.67, whole genome shotgun sequence	239..1054	Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EF015636	aac(6')-Iaa	100	438/438	ABOCKB010000070.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.guided.39, whole genome shotgun sequence	18892..19329	Amikacin, Tobramycin	NC_003197	aadA22	100	792/792	ABOCKB010000076.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.guided.58, whole genome shotgun sequence	985..1776	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABOCKB010000077.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.guided.65, whole genome shotgun sequence	163..978	Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EF015636	mph(A)	100	906/906	ABOCKB010000051.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.denovo.56, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABOCKB010000053.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.denovo.60, whole genome shotgun sequence	1867..2688	Lincomycin	EU118119	mph(A)	100	906/906	ABOCKB010000074.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.guided.55, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABOCKB010000076.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.guided.58, whole genome shotgun sequence	1908..2729	Lincomycin	EU118119	sul3	100	792/792	ABOCKB010000041.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.denovo.42, whole genome shotgun sequence	13387..14178	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOCKB010000075.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.guided.57, whole genome shotgun sequence	2060..2851	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABOCKB010000047.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.denovo.49, whole genome shotgun sequence	424..1629	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	100	1200/1200	ABOCKB010000049.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.denovo.52, whole genome shotgun sequence	2385..3584	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCKB010000072.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.guided.51, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABOCKB010000073.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.guided.54, whole genome shotgun sequence	2465..3670	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	IncHI2	100	327 / 327	ABOCKB010000015.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.denovo.15, whole genome shotgun sequence	73764..74090	enterobacteriales	IncHI2A	99.52	630 / 630	ABOCKB010000015.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-ON-0046 SAMN35724182-rid18380353.denovo.15, whole genome shotgun sequence	92074..92703																																																avrA	ABOCKB010000007.1	30638..31507	99.885	870	0						
GCA_032857125.1_PDT001772514.1_genomic.fna	Salmonella_enterica	0.5202	162.316 KB	10	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(pB171),IncI2	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCKH010000001.1 Salmonella enterica strain PNUSAS354355 SAMN35667837-rid18322853.denovo.01, whole genome shotgun sequence	63806..64243	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOCKH010000072.1 Salmonella enterica strain PNUSAS354355 SAMN35667837-rid18322853.guided.42, whole genome shotgun sequence	5106..5543	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABOCKH010000022.1 Salmonella enterica strain PNUSAS354355 SAMN35667837-rid18322853.denovo.22, whole genome shotgun sequence	13024..13666	enterobacteriales	IncI2	100	324 / 324	ABOCKH010000033.1 Salmonella enterica strain PNUSAS354355 SAMN35667837-rid18322853.denovo.33, whole genome shotgun sequence	28269..28592																																																											
GCA_032857145.1_PDT001772516.1_genomic.fna	Salmonella_enterica	0.5188	123.81 KB	12	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCKG010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322485 SAMN35667804-rid18322863.denovo.12, whole genome shotgun sequence	84420..84857	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCKG010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322485 SAMN35667804-rid18322863.denovo.60, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOCKG010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322485 SAMN35667804-rid18322863.denovo.60, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOCKG010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322485 SAMN35667804-rid18322863.guided.46, whole genome shotgun sequence	15426..15863	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCKG010000087.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322485 SAMN35667804-rid18322863.guided.67, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOCKG010000087.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322485 SAMN35667804-rid18322863.guided.67, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOCKG010000062.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322485 SAMN35667804-rid18322863.denovo.66, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOCKG010000086.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322485 SAMN35667804-rid18322863.guided.65, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOCKG010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322485 SAMN35667804-rid18322863.denovo.70, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOCKG010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322485 SAMN35667804-rid18322863.denovo.60, whole genome shotgun sequence	5800..6061		enterobacteriales	IncFII	96.95	262 / 261	ABOCKG010000087.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322485 SAMN35667804-rid18322863.guided.67, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOCKG010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322485 SAMN35667804-rid18322863.denovo.56, whole genome shotgun sequence	5677..5818		enterobacteriales	IncX1	100	373 / 373	ABOCKG010000061.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322485 SAMN35667804-rid18322863.denovo.64, whole genome shotgun sequence	2153..2525																											avrA	ABOCKG010000031.1	39484..40353	99.655	870	0						
GCA_032857165.1_PDT001772512.1_genomic.fna	Salmonella_enterica	0.5212	304.774 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCKI010000001.1 Salmonella enterica strain PNUSAS354359 SAMN35667831-rid18319633.denovo.01, whole genome shotgun sequence	293253..293690	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCKI010000028.1 Salmonella enterica strain PNUSAS354359 SAMN35667831-rid18319633.guided.20, whole genome shotgun sequence	9329..9766	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCKI010000016.1 Salmonella enterica strain PNUSAS354359 SAMN35667831-rid18319633.denovo.16, whole genome shotgun sequence	49240..49882	enterobacteriales	IncFII(S)	100	262 / 262	ABOCKI010000016.1 Salmonella enterica strain PNUSAS354359 SAMN35667831-rid18319633.denovo.16, whole genome shotgun sequence	4987..5248																																																avrA	ABOCKI010000002.1	585163..586032	99.54	870	0						
GCA_032857225.1_PDT001772522.1_genomic.fna	Salmonella_enterica	0.5196	145.871 KB	12	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCKD010000014.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322487 SAMN35667778-rid18319643.denovo.14, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCKD010000075.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322487 SAMN35667778-rid18319643.guided.32, whole genome shotgun sequence	16053..16490	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	ABOCKD010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322487 SAMN35667778-rid18319643.denovo.60, whole genome shotgun sequence	1831..2512	enterobacteriales	IncFII	96.56	262 / 261	ABOCKD010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322487 SAMN35667778-rid18319643.denovo.46, whole genome shotgun sequence	9382..9643		enterobacteriales	IncX1	100	373 / 373	ABOCKD010000044.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322487 SAMN35667778-rid18319643.denovo.47, whole genome shotgun sequence	2153..2525																																									avrA	ABOCKD010000034.1	39484..40353	99.655	870	0						
GCA_032857265.1_PDT001772518.1_genomic.fna	Salmonella_enterica	0.5169	133.304 KB	11	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCKF010000020.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322482 SAMN35667766-rid18320813.denovo.020, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCKF010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322482 SAMN35667766-rid18320813.denovo.042, whole genome shotgun sequence	2315..3151	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOCKF010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322482 SAMN35667766-rid18320813.denovo.042, whole genome shotgun sequence	1513..2315	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOCKF010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322482 SAMN35667766-rid18320813.denovo.042, whole genome shotgun sequence	1512..2315	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOCKF010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322482 SAMN35667766-rid18320813.denovo.042, whole genome shotgun sequence	1512..2315	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOCKF010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322482 SAMN35667766-rid18320813.denovo.042, whole genome shotgun sequence	1512..2315	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABOCKF010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322482 SAMN35667766-rid18320813.guided.041, whole genome shotgun sequence	2356..3192	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOCKF010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322482 SAMN35667766-rid18320813.guided.041, whole genome shotgun sequence	1554..2356	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOCKF010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322482 SAMN35667766-rid18320813.guided.041, whole genome shotgun sequence	1553..2356	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOCKF010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322482 SAMN35667766-rid18320813.guided.041, whole genome shotgun sequence	1553..2356	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOCKF010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322482 SAMN35667766-rid18320813.guided.041, whole genome shotgun sequence	1553..2356	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABOCKF010000117.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322482 SAMN35667766-rid18320813.guided.050, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOCKF010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322482 SAMN35667766-rid18320813.denovo.032, whole genome shotgun sequence	23143..23469	enterobacteriales	IncHI2A	99.52	630 / 630	ABOCKF010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322482 SAMN35667766-rid18320813.denovo.032, whole genome shotgun sequence	41453..42082		enterobacteriales	IncX1	100	373 / 373	ABOCKF010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322482 SAMN35667766-rid18320813.denovo.074, whole genome shotgun sequence	2218..2590																																									avrA	ABOCKF010000030.1	39489..40358	99.655	870	0						
GCA_032857285.1_PDT001772506.1_genomic.fna	Salmonella_enterica	0.5219	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCKK010000005.1 Salmonella enterica strain PNUSAS354369 SAMN35667842-rid18322843.denovo.05, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCKK010000040.1 Salmonella enterica strain PNUSAS354369 SAMN35667842-rid18322843.guided.26, whole genome shotgun sequence	14129..14566	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOCKK010000018.1 Salmonella enterica strain PNUSAS354369 SAMN35667842-rid18322843.denovo.18, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOCKK010000018.1 Salmonella enterica strain PNUSAS354369 SAMN35667842-rid18322843.denovo.18, whole genome shotgun sequence	30407..30668																																																avrA	ABOCKK010000009.1	39737..40605	100	869	0						
GCA_032857305.1_PDT001772508.1_genomic.fna	Salmonella_enterica	0.5233	397.463 KB	4	aroC_46,dnaN_54,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	127	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_54	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOCKJ010000001.1 Salmonella enterica strain PNUSAS354372 SAMN35667853-rid18320803.denovo.01, whole genome shotgun sequence	667223..667660	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOCKJ010000027.1 Salmonella enterica strain PNUSAS354372 SAMN35667853-rid18320803.guided.20, whole genome shotgun sequence	5576..6013	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOCKJ010000002.1	508884..509753	99.31	870	0						
GCA_032857325.1_PDT001772504.1_genomic.fna	Salmonella_enterica	0.5216	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCKM010000002.1 Salmonella enterica strain PNUSAS354350 SAMN35667848-rid18322833.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCKM010000070.1 Salmonella enterica strain PNUSAS354350 SAMN35667848-rid18322833.guided.44, whole genome shotgun sequence	82..519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOCKM010000043.1 Salmonella enterica strain PNUSAS354350 SAMN35667848-rid18322833.denovo.46, whole genome shotgun sequence	1251..1381	enterobacteriales	IncFIB(S)	100	643 / 643	ABOCKM010000014.1 Salmonella enterica strain PNUSAS354350 SAMN35667848-rid18322833.denovo.14, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	ABOCKM010000014.1 Salmonella enterica strain PNUSAS354350 SAMN35667848-rid18322833.denovo.14, whole genome shotgun sequence	30407..30668																																									avrA	ABOCKM010000003.1	401393..402261	100	869	0						
GCA_032857405.1_PDT001772497.1_genomic.fna	Salmonella_enterica	0.523	57.963 KB	30	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCKP010000007.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313072 SAMN35668393-rid18313783.denovo.007, whole genome shotgun sequence	87512..87949	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOCKP010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313072 SAMN35668393-rid18313783.denovo.074, whole genome shotgun sequence	22674..23465	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCKP010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313072 SAMN35668393-rid18313783.denovo.074, whole genome shotgun sequence	22674..23465	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOCKP010000168.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313072 SAMN35668393-rid18313783.guided.064, whole genome shotgun sequence	14172..14609	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOCKP010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313072 SAMN35668393-rid18313783.guided.102, whole genome shotgun sequence	175..966	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCKP010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313072 SAMN35668393-rid18313783.guided.102, whole genome shotgun sequence	175..966	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOCKP010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313072 SAMN35668393-rid18313783.denovo.074, whole genome shotgun sequence	21330..22169	Sulfamethoxazole	U12338	sul1	100	840/840	ABOCKP010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313072 SAMN35668393-rid18313783.guided.102, whole genome shotgun sequence	1471..2310	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOCKP010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313072 SAMN35668393-rid18313783.denovo.074, whole genome shotgun sequence	7614..8813	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCKP010000172.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313072 SAMN35668393-rid18313783.guided.139, whole genome shotgun sequence	477..1676	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOCKP010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313072 SAMN35668393-rid18313783.denovo.094, whole genome shotgun sequence	14013..14572																																																						avrA	ABOCKP010000021.1	61814..62683	99.655	870	0						
GCA_032857445.1_PDT001772494.1_genomic.fna	Salmonella_enterica	0.5192	126.572 KB	12	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCKR010000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313073 SAMN35668406-rid18324533.denovo.09, whole genome shotgun sequence	43409..43846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCKR010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313073 SAMN35668406-rid18324533.denovo.57, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOCKR010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313073 SAMN35668406-rid18324533.denovo.57, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOCKR010000087.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313073 SAMN35668406-rid18324533.guided.28, whole genome shotgun sequence	3921..4358	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCKR010000089.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313073 SAMN35668406-rid18324533.guided.67, whole genome shotgun sequence	2076..2912	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOCKR010000089.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313073 SAMN35668406-rid18324533.guided.67, whole genome shotgun sequence	1273..2076	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOCKR010000059.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313073 SAMN35668406-rid18324533.denovo.62, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOCKR010000090.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313073 SAMN35668406-rid18324533.guided.69, whole genome shotgun sequence	2383..3588	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOCKR010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313073 SAMN35668406-rid18324533.denovo.48, whole genome shotgun sequence	14966..15647	enterobacteriales	IncFII	96.95	262 / 261	ABOCKR010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313073 SAMN35668406-rid18324533.denovo.57, whole genome shotgun sequence	5800..6061		enterobacteriales	IncFII	96.95	262 / 261	ABOCKR010000089.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313073 SAMN35668406-rid18324533.guided.67, whole genome shotgun sequence	3535..3796		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOCKR010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313073 SAMN35668406-rid18324533.denovo.52, whole genome shotgun sequence	3731..3872		enterobacteriales	IncX1	100	373 / 373	ABOCKR010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313073 SAMN35668406-rid18324533.denovo.61, whole genome shotgun sequence	2153..2525																											avrA	ABOCKR010000034.1	39484..40353	99.655	870	0						
GCA_032857465.1_PDT001772493.1_genomic.fna	Salmonella_enterica	0.5236	109.758 KB	14	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCKT010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313076 SAMN35668396-rid18320793.denovo.01, whole genome shotgun sequence	377998..378435	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCKT010000089.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313076 SAMN35668396-rid18320793.guided.64, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032857685.1_PDT001772473.1_genomic.fna	Salmonella_enterica	0.5214	406.322 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCLD010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313074 SAMN35668394-rid18308573.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCLD010000038.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313074 SAMN35668394-rid18308573.guided.20, whole genome shotgun sequence	8123..8560	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col156	94.81	154 / 154	ABOCLD010000030.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313074 SAMN35668394-rid18308573.denovo.33, whole genome shotgun sequence	791..944	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCLD010000020.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313074 SAMN35668394-rid18308573.denovo.23, whole genome shotgun sequence	6826..7468		enterobacteriales	IncFII(S)	100	262 / 262	ABOCLD010000022.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313074 SAMN35668394-rid18308573.denovo.25, whole genome shotgun sequence	3407..3668																																									avrA	ABOCLD010000002.1	553636..554505	99.54	870	0						
GCA_032857705.1_PDT001772471.1_genomic.fna	Salmonella_enterica	0.5205	95.338 KB	14	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCLE010000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313075 SAMN35668395-rid18312913.denovo.009, whole genome shotgun sequence	85617..86054	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCLE010000112.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313075 SAMN35668395-rid18312913.guided.053, whole genome shotgun sequence	10920..11357	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOCLE010000069.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313075 SAMN35668395-rid18312913.denovo.072, whole genome shotgun sequence	4679..4820	enterobacteriales	IncX1	100	373 / 373	ABOCLE010000087.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313075 SAMN35668395-rid18312913.denovo.090, whole genome shotgun sequence	2153..2525																																																avrA	ABOCLE010000028.1	39620..40489	99.655	870	0						
GCA_032857745.1_PDT001772469.1_genomic.fna	Salmonella_enterica	0.5224	47.203 KB	34	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCLG010000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313057 SAMN35668385-rid18317463.denovo.015, whole genome shotgun sequence	12477..12914	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCLG010000194.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313057 SAMN35668385-rid18317463.guided.078, whole genome shotgun sequence	12386..12823	Amikacin, Tobramycin	NC_003197	sul2	99.88	816/816	ABOCLG010000008.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313057 SAMN35668385-rid18317463.denovo.008, whole genome shotgun sequence	36236..37051	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABOCLG010000197.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313057 SAMN35668385-rid18317463.guided.115, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOCLG010000008.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313057 SAMN35668385-rid18317463.denovo.008, whole genome shotgun sequence	32860..34059	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCLG010000197.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313057 SAMN35668385-rid18317463.guided.115, whole genome shotgun sequence	4544..5743	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOCLG010000146.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313057 SAMN35668385-rid18317463.denovo.150, whole genome shotgun sequence	371..501	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOCLG010000147.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313057 SAMN35668385-rid18317463.denovo.151, whole genome shotgun sequence	4277..4418																																																avrA	ABOCLG010000003.1	104974..105843	99.885	870	0						
GCA_032857765.1_PDT001772467.1_genomic.fna	Salmonella_enterica	0.522	56.81 KB	28	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		2	IncC,IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCLJ010000012.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312823 SAMN35668196-rid18307033.denovo.012, whole genome shotgun sequence	13066..13503	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCLJ010000170.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312823 SAMN35668196-rid18307033.guided.030, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABOCLJ010000041.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312823 SAMN35668196-rid18307033.denovo.042, whole genome shotgun sequence	41633..42448	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOCLJ010000173.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312823 SAMN35668196-rid18307033.guided.131, whole genome shotgun sequence	297..1112	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOCLJ010000041.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312823 SAMN35668196-rid18307033.denovo.042, whole genome shotgun sequence	38257..39456	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCLJ010000173.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312823 SAMN35668196-rid18307033.guided.131, whole genome shotgun sequence	3289..4488	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncC	100	417 / 417	ABOCLJ010000114.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312823 SAMN35668196-rid18307033.denovo.117, whole genome shotgun sequence	3289..3705	enterobacteriales	IncX1	98.93	374 / 374	ABOCLJ010000160.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312823 SAMN35668196-rid18307033.denovo.165, whole genome shotgun sequence	192..565																																																avrA	ABOCLJ010000018.1	62153..63022	99.885	870	0						
GCA_032857925.1_PDT001772444.1_genomic.fna	Salmonella_enterica	0.5105	248.561 KB	9	aroC_29,dnaN_173,hemD_30,hisD_212,purE_21,sucA_145,thrA_132	574	48:i:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_173	hemD	100	100	hemD_30	hisD	100	100	hisD_212	purE	100	100	purE_21	sucA	100	100	sucA_145	thrA	100	100	thrA_132	48	i	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:i:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCLQ010000008.1 Salmonella enterica strain PNUSAS354371 SAMN35667854-rid18326133.denovo.08, whole genome shotgun sequence	95136..95573	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOCLQ010000067.1 Salmonella enterica strain PNUSAS354371 SAMN35667854-rid18326133.guided.36, whole genome shotgun sequence	3803..4240	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCLQ010000009.1	144571..145440	96.667	870	0						
GCA_032857945.1_PDT001772445.1_genomic.fna	Salmonella_enterica	0.5215	201.009 KB	8	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOCLP010000005.1 Salmonella enterica strain PNUSAS354373 SAMN35667855-rid18315403.denovo.05, whole genome shotgun sequence	135790..136227	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOCLP010000055.1 Salmonella enterica strain PNUSAS354373 SAMN35667855-rid18315403.guided.35, whole genome shotgun sequence	153..590	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCLP010000013.1	101804..102673	99.655	870	0						
GCA_032857965.1_PDT001772443.1_genomic.fna	Salmonella_enterica	0.523	329.268 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCLR010000001.1 Salmonella enterica strain PNUSAS354362 SAMN35667843-rid18307013.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOCLR010000043.1 Salmonella enterica strain PNUSAS354362 SAMN35667843-rid18307013.guided.25, whole genome shotgun sequence	8435..8872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCLR010000005.1	39420..40289	99.655	870	0						
GCA_032857985.1_PDT001772439.1_genomic.fna	Salmonella_enterica	0.5192	353.983 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCLT010000001.1 Salmonella enterica strain PNUSAS354352 SAMN35667846-rid18324503.denovo.01, whole genome shotgun sequence	497850..498287	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCLT010000039.1 Salmonella enterica strain PNUSAS354352 SAMN35667846-rid18324503.guided.29, whole genome shotgun sequence	4096..4533	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCLT010000016.1	39348..40217	99.425	870	0						
GCA_032858005.1_PDT001772441.1_genomic.fna	Salmonella_enterica	0.5221	398.163 KB	5	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOCLS010000005.1 Salmonella enterica strain PNUSAS354363 SAMN35667841-rid18308553.denovo.05, whole genome shotgun sequence	252456..252893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCLS010000024.1 Salmonella enterica strain PNUSAS354363 SAMN35667841-rid18308553.denovo.27, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOCLS010000024.1 Salmonella enterica strain PNUSAS354363 SAMN35667841-rid18308553.denovo.27, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOCLS010000024.1 Salmonella enterica strain PNUSAS354363 SAMN35667841-rid18308553.denovo.27, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOCLS010000024.1 Salmonella enterica strain PNUSAS354363 SAMN35667841-rid18308553.denovo.27, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOCLS010000024.1 Salmonella enterica strain PNUSAS354363 SAMN35667841-rid18308553.denovo.27, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOCLS010000038.1 Salmonella enterica strain PNUSAS354363 SAMN35667841-rid18308553.guided.19, whole genome shotgun sequence	28478..28915	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCLS010000041.1 Salmonella enterica strain PNUSAS354363 SAMN35667841-rid18308553.guided.30, whole genome shotgun sequence	1138..1974	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOCLS010000041.1 Salmonella enterica strain PNUSAS354363 SAMN35667841-rid18308553.guided.30, whole genome shotgun sequence	336..1138	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOCLS010000041.1 Salmonella enterica strain PNUSAS354363 SAMN35667841-rid18308553.guided.30, whole genome shotgun sequence	335..1138	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOCLS010000041.1 Salmonella enterica strain PNUSAS354363 SAMN35667841-rid18308553.guided.30, whole genome shotgun sequence	335..1138	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOCLS010000041.1 Salmonella enterica strain PNUSAS354363 SAMN35667841-rid18308553.guided.30, whole genome shotgun sequence	335..1138	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOCLS010000026.1 Salmonella enterica strain PNUSAS354363 SAMN35667841-rid18308553.denovo.29, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCLS010000042.1 Salmonella enterica strain PNUSAS354363 SAMN35667841-rid18308553.guided.31, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABOCLS010000031.1 Salmonella enterica strain PNUSAS354363 SAMN35667841-rid18308553.denovo.36, whole genome shotgun sequence	805..997																																																						avrA	ABOCLS010000001.1	572931..573800	99.655	870	0						
GCA_032858025.1_PDT001772437.1_genomic.fna	Salmonella_enterica	0.522	191.426 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCLU010000002.1 Salmonella enterica strain PNUSAS354361 SAMN35667844-rid18319593.denovo.02, whole genome shotgun sequence	145427..145864	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCLU010000046.1 Salmonella enterica strain PNUSAS354361 SAMN35667844-rid18319593.guided.35, whole genome shotgun sequence	4832..5269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOCLU010000001.1	548327..549195	99.77	870	0						
GCA_032858045.1_PDT001772435.1_genomic.fna	Salmonella_enterica	0.5206	321.623 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCLV010000001.1 Salmonella enterica strain PNUSAS354358 SAMN35667832-rid18315393.denovo.01, whole genome shotgun sequence	477459..477896	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCLV010000041.1 Salmonella enterica strain PNUSAS354358 SAMN35667832-rid18315393.guided.25, whole genome shotgun sequence	24903..25340	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCLV010000018.1	39469..40339	99.196	871	0						
GCA_032858065.1_PDT001772427.1_genomic.fna	Salmonella_enterica	0.521	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCLZ010000001.1 Salmonella enterica strain PNUSAS354315 SAMN35667783-rid18319583.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCLZ010000028.1 Salmonella enterica strain PNUSAS354315 SAMN35667783-rid18319583.guided.18, whole genome shotgun sequence	9602..10039	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCLZ010000017.1 Salmonella enterica strain PNUSAS354315 SAMN35667783-rid18319583.denovo.19, whole genome shotgun sequence	3077..3719	enterobacteriales	IncFII(S)	100	262 / 262	ABOCLZ010000018.1 Salmonella enterica strain PNUSAS354315 SAMN35667783-rid18319583.denovo.20, whole genome shotgun sequence	3385..3646																																																avrA	ABOCLZ010000002.1	553126..553995	99.54	870	0						
GCA_032858085.1_PDT001772429.1_genomic.fna	Salmonella_enterica	0.522	213.795 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCLX010000002.1 Salmonella enterica strain PNUSAS354354 SAMN35667838-rid18322823.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCLX010000048.1 Salmonella enterica strain PNUSAS354354 SAMN35667838-rid18322823.guided.33, whole genome shotgun sequence	14848..15285	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOCLX010000016.1 Salmonella enterica strain PNUSAS354354 SAMN35667838-rid18322823.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOCLX010000016.1 Salmonella enterica strain PNUSAS354354 SAMN35667838-rid18322823.denovo.16, whole genome shotgun sequence	30317..30578																																																avrA	ABOCLX010000004.1	174355..175223	100	869	0						
GCA_032858105.1_PDT001772431.1_genomic.fna	Salmonella_enterica	0.5139	287.8 KB	7	aroC_452,dnaN_26,hemD_30,hisD_144,purE_131,sucA_145,thrA_134	1877	61:l,v:z35	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(pCRY)	aroC	100	100	aroC_452	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_144	purE	100	100	purE_131	sucA	100	100	sucA_145	thrA	100	100	thrA_134	61	l,v	z35	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:l,v:z35		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOCLW010000009.1 Salmonella enterica strain PNUSAS354360 SAMN35667830-rid18320773.denovo.09, whole genome shotgun sequence	88476..88913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOCLW010000047.1 Salmonella enterica strain PNUSAS354360 SAMN35667830-rid18320773.guided.23, whole genome shotgun sequence	25942..26379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOCLW010000036.1 Salmonella enterica strain PNUSAS354360 SAMN35667830-rid18320773.denovo.40, whole genome shotgun sequence	2914..3044	enterobacteriales	IncFII(pCRY)	94.27	593 / 593	ABOCLW010000028.1 Salmonella enterica strain PNUSAS354360 SAMN35667830-rid18320773.denovo.29, whole genome shotgun sequence	648..1240																																																avrA	ABOCLW010000011.1	155543..156412	96.437	870	0						
GCA_032858125.1_PDT001772425.1_genomic.fna	Salmonella_enterica	0.5217	306.971 KB	5	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOCLY010000001.1 Salmonella enterica strain PNUSAS354314 SAMN35667785-rid18319573.denovo.01, whole genome shotgun sequence	346927..347364	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOCLY010000031.1 Salmonella enterica strain PNUSAS354314 SAMN35667785-rid18319573.guided.23, whole genome shotgun sequence	1450..1887	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCLY010000006.1	151002..151871	99.54	870	0						
GCA_032858145.1_PDT001772423.1_genomic.fna	Salmonella_enterica	0.5226	406.578 KB	4	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOCMA010000002.1 Salmonella enterica strain PNUSAS354320 SAMN35667780-rid18315383.denovo.02, whole genome shotgun sequence	174662..175099	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOCMA010000028.1 Salmonella enterica strain PNUSAS354320 SAMN35667780-rid18315383.guided.21, whole genome shotgun sequence	1684..2121	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOCMA010000005.1	93863..94732	99.77	870	0						
GCA_032858165.1_PDT001772421.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCMB010000001.1 Salmonella enterica strain PNUSAS354312 SAMN35667777-rid18321333.denovo.01, whole genome shotgun sequence	770001..770438	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCMB010000026.1 Salmonella enterica strain PNUSAS354312 SAMN35667777-rid18321333.guided.23, whole genome shotgun sequence	1049..1486	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCMB010000019.1 Salmonella enterica strain PNUSAS354312 SAMN35667777-rid18321333.denovo.19, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABOCMB010000020.1 Salmonella enterica strain PNUSAS354312 SAMN35667777-rid18321333.denovo.20, whole genome shotgun sequence	3398..3659																																																avrA	ABOCMB010000002.1	553642..554511	99.54	870	0						
GCA_032858185.1_PDT001772418.1_genomic.fna	Salmonella_enterica	0.5199	366.096 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	11	aac(6')-Iaa,aph(3')-IIa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,aph(3')-IIa,blaOXA-10,blaOXA-10,fosA7,fosA7,floR,cmlA1,cmlA1,floR,qnrS1,qnrS1,ARR-2,ARR-2,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncX1	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCMD010000001.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.denovo.01, whole genome shotgun sequence	486111..486548	Amikacin, Tobramycin	NC_003197	aph(3')-IIa	100	795/795	ABOCMD010000025.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.denovo.27, whole genome shotgun sequence	14751..15545	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	aadA1	99.75	792/792	ABOCMD010000028.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.denovo.32, whole genome shotgun sequence	730..1521	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCMD010000028.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.denovo.32, whole genome shotgun sequence	730..1521	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.95	438/438	ABOCMD010000039.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.guided.25, whole genome shotgun sequence	11638..12075	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOCMD010000043.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.guided.33, whole genome shotgun sequence	4223..5014	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCMD010000043.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.guided.33, whole genome shotgun sequence	4223..5014	Spectinomycin, Streptomycin	JQ414041	aph(3')-IIa	100	795/795	ABOCMD010000045.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.guided.37, whole genome shotgun sequence	1715..2509	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	blaOXA-10	100	801/801	ABOCMD010000028.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.denovo.32, whole genome shotgun sequence	1538..2338	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaOXA-10	100	801/801	ABOCMD010000043.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.guided.33, whole genome shotgun sequence	3406..4206	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	fosA7	97.16	423/423	ABOCMD010000004.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.denovo.04, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOCMD010000040.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.guided.26, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014	floR	98.19	1214/1215	ABOCMD010000026.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.denovo.28, whole genome shotgun sequence	8125..9338	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.68	1260/1260	ABOCMD010000028.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.denovo.32, whole genome shotgun sequence	2603..3862	Chloramphenicol	M64556	cmlA1	99.68	1260/1260	ABOCMD010000043.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.guided.33, whole genome shotgun sequence	1882..3141	Chloramphenicol	M64556	floR	98.19	1214/1215	ABOCMD010000047.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.guided.39, whole genome shotgun sequence	131..1344	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABOCMD010000026.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.denovo.28, whole genome shotgun sequence	1014..1670	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOCMD010000044.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.guided.35, whole genome shotgun sequence	1055..1711	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABOCMD010000028.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.denovo.32, whole genome shotgun sequence	4183..4635	Rifampicin	HQ141279	ARR-2	100	453/453	ABOCMD010000043.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.guided.33, whole genome shotgun sequence	1109..1561	Rifampicin	HQ141279	tet(A)	99.92	1275/1275	ABOCMD010000026.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.denovo.28, whole genome shotgun sequence	6250..7524	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1275/1275	ABOCMD010000046.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.guided.38, whole genome shotgun sequence	752..2026	Doxycycline, Tetracycline	AF534183	dfrA14	100	474/474	ABOCMD010000028.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.denovo.32, whole genome shotgun sequence	182..655	Trimethoprim	KF921535	dfrA14	100	474/474	ABOCMD010000048.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.guided.41, whole genome shotgun sequence	569..1042	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncX1	98.4	374 / 374	ABOCMD010000025.1 Salmonella enterica strain PNUSAS354309 SAMN35667768-rid18304513.denovo.27, whole genome shotgun sequence	7690..8063																																																						avrA	ABOCMD010000002.1	140060..140929	99.195	870	0						
GCA_032858195.1_PDT001772419.1_genomic.fna	Salmonella_enterica	0.5211	283.88 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCMC010000003.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322486 SAMN35667776-rid18324493.denovo.03, whole genome shotgun sequence	293266..293703	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCMC010000041.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322486 SAMN35667776-rid18324493.guided.25, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCMC010000026.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322486 SAMN35667776-rid18324493.denovo.29, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABOCMC010000029.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322486 SAMN35667776-rid18324493.denovo.32, whole genome shotgun sequence	3388..3649																																																avrA	ABOCMC010000001.1	585269..586138	99.54	870	0						
GCA_032858225.1_PDT001772417.1_genomic.fna	Salmonella_enterica	0.5215	182.43 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCME010000001.1 Salmonella enterica strain PNUSAS354313 SAMN35667773-rid18319563.denovo.01, whole genome shotgun sequence	486073..486510	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	412/438	ABOCME010000049.1 Salmonella enterica strain PNUSAS354313 SAMN35667773-rid18319563.guided.39, whole genome shotgun sequence	1..412	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOCME010000036.1 Salmonella enterica strain PNUSAS354313 SAMN35667773-rid18319563.denovo.38, whole genome shotgun sequence	423..1628	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOCME010000050.1 Salmonella enterica strain PNUSAS354313 SAMN35667773-rid18319563.guided.41, whole genome shotgun sequence	2870..4075	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABOCME010000019.1	93865..94734	99.885	870	0						
GCA_032858245.1_PDT001772415.1_genomic.fna	Salmonella_enterica	0.5184	179.044 KB	8	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	4	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,mph(A),mph(A),tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCMH010000001.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322484 SAMN35667774-rid18327673.denovo.01, whole genome shotgun sequence	486112..486549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCMH010000054.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322484 SAMN35667774-rid18327673.guided.35, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOCMH010000007.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322484 SAMN35667774-rid18327673.denovo.07, whole genome shotgun sequence	18002..18424	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOCMH010000055.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322484 SAMN35667774-rid18327673.guided.36, whole genome shotgun sequence	16565..16987	Fosfomycin	LAPJ01000014	mph(A)	100	906/906	ABOCMH010000041.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322484 SAMN35667774-rid18327673.denovo.47, whole genome shotgun sequence	3164..4069	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	ABOCMH010000058.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322484 SAMN35667774-rid18327673.guided.46, whole genome shotgun sequence	110..1015	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	tet(B)	100	1206/1206	ABOCMH010000035.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322484 SAMN35667774-rid18327673.denovo.39, whole genome shotgun sequence	4880..6085	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOCMH010000057.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322484 SAMN35667774-rid18327673.guided.43, whole genome shotgun sequence	4920..6125	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOCMH010000034.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322484 SAMN35667774-rid18327673.denovo.37, whole genome shotgun sequence	2209..2350																																																						avrA	ABOCMH010000009.1	169358..170227	99.195	870	0						
GCA_032858265.1_PDT001772416.1_genomic.fna	Salmonella_enterica	0.5209	189.744 KB	11	aroC_48,dnaN_108,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	356	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(pB171),IncFII(pRSB107)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_108	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCMI010000011.1 Salmonella enterica strain PNUSAS354311 SAMN35667770-rid18319743.denovo.11, whole genome shotgun sequence	37916..38353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOCMI010000067.1 Salmonella enterica strain PNUSAS354311 SAMN35667770-rid18319743.guided.66, whole genome shotgun sequence	3..440	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABOCMI010000018.1 Salmonella enterica strain PNUSAS354311 SAMN35667770-rid18319743.denovo.18, whole genome shotgun sequence	108816..109458	enterobacteriales	IncFII(pRSB107)	96.18	262 / 261	ABOCMI010000029.1 Salmonella enterica strain PNUSAS354311 SAMN35667770-rid18319743.denovo.29, whole genome shotgun sequence	20574..20835																																																											
GCA_032858285.1_PDT001772414.1_genomic.fna	Salmonella_enterica	0.521	155.571 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCMG010000002.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322489 SAMN35667771-rid18312903.denovo.02, whole genome shotgun sequence	232261..232698	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOCMG010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322489 SAMN35667771-rid18312903.guided.19, whole genome shotgun sequence	31736..32173	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOCMG010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322489 SAMN35667771-rid18312903.denovo.51, whole genome shotgun sequence	9109..9668																																																						avrA	ABOCMG010000008.1	149551..150420	99.655	870	0						
GCA_032858305.1_PDT001772412.1_genomic.fna	Salmonella_enterica	0.5211	375.784 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCMF010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322483 SAMN35667767-rid18303073.denovo.01, whole genome shotgun sequence	293052..293489	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCMF010000035.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322483 SAMN35667767-rid18303073.guided.17, whole genome shotgun sequence	16076..16513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCMF010000025.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322483 SAMN35667767-rid18303073.denovo.27, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOCMF010000026.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322483 SAMN35667767-rid18303073.denovo.28, whole genome shotgun sequence	3388..3649																																																avrA	ABOCMF010000002.1	553635..554504	99.54	870	0						
GCA_032858325.1_PDT001772212.1_genomic.fna	Salmonella_enterica	0.5221	141.941 KB	11	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOCMJ010000031.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322457 SAMN35667084-rid18321323.denovo.31, whole genome shotgun sequence	30317..30754	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOCMJ010000066.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322457 SAMN35667084-rid18321323.guided.43, whole genome shotgun sequence	16453..16890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOCMJ010000052.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322457 SAMN35667084-rid18321323.denovo.55, whole genome shotgun sequence	3736..3866	enterobacteriales	Col440I	91.74	109 / 114	ABOCMJ010000052.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322457 SAMN35667084-rid18321323.denovo.55, whole genome shotgun sequence	4505..4613		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOCMJ010000043.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322457 SAMN35667084-rid18321323.denovo.46, whole genome shotgun sequence	4766..4907																																									avrA	ABOCMJ010000005.1	145454..146323	99.425	870	0						
GCA_032858345.1_PDT001772211.1_genomic.fna	Salmonella_enterica	0.52	252.51 KB	6	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCMK010000002.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12322453 SAMN35666070-rid18303063.denovo.02, whole genome shotgun sequence	180435..180872	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCMK010000038.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12322453 SAMN35666070-rid18303063.guided.25, whole genome shotgun sequence	16053..16490	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCMK010000001.1	145394..146263	98.966	870	0						
GCA_032858365.1_PDT001772210.1_genomic.fna	Salmonella_enterica	0.5155	236.636 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(4)-Ia,aac(3)-IV,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	4	IncFII(pSE11),IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCML010000011.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.denovo.11, whole genome shotgun sequence	84702..85139	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCML010000019.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.denovo.19, whole genome shotgun sequence	1920..2756	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOCML010000019.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.denovo.19, whole genome shotgun sequence	1118..1920	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOCML010000019.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.denovo.19, whole genome shotgun sequence	1117..1920	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOCML010000019.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.denovo.19, whole genome shotgun sequence	1117..1920	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOCML010000019.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.denovo.19, whole genome shotgun sequence	1117..1920	Streptomycin	AF321550	aph(4)-Ia	100	1026/1026	ABOCML010000029.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.denovo.31, whole genome shotgun sequence	41357..42382	Hygromycin	V01499	aac(3)-IV	99.87	777/777	ABOCML010000029.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.denovo.31, whole genome shotgun sequence	42611..43387	Gentamicin, Tobramycin	DQ241380	aph(6)-Id	100	837/837	ABOCML010000082.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.guided.28, whole genome shotgun sequence	1961..2797	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOCML010000082.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.guided.28, whole genome shotgun sequence	1159..1961	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOCML010000082.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.guided.28, whole genome shotgun sequence	1158..1961	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOCML010000082.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.guided.28, whole genome shotgun sequence	1158..1961	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOCML010000082.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.guided.28, whole genome shotgun sequence	1158..1961	Streptomycin	AF321550	aph(4)-Ia	100	1026/1026	ABOCML010000083.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.guided.30, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	99.87	777/777	ABOCML010000083.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.guided.30, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.95	438/438	ABOCML010000086.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.guided.44, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOCML010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.denovo.57, whole genome shotgun sequence	1389..2594	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOCML010000087.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.guided.58, whole genome shotgun sequence	4199..5404	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABOCML010000042.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.denovo.47, whole genome shotgun sequence	3660..3919	enterobacteriales	IncHI2	100	327 / 327	ABOCML010000023.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.denovo.23, whole genome shotgun sequence	24719..25045		enterobacteriales	IncHI2A	99.52	630 / 630	ABOCML010000023.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.denovo.23, whole genome shotgun sequence	39913..40542		enterobacteriales	IncX1	100	373 / 373	ABOCML010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322452 SAMN35666068-rid18324483.denovo.59, whole genome shotgun sequence	2153..2525																																		avrA	ABOCML010000027.1	39484..40353	99.655	870	0						
GCA_032858385.1_PDT001772208.1_genomic.fna	Salmonella_enterica	0.5217	180.37 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCMM010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322455 SAMN35667065-rid18316333.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOCMM010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322455 SAMN35667065-rid18316333.denovo.44, whole genome shotgun sequence	8014..8805	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCMM010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322455 SAMN35667065-rid18316333.denovo.44, whole genome shotgun sequence	8014..8805	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOCMM010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322455 SAMN35667065-rid18316333.guided.35, whole genome shotgun sequence	16064..16501	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOCMM010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322455 SAMN35667065-rid18316333.guided.51, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCMM010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322455 SAMN35667065-rid18316333.guided.51, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABOCMM010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322455 SAMN35667065-rid18316333.denovo.57, whole genome shotgun sequence	948..1823	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOCMM010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322455 SAMN35667065-rid18316333.guided.56, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABOCMM010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322455 SAMN35667065-rid18316333.denovo.44, whole genome shotgun sequence	6670..7509	Sulfamethoxazole	U12338	sul1	100	840/840	ABOCMM010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322455 SAMN35667065-rid18316333.guided.51, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOCMM010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322455 SAMN35667065-rid18316333.denovo.47, whole genome shotgun sequence	923..2122	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCMM010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322455 SAMN35667065-rid18316333.guided.49, whole genome shotgun sequence	691..1890	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOCMM010000029.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322455 SAMN35667065-rid18316333.denovo.29, whole genome shotgun sequence	27333..27892																																																						avrA	ABOCMM010000002.1	95072..95941	99.655	870	0						
GCA_032858405.1_PDT001772206.1_genomic.fna	Salmonella_enterica	0.5204	241.937 KB	6	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOCMO010000001.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322448 SAMN35665081-rid18319553.denovo.01, whole genome shotgun sequence	384028..384465	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOCMO010000066.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322448 SAMN35665081-rid18319553.guided.31, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABOCMO010000040.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322448 SAMN35665081-rid18319553.denovo.43, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOCMO010000024.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322448 SAMN35665081-rid18319553.denovo.24, whole genome shotgun sequence	31087..31620		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOCMO010000023.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322448 SAMN35665081-rid18319553.denovo.23, whole genome shotgun sequence	16475..16616																																									avrA	ABOCMO010000003.1	95269..96138	99.425	870	0						
GCA_032858425.1_PDT001772207.1_genomic.fna	Salmonella_enterica	0.52	183.338 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCMN010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322456 SAMN35666065-rid18320763.denovo.01, whole genome shotgun sequence	382028..382465	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOCMN010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322456 SAMN35666065-rid18320763.denovo.40, whole genome shotgun sequence	12848..13639	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCMN010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322456 SAMN35666065-rid18320763.denovo.40, whole genome shotgun sequence	12848..13639	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOCMN010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322456 SAMN35666065-rid18320763.guided.24, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOCMN010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322456 SAMN35666065-rid18320763.guided.47, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCMN010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322456 SAMN35666065-rid18320763.guided.47, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOCMN010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322456 SAMN35666065-rid18320763.denovo.40, whole genome shotgun sequence	11504..12343	Sulfamethoxazole	U12338	sul1	100	840/840	ABOCMN010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322456 SAMN35666065-rid18320763.guided.47, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOCMN010000034.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322456 SAMN35666065-rid18320763.denovo.36, whole genome shotgun sequence	911..2110	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCMN010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322456 SAMN35666065-rid18320763.guided.50, whole genome shotgun sequence	870..2069	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOCMN010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322456 SAMN35666065-rid18320763.denovo.38, whole genome shotgun sequence	9109..9668																																																						avrA	ABOCMN010000002.1	149831..150700	99.655	870	0						
GCA_032858445.1_PDT001772205.1_genomic.fna	Salmonella_enterica	0.5217	159.852 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCMP010000006.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.denovo.06, whole genome shotgun sequence	221586..222023	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOCMP010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.denovo.49, whole genome shotgun sequence	11976..12767	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCMP010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.denovo.49, whole genome shotgun sequence	11976..12767	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOCMP010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.denovo.53, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOCMP010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.denovo.53, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOCMP010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.guided.33, whole genome shotgun sequence	32657..33094	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOCMP010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.guided.48, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCMP010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.guided.48, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOCMP010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.guided.66, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOCMP010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.guided.66, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOCMP010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.denovo.53, whole genome shotgun sequence	8678..9891	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOCMP010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.guided.64, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOCMP010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.denovo.49, whole genome shotgun sequence	10632..11471	Sulfamethoxazole	U12338	sul1	100	840/840	ABOCMP010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.guided.48, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOCMP010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.denovo.45, whole genome shotgun sequence	951..2150	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCMP010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.guided.47, whole genome shotgun sequence	959..2158	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOCMP010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322449 SAMN35665082-rid18309823.denovo.42, whole genome shotgun sequence	9110..9669																																																						avrA	ABOCMP010000001.1	94091..94960	99.655	870	0						
GCA_032858465.1_PDT001772203.1_genomic.fna	Salmonella_enterica	0.5214	258.082 KB	5	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	4	aac(6')-Iaa,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	4	Col(pHAD28),ColRNAI,IncI1-I(Alpha),IncQ1	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOCMQ010000001.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322451 SAMN35665084-rid18303053.denovo.01, whole genome shotgun sequence	688922..689359	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	671/804	ABOCMQ010000026.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322451 SAMN35665084-rid18303053.denovo.29, whole genome shotgun sequence	8803..9473	Streptomycin	AF321551	aac(6')-Iaa	98.17	438/438	ABOCMQ010000043.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322451 SAMN35665084-rid18303053.guided.25, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	695/804	ABOCMQ010000046.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322451 SAMN35665084-rid18303053.guided.30, whole genome shotgun sequence	2635..3329	Streptomycin	AF321551	sul2	100	816/816	ABOCMQ010000026.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322451 SAMN35665084-rid18303053.denovo.29, whole genome shotgun sequence	85..900	Sulfamethoxazole	FN995456	sul2	100	816/816	ABOCMQ010000046.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322451 SAMN35665084-rid18303053.guided.30, whole genome shotgun sequence	1759..2574	Sulfamethoxazole	FN995456	tet(A)	99.92	1200/1200	ABOCMQ010000026.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322451 SAMN35665084-rid18303053.denovo.29, whole genome shotgun sequence	6703..7902	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOCMQ010000046.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322451 SAMN35665084-rid18303053.guided.30, whole genome shotgun sequence	4230..5429	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOCMQ010000029.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322451 SAMN35665084-rid18303053.denovo.33, whole genome shotgun sequence	239..369	enterobacteriales	ColRNAI	90.08	131 / 130	ABOCMQ010000031.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322451 SAMN35665084-rid18303053.denovo.35, whole genome shotgun sequence	3981..4111		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOCMQ010000017.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322451 SAMN35665084-rid18303053.denovo.17, whole genome shotgun sequence	84286..84427		enterobacteriales	IncQ1	100	796 / 796	ABOCMQ010000026.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322451 SAMN35665084-rid18303053.denovo.29, whole genome shotgun sequence	2240..3035																																		avrA	ABOCMQ010000002.1	409270..410139	99.425	870	0						
GCA_032858685.1_PDT001771652.1_genomic.fna	Salmonella_enterica	0.5217	181.281 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCNE010000001.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.denovo.01, whole genome shotgun sequence	228930..229367	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOCNE010000037.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.denovo.37, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCNE010000037.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.denovo.37, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOCNE010000052.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.denovo.57, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOCNE010000052.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.denovo.57, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABOCNE010000064.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.guided.48, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCNE010000064.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.guided.48, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOCNE010000067.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.guided.56, whole genome shotgun sequence	1093..2118	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOCNE010000067.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.guided.56, whole genome shotgun sequence	88..864	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOCNE010000071.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.guided.67, whole genome shotgun sequence	56..493	Amikacin, Tobramycin	NC_003197	blaCTX-M-65	100	876/876	ABOCNE010000054.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.denovo.59, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOCNE010000070.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.guided.63, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOCNE010000050.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.denovo.54, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOCNE010000066.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.guided.52, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOCNE010000037.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.denovo.37, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABOCNE010000064.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.guided.48, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOCNE010000037.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.denovo.37, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCNE010000063.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.guided.44, whole genome shotgun sequence	6969..8168	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOCNE010000049.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.denovo.53, whole genome shotgun sequence	2513..2986	Trimethoprim	AF393510	dfrA14	100	474/474	ABOCNE010000068.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.guided.60, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOCNE010000036.1 Salmonella enterica strain 23MD02CG01-S SAMN35664661-rid18313123.denovo.36, whole genome shotgun sequence	23072..23631																																																						avrA	ABOCNE010000003.1	95183..96052	99.655	870	0						
GCA_032858725.1_PDT001771650.1_genomic.fna	Salmonella_enterica	0.521	451.438 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col156	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCNG010000001.1 Salmonella enterica strain 22MD07GT07-S SAMN35664663-rid18328633.denovo.01, whole genome shotgun sequence	501357..501794	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCNG010000031.1 Salmonella enterica strain 22MD07GT07-S SAMN35664663-rid18328633.guided.15, whole genome shotgun sequence	2704..3141	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOCNG010000021.1 Salmonella enterica strain 22MD07GT07-S SAMN35664663-rid18328633.denovo.23, whole genome shotgun sequence	1479..1609	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOCNG010000022.1 Salmonella enterica strain 22MD07GT07-S SAMN35664663-rid18328633.denovo.24, whole genome shotgun sequence	1708..1838		enterobacteriales	Col156	94.81	154 / 154	ABOCNG010000016.1 Salmonella enterica strain 22MD07GT07-S SAMN35664663-rid18328633.denovo.17, whole genome shotgun sequence	792..945																																									avrA	ABOCNG010000004.1	104020..104889	98.966	870	0						
GCA_032859045.1_PDT001771618.1_genomic.fna	Salmonella_enterica	0.523	551.398 KB	3	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOCNW010000002.1 Salmonella enterica strain PNUSAS353869 SAMN35661972-rid18321313.denovo.02, whole genome shotgun sequence	666962..667399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOCNW010000022.1 Salmonella enterica strain PNUSAS353869 SAMN35661972-rid18321313.guided.16, whole genome shotgun sequence	18090..18527	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOCNW010000001.1	140242..141111	99.31	870	0						
GCA_032859145.1_PDT001771607.1_genomic.fna	Salmonella_enterica	0.5223	371.494 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII	aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOCNY010000001.1 Salmonella enterica strain PNUSAS353866 SAMN35661967-rid18313753.denovo.01, whole genome shotgun sequence	995879..996316	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOCNY010000023.1 Salmonella enterica strain PNUSAS353866 SAMN35661967-rid18313753.guided.17, whole genome shotgun sequence	42403..42840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII	99.23	261 / 261	ABOCNY010000014.1 Salmonella enterica strain PNUSAS353866 SAMN35661967-rid18313753.denovo.14, whole genome shotgun sequence	10496..10756																																																						avrA	ABOCNY010000002.1	566919..567788	99.54	870	0						
GCA_032859165.1_PDT001771603.1_genomic.fna	Salmonella_enterica	0.5219	215.934 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCOA010000001.1 Salmonella enterica strain PNUSAS353862 SAMN35661976-rid18304483.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOCOA010000028.1 Salmonella enterica strain PNUSAS353862 SAMN35661976-rid18304483.denovo.28, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCOA010000028.1 Salmonella enterica strain PNUSAS353862 SAMN35661976-rid18304483.denovo.28, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOCOA010000046.1 Salmonella enterica strain PNUSAS353862 SAMN35661976-rid18304483.guided.31, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOCOA010000047.1 Salmonella enterica strain PNUSAS353862 SAMN35661976-rid18304483.guided.33, whole genome shotgun sequence	122..913	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCOA010000047.1 Salmonella enterica strain PNUSAS353862 SAMN35661976-rid18304483.guided.33, whole genome shotgun sequence	122..913	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABOCOA010000018.1 Salmonella enterica strain PNUSAS353862 SAMN35661976-rid18304483.denovo.18, whole genome shotgun sequence	82614..83489	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOCOA010000050.1 Salmonella enterica strain PNUSAS353862 SAMN35661976-rid18304483.guided.42, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABOCOA010000028.1 Salmonella enterica strain PNUSAS353862 SAMN35661976-rid18304483.denovo.28, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABOCOA010000047.1 Salmonella enterica strain PNUSAS353862 SAMN35661976-rid18304483.guided.33, whole genome shotgun sequence	1418..2257	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOCOA010000028.1 Salmonella enterica strain PNUSAS353862 SAMN35661976-rid18304483.denovo.28, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCOA010000047.1 Salmonella enterica strain PNUSAS353862 SAMN35661976-rid18304483.guided.33, whole genome shotgun sequence	14774..15973	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOCOA010000033.1 Salmonella enterica strain PNUSAS353862 SAMN35661976-rid18304483.denovo.35, whole genome shotgun sequence	9109..9668																																																						avrA	ABOCOA010000008.1	95306..96175	99.655	870	0						
GCA_032859205.1_PDT001771601.1_genomic.fna	Salmonella_enterica	0.5226	321.616 KB	6	aroC_222,dnaN_213,hemD_8,hisD_123,purE_225,sucA_180,thrA_205	769	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_222	dnaN	100	100	dnaN_213	hemD	100	100	hemD_8	hisD	100	100	hisD_123	purE	100	100	purE_225	sucA	100	100	sucA_180	thrA	100	100	thrA_205	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOCOD010000001.1 Salmonella enterica strain PNUSAS353874 SAMN35661986-rid18311283.denovo.01, whole genome shotgun sequence	378725..379162	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABOCOD010000044.1 Salmonella enterica strain PNUSAS353874 SAMN35661986-rid18311283.guided.28, whole genome shotgun sequence	19577..20014	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOCOD010000031.1 Salmonella enterica strain PNUSAS353874 SAMN35661986-rid18311283.denovo.34, whole genome shotgun sequence	3687..3815	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOCOD010000035.1 Salmonella enterica strain PNUSAS353874 SAMN35661986-rid18311283.denovo.38, whole genome shotgun sequence	1708..1838																																																avrA	ABOCOD010000010.1	124048..124917	99.425	870	0						
GCA_032859305.1_PDT001771226.1_genomic.fna	Salmonella_enterica	0.5209	56.864 KB	24	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCOG010000057.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309677 SAMN35663995-rid18327653.denovo.057, whole genome shotgun sequence	14067..14504	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCOG010000146.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309677 SAMN35663995-rid18327653.guided.064, whole genome shotgun sequence	14152..14589	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOCOG010000005.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309677 SAMN35663995-rid18327653.denovo.005, whole genome shotgun sequence	17996..18418	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOCOG010000147.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309677 SAMN35663995-rid18327653.guided.075, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014	qnrB19	100	645/645	ABOCOG010000107.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309677 SAMN35663995-rid18327653.denovo.111, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOCOG010000150.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309677 SAMN35663995-rid18327653.guided.113, whole genome shotgun sequence	620..1264	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOCOG010000104.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309677 SAMN35663995-rid18327653.denovo.108, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOCOG010000107.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309677 SAMN35663995-rid18327653.denovo.111, whole genome shotgun sequence	1522..1652		enterobacteriales	Col440I	91.23	114 / 114	ABOCOG010000150.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309677 SAMN35663995-rid18327653.guided.113, whole genome shotgun sequence	3..116																																									avrA	ABOCOG010000038.1	43686..44555	99.195	870	0						
GCA_032859325.1_PDT001771145.1_genomic.fna	Salmonella_enterica	0.5206	86.209 KB	18	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col(pHAD28),Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOCOI010000002.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32309675 SAMN35663992-rid18317423.denovo.002, whole genome shotgun sequence	31680..32117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOCOI010000134.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32309675 SAMN35663992-rid18317423.guided.045, whole genome shotgun sequence	24306..24743	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOCOI010000093.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32309675 SAMN35663992-rid18317423.denovo.096, whole genome shotgun sequence	3134..3264	enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOCOI010000094.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32309675 SAMN35663992-rid18317423.denovo.097, whole genome shotgun sequence	2209..2339		enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOCOI010000096.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32309675 SAMN35663992-rid18317423.denovo.099, whole genome shotgun sequence	557..687		enterobacteriales	Col(pHAD28)	93.8	129 / 131	ABOCOI010000101.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32309675 SAMN35663992-rid18317423.denovo.104, whole genome shotgun sequence	1827..1955		enterobacteriales	Col156	94.81	154 / 154	ABOCOI010000098.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32309675 SAMN35663992-rid18317423.denovo.101, whole genome shotgun sequence	792..945																											avrA	ABOCOI010000037.1	39350..40219	99.54	870	0						
GCA_032859385.1_PDT001771140.1_genomic.fna	Salmonella_enterica	0.5217	87.099 KB	16	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCOK010000023.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309671 SAMN35663994-rid18326103.denovo.23, whole genome shotgun sequence	1562..1999	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCOK010000100.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309671 SAMN35663994-rid18326103.guided.65, whole genome shotgun sequence	14298..14735	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	262 / 262	ABOCOK010000067.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309671 SAMN35663994-rid18326103.denovo.70, whole genome shotgun sequence	7154..7415																																																						avrA	ABOCOK010000038.1	43563..44432	99.54	870	0						
GCA_032859405.1_PDT001771139.1_genomic.fna	Salmonella_enterica	0.5178	65.003 KB	26	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCOM010000038.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309674 SAMN35663991-rid18305603.denovo.038, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCOM010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309674 SAMN35663991-rid18305603.denovo.053, whole genome shotgun sequence	2299..3135	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOCOM010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309674 SAMN35663991-rid18305603.denovo.053, whole genome shotgun sequence	1497..2299	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOCOM010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309674 SAMN35663991-rid18305603.denovo.053, whole genome shotgun sequence	1496..2299	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOCOM010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309674 SAMN35663991-rid18305603.denovo.053, whole genome shotgun sequence	1496..2299	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOCOM010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309674 SAMN35663991-rid18305603.denovo.053, whole genome shotgun sequence	1496..2299	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABOCOM010000185.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309674 SAMN35663991-rid18305603.guided.052, whole genome shotgun sequence	2340..3176	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOCOM010000185.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309674 SAMN35663991-rid18305603.guided.052, whole genome shotgun sequence	1538..2340	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOCOM010000185.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309674 SAMN35663991-rid18305603.guided.052, whole genome shotgun sequence	1537..2340	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOCOM010000185.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309674 SAMN35663991-rid18305603.guided.052, whole genome shotgun sequence	1537..2340	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOCOM010000185.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309674 SAMN35663991-rid18305603.guided.052, whole genome shotgun sequence	1537..2340	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABOCOM010000188.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309674 SAMN35663991-rid18305603.guided.084, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOCOM010000063.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309674 SAMN35663991-rid18305603.denovo.064, whole genome shotgun sequence	22794..23120	enterobacteriales	IncHI2A	99.52	630 / 630	ABOCOM010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309674 SAMN35663991-rid18305603.denovo.120, whole genome shotgun sequence	1569..2198		enterobacteriales	IncX1	100	373 / 373	ABOCOM010000157.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309674 SAMN35663991-rid18305603.denovo.161, whole genome shotgun sequence	1116..1488																																									avrA	ABOCOM010000041.1	39489..40358	99.655	870	0						
GCA_032859485.1_PDT001771133.1_genomic.fna	Salmonella_enterica	0.5226	97.714 KB	14	aroC_45,dnaN_60,hemD_12,hisD_237,purE_193,sucA_2,thrA_96	682	-:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_60	hemD	100	100	hemD_12	hisD	100	100	hisD_237	purE	100	100	purE_193	sucA	100	100	sucA_2	thrA	100	100	thrA_96	-	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOCOP010000008.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS32309637 SAMN35663907-rid18306983.denovo.08, whole genome shotgun sequence	154493..154930	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOCOP010000092.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS32309637 SAMN35663907-rid18306983.guided.46, whole genome shotgun sequence	15878..16315	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOCOP010000005.1	95675..96544	98.851	870	0						
GCA_032859545.1_PDT001771127.1_genomic.fna	Salmonella_enterica	0.5204	61.766 KB	24	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCOS010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309672 SAMN35663891-rid18312843.denovo.021, whole genome shotgun sequence	17268..17705	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCOS010000140.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309672 SAMN35663891-rid18312843.guided.073, whole genome shotgun sequence	2234..2671	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOCOS010000005.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309672 SAMN35663891-rid18312843.denovo.005, whole genome shotgun sequence	17975..18397	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOCOS010000141.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309672 SAMN35663891-rid18312843.guided.085, whole genome shotgun sequence	10423..10845	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCOS010000015.1	81797..82666	99.195	870	0						
GCA_032859695.1_PDT001771101.1_genomic.fna	Salmonella_enterica	0.5146	164.163 KB	10	aroC_33,dnaN_173,hemD_30,hisD_26,purE_141,sucA_275,thrA_28	1256	48:i:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_173	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_141	sucA	100	100	sucA_275	thrA	100	100	thrA_28	48	i	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:i:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCPA010000023.1 Salmonella enterica strain PNUSAS353863 SAMN35661973-rid18319493.denovo.023, whole genome shotgun sequence	77787..78224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOCPA010000114.1 Salmonella enterica strain PNUSAS353863 SAMN35661973-rid18319493.guided.040, whole genome shotgun sequence	4065..4502	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCPA010000019.1	76918..77787	96.552	870	0						
GCA_032859725.1_PDT001771095.1_genomic.fna	Salmonella_enterica	0.5225	405.054 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOCPB010000001.1 Salmonella enterica strain PNUSAS353872 SAMN35661971-rid18322783.denovo.01, whole genome shotgun sequence	666962..667399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOCPB010000027.1 Salmonella enterica strain PNUSAS353872 SAMN35661971-rid18322783.guided.14, whole genome shotgun sequence	42403..42840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOCPB010000003.1	508581..509450	99.31	870	0						
GCA_032859745.1_PDT001771092.1_genomic.fna	Salmonella_enterica	0.5199	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOCPF010000010.1 Salmonella enterica strain PNUSAS353868 SAMN35661966-rid18316293.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOCPF010000054.1 Salmonella enterica strain PNUSAS353868 SAMN35661966-rid18316293.guided.40, whole genome shotgun sequence	9002..9436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032859755.1_PDT001771091.1_genomic.fna	Salmonella_enterica	0.5209	261.84 KB	6	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCPG010000001.1 Salmonella enterica strain PNUSAS353865 SAMN35661968-rid18303023.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCPG010000038.1 Salmonella enterica strain PNUSAS353865 SAMN35661968-rid18303023.guided.27, whole genome shotgun sequence	4864..5301	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOCPG010000020.1 Salmonella enterica strain PNUSAS353865 SAMN35661968-rid18303023.denovo.20, whole genome shotgun sequence	34958..35491																																																						avrA	ABOCPG010000009.1	153640..154509	99.425	870	0						
GCA_032859785.1_PDT001771094.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCPC010000001.1 Salmonella enterica strain PNUSAS353860 SAMN35661970-rid18324443.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCPC010000021.1 Salmonella enterica strain PNUSAS353860 SAMN35661970-rid18324443.guided.15, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCPC010000014.1 Salmonella enterica strain PNUSAS353860 SAMN35661970-rid18324443.denovo.17, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOCPC010000011.1 Salmonella enterica strain PNUSAS353860 SAMN35661970-rid18324443.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABOCPC010000002.1	553636..554505	99.54	870	0						
GCA_032859805.1_PDT001771093.1_genomic.fna	Salmonella_enterica	0.5224	395.506 KB	5	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCPD010000001.1 Salmonella enterica strain PNUSAS353859 SAMN35661969-rid18309783.denovo.01, whole genome shotgun sequence	378840..379277	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCPD010000028.1 Salmonella enterica strain PNUSAS353859 SAMN35661969-rid18309783.guided.22, whole genome shotgun sequence	11287..11724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCPD010000012.1	37718..38587	99.425	870	0						
GCA_032859825.1_PDT001771089.1_genomic.fna	Salmonella_enterica	0.5217	335.607 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOCPH010000001.1 Salmonella enterica strain PNUSAS353861 SAMN35661965-rid18311263.denovo.01, whole genome shotgun sequence	477889..478326	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOCPH010000033.1 Salmonella enterica strain PNUSAS353861 SAMN35661965-rid18311263.guided.20, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCPH010000002.1	145188..146057	99.31	870	0						
GCA_032859905.1_PDT001771075.1_genomic.fna	Salmonella_enterica	0.5216	222.456 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCPL010000005.1 Salmonella enterica strain PNUSAS354196 SAMN35661587-rid18304463.denovo.05, whole genome shotgun sequence	145192..145629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCPL010000087.1 Salmonella enterica strain PNUSAS354196 SAMN35661587-rid18304463.guided.27, whole genome shotgun sequence	20611..21048	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOCPL010000001.1	450786..451655	99.885	870	0						
GCA_032859925.1_PDT001771077.1_genomic.fna	Salmonella_enterica	0.522	258.366 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCPK010000001.1 Salmonella enterica strain PNUSAS354201 SAMN35661598-rid18303003.denovo.01, whole genome shotgun sequence	727905..728342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCPK010000046.1 Salmonella enterica strain PNUSAS354201 SAMN35661598-rid18303003.guided.32, whole genome shotgun sequence	1037..1474	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCPK010000002.1	550636..551505	99.195	870	0						
GCA_032859945.1_PDT001771072.1_genomic.fna	Salmonella_enterica	0.5215	252.805 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCPM010000001.1 Salmonella enterica strain PNUSAS354198 SAMN35661590-rid18327633.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOCPM010000057.1 Salmonella enterica strain PNUSAS354198 SAMN35661590-rid18327633.guided.23, whole genome shotgun sequence	13980..14417	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABOCPM010000047.1 Salmonella enterica strain PNUSAS354198 SAMN35661590-rid18327633.denovo.50, whole genome shotgun sequence	1232..1553																																																						avrA	ABOCPM010000003.1	39430..40299	99.655	870	0						
GCA_032859965.1_PDT001771069.1_genomic.fna	Salmonella_enterica	0.5208	263.859 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCPN010000001.1 Salmonella enterica strain PNUSAS354203 SAMN35661601-rid18317413.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCPN010000043.1 Salmonella enterica strain PNUSAS354203 SAMN35661601-rid18317413.guided.27, whole genome shotgun sequence	5614..6051	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCPN010000019.1	39464..40334	99.196	871	0						
GCA_032860145.1_PDT001771045.1_genomic.fna	Salmonella_enterica	0.5142	270.95 KB	8	aroC_33,dnaN_26,hemD_30,hisD_144,purE_464,sucA_87,thrA_134	1848	61:z52:z53	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_144	purE	100	100	purE_464	sucA	100	100	sucA_87	thrA	100	100	thrA_134	61	z52	z53	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:z52:z53		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCPW010000001.1 Salmonella enterica strain PNUSAS354210 SAMN35661602-rid18305583.denovo.001, whole genome shotgun sequence	96770..97207	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOCPW010000113.1 Salmonella enterica strain PNUSAS354210 SAMN35661602-rid18305583.guided.032, whole genome shotgun sequence	17097..17534	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOCPW010000038.1 Salmonella enterica strain PNUSAS354210 SAMN35661602-rid18305583.denovo.042, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOCPW010000116.1 Salmonella enterica strain PNUSAS354210 SAMN35661602-rid18305583.guided.090, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOCPW010000038.1 Salmonella enterica strain PNUSAS354210 SAMN35661602-rid18305583.denovo.042, whole genome shotgun sequence	1519..1649																																																						avrA	ABOCPW010000006.1	10328..11197	96.437	870	0						
GCA_032860165.1_PDT001771043.1_genomic.fna	Salmonella_enterica	0.5211	296.418 KB	6	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCPX010000007.1 Salmonella enterica strain PNUSAS354209 SAMN35661597-rid18328573.denovo.07, whole genome shotgun sequence	149471..149908	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCPX010000027.1 Salmonella enterica strain PNUSAS354209 SAMN35661597-rid18328573.guided.22, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032860185.1_PDT001771041.1_genomic.fna	Salmonella_enterica	0.5214	177.654 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCPY010000001.1 Salmonella enterica strain PNUSAS354199 SAMN35661594-rid18312803.denovo.01, whole genome shotgun sequence	458966..459403	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOCPY010000041.1 Salmonella enterica strain PNUSAS354199 SAMN35661594-rid18312803.denovo.45, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EU722351	aph(6)-Id	100	837/837	ABOCPY010000045.1 Salmonella enterica strain PNUSAS354199 SAMN35661594-rid18312803.denovo.50, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOCPY010000045.1 Salmonella enterica strain PNUSAS354199 SAMN35661594-rid18312803.denovo.50, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOCPY010000078.1 Salmonella enterica strain PNUSAS354199 SAMN35661594-rid18312803.guided.43, whole genome shotgun sequence	1656..2093	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCPY010000079.1 Salmonella enterica strain PNUSAS354199 SAMN35661594-rid18312803.guided.48, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOCPY010000079.1 Salmonella enterica strain PNUSAS354199 SAMN35661594-rid18312803.guided.48, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOCPY010000080.1 Salmonella enterica strain PNUSAS354199 SAMN35661594-rid18312803.guided.54, whole genome shotgun sequence	147..962	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EU722351	blaTEM-1B	100	861/861	ABOCPY010000052.1 Salmonella enterica strain PNUSAS354199 SAMN35661594-rid18312803.denovo.59, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOCPY010000081.1 Salmonella enterica strain PNUSAS354199 SAMN35661594-rid18312803.guided.58, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOCPY010000045.1 Salmonella enterica strain PNUSAS354199 SAMN35661594-rid18312803.denovo.50, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOCPY010000079.1 Salmonella enterica strain PNUSAS354199 SAMN35661594-rid18312803.guided.48, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOCPY010000037.1 Salmonella enterica strain PNUSAS354199 SAMN35661594-rid18312803.denovo.38, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOCPY010000077.1 Salmonella enterica strain PNUSAS354199 SAMN35661594-rid18312803.guided.40, whole genome shotgun sequence	3335..4540	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																					avrA	ABOCPY010000002.1	434659..435528	99.885	870	0						
GCA_032860205.1_PDT001771033.1_genomic.fna	Salmonella_enterica	0.5215	312.255 KB	5	aroC_654,dnaN_41,hemD_109,hisD_279,purE_2,sucA_100,thrA_126	3301	13:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_654	dnaN	100	100	dnaN_41	hemD	100	100	hemD_109	hisD	100	100	hisD_279	purE	100	100	purE_2	sucA	100	100	sucA_100	thrA	100	100	thrA_126	13	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Diguel or Telelkebir	The predicted serotypes share the same general formula: 13:d:e,n,z15 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOCQA010000003.1 Salmonella enterica strain PNUSAS354195 SAMN35661588-rid18315323.denovo.03, whole genome shotgun sequence	80872..81309	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOCQA010000044.1 Salmonella enterica strain PNUSAS354195 SAMN35661588-rid18315323.guided.30, whole genome shotgun sequence	1719..2156	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCQA010000010.1	39346..40215	99.08	870	0						
GCA_032860225.1_PDT001771037.1_genomic.fna	Salmonella_enterica	0.5221	231.621 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCQB010000002.1 Salmonella enterica strain PNUSAS354204 SAMN35661585-rid18319453.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCQB010000068.1 Salmonella enterica strain PNUSAS354204 SAMN35661585-rid18319453.guided.26, whole genome shotgun sequence	26648..27085	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOCQB010000042.1 Salmonella enterica strain PNUSAS354204 SAMN35661585-rid18319453.denovo.45, whole genome shotgun sequence	1905..2547	enterobacteriales	IncFII(S)	100	262 / 262	ABOCQB010000052.1 Salmonella enterica strain PNUSAS354204 SAMN35661585-rid18319453.denovo.55, whole genome shotgun sequence	620..881																																																avrA	ABOCQB010000001.1	446735..447603	100	869	0						
GCA_032860245.1_PDT001771029.1_genomic.fna	Salmonella_enterica	0.5213	194.58 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		4	Col(MG828),Col(pHAD28),Col440I,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCQD010000001.1 Salmonella enterica strain 23NC05CL01-S SAMN35657431-rid18324413.denovo.01, whole genome shotgun sequence	99685..100122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCQD010000058.1 Salmonella enterica strain 23NC05CL01-S SAMN35657431-rid18324413.guided.38, whole genome shotgun sequence	17217..17654	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABOCQD010000035.1 Salmonella enterica strain 23NC05CL01-S SAMN35657431-rid18324413.denovo.35, whole genome shotgun sequence	27865..28680	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOCQD010000057.1 Salmonella enterica strain 23NC05CL01-S SAMN35657431-rid18324413.guided.37, whole genome shotgun sequence	25082..25897	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOCQD010000028.1 Salmonella enterica strain 23NC05CL01-S SAMN35657431-rid18324413.denovo.28, whole genome shotgun sequence	913..2112	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCQD010000060.1 Salmonella enterica strain 23NC05CL01-S SAMN35657431-rid18324413.guided.42, whole genome shotgun sequence	944..2143	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(MG828)	93.51	262 / 262	ABOCQD010000039.1 Salmonella enterica strain 23NC05CL01-S SAMN35657431-rid18324413.denovo.44, whole genome shotgun sequence	2790..3051	enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOCQD010000040.1 Salmonella enterica strain 23NC05CL01-S SAMN35657431-rid18324413.denovo.45, whole genome shotgun sequence	371..501		enterobacteriales	Col440I	90.35	114 / 114	ABOCQD010000039.1 Salmonella enterica strain 23NC05CL01-S SAMN35657431-rid18324413.denovo.44, whole genome shotgun sequence	4818..4931		enterobacteriales	IncC	100	417 / 417	ABOCQD010000028.1 Salmonella enterica strain 23NC05CL01-S SAMN35657431-rid18324413.denovo.28, whole genome shotgun sequence	43687..44103																																		avrA	ABOCQD010000004.1	131722..132591	99.885	870	0						
GCA_032860285.1_PDT001771039.1_genomic.fna	Salmonella_enterica	0.5206	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCPZ010000002.1 Salmonella enterica strain PNUSAS354205 SAMN35661593-rid18319463.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCPZ010000097.1 Salmonella enterica strain PNUSAS354205 SAMN35661593-rid18319463.guided.31, whole genome shotgun sequence	20997..21434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOCPZ010000047.1 Salmonella enterica strain PNUSAS354205 SAMN35661593-rid18319463.denovo.50, whole genome shotgun sequence	1251..1381	enterobacteriales	IncFIB(S)	100	643 / 643	ABOCPZ010000049.1 Salmonella enterica strain PNUSAS354205 SAMN35661593-rid18319463.denovo.52, whole genome shotgun sequence	1634..2276		enterobacteriales	IncI(Gamma)	97.81	137 / 141	ABOCPZ010000014.1 Salmonella enterica strain PNUSAS354205 SAMN35661593-rid18319463.denovo.14, whole genome shotgun sequence	15125..15261																																									avrA	ABOCPZ010000001.1	401451..402319	100	869	0						
GCA_032860325.1_PDT001771025.1_genomic.fna	Salmonella_enterica	0.5208	276.362 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCQF010000001.1 Salmonella enterica strain 23NC04CL01-S SAMN35019956-rid18315313.denovo.01, whole genome shotgun sequence	369356..369793	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCQF010000047.1 Salmonella enterica strain 23NC04CL01-S SAMN35019956-rid18315313.guided.12, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABOCQF010000027.1 Salmonella enterica strain 23NC04CL01-S SAMN35019956-rid18315313.denovo.30, whole genome shotgun sequence	29579..30394	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOCQF010000049.1 Salmonella enterica strain 23NC04CL01-S SAMN35019956-rid18315313.guided.29, whole genome shotgun sequence	29620..30435	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOCQF010000031.1 Salmonella enterica strain 23NC04CL01-S SAMN35019956-rid18315313.denovo.35, whole genome shotgun sequence	17945..19144	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCQF010000050.1 Salmonella enterica strain 23NC04CL01-S SAMN35019956-rid18315313.guided.34, whole genome shotgun sequence	972..2171	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	93.8	129 / 131	ABOCQF010000036.1 Salmonella enterica strain 23NC04CL01-S SAMN35019956-rid18315313.denovo.41, whole genome shotgun sequence	1835..1963	enterobacteriales	IncC	100	417 / 417	ABOCQF010000028.1 Salmonella enterica strain 23NC04CL01-S SAMN35019956-rid18315313.denovo.31, whole genome shotgun sequence	23618..24034																																																avrA	ABOCQF010000002.1	507414..508283	99.885	870	0						
GCA_032860505.1_PDT001771007.1_genomic.fna	Salmonella_enterica	0.5211	406.403 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCQO010000001.1 Salmonella enterica strain PNUSAS354090 SAMN35652106-rid18319433.denovo.01, whole genome shotgun sequence	821243..821680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.19	420/438	ABOCQO010000028.1 Salmonella enterica strain PNUSAS354090 SAMN35652106-rid18319433.guided.24, whole genome shotgun sequence	1..420	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCQO010000020.1 Salmonella enterica strain PNUSAS354090 SAMN35652106-rid18319433.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOCQO010000021.1 Salmonella enterica strain PNUSAS354090 SAMN35652106-rid18319433.denovo.23, whole genome shotgun sequence	3386..3647																																																avrA	ABOCQO010000002.1	583743..584612	99.54	870	0						
GCA_032860525.1_PDT001771006.1_genomic.fna	Salmonella_enterica	0.5206	406.919 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCQQ010000001.1 Salmonella enterica strain PNUSAS354087 SAMN35652103-rid18319733.denovo.01, whole genome shotgun sequence	857465..857902	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.5	400/438	ABOCQQ010000029.1 Salmonella enterica strain PNUSAS354087 SAMN35652103-rid18319733.guided.29, whole genome shotgun sequence	1..400	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCQQ010000019.1 Salmonella enterica strain PNUSAS354087 SAMN35652103-rid18319733.denovo.20, whole genome shotgun sequence	6805..7447	enterobacteriales	IncFII(S)	100	262 / 262	ABOCQQ010000021.1 Salmonella enterica strain PNUSAS354087 SAMN35652103-rid18319733.denovo.22, whole genome shotgun sequence	3386..3647		enterobacteriales	IncX1	98.93	374 / 374	ABOCQQ010000015.1 Salmonella enterica strain PNUSAS354087 SAMN35652103-rid18319733.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABOCQQ010000002.1	553690..554559	99.54	870	0						
GCA_032860545.1_PDT001771005.1_genomic.fna	Salmonella_enterica	0.5212	49.837 KB	27	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCQP010000013.1 Salmonella enterica strain PNUSAS354118 SAMN35649084-rid18327603.denovo.013, whole genome shotgun sequence	17231..17668	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCQP010000193.1 Salmonella enterica strain PNUSAS354118 SAMN35649084-rid18327603.guided.114, whole genome shotgun sequence	6519..6956	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCQP010000084.1 Salmonella enterica strain PNUSAS354118 SAMN35649084-rid18327603.denovo.085, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOCQP010000084.1 Salmonella enterica strain PNUSAS354118 SAMN35649084-rid18327603.denovo.085, whole genome shotgun sequence	12910..13171		enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABOCQP010000019.1 Salmonella enterica strain PNUSAS354118 SAMN35649084-rid18327603.denovo.019, whole genome shotgun sequence	52642..52963																																									avrA	ABOCQP010000033.1	43561..44430	99.54	870	0						
GCA_032860565.1_PDT001771004.1_genomic.fna	Salmonella_enterica	0.5206	433.54 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCQR010000001.1 Salmonella enterica strain PNUSAS354092 SAMN35652139-rid18312793.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCQR010000027.1 Salmonella enterica strain PNUSAS354092 SAMN35652139-rid18312793.guided.18, whole genome shotgun sequence	2781..3218	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCQR010000018.1 Salmonella enterica strain PNUSAS354092 SAMN35652139-rid18312793.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOCQR010000020.1 Salmonella enterica strain PNUSAS354092 SAMN35652139-rid18312793.denovo.23, whole genome shotgun sequence	3388..3649		enterobacteriales	IncX1	98.93	374 / 374	ABOCQR010000016.1 Salmonella enterica strain PNUSAS354092 SAMN35652139-rid18312793.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABOCQR010000002.1	553696..554565	99.54	870	0						
GCA_032860685.1_PDT001770988.1_genomic.fna	Salmonella_enterica	0.5212	376.338 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCQX010000001.1 Salmonella enterica strain PNUSAS354088 SAMN35652098-rid18305573.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCQX010000031.1 Salmonella enterica strain PNUSAS354088 SAMN35652098-rid18305573.guided.24, whole genome shotgun sequence	2321..2758	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCQX010000022.1 Salmonella enterica strain PNUSAS354088 SAMN35652098-rid18305573.denovo.22, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOCQX010000023.1 Salmonella enterica strain PNUSAS354088 SAMN35652098-rid18305573.denovo.25, whole genome shotgun sequence	3397..3658																																																avrA	ABOCQX010000002.1	585474..586343	99.54	870	0						
GCA_032860705.1_PDT001770986.1_genomic.fna	Salmonella_enterica	0.5213	733.196 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	ColRNAI,ColpVC	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCQY010000001.1 Salmonella enterica strain PNUSAS354049 SAMN35648275-rid18308483.denovo.01, whole genome shotgun sequence	838042..838479	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCQY010000030.1 Salmonella enterica strain PNUSAS354049 SAMN35648275-rid18308483.guided.16, whole genome shotgun sequence	42408..42845	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABOCQY010000023.1 Salmonella enterica strain PNUSAS354049 SAMN35648275-rid18308483.denovo.27, whole genome shotgun sequence	3981..4111	enterobacteriales	ColpVC	98.96	193 / 193	ABOCQY010000024.1 Salmonella enterica strain PNUSAS354049 SAMN35648275-rid18308483.denovo.28, whole genome shotgun sequence	805..997																																																avrA	ABOCQY010000003.1	179972..180841	99.425	870	0						
GCA_032860725.1_PDT001770984.1_genomic.fna	Salmonella_enterica	0.5202	364.176 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCRA010000001.1 Salmonella enterica strain PNUSAS354091 SAMN35652112-rid18317383.denovo.01, whole genome shotgun sequence	477367..477804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCRA010000032.1 Salmonella enterica strain PNUSAS354091 SAMN35652112-rid18317383.guided.25, whole genome shotgun sequence	2705..3142	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCRA010000010.1	140470..141338	99.195	870	0						
GCA_032860735.1_PDT001770987.1_genomic.fna	Salmonella_enterica	0.5219	213.531 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCQZ010000015.1 Salmonella enterica strain PNUSAS354126 SAMN35649083-rid18326063.denovo.15, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCQZ010000049.1 Salmonella enterica strain PNUSAS354126 SAMN35649083-rid18326063.guided.30, whole genome shotgun sequence	32637..33074	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOCQZ010000016.1 Salmonella enterica strain PNUSAS354126 SAMN35649083-rid18326063.denovo.16, whole genome shotgun sequence	48458..49100	enterobacteriales	IncFII(S)	100	262 / 262	ABOCQZ010000016.1 Salmonella enterica strain PNUSAS354126 SAMN35649083-rid18326063.denovo.16, whole genome shotgun sequence	64185..64446																																																avrA	ABOCQZ010000009.1	174769..175637	100	869	0						
GCA_032860765.1_PDT001770982.1_genomic.fna	Salmonella_enterica	0.5162	347.878 KB	6	aroC_33,dnaN_26,hemD_30,hisD_282,purE_229,sucA_87,thrA_28	2374	50:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_282	purE	100	100	purE_229	sucA	100	100	sucA_87	thrA	100	100	thrA_28	50	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 50:r:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOCRB010000012.1 Salmonella enterica strain PNUSAS354047 SAMN35648272-rid18317373.denovo.13, whole genome shotgun sequence	89665..90102	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOCRB010000061.1 Salmonella enterica strain PNUSAS354047 SAMN35648272-rid18317373.guided.33, whole genome shotgun sequence	4409..4846	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCRB010000001.1	559321..560190	96.552	870	0						
GCA_032860785.1_PDT001770983.1_genomic.fna	Salmonella_enterica	0.5205	489.537 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	1	gyrA_p.D87G	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCRC010000001.1 Salmonella enterica strain PNUSAS354054 SAMN35648263-rid18302013.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCRC010000031.1 Salmonella enterica strain PNUSAS354054 SAMN35648263-rid18302013.guided.17, whole genome shotgun sequence	41998..42435	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	ABOCRC010000023.1 Salmonella enterica strain PNUSAS354054 SAMN35648263-rid18302013.denovo.26, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOCRC010000034.1 Salmonella enterica strain PNUSAS354054 SAMN35648263-rid18302013.guided.27, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCRC010000017.1 Salmonella enterica strain PNUSAS354054 SAMN35648263-rid18302013.denovo.18, whole genome shotgun sequence	48112..48754	enterobacteriales	IncFII(S)	100	262 / 262	ABOCRC010000017.1 Salmonella enterica strain PNUSAS354054 SAMN35648263-rid18302013.denovo.18, whole genome shotgun sequence	3859..4120		enterobacteriales	IncX1	95.76	377 / 377	ABOCRC010000018.1 Salmonella enterica strain PNUSAS354054 SAMN35648263-rid18302013.denovo.20, whole genome shotgun sequence	4749..5125																																									avrA	ABOCRC010000002.1	553068..553937	99.54	870	0						
GCA_032860805.1_PDT001770980.1_genomic.fna	Salmonella_enterica	0.5211	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCRD010000001.1 Salmonella enterica strain PNUSAS354094 SAMN35652109-rid18306923.denovo.01, whole genome shotgun sequence	774108..774545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCRD010000025.1 Salmonella enterica strain PNUSAS354094 SAMN35652109-rid18306923.guided.19, whole genome shotgun sequence	7491..7928	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCRD010000017.1 Salmonella enterica strain PNUSAS354094 SAMN35652109-rid18306923.denovo.18, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOCRD010000018.1 Salmonella enterica strain PNUSAS354094 SAMN35652109-rid18306923.denovo.21, whole genome shotgun sequence	3386..3647																																																avrA	ABOCRD010000002.1	553312..554181	99.54	870	0						
GCA_032860825.1_PDT001770978.1_genomic.fna	Salmonella_enterica	0.5223	334.492 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCRE010000001.1 Salmonella enterica strain PNUSAS354119 SAMN35651070-rid18311243.denovo.01, whole genome shotgun sequence	838284..838721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCRE010000026.1 Salmonella enterica strain PNUSAS354119 SAMN35651070-rid18311243.guided.21, whole genome shotgun sequence	14067..14504	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCRE010000002.1	147026..147895	98.966	870	0						
GCA_032860845.1_PDT001770974.1_genomic.fna	Salmonella_enterica	0.5219	380.914 KB	5	aroC_188,dnaN_112,hemD_121,hisD_14,purE_176,sucA_183,thrA_1	590	3,10:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_188	dnaN	100	100	dnaN_112	hemD	100	100	hemD_121	hisD	100	100	hisD_14	purE	100	100	purE_176	sucA	100	100	sucA_183	thrA	100	100	thrA_1	3,10	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Amsterdam		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOCRG010000001.1 Salmonella enterica strain PNUSAS354124 SAMN35651073-rid18312773.denovo.01, whole genome shotgun sequence	592188..592625	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOCRG010000036.1 Salmonella enterica strain PNUSAS354124 SAMN35651073-rid18312773.guided.29, whole genome shotgun sequence	16433..16870	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOCRG010000002.1	546950..547819	98.851	870	0						
GCA_032860865.1_PDT001770976.1_genomic.fna	Salmonella_enterica	0.5198	403.023 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCRF010000002.1 Salmonella enterica strain PNUSAS354038 SAMN35648260-rid18312783.denovo.02, whole genome shotgun sequence	149396..149833	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCRF010000048.1 Salmonella enterica strain PNUSAS354038 SAMN35648260-rid18312783.guided.20, whole genome shotgun sequence	1734..2171	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	92.34	261 / 262	ABOCRF010000016.1 Salmonella enterica strain PNUSAS354038 SAMN35648260-rid18312783.denovo.16, whole genome shotgun sequence	24343..24598																																																																	
GCA_032860885.1_PDT001770972.1_genomic.fna	Salmonella_enterica	0.5222	438.302 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOCRH010000001.1 Salmonella enterica strain PNUSAS354093 SAMN35652100-rid18312763.denovo.01, whole genome shotgun sequence	683911..684348	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOCRH010000028.1 Salmonella enterica strain PNUSAS354093 SAMN35652100-rid18312763.guided.23, whole genome shotgun sequence	2243..2680	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCRH010000002.1	595896..596765	99.77	870	0						
GCA_032860905.1_PDT001770964.1_genomic.fna	Salmonella_enterica	0.5215	407.619 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCRI010000001.1 Salmonella enterica strain PNUSAS354078 SAMN35652105-rid18322763.denovo.01, whole genome shotgun sequence	793148..793585	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOCRI010000032.1 Salmonella enterica strain PNUSAS354078 SAMN35652105-rid18322763.guided.24, whole genome shotgun sequence	2816..3253	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCRI010000001.1	355520..356389	99.655	870	0						
GCA_032860925.1_PDT001770962.1_genomic.fna	Salmonella_enterica	0.5217	257.812 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2*	19*	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	99.8003992015968	100	thrA_2*	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCRK010000001.1 Salmonella enterica strain PNUSAS354120 SAMN35651075-rid18317363.denovo.01, whole genome shotgun sequence	360819..361256	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCRK010000046.1 Salmonella enterica strain PNUSAS354120 SAMN35651075-rid18317363.guided.29, whole genome shotgun sequence	24937..25374	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOCRK010000003.1	174926..175795	99.885	870	0						
GCA_032860945.1_PDT001770956.1_genomic.fna	Salmonella_enterica	0.5208	436.244 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCRL010000001.1 Salmonella enterica strain PNUSAS354098 SAMN35652102-rid18315303.denovo.01, whole genome shotgun sequence	656311..656748	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCRL010000029.1 Salmonella enterica strain PNUSAS354098 SAMN35652102-rid18315303.guided.23, whole genome shotgun sequence	4303..4740	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCRL010000007.1	161972..162840	99.195	870	0						
GCA_032861005.1_PDT001770950.1_genomic.fna	Salmonella_enterica	0.5209	204.124 KB	9	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOCRN010000010.1 Salmonella enterica strain PNUSAS354121 SAMN35651074-rid18319413.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOCRN010000061.1 Salmonella enterica strain PNUSAS354121 SAMN35651074-rid18319413.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032861035.1_PDT001770952.1_genomic.fna	Salmonella_enterica	0.519	222.922 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaOXA-10,blaCTX-M-65,blaOXA-10,floR,cmlA1,floR,cmlA1,qnrS1,qnrS1,qnrS1,ARR-2,ARR-2,tet(B),tet(A),tet(A),tet(B),dfrA14,dfrA14	0		3	IncHI2,IncHI2A,IncQ1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCRO010000001.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.denovo.01, whole genome shotgun sequence	145367..145804	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOCRO010000039.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.denovo.45, whole genome shotgun sequence	731..1522	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCRO010000039.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.denovo.45, whole genome shotgun sequence	731..1522	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABOCRO010000055.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.guided.35, whole genome shotgun sequence	4163..4600	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOCRO010000061.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.guided.48, whole genome shotgun sequence	4332..5123	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCRO010000061.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.guided.48, whole genome shotgun sequence	4332..5123	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABOCRO010000020.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.denovo.20, whole genome shotgun sequence	11601..12476	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaOXA-10	100	801/801	ABOCRO010000039.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.denovo.45, whole genome shotgun sequence	1539..2339	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaCTX-M-65	100	876/876	ABOCRO010000060.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.guided.42, whole genome shotgun sequence	1674..2549	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaOXA-10	100	801/801	ABOCRO010000061.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.guided.48, whole genome shotgun sequence	3515..4315	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	floR	98.19	1214/1215	ABOCRO010000020.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.denovo.20, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.68	1260/1260	ABOCRO010000039.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.denovo.45, whole genome shotgun sequence	2604..3863	Chloramphenicol	M64556	floR	98.19	1214/1215	ABOCRO010000058.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.guided.38, whole genome shotgun sequence	8165..9378	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.68	1260/1260	ABOCRO010000061.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.guided.48, whole genome shotgun sequence	1991..3250	Chloramphenicol	M64556	qnrS1	100	657/657	ABOCRO010000037.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.denovo.43, whole genome shotgun sequence	4952..5608	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOCRO010000058.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.guided.38, whole genome shotgun sequence	1054..1710	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOCRO010000059.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.guided.40, whole genome shotgun sequence	1054..1710	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABOCRO010000039.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.denovo.45, whole genome shotgun sequence	4184..4636	Rifampicin	HQ141279	ARR-2	100	453/453	ABOCRO010000061.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.guided.48, whole genome shotgun sequence	1218..1670	Rifampicin	HQ141279	tet(B)	100	1206/1206	ABOCRO010000042.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.denovo.50, whole genome shotgun sequence	423..1628	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	99.92	1275/1275	ABOCRO010000058.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.guided.38, whole genome shotgun sequence	6290..7564	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1200/1200	ABOCRO010000059.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.guided.40, whole genome shotgun sequence	6365..7564	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABOCRO010000062.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.guided.49, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	ABOCRO010000039.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.denovo.45, whole genome shotgun sequence	183..656	Trimethoprim	KF921535	dfrA14	100	474/474	ABOCRO010000061.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.guided.48, whole genome shotgun sequence	5198..5671	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																													enterobacteriales	IncHI2	100	327 / 327	ABOCRO010000015.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.denovo.15, whole genome shotgun sequence	2412..2738	enterobacteriales	IncHI2A	99.52	630 / 630	ABOCRO010000015.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.denovo.15, whole genome shotgun sequence	18942..19571		enterobacteriales	IncQ1	100	796 / 796	ABOCRO010000036.1 Salmonella enterica strain PNUSAS354051 SAMN35648261-rid18324383.denovo.41, whole genome shotgun sequence	292..1087																																									avrA	ABOCRO010000002.1	434664..435533	99.885	870	0						
GCA_032861065.1_PDT001770954.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCRM010000001.1 Salmonella enterica strain PNUSAS354096 SAMN35652111-rid18320693.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCRM010000027.1 Salmonella enterica strain PNUSAS354096 SAMN35652111-rid18320693.guided.20, whole genome shotgun sequence	11038..11475	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCRM010000018.1 Salmonella enterica strain PNUSAS354096 SAMN35652111-rid18320693.denovo.19, whole genome shotgun sequence	6847..7489	enterobacteriales	IncFII(S)	100	262 / 262	ABOCRM010000020.1 Salmonella enterica strain PNUSAS354096 SAMN35652111-rid18320693.denovo.22, whole genome shotgun sequence	3423..3684																																																avrA	ABOCRM010000002.1	553636..554505	99.54	870	0						
GCA_032861085.1_PDT001770946.1_genomic.fna	Salmonella_enterica	0.5188	329.961 KB	5	aroC_117,dnaN_135,hemD_18,hisD_12,purE_162,sucA_162,thrA_38	543	7:d:l,w	10	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA2,aadA1,blaTEM-1B,blaTEM-1B,cmlA1,cmlA1,cmlA1,qnrS1,qnrS1,sul3,sul3,tet(A),tet(M),tet(A),tet(M),dfrA12,dfrA12	0		3	IncFIA(HI1),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_117	dnaN	100	100	dnaN_135	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_162	sucA	100	100	sucA_162	thrA	100	100	thrA_38	7	d	l,w	Salmonella enterica subspecies enterica (subspecies I)	Livingstone		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOCRP010000001.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.denovo.01, whole genome shotgun sequence	720094..720531	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOCRP010000028.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.denovo.30, whole genome shotgun sequence	1587..2378	Spectinomycin, Streptomycin	JQ414041	aadA2	99.87	792/792	ABOCRP010000028.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.denovo.30, whole genome shotgun sequence	3992..4783	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.26	438/438	ABOCRP010000042.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.guided.19, whole genome shotgun sequence	39408..39845	Amikacin, Tobramycin	NC_003197	aadA2	99.87	792/792	ABOCRP010000045.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.guided.33, whole genome shotgun sequence	1880..2671	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOCRP010000047.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.guided.40, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	blaTEM-1B	100	861/861	ABOCRP010000037.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.denovo.46, whole genome shotgun sequence	145..1005	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOCRP010000050.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.guided.45, whole genome shotgun sequence	1010..1870	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOCRP010000028.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.denovo.30, whole genome shotgun sequence	2471..3730	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOCRP010000045.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.guided.33, whole genome shotgun sequence	2933..4192	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOCRP010000047.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.guided.40, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	qnrS1	100	657/657	ABOCRP010000032.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.denovo.36, whole genome shotgun sequence	129..785	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOCRP010000051.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.guided.48, whole genome shotgun sequence	770..1426	Ciprofloxacin	AB187515	sul3	100	792/792	ABOCRP010000036.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.denovo.44, whole genome shotgun sequence	74..865	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOCRP010000049.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.guided.43, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABOCRP010000033.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.denovo.38, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	ABOCRP010000035.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.denovo.42, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(A)	99.92	1200/1200	ABOCRP010000046.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.guided.37, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	ABOCRP010000048.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.guided.41, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABOCRP010000028.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.denovo.30, whole genome shotgun sequence	5191..5688	Trimethoprim	AM040708	dfrA12	100	498/498	ABOCRP010000045.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.guided.33, whole genome shotgun sequence	975..1472	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																									enterobacteriales	IncFIA(HI1)	100	388 / 388	ABOCRP010000019.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.denovo.20, whole genome shotgun sequence	11420..11807	enterobacteriales	IncHI1A	100	420 / 420	ABOCRP010000015.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.denovo.15, whole genome shotgun sequence	95038..95457		enterobacteriales	IncHI1B(R27)	100	540 / 540	ABOCRP010000015.1 Salmonella enterica strain PNUSAS354055 SAMN35648264-rid18321293.denovo.15, whole genome shotgun sequence	81422..81961	R27																																																			
GCA_032861105.1_PDT001770944.1_genomic.fna	Salmonella_enterica	0.521	336.866 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOCRQ010000003.1 Salmonella enterica strain PNUSAS354061 SAMN35648276-rid18315293.denovo.03, whole genome shotgun sequence	329955..330392	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOCRQ010000038.1 Salmonella enterica strain PNUSAS354061 SAMN35648276-rid18315293.guided.22, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCRQ010000001.1	503275..504144	99.195	870	0						
GCA_032861135.1_PDT001770941.1_genomic.fna	Salmonella_enterica	0.5218	438.41 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_690	3492	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_690	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOCRS010000001.1 Salmonella enterica strain PNUSAS354052 SAMN35648270-rid18301993.denovo.01, whole genome shotgun sequence	177159..177596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOCRS010000027.1 Salmonella enterica strain PNUSAS354052 SAMN35648270-rid18301993.guided.15, whole genome shotgun sequence	31986..32423	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCRS010000002.1	563247..564116	99.77	870	0						
GCA_032861165.1_PDT001770939.1_genomic.fna	Salmonella_enterica	0.5215	259.806 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCRT010000003.1 Salmonella enterica strain PNUSAS354043 SAMN35648273-rid18319723.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCRT010000046.1 Salmonella enterica strain PNUSAS354043 SAMN35648273-rid18319723.guided.19, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOCRT010000016.1 Salmonella enterica strain PNUSAS354043 SAMN35648273-rid18319723.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOCRT010000016.1 Salmonella enterica strain PNUSAS354043 SAMN35648273-rid18319723.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABOCRT010000007.1	174646..175514	100	869	0						
GCA_032861205.1_PDT001770937.1_genomic.fna	Salmonella_enterica	0.5218	376.532 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCRU010000004.1 Salmonella enterica strain PNUSAS354041 SAMN35648267-rid18309743.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCRU010000044.1 Salmonella enterica strain PNUSAS354041 SAMN35648267-rid18309743.guided.24, whole genome shotgun sequence	13793..14230	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOCRU010000014.1 Salmonella enterica strain PNUSAS354041 SAMN35648267-rid18309743.denovo.14, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOCRU010000014.1 Salmonella enterica strain PNUSAS354041 SAMN35648267-rid18309743.denovo.14, whole genome shotgun sequence	30407..30668																																																avrA	ABOCRU010000002.1	401415..402283	100	869	0						
GCA_032861225.1_PDT001770933.1_genomic.fna	Salmonella_enterica	0.5204	158.376 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOCRX010000010.1 Salmonella enterica strain PNUSAS354083 SAMN35652113-rid18304423.denovo.10, whole genome shotgun sequence	29911..30345	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOCRX010000061.1 Salmonella enterica strain PNUSAS354083 SAMN35652113-rid18304423.guided.51, whole genome shotgun sequence	942..1376	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	ABOCRX010000020.1 Salmonella enterica strain PNUSAS354083 SAMN35652113-rid18304423.denovo.20, whole genome shotgun sequence	23493..24367																																																																	
GCA_032861265.1_PDT001770930.1_genomic.fna	Salmonella_enterica	0.5205	453.758 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCRZ010000003.1 Salmonella enterica strain PNUSAS354039 SAMN35648255-rid18327573.denovo.03, whole genome shotgun sequence	149553..149990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCRZ010000020.1 Salmonella enterica strain PNUSAS354039 SAMN35648255-rid18327573.guided.16, whole genome shotgun sequence	8698..9135	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032861275.1_PDT001770931.1_genomic.fna	Salmonella_enterica	0.5211	489.74 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCRY010000001.1 Salmonella enterica strain PNUSAS354044 SAMN35648258-rid18320683.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCRY010000027.1 Salmonella enterica strain PNUSAS354044 SAMN35648258-rid18320683.guided.19, whole genome shotgun sequence	14930..15367	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCRY010000015.1 Salmonella enterica strain PNUSAS354044 SAMN35648258-rid18320683.denovo.16, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABOCRY010000015.1 Salmonella enterica strain PNUSAS354044 SAMN35648258-rid18320683.denovo.16, whole genome shotgun sequence	4078..4339																																																avrA	ABOCRY010000002.1	552782..553651	99.54	870	0						
GCA_032861305.1_PDT001770929.1_genomic.fna	Salmonella_enterica	0.5211	320.954 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCSA010000002.1 Salmonella enterica strain PNUSAS354057 SAMN35648271-rid18309733.denovo.02, whole genome shotgun sequence	288170..288607	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCSA010000027.1 Salmonella enterica strain PNUSAS354057 SAMN35648271-rid18309733.guided.22, whole genome shotgun sequence	1964..2401	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	ABOCSA010000020.1 Salmonella enterica strain PNUSAS354057 SAMN35648271-rid18309733.denovo.23, whole genome shotgun sequence	1417..1570	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCSA010000016.1 Salmonella enterica strain PNUSAS354057 SAMN35648271-rid18309733.denovo.16, whole genome shotgun sequence	36763..37405		enterobacteriales	IncFII(S)	100	262 / 262	ABOCSA010000016.1 Salmonella enterica strain PNUSAS354057 SAMN35648271-rid18309733.denovo.16, whole genome shotgun sequence	42855..43116																																									avrA	ABOCSA010000001.1	553026..553895	99.54	870	0						
GCA_032861325.1_PDT001770927.1_genomic.fna	Salmonella_enterica	0.5219	326.323 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCSB010000001.1 Salmonella enterica strain PNUSAS354059 SAMN35648268-rid18309723.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCSB010000033.1 Salmonella enterica strain PNUSAS354059 SAMN35648268-rid18309723.guided.20, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOCSB010000026.1 Salmonella enterica strain PNUSAS354059 SAMN35648268-rid18309723.denovo.29, whole genome shotgun sequence	547..675																																																						avrA	ABOCSB010000003.1	39438..40307	98.966	870	0						
GCA_032861365.1_PDT001770921.1_genomic.fna	Salmonella_enterica	0.5213	421.823 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncB/O/K/Z,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCSD010000001.1 Salmonella enterica strain PNUSAS354048 SAMN35648274-rid18305553.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCSD010000031.1 Salmonella enterica strain PNUSAS354048 SAMN35648274-rid18305553.guided.20, whole genome shotgun sequence	3526..3963	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncB/O/K/Z	94.74	152 / 151	ABOCSD010000013.1 Salmonella enterica strain PNUSAS354048 SAMN35648274-rid18305553.denovo.13, whole genome shotgun sequence	47339..47489	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCSD010000016.1 Salmonella enterica strain PNUSAS354048 SAMN35648274-rid18305553.denovo.16, whole genome shotgun sequence	49285..49927		enterobacteriales	IncFII(S)	100	262 / 262	ABOCSD010000016.1 Salmonella enterica strain PNUSAS354048 SAMN35648274-rid18305553.denovo.16, whole genome shotgun sequence	5032..5293																																									avrA	ABOCSD010000002.1	553426..554295	99.54	870	0						
GCA_032861385.1_PDT001770922.1_genomic.fna	Salmonella_enterica	0.5213	271.446 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCSF010000003.1 Salmonella enterica strain PNUSAS354058 SAMN35648262-rid18324363.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCSF010000045.1 Salmonella enterica strain PNUSAS354058 SAMN35648262-rid18324363.guided.26, whole genome shotgun sequence	31993..32430	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOCSF010000016.1 Salmonella enterica strain PNUSAS354058 SAMN35648262-rid18324363.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOCSF010000016.1 Salmonella enterica strain PNUSAS354058 SAMN35648262-rid18324363.denovo.16, whole genome shotgun sequence	30407..30668		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOCSF010000018.1 Salmonella enterica strain PNUSAS354058 SAMN35648262-rid18324363.denovo.18, whole genome shotgun sequence	67354..67495																																									avrA	ABOCSF010000005.1	157894..158762	100	869	0						
GCA_032861405.1_PDT001770919.1_genomic.fna	Salmonella_enterica	0.522	385.087 KB	5	aroC_22,dnaN_104,hemD_25,hisD_113,purE_12,sucA_83,thrA_4	308	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_25	hisD	100	100	hisD_113	purE	100	100	purE_12	sucA	100	100	sucA_83	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABOCSE010000001.1 Salmonella enterica strain PNUSAS354042 SAMN35648277-rid18308473.denovo.01, whole genome shotgun sequence	264684..265121	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABOCSE010000032.1 Salmonella enterica strain PNUSAS354042 SAMN35648277-rid18308473.guided.24, whole genome shotgun sequence	15760..16197	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCSE010000003.1	123012..123881	99.655	870	0						
GCA_032861425.1_PDT001770918.1_genomic.fna	Salmonella_enterica	0.5213	213.628 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-IIa,aac(6')-Iaa,aph(3')-IIa,aph(6)-Id,aph(3'')-Ib,floR,floR,qnrB19,qnrB19,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),Col(pHAD28),IncC,IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCSH010000001.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.denovo.01, whole genome shotgun sequence	207029..207466	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOCSH010000031.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.denovo.32, whole genome shotgun sequence	21485..22321	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOCSH010000031.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.denovo.32, whole genome shotgun sequence	20682..21485	Streptomycin	AF321551	aph(3')-IIa	100	795/795	ABOCSH010000039.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.denovo.41, whole genome shotgun sequence	5464..6258	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	aac(6')-Iaa	100	438/438	ABOCSH010000057.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.guided.23, whole genome shotgun sequence	27758..28195	Amikacin, Tobramycin	NC_003197	aph(3')-IIa	100	795/795	ABOCSH010000060.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.guided.45, whole genome shotgun sequence	3346..4140	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	aph(6)-Id	100	837/837	ABOCSH010000062.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.guided.51, whole genome shotgun sequence	2364..3200	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOCSH010000062.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.guided.51, whole genome shotgun sequence	1561..2364	Streptomycin	AF321551	floR	98.19	1214/1215	ABOCSH010000031.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.denovo.32, whole genome shotgun sequence	25457..26670	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOCSH010000061.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.guided.50, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABOCSH010000046.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.denovo.53, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOCSH010000063.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.guided.52, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABOCSH010000031.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.denovo.32, whole genome shotgun sequence	19806..20621	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOCSH010000062.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.guided.51, whole genome shotgun sequence	685..1500	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOCSH010000031.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.denovo.32, whole genome shotgun sequence	23582..24856	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOCSH010000064.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.guided.54, whole genome shotgun sequence	1212..2486	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	Col(pHAD28)	100	131 / 131	ABOCSH010000046.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.denovo.53, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOCSH010000063.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.guided.52, whole genome shotgun sequence	2044..2174		enterobacteriales	IncC	100	417 / 417	ABOCSH010000034.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.denovo.35, whole genome shotgun sequence	3347..3763		enterobacteriales	IncFII(S)	100	262 / 262	ABOCSH010000024.1 Salmonella enterica strain PNUSAS354040 SAMN35648265-rid18301983.denovo.25, whole genome shotgun sequence	1966..2227																																		avrA	ABOCSH010000016.1	95168..96037	99.885	870	0						
GCA_032861485.1_PDT001770903.1_genomic.fna	Salmonella_enterica	0.5227	297.019 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCSJ010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain GT23-0405 SAMN35642773-rid18304403.denovo.01, whole genome shotgun sequence	493726..494163	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCSJ010000034.1 Salmonella enterica subsp. enterica serovar Montevideo strain GT23-0405 SAMN35642773-rid18304403.guided.31, whole genome shotgun sequence	3257..3694	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032861505.1_PDT001770902.1_genomic.fna	Salmonella_enterica	0.5226	470.084 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCSL010000001.1 Salmonella enterica subsp. enterica serovar Braenderup strain GT23-0403 SAMN35642772-rid18326043.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCSL010000032.1 Salmonella enterica subsp. enterica serovar Braenderup strain GT23-0403 SAMN35642772-rid18326043.guided.18, whole genome shotgun sequence	11870..12307	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCSL010000004.1	183123..183992	98.966	870	0						
GCA_032861535.1_PDT001770901.1_genomic.fna	Salmonella_enterica	0.5192	525.919 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	10	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCSM010000001.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.denovo.01, whole genome shotgun sequence	471252..471689	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOCSM010000018.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.denovo.19, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCSM010000018.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.denovo.19, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOCSM010000029.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.denovo.35, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOCSM010000029.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.denovo.35, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOCSM010000036.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.denovo.45, whole genome shotgun sequence	93..908	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	X62115	aadA1	99.75	792/792	ABOCSM010000043.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.guided.24, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOCSM010000043.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.guided.24, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.95	438/438	ABOCSM010000044.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.guided.26, whole genome shotgun sequence	9061..9498	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOCSM010000048.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.guided.36, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOCSM010000048.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.guided.36, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOCSM010000050.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.guided.41, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	X62115	blaCTX-M-65	100	876/876	ABOCSM010000013.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.denovo.13, whole genome shotgun sequence	82669..83544	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOCSM010000049.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.guided.37, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOCSM010000026.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.denovo.30, whole genome shotgun sequence	3320..4533	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOCSM010000046.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.guided.32, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOCSM010000018.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.denovo.19, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOCSM010000043.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.guided.24, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOCSM010000018.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.denovo.19, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOCSM010000043.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.guided.24, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOCSM010000024.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.denovo.28, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOCSM010000047.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.guided.33, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOCSM010000022.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GT23-0393 SAMN35642771-rid18315283.denovo.23, whole genome shotgun sequence	9109..9668																																																						avrA	ABOCSM010000004.1	146437..147306	98.966	870	0						
GCA_032861625.1_PDT001770895.1_genomic.fna	Salmonella_enterica	0.5213	406.326 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCSO010000001.1 Salmonella enterica strain PNUSAS354022 SAMN35642730-rid18319393.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCSO010000024.1 Salmonella enterica strain PNUSAS354022 SAMN35642730-rid18319393.guided.18, whole genome shotgun sequence	16450..16887	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCSO010000015.1 Salmonella enterica strain PNUSAS354022 SAMN35642730-rid18319393.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOCSO010000015.1 Salmonella enterica strain PNUSAS354022 SAMN35642730-rid18319393.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOCSO010000002.1	553626..554495	99.54	870	0						
GCA_032861635.1_PDT001770893.1_genomic.fna	Salmonella_enterica	0.5227	426.319 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(pCoo)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOCSP010000001.1 Salmonella enterica strain PNUSAS354035 SAMN35642722-rid18313723.denovo.01, whole genome shotgun sequence	666959..667396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOCSP010000024.1 Salmonella enterica strain PNUSAS354035 SAMN35642722-rid18313723.guided.16, whole genome shotgun sequence	42402..42839	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(pCoo)	98.09	262 / 262	ABOCSP010000015.1 Salmonella enterica strain PNUSAS354035 SAMN35642722-rid18313723.denovo.15, whole genome shotgun sequence	54523..54784																																																						avrA	ABOCSP010000003.1	557111..557980	99.31	870	0						
GCA_032861665.1_PDT001770891.1_genomic.fna	Salmonella_enterica	0.5219	762.383 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOCSQ010000001.1 Salmonella enterica strain PNUSAS354030 SAMN35642716-rid18306893.denovo.01, whole genome shotgun sequence	299795..300232	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOCSQ010000019.1 Salmonella enterica strain PNUSAS354030 SAMN35642716-rid18306893.guided.15, whole genome shotgun sequence	3368..3805	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOCSQ010000004.1	553696..554565	99.655	870	0						
GCA_032861685.1_PDT001770889.1_genomic.fna	Salmonella_enterica	0.5211	621.836 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOCSR010000001.1 Salmonella enterica strain PNUSAS354015 SAMN35642724-rid18315273.denovo.01, whole genome shotgun sequence	398897..399334	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOCSR010000023.1 Salmonella enterica strain PNUSAS354015 SAMN35642724-rid18315273.guided.17, whole genome shotgun sequence	18525..18962	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCSR010000003.1	526615..527483	99.425	870	0						
GCA_032861705.1_PDT001770887.1_genomic.fna	Salmonella_enterica	0.5213	455.616 KB	5	aroC_5*,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11*	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	99.8003992015968	100	aroC_5*	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCSS010000005.1 Salmonella enterica strain PNUSAS354012 SAMN35642735-rid18319383.denovo.05, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCSS010000026.1 Salmonella enterica strain PNUSAS354012 SAMN35642735-rid18319383.guided.21, whole genome shotgun sequence	1616..2053	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCSS010000014.1 Salmonella enterica strain PNUSAS354012 SAMN35642735-rid18319383.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOCSS010000017.1 Salmonella enterica strain PNUSAS354012 SAMN35642735-rid18319383.denovo.18, whole genome shotgun sequence	3391..3652																																																avrA	ABOCSS010000001.1	585619..586488	99.54	870	0						
GCA_032861725.1_PDT001770885.1_genomic.fna	Salmonella_enterica	0.5207	413.238 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4*	23*	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	99.8003992015968	100	thrA_4*	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCSU010000001.1 Salmonella enterica strain PNUSAS354018 SAMN35642718-rid18313713.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCSU010000021.1 Salmonella enterica strain PNUSAS354018 SAMN35642718-rid18313713.guided.15, whole genome shotgun sequence	2074..2511	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032861745.1_PDT001770883.1_genomic.fna	Salmonella_enterica	0.522	585.709 KB	3	aroC_11,dnaN_10,hemD_25,hisD_42,purE_40,sucA_13,thrA_4	411	4:e,h:e,n,x	3	aac(6')-Iaa,aac(6')-Iaa,blaCMY-27,blaCMY-2,blaCMY-27	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOCST010000001.1 Salmonella enterica strain PNUSAS354014 SAMN35642729-rid18319373.denovo.01, whole genome shotgun sequence	432728..433165	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOCST010000023.1 Salmonella enterica strain PNUSAS354014 SAMN35642729-rid18319373.guided.15, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197	blaCMY-27	100	1146/1146	ABOCST010000018.1 Salmonella enterica strain PNUSAS354014 SAMN35642729-rid18319373.denovo.21, whole genome shotgun sequence	1752..2897	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	EU515250	blaCMY-2	100	1146/1146	ABOCST010000026.1 Salmonella enterica strain PNUSAS354014 SAMN35642729-rid18319373.guided.23, whole genome shotgun sequence	157..1302	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-27	100	1146/1146	ABOCST010000027.1 Salmonella enterica strain PNUSAS354014 SAMN35642729-rid18319373.guided.24, whole genome shotgun sequence	157..1302	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	EU515250																																																																																																																																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOCST010000012.1 Salmonella enterica strain PNUSAS354014 SAMN35642729-rid18319373.denovo.12, whole genome shotgun sequence	72518..72659																																																						avrA	ABOCST010000003.1	150916..151785	99.54	870	0						
GCA_032861765.1_PDT001770881.1_genomic.fna	Salmonella_enterica	0.5205	478.725 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCSV010000001.1 Salmonella enterica strain PNUSAS354037 SAMN35642715-rid18315263.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCSV010000024.1 Salmonella enterica strain PNUSAS354037 SAMN35642715-rid18315263.guided.16, whole genome shotgun sequence	21516..21953	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCSV010000012.1 Salmonella enterica strain PNUSAS354037 SAMN35642715-rid18315263.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOCSV010000016.1 Salmonella enterica strain PNUSAS354037 SAMN35642715-rid18315263.denovo.18, whole genome shotgun sequence	3382..3643		enterobacteriales	IncX1	98.93	374 / 374	ABOCSV010000014.1 Salmonella enterica strain PNUSAS354037 SAMN35642715-rid18315263.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABOCSV010000002.1	553690..554559	99.54	870	0						
GCA_032861815.1_PDT001770877.1_genomic.fna	Salmonella_enterica	0.5223	647.508 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOCSX010000001.1 Salmonella enterica strain PNUSAS354013 SAMN35642717-rid18324353.denovo.01, whole genome shotgun sequence	681984..682421	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOCSX010000021.1 Salmonella enterica strain PNUSAS354013 SAMN35642717-rid18324353.guided.16, whole genome shotgun sequence	1883..2320	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCSX010000003.1	563309..564178	99.77	870	0						
GCA_032861825.1_PDT001770867.1_genomic.fna	Salmonella_enterica	0.5132	339.572 KB	5	aroC_65,dnaN_451,hemD_29,hisD_82,purE_20,sucA_26,thrA_60	2775	48:g,z51:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_65	dnaN	100	100	dnaN_451	hemD	100	100	hemD_29	hisD	100	100	hisD_82	purE	100	100	purE_20	sucA	100	100	sucA_26	thrA	100	100	thrA_60	48	g,z51	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 48:g,z51:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032861855.1_PDT001770879.1_genomic.fna	Salmonella_enterica	0.5218	376.41 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCSW010000002.1 Salmonella enterica strain PNUSAS354024 SAMN35642713-rid18320673.denovo.02, whole genome shotgun sequence	207388..207825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCSW010000045.1 Salmonella enterica strain PNUSAS354024 SAMN35642713-rid18320673.guided.27, whole genome shotgun sequence	1385..1822	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOCSW010000016.1 Salmonella enterica strain PNUSAS354024 SAMN35642713-rid18320673.denovo.16, whole genome shotgun sequence	36049..36691	enterobacteriales	IncFII(S)	100	262 / 262	ABOCSW010000016.1 Salmonella enterica strain PNUSAS354024 SAMN35642713-rid18320673.denovo.16, whole genome shotgun sequence	51776..52037																																																avrA	ABOCSW010000001.1	450798..451667	99.885	870	0						
GCA_032861875.1_PDT001770869.1_genomic.fna	Salmonella_enterica	0.5221	329.173 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOCSZ010000003.1 Salmonella enterica strain PNUSAS353913 SAMN35642700-rid18316263.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOCSZ010000042.1 Salmonella enterica strain PNUSAS353913 SAMN35642700-rid18316263.guided.27, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOCSZ010000020.1 Salmonella enterica strain PNUSAS353913 SAMN35642700-rid18316263.denovo.20, whole genome shotgun sequence	44772..45414	enterobacteriales	IncFII(S)	100	262 / 262	ABOCSZ010000020.1 Salmonella enterica strain PNUSAS353913 SAMN35642700-rid18316263.denovo.20, whole genome shotgun sequence	29426..29687																																																avrA	ABOCSZ010000006.1	155216..156084	100	869	0						
GCA_032861895.1_PDT001770864.1_genomic.fna	Salmonella_enterica	0.5234	61.868 KB	22	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCTB010000053.1 Salmonella enterica strain PNUSAS353892 SAMN35642707-rid18301943.denovo.054, whole genome shotgun sequence	15390..15827	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCTB010000137.1 Salmonella enterica strain PNUSAS353892 SAMN35642707-rid18301943.guided.090, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABOCTB010000098.1 Salmonella enterica strain PNUSAS353892 SAMN35642707-rid18301943.denovo.101, whole genome shotgun sequence	358..488																																																																	
GCA_032861915.1_PDT001770862.1_genomic.fna	Salmonella_enterica	0.5229	525.945 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCTC010000001.1 Salmonella enterica strain PNUSAS354019 SAMN35642721-rid18311213.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOCTC010000025.1 Salmonella enterica strain PNUSAS354019 SAMN35642721-rid18311213.guided.18, whole genome shotgun sequence	14961..15398	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCTC010000003.1	149913..150782	99.655	870	0						
GCA_032861935.1_PDT001770865.1_genomic.fna	Salmonella_enterica	0.5227	356.849 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOCTD010000001.1 Salmonella enterica strain PNUSAS354025 SAMN35642728-rid18324343.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.97	394/438	ABOCTD010000030.1 Salmonella enterica strain PNUSAS354025 SAMN35642728-rid18324343.guided.30, whole genome shotgun sequence	1..394	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCTD010000002.1	149828..150697	99.655	870	0						
GCA_032861975.1_PDT001770857.1_genomic.fna	Salmonella_enterica	0.5192	203.045 KB	7	aroC_25,dnaN_176,hemD_27,hisD_22,purE_18,sucA_67,thrA_91	643	47:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_25	dnaN	100	100	dnaN_176	hemD	100	100	hemD_27	hisD	100	100	hisD_22	purE	100	100	purE_18	sucA	100	100	sucA_67	thrA	100	100	thrA_91	47	b	-	Salmonella enterica subspecies salamae (subspecies II)	II 47:b:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	95.43	438/438	ABOCTF010000003.1 Salmonella enterica strain PNUSAS354034 SAMN35642733-rid18324333.denovo.03, whole genome shotgun sequence	99220..99657	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.43	438/438	ABOCTF010000051.1 Salmonella enterica strain PNUSAS354034 SAMN35642733-rid18324333.guided.34, whole genome shotgun sequence	5903..6340	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032861995.1_PDT001770856.1_genomic.fna	Salmonella_enterica	0.5224	710.442 KB	3	aroC_81,dnaN_283,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	909	7:y:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_283	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,2	Salmonella enterica subspecies enterica (subspecies I)	Richmond		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOCTG010000001.1 Salmonella enterica strain PNUSAS354033 SAMN35642719-rid18304393.denovo.01, whole genome shotgun sequence	145720..146157	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOCTG010000017.1 Salmonella enterica strain PNUSAS354033 SAMN35642719-rid18304393.guided.13, whole genome shotgun sequence	14440..14877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCTG010000003.1	562613..563482	99.31	870	0						
GCA_032862175.1_PDT001737165.2_genomic.fna	Salmonella_enterica	0.5214	489.531 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87G	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCTU010000001.1 Salmonella enterica strain PNUSAS348703 SAMN35123912-rid18313063.denovo.01, whole genome shotgun sequence	808423..808860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCTU010000028.1 Salmonella enterica strain PNUSAS348703 SAMN35123912-rid18313063.guided.22, whole genome shotgun sequence	2767..3204	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCTU010000013.1 Salmonella enterica strain PNUSAS348703 SAMN35123912-rid18313063.denovo.13, whole genome shotgun sequence	40542..41184	enterobacteriales	IncFII(S)	100	262 / 262	ABOCTU010000016.1 Salmonella enterica strain PNUSAS348703 SAMN35123912-rid18313063.denovo.18, whole genome shotgun sequence	3433..3694																																																avrA	ABOCTU010000002.1	140720..141589	99.54	870	0						
GCA_032862195.1_PDT001734721.2_genomic.fna	Salmonella_enterica	0.523	344.871 KB	5	aroC_43,dnaN_41,hemD_16,hisD_13,purE_12,sucA_13,thrA_4	195	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCTQ010000006.1 Salmonella enterica strain PNUSAS348494 SAMN35091235-rid18301603.denovo.06, whole genome shotgun sequence	170337..170774	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCTQ010000027.1 Salmonella enterica strain PNUSAS348494 SAMN35091235-rid18301603.guided.22, whole genome shotgun sequence	4187..4624	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032865215.1_PDT001770081.1_genomic.fna	Salmonella_enterica	0.5214	207.445 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCZM010000001.1 Salmonella enterica strain PNUSAS353886 SAMN35640465-rid18316903.denovo.01, whole genome shotgun sequence	337830..338267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCZM010000054.1 Salmonella enterica strain PNUSAS353886 SAMN35640465-rid18316903.guided.21, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOCZM010000006.1	95312..96180	99.77	870	0						
GCA_032865235.1_PDT001770079.1_genomic.fna	Salmonella_enterica	0.5205	413.269 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOCZN010000001.1 Salmonella enterica strain PNUSAS353882 SAMN35640501-rid18313393.denovo.01, whole genome shotgun sequence	509882..510319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOCZN010000038.1 Salmonella enterica strain PNUSAS353882 SAMN35640501-rid18313393.guided.25, whole genome shotgun sequence	9121..9558	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032865255.1_PDT001770076.1_genomic.fna	Salmonella_enterica	0.5219	331.68 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOCZO010000001.1 Salmonella enterica strain PNUSAS353883 SAMN35640504-rid18325483.denovo.01, whole genome shotgun sequence	399901..400338	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOCZO010000046.1 Salmonella enterica strain PNUSAS353883 SAMN35640504-rid18325483.guided.18, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOCZO010000026.1 Salmonella enterica strain PNUSAS353883 SAMN35640504-rid18325483.denovo.29, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABOCZO010000030.1 Salmonella enterica strain PNUSAS353883 SAMN35640504-rid18325483.denovo.33, whole genome shotgun sequence	2528..2639																																																avrA	ABOCZO010000008.1	94166..95034	99.425	870	0						
GCA_032865275.1_PDT001770073.1_genomic.fna	Salmonella_enterica	0.522	219.452 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOCZQ010000001.1 Salmonella enterica strain PNUSAS353884 SAMN35640503-rid18318513.denovo.01, whole genome shotgun sequence	337830..338267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOCZQ010000047.1 Salmonella enterica strain PNUSAS353884 SAMN35640503-rid18318513.guided.36, whole genome shotgun sequence	814..1251	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOCZQ010000004.1	171578..172446	99.77	870	0						
GCA_032865285.1_PDT001770075.1_genomic.fna	Salmonella_enterica	0.5214	481.167 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCZP010000001.1 Salmonella enterica strain PNUSAS353890 SAMN35640507-rid18312023.denovo.01, whole genome shotgun sequence	182562..182999	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.52	402/438	ABOCZP010000029.1 Salmonella enterica strain PNUSAS353890 SAMN35640507-rid18312023.guided.27, whole genome shotgun sequence	3..404	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCZP010000012.1 Salmonella enterica strain PNUSAS353890 SAMN35640507-rid18312023.denovo.12, whole genome shotgun sequence	37065..37707	enterobacteriales	IncFII(S)	100	262 / 262	ABOCZP010000018.1 Salmonella enterica strain PNUSAS353890 SAMN35640507-rid18312023.denovo.19, whole genome shotgun sequence	3373..3634																																																avrA	ABOCZP010000003.1	505461..506330	99.54	870	0						
GCA_032865315.1_PDT001770072.1_genomic.fna	Salmonella_enterica	0.5146	218.246 KB	5	aroC_225,dnaN_25,hemD_29,hisD_56,purE_232,sucA_209,thrA_78	775	56:z4,z23:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_225	dnaN	100	100	dnaN_25	hemD	100	100	hemD_29	hisD	100	100	hisD_56	purE	100	100	purE_232	sucA	100	100	sucA_209	thrA	100	100	thrA_78	56	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 56:z4,z23:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032865355.1_PDT001770071.1_genomic.fna	Salmonella_enterica	0.5222	285.381 KB	7	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOCZS010000001.1 Salmonella enterica strain PNUSAS353885 SAMN35640506-rid18312013.denovo.01, whole genome shotgun sequence	399901..400338	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOCZS010000048.1 Salmonella enterica strain PNUSAS353885 SAMN35640506-rid18312013.guided.25, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOCZS010000008.1	94166..95034	99.425	870	0						
GCA_032865415.1_PDT001770032.1_genomic.fna	Salmonella_enterica	0.5206	246.374 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCZZ010000001.1 Salmonella enterica strain PNUSAS349103 SAMN35639195-rid18303793.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.29	431/438	ABOCZZ010000037.1 Salmonella enterica strain PNUSAS349103 SAMN35639195-rid18303793.guided.33, whole genome shotgun sequence	1..431	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCZZ010000025.1 Salmonella enterica strain PNUSAS349103 SAMN35639195-rid18303793.denovo.25, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOCZZ010000027.1 Salmonella enterica strain PNUSAS349103 SAMN35639195-rid18303793.denovo.29, whole genome shotgun sequence	3400..3661		enterobacteriales	IncX1	98.94	377 / 377	ABOCZZ010000021.1 Salmonella enterica strain PNUSAS349103 SAMN35639195-rid18303793.denovo.21, whole genome shotgun sequence	34902..35278																																									avrA	ABOCZZ010000002.1	174837..175706	99.54	870	0						
GCA_032865435.1_PDT001770051.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOCZW010000001.1 Salmonella enterica strain PNUSAS353839 SAMN35639708-rid18322043.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOCZW010000027.1 Salmonella enterica strain PNUSAS353839 SAMN35639708-rid18322043.guided.18, whole genome shotgun sequence	4233..4670	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOCZW010000017.1 Salmonella enterica strain PNUSAS353839 SAMN35639708-rid18322043.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOCZW010000018.1 Salmonella enterica strain PNUSAS353839 SAMN35639708-rid18322043.denovo.21, whole genome shotgun sequence	3404..3665																																																avrA	ABOCZW010000002.1	553641..554510	99.54	870	0						
GCA_032865555.1_PDT001770009.1_genomic.fna	Salmonella_enterica	0.5217	343.696 KB	5	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODAC010000001.1 Salmonella enterica strain PNUSAS353817 SAMN35638540-rid18326983.denovo.01, whole genome shotgun sequence	586810..587247	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODAC010000029.1 Salmonella enterica strain PNUSAS353817 SAMN35638540-rid18326983.guided.21, whole genome shotgun sequence	10317..10754	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032866355.1_PDT001948132.1_genomic.fna	Salmonella_enterica	0.5228	320.222 KB	6	aroC_42,dnaN_11,hemD_48,hisD_149,purE_12,sucA_13,thrA_4	1575	11:r:e,n,x	3	aac(6')-Iaa,aac(6')-Iaa,sul1,sul1,dfrA5,dfrA5	1	parC_p.T57S	1	IncB/O/K/Z	aroC	100	100	aroC_42	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODBH010000001.1 Salmonella enterica strain PNUSAS393454 SAMN37883213-rid19908183.denovo.01, whole genome shotgun sequence	37897..38334	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODBH010000032.1 Salmonella enterica strain PNUSAS393454 SAMN37883213-rid19908183.guided.21, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABODBH010000016.1 Salmonella enterica strain PNUSAS393454 SAMN37883213-rid19908183.denovo.16, whole genome shotgun sequence	32635..33474	Sulfamethoxazole	U12338	sul1	100	840/840	ABODBH010000034.1 Salmonella enterica strain PNUSAS393454 SAMN37883213-rid19908183.guided.25, whole genome shotgun sequence	3768..4607	Sulfamethoxazole	U12338	dfrA5	100	474/474	ABODBH010000016.1 Salmonella enterica strain PNUSAS393454 SAMN37883213-rid19908183.denovo.16, whole genome shotgun sequence	33999..34472	Trimethoprim	X12868	dfrA5	100	474/474	ABODBH010000034.1 Salmonella enterica strain PNUSAS393454 SAMN37883213-rid19908183.guided.25, whole genome shotgun sequence	2770..3243	Trimethoprim	X12868																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncB/O/K/Z	94.08	152 / 151	ABODBH010000016.1 Salmonella enterica strain PNUSAS393454 SAMN37883213-rid19908183.denovo.16, whole genome shotgun sequence	44571..44722																																																																	
GCA_032866365.1_PDT001948122.1_genomic.fna	Salmonella_enterica	0.522	762.435 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODBI010000001.1 Salmonella enterica strain PNUSAS393433 SAMN37883101-rid19908123.denovo.01, whole genome shotgun sequence	482123..482560	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABODBI010000016.1 Salmonella enterica strain PNUSAS393433 SAMN37883101-rid19908123.guided.13, whole genome shotgun sequence	7733..8170	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODBI010000004.1	553658..554527	99.655	870	0						
GCA_032866395.1_PDT001948131.1_genomic.fna	Salmonella_enterica	0.5211	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODBJ010000001.1 Salmonella enterica strain PNUSAS393170 SAMN37883116-rid19908173.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODBJ010000028.1 Salmonella enterica strain PNUSAS393170 SAMN37883116-rid19908173.guided.16, whole genome shotgun sequence	36062..36499	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODBJ010000019.1 Salmonella enterica strain PNUSAS393170 SAMN37883116-rid19908173.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABODBJ010000021.1 Salmonella enterica strain PNUSAS393170 SAMN37883116-rid19908173.denovo.24, whole genome shotgun sequence	3390..3651																																																avrA	ABODBJ010000002.1	553636..554505	99.54	870	0						
GCA_032866405.1_PDT001948120.1_genomic.fna	Salmonella_enterica	0.5206	697.052 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODBL010000001.1 Salmonella enterica strain PNUSAS393445 SAMN37883186-rid19908963.denovo.01, whole genome shotgun sequence	1246242..1246679	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODBL010000023.1 Salmonella enterica strain PNUSAS393445 SAMN37883186-rid19908963.guided.16, whole genome shotgun sequence	14291..14728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODBL010000006.1	146578..147446	99.425	870	0						
GCA_032866435.1_PDT001948130.1_genomic.fna	Salmonella_enterica	0.5214	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODBK010000001.1 Salmonella enterica strain PNUSAS393421 SAMN37883107-rid19909003.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODBK010000023.1 Salmonella enterica strain PNUSAS393421 SAMN37883107-rid19909003.guided.16, whole genome shotgun sequence	304..741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODBK010000012.1 Salmonella enterica strain PNUSAS393421 SAMN37883107-rid19909003.denovo.12, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABODBK010000017.1 Salmonella enterica strain PNUSAS393421 SAMN37883107-rid19909003.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABODBK010000002.1	553636..554505	99.54	870	0						
GCA_032866455.1_PDT001948123.1_genomic.fna	Salmonella_enterica	0.5219	728.287 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODBM010000001.1 Salmonella enterica strain PNUSAS393173 SAMN37883110-rid19908973.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABODBM010000026.1 Salmonella enterica strain PNUSAS393173 SAMN37883110-rid19908973.guided.15, whole genome shotgun sequence	5890..6327	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODBM010000003.1	553291..554160	99.655	870	0						
GCA_032866465.1_PDT001948129.1_genomic.fna	Salmonella_enterica	0.5214	412.066 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODBO010000001.1 Salmonella enterica strain PNUSAS393442 SAMN37883189-rid19908163.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODBO010000035.1 Salmonella enterica strain PNUSAS393442 SAMN37883189-rid19908163.guided.24, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODBO010000002.1	504322..505192	99.196	871	0						
GCA_032866475.1_PDT001948116.1_genomic.fna	Salmonella_enterica	0.5228	746.974 KB	3	aroC_162,dnaN_475,hemD_387,hisD_604,purE_517,sucA_6,thrA_16	2194	13:b:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_162	dnaN	100	100	dnaN_475	hemD	100	100	hemD_387	hisD	100	100	hisD_604	purE	100	100	purE_517	sucA	100	100	sucA_6	thrA	100	100	thrA_16	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABODBV010000001.1 Salmonella enterica strain PNUSAS393456 SAMN37883215-rid19908083.denovo.01, whole genome shotgun sequence	433743..434180	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABODBV010000021.1 Salmonella enterica strain PNUSAS393456 SAMN37883215-rid19908083.guided.14, whole genome shotgun sequence	2758..3195	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABODBV010000014.1 Salmonella enterica strain PNUSAS393456 SAMN37883215-rid19908083.denovo.17, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABODBV010000023.1 Salmonella enterica strain PNUSAS393456 SAMN37883215-rid19908083.guided.18, whole genome shotgun sequence	739..1383	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABODBV010000014.1 Salmonella enterica strain PNUSAS393456 SAMN37883215-rid19908083.denovo.17, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABODBV010000015.1 Salmonella enterica strain PNUSAS393456 SAMN37883215-rid19908083.denovo.19, whole genome shotgun sequence	547..675		enterobacteriales	Col(pHAD28)	100	131 / 131	ABODBV010000023.1 Salmonella enterica strain PNUSAS393456 SAMN37883215-rid19908083.guided.18, whole genome shotgun sequence	83..213																																									avrA	ABODBV010000004.1	593606..594475	98.966	870	0						
GCA_032866515.1_PDT001948119.1_genomic.fna	Salmonella_enterica	0.5204	741.171 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODBP010000001.1 Salmonella enterica strain PNUSAS393451 SAMN37883216-rid19908103.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODBP010000016.1 Salmonella enterica strain PNUSAS393451 SAMN37883216-rid19908103.guided.13, whole genome shotgun sequence	853..1290	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032866525.1_PDT001948121.1_genomic.fna	Salmonella_enterica	0.5207	430.002 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODBN010000001.1 Salmonella enterica strain PNUSAS393447 SAMN37883183-rid19908113.denovo.01, whole genome shotgun sequence	605831..606268	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODBN010000027.1 Salmonella enterica strain PNUSAS393447 SAMN37883183-rid19908113.guided.16, whole genome shotgun sequence	42345..42782	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODBN010000009.1	140075..140943	99.195	870	0						
GCA_032866555.1_PDT001948107.1_genomic.fna	Salmonella_enterica	0.5232	320.428 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODBT010000001.1 Salmonella enterica strain PNUSAS393438 SAMN37883187-rid19908033.denovo.01, whole genome shotgun sequence	493971..494408	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODBT010000032.1 Salmonella enterica strain PNUSAS393438 SAMN37883187-rid19908033.guided.25, whole genome shotgun sequence	2998..3435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032866565.1_PDT001948110.1_genomic.fna	Salmonella_enterica	0.5224	397.647 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODBQ010000001.1 Salmonella enterica strain PNUSAS393439 SAMN37883190-rid19908923.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODBQ010000028.1 Salmonella enterica strain PNUSAS393439 SAMN37883190-rid19908923.guided.13, whole genome shotgun sequence	34130..34567	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODBQ010000002.1	150017..150886	99.655	870	0						
GCA_032866595.1_PDT001948115.1_genomic.fna	Salmonella_enterica	0.5225	393.489 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODBR010000003.1 Salmonella enterica strain PNUSAS393452 SAMN37883218-rid19908943.denovo.03, whole genome shotgun sequence	170246..170683	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODBR010000035.1 Salmonella enterica strain PNUSAS393452 SAMN37883218-rid19908943.guided.22, whole genome shotgun sequence	16168..16605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032866615.1_PDT001948101.1_genomic.fna	Salmonella_enterica	0.5221	758.753 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODBW010000001.1 Salmonella enterica strain PNUSAS393423 SAMN37883108-rid19907993.denovo.01, whole genome shotgun sequence	482130..482567	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABODBW010000022.1 Salmonella enterica strain PNUSAS393423 SAMN37883108-rid19907993.guided.15, whole genome shotgun sequence	486..923	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODBW010000004.1	553698..554567	99.655	870	0						
GCA_032866635.1_PDT001948104.1_genomic.fna	Salmonella_enterica	0.5217	696.12 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODBS010000001.1 Salmonella enterica strain PNUSAS393436 SAMN37883188-rid19908013.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODBS010000025.1 Salmonella enterica strain PNUSAS393436 SAMN37883188-rid19908013.guided.11, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032866655.1_PDT001948092.1_genomic.fna	Salmonella_enterica	0.5209	592.618 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODBY010000001.1 Salmonella enterica strain PNUSAS393424 SAMN37883106-rid19907943.denovo.01, whole genome shotgun sequence	398384..398821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODBY010000026.1 Salmonella enterica strain PNUSAS393424 SAMN37883106-rid19907943.guided.16, whole genome shotgun sequence	18181..18618	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODBY010000003.1	496416..497284	99.425	870	0						
GCA_032866675.1_PDT001948094.1_genomic.fna	Salmonella_enterica	0.5211	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODBU010000001.1 Salmonella enterica strain PNUSAS393169 SAMN37883115-rid19907953.denovo.01, whole genome shotgun sequence	774368..774805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODBU010000024.1 Salmonella enterica strain PNUSAS393169 SAMN37883115-rid19907953.guided.17, whole genome shotgun sequence	21890..22327	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODBU010000017.1 Salmonella enterica strain PNUSAS393169 SAMN37883115-rid19907953.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABODBU010000018.1 Salmonella enterica strain PNUSAS393169 SAMN37883115-rid19907953.denovo.21, whole genome shotgun sequence	3395..3656																																																avrA	ABODBU010000002.1	553636..554505	99.54	870	0						
GCA_032866695.1_PDT001948089.1_genomic.fna	Salmonella_enterica	0.5217	376.483 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODCA010000004.1 Salmonella enterica strain PNUSAS393431 SAMN37883102-rid19907913.denovo.04, whole genome shotgun sequence	68379..68816	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODCA010000044.1 Salmonella enterica strain PNUSAS393431 SAMN37883102-rid19907913.guided.24, whole genome shotgun sequence	31460..31897	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABODCA010000014.1 Salmonella enterica strain PNUSAS393431 SAMN37883102-rid19907913.denovo.14, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABODCA010000014.1 Salmonella enterica strain PNUSAS393431 SAMN37883102-rid19907913.denovo.14, whole genome shotgun sequence	30407..30668																																																avrA	ABODCA010000001.1	451700..452568	100	869	0						
GCA_032866715.1_PDT001948085.1_genomic.fna	Salmonella_enterica	0.5211	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODBZ010000001.1 Salmonella enterica strain PNUSAS393166 SAMN37883015-rid19908823.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODBZ010000024.1 Salmonella enterica strain PNUSAS393166 SAMN37883015-rid19908823.guided.13, whole genome shotgun sequence	36782..37219	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODBZ010000016.1 Salmonella enterica strain PNUSAS393166 SAMN37883015-rid19908823.denovo.19, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABODBZ010000017.1 Salmonella enterica strain PNUSAS393166 SAMN37883015-rid19908823.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABODBZ010000002.1	553499..554368	99.54	870	0						
GCA_032866735.1_PDT001948078.1_genomic.fna	Salmonella_enterica	0.5214	375.692 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODCB010000001.1 Salmonella enterica strain PNUSAS393163 SAMN37883012-rid19908783.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODCB010000033.1 Salmonella enterica strain PNUSAS393163 SAMN37883012-rid19908783.guided.28, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODCB010000022.1 Salmonella enterica strain PNUSAS393163 SAMN37883012-rid19908783.denovo.23, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABODCB010000024.1 Salmonella enterica strain PNUSAS393163 SAMN37883012-rid19908783.denovo.25, whole genome shotgun sequence	3392..3653																																																avrA	ABODCB010000002.1	553636..554505	99.54	870	0						
GCA_032866745.1_PDT001948081.1_genomic.fna	Salmonella_enterica	0.5214	497.992 KB	3	aroC_157,dnaN_142,hemD_49,hisD_16,purE_40,sucA_35,thrA_3	505	4:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_157	dnaN	100	100	dnaN_142	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_3	4	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Bredeney		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABODBX010000001.1 Salmonella enterica strain PNUSAS393154 SAMN37883002-rid19908803.denovo.01, whole genome shotgun sequence	655319..655756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABODBX010000023.1 Salmonella enterica strain PNUSAS393154 SAMN37883002-rid19908803.guided.16, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032866775.1_PDT001948077.1_genomic.fna	Salmonella_enterica	0.5218	360.47 KB	5	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	4	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),ColRNAI,IncQ1	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABODCC010000001.1 Salmonella enterica strain PNUSAS393167 SAMN37883016-rid19907863.denovo.01, whole genome shotgun sequence	779763..780200	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	671/804	ABODCC010000022.1 Salmonella enterica strain PNUSAS393167 SAMN37883016-rid19907863.denovo.22, whole genome shotgun sequence	8803..9473	Streptomycin	AF321551	aph(3'')-Ib	100	695/804	ABODCC010000032.1 Salmonella enterica strain PNUSAS393167 SAMN37883016-rid19907863.guided.24, whole genome shotgun sequence	1216..1910	Streptomycin	AF321551	aac(6')-Iaa	98.17	438/438	ABODCC010000034.1 Salmonella enterica strain PNUSAS393167 SAMN37883016-rid19907863.guided.29, whole genome shotgun sequence	2238..2675	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABODCC010000022.1 Salmonella enterica strain PNUSAS393167 SAMN37883016-rid19907863.denovo.22, whole genome shotgun sequence	85..900	Sulfamethoxazole	FN995456	sul2	100	816/816	ABODCC010000032.1 Salmonella enterica strain PNUSAS393167 SAMN37883016-rid19907863.guided.24, whole genome shotgun sequence	340..1155	Sulfamethoxazole	FN995456	tet(A)	99.92	1200/1200	ABODCC010000022.1 Salmonella enterica strain PNUSAS393167 SAMN37883016-rid19907863.denovo.22, whole genome shotgun sequence	6703..7902	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABODCC010000032.1 Salmonella enterica strain PNUSAS393167 SAMN37883016-rid19907863.guided.24, whole genome shotgun sequence	2811..4010	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABODCC010000023.1 Salmonella enterica strain PNUSAS393167 SAMN37883016-rid19907863.denovo.26, whole genome shotgun sequence	239..369	enterobacteriales	ColRNAI	90.08	131 / 130	ABODCC010000025.1 Salmonella enterica strain PNUSAS393167 SAMN37883016-rid19907863.denovo.28, whole genome shotgun sequence	3981..4111		enterobacteriales	IncQ1	100	796 / 796	ABODCC010000022.1 Salmonella enterica strain PNUSAS393167 SAMN37883016-rid19907863.denovo.22, whole genome shotgun sequence	2240..3035																																									avrA	ABODCC010000002.1	409478..410347	99.425	870	0						
GCA_032866795.1_PDT001948072.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODCD010000001.1 Salmonella enterica strain PNUSAS393158 SAMN37883006-rid19907843.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODCD010000028.1 Salmonella enterica strain PNUSAS393158 SAMN37883006-rid19907843.guided.24, whole genome shotgun sequence	2921..3358	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODCD010000020.1 Salmonella enterica strain PNUSAS393158 SAMN37883006-rid19907843.denovo.20, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABODCD010000021.1 Salmonella enterica strain PNUSAS393158 SAMN37883006-rid19907843.denovo.21, whole genome shotgun sequence	3436..3697																																																avrA	ABODCD010000002.1	553636..554505	99.54	870	0						
GCA_032866815.1_PDT001948071.1_genomic.fna	Salmonella_enterica	0.5212	405.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODCE010000001.1 Salmonella enterica strain PNUSAS393387 SAMN37882784-rid19908743.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODCE010000026.1 Salmonella enterica strain PNUSAS393387 SAMN37882784-rid19908743.guided.20, whole genome shotgun sequence	4035..4472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODCE010000019.1 Salmonella enterica strain PNUSAS393387 SAMN37882784-rid19908743.denovo.22, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABODCE010000020.1 Salmonella enterica strain PNUSAS393387 SAMN37882784-rid19908743.denovo.23, whole genome shotgun sequence	3398..3659																																																avrA	ABODCE010000002.1	553635..554504	99.54	870	0						
GCA_032866835.1_PDT001948069.1_genomic.fna	Salmonella_enterica	0.5206	437.248 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI1-I(Alpha),pSL483	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODCF010000001.1 Salmonella enterica strain PNUSAS393385 SAMN37882783-rid19907833.denovo.01, whole genome shotgun sequence	454798..455235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODCF010000034.1 Salmonella enterica strain PNUSAS393385 SAMN37882783-rid19907833.guided.24, whole genome shotgun sequence	11905..12342	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABODCF010000015.1 Salmonella enterica strain PNUSAS393385 SAMN37882783-rid19907833.denovo.15, whole genome shotgun sequence	70891..71032	enterobacteriales	pSL483	99.7	995 / 995	ABODCF010000019.1 Salmonella enterica strain PNUSAS393385 SAMN37882783-rid19907833.denovo.19, whole genome shotgun sequence	22339..23333																																																avrA	ABODCF010000008.1	39350..40219	98.966	870	0						
GCA_032866855.1_PDT001948068.1_genomic.fna	Salmonella_enterica	0.5219	714.483 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODCG010000004.1 Salmonella enterica strain PNUSAS393396 SAMN37882781-rid19908723.denovo.04, whole genome shotgun sequence	140326..140763	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODCG010000018.1 Salmonella enterica strain PNUSAS393396 SAMN37882781-rid19908723.denovo.22, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABODCG010000018.1 Salmonella enterica strain PNUSAS393396 SAMN37882781-rid19908723.denovo.22, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABODCG010000018.1 Salmonella enterica strain PNUSAS393396 SAMN37882781-rid19908723.denovo.22, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABODCG010000018.1 Salmonella enterica strain PNUSAS393396 SAMN37882781-rid19908723.denovo.22, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABODCG010000018.1 Salmonella enterica strain PNUSAS393396 SAMN37882781-rid19908723.denovo.22, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABODCG010000033.1 Salmonella enterica strain PNUSAS393396 SAMN37882781-rid19908723.guided.16, whole genome shotgun sequence	8093..8530	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODCG010000036.1 Salmonella enterica strain PNUSAS393396 SAMN37882781-rid19908723.guided.21, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABODCG010000036.1 Salmonella enterica strain PNUSAS393396 SAMN37882781-rid19908723.guided.21, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABODCG010000036.1 Salmonella enterica strain PNUSAS393396 SAMN37882781-rid19908723.guided.21, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABODCG010000036.1 Salmonella enterica strain PNUSAS393396 SAMN37882781-rid19908723.guided.21, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABODCG010000036.1 Salmonella enterica strain PNUSAS393396 SAMN37882781-rid19908723.guided.21, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABODCG010000019.1 Salmonella enterica strain PNUSAS393396 SAMN37882781-rid19908723.denovo.23, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABODCG010000037.1 Salmonella enterica strain PNUSAS393396 SAMN37882781-rid19908723.guided.24, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABODCG010000016.1 Salmonella enterica strain PNUSAS393396 SAMN37882781-rid19908723.denovo.17, whole genome shotgun sequence	2208..2349																																																						avrA	ABODCG010000003.1	573274..574143	99.655	870	0						
GCA_032866875.1_PDT001948062.1_genomic.fna	Salmonella_enterica	0.5214	477.515 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODCM010000001.1 Salmonella enterica strain PNUSAS393400 SAMN37882777-rid19907803.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODCM010000022.1 Salmonella enterica strain PNUSAS393400 SAMN37882777-rid19907803.guided.13, whole genome shotgun sequence	32238..32675	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODCM010000016.1 Salmonella enterica strain PNUSAS393400 SAMN37882777-rid19907803.denovo.17, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABODCM010000017.1 Salmonella enterica strain PNUSAS393400 SAMN37882777-rid19907803.denovo.19, whole genome shotgun sequence	3392..3653																																																avrA	ABODCM010000002.1	553636..554505	99.54	870	0						
GCA_032866895.1_PDT001948061.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODCI010000001.1 Salmonella enterica strain PNUSAS393399 SAMN37882778-rid19908683.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODCI010000026.1 Salmonella enterica strain PNUSAS393399 SAMN37882778-rid19908683.guided.19, whole genome shotgun sequence	19051..19488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODCI010000015.1 Salmonella enterica strain PNUSAS393399 SAMN37882778-rid19908683.denovo.15, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABODCI010000020.1 Salmonella enterica strain PNUSAS393399 SAMN37882778-rid19908683.denovo.22, whole genome shotgun sequence	3390..3651																																																avrA	ABODCI010000002.1	553635..554504	99.54	870	0						
GCA_032866915.1_PDT001948060.1_genomic.fna	Salmonella_enterica	0.5221	273.328 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODCJ010000002.1 Salmonella enterica strain PNUSAS393401 SAMN37882775-rid19908673.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODCJ010000039.1 Salmonella enterica strain PNUSAS393401 SAMN37882775-rid19908673.guided.28, whole genome shotgun sequence	5493..5930	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABODCJ010000017.1 Salmonella enterica strain PNUSAS393401 SAMN37882775-rid19908673.denovo.17, whole genome shotgun sequence	6816..7458	enterobacteriales	IncFII(S)	100	262 / 262	ABODCJ010000017.1 Salmonella enterica strain PNUSAS393401 SAMN37882775-rid19908673.denovo.17, whole genome shotgun sequence	22543..22804																																																avrA	ABODCJ010000005.1	175028..175896	100	869	0						
GCA_032866935.1_PDT001948058.1_genomic.fna	Salmonella_enterica	0.521	696.427 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODCH010000001.1 Salmonella enterica strain PNUSAS393403 SAMN37882745-rid19908663.denovo.01, whole genome shotgun sequence	308104..308541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODCH010000019.1 Salmonella enterica strain PNUSAS393403 SAMN37882745-rid19908663.guided.14, whole genome shotgun sequence	4024..4461	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032866955.1_PDT001948057.1_genomic.fna	Salmonella_enterica	0.5213	284.073 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODCK010000001.1 Salmonella enterica strain PNUSAS393384 SAMN37882741-rid19907783.denovo.01, whole genome shotgun sequence	542756..543193	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODCK010000028.1 Salmonella enterica strain PNUSAS393384 SAMN37882741-rid19907783.guided.25, whole genome shotgun sequence	8809..9246	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODCK010000023.1 Salmonella enterica strain PNUSAS393384 SAMN37882741-rid19907783.denovo.24, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABODCK010000024.1 Salmonella enterica strain PNUSAS393384 SAMN37882741-rid19907783.denovo.27, whole genome shotgun sequence	3436..3697																																																avrA	ABODCK010000002.1	174837..175706	99.54	870	0						
GCA_032866975.1_PDT001948051.1_genomic.fna	Salmonella_enterica	0.5212	503.226 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABODCL010000001.1 Salmonella enterica strain PNUSAS393380 SAMN37882740-rid19908623.denovo.01, whole genome shotgun sequence	456549..456986	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABODCL010000021.1 Salmonella enterica strain PNUSAS393380 SAMN37882740-rid19908623.guided.18, whole genome shotgun sequence	9358..9795	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODCL010000003.1	179094..179963	99.425	870	0						
GCA_032866995.1_PDT001948031.1_genomic.fna	Salmonella_enterica	0.5187	430.374 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(S),IncI2(Delta)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABODCO010000003.1 Salmonella enterica strain PNUSAS393339 SAMN37882721-rid19908503.denovo.03, whole genome shotgun sequence	260788..261225	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABODCO010000033.1 Salmonella enterica strain PNUSAS393339 SAMN37882721-rid19908503.guided.22, whole genome shotgun sequence	86..523	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABODCO010000019.1 Salmonella enterica strain PNUSAS393339 SAMN37882721-rid19908503.denovo.19, whole genome shotgun sequence	8484..8745	enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABODCO010000015.1 Salmonella enterica strain PNUSAS393339 SAMN37882721-rid19908503.denovo.15, whole genome shotgun sequence	26677..26998																																																											
GCA_032867015.1_PDT001947975.1_genomic.fna	Salmonella_enterica	0.5219	564.862 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODCP010000001.1 Salmonella enterica strain PNUSAS393275 SAMN37881322-rid19907343.denovo.01, whole genome shotgun sequence	486956..487393	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODCP010000025.1 Salmonella enterica strain PNUSAS393275 SAMN37881322-rid19907343.guided.23, whole genome shotgun sequence	3189..3626	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODCP010000002.1	544607..545475	99.425	870	0						
GCA_032867055.1_PDT001948127.1_genomic.fna	Salmonella_enterica	0.5221	345.987 KB	6	aroC_42,dnaN_169,hemD_48,hisD_149,purE_40,sucA_23,thrA_4	2388	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_169	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_40	sucA	100	100	sucA_23	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODCS010000001.1 Salmonella enterica strain PNUSAS393422 SAMN37883104-rid19908153.denovo.01, whole genome shotgun sequence	43129..43566	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODCS010000043.1 Salmonella enterica strain PNUSAS393422 SAMN37883104-rid19908153.guided.29, whole genome shotgun sequence	117..554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODCS010000004.1	124481..125349	99.31	870	0						
GCA_032867075.1_PDT001948125.1_genomic.fna	Salmonella_enterica	0.5209	691.208 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODCT010000001.1 Salmonella enterica strain PNUSAS393441 SAMN37883191-rid19908983.denovo.01, whole genome shotgun sequence	398392..398829	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODCT010000025.1 Salmonella enterica strain PNUSAS393441 SAMN37883191-rid19908983.guided.18, whole genome shotgun sequence	6768..7205	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODCT010000003.1	496398..497266	99.425	870	0						
GCA_032867095.1_PDT001948124.1_genomic.fna	Salmonella_enterica	0.521	190.074 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODCR010000002.1 Salmonella enterica strain PNUSAS393443 SAMN37883194-rid19908133.denovo.02, whole genome shotgun sequence	316051..316488	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODCR010000057.1 Salmonella enterica strain PNUSAS393443 SAMN37883194-rid19908133.guided.38, whole genome shotgun sequence	3662..4099	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032867115.1_PDT001948117.1_genomic.fna	Salmonella_enterica	0.5206	474.151 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODCQ010000001.1 Salmonella enterica strain PNUSAS393455 SAMN37883217-rid19908093.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODCQ010000025.1 Salmonella enterica strain PNUSAS393455 SAMN37883217-rid19908093.guided.18, whole genome shotgun sequence	3145..3582	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODCQ010000013.1 Salmonella enterica strain PNUSAS393455 SAMN37883217-rid19908093.denovo.13, whole genome shotgun sequence	40542..41184	enterobacteriales	IncFII(S)	100	262 / 262	ABODCQ010000018.1 Salmonella enterica strain PNUSAS393455 SAMN37883217-rid19908093.denovo.19, whole genome shotgun sequence	3407..3668		enterobacteriales	IncX1	98.93	374 / 374	ABODCQ010000014.1 Salmonella enterica strain PNUSAS393455 SAMN37883217-rid19908093.denovo.14, whole genome shotgun sequence	10816..11189																																									avrA	ABODCQ010000002.1	553657..554526	99.54	870	0						
GCA_032867135.1_PDT001948111.1_genomic.fna	Salmonella_enterica	0.5207	389.981 KB	5	aroC_230,dnaN_38,hemD_244,hisD_407,purE_359,sucA_216,thrA_209	1088	42:z36:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_230	dnaN	100	100	dnaN_38	hemD	100	100	hemD_244	hisD	100	100	hisD_407	purE	100	100	purE_359	sucA	100	100	sucA_216	thrA	100	100	thrA_209	42	z36	-	Salmonella enterica subspecies enterica (subspecies I)	Weslaco		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032867155.1_PDT001948102.1_genomic.fna	Salmonella_enterica	0.5216	341.196 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODCW010000003.1 Salmonella enterica strain PNUSAS393446 SAMN37883185-rid19908003.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODCW010000036.1 Salmonella enterica strain PNUSAS393446 SAMN37883185-rid19908003.guided.30, whole genome shotgun sequence	2214..2651	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABODCW010000017.1 Salmonella enterica strain PNUSAS393446 SAMN37883185-rid19908003.denovo.17, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABODCW010000017.1 Salmonella enterica strain PNUSAS393446 SAMN37883185-rid19908003.denovo.17, whole genome shotgun sequence	30407..30668																																																avrA	ABODCW010000005.1	174651..175519	100	869	0						
GCA_032867165.1_PDT001948105.1_genomic.fna	Salmonella_enterica	0.5213	278.344 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	8	aac(6')-Iaa,aac(3)-IId,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,blaTEM-1B,blaTEM-1B,sul2,sul3,sul2,sul3,tet(B),tet(B)	0		2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODCV010000001.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.denovo.01, whole genome shotgun sequence	581410..581847	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABODCV010000022.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.denovo.22, whole genome shotgun sequence	60423..61283	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(6)-Id	100	837/837	ABODCV010000035.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.denovo.40, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODCV010000035.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.denovo.40, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABODCV010000044.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.guided.30, whole genome shotgun sequence	3302..3739	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODCV010000048.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.guided.39, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODCV010000048.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.guided.39, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABODCV010000050.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.guided.45, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	blaTEM-1B	100	861/861	ABODCV010000039.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.denovo.47, whole genome shotgun sequence	128..988	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABODCV010000051.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.guided.46, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABODCV010000035.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.denovo.40, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABODCV010000038.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.denovo.44, whole genome shotgun sequence	109..900	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABODCV010000048.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.guided.39, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABODCV010000049.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.guided.43, whole genome shotgun sequence	2051..2842	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABODCV010000030.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.denovo.32, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABODCV010000047.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.guided.35, whole genome shotgun sequence	4844..6049	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABODCV010000028.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.denovo.28, whole genome shotgun sequence	19810..20491	enterobacteriales	IncFIC(FII)	94	500 / 499	ABODCV010000022.1 Salmonella enterica strain PNUSAS393449 SAMN37883184-rid19908903.denovo.22, whole genome shotgun sequence	55736..56232																																																avrA	ABODCV010000002.1	540747..541616	99.885	870	0						
GCA_032867195.1_PDT001948099.1_genomic.fna	Salmonella_enterica	0.5192	225.125 KB	6	aroC_1152,dnaN_38*,hemD_264,hisD_260,purE_236,sucA_216,thrA_1286	7981*	7:b:e,n,z15	0		1	parC_p.T57S	0		aroC	100	100	aroC_1152	dnaN	99.8003992015968	100	dnaN_38*	hemD	100	100	hemD_264	hisD	100	100	hisD_260	purE	100	100	purE_236	sucA	100	100	sucA_216	thrA	100	100	thrA_1286	7	b	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Georgia		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032867215.1_PDT001948100.1_genomic.fna	Salmonella_enterica	0.5208	467.309 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODCX010000006.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.denovo.06, whole genome shotgun sequence	257803..258240	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABODCX010000025.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.denovo.30, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABODCX010000038.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.guided.22, whole genome shotgun sequence	1318..1755	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABODCX010000040.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.guided.29, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABODCX010000025.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.denovo.30, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABODCX010000040.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.guided.29, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABODCX010000023.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.denovo.27, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABODCX010000039.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.guided.26, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABODCX010000022.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.denovo.25, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABODCX010000041.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.guided.33, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABODCX010000025.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.denovo.30, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABODCX010000040.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.guided.29, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABODCX010000029.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.denovo.37, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABODCX010000043.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.guided.36, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABODCX010000022.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.denovo.25, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABODCX010000042.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.guided.34, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABODCX010000022.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.denovo.25, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABODCX010000042.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.guided.34, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABODCX010000019.1 Salmonella enterica strain PNUSAS393426 SAMN37883117-rid19908883.denovo.21, whole genome shotgun sequence	4434..4684																																																						avrA	ABODCX010000003.1	553474..554343	99.77	870	0						
GCA_032867235.1_PDT001948097.1_genomic.fna	Salmonella_enterica	0.5211	406.452 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,sul2,tet(A),tet(A)	0		4	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncN	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODDB010000001.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.denovo.01, whole genome shotgun sequence	774552..774989	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODDB010000013.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.denovo.15, whole genome shotgun sequence	9260..10096	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODDB010000013.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.denovo.15, whole genome shotgun sequence	10096..10899	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABODDB010000039.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	804/804	ABODDB010000041.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.guided.18, whole genome shotgun sequence	28562..29365	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABODDB010000043.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.guided.24, whole genome shotgun sequence	5918..6754	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODDB010000043.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.guided.24, whole genome shotgun sequence	5115..5918	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABODDB010000013.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.denovo.15, whole genome shotgun sequence	17416..18276	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABODDB010000041.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.guided.18, whole genome shotgun sequence	21185..22045	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABODDB010000013.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.denovo.15, whole genome shotgun sequence	10960..11775	Sulfamethoxazole	AY034138	sul2	100	816/816	ABODDB010000041.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.guided.18, whole genome shotgun sequence	27686..28501	Sulfamethoxazole	AY034138	sul2	100	816/816	ABODDB010000043.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.guided.24, whole genome shotgun sequence	4239..5054	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABODDB010000013.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.denovo.15, whole genome shotgun sequence	15288..16487	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABODDB010000041.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.guided.18, whole genome shotgun sequence	22974..24173	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODDB010000018.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.denovo.21, whole genome shotgun sequence	6829..7471	enterobacteriales	IncFII(S)	100	262 / 262	ABODDB010000019.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.denovo.23, whole genome shotgun sequence	3395..3656		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABODDB010000017.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.denovo.20, whole genome shotgun sequence	3406..3547		enterobacteriales	IncN	100	514 / 514	ABODDB010000020.1 Salmonella enterica strain PNUSAS393174 SAMN37883111-rid19907973.denovo.25, whole genome shotgun sequence	768..1281																																		avrA	ABODDB010000002.1	552982..553851	99.54	870	0						
GCA_032867255.1_PDT001948093.1_genomic.fna	Salmonella_enterica	0.5216	275.1 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODCZ010000001.1 Salmonella enterica strain PNUSAS393435 SAMN37883103-rid19908853.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODCZ010000039.1 Salmonella enterica strain PNUSAS393435 SAMN37883103-rid19908853.guided.18, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODCZ010000003.1	208090..208958	99.77	870	0						
GCA_032867275.1_PDT001948091.1_genomic.fna	Salmonella_enterica	0.5225	397.893 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODCY010000001.1 Salmonella enterica strain PNUSAS393434 SAMN37883100-rid19907933.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODCY010000033.1 Salmonella enterica strain PNUSAS393434 SAMN37883100-rid19907933.guided.21, whole genome shotgun sequence	33984..34421	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODCY010000002.1	149828..150697	99.655	870	0						
GCA_032867295.1_PDT001948090.1_genomic.fna	Salmonella_enterica	0.5208	376.998 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODDA010000004.1 Salmonella enterica strain PNUSAS393420 SAMN37883105-rid19907923.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODDA010000053.1 Salmonella enterica strain PNUSAS393420 SAMN37883105-rid19907923.guided.23, whole genome shotgun sequence	38875..39312	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODDA010000001.1	446755..447623	100	869	0						
GCA_032867315.1_PDT001948080.1_genomic.fna	Salmonella_enterica	0.5213	477.349 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODDD010000001.1 Salmonella enterica strain PNUSAS393164 SAMN37883013-rid19908793.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.21	422/438	ABODDD010000026.1 Salmonella enterica strain PNUSAS393164 SAMN37883013-rid19908793.guided.19, whole genome shotgun sequence	1..422	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODDD010000018.1 Salmonella enterica strain PNUSAS393164 SAMN37883013-rid19908793.denovo.18, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABODDD010000019.1 Salmonella enterica strain PNUSAS393164 SAMN37883013-rid19908793.denovo.22, whole genome shotgun sequence	3423..3684																																																avrA	ABODDD010000002.1	553187..554056	99.54	870	0						
GCA_032867335.1_PDT001948076.1_genomic.fna	Salmonella_enterica	0.5215	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODDF010000001.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.denovo.01, whole genome shotgun sequence	573961..574398	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABODDF010000025.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.denovo.25, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABODDF010000025.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.denovo.25, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABODDF010000036.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.denovo.42, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABODDF010000036.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.denovo.42, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABODDF010000053.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.guided.28, whole genome shotgun sequence	10533..10970	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABODDF010000055.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.guided.32, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABODDF010000055.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.guided.32, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABODDF010000058.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.guided.41, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABODDF010000058.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.guided.41, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABODDF010000037.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.denovo.43, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABODDF010000059.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.guided.45, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABODDF010000034.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.denovo.39, whole genome shotgun sequence	2782..3995	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABODDF010000057.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.guided.38, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABODDF010000025.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.denovo.25, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABODDF010000055.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.guided.32, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABODDF010000025.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.denovo.25, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABODDF010000055.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.guided.32, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABODDF010000024.1 Salmonella enterica strain PNUSAS393156 SAMN37883004-rid19908773.denovo.24, whole genome shotgun sequence	25432..25991																																																						avrA	ABODDF010000002.1	149828..150697	99.655	870	0						
GCA_032867355.1_PDT001948075.1_genomic.fna	Salmonella_enterica	0.5205	208.694 KB	8	aroC_10,dnaN_129,hemD_647,hisD_153,purE_8,sucA_9,thrA_22	4329	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_647	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODDE010000002.1 Salmonella enterica strain PNUSAS393159 SAMN37883007-rid19908763.denovo.02, whole genome shotgun sequence	270853..271290	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODDE010000045.1 Salmonella enterica strain PNUSAS393159 SAMN37883007-rid19908763.guided.29, whole genome shotgun sequence	3024..3461	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABODDE010000024.1 Salmonella enterica strain PNUSAS393159 SAMN37883007-rid19908763.denovo.24, whole genome shotgun sequence	62736..63378																																																																	
GCA_032867375.1_PDT001948074.1_genomic.fna	Salmonella_enterica	0.5193	724.834 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODDJ010000001.1 Salmonella enterica strain PNUSAS393171 SAMN37883001-rid19907853.denovo.01, whole genome shotgun sequence	1113329..1113766	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODDJ010000026.1 Salmonella enterica strain PNUSAS393171 SAMN37883001-rid19907853.guided.15, whole genome shotgun sequence	12501..12938	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABODDJ010000011.1 Salmonella enterica strain PNUSAS393171 SAMN37883001-rid19907853.denovo.11, whole genome shotgun sequence	30845..30986																																																						avrA	ABODDJ010000002.1	556203..557071	99.425	870	0						
GCA_032867395.1_PDT001948064.1_genomic.fna	Salmonella_enterica	0.5219	714.483 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODDH010000001.1 Salmonella enterica strain PNUSAS393398 SAMN37882776-rid19907813.denovo.01, whole genome shotgun sequence	1111707..1112144	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODDH010000017.1 Salmonella enterica strain PNUSAS393398 SAMN37882776-rid19907813.denovo.20, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABODDH010000017.1 Salmonella enterica strain PNUSAS393398 SAMN37882776-rid19907813.denovo.20, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABODDH010000017.1 Salmonella enterica strain PNUSAS393398 SAMN37882776-rid19907813.denovo.20, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABODDH010000017.1 Salmonella enterica strain PNUSAS393398 SAMN37882776-rid19907813.denovo.20, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABODDH010000017.1 Salmonella enterica strain PNUSAS393398 SAMN37882776-rid19907813.denovo.20, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABODDH010000030.1 Salmonella enterica strain PNUSAS393398 SAMN37882776-rid19907813.guided.17, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODDH010000032.1 Salmonella enterica strain PNUSAS393398 SAMN37882776-rid19907813.guided.22, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABODDH010000032.1 Salmonella enterica strain PNUSAS393398 SAMN37882776-rid19907813.guided.22, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABODDH010000032.1 Salmonella enterica strain PNUSAS393398 SAMN37882776-rid19907813.guided.22, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABODDH010000032.1 Salmonella enterica strain PNUSAS393398 SAMN37882776-rid19907813.guided.22, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABODDH010000032.1 Salmonella enterica strain PNUSAS393398 SAMN37882776-rid19907813.guided.22, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABODDH010000018.1 Salmonella enterica strain PNUSAS393398 SAMN37882776-rid19907813.denovo.21, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABODDH010000033.1 Salmonella enterica strain PNUSAS393398 SAMN37882776-rid19907813.guided.24, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODDH010000003.1	573274..574143	99.655	870	0						
GCA_032867405.1_PDT001948070.1_genomic.fna	Salmonella_enterica	0.521	440.016 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODDI010000001.1 Salmonella enterica strain PNUSAS393389 SAMN37882785-rid19908733.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODDI010000026.1 Salmonella enterica strain PNUSAS393389 SAMN37882785-rid19908733.guided.18, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODDI010000019.1 Salmonella enterica strain PNUSAS393389 SAMN37882785-rid19908733.denovo.21, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABODDI010000020.1 Salmonella enterica strain PNUSAS393389 SAMN37882785-rid19908733.denovo.23, whole genome shotgun sequence	3413..3674																																																avrA	ABODDI010000003.1	175197..176066	99.54	870	0						
GCA_032867435.1_PDT001948056.1_genomic.fna	Salmonella_enterica	0.5211	199.165 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODDK010000001.1 Salmonella enterica strain PNUSAS393390 SAMN37882743-rid19908653.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODDK010000047.1 Salmonella enterica strain PNUSAS393390 SAMN37882743-rid19908653.guided.37, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODDK010000005.1	184788..185656	99.77	870	0						
GCA_032867455.1_PDT001948059.1_genomic.fna	Salmonella_enterica	0.5218	257.84 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODDG010000001.1 Salmonella enterica strain PNUSAS393402 SAMN37882744-rid19907793.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODDG010000040.1 Salmonella enterica strain PNUSAS393402 SAMN37882744-rid19907793.guided.33, whole genome shotgun sequence	9915..10352	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABODDG010000025.1 Salmonella enterica strain PNUSAS393402 SAMN37882744-rid19907793.denovo.25, whole genome shotgun sequence	44728..45370	enterobacteriales	IncFII(S)	100	262 / 262	ABODDG010000025.1 Salmonella enterica strain PNUSAS393402 SAMN37882744-rid19907793.denovo.25, whole genome shotgun sequence	29382..29643																																																avrA	ABODDG010000007.1	97953..98821	100	869	0						
GCA_032867475.1_PDT001948055.1_genomic.fna	Salmonella_enterica	0.5212	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODDL010000001.1 Salmonella enterica strain PNUSAS393391 SAMN37882742-rid19908643.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODDL010000027.1 Salmonella enterica strain PNUSAS393391 SAMN37882742-rid19908643.guided.20, whole genome shotgun sequence	30322..30759	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODDL010000020.1 Salmonella enterica strain PNUSAS393391 SAMN37882742-rid19908643.denovo.23, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABODDL010000021.1 Salmonella enterica strain PNUSAS393391 SAMN37882742-rid19908643.denovo.24, whole genome shotgun sequence	3414..3675																																																avrA	ABODDL010000002.1	553642..554511	99.54	870	0						
GCA_032867495.1_PDT001948052.1_genomic.fna	Salmonella_enterica	0.5211	489.888 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODDM010000001.1 Salmonella enterica strain PNUSAS393383 SAMN37882738-rid19907763.denovo.01, whole genome shotgun sequence	772306..772743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODDM010000023.1 Salmonella enterica strain PNUSAS393383 SAMN37882738-rid19907763.guided.16, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODDM010000017.1 Salmonella enterica strain PNUSAS393383 SAMN37882738-rid19907763.denovo.20, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABODDM010000018.1 Salmonella enterica strain PNUSAS393383 SAMN37882738-rid19907763.denovo.21, whole genome shotgun sequence	3398..3659																																																avrA	ABODDM010000002.1	553636..554505	99.54	870	0						
GCA_032867515.1_PDT001948054.1_genomic.fna	Salmonella_enterica	0.5213	301.999 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODDN010000001.1 Salmonella enterica strain PNUSAS393388 SAMN37882736-rid19907773.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODDN010000031.1 Salmonella enterica strain PNUSAS393388 SAMN37882736-rid19907773.guided.24, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODDN010000024.1 Salmonella enterica strain PNUSAS393388 SAMN37882736-rid19907773.denovo.26, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABODDN010000019.1 Salmonella enterica strain PNUSAS393388 SAMN37882736-rid19907773.denovo.20, whole genome shotgun sequence	5032..5293																																																avrA	ABODDN010000002.1	553635..554504	99.54	870	0						
GCA_032867535.1_PDT001948050.1_genomic.fna	Salmonella_enterica	0.5208	273.328 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODDO010000002.1 Salmonella enterica strain PNUSAS393386 SAMN37882739-rid19908613.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODDO010000038.1 Salmonella enterica strain PNUSAS393386 SAMN37882739-rid19908613.guided.23, whole genome shotgun sequence	9842..10279	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODDO010000005.1	174651..175519	100	869	0						
GCA_032867555.1_PDT001948049.1_genomic.fna	Salmonella_enterica	0.5207	406.919 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODDQ010000001.1 Salmonella enterica strain PNUSAS393351 SAMN37882723-rid19907753.denovo.01, whole genome shotgun sequence	774378..774815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODDQ010000027.1 Salmonella enterica strain PNUSAS393351 SAMN37882723-rid19907753.guided.21, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODDQ010000018.1 Salmonella enterica strain PNUSAS393351 SAMN37882723-rid19907753.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABODDQ010000019.1 Salmonella enterica strain PNUSAS393351 SAMN37882723-rid19907753.denovo.22, whole genome shotgun sequence	3429..3690		enterobacteriales	IncX1	98.93	374 / 374	ABODDQ010000014.1 Salmonella enterica strain PNUSAS393351 SAMN37882723-rid19907753.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABODDQ010000002.1	553688..554557	99.54	870	0						
GCA_032867575.1_PDT001948048.1_genomic.fna	Salmonella_enterica	0.5215	372.939 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODDP010000001.1 Salmonella enterica strain PNUSAS393350 SAMN37882725-rid19908603.denovo.01, whole genome shotgun sequence	498156..498593	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODDP010000034.1 Salmonella enterica strain PNUSAS393350 SAMN37882725-rid19908603.guided.24, whole genome shotgun sequence	5118..5555	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODDP010000002.1	94265..95134	99.425	870	0						
GCA_032867595.1_PDT001948045.1_genomic.fna	Salmonella_enterica	0.5211	261.701 KB	7	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncI(Gamma)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODDR010000009.1 Salmonella enterica strain PNUSAS393345 SAMN37882724-rid19908583.denovo.09, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODDR010000043.1 Salmonella enterica strain PNUSAS393345 SAMN37882724-rid19908583.guided.30, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABODDR010000022.1 Salmonella enterica strain PNUSAS393345 SAMN37882724-rid19908583.denovo.22, whole genome shotgun sequence	34957..35490	enterobacteriales	IncI(Gamma)	97.81	137 / 141	ABODDR010000020.1 Salmonella enterica strain PNUSAS393345 SAMN37882724-rid19908583.denovo.20, whole genome shotgun sequence	69950..70086																																																avrA	ABODDR010000010.1	153747..154615	99.54	870	0						
GCA_032867615.1_PDT001948047.1_genomic.fna	Salmonella_enterica	0.5218	719.131 KB	2	aroC_50,dnaN_63,hemD_25,hisD_72,purE_59,sucA_292,thrA_63	1515	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_63	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_59	sucA	100	100	sucA_292	thrA	100	100	thrA_63	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODDS010000001.1 Salmonella enterica strain PNUSAS393353 SAMN37882728-rid19907743.denovo.01, whole genome shotgun sequence	645105..645542	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODDS010000017.1 Salmonella enterica strain PNUSAS393353 SAMN37882728-rid19907743.guided.14, whole genome shotgun sequence	2185..2622	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODDS010000006.1	144592..145461	99.425	870	0						
GCA_032867635.1_PDT001948043.1_genomic.fna	Salmonella_enterica	0.5227	288.098 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABODDU010000001.1 Salmonella enterica strain PNUSAS393337 SAMN37882726-rid19908573.denovo.01, whole genome shotgun sequence	405412..405849	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.25	402/438	ABODDU010000035.1 Salmonella enterica strain PNUSAS393337 SAMN37882726-rid19908573.guided.27, whole genome shotgun sequence	3..404	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODDU010000007.1	94166..95034	99.425	870	0						
GCA_032867655.1_PDT001948042.1_genomic.fna	Salmonella_enterica	0.5226	175.716 KB	10	aroC_346,dnaN_4,hemD_8,hisD_125,purE_84,sucA_19,thrA_101	1296	9:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_346	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_19	thrA	100	100	thrA_101	9	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Lome		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABODDT010000001.1 Salmonella enterica strain PNUSAS393340 SAMN37882718-rid19907723.denovo.01, whole genome shotgun sequence	149865..150302	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABODDT010000050.1 Salmonella enterica strain PNUSAS393340 SAMN37882718-rid19907723.guided.42, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODDT010000009.1	93973..94842	98.966	870	0						
GCA_032867675.1_PDT001948041.1_genomic.fna	Salmonella_enterica	0.5213	511.567 KB	4	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODDV010000001.1 Salmonella enterica strain PNUSAS393344 SAMN37882727-rid19908563.denovo.01, whole genome shotgun sequence	172228..172665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABODDV010000023.1 Salmonella enterica strain PNUSAS393344 SAMN37882727-rid19908563.guided.17, whole genome shotgun sequence	8937..9374	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODDV010000002.1	553278..554147	99.77	870	0						
GCA_032867695.1_PDT001948039.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	4	Col156,Col8282,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODDX010000001.1 Salmonella enterica strain PNUSAS393343 SAMN37882719-rid19907713.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODDX010000028.1 Salmonella enterica strain PNUSAS393343 SAMN37882719-rid19907713.guided.22, whole genome shotgun sequence	3021..3458	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col156	96.05	152 / 154	ABODDX010000017.1 Salmonella enterica strain PNUSAS393343 SAMN37882719-rid19907713.denovo.19, whole genome shotgun sequence	5713..5864	enterobacteriales	Col8282	100	207 / 207	ABODDX010000018.1 Salmonella enterica strain PNUSAS393343 SAMN37882719-rid19907713.denovo.20, whole genome shotgun sequence	1109..1315		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODDX010000016.1 Salmonella enterica strain PNUSAS393343 SAMN37882719-rid19907713.denovo.17, whole genome shotgun sequence	6825..7467		enterobacteriales	IncFII(S)	100	262 / 262	ABODDX010000013.1 Salmonella enterica strain PNUSAS393343 SAMN37882719-rid19907713.denovo.14, whole genome shotgun sequence	5032..5293																																		avrA	ABODDX010000002.1	553636..554505	99.54	870	0						
GCA_032867715.1_PDT001948036.1_genomic.fna	Salmonella_enterica	0.522	341.195 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODDY010000003.1 Salmonella enterica strain PNUSAS393335 SAMN37882717-rid19908533.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODDY010000040.1 Salmonella enterica strain PNUSAS393335 SAMN37882717-rid19908533.guided.28, whole genome shotgun sequence	2499..2936	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABODDY010000016.1 Salmonella enterica strain PNUSAS393335 SAMN37882717-rid19908533.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABODDY010000016.1 Salmonella enterica strain PNUSAS393335 SAMN37882717-rid19908533.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABODDY010000001.1	446725..447593	100	869	0						
GCA_032867735.1_PDT001948034.1_genomic.fna	Salmonella_enterica	0.5221	437.192 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODDW010000001.1 Salmonella enterica strain PNUSAS393346 SAMN37882729-rid19907693.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODDW010000028.1 Salmonella enterica strain PNUSAS393346 SAMN37882729-rid19907693.guided.18, whole genome shotgun sequence	29594..30031	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABODDW010000020.1 Salmonella enterica strain PNUSAS393346 SAMN37882729-rid19907693.denovo.23, whole genome shotgun sequence	547..675																																																						avrA	ABODDW010000006.1	147026..147895	98.966	870	0						
GCA_032867755.1_PDT001948029.1_genomic.fna	Salmonella_enterica	0.5218	257.556 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODDZ010000001.1 Salmonella enterica strain PNUSAS393338 SAMN37882720-rid19907673.denovo.01, whole genome shotgun sequence	380041..380478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODDZ010000040.1 Salmonella enterica strain PNUSAS393338 SAMN37882720-rid19907673.guided.31, whole genome shotgun sequence	24635..25072	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODDZ010000002.1	218734..219602	99.77	870	0						
GCA_032867775.1_PDT001948023.1_genomic.fna	Salmonella_enterica	0.5211	406.409 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODEA010000001.1 Salmonella enterica strain PNUSAS393355 SAMN37882696-rid19907633.denovo.01, whole genome shotgun sequence	534377..534814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODEA010000027.1 Salmonella enterica strain PNUSAS393355 SAMN37882696-rid19907633.guided.16, whole genome shotgun sequence	20497..20934	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODEA010000019.1 Salmonella enterica strain PNUSAS393355 SAMN37882696-rid19907633.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABODEA010000020.1 Salmonella enterica strain PNUSAS393355 SAMN37882696-rid19907633.denovo.23, whole genome shotgun sequence	3395..3656																																																avrA	ABODEA010000002.1	553180..554049	99.54	870	0						
GCA_032867795.1_PDT001948022.1_genomic.fna	Salmonella_enterica	0.5206	466.405 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODEB010000001.1 Salmonella enterica strain PNUSAS393354 SAMN37882692-rid19907623.denovo.01, whole genome shotgun sequence	628569..629006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODEB010000025.1 Salmonella enterica strain PNUSAS393354 SAMN37882692-rid19907623.guided.19, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABODEB010000014.1 Salmonella enterica strain PNUSAS393354 SAMN37882692-rid19907623.denovo.14, whole genome shotgun sequence	2465..2998																																																						avrA	ABODEB010000008.1	150695..151565	99.196	871	0						
GCA_032867805.1_PDT001948021.1_genomic.fna	Salmonella_enterica	0.5214	382.002 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODED010000001.1 Salmonella enterica strain PNUSAS393342 SAMN37882690-rid19908463.denovo.01, whole genome shotgun sequence	774108..774545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODED010000028.1 Salmonella enterica strain PNUSAS393342 SAMN37882690-rid19908463.guided.23, whole genome shotgun sequence	3848..4285	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODED010000019.1 Salmonella enterica strain PNUSAS393342 SAMN37882690-rid19908463.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABODED010000020.1 Salmonella enterica strain PNUSAS393342 SAMN37882690-rid19908463.denovo.22, whole genome shotgun sequence	3392..3653																																																avrA	ABODED010000002.1	553648..554517	99.54	870	0						
GCA_032867835.1_PDT001948016.1_genomic.fna	Salmonella_enterica	0.5223	312.169 KB	6	aroC_2,dnaN_4,hemD_40,hisD_43,purE_481,sucA_2,thrA_425	2125	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_4	hemD	100	100	hemD_40	hisD	100	100	hisD_43	purE	100	100	purE_481	sucA	100	100	sucA_2	thrA	100	100	thrA_425	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABODEE010000001.1 Salmonella enterica strain PNUSAS393358 SAMN37882697-rid19908443.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABODEE010000040.1 Salmonella enterica strain PNUSAS393358 SAMN37882697-rid19908443.guided.27, whole genome shotgun sequence	20661..21098	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODEE010000012.1	99818..100687	99.77	870	0						
GCA_032867855.1_PDT001948017.1_genomic.fna	Salmonella_enterica	0.5223	198.05 KB	7	aroC_2,dnaN_4,hemD_40,hisD_43,purE_481,sucA_2,thrA_425	2125	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_4	hemD	100	100	hemD_40	hisD	100	100	hisD_43	purE	100	100	purE_481	sucA	100	100	sucA_2	thrA	100	100	thrA_425	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABODEC010000001.1 Salmonella enterica strain PNUSAS393359 SAMN37882695-rid19907593.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABODEC010000041.1 Salmonella enterica strain PNUSAS393359 SAMN37882695-rid19907593.guided.33, whole genome shotgun sequence	3478..3915	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODEC010000013.1	99818..100687	99.77	870	0						
GCA_032867875.1_PDT001948013.1_genomic.fna	Salmonella_enterica	0.5212	406.453 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		3	Col(pHAD28),Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODEF010000001.1 Salmonella enterica strain PNUSAS393336 SAMN37882689-rid19908433.denovo.01, whole genome shotgun sequence	774495..774932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODEF010000029.1 Salmonella enterica strain PNUSAS393336 SAMN37882689-rid19908433.guided.19, whole genome shotgun sequence	7759..8196	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABODEF010000021.1 Salmonella enterica strain PNUSAS393336 SAMN37882689-rid19908433.denovo.25, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABODEF010000031.1 Salmonella enterica strain PNUSAS393336 SAMN37882689-rid19908433.guided.24, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABODEF010000021.1 Salmonella enterica strain PNUSAS393336 SAMN37882689-rid19908433.denovo.25, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABODEF010000031.1 Salmonella enterica strain PNUSAS393336 SAMN37882689-rid19908433.guided.24, whole genome shotgun sequence	2435..2565		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODEF010000015.1 Salmonella enterica strain PNUSAS393336 SAMN37882689-rid19908433.denovo.15, whole genome shotgun sequence	40576..41218		enterobacteriales	IncFII(S)	100	262 / 262	ABODEF010000018.1 Salmonella enterica strain PNUSAS393336 SAMN37882689-rid19908433.denovo.21, whole genome shotgun sequence	3404..3665																																		avrA	ABODEF010000002.1	553636..554505	99.54	870	0						
GCA_032867895.1_PDT001948003.1_genomic.fna	Salmonella_enterica	0.5212	430.205 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODEI010000001.1 Salmonella enterica strain PNUSAS393297 SAMN37882303-rid19908393.denovo.01, whole genome shotgun sequence	604580..605017	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODEI010000039.1 Salmonella enterica strain PNUSAS393297 SAMN37882303-rid19908393.guided.21, whole genome shotgun sequence	2335..2772	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	ABODEI010000022.1 Salmonella enterica strain PNUSAS393297 SAMN37882303-rid19908393.denovo.25, whole genome shotgun sequence	792..945																																																						avrA	ABODEI010000003.1	121617..122486	98.966	870	0						
GCA_032867915.1_PDT001948004.1_genomic.fna	Salmonella_enterica	0.5193	227.482 KB	6	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODEG010000002.1 Salmonella enterica strain PNUSAS393299 SAMN37882311-rid19907513.denovo.02, whole genome shotgun sequence	370303..370740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODEG010000044.1 Salmonella enterica strain PNUSAS393299 SAMN37882311-rid19907513.guided.30, whole genome shotgun sequence	6758..7195	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032867935.1_PDT001948002.1_genomic.fna	Salmonella_enterica	0.5206	430.612 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncI1-I(Alpha)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODEH010000011.1 Salmonella enterica strain PNUSAS393296 SAMN37882304-rid19907503.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODEH010000032.1 Salmonella enterica strain PNUSAS393296 SAMN37882304-rid19907503.guided.17, whole genome shotgun sequence	42435..42872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABODEH010000018.1 Salmonella enterica strain PNUSAS393296 SAMN37882304-rid19907503.denovo.19, whole genome shotgun sequence	34957..35490	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABODEH010000015.1 Salmonella enterica strain PNUSAS393296 SAMN37882304-rid19907503.denovo.15, whole genome shotgun sequence	65974..66115																																																avrA	ABODEH010000002.1	209205..210071	98.966	870	0						
GCA_032867975.1_PDT001947995.1_genomic.fna	Salmonella_enterica	0.5222	409.13 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABODEK010000001.1 Salmonella enterica strain FDA1235040-C001-001 SAMN37881742-rid19907463.denovo.01, whole genome shotgun sequence	402629..403066	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABODEK010000039.1 Salmonella enterica strain FDA1235040-C001-001 SAMN37881742-rid19907463.guided.21, whole genome shotgun sequence	15897..16334	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABODEK010000023.1 Salmonella enterica strain FDA1235040-C001-001 SAMN37881742-rid19907463.denovo.26, whole genome shotgun sequence	1367..1497	enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABODEK010000026.1 Salmonella enterica strain FDA1235040-C001-001 SAMN37881742-rid19907463.denovo.29, whole genome shotgun sequence	547..675																																																											
GCA_032867995.1_PDT001947988.1_genomic.fna	Salmonella_enterica	0.5225	218.39 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODEL010000001.1 Salmonella enterica strain PNUSAS393281 SAMN37881324-rid19908333.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODEL010000041.1 Salmonella enterica strain PNUSAS393281 SAMN37881324-rid19908333.guided.24, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODEL010000010.1	101522..102391	99.655	870	0						
GCA_032868055.1_PDT001948128.1_genomic.fna	Salmonella_enterica	0.5226	400.654 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODEO010000001.1 Salmonella enterica strain PNUSAS393427 SAMN37883197-rid19908993.denovo.01, whole genome shotgun sequence	63811..64248	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODEO010000030.1 Salmonella enterica strain PNUSAS393427 SAMN37883197-rid19908993.guided.15, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODEO010000002.1	94091..94960	99.655	870	0						
GCA_032868075.1_PDT001948114.1_genomic.fna	Salmonella_enterica	0.5224	416.814 KB	5	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABODEP010000001.1 Salmonella enterica strain PNUSAS393428 SAMN37883196-rid19908073.denovo.01, whole genome shotgun sequence	666961..667398	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABODEP010000027.1 Salmonella enterica strain PNUSAS393428 SAMN37883196-rid19908073.guided.19, whole genome shotgun sequence	13423..13860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODEP010000005.1	275705..276574	99.31	870	0						
GCA_032868095.1_PDT001948109.1_genomic.fna	Salmonella_enterica	0.5182	279.769 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	17	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA22,aph(3')-Ia,blaCTX-M-55,blaLAP-2,blaTEM-1B,blaCTX-M-55,blaLAP-2,blaTEM-1B,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrB19,qnrS1,qnrB19,sul3,sul2,sul2,sul3,tet(B),tet(B)	0		4	Col(pHAD28),Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODER010000001.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODER010000041.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.45, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODER010000041.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.45, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABODER010000045.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.52, whole genome shotgun sequence	263..1123	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABODER010000051.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.65, whole genome shotgun sequence	944..1735	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABODER010000054.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.70, whole genome shotgun sequence	239..1054	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	EF015636	aac(6')-Iaa	100	438/438	ABODER010000065.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.37, whole genome shotgun sequence	5636..6073	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODER010000066.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.44, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODER010000066.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.44, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABODER010000070.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.53, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABODER010000076.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.64, whole genome shotgun sequence	985..1776	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABODER010000078.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.69, whole genome shotgun sequence	163..978	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	EF015636	blaCTX-M-55	100	876/876	ABODER010000035.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.38, whole genome shotgun sequence	4152..5027	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABODER010000049.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.61, whole genome shotgun sequence	2055..2912	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABODER010000053.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.68, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	ABODER010000068.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.48, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaLAP-2	100	858/858	ABODER010000073.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.59, whole genome shotgun sequence	2096..2953	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABODER010000077.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.67, whole genome shotgun sequence	474..1334	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	ABODER010000047.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.56, whole genome shotgun sequence	2577..3482	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABODER010000051.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.65, whole genome shotgun sequence	1867..2688	Lincomycin	EU118119	mph(A)	100	906/906	ABODER010000071.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.54, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABODER010000076.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.64, whole genome shotgun sequence	1908..2729	Lincomycin	EU118119	floR	98.11	1214/1215	ABODER010000036.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.39, whole genome shotgun sequence	875..2088	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABODER010000069.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.51, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABODER010000042.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.47, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrB19	100	645/645	ABODER010000050.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.62, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrS1	100	657/657	ABODER010000067.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.46, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	qnrB19	100	645/645	ABODER010000074.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.60, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul3	100	792/792	ABODER010000033.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.34, whole genome shotgun sequence	13388..14179	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABODER010000041.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.45, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABODER010000066.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.44, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABODER010000075.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.63, whole genome shotgun sequence	2060..2851	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABODER010000032.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABODER010000072.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.57, whole genome shotgun sequence	1752..2957	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	100	131 / 131	ABODER010000050.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.62, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABODER010000074.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.guided.60, whole genome shotgun sequence	2416..2546		enterobacteriales	IncHI2	100	327 / 327	ABODER010000015.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.15, whole genome shotgun sequence	35058..35384		enterobacteriales	IncHI2A	99.52	630 / 630	ABODER010000015.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.15, whole genome shotgun sequence	53368..53997		enterobacteriales	IncN	100	512 / 514	ABODER010000055.1 Salmonella enterica strain PNUSAS393430 SAMN37883195-rid19908043.denovo.71, whole genome shotgun sequence	470..981																											avrA	ABODER010000002.1	540741..541610	99.885	870	0						
GCA_032868105.1_PDT001948112.1_genomic.fna	Salmonella_enterica	0.5212	686.175 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODEQ010000001.1 Salmonella enterica strain PNUSAS393437 SAMN37883192-rid19908063.denovo.01, whole genome shotgun sequence	408804..409241	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODEQ010000027.1 Salmonella enterica strain PNUSAS393437 SAMN37883192-rid19908063.guided.19, whole genome shotgun sequence	5291..5728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABODEQ010000012.1 Salmonella enterica strain PNUSAS393437 SAMN37883192-rid19908063.denovo.12, whole genome shotgun sequence	51983..52244																																																						avrA	ABODEQ010000003.1	496856..497724	99.425	870	0						
GCA_032868135.1_PDT001948108.1_genomic.fna	Salmonella_enterica	0.522	337.572 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODES010000001.1 Salmonella enterica strain PNUSAS393440 SAMN37883193-rid19908913.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODES010000032.1 Salmonella enterica strain PNUSAS393440 SAMN37883193-rid19908913.guided.21, whole genome shotgun sequence	26424..26861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODES010000002.1	149828..150697	99.655	870	0						
GCA_032868155.1_PDT001948106.1_genomic.fna	Salmonella_enterica	0.5212	465.919 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODET010000001.1 Salmonella enterica strain PNUSAS393450 SAMN37883180-rid19908023.denovo.01, whole genome shotgun sequence	1337447..1337884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODET010000022.1 Salmonella enterica strain PNUSAS393450 SAMN37883180-rid19908023.guided.10, whole genome shotgun sequence	26842..27279	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODET010000008.1	123220..124088	99.195	870	0						
GCA_032868175.1_PDT001948103.1_genomic.fna	Salmonella_enterica	0.5205	430.002 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABODEU010000001.1 Salmonella enterica strain PNUSAS393444 SAMN37883182-rid19908893.denovo.01, whole genome shotgun sequence	605831..606268	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABODEU010000030.1 Salmonella enterica strain PNUSAS393444 SAMN37883182-rid19908893.guided.15, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODEU010000009.1	140203..141071	99.195	870	0						
GCA_032868195.1_PDT001948095.1_genomic.fna	Salmonella_enterica	0.5202	451.621 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODEW010000001.1 Salmonella enterica strain PNUSAS393429 SAMN37883099-rid19908863.denovo.01, whole genome shotgun sequence	645050..645487	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABODEW010000062.1 Salmonella enterica strain PNUSAS393429 SAMN37883099-rid19908863.guided.24, whole genome shotgun sequence	2896..3333	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABODEW010000021.1 Salmonella enterica strain PNUSAS393429 SAMN37883099-rid19908863.denovo.23, whole genome shotgun sequence	11447..12089																																																						avrA	ABODEW010000004.1	149790..150659	99.77	870	0						
GCA_032868215.1_PDT001948098.1_genomic.fna	Salmonella_enterica	0.5214	273.328 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODEV010000002.1 Salmonella enterica strain PNUSAS393172 SAMN37883109-rid19908873.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODEV010000045.1 Salmonella enterica strain PNUSAS393172 SAMN37883109-rid19908873.guided.32, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABODEV010000024.1 Salmonella enterica strain PNUSAS393172 SAMN37883109-rid19908873.denovo.24, whole genome shotgun sequence	44724..45366	enterobacteriales	IncFII(S)	100	262 / 262	ABODEV010000024.1 Salmonella enterica strain PNUSAS393172 SAMN37883109-rid19908873.denovo.24, whole genome shotgun sequence	29378..29639																																																avrA	ABODEV010000004.1	174651..175519	100	869	0						
GCA_032868235.1_PDT001948088.1_genomic.fna	Salmonella_enterica	0.5199	153.949 KB	11	aroC_110,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2711	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_110	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABODEX010000001.1 Salmonella enterica strain PNUSAS393165 SAMN37883014-rid19908843.denovo.01, whole genome shotgun sequence	42641..43078	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABODEX010000063.1 Salmonella enterica strain PNUSAS393165 SAMN37883014-rid19908843.guided.56, whole genome shotgun sequence	715..1152	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABODEX010000043.1 Salmonella enterica strain PNUSAS393165 SAMN37883014-rid19908843.denovo.43, whole genome shotgun sequence	2610..3252																																																																	
GCA_032868255.1_PDT001948086.1_genomic.fna	Salmonella_enterica	0.5222	257.839 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODEZ010000002.1 Salmonella enterica strain PNUSAS393161 SAMN37883010-rid19908833.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODEZ010000043.1 Salmonella enterica strain PNUSAS393161 SAMN37883010-rid19908833.guided.32, whole genome shotgun sequence	13827..14264	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABODEZ010000017.1 Salmonella enterica strain PNUSAS393161 SAMN37883010-rid19908833.denovo.17, whole genome shotgun sequence	73572..74771	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABODEZ010000045.1 Salmonella enterica strain PNUSAS393161 SAMN37883010-rid19908833.guided.36, whole genome shotgun sequence	1744..2943	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	100	643 / 643	ABODEZ010000024.1 Salmonella enterica strain PNUSAS393161 SAMN37883010-rid19908833.denovo.24, whole genome shotgun sequence	44728..45370	enterobacteriales	IncFII(S)	100	262 / 262	ABODEZ010000024.1 Salmonella enterica strain PNUSAS393161 SAMN37883010-rid19908833.denovo.24, whole genome shotgun sequence	29382..29643		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABODEZ010000017.1 Salmonella enterica strain PNUSAS393161 SAMN37883010-rid19908833.denovo.17, whole genome shotgun sequence	83562..83703																																									avrA	ABODEZ010000001.1	446626..447494	100	869	0						
GCA_032868275.1_PDT001948087.1_genomic.fna	Salmonella_enterica	0.5204	118.337 KB	12	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pMET),pKPC-CAV1193	aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODEY010000001.1 Salmonella enterica strain PNUSAS393162 SAMN37883011-rid19907903.denovo.01, whole genome shotgun sequence	42644..43081	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODEY010000091.1 Salmonella enterica strain PNUSAS393162 SAMN37883011-rid19907903.guided.79, whole genome shotgun sequence	2377..2814	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pMET)	97.23	577 / 577	ABODEY010000061.1 Salmonella enterica strain PNUSAS393162 SAMN37883011-rid19907903.denovo.62, whole genome shotgun sequence	7497..8073	enterobacteriales	pKPC-CAV1193	98.86	612 / 612	ABODEY010000070.1 Salmonella enterica strain PNUSAS393162 SAMN37883011-rid19907903.denovo.72, whole genome shotgun sequence	879..1490																																																											
GCA_032868295.1_PDT001948083.1_genomic.fna	Salmonella_enterica	0.5177	461.202 KB	5	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABODFA010000002.1 Salmonella enterica strain PNUSAS393157 SAMN37883005-rid19908813.denovo.02, whole genome shotgun sequence	173323..173760	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABODFA010000035.1 Salmonella enterica strain PNUSAS393157 SAMN37883005-rid19908813.guided.23, whole genome shotgun sequence	6589..7026	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABODFA010000026.1 Salmonella enterica strain PNUSAS393157 SAMN37883005-rid19908813.denovo.29, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABODFA010000037.1 Salmonella enterica strain PNUSAS393157 SAMN37883005-rid19908813.guided.33, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABODFA010000026.1 Salmonella enterica strain PNUSAS393157 SAMN37883005-rid19908813.denovo.29, whole genome shotgun sequence	1150..1280																																																						avrA	ABODFA010000001.1	572908..573777	99.425	870	0						
GCA_032868315.1_PDT001948073.1_genomic.fna	Salmonella_enterica	0.5204	406.975 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	ColpVC,IncI(Gamma),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODFC010000001.1 Salmonella enterica strain PNUSAS393155 SAMN37883003-rid19908753.denovo.01, whole genome shotgun sequence	561022..561459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODFC010000041.1 Salmonella enterica strain PNUSAS393155 SAMN37883003-rid19908753.guided.28, whole genome shotgun sequence	926..1363	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	97.41	193 / 193	ABODFC010000029.1 Salmonella enterica strain PNUSAS393155 SAMN37883003-rid19908753.denovo.32, whole genome shotgun sequence	280..472	enterobacteriales	IncI(Gamma)	100	137 / 141	ABODFC010000025.1 Salmonella enterica strain PNUSAS393155 SAMN37883003-rid19908753.denovo.25, whole genome shotgun sequence	8337..8473		enterobacteriales	IncX1	94.65	374 / 374	ABODFC010000024.1 Salmonella enterica strain PNUSAS393155 SAMN37883003-rid19908753.denovo.24, whole genome shotgun sequence	30175..30548																																									avrA	ABODFC010000012.1	94851..95719	99.195	870	0						
GCA_032868325.1_PDT001948082.1_genomic.fna	Salmonella_enterica	0.5214	366.422 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODFB010000011.1 Salmonella enterica strain PNUSAS393160 SAMN37883008-rid19907883.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODFB010000035.1 Salmonella enterica strain PNUSAS393160 SAMN37883008-rid19907883.guided.27, whole genome shotgun sequence	6261..6698	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABODFB010000019.1 Salmonella enterica strain PNUSAS393160 SAMN37883008-rid19907883.denovo.19, whole genome shotgun sequence	34957..35490																																																						avrA	ABODFB010000003.1	39526..40392	98.966	870	0						
GCA_032868355.1_PDT001948053.1_genomic.fna	Salmonella_enterica	0.5166	201.904 KB	9	aroC_346,dnaN_439,hemD_8,hisD_125,purE_76,sucA_19,thrA_124	3006	9,46:y:1,7	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	3	IncFIA(HI1),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_346	dnaN	100	100	dnaN_439	hemD	100	100	hemD_8	hisD	100	100	hisD_125	purE	100	100	purE_76	sucA	100	100	sucA_19	thrA	100	100	thrA_124	9,46	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Benin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABODFE010000001.1 Salmonella enterica strain PNUSAS393381 SAMN37882737-rid19908633.denovo.01, whole genome shotgun sequence	42807..43244	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABODFE010000076.1 Salmonella enterica strain PNUSAS393381 SAMN37882737-rid19908633.guided.54, whole genome shotgun sequence	4053..4490	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABODFE010000025.1 Salmonella enterica strain PNUSAS393381 SAMN37882737-rid19908633.denovo.25, whole genome shotgun sequence	290..1495	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABODFE010000073.1 Salmonella enterica strain PNUSAS393381 SAMN37882737-rid19908633.guided.40, whole genome shotgun sequence	21928..23133	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIA(HI1)	100	388 / 388	ABODFE010000020.1 Salmonella enterica strain PNUSAS393381 SAMN37882737-rid19908633.denovo.20, whole genome shotgun sequence	51355..51742	enterobacteriales	IncHI1A	99.76	420 / 420	ABODFE010000026.1 Salmonella enterica strain PNUSAS393381 SAMN37882737-rid19908633.denovo.26, whole genome shotgun sequence	38442..38861		enterobacteriales	IncHI1B(R27)	100	540 / 540	ABODFE010000026.1 Salmonella enterica strain PNUSAS393381 SAMN37882737-rid19908633.denovo.26, whole genome shotgun sequence	24826..25365	R27																																								avrA	ABODFE010000005.1	174155..175024	98.966	870	0						
GCA_032868375.1_PDT001948035.1_genomic.fna	Salmonella_enterica	0.5213	440.094 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODFF010000001.1 Salmonella enterica strain PNUSAS393347 SAMN37882731-rid19908523.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODFF010000026.1 Salmonella enterica strain PNUSAS393347 SAMN37882731-rid19908523.guided.15, whole genome shotgun sequence	36807..37244	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODFF010000017.1 Salmonella enterica strain PNUSAS393347 SAMN37882731-rid19908523.denovo.19, whole genome shotgun sequence	6836..7478	enterobacteriales	IncFII(S)	100	262 / 262	ABODFF010000018.1 Salmonella enterica strain PNUSAS393347 SAMN37882731-rid19908523.denovo.21, whole genome shotgun sequence	3403..3664																																																avrA	ABODFF010000003.1	175197..176066	99.54	870	0						
GCA_032868395.1_PDT001948065.1_genomic.fna	Salmonella_enterica	0.5209	320.094 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	1	gyrA_p.S83F	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODFD010000004.1 Salmonella enterica strain PNUSAS393397 SAMN37882779-rid19908703.denovo.04, whole genome shotgun sequence	159451..159888	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODFD010000024.1 Salmonella enterica strain PNUSAS393397 SAMN37882779-rid19908703.denovo.24, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODFD010000024.1 Salmonella enterica strain PNUSAS393397 SAMN37882779-rid19908703.denovo.24, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABODFD010000037.1 Salmonella enterica strain PNUSAS393397 SAMN37882779-rid19908703.guided.30, whole genome shotgun sequence	9702..10139	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODFD010000038.1 Salmonella enterica strain PNUSAS393397 SAMN37882779-rid19908703.guided.31, whole genome shotgun sequence	1905..2741	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODFD010000038.1 Salmonella enterica strain PNUSAS393397 SAMN37882779-rid19908703.guided.31, whole genome shotgun sequence	1102..1905	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABODFD010000024.1 Salmonella enterica strain PNUSAS393397 SAMN37882779-rid19908703.denovo.24, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABODFD010000039.1 Salmonella enterica strain PNUSAS393397 SAMN37882779-rid19908703.guided.33, whole genome shotgun sequence	2282..3427	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABODFD010000024.1 Salmonella enterica strain PNUSAS393397 SAMN37882779-rid19908703.denovo.24, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABODFD010000038.1 Salmonella enterica strain PNUSAS393397 SAMN37882779-rid19908703.guided.31, whole genome shotgun sequence	226..1041	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABODFD010000024.1 Salmonella enterica strain PNUSAS393397 SAMN37882779-rid19908703.denovo.24, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABODFD010000038.1 Salmonella enterica strain PNUSAS393397 SAMN37882779-rid19908703.guided.31, whole genome shotgun sequence	4002..5276	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABODFD010000023.1 Salmonella enterica strain PNUSAS393397 SAMN37882779-rid19908703.denovo.23, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABODFD010000019.1 Salmonella enterica strain PNUSAS393397 SAMN37882779-rid19908703.denovo.19, whole genome shotgun sequence	16913..17172		enterobacteriales	IncX1	98.66	374 / 374	ABODFD010000019.1 Salmonella enterica strain PNUSAS393397 SAMN37882779-rid19908703.denovo.19, whole genome shotgun sequence	52767..53140																																									avrA	ABODFD010000001.1	504479..505347	99.54	870	0						
GCA_032868415.1_PDT001948020.1_genomic.fna	Salmonella_enterica	0.5209	282.844 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODFG010000001.1 Salmonella enterica strain PNUSAS393357 SAMN37882698-rid19907613.denovo.01, whole genome shotgun sequence	580914..581351	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODFG010000052.1 Salmonella enterica strain PNUSAS393357 SAMN37882698-rid19907613.guided.31, whole genome shotgun sequence	5555..5992	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABODFG010000029.1 Salmonella enterica strain PNUSAS393357 SAMN37882698-rid19907613.denovo.30, whole genome shotgun sequence	10940..12145	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABODFG010000053.1 Salmonella enterica strain PNUSAS393357 SAMN37882698-rid19907613.guided.32, whole genome shotgun sequence	2594..3799	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABODFG010000054.1 Salmonella enterica strain PNUSAS393357 SAMN37882698-rid19907613.guided.33, whole genome shotgun sequence	2594..3798	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				avrA	ABODFG010000002.1	654515..655384	99.885	870	0						
GCA_032868455.1_PDT001948015.1_genomic.fna	Salmonella_enterica	0.5225	625.957 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODFJ010000001.1 Salmonella enterica strain PNUSAS393356 SAMN37882694-rid19907583.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABODFJ010000022.1 Salmonella enterica strain PNUSAS393356 SAMN37882694-rid19907583.guided.16, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODFJ010000002.1	553685..554554	99.655	870	0						
GCA_032868475.1_PDT001948018.1_genomic.fna	Salmonella_enterica	0.5211	267.822 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODFI010000001.1 Salmonella enterica strain PNUSAS393348 SAMN37882693-rid19908453.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODFI010000051.1 Salmonella enterica strain PNUSAS393348 SAMN37882693-rid19908453.guided.28, whole genome shotgun sequence	19482..19919	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABODFI010000017.1 Salmonella enterica strain PNUSAS393348 SAMN37882693-rid19908453.denovo.17, whole genome shotgun sequence	79503..79644																																																						avrA	ABODFI010000007.1	94139..95007	99.77	870	0						
GCA_032868515.1_PDT001948014.1_genomic.fna	Salmonella_enterica	0.5221	558.057 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABODFK010000001.1 Salmonella enterica strain PNUSAS393341 SAMN37882691-rid19907573.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABODFK010000025.1 Salmonella enterica strain PNUSAS393341 SAMN37882691-rid19907573.guided.20, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODFK010000002.1	138353..139222	98.966	870	0						
GCA_032868595.1_PDT001947987.1_genomic.fna	Salmonella_enterica	0.5213	398.37 KB	4	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	2	aac(6')-Iaa,aac(6')-Iaa,tet(C),tet(C)	1	parC_p.T57S	2	Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODFQ010000001.1 Salmonella enterica strain PNUSAS393278 SAMN37881327-rid19907413.denovo.01, whole genome shotgun sequence	349836..350273	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODFQ010000030.1 Salmonella enterica strain PNUSAS393278 SAMN37881327-rid19907413.guided.22, whole genome shotgun sequence	15159..15596	Amikacin, Tobramycin	NC_003197	tet(C)	100	1160/1176	ABODFQ010000017.1 Salmonella enterica strain PNUSAS393278 SAMN37881327-rid19907413.denovo.18, whole genome shotgun sequence	4092..5251	Doxycycline, Tetracycline	AY046276	tet(C)	100	1160/1176	ABODFQ010000031.1 Salmonella enterica strain PNUSAS393278 SAMN37881327-rid19907413.guided.23, whole genome shotgun sequence	10244..11403	Doxycycline, Tetracycline	AY046276																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABODFQ010000021.1 Salmonella enterica strain PNUSAS393278 SAMN37881327-rid19907413.denovo.25, whole genome shotgun sequence	2246..2354	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABODFQ010000018.1 Salmonella enterica strain PNUSAS393278 SAMN37881327-rid19907413.denovo.19, whole genome shotgun sequence	22269..22410																																																avrA	ABODFQ010000003.1	140425..141294	98.966	870	0						
GCA_032868655.1_PDT001947986.1_genomic.fna	Salmonella_enterica	0.5214	288.263 KB	5	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODFR010000001.1 Salmonella enterica strain PNUSAS393286 SAMN37881333-rid19908323.denovo.01, whole genome shotgun sequence	645053..645490	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABODFR010000031.1 Salmonella enterica strain PNUSAS393286 SAMN37881333-rid19908323.guided.24, whole genome shotgun sequence	4997..5434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODFR010000005.1	182112..182980	99.655	870	0						
GCA_032868675.1_PDT001947985.1_genomic.fna	Salmonella_enterica	0.5214	363.907 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODFS010000001.1 Salmonella enterica strain PNUSAS393274 SAMN37881323-rid19907403.denovo.01, whole genome shotgun sequence	486997..487434	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODFS010000031.1 Salmonella enterica strain PNUSAS393274 SAMN37881323-rid19907403.guided.26, whole genome shotgun sequence	1677..2114	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABODFS010000014.1 Salmonella enterica strain PNUSAS393274 SAMN37881323-rid19907403.denovo.14, whole genome shotgun sequence	68235..68376																																																						avrA	ABODFS010000007.1	173492..174360	99.425	870	0						
GCA_032868695.1_PDT001947982.1_genomic.fna	Salmonella_enterica	0.5212	439.9 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODFW010000001.1 Salmonella enterica strain PNUSAS393282 SAMN37881331-rid19907383.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODFW010000032.1 Salmonella enterica strain PNUSAS393282 SAMN37881331-rid19907383.guided.26, whole genome shotgun sequence	489..926	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODFW010000020.1 Salmonella enterica strain PNUSAS393282 SAMN37881331-rid19907383.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABODFW010000022.1 Salmonella enterica strain PNUSAS393282 SAMN37881331-rid19907383.denovo.23, whole genome shotgun sequence	3404..3665																																																avrA	ABODFW010000004.1	175196..176065	99.54	870	0						
GCA_032868715.1_PDT001947984.1_genomic.fna	Salmonella_enterica	0.5213	490 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODFT010000001.1 Salmonella enterica strain PNUSAS393280 SAMN37881325-rid19907393.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODFT010000029.1 Salmonella enterica strain PNUSAS393280 SAMN37881325-rid19907393.guided.23, whole genome shotgun sequence	3445..3882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODFT010000018.1 Salmonella enterica strain PNUSAS393280 SAMN37881325-rid19907393.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABODFT010000019.1 Salmonella enterica strain PNUSAS393280 SAMN37881325-rid19907393.denovo.21, whole genome shotgun sequence	3407..3668																																																avrA	ABODFT010000002.1	552715..553584	99.54	870	0						
GCA_032868735.1_PDT001947983.1_genomic.fna	Salmonella_enterica	0.5211	341.38 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODFU010000003.1 Salmonella enterica strain PNUSAS393284 SAMN37881329-rid19908313.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODFU010000044.1 Salmonella enterica strain PNUSAS393284 SAMN37881329-rid19908313.guided.27, whole genome shotgun sequence	2337..2774	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABODFU010000022.1 Salmonella enterica strain PNUSAS393284 SAMN37881329-rid19908313.denovo.22, whole genome shotgun sequence	44721..45363	enterobacteriales	IncFII(S)	100	262 / 262	ABODFU010000022.1 Salmonella enterica strain PNUSAS393284 SAMN37881329-rid19908313.denovo.22, whole genome shotgun sequence	29375..29636																																																avrA	ABODFU010000005.1	174355..175223	100	869	0						
GCA_032868755.1_PDT001947981.1_genomic.fna	Salmonella_enterica	0.5215	246.744 KB	7	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODFV010000007.1 Salmonella enterica strain PNUSAS393279 SAMN37881326-rid19908303.denovo.07, whole genome shotgun sequence	133775..134212	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODFV010000040.1 Salmonella enterica strain PNUSAS393279 SAMN37881326-rid19908303.guided.32, whole genome shotgun sequence	3087..3524	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032868775.1_PDT001947979.1_genomic.fna	Salmonella_enterica	0.5222	380.128 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODFY010000001.1 Salmonella enterica strain PNUSAS393277 SAMN37881320-rid19907363.denovo.01, whole genome shotgun sequence	684248..684685	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODFY010000026.1 Salmonella enterica strain PNUSAS393277 SAMN37881320-rid19907363.guided.19, whole genome shotgun sequence	7651..8088	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODFY010000005.1	148520..149389	99.77	870	0						
GCA_032868795.1_PDT001947980.1_genomic.fna	Salmonella_enterica	0.5204	178.707 KB	10	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODFX010000006.1 Salmonella enterica strain PNUSAS393287 SAMN37881332-rid19907373.denovo.06, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABODFX010000058.1 Salmonella enterica strain PNUSAS393287 SAMN37881332-rid19907373.guided.45, whole genome shotgun sequence	3102..3539	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODFX010000059.1 Salmonella enterica strain PNUSAS393287 SAMN37881332-rid19907373.guided.46, whole genome shotgun sequence	3102..3539	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODFX010000001.1	136324..137192	99.31	870	0						
GCA_032868815.1_PDT001947978.1_genomic.fna	Salmonella_enterica	0.5226	397.412 KB	5	aroC_46,dnaN_7,hemD_47,hisD_12,purE_36,sucA_19,thrA_18	2262	11:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_7	hemD	100	100	hemD_47	hisD	100	100	hisD_12	purE	100	100	purE_36	sucA	100	100	sucA_19	thrA	100	100	thrA_18	11	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Aberdeen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABODFZ010000001.1 Salmonella enterica strain PNUSAS393285 SAMN37881328-rid19908293.denovo.01, whole genome shotgun sequence	471229..471666	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABODFZ010000030.1 Salmonella enterica strain PNUSAS393285 SAMN37881328-rid19908293.guided.23, whole genome shotgun sequence	1593..2030	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODFZ010000010.1	122862..123731	99.655	870	0						
GCA_032868835.1_PDT001947977.1_genomic.fna	Salmonella_enterica	0.5207	246.034 KB	7	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODGA010000001.1 Salmonella enterica strain PNUSAS393283 SAMN37881330-rid19907353.denovo.01, whole genome shotgun sequence	414330..414767	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODGA010000043.1 Salmonella enterica strain PNUSAS393283 SAMN37881330-rid19907353.guided.33, whole genome shotgun sequence	2337..2774	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODGA010000003.1	150789..151659	99.196	871	0						
GCA_032869075.1_PDT001948063.1_genomic.fna	Salmonella_enterica	0.5218	505.129 KB	4	aroC_18,dnaN_7,hemD_47,hisD_9,purE_5,sucA_526,thrA_22	2562	4:z4,z23:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_7	hemD	100	100	hemD_47	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_526	thrA	100	100	thrA_22	4	z4,z23	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanleyville		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODGN010000001.1 Salmonella enterica strain PNUSAS393392 SAMN37882780-rid19908693.denovo.01, whole genome shotgun sequence	779960..780397	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODGN010000024.1 Salmonella enterica strain PNUSAS393392 SAMN37882780-rid19908693.guided.15, whole genome shotgun sequence	15725..16162	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABODGN010000003.1 Salmonella enterica strain PNUSAS393392 SAMN37882780-rid19908693.denovo.03, whole genome shotgun sequence	397378..397800	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABODGN010000025.1 Salmonella enterica strain PNUSAS393392 SAMN37882780-rid19908693.guided.17, whole genome shotgun sequence	16767..17189	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODGN010000002.1	564667..565536	99.54	870	0						
GCA_032869705.1_PDT001948096.1_genomic.fna	Salmonella_enterica	0.5198	402.798 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODHS010000001.1 Salmonella enterica strain PNUSAS393168 SAMN37883114-rid19907963.denovo.01, whole genome shotgun sequence	1100399..1100836	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODHS010000031.1 Salmonella enterica strain PNUSAS393168 SAMN37883114-rid19907963.guided.23, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABODHS010000015.1 Salmonella enterica strain PNUSAS393168 SAMN37883114-rid19907963.denovo.16, whole genome shotgun sequence	6118..6651	enterobacteriales	IncX1	98.4	374 / 374	ABODHS010000018.1 Salmonella enterica strain PNUSAS393168 SAMN37883114-rid19907963.denovo.19, whole genome shotgun sequence	6956..7329																																																avrA	ABODHS010000008.1	150695..151565	99.196	871	0						
GCA_032869725.1_PDT001948030.1_genomic.fna	Salmonella_enterica	0.522	354.932 KB	4	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABODHT010000001.1 Salmonella enterica strain PNUSAS393349 SAMN37882722-rid19908493.denovo.01, whole genome shotgun sequence	696688..697125	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.25	402/438	ABODHT010000030.1 Salmonella enterica strain PNUSAS393349 SAMN37882722-rid19908493.guided.22, whole genome shotgun sequence	2..403	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(S)	93.16	643 / 643	ABODHT010000014.1 Salmonella enterica strain PNUSAS393349 SAMN37882722-rid19908493.denovo.14, whole genome shotgun sequence	65856..66498	enterobacteriales	IncFII(S)	97.34	263 / 262	ABODHT010000014.1 Salmonella enterica strain PNUSAS393349 SAMN37882722-rid19908493.denovo.14, whole genome shotgun sequence	28710..28969																																																avrA	ABODHT010000002.1	557091..557959	99.425	870	0						
GCA_032869745.1_PDT001948084.1_genomic.fna	Salmonella_enterica	0.5184	203.371 KB	11	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABODHU010000018.1 Salmonella enterica strain PNUSAS393294 SAMN37883009-rid19907893.denovo.018, whole genome shotgun sequence	43446..43883	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABODHU010000117.1 Salmonella enterica strain PNUSAS393294 SAMN37883009-rid19907893.guided.057, whole genome shotgun sequence	2367..2804	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODHU010000001.1	93995..94864	99.31	870	0						
GCA_032869825.1_PDT001948046.1_genomic.fna	Salmonella_enterica	0.5214	490.001 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODHV010000001.1 Salmonella enterica strain PNUSAS393352 SAMN37882730-rid19908593.denovo.01, whole genome shotgun sequence	774495..774932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODHV010000027.1 Salmonella enterica strain PNUSAS393352 SAMN37882730-rid19908593.guided.20, whole genome shotgun sequence	138..575	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODHV010000016.1 Salmonella enterica strain PNUSAS393352 SAMN37882730-rid19908593.denovo.16, whole genome shotgun sequence	6838..7480	enterobacteriales	IncFII(S)	100	262 / 262	ABODHV010000017.1 Salmonella enterica strain PNUSAS393352 SAMN37882730-rid19908593.denovo.18, whole genome shotgun sequence	3446..3707																																																avrA	ABODHV010000002.1	553624..554493	99.54	870	0						
GCA_032869845.1_PDT001947976.1_genomic.fna	Salmonella_enterica	0.5215	299.021 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODHW010000001.1 Salmonella enterica strain PNUSAS393276 SAMN37881321-rid19908283.denovo.01, whole genome shotgun sequence	423472..423909	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODHW010000044.1 Salmonella enterica strain PNUSAS393276 SAMN37881321-rid19908283.guided.25, whole genome shotgun sequence	10325..10762	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODHW010000002.1	394792..395660	99.425	870	0						
GCA_032869955.1_PDT001948193.1_genomic.fna	Salmonella_enterica	0.521	640.838 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODIB010000001.1 Salmonella enterica strain PNUSAS393529 SAMN37884546-rid19909623.denovo.01, whole genome shotgun sequence	510589..511026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODIB010000028.1 Salmonella enterica strain PNUSAS393529 SAMN37884546-rid19909623.guided.18, whole genome shotgun sequence	8022..8459	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODIB010000004.1	544630..545498	99.425	870	0						
GCA_032870035.1_PDT001948148.1_genomic.fna	Salmonella_enterica	0.5216	361.532 KB	4	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODIC010000001.1 Salmonella enterica strain PNUSAS393513 SAMN37883998-rid19909183.denovo.01, whole genome shotgun sequence	500870..501307	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODIC010000023.1 Salmonella enterica strain PNUSAS393513 SAMN37883998-rid19909183.guided.20, whole genome shotgun sequence	11118..11555	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODIC010000004.1	189445..190314	98.966	870	0						
GCA_032870095.1_PDT001948234.1_genomic.fna	Salmonella_enterica	0.5214	271.271 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODIE010000001.1 Salmonella enterica strain PNUSAS393549 SAMN37885304-rid19909983.denovo.01, whole genome shotgun sequence	571190..571627	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODIE010000051.1 Salmonella enterica strain PNUSAS393549 SAMN37885304-rid19909983.guided.25, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODIE010000002.1	434604..435473	99.885	870	0						
GCA_032870115.1_PDT001948226.1_genomic.fna	Salmonella_enterica	0.5164	183.21 KB	9	aroC_597,dnaN_28,hemD_472,hisD_151,purE_22,sucA_29,thrA_30	2882	50:g,z51:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1A,blaTEM-1A	1	parC_p.T57S	1	IncFII(pRSB107),IncFII(pRSB107)	aroC	100	100	aroC_597	dnaN	100	100	dnaN_28	hemD	100	100	hemD_472	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABODID010000010.1 Salmonella enterica strain PNUSAS393548 SAMN37884788-rid19909953.denovo.10, whole genome shotgun sequence	5052..5489	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABODID010000064.1 Salmonella enterica strain PNUSAS393548 SAMN37884788-rid19909953.guided.47, whole genome shotgun sequence	4234..4671	Amikacin, Tobramycin	NC_003197	blaTEM-1A	100	861/861	ABODID010000022.1 Salmonella enterica strain PNUSAS393548 SAMN37884788-rid19909953.denovo.22, whole genome shotgun sequence	43456..44316	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABODID010000061.1 Salmonella enterica strain PNUSAS393548 SAMN37884788-rid19909953.guided.37, whole genome shotgun sequence	12580..13440	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pRSB107)	96.18	262 / 261	ABODID010000022.1 Salmonella enterica strain PNUSAS393548 SAMN37884788-rid19909953.denovo.22, whole genome shotgun sequence	39705..39966	enterobacteriales	IncFII(pRSB107)	96.18	262 / 261	ABODID010000061.1 Salmonella enterica strain PNUSAS393548 SAMN37884788-rid19909953.guided.37, whole genome shotgun sequence	16930..17191																																																											
GCA_032870135.1_PDT001948220.1_genomic.fna	Salmonella_enterica	0.5215	174.216 KB	8	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODIG010000001.1 Salmonella enterica strain PNUSAS393540 SAMN37884716-rid19909893.denovo.01, whole genome shotgun sequence	133775..134212	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODIG010000044.1 Salmonella enterica strain PNUSAS393540 SAMN37884716-rid19909893.guided.33, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABODIG010000035.1 Salmonella enterica strain PNUSAS393540 SAMN37884716-rid19909893.denovo.38, whole genome shotgun sequence	1604..1734																																																																	
GCA_032870155.1_PDT001948232.1_genomic.fna	Salmonella_enterica	0.5217	171.964 KB	12	aroC_17,dnaN_8,hemD_3,hisD_14,purE_97,sucA_19,thrA_14	1583	4:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_8	hemD	100	100	hemD_3	hisD	100	100	hisD_14	purE	100	100	purE_97	sucA	100	100	sucA_19	thrA	100	100	thrA_14	4	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Abony		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODIK010000013.1 Salmonella enterica strain PNUSAS393551 SAMN37885303-rid19909963.denovo.13, whole genome shotgun sequence	101171..101608	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODIK010000056.1 Salmonella enterica strain PNUSAS393551 SAMN37885303-rid19909963.guided.34, whole genome shotgun sequence	32766..33203	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODIK010000008.1	39460..40329	99.31	870	0						
GCA_032870175.1_PDT001948219.1_genomic.fna	Salmonella_enterica	0.5211	387.059 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODIF010000004.1 Salmonella enterica strain PNUSAS393544 SAMN37884717-rid19909883.denovo.04, whole genome shotgun sequence	255909..256346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODIF010000030.1 Salmonella enterica strain PNUSAS393544 SAMN37884717-rid19909883.guided.25, whole genome shotgun sequence	339..776	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODIF010000002.1	497983..498851	99.425	870	0						
GCA_032870195.1_PDT001948225.1_genomic.fna	Salmonella_enterica	0.5203	459.202 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODII010000001.1 Salmonella enterica strain PNUSAS393542 SAMN37884786-rid19909943.denovo.01, whole genome shotgun sequence	136574..137011	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODII010000022.1 Salmonella enterica strain PNUSAS393542 SAMN37884786-rid19909943.guided.18, whole genome shotgun sequence	8088..8525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABODII010000013.1 Salmonella enterica strain PNUSAS393542 SAMN37884786-rid19909943.denovo.13, whole genome shotgun sequence	34957..35490																																																						avrA	ABODII010000003.1	526745..527613	99.425	870	0						
GCA_032870215.1_PDT001948222.1_genomic.fna	Salmonella_enterica	0.5211	438.241 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODIJ010000001.1 Salmonella enterica strain PNUSAS393545 SAMN37884787-rid19909913.denovo.01, whole genome shotgun sequence	177335..177772	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODIJ010000036.1 Salmonella enterica strain PNUSAS393545 SAMN37884787-rid19909913.guided.14, whole genome shotgun sequence	17764..18201	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODIJ010000003.1	109070..109939	99.77	870	0						
GCA_032870245.1_PDT001948218.1_genomic.fna	Salmonella_enterica	0.52	285.625 KB	7	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_107	307	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_107	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODIH010000002.1 Salmonella enterica strain PNUSAS393543 SAMN37884715-rid19909873.denovo.02, whole genome shotgun sequence	380332..380769	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODIH010000043.1 Salmonella enterica strain PNUSAS393543 SAMN37884715-rid19909873.guided.25, whole genome shotgun sequence	18189..18626	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032870335.1_PDT001948194.1_genomic.fna	Salmonella_enterica	0.5195	308.109 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODIQ010000001.1 Salmonella enterica strain PNUSAS393530 SAMN37884555-rid19909633.denovo.01, whole genome shotgun sequence	486124..486561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODIQ010000042.1 Salmonella enterica strain PNUSAS393530 SAMN37884555-rid19909633.guided.21, whole genome shotgun sequence	8093..8530	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABODIQ010000003.1 Salmonella enterica strain PNUSAS393530 SAMN37884555-rid19909633.denovo.03, whole genome shotgun sequence	388752..389174	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABODIQ010000044.1 Salmonella enterica strain PNUSAS393530 SAMN37884555-rid19909633.guided.30, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODIQ010000002.1	120555..121424	99.195	870	0						
GCA_032870355.1_PDT001948192.1_genomic.fna	Salmonella_enterica	0.5219	324.384 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODIS010000003.1 Salmonella enterica strain PNUSAS393531 SAMN37884554-rid19909613.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODIS010000050.1 Salmonella enterica strain PNUSAS393531 SAMN37884554-rid19909613.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABODIS010000029.1 Salmonella enterica strain PNUSAS393531 SAMN37884554-rid19909613.denovo.30, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABODIS010000025.1 Salmonella enterica strain PNUSAS393531 SAMN37884554-rid19909613.denovo.26, whole genome shotgun sequence	29366..29627																																																avrA	ABODIS010000001.1	446791..447659	100	869	0						
GCA_032870375.1_PDT001948196.1_genomic.fna	Salmonella_enterica	0.5209	338.027 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODIO010000001.1 Salmonella enterica strain PNUSAS393520 SAMN37884556-rid19909653.denovo.01, whole genome shotgun sequence	235402..235839	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABODIO010000028.1 Salmonella enterica strain PNUSAS393520 SAMN37884556-rid19909653.denovo.28, whole genome shotgun sequence	24004..24537																																																						avrA	ABODIO010000011.1	95244..96113	99.195	870	0						
GCA_032870395.1_PDT001948189.1_genomic.fna	Salmonella_enterica	0.5204	708.08 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODIR010000001.1 Salmonella enterica strain PNUSAS393528 SAMN37884550-rid19909583.denovo.01, whole genome shotgun sequence	398565..399002	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODIR010000029.1 Salmonella enterica strain PNUSAS393528 SAMN37884550-rid19909583.guided.18, whole genome shotgun sequence	2189..2626	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODIR010000003.1	508653..509521	99.425	870	0						
GCA_032870415.1_PDT001948188.1_genomic.fna	Salmonella_enterica	0.5208	402.456 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODIT010000001.1 Salmonella enterica strain PNUSAS393521 SAMN37884553-rid19909573.denovo.01, whole genome shotgun sequence	414575..415012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODIT010000026.1 Salmonella enterica strain PNUSAS393521 SAMN37884553-rid19909573.guided.17, whole genome shotgun sequence	11021..11458	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032870435.1_PDT001948185.1_genomic.fna	Salmonella_enterica	0.5218	333.309 KB	6	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODIU010000002.1 Salmonella enterica strain PNUSAS393523 SAMN37884557-rid19909543.denovo.02, whole genome shotgun sequence	39577..40014	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODIU010000038.1 Salmonella enterica strain PNUSAS393523 SAMN37884557-rid19909543.guided.24, whole genome shotgun sequence	20585..21022	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODIU010000007.1	148153..149022	99.77	870	0						
GCA_032870455.1_PDT001948186.1_genomic.fna	Salmonella_enterica	0.5209	271.152 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODIV010000001.1 Salmonella enterica strain PNUSAS393527 SAMN37884547-rid19909553.denovo.01, whole genome shotgun sequence	482538..482975	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODIV010000039.1 Salmonella enterica strain PNUSAS393527 SAMN37884547-rid19909553.denovo.44, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODIV010000039.1 Salmonella enterica strain PNUSAS393527 SAMN37884547-rid19909553.denovo.44, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABODIV010000070.1 Salmonella enterica strain PNUSAS393527 SAMN37884547-rid19909553.guided.29, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODIV010000074.1 Salmonella enterica strain PNUSAS393527 SAMN37884547-rid19909553.guided.43, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODIV010000074.1 Salmonella enterica strain PNUSAS393527 SAMN37884547-rid19909553.guided.43, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABODIV010000046.1 Salmonella enterica strain PNUSAS393527 SAMN37884547-rid19909553.denovo.52, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABODIV010000075.1 Salmonella enterica strain PNUSAS393527 SAMN37884547-rid19909553.guided.51, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABODIV010000039.1 Salmonella enterica strain PNUSAS393527 SAMN37884547-rid19909553.denovo.44, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABODIV010000074.1 Salmonella enterica strain PNUSAS393527 SAMN37884547-rid19909553.guided.43, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABODIV010000032.1 Salmonella enterica strain PNUSAS393527 SAMN37884547-rid19909553.denovo.35, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABODIV010000073.1 Salmonella enterica strain PNUSAS393527 SAMN37884547-rid19909553.guided.36, whole genome shotgun sequence	9820..11025	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABODIV010000002.1	539647..540516	99.885	870	0						
GCA_032870475.1_PDT001948183.1_genomic.fna	Salmonella_enterica	0.5211	251.428 KB	7	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_19,thrA_1	679	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODIX010000012.1 Salmonella enterica strain PNUSAS393525 SAMN37884551-rid19909523.denovo.12, whole genome shotgun sequence	37880..38317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODIX010000054.1 Salmonella enterica strain PNUSAS393525 SAMN37884551-rid19909523.guided.25, whole genome shotgun sequence	20990..21427	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODIX010000013.1	39485..40350	98.966	870	0						
GCA_032870495.1_PDT001948184.1_genomic.fna	Salmonella_enterica	0.5204	309.604 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	1	parC_p.T57S	2	IncFII(pHN7A8),IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODIW010000001.1 Salmonella enterica strain PNUSAS393526 SAMN37884552-rid19909533.denovo.01, whole genome shotgun sequence	167933..168370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODIW010000045.1 Salmonella enterica strain PNUSAS393526 SAMN37884552-rid19909533.guided.22, whole genome shotgun sequence	3681..4118	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABODIW010000020.1 Salmonella enterica strain PNUSAS393526 SAMN37884552-rid19909533.denovo.20, whole genome shotgun sequence	14295..15155	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABODIW010000049.1 Salmonella enterica strain PNUSAS393526 SAMN37884552-rid19909533.guided.31, whole genome shotgun sequence	9167..10027	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pHN7A8)	96.92	260 / 260	ABODIW010000020.1 Salmonella enterica strain PNUSAS393526 SAMN37884552-rid19909533.denovo.20, whole genome shotgun sequence	10370..10629	enterobacteriales	IncI1-I(Alpha)	98.59	142 / 142	ABODIW010000021.1 Salmonella enterica strain PNUSAS393526 SAMN37884552-rid19909533.denovo.21, whole genome shotgun sequence	19191..19332																																																avrA	ABODIW010000002.1	144995..145864	99.31	870	0						
GCA_032870515.1_PDT001948173.1_genomic.fna	Salmonella_enterica	0.5213	376.533 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODIZ010000002.1 Salmonella enterica strain PNUSAS393505 SAMN37884402-rid19909423.denovo.02, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																avrA	ABODIZ010000001.1	452571..453439	100	869	0						
GCA_032870535.1_PDT001948157.1_genomic.fna	Salmonella_enterica	0.5209	655.978 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODJA010000001.1 Salmonella enterica strain PNUSAS393500 SAMN37884004-rid19909273.denovo.01, whole genome shotgun sequence	383554..383991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODJA010000046.1 Salmonella enterica strain PNUSAS393500 SAMN37884004-rid19909273.guided.26, whole genome shotgun sequence	3020..3457	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODJA010000003.1	504310..505180	99.196	871	0						
GCA_032870555.1_PDT001948170.1_genomic.fna	Salmonella_enterica	0.5212	406.409 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	gyrA_p.D87G	3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODIY010000003.1 Salmonella enterica strain PNUSAS393507 SAMN37884401-rid19909403.denovo.03, whole genome shotgun sequence	293278..293715	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODIY010000032.1 Salmonella enterica strain PNUSAS393507 SAMN37884401-rid19909403.guided.23, whole genome shotgun sequence	4425..4862	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABODIY010000022.1 Salmonella enterica strain PNUSAS393507 SAMN37884401-rid19909403.denovo.24, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABODIY010000033.1 Salmonella enterica strain PNUSAS393507 SAMN37884401-rid19909403.guided.28, whole genome shotgun sequence	545..1189	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																enterobacteriales	Col(pHAD28)	100	131 / 131	ABODIY010000022.1 Salmonella enterica strain PNUSAS393507 SAMN37884401-rid19909403.denovo.24, whole genome shotgun sequence	1519..1649	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODIY010000020.1 Salmonella enterica strain PNUSAS393507 SAMN37884401-rid19909403.denovo.20, whole genome shotgun sequence	6834..7476		enterobacteriales	IncFII(S)	100	262 / 262	ABODIY010000021.1 Salmonella enterica strain PNUSAS393507 SAMN37884401-rid19909403.denovo.22, whole genome shotgun sequence	3402..3663																																									avrA	ABODIY010000001.1	140720..141589	99.54	870	0						
GCA_032870575.1_PDT001948155.1_genomic.fna	Salmonella_enterica	0.5214	401.018 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODJB010000001.1 Salmonella enterica strain PNUSAS393510 SAMN37884000-rid19909253.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODJB010000027.1 Salmonella enterica strain PNUSAS393510 SAMN37884000-rid19909253.guided.24, whole genome shotgun sequence	2333..2770	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODJB010000019.1 Salmonella enterica strain PNUSAS393510 SAMN37884000-rid19909253.denovo.19, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABODJB010000021.1 Salmonella enterica strain PNUSAS393510 SAMN37884000-rid19909253.denovo.23, whole genome shotgun sequence	3392..3653																																																avrA	ABODJB010000002.1	174837..175706	99.54	870	0						
GCA_032870595.1_PDT001948154.1_genomic.fna	Salmonella_enterica	0.5218	270.942 KB	5	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODJD010000001.1 Salmonella enterica strain PNUSAS393501 SAMN37884003-rid19909243.denovo.01, whole genome shotgun sequence	597784..598221	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODJD010000030.1 Salmonella enterica strain PNUSAS393501 SAMN37884003-rid19909243.guided.22, whole genome shotgun sequence	8722..9159	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABODJD010000023.1 Salmonella enterica strain PNUSAS393501 SAMN37884003-rid19909243.denovo.26, whole genome shotgun sequence	2209..2339																																																						avrA	ABODJD010000002.1	558781..559650	99.425	870	0						
GCA_032870615.1_PDT001948151.1_genomic.fna	Salmonella_enterica	0.5216	682.606 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODJC010000001.1 Salmonella enterica strain PNUSAS393512 SAMN37883999-rid19909213.denovo.01, whole genome shotgun sequence	486956..487393	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODJC010000022.1 Salmonella enterica strain PNUSAS393512 SAMN37883999-rid19909213.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODJC010000002.1	544607..545475	99.425	870	0						
GCA_032870635.1_PDT001948150.1_genomic.fna	Salmonella_enterica	0.521	149.167 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrB_p.S464F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABODJE010000007.1 Salmonella enterica strain PNUSAS393506 SAMN37883995-rid19909203.denovo.07, whole genome shotgun sequence	30006..30440	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABODJE010000063.1 Salmonella enterica strain PNUSAS393506 SAMN37883995-rid19909203.guided.52, whole genome shotgun sequence	3348..3782	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrB p.S464F	TCT -> TTC	S -> F	Ciprofloxacin	27896141																																																																																						
GCA_032870655.1_PDT001948147.1_genomic.fna	Salmonella_enterica	0.5208	525.98 KB	4	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODJF010000002.1 Salmonella enterica strain PNUSAS393511 SAMN37883993-rid19909173.denovo.02, whole genome shotgun sequence	172187..172624	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABODJF010000025.1 Salmonella enterica strain PNUSAS393511 SAMN37883993-rid19909173.guided.17, whole genome shotgun sequence	21819..22256	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABODJF010000017.1 Salmonella enterica strain PNUSAS393511 SAMN37883993-rid19909173.denovo.20, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABODJF010000027.1 Salmonella enterica strain PNUSAS393511 SAMN37883993-rid19909173.guided.21, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODJF010000006.1	50675..51544	99.77	870	0						
GCA_032870675.1_PDT001948146.1_genomic.fna	Salmonella_enterica	0.5218	564.866 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODJG010000001.1 Salmonella enterica strain PNUSAS393508 SAMN37883994-rid19909163.denovo.01, whole genome shotgun sequence	502338..502775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODJG010000025.1 Salmonella enterica strain PNUSAS393508 SAMN37883994-rid19909163.guided.24, whole genome shotgun sequence	693..1130	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODJG010000002.1	544607..545475	99.425	870	0						
GCA_032870695.1_PDT001948144.1_genomic.fna	Salmonella_enterica	0.5213	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODJI010000001.1 Salmonella enterica strain PNUSAS393504 SAMN37883996-rid19909143.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODJI010000025.1 Salmonella enterica strain PNUSAS393504 SAMN37883996-rid19909143.guided.17, whole genome shotgun sequence	11212..11649	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODJI010000013.1 Salmonella enterica strain PNUSAS393504 SAMN37883996-rid19909143.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABODJI010000016.1 Salmonella enterica strain PNUSAS393504 SAMN37883996-rid19909143.denovo.19, whole genome shotgun sequence	3408..3669																																																avrA	ABODJI010000002.1	553636..554505	99.54	870	0						
GCA_032870715.1_PDT001948145.1_genomic.fna	Salmonella_enterica	0.5221	328.845 KB	5	aroC_13,dnaN_11,hemD_25,hisD_197,purE_12,sucA_71,thrA_4	548	21:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_197	purE	100	100	purE_12	sucA	100	100	sucA_71	thrA	100	100	thrA_4	21	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Minnesota		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODJH010000003.1 Salmonella enterica strain PNUSAS393503 SAMN37883992-rid19909153.denovo.03, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODJH010000032.1 Salmonella enterica strain PNUSAS393503 SAMN37883992-rid19909153.guided.26, whole genome shotgun sequence	3571..4008	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODJH010000001.1	551877..552746	99.31	870	0						
GCA_032870735.1_PDT001948139.1_genomic.fna	Salmonella_enterica	0.5212	478.789 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODJJ010000001.1 Salmonella enterica strain PNUSAS393255 SAMN37883847-rid19909093.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODJJ010000024.1 Salmonella enterica strain PNUSAS393255 SAMN37883847-rid19909093.guided.19, whole genome shotgun sequence	402..839	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODJJ010000012.1 Salmonella enterica strain PNUSAS393255 SAMN37883847-rid19909093.denovo.12, whole genome shotgun sequence	40533..41175	enterobacteriales	IncFII(S)	100	262 / 262	ABODJJ010000016.1 Salmonella enterica strain PNUSAS393255 SAMN37883847-rid19909093.denovo.16, whole genome shotgun sequence	3404..3665																																																avrA	ABODJJ010000002.1	585424..586293	99.54	870	0						
GCA_032870755.1_PDT001948113.1_genomic.fna	Salmonella_enterica	0.5228	526.112 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCoo)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODJM010000002.1 Salmonella enterica strain PNUSAS393448 SAMN37883181-rid19908933.denovo.02, whole genome shotgun sequence	622355..622792	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODJM010000030.1 Salmonella enterica strain PNUSAS393448 SAMN37883181-rid19908933.guided.26, whole genome shotgun sequence	819..1256	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCoo)	98.09	262 / 262	ABODJM010000016.1 Salmonella enterica strain PNUSAS393448 SAMN37883181-rid19908933.denovo.16, whole genome shotgun sequence	37021..37282																																																						avrA	ABODJM010000004.1	149818..150687	99.655	870	0						
GCA_032870775.1_PDT001948118.1_genomic.fna	Salmonella_enterica	0.5207	466.896 KB	3	aroC_43,dnaN_47,hemD_49,hisD_16,purE_41,sucA_15,thrA_3	241	4:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Bredeney		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODJN010000001.1 Salmonella enterica strain PNUSAS393453 SAMN37883214-rid19908953.denovo.01, whole genome shotgun sequence	648006..648443	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODJN010000022.1 Salmonella enterica strain PNUSAS393453 SAMN37883214-rid19908953.guided.15, whole genome shotgun sequence	6537..6974	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODJN010000002.1	162745..163613	98.851	870	0						
GCA_032870795.1_PDT001948066.1_genomic.fna	Salmonella_enterica	0.5221	434.729 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODJK010000001.1 Salmonella enterica strain PNUSAS393393 SAMN37882782-rid19908713.denovo.01, whole genome shotgun sequence	1337457..1337894	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODJK010000029.1 Salmonella enterica strain PNUSAS393393 SAMN37882782-rid19908713.guided.20, whole genome shotgun sequence	24943..25380	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODJK010000010.1	94982..95850	99.195	870	0						
GCA_032870815.1_PDT001948001.1_genomic.fna	Salmonella_enterica	0.5218	379.926 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODJO010000001.1 Salmonella enterica strain PNUSAS393298 SAMN37882305-rid19908383.denovo.01, whole genome shotgun sequence	683914..684351	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODJO010000025.1 Salmonella enterica strain PNUSAS393298 SAMN37882305-rid19908383.guided.19, whole genome shotgun sequence	19566..20003	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABODJO010000015.1 Salmonella enterica strain PNUSAS393298 SAMN37882305-rid19908383.denovo.15, whole genome shotgun sequence	34930..35463																																																						avrA	ABODJO010000005.1	182719..183588	99.77	870	0						
GCA_032871055.1_PDT001948156.1_genomic.fna	Salmonella_enterica	0.5219	565.066 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODJW010000001.1 Salmonella enterica strain PNUSAS393502 SAMN37884002-rid19909263.denovo.01, whole genome shotgun sequence	486958..487395	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODJW010000024.1 Salmonella enterica strain PNUSAS393502 SAMN37884002-rid19909263.guided.20, whole genome shotgun sequence	3608..4045	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODJW010000002.1	544607..545475	99.425	870	0						
GCA_032871115.1_PDT001948079.1_genomic.fna	Salmonella_enterica	0.5215	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODKA010000001.1 Salmonella enterica strain PNUSAS393394 SAMN37883017-rid19907873.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODKA010000025.1 Salmonella enterica strain PNUSAS393394 SAMN37883017-rid19907873.guided.18, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODKA010000017.1 Salmonella enterica strain PNUSAS393394 SAMN37883017-rid19907873.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABODKA010000019.1 Salmonella enterica strain PNUSAS393394 SAMN37883017-rid19907873.denovo.22, whole genome shotgun sequence	3393..3654																																																avrA	ABODKA010000002.1	553635..554504	99.54	870	0						
GCA_032871135.1_PDT001948067.1_genomic.fna	Salmonella_enterica	0.5208	284.172 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODJZ010000001.1 Salmonella enterica strain PNUSAS393382 SAMN37882786-rid19907823.denovo.01, whole genome shotgun sequence	771821..772258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODJZ010000027.1 Salmonella enterica strain PNUSAS393382 SAMN37882786-rid19907823.guided.18, whole genome shotgun sequence	6632..7069	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODJZ010000021.1 Salmonella enterica strain PNUSAS393382 SAMN37882786-rid19907823.denovo.24, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABODJZ010000022.1 Salmonella enterica strain PNUSAS393382 SAMN37882786-rid19907823.denovo.25, whole genome shotgun sequence	3397..3658																																																avrA	ABODJZ010000002.1	175197..176066	99.54	870	0						
GCA_032871235.1_PDT001948195.1_genomic.fna	Salmonella_enterica	0.5215	149.038 KB	10	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_150,thrA_22	464	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_150	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODKH010000014.1 Salmonella enterica strain PNUSAS393524 SAMN37884548-rid19909643.denovo.14, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODKH010000071.1 Salmonella enterica strain PNUSAS393524 SAMN37884548-rid19909643.guided.45, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABODKH010000032.1 Salmonella enterica strain PNUSAS393524 SAMN37884548-rid19909643.denovo.32, whole genome shotgun sequence	11388..12030																																																																	
GCA_032871275.1_PDT001948235.1_genomic.fna	Salmonella_enterica	0.5211	222.566 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODKJ010000003.1 Salmonella enterica strain PNUSAS393550 SAMN37885301-rid19909993.denovo.03, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABODKJ010000023.1 Salmonella enterica strain PNUSAS393550 SAMN37885301-rid19909993.denovo.23, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABODKJ010000054.1 Salmonella enterica strain PNUSAS393550 SAMN37885301-rid19909993.guided.37, whole genome shotgun sequence	12730..13167	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABODKJ010000059.1 Salmonella enterica strain PNUSAS393550 SAMN37885301-rid19909993.guided.55, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABODKJ010000037.1 Salmonella enterica strain PNUSAS393550 SAMN37885301-rid19909993.denovo.40, whole genome shotgun sequence	1066..1932	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABODKJ010000058.1 Salmonella enterica strain PNUSAS393550 SAMN37885301-rid19909993.guided.54, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABODKJ010000037.1 Salmonella enterica strain PNUSAS393550 SAMN37885301-rid19909993.denovo.40, whole genome shotgun sequence	7566..8780	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABODKJ010000056.1 Salmonella enterica strain PNUSAS393550 SAMN37885301-rid19909993.guided.41, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABODKJ010000057.1 Salmonella enterica strain PNUSAS393550 SAMN37885301-rid19909993.guided.47, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABODKJ010000037.1 Salmonella enterica strain PNUSAS393550 SAMN37885301-rid19909993.denovo.40, whole genome shotgun sequence	5454..6629	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABODKJ010000056.1 Salmonella enterica strain PNUSAS393550 SAMN37885301-rid19909993.guided.41, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	IncFIB(S)	100	643 / 643	ABODKJ010000017.1 Salmonella enterica strain PNUSAS393550 SAMN37885301-rid19909993.denovo.17, whole genome shotgun sequence	44697..45339	enterobacteriales	IncFII(S)	100	262 / 262	ABODKJ010000017.1 Salmonella enterica strain PNUSAS393550 SAMN37885301-rid19909993.denovo.17, whole genome shotgun sequence	60424..60685																																																avrA	ABODKJ010000001.1	401484..402353	99.885	870	0						
GCA_032871295.1_PDT001948223.1_genomic.fna	Salmonella_enterica	0.5227	262.007 KB	6	aroC_43,dnaN_41,hemD_16,hisD_13,purE_12,sucA_13,thrA_4	195	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODKF010000005.1 Salmonella enterica strain PNUSAS393547 SAMN37884790-rid19909923.denovo.05, whole genome shotgun sequence	153895..154332	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODKF010000035.1 Salmonella enterica strain PNUSAS393547 SAMN37884790-rid19909923.guided.25, whole genome shotgun sequence	22048..22485	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032871335.1_PDT001948153.1_genomic.fna	Salmonella_enterica	0.5207	467.007 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODKK010000001.1 Salmonella enterica strain PNUSAS393509 SAMN37884001-rid19909233.denovo.01, whole genome shotgun sequence	555245..555682	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODKK010000028.1 Salmonella enterica strain PNUSAS393509 SAMN37884001-rid19909233.guided.20, whole genome shotgun sequence	341..778	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODKK010000002.1	503438..504307	99.195	870	0						
GCA_032871355.1_PDT001948141.1_genomic.fna	Salmonella_enterica	0.5213	405.443 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODKL010000001.1 Salmonella enterica strain PNUSAS393256 SAMN37883848-rid19909113.denovo.01, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODKL010000042.1 Salmonella enterica strain PNUSAS393256 SAMN37883848-rid19909113.guided.28, whole genome shotgun sequence	4721..5158	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODKL010000014.1	39473..40341	99.195	870	0						
GCA_032871375.1_PDT001948152.1_genomic.fna	Salmonella_enterica	0.5215	441.72 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODKM010000001.1 Salmonella enterica strain PNUSAS393514 SAMN37883997-rid19909223.denovo.01, whole genome shotgun sequence	403783..404220	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABODKM010000026.1 Salmonella enterica strain PNUSAS393514 SAMN37883997-rid19909223.guided.17, whole genome shotgun sequence	19725..20162	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	94.93	138 / 142	ABODKM010000012.1 Salmonella enterica strain PNUSAS393514 SAMN37883997-rid19909223.denovo.12, whole genome shotgun sequence	7954..8089																																																						avrA	ABODKM010000002.1	553627..554496	99.655	870	0						
GCA_032871395.1_PDT001948224.1_genomic.fna	Salmonella_enterica	0.5206	339.478 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODKQ010000001.1 Salmonella enterica strain PNUSAS393546 SAMN37884789-rid19909933.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODKQ010000031.1 Salmonella enterica strain PNUSAS393546 SAMN37884789-rid19909933.guided.18, whole genome shotgun sequence	44155..44592	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODKQ010000021.1 Salmonella enterica strain PNUSAS393546 SAMN37884789-rid19909933.denovo.24, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABODKQ010000022.1 Salmonella enterica strain PNUSAS393546 SAMN37884789-rid19909933.denovo.25, whole genome shotgun sequence	3392..3653		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABODKQ010000015.1 Salmonella enterica strain PNUSAS393546 SAMN37884789-rid19909933.denovo.15, whole genome shotgun sequence	35289..35430																																									avrA	ABODKQ010000002.1	552782..553651	99.54	870	0						
GCA_032871495.1_PDT001948126.1_genomic.fna	Salmonella_enterica	0.5218	380.499 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODKT010000001.1 Salmonella enterica strain PNUSAS393425 SAMN37883113-rid19908143.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODKT010000031.1 Salmonella enterica strain PNUSAS393425 SAMN37883113-rid19908143.guided.20, whole genome shotgun sequence	6372..6809	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODKT010000005.1	123426..124295	99.31	870	0						
GCA_032871515.1_PDT001948221.1_genomic.fna	Salmonella_enterica	0.521	283.999 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODKS010000001.1 Salmonella enterica strain PNUSAS393541 SAMN37884714-rid19909903.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODKS010000029.1 Salmonella enterica strain PNUSAS393541 SAMN37884714-rid19909903.guided.18, whole genome shotgun sequence	32271..32708	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODKS010000022.1 Salmonella enterica strain PNUSAS393541 SAMN37884714-rid19909903.denovo.25, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABODKS010000024.1 Salmonella enterica strain PNUSAS393541 SAMN37884714-rid19909903.denovo.27, whole genome shotgun sequence	3395..3656																																																avrA	ABODKS010000002.1	506258..507127	99.54	870	0						
GCA_032871635.1_PDT001948579.1_genomic.fna	Salmonella_enterica	0.5215	150.914 KB	10	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	Col(pHAD28),Col440I,ColRNAI,IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODKZ010000002.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS32310411 SAMN37887767-rid19913413.denovo.02, whole genome shotgun sequence	168206..168643	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODKZ010000080.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS32310411 SAMN37887767-rid19913413.guided.21, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABODKZ010000056.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS32310411 SAMN37887767-rid19913413.denovo.60, whole genome shotgun sequence	371..501	enterobacteriales	Col440I	91.74	109 / 114	ABODKZ010000060.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS32310411 SAMN37887767-rid19913413.denovo.64, whole genome shotgun sequence	2246..2354		enterobacteriales	ColRNAI	90.08	131 / 130	ABODKZ010000057.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS32310411 SAMN37887767-rid19913413.denovo.61, whole genome shotgun sequence	3981..4111		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABODKZ010000046.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS32310411 SAMN37887767-rid19913413.denovo.50, whole genome shotgun sequence	8093..8234																																													
GCA_032871655.1_PDT001948572.1_genomic.fna	Salmonella_enterica	0.5216	174.9 KB	11	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_58,thrA_4	412	4:e,h:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaTEM-1C,blaTEM-1C,blaTEM-1B,tet(A),tet(A)	1	parC_p.T57S	4	Col(pHAD28),Col440II,ColpVC,ColpVC,IncN	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_58	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABODLC010000008.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.denovo.08, whole genome shotgun sequence	60372..60809	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODLC010000038.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.denovo.40, whole genome shotgun sequence	9300..10136	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	ABODLC010000038.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.denovo.40, whole genome shotgun sequence	10136..10938	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	ABODLC010000038.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.denovo.40, whole genome shotgun sequence	10136..10939	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	ABODLC010000038.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.denovo.40, whole genome shotgun sequence	10136..10939	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	ABODLC010000038.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.denovo.40, whole genome shotgun sequence	10136..10939	Streptomycin	AF321550	aac(6')-Iaa	97.26	438/438	ABODLC010000063.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.guided.36, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODLC010000065.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.guided.43, whole genome shotgun sequence	6510..7346	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	ABODLC010000065.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.guided.43, whole genome shotgun sequence	5708..6510	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	ABODLC010000065.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.guided.43, whole genome shotgun sequence	5707..6510	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	ABODLC010000065.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.guided.43, whole genome shotgun sequence	5707..6510	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	ABODLC010000065.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.guided.43, whole genome shotgun sequence	5707..6510	Streptomycin	AF321550	blaTEM-1C	100	861/861	ABODLC010000041.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.denovo.45, whole genome shotgun sequence	5036..5896	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1C	100	861/861	ABODLC010000066.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.guided.56, whole genome shotgun sequence	24..884	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1B	100	861/861	ABODLC010000067.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.guided.57, whole genome shotgun sequence	24..884	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	ABODLC010000038.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.denovo.40, whole genome shotgun sequence	14626..15825	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABODLC010000065.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.guided.43, whole genome shotgun sequence	821..2020	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABODLC010000041.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.denovo.45, whole genome shotgun sequence	1939..2067	enterobacteriales	Col440II	98.23	282 / 282	ABODLC010000041.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.denovo.45, whole genome shotgun sequence	2645..2926		enterobacteriales	ColpVC	96.89	193 / 193	ABODLC010000048.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.denovo.52, whole genome shotgun sequence	1524..1716		enterobacteriales	ColpVC	98.96	193 / 193	ABODLC010000049.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.denovo.53, whole genome shotgun sequence	805..997		enterobacteriales	IncN	100	514 / 514	ABODLC010000043.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS32310405 SAMN37887763-rid19913343.denovo.47, whole genome shotgun sequence	459..972																											avrA	ABODLC010000002.1	151242..152111	99.54	870	0						
GCA_032871675.1_PDT001948574.1_genomic.fna	Salmonella_enterica	0.5235	122.895 KB	12	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODLA010000047.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS32310410 SAMN37887766-rid19913363.denovo.47, whole genome shotgun sequence	14114..14551	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODLA010000083.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS32310410 SAMN37887766-rid19913363.guided.55, whole genome shotgun sequence	14145..14582	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032871695.1_PDT001948573.1_genomic.fna	Salmonella_enterica	0.5221	100.434 KB	16	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODLB010000015.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS32310406 SAMN37887764-rid19913353.denovo.015, whole genome shotgun sequence	52370..52807	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODLB010000113.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS32310406 SAMN37887764-rid19913353.guided.042, whole genome shotgun sequence	20757..21194	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODLB010000014.1	102618..103487	99.77	870	0						
GCA_032871715.1_PDT001948571.1_genomic.fna	Salmonella_enterica	0.5221	111.494 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODLG010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.denovo.001, whole genome shotgun sequence	460207..460644	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABODLG010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.denovo.048, whole genome shotgun sequence	22846..23637	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABODLG010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.denovo.048, whole genome shotgun sequence	22846..23637	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABODLG010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.denovo.073, whole genome shotgun sequence	1052..2077	Hygromycin	V01499	aac(3)-IV	100	777/777	ABODLG010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.denovo.073, whole genome shotgun sequence	47..823	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABODLG010000105.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.guided.041, whole genome shotgun sequence	33550..33987	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABODLG010000106.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.guided.047, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABODLG010000106.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.guided.047, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABODLG010000111.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.guided.082, whole genome shotgun sequence	247..1272	Hygromycin	V01499	aac(3)-IV	100	777/777	ABODLG010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.guided.099, whole genome shotgun sequence	88..864	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABODLG010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.denovo.074, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABODLG010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.guided.076, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABODLG010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.denovo.090, whole genome shotgun sequence	320..736	Fosfomycin	AB522970	fosA3	100	417/417	ABODLG010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.guided.089, whole genome shotgun sequence	361..777	Fosfomycin	AB522970	floR	98.19	1214/1215	ABODLG010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.denovo.070, whole genome shotgun sequence	2984..4197	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABODLG010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.guided.068, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABODLG010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.denovo.048, whole genome shotgun sequence	21502..22341	Sulfamethoxazole	U12338	sul1	100	840/840	ABODLG010000106.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.guided.047, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABODLG010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.denovo.048, whole genome shotgun sequence	7786..8985	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABODLG010000106.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.guided.047, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABODLG010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310409 SAMN37887765-rid19913333.denovo.032, whole genome shotgun sequence	37011..37570																																																						avrA	ABODLG010000003.1	124388..125257	99.655	870	0						
GCA_032871735.1_PDT001948570.1_genomic.fna	Salmonella_enterica	0.5215	143.016 KB	10	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	4	aac(6')-Iaa,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),IncQ1,IncQ1	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODLK010000012.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310404 SAMN37887762-rid19913323.denovo.12, whole genome shotgun sequence	100577..101014	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	671/804	ABODLK010000054.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310404 SAMN37887762-rid19913323.denovo.58, whole genome shotgun sequence	8803..9473	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABODLK010000071.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310404 SAMN37887762-rid19913323.guided.52, whole genome shotgun sequence	9617..10054	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	695/804	ABODLK010000073.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310404 SAMN37887762-rid19913323.guided.57, whole genome shotgun sequence	7879..8573	Streptomycin	AF321551	sul2	100	816/816	ABODLK010000054.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310404 SAMN37887762-rid19913323.denovo.58, whole genome shotgun sequence	85..900	Sulfamethoxazole	FN995456	sul2	100	816/816	ABODLK010000073.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310404 SAMN37887762-rid19913323.guided.57, whole genome shotgun sequence	7003..7818	Sulfamethoxazole	FN995456	tet(A)	100	1200/1200	ABODLK010000054.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310404 SAMN37887762-rid19913323.denovo.58, whole genome shotgun sequence	6703..7902	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABODLK010000073.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310404 SAMN37887762-rid19913323.guided.57, whole genome shotgun sequence	1..1200	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABODLK010000059.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310404 SAMN37887762-rid19913323.denovo.63, whole genome shotgun sequence	1708..1838	enterobacteriales	IncQ1	100	796 / 796	ABODLK010000054.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310404 SAMN37887762-rid19913323.denovo.58, whole genome shotgun sequence	2240..3035		enterobacteriales	IncQ1	100	796 / 796	ABODLK010000073.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310404 SAMN37887762-rid19913323.guided.57, whole genome shotgun sequence	4868..5663																																									avrA	ABODLK010000008.1	99173..100042	98.966	870	0						
GCA_032872075.1_PDT001948554.1_genomic.fna	Salmonella_enterica	0.5209	404.449 KB	5	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODLV010000003.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310416 SAMN37887715-rid19913163.denovo.03, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODLV010000041.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310416 SAMN37887715-rid19913163.guided.20, whole genome shotgun sequence	44304..44741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABODLV010000025.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310416 SAMN37887715-rid19913163.denovo.28, whole genome shotgun sequence	3836..3977																																																						avrA	ABODLV010000009.1	37009..37878	99.425	870	0						
GCA_032872095.1_PDT001948553.1_genomic.fna	Salmonella_enterica	0.5212	477.515 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODLY010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310415 SAMN37887716-rid19913153.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODLY010000027.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310415 SAMN37887716-rid19913153.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODLY010000016.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310415 SAMN37887716-rid19913153.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABODLY010000018.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310415 SAMN37887716-rid19913153.denovo.21, whole genome shotgun sequence	3420..3681																																																avrA	ABODLY010000002.1	553312..554181	99.54	870	0						
GCA_032872115.1_PDT001948552.1_genomic.fna	Salmonella_enterica	0.5213	367.399 KB	5	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODLZ010000001.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS32310414 SAMN37887717-rid19913143.denovo.01, whole genome shotgun sequence	624509..624946	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODLZ010000038.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS32310414 SAMN37887717-rid19913143.guided.27, whole genome shotgun sequence	4065..4502	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABODLZ010000029.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS32310414 SAMN37887717-rid19913143.denovo.32, whole genome shotgun sequence	358..488																																																																	
GCA_032872175.1_PDT001948549.1_genomic.fna	Salmonella_enterica	0.5207	245.537 KB	7	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODMA010000002.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310417 SAMN37887714-rid19913113.denovo.02, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODMA010000044.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310417 SAMN37887714-rid19913113.guided.16, whole genome shotgun sequence	44304..44741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABODMA010000016.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310417 SAMN37887714-rid19913113.denovo.17, whole genome shotgun sequence	257..398																																																						avrA	ABODMA010000011.1	36962..37831	99.425	870	0						
GCA_032872215.1_PDT001948547.1_genomic.fna	Salmonella_enterica	0.5225	204.472 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODMB010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310412 SAMN37887706-rid19913093.denovo.01, whole genome shotgun sequence	502316..502753	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODMB010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310412 SAMN37887706-rid19913093.guided.26, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODMB010000010.1	66915..67784	99.77	870	0						
GCA_032872235.1_PDT001948546.1_genomic.fna	Salmonella_enterica	0.5216	225.555 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODMD010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310413 SAMN37887707-rid19913083.denovo.01, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODMD010000069.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310413 SAMN37887707-rid19913083.guided.17, whole genome shotgun sequence	20567..21004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABODMD010000036.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310413 SAMN37887707-rid19913083.denovo.39, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABODMD010000024.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310413 SAMN37887707-rid19913083.denovo.25, whole genome shotgun sequence	13062..13323																																																avrA	ABODMD010000003.1	174651..175519	100	869	0						
GCA_032872275.1_PDT001948534.1_genomic.fna	Salmonella_enterica	0.5209	332.149 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODMF010000003.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.denovo.03, whole genome shotgun sequence	159453..159890	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODMF010000022.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.denovo.22, whole genome shotgun sequence	7032..7868	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODMF010000022.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.denovo.22, whole genome shotgun sequence	7868..8671	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABODMF010000032.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.denovo.39, whole genome shotgun sequence	135..950	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	aph(6)-Id	100	837/837	ABODMF010000042.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.guided.31, whole genome shotgun sequence	1979..2815	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODMF010000042.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.guided.31, whole genome shotgun sequence	1176..1979	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABODMF010000044.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.guided.36, whole genome shotgun sequence	1350..1787	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABODMF010000045.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.guided.38, whole genome shotgun sequence	129..944	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	V00359	blaCMY-2	100	1146/1146	ABODMF010000026.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.denovo.28, whole genome shotgun sequence	10910..12055	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABODMF010000040.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.guided.27, whole genome shotgun sequence	10931..12076	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABODMF010000022.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.denovo.22, whole genome shotgun sequence	2683..3896	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABODMF010000043.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.guided.34, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABODMF010000022.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.denovo.22, whole genome shotgun sequence	8732..9547	Sulfamethoxazole	AY034138	sul2	100	816/816	ABODMF010000042.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.guided.31, whole genome shotgun sequence	300..1115	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABODMF010000022.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.denovo.22, whole genome shotgun sequence	4497..5771	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABODMF010000042.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.guided.31, whole genome shotgun sequence	4076..5350	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABODMF010000024.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.denovo.25, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABODMF010000018.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.denovo.18, whole genome shotgun sequence	29465..29724		enterobacteriales	IncX1	98.66	374 / 374	ABODMF010000027.1 Salmonella enterica strain PNUSAS393680 SAMN37887164-rid19912983.denovo.30, whole genome shotgun sequence	8874..9247																																									avrA	ABODMF010000011.1	39484..40352	99.54	870	0						
GCA_032872315.1_PDT001948533.1_genomic.fna	Salmonella_enterica	0.5199	391.749 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODMG010000001.1 Salmonella enterica strain PNUSAS393696 SAMN37887170-rid19912973.denovo.01, whole genome shotgun sequence	563827..564264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODMG010000027.1 Salmonella enterica strain PNUSAS393696 SAMN37887170-rid19912973.guided.16, whole genome shotgun sequence	11602..12039	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODMG010000011.1	140203..141071	99.195	870	0						
GCA_032872335.1_PDT001948532.1_genomic.fna	Salmonella_enterica	0.5224	735.413 KB	2	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODMH010000001.1 Salmonella enterica strain PNUSAS393698 SAMN37887171-rid19911613.denovo.01, whole genome shotgun sequence	1374582..1375019	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODMH010000017.1 Salmonella enterica strain PNUSAS393698 SAMN37887171-rid19911613.denovo.19, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABODMH010000017.1 Salmonella enterica strain PNUSAS393698 SAMN37887171-rid19911613.denovo.19, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABODMH010000017.1 Salmonella enterica strain PNUSAS393698 SAMN37887171-rid19911613.denovo.19, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABODMH010000017.1 Salmonella enterica strain PNUSAS393698 SAMN37887171-rid19911613.denovo.19, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABODMH010000017.1 Salmonella enterica strain PNUSAS393698 SAMN37887171-rid19911613.denovo.19, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABODMH010000031.1 Salmonella enterica strain PNUSAS393698 SAMN37887171-rid19911613.guided.20, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABODMH010000031.1 Salmonella enterica strain PNUSAS393698 SAMN37887171-rid19911613.guided.20, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABODMH010000031.1 Salmonella enterica strain PNUSAS393698 SAMN37887171-rid19911613.guided.20, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABODMH010000031.1 Salmonella enterica strain PNUSAS393698 SAMN37887171-rid19911613.guided.20, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABODMH010000031.1 Salmonella enterica strain PNUSAS393698 SAMN37887171-rid19911613.guided.20, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABODMH010000033.1 Salmonella enterica strain PNUSAS393698 SAMN37887171-rid19911613.guided.24, whole genome shotgun sequence	2855..3292	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABODMH010000018.1 Salmonella enterica strain PNUSAS393698 SAMN37887171-rid19911613.denovo.22, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABODMH010000032.1 Salmonella enterica strain PNUSAS393698 SAMN37887171-rid19911613.guided.21, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABODMH010000022.1 Salmonella enterica strain PNUSAS393698 SAMN37887171-rid19911613.denovo.27, whole genome shotgun sequence	805..997																																																						avrA	ABODMH010000006.1	140333..141202	99.655	870	0						
GCA_032872355.1_PDT001948530.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODMJ010000001.1 Salmonella enterica strain PNUSAS393702 SAMN37887174-rid19911603.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODMJ010000024.1 Salmonella enterica strain PNUSAS393702 SAMN37887174-rid19911603.guided.17, whole genome shotgun sequence	9645..10082	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODMJ010000012.1 Salmonella enterica strain PNUSAS393702 SAMN37887174-rid19911603.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABODMJ010000016.1 Salmonella enterica strain PNUSAS393702 SAMN37887174-rid19911603.denovo.19, whole genome shotgun sequence	3397..3658																																																avrA	ABODMJ010000002.1	553636..554505	99.54	870	0						
GCA_032872375.1_PDT001948531.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODMI010000001.1 Salmonella enterica strain PNUSAS393714 SAMN37887179-rid19912963.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODMI010000027.1 Salmonella enterica strain PNUSAS393714 SAMN37887179-rid19912963.guided.15, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODMI010000018.1 Salmonella enterica strain PNUSAS393714 SAMN37887179-rid19912963.denovo.20, whole genome shotgun sequence	6813..7455	enterobacteriales	IncFII(S)	100	262 / 262	ABODMI010000020.1 Salmonella enterica strain PNUSAS393714 SAMN37887179-rid19912963.denovo.23, whole genome shotgun sequence	3388..3649																																																avrA	ABODMI010000002.1	553077..553946	99.54	870	0						
GCA_032872395.1_PDT001948529.1_genomic.fna	Salmonella_enterica	0.5206	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODMK010000001.1 Salmonella enterica strain PNUSAS393695 SAMN37887169-rid19912953.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODMK010000037.1 Salmonella enterica strain PNUSAS393695 SAMN37887169-rid19912953.guided.11, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABODMK010000013.1 Salmonella enterica strain PNUSAS393695 SAMN37887169-rid19912953.denovo.14, whole genome shotgun sequence	68035..68176																																																						avrA	ABODMK010000002.1	94085..94954	99.655	870	0						
GCA_032872415.1_PDT001948528.1_genomic.fna	Salmonella_enterica	0.5213	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODML010000001.1 Salmonella enterica strain PNUSAS393701 SAMN37887175-rid19912943.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODML010000024.1 Salmonella enterica strain PNUSAS393701 SAMN37887175-rid19912943.guided.17, whole genome shotgun sequence	9268..9705	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODML010000013.1 Salmonella enterica strain PNUSAS393701 SAMN37887175-rid19912943.denovo.13, whole genome shotgun sequence	40512..41154	enterobacteriales	IncFII(S)	100	262 / 262	ABODML010000016.1 Salmonella enterica strain PNUSAS393701 SAMN37887175-rid19912943.denovo.19, whole genome shotgun sequence	3446..3707																																																avrA	ABODML010000002.1	553636..554505	99.54	870	0						
GCA_032872515.1_PDT001948525.1_genomic.fna	Salmonella_enterica	0.5209	523.524 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABODMR010000007.1 Salmonella enterica strain PNUSAS393713 SAMN37887178-rid19911593.denovo.07, whole genome shotgun sequence	27650..28087	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABODMR010000050.1 Salmonella enterica strain PNUSAS393713 SAMN37887178-rid19911593.guided.20, whole genome shotgun sequence	16067..16504	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.39	446 / 445	ABODMR010000018.1 Salmonella enterica strain PNUSAS393713 SAMN37887178-rid19911593.denovo.18, whole genome shotgun sequence	8692..9136	enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABODMR010000018.1 Salmonella enterica strain PNUSAS393713 SAMN37887178-rid19911593.denovo.18, whole genome shotgun sequence	9397..9609																																																											
GCA_032872535.1_PDT001948526.1_genomic.fna	Salmonella_enterica	0.5222	400.817 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODMQ010000001.1 Salmonella enterica strain PNUSAS393700 SAMN37887176-rid19912923.denovo.01, whole genome shotgun sequence	724904..725341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODMQ010000024.1 Salmonella enterica strain PNUSAS393700 SAMN37887176-rid19912923.guided.19, whole genome shotgun sequence	1804..2241	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODMQ010000002.1	148520..149389	99.77	870	0						
GCA_032872575.1_PDT001948527.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODMP010000001.1 Salmonella enterica strain PNUSAS393699 SAMN37887173-rid19912933.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODMP010000024.1 Salmonella enterica strain PNUSAS393699 SAMN37887173-rid19912933.guided.16, whole genome shotgun sequence	9757..10194	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODMP010000012.1 Salmonella enterica strain PNUSAS393699 SAMN37887173-rid19912933.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABODMP010000012.1 Salmonella enterica strain PNUSAS393699 SAMN37887173-rid19912933.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABODMP010000002.1	553636..554505	99.54	870	0						
GCA_032872595.1_PDT001948524.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODMS010000001.1 Salmonella enterica strain PNUSAS393703 SAMN37887177-rid19912913.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODMS010000023.1 Salmonella enterica strain PNUSAS393703 SAMN37887177-rid19912913.guided.15, whole genome shotgun sequence	30962..31399	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODMS010000013.1 Salmonella enterica strain PNUSAS393703 SAMN37887177-rid19912913.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABODMS010000016.1 Salmonella enterica strain PNUSAS393703 SAMN37887177-rid19912913.denovo.19, whole genome shotgun sequence	3390..3651																																																avrA	ABODMS010000002.1	553635..554504	99.54	870	0						
GCA_032872615.1_PDT001948523.1_genomic.fna	Salmonella_enterica	0.522	728.55 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODMT010000001.1 Salmonella enterica strain PNUSAS393683 SAMN37887162-rid19912903.denovo.01, whole genome shotgun sequence	687395..687832	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABODMT010000026.1 Salmonella enterica strain PNUSAS393683 SAMN37887162-rid19912903.guided.12, whole genome shotgun sequence	4384..4821	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABODMT010000010.1 Salmonella enterica strain PNUSAS393683 SAMN37887162-rid19912903.denovo.11, whole genome shotgun sequence	38841..39746	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABODMT010000030.1 Salmonella enterica strain PNUSAS393683 SAMN37887162-rid19912903.guided.24, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABODMT010000010.1 Salmonella enterica strain PNUSAS393683 SAMN37887162-rid19912903.denovo.11, whole genome shotgun sequence	26927..28140	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABODMT010000029.1 Salmonella enterica strain PNUSAS393683 SAMN37887162-rid19912903.guided.22, whole genome shotgun sequence	1052..2265	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABODMT010000010.1 Salmonella enterica strain PNUSAS393683 SAMN37887162-rid19912903.denovo.11, whole genome shotgun sequence	32691..33530	Sulfamethoxazole	U12338	sul1	100	840/840	ABODMT010000031.1 Salmonella enterica strain PNUSAS393683 SAMN37887162-rid19912903.guided.25, whole genome shotgun sequence	315..1154	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABODMT010000010.1 Salmonella enterica strain PNUSAS393683 SAMN37887162-rid19912903.denovo.11, whole genome shotgun sequence	28741..30015	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABODMT010000028.1 Salmonella enterica strain PNUSAS393683 SAMN37887162-rid19912903.guided.21, whole genome shotgun sequence	2361..3635	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABODMT010000010.1 Salmonella enterica strain PNUSAS393683 SAMN37887162-rid19912903.denovo.11, whole genome shotgun sequence	31173..31646	Trimethoprim	X00926	dfrA1	100	474/474	ABODMT010000028.1 Salmonella enterica strain PNUSAS393683 SAMN37887162-rid19912903.guided.21, whole genome shotgun sequence	730..1203	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABODMT010000010.1 Salmonella enterica strain PNUSAS393683 SAMN37887162-rid19912903.denovo.11, whole genome shotgun sequence	4434..4684																																																						avrA	ABODMT010000003.1	553473..554342	99.77	870	0						
GCA_032872635.1_PDT001948521.1_genomic.fna	Salmonella_enterica	0.5212	529.532 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABODMV010000001.1 Salmonella enterica strain PNUSAS393684 SAMN37887167-rid19912893.denovo.01, whole genome shotgun sequence	631322..631759	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABODMV010000026.1 Salmonella enterica strain PNUSAS393684 SAMN37887167-rid19912893.guided.19, whole genome shotgun sequence	9349..9786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABODMV010000017.1 Salmonella enterica strain PNUSAS393684 SAMN37887167-rid19912893.denovo.20, whole genome shotgun sequence	239..369																																																						avrA	ABODMV010000002.1	561027..561896	99.425	870	0						
GCA_032872665.1_PDT001948522.1_genomic.fna	Salmonella_enterica	0.5205	425.986 KB	3	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODMU010000001.1 Salmonella enterica strain PNUSAS393697 SAMN37887172-rid19911583.denovo.01, whole genome shotgun sequence	648313..648750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODMU010000021.1 Salmonella enterica strain PNUSAS393697 SAMN37887172-rid19911583.guided.12, whole genome shotgun sequence	19148..19585	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODMU010000003.1	150036..150905	99.425	870	0						
GCA_032872705.1_PDT001948518.1_genomic.fna	Salmonella_enterica	0.521	150.868 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODMY010000001.1 Salmonella enterica strain PNUSAS393682 SAMN37887166-rid19912873.denovo.01, whole genome shotgun sequence	19564..20001	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODMY010000084.1 Salmonella enterica strain PNUSAS393682 SAMN37887166-rid19912873.guided.38, whole genome shotgun sequence	32117..32554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(SARC14)	94.62	446 / 445	ABODMY010000029.1 Salmonella enterica strain PNUSAS393682 SAMN37887166-rid19912873.denovo.30, whole genome shotgun sequence	37780..38224	enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABODMY010000029.1 Salmonella enterica strain PNUSAS393682 SAMN37887166-rid19912873.denovo.30, whole genome shotgun sequence	37307..37519																																																avrA	ABODMY010000017.1	98039..98907	99.655	870	0						
GCA_032872725.1_PDT001948520.1_genomic.fna	Salmonella_enterica	0.5217	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODMW010000001.1 Salmonella enterica strain PNUSAS393681 SAMN37887168-rid19911573.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODMW010000028.1 Salmonella enterica strain PNUSAS393681 SAMN37887168-rid19911573.guided.16, whole genome shotgun sequence	2817..3254	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABODMW010000017.1 Salmonella enterica strain PNUSAS393681 SAMN37887168-rid19911573.denovo.20, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABODMW010000029.1 Salmonella enterica strain PNUSAS393681 SAMN37887168-rid19911573.guided.22, whole genome shotgun sequence	739..1383	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABODMW010000017.1 Salmonella enterica strain PNUSAS393681 SAMN37887168-rid19911573.denovo.20, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABODMW010000018.1 Salmonella enterica strain PNUSAS393681 SAMN37887168-rid19911573.denovo.21, whole genome shotgun sequence	967..1095		enterobacteriales	Col(pHAD28)	100	131 / 131	ABODMW010000029.1 Salmonella enterica strain PNUSAS393681 SAMN37887168-rid19911573.guided.22, whole genome shotgun sequence	83..213																																									avrA	ABODMW010000002.1	129887..130756	98.966	870	0						
GCA_032872745.1_PDT001948519.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODMX010000001.1 Salmonella enterica strain PNUSAS393705 SAMN37887163-rid19912883.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODMX010000024.1 Salmonella enterica strain PNUSAS393705 SAMN37887163-rid19912883.guided.17, whole genome shotgun sequence	2239..2676	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODMX010000012.1 Salmonella enterica strain PNUSAS393705 SAMN37887163-rid19912883.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABODMX010000012.1 Salmonella enterica strain PNUSAS393705 SAMN37887163-rid19912883.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABODMX010000002.1	553636..554505	99.54	870	0						
GCA_032872765.1_PDT001948517.1_genomic.fna	Salmonella_enterica	0.5212	478.361 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODMZ010000001.1 Salmonella enterica strain PNUSAS393685 SAMN37887165-rid19912863.denovo.01, whole genome shotgun sequence	774495..774932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODMZ010000021.1 Salmonella enterica strain PNUSAS393685 SAMN37887165-rid19912863.guided.15, whole genome shotgun sequence	12750..13187	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODMZ010000002.1	553563..554432	99.54	870	0						
GCA_032872785.1_PDT001948516.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODNA010000001.1 Salmonella enterica strain PNUSAS393687 SAMN37887147-rid19912853.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODNA010000021.1 Salmonella enterica strain PNUSAS393687 SAMN37887147-rid19912853.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODNA010000011.1 Salmonella enterica strain PNUSAS393687 SAMN37887147-rid19912853.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABODNA010000015.1 Salmonella enterica strain PNUSAS393687 SAMN37887147-rid19912853.denovo.18, whole genome shotgun sequence	3368..3629																																																avrA	ABODNA010000002.1	553636..554505	99.54	870	0						
GCA_032872805.1_PDT001948515.1_genomic.fna	Salmonella_enterica	0.52	451.954 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODNB010000001.1 Salmonella enterica strain PNUSAS393707 SAMN37887146-rid19911563.denovo.01, whole genome shotgun sequence	642724..643161	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODNB010000022.1 Salmonella enterica strain PNUSAS393707 SAMN37887146-rid19911563.guided.17, whole genome shotgun sequence	2703..3140	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032872825.1_PDT001948514.1_genomic.fna	Salmonella_enterica	0.5212	489.886 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODNC010000001.1 Salmonella enterica strain PNUSAS393677 SAMN37887145-rid19912843.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODNC010000021.1 Salmonella enterica strain PNUSAS393677 SAMN37887145-rid19912843.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.76	643 / 643	ABODNC010000012.1 Salmonella enterica strain PNUSAS393677 SAMN37887145-rid19912843.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABODNC010000015.1 Salmonella enterica strain PNUSAS393677 SAMN37887145-rid19912843.denovo.18, whole genome shotgun sequence	3418..3679																																																avrA	ABODNC010000002.1	553499..554368	99.54	870	0						
GCA_032872835.1_PDT001948513.1_genomic.fna	Salmonella_enterica	0.5215	410.978 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODND010000001.1 Salmonella enterica strain PNUSAS393686 SAMN37887153-rid19912833.denovo.01, whole genome shotgun sequence	177106..177543	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODND010000027.1 Salmonella enterica strain PNUSAS393686 SAMN37887153-rid19912833.guided.20, whole genome shotgun sequence	13780..14217	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODND010000004.1	130566..131435	99.77	870	0						
GCA_032872865.1_PDT001948512.1_genomic.fna	Salmonella_enterica	0.5213	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODNE010000001.1 Salmonella enterica strain PNUSAS393689 SAMN37887159-rid19911553.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODNE010000022.1 Salmonella enterica strain PNUSAS393689 SAMN37887159-rid19911553.guided.16, whole genome shotgun sequence	4099..4536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODNE010000011.1 Salmonella enterica strain PNUSAS393689 SAMN37887159-rid19911553.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABODNE010000014.1 Salmonella enterica strain PNUSAS393689 SAMN37887159-rid19911553.denovo.17, whole genome shotgun sequence	3402..3663																																																avrA	ABODNE010000002.1	553637..554506	99.54	870	0						
GCA_032872885.1_PDT001948511.1_genomic.fna	Salmonella_enterica	0.5211	410.978 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODNF010000001.1 Salmonella enterica strain PNUSAS393678 SAMN37887150-rid19912823.denovo.01, whole genome shotgun sequence	835211..835648	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODNF010000024.1 Salmonella enterica strain PNUSAS393678 SAMN37887150-rid19912823.guided.21, whole genome shotgun sequence	2818..3255	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODNF010000002.1	148520..149389	99.77	870	0						
GCA_032872905.1_PDT001948510.1_genomic.fna	Salmonella_enterica	0.5202	673.129 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODNG010000001.1 Salmonella enterica strain PNUSAS393694 SAMN37887151-rid19911543.denovo.01, whole genome shotgun sequence	643310..643747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODNG010000023.1 Salmonella enterica strain PNUSAS393694 SAMN37887151-rid19911543.guided.17, whole genome shotgun sequence	6721..7158	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032872925.1_PDT001948509.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODNH010000001.1 Salmonella enterica strain PNUSAS393706 SAMN37887154-rid19912813.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODNH010000021.1 Salmonella enterica strain PNUSAS393706 SAMN37887154-rid19912813.guided.13, whole genome shotgun sequence	13176..13613	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODNH010000011.1 Salmonella enterica strain PNUSAS393706 SAMN37887154-rid19912813.denovo.11, whole genome shotgun sequence	40528..41170	enterobacteriales	IncFII(S)	100	262 / 262	ABODNH010000015.1 Salmonella enterica strain PNUSAS393706 SAMN37887154-rid19912813.denovo.17, whole genome shotgun sequence	3385..3646																																																avrA	ABODNH010000002.1	553636..554505	99.54	870	0						
GCA_032872945.1_PDT001948508.1_genomic.fna	Salmonella_enterica	0.5221	370.708 KB	6	aroC_81,dnaN_283,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	909	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_283	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODNI010000001.1 Salmonella enterica strain PNUSAS393674 SAMN37887144-rid19911533.denovo.01, whole genome shotgun sequence	395793..396230	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODNI010000036.1 Salmonella enterica strain PNUSAS393674 SAMN37887144-rid19911533.guided.19, whole genome shotgun sequence	4009..4446	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODNI010000009.1	94893..95762	99.31	870	0						
GCA_032872965.1_PDT001948507.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODNJ010000001.1 Salmonella enterica strain PNUSAS393704 SAMN37887158-rid19912803.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODNJ010000023.1 Salmonella enterica strain PNUSAS393704 SAMN37887158-rid19912803.guided.15, whole genome shotgun sequence	12943..13380	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODNJ010000012.1 Salmonella enterica strain PNUSAS393704 SAMN37887158-rid19912803.denovo.12, whole genome shotgun sequence	40541..41183	enterobacteriales	IncFII(S)	100	262 / 262	ABODNJ010000015.1 Salmonella enterica strain PNUSAS393704 SAMN37887158-rid19912803.denovo.17, whole genome shotgun sequence	3402..3663																																																avrA	ABODNJ010000002.1	553636..554505	99.54	870	0						
GCA_032872985.1_PDT001948504.1_genomic.fna	Salmonella_enterica	0.5225	761.796 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODNL010000001.1 Salmonella enterica strain PNUSAS393691 SAMN37887156-rid19912783.denovo.01, whole genome shotgun sequence	473685..474122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABODNL010000021.1 Salmonella enterica strain PNUSAS393691 SAMN37887156-rid19912783.guided.14, whole genome shotgun sequence	30026..30463	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODNL010000005.1	151277..152146	99.77	870	0						
GCA_032873005.1_PDT001948505.1_genomic.fna	Salmonella_enterica	0.5229	332.888 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA7,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA7,blaCMY-2,blaCMY-2,floR,floR,sul1,sul2,sul2,sul1,tet(A),tet(A)	2	gyrA_p.D87N,parC_p.T57S	1	IncC	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODNK010000001.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODNK010000015.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.denovo.15, whole genome shotgun sequence	87530..88366	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODNK010000015.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.denovo.15, whole genome shotgun sequence	86727..87530	Streptomycin	AF321551	aadA7	100	798/798	ABODNK010000015.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.denovo.15, whole genome shotgun sequence	2976..3773	Spectinomycin, Streptomycin	AF224733	aac(6')-Iaa	97.49	438/438	ABODNK010000035.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.guided.24, whole genome shotgun sequence	4432..4869	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODNK010000039.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.guided.29, whole genome shotgun sequence	4879..5715	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODNK010000039.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.guided.29, whole genome shotgun sequence	4076..4879	Streptomycin	AF321551	aadA7	100	798/798	ABODNK010000040.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.guided.30, whole genome shotgun sequence	5033..5830	Spectinomycin, Streptomycin	AF224733	blaCMY-2	100	1146/1146	ABODNK010000015.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.denovo.15, whole genome shotgun sequence	56365..57510	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABODNK010000038.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.guided.28, whole genome shotgun sequence	11099..12244	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABODNK010000015.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.denovo.15, whole genome shotgun sequence	91502..92715	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABODNK010000041.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.guided.33, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	99.88	840/840	ABODNK010000015.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.denovo.15, whole genome shotgun sequence	1632..2471	Sulfamethoxazole	U12338	sul2	100	816/816	ABODNK010000015.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.denovo.15, whole genome shotgun sequence	85851..86666	Sulfamethoxazole	AY034138	sul2	100	816/816	ABODNK010000039.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.guided.29, whole genome shotgun sequence	3200..4015	Sulfamethoxazole	AY034138	sul1	99.88	840/840	ABODNK010000040.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.guided.30, whole genome shotgun sequence	6335..7174	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABODNK010000015.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.denovo.15, whole genome shotgun sequence	89627..90901	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABODNK010000039.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.guided.29, whole genome shotgun sequence	6976..8250	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncC	100	417 / 417	ABODNK010000024.1 Salmonella enterica strain PNUSAS393688 SAMN37887160-rid19911523.denovo.25, whole genome shotgun sequence	17478..17894																																																						avrA	ABODNK010000002.1	149828..150697	99.655	870	0						
GCA_032873035.1_PDT001948503.1_genomic.fna	Salmonella_enterica	0.5216	203.759 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODNM010000001.1 Salmonella enterica strain PNUSAS393692 SAMN37887157-rid19911513.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODNM010000054.1 Salmonella enterica strain PNUSAS393692 SAMN37887157-rid19911513.guided.40, whole genome shotgun sequence	2930..3367	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABODNM010000027.1 Salmonella enterica strain PNUSAS393692 SAMN37887157-rid19911513.denovo.27, whole genome shotgun sequence	11372..12571	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABODNM010000053.1 Salmonella enterica strain PNUSAS393692 SAMN37887157-rid19911513.guided.36, whole genome shotgun sequence	3548..4747	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABODNM010000029.1 Salmonella enterica strain PNUSAS393692 SAMN37887157-rid19911513.denovo.29, whole genome shotgun sequence	9109..9668																																																						avrA	ABODNM010000004.1	94091..94960	99.655	870	0						
GCA_032873055.1_PDT001948502.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODNN010000001.1 Salmonella enterica strain PNUSAS393679 SAMN37887149-rid19911503.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODNN010000012.1 Salmonella enterica strain PNUSAS393679 SAMN37887149-rid19911503.denovo.13, whole genome shotgun sequence	40537..41179	enterobacteriales	IncFII(S)	100	262 / 262	ABODNN010000016.1 Salmonella enterica strain PNUSAS393679 SAMN37887149-rid19911503.denovo.18, whole genome shotgun sequence	3436..3697																																																avrA	ABODNN010000002.1	553636..554505	99.54	870	0						
GCA_032873075.1_PDT001948499.1_genomic.fna	Salmonella_enterica	0.5209	754.818 KB	3	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABODNQ010000001.1 Salmonella enterica strain PNUSAS393690 SAMN37887155-rid19912763.denovo.01, whole genome shotgun sequence	481995..482432	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABODNQ010000025.1 Salmonella enterica strain PNUSAS393690 SAMN37887155-rid19912763.guided.13, whole genome shotgun sequence	14498..14935	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABODNQ010000017.1 Salmonella enterica strain PNUSAS393690 SAMN37887155-rid19912763.denovo.20, whole genome shotgun sequence	557..687																																																						avrA	ABODNQ010000003.1	185062..185931	99.195	870	0						
GCA_032873095.1_PDT001948500.1_genomic.fna	Salmonella_enterica	0.52	430.461 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODNP010000008.1 Salmonella enterica strain PNUSAS393676 SAMN37887148-rid19911493.denovo.08, whole genome shotgun sequence	88728..89165	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODNP010000026.1 Salmonella enterica strain PNUSAS393676 SAMN37887148-rid19911493.guided.15, whole genome shotgun sequence	2740..3177	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODNP010000009.1	232053..232921	99.195	870	0						
GCA_032873115.1_PDT001948498.1_genomic.fna	Salmonella_enterica	0.5203	478.717 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODNS010000001.1 Salmonella enterica strain PNUSAS393673 SAMN37887142-rid19911483.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODNS010000026.1 Salmonella enterica strain PNUSAS393673 SAMN37887142-rid19911483.guided.17, whole genome shotgun sequence	3316..3753	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODNS010000012.1 Salmonella enterica strain PNUSAS393673 SAMN37887142-rid19911483.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABODNS010000017.1 Salmonella enterica strain PNUSAS393673 SAMN37887142-rid19911483.denovo.19, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.93	374 / 374	ABODNS010000013.1 Salmonella enterica strain PNUSAS393673 SAMN37887142-rid19911483.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABODNS010000002.1	553690..554559	99.54	870	0						
GCA_032873395.1_PDT001948432.1_genomic.fna	Salmonella_enterica	0.5224	76.955 KB	20	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODOA010000014.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314599 SAMN37887063-rid19912403.denovo.014, whole genome shotgun sequence	17246..17683	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODOA010000125.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314599 SAMN37887063-rid19912403.guided.049, whole genome shotgun sequence	14042..14479	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODOA010000084.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314599 SAMN37887063-rid19912403.denovo.087, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABODOA010000094.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314599 SAMN37887063-rid19912403.denovo.097, whole genome shotgun sequence	3402..3663																																																avrA	ABODOA010000036.1	43606..44475	99.54	870	0						
GCA_032873465.1_PDT001948436.1_genomic.fna	Salmonella_enterica	0.5229	79.978 KB	20	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODNZ010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314595 SAMN37887066-rid19912423.denovo.012, whole genome shotgun sequence	17795..18232	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODNZ010000136.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314595 SAMN37887066-rid19912423.guided.093, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODNZ010000088.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314595 SAMN37887066-rid19912423.denovo.089, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABODNZ010000096.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314595 SAMN37887066-rid19912423.denovo.099, whole genome shotgun sequence	3425..3686																																																avrA	ABODNZ010000018.1	81622..82491	99.54	870	0						
GCA_032873495.1_PDT001948428.1_genomic.fna	Salmonella_enterica	0.5229	73.739 KB	22	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_58,thrA_4	412	-:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col156,Col8282,ColpVC,ColpVC	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABODOB010000002.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22314592 SAMN37887040-rid19911173.denovo.002, whole genome shotgun sequence	17429..17866	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABODOB010000123.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22314592 SAMN37887040-rid19911173.guided.084, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	96.1	154 / 154	ABODOB010000099.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22314592 SAMN37887040-rid19911173.denovo.102, whole genome shotgun sequence	483..636	enterobacteriales	Col8282	100	207 / 207	ABODOB010000096.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22314592 SAMN37887040-rid19911173.denovo.099, whole genome shotgun sequence	414..620		enterobacteriales	ColpVC	96.89	193 / 193	ABODOB010000105.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22314592 SAMN37887040-rid19911173.denovo.108, whole genome shotgun sequence	1524..1716		enterobacteriales	ColpVC	98.96	193 / 193	ABODOB010000107.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS22314592 SAMN37887040-rid19911173.denovo.110, whole genome shotgun sequence	805..997																																		avrA	ABODOB010000039.1	43676..44545	99.54	870	0						
GCA_032873615.1_PDT001948427.1_genomic.fna	Salmonella_enterica	0.5226	83.987 KB	18	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODOC010000046.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS22314591 SAMN37887039-rid19912363.denovo.046, whole genome shotgun sequence	14118..14555	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODOC010000117.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS22314591 SAMN37887039-rid19912363.guided.055, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032874775.1_PDT001948435.1_genomic.fna	Salmonella_enterica	0.5224	52.814 KB	30	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODQE010000017.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314593 SAMN37887064-rid19911193.denovo.017, whole genome shotgun sequence	11346..11783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODQE010000179.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314593 SAMN37887064-rid19911193.guided.093, whole genome shotgun sequence	15607..16044	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABODQE010000047.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314593 SAMN37887064-rid19911193.denovo.048, whole genome shotgun sequence	1532..2677	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABODQE010000182.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314593 SAMN37887064-rid19911193.guided.130, whole genome shotgun sequence	948..2093	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABODQE010000092.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314593 SAMN37887064-rid19911193.denovo.094, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABODQE010000180.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314593 SAMN37887064-rid19911193.guided.118, whole genome shotgun sequence	3336..4151	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABODQE010000092.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314593 SAMN37887064-rid19911193.denovo.094, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABODQE010000180.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314593 SAMN37887064-rid19911193.guided.118, whole genome shotgun sequence	6328..7527	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABODQE010000124.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314593 SAMN37887064-rid19911193.denovo.128, whole genome shotgun sequence	1326..1445	enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABODQE010000132.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314593 SAMN37887064-rid19911193.denovo.137, whole genome shotgun sequence	371..501		enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABODQE010000133.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314593 SAMN37887064-rid19911193.denovo.138, whole genome shotgun sequence	3134..3264		enterobacteriales	IncC	100	417 / 417	ABODQE010000070.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314593 SAMN37887064-rid19911193.denovo.071, whole genome shotgun sequence	22292..22708																																		avrA	ABODQE010000007.1	99929..100798	99.885	870	0						
GCA_032874795.1_PDT001948437.1_genomic.fna	Salmonella_enterica	0.523	52.235 KB	32	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aadA1	99.75	792/792	ABODQD010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314596 SAMN37887067-rid19912433.denovo.052, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABODQD010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314596 SAMN37887067-rid19912433.denovo.052, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABODQD010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314596 SAMN37887067-rid19912433.denovo.063, whole genome shotgun sequence	14134..14571	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABODQD010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314596 SAMN37887067-rid19912433.denovo.126, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABODQD010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314596 SAMN37887067-rid19912433.denovo.126, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABODQD010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314596 SAMN37887067-rid19912433.guided.072, whole genome shotgun sequence	14165..14602	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABODQD010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314596 SAMN37887067-rid19912433.guided.117, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABODQD010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314596 SAMN37887067-rid19912433.guided.117, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABODQD010000172.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314596 SAMN37887067-rid19912433.guided.125, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABODQD010000172.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314596 SAMN37887067-rid19912433.guided.125, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABODQD010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314596 SAMN37887067-rid19912433.denovo.052, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABODQD010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314596 SAMN37887067-rid19912433.guided.117, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABODQD010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314596 SAMN37887067-rid19912433.denovo.052, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABODQD010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314596 SAMN37887067-rid19912433.guided.106, whole genome shotgun sequence	4983..6182	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABODQD010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314596 SAMN37887067-rid19912433.denovo.032, whole genome shotgun sequence	37040..37599																																																						avrA	ABODQD010000037.1	39538..40407	99.655	870	0						
GCA_032874835.1_PDT001948434.1_genomic.fna	Salmonella_enterica	0.5217	60.865 KB	28	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	3	IncFIB(AP001918),IncFIC(FII),IncI1-I(Alpha)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODQG010000039.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.denovo.039, whole genome shotgun sequence	31195..31632	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABODQG010000112.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.denovo.115, whole genome shotgun sequence	6052..6854	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABODQG010000112.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.denovo.115, whole genome shotgun sequence	6052..6855	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABODQG010000112.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.denovo.115, whole genome shotgun sequence	6052..6855	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABODQG010000112.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.denovo.115, whole genome shotgun sequence	6052..6855	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABODQG010000112.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.denovo.115, whole genome shotgun sequence	5312..6052	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABODQG010000112.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.denovo.115, whole genome shotgun sequence	5312..6052	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABODQG010000195.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.guided.052, whole genome shotgun sequence	15444..15881	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABODQG010000198.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.guided.121, whole genome shotgun sequence	641..1443	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABODQG010000198.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.guided.121, whole genome shotgun sequence	640..1443	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABODQG010000198.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.guided.121, whole genome shotgun sequence	640..1443	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABODQG010000198.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.guided.121, whole genome shotgun sequence	640..1443	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABODQG010000198.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.guided.121, whole genome shotgun sequence	1443..2183	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABODQG010000198.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.guided.121, whole genome shotgun sequence	1443..2183	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABODQG010000136.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.denovo.140, whole genome shotgun sequence	1155..1836	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABODQG010000099.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.denovo.101, whole genome shotgun sequence	1885..2381		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABODQG010000155.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314594 SAMN37887065-rid19912413.denovo.159, whole genome shotgun sequence	1883..2024																																									avrA	ABODQG010000051.1	24896..25765	98.966	870	0						
GCA_032874875.1_PDT001948429.1_genomic.fna	Salmonella_enterica	0.5196	58.841 KB	27	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	2	IncHI2,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODQN010000015.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314597 SAMN37887061-rid19912373.denovo.015, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODQN010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314597 SAMN37887061-rid19912373.denovo.053, whole genome shotgun sequence	4033..4869	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABODQN010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314597 SAMN37887061-rid19912373.denovo.053, whole genome shotgun sequence	3231..4033	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABODQN010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314597 SAMN37887061-rid19912373.denovo.053, whole genome shotgun sequence	3230..4033	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABODQN010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314597 SAMN37887061-rid19912373.denovo.053, whole genome shotgun sequence	3230..4033	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABODQN010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314597 SAMN37887061-rid19912373.denovo.053, whole genome shotgun sequence	3230..4033	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABODQN010000210.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314597 SAMN37887061-rid19912373.guided.102, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODQN010000211.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314597 SAMN37887061-rid19912373.guided.106, whole genome shotgun sequence	4074..4910	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABODQN010000211.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314597 SAMN37887061-rid19912373.guided.106, whole genome shotgun sequence	3272..4074	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABODQN010000211.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314597 SAMN37887061-rid19912373.guided.106, whole genome shotgun sequence	3271..4074	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABODQN010000211.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314597 SAMN37887061-rid19912373.guided.106, whole genome shotgun sequence	3271..4074	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABODQN010000211.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314597 SAMN37887061-rid19912373.guided.106, whole genome shotgun sequence	3271..4074	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABODQN010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314597 SAMN37887061-rid19912373.denovo.043, whole genome shotgun sequence	23143..23469	enterobacteriales	IncX1	100	373 / 373	ABODQN010000159.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314597 SAMN37887061-rid19912373.denovo.163, whole genome shotgun sequence	1151..1523																																																avrA	ABODQN010000007.1	94074..94943	99.655	870	0						
GCA_032874895.1_PDT001948425.1_genomic.fna	Salmonella_enterica	0.5231	106.654 KB	16	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABODQM010000027.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314589 SAMN37887037-rid19911163.denovo.027, whole genome shotgun sequence	12398..12835	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODQM010000069.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314589 SAMN37887037-rid19911163.denovo.071, whole genome shotgun sequence	2487..3323	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODQM010000069.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314589 SAMN37887037-rid19911163.denovo.071, whole genome shotgun sequence	3323..4126	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	ABODQM010000098.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314589 SAMN37887037-rid19911163.guided.077, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODQM010000099.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314589 SAMN37887037-rid19911163.guided.083, whole genome shotgun sequence	3174..4010	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODQM010000099.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314589 SAMN37887037-rid19911163.guided.083, whole genome shotgun sequence	2371..3174	Streptomycin	AF321551	blaTEM-1A	100	861/861	ABODQM010000069.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314589 SAMN37887037-rid19911163.denovo.071, whole genome shotgun sequence	5164..6024	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABODQM010000099.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314589 SAMN37887037-rid19911163.guided.083, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	ABODQM010000059.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314589 SAMN37887037-rid19911163.denovo.060, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABODQM010000100.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314589 SAMN37887037-rid19911163.guided.085, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABODQM010000069.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314589 SAMN37887037-rid19911163.denovo.071, whole genome shotgun sequence	4187..5002	Sulfamethoxazole	AY034138	sul2	100	816/816	ABODQM010000099.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314589 SAMN37887037-rid19911163.guided.083, whole genome shotgun sequence	1495..2310	Sulfamethoxazole	AY034138	tet(A)	100	1226/1275	ABODQM010000069.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314589 SAMN37887037-rid19911163.denovo.071, whole genome shotgun sequence	1..1226	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	ABODQM010000097.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314589 SAMN37887037-rid19911163.guided.074, whole genome shotgun sequence	788..1987	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABODQM010000101.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314589 SAMN37887037-rid19911163.guided.090, whole genome shotgun sequence	713..1987	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABODQM010000059.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314589 SAMN37887037-rid19911163.denovo.060, whole genome shotgun sequence	11449..11699																																																						avrA	ABODQM010000003.1	81590..82459	99.54	870	0						
GCA_032874915.1_PDT001948426.1_genomic.fna	Salmonella_enterica	0.5223	72.333 KB	20	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	-:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	-	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODQO010000019.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314590 SAMN37887038-rid19912353.denovo.019, whole genome shotgun sequence	12513..12950	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABODQO010000146.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314590 SAMN37887038-rid19912353.guided.118, whole genome shotgun sequence	909..1346	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABODQO010000069.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314590 SAMN37887038-rid19912353.denovo.070, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABODQO010000147.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314590 SAMN37887038-rid19912353.guided.130, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABODQO010000069.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314590 SAMN37887038-rid19912353.denovo.070, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABODQO010000145.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314590 SAMN37887038-rid19912353.guided.112, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABODQO010000069.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314590 SAMN37887038-rid19912353.denovo.070, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABODQO010000144.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314590 SAMN37887038-rid19912353.guided.092, whole genome shotgun sequence	4222..5061	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABODQO010000069.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314590 SAMN37887038-rid19912353.denovo.070, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABODQO010000144.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314590 SAMN37887038-rid19912353.guided.092, whole genome shotgun sequence	7737..9011	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABODQO010000069.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314590 SAMN37887038-rid19912353.denovo.070, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABODQO010000144.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314590 SAMN37887038-rid19912353.guided.092, whole genome shotgun sequence	6106..6579	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABODQO010000076.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314590 SAMN37887038-rid19912353.denovo.077, whole genome shotgun sequence	4434..4684																																																						avrA	ABODQO010000012.1	61516..62385	99.77	870	0						
GCA_032874955.1_PDT001948423.1_genomic.fna	Salmonella_enterica	0.5202	185.183 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABODQP010000010.1 Salmonella enterica strain PNUSAS393653 SAMN37887036-rid19911153.denovo.10, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABODQP010000055.1 Salmonella enterica strain PNUSAS393653 SAMN37887036-rid19911153.guided.41, whole genome shotgun sequence	8058..8492	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032875755.1_PDT001948383.1_genomic.fna	Salmonella_enterica	0.5242	69.623 KB	24	aroC_22,dnaN_104,hemD_25,hisD_113,purE_12,sucA_83,thrA_4	308	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_25	hisD	100	100	hisD_113	purE	100	100	purE_12	sucA	100	100	sucA_83	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABODSC010000006.1 Salmonella enterica subsp. enterica serovar Poona strain FSIS12325808 SAMN37886691-rid19911003.denovo.006, whole genome shotgun sequence	12575..13012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABODSC010000134.1 Salmonella enterica subsp. enterica serovar Poona strain FSIS12325808 SAMN37886691-rid19911003.guided.038, whole genome shotgun sequence	42399..42836	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODSC010000026.1	61572..62441	99.655	870	0						
GCA_032875775.1_PDT001948382.1_genomic.fna	Salmonella_enterica	0.5189	65.036 KB	26	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aph(6)-Id	100	837/837	ABODSD010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325809 SAMN37886692-rid19912083.denovo.061, whole genome shotgun sequence	2315..3151	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABODSD010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325809 SAMN37886692-rid19912083.denovo.061, whole genome shotgun sequence	1513..2315	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABODSD010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325809 SAMN37886692-rid19912083.denovo.061, whole genome shotgun sequence	1512..2315	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABODSD010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325809 SAMN37886692-rid19912083.denovo.061, whole genome shotgun sequence	1512..2315	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABODSD010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325809 SAMN37886692-rid19912083.denovo.061, whole genome shotgun sequence	1512..2315	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABODSD010000102.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325809 SAMN37886692-rid19912083.denovo.106, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODSD010000188.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325809 SAMN37886692-rid19912083.guided.060, whole genome shotgun sequence	2356..3192	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABODSD010000188.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325809 SAMN37886692-rid19912083.guided.060, whole genome shotgun sequence	1554..2356	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABODSD010000188.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325809 SAMN37886692-rid19912083.guided.060, whole genome shotgun sequence	1553..2356	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABODSD010000188.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325809 SAMN37886692-rid19912083.guided.060, whole genome shotgun sequence	1553..2356	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABODSD010000188.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325809 SAMN37886692-rid19912083.guided.060, whole genome shotgun sequence	1553..2356	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABODSD010000191.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325809 SAMN37886692-rid19912083.guided.104, whole genome shotgun sequence	6146..6583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABODSD010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325809 SAMN37886692-rid19912083.denovo.051, whole genome shotgun sequence	28959..29285	enterobacteriales	IncHI2A	99.52	630 / 630	ABODSD010000121.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325809 SAMN37886692-rid19912083.denovo.125, whole genome shotgun sequence	414..1043		enterobacteriales	IncX1	100	373 / 373	ABODSD010000138.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325809 SAMN37886692-rid19912083.denovo.142, whole genome shotgun sequence	2218..2590																																									avrA	ABODSD010000039.1	39489..40358	99.655	870	0						
GCA_032875795.1_PDT001948380.1_genomic.fna	Salmonella_enterica	0.5223	78.95 KB	19	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABODSF010000026.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain FSIS12325807 SAMN37886690-rid19910983.denovo.026, whole genome shotgun sequence	12439..12876	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABODSF010000115.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain FSIS12325807 SAMN37886690-rid19910983.guided.079, whole genome shotgun sequence	7771..8208	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODSF010000016.1	81819..82688	99.54	870	0						
GCA_032875815.1_PDT001948381.1_genomic.fna	Salmonella_enterica	0.5224	80.404 KB	23	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODSE010000030.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325805 SAMN37886689-rid19910993.denovo.030, whole genome shotgun sequence	17839..18276	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODSE010000131.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325805 SAMN37886689-rid19910993.guided.076, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODSE010000079.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325805 SAMN37886689-rid19910993.denovo.082, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABODSE010000082.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325805 SAMN37886689-rid19910993.denovo.085, whole genome shotgun sequence	3413..3674																																																avrA	ABODSE010000006.1	39622..40491	99.54	870	0						
GCA_032875835.1_PDT001948379.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODSG010000001.1 Salmonella enterica strain PNUSAS393648 SAMN37886682-rid19912073.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODSG010000027.1 Salmonella enterica strain PNUSAS393648 SAMN37886682-rid19912073.guided.23, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODSG010000018.1 Salmonella enterica strain PNUSAS393648 SAMN37886682-rid19912073.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABODSG010000014.1 Salmonella enterica strain PNUSAS393648 SAMN37886682-rid19912073.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABODSG010000002.1	553642..554511	99.54	870	0						
GCA_032875855.1_PDT001948378.1_genomic.fna	Salmonella_enterica	0.5211	57.294 KB	27	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODSH010000011.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325803 SAMN37886687-rid19910973.denovo.011, whole genome shotgun sequence	52255..52692	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODSH010000102.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325803 SAMN37886687-rid19910973.denovo.105, whole genome shotgun sequence	6156..6992	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODSH010000102.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325803 SAMN37886687-rid19910973.denovo.105, whole genome shotgun sequence	6992..7795	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABODSH010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325803 SAMN37886687-rid19910973.guided.067, whole genome shotgun sequence	15875..16312	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODSH010000204.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325803 SAMN37886687-rid19910973.guided.120, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODSH010000204.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325803 SAMN37886687-rid19910973.guided.120, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABODSH010000137.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325803 SAMN37886687-rid19910973.denovo.141, whole genome shotgun sequence	2208..3413	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABODSH010000205.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325803 SAMN37886687-rid19910973.guided.144, whole genome shotgun sequence	1791..2996	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABODSH010000134.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325803 SAMN37886687-rid19910973.denovo.138, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABODSH010000102.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325803 SAMN37886687-rid19910973.denovo.105, whole genome shotgun sequence	5272..5533		enterobacteriales	IncFII	96.95	262 / 261	ABODSH010000204.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325803 SAMN37886687-rid19910973.guided.120, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABODSH010000147.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325803 SAMN37886687-rid19910973.denovo.152, whole genome shotgun sequence	237..378		enterobacteriales	IncX1	100	373 / 373	ABODSH010000158.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325803 SAMN37886687-rid19910973.denovo.163, whole genome shotgun sequence	1118..1490																											avrA	ABODSH010000041.1	39484..40353	99.655	870	0						
GCA_032875875.1_PDT001948377.1_genomic.fna	Salmonella_enterica	0.5214	191.426 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODSI010000001.1 Salmonella enterica strain PNUSAS393649 SAMN37886679-rid19912063.denovo.01, whole genome shotgun sequence	115023..115460	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODSI010000054.1 Salmonella enterica strain PNUSAS393649 SAMN37886679-rid19912063.guided.45, whole genome shotgun sequence	1768..2205	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABODSI010000043.1 Salmonella enterica strain PNUSAS393649 SAMN37886679-rid19912063.denovo.46, whole genome shotgun sequence	483..636																																																						avrA	ABODSI010000008.1	123445..124313	99.77	870	0						
GCA_032875895.1_PDT001948376.1_genomic.fna	Salmonella_enterica	0.5208	754.856 KB	3	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABODSJ010000001.1 Salmonella enterica strain PNUSAS393650 SAMN37886686-rid19910963.denovo.01, whole genome shotgun sequence	648575..649012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABODSJ010000017.1 Salmonella enterica strain PNUSAS393650 SAMN37886686-rid19910963.guided.15, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODSJ010000004.1	600651..601520	99.425	870	0						
GCA_032875915.1_PDT001948375.1_genomic.fna	Salmonella_enterica	0.5227	79.331 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODSK010000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325804 SAMN37886688-rid19912053.denovo.004, whole genome shotgun sequence	12476..12913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODSK010000123.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325804 SAMN37886688-rid19912053.guided.061, whole genome shotgun sequence	9885..10322	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABODSK010000064.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325804 SAMN37886688-rid19912053.denovo.066, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABODSK010000051.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325804 SAMN37886688-rid19912053.denovo.051, whole genome shotgun sequence	29395..29656																																																avrA	ABODSK010000005.1	106068..106936	100	869	0						
GCA_032875935.1_PDT001948374.1_genomic.fna	Salmonella_enterica	0.5221	212.005 KB	8	aroC_48,dnaN_108,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	356	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_108	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODSL010000011.1 Salmonella enterica strain PNUSAS393564 SAMN37886660-rid19912043.denovo.11, whole genome shotgun sequence	37916..38353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODSL010000051.1 Salmonella enterica strain PNUSAS393564 SAMN37886660-rid19912043.guided.41, whole genome shotgun sequence	3691..4128	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032875955.1_PDT001948373.1_genomic.fna	Salmonella_enterica	0.5223	56.954 KB	24	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:f,g:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	f,g	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODSM010000020.1 Salmonella enterica subsp. enterica strain FSIS12325778 SAMN37886685-rid19910953.denovo.020, whole genome shotgun sequence	52323..52760	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODSM010000169.1 Salmonella enterica subsp. enterica strain FSIS12325778 SAMN37886685-rid19910953.guided.081, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABODSM010000124.1 Salmonella enterica subsp. enterica strain FSIS12325778 SAMN37886685-rid19910953.denovo.127, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABODSM010000121.1 Salmonella enterica subsp. enterica strain FSIS12325778 SAMN37886685-rid19910953.denovo.124, whole genome shotgun sequence	3175..3285																																																avrA	ABODSM010000002.1	137280..138149	99.425	870	0						
GCA_032875975.1_PDT001948372.1_genomic.fna	Salmonella_enterica	0.5211	266.637 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODSN010000001.1 Salmonella enterica strain PNUSAS393647 SAMN37886684-rid19912033.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODSN010000048.1 Salmonella enterica strain PNUSAS393647 SAMN37886684-rid19912033.guided.33, whole genome shotgun sequence	20661..21098	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABODSN010000039.1 Salmonella enterica strain PNUSAS393647 SAMN37886684-rid19912033.denovo.41, whole genome shotgun sequence	483..636																																																						avrA	ABODSN010000007.1	184453..185321	99.77	870	0						
GCA_032875995.1_PDT001948370.1_genomic.fna	Salmonella_enterica	0.5224	397.484 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODSO010000001.1 Salmonella enterica strain PNUSAS393640 SAMN37886612-rid19910933.denovo.01, whole genome shotgun sequence	454795..455232	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODSO010000027.1 Salmonella enterica strain PNUSAS393640 SAMN37886612-rid19910933.guided.22, whole genome shotgun sequence	3613..4050	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODSO010000002.1	183093..183962	98.966	870	0						
GCA_032876015.1_PDT001948371.1_genomic.fna	Salmonella_enterica	0.521	278.34 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODSQ010000001.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABODSQ010000032.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.denovo.34, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABODSQ010000032.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.denovo.34, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABODSQ010000047.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.denovo.55, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODSQ010000047.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.denovo.55, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABODSQ010000059.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.guided.28, whole genome shotgun sequence	12878..13315	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABODSQ010000062.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.guided.37, whole genome shotgun sequence	6042..6833	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABODSQ010000063.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.guided.38, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABODSQ010000066.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.guided.54, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODSQ010000066.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.guided.54, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABODSQ010000045.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.denovo.52, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABODSQ010000067.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.guided.56, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABODSQ010000032.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.denovo.34, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABODSQ010000040.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.denovo.45, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABODSQ010000062.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.guided.37, whole genome shotgun sequence	7095..8354	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABODSQ010000063.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.guided.38, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABODSQ010000065.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.guided.49, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABODSQ010000068.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.guided.59, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABODSQ010000069.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.guided.60, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABODSQ010000070.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.guided.61, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABODSQ010000071.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.guided.62, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABODSQ010000031.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.denovo.33, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABODSQ010000032.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.denovo.34, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABODSQ010000061.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.guided.36, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABODSQ010000063.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.guided.38, whole genome shotgun sequence	4527..6446	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABODSQ010000032.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.denovo.34, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABODSQ010000062.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.guided.37, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																															enterobacteriales	Col156	94.81	154 / 154	ABODSQ010000034.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.denovo.39, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABODSQ010000042.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.denovo.48, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABODSQ010000046.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.denovo.53, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABODSQ010000028.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.denovo.29, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABODSQ010000022.1 Salmonella enterica strain PNUSAS393600 SAMN37886657-rid19910943.denovo.22, whole genome shotgun sequence	55745..56241																											avrA	ABODSQ010000002.1	508765..509634	99.885	870	0						
GCA_032876035.1_PDT001948369.1_genomic.fna	Salmonella_enterica	0.5213	322.706 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODSR010000001.1 Salmonella enterica strain PNUSAS393583 SAMN37886651-rid19912023.denovo.01, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODSR010000041.1 Salmonella enterica strain PNUSAS393583 SAMN37886651-rid19912023.guided.33, whole genome shotgun sequence	1025..1462	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODSR010000003.1	402303..403171	100	869	0						
GCA_032876055.1_PDT001948368.1_genomic.fna	Salmonella_enterica	0.5229	106.954 KB	15	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODSP010000006.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325777 SAMN37886683-rid19910923.denovo.06, whole genome shotgun sequence	15488..15925	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODSP010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325777 SAMN37886683-rid19910923.guided.29, whole genome shotgun sequence	10889..11326	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODSP010000004.1	125509..126378	99.655	870	0						
GCA_032876075.1_PDT001948367.1_genomic.fna	Salmonella_enterica	0.5216	443.33 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODSS010000001.1 Salmonella enterica strain PNUSAS393651 SAMN37886680-rid19912013.denovo.01, whole genome shotgun sequence	645053..645490	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABODSS010000021.1 Salmonella enterica strain PNUSAS393651 SAMN37886680-rid19912013.guided.18, whole genome shotgun sequence	19619..20056	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODSS010000002.1	514748..515616	99.655	870	0						
GCA_032876095.1_PDT001948365.1_genomic.fna	Salmonella_enterica	0.522	108.086 KB	11	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	-:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:l,v:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODSU010000001.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325644 SAMN37886681-rid19912003.denovo.01, whole genome shotgun sequence	60374..60811	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODSU010000078.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325644 SAMN37886681-rid19912003.guided.42, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABODSU010000062.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325644 SAMN37886681-rid19912003.denovo.65, whole genome shotgun sequence	358..488																																																																	
GCA_032876115.1_PDT001948366.1_genomic.fna	Salmonella_enterica	0.521	699.691 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODST010000001.1 Salmonella enterica strain PNUSAS393589 SAMN37886624-rid19910913.denovo.01, whole genome shotgun sequence	510589..511026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODST010000019.1 Salmonella enterica strain PNUSAS393589 SAMN37886624-rid19910913.guided.07, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODST010000002.1	544422..545290	99.425	870	0						
GCA_032876135.1_PDT001948364.1_genomic.fna	Salmonella_enterica	0.5217	341.252 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODSV010000004.1 Salmonella enterica strain PNUSAS393568 SAMN37886621-rid19911993.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODSV010000034.1 Salmonella enterica strain PNUSAS393568 SAMN37886621-rid19911993.guided.24, whole genome shotgun sequence	16561..16998	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABODSV010000016.1 Salmonella enterica strain PNUSAS393568 SAMN37886621-rid19911993.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABODSV010000016.1 Salmonella enterica strain PNUSAS393568 SAMN37886621-rid19911993.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABODSV010000001.1	446736..447604	100	869	0						
GCA_032876155.1_PDT001948362.1_genomic.fna	Salmonella_enterica	0.5225	228.923 KB	5	aroC_22,dnaN_104,hemD_25,hisD_113,purE_12,sucA_83,thrA_4	308	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_25	hisD	100	100	hisD_113	purE	100	100	purE_12	sucA	100	100	sucA_83	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABODSX010000001.1 Salmonella enterica strain PNUSAS393652 SAMN37886678-rid19911983.denovo.01, whole genome shotgun sequence	454136..454573	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABODSX010000031.1 Salmonella enterica strain PNUSAS393652 SAMN37886678-rid19911983.guided.25, whole genome shotgun sequence	7324..7761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.84	131 / 130	ABODSX010000025.1 Salmonella enterica strain PNUSAS393652 SAMN37886678-rid19911983.denovo.29, whole genome shotgun sequence	3453..3583																																																						avrA	ABODSX010000005.1	140433..141302	99.655	870	0						
GCA_032876175.1_PDT001948363.1_genomic.fna	Salmonella_enterica	0.5206	655.998 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODSW010000001.1 Salmonella enterica strain PNUSAS393598 SAMN37886664-rid19910903.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODSW010000047.1 Salmonella enterica strain PNUSAS393598 SAMN37886664-rid19910903.guided.12, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODSW010000003.1	504334..505204	99.196	871	0						
GCA_032876195.1_PDT001948361.1_genomic.fna	Salmonella_enterica	0.5196	309.819 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODSY010000001.1 Salmonella enterica strain PNUSAS393643 SAMN37886615-rid19910893.denovo.01, whole genome shotgun sequence	477381..477818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODSY010000045.1 Salmonella enterica strain PNUSAS393643 SAMN37886615-rid19910893.guided.32, whole genome shotgun sequence	7244..7681	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABODSY010000033.1 Salmonella enterica strain PNUSAS393643 SAMN37886615-rid19910893.denovo.36, whole genome shotgun sequence	626..1159	enterobacteriales	IncX1	98.4	374 / 374	ABODSY010000023.1 Salmonella enterica strain PNUSAS393643 SAMN37886615-rid19910893.denovo.24, whole genome shotgun sequence	6956..7329																																																avrA	ABODSY010000017.1	39348..40218	99.196	871	0						
GCA_032876215.1_PDT001948360.1_genomic.fna	Salmonella_enterica	0.5212	282.827 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,blaTEM-1B,cmlA1,floR,floR,cmlA1,sul2,sul2,sul2,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(M),tet(B),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODSZ010000001.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABODSZ010000031.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.31, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABODSZ010000031.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.31, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABODSZ010000048.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.57, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODSZ010000048.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.57, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABODSZ010000061.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.41, whole genome shotgun sequence	2469..2906	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABODSZ010000065.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.50, whole genome shotgun sequence	1182..1973	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABODSZ010000066.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.51, whole genome shotgun sequence	81..872	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABODSZ010000067.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.55, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODSZ010000067.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.55, whole genome shotgun sequence	69..872	Streptomycin	AF321551	aph(6)-Id	99.88	837/837	ABODSZ010000068.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.56, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODSZ010000068.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.56, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABODSZ010000046.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.53, whole genome shotgun sequence	533..1393	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	99.88	861/861	ABODSZ010000071.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.60, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABODSZ010000072.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.61, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABODSZ010000031.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.31, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABODSZ010000043.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.46, whole genome shotgun sequence	999..2212	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABODSZ010000064.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.49, whole genome shotgun sequence	757..1970	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABODSZ010000069.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.58, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	sul2	100	770/816	ABODSZ010000044.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.48, whole genome shotgun sequence	1..770	Sulfamethoxazole	AB366440	sul2	100	770/816	ABODSZ010000044.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.48, whole genome shotgun sequence	1..770	Sulfamethoxazole	FN995456	sul2	100	770/816	ABODSZ010000044.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.48, whole genome shotgun sequence	1..770	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABODSZ010000073.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.67, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABODSZ010000074.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.68, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABODSZ010000075.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.69, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABODSZ010000076.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.70, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABODSZ010000030.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.30, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABODSZ010000031.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.31, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABODSZ010000063.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.47, whole genome shotgun sequence	324..2243	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABODSZ010000070.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.59, whole genome shotgun sequence	50..1255	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABODSZ010000031.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.31, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABODSZ010000065.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.guided.50, whole genome shotgun sequence	277..774	Trimethoprim	AM040708																																																																																																																																																																																																																																																												enterobacteriales	Col156	94.81	154 / 154	ABODSZ010000036.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.37, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABODSZ010000042.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.45, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABODSZ010000047.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.54, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABODSZ010000027.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.27, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABODSZ010000022.1 Salmonella enterica strain PNUSAS393553 SAMN37886606-rid19910883.denovo.22, whole genome shotgun sequence	55562..56058																											avrA	ABODSZ010000002.1	508765..509634	99.885	870	0						
GCA_032876235.1_PDT001948359.1_genomic.fna	Salmonella_enterica	0.521	279.77 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA1,aadA2,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,floR,cmlA1,sul2,sul2,sul2,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(B),tet(M),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODTA010000001.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABODTA010000031.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.32, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABODTA010000031.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.32, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABODTA010000050.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.60, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODTA010000050.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.60, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABODTA010000061.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.guided.40, whole genome shotgun sequence	2122..2559	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABODTA010000062.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.guided.42, whole genome shotgun sequence	597..1388	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABODTA010000065.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.guided.54, whole genome shotgun sequence	791..1582	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	837/837	ABODTA010000067.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.guided.59, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODTA010000067.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.guided.59, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABODTA010000048.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.57, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABODTA010000069.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.guided.62, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABODTA010000031.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.32, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABODTA010000040.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.46, whole genome shotgun sequence	1107..2320	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABODTA010000064.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.guided.52, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABODTA010000066.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.guided.56, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	sul2	100	770/816	ABODTA010000046.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.53, whole genome shotgun sequence	1..770	Sulfamethoxazole	AB366440	sul2	100	770/816	ABODTA010000046.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.53, whole genome shotgun sequence	1..770	Sulfamethoxazole	FN995456	sul2	100	770/816	ABODTA010000046.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.53, whole genome shotgun sequence	1..770	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABODTA010000070.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.guided.64, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABODTA010000071.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.guided.65, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABODTA010000072.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.guided.66, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABODTA010000073.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.guided.67, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABODTA010000030.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.31, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABODTA010000031.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.32, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABODTA010000059.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.guided.34, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.04	1843/1920	ABODTA010000062.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.guided.42, whole genome shotgun sequence	3316..5158	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABODTA010000063.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.guided.44, whole genome shotgun sequence	511..2430	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABODTA010000031.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.32, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABODTA010000068.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.guided.61, whole genome shotgun sequence	172..669	Trimethoprim	AM040708																																																																																																																																																																																																																																																																										enterobacteriales	Col156	94.81	154 / 154	ABODTA010000035.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.38, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABODTA010000045.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.51, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABODTA010000049.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.58, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABODTA010000027.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.27, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABODTA010000022.1 Salmonella enterica strain PNUSAS393585 SAMN37886654-rid19911973.denovo.22, whole genome shotgun sequence	55636..56132																											avrA	ABODTA010000002.1	508765..509634	99.885	870	0						
GCA_032876325.1_PDT001948357.1_genomic.fna	Salmonella_enterica	0.5214	376.532 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODTC010000004.1 Salmonella enterica strain PNUSAS393582 SAMN37886670-rid19911963.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODTC010000038.1 Salmonella enterica strain PNUSAS393582 SAMN37886670-rid19911963.guided.28, whole genome shotgun sequence	5669..6106	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABODTC010000015.1 Salmonella enterica strain PNUSAS393582 SAMN37886670-rid19911963.denovo.15, whole genome shotgun sequence	48406..49048	enterobacteriales	IncFII(S)	100	262 / 262	ABODTC010000015.1 Salmonella enterica strain PNUSAS393582 SAMN37886670-rid19911963.denovo.15, whole genome shotgun sequence	64133..64394																																																avrA	ABODTC010000001.1	446733..447601	100	869	0						
GCA_032876345.1_PDT001948355.1_genomic.fna	Salmonella_enterica	0.5219	378.607 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODTF010000003.1 Salmonella enterica strain PNUSAS393575 SAMN37886645-rid19911953.denovo.03, whole genome shotgun sequence	145209..145646	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODTF010000047.1 Salmonella enterica strain PNUSAS393575 SAMN37886645-rid19911953.guided.33, whole genome shotgun sequence	4710..5147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABODTF010000016.1 Salmonella enterica strain PNUSAS393575 SAMN37886645-rid19911953.denovo.16, whole genome shotgun sequence	36048..36690	enterobacteriales	IncFII(S)	100	262 / 262	ABODTF010000016.1 Salmonella enterica strain PNUSAS393575 SAMN37886645-rid19911953.denovo.16, whole genome shotgun sequence	51775..52036																																																avrA	ABODTF010000001.1	450792..451661	99.885	870	0						
GCA_032876365.1_PDT001948354.1_genomic.fna	Salmonella_enterica	0.5214	682.831 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODTD010000001.1 Salmonella enterica strain PNUSAS393604 SAMN37886667-rid19911943.denovo.01, whole genome shotgun sequence	596383..596820	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODTD010000021.1 Salmonella enterica strain PNUSAS393604 SAMN37886667-rid19911943.guided.19, whole genome shotgun sequence	637..1074	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODTD010000007.1	119682..120550	99.425	870	0						
GCA_032876395.1_PDT001948356.1_genomic.fna	Salmonella_enterica	0.5211	282.342 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(M),tet(B),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODTE010000001.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABODTE010000032.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.denovo.32, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABODTE010000032.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.denovo.32, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABODTE010000051.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.denovo.60, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODTE010000051.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.denovo.60, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aadA2	100	792/792	ABODTE010000066.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.guided.45, whole genome shotgun sequence	694..1485	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABODTE010000068.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.guided.51, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABODTE010000071.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.guided.59, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODTE010000071.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.guided.59, whole genome shotgun sequence	69..872	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABODTE010000074.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.guided.66, whole genome shotgun sequence	363..800	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABODTE010000049.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.denovo.57, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABODTE010000072.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.guided.61, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABODTE010000032.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.denovo.32, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABODTE010000040.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.denovo.42, whole genome shotgun sequence	1034..2247	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABODTE010000066.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.guided.45, whole genome shotgun sequence	1747..3006	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABODTE010000068.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.guided.51, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABODTE010000069.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.guided.53, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABODTE010000075.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.guided.68, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABODTE010000076.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.guided.69, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABODTE010000077.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.guided.70, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABODTE010000078.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.guided.71, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABODTE010000031.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.denovo.31, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABODTE010000032.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.denovo.32, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABODTE010000064.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.guided.41, whole genome shotgun sequence	873..2792	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABODTE010000065.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.guided.44, whole genome shotgun sequence	2114..3319	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABODTE010000032.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.denovo.32, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABODTE010000070.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.guided.56, whole genome shotgun sequence	465..962	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																															enterobacteriales	Col156	94.81	154 / 154	ABODTE010000037.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.denovo.37, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABODTE010000045.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.denovo.50, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABODTE010000050.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.denovo.58, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABODTE010000030.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.denovo.30, whole genome shotgun sequence	17994..18675		enterobacteriales	IncFIC(FII)	94	500 / 499	ABODTE010000023.1 Salmonella enterica strain PNUSAS393611 SAMN37886603-rid19910863.denovo.23, whole genome shotgun sequence	55562..56058																											avrA	ABODTE010000002.1	402872..403741	99.885	870	0						
GCA_032876405.1_PDT001948358.1_genomic.fna	Salmonella_enterica	0.5202	412.062 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODTB010000001.1 Salmonella enterica strain PNUSAS393569 SAMN37886663-rid19910873.denovo.01, whole genome shotgun sequence	383528..383965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODTB010000046.1 Salmonella enterica strain PNUSAS393569 SAMN37886663-rid19910873.guided.26, whole genome shotgun sequence	1449..1886	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODTB010000002.1	504322..505192	99.196	871	0						
GCA_032876435.1_PDT001948352.1_genomic.fna	Salmonella_enterica	0.5213	434.922 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODTH010000001.1 Salmonella enterica strain PNUSAS393574 SAMN37886633-rid19911923.denovo.01, whole genome shotgun sequence	960676..961113	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODTH010000043.1 Salmonella enterica strain PNUSAS393574 SAMN37886633-rid19911923.guided.32, whole genome shotgun sequence	731..1168	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABODTH010000022.1 Salmonella enterica strain PNUSAS393574 SAMN37886633-rid19911923.denovo.22, whole genome shotgun sequence	6285..6927	enterobacteriales	IncFII(Yp)	92.64	231 / 230	ABODTH010000015.1 Salmonella enterica strain PNUSAS393574 SAMN37886633-rid19911923.denovo.15, whole genome shotgun sequence	2926..3154																																																avrA	ABODTH010000005.1	93871..94740	99.425	870	0						
GCA_032876455.1_PDT001948351.1_genomic.fna	Salmonella_enterica	0.5211	279.77 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,floR,floR,floR,sul2,sul2,sul2,sul2,tet(M),tet(B),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODTI010000001.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.denovo.01, whole genome shotgun sequence	282690..283127	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABODTI010000031.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.denovo.31, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABODTI010000031.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.denovo.31, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABODTI010000048.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.denovo.54, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODTI010000048.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.denovo.54, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aadA2	100	792/792	ABODTI010000064.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.44, whole genome shotgun sequence	2534..3325	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABODTI010000068.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.55, whole genome shotgun sequence	258..1049	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABODTI010000069.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.60, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODTI010000069.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.60, whole genome shotgun sequence	69..872	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABODTI010000071.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.63, whole genome shotgun sequence	771..1208	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABODTI010000051.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.denovo.58, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABODTI010000070.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.61, whole genome shotgun sequence	463..1323	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABODTI010000031.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.denovo.31, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABODTI010000031.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.denovo.31, whole genome shotgun sequence	17356..18569	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABODTI010000067.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.53, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.02	1214/1215	ABODTI010000072.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.64, whole genome shotgun sequence	32..1245	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABODTI010000073.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.65, whole genome shotgun sequence	32..1245	Chloramphenicol, Florfenicol	AF118107	floR	98.02	1214/1215	ABODTI010000074.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.66, whole genome shotgun sequence	32..1245	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABODTI010000075.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.69, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABODTI010000076.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.70, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABODTI010000077.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.71, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABODTI010000078.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.72, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(M)	96.15	1920/1920	ABODTI010000031.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.denovo.31, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABODTI010000033.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABODTI010000062.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.35, whole genome shotgun sequence	6433..7638	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABODTI010000066.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.52, whole genome shotgun sequence	31..1950	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABODTI010000031.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.denovo.31, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABODTI010000064.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.guided.44, whole genome shotgun sequence	1629..2126	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																								enterobacteriales	Col156	94.81	154 / 154	ABODTI010000037.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.denovo.39, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABODTI010000046.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.denovo.50, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABODTI010000052.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.denovo.59, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABODTI010000030.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.denovo.30, whole genome shotgun sequence	17765..18446		enterobacteriales	IncFIC(FII)	94	500 / 499	ABODTI010000023.1 Salmonella enterica strain PNUSAS393560 SAMN37886642-rid19910853.denovo.23, whole genome shotgun sequence	55745..56241																											avrA	ABODTI010000002.1	508649..509518	99.885	870	0						
GCA_032876475.1_PDT001948353.1_genomic.fna	Salmonella_enterica	0.5219	577.271 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODTG010000001.1 Salmonella enterica strain PNUSAS393607 SAMN37886609-rid19911933.denovo.01, whole genome shotgun sequence	510630..511067	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	356/438	ABODTG010000040.1 Salmonella enterica strain PNUSAS393607 SAMN37886609-rid19911933.guided.36, whole genome shotgun sequence	1..356	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODTG010000004.1	394955..395823	99.425	870	0						
GCA_032876495.1_PDT001948350.1_genomic.fna	Salmonella_enterica	0.5195	247.991 KB	8	aroC_10,dnaN_634,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	3879	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_634	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODTJ010000016.1 Salmonella enterica strain PNUSAS393561 SAMN37886636-rid19910843.denovo.16, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODTJ010000057.1 Salmonella enterica strain PNUSAS393561 SAMN37886636-rid19910843.guided.28, whole genome shotgun sequence	9074..9511	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABODTJ010000032.1 Salmonella enterica strain PNUSAS393561 SAMN37886636-rid19910843.denovo.35, whole genome shotgun sequence	4016..4658																																																																	
GCA_032876515.1_PDT001948348.1_genomic.fna	Salmonella_enterica	0.5207	666.537 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODTL010000001.1 Salmonella enterica strain PNUSAS393596 SAMN37886627-rid19910833.denovo.01, whole genome shotgun sequence	418357..418794	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODTL010000031.1 Salmonella enterica strain PNUSAS393596 SAMN37886627-rid19910833.guided.22, whole genome shotgun sequence	2094..2531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODTL010000003.1	514960..515828	99.195	870	0						
GCA_032876535.1_PDT001948349.1_genomic.fna	Salmonella_enterica	0.522	257.839 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODTK010000001.1 Salmonella enterica strain PNUSAS393638 SAMN37886618-rid19911913.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODTK010000063.1 Salmonella enterica strain PNUSAS393638 SAMN37886618-rid19911913.guided.27, whole genome shotgun sequence	30301..30738	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	262 / 262	ABODTK010000033.1 Salmonella enterica strain PNUSAS393638 SAMN37886618-rid19911913.denovo.36, whole genome shotgun sequence	7392..7653																																																						avrA	ABODTK010000002.1	401415..402283	100	869	0						
GCA_032876555.1_PDT001948345.1_genomic.fna	Salmonella_enterica	0.5206	485.854 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODTN010000001.1 Salmonella enterica strain PNUSAS393563 SAMN37886648-rid19911893.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODTN010000041.1 Salmonella enterica strain PNUSAS393563 SAMN37886648-rid19911893.guided.14, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODTN010000003.1	504033..504903	99.196	871	0						
GCA_032876575.1_PDT001948347.1_genomic.fna	Salmonella_enterica	0.5213	577.271 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODTM010000001.1 Salmonella enterica strain PNUSAS393591 SAMN37886639-rid19911903.denovo.01, whole genome shotgun sequence	639469..639906	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODTM010000048.1 Salmonella enterica strain PNUSAS393591 SAMN37886639-rid19911903.guided.24, whole genome shotgun sequence	3535..3972	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.38	643 / 643	ABODTM010000008.1 Salmonella enterica strain PNUSAS393591 SAMN37886639-rid19911903.denovo.08, whole genome shotgun sequence	161669..162311																																																						avrA	ABODTM010000002.1	576913..577781	99.425	870	0						
GCA_032876595.1_PDT001948344.1_genomic.fna	Salmonella_enterica	0.5219	438.018 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODTO010000001.1 Salmonella enterica strain PNUSAS393642 SAMN37886630-rid19911883.denovo.01, whole genome shotgun sequence	177183..177620	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODTO010000033.1 Salmonella enterica strain PNUSAS393642 SAMN37886630-rid19911883.guided.23, whole genome shotgun sequence	13446..13883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODTO010000002.1	515824..516693	99.77	870	0						
GCA_032876615.1_PDT001948343.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODTP010000001.1 Salmonella enterica strain PNUSAS393572 SAMN37886669-rid19911873.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODTP010000023.1 Salmonella enterica strain PNUSAS393572 SAMN37886669-rid19911873.guided.15, whole genome shotgun sequence	2054..2491	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODTP010000012.1 Salmonella enterica strain PNUSAS393572 SAMN37886669-rid19911873.denovo.12, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABODTP010000016.1 Salmonella enterica strain PNUSAS393572 SAMN37886669-rid19911873.denovo.19, whole genome shotgun sequence	3398..3659																																																avrA	ABODTP010000002.1	553642..554511	99.54	870	0						
GCA_032876635.1_PDT001948341.1_genomic.fna	Salmonella_enterica	0.5142	413.229 KB	5	aroC_33,dnaN_26,hemD_30,hisD_26,purE_21,sucA_32,thrA_28	63	60:r:e,n,x,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_32	thrA	100	100	thrA_28	60	r	e,n,x,z15	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 60:r:e,n,x,z15		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABODTR010000002.1 Salmonella enterica strain PNUSAS393603 SAMN37886658-rid19910813.denovo.02, whole genome shotgun sequence	174357..174794	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABODTR010000047.1 Salmonella enterica strain PNUSAS393603 SAMN37886658-rid19910813.guided.36, whole genome shotgun sequence	669..1106	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODTR010000001.1	89687..90556	96.667	870	0						
GCA_032876655.1_PDT001948342.1_genomic.fna	Salmonella_enterica	0.5231	268.89 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODTQ010000001.1 Salmonella enterica strain PNUSAS393573 SAMN37886655-rid19911863.denovo.01, whole genome shotgun sequence	269952..270389	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODTQ010000044.1 Salmonella enterica strain PNUSAS393573 SAMN37886655-rid19911863.guided.35, whole genome shotgun sequence	445..882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODTQ010000007.1	94085..94954	99.655	870	0						
GCA_032876675.1_PDT001948340.1_genomic.fna	Salmonella_enterica	0.5218	649.48 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODTS010000001.1 Salmonella enterica strain PNUSAS393584 SAMN37886666-rid19910803.denovo.01, whole genome shotgun sequence	639284..639721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODTS010000034.1 Salmonella enterica strain PNUSAS393584 SAMN37886666-rid19910803.guided.22, whole genome shotgun sequence	242..679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODTS010000003.1	498766..499634	99.425	870	0						
GCA_032876695.1_PDT001948339.1_genomic.fna	Salmonella_enterica	0.5209	385.924 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODTT010000001.1 Salmonella enterica strain PNUSAS393608 SAMN37886659-rid19911853.denovo.01, whole genome shotgun sequence	385109..385546	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODTT010000046.1 Salmonella enterica strain PNUSAS393608 SAMN37886659-rid19911853.guided.19, whole genome shotgun sequence	16909..17346	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODTT010000002.1	534831..535701	99.196	871	0						
GCA_032876715.1_PDT001948338.1_genomic.fna	Salmonella_enterica	0.5211	282.342 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aadA1,aadA2,aadA2,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,cmlA1,cmlA1,cmlA1,cmlA1,sul2,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(M),tet(B),tet(B),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODTV010000001.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABODTV010000032.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.denovo.32, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABODTV010000032.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.denovo.32, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABODTV010000053.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.denovo.58, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODTV010000053.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.denovo.58, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aadA1	100	792/792	ABODTV010000069.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.46, whole genome shotgun sequence	1788..2579	Spectinomycin, Streptomycin	JQ414041	aadA2	99.87	792/792	ABODTV010000070.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.51, whole genome shotgun sequence	757..1548	Spectinomycin, Streptomycin	JQ364967	aadA2	100	792/792	ABODTV010000071.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.52, whole genome shotgun sequence	757..1548	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	837/837	ABODTV010000076.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.67, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODTV010000076.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.67, whole genome shotgun sequence	69..872	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABODTV010000078.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.70, whole genome shotgun sequence	411..848	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABODTV010000054.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.denovo.60, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABODTV010000073.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.59, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABODTV010000032.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.denovo.32, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABODTV010000069.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.46, whole genome shotgun sequence	436..1695	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABODTV010000070.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.51, whole genome shotgun sequence	1810..3069	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABODTV010000071.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.52, whole genome shotgun sequence	1810..3069	Chloramphenicol	M64556	sul2	100	813/816	ABODTV010000053.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.denovo.58, whole genome shotgun sequence	1708..2520	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABODTV010000079.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.75, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABODTV010000080.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.76, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABODTV010000081.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.77, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABODTV010000082.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.78, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABODTV010000030.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.denovo.30, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABODTV010000032.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.denovo.32, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABODTV010000072.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.56, whole genome shotgun sequence	873..2792	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABODTV010000074.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.64, whole genome shotgun sequence	151..1356	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABODTV010000075.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.65, whole genome shotgun sequence	151..1356	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABODTV010000032.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.denovo.32, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABODTV010000068.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.guided.45, whole genome shotgun sequence	3227..3724	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																	enterobacteriales	Col156	94.81	154 / 154	ABODTV010000039.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.denovo.39, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABODTV010000051.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.denovo.55, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABODTV010000055.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.denovo.61, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABODTV010000041.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.denovo.41, whole genome shotgun sequence	2436..3117		enterobacteriales	IncFIC(FII)	94	500 / 499	ABODTV010000025.1 Salmonella enterica strain PNUSAS393606 SAMN37886656-rid19910793.denovo.25, whole genome shotgun sequence	37207..37703																											avrA	ABODTV010000002.1	402732..403601	99.885	870	0						
GCA_032876735.1_PDT001948337.1_genomic.fna	Salmonella_enterica	0.5211	279.77 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aadA2,aac(6')-Iaa,aadA1,blaTEM-1B,blaTEM-1B,cmlA1,floR,floR,cmlA1,sul2,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODTU010000001.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABODTU010000031.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.denovo.31, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABODTU010000031.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.denovo.31, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABODTU010000052.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.denovo.57, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODTU010000052.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.denovo.57, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABODTU010000065.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.guided.56, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODTU010000065.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.guided.56, whole genome shotgun sequence	69..872	Streptomycin	AF321551	aadA2	100	792/792	ABODTU010000069.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.guided.61, whole genome shotgun sequence	279..1070	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	100	438/438	ABODTU010000072.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.guided.65, whole genome shotgun sequence	212..649	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABODTU010000073.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.guided.66, whole genome shotgun sequence	14..805	Spectinomycin, Streptomycin	JQ414041	blaTEM-1B	100	861/861	ABODTU010000049.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.denovo.53, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABODTU010000070.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.guided.62, whole genome shotgun sequence	197..1057	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABODTU010000031.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.denovo.31, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	97.72	1007/1215	ABODTU010000036.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.denovo.37, whole genome shotgun sequence	3278..4284	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABODTU010000064.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.guided.47, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABODTU010000067.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.guided.59, whole genome shotgun sequence	27..1286	Chloramphenicol	M64556	sul2	100	816/816	ABODTU010000074.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.guided.68, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABODTU010000075.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.guided.69, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	99.88	816/816	ABODTU010000076.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.guided.70, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABODTU010000030.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.denovo.30, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABODTU010000031.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.denovo.31, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABODTU010000062.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.guided.38, whole genome shotgun sequence	2599..3804	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABODTU010000063.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.guided.44, whole genome shotgun sequence	873..2792	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABODTU010000031.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.denovo.31, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABODTU010000071.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.guided.64, whole genome shotgun sequence	518..1015	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																													enterobacteriales	Col156	94.81	154 / 154	ABODTU010000035.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.denovo.36, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABODTU010000041.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.denovo.43, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABODTU010000050.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.denovo.54, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABODTU010000029.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.denovo.29, whole genome shotgun sequence	17775..18456		enterobacteriales	IncFIC(FII)	94	500 / 499	ABODTU010000021.1 Salmonella enterica strain PNUSAS393562 SAMN37886665-rid19911843.denovo.21, whole genome shotgun sequence	55745..56241																											avrA	ABODTU010000002.1	508765..509634	99.885	870	0						
GCA_032876755.1_PDT001948336.1_genomic.fna	Salmonella_enterica	0.5213	362.955 KB	5	aroC_13,dnaN_11,hemD_25,hisD_197,purE_12,sucA_71,thrA_4	548	21:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_197	purE	100	100	purE_12	sucA	100	100	sucA_71	thrA	100	100	thrA_4	21	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Minnesota		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODTX010000004.1 Salmonella enterica strain PNUSAS393556 SAMN37886661-rid19910783.denovo.04, whole genome shotgun sequence	37887..38324	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODTX010000033.1 Salmonella enterica strain PNUSAS393556 SAMN37886661-rid19910783.guided.22, whole genome shotgun sequence	16428..16865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODTX010000001.1	552362..553231	99.31	870	0						
GCA_032876775.1_PDT001948335.1_genomic.fna	Salmonella_enterica	0.5209	696.656 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODTW010000001.1 Salmonella enterica strain PNUSAS393609 SAMN37886668-rid19911833.denovo.01, whole genome shotgun sequence	384606..385043	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODTW010000040.1 Salmonella enterica strain PNUSAS393609 SAMN37886668-rid19911833.guided.17, whole genome shotgun sequence	17824..18261	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODTW010000004.1	504164..505034	99.196	871	0						
GCA_032876795.1_PDT001948334.1_genomic.fna	Salmonella_enterica	0.5208	735.199 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODTY010000001.1 Salmonella enterica strain PNUSAS393567 SAMN37886643-rid19911823.denovo.01, whole genome shotgun sequence	596592..597029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODTY010000016.1 Salmonella enterica strain PNUSAS393567 SAMN37886643-rid19911823.guided.11, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODTY010000003.1	544606..545474	99.425	870	0						
GCA_032876815.1_PDT001948333.1_genomic.fna	Salmonella_enterica	0.5217	215.934 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODTZ010000001.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.denovo.01, whole genome shotgun sequence	28262..28699	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABODTZ010000027.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.denovo.27, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABODTZ010000027.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.denovo.27, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABODTZ010000040.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.denovo.41, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABODTZ010000040.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.denovo.41, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABODTZ010000056.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.guided.45, whole genome shotgun sequence	2033..2470	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABODTZ010000061.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.guided.52, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABODTZ010000061.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.guided.52, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABODTZ010000063.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.guided.56, whole genome shotgun sequence	306..1097	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABODTZ010000063.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.guided.56, whole genome shotgun sequence	306..1097	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABODTZ010000043.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.denovo.44, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABODTZ010000062.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.guided.55, whole genome shotgun sequence	284..1159	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABODTZ010000038.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.denovo.38, whole genome shotgun sequence	3326..4539	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABODTZ010000059.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.guided.50, whole genome shotgun sequence	1065..2278	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABODTZ010000027.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.denovo.27, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABODTZ010000057.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.guided.46, whole genome shotgun sequence	362..1201	Sulfamethoxazole	U12338	sul1	100	840/840	ABODTZ010000058.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.guided.47, whole genome shotgun sequence	362..1201	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABODTZ010000027.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.denovo.27, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABODTZ010000055.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.guided.39, whole genome shotgun sequence	706..1905	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABODTZ010000031.1 Salmonella enterica strain PNUSAS393570 SAMN37886662-rid19910773.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABODTZ010000004.1	39575..40444	99.655	870	0						
GCA_032876825.1_PDT001948331.1_genomic.fna	Salmonella_enterica	0.5218	279.425 KB	7	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODUB010000008.1 Salmonella enterica strain PNUSAS393645 SAMN37886623-rid19910763.denovo.08, whole genome shotgun sequence	130419..130856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODUB010000044.1 Salmonella enterica strain PNUSAS393645 SAMN37886623-rid19910763.guided.26, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODUB010000020.1	39348..40216	99.195	870	0						
GCA_032876855.1_PDT001948332.1_genomic.fna	Salmonella_enterica	0.5208	430.47 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODUA010000001.1 Salmonella enterica strain PNUSAS393593 SAMN37886640-rid19911813.denovo.01, whole genome shotgun sequence	422905..423342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODUA010000035.1 Salmonella enterica strain PNUSAS393593 SAMN37886640-rid19911813.guided.18, whole genome shotgun sequence	29786..30223	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODUA010000002.1	504249..505119	99.196	871	0						
GCA_032876875.1_PDT001948330.1_genomic.fna	Salmonella_enterica	0.5222	233.624 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODUC010000003.1 Salmonella enterica strain PNUSAS393579 SAMN37886634-rid19910753.denovo.03, whole genome shotgun sequence	150916..151353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODUC010000046.1 Salmonella enterica strain PNUSAS393579 SAMN37886634-rid19910753.guided.25, whole genome shotgun sequence	16439..16876	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032876895.1_PDT001948329.1_genomic.fna	Salmonella_enterica	0.52	438.72 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODUD010000002.1 Salmonella enterica strain PNUSAS393599 SAMN37886646-rid19911803.denovo.02, whole genome shotgun sequence	477689..478126	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODUD010000055.1 Salmonella enterica strain PNUSAS393599 SAMN37886646-rid19911803.guided.11, whole genome shotgun sequence	44251..44688	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABODUD010000023.1 Salmonella enterica strain PNUSAS393599 SAMN37886646-rid19911803.denovo.26, whole genome shotgun sequence	5955..6597																																																						avrA	ABODUD010000006.1	150097..150966	99.425	870	0						
GCA_032876915.1_PDT001948327.1_genomic.fna	Salmonella_enterica	0.5212	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODUF010000001.1 Salmonella enterica strain PNUSAS393558 SAMN37886619-rid19911793.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODUF010000024.1 Salmonella enterica strain PNUSAS393558 SAMN37886619-rid19911793.guided.20, whole genome shotgun sequence	789..1226	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODUF010000012.1 Salmonella enterica strain PNUSAS393558 SAMN37886619-rid19911793.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABODUF010000016.1 Salmonella enterica strain PNUSAS393558 SAMN37886619-rid19911793.denovo.18, whole genome shotgun sequence	3428..3689																																																avrA	ABODUF010000002.1	553636..554505	99.54	870	0						
GCA_032876935.1_PDT001948328.1_genomic.fna	Salmonella_enterica	0.521	466.01 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODUE010000001.1 Salmonella enterica strain PNUSAS393602 SAMN37886650-rid19910743.denovo.01, whole genome shotgun sequence	384606..385043	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODUE010000041.1 Salmonella enterica strain PNUSAS393602 SAMN37886650-rid19910743.guided.17, whole genome shotgun sequence	19916..20353	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODUE010000008.1	150791..151661	99.196	871	0						
GCA_032876955.1_PDT001948326.1_genomic.fna	Salmonella_enterica	0.5215	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODUG010000001.1 Salmonella enterica strain PNUSAS393595 SAMN37886632-rid19910733.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODUG010000023.1 Salmonella enterica strain PNUSAS393595 SAMN37886632-rid19910733.guided.20, whole genome shotgun sequence	1999..2436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODUG010000012.1 Salmonella enterica strain PNUSAS393595 SAMN37886632-rid19910733.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABODUG010000015.1 Salmonella enterica strain PNUSAS393595 SAMN37886632-rid19910733.denovo.17, whole genome shotgun sequence	3446..3707																																																avrA	ABODUG010000002.1	553642..554511	99.54	870	0						
GCA_032876975.1_PDT001948324.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODUI010000001.1 Salmonella enterica strain PNUSAS393580 SAMN37886647-rid19911773.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODUI010000021.1 Salmonella enterica strain PNUSAS393580 SAMN37886647-rid19911773.guided.14, whole genome shotgun sequence	17481..17918	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODUI010000011.1 Salmonella enterica strain PNUSAS393580 SAMN37886647-rid19911773.denovo.11, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABODUI010000015.1 Salmonella enterica strain PNUSAS393580 SAMN37886647-rid19911773.denovo.18, whole genome shotgun sequence	3395..3656																																																avrA	ABODUI010000002.1	553636..554505	99.54	870	0						
GCA_032876985.1_PDT001948325.1_genomic.fna	Salmonella_enterica	0.5223	397.497 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODUH010000001.1 Salmonella enterica strain PNUSAS393586 SAMN37886635-rid19911783.denovo.01, whole genome shotgun sequence	826107..826544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODUH010000038.1 Salmonella enterica strain PNUSAS393586 SAMN37886635-rid19911783.guided.25, whole genome shotgun sequence	1018..1455	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODUH010000005.1	93999..94868	98.966	870	0						
GCA_032877015.1_PDT001948321.1_genomic.fna	Salmonella_enterica	0.5214	509.061 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODUL010000001.1 Salmonella enterica strain PNUSAS393610 SAMN37886614-rid19910713.denovo.01, whole genome shotgun sequence	584143..584580	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODUL010000037.1 Salmonella enterica strain PNUSAS393610 SAMN37886614-rid19910713.guided.29, whole genome shotgun sequence	71..508	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABODUL010000019.1 Salmonella enterica strain PNUSAS393610 SAMN37886614-rid19910713.denovo.19, whole genome shotgun sequence	11447..12089																																																						avrA	ABODUL010000004.1	93876..94745	99.425	870	0						
GCA_032877025.1_PDT001948322.1_genomic.fna	Salmonella_enterica	0.5217	405.262 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODUK010000001.1 Salmonella enterica strain PNUSAS393581 SAMN37886653-rid19911763.denovo.01, whole genome shotgun sequence	406860..407297	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODUK010000036.1 Salmonella enterica strain PNUSAS393581 SAMN37886653-rid19911763.guided.29, whole genome shotgun sequence	352..789	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODUK010000011.1	93874..94742	99.195	870	0						
GCA_032877055.1_PDT001948323.1_genomic.fna	Salmonella_enterica	0.5218	343.797 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODUJ010000001.1 Salmonella enterica strain PNUSAS393577 SAMN37886625-rid19910723.denovo.01, whole genome shotgun sequence	169975..170412	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODUJ010000036.1 Salmonella enterica strain PNUSAS393577 SAMN37886625-rid19910723.guided.14, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032877075.1_PDT001948319.1_genomic.fna	Salmonella_enterica	0.5207	258.835 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODUM010000002.1 Salmonella enterica strain PNUSAS393644 SAMN37886628-rid19911743.denovo.02, whole genome shotgun sequence	383528..383965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODUM010000069.1 Salmonella enterica strain PNUSAS393644 SAMN37886628-rid19911743.guided.31, whole genome shotgun sequence	4797..5234	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODUM010000010.1	150747..151617	99.196	871	0						
GCA_032877085.1_PDT001948320.1_genomic.fna	Salmonella_enterica	0.5225	332.709 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODUN010000001.1 Salmonella enterica strain PNUSAS393605 SAMN37886613-rid19911753.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODUN010000037.1 Salmonella enterica strain PNUSAS393605 SAMN37886613-rid19911753.guided.15, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032877115.1_PDT001948317.1_genomic.fna	Salmonella_enterica	0.5209	656.002 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODUP010000001.1 Salmonella enterica strain PNUSAS393597 SAMN37886629-rid19911733.denovo.01, whole genome shotgun sequence	383224..383661	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODUP010000034.1 Salmonella enterica strain PNUSAS393597 SAMN37886629-rid19911733.guided.15, whole genome shotgun sequence	16112..16549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODUP010000003.1	504340..505210	99.196	871	0						
GCA_032877135.1_PDT001948316.1_genomic.fna	Salmonella_enterica	0.5212	418.211 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABODUQ010000001.1 Salmonella enterica strain PNUSAS393571 SAMN37886622-rid19910693.denovo.01, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABODUQ010000042.1 Salmonella enterica strain PNUSAS393571 SAMN37886622-rid19910693.guided.27, whole genome shotgun sequence	2897..3334	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODUQ010000011.1	101941..102810	99.655	870	0						
GCA_032877155.1_PDT001948318.1_genomic.fna	Salmonella_enterica	0.5212	489.854 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODUO010000001.1 Salmonella enterica strain PNUSAS393592 SAMN37886652-rid19910703.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODUO010000023.1 Salmonella enterica strain PNUSAS393592 SAMN37886652-rid19910703.guided.12, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODUO010000012.1 Salmonella enterica strain PNUSAS393592 SAMN37886652-rid19910703.denovo.13, whole genome shotgun sequence	18163..18805	enterobacteriales	IncFII(S)	100	262 / 262	ABODUO010000012.1 Salmonella enterica strain PNUSAS393592 SAMN37886652-rid19910703.denovo.13, whole genome shotgun sequence	3425..3686																																																avrA	ABODUO010000002.1	553181..554050	99.54	870	0						
GCA_032877175.1_PDT001948315.1_genomic.fna	Salmonella_enterica	0.5213	323.052 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODUS010000003.1 Salmonella enterica strain PNUSAS393566 SAMN37886641-rid19911723.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODUS010000040.1 Salmonella enterica strain PNUSAS393566 SAMN37886641-rid19911723.guided.32, whole genome shotgun sequence	170..607	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABODUS010000016.1 Salmonella enterica strain PNUSAS393566 SAMN37886641-rid19911723.denovo.16, whole genome shotgun sequence	48399..49041	enterobacteriales	IncFII(S)	100	262 / 262	ABODUS010000016.1 Salmonella enterica strain PNUSAS393566 SAMN37886641-rid19911723.denovo.16, whole genome shotgun sequence	64126..64387																																																avrA	ABODUS010000001.1	446733..447601	100	869	0						
GCA_032877195.1_PDT001948314.1_genomic.fna	Salmonella_enterica	0.5211	180.447 KB	10	aroC_41,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	2129	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODUR010000001.1 Salmonella enterica strain PNUSAS393594 SAMN37886637-rid19911713.denovo.01, whole genome shotgun sequence	370708..371145	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODUR010000061.1 Salmonella enterica strain PNUSAS393594 SAMN37886637-rid19911713.guided.26, whole genome shotgun sequence	29555..29992	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABODUR010000024.1 Salmonella enterica strain PNUSAS393594 SAMN37886637-rid19911713.denovo.24, whole genome shotgun sequence	70683..70824																																																																	
GCA_032877215.1_PDT001948311.1_genomic.fna	Salmonella_enterica	0.5207	411.276 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODUT010000001.1 Salmonella enterica strain PNUSAS393559 SAMN37886644-rid19910673.denovo.01, whole genome shotgun sequence	477428..477865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODUT010000041.1 Salmonella enterica strain PNUSAS393559 SAMN37886644-rid19910673.guided.15, whole genome shotgun sequence	32209..32646	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODUT010000010.1	150792..151662	99.196	871	0						
GCA_032877235.1_PDT001948313.1_genomic.fna	Salmonella_enterica	0.5213	279.77 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA1,aadA2,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cml,floR,cmlA1,cmlA1,sul2,sul2,sul2,sul2,tet(M),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODUU010000001.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABODUU010000032.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.denovo.32, whole genome shotgun sequence	7085..7876	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABODUU010000032.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.denovo.32, whole genome shotgun sequence	4680..5471	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABODUU010000049.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.denovo.58, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODUU010000049.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.denovo.58, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABODUU010000060.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.guided.34, whole genome shotgun sequence	4936..5373	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABODUU010000061.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.guided.37, whole genome shotgun sequence	1136..1927	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABODUU010000063.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.guided.47, whole genome shotgun sequence	1940..2731	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	837/837	ABODUU010000068.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.guided.57, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODUU010000068.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.guided.57, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABODUU010000047.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.denovo.55, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABODUU010000069.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.guided.59, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABODUU010000032.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.denovo.32, whole genome shotgun sequence	5564..6823	Chloramphenicol	M64556	floR	98.11	1214/1215	ABODUU010000042.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.denovo.45, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	cml	96.66	929/909	ABODUU010000061.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.guided.37, whole genome shotgun sequence	196..1117	Chloramphenicol	M22614	floR	98.11	1214/1215	ABODUU010000065.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.guided.50, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.84	1260/1260	ABODUU010000066.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.guided.51, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABODUU010000067.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.guided.52, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	sul2	100	816/816	ABODUU010000071.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.guided.63, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABODUU010000072.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.guided.64, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABODUU010000073.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.guided.65, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABODUU010000074.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.guided.66, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(M)	96.15	1920/1920	ABODUU010000032.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.denovo.32, whole genome shotgun sequence	833..2752	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABODUU010000062.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.guided.39, whole genome shotgun sequence	619..2538	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABODUU010000032.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.denovo.32, whole genome shotgun sequence	8284..8781	Trimethoprim	AM040708	dfrA12	100	498/498	ABODUU010000063.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.guided.47, whole genome shotgun sequence	1035..1532	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																						enterobacteriales	Col156	94.81	154 / 154	ABODUU010000034.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.denovo.35, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABODUU010000044.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.denovo.48, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABODUU010000048.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.denovo.56, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABODUU010000028.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.denovo.28, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABODUU010000020.1 Salmonella enterica strain PNUSAS393590 SAMN37886638-rid19910683.denovo.20, whole genome shotgun sequence	55745..56241																											avrA	ABODUU010000002.1	508649..509518	99.885	870	0						
GCA_032877255.1_PDT001948312.1_genomic.fna	Salmonella_enterica	0.52	455.237 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODUV010000001.1 Salmonella enterica strain PNUSAS393555 SAMN37886608-rid19911703.denovo.01, whole genome shotgun sequence	510822..511259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODUV010000045.1 Salmonella enterica strain PNUSAS393555 SAMN37886608-rid19911703.guided.15, whole genome shotgun sequence	24292..24729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	100	316 / 316	ABODUV010000014.1 Salmonella enterica strain PNUSAS393555 SAMN37886608-rid19911703.denovo.16, whole genome shotgun sequence	28401..28716																																																						avrA	ABODUV010000003.1	394976..395844	99.425	870	0						
GCA_032877275.1_PDT001948310.1_genomic.fna	Salmonella_enterica	0.5203	735.898 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODUW010000004.1 Salmonella enterica strain PNUSAS393588 SAMN37886649-rid19911693.denovo.04, whole genome shotgun sequence	80667..81104	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODUW010000035.1 Salmonella enterica strain PNUSAS393588 SAMN37886649-rid19911693.guided.19, whole genome shotgun sequence	5040..5477	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABODUW010000016.1 Salmonella enterica strain PNUSAS393588 SAMN37886649-rid19911693.denovo.16, whole genome shotgun sequence	11459..12101																																																						avrA	ABODUW010000002.1	669979..670848	99.425	870	0						
GCA_032877295.1_PDT001948309.1_genomic.fna	Salmonella_enterica	0.5222	259.546 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODUX010000001.1 Salmonella enterica strain PNUSAS393635 SAMN37886631-rid19911683.denovo.01, whole genome shotgun sequence	558168..558605	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODUX010000036.1 Salmonella enterica strain PNUSAS393635 SAMN37886631-rid19911683.guided.25, whole genome shotgun sequence	32283..32720	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODUX010000007.1	181738..182606	99.195	870	0						
GCA_032877315.1_PDT001948308.1_genomic.fna	Salmonella_enterica	0.5205	266.944 KB	6	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABODUY010000002.1 Salmonella enterica strain PNUSAS393632 SAMN37886620-rid19911673.denovo.02, whole genome shotgun sequence	382620..383057	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABODUY010000036.1 Salmonella enterica strain PNUSAS393632 SAMN37886620-rid19911673.guided.29, whole genome shotgun sequence	385..822	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABODUY010000008.1 Salmonella enterica strain PNUSAS393632 SAMN37886620-rid19911673.denovo.08, whole genome shotgun sequence	166241..166663	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABODUY010000034.1 Salmonella enterica strain PNUSAS393632 SAMN37886620-rid19911673.guided.26, whole genome shotgun sequence	27975..28397	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.93	374 / 374	ABODUY010000023.1 Salmonella enterica strain PNUSAS393632 SAMN37886620-rid19911673.denovo.23, whole genome shotgun sequence	6868..7241																																																						avrA	ABODUY010000001.1	517791..518660	99.54	870	0						
GCA_032877335.1_PDT001948307.1_genomic.fna	Salmonella_enterica	0.5215	682.779 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODUZ010000001.1 Salmonella enterica strain PNUSAS393587 SAMN37886617-rid19911663.denovo.01, whole genome shotgun sequence	510736..511173	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODUZ010000026.1 Salmonella enterica strain PNUSAS393587 SAMN37886617-rid19911663.guided.25, whole genome shotgun sequence	2..439	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODUZ010000004.1	544607..545475	99.425	870	0						
GCA_032877355.1_PDT001948305.1_genomic.fna	Salmonella_enterica	0.5198	254.413 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODVD010000002.1 Salmonella enterica strain PNUSAS393633 SAMN37886600-rid19911653.denovo.02, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODVD010000065.1 Salmonella enterica strain PNUSAS393633 SAMN37886600-rid19911653.guided.22, whole genome shotgun sequence	44301..44738	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032877375.1_PDT001948306.1_genomic.fna	Salmonella_enterica	0.5216	212.025 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODVA010000001.1 Salmonella enterica strain PNUSAS393634 SAMN37886611-rid19910663.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODVA010000071.1 Salmonella enterica strain PNUSAS393634 SAMN37886611-rid19910663.guided.20, whole genome shotgun sequence	30298..30735	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABODVA010000043.1 Salmonella enterica strain PNUSAS393634 SAMN37886611-rid19910663.denovo.46, whole genome shotgun sequence	594..1236	enterobacteriales	IncFII(S)	100	262 / 262	ABODVA010000046.1 Salmonella enterica strain PNUSAS393634 SAMN37886611-rid19910663.denovo.49, whole genome shotgun sequence	3420..3681																																																avrA	ABODVA010000002.1	155205..156073	100	869	0						
GCA_032877395.1_PDT001948304.1_genomic.fna	Salmonella_enterica	0.5216	223.095 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODVC010000005.1 Salmonella enterica strain PNUSAS393637 SAMN37886616-rid19911643.denovo.05, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODVC010000098.1 Salmonella enterica strain PNUSAS393637 SAMN37886616-rid19911643.guided.40, whole genome shotgun sequence	12138..12575	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABODVC010000045.1 Salmonella enterica strain PNUSAS393637 SAMN37886616-rid19911643.denovo.48, whole genome shotgun sequence	2222..2864	enterobacteriales	IncFII(S)	100	262 / 262	ABODVC010000049.1 Salmonella enterica strain PNUSAS393637 SAMN37886616-rid19911643.denovo.52, whole genome shotgun sequence	2413..2674																																																avrA	ABODVC010000007.1	94139..95007	100	869	0						
GCA_032877415.1_PDT001948303.1_genomic.fna	Salmonella_enterica	0.5226	243.948 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODVB010000001.1 Salmonella enterica strain PNUSAS393641 SAMN37886597-rid19910653.denovo.01, whole genome shotgun sequence	582329..582766	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODVB010000037.1 Salmonella enterica strain PNUSAS393641 SAMN37886597-rid19910653.guided.28, whole genome shotgun sequence	8924..9361	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODVB010000007.1	39430..40299	99.655	870	0						
GCA_032877435.1_PDT001948302.1_genomic.fna	Salmonella_enterica	0.5213	296.949 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODVE010000001.1 Salmonella enterica strain PNUSAS393636 SAMN37886602-rid19911633.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODVE010000048.1 Salmonella enterica strain PNUSAS393636 SAMN37886602-rid19911633.guided.19, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	262 / 262	ABODVE010000027.1 Salmonella enterica strain PNUSAS393636 SAMN37886602-rid19911633.denovo.29, whole genome shotgun sequence	2033..2294																																																						avrA	ABODVE010000002.1	552776..553645	99.54	870	0						
GCA_032877455.1_PDT001948300.1_genomic.fna	Salmonella_enterica	0.52	485.854 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODVG010000001.1 Salmonella enterica strain PNUSAS393601 SAMN37886610-rid19910633.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODVG010000047.1 Salmonella enterica strain PNUSAS393601 SAMN37886610-rid19910633.guided.18, whole genome shotgun sequence	32170..32607	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	98.59	142 / 142	ABODVG010000012.1 Salmonella enterica strain PNUSAS393601 SAMN37886610-rid19910633.denovo.12, whole genome shotgun sequence	66619..66760																																																						avrA	ABODVG010000003.1	504146..505016	99.196	871	0						
GCA_032877475.1_PDT001948301.1_genomic.fna	Salmonella_enterica	0.5212	189.533 KB	8	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODVF010000007.1 Salmonella enterica strain PNUSAS393639 SAMN37886598-rid19910643.denovo.07, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODVF010000056.1 Salmonella enterica strain PNUSAS393639 SAMN37886598-rid19910643.guided.35, whole genome shotgun sequence	8806..9243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODVF010000002.1	39349..40217	99.31	870	0						
GCA_032877495.1_PDT001948299.1_genomic.fna	Salmonella_enterica	0.5209	376.533 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODVH010000002.1 Salmonella enterica strain PNUSAS393565 SAMN37886626-rid19910623.denovo.02, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODVH010000037.1 Salmonella enterica strain PNUSAS393565 SAMN37886626-rid19910623.guided.22, whole genome shotgun sequence	5412..5849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODVH010000001.1	452675..453543	100	869	0						
GCA_032877515.1_PDT001948298.1_genomic.fna	Salmonella_enterica	0.5212	370.774 KB	5	aroC_41,dnaN_42,hemD_299,hisD_58,purE_9,sucA_12,thrA_2	1606	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_299	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODVK010000002.1 Salmonella enterica strain PNUSAS393576 SAMN37886604-rid19910613.denovo.02, whole genome shotgun sequence	581838..582275	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODVK010000055.1 Salmonella enterica strain PNUSAS393576 SAMN37886604-rid19910613.guided.32, whole genome shotgun sequence	2000..2437	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABODVK010000024.1 Salmonella enterica strain PNUSAS393576 SAMN37886604-rid19910613.denovo.24, whole genome shotgun sequence	11451..12093																																																						avrA	ABODVK010000001.1	676289..677157	99.31	870	0						
GCA_032877535.1_PDT001948296.1_genomic.fna	Salmonella_enterica	0.5228	397.497 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODVI010000001.1 Salmonella enterica strain PNUSAS393554 SAMN37886601-rid19910593.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODVI010000035.1 Salmonella enterica strain PNUSAS393554 SAMN37886601-rid19910593.guided.19, whole genome shotgun sequence	3034..3471	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODVI010000007.1	94986..95855	98.851	870	0						
GCA_032877555.1_PDT001948297.1_genomic.fna	Salmonella_enterica	0.5211	436.26 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABODVL010000001.1 Salmonella enterica strain PNUSAS393578 SAMN37886607-rid19910603.denovo.01, whole genome shotgun sequence	669035..669472	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABODVL010000042.1 Salmonella enterica strain PNUSAS393578 SAMN37886607-rid19910603.guided.25, whole genome shotgun sequence	2246..2683	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABODVL010000020.1 Salmonella enterica strain PNUSAS393578 SAMN37886607-rid19910603.denovo.21, whole genome shotgun sequence	6285..6927	enterobacteriales	IncFII(Yp)	92.64	231 / 230	ABODVL010000014.1 Salmonella enterica strain PNUSAS393578 SAMN37886607-rid19910603.denovo.14, whole genome shotgun sequence	2926..3154																																																avrA	ABODVL010000005.1	140592..141461	99.425	870	0						
GCA_032877575.1_PDT001948295.1_genomic.fna	Salmonella_enterica	0.5221	207.457 KB	9	aroC_48,dnaN_128*,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448*	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	99.8003992015968	100	dnaN_128*	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODVJ010000009.1 Salmonella enterica strain PNUSAS393557 SAMN37886605-rid19910583.denovo.09, whole genome shotgun sequence	144280..144717	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODVJ010000047.1 Salmonella enterica strain PNUSAS393557 SAMN37886605-rid19910583.guided.35, whole genome shotgun sequence	3057..3494	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032877815.1_PDT001948276.1_genomic.fna	Salmonella_enterica	0.5218	396.732 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODWA010000001.1 Salmonella enterica strain PNUSAS393617 SAMN37886125-rid19910393.denovo.01, whole genome shotgun sequence	601638..602075	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODWA010000026.1 Salmonella enterica strain PNUSAS393617 SAMN37886125-rid19910393.guided.21, whole genome shotgun sequence	3931..4368	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODWA010000011.1	139904..140772	99.195	870	0						
GCA_032877875.1_PDT001948275.1_genomic.fna	Salmonella_enterica	0.5223	299.339 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODVZ010000005.1 Salmonella enterica strain PNUSAS393613 SAMN37886128-rid19910383.denovo.05, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODVZ010000032.1 Salmonella enterica strain PNUSAS393613 SAMN37886128-rid19910383.guided.23, whole genome shotgun sequence	7561..7998	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODVZ010000002.1	39475..40344	98.966	870	0						
GCA_032877895.1_PDT001948274.1_genomic.fna	Salmonella_enterica	0.5216	366.958 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODWB010000001.1 Salmonella enterica strain PNUSAS393616 SAMN37886124-rid19910373.denovo.01, whole genome shotgun sequence	477378..477815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODWB010000034.1 Salmonella enterica strain PNUSAS393616 SAMN37886124-rid19910373.guided.25, whole genome shotgun sequence	12202..12639	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODWB010000017.1	39462..40330	99.195	870	0						
GCA_032877915.1_PDT001948273.1_genomic.fna	Salmonella_enterica	0.521	227.385 KB	7	aroC_18,dnaN_14,hemD_12,hisD_9,purE_5,sucA_18,thrA_21	36	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_14	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_18	thrA	100	100	thrA_21	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODWC010000004.1 Salmonella enterica strain PNUSAS393614 SAMN37886129-rid19910363.denovo.04, whole genome shotgun sequence	145287..145724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODWC010000058.1 Salmonella enterica strain PNUSAS393614 SAMN37886129-rid19910363.guided.34, whole genome shotgun sequence	506..943	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODWC010000005.1	39478..40347	99.885	870	0						
GCA_032877935.1_PDT001948271.1_genomic.fna	Salmonella_enterica	0.521	189.523 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODWE010000002.1 Salmonella enterica strain PNUSAS393618 SAMN37886126-rid19910343.denovo.02, whole genome shotgun sequence	64041..64478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABODWE010000060.1 Salmonella enterica strain PNUSAS393618 SAMN37886126-rid19910343.guided.31, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABODWE010000015.1 Salmonella enterica strain PNUSAS393618 SAMN37886126-rid19910343.denovo.15, whole genome shotgun sequence	108796..109438																																																																	
GCA_032877955.1_PDT001948272.1_genomic.fna	Salmonella_enterica	0.5211	196.356 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODWD010000001.1 Salmonella enterica strain PNUSAS393615 SAMN37886123-rid19910353.denovo.01, whole genome shotgun sequence	145360..145797	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABODWD010000059.1 Salmonella enterica strain PNUSAS393615 SAMN37886123-rid19910353.denovo.66, whole genome shotgun sequence	17..796	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABODWD010000066.1 Salmonella enterica strain PNUSAS393615 SAMN37886123-rid19910353.guided.41, whole genome shotgun sequence	9249..9686	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABODWD010000071.1 Salmonella enterica strain PNUSAS393615 SAMN37886123-rid19910353.guided.64, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABODWD010000057.1 Salmonella enterica strain PNUSAS393615 SAMN37886123-rid19910353.denovo.63, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABODWD010000070.1 Salmonella enterica strain PNUSAS393615 SAMN37886123-rid19910353.guided.61, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABODWD010000043.1 Salmonella enterica strain PNUSAS393615 SAMN37886123-rid19910353.denovo.45, whole genome shotgun sequence	5127..6341	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABODWD010000067.1 Salmonella enterica strain PNUSAS393615 SAMN37886123-rid19910353.guided.46, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABODWD010000068.1 Salmonella enterica strain PNUSAS393615 SAMN37886123-rid19910353.guided.54, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABODWD010000043.1 Salmonella enterica strain PNUSAS393615 SAMN37886123-rid19910353.denovo.45, whole genome shotgun sequence	3015..4190	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABODWD010000067.1 Salmonella enterica strain PNUSAS393615 SAMN37886123-rid19910353.guided.46, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	IncFIB(S)	100	643 / 643	ABODWD010000020.1 Salmonella enterica strain PNUSAS393615 SAMN37886123-rid19910353.denovo.20, whole genome shotgun sequence	44691..45333	enterobacteriales	IncFII(S)	100	262 / 262	ABODWD010000020.1 Salmonella enterica strain PNUSAS393615 SAMN37886123-rid19910353.denovo.20, whole genome shotgun sequence	60418..60679																																																avrA	ABODWD010000002.1	401585..402454	99.885	870	0						
GCA_032877975.1_PDT001948270.1_genomic.fna	Salmonella_enterica	0.5204	388.337 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODWF010000001.1 Salmonella enterica strain PNUSAS393612 SAMN37886127-rid19910333.denovo.01, whole genome shotgun sequence	561834..562271	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODWF010000034.1 Salmonella enterica strain PNUSAS393612 SAMN37886127-rid19910333.guided.17, whole genome shotgun sequence	32548..32985	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODWF010000011.1	94911..95779	99.195	870	0						
GCA_032878155.1_PDT001948233.1_genomic.fna	Salmonella_enterica	0.5217	503.743 KB	4	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_746	3848	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_746	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABODWO010000001.1 Salmonella enterica strain PNUSAS393552 SAMN37885302-rid19909973.denovo.01, whole genome shotgun sequence	243591..244028	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABODWO010000031.1 Salmonella enterica strain PNUSAS393552 SAMN37885302-rid19909973.guided.20, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABODWO010000016.1 Salmonella enterica strain PNUSAS393552 SAMN37885302-rid19909973.denovo.16, whole genome shotgun sequence	34959..35492																																																						avrA	ABODWO010000003.1	509240..510109	99.54	870	0						
GCA_032878195.1_PDT001948190.1_genomic.fna	Salmonella_enterica	0.5201	477.448 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODWS010000001.1 Salmonella enterica strain PNUSAS393522 SAMN37884549-rid19909593.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODWS010000025.1 Salmonella enterica strain PNUSAS393522 SAMN37884549-rid19909593.guided.14, whole genome shotgun sequence	32242..32679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABODWS010000013.1 Salmonella enterica strain PNUSAS393522 SAMN37884549-rid19909593.denovo.15, whole genome shotgun sequence	32011..32384																																																						avrA	ABODWS010000008.1	175109..175978	99.54	870	0						
GCA_032878255.1_PDT001948140.1_genomic.fna	Salmonella_enterica	0.5209	639.917 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODWT010000001.1 Salmonella enterica strain PNUSAS393254 SAMN37883846-rid19909103.denovo.01, whole genome shotgun sequence	510631..511068	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODWT010000025.1 Salmonella enterica strain PNUSAS393254 SAMN37883846-rid19909103.guided.24, whole genome shotgun sequence	310..747	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABODWT010000011.1 Salmonella enterica strain PNUSAS393254 SAMN37883846-rid19909103.denovo.11, whole genome shotgun sequence	34957..35490																																																						avrA	ABODWT010000003.1	544690..545558	99.425	870	0						
GCA_032879725.1_PDT001778356.1_genomic.fna	Salmonella_enterica	0.5211	478.496 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODXO010000001.1 Salmonella enterica strain PNUSAS355718 SAMN35724345-rid18380593.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODXO010000028.1 Salmonella enterica strain PNUSAS355718 SAMN35724345-rid18380593.guided.20, whole genome shotgun sequence	10576..11013	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODXO010000019.1 Salmonella enterica strain PNUSAS355718 SAMN35724345-rid18380593.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABODXO010000016.1 Salmonella enterica strain PNUSAS355718 SAMN35724345-rid18380593.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABODXO010000002.1	553077..553946	99.54	870	0						
GCA_032879785.1_PDT001778355.1_genomic.fna	Salmonella_enterica	0.5165	133.302 KB	11	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	4	IncHI2,IncHI2A,IncI1-I(Alpha),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODXP010000020.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.denovo.020, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODXP010000067.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.denovo.071, whole genome shotgun sequence	4185..5021	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABODXP010000067.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.denovo.071, whole genome shotgun sequence	5021..5823	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABODXP010000067.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.denovo.071, whole genome shotgun sequence	5021..5824	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABODXP010000067.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.denovo.071, whole genome shotgun sequence	5021..5824	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABODXP010000067.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.denovo.071, whole genome shotgun sequence	5021..5824	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABODXP010000137.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.guided.070, whole genome shotgun sequence	2356..3192	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABODXP010000137.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.guided.070, whole genome shotgun sequence	1554..2356	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABODXP010000137.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.guided.070, whole genome shotgun sequence	1553..2356	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABODXP010000137.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.guided.070, whole genome shotgun sequence	1553..2356	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABODXP010000137.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.guided.070, whole genome shotgun sequence	1553..2356	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABODXP010000138.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.guided.091, whole genome shotgun sequence	1814..2251	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABODXP010000045.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.denovo.045, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABODXP010000135.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.guided.060, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABODXP010000031.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.denovo.031, whole genome shotgun sequence	28958..29284	enterobacteriales	IncHI2A	99.52	630 / 630	ABODXP010000031.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.denovo.031, whole genome shotgun sequence	47268..47897		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABODXP010000045.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.denovo.045, whole genome shotgun sequence	8878..9019		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABODXP010000135.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.guided.060, whole genome shotgun sequence	3169..3310		enterobacteriales	IncX1	100	373 / 373	ABODXP010000074.1 Salmonella enterica strain 23NM05CG01-S1 isolate PNUSAS355713 SAMN35724350-rid18380583.denovo.078, whole genome shotgun sequence	2218..2590																											avrA	ABODXP010000032.1	39489..40358	99.655	870	0						
GCA_032879805.1_PDT001778352.1_genomic.fna	Salmonella_enterica	0.5213	400.789 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABODXR010000001.1 Salmonella enterica strain PNUSAS355716 SAMN35724347-rid18380553.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABODXR010000028.1 Salmonella enterica strain PNUSAS355716 SAMN35724347-rid18380553.guided.17, whole genome shotgun sequence	42500..42937	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABODXR010000020.1 Salmonella enterica strain PNUSAS355716 SAMN35724347-rid18380553.denovo.22, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABODXR010000022.1 Salmonella enterica strain PNUSAS355716 SAMN35724347-rid18380553.denovo.25, whole genome shotgun sequence	3423..3684																																																avrA	ABODXR010000002.1	553293..554162	99.54	870	0						
GCA_032879865.1_PDT001778349.1_genomic.fna	Salmonella_enterica	0.5222	442.484 KB	4	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODXV010000001.1 Salmonella enterica strain PNUSAS355715 SAMN35724348-rid18380523.denovo.01, whole genome shotgun sequence	174737..175174	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABODXV010000025.1 Salmonella enterica strain PNUSAS355715 SAMN35724348-rid18380523.guided.18, whole genome shotgun sequence	17886..18323	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODXV010000003.1	507835..508704	99.77	870	0						
GCA_032879905.1_PDT001778347.1_genomic.fna	Salmonella_enterica	0.5204	430.726 KB	5	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODXW010000001.1 Salmonella enterica strain PNUSAS355717 SAMN35724349-rid18380503.denovo.01, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODXW010000034.1 Salmonella enterica strain PNUSAS355717 SAMN35724349-rid18380503.guided.24, whole genome shotgun sequence	12460..12897	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032879925.1_PDT001778350.1_genomic.fna	Salmonella_enterica	0.5132	141.841 KB	9	aroC_65,dnaN_143,hemD_29,hisD_618,purE_20,sucA_26,thrA_60	2257	48:g,z51:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_65	dnaN	100	100	dnaN_143	hemD	100	100	hemD_29	hisD	100	100	hisD_618	purE	100	100	purE_20	sucA	100	100	sucA_26	thrA	100	100	thrA_60	48	g,z51	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 48:g,z51:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032880025.1_PDT001778342.1_genomic.fna	Salmonella_enterica	0.5212	110.445 KB	14	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODYB010000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-ON-ON-0037 SAMN35724178-rid18380453.denovo.026, whole genome shotgun sequence	12438..12875	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABODYB010000090.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-ON-ON-0037 SAMN35724178-rid18380453.denovo.098, whole genome shotgun sequence	17..796	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABODYB010000102.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-ON-ON-0037 SAMN35724178-rid18380453.guided.085, whole genome shotgun sequence	701..1138	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABODYB010000104.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-ON-ON-0037 SAMN35724178-rid18380453.guided.094, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABODYB010000083.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-ON-ON-0037 SAMN35724178-rid18380453.denovo.089, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABODYB010000103.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-ON-ON-0037 SAMN35724178-rid18380453.guided.090, whole genome shotgun sequence	20..886	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	99.92	1215/1215	ABODYB010000070.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-ON-ON-0037 SAMN35724178-rid18380453.denovo.070, whole genome shotgun sequence	5127..6341	Chloramphenicol, Florfenicol	AF118107	floR	99.92	1215/1215	ABODYB010000099.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-ON-ON-0037 SAMN35724178-rid18380453.guided.079, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABODYB010000098.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-ON-ON-0037 SAMN35724178-rid18380453.guided.078, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABODYB010000070.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-ON-ON-0037 SAMN35724178-rid18380453.denovo.070, whole genome shotgun sequence	3015..4190	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABODYB010000097.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-ON-ON-0037 SAMN35724178-rid18380453.guided.075, whole genome shotgun sequence	817..1992	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	IncFIB(S)	100	643 / 643	ABODYB010000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-ON-ON-0037 SAMN35724178-rid18380453.denovo.018, whole genome shotgun sequence	48463..49105	enterobacteriales	IncFII(S)	100	262 / 262	ABODYB010000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAL-22-VL-ON-ON-0037 SAMN35724178-rid18380453.denovo.018, whole genome shotgun sequence	64190..64451																																																avrA	ABODYB010000001.1	121680..122549	99.885	870	0						
GCA_032880045.1_PDT001948649.1_genomic.fna	Salmonella_enterica	0.5212	338.682 KB	6	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODYD010000001.1 Salmonella enterica strain PNUSAS393725 SAMN37898850-rid19914113.denovo.01, whole genome shotgun sequence	149592..150029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODYD010000025.1 Salmonella enterica strain PNUSAS393725 SAMN37898850-rid19914113.guided.18, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032880065.1_PDT001778341.1_genomic.fna	Salmonella_enterica	0.5213	337.839 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODYC010000002.1 Salmonella enterica subsp. enterica serovar Mbandaka strain SAL-22-VL-ON-ON-0038 SAMN35724179-rid18380443.denovo.02, whole genome shotgun sequence	342702..343139	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODYC010000038.1 Salmonella enterica subsp. enterica serovar Mbandaka strain SAL-22-VL-ON-ON-0038 SAMN35724179-rid18380443.guided.20, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODYC010000001.1	583092..583961	99.195	870	0						
GCA_032880085.1_PDT001948645.1_genomic.fna	Salmonella_enterica	0.5212	454.361 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODYF010000001.1 Salmonella enterica strain PNUSAS393789 SAMN37898907-rid19914073.denovo.01, whole genome shotgun sequence	594409..594846	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODYF010000028.1 Salmonella enterica strain PNUSAS393789 SAMN37898907-rid19914073.guided.16, whole genome shotgun sequence	21999..22436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODYF010000003.1	544150..545018	99.425	870	0						
GCA_032880105.1_PDT001948644.1_genomic.fna	Salmonella_enterica	0.5212	695.91 KB	2	aroC_13,dnaN_11,hemD_315,hisD_15,purE_12,sucA_15,thrA_4	1675	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_315	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODYE010000001.1 Salmonella enterica strain PNUSAS393739 SAMN37898904-rid19914063.denovo.01, whole genome shotgun sequence	414642..415079	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODYE010000019.1 Salmonella enterica strain PNUSAS393739 SAMN37898904-rid19914063.guided.15, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032880125.1_PDT001948639.1_genomic.fna	Salmonella_enterica	0.5222	516.467 KB	3	aroC_543,dnaN_69,hemD_101,hisD_12,purE_370,sucA_130,thrA_347	2553	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_543	dnaN	100	100	dnaN_69	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_370	sucA	100	100	sucA_130	thrA	100	100	thrA_347	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABODYG010000001.1 Salmonella enterica strain PNUSAS393745 SAMN37898891-rid19914013.denovo.01, whole genome shotgun sequence	470297..470734	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABODYG010000028.1 Salmonella enterica strain PNUSAS393745 SAMN37898891-rid19914013.guided.19, whole genome shotgun sequence	23732..24169	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODYG010000002.1	514040..514909	99.31	870	0						
GCA_032880145.1_PDT001948621.1_genomic.fna	Salmonella_enterica	0.5211	385.802 KB	4	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABODYH010000001.1 Salmonella enterica strain PNUSAS393787 SAMN37898858-rid19913833.denovo.01, whole genome shotgun sequence	349514..349951	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABODYH010000026.1 Salmonella enterica strain PNUSAS393787 SAMN37898858-rid19913833.guided.19, whole genome shotgun sequence	12733..13170	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODYH010000003.1	94142..95011	99.54	870	0						
GCA_032880165.1_PDT001948611.1_genomic.fna	Salmonella_enterica	0.5213	762.327 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODYI010000001.1 Salmonella enterica strain PNUSAS393736 SAMN37898845-rid19913733.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABODYI010000030.1 Salmonella enterica strain PNUSAS393736 SAMN37898845-rid19913733.guided.18, whole genome shotgun sequence	4816..5253	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODYI010000005.1	401366..402235	99.77	870	0						
GCA_032880185.1_PDT001948607.1_genomic.fna	Salmonella_enterica	0.522	416.805 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODYJ010000001.1 Salmonella enterica strain PNUSAS393796 SAMN37898854-rid19913693.denovo.01, whole genome shotgun sequence	790294..790731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODYJ010000033.1 Salmonella enterica strain PNUSAS393796 SAMN37898854-rid19913693.guided.21, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABODYJ010000012.1 Salmonella enterica strain PNUSAS393796 SAMN37898854-rid19913693.denovo.12, whole genome shotgun sequence	75539..75680																																																						avrA	ABODYJ010000002.1	28833..29702	98.966	870	0						
GCA_032880205.1_PDT001948603.1_genomic.fna	Salmonella_enterica	0.5223	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODYK010000001.1 Salmonella enterica strain PNUSAS393805 SAMN37898833-rid19913653.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABODYK010000027.1 Salmonella enterica strain PNUSAS393805 SAMN37898833-rid19913653.guided.20, whole genome shotgun sequence	13387..13824	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODYK010000002.1	157093..157962	98.966	870	0						
GCA_032880225.1_PDT001948605.1_genomic.fna	Salmonella_enterica	0.5214	394.619 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABODYL010000005.1 Salmonella enterica strain PNUSAS393804 SAMN37898836-rid19913673.denovo.05, whole genome shotgun sequence	255295..255732	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABODYL010000025.1 Salmonella enterica strain PNUSAS393804 SAMN37898836-rid19913673.guided.19, whole genome shotgun sequence	11085..11522	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABODYL010000002.1	557750..558618	99.425	870	0						
GCA_032880245.1_PDT001948598.1_genomic.fna	Salmonella_enterica	0.5211	415.978 KB	5	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABODYN010000002.1 Salmonella enterica strain PNUSAS393781 SAMN37898721-rid19913603.denovo.02, whole genome shotgun sequence	267315..267752	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABODYN010000021.1 Salmonella enterica strain PNUSAS393781 SAMN37898721-rid19913603.guided.15, whole genome shotgun sequence	36239..36676	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODYN010000001.1	160451..161320	99.54	870	0						
GCA_032880265.1_PDT001778333.1_genomic.fna	Salmonella_enterica	0.5201	171.674 KB	8	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	5	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABODYO010000001.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-ON-0045 SAMN35724181-rid18380363.denovo.01, whole genome shotgun sequence	501716..502153	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABODYO010000035.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-ON-0045 SAMN35724181-rid18380363.denovo.35, whole genome shotgun sequence	22095..22874	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	98.17	438/438	ABODYO010000066.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-ON-0045 SAMN35724181-rid18380363.guided.38, whole genome shotgun sequence	16421..16858	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABODYO010000068.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-ON-0045 SAMN35724181-rid18380363.guided.45, whole genome shotgun sequence	7711..8490	Spectinomycin, Streptomycin	D43625	fosA7	97.16	423/423	ABODYO010000007.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-ON-0045 SAMN35724181-rid18380363.denovo.07, whole genome shotgun sequence	160606..161028	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABODYO010000070.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-ON-0045 SAMN35724181-rid18380363.guided.51, whole genome shotgun sequence	3123..3545	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABODYO010000035.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-ON-0045 SAMN35724181-rid18380363.denovo.35, whole genome shotgun sequence	23379..24218	Sulfamethoxazole	U12338	sul1	100	840/840	ABODYO010000068.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-ON-0045 SAMN35724181-rid18380363.guided.45, whole genome shotgun sequence	8995..9834	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABODYO010000044.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-ON-0045 SAMN35724181-rid18380363.denovo.47, whole genome shotgun sequence	6632..7831	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABODYO010000071.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-ON-0045 SAMN35724181-rid18380363.guided.58, whole genome shotgun sequence	912..2111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABODYO010000048.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-ON-0045 SAMN35724181-rid18380363.denovo.53, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	90.27	113 / 131	ABODYO010000052.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-ON-0045 SAMN35724181-rid18380363.denovo.57, whole genome shotgun sequence	1600..1712		enterobacteriales	Col440I	93.64	110 / 114	ABODYO010000050.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-ON-0045 SAMN35724181-rid18380363.denovo.55, whole genome shotgun sequence	1566..1675		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABODYO010000022.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-ON-0045 SAMN35724181-rid18380363.denovo.22, whole genome shotgun sequence	15509..15650																																		avrA	ABODYO010000010.1	2321..3190	99.655	870	0						
GCA_032880275.1_PDT001778334.1_genomic.fna	Salmonella_enterica	0.5213	92.609 KB	16	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.S83Y	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODYM010000001.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.denovo.001, whole genome shotgun sequence	133907..134344	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODYM010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.denovo.044, whole genome shotgun sequence	6785..7621	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODYM010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.denovo.044, whole genome shotgun sequence	7621..8424	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABODYM010000113.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.guided.079, whole genome shotgun sequence	4904..5740	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODYM010000113.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.guided.079, whole genome shotgun sequence	4101..4904	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABODYM010000117.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.guided.097, whole genome shotgun sequence	1866..2303	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABODYM010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.denovo.044, whole genome shotgun sequence	37641..38786	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABODYM010000114.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.guided.088, whole genome shotgun sequence	2138..3283	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABODYM010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.denovo.044, whole genome shotgun sequence	2436..3649	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABODYM010000115.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.guided.094, whole genome shotgun sequence	1000..2213	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABODYM010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.denovo.044, whole genome shotgun sequence	8485..9300	Sulfamethoxazole	AY034138	sul2	100	816/816	ABODYM010000113.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.guided.079, whole genome shotgun sequence	3225..4040	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABODYM010000044.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.denovo.044, whole genome shotgun sequence	4250..5524	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABODYM010000116.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.guided.095, whole genome shotgun sequence	1299..2573	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																						gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncC	100	417 / 417	ABODYM010000042.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.denovo.042, whole genome shotgun sequence	17492..17908	enterobacteriales	IncFII(S)	97.71	262 / 262	ABODYM010000020.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.denovo.020, whole genome shotgun sequence	28719..28978		enterobacteriales	IncX1	98.66	374 / 374	ABODYM010000020.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-ON-ON-0040 SAMN35724180-rid18380373.denovo.020, whole genome shotgun sequence	64551..64924																																									avrA	ABODYM010000005.1	173549..174417	99.54	870	0						
GCA_032880305.1_PDT001778331.1_genomic.fna	Salmonella_enterica	0.5217	238.812 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODYP010000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0038 SAMN35724183-rid18380343.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODYP010000040.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0038 SAMN35724183-rid18380343.denovo.44, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODYP010000040.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0038 SAMN35724183-rid18380343.denovo.44, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABODYP010000063.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0038 SAMN35724183-rid18380343.guided.28, whole genome shotgun sequence	32566..33003	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODYP010000066.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0038 SAMN35724183-rid18380343.guided.43, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODYP010000066.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0038 SAMN35724183-rid18380343.guided.43, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABODYP010000043.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0038 SAMN35724183-rid18380343.denovo.48, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABODYP010000067.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0038 SAMN35724183-rid18380343.guided.47, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABODYP010000040.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0038 SAMN35724183-rid18380343.denovo.44, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABODYP010000066.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0038 SAMN35724183-rid18380343.guided.43, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942																																																																																																																																																																																																																																																																																																																																																																																																																																																																																	avrA	ABODYP010000009.1	93863..94732	99.885	870	0						
GCA_032880325.1_PDT001778330.1_genomic.fna	Salmonella_enterica	0.5206	264.773 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	Col(pHAD28),Col(pHAD28),IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABODYQ010000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0039 SAMN35724184-rid18380333.denovo.01, whole genome shotgun sequence	581399..581836	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODYQ010000043.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0039 SAMN35724184-rid18380333.denovo.44, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODYQ010000043.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0039 SAMN35724184-rid18380333.denovo.44, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABODYQ010000064.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0039 SAMN35724184-rid18380333.guided.34, whole genome shotgun sequence	2403..2840	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODYQ010000067.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0039 SAMN35724184-rid18380333.guided.49, whole genome shotgun sequence	2165..3001	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODYQ010000067.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0039 SAMN35724184-rid18380333.guided.49, whole genome shotgun sequence	1362..2165	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABODYQ010000050.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0039 SAMN35724184-rid18380333.denovo.55, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABODYQ010000069.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0039 SAMN35724184-rid18380333.guided.57, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABODYQ010000043.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0039 SAMN35724184-rid18380333.denovo.44, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABODYQ010000067.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0039 SAMN35724184-rid18380333.guided.49, whole genome shotgun sequence	486..1301	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABODYQ010000033.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0039 SAMN35724184-rid18380333.denovo.33, whole genome shotgun sequence	10940..12145	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABODYQ010000065.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0039 SAMN35724184-rid18380333.guided.46, whole genome shotgun sequence	2331..3536	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABODYQ010000038.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0039 SAMN35724184-rid18380333.denovo.39, whole genome shotgun sequence	1326..1445	enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABODYQ010000042.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0039 SAMN35724184-rid18380333.denovo.43, whole genome shotgun sequence	3199..3327		enterobacteriales	IncY	99.74	765 / 765	ABODYQ010000014.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-ON-QC-0039 SAMN35724184-rid18380333.denovo.14, whole genome shotgun sequence	38912..39676																																									avrA	ABODYQ010000002.1	540741..541610	99.885	870	0						
GCA_032880345.1_PDT001778329.1_genomic.fna	Salmonella_enterica	0.5207	301.606 KB	6	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_2,thrA_22	39	4:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_2	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABODYR010000001.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-QC-0040 SAMN35724185-rid18380323.denovo.01, whole genome shotgun sequence	421394..421831	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABODYR010000053.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-QC-0040 SAMN35724185-rid18380323.guided.27, whole genome shotgun sequence	13329..13766	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABODYR010000003.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-QC-0040 SAMN35724185-rid18380323.denovo.03, whole genome shotgun sequence	332118..332540	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABODYR010000055.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-QC-0040 SAMN35724185-rid18380323.guided.42, whole genome shotgun sequence	88..510	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABODYR010000036.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-QC-0040 SAMN35724185-rid18380323.denovo.39, whole genome shotgun sequence	186..316	enterobacteriales	ColRNAI	90.84	131 / 130	ABODYR010000033.1 Salmonella enterica subsp. enterica serovar Derby strain SAL-22-VL-ON-QC-0040 SAMN35724185-rid18380323.denovo.36, whole genome shotgun sequence	3858..3988																																																avrA	ABODYR010000007.1	39477..40346	99.655	870	0						
GCA_032880385.1_PDT001778325.1_genomic.fna	Salmonella_enterica	0.5215	447.302 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODYT010000001.1 Salmonella enterica strain PNUSAS354134 isolate CDPHFDLB-FM23-00828-B SAMN35724161-rid18380283.denovo.01, whole genome shotgun sequence	768881..769318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODYT010000041.1 Salmonella enterica strain PNUSAS354134 isolate CDPHFDLB-FM23-00828-B SAMN35724161-rid18380283.guided.16, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABODYT010000023.1 Salmonella enterica strain PNUSAS354134 isolate CDPHFDLB-FM23-00828-B SAMN35724161-rid18380283.denovo.26, whole genome shotgun sequence	547..675																																																						avrA	ABODYT010000002.1	551169..552038	99.195	870	0						
GCA_032880405.1_PDT001778327.1_genomic.fna	Salmonella_enterica	0.5218	691.246 KB	3	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODYS010000002.1 Salmonella enterica subsp. enterica serovar Brandenburg strain SAL-22-VL-ON-QC-0046 SAMN35724187-rid18380303.denovo.02, whole genome shotgun sequence	624509..624946	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABODYS010000023.1 Salmonella enterica subsp. enterica serovar Brandenburg strain SAL-22-VL-ON-QC-0046 SAMN35724187-rid18380303.guided.16, whole genome shotgun sequence	5244..5681	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABODYS010000016.1 Salmonella enterica subsp. enterica serovar Brandenburg strain SAL-22-VL-ON-QC-0046 SAMN35724187-rid18380303.denovo.19, whole genome shotgun sequence	358..488																																																																	
GCA_032880425.1_PDT001778324.1_genomic.fna	Salmonella_enterica	0.5221	337.066 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODYV010000001.1 Salmonella enterica strain PNUSAS354132 isolate CDPHFDLB-FM23-00819-B SAMN35724165-rid18380273.denovo.01, whole genome shotgun sequence	770373..770810	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODYV010000041.1 Salmonella enterica strain PNUSAS354132 isolate CDPHFDLB-FM23-00819-B SAMN35724165-rid18380273.guided.24, whole genome shotgun sequence	1517..1954	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABODYV010000025.1 Salmonella enterica strain PNUSAS354132 isolate CDPHFDLB-FM23-00819-B SAMN35724165-rid18380273.denovo.28, whole genome shotgun sequence	547..675																																																						avrA	ABODYV010000002.1	551169..552038	99.195	870	0						
GCA_032880445.1_PDT001778323.1_genomic.fna	Salmonella_enterica	0.5219	277.215 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODYU010000005.1 Salmonella enterica strain PNUSAS354135 isolate CDPHFDLB-FM23-00828-A SAMN35724162-rid18380263.denovo.05, whole genome shotgun sequence	140510..140947	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODYU010000046.1 Salmonella enterica strain PNUSAS354135 isolate CDPHFDLB-FM23-00828-A SAMN35724162-rid18380263.guided.31, whole genome shotgun sequence	1694..2131	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABODYU010000029.1 Salmonella enterica strain PNUSAS354135 isolate CDPHFDLB-FM23-00828-A SAMN35724162-rid18380263.denovo.32, whole genome shotgun sequence	547..675																																																						avrA	ABODYU010000001.1	551169..552038	99.195	870	0						
GCA_032880465.1_PDT001778321.1_genomic.fna	Salmonella_enterica	0.5215	451.449 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODYY010000001.1 Salmonella enterica strain PNUSAS354130 isolate CDPHFDLB-FM23-00850-B SAMN35724163-rid18380243.denovo.01, whole genome shotgun sequence	770373..770810	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODYY010000038.1 Salmonella enterica strain PNUSAS354130 isolate CDPHFDLB-FM23-00850-B SAMN35724163-rid18380243.guided.17, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABODYY010000022.1 Salmonella enterica strain PNUSAS354130 isolate CDPHFDLB-FM23-00850-B SAMN35724163-rid18380243.denovo.25, whole genome shotgun sequence	547..675																																																						avrA	ABODYY010000002.1	551169..552038	99.195	870	0						
GCA_032880485.1_PDT001778320.1_genomic.fna	Salmonella_enterica	0.522	336.705 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODYX010000003.1 Salmonella enterica strain PNUSAS354131 isolate CDPHFDLB-FM23-00843-A SAMN35724149-rid18380233.denovo.03, whole genome shotgun sequence	462165..462602	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABODYX010000023.1 Salmonella enterica strain PNUSAS354131 isolate CDPHFDLB-FM23-00843-A SAMN35724149-rid18380233.denovo.25, whole genome shotgun sequence	547..675																																																						avrA	ABODYX010000001.1	551169..552038	99.195	870	0						
GCA_032880505.1_PDT001778319.1_genomic.fna	Salmonella_enterica	0.522	370.274 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODZA010000002.1 Salmonella enterica strain PNUSAS354138 isolate CDPHFDLB-FM23-00827-A SAMN35724153-rid18380223.denovo.02, whole genome shotgun sequence	523476..523913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODZA010000042.1 Salmonella enterica strain PNUSAS354138 isolate CDPHFDLB-FM23-00827-A SAMN35724153-rid18380223.guided.30, whole genome shotgun sequence	999..1436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABODZA010000027.1 Salmonella enterica strain PNUSAS354138 isolate CDPHFDLB-FM23-00827-A SAMN35724153-rid18380223.denovo.29, whole genome shotgun sequence	547..675																																																						avrA	ABODZA010000001.1	551169..552038	99.195	870	0						
GCA_032880525.1_PDT001778318.1_genomic.fna	Salmonella_enterica	0.522	279.005 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODYZ010000005.1 Salmonella enterica strain PNUSAS354136 isolate CDPHFDLB-FM23-00825-B SAMN35724152-rid18380213.denovo.05, whole genome shotgun sequence	140783..141220	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODYZ010000040.1 Salmonella enterica strain PNUSAS354136 isolate CDPHFDLB-FM23-00825-B SAMN35724152-rid18380213.guided.30, whole genome shotgun sequence	93..530	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABODYZ010000025.1 Salmonella enterica strain PNUSAS354136 isolate CDPHFDLB-FM23-00825-B SAMN35724152-rid18380213.denovo.27, whole genome shotgun sequence	547..675																																																						avrA	ABODYZ010000001.1	551169..552038	99.195	870	0						
GCA_032880545.1_PDT001778317.1_genomic.fna	Salmonella_enterica	0.5219	278.758 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODZC010000006.1 Salmonella enterica strain PNUSAS354137 isolate CDPHFDLB-FM23-00825-A SAMN35724151-rid18380203.denovo.06, whole genome shotgun sequence	140510..140947	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABODZC010000027.1 Salmonella enterica strain PNUSAS354137 isolate CDPHFDLB-FM23-00825-A SAMN35724151-rid18380203.denovo.30, whole genome shotgun sequence	547..675																																																						avrA	ABODZC010000001.1	551169..552038	99.195	870	0						
GCA_032880565.1_PDT001778316.1_genomic.fna	Salmonella_enterica	0.5219	413.17 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODZB010000001.1 Salmonella enterica strain PNUSAS354139 isolate CDPHFDLB-FM23-00827-B SAMN35724150-rid18380193.denovo.01, whole genome shotgun sequence	768881..769318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODZB010000039.1 Salmonella enterica strain PNUSAS354139 isolate CDPHFDLB-FM23-00827-B SAMN35724150-rid18380193.guided.23, whole genome shotgun sequence	10447..10884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABODZB010000022.1 Salmonella enterica strain PNUSAS354139 isolate CDPHFDLB-FM23-00827-B SAMN35724150-rid18380193.denovo.25, whole genome shotgun sequence	547..675																																																						avrA	ABODZB010000002.1	551169..552038	99.195	870	0						
GCA_032880685.1_PDT001778322.1_genomic.fna	Salmonella_enterica	0.5218	370.352 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABODYW010000001.1 Salmonella enterica strain PNUSAS354133 isolate CDPHFDLB-FM23-00850-A SAMN35724164-rid18380253.denovo.01, whole genome shotgun sequence	770373..770810	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABODYW010000035.1 Salmonella enterica strain PNUSAS354133 isolate CDPHFDLB-FM23-00850-A SAMN35724164-rid18380253.guided.21, whole genome shotgun sequence	15716..16153	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABODYW010000022.1 Salmonella enterica strain PNUSAS354133 isolate CDPHFDLB-FM23-00850-A SAMN35724164-rid18380253.denovo.25, whole genome shotgun sequence	547..675																																																						avrA	ABODYW010000002.1	503665..504534	99.195	870	0						
GCA_032880865.1_PDT001778303.1_genomic.fna	Salmonella_enterica	0.5205	58.898 KB	28	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODZP010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322660 SAMN35723658-rid18378663.denovo.065, whole genome shotgun sequence	12516..12953	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODZP010000101.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322660 SAMN35723658-rid18378663.denovo.103, whole genome shotgun sequence	6219..7055	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODZP010000101.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322660 SAMN35723658-rid18378663.denovo.103, whole genome shotgun sequence	7055..7858	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABODZP010000177.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322660 SAMN35723658-rid18378663.guided.066, whole genome shotgun sequence	14106..14543	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABODZP010000179.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322660 SAMN35723658-rid18378663.guided.121, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABODZP010000179.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322660 SAMN35723658-rid18378663.guided.121, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABODZP010000127.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322660 SAMN35723658-rid18378663.denovo.131, whole genome shotgun sequence	2272..3477	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABODZP010000181.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322660 SAMN35723658-rid18378663.guided.132, whole genome shotgun sequence	2334..3539	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABODZP010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322660 SAMN35723658-rid18378663.denovo.126, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABODZP010000101.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322660 SAMN35723658-rid18378663.denovo.103, whole genome shotgun sequence	5335..5596		enterobacteriales	IncFII	96.95	262 / 261	ABODZP010000179.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322660 SAMN35723658-rid18378663.guided.121, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABODZP010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322660 SAMN35723658-rid18378663.denovo.098, whole genome shotgun sequence	3726..3867		enterobacteriales	IncX1	100	373 / 373	ABODZP010000133.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322660 SAMN35723658-rid18378663.denovo.138, whole genome shotgun sequence	2732..3104																											avrA	ABODZP010000007.1	102634..103503	99.655	870	0						
GCA_032880925.1_PDT001778301.1_genomic.fna	Salmonella_enterica	0.5222	60.759 KB	25	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABODZR010000019.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322658 SAMN35723656-rid18378653.denovo.019, whole genome shotgun sequence	48306..48743	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABODZR010000045.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322658 SAMN35723656-rid18378653.denovo.045, whole genome shotgun sequence	24793..25595	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABODZR010000045.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322658 SAMN35723656-rid18378653.denovo.045, whole genome shotgun sequence	24793..25596	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABODZR010000045.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322658 SAMN35723656-rid18378653.denovo.045, whole genome shotgun sequence	24793..25596	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABODZR010000045.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322658 SAMN35723656-rid18378653.denovo.045, whole genome shotgun sequence	24793..25596	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABODZR010000045.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322658 SAMN35723656-rid18378653.denovo.045, whole genome shotgun sequence	24053..24793	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABODZR010000045.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322658 SAMN35723656-rid18378653.denovo.045, whole genome shotgun sequence	24053..24793	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABODZR010000163.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322658 SAMN35723656-rid18378653.guided.068, whole genome shotgun sequence	13086..13523	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABODZR010000166.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322658 SAMN35723656-rid18378653.guided.106, whole genome shotgun sequence	204..1006	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABODZR010000166.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322658 SAMN35723656-rid18378653.guided.106, whole genome shotgun sequence	203..1006	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABODZR010000166.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322658 SAMN35723656-rid18378653.guided.106, whole genome shotgun sequence	203..1006	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABODZR010000166.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322658 SAMN35723656-rid18378653.guided.106, whole genome shotgun sequence	203..1006	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABODZR010000166.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322658 SAMN35723656-rid18378653.guided.106, whole genome shotgun sequence	1006..1746	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABODZR010000166.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322658 SAMN35723656-rid18378653.guided.106, whole genome shotgun sequence	1006..1746	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABODZR010000110.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322658 SAMN35723656-rid18378653.denovo.114, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABODZR010000045.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322658 SAMN35723656-rid18378653.denovo.045, whole genome shotgun sequence	12528..13024																																																avrA	ABODZR010000037.1	43675..44544	98.966	870	0						
GCA_032880945.1_PDT001778300.1_genomic.fna	Salmonella_enterica	0.5228	62.525 KB	25	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABODZS010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322659 SAMN35723657-rid18378643.denovo.055, whole genome shotgun sequence	12484..12921	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABODZS010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322659 SAMN35723657-rid18378643.denovo.069, whole genome shotgun sequence	18428..19219	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABODZS010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322659 SAMN35723657-rid18378643.denovo.069, whole genome shotgun sequence	18428..19219	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABODZS010000159.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322659 SAMN35723657-rid18378643.guided.066, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABODZS010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322659 SAMN35723657-rid18378643.guided.124, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABODZS010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322659 SAMN35723657-rid18378643.guided.124, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABODZS010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322659 SAMN35723657-rid18378643.denovo.069, whole genome shotgun sequence	17084..17923	Sulfamethoxazole	U12338	sul1	100	840/840	ABODZS010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322659 SAMN35723657-rid18378643.guided.124, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABODZS010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322659 SAMN35723657-rid18378643.denovo.069, whole genome shotgun sequence	3368..4567	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABODZS010000160.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322659 SAMN35723657-rid18378643.guided.088, whole genome shotgun sequence	11029..12228	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABODZS010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322659 SAMN35723657-rid18378643.denovo.125, whole genome shotgun sequence	264..737	Trimethoprim	AF393510	dfrA14	100	474/474	ABODZS010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322659 SAMN35723657-rid18378643.guided.135, whole genome shotgun sequence	305..778	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABODZS010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322659 SAMN35723657-rid18378643.denovo.117, whole genome shotgun sequence	2025..2584																																																						avrA	ABODZS010000007.1	81701..82570	99.655	870	0						
GCA_032881065.1_PDT001778291.1_genomic.fna	Salmonella_enterica	0.5216	97.01 KB	15	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOEAA010000025.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322680 SAMN35723537-rid18378583.denovo.25, whole genome shotgun sequence	49850..50287	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEAA010000067.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322680 SAMN35723537-rid18378583.denovo.69, whole genome shotgun sequence	6150..6986	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABOEAA010000067.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322680 SAMN35723537-rid18378583.denovo.69, whole genome shotgun sequence	5119..5932	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin	V00359	aph(3'')-Ib	100	804/804	ABOEAA010000067.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322680 SAMN35723537-rid18378583.denovo.69, whole genome shotgun sequence	6986..7789	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABOEAA010000082.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322680 SAMN35723537-rid18378583.guided.56, whole genome shotgun sequence	20588..21025	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEAA010000084.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322680 SAMN35723537-rid18378583.guided.70, whole genome shotgun sequence	7939..8775	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABOEAA010000084.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322680 SAMN35723537-rid18378583.guided.70, whole genome shotgun sequence	8993..9806	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin	V00359	aph(3'')-Ib	100	804/804	ABOEAA010000084.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322680 SAMN35723537-rid18378583.guided.70, whole genome shotgun sequence	7136..7939	Streptomycin	AF321551	sul2	99.88	816/816	ABOEAA010000032.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322680 SAMN35723537-rid18378583.denovo.32, whole genome shotgun sequence	3313..4128	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABOEAA010000083.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322680 SAMN35723537-rid18378583.guided.68, whole genome shotgun sequence	12297..13112	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOEAA010000068.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322680 SAMN35723537-rid18378583.denovo.73, whole genome shotgun sequence	2034..3239	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOEAA010000087.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322680 SAMN35723537-rid18378583.guided.77, whole genome shotgun sequence	1914..3119	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEAA010000011.1	122532..123400	99.655	869	0						
GCA_032881105.1_PDT001778290.1_genomic.fna	Salmonella_enterica	0.5211	97.84 KB	17	aroC_104,dnaN_100,hemD_54,hisD_78,purE_104,sucA_9,thrA_48	292	8:z4,z24:-	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_104	dnaN	100	100	dnaN_100	hemD	100	100	hemD_54	hisD	100	100	hisD_78	purE	100	100	purE_104	sucA	100	100	sucA_9	thrA	100	100	thrA_48	8	z4,z24	-	Salmonella enterica subspecies enterica (subspecies I)	Albany or Duesseldorf	The predicted serotypes share the same general formula: 8:z4,z24:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEAB010000026.1 Salmonella enterica subsp. enterica serovar Albany strain FSIS12322679 SAMN35723536-rid18378573.denovo.26, whole genome shotgun sequence	17204..17641	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEAB010000087.1 Salmonella enterica subsp. enterica serovar Albany strain FSIS12322679 SAMN35723536-rid18378573.guided.54, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOEAB010000015.1 Salmonella enterica subsp. enterica serovar Albany strain FSIS12322679 SAMN35723536-rid18378573.denovo.15, whole genome shotgun sequence	72831..73976	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEAB010000090.1 Salmonella enterica subsp. enterica serovar Albany strain FSIS12322679 SAMN35723536-rid18378573.guided.72, whole genome shotgun sequence	2781..3926	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEAB010000015.1 Salmonella enterica subsp. enterica serovar Albany strain FSIS12322679 SAMN35723536-rid18378573.denovo.15, whole genome shotgun sequence	84436..84577																																																						avrA	ABOEAB010000010.1	119841..120710	99.08	870	0						
GCA_032881285.1_PDT001778280.1_genomic.fna	Salmonella_enterica	0.5224	48.364 KB	31	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),Col440I,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEAJ010000074.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322678 SAMN35723528-rid18378503.denovo.074, whole genome shotgun sequence	12481..12918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEAJ010000157.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322678 SAMN35723528-rid18378503.guided.095, whole genome shotgun sequence	15692..16129	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABOEAJ010000064.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322678 SAMN35723528-rid18378503.denovo.064, whole genome shotgun sequence	24302..25117	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEAJ010000161.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322678 SAMN35723528-rid18378503.guided.136, whole genome shotgun sequence	1589..2404	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOEAJ010000064.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322678 SAMN35723528-rid18378503.denovo.064, whole genome shotgun sequence	27294..28493	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOEAJ010000160.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322678 SAMN35723528-rid18378503.guided.135, whole genome shotgun sequence	850..2049	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOEAJ010000126.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322678 SAMN35723528-rid18378503.denovo.129, whole genome shotgun sequence	371..501	enterobacteriales	Col440I	93.81	113 / 114	ABOEAJ010000133.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322678 SAMN35723528-rid18378503.denovo.138, whole genome shotgun sequence	2528..2639		enterobacteriales	IncC	100	417 / 417	ABOEAJ010000013.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322678 SAMN35723528-rid18378503.denovo.013, whole genome shotgun sequence	24078..24494																																									avrA	ABOEAJ010000008.1	104900..105769	99.885	870	0						
GCA_032881305.1_PDT001778278.1_genomic.fna	Salmonella_enterica	0.5215	104.704 KB	16	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEAL010000007.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.denovo.007, whole genome shotgun sequence	11262..11699	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEAL010000042.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.denovo.042, whole genome shotgun sequence	6829..7665	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEAL010000042.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.denovo.042, whole genome shotgun sequence	7665..8468	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOEAL010000093.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.denovo.101, whole genome shotgun sequence	137..952	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	V00359	aac(6')-Iaa	98.63	438/438	ABOEAL010000102.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.guided.062, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEAL010000105.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.guided.074, whole genome shotgun sequence	6003..6839	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEAL010000105.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.guided.074, whole genome shotgun sequence	5200..6003	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOEAL010000109.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.guided.100, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	V00359	blaTEM-214	100	823/861	ABOEAL010000079.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.denovo.084, whole genome shotgun sequence	3300..4122	Unknown Beta-lactam	KP050491	blaTEM-206	100	823/861	ABOEAL010000079.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.denovo.084, whole genome shotgun sequence	3300..4122	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	823/861	ABOEAL010000079.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.denovo.084, whole genome shotgun sequence	3300..4122	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOEAL010000085.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.denovo.091, whole genome shotgun sequence	1605..2750	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEAL010000104.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.guided.069, whole genome shotgun sequence	11075..12220	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOEAL010000108.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.guided.097, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEAL010000108.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.guided.097, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEAL010000108.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.guided.097, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABOEAL010000042.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.denovo.042, whole genome shotgun sequence	2480..3693	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEAL010000107.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.guided.085, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEAL010000042.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.denovo.042, whole genome shotgun sequence	8529..9344	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEAL010000105.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.guided.074, whole genome shotgun sequence	4324..5139	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEAL010000042.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.denovo.042, whole genome shotgun sequence	4294..5568	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEAL010000105.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.guided.074, whole genome shotgun sequence	8100..9374	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncC	100	417 / 417	ABOEAL010000062.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.denovo.063, whole genome shotgun sequence	1574..1990	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEAL010000048.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.denovo.048, whole genome shotgun sequence	5432..5691		enterobacteriales	IncX1	98.66	374 / 374	ABOEAL010000082.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12322664 SAMN35723524-rid18378493.denovo.088, whole genome shotgun sequence	311..684																																									avrA	ABOEAL010000002.1	173549..174417	99.54	870	0						
GCA_032881325.1_PDT001778276.1_genomic.fna	Salmonella_enterica	0.5218	139.649 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEAO010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322661 SAMN35723522-rid18378483.denovo.01, whole genome shotgun sequence	192798..193235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEAO010000072.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322661 SAMN35723522-rid18378483.guided.43, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEAO010000046.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322661 SAMN35723522-rid18378483.denovo.47, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOEAO010000048.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322661 SAMN35723522-rid18378483.denovo.50, whole genome shotgun sequence	3412..3673																																																avrA	ABOEAO010000002.1	175197..176066	99.54	870	0						
GCA_032881365.1_PDT001778277.1_genomic.fna	Salmonella_enterica	0.5202	81.022 KB	19	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	2	Col156,IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEAM010000023.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322662 SAMN35723521-rid18380023.denovo.023, whole genome shotgun sequence	16051..16488	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEAM010000129.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322662 SAMN35723521-rid18380023.guided.064, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOEAM010000011.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322662 SAMN35723521-rid18380023.denovo.011, whole genome shotgun sequence	18026..18448	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOEAM010000131.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322662 SAMN35723521-rid18380023.guided.085, whole genome shotgun sequence	6426..6848	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	ABOEAM010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322662 SAMN35723521-rid18380023.denovo.021, whole genome shotgun sequence	69334..70539	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOEAM010000130.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322662 SAMN35723521-rid18380023.guided.084, whole genome shotgun sequence	6831..8036	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	ABOEAM010000090.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322662 SAMN35723521-rid18380023.denovo.095, whole genome shotgun sequence	791..944	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEAM010000088.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322662 SAMN35723521-rid18380023.denovo.093, whole genome shotgun sequence	273..414		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEAM010000130.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322662 SAMN35723521-rid18380023.guided.084, whole genome shotgun sequence	304..445																																									avrA	ABOEAM010000004.1	95967..96836	99.195	870	0						
GCA_032881385.1_PDT001778275.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEAP010000001.1 Salmonella enterica strain PNUSAS355708 SAMN35723303-rid18378473.denovo.01, whole genome shotgun sequence	771821..772258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEAP010000021.1 Salmonella enterica strain PNUSAS355708 SAMN35723303-rid18378473.guided.10, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABOEAP010000002.1	553636..554505	99.54	870	0						
GCA_032881405.1_PDT001778273.1_genomic.fna	Salmonella_enterica	0.5204	762.445 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEAR010000001.1 Salmonella enterica strain PNUSAS355711 SAMN35723277-rid18378463.denovo.01, whole genome shotgun sequence	481966..482403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOEAR010000021.1 Salmonella enterica strain PNUSAS355711 SAMN35723277-rid18378463.guided.08, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI2(Delta)	100	316 / 316	ABOEAR010000011.1 Salmonella enterica strain PNUSAS355711 SAMN35723277-rid18378463.denovo.13, whole genome shotgun sequence	26501..26816																																																						avrA	ABOEAR010000004.1	553510..554379	99.655	870	0						
GCA_032881425.1_PDT001778272.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEAQ010000001.1 Salmonella enterica strain PNUSAS355710 SAMN35723280-rid18380003.denovo.01, whole genome shotgun sequence	773788..774225	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEAQ010000022.1 Salmonella enterica strain PNUSAS355710 SAMN35723280-rid18380003.guided.10, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFII(S)	100	262 / 262	ABOEAQ010000014.1 Salmonella enterica strain PNUSAS355710 SAMN35723280-rid18380003.denovo.17, whole genome shotgun sequence	2930..3191																																																						avrA	ABOEAQ010000002.1	553642..554511	99.54	870	0						
GCA_032881505.1_PDT001778271.1_genomic.fna	Salmonella_enterica	0.5219	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEAU010000001.1 Salmonella enterica strain PNUSAS355712 SAMN35723278-rid18378453.denovo.01, whole genome shotgun sequence	833156..833593	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEAU010000029.1 Salmonella enterica strain PNUSAS355712 SAMN35723278-rid18378453.guided.11, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOEAU010000017.1 Salmonella enterica strain PNUSAS355712 SAMN35723278-rid18378453.denovo.20, whole genome shotgun sequence	2914..3044																																																						avrA	ABOEAU010000002.1	94005..94874	98.966	870	0						
GCA_032881565.1_PDT001778270.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEAT010000001.1 Salmonella enterica strain PNUSAS355709 SAMN35723279-rid18378443.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEAT010000022.1 Salmonella enterica strain PNUSAS355709 SAMN35723279-rid18378443.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFII(S)	100	262 / 262	ABOEAT010000015.1 Salmonella enterica strain PNUSAS355709 SAMN35723279-rid18378443.denovo.18, whole genome shotgun sequence	3188..3449																																																						avrA	ABOEAT010000002.1	553636..554505	99.54	870	0						
GCA_032881605.1_PDT001778262.1_genomic.fna	Salmonella_enterica	0.521	351.48 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBA010000002.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.denovo.02, whole genome shotgun sequence	159452..159889	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBA010000020.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.denovo.20, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBA010000020.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.denovo.20, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEBA010000036.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.guided.22, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBA010000036.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.guided.22, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBA010000040.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.guided.31, whole genome shotgun sequence	42..479	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOEBA010000020.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.denovo.20, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEBA010000036.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.guided.22, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOEBA010000020.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.denovo.20, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBA010000039.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.guided.29, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBA010000020.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.denovo.20, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBA010000036.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.guided.22, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBA010000020.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.denovo.20, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBA010000036.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.guided.22, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOEBA010000021.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.denovo.21, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBA010000016.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.denovo.16, whole genome shotgun sequence	29345..29604		enterobacteriales	IncX1	98.66	374 / 374	ABOEBA010000016.1 Salmonella enterica strain AG23-0121 SAMN35723229-rid18379963.denovo.16, whole genome shotgun sequence	65199..65572																																									avrA	ABOEBA010000007.1	173549..174417	99.54	870	0						
GCA_032881645.1_PDT001778261.1_genomic.fna	Salmonella_enterica	0.521	363.494 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2b,blaCMY-61,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBB010000001.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.denovo.01, whole genome shotgun sequence	479606..480043	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBB010000021.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.denovo.21, whole genome shotgun sequence	28244..29080	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBB010000021.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.denovo.21, whole genome shotgun sequence	27441..28244	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEBB010000042.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.guided.23, whole genome shotgun sequence	28285..29121	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBB010000042.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.guided.23, whole genome shotgun sequence	27482..28285	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBB010000046.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.guided.31, whole genome shotgun sequence	1697..2134	Amikacin, Tobramycin	NC_003197	blaCMY-2b	100	1082/1146	ABOEBB010000029.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.denovo.35, whole genome shotgun sequence	1..1082	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	U77414	blaCMY-61	100	1082/1143	ABOEBB010000029.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.denovo.35, whole genome shotgun sequence	1..1082	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	JF460795	blaCMY-2	100	1082/1146	ABOEBB010000029.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.denovo.35, whole genome shotgun sequence	1..1082	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEBB010000047.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.guided.32, whole genome shotgun sequence	1776..2921	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOEBB010000021.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.denovo.21, whole genome shotgun sequence	32216..33429	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBB010000045.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.guided.29, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBB010000021.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.denovo.21, whole genome shotgun sequence	26565..27380	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBB010000042.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.guided.23, whole genome shotgun sequence	26606..27421	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBB010000021.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.denovo.21, whole genome shotgun sequence	30341..31615	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBB010000042.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.guided.23, whole genome shotgun sequence	30382..31656	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	IncC	100	417 / 417	ABOEBB010000019.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.denovo.19, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBB010000015.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.denovo.15, whole genome shotgun sequence	29345..29604		enterobacteriales	IncX1	98.66	374 / 374	ABOEBB010000015.1 Salmonella enterica strain AG23-0122 SAMN35723230-rid18378393.denovo.15, whole genome shotgun sequence	65199..65572																																									avrA	ABOEBB010000007.1	173549..174417	99.54	870	0						
GCA_032881665.1_PDT001778260.1_genomic.fna	Salmonella_enterica	0.5209	263.566 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEBC010000001.1 Salmonella enterica strain AG23-0131 SAMN35723239-rid18378383.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOEBC010000042.1 Salmonella enterica strain AG23-0131 SAMN35723239-rid18378383.guided.32, whole genome shotgun sequence	191..628	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEBC010000018.1 Salmonella enterica strain AG23-0131 SAMN35723239-rid18378383.denovo.18, whole genome shotgun sequence	65958..66099																																																						avrA	ABOEBC010000002.1	149828..150697	99.655	870	0						
GCA_032881685.1_PDT001778259.1_genomic.fna	Salmonella_enterica	0.521	367.284 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBD010000006.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.denovo.06, whole genome shotgun sequence	105758..106195	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBD010000020.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.denovo.20, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBD010000020.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.denovo.20, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEBD010000043.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.guided.27, whole genome shotgun sequence	4500..5336	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBD010000043.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.guided.27, whole genome shotgun sequence	3697..4500	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBD010000045.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.guided.33, whole genome shotgun sequence	364..801	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOEBD010000020.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.denovo.20, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEBD010000041.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.guided.25, whole genome shotgun sequence	13948..15093	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOEBD010000020.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.denovo.20, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBD010000044.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBD010000020.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.denovo.20, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBD010000043.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.guided.27, whole genome shotgun sequence	2821..3636	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBD010000020.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.denovo.20, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBD010000043.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.guided.27, whole genome shotgun sequence	6597..7871	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOEBD010000021.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.denovo.21, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBD010000015.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.denovo.15, whole genome shotgun sequence	29345..29604		enterobacteriales	IncX1	98.66	374 / 374	ABOEBD010000015.1 Salmonella enterica strain AG23-0132 SAMN35723240-rid18379953.denovo.15, whole genome shotgun sequence	65199..65572																																									avrA	ABOEBD010000008.1	173549..174417	99.54	870	0						
GCA_032881705.1_PDT001778258.1_genomic.fna	Salmonella_enterica	0.5211	401.731 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBF010000004.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.denovo.04, whole genome shotgun sequence	159453..159890	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBF010000019.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.denovo.19, whole genome shotgun sequence	2501..3337	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBF010000019.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.denovo.19, whole genome shotgun sequence	3337..4140	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBF010000041.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.guided.24, whole genome shotgun sequence	6500..6937	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBF010000043.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.guided.29, whole genome shotgun sequence	328..1164	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBF010000044.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.guided.33, whole genome shotgun sequence	1079..1882	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOEBF010000019.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.denovo.19, whole genome shotgun sequence	33357..34502	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEBF010000045.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.guided.34, whole genome shotgun sequence	10..1155	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	97.82	1007/1215	ABOEBF010000023.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.denovo.26, whole genome shotgun sequence	3278..4284	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBF010000042.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.guided.28, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBF010000019.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.denovo.19, whole genome shotgun sequence	4201..5016	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBF010000044.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.guided.33, whole genome shotgun sequence	203..1018	Sulfamethoxazole	AY034138	tet(A)	100	1240/1275	ABOEBF010000019.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.denovo.19, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBF010000043.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.guided.29, whole genome shotgun sequence	2425..3699	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOEBF010000018.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.denovo.18, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBF010000015.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.denovo.15, whole genome shotgun sequence	29345..29604		enterobacteriales	IncX1	98.66	374 / 374	ABOEBF010000015.1 Salmonella enterica strain AG23-0133 SAMN35723241-rid18378373.denovo.15, whole genome shotgun sequence	65199..65572																																									avrA	ABOEBF010000008.1	173549..174417	99.54	870	0						
GCA_032881725.1_PDT001778257.1_genomic.fna	Salmonella_enterica	0.521	401.618 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBE010000003.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.denovo.03, whole genome shotgun sequence	159454..159891	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBE010000019.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.denovo.19, whole genome shotgun sequence	32533..33369	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBE010000019.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.denovo.19, whole genome shotgun sequence	31730..32533	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEBE010000043.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.guided.25, whole genome shotgun sequence	3125..3961	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBE010000043.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.guided.25, whole genome shotgun sequence	2322..3125	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBE010000044.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.guided.30, whole genome shotgun sequence	1808..2245	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOEBE010000019.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.denovo.19, whole genome shotgun sequence	1368..2513	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEBE010000046.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.guided.34, whole genome shotgun sequence	107..1252	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOEBE010000025.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.denovo.28, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBE010000045.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.guided.33, whole genome shotgun sequence	112..1325	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBE010000019.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.denovo.19, whole genome shotgun sequence	30854..31669	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBE010000043.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.guided.25, whole genome shotgun sequence	1446..2261	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBE010000019.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.denovo.19, whole genome shotgun sequence	34630..35904	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBE010000043.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.guided.25, whole genome shotgun sequence	5222..6496	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOEBE010000020.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.denovo.20, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBE010000016.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.denovo.16, whole genome shotgun sequence	29345..29604		enterobacteriales	IncX1	98.66	374 / 374	ABOEBE010000016.1 Salmonella enterica strain AG23-0134 SAMN35723242-rid18379943.denovo.16, whole genome shotgun sequence	65199..65572																																									avrA	ABOEBE010000008.1	173549..174417	99.54	870	0						
GCA_032881765.1_PDT001778255.1_genomic.fna	Salmonella_enterica	0.5211	351.48 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBI010000001.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.denovo.01, whole genome shotgun sequence	159452..159889	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBI010000023.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.denovo.23, whole genome shotgun sequence	2501..3337	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBI010000023.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.denovo.23, whole genome shotgun sequence	3337..4140	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBI010000042.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.guided.28, whole genome shotgun sequence	4873..5310	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBI010000044.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.guided.34, whole genome shotgun sequence	1330..2166	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBI010000044.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.guided.34, whole genome shotgun sequence	527..1330	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOEBI010000023.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.denovo.23, whole genome shotgun sequence	33357..34502	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEBI010000046.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.guided.36, whole genome shotgun sequence	430..1575	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	97.82	1007/1215	ABOEBI010000028.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.denovo.31, whole genome shotgun sequence	3278..4284	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBI010000043.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.guided.32, whole genome shotgun sequence	1957..3170	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBI010000023.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.denovo.23, whole genome shotgun sequence	4201..5016	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBI010000047.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.guided.38, whole genome shotgun sequence	50..865	Sulfamethoxazole	AY034138	tet(A)	100	1240/1275	ABOEBI010000023.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.denovo.23, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBI010000045.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.guided.35, whole genome shotgun sequence	667..1941	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOEBI010000022.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.denovo.22, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBI010000017.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.denovo.17, whole genome shotgun sequence	30145..30404		enterobacteriales	IncX1	98.66	374 / 374	ABOEBI010000017.1 Salmonella enterica strain AG23-0136 SAMN35723244-rid18378353.denovo.17, whole genome shotgun sequence	65999..66372																																									avrA	ABOEBI010000007.1	173549..174417	99.54	870	0						
GCA_032881785.1_PDT001778256.1_genomic.fna	Salmonella_enterica	0.521	367.896 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(6)-Id,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBG010000002.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.denovo.02, whole genome shotgun sequence	159453..159890	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBG010000021.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.denovo.21, whole genome shotgun sequence	507..1343	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBG010000021.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.denovo.21, whole genome shotgun sequence	1343..2146	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBG010000044.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.guided.31, whole genome shotgun sequence	1250..1687	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	804/804	ABOEBG010000047.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.guided.37, whole genome shotgun sequence	4..807	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEBG010000048.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.guided.38, whole genome shotgun sequence	323..1159	Streptomycin	M28829	blaCMY-2	100	1146/1146	ABOEBG010000021.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.denovo.21, whole genome shotgun sequence	31363..32508	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEBG010000043.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.guided.29, whole genome shotgun sequence	1658..2803	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOEBG010000025.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.denovo.26, whole genome shotgun sequence	614..1827	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBG010000045.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.guided.32, whole genome shotgun sequence	1112..2325	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBG010000021.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.denovo.21, whole genome shotgun sequence	2207..3022	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBG010000049.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.guided.40, whole genome shotgun sequence	127..942	Sulfamethoxazole	AY034138	tet(A)	100	1240/1275	ABOEBG010000029.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.denovo.34, whole genome shotgun sequence	723..1962	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBG010000046.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.guided.35, whole genome shotgun sequence	382..1656	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOEBG010000020.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.denovo.20, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBG010000016.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.denovo.16, whole genome shotgun sequence	30145..30404		enterobacteriales	IncX1	98.66	374 / 374	ABOEBG010000016.1 Salmonella enterica strain AG23-0135 SAMN35723243-rid18378363.denovo.16, whole genome shotgun sequence	65999..66372																																									avrA	ABOEBG010000007.1	173549..174417	99.54	870	0						
GCA_032881815.1_PDT001778253.1_genomic.fna	Salmonella_enterica	0.5209	282.274 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	13	aac(6')-Iaa,aadA2,aadA1,aph(3')-Ia,aadA1,aadA2,aac(6')-Iaa,aph(3')-Ia,blaTEM-1B,blaTEM-1B,cmlA1,floR,cml,floR,cmlA1,cmlA1,sul3,sul2,sul2,sul3,tet(B),tet(M),tet(M),tet(B),dfrA12,dfrA12	0		2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEBK010000001.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.denovo.01, whole genome shotgun sequence	581406..581843	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOEBK010000029.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.denovo.31, whole genome shotgun sequence	7095..7886	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOEBK010000029.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.denovo.31, whole genome shotgun sequence	4690..5481	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOEBK010000041.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.denovo.54, whole genome shotgun sequence	136..951	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	V00359	aadA1	100	792/792	ABOEBK010000060.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.guided.33, whole genome shotgun sequence	860..1651	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOEBK010000061.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.guided.34, whole genome shotgun sequence	4802..5593	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	100	438/438	ABOEBK010000064.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.guided.41, whole genome shotgun sequence	2740..3177	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOEBK010000070.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.guided.53, whole genome shotgun sequence	126..941	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	V00359	blaTEM-1B	100	861/861	ABOEBK010000031.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.denovo.36, whole genome shotgun sequence	979..1839	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOEBK010000068.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.guided.48, whole genome shotgun sequence	1020..1880	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOEBK010000029.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.denovo.31, whole genome shotgun sequence	5574..6833	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOEBK010000034.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.denovo.39, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	cml	96.46	848/909	ABOEBK010000060.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.guided.33, whole genome shotgun sequence	1..841	Chloramphenicol	M22614	floR	98.11	1214/1215	ABOEBK010000063.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.guided.40, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.84	1260/1260	ABOEBK010000066.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.guided.46, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOEBK010000067.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.guided.47, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	sul3	100	792/792	ABOEBK010000031.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.denovo.36, whole genome shotgun sequence	2097..2888	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABOEBK010000035.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.denovo.42, whole genome shotgun sequence	329..1144	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBK010000065.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.guided.43, whole genome shotgun sequence	1897..2712	Sulfamethoxazole	AY034138	sul3	100	792/792	ABOEBK010000069.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.guided.49, whole genome shotgun sequence	505..1296	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABOEBK010000028.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.denovo.29, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOEBK010000029.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.denovo.31, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABOEBK010000060.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.guided.33, whole genome shotgun sequence	3579..5498	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOEBK010000062.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.guided.35, whole genome shotgun sequence	4094..5299	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABOEBK010000029.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.denovo.31, whole genome shotgun sequence	8294..8791	Trimethoprim	AM040708	dfrA12	100	498/498	ABOEBK010000061.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.guided.34, whole genome shotgun sequence	3897..4394	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																						enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOEBK010000026.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.denovo.27, whole genome shotgun sequence	19808..20489	enterobacteriales	IncFIC(FII)	94	500 / 499	ABOEBK010000021.1 Salmonella enterica strain AG23-0138 SAMN35723246-rid18378343.denovo.21, whole genome shotgun sequence	55736..56232																																																avrA	ABOEBK010000002.1	540192..541061	99.885	870	0						
GCA_032881825.1_PDT001778254.1_genomic.fna	Salmonella_enterica	0.5214	244.379 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEBH010000001.1 Salmonella enterica strain AG23-0137 SAMN35723245-rid18379933.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.92	384/438	ABOEBH010000042.1 Salmonella enterica strain AG23-0137 SAMN35723245-rid18379933.guided.30, whole genome shotgun sequence	1..384	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEBH010000004.1	149828..150697	99.655	870	0						
GCA_032881855.1_PDT001778252.1_genomic.fna	Salmonella_enterica	0.5211	405.765 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBJ010000001.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.denovo.01, whole genome shotgun sequence	479550..479987	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBJ010000019.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.denovo.19, whole genome shotgun sequence	31733..32569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBJ010000019.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.denovo.19, whole genome shotgun sequence	30930..31733	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEBJ010000037.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.guided.22, whole genome shotgun sequence	9472..10308	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBJ010000037.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.guided.22, whole genome shotgun sequence	8669..9472	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBJ010000039.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.guided.27, whole genome shotgun sequence	2283..2720	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOEBJ010000019.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.denovo.19, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOEBJ010000024.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.denovo.26, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEBJ010000024.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.denovo.26, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEBJ010000024.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.denovo.26, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOEBJ010000042.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.guided.31, whole genome shotgun sequence	630..1775	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOEBJ010000043.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.guided.32, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEBJ010000043.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.guided.32, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEBJ010000043.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.guided.32, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOEBJ010000019.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.denovo.19, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBJ010000037.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.guided.22, whole genome shotgun sequence	7793..8608	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBJ010000019.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.denovo.19, whole genome shotgun sequence	33830..35104	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBJ010000040.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.guided.28, whole genome shotgun sequence	557..1831	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncC	100	417 / 417	ABOEBJ010000018.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.denovo.18, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBJ010000014.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.denovo.14, whole genome shotgun sequence	29422..29681		enterobacteriales	IncX1	98.66	374 / 374	ABOEBJ010000014.1 Salmonella enterica strain AG23-0140 SAMN35723247-rid18379923.denovo.14, whole genome shotgun sequence	65276..65649																																									avrA	ABOEBJ010000002.1	504491..505359	99.54	870	0						
GCA_032881875.1_PDT001778250.1_genomic.fna	Salmonella_enterica	0.521	351.48 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2b,blaCMY-61,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBM010000002.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.denovo.02, whole genome shotgun sequence	159455..159892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBM010000022.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.denovo.22, whole genome shotgun sequence	28244..29080	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBM010000022.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.denovo.22, whole genome shotgun sequence	27441..28244	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEBM010000041.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.guided.26, whole genome shotgun sequence	12494..13330	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBM010000041.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.guided.26, whole genome shotgun sequence	11691..12494	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBM010000045.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.guided.32, whole genome shotgun sequence	985..1422	Amikacin, Tobramycin	NC_003197	blaCMY-2b	100	1082/1146	ABOEBM010000030.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.denovo.37, whole genome shotgun sequence	1..1082	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	U77414	blaCMY-61	100	1082/1143	ABOEBM010000030.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.denovo.37, whole genome shotgun sequence	1..1082	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	JF460795	blaCMY-2	100	1082/1146	ABOEBM010000030.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.denovo.37, whole genome shotgun sequence	1..1082	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEBM010000043.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.guided.30, whole genome shotgun sequence	1776..2921	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOEBM010000022.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.denovo.22, whole genome shotgun sequence	32216..33429	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBM010000042.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.guided.29, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBM010000022.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.denovo.22, whole genome shotgun sequence	26565..27380	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBM010000041.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.guided.26, whole genome shotgun sequence	10815..11630	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBM010000022.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.denovo.22, whole genome shotgun sequence	30341..31615	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBM010000046.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.guided.36, whole genome shotgun sequence	492..1766	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	IncC	100	417 / 417	ABOEBM010000020.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.denovo.20, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBM010000016.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.denovo.16, whole genome shotgun sequence	29345..29604		enterobacteriales	IncX1	98.66	374 / 374	ABOEBM010000016.1 Salmonella enterica strain AG23-0123 SAMN35723231-rid18378323.denovo.16, whole genome shotgun sequence	65199..65572																																									avrA	ABOEBM010000007.1	173549..174417	99.54	870	0						
GCA_032881895.1_PDT001778251.1_genomic.fna	Salmonella_enterica	0.5212	405.771 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBL010000004.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.denovo.04, whole genome shotgun sequence	159427..159864	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBL010000018.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.denovo.19, whole genome shotgun sequence	31733..32569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBL010000018.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.denovo.19, whole genome shotgun sequence	30930..31733	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEBL010000035.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.guided.18, whole genome shotgun sequence	31774..32610	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBL010000035.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.guided.18, whole genome shotgun sequence	30971..31774	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBL010000038.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.guided.26, whole genome shotgun sequence	2215..2652	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOEBL010000018.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.denovo.19, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOEBL010000022.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.denovo.25, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEBL010000022.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.denovo.25, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEBL010000022.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.denovo.25, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOEBL010000035.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.guided.18, whole genome shotgun sequence	609..1754	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOEBL010000039.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.guided.27, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEBL010000039.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.guided.27, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEBL010000039.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.guided.27, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOEBL010000018.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.denovo.19, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBL010000035.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.guided.18, whole genome shotgun sequence	30095..30910	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBL010000018.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.denovo.19, whole genome shotgun sequence	33830..35104	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBL010000035.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.guided.18, whole genome shotgun sequence	33871..35145	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncC	100	417 / 417	ABOEBL010000017.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.denovo.17, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBL010000014.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.denovo.14, whole genome shotgun sequence	29422..29681		enterobacteriales	IncX1	98.66	374 / 374	ABOEBL010000014.1 Salmonella enterica strain AG23-0141 SAMN35723248-rid18378333.denovo.14, whole genome shotgun sequence	65276..65649																																									avrA	ABOEBL010000007.1	173554..174422	99.54	870	0						
GCA_032881915.1_PDT001778249.1_genomic.fna	Salmonella_enterica	0.5209	401.713 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBN010000004.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.denovo.04, whole genome shotgun sequence	159441..159878	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBN010000019.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.denovo.21, whole genome shotgun sequence	31733..32569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBN010000019.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.denovo.21, whole genome shotgun sequence	30930..31733	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOEBN010000028.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.denovo.38, whole genome shotgun sequence	137..952	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	V00359	aac(6')-Iaa	98.63	438/438	ABOEBN010000043.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.guided.20, whole genome shotgun sequence	723..1160	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBN010000046.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.guided.31, whole genome shotgun sequence	391..1227	Streptomycin	M28829	aph(3')-Ia	100	816/816	ABOEBN010000051.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.guided.37, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	V00359	aph(3'')-Ib	100	804/804	ABOEBN010000052.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.guided.39, whole genome shotgun sequence	8..811	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOEBN010000019.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.denovo.21, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOEBN010000024.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.denovo.27, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEBN010000024.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.denovo.27, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEBN010000024.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.denovo.27, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-214	100	824/861	ABOEBN010000047.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.guided.32, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEBN010000047.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.guided.32, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEBN010000047.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.guided.32, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOEBN010000049.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.guided.34, whole genome shotgun sequence	76..1221	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOEBN010000025.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.denovo.28, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBN010000045.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.guided.30, whole genome shotgun sequence	2117..3330	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBN010000019.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.denovo.21, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBN010000050.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.guided.35, whole genome shotgun sequence	369..1184	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBN010000019.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.denovo.21, whole genome shotgun sequence	33830..35104	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBN010000048.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.guided.33, whole genome shotgun sequence	136..1410	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncC	100	417 / 417	ABOEBN010000016.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.denovo.17, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBN010000015.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.denovo.16, whole genome shotgun sequence	28779..29038		enterobacteriales	IncX1	98.66	374 / 374	ABOEBN010000015.1 Salmonella enterica strain AG23-0142 SAMN35723249-rid18379913.denovo.16, whole genome shotgun sequence	64633..65006																																									avrA	ABOEBN010000008.1	173549..174417	99.54	870	0						
GCA_032881935.1_PDT001778248.1_genomic.fna	Salmonella_enterica	0.5208	401.713 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	15	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2b,blaCMY-130,blaCMY-153,blaCMY-61,blaCMY-2,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBO010000004.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.04, whole genome shotgun sequence	159441..159878	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBO010000020.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.21, whole genome shotgun sequence	2501..3337	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBO010000020.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.21, whole genome shotgun sequence	3337..4140	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOEBO010000031.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.39, whole genome shotgun sequence	137..952	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	aac(6')-Iaa	98.63	438/438	ABOEBO010000043.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.guided.22, whole genome shotgun sequence	7289..7726	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBO010000045.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.guided.25, whole genome shotgun sequence	4883..5719	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBO010000045.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.guided.25, whole genome shotgun sequence	4080..4883	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOEBO010000049.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.guided.37, whole genome shotgun sequence	127..942	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	blaTEM-214	100	824/861	ABOEBO010000024.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.28, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEBO010000024.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.28, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEBO010000024.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.28, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2b	100	1006/1146	ABOEBO010000028.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.34, whole genome shotgun sequence	1..1006	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	U77414	blaCMY-130	100	1006/1146	ABOEBO010000028.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.34, whole genome shotgun sequence	1..1006	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	KP207589	blaCMY-153	100	1006/1146	ABOEBO010000028.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.34, whole genome shotgun sequence	1..1006	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	MF042206	blaCMY-61	100	1006/1143	ABOEBO010000028.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.34, whole genome shotgun sequence	1..1006	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	JF460795	blaCMY-2	100	1006/1146	ABOEBO010000028.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.34, whole genome shotgun sequence	1..1006	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEBO010000046.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.guided.31, whole genome shotgun sequence	1773..2918	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOEBO010000048.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.guided.35, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEBO010000048.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.guided.35, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEBO010000048.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.guided.35, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABOEBO010000025.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.29, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBO010000047.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.guided.32, whole genome shotgun sequence	1096..2309	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBO010000020.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.21, whole genome shotgun sequence	4201..5016	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBO010000045.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.guided.25, whole genome shotgun sequence	3204..4019	Sulfamethoxazole	AY034138	tet(A)	100	1240/1275	ABOEBO010000020.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.21, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBO010000045.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.guided.25, whole genome shotgun sequence	6980..8254	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																						enterobacteriales	IncC	100	417 / 417	ABOEBO010000016.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.17, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBO010000015.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.16, whole genome shotgun sequence	29581..29840		enterobacteriales	IncX1	98.66	374 / 374	ABOEBO010000015.1 Salmonella enterica strain AG23-0143 SAMN35723250-rid18378313.denovo.16, whole genome shotgun sequence	65435..65808																																									avrA	ABOEBO010000008.1	173549..174417	99.54	870	0						
GCA_032881955.1_PDT001778247.1_genomic.fna	Salmonella_enterica	0.521	363.494 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBQ010000003.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.denovo.03, whole genome shotgun sequence	159441..159878	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBQ010000020.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.denovo.21, whole genome shotgun sequence	31733..32569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBQ010000020.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.denovo.21, whole genome shotgun sequence	30930..31733	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOEBQ010000027.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.denovo.36, whole genome shotgun sequence	137..952	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	V00359	aac(6')-Iaa	98.63	438/438	ABOEBQ010000039.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.guided.24, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBQ010000041.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.guided.29, whole genome shotgun sequence	29..865	Streptomycin	M28829	aph(3')-Ia	100	816/816	ABOEBQ010000046.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.guided.35, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	V00359	aph(3'')-Ib	100	804/804	ABOEBQ010000047.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.guided.37, whole genome shotgun sequence	93..896	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOEBQ010000020.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.denovo.21, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOEBQ010000024.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.denovo.27, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEBQ010000024.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.denovo.27, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEBQ010000024.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.denovo.27, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOEBQ010000042.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.guided.30, whole genome shotgun sequence	1108..2253	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOEBQ010000045.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.guided.34, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEBQ010000045.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.guided.34, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEBQ010000045.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.guided.34, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABOEBQ010000020.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.denovo.21, whole genome shotgun sequence	35705..36918	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBQ010000044.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.guided.33, whole genome shotgun sequence	147..1360	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBQ010000020.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.denovo.21, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBQ010000043.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.guided.31, whole genome shotgun sequence	1862..2677	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBQ010000020.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.denovo.21, whole genome shotgun sequence	33830..35104	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBQ010000041.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.guided.29, whole genome shotgun sequence	2126..3400	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncC	100	417 / 417	ABOEBQ010000017.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.denovo.18, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBQ010000016.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.denovo.17, whole genome shotgun sequence	28779..29038		enterobacteriales	IncX1	98.66	374 / 374	ABOEBQ010000016.1 Salmonella enterica strain AG23-0144 SAMN35723251-rid18379903.denovo.17, whole genome shotgun sequence	64633..65006																																									avrA	ABOEBQ010000007.1	173549..174417	99.54	870	0						
GCA_032881975.1_PDT001778245.1_genomic.fna	Salmonella_enterica	0.521	351.468 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBR010000003.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.denovo.03, whole genome shotgun sequence	159454..159891	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBR010000020.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.denovo.22, whole genome shotgun sequence	2501..3337	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBR010000020.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.denovo.22, whole genome shotgun sequence	3337..4140	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBR010000042.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.guided.21, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	804/804	ABOEBR010000044.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.guided.32, whole genome shotgun sequence	2701..3504	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEBR010000045.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.guided.33, whole genome shotgun sequence	1200..2036	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBR010000045.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.guided.33, whole genome shotgun sequence	397..1200	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOEBR010000020.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.denovo.22, whole genome shotgun sequence	33357..34502	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	823/861	ABOEBR010000028.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.denovo.31, whole genome shotgun sequence	3301..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	823/861	ABOEBR010000028.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.denovo.31, whole genome shotgun sequence	3301..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	823/861	ABOEBR010000028.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.denovo.31, whole genome shotgun sequence	3301..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOEBR010000046.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.guided.34, whole genome shotgun sequence	195..1340	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOEBR010000048.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.guided.36, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEBR010000048.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.guided.36, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEBR010000048.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.guided.36, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABOEBR010000024.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.denovo.27, whole genome shotgun sequence	418..1631	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBR010000047.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.guided.35, whole genome shotgun sequence	243..1456	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBR010000020.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.denovo.22, whole genome shotgun sequence	4201..5016	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBR010000044.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.guided.32, whole genome shotgun sequence	1825..2640	Sulfamethoxazole	AY034138	tet(A)	100	1240/1275	ABOEBR010000020.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.denovo.22, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBR010000049.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.guided.37, whole genome shotgun sequence	26..1300	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1275/1275	ABOEBR010000050.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.guided.38, whole genome shotgun sequence	26..1300	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncC	100	417 / 417	ABOEBR010000018.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.denovo.19, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBR010000016.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.denovo.17, whole genome shotgun sequence	28803..29062		enterobacteriales	IncX1	98.66	374 / 374	ABOEBR010000016.1 Salmonella enterica strain AG23-0146 SAMN35723253-rid18378303.denovo.17, whole genome shotgun sequence	64657..65030																																									avrA	ABOEBR010000007.1	173549..174417	99.54	870	0						
GCA_032881995.1_PDT001778246.1_genomic.fna	Salmonella_enterica	0.521	351.468 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBP010000002.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.denovo.02, whole genome shotgun sequence	159456..159893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBP010000022.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.denovo.23, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBP010000022.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.denovo.23, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBP010000046.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.guided.27, whole genome shotgun sequence	3401..3838	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBP010000047.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.guided.28, whole genome shotgun sequence	6041..6877	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBP010000047.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.guided.28, whole genome shotgun sequence	5238..6041	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOEBP010000022.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.denovo.23, whole genome shotgun sequence	33571..34716	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	823/861	ABOEBP010000029.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.denovo.33, whole genome shotgun sequence	3300..4122	Unknown Beta-lactam	KP050491	blaTEM-206	100	823/861	ABOEBP010000029.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.denovo.33, whole genome shotgun sequence	3300..4122	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	823/861	ABOEBP010000029.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.denovo.33, whole genome shotgun sequence	3300..4122	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOEBP010000049.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.guided.36, whole genome shotgun sequence	17..1162	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOEBP010000050.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.guided.40, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEBP010000050.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.guided.40, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEBP010000050.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.guided.40, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABOEBP010000028.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.denovo.32, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBP010000048.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.guided.34, whole genome shotgun sequence	2382..3595	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBP010000022.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.denovo.23, whole genome shotgun sequence	4415..5230	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBP010000047.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.guided.28, whole genome shotgun sequence	4362..5177	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBP010000022.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.denovo.23, whole genome shotgun sequence	180..1454	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBP010000047.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.guided.28, whole genome shotgun sequence	8138..9412	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncC	100	417 / 417	ABOEBP010000020.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.denovo.21, whole genome shotgun sequence	17855..18271	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBP010000017.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.denovo.17, whole genome shotgun sequence	28803..29062		enterobacteriales	IncX1	98.66	374 / 374	ABOEBP010000017.1 Salmonella enterica strain AG23-0145 SAMN35723252-rid18376833.denovo.17, whole genome shotgun sequence	64657..65030																																									avrA	ABOEBP010000007.1	173549..174417	99.54	870	0						
GCA_032882015.1_PDT001778244.1_genomic.fna	Salmonella_enterica	0.5211	351.468 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBS010000003.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.denovo.03, whole genome shotgun sequence	159456..159893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBS010000021.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.denovo.22, whole genome shotgun sequence	2663..3499	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBS010000021.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.denovo.22, whole genome shotgun sequence	3499..4302	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBS010000045.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.guided.26, whole genome shotgun sequence	412..849	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	837/837	ABOEBS010000047.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.guided.34, whole genome shotgun sequence	141..977	Streptomycin	M28829	aph(6)-Id	100	837/837	ABOEBS010000048.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.guided.35, whole genome shotgun sequence	141..977	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBS010000052.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.guided.39, whole genome shotgun sequence	256..1059	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOEBS010000021.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.denovo.22, whole genome shotgun sequence	33519..34664	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	823/861	ABOEBS010000028.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.denovo.31, whole genome shotgun sequence	3300..4122	Unknown Beta-lactam	KP050491	blaTEM-206	100	823/861	ABOEBS010000028.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.denovo.31, whole genome shotgun sequence	3300..4122	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	823/861	ABOEBS010000028.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.denovo.31, whole genome shotgun sequence	3300..4122	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOEBS010000049.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.guided.36, whole genome shotgun sequence	439..1584	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOEBS010000051.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.guided.38, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEBS010000051.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.guided.38, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEBS010000051.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.guided.38, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABOEBS010000025.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.denovo.28, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBS010000050.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.guided.37, whole genome shotgun sequence	623..1836	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBS010000021.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.denovo.22, whole genome shotgun sequence	4363..5178	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBS010000053.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.guided.40, whole genome shotgun sequence	206..1021	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBS010000021.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.denovo.22, whole genome shotgun sequence	128..1402	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBS010000046.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.guided.33, whole genome shotgun sequence	1739..3013	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																									enterobacteriales	IncC	100	417 / 417	ABOEBS010000019.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.denovo.20, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBS010000016.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.denovo.17, whole genome shotgun sequence	28813..29072		enterobacteriales	IncX1	98.66	374 / 374	ABOEBS010000016.1 Salmonella enterica strain AG23-0147 SAMN35723254-rid18378293.denovo.17, whole genome shotgun sequence	64667..65040																																									avrA	ABOEBS010000007.1	173549..174417	99.54	870	0						
GCA_032882035.1_PDT001778242.1_genomic.fna	Salmonella_enterica	0.521	363.494 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBU010000003.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.denovo.03, whole genome shotgun sequence	159429..159866	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBU010000019.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.denovo.19, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBU010000019.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.denovo.19, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEBU010000039.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.guided.20, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBU010000039.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.guided.20, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBU010000041.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.guided.25, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOEBU010000019.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.denovo.19, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEBU010000039.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.guided.20, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOEBU010000019.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.denovo.19, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBU010000043.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBU010000019.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.denovo.19, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBU010000039.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.guided.20, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBU010000019.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.denovo.19, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBU010000039.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.guided.20, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOEBU010000022.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.denovo.24, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBU010000016.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.denovo.16, whole genome shotgun sequence	29363..29622		enterobacteriales	IncX1	98.66	374 / 374	ABOEBU010000016.1 Salmonella enterica strain AG23-0149 SAMN35723256-rid18379893.denovo.16, whole genome shotgun sequence	65217..65590																																									avrA	ABOEBU010000007.1	173549..174417	99.54	870	0						
GCA_032882055.1_PDT001778240.1_genomic.fna	Salmonella_enterica	0.5211	327.339 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBW010000002.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.denovo.02, whole genome shotgun sequence	159430..159867	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBW010000021.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.denovo.21, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBW010000021.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.denovo.21, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEBW010000041.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.guided.23, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBW010000041.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.guided.23, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBW010000043.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.guided.27, whole genome shotgun sequence	5392..5829	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOEBW010000021.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.denovo.21, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEBW010000041.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.guided.23, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOEBW010000021.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.denovo.21, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBW010000045.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.guided.32, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBW010000021.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.denovo.21, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBW010000041.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.guided.23, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBW010000021.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.denovo.21, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBW010000041.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.guided.23, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOEBW010000022.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.denovo.22, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBW010000017.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.denovo.17, whole genome shotgun sequence	29363..29622		enterobacteriales	IncX1	98.66	374 / 374	ABOEBW010000017.1 Salmonella enterica strain AG23-0125 SAMN35723233-rid18379883.denovo.17, whole genome shotgun sequence	65217..65590																																									avrA	ABOEBW010000006.1	173549..174417	99.54	870	0						
GCA_032882075.1_PDT001778241.1_genomic.fna	Salmonella_enterica	0.521	363.951 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aph(3'')-Ib,blaCMY-2b,blaCMY-61,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBV010000002.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.denovo.02, whole genome shotgun sequence	159455..159892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBV010000020.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.denovo.20, whole genome shotgun sequence	6936..7772	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBV010000020.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.denovo.20, whole genome shotgun sequence	7772..8575	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBV010000041.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.guided.25, whole genome shotgun sequence	1863..2300	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	804/804	ABOEBV010000042.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.guided.27, whole genome shotgun sequence	4466..5269	Streptomycin	AF321551	aph(6)-Id	100	801/837	ABOEBV010000042.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.guided.27, whole genome shotgun sequence	5269..6069	Streptomycin	M28829	aph(6)-Id	100	837/837	ABOEBV010000046.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.guided.34, whole genome shotgun sequence	915..1751	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBV010000046.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.guided.34, whole genome shotgun sequence	112..915	Streptomycin	AF321551	blaCMY-2b	100	1082/1146	ABOEBV010000027.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.denovo.35, whole genome shotgun sequence	1..1082	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	U77414	blaCMY-61	100	1082/1143	ABOEBV010000027.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.denovo.35, whole genome shotgun sequence	1..1082	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	JF460795	blaCMY-2	100	1082/1146	ABOEBV010000027.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.denovo.35, whole genome shotgun sequence	1..1082	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEBV010000044.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.guided.31, whole genome shotgun sequence	1776..2921	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOEBV010000020.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.denovo.20, whole genome shotgun sequence	2587..3800	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBV010000043.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.guided.29, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBV010000020.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.denovo.20, whole genome shotgun sequence	8636..9451	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBV010000042.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.guided.27, whole genome shotgun sequence	3590..4405	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBV010000020.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.denovo.20, whole genome shotgun sequence	4401..5675	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBV010000045.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.guided.32, whole genome shotgun sequence	1296..2570	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncC	100	417 / 417	ABOEBV010000019.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.denovo.19, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBV010000016.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.denovo.16, whole genome shotgun sequence	29345..29604		enterobacteriales	IncX1	98.66	374 / 374	ABOEBV010000016.1 Salmonella enterica strain AG23-0124 SAMN35723232-rid18378273.denovo.16, whole genome shotgun sequence	65199..65572																																									avrA	ABOEBV010000007.1	173549..174417	99.54	870	0						
GCA_032882095.1_PDT001778243.1_genomic.fna	Salmonella_enterica	0.5209	327.339 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.S83F	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBT010000002.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.denovo.02, whole genome shotgun sequence	159453..159890	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBT010000021.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.denovo.22, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBT010000021.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.denovo.22, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEBT010000040.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.guided.23, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBT010000040.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.guided.23, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBT010000041.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.guided.26, whole genome shotgun sequence	10415..10852	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOEBT010000021.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.denovo.22, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOEBT010000026.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.denovo.30, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEBT010000026.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.denovo.30, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEBT010000026.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.denovo.30, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOEBT010000040.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.guided.23, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOEBT010000044.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.guided.33, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEBT010000044.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.guided.33, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEBT010000044.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.guided.33, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABOEBT010000021.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.denovo.22, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBT010000043.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBT010000021.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.denovo.22, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBT010000040.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.guided.23, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBT010000021.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.denovo.22, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBT010000040.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.guided.23, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																												gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABOEBT010000019.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.denovo.20, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBT010000017.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.denovo.17, whole genome shotgun sequence	29625..29884		enterobacteriales	IncX1	98.66	374 / 374	ABOEBT010000017.1 Salmonella enterica strain AG23-0148 SAMN35723255-rid18378283.denovo.17, whole genome shotgun sequence	65479..65852																																									avrA	ABOEBT010000006.1	173549..174417	99.54	870	0						
GCA_032882115.1_PDT001778238.1_genomic.fna	Salmonella_enterica	0.521	327.339 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBY010000002.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.denovo.02, whole genome shotgun sequence	159428..159865	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBY010000021.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.denovo.21, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBY010000021.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.denovo.21, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEBY010000038.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.guided.23, whole genome shotgun sequence	440..1276	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBY010000038.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.guided.23, whole genome shotgun sequence	1276..2079	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBY010000040.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.guided.28, whole genome shotgun sequence	2765..3202	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOEBY010000021.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.denovo.21, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEBY010000038.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.guided.23, whole genome shotgun sequence	31296..32441	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOEBY010000021.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.denovo.21, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBY010000041.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBY010000021.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.denovo.21, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBY010000038.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.guided.23, whole genome shotgun sequence	2140..2955	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBY010000021.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.denovo.21, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBY010000043.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.guided.34, whole genome shotgun sequence	821..2095	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOEBY010000022.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.denovo.22, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBY010000017.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.denovo.17, whole genome shotgun sequence	29363..29622		enterobacteriales	IncX1	98.66	374 / 374	ABOEBY010000017.1 Salmonella enterica strain AG23-0127 SAMN35723235-rid18378263.denovo.17, whole genome shotgun sequence	65217..65590																																									avrA	ABOEBY010000006.1	173549..174417	99.54	870	0						
GCA_032882135.1_PDT001778239.1_genomic.fna	Salmonella_enterica	0.521	351.48 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEBX010000002.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.denovo.02, whole genome shotgun sequence	159429..159866	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEBX010000021.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.denovo.21, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBX010000021.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.denovo.21, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEBX010000041.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.guided.23, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEBX010000041.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.guided.23, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEBX010000045.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.guided.38, whole genome shotgun sequence	161..598	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOEBX010000021.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.denovo.21, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEBX010000041.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.guided.23, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOEBX010000021.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.denovo.21, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEBX010000044.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEBX010000021.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.denovo.21, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEBX010000041.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.guided.23, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEBX010000021.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.denovo.21, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEBX010000041.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.guided.23, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOEBX010000022.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.denovo.22, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEBX010000017.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.denovo.17, whole genome shotgun sequence	29363..29622		enterobacteriales	IncX1	98.66	374 / 374	ABOEBX010000017.1 Salmonella enterica strain AG23-0126 SAMN35723234-rid18379873.denovo.17, whole genome shotgun sequence	65217..65590																																									avrA	ABOEBX010000006.1	173549..174417	99.54	870	0						
GCA_032882155.1_PDT001948651.1_genomic.fna	Salmonella_enterica	0.5216	279.776 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOECA010000001.1 Salmonella enterica strain PNUSAS393785 SAMN37898915-rid19914133.denovo.01, whole genome shotgun sequence	145191..145628	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOECA010000050.1 Salmonella enterica strain PNUSAS393785 SAMN37898915-rid19914133.guided.30, whole genome shotgun sequence	17646..18083	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOECA010000002.1	515390..516259	99.885	870	0						
GCA_032882175.1_PDT001948650.1_genomic.fna	Salmonella_enterica	0.5208	225.939 KB	7	aroC_11,dnaN_10,hemD_25,hisD_1003*,purE_10,sucA_35,thrA_4	4599*	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	99.8003992015968	100	hisD_1003*	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOEBZ010000001.1 Salmonella enterica strain PNUSAS393759 SAMN37898844-rid19914123.denovo.01, whole genome shotgun sequence	580000..580437	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOEBZ010000061.1 Salmonella enterica strain PNUSAS393759 SAMN37898844-rid19914123.guided.29, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOEBZ010000019.1 Salmonella enterica strain PNUSAS393759 SAMN37898844-rid19914123.denovo.19, whole genome shotgun sequence	77126..77768																																																																	
GCA_032882195.1_PDT001948648.1_genomic.fna	Salmonella_enterica	0.5216	307.243 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX3(pEC14)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOECB010000003.1 Salmonella enterica strain PNUSAS393733 SAMN37898903-rid19914103.denovo.03, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOECB010000040.1 Salmonella enterica strain PNUSAS393733 SAMN37898903-rid19914103.guided.31, whole genome shotgun sequence	8689..9126	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX3(pEC14)	94.39	374 / 374	ABOECB010000024.1 Salmonella enterica strain PNUSAS393733 SAMN37898903-rid19914103.denovo.24, whole genome shotgun sequence	25358..25731																																																						avrA	ABOECB010000002.1	120799..121668	99.31	870	0						
GCA_032882215.1_PDT001948646.1_genomic.fna	Salmonella_enterica	0.5167	246.066 KB	7	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABOECC010000009.1 Salmonella enterica strain PNUSAS393779 SAMN37898885-rid19914083.denovo.09, whole genome shotgun sequence	7116..7553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABOECC010000067.1 Salmonella enterica strain PNUSAS393779 SAMN37898885-rid19914083.guided.52, whole genome shotgun sequence	108..545	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABOECC010000013.1 Salmonella enterica strain PNUSAS393779 SAMN37898885-rid19914083.denovo.13, whole genome shotgun sequence	117017..117659	enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABOECC010000033.1 Salmonella enterica strain PNUSAS393779 SAMN37898885-rid19914083.denovo.33, whole genome shotgun sequence	8801..9393																																																											
GCA_032882235.1_PDT001948642.1_genomic.fna	Salmonella_enterica	0.5217	340.375 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOECD010000001.1 Salmonella enterica strain PNUSAS393790 SAMN37898902-rid19914043.denovo.01, whole genome shotgun sequence	625181..625618	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOECD010000048.1 Salmonella enterica strain PNUSAS393790 SAMN37898902-rid19914043.guided.34, whole genome shotgun sequence	2365..2802	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOECD010000031.1 Salmonella enterica strain PNUSAS393790 SAMN37898902-rid19914043.denovo.33, whole genome shotgun sequence	4532..5174	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOECD010000025.1 Salmonella enterica strain PNUSAS393790 SAMN37898902-rid19914043.denovo.26, whole genome shotgun sequence	10978..11204																																																											
GCA_032882255.1_PDT001948641.1_genomic.fna	Salmonella_enterica	0.5215	222.985 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOECE010000002.1 Salmonella enterica strain PNUSAS393797 SAMN37898859-rid19914033.denovo.02, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOECE010000059.1 Salmonella enterica strain PNUSAS393797 SAMN37898859-rid19914033.guided.34, whole genome shotgun sequence	6841..7278	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOECE010000016.1 Salmonella enterica strain PNUSAS393797 SAMN37898859-rid19914033.denovo.16, whole genome shotgun sequence	14096..14738	enterobacteriales	IncFII(S)	100	262 / 262	ABOECE010000016.1 Salmonella enterica strain PNUSAS393797 SAMN37898859-rid19914033.denovo.16, whole genome shotgun sequence	29823..30084		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOECE010000017.1 Salmonella enterica strain PNUSAS393797 SAMN37898859-rid19914033.denovo.17, whole genome shotgun sequence	70673..70814																																									avrA	ABOECE010000003.1	174513..175381	100	869	0						
GCA_032882275.1_PDT001948632.1_genomic.fna	Salmonella_enterica	0.5214	304.075 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOECH010000001.1 Salmonella enterica strain PNUSAS393749 SAMN37898893-rid19913943.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOECH010000029.1 Salmonella enterica strain PNUSAS393749 SAMN37898893-rid19913943.guided.20, whole genome shotgun sequence	7165..7602	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOECH010000017.1 Salmonella enterica strain PNUSAS393749 SAMN37898893-rid19913943.denovo.17, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOECH010000017.1 Salmonella enterica strain PNUSAS393749 SAMN37898893-rid19913943.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABOECH010000002.1	553381..554250	99.54	870	0						
GCA_032882295.1_PDT001948638.1_genomic.fna	Salmonella_enterica	0.5213	588.177 KB	4	aroC_5,dnaN_75,hemD_8,hisD_96,purE_39,sucA_146,thrA_97	443	35:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_75	hemD	100	100	hemD_8	hisD	100	100	hisD_96	purE	100	100	purE_39	sucA	100	100	sucA_146	thrA	100	100	thrA_97	35	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Monschaui		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOECG010000001.1 Salmonella enterica strain PNUSAS393735 SAMN37898880-rid19914003.denovo.01, whole genome shotgun sequence	143378..143815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOECG010000028.1 Salmonella enterica strain PNUSAS393735 SAMN37898880-rid19914003.guided.21, whole genome shotgun sequence	4297..4734	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032882315.1_PDT001948636.1_genomic.fna	Salmonella_enterica	0.5218	281.188 KB	5	aroC_127,dnaN_81,hemD_111,hisD_564,purE_39,sucA_226,thrA_41	2225	13:b:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_127	dnaN	100	100	dnaN_81	hemD	100	100	hemD_111	hisD	100	100	hisD_564	purE	100	100	purE_39	sucA	100	100	sucA_226	thrA	100	100	thrA_41	13	b	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Durham		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOECF010000001.1 Salmonella enterica strain PNUSAS393774 SAMN37898883-rid19913983.denovo.01, whole genome shotgun sequence	307628..308065	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOECF010000040.1 Salmonella enterica strain PNUSAS393774 SAMN37898883-rid19913983.guided.29, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOECF010000003.1	39404..40273	98.966	870	0						
GCA_032882335.1_PDT001948629.1_genomic.fna	Salmonella_enterica	0.5207	480.087 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOECI010000007.1 Salmonella enterica strain PNUSAS393742 SAMN37898890-rid19913913.denovo.07, whole genome shotgun sequence	163066..163503	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOECI010000026.1 Salmonella enterica strain PNUSAS393742 SAMN37898890-rid19913913.guided.22, whole genome shotgun sequence	13801..14238	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOECI010000014.1 Salmonella enterica strain PNUSAS393742 SAMN37898890-rid19913913.denovo.14, whole genome shotgun sequence	34958..35491																																																						avrA	ABOECI010000001.1	544156..545024	99.425	870	0						
GCA_032882355.1_PDT001948628.1_genomic.fna	Salmonella_enterica	0.5207	229.47 KB	6	aroC_72,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2009	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_72	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOECJ010000001.1 Salmonella enterica strain PNUSAS393740 SAMN37898887-rid19913903.denovo.01, whole genome shotgun sequence	167933..168370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOECJ010000041.1 Salmonella enterica strain PNUSAS393740 SAMN37898887-rid19913903.guided.22, whole genome shotgun sequence	13870..14307	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOECJ010000002.1	93969..94838	99.31	870	0						
GCA_032882375.1_PDT001948627.1_genomic.fna	Salmonella_enterica	0.5205	200.105 KB	6	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(Yp),IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOECK010000001.1 Salmonella enterica strain PNUSAS393802 SAMN37898877-rid19913893.denovo.01, whole genome shotgun sequence	625246..625683	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOECK010000048.1 Salmonella enterica strain PNUSAS393802 SAMN37898877-rid19913893.guided.32, whole genome shotgun sequence	1897..2334	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOECK010000036.1 Salmonella enterica strain PNUSAS393802 SAMN37898877-rid19913893.denovo.38, whole genome shotgun sequence	5514..6156	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOECK010000034.1 Salmonella enterica strain PNUSAS393802 SAMN37898877-rid19913893.denovo.36, whole genome shotgun sequence	10976..11202		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOECK010000022.1 Salmonella enterica strain PNUSAS393802 SAMN37898877-rid19913893.denovo.23, whole genome shotgun sequence	33036..33177																																																				
GCA_032882395.1_PDT001948626.1_genomic.fna	Salmonella_enterica	0.5187	326.953 KB	6	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pCRY),IncX3(pEC14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOECL010000004.1 Salmonella enterica strain PNUSAS393731 SAMN37898874-rid19913883.denovo.04, whole genome shotgun sequence	83341..83778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOECL010000063.1 Salmonella enterica strain PNUSAS393731 SAMN37898874-rid19913883.guided.31, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABOECL010000032.1 Salmonella enterica strain PNUSAS393731 SAMN37898874-rid19913883.denovo.34, whole genome shotgun sequence	21066..21658	enterobacteriales	IncX3(pEC14)	93.58	374 / 374	ABOECL010000027.1 Salmonella enterica strain PNUSAS393731 SAMN37898874-rid19913883.denovo.28, whole genome shotgun sequence	35268..35641																																																											
GCA_032882415.1_PDT001948625.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOECM010000001.1 Salmonella enterica strain PNUSAS393763 SAMN37898872-rid19913873.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOECM010000026.1 Salmonella enterica strain PNUSAS393763 SAMN37898872-rid19913873.guided.19, whole genome shotgun sequence	9239..9676	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOECM010000015.1 Salmonella enterica strain PNUSAS393763 SAMN37898872-rid19913873.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOECM010000015.1 Salmonella enterica strain PNUSAS393763 SAMN37898872-rid19913873.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOECM010000002.1	553077..553946	99.54	870	0						
GCA_032882435.1_PDT001948624.1_genomic.fna	Salmonella_enterica	0.5215	423.996 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOECN010000002.1 Salmonella enterica strain PNUSAS393806 SAMN37898875-rid19913863.denovo.02, whole genome shotgun sequence	136212..136649	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOECN010000043.1 Salmonella enterica strain PNUSAS393806 SAMN37898875-rid19913863.guided.14, whole genome shotgun sequence	44320..44757	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOECN010000001.1	446323..447192	99.655	870	0						
GCA_032882455.1_PDT001948620.1_genomic.fna	Salmonella_enterica	0.5212	225.124 KB	6	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOECQ010000001.1 Salmonella enterica strain PNUSAS393791 SAMN37898860-rid19913823.denovo.01, whole genome shotgun sequence	239427..239864	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOECQ010000047.1 Salmonella enterica strain PNUSAS393791 SAMN37898860-rid19913823.guided.34, whole genome shotgun sequence	5285..5722	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOECQ010000034.1 Salmonella enterica strain PNUSAS393791 SAMN37898860-rid19913823.denovo.36, whole genome shotgun sequence	4506..5148	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOECQ010000029.1 Salmonella enterica strain PNUSAS393791 SAMN37898860-rid19913823.denovo.30, whole genome shotgun sequence	10978..11204																																																											
GCA_032882475.1_PDT001948617.1_genomic.fna	Salmonella_enterica	0.5213	475.197 KB	4	aroC_186,dnaN_35,hemD_78,hisD_510,purE_39,sucA_182,thrA_435	1621	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_186	dnaN	100	100	dnaN_35	hemD	100	100	hemD_78	hisD	100	100	hisD_510	purE	100	100	purE_39	sucA	100	100	sucA_182	thrA	100	100	thrA_435	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOECP010000001.1 Salmonella enterica strain PNUSAS393808 SAMN37898835-rid19913793.denovo.01, whole genome shotgun sequence	155124..155561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABOECP010000023.1 Salmonella enterica strain PNUSAS393808 SAMN37898835-rid19913793.guided.14, whole genome shotgun sequence	16432..16869	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOECP010000008.1	51230..52099	99.54	870	0						
GCA_032882495.1_PDT001948623.1_genomic.fna	Salmonella_enterica	0.521	284.248 KB	5	aroC_11,dnaN_10*,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126*	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	99.8003992015968	100	dnaN_10*	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOECO010000001.1 Salmonella enterica strain PNUSAS393771 SAMN37898846-rid19913853.denovo.01, whole genome shotgun sequence	380929..381366	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOECO010000046.1 Salmonella enterica strain PNUSAS393771 SAMN37898846-rid19913853.guided.29, whole genome shotgun sequence	7442..7879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOECO010000017.1 Salmonella enterica strain PNUSAS393771 SAMN37898846-rid19913853.denovo.17, whole genome shotgun sequence	57923..58565	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOECO010000028.1 Salmonella enterica strain PNUSAS393771 SAMN37898846-rid19913853.denovo.28, whole genome shotgun sequence	10978..11204																																																											
GCA_032882515.1_PDT001948614.1_genomic.fna	Salmonella_enterica	0.521	522.67 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOECR010000001.1 Salmonella enterica strain PNUSAS393795 SAMN37898852-rid19913763.denovo.01, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOECR010000020.1 Salmonella enterica strain PNUSAS393795 SAMN37898852-rid19913763.guided.18, whole genome shotgun sequence	80..517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOECR010000002.1	160333..161202	99.54	870	0						
GCA_032882535.1_PDT001948612.1_genomic.fna	Salmonella_enterica	0.5224	377.149 KB	5	aroC_347,dnaN_394,hemD_78,hisD_496,purE_426,sucA_9,thrA_102	1549	8:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_347	dnaN	100	100	dnaN_394	hemD	100	100	hemD_78	hisD	100	100	hisD_496	purE	100	100	purE_426	sucA	100	100	sucA_9	thrA	100	100	thrA_102	8	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Altona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOECS010000005.1 Salmonella enterica strain PNUSAS393769 SAMN37898838-rid19913743.denovo.05, whole genome shotgun sequence	140260..140697	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOECS010000038.1 Salmonella enterica strain PNUSAS393769 SAMN37898838-rid19913743.guided.27, whole genome shotgun sequence	16433..16870	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOECS010000003.1	401164..402033	99.195	870	0						
GCA_032882555.1_PDT001948608.1_genomic.fna	Salmonella_enterica	0.5219	428.841 KB	5	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOECT010000008.1 Salmonella enterica strain PNUSAS393794 SAMN37898848-rid19913703.denovo.08, whole genome shotgun sequence	145366..145803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOECT010000033.1 Salmonella enterica strain PNUSAS393794 SAMN37898848-rid19913703.guided.24, whole genome shotgun sequence	4135..4572	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOECT010000026.1 Salmonella enterica strain PNUSAS393794 SAMN37898848-rid19913703.denovo.30, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOECT010000035.1 Salmonella enterica strain PNUSAS393794 SAMN37898848-rid19913703.guided.29, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOECT010000026.1 Salmonella enterica strain PNUSAS393794 SAMN37898848-rid19913703.denovo.30, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOECT010000035.1 Salmonella enterica strain PNUSAS393794 SAMN37898848-rid19913703.guided.29, whole genome shotgun sequence	2044..2174																																																avrA	ABOECT010000001.1	553051..553920	99.77	870	0						
GCA_032882575.1_PDT001948602.1_genomic.fna	Salmonella_enterica	0.5211	421.395 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOECV010000001.1 Salmonella enterica strain PNUSAS393768 SAMN37898723-rid19913643.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOECV010000025.1 Salmonella enterica strain PNUSAS393768 SAMN37898723-rid19913643.guided.17, whole genome shotgun sequence	5701..6138	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOECV010000014.1 Salmonella enterica strain PNUSAS393768 SAMN37898723-rid19913643.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOECV010000014.1 Salmonella enterica strain PNUSAS393768 SAMN37898723-rid19913643.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOECV010000002.1	553077..553946	99.54	870	0						
GCA_032882595.1_PDT001948606.1_genomic.fna	Salmonella_enterica	0.5159	340.8 KB	6	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABOECU010000001.1 Salmonella enterica strain PNUSAS393724 SAMN37898837-rid19913683.denovo.01, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABOECU010000047.1 Salmonella enterica strain PNUSAS393724 SAMN37898837-rid19913683.guided.30, whole genome shotgun sequence	4349..4786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032882615.1_PDT001948599.1_genomic.fna	Salmonella_enterica	0.5219	496.849 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOECW010000002.1 Salmonella enterica strain PNUSAS393770 SAMN37898724-rid19913613.denovo.02, whole genome shotgun sequence	116037..116474	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOECW010000028.1 Salmonella enterica strain PNUSAS393770 SAMN37898724-rid19913613.guided.14, whole genome shotgun sequence	12663..13100	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOECW010000001.1	213136..214005	98.966	870	0						
GCA_032882635.1_PDT001948597.1_genomic.fna	Salmonella_enterica	0.5209	586.775 KB	3	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOECX010000001.1 Salmonella enterica strain PNUSAS393765 SAMN37898720-rid19913593.denovo.01, whole genome shotgun sequence	635626..636063	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOECX010000023.1 Salmonella enterica strain PNUSAS393765 SAMN37898720-rid19913593.guided.11, whole genome shotgun sequence	14352..14789	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOECX010000003.1	95261..96130	99.54	870	0						
GCA_032882655.1_PDT001948595.1_genomic.fna	Salmonella_enterica	0.5208	525.824 KB	3	aroC_595,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	2870	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_595	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOECZ010000001.1 Salmonella enterica strain PNUSAS393766 SAMN37898716-rid19913573.denovo.01, whole genome shotgun sequence	1349621..1350058	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOECZ010000031.1 Salmonella enterica strain PNUSAS393766 SAMN37898716-rid19913573.guided.16, whole genome shotgun sequence	26980..27417	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOECZ010000017.1 Salmonella enterica strain PNUSAS393766 SAMN37898716-rid19913573.denovo.19, whole genome shotgun sequence	11459..12101																																																						avrA	ABOECZ010000004.1	140124..140993	99.425	870	0						
GCA_032882675.1_PDT001948596.1_genomic.fna	Salmonella_enterica	0.5208	522.704 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOECY010000001.1 Salmonella enterica strain PNUSAS393753 SAMN37898714-rid19913583.denovo.01, whole genome shotgun sequence	272726..273163	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOECY010000022.1 Salmonella enterica strain PNUSAS393753 SAMN37898714-rid19913583.guided.15, whole genome shotgun sequence	17555..17992	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOECY010000003.1	548111..548980	99.54	870	0						
GCA_032882695.1_PDT001948593.1_genomic.fna	Salmonella_enterica	0.5213	225.124 KB	6	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOEDA010000001.1 Salmonella enterica strain PNUSAS393746 SAMN37898718-rid19913553.denovo.01, whole genome shotgun sequence	232860..233297	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOEDA010000058.1 Salmonella enterica strain PNUSAS393746 SAMN37898718-rid19913553.guided.31, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOEDA010000032.1 Salmonella enterica strain PNUSAS393746 SAMN37898718-rid19913553.denovo.34, whole genome shotgun sequence	5514..6156	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOEDA010000029.1 Salmonella enterica strain PNUSAS393746 SAMN37898718-rid19913553.denovo.30, whole genome shotgun sequence	10978..11204																																																											
GCA_032882715.1_PDT001948592.1_genomic.fna	Salmonella_enterica	0.5221	441.181 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEDB010000002.1 Salmonella enterica strain PNUSAS393772 SAMN37898717-rid19913543.denovo.02, whole genome shotgun sequence	145381..145818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOEDB010000024.1 Salmonella enterica strain PNUSAS393772 SAMN37898717-rid19913543.guided.17, whole genome shotgun sequence	1734..2171	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEDB010000004.1	400720..401589	99.77	870	0						
GCA_032882735.1_PDT001948591.1_genomic.fna	Salmonella_enterica	0.521	709.31 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOEDC010000001.1 Salmonella enterica strain PNUSAS393764 SAMN37898722-rid19913533.denovo.01, whole genome shotgun sequence	272986..273423	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOEDC010000020.1 Salmonella enterica strain PNUSAS393764 SAMN37898722-rid19913533.guided.14, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEDC010000003.1	160331..161200	99.54	870	0						
GCA_032882755.1_PDT001948589.1_genomic.fna	Salmonella_enterica	0.5157	245.882 KB	7	aroC_483,dnaN_28,hemD_355,hisD_454,purE_22,sucA_29,thrA_30	2505	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABOEDE010000006.1 Salmonella enterica strain PNUSAS393762 SAMN37898707-rid19913513.denovo.06, whole genome shotgun sequence	99038..99475	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABOEDE010000085.1 Salmonella enterica strain PNUSAS393762 SAMN37898707-rid19913513.guided.22, whole genome shotgun sequence	4405..4842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032882775.1_PDT001948590.1_genomic.fna	Salmonella_enterica	0.5205	238.803 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		3	Col440I,ColRNAI,IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEDD010000002.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.denovo.02, whole genome shotgun sequence	145234..145671	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOEDD010000043.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.denovo.47, whole genome shotgun sequence	555..1370	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(6)-Id	100	837/837	ABOEDD010000046.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.denovo.52, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEDD010000046.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.denovo.52, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOEDD010000062.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.guided.38, whole genome shotgun sequence	10589..11026	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOEDD010000064.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.guided.48, whole genome shotgun sequence	3162..3977	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(6)-Id	100	837/837	ABOEDD010000065.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.guided.49, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEDD010000065.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.guided.49, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOEDD010000051.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.denovo.58, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOEDD010000066.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.guided.57, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOEDD010000046.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.denovo.52, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOEDD010000065.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.guided.49, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOEDD010000035.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.denovo.37, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOEDD010000061.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.guided.36, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col440I	94.59	111 / 114	ABOEDD010000045.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.denovo.51, whole genome shotgun sequence	3175..3285	enterobacteriales	ColRNAI	90.91	132 / 130	ABOEDD010000050.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.denovo.56, whole genome shotgun sequence	320..450		enterobacteriales	IncX1	98.93	374 / 374	ABOEDD010000029.1 Salmonella enterica strain PNUSAS393750 SAMN37898713-rid19913523.denovo.30, whole genome shotgun sequence	32399..32772																																									avrA	ABOEDD010000001.1	515229..516098	99.885	870	0						
GCA_032882795.1_PDT001948588.1_genomic.fna	Salmonella_enterica	0.5221	393.811 KB	5	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEDF010000004.1 Salmonella enterica strain PNUSAS393748 SAMN37898712-rid19913503.denovo.04, whole genome shotgun sequence	268995..269432	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOEDF010000025.1 Salmonella enterica strain PNUSAS393748 SAMN37898712-rid19913503.guided.18, whole genome shotgun sequence	3333..3770	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEDF010000001.1	504717..505586	99.77	870	0						
GCA_032882815.1_PDT001948587.1_genomic.fna	Salmonella_enterica	0.5222	755.252 KB	2	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEDG010000001.1 Salmonella enterica strain PNUSAS393758 SAMN37898709-rid19913493.denovo.01, whole genome shotgun sequence	1368603..1369040	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOEDG010000020.1 Salmonella enterica strain PNUSAS393758 SAMN37898709-rid19913493.guided.12, whole genome shotgun sequence	12996..13433	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEDG010000003.1	400982..401840	98.506	870	0						
GCA_032882835.1_PDT001948586.1_genomic.fna	Salmonella_enterica	0.5208	238.42 KB	8	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOEDH010000008.1 Salmonella enterica strain PNUSAS393754 SAMN37898704-rid19913483.denovo.08, whole genome shotgun sequence	94910..95347	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOEDH010000087.1 Salmonella enterica strain PNUSAS393754 SAMN37898704-rid19913483.guided.33, whole genome shotgun sequence	4346..4783	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABOEDH010000029.1 Salmonella enterica strain PNUSAS393754 SAMN37898704-rid19913483.denovo.30, whole genome shotgun sequence	12696..13338	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABOEDH010000028.1 Salmonella enterica strain PNUSAS393754 SAMN37898704-rid19913483.denovo.29, whole genome shotgun sequence	21066..21658																																																avrA	ABOEDH010000010.1	160558..161426	99.425	870	0						
GCA_032882845.1_PDT001948582.1_genomic.fna	Salmonella_enterica	0.5209	366.629 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEDJ010000001.1 Salmonella enterica strain PNUSAS393720 SAMN37898702-rid19913443.denovo.01, whole genome shotgun sequence	443031..443468	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEDJ010000046.1 Salmonella enterica strain PNUSAS393720 SAMN37898702-rid19913443.guided.19, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABOEDJ010000027.1 Salmonella enterica strain PNUSAS393720 SAMN37898702-rid19913443.denovo.30, whole genome shotgun sequence	4021..4151																																																						avrA	ABOEDJ010000008.1	225623..226491	99.195	870	0						
GCA_032882875.1_PDT001948581.1_genomic.fna	Salmonella_enterica	0.5208	183.594 KB	10	aroC_46,dnaN_55,hemD_23,hisD_14,purE_16,sucA_54,thrA_56	135	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_55	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_54	thrA	100	100	thrA_56	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEDK010000005.1 Salmonella enterica strain PNUSAS393723 SAMN37898703-rid19913433.denovo.05, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEDK010000047.1 Salmonella enterica strain PNUSAS393723 SAMN37898703-rid19913433.guided.27, whole genome shotgun sequence	26244..26681	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEDK010000009.1	39496..40366	99.311	871	0						
GCA_032882895.1_PDT001948580.1_genomic.fna	Salmonella_enterica	0.5208	692.146 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOEDL010000001.1 Salmonella enterica strain PNUSAS393757 SAMN37898710-rid19913423.denovo.01, whole genome shotgun sequence	799670..800107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOEDL010000019.1 Salmonella enterica strain PNUSAS393757 SAMN37898710-rid19913423.guided.14, whole genome shotgun sequence	6964..7401	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEDL010000002.1	160335..161204	99.54	870	0						
GCA_032882915.1_PDT001778236.1_genomic.fna	Salmonella_enterica	0.521	351.48 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEDN010000002.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.denovo.02, whole genome shotgun sequence	159453..159890	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEDN010000020.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.denovo.20, whole genome shotgun sequence	31732..32568	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEDN010000020.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.denovo.20, whole genome shotgun sequence	30929..31732	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEDN010000038.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.guided.22, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEDN010000038.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.guided.22, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEDN010000041.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.guided.28, whole genome shotgun sequence	385..822	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOEDN010000020.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.denovo.20, whole genome shotgun sequence	567..1712	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEDN010000038.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.guided.22, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOEDN010000020.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.denovo.20, whole genome shotgun sequence	35704..36917	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEDN010000042.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.guided.30, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEDN010000020.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.denovo.20, whole genome shotgun sequence	30053..30868	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEDN010000038.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.guided.22, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEDN010000020.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.denovo.20, whole genome shotgun sequence	33829..35103	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEDN010000038.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.guided.22, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOEDN010000021.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.denovo.21, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEDN010000016.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.denovo.16, whole genome shotgun sequence	29334..29593		enterobacteriales	IncX1	98.66	374 / 374	ABOEDN010000016.1 Salmonella enterica strain AG23-0129 SAMN35723237-rid18376823.denovo.16, whole genome shotgun sequence	65188..65561																																									avrA	ABOEDN010000007.1	173549..174417	99.54	870	0						
GCA_032882935.1_PDT001778237.1_genomic.fna	Salmonella_enterica	0.521	327.339 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEDM010000002.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.denovo.02, whole genome shotgun sequence	159429..159866	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEDM010000021.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.denovo.21, whole genome shotgun sequence	31733..32569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEDM010000021.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.denovo.21, whole genome shotgun sequence	30930..31733	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEDM010000043.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.guided.23, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEDM010000043.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.guided.23, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	99.23	392/438	ABOEDM010000046.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.guided.30, whole genome shotgun sequence	1..392	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOEDM010000021.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.denovo.21, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEDM010000043.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.guided.23, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOEDM010000021.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.denovo.21, whole genome shotgun sequence	35705..36918	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEDM010000047.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEDM010000021.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.denovo.21, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEDM010000043.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.guided.23, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEDM010000021.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.denovo.21, whole genome shotgun sequence	33830..35104	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEDM010000043.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.guided.23, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOEDM010000022.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.denovo.22, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEDM010000017.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.denovo.17, whole genome shotgun sequence	29363..29622		enterobacteriales	IncX1	98.66	374 / 374	ABOEDM010000017.1 Salmonella enterica strain AG23-0128 SAMN35723236-rid18379863.denovo.17, whole genome shotgun sequence	65217..65590																																									avrA	ABOEDM010000006.1	173549..174417	99.54	870	0						
GCA_032882955.1_PDT001948585.1_genomic.fna	Salmonella_enterica	0.5214	427.449 KB	5	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOEDI010000002.1 Salmonella enterica strain PNUSAS393756 SAMN37898708-rid19913473.denovo.02, whole genome shotgun sequence	305918..306355	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOEDI010000023.1 Salmonella enterica strain PNUSAS393756 SAMN37898708-rid19913473.guided.19, whole genome shotgun sequence	8238..8675	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEDI010000006.1	94010..94879	99.54	870	0						
GCA_032882975.1_PDT001778235.1_genomic.fna	Salmonella_enterica	0.521	327.34 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEDO010000002.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.denovo.02, whole genome shotgun sequence	159429..159866	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEDO010000023.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.denovo.23, whole genome shotgun sequence	2657..3493	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEDO010000023.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.denovo.23, whole genome shotgun sequence	3493..4296	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEDO010000042.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.guided.24, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEDO010000042.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.guided.24, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEDO010000044.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.guided.28, whole genome shotgun sequence	3535..3972	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOEDO010000023.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.denovo.23, whole genome shotgun sequence	33513..34658	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEDO010000042.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.guided.24, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOEDO010000026.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.denovo.29, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEDO010000046.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.guided.32, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEDO010000023.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.denovo.23, whole genome shotgun sequence	4357..5172	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEDO010000042.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.guided.24, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEDO010000023.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.denovo.23, whole genome shotgun sequence	122..1396	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEDO010000042.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.guided.24, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOEDO010000022.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.denovo.22, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEDO010000017.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.denovo.17, whole genome shotgun sequence	29363..29622		enterobacteriales	IncX1	98.66	374 / 374	ABOEDO010000017.1 Salmonella enterica strain AG23-0130 SAMN35723238-rid18379853.denovo.17, whole genome shotgun sequence	65217..65590																																									avrA	ABOEDO010000006.1	173549..174417	99.54	870	0						
GCA_032883075.1_PDT001778234.1_genomic.fna	Salmonella_enterica	0.5213	430.4 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEDP010000011.1 Salmonella enterica strain PNUSAS355698 SAMN35723226-rid18378253.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEDP010000034.1 Salmonella enterica strain PNUSAS355698 SAMN35723226-rid18378253.guided.25, whole genome shotgun sequence	13688..14125	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOEDP010000017.1 Salmonella enterica strain PNUSAS355698 SAMN35723226-rid18378253.denovo.17, whole genome shotgun sequence	34957..35490																																																						avrA	ABOEDP010000001.1	153803..154669	98.966	870	0						
GCA_032883095.1_PDT001778233.1_genomic.fna	Salmonella_enterica	0.5202	412.517 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEDQ010000001.1 Salmonella enterica strain PNUSAS355695 SAMN35723223-rid18378243.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEDQ010000029.1 Salmonella enterica strain PNUSAS355695 SAMN35723223-rid18378243.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEDQ010000014.1 Salmonella enterica strain PNUSAS355695 SAMN35723223-rid18378243.denovo.15, whole genome shotgun sequence	40563..41205	enterobacteriales	IncFII(S)	100	262 / 262	ABOEDQ010000019.1 Salmonella enterica strain PNUSAS355695 SAMN35723223-rid18378243.denovo.22, whole genome shotgun sequence	3416..3677		enterobacteriales	IncX1	98.93	374 / 374	ABOEDQ010000016.1 Salmonella enterica strain PNUSAS355695 SAMN35723223-rid18378243.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABOEDQ010000002.1	553362..554231	99.54	870	0						
GCA_032883115.1_PDT001778231.1_genomic.fna	Salmonella_enterica	0.5204	489.863 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEDS010000001.1 Salmonella enterica strain PNUSAS355694 SAMN35723222-rid18378233.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEDS010000027.1 Salmonella enterica strain PNUSAS355694 SAMN35723222-rid18378233.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEDS010000013.1 Salmonella enterica strain PNUSAS355694 SAMN35723222-rid18378233.denovo.13, whole genome shotgun sequence	40557..41199	enterobacteriales	IncFII(S)	100	262 / 262	ABOEDS010000017.1 Salmonella enterica strain PNUSAS355694 SAMN35723222-rid18378233.denovo.20, whole genome shotgun sequence	3414..3675		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEDS010000011.1 Salmonella enterica strain PNUSAS355694 SAMN35723222-rid18378233.denovo.11, whole genome shotgun sequence	81111..81252		enterobacteriales	IncX1	98.93	374 / 374	ABOEDS010000014.1 Salmonella enterica strain PNUSAS355694 SAMN35723222-rid18378233.denovo.14, whole genome shotgun sequence	32011..32384																																		avrA	ABOEDS010000002.1	553362..554231	99.54	870	0						
GCA_032883135.1_PDT001778232.1_genomic.fna	Salmonella_enterica	0.5207	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEDR010000001.1 Salmonella enterica strain PNUSAS355696 SAMN35723224-rid18379843.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEDR010000026.1 Salmonella enterica strain PNUSAS355696 SAMN35723224-rid18379843.guided.17, whole genome shotgun sequence	12139..12576	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEDR010000012.1 Salmonella enterica strain PNUSAS355696 SAMN35723224-rid18379843.denovo.12, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABOEDR010000012.1 Salmonella enterica strain PNUSAS355696 SAMN35723224-rid18379843.denovo.12, whole genome shotgun sequence	53092..53353		enterobacteriales	IncX1	98.93	374 / 374	ABOEDR010000013.1 Salmonella enterica strain PNUSAS355696 SAMN35723224-rid18379843.denovo.13, whole genome shotgun sequence	32011..32384																																									avrA	ABOEDR010000002.1	553362..554231	99.54	870	0						
GCA_032883155.1_PDT001778230.1_genomic.fna	Salmonella_enterica	0.5206	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEDT010000001.1 Salmonella enterica strain PNUSAS355689 SAMN35723227-rid18379833.denovo.01, whole genome shotgun sequence	493915..494352	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEDT010000014.1 Salmonella enterica strain PNUSAS355689 SAMN35723227-rid18379833.denovo.14, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABOEDT010000014.1 Salmonella enterica strain PNUSAS355689 SAMN35723227-rid18379833.denovo.14, whole genome shotgun sequence	53092..53353		enterobacteriales	IncX1	98.93	374 / 374	ABOEDT010000015.1 Salmonella enterica strain PNUSAS355689 SAMN35723227-rid18379833.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABOEDT010000002.1	553362..554231	99.54	870	0						
GCA_032883175.1_PDT001778229.1_genomic.fna	Salmonella_enterica	0.5203	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEDU010000001.1 Salmonella enterica strain PNUSAS355690 SAMN35723228-rid18379823.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEDU010000026.1 Salmonella enterica strain PNUSAS355690 SAMN35723228-rid18379823.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEDU010000012.1 Salmonella enterica strain PNUSAS355690 SAMN35723228-rid18379823.denovo.13, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOEDU010000012.1 Salmonella enterica strain PNUSAS355690 SAMN35723228-rid18379823.denovo.13, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABOEDU010000013.1 Salmonella enterica strain PNUSAS355690 SAMN35723228-rid18379823.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABOEDU010000002.1	553362..554231	99.54	870	0						
GCA_032883195.1_PDT001778227.1_genomic.fna	Salmonella_enterica	0.5214	478.496 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEDW010000001.1 Salmonella enterica strain PNUSAS355699 SAMN35723213-rid18379813.denovo.01, whole genome shotgun sequence	774368..774805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEDW010000024.1 Salmonella enterica strain PNUSAS355699 SAMN35723213-rid18379813.guided.17, whole genome shotgun sequence	5458..5895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEDW010000012.1 Salmonella enterica strain PNUSAS355699 SAMN35723213-rid18379813.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOEDW010000012.1 Salmonella enterica strain PNUSAS355699 SAMN35723213-rid18379813.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABOEDW010000002.1	553636..554505	99.54	870	0						
GCA_032883215.1_PDT001778228.1_genomic.fna	Salmonella_enterica	0.5217	300.108 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEDV010000001.1 Salmonella enterica strain PNUSAS355697 SAMN35723225-rid18378223.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEDV010000043.1 Salmonella enterica strain PNUSAS355697 SAMN35723225-rid18378223.guided.20, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOEDV010000016.1 Salmonella enterica strain PNUSAS355697 SAMN35723225-rid18378223.denovo.16, whole genome shotgun sequence	34103..34745	enterobacteriales	IncFII(S)	100	262 / 262	ABOEDV010000016.1 Salmonella enterica strain PNUSAS355697 SAMN35723225-rid18378223.denovo.16, whole genome shotgun sequence	49830..50091																																																avrA	ABOEDV010000002.1	209733..210602	99.885	870	0						
GCA_032883235.1_PDT001948640.1_genomic.fna	Salmonella_enterica	0.5204	447.119 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(p14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOEDX010000001.1 Salmonella enterica strain PNUSAS393738 SAMN37898900-rid19914023.denovo.01, whole genome shotgun sequence	136615..137052	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOEDX010000029.1 Salmonella enterica strain PNUSAS393738 SAMN37898900-rid19914023.guided.17, whole genome shotgun sequence	14113..14550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOEDX010000014.1 Salmonella enterica strain PNUSAS393738 SAMN37898900-rid19914023.denovo.14, whole genome shotgun sequence	17040..17682	enterobacteriales	IncFII(p14)	92.02	263 / 262	ABOEDX010000014.1 Salmonella enterica strain PNUSAS393738 SAMN37898900-rid19914023.denovo.14, whole genome shotgun sequence	33599..33857																																																avrA	ABOEDX010000003.1	394847..395408	99.645	563	0	avrA	ABOEDX010000003.1	395408..395666	98.842	259	7.3e-131
GCA_032883255.1_PDT001948613.1_genomic.fna	Salmonella_enterica	0.5215	447.378 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOEEB010000001.1 Salmonella enterica strain PNUSAS393793 SAMN37898855-rid19913753.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOEEB010000028.1 Salmonella enterica strain PNUSAS393793 SAMN37898855-rid19913753.guided.21, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOEEB010000019.1 Salmonella enterica strain PNUSAS393793 SAMN37898855-rid19913753.denovo.22, whole genome shotgun sequence	239..369																																																						avrA	ABOEEB010000002.1	560733..561602	99.425	870	0						
GCA_032883275.1_PDT001948634.1_genomic.fna	Salmonella_enterica	0.5202	300.954 KB	7	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEDZ010000001.1 Salmonella enterica strain PNUSAS393737 SAMN37898892-rid19913963.denovo.01, whole genome shotgun sequence	512665..513102	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEDZ010000033.1 Salmonella enterica strain PNUSAS393737 SAMN37898892-rid19913963.guided.14, whole genome shotgun sequence	13586..14023	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOEDZ010000020.1 Salmonella enterica strain PNUSAS393737 SAMN37898892-rid19913963.denovo.21, whole genome shotgun sequence	48584..49226	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOEDZ010000024.1 Salmonella enterica strain PNUSAS393737 SAMN37898892-rid19913963.denovo.26, whole genome shotgun sequence	10979..11205																																																avrA	ABOEDZ010000012.1	150624..151494	99.196	871	0						
GCA_032883295.1_PDT001948616.1_genomic.fna	Salmonella_enterica	0.5212	567.235 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOEEA010000001.1 Salmonella enterica strain PNUSAS393726 SAMN37898842-rid19913783.denovo.01, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOEEA010000022.1 Salmonella enterica strain PNUSAS393726 SAMN37898842-rid19913783.guided.14, whole genome shotgun sequence	38691..39128	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEEA010000003.1	160331..161200	99.54	870	0						
GCA_032883315.1_PDT001948630.1_genomic.fna	Salmonella_enterica	0.5222	339.347 KB	5	aroC_127,dnaN_81,hemD_111,hisD_564,purE_39,sucA_226,thrA_41	2225	13:b:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_127	dnaN	100	100	dnaN_81	hemD	100	100	hemD_111	hisD	100	100	hisD_564	purE	100	100	purE_39	sucA	100	100	sucA_226	thrA	100	100	thrA_41	13	b	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Durham		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOEDY010000003.1 Salmonella enterica strain PNUSAS393784 SAMN37898895-rid19913923.denovo.03, whole genome shotgun sequence	153493..153930	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOEDY010000040.1 Salmonella enterica strain PNUSAS393784 SAMN37898895-rid19913923.guided.24, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEDY010000002.1	140421..141290	98.966	870	0						
GCA_032883335.1_PDT001948609.1_genomic.fna	Salmonella_enterica	0.5206	228.036 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		5	Col156,IncFIB(S),IncFII,IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEED010000002.1 Salmonella enterica strain PNUSAS393721 SAMN37898851-rid19913713.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEED010000052.1 Salmonella enterica strain PNUSAS393721 SAMN37898851-rid19913713.guided.33, whole genome shotgun sequence	538..975	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	97.4	154 / 154	ABOEED010000039.1 Salmonella enterica strain PNUSAS393721 SAMN37898851-rid19913713.denovo.42, whole genome shotgun sequence	1415..1568	enterobacteriales	IncFIB(S)	100	643 / 643	ABOEED010000017.1 Salmonella enterica strain PNUSAS393721 SAMN37898851-rid19913713.denovo.17, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII	99.62	261 / 261	ABOEED010000023.1 Salmonella enterica strain PNUSAS393721 SAMN37898851-rid19913713.denovo.23, whole genome shotgun sequence	10370..10630		enterobacteriales	IncFII(S)	100	262 / 262	ABOEED010000017.1 Salmonella enterica strain PNUSAS393721 SAMN37898851-rid19913713.denovo.17, whole genome shotgun sequence	30407..30668		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEED010000019.1 Salmonella enterica strain PNUSAS393721 SAMN37898851-rid19913713.denovo.19, whole genome shotgun sequence	85043..85184																											avrA	ABOEED010000006.1	97953..98821	100	869	0						
GCA_032883355.1_PDT001948604.1_genomic.fna	Salmonella_enterica	0.521	709.615 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOEEE010000001.1 Salmonella enterica strain PNUSAS393792 SAMN37898840-rid19913663.denovo.01, whole genome shotgun sequence	268870..269307	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOEEE010000022.1 Salmonella enterica strain PNUSAS393792 SAMN37898840-rid19913663.guided.17, whole genome shotgun sequence	14358..14795	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEEE010000003.1	160339..161208	99.54	870	0						
GCA_032883375.1_PDT001948610.1_genomic.fna	Salmonella_enterica	0.5202	496.946 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEEC010000001.1 Salmonella enterica strain PNUSAS393727 SAMN37898849-rid19913723.denovo.01, whole genome shotgun sequence	530097..530534	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEEC010000043.1 Salmonella enterica strain PNUSAS393727 SAMN37898849-rid19913723.guided.14, whole genome shotgun sequence	16213..16650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOEEC010000022.1 Salmonella enterica strain PNUSAS393727 SAMN37898849-rid19913723.denovo.24, whole genome shotgun sequence	11459..12101																																																						avrA	ABOEEC010000002.1	482476..483345	99.425	870	0						
GCA_032883395.1_PDT001948583.1_genomic.fna	Salmonella_enterica	0.5221	441.629 KB	5	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEEF010000004.1 Salmonella enterica strain PNUSAS393761 SAMN37898705-rid19913453.denovo.04, whole genome shotgun sequence	145169..145606	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOEEF010000023.1 Salmonella enterica strain PNUSAS393761 SAMN37898705-rid19913453.guided.18, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEEF010000005.1	401323..402192	99.77	870	0						
GCA_032883415.1_PDT001778226.1_genomic.fna	Salmonella_enterica	0.5225	508.6 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEEG010000001.1 Salmonella enterica strain PNUSAS355692 SAMN35723220-rid18376813.denovo.01, whole genome shotgun sequence	790295..790732	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEEG010000032.1 Salmonella enterica strain PNUSAS355692 SAMN35723220-rid18376813.guided.18, whole genome shotgun sequence	2946..3383	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEEG010000002.1	146983..147852	98.966	870	0						
GCA_032883435.1_PDT001778225.1_genomic.fna	Salmonella_enterica	0.52	489.645 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEEH010000001.1 Salmonella enterica strain PNUSAS355705 SAMN35723214-rid18379803.denovo.01, whole genome shotgun sequence	733717..734154	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEEH010000024.1 Salmonella enterica strain PNUSAS355705 SAMN35723214-rid18379803.guided.14, whole genome shotgun sequence	16779..17216	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEEH010000013.1 Salmonella enterica strain PNUSAS355705 SAMN35723214-rid18379803.denovo.13, whole genome shotgun sequence	48513..49155	enterobacteriales	IncFII(S)	100	262 / 262	ABOEEH010000013.1 Salmonella enterica strain PNUSAS355705 SAMN35723214-rid18379803.denovo.13, whole genome shotgun sequence	4260..4521		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOEEH010000011.1 Salmonella enterica strain PNUSAS355705 SAMN35723214-rid18379803.denovo.11, whole genome shotgun sequence	30865..31006																																									avrA	ABOEEH010000002.1	584550..585419	99.54	870	0						
GCA_032883455.1_PDT001778223.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEEJ010000001.1 Salmonella enterica strain PNUSAS355702 SAMN35723216-rid18378203.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEEJ010000027.1 Salmonella enterica strain PNUSAS355702 SAMN35723216-rid18378203.guided.16, whole genome shotgun sequence	3929..4366	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEEJ010000012.1 Salmonella enterica strain PNUSAS355702 SAMN35723216-rid18378203.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOEEJ010000012.1 Salmonella enterica strain PNUSAS355702 SAMN35723216-rid18378203.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABOEEJ010000002.1	553642..554511	99.54	870	0						
GCA_032883475.1_PDT001778224.1_genomic.fna	Salmonella_enterica	0.5203	431.547 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEEI010000001.1 Salmonella enterica strain PNUSAS355700 SAMN35723211-rid18378213.denovo.01, whole genome shotgun sequence	815084..815521	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEEI010000022.1 Salmonella enterica strain PNUSAS355700 SAMN35723211-rid18378213.guided.16, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	ABOEEI010000013.1 Salmonella enterica strain PNUSAS355700 SAMN35723211-rid18378213.denovo.13, whole genome shotgun sequence	5285..6145	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABOEEI010000013.1 Salmonella enterica strain PNUSAS355700 SAMN35723211-rid18378213.denovo.13, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABOEEI010000013.1 Salmonella enterica strain PNUSAS355700 SAMN35723211-rid18378213.denovo.13, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABOEEI010000013.1 Salmonella enterica strain PNUSAS355700 SAMN35723211-rid18378213.denovo.13, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABOEEI010000013.1 Salmonella enterica strain PNUSAS355700 SAMN35723211-rid18378213.denovo.13, whole genome shotgun sequence	5285..6145	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	ABOEEI010000025.1 Salmonella enterica strain PNUSAS355700 SAMN35723211-rid18378213.guided.22, whole genome shotgun sequence	3945..4805	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	ABOEEI010000025.1 Salmonella enterica strain PNUSAS355700 SAMN35723211-rid18378213.guided.22, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	ABOEEI010000025.1 Salmonella enterica strain PNUSAS355700 SAMN35723211-rid18378213.guided.22, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	ABOEEI010000025.1 Salmonella enterica strain PNUSAS355700 SAMN35723211-rid18378213.guided.22, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	ABOEEI010000025.1 Salmonella enterica strain PNUSAS355700 SAMN35723211-rid18378213.guided.22, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEEI010000012.1 Salmonella enterica strain PNUSAS355700 SAMN35723211-rid18378213.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOEEI010000016.1 Salmonella enterica strain PNUSAS355700 SAMN35723211-rid18378213.denovo.19, whole genome shotgun sequence	3404..3665		enterobacteriales	IncX1	98.66	374 / 374	ABOEEI010000013.1 Salmonella enterica strain PNUSAS355700 SAMN35723211-rid18378213.denovo.13, whole genome shotgun sequence	11911..12284																																									avrA	ABOEEI010000002.1	553389..554258	99.54	870	0						
GCA_032883495.1_PDT001778221.1_genomic.fna	Salmonella_enterica	0.5214	489.888 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEEL010000001.1 Salmonella enterica strain PNUSAS355693 SAMN35723221-rid18378193.denovo.01, whole genome shotgun sequence	774495..774932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEEL010000026.1 Salmonella enterica strain PNUSAS355693 SAMN35723221-rid18378193.guided.18, whole genome shotgun sequence	3522..3959	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEEL010000012.1 Salmonella enterica strain PNUSAS355693 SAMN35723221-rid18378193.denovo.12, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABOEEL010000012.1 Salmonella enterica strain PNUSAS355693 SAMN35723221-rid18378193.denovo.12, whole genome shotgun sequence	53092..53353																																																avrA	ABOEEL010000002.1	553624..554493	99.54	870	0						
GCA_032883515.1_PDT001778222.1_genomic.fna	Salmonella_enterica	0.519	487.055 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-33,blaTEM-33	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col440I,Col440I,IncX1	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEEK010000001.1 Salmonella enterica strain PNUSAS355691 SAMN35723219-rid18379793.denovo.01, whole genome shotgun sequence	486814..487251	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.18	385/438	ABOEEK010000045.1 Salmonella enterica strain PNUSAS355691 SAMN35723219-rid18379793.guided.22, whole genome shotgun sequence	1..385	Amikacin, Tobramycin	NC_003197	blaTEM-33	100	861/861	ABOEEK010000015.1 Salmonella enterica strain PNUSAS355691 SAMN35723219-rid18379793.denovo.16, whole genome shotgun sequence	6900..7760	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	GU371926	blaTEM-33	100	861/861	ABOEEK010000046.1 Salmonella enterica strain PNUSAS355691 SAMN35723219-rid18379793.guided.25, whole genome shotgun sequence	4132..4992	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	GU371926																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOEEK010000027.1 Salmonella enterica strain PNUSAS355691 SAMN35723219-rid18379793.denovo.31, whole genome shotgun sequence	1480..1610	enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOEEK010000028.1 Salmonella enterica strain PNUSAS355691 SAMN35723219-rid18379793.denovo.32, whole genome shotgun sequence	546..674		enterobacteriales	Col440I	91.23	114 / 114	ABOEEK010000024.1 Salmonella enterica strain PNUSAS355691 SAMN35723219-rid18379793.denovo.28, whole genome shotgun sequence	1293..1405		enterobacteriales	Col440I	93.64	110 / 114	ABOEEK010000025.1 Salmonella enterica strain PNUSAS355691 SAMN35723219-rid18379793.denovo.29, whole genome shotgun sequence	1189..1298		enterobacteriales	IncX1	98.13	374 / 374	ABOEEK010000015.1 Salmonella enterica strain PNUSAS355691 SAMN35723219-rid18379793.denovo.16, whole genome shotgun sequence	13524..13897																											avrA	ABOEEK010000003.1	145414..146283	98.966	870	0						
GCA_032883535.1_PDT001778220.1_genomic.fna	Salmonella_enterica	0.5206	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEEM010000001.1 Salmonella enterica strain PNUSAS355704 SAMN35723212-rid18379783.denovo.01, whole genome shotgun sequence	857471..857908	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEEM010000025.1 Salmonella enterica strain PNUSAS355704 SAMN35723212-rid18379783.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEEM010000016.1 Salmonella enterica strain PNUSAS355704 SAMN35723212-rid18379783.denovo.17, whole genome shotgun sequence	6839..7481	enterobacteriales	IncFII(S)	100	262 / 262	ABOEEM010000018.1 Salmonella enterica strain PNUSAS355704 SAMN35723212-rid18379783.denovo.19, whole genome shotgun sequence	3397..3658		enterobacteriales	IncX1	98.93	374 / 374	ABOEEM010000012.1 Salmonella enterica strain PNUSAS355704 SAMN35723212-rid18379783.denovo.13, whole genome shotgun sequence	32011..32384																																									avrA	ABOEEM010000002.1	553362..554231	99.54	870	0						
GCA_032883555.1_PDT001778219.1_genomic.fna	Salmonella_enterica	0.5219	341.181 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEEN010000002.1 Salmonella enterica strain PNUSAS355703 SAMN35723217-rid18379773.denovo.02, whole genome shotgun sequence	145197..145634	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEEN010000054.1 Salmonella enterica strain PNUSAS355703 SAMN35723217-rid18379773.guided.23, whole genome shotgun sequence	32881..33318	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOEEN010000015.1 Salmonella enterica strain PNUSAS355703 SAMN35723217-rid18379773.denovo.15, whole genome shotgun sequence	36049..36691	enterobacteriales	IncFII(S)	100	262 / 262	ABOEEN010000015.1 Salmonella enterica strain PNUSAS355703 SAMN35723217-rid18379773.denovo.15, whole genome shotgun sequence	51776..52037																																																avrA	ABOEEN010000001.1	450902..451771	99.885	870	0						
GCA_032883575.1_PDT001778218.1_genomic.fna	Salmonella_enterica	0.5215	492.592 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEEO010000001.1 Salmonella enterica strain PNUSAS355688 SAMN35723218-rid18378183.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEEO010000024.1 Salmonella enterica strain PNUSAS355688 SAMN35723218-rid18378183.guided.17, whole genome shotgun sequence	13517..13954	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEEO010000012.1 Salmonella enterica strain PNUSAS355688 SAMN35723218-rid18378183.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOEEO010000012.1 Salmonella enterica strain PNUSAS355688 SAMN35723218-rid18378183.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABOEEO010000002.1	553642..554511	99.54	870	0						
GCA_032883595.1_PDT001778217.1_genomic.fna	Salmonella_enterica	0.5201	735.903 KB	3	aroC_595,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	2870	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_595	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEEP010000001.1 Salmonella enterica strain PNUSAS355701 SAMN35723215-rid18379763.denovo.01, whole genome shotgun sequence	1436859..1437296	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEEP010000029.1 Salmonella enterica strain PNUSAS355701 SAMN35723215-rid18379763.guided.12, whole genome shotgun sequence	34241..34678	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOEEP010000013.1 Salmonella enterica strain PNUSAS355701 SAMN35723215-rid18379763.denovo.16, whole genome shotgun sequence	5946..6588																																																						avrA	ABOEEP010000002.1	669971..670840	99.425	870	0						
GCA_032883615.1_PDT001778216.1_genomic.fna	Salmonella_enterica	0.521	325.512 KB	5	aroC_118,dnaN_107,hemD_8,hisD_51,purE_2,sucA_117,thrA_16	319	7:z29:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_118	dnaN	100	100	dnaN_107	hemD	100	100	hemD_8	hisD	100	100	hisD_51	purE	100	100	purE_2	sucA	100	100	sucA_117	thrA	100	100	thrA_16	7	z29	-	Salmonella enterica subspecies enterica (subspecies I)	Tennessee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEEQ010000001.1 Salmonella enterica strain PNUSAS355603 SAMN35723180-rid18378173.denovo.01, whole genome shotgun sequence	482294..482731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEEQ010000031.1 Salmonella enterica strain PNUSAS355603 SAMN35723180-rid18378173.guided.18, whole genome shotgun sequence	5701..6138	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEEQ010000008.1	143887..144756	99.655	870	0						
GCA_032883635.1_PDT001778215.1_genomic.fna	Salmonella_enterica	0.5227	342.626 KB	6	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEER010000007.1 Salmonella enterica strain PNUSAS355597 SAMN35723177-rid18379753.denovo.07, whole genome shotgun sequence	145129..145566	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOEER010000026.1 Salmonella enterica strain PNUSAS355597 SAMN35723177-rid18379753.guided.22, whole genome shotgun sequence	7327..7764	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEER010000003.1	401402..402271	99.77	870	0						
GCA_032883675.1_PDT001778213.1_genomic.fna	Salmonella_enterica	0.5227	406.933 KB	4	aroC_22,dnaN_104,hemD_25,hisD_113,purE_12,sucA_83,thrA_4	308	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_25	hisD	100	100	hisD_113	purE	100	100	purE_12	sucA	100	100	sucA_83	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABOEET010000001.1 Salmonella enterica strain PNUSAS355601 SAMN35723169-rid18378153.denovo.01, whole genome shotgun sequence	501481..501918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABOEET010000032.1 Salmonella enterica strain PNUSAS355601 SAMN35723169-rid18378153.guided.20, whole genome shotgun sequence	12706..13143	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEET010000003.1	176018..176887	99.655	870	0						
GCA_032883695.1_PDT001778214.1_genomic.fna	Salmonella_enterica	0.5213	333.712 KB	6	aroC_10,dnaN_1263,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	9720	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	ColpVC,IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_1263	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEES010000003.1 Salmonella enterica strain PNUSAS355605 SAMN35723175-rid18378163.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEES010000057.1 Salmonella enterica strain PNUSAS355605 SAMN35723175-rid18378163.guided.32, whole genome shotgun sequence	19355..19792	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	96.89	193 / 193	ABOEES010000045.1 Salmonella enterica strain PNUSAS355605 SAMN35723175-rid18378163.denovo.47, whole genome shotgun sequence	1524..1716	enterobacteriales	IncFIB(S)	100	643 / 643	ABOEES010000013.1 Salmonella enterica strain PNUSAS355605 SAMN35723175-rid18378163.denovo.13, whole genome shotgun sequence	79881..80523		enterobacteriales	IncFII(S)	100	262 / 262	ABOEES010000013.1 Salmonella enterica strain PNUSAS355605 SAMN35723175-rid18378163.denovo.13, whole genome shotgun sequence	1752..2013		enterobacteriales	IncI1-I(Alpha)	95.3	149 / 142	ABOEES010000023.1 Salmonella enterica strain PNUSAS355605 SAMN35723175-rid18378163.denovo.23, whole genome shotgun sequence	53894..54042																																		avrA	ABOEES010000004.1	174500..175368	100	869	0						
GCA_032883715.1_PDT001778211.1_genomic.fna	Salmonella_enterica	0.522	210.57 KB	7	aroC_6,dnaN_7,hemD_10*,hisD_10,purE_8,sucA_10,thrA_14	16*	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	99.7685185185185	100	hemD_10*	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOEEV010000001.1 Salmonella enterica strain PNUSAS355596 SAMN35723172-rid18378143.denovo.01, whole genome shotgun sequence	357363..357800	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOEEV010000038.1 Salmonella enterica strain PNUSAS355596 SAMN35723172-rid18378143.guided.28, whole genome shotgun sequence	5063..5500	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEEV010000003.1	39348..40216	99.195	870	0						
GCA_032883735.1_PDT001778212.1_genomic.fna	Salmonella_enterica	0.5126	187.271 KB	9	aroC_65,dnaN_25,hemD_29,hisD_24,purE_20,sucA_50,thrA_497	2131	41:z4,z23:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_65	dnaN	100	100	dnaN_25	hemD	100	100	hemD_29	hisD	100	100	hisD_24	purE	100	100	purE_20	sucA	100	100	sucA_50	thrA	100	100	thrA_497	41	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 41:z4,z23:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032883755.1_PDT001778210.1_genomic.fna	Salmonella_enterica	0.5214	478.432 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEEW010000001.1 Salmonella enterica strain PNUSAS355604 SAMN35723171-rid18379733.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEEW010000025.1 Salmonella enterica strain PNUSAS355604 SAMN35723171-rid18379733.guided.20, whole genome shotgun sequence	5126..5563	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEEW010000015.1 Salmonella enterica strain PNUSAS355604 SAMN35723171-rid18379733.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOEEW010000015.1 Salmonella enterica strain PNUSAS355604 SAMN35723171-rid18379733.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOEEW010000002.1	553077..553946	99.54	870	0						
GCA_032883775.1_PDT001778208.1_genomic.fna	Salmonella_enterica	0.5212	366.785 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEEY010000001.1 Salmonella enterica strain PNUSAS355602 SAMN35723173-rid18378133.denovo.01, whole genome shotgun sequence	477380..477817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEEY010000027.1 Salmonella enterica strain PNUSAS355602 SAMN35723173-rid18378133.guided.19, whole genome shotgun sequence	31399..31836	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOEEY010000016.1 Salmonella enterica strain PNUSAS355602 SAMN35723173-rid18378133.denovo.16, whole genome shotgun sequence	2465..2998																																																						avrA	ABOEEY010000010.1	150637..151507	99.196	871	0						
GCA_032883795.1_PDT001778207.1_genomic.fna	Salmonella_enterica	0.5212	305.505 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEEZ010000001.1 Salmonella enterica strain PNUSAS355599 SAMN35723174-rid18379713.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEEZ010000030.1 Salmonella enterica strain PNUSAS355599 SAMN35723174-rid18379713.guided.19, whole genome shotgun sequence	27431..27868	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEEZ010000017.1 Salmonella enterica strain PNUSAS355599 SAMN35723174-rid18379713.denovo.17, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABOEEZ010000017.1 Salmonella enterica strain PNUSAS355599 SAMN35723174-rid18379713.denovo.17, whole genome shotgun sequence	4078..4339																																																avrA	ABOEEZ010000002.1	505310..506179	99.54	870	0						
GCA_032883815.1_PDT001778209.1_genomic.fna	Salmonella_enterica	0.521	402.263 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEEX010000001.1 Salmonella enterica strain PNUSAS355595 SAMN35723167-rid18379723.denovo.01, whole genome shotgun sequence	149478..149915	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEEX010000024.1 Salmonella enterica strain PNUSAS355595 SAMN35723167-rid18379723.guided.16, whole genome shotgun sequence	6062..6499	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032883835.1_PDT001778205.1_genomic.fna	Salmonella_enterica	0.5223	499.14 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,aadA2b,blaCARB-2,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEFA010000001.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.denovo.01, whole genome shotgun sequence	638774..639211	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOEFA010000027.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.denovo.30, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOEFA010000037.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.guided.23, whole genome shotgun sequence	4163..4600	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOEFA010000045.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.guided.42, whole genome shotgun sequence	144..923	Spectinomycin, Streptomycin	D43625	aadA2b	99.74	780/780	ABOEFA010000046.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.guided.43, whole genome shotgun sequence	144..923	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOEFA010000027.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.denovo.30, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	99.88	867/867	ABOEFA010000039.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.guided.33, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOEFA010000040.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.guided.34, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOEFA010000025.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.denovo.28, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOEFA010000043.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.guided.38, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOEFA010000023.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.denovo.25, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEFA010000042.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.guided.37, whole genome shotgun sequence	309..1522	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOEFA010000027.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.denovo.30, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOEFA010000039.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.guided.33, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOEFA010000040.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.guided.34, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOEFA010000031.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.denovo.40, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOEFA010000044.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.guided.39, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOEFA010000023.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.denovo.25, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEFA010000041.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.guided.35, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOEFA010000023.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.denovo.25, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOEFA010000041.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.guided.35, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOEFA010000020.1 Salmonella enterica strain PNUSAS355600 SAMN35723168-rid18379703.denovo.21, whole genome shotgun sequence	8402..8652																																																						avrA	ABOEFA010000002.1	552944..553813	99.77	870	0						
GCA_032883845.1_PDT001778206.1_genomic.fna	Salmonella_enterica	0.5227	196.815 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEFB010000001.1 Salmonella enterica strain PNUSAS355598 SAMN35723176-rid18378123.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOEFB010000043.1 Salmonella enterica strain PNUSAS355598 SAMN35723176-rid18378123.guided.31, whole genome shotgun sequence	1350..1787	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEFB010000002.1	39349..40218	99.655	870	0						
GCA_032883895.1_PDT001948633.1_genomic.fna	Salmonella_enterica	0.5159	270.683 KB	7	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFII(S),IncFII(SARC14),IncFII(pCRY)	aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABOEFD010000011.1 Salmonella enterica strain PNUSAS393780 SAMN37898884-rid19913953.denovo.11, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABOEFD010000044.1 Salmonella enterica strain PNUSAS393780 SAMN37898884-rid19913953.guided.21, whole genome shotgun sequence	3943..4380	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	93.63	251 / 262	ABOEFD010000014.1 Salmonella enterica strain PNUSAS393780 SAMN37898884-rid19913953.denovo.14, whole genome shotgun sequence	93016..93263	enterobacteriales	IncFII(SARC14)	95.07	446 / 445	ABOEFD010000014.1 Salmonella enterica strain PNUSAS393780 SAMN37898884-rid19913953.denovo.14, whole genome shotgun sequence	93523..93967		enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABOEFD010000025.1 Salmonella enterica strain PNUSAS393780 SAMN37898884-rid19913953.denovo.27, whole genome shotgun sequence	670..1262																																																				
GCA_032883955.1_PDT001948622.1_genomic.fna	Salmonella_enterica	0.5219	317.475 KB	5	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEFG010000003.1 Salmonella enterica strain PNUSAS393786 SAMN37898857-rid19913843.denovo.03, whole genome shotgun sequence	254356..254793	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOEFG010000040.1 Salmonella enterica strain PNUSAS393786 SAMN37898857-rid19913843.guided.20, whole genome shotgun sequence	44296..44733	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEFG010000020.1 Salmonella enterica strain PNUSAS393786 SAMN37898857-rid19913843.denovo.21, whole genome shotgun sequence	5125..5266																																																						avrA	ABOEFG010000001.1	733943..734812	99.77	870	0						
GCA_032883965.1_PDT001948584.1_genomic.fna	Salmonella_enterica	0.5218	455.227 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOEFI010000001.1 Salmonella enterica strain PNUSAS393751 SAMN37898711-rid19913463.denovo.01, whole genome shotgun sequence	636663..637100	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOEFI010000034.1 Salmonella enterica strain PNUSAS393751 SAMN37898711-rid19913463.guided.12, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEFI010000002.1	498766..499634	99.425	870	0						
GCA_032884005.1_PDT001948618.1_genomic.fna	Salmonella_enterica	0.5216	207.488 KB	7	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEFH010000007.1 Salmonella enterica strain PNUSAS393800 SAMN37898834-rid19913803.denovo.07, whole genome shotgun sequence	31046..31483	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOEFH010000033.1 Salmonella enterica strain PNUSAS393800 SAMN37898834-rid19913803.guided.26, whole genome shotgun sequence	13772..14209	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEFH010000002.1	411104..411973	99.77	870	0						
GCA_032884035.1_PDT001948647.1_genomic.fna	Salmonella_enterica	0.5215	406.801 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOEFF010000002.1 Salmonella enterica strain PNUSAS393773 SAMN37898909-rid19914093.denovo.02, whole genome shotgun sequence	136917..137354	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOEFF010000040.1 Salmonella enterica strain PNUSAS393773 SAMN37898909-rid19914093.guided.22, whole genome shotgun sequence	5572..6009	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEFF010000009.1	101941..102810	99.655	870	0						
GCA_032884115.1_PDT001777962.1_genomic.fna	Salmonella_enterica	0.5216	335.442 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEFM010000001.1 Salmonella enterica strain PNUSAS355640 SAMN35723132-rid18376673.denovo.01, whole genome shotgun sequence	454798..455235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEFM010000030.1 Salmonella enterica strain PNUSAS355640 SAMN35723132-rid18376673.guided.16, whole genome shotgun sequence	42704..43141	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOEFM010000025.1 Salmonella enterica strain PNUSAS355640 SAMN35723132-rid18376673.denovo.28, whole genome shotgun sequence	547..675																																																						avrA	ABOEFM010000006.1	146984..147853	98.966	870	0						
GCA_032884155.1_PDT001777963.1_genomic.fna	Salmonella_enterica	0.52	234.898 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEFL010000002.1 Salmonella enterica strain PNUSAS355638 SAMN35723130-rid18376683.denovo.02, whole genome shotgun sequence	462162..462599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEFL010000041.1 Salmonella enterica strain PNUSAS355638 SAMN35723130-rid18376683.guided.23, whole genome shotgun sequence	15873..16310	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEFL010000001.1	550819..551688	99.195	870	0						
GCA_032884235.1_PDT001777960.1_genomic.fna	Salmonella_enterica	0.5203	470.106 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEFO010000001.1 Salmonella enterica strain PNUSAS355639 SAMN35723131-rid18376663.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEFO010000032.1 Salmonella enterica strain PNUSAS355639 SAMN35723131-rid18376663.guided.17, whole genome shotgun sequence	1014..1451	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEFO010000021.1 Salmonella enterica strain PNUSAS355639 SAMN35723131-rid18376663.denovo.23, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOEFO010000023.1 Salmonella enterica strain PNUSAS355639 SAMN35723131-rid18376663.denovo.26, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.93	374 / 374	ABOEFO010000017.1 Salmonella enterica strain PNUSAS355639 SAMN35723131-rid18376663.denovo.19, whole genome shotgun sequence	32011..32384																																									avrA	ABOEFO010000007.1	174926..175795	99.54	870	0						
GCA_032884255.1_PDT001777958.1_genomic.fna	Salmonella_enterica	0.5211	521.579 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOEFP010000001.1 Salmonella enterica strain PNUSAS355642 SAMN35723126-rid18376653.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOEFP010000025.1 Salmonella enterica strain PNUSAS355642 SAMN35723126-rid18376653.guided.15, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOEFP010000018.1 Salmonella enterica strain PNUSAS355642 SAMN35723126-rid18376653.denovo.21, whole genome shotgun sequence	239..369	enterobacteriales	ColpVC	96.89	193 / 193	ABOEFP010000020.1 Salmonella enterica strain PNUSAS355642 SAMN35723126-rid18376653.denovo.23, whole genome shotgun sequence	1524..1716		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEFP010000013.1 Salmonella enterica strain PNUSAS355642 SAMN35723126-rid18376653.denovo.13, whole genome shotgun sequence	75691..75832																																									avrA	ABOEFP010000006.1	175930..176799	99.425	870	0						
GCA_032884275.1_PDT001777957.1_genomic.fna	Salmonella_enterica	0.5211	283.028 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEFR010000001.1 Salmonella enterica strain PNUSAS355635 SAMN35723133-rid18376643.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEFR010000029.1 Salmonella enterica strain PNUSAS355635 SAMN35723133-rid18376643.guided.19, whole genome shotgun sequence	1266..1703	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEFR010000022.1 Salmonella enterica strain PNUSAS355635 SAMN35723133-rid18376643.denovo.25, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOEFR010000024.1 Salmonella enterica strain PNUSAS355635 SAMN35723133-rid18376643.denovo.27, whole genome shotgun sequence	3404..3665																																																avrA	ABOEFR010000007.1	176519..177388	99.54	870	0						
GCA_032884335.1_PDT001777954.1_genomic.fna	Salmonella_enterica	0.5221	396.478 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_690	3492	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI(Gamma)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_690	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEFU010000001.1 Salmonella enterica strain PNUSAS355637 SAMN35723128-rid18376243.denovo.01, whole genome shotgun sequence	177319..177756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEFU010000032.1 Salmonella enterica strain PNUSAS355637 SAMN35723128-rid18376243.guided.23, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI(Gamma)	90.52	116 / 141	ABOEFU010000016.1 Salmonella enterica strain PNUSAS355637 SAMN35723128-rid18376243.denovo.16, whole genome shotgun sequence	17012..17126																																																						avrA	ABOEFU010000013.1	39473..40342	99.77	870	0						
GCA_032884355.1_PDT001777953.1_genomic.fna	Salmonella_enterica	0.5212	238.552 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(B),tet(B)	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEFV010000001.1 Salmonella enterica strain PNUSAS355636 SAMN35723129-rid18376623.denovo.01, whole genome shotgun sequence	571348..571785	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEFV010000057.1 Salmonella enterica strain PNUSAS355636 SAMN35723129-rid18376623.guided.39, whole genome shotgun sequence	8847..9284	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOEFV010000045.1 Salmonella enterica strain PNUSAS355636 SAMN35723129-rid18376623.denovo.49, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOEFV010000058.1 Salmonella enterica strain PNUSAS355636 SAMN35723129-rid18376623.guided.51, whole genome shotgun sequence	946..1590	Ciprofloxacin	EU432277	tet(B)	100	1206/1206	ABOEFV010000002.1 Salmonella enterica strain PNUSAS355636 SAMN35723129-rid18376623.denovo.02, whole genome shotgun sequence	540358..541563	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOEFV010000056.1 Salmonella enterica strain PNUSAS355636 SAMN35723129-rid18376623.guided.38, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	100	131 / 131	ABOEFV010000045.1 Salmonella enterica strain PNUSAS355636 SAMN35723129-rid18376623.denovo.49, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOEFV010000058.1 Salmonella enterica strain PNUSAS355636 SAMN35723129-rid18376623.guided.51, whole genome shotgun sequence	290..420																																																avrA	ABOEFV010000002.1	434663..435532	99.885	870	0						
GCA_032884375.1_PDT001777952.1_genomic.fna	Salmonella_enterica	0.5206	489.864 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEFY010000001.1 Salmonella enterica strain PNUSAS355641 SAMN35723127-rid18376613.denovo.01, whole genome shotgun sequence	774378..774815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEFY010000026.1 Salmonella enterica strain PNUSAS355641 SAMN35723127-rid18376613.guided.18, whole genome shotgun sequence	1314..1751	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEFY010000012.1 Salmonella enterica strain PNUSAS355641 SAMN35723127-rid18376613.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOEFY010000016.1 Salmonella enterica strain PNUSAS355641 SAMN35723127-rid18376613.denovo.19, whole genome shotgun sequence	3393..3654		enterobacteriales	IncX1	98.93	374 / 374	ABOEFY010000013.1 Salmonella enterica strain PNUSAS355641 SAMN35723127-rid18376613.denovo.13, whole genome shotgun sequence	32011..32384																																									avrA	ABOEFY010000002.1	553696..554565	99.54	870	0						
GCA_032884855.1_PDT001777839.1_genomic.fna	Salmonella_enterica	0.5213	412.518 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEGJ010000001.1 Salmonella enterica strain PNUSAS355615 SAMN35717825-rid18375443.denovo.01, whole genome shotgun sequence	769962..770399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEGJ010000030.1 Salmonella enterica strain PNUSAS355615 SAMN35717825-rid18375443.guided.20, whole genome shotgun sequence	2688..3125	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEGJ010000019.1 Salmonella enterica strain PNUSAS355615 SAMN35717825-rid18375443.denovo.21, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOEGJ010000020.1 Salmonella enterica strain PNUSAS355615 SAMN35717825-rid18375443.denovo.23, whole genome shotgun sequence	3397..3658																																																avrA	ABOEGJ010000002.1	553551..554420	99.54	870	0						
GCA_032884875.1_PDT001777838.1_genomic.fna	Salmonella_enterica	0.5221	217.77 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEGL010000001.1 Salmonella enterica strain PNUSAS355625 SAMN35717822-rid18375433.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOEGL010000052.1 Salmonella enterica strain PNUSAS355625 SAMN35717822-rid18375433.guided.37, whole genome shotgun sequence	2925..3362	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEGL010000004.1	149875..150744	99.655	870	0						
GCA_032884895.1_PDT001777836.1_genomic.fna	Salmonella_enterica	0.5222	367.821 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOEGN010000001.1 Salmonella enterica strain PNUSAS355620 SAMN35717819-rid18375413.denovo.01, whole genome shotgun sequence	789130..789567	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOEGN010000037.1 Salmonella enterica strain PNUSAS355620 SAMN35717819-rid18375413.guided.26, whole genome shotgun sequence	7702..8139	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEGN010000006.1	131956..132825	98.966	870	0						
GCA_032884935.1_PDT001777837.1_genomic.fna	Salmonella_enterica	0.52	403.532 KB	5	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEGM010000006.1 Salmonella enterica strain PNUSAS355629 SAMN35717831-rid18375423.denovo.06, whole genome shotgun sequence	154465..154902	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEGM010000048.1 Salmonella enterica strain PNUSAS355629 SAMN35717831-rid18375423.guided.39, whole genome shotgun sequence	12..449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOEGM010000031.1 Salmonella enterica strain PNUSAS355629 SAMN35717831-rid18375423.denovo.32, whole genome shotgun sequence	1480..1610	enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOEGM010000035.1 Salmonella enterica strain PNUSAS355629 SAMN35717831-rid18375423.denovo.37, whole genome shotgun sequence	547..675																																																avrA	ABOEGM010000002.1	102881..103750	98.966	870	0						
GCA_032885025.1_PDT001777835.1_genomic.fna	Salmonella_enterica	0.5206	365.036 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEGO010000001.1 Salmonella enterica strain PNUSAS355618 SAMN35717828-rid18375403.denovo.01, whole genome shotgun sequence	543403..543840	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEGO010000036.1 Salmonella enterica strain PNUSAS355618 SAMN35717828-rid18375403.guided.19, whole genome shotgun sequence	6372..6809	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEGO010000008.1	140447..141316	99.54	870	0						
GCA_032885055.1_PDT001777834.1_genomic.fna	Salmonella_enterica	0.5211	489.739 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEGP010000001.1 Salmonella enterica strain PNUSAS355616 SAMN35717818-rid18375393.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEGP010000029.1 Salmonella enterica strain PNUSAS355616 SAMN35717818-rid18375393.guided.17, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEGP010000016.1 Salmonella enterica strain PNUSAS355616 SAMN35717818-rid18375393.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOEGP010000017.1 Salmonella enterica strain PNUSAS355616 SAMN35717818-rid18375393.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABOEGP010000002.1	553181..554050	99.54	870	0						
GCA_032885075.1_PDT001777833.1_genomic.fna	Salmonella_enterica	0.5206	227.877 KB	7	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEGQ010000004.1 Salmonella enterica strain PNUSAS355628 SAMN35717824-rid18375383.denovo.04, whole genome shotgun sequence	140501..140938	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEGQ010000069.1 Salmonella enterica strain PNUSAS355628 SAMN35717824-rid18375383.guided.20, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEGQ010000002.1	153272..154141	99.195	870	0						
GCA_032885095.1_PDT001777832.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEGR010000001.1 Salmonella enterica strain PNUSAS355623 SAMN35717827-rid18375373.denovo.01, whole genome shotgun sequence	769962..770399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEGR010000026.1 Salmonella enterica strain PNUSAS355623 SAMN35717827-rid18375373.guided.14, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEGR010000015.1 Salmonella enterica strain PNUSAS355623 SAMN35717827-rid18375373.denovo.16, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOEGR010000012.1 Salmonella enterica strain PNUSAS355623 SAMN35717827-rid18375373.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABOEGR010000002.1	553551..554420	99.54	870	0						
GCA_032885115.1_PDT001777831.1_genomic.fna	Salmonella_enterica	0.5211	406.92 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEGS010000001.1 Salmonella enterica strain PNUSAS355626 SAMN35717821-rid18375363.denovo.01, whole genome shotgun sequence	769962..770399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEGS010000031.1 Salmonella enterica strain PNUSAS355626 SAMN35717821-rid18375363.guided.16, whole genome shotgun sequence	34149..34586	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEGS010000020.1 Salmonella enterica strain PNUSAS355626 SAMN35717821-rid18375363.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOEGS010000021.1 Salmonella enterica strain PNUSAS355626 SAMN35717821-rid18375363.denovo.23, whole genome shotgun sequence	3403..3664																																																avrA	ABOEGS010000002.1	553551..554420	99.54	870	0						
GCA_032885215.1_PDT001777830.1_genomic.fna	Salmonella_enterica	0.5208	300.557 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEGT010000001.1 Salmonella enterica strain PNUSAS355621 SAMN35717830-rid18375353.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEGT010000043.1 Salmonella enterica strain PNUSAS355621 SAMN35717830-rid18375353.guided.23, whole genome shotgun sequence	2474..2911	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEGT010000023.1 Salmonella enterica strain PNUSAS355621 SAMN35717830-rid18375353.denovo.25, whole genome shotgun sequence	6850..7492	enterobacteriales	IncFII(S)	100	262 / 262	ABOEGT010000025.1 Salmonella enterica strain PNUSAS355621 SAMN35717830-rid18375353.denovo.27, whole genome shotgun sequence	3414..3675																																																avrA	ABOEGT010000002.1	174827..175696	99.54	870	0						
GCA_032885245.1_PDT001777828.1_genomic.fna	Salmonella_enterica	0.5198	308.406 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_503,thrA_4	2394	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCoo)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_503	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOEGU010000001.1 Salmonella enterica strain PNUSAS355622 SAMN35717823-rid18375333.denovo.01, whole genome shotgun sequence	343530..343967	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOEGU010000041.1 Salmonella enterica strain PNUSAS355622 SAMN35717823-rid18375333.guided.27, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCoo)	97.33	262 / 262	ABOEGU010000024.1 Salmonella enterica strain PNUSAS355622 SAMN35717823-rid18375333.denovo.26, whole genome shotgun sequence	10836..11097																																																						avrA	ABOEGU010000002.1	497218..498086	99.425	870	0						
GCA_032885255.1_PDT001777829.1_genomic.fna	Salmonella_enterica	0.5226	533.166 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEGV010000001.1 Salmonella enterica strain PNUSAS355624 SAMN35717826-rid18375343.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEGV010000038.1 Salmonella enterica strain PNUSAS355624 SAMN35717826-rid18375343.guided.17, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEGV010000003.1	147026..147895	98.966	870	0						
GCA_032885285.1_PDT001777827.1_genomic.fna	Salmonella_enterica	0.5214	729.342 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEGW010000001.1 Salmonella enterica strain PNUSAS355627 SAMN35717829-rid18375323.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEGW010000027.1 Salmonella enterica strain PNUSAS355627 SAMN35717829-rid18375323.guided.18, whole genome shotgun sequence	5082..5519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEGW010000016.1 Salmonella enterica strain PNUSAS355627 SAMN35717829-rid18375323.denovo.17, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOEGW010000013.1 Salmonella enterica strain PNUSAS355627 SAMN35717829-rid18375323.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABOEGW010000003.1	553637..554506	99.54	870	0						
GCA_032885315.1_PDT001777826.1_genomic.fna	Salmonella_enterica	0.5215	321.441 KB	6	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEGY010000002.1 Salmonella enterica strain PNUSAS355619 SAMN35717820-rid18375313.denovo.02, whole genome shotgun sequence	348288..348725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEGY010000054.1 Salmonella enterica strain PNUSAS355619 SAMN35717820-rid18375313.guided.25, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEGY010000009.1	140447..141316	99.54	870	0						
GCA_032885395.1_PDT001777825.1_genomic.fna	Salmonella_enterica	0.5217	354.182 KB	5	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEGX010000001.1 Salmonella enterica strain PNUSAS355617 SAMN35717817-rid18375303.denovo.01, whole genome shotgun sequence	481589..482026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOEGX010000084.1 Salmonella enterica strain PNUSAS355617 SAMN35717817-rid18375303.guided.21, whole genome shotgun sequence	31765..32202	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEGX010000006.1	93863..94732	99.77	870	0						
GCA_032886815.1_PDT001777787.1_genomic.fna	Salmonella_enterica	0.5212	283.916 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEHU010000002.1 Salmonella enterica strain PNUSAS355562 SAMN35716213-rid18373453.denovo.02, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEHU010000037.1 Salmonella enterica strain PNUSAS355562 SAMN35716213-rid18373453.guided.24, whole genome shotgun sequence	14572..15009	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEHU010000020.1 Salmonella enterica strain PNUSAS355562 SAMN35716213-rid18373453.denovo.20, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOEHU010000020.1 Salmonella enterica strain PNUSAS355562 SAMN35716213-rid18373453.denovo.20, whole genome shotgun sequence	5032..5293																																																avrA	ABOEHU010000008.1	175196..176065	99.54	870	0						
GCA_032886855.1_PDT001777771.1_genomic.fna	Salmonella_enterica	0.5208	409.393 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEHZ010000001.1 Salmonella enterica strain PNUSAS355224 SAMN35716172-rid18375093.denovo.01, whole genome shotgun sequence	799119..799556	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEHZ010000030.1 Salmonella enterica strain PNUSAS355224 SAMN35716172-rid18375093.guided.21, whole genome shotgun sequence	3126..3563	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOEHZ010000016.1 Salmonella enterica strain PNUSAS355224 SAMN35716172-rid18375093.denovo.16, whole genome shotgun sequence	2730..3263																																																						avrA	ABOEHZ010000009.1	150695..151565	99.196	871	0						
GCA_032886875.1_PDT001777784.1_genomic.fna	Salmonella_enterica	0.5203	134.038 KB	11	aroC_110,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2711	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(pCRY),IncI1-I(Alpha)	aroC	100	100	aroC_110	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOEHW010000001.1 Salmonella enterica strain PNUSAS355235 SAMN35716152-rid18373443.denovo.01, whole genome shotgun sequence	42641..43078	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOEHW010000068.1 Salmonella enterica strain PNUSAS355235 SAMN35716152-rid18373443.guided.47, whole genome shotgun sequence	10647..11084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOEHW010000040.1 Salmonella enterica strain PNUSAS355235 SAMN35716152-rid18373443.denovo.40, whole genome shotgun sequence	2610..3252	enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABOEHW010000043.1 Salmonella enterica strain PNUSAS355235 SAMN35716152-rid18373443.denovo.43, whole genome shotgun sequence	18534..19126		enterobacteriales	IncI1-I(Alpha)	95.65	138 / 142	ABOEHW010000024.1 Salmonella enterica strain PNUSAS355235 SAMN35716152-rid18373443.denovo.24, whole genome shotgun sequence	17292..17427																																																				
GCA_032886895.1_PDT001777785.1_genomic.fna	Salmonella_enterica	0.5222	318.252 KB	6	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		1	Col(pHAD28)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOEHV010000002.1 Salmonella enterica strain PNUSAS354253 SAMN35716136-rid18371943.denovo.02, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOEHV010000042.1 Salmonella enterica strain PNUSAS354253 SAMN35716136-rid18371943.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOEHV010000029.1 Salmonella enterica strain PNUSAS354253 SAMN35716136-rid18371943.denovo.32, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOEHV010000044.1 Salmonella enterica strain PNUSAS354253 SAMN35716136-rid18371943.guided.33, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOEHV010000029.1 Salmonella enterica strain PNUSAS354253 SAMN35716136-rid18371943.denovo.32, whole genome shotgun sequence	1522..1652																																																						avrA	ABOEHV010000007.1	43272..44141	99.77	870	0						
GCA_032886975.1_PDT001777788.1_genomic.fna	Salmonella_enterica	0.5201	525.767 KB	4	aroC_152,dnaN_14,hemD_344,hisD_551,purE_89,sucA_313,thrA_2	1891	13:i:1,5	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	2	Col(pHAD28),Col440I,Col440I	aroC	100	100	aroC_152	dnaN	100	100	dnaN_14	hemD	100	100	hemD_344	hisD	100	100	hisD_551	purE	100	100	purE_89	sucA	100	100	sucA_313	thrA	100	100	thrA_2	13	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	Idikan		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOEHT010000001.1 Salmonella enterica strain PNUSAS354276 SAMN35716133-rid18371953.denovo.01, whole genome shotgun sequence	153857..154294	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOEHT010000039.1 Salmonella enterica strain PNUSAS354276 SAMN35716133-rid18371953.guided.19, whole genome shotgun sequence	41773..42210	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOEHT010000002.1 Salmonella enterica strain PNUSAS354276 SAMN35716133-rid18371953.denovo.02, whole genome shotgun sequence	391371..391793	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOEHT010000040.1 Salmonella enterica strain PNUSAS354276 SAMN35716133-rid18371953.guided.22, whole genome shotgun sequence	17214..17636	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOEHT010000027.1 Salmonella enterica strain PNUSAS354276 SAMN35716133-rid18371953.denovo.31, whole genome shotgun sequence	1461..1591	enterobacteriales	Col440I	93.64	110 / 114	ABOEHT010000022.1 Salmonella enterica strain PNUSAS354276 SAMN35716133-rid18371953.denovo.26, whole genome shotgun sequence	1189..1298		enterobacteriales	Col440I	94.74	114 / 114	ABOEHT010000025.1 Salmonella enterica strain PNUSAS354276 SAMN35716133-rid18371953.denovo.29, whole genome shotgun sequence	787..900																																																				
GCA_032887015.1_PDT001777777.1_genomic.fna	Salmonella_enterica	0.5222	478.571 KB	4	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOEHX010000001.1 Salmonella enterica strain PNUSAS355252 SAMN35716184-rid18373413.denovo.01, whole genome shotgun sequence	755810..756247	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOEHX010000026.1 Salmonella enterica strain PNUSAS355252 SAMN35716184-rid18373413.guided.19, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOEHX010000014.1 Salmonella enterica strain PNUSAS355252 SAMN35716184-rid18373413.denovo.14, whole genome shotgun sequence	6073..6606																																																						avrA	ABOEHX010000003.1	509637..510506	99.54	870	0						
GCA_032887155.1_PDT001948652.1_genomic.fna	Salmonella_enterica	0.5162	246.257 KB	7	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	IncFIB(pB171),IncFII,IncFII(pCRY),IncI1-I(Alpha)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABOEIB010000008.1 Salmonella enterica strain PNUSAS393798 SAMN37898876-rid19914143.denovo.08, whole genome shotgun sequence	6875..7312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABOEIB010000071.1 Salmonella enterica strain PNUSAS393798 SAMN37898876-rid19914143.guided.44, whole genome shotgun sequence	4407..4844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABOEIB010000009.1 Salmonella enterica strain PNUSAS393798 SAMN37898876-rid19914143.denovo.09, whole genome shotgun sequence	167525..168167	enterobacteriales	IncFII	100	261 / 261	ABOEIB010000025.1 Salmonella enterica strain PNUSAS393798 SAMN37898876-rid19914143.denovo.25, whole genome shotgun sequence	9096..9356		enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABOEIB010000037.1 Salmonella enterica strain PNUSAS393798 SAMN37898876-rid19914143.denovo.39, whole genome shotgun sequence	8801..9393		enterobacteriales	IncI1-I(Alpha)	98.59	142 / 142	ABOEIB010000018.1 Salmonella enterica strain PNUSAS393798 SAMN37898876-rid19914143.denovo.18, whole genome shotgun sequence	67454..67595																																													
GCA_032887175.1_PDT001948631.1_genomic.fna	Salmonella_enterica	0.517	350.037 KB	5	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABOEID010000002.1 Salmonella enterica strain PNUSAS393803 SAMN37898881-rid19913933.denovo.02, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABOEID010000066.1 Salmonella enterica strain PNUSAS393803 SAMN37898881-rid19913933.guided.37, whole genome shotgun sequence	4407..4844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABOEID010000009.1 Salmonella enterica strain PNUSAS393803 SAMN37898881-rid19913933.denovo.09, whole genome shotgun sequence	157648..158290																																																																	
GCA_032887195.1_PDT001948643.1_genomic.fna	Salmonella_enterica	0.5169	246.066 KB	7	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABOEIC010000008.1 Salmonella enterica strain PNUSAS393776 SAMN37898888-rid19914053.denovo.08, whole genome shotgun sequence	7116..7553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABOEIC010000069.1 Salmonella enterica strain PNUSAS393776 SAMN37898888-rid19914053.guided.31, whole genome shotgun sequence	4407..4844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABOEIC010000011.1 Salmonella enterica strain PNUSAS393776 SAMN37898888-rid19914053.denovo.11, whole genome shotgun sequence	128421..129063	enterobacteriales	IncFII(pCRY)	94.94	593 / 593	ABOEIC010000033.1 Salmonella enterica strain PNUSAS393776 SAMN37898888-rid19914053.denovo.34, whole genome shotgun sequence	1801..2393																																																											
GCA_032887255.1_PDT001948619.1_genomic.fna	Salmonella_enterica	0.5197	219.644 KB	8	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEIE010000001.1 Salmonella enterica strain PNUSAS393809 SAMN37898839-rid19913813.denovo.01, whole genome shotgun sequence	486071..486508	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEIE010000045.1 Salmonella enterica strain PNUSAS393809 SAMN37898839-rid19913813.guided.19, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOEIE010000003.1 Salmonella enterica strain PNUSAS393809 SAMN37898839-rid19913813.denovo.03, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOEIE010000046.1 Salmonella enterica strain PNUSAS393809 SAMN37898839-rid19913813.guided.35, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEIE010000002.1	39419..40288	99.195	870	0						
GCA_032887295.1_PDT001948600.1_genomic.fna	Salmonella_enterica	0.517	304.306 KB	7	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	44:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	44	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 44:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABOEIF010000009.1 Salmonella enterica strain PNUSAS393760 SAMN37898706-rid19913623.denovo.09, whole genome shotgun sequence	4992..5429	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABOEIF010000057.1 Salmonella enterica strain PNUSAS393760 SAMN37898706-rid19913623.guided.27, whole genome shotgun sequence	4359..4796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032887355.1_PDT001777782.1_genomic.fna	Salmonella_enterica	0.5222	443.634 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEII010000001.1 Salmonella enterica strain PNUSAS355238 SAMN35716155-rid18373433.denovo.01, whole genome shotgun sequence	833828..834265	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEII010000029.1 Salmonella enterica strain PNUSAS355238 SAMN35716155-rid18373433.guided.19, whole genome shotgun sequence	9012..9449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEII010000002.1	183135..184004	98.966	870	0						
GCA_032887375.1_PDT001948594.1_genomic.fna	Salmonella_enterica	0.5211	439.376 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEIG010000001.1 Salmonella enterica strain PNUSAS393747 SAMN37898719-rid19913563.denovo.01, whole genome shotgun sequence	656812..657249	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOEIG010000063.1 Salmonella enterica strain PNUSAS393747 SAMN37898719-rid19913563.guided.25, whole genome shotgun sequence	17348..17785	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABOEIG010000018.1 Salmonella enterica strain PNUSAS393747 SAMN37898719-rid19913563.denovo.18, whole genome shotgun sequence	17427..18069																																																						avrA	ABOEIG010000003.1	573892..574760	99.655	870	0						
GCA_032887405.1_PDT001777786.1_genomic.fna	Salmonella_enterica	0.5204	269.515 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEIH010000002.1 Salmonella enterica strain PNUSAS355240 SAMN35716158-rid18375133.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEIH010000048.1 Salmonella enterica strain PNUSAS355240 SAMN35716158-rid18375133.guided.30, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOEIH010000023.1 Salmonella enterica strain PNUSAS355240 SAMN35716158-rid18375133.denovo.24, whole genome shotgun sequence	44719..45361	enterobacteriales	IncFII(S)	100	262 / 262	ABOEIH010000023.1 Salmonella enterica strain PNUSAS355240 SAMN35716158-rid18375133.denovo.24, whole genome shotgun sequence	29373..29634		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEIH010000018.1 Salmonella enterica strain PNUSAS355240 SAMN35716158-rid18375133.denovo.18, whole genome shotgun sequence	70824..70965																																									avrA	ABOEIH010000007.1	95302..96170	100	869	0						
GCA_032887455.1_PDT001777776.1_genomic.fna	Salmonella_enterica	0.5216	197.059 KB	7	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEIK010000002.1 Salmonella enterica strain PNUSAS354274 SAMN35716145-rid18375103.denovo.02, whole genome shotgun sequence	462162..462599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEIK010000046.1 Salmonella enterica strain PNUSAS354274 SAMN35716145-rid18375103.guided.31, whole genome shotgun sequence	9210..9647	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEIK010000001.1	585339..586208	99.195	870	0						
GCA_032887465.1_PDT001777778.1_genomic.fna	Salmonella_enterica	0.5211	489.521 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEIJ010000001.1 Salmonella enterica strain PNUSAS355245 SAMN35716161-rid18371923.denovo.01, whole genome shotgun sequence	817596..818033	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEIJ010000024.1 Salmonella enterica strain PNUSAS355245 SAMN35716161-rid18371923.guided.19, whole genome shotgun sequence	9349..9786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEIJ010000016.1 Salmonella enterica strain PNUSAS355245 SAMN35716161-rid18371923.denovo.17, whole genome shotgun sequence	6802..7444	enterobacteriales	IncFII(S)	100	262 / 262	ABOEIJ010000017.1 Salmonella enterica strain PNUSAS355245 SAMN35716161-rid18371923.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABOEIJ010000002.1	553182..554051	99.54	870	0						
GCA_032887575.1_PDT001777773.1_genomic.fna	Salmonella_enterica	0.5214	203.249 KB	9	aroC_83,dnaN_46,hemD_25,hisD_148,purE_33,sucA_23,thrA_63	450	13:d:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_83	dnaN	100	100	dnaN_46	hemD	100	100	hemD_25	hisD	100	100	hisD_148	purE	100	100	purE_33	sucA	100	100	sucA_23	thrA	100	100	thrA_63	13	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Telelkebir		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOEIM010000002.1 Salmonella enterica strain PNUSAS355566 SAMN35716201-rid18371913.denovo.02, whole genome shotgun sequence	37901..38338	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOEIM010000052.1 Salmonella enterica strain PNUSAS355566 SAMN35716201-rid18371913.guided.36, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABOEIM010000008.1 Salmonella enterica strain PNUSAS355566 SAMN35716201-rid18371913.denovo.08, whole genome shotgun sequence	30450..30872	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABOEIM010000053.1 Salmonella enterica strain PNUSAS355566 SAMN35716201-rid18371913.guided.37, whole genome shotgun sequence	17825..18247	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032887595.1_PDT001777775.1_genomic.fna	Salmonella_enterica	0.5227	269.597 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEIL010000001.1 Salmonella enterica strain PNUSAS355567 SAMN35716216-rid18373403.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOEIL010000039.1 Salmonella enterica strain PNUSAS355567 SAMN35716216-rid18373403.guided.24, whole genome shotgun sequence	12387..12824	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEIL010000007.1	124291..125160	99.655	870	0						
GCA_032887615.1_PDT001777769.1_genomic.fna	Salmonella_enterica	0.521	284.073 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEIN010000001.1 Salmonella enterica strain 1157013001 SAMN35716146-rid18375083.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEIN010000030.1 Salmonella enterica strain 1157013001 SAMN35716146-rid18375083.guided.17, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEIN010000020.1 Salmonella enterica strain 1157013001 SAMN35716146-rid18375083.denovo.23, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOEIN010000022.1 Salmonella enterica strain 1157013001 SAMN35716146-rid18375083.denovo.25, whole genome shotgun sequence	3402..3663																																																avrA	ABOEIN010000002.1	554917..555786	99.54	870	0						
GCA_032888665.1_PDT001777767.1_genomic.fna	Salmonella_enterica	0.5222	198.434 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEIQ010000001.1 Salmonella enterica strain PNUSAS355227 SAMN35716178-rid18373363.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEIQ010000041.1 Salmonella enterica strain PNUSAS355227 SAMN35716178-rid18373363.guided.31, whole genome shotgun sequence	6757..7194	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEIQ010000003.1	218367..219235	99.77	870	0						
GCA_032888685.1_PDT001777772.1_genomic.fna	Salmonella_enterica	0.5202	257.544 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		5	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI2,IncM1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEIO010000001.1 Salmonella enterica strain PNUSAS355226 SAMN35716175-rid18373383.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEIO010000053.1 Salmonella enterica strain PNUSAS355226 SAMN35716175-rid18373383.guided.27, whole genome shotgun sequence	34227..34664	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOEIO010000027.1 Salmonella enterica strain PNUSAS355226 SAMN35716175-rid18373383.denovo.28, whole genome shotgun sequence	44723..45365	enterobacteriales	IncFII(S)	100	262 / 262	ABOEIO010000027.1 Salmonella enterica strain PNUSAS355226 SAMN35716175-rid18373383.denovo.28, whole genome shotgun sequence	29377..29638		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEIO010000025.1 Salmonella enterica strain PNUSAS355226 SAMN35716175-rid18373383.denovo.25, whole genome shotgun sequence	41660..41801		enterobacteriales	IncI2	100	324 / 324	ABOEIO010000024.1 Salmonella enterica strain PNUSAS355226 SAMN35716175-rid18373383.denovo.24, whole genome shotgun sequence	30252..30575		enterobacteriales	IncM1	99.59	739 / 739	ABOEIO010000026.1 Salmonella enterica strain PNUSAS355226 SAMN35716175-rid18373383.denovo.26, whole genome shotgun sequence	19756..20494																											avrA	ABOEIO010000003.1	209222..210090	100	869	0						
GCA_032888705.1_PDT001777768.1_genomic.fna	Salmonella_enterica	0.5212	111.882 KB	14	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOEIP010000007.1 Salmonella enterica strain PNUSAS355563 SAMN35716210-rid18371903.denovo.07, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOEIP010000077.1 Salmonella enterica strain PNUSAS355563 SAMN35716210-rid18371903.guided.56, whole genome shotgun sequence	14447..14881	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032888725.1_PDT001777765.1_genomic.fna	Salmonella_enterica	0.5231	188.351 KB	8	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEIS010000006.1 Salmonella enterica strain PNUSAS355555 SAMN35716220-rid18373353.denovo.06, whole genome shotgun sequence	170344..170781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEIS010000051.1 Salmonella enterica strain PNUSAS355555 SAMN35716220-rid18373353.guided.36, whole genome shotgun sequence	20052..20489	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032888745.1_PDT001777766.1_genomic.fna	Salmonella_enterica	0.5207	245.694 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,blaCMY-2,sul2,sul2,sul2,tet(A),tet(A)	0		4	Col(pHAD28),Col440I,ColpVC,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEIR010000002.1 Salmonella enterica strain PNUSAS354268 SAMN35716139-rid18375073.denovo.02, whole genome shotgun sequence	24934..25371	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEIR010000055.1 Salmonella enterica strain PNUSAS354268 SAMN35716139-rid18375073.guided.37, whole genome shotgun sequence	7785..8222	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOEIR010000004.1 Salmonella enterica strain PNUSAS354268 SAMN35716139-rid18375073.denovo.04, whole genome shotgun sequence	199350..200495	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEIR010000057.1 Salmonella enterica strain PNUSAS354268 SAMN35716139-rid18375073.guided.42, whole genome shotgun sequence	3426..4571	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	99.91	1146/1146	ABOEIR010000058.1 Salmonella enterica strain PNUSAS354268 SAMN35716139-rid18375073.guided.43, whole genome shotgun sequence	3426..4571	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOEIR010000034.1 Salmonella enterica strain PNUSAS354268 SAMN35716139-rid18375073.denovo.35, whole genome shotgun sequence	23474..24289	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEIR010000060.1 Salmonella enterica strain PNUSAS354268 SAMN35716139-rid18375073.guided.48, whole genome shotgun sequence	3131..3946	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABOEIR010000061.1 Salmonella enterica strain PNUSAS354268 SAMN35716139-rid18375073.guided.49, whole genome shotgun sequence	3131..3946	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOEIR010000034.1 Salmonella enterica strain PNUSAS354268 SAMN35716139-rid18375073.denovo.35, whole genome shotgun sequence	26466..27665	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOEIR010000059.1 Salmonella enterica strain PNUSAS354268 SAMN35716139-rid18375073.guided.47, whole genome shotgun sequence	1654..2853	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOEIR010000041.1 Salmonella enterica strain PNUSAS354268 SAMN35716139-rid18375073.denovo.46, whole genome shotgun sequence	371..501	enterobacteriales	Col440I	93.81	113 / 114	ABOEIR010000043.1 Salmonella enterica strain PNUSAS354268 SAMN35716139-rid18375073.denovo.51, whole genome shotgun sequence	2528..2639		enterobacteriales	ColpVC	98.96	193 / 193	ABOEIR010000047.1 Salmonella enterica strain PNUSAS354268 SAMN35716139-rid18375073.denovo.55, whole genome shotgun sequence	805..997		enterobacteriales	IncC	100	417 / 417	ABOEIR010000017.1 Salmonella enterica strain PNUSAS354268 SAMN35716139-rid18375073.denovo.17, whole genome shotgun sequence	69095..69511																																		avrA	ABOEIR010000004.1	148824..149693	99.885	870	0						
GCA_032888765.1_PDT001777758.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEIU010000001.1 Salmonella enterica strain PNUSAS355232 SAMN35716149-rid18371883.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEIU010000026.1 Salmonella enterica strain PNUSAS355232 SAMN35716149-rid18371883.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEIU010000015.1 Salmonella enterica strain PNUSAS355232 SAMN35716149-rid18371883.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOEIU010000016.1 Salmonella enterica strain PNUSAS355232 SAMN35716149-rid18371883.denovo.19, whole genome shotgun sequence	3404..3665																																																avrA	ABOEIU010000002.1	553635..554504	99.54	870	0						
GCA_032888785.1_PDT001777764.1_genomic.fna	Salmonella_enterica	0.5207	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),pKPC-CAV1193	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEIT010000001.1 Salmonella enterica strain PNUSAS355248 SAMN35716164-rid18373343.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEIT010000028.1 Salmonella enterica strain PNUSAS355248 SAMN35716164-rid18373343.guided.16, whole genome shotgun sequence	41906..42343	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEIT010000020.1 Salmonella enterica strain PNUSAS355248 SAMN35716164-rid18373343.denovo.22, whole genome shotgun sequence	6827..7469	enterobacteriales	IncFII(S)	100	262 / 262	ABOEIT010000021.1 Salmonella enterica strain PNUSAS355248 SAMN35716164-rid18373343.denovo.24, whole genome shotgun sequence	3397..3658		enterobacteriales	pKPC-CAV1193	98.2	612 / 612	ABOEIT010000018.1 Salmonella enterica strain PNUSAS355248 SAMN35716164-rid18373343.denovo.20, whole genome shotgun sequence	15001..15612																																									avrA	ABOEIT010000002.1	553636..554505	99.54	870	0						
GCA_032888805.1_PDT001777757.1_genomic.fna	Salmonella_enterica	0.5218	341.573 KB	4	aroC_11,dnaN_10,hemD_13,hisD_13,purE_10,sucA_13,thrA_4	20	4:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEIV010000001.1 Salmonella enterica strain PNUSAS354271 SAMN35716142-rid18373313.denovo.01, whole genome shotgun sequence	708645..709082	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEIV010000029.1 Salmonella enterica strain PNUSAS354271 SAMN35716142-rid18373313.guided.24, whole genome shotgun sequence	7792..8229	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABOEIV010000004.1 Salmonella enterica strain PNUSAS354271 SAMN35716142-rid18373313.denovo.04, whole genome shotgun sequence	155082..155504	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABOEIV010000031.1 Salmonella enterica strain PNUSAS354271 SAMN35716142-rid18373313.guided.27, whole genome shotgun sequence	2305..2727	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032888845.1_PDT001777755.1_genomic.fna	Salmonella_enterica	0.5217	257.842 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	3	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEIX010000002.1 Salmonella enterica strain PNUSAS354250 SAMN35716130-rid18373303.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOEIX010000017.1 Salmonella enterica strain PNUSAS354250 SAMN35716130-rid18373303.denovo.17, whole genome shotgun sequence	72429..73331	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABOEIX010000017.1 Salmonella enterica strain PNUSAS354250 SAMN35716130-rid18373303.denovo.17, whole genome shotgun sequence	71474..72265	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	99.77	438/438	ABOEIX010000038.1 Salmonella enterica strain PNUSAS354250 SAMN35716130-rid18373303.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOEIX010000040.1 Salmonella enterica strain PNUSAS354250 SAMN35716130-rid18373303.guided.30, whole genome shotgun sequence	6823..7725	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABOEIX010000040.1 Salmonella enterica strain PNUSAS354250 SAMN35716130-rid18373303.guided.30, whole genome shotgun sequence	5868..6659	Spectinomycin, Streptomycin	JQ414041																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFIB(S)	100	643 / 643	ABOEIX010000018.1 Salmonella enterica strain PNUSAS354250 SAMN35716130-rid18373303.denovo.18, whole genome shotgun sequence	86311..86953	enterobacteriales	IncFII(S)	100	262 / 262	ABOEIX010000018.1 Salmonella enterica strain PNUSAS354250 SAMN35716130-rid18373303.denovo.18, whole genome shotgun sequence	70965..71226		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEIX010000017.1 Salmonella enterica strain PNUSAS354250 SAMN35716130-rid18373303.denovo.17, whole genome shotgun sequence	81509..81650		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEIX010000040.1 Salmonella enterica strain PNUSAS354250 SAMN35716130-rid18373303.guided.30, whole genome shotgun sequence	15903..16044																																		avrA	ABOEIX010000001.1	446736..447604	100	869	0						
GCA_032888865.1_PDT001777752.1_genomic.fna	Salmonella_enterica	0.5203	440.064 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEIZ010000002.1 Salmonella enterica strain PNUSAS355594 SAMN35716284-rid18373283.denovo.02, whole genome shotgun sequence	288058..288495	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEIZ010000027.1 Salmonella enterica strain PNUSAS355594 SAMN35716284-rid18373283.guided.15, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEIZ010000015.1 Salmonella enterica strain PNUSAS355594 SAMN35716284-rid18373283.denovo.16, whole genome shotgun sequence	36763..37405	enterobacteriales	IncFII(S)	100	262 / 262	ABOEIZ010000015.1 Salmonella enterica strain PNUSAS355594 SAMN35716284-rid18373283.denovo.16, whole genome shotgun sequence	42855..43116		enterobacteriales	IncX1	98.94	377 / 377	ABOEIZ010000017.1 Salmonella enterica strain PNUSAS355594 SAMN35716284-rid18373283.denovo.19, whole genome shotgun sequence	6229..6605																																									avrA	ABOEIZ010000001.1	553190..554059	99.54	870	0						
GCA_032888885.1_PDT001777753.1_genomic.fna	Salmonella_enterica	0.5222	649.41 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEIY010000001.1 Salmonella enterica strain PNUSAS355323 SAMN35716105-rid18371873.denovo.01, whole genome shotgun sequence	1108110..1108547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOEIY010000016.1 Salmonella enterica strain PNUSAS355323 SAMN35716105-rid18371873.guided.13, whole genome shotgun sequence	8109..8546	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEIY010000003.1	553560..554429	99.77	870	0						
GCA_032888905.1_PDT001777751.1_genomic.fna	Salmonella_enterica	0.5125	318.871 KB	6	aroC_451,dnaN_26,hemD_339,hisD_460,purE_21,sucA_353,thrA_471	2631	48:z52:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col156,IncFII(S)	aroC	100	100	aroC_451	dnaN	100	100	dnaN_26	hemD	100	100	hemD_339	hisD	100	100	hisD_460	purE	100	100	purE_21	sucA	100	100	sucA_353	thrA	100	100	thrA_471	48	z52	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:z52:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEJA010000005.1 Salmonella enterica strain PNUSAS355593 SAMN35716285-rid18375033.denovo.05, whole genome shotgun sequence	173795..174232	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOEJA010000050.1 Salmonella enterica strain PNUSAS355593 SAMN35716285-rid18375033.guided.26, whole genome shotgun sequence	4065..4502	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	ABOEJA010000029.1 Salmonella enterica strain PNUSAS355593 SAMN35716285-rid18375033.denovo.33, whole genome shotgun sequence	792..945	enterobacteriales	IncFII(S)	94.72	265 / 262	ABOEJA010000015.1 Salmonella enterica strain PNUSAS355593 SAMN35716285-rid18375033.denovo.15, whole genome shotgun sequence	73615..73877																																																avrA	ABOEJA010000002.1	144597..145466	96.552	870	0						
GCA_032889005.1_PDT001777750.1_genomic.fna	Salmonella_enterica	0.5229	334.925 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEJB010000001.1 Salmonella enterica strain PNUSAS355320 SAMN35716102-rid18373273.denovo.01, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEJB010000029.1 Salmonella enterica strain PNUSAS355320 SAMN35716102-rid18373273.guided.21, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032889265.1_PDT001948501.1_genomic.fna	Salmonella_enterica	0.5224	562.08 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABODNO010000001.1 Salmonella enterica strain PNUSAS393675 SAMN37887143-rid19912773.denovo.01, whole genome shotgun sequence	513791..514228	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABODNO010000024.1 Salmonella enterica strain PNUSAS393675 SAMN37887143-rid19912773.guided.11, whole genome shotgun sequence	9074..9511	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABODNO010000004.1	151330..152199	99.77	870	0						
GCA_032889305.1_PDT001777749.1_genomic.fna	Salmonella_enterica	0.5212	269.88 KB	7	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEJF010000001.1 Salmonella enterica strain PNUSAS355561 SAMN35716212-rid18375023.denovo.01, whole genome shotgun sequence	483030..483467	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEJF010000037.1 Salmonella enterica strain PNUSAS355561 SAMN35716212-rid18375023.guided.30, whole genome shotgun sequence	10533..10970	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEJF010000006.1	90024..90893	99.425	870	0						
GCA_032889325.1_PDT001777748.1_genomic.fna	Salmonella_enterica	0.5213	218.488 KB	7	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEJG010000012.1 Salmonella enterica strain PNUSAS355329 SAMN35716053-rid18371863.denovo.12, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEJG010000046.1 Salmonella enterica strain PNUSAS355329 SAMN35716053-rid18371863.guided.35, whole genome shotgun sequence	23030..23467	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOEJG010000022.1 Salmonella enterica strain PNUSAS355329 SAMN35716053-rid18371863.denovo.22, whole genome shotgun sequence	34957..35490																																																						avrA	ABOEJG010000001.1	124387..125253	98.851	870	0						
GCA_032889345.1_PDT001777783.1_genomic.fna	Salmonella_enterica	0.5201	270.794 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEJD010000001.1 Salmonella enterica strain PNUSAS355559 SAMN35716199-rid18371933.denovo.01, whole genome shotgun sequence	486123..486560	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEJD010000052.1 Salmonella enterica strain PNUSAS355559 SAMN35716199-rid18371933.guided.38, whole genome shotgun sequence	1619..2056	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOEJD010000005.1 Salmonella enterica strain PNUSAS355559 SAMN35716199-rid18371933.denovo.05, whole genome shotgun sequence	268061..268483	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOEJD010000050.1 Salmonella enterica strain PNUSAS355559 SAMN35716199-rid18371933.guided.36, whole genome shotgun sequence	6430..6852	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEJD010000002.1	122302..123171	99.195	870	0						
GCA_032889365.1_PDT001777742.1_genomic.fna	Salmonella_enterica	0.5211	400.829 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEJJ010000001.1 Salmonella enterica strain PNUSAS355556 SAMN35716203-rid18374993.denovo.01, whole genome shotgun sequence	651919..652356	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEJJ010000024.1 Salmonella enterica strain PNUSAS355556 SAMN35716203-rid18374993.guided.18, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEJJ010000014.1 Salmonella enterica strain PNUSAS355556 SAMN35716203-rid18374993.denovo.14, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABOEJJ010000014.1 Salmonella enterica strain PNUSAS355556 SAMN35716203-rid18374993.denovo.14, whole genome shotgun sequence	53092..53353																																																avrA	ABOEJJ010000002.1	553426..554295	99.54	870	0						
GCA_032889385.1_PDT001777746.1_genomic.fna	Salmonella_enterica	0.5225	332.888 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEJH010000001.1 Salmonella enterica strain PNUSAS354251 SAMN35716117-rid18375003.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOEJH010000035.1 Salmonella enterica strain PNUSAS354251 SAMN35716117-rid18375003.guided.25, whole genome shotgun sequence	10439..10876	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEJH010000002.1	149828..150697	99.655	870	0						
GCA_032889405.1_PDT001777745.1_genomic.fna	Salmonella_enterica	0.5217	611.403 KB	3	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOEJI010000001.1 Salmonella enterica strain PNUSAS355324 SAMN35716108-rid18373263.denovo.01, whole genome shotgun sequence	492161..492598	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOEJI010000025.1 Salmonella enterica strain PNUSAS355324 SAMN35716108-rid18373263.guided.20, whole genome shotgun sequence	122..559	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEJI010000002.1	575515..576383	99.655	869	0						
GCA_032889425.1_PDT001777740.1_genomic.fna	Salmonella_enterica	0.5206	174.553 KB	10	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEJL010000004.1 Salmonella enterica strain PNUSAS355228 SAMN35716180-rid18373233.denovo.04, whole genome shotgun sequence	270851..271288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEJL010000058.1 Salmonella enterica strain PNUSAS355228 SAMN35716180-rid18373233.guided.46, whole genome shotgun sequence	3305..3742	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABOEJL010000026.1 Salmonella enterica strain PNUSAS355228 SAMN35716180-rid18373233.denovo.26, whole genome shotgun sequence	62748..63390																																																																	
GCA_032889445.1_PDT001777738.1_genomic.fna	Salmonella_enterica	0.5215	205.429 KB	7	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_19,thrA_1	679	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEJM010000006.1 Salmonella enterica strain PNUSAS355244 SAMN35716183-rid18371853.denovo.06, whole genome shotgun sequence	136419..136856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEJM010000052.1 Salmonella enterica strain PNUSAS355244 SAMN35716183-rid18371853.guided.36, whole genome shotgun sequence	5721..6158	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEJM010000007.1	100892..101757	98.966	870	0						
GCA_032889465.1_PDT001777741.1_genomic.fna	Salmonella_enterica	0.521	321.676 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEJK010000001.1 Salmonella enterica strain PNUSAS355565 SAMN35716200-rid18374983.denovo.01, whole genome shotgun sequence	692537..692974	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEJK010000028.1 Salmonella enterica strain PNUSAS355565 SAMN35716200-rid18374983.guided.16, whole genome shotgun sequence	43570..44007	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEJK010000022.1 Salmonella enterica strain PNUSAS355565 SAMN35716200-rid18374983.denovo.23, whole genome shotgun sequence	6838..7480	enterobacteriales	IncFII(S)	100	262 / 262	ABOEJK010000017.1 Salmonella enterica strain PNUSAS355565 SAMN35716200-rid18374983.denovo.18, whole genome shotgun sequence	3859..4120																																																avrA	ABOEJK010000002.1	140720..141589	99.54	870	0						
GCA_032889485.1_PDT001777734.1_genomic.fna	Salmonella_enterica	0.5224	158.149 KB	9	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEJN010000005.1 Salmonella enterica strain PNUSAS355557 SAMN35716215-rid18374943.denovo.05, whole genome shotgun sequence	15499..15936	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEJN010000046.1 Salmonella enterica strain PNUSAS355557 SAMN35716215-rid18374943.guided.35, whole genome shotgun sequence	14839..15276	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032889505.1_PDT001777737.1_genomic.fna	Salmonella_enterica	0.521	375.684 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEJP010000001.1 Salmonella enterica strain PNUSAS355553 SAMN35716202-rid18374963.denovo.01, whole genome shotgun sequence	692529..692966	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEJP010000029.1 Salmonella enterica strain PNUSAS355553 SAMN35716202-rid18374963.guided.24, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEJP010000019.1 Salmonella enterica strain PNUSAS355553 SAMN35716202-rid18374963.denovo.19, whole genome shotgun sequence	40533..41175	enterobacteriales	IncFII(S)	100	262 / 262	ABOEJP010000023.1 Salmonella enterica strain PNUSAS355553 SAMN35716202-rid18374963.denovo.25, whole genome shotgun sequence	3403..3664																																																avrA	ABOEJP010000002.1	506562..507431	99.54	870	0						
GCA_032889525.1_PDT001777732.1_genomic.fna	Salmonella_enterica	0.5204	304.215 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEJO010000002.1 Salmonella enterica strain PNUSAS355554 SAMN35716217-rid18373203.denovo.02, whole genome shotgun sequence	172591..173028	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEJO010000031.1 Salmonella enterica strain PNUSAS355554 SAMN35716217-rid18373203.guided.26, whole genome shotgun sequence	2800..3237	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEJO010000012.1	140203..141071	99.195	870	0						
GCA_032889545.1_PDT001777731.1_genomic.fna	Salmonella_enterica	0.5211	406.194 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEJQ010000001.1 Salmonella enterica strain PNUSAS355560 SAMN35716209-rid18374933.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEJQ010000026.1 Salmonella enterica strain PNUSAS355560 SAMN35716209-rid18374933.guided.19, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEJQ010000014.1 Salmonella enterica strain PNUSAS355560 SAMN35716209-rid18374933.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOEJQ010000014.1 Salmonella enterica strain PNUSAS355560 SAMN35716209-rid18374933.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABOEJQ010000002.1	553635..554504	99.54	870	0						
GCA_032889585.1_PDT001777727.1_genomic.fna	Salmonella_enterica	0.521	339.735 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	4	Col440I,IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEJS010000003.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.denovo.03, whole genome shotgun sequence	159387..159824	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEJS010000024.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.denovo.24, whole genome shotgun sequence	31733..32569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEJS010000024.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.denovo.24, whole genome shotgun sequence	30930..31733	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOEJS010000036.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.denovo.44, whole genome shotgun sequence	137..952	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	V00359	aph(6)-Id	100	837/837	ABOEJS010000048.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.guided.30, whole genome shotgun sequence	3231..4067	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEJS010000048.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.guided.30, whole genome shotgun sequence	2428..3231	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOEJS010000049.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.guided.33, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOEJS010000053.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.guided.43, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	V00359	blaCMY-2	100	1146/1146	ABOEJS010000024.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.denovo.24, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOEJS010000031.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.denovo.35, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEJS010000031.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.denovo.35, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEJS010000031.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.denovo.35, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOEJS010000046.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.guided.26, whole genome shotgun sequence	26789..27934	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOEJS010000052.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.guided.41, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOEJS010000052.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.guided.41, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOEJS010000052.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.guided.41, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABOEJS010000024.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.denovo.24, whole genome shotgun sequence	35705..36918	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEJS010000050.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.guided.36, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEJS010000024.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.denovo.24, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEJS010000048.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.guided.30, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEJS010000024.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.denovo.24, whole genome shotgun sequence	33830..35104	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEJS010000048.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.guided.30, whole genome shotgun sequence	5328..6602	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																														gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	Col440I	93.69	111 / 114	ABOEJS010000033.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.denovo.38, whole genome shotgun sequence	339..449	enterobacteriales	IncC	100	417 / 417	ABOEJS010000022.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.denovo.22, whole genome shotgun sequence	17493..17909		enterobacteriales	IncFII(S)	97.71	262 / 262	ABOEJS010000018.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.denovo.18, whole genome shotgun sequence	16900..17159		enterobacteriales	IncX1	98.66	374 / 374	ABOEJS010000018.1 Salmonella enterica strain PNUSAS355558 SAMN35716214-rid18374913.denovo.18, whole genome shotgun sequence	52753..53126																																		avrA	ABOEJS010000005.1	173549..174417	99.54	870	0						
GCA_032889605.1_PDT001777726.1_genomic.fna	Salmonella_enterica	0.5216	416.62 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEJT010000001.1 Salmonella enterica strain PNUSAS355315 SAMN35716055-rid18374903.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEJT010000034.1 Salmonella enterica strain PNUSAS355315 SAMN35716055-rid18374903.guided.22, whole genome shotgun sequence	9267..9704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOEJT010000024.1 Salmonella enterica strain PNUSAS355315 SAMN35716055-rid18374903.denovo.27, whole genome shotgun sequence	547..675	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOEJT010000017.1 Salmonella enterica strain PNUSAS355315 SAMN35716055-rid18374903.denovo.18, whole genome shotgun sequence	26211..26352																																																avrA	ABOEJT010000008.1	39358..40227	98.966	870	0						
GCA_032889625.1_PDT001777723.1_genomic.fna	Salmonella_enterica	0.5224	219.167 KB	9	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOEJU010000002.1 Salmonella enterica strain PNUSAS354266 SAMN35716120-rid18373173.denovo.02, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOEJU010000048.1 Salmonella enterica strain PNUSAS354266 SAMN35716120-rid18373173.guided.36, whole genome shotgun sequence	3402..3839	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOEJU010000034.1 Salmonella enterica strain PNUSAS354266 SAMN35716120-rid18373173.denovo.37, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOEJU010000049.1 Salmonella enterica strain PNUSAS354266 SAMN35716120-rid18373173.guided.38, whole genome shotgun sequence	946..1590	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOEJU010000034.1 Salmonella enterica strain PNUSAS354266 SAMN35716120-rid18373173.denovo.37, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOEJU010000049.1 Salmonella enterica strain PNUSAS354266 SAMN35716120-rid18373173.guided.38, whole genome shotgun sequence	290..420																																																avrA	ABOEJU010000008.1	43272..44141	99.77	870	0						
GCA_032889825.1_PDT001948671.1_genomic.fna	Salmonella_enterica	0.5216	548.274 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEJV010000001.1 Salmonella enterica strain PNUSAS393719 SAMN37898847-rid19914333.denovo.01, whole genome shotgun sequence	1349919..1350356	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEJV010000020.1 Salmonella enterica strain PNUSAS393719 SAMN37898847-rid19914333.guided.14, whole genome shotgun sequence	42522..42959	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEJV010000003.1	407262..408131	99.425	870	0						
GCA_032889845.1_PDT001948668.1_genomic.fna	Salmonella_enterica	0.5208	298.108 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEJX010000001.1 Salmonella enterica strain PNUSAS393767 SAMN37898856-rid19914303.denovo.01, whole genome shotgun sequence	407341..407778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEJX010000040.1 Salmonella enterica strain PNUSAS393767 SAMN37898856-rid19914303.guided.26, whole genome shotgun sequence	9025..9462	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEJX010000018.1	39570..40438	99.195	870	0						
GCA_032889865.1_PDT001948669.1_genomic.fna	Salmonella_enterica	0.5224	496.515 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col8282	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEJW010000001.1 Salmonella enterica strain PNUSAS393734 SAMN37898853-rid19914313.denovo.01, whole genome shotgun sequence	825697..826134	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEJW010000031.1 Salmonella enterica strain PNUSAS393734 SAMN37898853-rid19914313.guided.17, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col8282	100	207 / 207	ABOEJW010000023.1 Salmonella enterica strain PNUSAS393734 SAMN37898853-rid19914313.denovo.26, whole genome shotgun sequence	414..620																																																						avrA	ABOEJW010000002.1	129887..130756	98.966	870	0						
GCA_032889885.1_PDT001948667.1_genomic.fna	Salmonella_enterica	0.5198	179.852 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrB_p.S464Y	1	IncX1	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOEJY010000012.1 Salmonella enterica strain PNUSAS393728 SAMN37898894-rid19914293.denovo.12, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOEJY010000055.1 Salmonella enterica strain PNUSAS393728 SAMN37898894-rid19914293.guided.39, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrB p.S464Y	TCT -> TAC	S -> Y	Ciprofloxacin	27896141																enterobacteriales	IncX1	99.73	377 / 377	ABOEJY010000031.1 Salmonella enterica strain PNUSAS393728 SAMN37898894-rid19914293.denovo.32, whole genome shotgun sequence	965..1341																																																																	
GCA_032889905.1_PDT001948665.1_genomic.fna	Salmonella_enterica	0.5142	208.815 KB	8	aroC_56,dnaN_24,hemD_29,hisD_1839,purE_20,sucA_50,thrA_78	Unknown	47:g,z51:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_56	dnaN	100	100	dnaN_24	hemD	100	100	hemD_29	hisD	100	100	hisD_1839	purE	100	100	purE_20	sucA	100	100	sucA_50	thrA	100	100	thrA_78	47	g,z51	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 47:g,z51:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032889925.1_PDT001948666.1_genomic.fna	Salmonella_enterica	0.5213	394.076 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440II,IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOEJZ010000005.1 Salmonella enterica strain PNUSAS393722 SAMN37898914-rid19914283.denovo.05, whole genome shotgun sequence	255949..256386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOEJZ010000024.1 Salmonella enterica strain PNUSAS393722 SAMN37898914-rid19914283.guided.15, whole genome shotgun sequence	42384..42821	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	94.57	129 / 131	ABOEJZ010000019.1 Salmonella enterica strain PNUSAS393722 SAMN37898914-rid19914283.denovo.21, whole genome shotgun sequence	2985..3113	enterobacteriales	Col440II	98.23	282 / 282	ABOEJZ010000019.1 Salmonella enterica strain PNUSAS393722 SAMN37898914-rid19914283.denovo.21, whole genome shotgun sequence	2115..2396		enterobacteriales	IncFIB(pB171)	91.29	643 / 643	ABOEJZ010000011.1 Salmonella enterica strain PNUSAS393722 SAMN37898914-rid19914283.denovo.11, whole genome shotgun sequence	11395..12037																																									avrA	ABOEJZ010000001.1	544157..545025	99.31	870	0						
GCA_032889945.1_PDT001948662.1_genomic.fna	Salmonella_enterica	0.523	335.934 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEKB010000004.1 Salmonella enterica strain PNUSAS393788 SAMN37898911-rid19914243.denovo.04, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEKB010000043.1 Salmonella enterica strain PNUSAS393788 SAMN37898911-rid19914243.guided.28, whole genome shotgun sequence	4408..4845	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOEKB010000023.1 Salmonella enterica strain PNUSAS393788 SAMN37898911-rid19914243.denovo.23, whole genome shotgun sequence	17661..17802																																																						avrA	ABOEKB010000001.1	146997..147866	98.966	870	0						
GCA_032889965.1_PDT001948664.1_genomic.fna	Salmonella_enterica	0.5202	322.782 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEKC010000001.1 Salmonella enterica strain PNUSAS393729 SAMN37898912-rid19914263.denovo.01, whole genome shotgun sequence	598753..599190	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEKC010000046.1 Salmonella enterica strain PNUSAS393729 SAMN37898912-rid19914263.guided.29, whole genome shotgun sequence	3705..4142	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.07	643 / 643	ABOEKC010000016.1 Salmonella enterica strain PNUSAS393729 SAMN37898912-rid19914263.denovo.16, whole genome shotgun sequence	91412..92054																																																						avrA	ABOEKC010000011.1	93878..94747	99.425	870	0						
GCA_032889985.1_PDT001948660.1_genomic.fna	Salmonella_enterica	0.5128	268.653 KB	6	aroC_65,dnaN_78,hemD_29,hisD_82,purE_20,sucA_50,thrA_60	3194	48:z4,z23,z32:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_65	dnaN	100	100	dnaN_78	hemD	100	100	hemD_29	hisD	100	100	hisD_82	purE	100	100	purE_20	sucA	100	100	sucA_50	thrA	100	100	thrA_60	48	z4,z23,z32	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 48:z4,z23,z32:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032890005.1_PDT001948659.1_genomic.fna	Salmonella_enterica	0.5219	558.057 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOEKE010000001.1 Salmonella enterica strain PNUSAS393783 SAMN37898905-rid19914213.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOEKE010000026.1 Salmonella enterica strain PNUSAS393783 SAMN37898905-rid19914213.guided.17, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEKE010000003.1	138355..139224	98.966	870	0						
GCA_032890025.1_PDT001948658.1_genomic.fna	Salmonella_enterica	0.5214	301.027 KB	6	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOEKF010000001.1 Salmonella enterica strain PNUSAS393778 SAMN37898910-rid19914203.denovo.01, whole genome shotgun sequence	136918..137355	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOEKF010000046.1 Salmonella enterica strain PNUSAS393778 SAMN37898910-rid19914203.guided.28, whole genome shotgun sequence	24488..24925	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEKF010000011.1	101941..102810	99.655	870	0						
GCA_032890045.1_PDT001948656.1_genomic.fna	Salmonella_enterica	0.5214	478.617 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEKG010000001.1 Salmonella enterica strain PNUSAS393741 SAMN37898882-rid19914183.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEKG010000026.1 Salmonella enterica strain PNUSAS393741 SAMN37898882-rid19914183.guided.18, whole genome shotgun sequence	4832..5269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEKG010000014.1 Salmonella enterica strain PNUSAS393741 SAMN37898882-rid19914183.denovo.14, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOEKG010000014.1 Salmonella enterica strain PNUSAS393741 SAMN37898882-rid19914183.denovo.14, whole genome shotgun sequence	4416..4677																																																avrA	ABOEKG010000002.1	553329..554198	99.54	870	0						
GCA_032890065.1_PDT001948655.1_genomic.fna	Salmonella_enterica	0.5206	191.426 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEKI010000002.1 Salmonella enterica strain PNUSAS393807 SAMN37898879-rid19914173.denovo.02, whole genome shotgun sequence	145385..145822	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEKI010000055.1 Salmonella enterica strain PNUSAS393807 SAMN37898879-rid19914173.guided.26, whole genome shotgun sequence	5709..6146	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOEKI010000037.1 Salmonella enterica strain PNUSAS393807 SAMN37898879-rid19914173.denovo.40, whole genome shotgun sequence	3437..4079	enterobacteriales	IncFII(Yp)	93.07	231 / 230	ABOEKI010000034.1 Salmonella enterica strain PNUSAS393807 SAMN37898879-rid19914173.denovo.36, whole genome shotgun sequence	10979..11205																																																avrA	ABOEKI010000004.1	174489..175357	99.77	870	0						
GCA_032890085.1_PDT001948637.1_genomic.fna	Salmonella_enterica	0.52	193.991 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEKK010000001.1 Salmonella enterica strain PNUSAS393775 SAMN37898886-rid19913993.denovo.01, whole genome shotgun sequence	573266..573703	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOEKK010000030.1 Salmonella enterica strain PNUSAS393775 SAMN37898886-rid19913993.denovo.31, whole genome shotgun sequence	1346..2137	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOEKK010000030.1 Salmonella enterica strain PNUSAS393775 SAMN37898886-rid19913993.denovo.31, whole genome shotgun sequence	1346..2137	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOEKK010000056.1 Salmonella enterica strain PNUSAS393775 SAMN37898886-rid19913993.guided.24, whole genome shotgun sequence	21211..21648	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOEKK010000057.1 Salmonella enterica strain PNUSAS393775 SAMN37898886-rid19913993.guided.32, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOEKK010000057.1 Salmonella enterica strain PNUSAS393775 SAMN37898886-rid19913993.guided.32, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOEKK010000030.1 Salmonella enterica strain PNUSAS393775 SAMN37898886-rid19913993.denovo.31, whole genome shotgun sequence	2642..3481	Sulfamethoxazole	U12338	sul1	100	840/840	ABOEKK010000057.1 Salmonella enterica strain PNUSAS393775 SAMN37898886-rid19913993.guided.32, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOEKK010000030.1 Salmonella enterica strain PNUSAS393775 SAMN37898886-rid19913993.denovo.31, whole genome shotgun sequence	15998..17197	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOEKK010000057.1 Salmonella enterica strain PNUSAS393775 SAMN37898886-rid19913993.guided.32, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOEKK010000035.1 Salmonella enterica strain PNUSAS393775 SAMN37898886-rid19913993.denovo.37, whole genome shotgun sequence	9109..9668																																																						avrA	ABOEKK010000003.1	39430..40299	99.655	870	0						
GCA_032890105.1_PDT001948653.1_genomic.fna	Salmonella_enterica	0.5224	496.516 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEKH010000001.1 Salmonella enterica strain PNUSAS393801 SAMN37898878-rid19914153.denovo.01, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEKH010000028.1 Salmonella enterica strain PNUSAS393801 SAMN37898878-rid19914153.guided.18, whole genome shotgun sequence	4832..5269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEKH010000003.1	28833..29702	98.966	870	0						
GCA_032890125.1_PDT001948635.1_genomic.fna	Salmonella_enterica	0.5223	311.794 KB	6	aroC_543,dnaN_69,hemD_101,hisD_12,purE_370,sucA_130,thrA_347	2553	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_543	dnaN	100	100	dnaN_69	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_370	sucA	100	100	sucA_130	thrA	100	100	thrA_347	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOEKJ010000001.1 Salmonella enterica strain PNUSAS393744 SAMN37898889-rid19913973.denovo.01, whole genome shotgun sequence	539871..540308	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOEKJ010000027.1 Salmonella enterica strain PNUSAS393744 SAMN37898889-rid19913973.guided.19, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEKJ010000002.1	514148..515017	99.31	870	0						
GCA_032890145.1_PDT001948615.1_genomic.fna	Salmonella_enterica	0.51	267.007 KB	7	aroC_88,dnaN_26,hemD_30,hisD_55*,purE_21,sucA_87,thrA_80	233*	48:l,v:1,5,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	99.8003992015968	100	hisD_55*	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_80	48	l,v	1,5,7	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:l,v:1,5,(7)		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEKL010000001.1 Salmonella enterica strain PNUSAS393755 SAMN37898843-rid19913773.denovo.01, whole genome shotgun sequence	120509..120946	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOEKL010000060.1 Salmonella enterica strain PNUSAS393755 SAMN37898843-rid19913773.guided.33, whole genome shotgun sequence	15469..15906	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEKL010000008.1	178324..179193	96.552	870	0						
GCA_032890225.1_PDT001777719.1_genomic.fna	Salmonella_enterica	0.5209	257.544 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEKR010000002.1 Salmonella enterica strain PNUSAS355325 SAMN35716107-rid18374863.denovo.002, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEKR010000104.1 Salmonella enterica strain PNUSAS355325 SAMN35716107-rid18374863.guided.028, whole genome shotgun sequence	3347..3784	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	241 / 262	ABOEKR010000078.1 Salmonella enterica strain PNUSAS355325 SAMN35716107-rid18374863.denovo.081, whole genome shotgun sequence	1124..1364	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOEKR010000059.1 Salmonella enterica strain PNUSAS355325 SAMN35716107-rid18374863.denovo.061, whole genome shotgun sequence	1847..1988																																																avrA	ABOEKR010000003.1	209222..210090	100	869	0						
GCA_032890245.1_PDT001777721.1_genomic.fna	Salmonella_enterica	0.52	685.911 KB	3	aroC_13,dnaN_12,hemD_63,hisD_16,purE_13,sucA_16,thrA_4	437	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_63	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOEKP010000001.1 Salmonella enterica strain PNUSAS355327 SAMN35716111-rid18374873.denovo.01, whole genome shotgun sequence	502198..502635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOEKP010000020.1 Salmonella enterica strain PNUSAS355327 SAMN35716111-rid18374873.guided.15, whole genome shotgun sequence	8005..8442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEKP010000003.1	544664..545533	99.54	870	0						
GCA_032890265.1_PDT001777720.1_genomic.fna	Salmonella_enterica	0.5213	382.677 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Bron or Agbeni	The predicted serotypes share the same general formula: 13:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEKQ010000001.1 Salmonella enterica strain PNUSAS355236 SAMN35716153-rid18373163.denovo.01, whole genome shotgun sequence	623585..624022	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEKQ010000030.1 Salmonella enterica strain PNUSAS355236 SAMN35716153-rid18373163.guided.21, whole genome shotgun sequence	10611..11048	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEKQ010000006.1	144915..145784	99.31	870	0						
GCA_032890285.1_PDT001777718.1_genomic.fna	Salmonella_enterica	0.5214	489.039 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEKS010000001.1 Salmonella enterica strain PNUSAS355318 SAMN35716101-rid18371833.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEKS010000028.1 Salmonella enterica strain PNUSAS355318 SAMN35716101-rid18371833.guided.23, whole genome shotgun sequence	4008..4445	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEKS010000019.1 Salmonella enterica strain PNUSAS355318 SAMN35716101-rid18371833.denovo.20, whole genome shotgun sequence	6833..7475	enterobacteriales	IncFII(S)	100	262 / 262	ABOEKS010000020.1 Salmonella enterica strain PNUSAS355318 SAMN35716101-rid18371833.denovo.21, whole genome shotgun sequence	3394..3655																																																avrA	ABOEKS010000002.1	505461..506330	99.54	870	0						
GCA_032890305.1_PDT001777717.1_genomic.fna	Salmonella_enterica	0.5215	351.836 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOEKT010000002.1 Salmonella enterica strain PNUSAS355237 SAMN35716154-rid18374853.denovo.02, whole genome shotgun sequence	428882..429319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOEKT010000032.1 Salmonella enterica strain PNUSAS355237 SAMN35716154-rid18374853.guided.19, whole genome shotgun sequence	8844..9281	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEKT010000001.1	138357..139226	98.966	870	0						
GCA_032890325.1_PDT001777715.1_genomic.fna	Salmonella_enterica	0.521	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEKV010000001.1 Salmonella enterica strain PNUSAS355234 SAMN35716151-rid18373153.denovo.01, whole genome shotgun sequence	815076..815513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEKV010000025.1 Salmonella enterica strain PNUSAS355234 SAMN35716151-rid18373153.guided.14, whole genome shotgun sequence	23453..23890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	Col440I	94.74	114 / 114	ABOEKV010000020.1 Salmonella enterica strain PNUSAS355234 SAMN35716151-rid18373153.denovo.23, whole genome shotgun sequence	1981..2094	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEKV010000017.1 Salmonella enterica strain PNUSAS355234 SAMN35716151-rid18373153.denovo.19, whole genome shotgun sequence	6802..7444		enterobacteriales	IncFII(S)	100	262 / 262	ABOEKV010000018.1 Salmonella enterica strain PNUSAS355234 SAMN35716151-rid18373153.denovo.21, whole genome shotgun sequence	3412..3673																																									avrA	ABOEKV010000002.1	552883..553752	99.54	870	0						
GCA_032890345.1_PDT001777716.1_genomic.fna	Salmonella_enterica	0.5214	286.045 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEKU010000012.1 Salmonella enterica strain PNUSAS355251 SAMN35716127-rid18374843.denovo.12, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEKU010000047.1 Salmonella enterica strain PNUSAS355251 SAMN35716127-rid18374843.guided.31, whole genome shotgun sequence	4967..5404	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOEKU010000020.1 Salmonella enterica strain PNUSAS355251 SAMN35716127-rid18374843.denovo.20, whole genome shotgun sequence	34956..35489																																																						avrA	ABOEKU010000001.1	187683..188549	98.966	870	0						
GCA_032890365.1_PDT001777713.1_genomic.fna	Salmonella_enterica	0.5221	443.924 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEKX010000001.1 Salmonella enterica strain PNUSAS355313 SAMN35716056-rid18373143.denovo.01, whole genome shotgun sequence	790281..790718	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEKX010000022.1 Salmonella enterica strain PNUSAS355313 SAMN35716056-rid18373143.guided.14, whole genome shotgun sequence	26077..26514	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEKX010000002.1	183135..184004	98.966	870	0						
GCA_032890385.1_PDT001777712.1_genomic.fna	Salmonella_enterica	0.5219	439.803 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEKY010000001.1 Salmonella enterica strain PNUSAS355249 SAMN35716165-rid18374823.denovo.01, whole genome shotgun sequence	458316..458753	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOEKY010000032.1 Salmonella enterica strain PNUSAS355249 SAMN35716165-rid18374823.guided.15, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEKY010000002.1	553523..554392	99.655	870	0						
GCA_032890405.1_PDT001777710.1_genomic.fna	Salmonella_enterica	0.5218	207.445 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEKZ010000001.1 Salmonella enterica strain PNUSAS354254 SAMN35716116-rid18373133.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEKZ010000045.1 Salmonella enterica strain PNUSAS354254 SAMN35716116-rid18373133.guided.29, whole genome shotgun sequence	8022..8459	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEKZ010000005.1	94139..95007	99.77	870	0						
GCA_032890425.1_PDT001777711.1_genomic.fna	Salmonella_enterica	0.5211	489.733 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOELA010000001.1 Salmonella enterica strain PNUSAS355229 SAMN35716182-rid18374813.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOELA010000030.1 Salmonella enterica strain PNUSAS355229 SAMN35716182-rid18374813.guided.14, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOELA010000017.1 Salmonella enterica strain PNUSAS355229 SAMN35716182-rid18374813.denovo.20, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOELA010000021.1 Salmonella enterica strain PNUSAS355229 SAMN35716182-rid18374813.denovo.24, whole genome shotgun sequence	3385..3646																																																avrA	ABOELA010000002.1	553120..553989	99.54	870	0						
GCA_032890445.1_PDT001777714.1_genomic.fna	Salmonella_enterica	0.5213	180.543 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,qnrB19,qnrB19,sul1,tet(G),tet(A),tet(M),tet(A),tet(G),tet(M)	0		3	Col(pHAD28),Col440I,IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEKW010000001.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.denovo.01, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOEKW010000027.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.denovo.27, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABOEKW010000071.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.guided.54, whole genome shotgun sequence	2798..3235	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOEKW010000076.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.guided.68, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOEKW010000044.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.denovo.46, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOEKW010000075.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.guided.65, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABOEKW010000044.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.denovo.46, whole genome shotgun sequence	6603..7817	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABOEKW010000070.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.guided.53, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABOEKW010000052.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.denovo.57, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOEKW010000073.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.guided.60, whole genome shotgun sequence	513..1157	Ciprofloxacin	EU432277	sul1	100	840/840	ABOEKW010000074.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.guided.63, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABOEKW010000044.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.denovo.46, whole genome shotgun sequence	4491..5666	Doxycycline, Tetracycline	AF133140	tet(A)	99.92	1200/1200	ABOEKW010000048.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.denovo.51, whole genome shotgun sequence	2521..3720	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	ABOEKW010000053.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.denovo.59, whole genome shotgun sequence	90..2009	Doxycycline, Tetracycline, Minocycline	X04388	tet(A)	99.92	1200/1200	ABOEKW010000069.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.guided.50, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790	tet(G)	100	1176/1176	ABOEKW010000070.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.guided.53, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140	tet(M)	96.15	1920/1920	ABOEKW010000072.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.guided.58, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	Col(pHAD28)	100	131 / 131	ABOEKW010000052.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.denovo.57, whole genome shotgun sequence	1522..1652	enterobacteriales	Col440I	92.04	113 / 114	ABOEKW010000051.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.denovo.56, whole genome shotgun sequence	1334..1446		enterobacteriales	IncFII(S)	100	262 / 262	ABOEKW010000036.1 Salmonella enterica strain PNUSAS355314 SAMN35716113-rid18374833.denovo.36, whole genome shotgun sequence	7167..7428																																									avrA	ABOEKW010000004.1	174490..175359	99.885	870	0						
GCA_032890465.1_PDT001777708.1_genomic.fna	Salmonella_enterica	0.5206	200.375 KB	7	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOELB010000001.1 Salmonella enterica strain PNUSAS355250 SAMN35716126-rid18371823.denovo.01, whole genome shotgun sequence	462162..462599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOELB010000041.1 Salmonella enterica strain PNUSAS355250 SAMN35716126-rid18371823.guided.28, whole genome shotgun sequence	10936..11373	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOELB010000002.1	121965..122834	99.195	870	0						
GCA_032890485.1_PDT001777709.1_genomic.fna	Salmonella_enterica	0.5222	233.191 KB	7	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	10	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA3,aadA3,aadA2b,blaCARB-2,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOELC010000002.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.denovo.02, whole genome shotgun sequence	172170..172607	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOELC010000035.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.denovo.36, whole genome shotgun sequence	4165..4944	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOELC010000061.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.guided.34, whole genome shotgun sequence	15287..15724	Amikacin, Tobramycin	NC_003197	aadA3	100	730/792	ABOELC010000063.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.guided.41, whole genome shotgun sequence	4194..4923	Spectinomycin, Streptomycin	AF047479	aadA3	100	730/792	ABOELC010000064.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.guided.42, whole genome shotgun sequence	4194..4923	Spectinomycin, Streptomycin	AF047479	aadA2b	99.87	780/780	ABOELC010000069.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.guided.50, whole genome shotgun sequence	817..1596	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOELC010000035.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.denovo.36, whole genome shotgun sequence	3169..4035	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	99.88	867/867	ABOELC010000063.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.guided.41, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOELC010000064.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.guided.42, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOELC010000035.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.denovo.36, whole genome shotgun sequence	11599..12504	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOELC010000065.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.guided.43, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOELC010000037.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.denovo.38, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOELC010000067.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.guided.46, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOELC010000035.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.denovo.36, whole genome shotgun sequence	2253..2909	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOELC010000063.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.guided.41, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOELC010000064.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.guided.42, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOELC010000035.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.denovo.36, whole genome shotgun sequence	5449..6288	Sulfamethoxazole	U12338	sul1	100	840/840	ABOELC010000070.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.guided.52, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOELC010000037.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.denovo.38, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOELC010000068.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.guided.47, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOELC010000037.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.denovo.38, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOELC010000068.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.guided.47, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOELC010000032.1 Salmonella enterica strain PNUSAS354273 SAMN35716144-rid18374803.denovo.32, whole genome shotgun sequence	5236..5486																																																						avrA	ABOELC010000001.1	174288..175157	99.77	870	0						
GCA_032890505.1_PDT001777707.1_genomic.fna	Salmonella_enterica	0.5215	411.231 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOELD010000001.1 Salmonella enterica strain PNUSAS355239 SAMN35716156-rid18373123.denovo.01, whole genome shotgun sequence	172127..172564	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOELD010000029.1 Salmonella enterica strain PNUSAS355239 SAMN35716156-rid18373123.guided.19, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOELD010000002.1	553351..554220	99.77	870	0						
GCA_032890525.1_PDT001777706.1_genomic.fna	Salmonella_enterica	0.5201	238.812 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOELE010000001.1 Salmonella enterica strain PNUSAS355254 SAMN35716169-rid18374793.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOELE010000034.1 Salmonella enterica strain PNUSAS355254 SAMN35716169-rid18374793.denovo.38, whole genome shotgun sequence	555..1370	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	EU722351	aph(6)-Id	100	837/837	ABOELE010000035.1 Salmonella enterica strain PNUSAS355254 SAMN35716169-rid18374793.denovo.40, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOELE010000035.1 Salmonella enterica strain PNUSAS355254 SAMN35716169-rid18374793.denovo.40, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOELE010000054.1 Salmonella enterica strain PNUSAS355254 SAMN35716169-rid18374793.guided.22, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOELE010000058.1 Salmonella enterica strain PNUSAS355254 SAMN35716169-rid18374793.guided.39, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOELE010000058.1 Salmonella enterica strain PNUSAS355254 SAMN35716169-rid18374793.guided.39, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOELE010000059.1 Salmonella enterica strain PNUSAS355254 SAMN35716169-rid18374793.guided.42, whole genome shotgun sequence	149..964	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	EU722351	blaTEM-1B	100	861/861	ABOELE010000040.1 Salmonella enterica strain PNUSAS355254 SAMN35716169-rid18374793.denovo.47, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOELE010000060.1 Salmonella enterica strain PNUSAS355254 SAMN35716169-rid18374793.guided.46, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOELE010000035.1 Salmonella enterica strain PNUSAS355254 SAMN35716169-rid18374793.denovo.40, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOELE010000058.1 Salmonella enterica strain PNUSAS355254 SAMN35716169-rid18374793.guided.39, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOELE010000030.1 Salmonella enterica strain PNUSAS355254 SAMN35716169-rid18374793.denovo.32, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOELE010000057.1 Salmonella enterica strain PNUSAS355254 SAMN35716169-rid18374793.guided.34, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncX1	98.66	374 / 374	ABOELE010000027.1 Salmonella enterica strain PNUSAS355254 SAMN35716169-rid18374793.denovo.28, whole genome shotgun sequence	6956..7329																																																						avrA	ABOELE010000002.1	542147..543016	99.885	870	0						
GCA_032890545.1_PDT001777703.1_genomic.fna	Salmonella_enterica	0.5212	257.759 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOELG010000003.1 Salmonella enterica strain PNUSAS354269 SAMN35716138-rid18371813.denovo.03, whole genome shotgun sequence	159027..159464	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOELG010000033.1 Salmonella enterica strain PNUSAS354269 SAMN35716138-rid18371813.guided.32, whole genome shotgun sequence	175..612	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOELG010000019.1 Salmonella enterica strain PNUSAS354269 SAMN35716138-rid18371813.denovo.19, whole genome shotgun sequence	6774..7416	enterobacteriales	IncFII(S)	100	262 / 262	ABOELG010000019.1 Salmonella enterica strain PNUSAS354269 SAMN35716138-rid18371813.denovo.19, whole genome shotgun sequence	12866..13127																																																avrA	ABOELG010000001.1	506092..506961	99.54	870	0						
GCA_032890565.1_PDT001777701.1_genomic.fna	Salmonella_enterica	0.522	236.095 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOELH010000003.1 Salmonella enterica strain PNUSAS354259 SAMN35716134-rid18374763.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOELH010000039.1 Salmonella enterica strain PNUSAS354259 SAMN35716134-rid18374763.guided.30, whole genome shotgun sequence	20617..21054	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOELH010000023.1 Salmonella enterica strain PNUSAS354259 SAMN35716134-rid18374763.denovo.23, whole genome shotgun sequence	44724..45366	enterobacteriales	IncFII(S)	100	262 / 262	ABOELH010000023.1 Salmonella enterica strain PNUSAS354259 SAMN35716134-rid18374763.denovo.23, whole genome shotgun sequence	29378..29639																																																avrA	ABOELH010000001.1	446720..447588	100	869	0						
GCA_032890585.1_PDT001777705.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOELF010000001.1 Salmonella enterica strain PNUSAS355243 SAMN35716160-rid18373113.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOELF010000024.1 Salmonella enterica strain PNUSAS355243 SAMN35716160-rid18373113.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOELF010000016.1 Salmonella enterica strain PNUSAS355243 SAMN35716160-rid18373113.denovo.19, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABOELF010000018.1 Salmonella enterica strain PNUSAS355243 SAMN35716160-rid18373113.denovo.21, whole genome shotgun sequence	3392..3653																																																avrA	ABOELF010000002.1	553635..554504	99.54	870	0						
GCA_032890605.1_PDT001777700.1_genomic.fna	Salmonella_enterica	0.521	477.336 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOELJ010000001.1 Salmonella enterica strain PNUSAS355242 SAMN35716159-rid18373103.denovo.01, whole genome shotgun sequence	787942..788379	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOELJ010000027.1 Salmonella enterica strain PNUSAS355242 SAMN35716159-rid18373103.guided.18, whole genome shotgun sequence	27387..27824	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOELJ010000014.1 Salmonella enterica strain PNUSAS355242 SAMN35716159-rid18373103.denovo.14, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOELJ010000014.1 Salmonella enterica strain PNUSAS355242 SAMN35716159-rid18373103.denovo.14, whole genome shotgun sequence	12923..13184																																																avrA	ABOELJ010000002.1	553198..554067	99.54	870	0						
GCA_032890625.1_PDT001777702.1_genomic.fna	Salmonella_enterica	0.5204	289.529 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOELI010000001.1 Salmonella enterica strain PNUSAS355241 SAMN35716157-rid18374773.denovo.01, whole genome shotgun sequence	793990..794427	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOELI010000033.1 Salmonella enterica strain PNUSAS355241 SAMN35716157-rid18374773.guided.23, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOELI010000019.1 Salmonella enterica strain PNUSAS355241 SAMN35716157-rid18374773.denovo.20, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOELI010000019.1 Salmonella enterica strain PNUSAS355241 SAMN35716157-rid18374773.denovo.20, whole genome shotgun sequence	12910..13171		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOELI010000016.1 Salmonella enterica strain PNUSAS355241 SAMN35716157-rid18374773.denovo.16, whole genome shotgun sequence	35289..35430																																									avrA	ABOELI010000003.1	141082..141951	99.54	870	0						
GCA_032890645.1_PDT001777698.1_genomic.fna	Salmonella_enterica	0.5207	278.668 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOELL010000001.1 Salmonella enterica strain PNUSAS355321 SAMN35716103-rid18371803.denovo.01, whole genome shotgun sequence	458979..459416	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOELL010000036.1 Salmonella enterica strain PNUSAS355321 SAMN35716103-rid18371803.denovo.41, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOELL010000036.1 Salmonella enterica strain PNUSAS355321 SAMN35716103-rid18371803.denovo.41, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOELL010000054.1 Salmonella enterica strain PNUSAS355321 SAMN35716103-rid18371803.guided.31, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOELL010000057.1 Salmonella enterica strain PNUSAS355321 SAMN35716103-rid18371803.guided.40, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOELL010000057.1 Salmonella enterica strain PNUSAS355321 SAMN35716103-rid18371803.guided.40, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOELL010000040.1 Salmonella enterica strain PNUSAS355321 SAMN35716103-rid18371803.denovo.46, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOELL010000058.1 Salmonella enterica strain PNUSAS355321 SAMN35716103-rid18371803.guided.45, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOELL010000036.1 Salmonella enterica strain PNUSAS355321 SAMN35716103-rid18371803.denovo.41, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOELL010000057.1 Salmonella enterica strain PNUSAS355321 SAMN35716103-rid18371803.guided.40, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOELL010000031.1 Salmonella enterica strain PNUSAS355321 SAMN35716103-rid18371803.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOELL010000056.1 Salmonella enterica strain PNUSAS355321 SAMN35716103-rid18371803.guided.35, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABOELL010000002.1	540448..541317	99.885	870	0						
GCA_032890665.1_PDT001777699.1_genomic.fna	Salmonella_enterica	0.5222	267.978 KB	8	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOELK010000021.1 Salmonella enterica strain PNUSAS354270 SAMN35716141-rid18374753.denovo.21, whole genome shotgun sequence	20556..20993	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOELK010000043.1 Salmonella enterica strain PNUSAS354270 SAMN35716141-rid18374753.guided.29, whole genome shotgun sequence	10977..11414	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOELK010000029.1 Salmonella enterica strain PNUSAS354270 SAMN35716141-rid18374753.denovo.33, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOELK010000044.1 Salmonella enterica strain PNUSAS354270 SAMN35716141-rid18374753.guided.32, whole genome shotgun sequence	946..1590	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOELK010000029.1 Salmonella enterica strain PNUSAS354270 SAMN35716141-rid18374753.denovo.33, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOELK010000044.1 Salmonella enterica strain PNUSAS354270 SAMN35716141-rid18374753.guided.32, whole genome shotgun sequence	290..420																																																avrA	ABOELK010000006.1	43272..44141	99.77	870	0						
GCA_032890685.1_PDT001777697.1_genomic.fna	Salmonella_enterica	0.5211	490.179 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOELM010000001.1 Salmonella enterica strain PNUSAS354260 SAMN35716125-rid18373093.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOELM010000026.1 Salmonella enterica strain PNUSAS354260 SAMN35716125-rid18373093.guided.18, whole genome shotgun sequence	5729..6166	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOELM010000017.1 Salmonella enterica strain PNUSAS354260 SAMN35716125-rid18373093.denovo.20, whole genome shotgun sequence	6822..7464	enterobacteriales	IncFII(S)	100	262 / 262	ABOELM010000006.1 Salmonella enterica strain PNUSAS354260 SAMN35716125-rid18373093.denovo.06, whole genome shotgun sequence	3381..3642																																																avrA	ABOELM010000002.1	585481..586350	99.54	870	0						
GCA_032890705.1_PDT001777696.1_genomic.fna	Salmonella_enterica	0.5222	717.065 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOELN010000002.1 Salmonella enterica strain PNUSAS355256 SAMN35716171-rid18374743.denovo.02, whole genome shotgun sequence	407873..408310	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOELN010000024.1 Salmonella enterica strain PNUSAS355256 SAMN35716171-rid18374743.guided.16, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOELN010000004.1	561932..562802	99.656	871	0						
GCA_032890725.1_PDT001777695.1_genomic.fna	Salmonella_enterica	0.5217	146.226 KB	11	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOELP010000005.1 Salmonella enterica strain PNUSAS355231 SAMN35716148-rid18373083.denovo.005, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABOELP010000102.1 Salmonella enterica strain PNUSAS355231 SAMN35716148-rid18373083.guided.052, whole genome shotgun sequence	8005..8442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOELP010000004.1	93997..94866	98.851	870	0						
GCA_032890765.1_PDT001777693.1_genomic.fna	Salmonella_enterica	0.5207	406.282 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOELO010000001.1 Salmonella enterica strain PNUSAS355319 SAMN35716104-rid18371793.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOELO010000021.1 Salmonella enterica strain PNUSAS355319 SAMN35716104-rid18371793.guided.15, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032890785.1_PDT001777692.1_genomic.fna	Salmonella_enterica	0.5207	406.116 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOELR010000001.1 Salmonella enterica strain PNUSAS354255 SAMN35716135-rid18374723.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOELR010000028.1 Salmonella enterica strain PNUSAS354255 SAMN35716135-rid18374723.guided.18, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOELR010000021.1 Salmonella enterica strain PNUSAS354255 SAMN35716135-rid18374723.denovo.24, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOELR010000022.1 Salmonella enterica strain PNUSAS354255 SAMN35716135-rid18374723.denovo.25, whole genome shotgun sequence	3392..3653																																																avrA	ABOELR010000002.1	585481..586350	99.54	870	0						
GCA_032890805.1_PDT001777691.1_genomic.fna	Salmonella_enterica	0.5218	130.174 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_112,sucA_9,thrA_2	313	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_112	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOELS010000002.1 Salmonella enterica strain PNUSAS355564 SAMN35716211-rid18371783.denovo.02, whole genome shotgun sequence	207202..207639	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOELS010000063.1 Salmonella enterica strain PNUSAS355564 SAMN35716211-rid18371783.guided.52, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOELS010000030.1 Salmonella enterica strain PNUSAS355564 SAMN35716211-rid18371783.denovo.30, whole genome shotgun sequence	44765..45407	enterobacteriales	IncFII(S)	100	262 / 262	ABOELS010000030.1 Salmonella enterica strain PNUSAS355564 SAMN35716211-rid18371783.denovo.30, whole genome shotgun sequence	29419..29680																																																avrA	ABOELS010000001.1	106550..107419	99.885	870	0						
GCA_032890825.1_PDT001777690.1_genomic.fna	Salmonella_enterica	0.5211	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOELT010000001.1 Salmonella enterica strain PNUSAS355233 SAMN35716150-rid18373073.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOELT010000025.1 Salmonella enterica strain PNUSAS355233 SAMN35716150-rid18373073.guided.14, whole genome shotgun sequence	27784..28221	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOELT010000017.1 Salmonella enterica strain PNUSAS355233 SAMN35716150-rid18373073.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOELT010000018.1 Salmonella enterica strain PNUSAS355233 SAMN35716150-rid18373073.denovo.21, whole genome shotgun sequence	3425..3686																																																avrA	ABOELT010000002.1	553635..554504	99.54	870	0						
GCA_032890845.1_PDT001777687.1_genomic.fna	Salmonella_enterica	0.5207	375.934 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOELV010000001.1 Salmonella enterica strain PNUSAS355246 SAMN35716162-rid18373063.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOELV010000032.1 Salmonella enterica strain PNUSAS355246 SAMN35716162-rid18373063.guided.24, whole genome shotgun sequence	9842..10279	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOELV010000021.1 Salmonella enterica strain PNUSAS355246 SAMN35716162-rid18373063.denovo.23, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOELV010000022.1 Salmonella enterica strain PNUSAS355246 SAMN35716162-rid18373063.denovo.25, whole genome shotgun sequence	3386..3647		enterobacteriales	IncX1	98.93	374 / 374	ABOELV010000016.1 Salmonella enterica strain PNUSAS355246 SAMN35716162-rid18373063.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABOELV010000002.1	553684..554553	99.54	870	0						
GCA_032890865.1_PDT001777689.1_genomic.fna	Salmonella_enterica	0.5216	225.555 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOELU010000001.1 Salmonella enterica strain PNUSAS354265 SAMN35716122-rid18374713.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOELU010000052.1 Salmonella enterica strain PNUSAS354265 SAMN35716122-rid18374713.guided.39, whole genome shotgun sequence	2349..2786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOELU010000031.1 Salmonella enterica strain PNUSAS354265 SAMN35716122-rid18374713.denovo.32, whole genome shotgun sequence	24612..25254	enterobacteriales	IncFII(S)	100	262 / 262	ABOELU010000031.1 Salmonella enterica strain PNUSAS354265 SAMN35716122-rid18374713.denovo.32, whole genome shotgun sequence	9266..9527																																																avrA	ABOELU010000009.1	143595..144463	100	869	0						
GCA_032890885.1_PDT001777686.1_genomic.fna	Salmonella_enterica	0.522	257.84 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOELX010000002.1 Salmonella enterica strain PNUSAS355253 SAMN35716168-rid18371763.denovo.02, whole genome shotgun sequence	207562..207999	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOELX010000055.1 Salmonella enterica strain PNUSAS355253 SAMN35716168-rid18371763.guided.34, whole genome shotgun sequence	3152..3589	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOELX010000024.1 Salmonella enterica strain PNUSAS355253 SAMN35716168-rid18371763.denovo.24, whole genome shotgun sequence	44718..45360	enterobacteriales	IncFII(S)	100	262 / 262	ABOELX010000024.1 Salmonella enterica strain PNUSAS355253 SAMN35716168-rid18371763.denovo.24, whole genome shotgun sequence	29371..29632																																																avrA	ABOELX010000001.1	450792..451661	99.885	870	0						
GCA_032890905.1_PDT001777684.1_genomic.fna	Salmonella_enterica	0.5211	153.959 KB	10	aroC_110,dnaN_31*,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2711*	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_110	dnaN	99.8003992015968	100	dnaN_31*	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOELW010000013.1 Salmonella enterica strain PNUSAS355247 SAMN35716163-rid18374703.denovo.13, whole genome shotgun sequence	42644..43081	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOELW010000069.1 Salmonella enterica strain PNUSAS355247 SAMN35716163-rid18374703.guided.47, whole genome shotgun sequence	9842..10279	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOELW010000029.1 Salmonella enterica strain PNUSAS355247 SAMN35716163-rid18374703.denovo.29, whole genome shotgun sequence	36200..36842	enterobacteriales	IncFII(pMET)	97.4	577 / 577	ABOELW010000049.1 Salmonella enterica strain PNUSAS355247 SAMN35716163-rid18374703.denovo.51, whole genome shotgun sequence	7497..8073																																																											
GCA_032890925.1_PDT001777683.1_genomic.fna	Salmonella_enterica	0.5209	430.048 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOELY010000001.1 Salmonella enterica strain PNUSAS355225 SAMN35716173-rid18371753.denovo.01, whole genome shotgun sequence	628616..629053	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOELY010000029.1 Salmonella enterica strain PNUSAS355225 SAMN35716173-rid18371753.guided.16, whole genome shotgun sequence	40100..40537	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOELY010000015.1 Salmonella enterica strain PNUSAS355225 SAMN35716173-rid18371753.denovo.15, whole genome shotgun sequence	2465..2998																																																						avrA	ABOELY010000009.1	192358..193228	99.196	871	0						
GCA_032890945.1_PDT001777680.1_genomic.fna	Salmonella_enterica	0.5202	516.944 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOEMA010000001.1 Salmonella enterica strain PNUSAS355328 SAMN35716110-rid18373043.denovo.01, whole genome shotgun sequence	216757..217194	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOEMA010000033.1 Salmonella enterica strain PNUSAS355328 SAMN35716110-rid18373043.guided.23, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABOEMA010000017.1 Salmonella enterica strain PNUSAS355328 SAMN35716110-rid18373043.denovo.18, whole genome shotgun sequence	8484..8745																																																																	
GCA_032890965.1_PDT001777679.1_genomic.fna	Salmonella_enterica	0.5212	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOELZ010000001.1 Salmonella enterica strain PNUSAS355322 SAMN35716109-rid18374683.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOELZ010000025.1 Salmonella enterica strain PNUSAS355322 SAMN35716109-rid18374683.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOELZ010000017.1 Salmonella enterica strain PNUSAS355322 SAMN35716109-rid18374683.denovo.19, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOELZ010000019.1 Salmonella enterica strain PNUSAS355322 SAMN35716109-rid18374683.denovo.22, whole genome shotgun sequence	3393..3654																																																avrA	ABOELZ010000002.1	553635..554504	99.54	870	0						
GCA_032890985.1_PDT001777678.1_genomic.fna	Salmonella_enterica	0.5195	203.036 KB	9	aroC_150,dnaN_123,hemD_78,hisD_106,purE_140,sucA_285,thrA_84	2524	45:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_150	dnaN	100	100	dnaN_123	hemD	100	100	hemD_78	hisD	100	100	hisD_106	purE	100	100	purE_140	sucA	100	100	sucA_285	thrA	100	100	thrA_84	45	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 45:b:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOEMB010000006.1 Salmonella enterica strain PNUSAS355255 SAMN35716170-rid18371733.denovo.06, whole genome shotgun sequence	80998..81435	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOEMB010000053.1 Salmonella enterica strain PNUSAS355255 SAMN35716170-rid18371733.guided.37, whole genome shotgun sequence	6025..6462	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032891005.1_PDT001777676.1_genomic.fna	Salmonella_enterica	0.5209	466.292 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEMD010000001.1 Salmonella enterica strain PNUSAS355371 SAMN35715460-rid18371723.denovo.01, whole genome shotgun sequence	562114..562551	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEMD010000027.1 Salmonella enterica strain PNUSAS355371 SAMN35715460-rid18371723.guided.20, whole genome shotgun sequence	6239..6676	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEMD010000010.1	157401..158269	99.195	870	0						
GCA_032891025.1_PDT001777677.1_genomic.fna	Salmonella_enterica	0.5204	284.087 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEMC010000001.1 Salmonella enterica strain PNUSAS354264 SAMN35716121-rid18373033.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEMC010000031.1 Salmonella enterica strain PNUSAS354264 SAMN35716121-rid18373033.guided.25, whole genome shotgun sequence	2238..2675	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEMC010000023.1 Salmonella enterica strain PNUSAS354264 SAMN35716121-rid18373033.denovo.24, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOEMC010000024.1 Salmonella enterica strain PNUSAS354264 SAMN35716121-rid18373033.denovo.26, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.93	374 / 374	ABOEMC010000019.1 Salmonella enterica strain PNUSAS354264 SAMN35716121-rid18373033.denovo.20, whole genome shotgun sequence	32011..32384																																									avrA	ABOEMC010000006.1	175109..175978	99.54	870	0						
GCA_032891065.1_PDT001777674.1_genomic.fna	Salmonella_enterica	0.5206	469.739 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEME010000001.1 Salmonella enterica strain PNUSAS355396 SAMN35715447-rid18374673.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEME010000029.1 Salmonella enterica strain PNUSAS355396 SAMN35715447-rid18374673.guided.22, whole genome shotgun sequence	6728..7165	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEME010000016.1 Salmonella enterica strain PNUSAS355396 SAMN35715447-rid18374673.denovo.16, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOEME010000016.1 Salmonella enterica strain PNUSAS355396 SAMN35715447-rid18374673.denovo.16, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABOEME010000017.1 Salmonella enterica strain PNUSAS355396 SAMN35715447-rid18374673.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABOEME010000012.1	39422..40291	99.54	870	0						
GCA_032891085.1_PDT001777673.1_genomic.fna	Salmonella_enterica	0.5222	198.444 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEMF010000001.1 Salmonella enterica strain PNUSAS355331 SAMN35716106-rid18371713.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEMF010000040.1 Salmonella enterica strain PNUSAS355331 SAMN35716106-rid18371713.guided.33, whole genome shotgun sequence	2582..3019	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEMF010000002.1	207907..208775	99.77	870	0						
GCA_032891105.1_PDT001777672.1_genomic.fna	Salmonella_enterica	0.5223	288.807 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEMH010000001.1 Salmonella enterica strain PNUSAS354262 SAMN35716128-rid18374663.denovo.01, whole genome shotgun sequence	68380..68817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEMH010000035.1 Salmonella enterica strain PNUSAS354262 SAMN35716128-rid18374663.guided.25, whole genome shotgun sequence	4921..5358	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOEMH010000022.1 Salmonella enterica strain PNUSAS354262 SAMN35716128-rid18374663.denovo.22, whole genome shotgun sequence	44727..45369	enterobacteriales	IncFII(S)	100	262 / 262	ABOEMH010000022.1 Salmonella enterica strain PNUSAS354262 SAMN35716128-rid18374663.denovo.22, whole genome shotgun sequence	29381..29642																																																avrA	ABOEMH010000005.1	175008..175876	100	869	0						
GCA_032891125.1_PDT001777671.1_genomic.fna	Salmonella_enterica	0.5212	406.326 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEMI010000001.1 Salmonella enterica strain PNUSAS354248 SAMN35716114-rid18371703.denovo.01, whole genome shotgun sequence	53522..53959	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEMI010000027.1 Salmonella enterica strain PNUSAS354248 SAMN35716114-rid18371703.guided.16, whole genome shotgun sequence	4783..5220	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEMI010000020.1 Salmonella enterica strain PNUSAS354248 SAMN35716114-rid18371703.denovo.22, whole genome shotgun sequence	6804..7446	enterobacteriales	IncFII(S)	100	262 / 262	ABOEMI010000021.1 Salmonella enterica strain PNUSAS354248 SAMN35716114-rid18371703.denovo.24, whole genome shotgun sequence	3392..3653																																																avrA	ABOEMI010000002.1	553636..554505	99.54	870	0						
GCA_032891165.1_PDT001777668.1_genomic.fna	Salmonella_enterica	0.5224	224.837 KB	7	aroC_22,dnaN_10,hemD_25,hisD_21,purE_10,sucA_35,thrA_4	715	9:l,v:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	9	l,v	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Zaiman		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOEML010000013.1 Salmonella enterica strain PNUSAS354275 SAMN35716123-rid18373003.denovo.13, whole genome shotgun sequence	70788..71225	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOEML010000044.1 Salmonella enterica strain PNUSAS354275 SAMN35716123-rid18373003.guided.33, whole genome shotgun sequence	612..1049	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEML010000005.1	165676..166545	98.966	870	0						
GCA_032891205.1_PDT001777667.1_genomic.fna	Salmonella_enterica	0.5226	337.574 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEMM010000001.1 Salmonella enterica strain PNUSAS355406 SAMN35715485-rid18372993.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOEMM010000035.1 Salmonella enterica strain PNUSAS355406 SAMN35715485-rid18372993.guided.22, whole genome shotgun sequence	32021..32458	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEMM010000002.1	93814..94683	99.655	870	0						
GCA_032891225.1_PDT001777666.1_genomic.fna	Salmonella_enterica	0.52	386.287 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEMN010000001.1 Salmonella enterica strain PNUSAS355358 SAMN35715465-rid18372983.denovo.01, whole genome shotgun sequence	391061..391498	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEMN010000052.1 Salmonella enterica strain PNUSAS355358 SAMN35715465-rid18372983.guided.36, whole genome shotgun sequence	2703..3140	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	92.34	261 / 262	ABOEMN010000015.1 Salmonella enterica strain PNUSAS355358 SAMN35715465-rid18372983.denovo.15, whole genome shotgun sequence	39064..39319																																																																	
GCA_032891265.1_PDT001777663.1_genomic.fna	Salmonella_enterica	0.5212	476.054 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEMO010000001.1 Salmonella enterica strain PNUSAS354935 SAMN35715473-rid18371693.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEMO010000030.1 Salmonella enterica strain PNUSAS354935 SAMN35715473-rid18371693.guided.18, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEMO010000002.1	145182..146051	99.31	870	0						
GCA_032891285.1_PDT001777661.1_genomic.fna	Salmonella_enterica	0.5216	201.387 KB	9	aroC_43,dnaN_41,hemD_16,hisD_13,purE_41,sucA_13,thrA_4	2328	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_41	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEMR010000005.1 Salmonella enterica strain PNUSAS354272 SAMN35716143-rid18371683.denovo.05, whole genome shotgun sequence	80769..81206	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEMR010000041.1 Salmonella enterica strain PNUSAS354272 SAMN35716143-rid18371683.guided.37, whole genome shotgun sequence	9875..10312	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032891325.1_PDT001777660.1_genomic.fna	Salmonella_enterica	0.5206	477.685 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	ColpVC,IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEMS010000001.1 Salmonella enterica strain PNUSAS355316 SAMN35716057-rid18372963.denovo.01, whole genome shotgun sequence	774378..774815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEMS010000038.1 Salmonella enterica strain PNUSAS355316 SAMN35716057-rid18372963.guided.18, whole genome shotgun sequence	8643..9080	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	98.96	193 / 193	ABOEMS010000029.1 Salmonella enterica strain PNUSAS355316 SAMN35716057-rid18372963.denovo.32, whole genome shotgun sequence	805..997	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEMS010000017.1 Salmonella enterica strain PNUSAS355316 SAMN35716057-rid18372963.denovo.19, whole genome shotgun sequence	6794..7436		enterobacteriales	IncFII(S)	100	262 / 262	ABOEMS010000026.1 Salmonella enterica strain PNUSAS355316 SAMN35716057-rid18372963.denovo.29, whole genome shotgun sequence	220..481		enterobacteriales	IncX1	98.93	374 / 374	ABOEMS010000014.1 Salmonella enterica strain PNUSAS355316 SAMN35716057-rid18372963.denovo.14, whole genome shotgun sequence	32011..32384																																		avrA	ABOEMS010000002.1	553682..554551	99.54	870	0						
GCA_032891385.1_PDT001777655.1_genomic.fna	Salmonella_enterica	0.5224	723.69 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	Col440I,IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEMY010000001.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.denovo.01, whole genome shotgun sequence	172228..172665	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOEMY010000020.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.denovo.22, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABOEMY010000030.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.guided.21, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	358/438	ABOEMY010000033.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.guided.28, whole genome shotgun sequence	1..358	Amikacin, Tobramycin	NC_003197	blaCARB-2	100	867/867	ABOEMY010000020.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.denovo.22, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOEMY010000030.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.guided.21, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOEMY010000016.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.denovo.16, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOEMY010000029.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.guided.19, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOEMY010000016.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.denovo.16, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEMY010000031.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.guided.25, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOEMY010000020.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.denovo.22, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOEMY010000030.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.guided.21, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOEMY010000016.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.denovo.16, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABOEMY010000036.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.guided.31, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOEMY010000016.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.denovo.16, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEMY010000032.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.guided.26, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOEMY010000016.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.denovo.16, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABOEMY010000032.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.guided.26, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABOEMY010000021.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.denovo.23, whole genome shotgun sequence	3175..3285	enterobacteriales	IncR	100	251 / 251	ABOEMY010000015.1 Salmonella enterica strain PNUSAS355364 SAMN35715454-rid18372933.denovo.15, whole genome shotgun sequence	4434..4684																																																avrA	ABOEMY010000003.1	586519..587388	99.77	870	0						
GCA_032891405.1_PDT001777656.1_genomic.fna	Salmonella_enterica	0.5205	253.891 KB	7	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEMV010000004.1 Salmonella enterica strain PNUSAS354267 SAMN35716137-rid18372943.denovo.04, whole genome shotgun sequence	313234..313671	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEMV010000042.1 Salmonella enterica strain PNUSAS354267 SAMN35716137-rid18372943.guided.28, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABOEMV010000020.1 Salmonella enterica strain PNUSAS354267 SAMN35716137-rid18372943.denovo.20, whole genome shotgun sequence	51565..52207																																																																	
GCA_032891465.1_PDT001777651.1_genomic.fna	Salmonella_enterica	0.5219	162.376 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOENA010000002.1 Salmonella enterica strain PNUSAS354249 SAMN35716124-rid18371673.denovo.02, whole genome shotgun sequence	24934..25371	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOENA010000055.1 Salmonella enterica strain PNUSAS354249 SAMN35716124-rid18371673.guided.43, whole genome shotgun sequence	2502..2939	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOENA010000005.1	208058..208926	99.77	870	0						
GCA_032891485.1_PDT001777652.1_genomic.fna	Salmonella_enterica	0.5221	723.691 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEMZ010000001.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.denovo.01, whole genome shotgun sequence	462724..463161	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOEMZ010000022.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.denovo.25, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOEMZ010000033.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.guided.17, whole genome shotgun sequence	18165..18602	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOEMZ010000037.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.guided.29, whole genome shotgun sequence	2331..3110	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOEMZ010000022.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.denovo.25, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOEMZ010000037.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.guided.29, whole genome shotgun sequence	1335..2201	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOEMZ010000021.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.denovo.24, whole genome shotgun sequence	6582..7487	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOEMZ010000038.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.guided.31, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOEMZ010000020.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.denovo.23, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEMZ010000036.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.guided.28, whole genome shotgun sequence	1685..2898	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOEMZ010000022.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.denovo.25, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOEMZ010000037.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.guided.29, whole genome shotgun sequence	419..1075	Ciprofloxacin	AY070235	sul1	100	840/840	ABOEMZ010000021.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.denovo.24, whole genome shotgun sequence	432..1271	Sulfamethoxazole	U12338	sul1	100	840/840	ABOEMZ010000039.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.guided.32, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOEMZ010000020.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.denovo.23, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEMZ010000035.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.guided.27, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOEMZ010000020.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.denovo.23, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOEMZ010000035.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.guided.27, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOEMZ010000017.1 Salmonella enterica strain PNUSAS354328 SAMN35716115-rid18374593.denovo.19, whole genome shotgun sequence	4434..4684																																																						avrA	ABOEMZ010000002.1	586519..587388	99.77	870	0						
GCA_032891505.1_PDT001777647.1_genomic.fna	Salmonella_enterica	0.5196	214.704 KB	10	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEND010000003.1 Salmonella enterica strain PNUSAS354257 SAMN35716140-rid18374573.denovo.03, whole genome shotgun sequence	147579..148016	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEND010000049.1 Salmonella enterica strain PNUSAS354257 SAMN35716140-rid18374573.guided.38, whole genome shotgun sequence	937..1374	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABOEND010000025.1 Salmonella enterica strain PNUSAS354257 SAMN35716140-rid18374573.denovo.25, whole genome shotgun sequence	12885..13527																																																																	
GCA_032891515.1_PDT001777650.1_genomic.fna	Salmonella_enterica	0.5218	411.419 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOENB010000001.1 Salmonella enterica strain PNUSAS354252 SAMN35716119-rid18372913.denovo.01, whole genome shotgun sequence	684047..684484	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOENB010000027.1 Salmonella enterica strain PNUSAS354252 SAMN35716119-rid18372913.guided.17, whole genome shotgun sequence	8856..9293	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOENB010000002.1	563322..564191	99.77	870	0						
GCA_032891545.1_PDT001777648.1_genomic.fna	Salmonella_enterica	0.5213	696.614 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOENC010000001.1 Salmonella enterica strain PNUSAS354927 SAMN35715479-rid18372903.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOENC010000022.1 Salmonella enterica strain PNUSAS354927 SAMN35715479-rid18372903.guided.17, whole genome shotgun sequence	8844..9281	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOENC010000016.1 Salmonella enterica strain PNUSAS354927 SAMN35715479-rid18372903.denovo.19, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABOENC010000017.1 Salmonella enterica strain PNUSAS354927 SAMN35715479-rid18372903.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABOENC010000002.1	553636..554505	99.54	870	0						
GCA_032891565.1_PDT001777645.1_genomic.fna	Salmonella_enterica	0.5204	695.717 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOENF010000001.1 Salmonella enterica strain PNUSAS355326 SAMN35716112-rid18372883.denovo.01, whole genome shotgun sequence	338793..339230	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOENF010000026.1 Salmonella enterica strain PNUSAS355326 SAMN35716112-rid18372883.guided.15, whole genome shotgun sequence	10412..10849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032891585.1_PDT001777646.1_genomic.fna	Salmonella_enterica	0.5206	301.882 KB	6	aroC_118,dnaN_175,hemD_8,hisD_115,purE_88,sucA_906,thrA_84	6063	35:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,Col440II	aroC	100	100	aroC_118	dnaN	100	100	dnaN_175	hemD	100	100	hemD_8	hisD	100	100	hisD_115	purE	100	100	purE_88	sucA	100	100	sucA_906	thrA	100	100	thrA_84	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOENE010000005.1 Salmonella enterica strain PNUSAS354258 SAMN35716131-rid18372893.denovo.05, whole genome shotgun sequence	276860..277297	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOENE010000044.1 Salmonella enterica strain PNUSAS354258 SAMN35716131-rid18372893.guided.27, whole genome shotgun sequence	13032..13469	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	ABOENE010000032.1 Salmonella enterica strain PNUSAS354258 SAMN35716131-rid18372893.denovo.35, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440II	97.16	282 / 282	ABOENE010000029.1 Salmonella enterica strain PNUSAS354258 SAMN35716131-rid18372893.denovo.32, whole genome shotgun sequence	5136..5417																																																avrA	ABOENE010000001.1	143072..143941	99.08	870	0						
GCA_032891625.1_PDT001777642.1_genomic.fna	Salmonella_enterica	0.5214	489.867 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOENI010000001.1 Salmonella enterica strain PNUSAS355317 SAMN35716054-rid18374553.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOENI010000031.1 Salmonella enterica strain PNUSAS355317 SAMN35716054-rid18374553.guided.22, whole genome shotgun sequence	2242..2679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOENI010000019.1 Salmonella enterica strain PNUSAS355317 SAMN35716054-rid18374553.denovo.20, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABOENI010000021.1 Salmonella enterica strain PNUSAS355317 SAMN35716054-rid18374553.denovo.23, whole genome shotgun sequence	3379..3640																																																avrA	ABOENI010000002.1	553678..554547	99.54	870	0						
GCA_032891765.1_PDT001948661.1_genomic.fna	Salmonella_enterica	0.5211	567.244 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOENL010000001.1 Salmonella enterica strain PNUSAS393730 SAMN37898908-rid19914233.denovo.01, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOENL010000021.1 Salmonella enterica strain PNUSAS393730 SAMN37898908-rid19914233.guided.14, whole genome shotgun sequence	2403..2840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOENL010000003.1	160347..161216	99.54	870	0						
GCA_032891785.1_PDT001948663.1_genomic.fna	Salmonella_enterica	0.5218	457.246 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOENK010000007.1 Salmonella enterica strain PNUSAS393782 SAMN37898901-rid19914253.denovo.07, whole genome shotgun sequence	255933..256370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOENK010000025.1 Salmonella enterica strain PNUSAS393782 SAMN37898901-rid19914253.guided.19, whole genome shotgun sequence	5843..6280	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOENK010000002.1	555711..556579	99.425	870	0						
GCA_032891825.1_PDT001777685.1_genomic.fna	Salmonella_enterica	0.5217	222.456 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOENO010000001.1 Salmonella enterica strain PNUSAS354261 SAMN35716132-rid18373053.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOENO010000044.1 Salmonella enterica strain PNUSAS354261 SAMN35716132-rid18373053.guided.29, whole genome shotgun sequence	32296..32733	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOENO010000002.1	208425..209293	99.77	870	0						
GCA_032891865.1_PDT001777643.1_genomic.fna	Salmonella_enterica	0.5214	176.892 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOENQ010000004.1 Salmonella enterica strain PNUSAS355393 SAMN35715450-rid18372873.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOENQ010000052.1 Salmonella enterica strain PNUSAS355393 SAMN35715450-rid18372873.denovo.54, whole genome shotgun sequence	1251..1381	enterobacteriales	IncFIB(S)	100	643 / 643	ABOENQ010000016.1 Salmonella enterica strain PNUSAS355393 SAMN35715450-rid18372873.denovo.16, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	ABOENQ010000016.1 Salmonella enterica strain PNUSAS355393 SAMN35715450-rid18372873.denovo.16, whole genome shotgun sequence	30407..30668																																									avrA	ABOENQ010000001.1	401622..402490	100	869	0						
GCA_032891885.1_PDT001777639.1_genomic.fna	Salmonella_enterica	0.5206	477.929 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOENR010000001.1 Salmonella enterica strain PNUSAS354256 SAMN35716129-rid18374543.denovo.01, whole genome shotgun sequence	780488..780925	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOENR010000024.1 Salmonella enterica strain PNUSAS354256 SAMN35716129-rid18374543.guided.12, whole genome shotgun sequence	43923..44360	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOENR010000016.1 Salmonella enterica strain PNUSAS354256 SAMN35716129-rid18374543.denovo.18, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOENR010000018.1 Salmonella enterica strain PNUSAS354256 SAMN35716129-rid18374543.denovo.21, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.93	374 / 374	ABOENR010000012.1 Salmonella enterica strain PNUSAS354256 SAMN35716129-rid18374543.denovo.13, whole genome shotgun sequence	32011..32384																																									avrA	ABOENR010000002.1	553689..554558	99.54	870	0						
GCA_032891905.1_PDT001777640.1_genomic.fna	Salmonella_enterica	0.5182	235.108 KB	7	aroC_361,dnaN_327,hemD_258,hisD_415,purE_366,sucA_329,thrA_363	2416	60:z10:z39	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_361	dnaN	100	100	dnaN_327	hemD	100	100	hemD_258	hisD	100	100	hisD_415	purE	100	100	purE_366	sucA	100	100	sucA_329	thrA	100	100	thrA_363	60	z10	z39	Salmonella enterica subspecies salamae (subspecies II)	II 60:z10:z39	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	91.55	438/438	ABOENS010000010.1 Salmonella enterica strain PNUSAS355361 SAMN35715464-rid18372863.denovo.10, whole genome shotgun sequence	46092..46529	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	91.55	438/438	ABOENS010000055.1 Salmonella enterica strain PNUSAS355361 SAMN35715464-rid18372863.guided.34, whole genome shotgun sequence	5293..5730	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOENS010000012.1	142118..142978	92.218	861	0						
GCA_032891945.1_PDT001777636.1_genomic.fna	Salmonella_enterica	0.5208	489.745 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOENU010000001.1 Salmonella enterica strain PNUSAS355367 SAMN35715458-rid18372843.denovo.01, whole genome shotgun sequence	815096..815533	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABOENU010000015.1 Salmonella enterica strain PNUSAS355367 SAMN35715458-rid18372843.denovo.17, whole genome shotgun sequence	573..1403	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABOENU010000015.1 Salmonella enterica strain PNUSAS355367 SAMN35715458-rid18372843.denovo.17, whole genome shotgun sequence	1409..2212	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABOENU010000025.1 Salmonella enterica strain PNUSAS355367 SAMN35715458-rid18372843.guided.12, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABOENU010000028.1 Salmonella enterica strain PNUSAS355367 SAMN35715458-rid18372843.guided.21, whole genome shotgun sequence	5239..6069	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABOENU010000028.1 Salmonella enterica strain PNUSAS355367 SAMN35715458-rid18372843.guided.21, whole genome shotgun sequence	4430..5233	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOENU010000019.1 Salmonella enterica strain PNUSAS355367 SAMN35715458-rid18372843.denovo.24, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOENU010000029.1 Salmonella enterica strain PNUSAS355367 SAMN35715458-rid18372843.guided.23, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOENU010000015.1 Salmonella enterica strain PNUSAS355367 SAMN35715458-rid18372843.denovo.17, whole genome shotgun sequence	2273..3088	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOENU010000028.1 Salmonella enterica strain PNUSAS355367 SAMN35715458-rid18372843.guided.21, whole genome shotgun sequence	3554..4369	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOENU010000012.1 Salmonella enterica strain PNUSAS355367 SAMN35715458-rid18372843.denovo.14, whole genome shotgun sequence	32997..33639	enterobacteriales	IncFII(S)	100	262 / 262	ABOENU010000016.1 Salmonella enterica strain PNUSAS355367 SAMN35715458-rid18372843.denovo.19, whole genome shotgun sequence	3446..3707		enterobacteriales	IncX1	95.76	377 / 377	ABOENU010000015.1 Salmonella enterica strain PNUSAS355367 SAMN35715458-rid18372843.denovo.17, whole genome shotgun sequence	13377..13753																																									avrA	ABOENU010000002.1	553188..554057	99.54	870	0						
GCA_032891965.1_PDT001777637.1_genomic.fna	Salmonella_enterica	0.5219	367.113 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOENT010000001.1 Salmonella enterica strain PNUSAS354263 SAMN35716118-rid18374533.denovo.01, whole genome shotgun sequence	287432..287869	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOENT010000026.1 Salmonella enterica strain PNUSAS354263 SAMN35716118-rid18374533.guided.20, whole genome shotgun sequence	20588..21025	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOENT010000009.1	173735..174603	99.195	870	0						
GCA_032891985.1_PDT001777635.1_genomic.fna	Salmonella_enterica	0.5217	432.562 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOENV010000001.1 Salmonella enterica strain PNUSAS355399 SAMN35715484-rid18372833.denovo.01, whole genome shotgun sequence	247623..248060	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOENV010000027.1 Salmonella enterica strain PNUSAS355399 SAMN35715484-rid18372833.guided.22, whole genome shotgun sequence	4346..4783	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOENV010000002.1	39478..40347	99.425	870	0						
GCA_032892005.1_PDT001777634.1_genomic.fna	Salmonella_enterica	0.522	513.495 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	3	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1C,blaTEM-1B,blaTEM-1C,blaTEM-1B	0		1	IncFII,IncFII	aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOENW010000001.1 Salmonella enterica strain PNUSAS355404 SAMN35715486-rid18374523.denovo.01, whole genome shotgun sequence	666959..667396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOENW010000033.1 Salmonella enterica strain PNUSAS355404 SAMN35715486-rid18374523.guided.22, whole genome shotgun sequence	18896..19333	Amikacin, Tobramycin	NC_003197	blaTEM-1C	99.88	861/861	ABOENW010000015.1 Salmonella enterica strain PNUSAS355404 SAMN35715486-rid18374523.denovo.15, whole genome shotgun sequence	14122..14982	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1B	99.88	861/861	ABOENW010000015.1 Salmonella enterica strain PNUSAS355404 SAMN35715486-rid18374523.denovo.15, whole genome shotgun sequence	14122..14982	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1C	99.88	861/861	ABOENW010000032.1 Salmonella enterica strain PNUSAS355404 SAMN35715486-rid18374523.guided.20, whole genome shotgun sequence	12627..13487	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1B	99.88	861/861	ABOENW010000032.1 Salmonella enterica strain PNUSAS355404 SAMN35715486-rid18374523.guided.20, whole genome shotgun sequence	12627..13487	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFII	99.24	262 / 261	ABOENW010000015.1 Salmonella enterica strain PNUSAS355404 SAMN35715486-rid18374523.denovo.15, whole genome shotgun sequence	10495..10756	enterobacteriales	IncFII	99.24	262 / 261	ABOENW010000032.1 Salmonella enterica strain PNUSAS355404 SAMN35715486-rid18374523.guided.20, whole genome shotgun sequence	16853..17114																																																avrA	ABOENW010000003.1	408098..408967	99.195	870	0						
GCA_032892015.1_PDT001777633.1_genomic.fna	Salmonella_enterica	0.5216	236.087 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOENX010000001.1 Salmonella enterica strain PNUSAS355230 SAMN35716147-rid18372823.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOENX010000064.1 Salmonella enterica strain PNUSAS355230 SAMN35716147-rid18372823.guided.46, whole genome shotgun sequence	51..488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOENX010000038.1 Salmonella enterica strain PNUSAS355230 SAMN35716147-rid18372823.denovo.38, whole genome shotgun sequence	6822..7464	enterobacteriales	IncFII(S)	100	262 / 262	ABOENX010000037.1 Salmonella enterica strain PNUSAS355230 SAMN35716147-rid18372823.denovo.37, whole genome shotgun sequence	15758..16019		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOENX010000029.1 Salmonella enterica strain PNUSAS355230 SAMN35716147-rid18372823.denovo.29, whole genome shotgun sequence	25547..25688																																									avrA	ABOENX010000005.1	209222..210090	100	869	0						
GCA_032892065.1_PDT001777630.1_genomic.fna	Salmonella_enterica	0.521	271.79 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2*	34*	4:i:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2	0		1	p0111	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	99.8003992015968	100	thrA_2*	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOENZ010000001.1 Salmonella enterica strain PNUSAS355355 SAMN35715467-rid18372803.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOENZ010000033.1 Salmonella enterica strain PNUSAS355355 SAMN35715467-rid18372803.denovo.35, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOENZ010000033.1 Salmonella enterica strain PNUSAS355355 SAMN35715467-rid18372803.denovo.35, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOENZ010000051.1 Salmonella enterica strain PNUSAS355355 SAMN35715467-rid18372803.guided.34, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOENZ010000051.1 Salmonella enterica strain PNUSAS355355 SAMN35715467-rid18372803.guided.34, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOENZ010000052.1 Salmonella enterica strain PNUSAS355355 SAMN35715467-rid18372803.guided.38, whole genome shotgun sequence	3317..3754	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOENZ010000042.1 Salmonella enterica strain PNUSAS355355 SAMN35715467-rid18372803.denovo.47, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOENZ010000054.1 Salmonella enterica strain PNUSAS355355 SAMN35715467-rid18372803.guided.46, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOENZ010000033.1 Salmonella enterica strain PNUSAS355355 SAMN35715467-rid18372803.denovo.35, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOENZ010000051.1 Salmonella enterica strain PNUSAS355355 SAMN35715467-rid18372803.guided.34, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	p0111	99.32	885 / 885	ABOENZ010000015.1 Salmonella enterica strain PNUSAS355355 SAMN35715467-rid18372803.denovo.15, whole genome shotgun sequence	66354..67238																																																						avrA	ABOENZ010000002.1	434591..435460	99.885	870	0						
GCA_032892105.1_PDT001777627.1_genomic.fna	Salmonella_enterica	0.5229	527.224 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEOB010000001.1 Salmonella enterica strain PNUSAS355356 SAMN35715457-rid18374503.denovo.01, whole genome shotgun sequence	615985..616422	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOEOB010000025.1 Salmonella enterica strain PNUSAS355356 SAMN35715457-rid18374503.guided.19, whole genome shotgun sequence	5907..6344	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEOB010000003.1	149828..150697	99.655	870	0						
GCA_032892125.1_PDT001777626.1_genomic.fna	Salmonella_enterica	0.5215	218.429 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEOC010000002.1 Salmonella enterica strain PNUSAS355405 SAMN35715487-rid18371643.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEOC010000049.1 Salmonella enterica strain PNUSAS355405 SAMN35715487-rid18371643.guided.21, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOEOC010000016.1 Salmonella enterica strain PNUSAS355405 SAMN35715487-rid18371643.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOEOC010000016.1 Salmonella enterica strain PNUSAS355405 SAMN35715487-rid18371643.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABOEOC010000004.1	174642..175510	100	869	0						
GCA_032892145.1_PDT001777624.1_genomic.fna	Salmonella_enterica	0.5211	394.895 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEOE010000001.1 Salmonella enterica strain PNUSAS354934 SAMN35715480-rid18374483.denovo.01, whole genome shotgun sequence	477888..478325	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEOE010000032.1 Salmonella enterica strain PNUSAS354934 SAMN35715480-rid18374483.guided.20, whole genome shotgun sequence	12971..13408	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEOE010000002.1	145182..146051	99.31	870	0						
GCA_032892165.1_PDT001777625.1_genomic.fna	Salmonella_enterica	0.5219	503.995 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncFII(29),IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEOD010000001.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.denovo.01, whole genome shotgun sequence	462724..463161	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOEOD010000023.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.denovo.26, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOEOD010000033.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.guided.15, whole genome shotgun sequence	31777..32214	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOEOD010000036.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.guided.27, whole genome shotgun sequence	2052..2831	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOEOD010000023.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.denovo.26, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOEOD010000036.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.guided.27, whole genome shotgun sequence	1056..1922	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOEOD010000018.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.denovo.20, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOEOD010000042.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.guided.36, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOEOD010000018.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.denovo.20, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEOD010000037.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.guided.29, whole genome shotgun sequence	785..1998	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABOEOD010000038.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.guided.30, whole genome shotgun sequence	785..1998	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOEOD010000023.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.denovo.26, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOEOD010000036.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.guided.27, whole genome shotgun sequence	140..796	Ciprofloxacin	AY070235	sul1	100	840/840	ABOEOD010000018.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.denovo.20, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABOEOD010000041.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.guided.34, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOEOD010000018.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.denovo.20, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEOD010000039.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.guided.31, whole genome shotgun sequence	868..2142	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOEOD010000018.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.denovo.20, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABOEOD010000040.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.guided.33, whole genome shotgun sequence	290..763	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(29)	100	259 / 259	ABOEOD010000014.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.denovo.14, whole genome shotgun sequence	60294..60552	enterobacteriales	IncR	100	251 / 251	ABOEOD010000016.1 Salmonella enterica strain PNUSAS354930 SAMN35715504-rid18374493.denovo.18, whole genome shotgun sequence	5236..5486																																																avrA	ABOEOD010000002.1	553474..554343	99.77	870	0						
GCA_032892185.1_PDT001777623.1_genomic.fna	Salmonella_enterica	0.5214	269.426 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEOF010000002.1 Salmonella enterica strain PNUSAS354925 SAMN35715472-rid18372783.denovo.02, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEOF010000043.1 Salmonella enterica strain PNUSAS354925 SAMN35715472-rid18372783.guided.28, whole genome shotgun sequence	10626..11063	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col440I	93.86	114 / 114	ABOEOF010000032.1 Salmonella enterica strain PNUSAS354925 SAMN35715472-rid18372783.denovo.35, whole genome shotgun sequence	2734..2847	enterobacteriales	IncFIB(S)	100	643 / 643	ABOEOF010000023.1 Salmonella enterica strain PNUSAS354925 SAMN35715472-rid18372783.denovo.23, whole genome shotgun sequence	44715..45357		enterobacteriales	IncFII(S)	100	262 / 262	ABOEOF010000023.1 Salmonella enterica strain PNUSAS354925 SAMN35715472-rid18372783.denovo.23, whole genome shotgun sequence	29370..29631																																									avrA	ABOEOF010000001.1	452039..452908	99.885	870	0						
GCA_032892205.1_PDT001777622.1_genomic.fna	Salmonella_enterica	0.5216	223.094 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(3)-VIa,aac(6')-Iaa,aac(3)-VIa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEOH010000002.1 Salmonella enterica strain PNUSAS355398 SAMN35715445-rid18372773.denovo.02, whole genome shotgun sequence	69074..69511	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOEOH010000018.1 Salmonella enterica strain PNUSAS355398 SAMN35715445-rid18372773.denovo.18, whole genome shotgun sequence	74142..75044	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aac(6')-Iaa	99.77	438/438	ABOEOH010000056.1 Salmonella enterica strain PNUSAS355398 SAMN35715445-rid18372773.guided.30, whole genome shotgun sequence	20458..20895	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOEOH010000059.1 Salmonella enterica strain PNUSAS355398 SAMN35715445-rid18372773.guided.47, whole genome shotgun sequence	715..1617	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	100	643 / 643	ABOEOH010000019.1 Salmonella enterica strain PNUSAS355398 SAMN35715445-rid18372773.denovo.19, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOEOH010000019.1 Salmonella enterica strain PNUSAS355398 SAMN35715445-rid18372773.denovo.19, whole genome shotgun sequence	30407..30668		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEOH010000018.1 Salmonella enterica strain PNUSAS355398 SAMN35715445-rid18372773.denovo.18, whole genome shotgun sequence	81567..81708																																									avrA	ABOEOH010000009.1	39414..40282	100	869	0						
GCA_032892285.1_PDT001777614.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEOK010000001.1 Salmonella enterica strain PNUSAS355369 SAMN35715415-rid18374443.denovo.01, whole genome shotgun sequence	502641..503078	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEOK010000025.1 Salmonella enterica strain PNUSAS355369 SAMN35715415-rid18374443.guided.17, whole genome shotgun sequence	10068..10505	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEOK010000013.1 Salmonella enterica strain PNUSAS355369 SAMN35715415-rid18374443.denovo.13, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABOEOK010000017.1 Salmonella enterica strain PNUSAS355369 SAMN35715415-rid18374443.denovo.20, whole genome shotgun sequence	3436..3697																																																avrA	ABOEOK010000002.1	553636..554505	99.54	870	0						
GCA_032892305.1_PDT001777613.1_genomic.fna	Salmonella_enterica	0.5226	245.299 KB	6	aroC_231,dnaN_38,hemD_422,hisD_651,purE_236,sucA_340,thrA_209	2729	7:a:e,n,z15	4	aadA1,aadA1,aadA1,aadA1,floR,floR,sul3,sul3,tet(A),tet(A)	1	parC_p.T57S	1	IncFII	aroC	100	100	aroC_231	dnaN	100	100	dnaN_38	hemD	100	100	hemD_422	hisD	100	100	hisD_651	purE	100	100	purE_236	sucA	100	100	sucA_340	thrA	100	100	thrA_209	7	a	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Denver		O	H1_fliC	H2_fljB	aadA1	99.87	792/792	ABOEOL010000030.1 Salmonella enterica strain PNUSAS355365 SAMN35715461-rid18372743.denovo.32, whole genome shotgun sequence	1160..1951	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	ABOEOL010000030.1 Salmonella enterica strain PNUSAS355365 SAMN35715461-rid18372743.denovo.32, whole genome shotgun sequence	1160..1951	Spectinomycin, Streptomycin	JQ414041	aadA1	99.87	792/792	ABOEOL010000048.1 Salmonella enterica strain PNUSAS355365 SAMN35715461-rid18372743.guided.31, whole genome shotgun sequence	4530..5321	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	ABOEOL010000048.1 Salmonella enterica strain PNUSAS355365 SAMN35715461-rid18372743.guided.31, whole genome shotgun sequence	4530..5321	Spectinomycin, Streptomycin	JQ414041	floR	98.02	1214/1215	ABOEOL010000029.1 Salmonella enterica strain PNUSAS355365 SAMN35715461-rid18372743.denovo.30, whole genome shotgun sequence	896..2109	Chloramphenicol, Florfenicol	AF118107	floR	98.02	1214/1215	ABOEOL010000050.1 Salmonella enterica strain PNUSAS355365 SAMN35715461-rid18372743.guided.40, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul3	100	792/792	ABOEOL010000030.1 Salmonella enterica strain PNUSAS355365 SAMN35715461-rid18372743.denovo.32, whole genome shotgun sequence	3633..4424	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOEOL010000048.1 Salmonella enterica strain PNUSAS355365 SAMN35715461-rid18372743.guided.31, whole genome shotgun sequence	2057..2848	Sulfamethoxazole	AJ459418	tet(A)	100	1275/1275	ABOEOL010000029.1 Salmonella enterica strain PNUSAS355365 SAMN35715461-rid18372743.denovo.30, whole genome shotgun sequence	2710..3984	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEOL010000049.1 Salmonella enterica strain PNUSAS355365 SAMN35715461-rid18372743.guided.34, whole genome shotgun sequence	4292..5566	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII	99.23	261 / 261	ABOEOL010000020.1 Salmonella enterica strain PNUSAS355365 SAMN35715461-rid18372743.denovo.20, whole genome shotgun sequence	61219..61479																																																																	
GCA_032892325.1_PDT001777611.1_genomic.fna	Salmonella_enterica	0.5206	406.451 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEON010000001.1 Salmonella enterica strain PNUSAS355370 SAMN35715463-rid18371613.denovo.01, whole genome shotgun sequence	502951..503388	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEON010000032.1 Salmonella enterica strain PNUSAS355370 SAMN35715463-rid18371613.guided.26, whole genome shotgun sequence	1120..1557	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEON010000014.1 Salmonella enterica strain PNUSAS355370 SAMN35715463-rid18371613.denovo.14, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABOEON010000014.1 Salmonella enterica strain PNUSAS355370 SAMN35715463-rid18371613.denovo.14, whole genome shotgun sequence	53092..53353		enterobacteriales	IncX1	98.93	374 / 374	ABOEON010000015.1 Salmonella enterica strain PNUSAS355370 SAMN35715463-rid18371613.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABOEON010000002.1	553696..554565	99.54	870	0						
GCA_032892365.1_PDT001777608.1_genomic.fna	Salmonella_enterica	0.5214	456.079 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEOP010000005.1 Salmonella enterica strain PNUSAS355394 SAMN35715449-rid18372713.denovo.05, whole genome shotgun sequence	162376..162813	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEOP010000032.1 Salmonella enterica strain PNUSAS355394 SAMN35715449-rid18372713.guided.20, whole genome shotgun sequence	12266..12703	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEOP010000017.1 Salmonella enterica strain PNUSAS355394 SAMN35715449-rid18372713.denovo.17, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOEOP010000017.1 Salmonella enterica strain PNUSAS355394 SAMN35715449-rid18372713.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABOEOP010000001.1	553071..553940	99.54	870	0						
GCA_032892385.1_PDT001777607.1_genomic.fna	Salmonella_enterica	0.5214	287.568 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEOQ010000001.1 Salmonella enterica strain PNUSAS355401 SAMN35715490-rid18374423.denovo.01, whole genome shotgun sequence	790194..790631	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEOQ010000049.1 Salmonella enterica strain PNUSAS355401 SAMN35715490-rid18374423.guided.23, whole genome shotgun sequence	11535..11972	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOEOQ010000034.1 Salmonella enterica strain PNUSAS355401 SAMN35715490-rid18374423.denovo.37, whole genome shotgun sequence	1506..1636	enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOEOQ010000037.1 Salmonella enterica strain PNUSAS355401 SAMN35715490-rid18374423.denovo.40, whole genome shotgun sequence	547..675		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOEOQ010000025.1 Salmonella enterica strain PNUSAS355401 SAMN35715490-rid18374423.denovo.26, whole genome shotgun sequence	17647..17788																																									avrA	ABOEOQ010000007.1	39421..40290	98.966	870	0						
GCA_032892405.1_PDT001777606.1_genomic.fna	Salmonella_enterica	0.5209	420.652 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEOO010000001.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.denovo.01, whole genome shotgun sequence	461518..461955	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOEOO010000027.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.denovo.30, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	97.95	438/438	ABOEOO010000034.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.guided.27, whole genome shotgun sequence	9593..10030	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOEOO010000036.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.guided.33, whole genome shotgun sequence	2795..3574	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOEOO010000027.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.denovo.30, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOEOO010000036.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.guided.33, whole genome shotgun sequence	1799..2665	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	100	906/906	ABOEOO010000020.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.denovo.20, whole genome shotgun sequence	16286..17191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	ABOEOO010000039.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.guided.36, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOEOO010000020.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.denovo.20, whole genome shotgun sequence	4372..5585	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEOO010000038.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.guided.35, whole genome shotgun sequence	1800..3013	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOEOO010000027.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.denovo.30, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOEOO010000036.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.guided.33, whole genome shotgun sequence	883..1539	Ciprofloxacin	AY070235	sul1	100	840/840	ABOEOO010000020.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.denovo.20, whole genome shotgun sequence	10136..10975	Sulfamethoxazole	U12338	sul1	100	840/840	ABOEOO010000040.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.guided.37, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOEOO010000020.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.denovo.20, whole genome shotgun sequence	6186..7460	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEOO010000037.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.guided.34, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOEOO010000020.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.denovo.20, whole genome shotgun sequence	8618..9091	Trimethoprim	X00926	dfrA1	100	474/474	ABOEOO010000037.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.guided.34, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOEOO010000020.1 Salmonella enterica strain PNUSAS354924 SAMN35715481-rid18371603.denovo.20, whole genome shotgun sequence	22516..22766																																																						avrA	ABOEOO010000003.1	182527..183396	98.966	870	0						
GCA_032892425.1_PDT001777605.1_genomic.fna	Salmonella_enterica	0.5212	223.137 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEOR010000002.1 Salmonella enterica strain PNUSAS355400 SAMN35715491-rid18374413.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEOR010000051.1 Salmonella enterica strain PNUSAS355400 SAMN35715491-rid18374413.guided.23, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOEOR010000017.1 Salmonella enterica strain PNUSAS355400 SAMN35715491-rid18374413.denovo.17, whole genome shotgun sequence	44660..45302	enterobacteriales	IncFII(S)	100	262 / 262	ABOEOR010000017.1 Salmonella enterica strain PNUSAS355400 SAMN35715491-rid18374413.denovo.17, whole genome shotgun sequence	60387..60648		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOEOR010000020.1 Salmonella enterica strain PNUSAS355400 SAMN35715491-rid18374413.denovo.20, whole genome shotgun sequence	66855..66996																																									avrA	ABOEOR010000009.1	39733..40601	100	869	0						
GCA_032892465.1_PDT001777603.1_genomic.fna	Salmonella_enterica	0.522	324.41 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEOT010000003.1 Salmonella enterica strain PNUSAS355397 SAMN35715446-rid18372703.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEOT010000052.1 Salmonella enterica strain PNUSAS355397 SAMN35715446-rid18372703.guided.28, whole genome shotgun sequence	27524..27961	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOEOT010000013.1 Salmonella enterica strain PNUSAS355397 SAMN35715446-rid18372703.denovo.13, whole genome shotgun sequence	44647..45289	enterobacteriales	IncFII(S)	100	262 / 262	ABOEOT010000013.1 Salmonella enterica strain PNUSAS355397 SAMN35715446-rid18372703.denovo.13, whole genome shotgun sequence	60374..60635																																																avrA	ABOEOT010000002.1	401535..402403	100	869	0						
GCA_032892525.1_PDT001777596.1_genomic.fna	Salmonella_enterica	0.5206	478.724 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEOY010000001.1 Salmonella enterica strain PNUSAS355374 SAMN35715416-rid18371583.denovo.01, whole genome shotgun sequence	493089..493526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEOY010000029.1 Salmonella enterica strain PNUSAS355374 SAMN35715416-rid18371583.guided.24, whole genome shotgun sequence	826..1263	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEOY010000013.1 Salmonella enterica strain PNUSAS355374 SAMN35715416-rid18371583.denovo.13, whole genome shotgun sequence	9424..10066	enterobacteriales	IncFII(S)	100	262 / 262	ABOEOY010000013.1 Salmonella enterica strain PNUSAS355374 SAMN35715416-rid18371583.denovo.13, whole genome shotgun sequence	54049..54310		enterobacteriales	IncX1	98.93	374 / 374	ABOEOY010000014.1 Salmonella enterica strain PNUSAS355374 SAMN35715416-rid18371583.denovo.14, whole genome shotgun sequence	6868..7241																																									avrA	ABOEOY010000002.1	553553..554422	99.54	870	0						
GCA_032892545.1_PDT001777593.1_genomic.fna	Salmonella_enterica	0.5211	729.564 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEOW010000001.1 Salmonella enterica strain PNUSAS354926 SAMN35715475-rid18372663.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEOW010000024.1 Salmonella enterica strain PNUSAS354926 SAMN35715475-rid18372663.guided.21, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.76	643 / 643	ABOEOW010000015.1 Salmonella enterica strain PNUSAS354926 SAMN35715475-rid18372663.denovo.17, whole genome shotgun sequence	6836..7478	enterobacteriales	IncFII(S)	100	262 / 262	ABOEOW010000017.1 Salmonella enterica strain PNUSAS354926 SAMN35715475-rid18372663.denovo.19, whole genome shotgun sequence	3410..3671																																																avrA	ABOEOW010000003.1	553499..554368	99.54	870	0						
GCA_032892625.1_PDT001777588.1_genomic.fna	Salmonella_enterica	0.5227	398.059 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOEPB010000002.1 Salmonella enterica strain PNUSAS354922 SAMN35715482-rid18372643.denovo.02, whole genome shotgun sequence	667526..667963	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.39	372/438	ABOEPB010000034.1 Salmonella enterica strain PNUSAS354922 SAMN35715482-rid18372643.guided.24, whole genome shotgun sequence	1..372	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEPB010000013.1 Salmonella enterica strain PNUSAS354922 SAMN35715482-rid18372643.denovo.13, whole genome shotgun sequence	69655..69796																																																						avrA	ABOEPB010000001.1	140242..141111	99.31	870	0						
GCA_032892665.1_PDT001777581.1_genomic.fna	Salmonella_enterica	0.5212	473.015 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOEPD010000001.1 Salmonella enterica strain PNUSAS355362 SAMN35715455-rid18372623.denovo.01, whole genome shotgun sequence	422159..422596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOEPD010000036.1 Salmonella enterica strain PNUSAS355362 SAMN35715455-rid18372623.guided.20, whole genome shotgun sequence	12110..12547	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABOEPD010000020.1 Salmonella enterica strain PNUSAS355362 SAMN35715455-rid18372623.denovo.23, whole genome shotgun sequence	1584..1905																																																						avrA	ABOEPD010000003.1	395050..395918	99.425	870	0						
GCA_032892705.1_PDT001777582.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEPF010000001.1 Salmonella enterica strain PNUSAS355378 SAMN35715452-rid18374293.denovo.01, whole genome shotgun sequence	504777..505214	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEPF010000014.1 Salmonella enterica strain PNUSAS355378 SAMN35715452-rid18374293.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOEPF010000014.1 Salmonella enterica strain PNUSAS355378 SAMN35715452-rid18374293.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABOEPF010000002.1	553636..554505	99.54	870	0						
GCA_032892745.1_PDT001777579.1_genomic.fna	Salmonella_enterica	0.5218	275.207 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEPH010000001.1 Salmonella enterica strain PNUSAS354933 SAMN35715505-rid18374283.denovo.01, whole genome shotgun sequence	380041..380478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEPH010000037.1 Salmonella enterica strain PNUSAS354933 SAMN35715505-rid18374283.guided.26, whole genome shotgun sequence	36785..37222	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEPH010000003.1	218734..219602	99.77	870	0						
GCA_032892765.1_PDT001777580.1_genomic.fna	Salmonella_enterica	0.5218	345.656 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEPG010000003.1 Salmonella enterica strain PNUSAS355376 SAMN35715420-rid18372613.denovo.03, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEPG010000040.1 Salmonella enterica strain PNUSAS355376 SAMN35715420-rid18372613.guided.22, whole genome shotgun sequence	34049..34486	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOEPG010000016.1 Salmonella enterica strain PNUSAS355376 SAMN35715420-rid18372613.denovo.16, whole genome shotgun sequence	48410..49052	enterobacteriales	IncFII(S)	100	262 / 262	ABOEPG010000016.1 Salmonella enterica strain PNUSAS355376 SAMN35715420-rid18372613.denovo.16, whole genome shotgun sequence	64137..64398																																																avrA	ABOEPG010000004.1	209589..210457	100	869	0						
GCA_032892825.1_PDT001777577.1_genomic.fna	Salmonella_enterica	0.5219	329.165 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEPJ010000001.1 Salmonella enterica strain PNUSAS355359 SAMN35715413-rid18374273.denovo.01, whole genome shotgun sequence	381670..382107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEPJ010000030.1 Salmonella enterica strain PNUSAS355359 SAMN35715413-rid18374273.guided.24, whole genome shotgun sequence	5619..6056	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEPJ010000002.1	507117..507986	99.885	870	0						
GCA_032892845.1_PDT001777572.1_genomic.fna	Salmonella_enterica	0.5222	441.649 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEPL010000001.1 Salmonella enterica strain PNUSAS354929 SAMN35715476-rid18374243.denovo.01, whole genome shotgun sequence	937879..938316	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOEPL010000021.1 Salmonella enterica strain PNUSAS354929 SAMN35715476-rid18374243.guided.17, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEPL010000002.1	553510..554379	99.655	870	0						
GCA_032892865.1_PDT001777573.1_genomic.fna	Salmonella_enterica	0.5198	525.991 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEPO010000001.1 Salmonella enterica strain PNUSAS355363 SAMN35715469-rid18372593.denovo.01, whole genome shotgun sequence	1338269..1338706	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEPO010000027.1 Salmonella enterica strain PNUSAS355363 SAMN35715469-rid18372593.guided.24, whole genome shotgun sequence	773..1210	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEPO010000007.1	139987..140856	99.425	870	0						
GCA_032892885.1_PDT001777571.1_genomic.fna	Salmonella_enterica	0.5212	696.245 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEPN010000001.1 Salmonella enterica strain PNUSAS354932 SAMN35715477-rid18372583.denovo.01, whole genome shotgun sequence	542744..543181	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEPN010000026.1 Salmonella enterica strain PNUSAS354932 SAMN35715477-rid18372583.guided.16, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEPN010000018.1 Salmonella enterica strain PNUSAS354932 SAMN35715477-rid18372583.denovo.21, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOEPN010000019.1 Salmonella enterica strain PNUSAS354932 SAMN35715477-rid18372583.denovo.22, whole genome shotgun sequence	3388..3649																																																avrA	ABOEPN010000002.1	553636..554505	99.54	870	0						
GCA_032892925.1_PDT001777570.1_genomic.fna	Salmonella_enterica	0.5217	672.046 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_603	2783	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_603	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABOEPP010000001.1 Salmonella enterica strain PNUSAS355403 SAMN35715488-rid18374233.denovo.01, whole genome shotgun sequence	674228..674665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABOEPP010000020.1 Salmonella enterica strain PNUSAS355403 SAMN35715488-rid18374233.guided.11, whole genome shotgun sequence	33334..33771	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEPP010000002.1	496482..497351	99.54	870	0						
GCA_032892945.1_PDT001777561.1_genomic.fna	Salmonella_enterica	0.5207	400.951 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEPT010000001.1 Salmonella enterica strain PNUSAS355357 SAMN35715466-rid18372543.denovo.01, whole genome shotgun sequence	485081..485518	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEPT010000038.1 Salmonella enterica strain PNUSAS355357 SAMN35715466-rid18372543.guided.25, whole genome shotgun sequence	3053..3490	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOEPT010000005.1 Salmonella enterica strain PNUSAS355357 SAMN35715466-rid18372543.denovo.05, whole genome shotgun sequence	388906..389328	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOEPT010000041.1 Salmonella enterica strain PNUSAS355357 SAMN35715466-rid18372543.guided.36, whole genome shotgun sequence	778..1200	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEPT010000002.1	122292..123161	99.195	870	0						
GCA_032892985.1_PDT001777565.1_genomic.fna	Salmonella_enterica	0.5218	400.529 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col156,ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOEPQ010000001.1 Salmonella enterica strain PNUSAS354931 SAMN35715503-rid18374213.denovo.01, whole genome shotgun sequence	543925..544362	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOEPQ010000034.1 Salmonella enterica strain PNUSAS354931 SAMN35715503-rid18374213.guided.19, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	ABOEPQ010000023.1 Salmonella enterica strain PNUSAS354931 SAMN35715503-rid18374213.denovo.26, whole genome shotgun sequence	990..1141	enterobacteriales	ColpVC	98.96	193 / 193	ABOEPQ010000027.1 Salmonella enterica strain PNUSAS354931 SAMN35715503-rid18374213.denovo.30, whole genome shotgun sequence	805..997		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEPQ010000013.1 Salmonella enterica strain PNUSAS354931 SAMN35715503-rid18374213.denovo.13, whole genome shotgun sequence	26092..26233																																																				
GCA_032893025.1_PDT001777560.1_genomic.fna	Salmonella_enterica	0.5211	172.036 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEPU010000007.1 Salmonella enterica strain PNUSAS355395 SAMN35715448-rid18374193.denovo.07, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEPU010000066.1 Salmonella enterica strain PNUSAS355395 SAMN35715448-rid18374193.guided.41, whole genome shotgun sequence	3368..3805	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	98.96	193 / 193	ABOEPU010000056.1 Salmonella enterica strain PNUSAS355395 SAMN35715448-rid18374193.denovo.59, whole genome shotgun sequence	806..998	enterobacteriales	IncFIB(S)	100	643 / 643	ABOEPU010000019.1 Salmonella enterica strain PNUSAS355395 SAMN35715448-rid18374193.denovo.19, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	ABOEPU010000019.1 Salmonella enterica strain PNUSAS355395 SAMN35715448-rid18374193.denovo.19, whole genome shotgun sequence	30407..30668																																									avrA	ABOEPU010000015.1	39348..40216	100	869	0						
GCA_032893065.1_PDT001777557.1_genomic.fna	Salmonella_enterica	0.5212	696.549 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEPX010000001.1 Salmonella enterica strain PNUSAS354928 SAMN35715474-rid18374183.denovo.01, whole genome shotgun sequence	482121..482558	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEPX010000020.1 Salmonella enterica strain PNUSAS354928 SAMN35715474-rid18374183.guided.16, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032893085.1_PDT001777556.1_genomic.fna	Salmonella_enterica	0.5226	360.019 KB	6	aroC_341,dnaN_11,hemD_8,hisD_404,purE_61,sucA_504,thrA_341	2398	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_341	dnaN	100	100	dnaN_11	hemD	100	100	hemD_8	hisD	100	100	hisD_404	purE	100	100	purE_61	sucA	100	100	sucA_504	thrA	100	100	thrA_341	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOEPY010000003.1 Salmonella enterica strain PNUSAS355366 isolate TXACF2300914 SAMN35715502-rid18371533.denovo.03, whole genome shotgun sequence	80095..80532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOEPY010000041.1 Salmonella enterica strain PNUSAS355366 isolate TXACF2300914 SAMN35715502-rid18371533.guided.31, whole genome shotgun sequence	4341..4778	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEPY010000002.1	94379..95248	98.966	870	0						
GCA_032893105.1_PDT001777555.1_genomic.fna	Salmonella_enterica	0.5227	508.363 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEPZ010000001.1 Salmonella enterica strain PNUSAS355353 SAMN35715456-rid18372513.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEPZ010000028.1 Salmonella enterica strain PNUSAS355353 SAMN35715456-rid18372513.guided.17, whole genome shotgun sequence	5981..6418	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEPZ010000002.1	129899..130768	98.966	870	0						
GCA_032893125.1_PDT001777552.1_genomic.fna	Salmonella_enterica	0.5222	858.451 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEQB010000001.1 Salmonella enterica strain PNUSAS355375 SAMN35715418-rid18374173.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOEQB010000014.1 Salmonella enterica strain PNUSAS355375 SAMN35715418-rid18374173.guided.10, whole genome shotgun sequence	8966..9403	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEQB010000003.1	562142..563012	99.656	871	0						
GCA_032893145.1_PDT001777554.1_genomic.fna	Salmonella_enterica	0.5208	444.167 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEQA010000006.1 Salmonella enterica strain PNUSAS355407 SAMN35715483-rid18371523.denovo.06, whole genome shotgun sequence	149617..150054	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEQA010000025.1 Salmonella enterica strain PNUSAS355407 SAMN35715483-rid18371523.guided.17, whole genome shotgun sequence	7718..8155	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032893165.1_PDT001777549.1_genomic.fna	Salmonella_enterica	0.5206	567.88 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncI2(Delta),IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEQE010000001.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.denovo.01, whole genome shotgun sequence	150017..150454	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOEQE010000026.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.denovo.30, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOEQE010000039.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.guided.13, whole genome shotgun sequence	40142..40579	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOEQE010000043.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.guided.33, whole genome shotgun sequence	3622..4401	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOEQE010000026.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.denovo.30, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOEQE010000043.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.guided.33, whole genome shotgun sequence	2626..3492	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOEQE010000027.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.denovo.31, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOEQE010000042.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.guided.29, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOEQE010000023.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.denovo.26, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEQE010000045.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.guided.37, whole genome shotgun sequence	156..1369	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOEQE010000026.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.denovo.30, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOEQE010000043.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.guided.33, whole genome shotgun sequence	1710..2366	Ciprofloxacin	AY070235	sul1	100	840/840	ABOEQE010000026.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.denovo.30, whole genome shotgun sequence	5021..5860	Sulfamethoxazole	U12338	sul1	100	840/840	ABOEQE010000046.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.guided.39, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOEQE010000023.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.denovo.26, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEQE010000044.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.guided.34, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOEQE010000023.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.denovo.26, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOEQE010000044.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.guided.34, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	97.15	316 / 316	ABOEQE010000015.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.denovo.16, whole genome shotgun sequence	30178..30493	enterobacteriales	IncR	100	251 / 251	ABOEQE010000021.1 Salmonella enterica strain PNUSAS354923 SAMN35715478-rid18371503.denovo.23, whole genome shotgun sequence	8547..8797																																																avrA	ABOEQE010000002.1	553474..554343	99.77	870	0						
GCA_032893205.1_PDT001777550.1_genomic.fna	Salmonella_enterica	0.5216	372.755 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEQD010000001.1 Salmonella enterica strain PNUSAS355372 SAMN35715462-rid18374163.denovo.01, whole genome shotgun sequence	268720..269157	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEQD010000031.1 Salmonella enterica strain PNUSAS355372 SAMN35715462-rid18374163.guided.23, whole genome shotgun sequence	11446..11883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEQD010000008.1	140447..141316	99.54	870	0						
GCA_032893225.1_PDT001777548.1_genomic.fna	Salmonella_enterica	0.5216	329.997 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEQF010000001.1 Salmonella enterica strain PNUSAS355402 SAMN35715489-rid18372493.denovo.01, whole genome shotgun sequence	177159..177596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEQF010000026.1 Salmonella enterica strain PNUSAS355402 SAMN35715489-rid18372493.guided.19, whole genome shotgun sequence	15517..15954	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEQF010000002.1	563506..564375	99.77	870	0						
GCA_032893245.1_PDT001777545.1_genomic.fna	Salmonella_enterica	0.5215	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEQH010000001.1 Salmonella enterica strain PNUSAS355360 SAMN35715453-rid18372483.denovo.01, whole genome shotgun sequence	496307..496744	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEQH010000030.1 Salmonella enterica strain PNUSAS355360 SAMN35715453-rid18372483.guided.22, whole genome shotgun sequence	2828..3265	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEQH010000013.1 Salmonella enterica strain PNUSAS355360 SAMN35715453-rid18372483.denovo.13, whole genome shotgun sequence	40541..41183	enterobacteriales	IncFII(S)	100	262 / 262	ABOEQH010000017.1 Salmonella enterica strain PNUSAS355360 SAMN35715453-rid18372483.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABOEQH010000002.1	553636..554505	99.54	870	0						
GCA_032893265.1_PDT001777540.1_genomic.fna	Salmonella_enterica	0.5209	524.229 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEQG010000001.1 Salmonella enterica strain PNUSAS355377 SAMN35715451-rid18374133.denovo.01, whole genome shotgun sequence	821527..821964	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEQG010000021.1 Salmonella enterica strain PNUSAS355377 SAMN35715451-rid18374133.guided.17, whole genome shotgun sequence	15573..16010	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEQG010000002.1	559477..560345	99.31	870	0						
GCA_032893285.1_PDT001777534.1_genomic.fna	Salmonella_enterica	0.5205	439.188 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	-	Salmonella enterica subspecies enterica (subspecies I)	I 9:l,z28:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOEQJ010000001.1 Salmonella enterica strain PNUSAS355354 SAMN35715468-rid18371453.denovo.01, whole genome shotgun sequence	851151..851588	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOEQJ010000026.1 Salmonella enterica strain PNUSAS355354 SAMN35715468-rid18371453.guided.19, whole genome shotgun sequence	1012..1449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEQJ010000002.1	497828..498696	99.425	870	0						
GCA_032893305.1_PDT001777535.1_genomic.fna	Salmonella_enterica	0.5214	430.567 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEQI010000001.1 Salmonella enterica strain PNUSAS355368 SAMN35715459-rid18372443.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEQI010000034.1 Salmonella enterica strain PNUSAS355368 SAMN35715459-rid18372443.guided.22, whole genome shotgun sequence	2524..2961	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEQI010000002.1	504255..505125	99.196	871	0						
GCA_032893345.1_PDT001777531.1_genomic.fna	Salmonella_enterica	0.5204	695.988 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABOEQL010000001.1 Salmonella enterica strain PNUSAS355373 SAMN35715422-rid18372423.denovo.01, whole genome shotgun sequence	643303..643740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABOEQL010000024.1 Salmonella enterica strain PNUSAS355373 SAMN35715422-rid18372423.guided.10, whole genome shotgun sequence	33908..34345	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEQL010000003.1	544263..545131	99.425	870	0						
GCA_032893365.1_PDT001948670.1_genomic.fna	Salmonella_enterica	0.5215	283.342 KB	6	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_58,thrA_4	239	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_4	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEQN010000001.1 Salmonella enterica strain PNUSAS393799 SAMN37898873-rid19914323.denovo.01, whole genome shotgun sequence	601205..601642	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEQN010000044.1 Salmonella enterica strain PNUSAS393799 SAMN37898873-rid19914323.guided.37, whole genome shotgun sequence	1677..2114	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOEQN010000023.1 Salmonella enterica strain PNUSAS393799 SAMN37898873-rid19914323.denovo.24, whole genome shotgun sequence	11013..11655	enterobacteriales	IncFII(Yp)	91.52	224 / 230	ABOEQN010000019.1 Salmonella enterica strain PNUSAS393799 SAMN37898873-rid19914323.denovo.20, whole genome shotgun sequence	5783..6003																																																											
GCA_032894385.1_PDT001948835.1_genomic.fna	Salmonella_enterica	0.5216	737.716 KB	2	aroC_50,dnaN_10,hemD_25,hisD_72,purE_10,sucA_13,thrA_4	414	9:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Eastbourne		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOESL010000001.1 Salmonella enterica strain PNUSAS393886 SAMN37904906-rid19915163.denovo.01, whole genome shotgun sequence	645692..646129	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOESL010000019.1 Salmonella enterica strain PNUSAS393886 SAMN37904906-rid19915163.guided.12, whole genome shotgun sequence	8514..8951	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOESL010000015.1 Salmonella enterica strain PNUSAS393886 SAMN37904906-rid19915163.denovo.18, whole genome shotgun sequence	547..675	enterobacteriales	Col440I	90.27	113 / 114	ABOESL010000014.1 Salmonella enterica strain PNUSAS393886 SAMN37904906-rid19915163.denovo.17, whole genome shotgun sequence	3345..3457																																																avrA	ABOESL010000003.1	152397..153266	99.31	870	0						
GCA_032894405.1_PDT001948834.1_genomic.fna	Salmonella_enterica	0.521	490.138 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOESM010000001.1 Salmonella enterica strain PNUSAS393894 SAMN37904913-rid19915153.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOESM010000023.1 Salmonella enterica strain PNUSAS393894 SAMN37904913-rid19915153.guided.16, whole genome shotgun sequence	43161..43598	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOESM010000014.1 Salmonella enterica strain PNUSAS393894 SAMN37904913-rid19915153.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOESM010000014.1 Salmonella enterica strain PNUSAS393894 SAMN37904913-rid19915153.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOESM010000002.1	585347..586216	99.54	870	0						
GCA_032894445.1_PDT001948822.1_genomic.fna	Salmonella_enterica	0.521	346.754 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOESP010000001.1 Salmonella enterica strain PNUSAS393881 SAMN37904907-rid19915033.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOESP010000034.1 Salmonella enterica strain PNUSAS393881 SAMN37904907-rid19915033.guided.19, whole genome shotgun sequence	34074..34511	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	98.59	142 / 142	ABOESP010000016.1 Salmonella enterica strain PNUSAS393881 SAMN37904907-rid19915033.denovo.16, whole genome shotgun sequence	75556..75697																																																						avrA	ABOESP010000003.1	184950..185818	99.77	870	0						
GCA_032895365.1_PDT001948838.1_genomic.fna	Salmonella_enterica	0.5209	266.638 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEUI010000002.1 Salmonella enterica strain PNUSAS393892 SAMN37904918-rid19915193.denovo.02, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEUI010000046.1 Salmonella enterica strain PNUSAS393892 SAMN37904918-rid19915193.guided.30, whole genome shotgun sequence	6276..6713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABOEUI010000035.1 Salmonella enterica strain PNUSAS393892 SAMN37904918-rid19915193.denovo.38, whole genome shotgun sequence	967..1118																																																						avrA	ABOEUI010000006.1	184070..184938	99.77	870	0						
GCA_032895385.1_PDT001948829.1_genomic.fna	Salmonella_enterica	0.521	282.636 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		1	IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEUK010000001.1 Salmonella enterica strain PNUSAS393889 SAMN37904914-rid19915103.denovo.01, whole genome shotgun sequence	569502..569939	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEUK010000027.1 Salmonella enterica strain PNUSAS393889 SAMN37904914-rid19915103.denovo.27, whole genome shotgun sequence	22741..23577	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEUK010000027.1 Salmonella enterica strain PNUSAS393889 SAMN37904914-rid19915103.denovo.27, whole genome shotgun sequence	21938..22741	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOEUK010000048.1 Salmonella enterica strain PNUSAS393889 SAMN37904914-rid19915103.guided.36, whole genome shotgun sequence	5781..6617	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEUK010000048.1 Salmonella enterica strain PNUSAS393889 SAMN37904914-rid19915103.guided.36, whole genome shotgun sequence	4978..5781	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOEUK010000049.1 Salmonella enterica strain PNUSAS393889 SAMN37904914-rid19915103.guided.37, whole genome shotgun sequence	1682..2119	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOEUK010000021.1 Salmonella enterica strain PNUSAS393889 SAMN37904914-rid19915103.denovo.21, whole genome shotgun sequence	49502..50647	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOEUK010000047.1 Salmonella enterica strain PNUSAS393889 SAMN37904914-rid19915103.guided.35, whole genome shotgun sequence	7323..8468	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.27	1214/1215	ABOEUK010000027.1 Salmonella enterica strain PNUSAS393889 SAMN37904914-rid19915103.denovo.27, whole genome shotgun sequence	26713..27926	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABOEUK010000051.1 Salmonella enterica strain PNUSAS393889 SAMN37904914-rid19915103.guided.43, whole genome shotgun sequence	1507..2720	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEUK010000027.1 Salmonella enterica strain PNUSAS393889 SAMN37904914-rid19915103.denovo.27, whole genome shotgun sequence	21062..21877	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEUK010000048.1 Salmonella enterica strain PNUSAS393889 SAMN37904914-rid19915103.guided.36, whole genome shotgun sequence	4102..4917	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEUK010000027.1 Salmonella enterica strain PNUSAS393889 SAMN37904914-rid19915103.denovo.27, whole genome shotgun sequence	24838..26112	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEUK010000048.1 Salmonella enterica strain PNUSAS393889 SAMN37904914-rid19915103.guided.36, whole genome shotgun sequence	7878..9152	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOEUK010000022.1 Salmonella enterica strain PNUSAS393889 SAMN37904914-rid19915103.denovo.22, whole genome shotgun sequence	17493..17909																																																						avrA	ABOEUK010000002.1	206734..207603	99.885	870	0						
GCA_032895405.1_PDT001948824.1_genomic.fna	Salmonella_enterica	0.522	518.157 KB	3	aroC_81,dnaN_69,hemD_36,hisD_12,purE_68,sucA_12,thrA_17	203	7:y:1,5	2	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-15,blaCTX-M-15	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_69	hemD	100	100	hemD_36	hisD	100	100	hisD_12	purE	100	100	purE_68	sucA	100	100	sucA_12	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEUJ010000001.1 Salmonella enterica strain PNUSAS393904 SAMN37904912-rid19915053.denovo.01, whole genome shotgun sequence	470592..471029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEUJ010000026.1 Salmonella enterica strain PNUSAS393904 SAMN37904912-rid19915053.guided.17, whole genome shotgun sequence	15445..15882	Amikacin, Tobramycin	NC_003197	blaCTX-M-15	100	876/876	ABOEUJ010000014.1 Salmonella enterica strain PNUSAS393904 SAMN37904912-rid19915053.denovo.15, whole genome shotgun sequence	7795..8670	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	ABOEUJ010000025.1 Salmonella enterica strain PNUSAS393904 SAMN37904912-rid19915053.guided.16, whole genome shotgun sequence	20648..21523	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEUJ010000002.1	554490..555359	99.655	870	0						
GCA_032895425.1_PDT001948820.1_genomic.fna	Salmonella_enterica	0.5198	466.52 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEUL010000001.1 Salmonella enterica strain PNUSAS393884 SAMN37904904-rid19915013.denovo.01, whole genome shotgun sequence	287377..287814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEUL010000026.1 Salmonella enterica strain PNUSAS393884 SAMN37904904-rid19915013.guided.20, whole genome shotgun sequence	12130..12567	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABOEUL010000020.1 Salmonella enterica strain PNUSAS393884 SAMN37904904-rid19915013.denovo.23, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABOEUL010000013.1 Salmonella enterica strain PNUSAS393884 SAMN37904904-rid19915013.denovo.13, whole genome shotgun sequence	6118..6651		enterobacteriales	IncX1	98.4	374 / 374	ABOEUL010000016.1 Salmonella enterica strain PNUSAS393884 SAMN37904904-rid19915013.denovo.16, whole genome shotgun sequence	6956..7329																																									avrA	ABOEUL010000008.1	150695..151565	99.196	871	0						
GCA_032895505.1_PDT001948865.1_genomic.fna	Salmonella_enterica	0.521	490.139 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	ABOEUO010000002.1 Salmonella enterica strain PNUSAS393925 SAMN37905035-rid19915453.denovo.02, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABOEUO010000029.1 Salmonella enterica strain PNUSAS393925 SAMN37905035-rid19915453.guided.18, whole genome shotgun sequence	14827..15264	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEUO010000014.1 Salmonella enterica strain PNUSAS393925 SAMN37905035-rid19915453.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOEUO010000014.1 Salmonella enterica strain PNUSAS393925 SAMN37905035-rid19915453.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOEUO010000001.1	585276..586145	99.54	870	0						
GCA_032895525.1_PDT001948862.1_genomic.fna	Salmonella_enterica	0.521	639.828 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOEUP010000001.1 Salmonella enterica strain PNUSAS393927 SAMN37905033-rid19915433.denovo.01, whole genome shotgun sequence	510661..511098	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOEUP010000024.1 Salmonella enterica strain PNUSAS393927 SAMN37905033-rid19915433.guided.14, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEUP010000003.1	544607..545475	99.425	870	0						
GCA_032895545.1_PDT001948861.1_genomic.fna	Salmonella_enterica	0.5214	209.053 KB	8	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEUQ010000010.1 Salmonella enterica strain PNUSAS393921 SAMN37905036-rid19915423.denovo.10, whole genome shotgun sequence	37878..38315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.59	425/438	ABOEUQ010000047.1 Salmonella enterica strain PNUSAS393921 SAMN37905036-rid19915423.guided.42, whole genome shotgun sequence	1..425	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOEUQ010000022.1 Salmonella enterica strain PNUSAS393921 SAMN37905036-rid19915423.denovo.22, whole genome shotgun sequence	34957..35490																																																						avrA	ABOEUQ010000011.1	153747..154615	99.54	870	0						
GCA_032895565.1_PDT001948860.1_genomic.fna	Salmonella_enterica	0.5198	365.62 KB	3	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	16	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,aadA2b,aadA2,aph(3')-Ia,blaCTX-M-15,blaCTX-M-15,fosA6,fosA6,floR,cmlA1,floR,cmlA1,sul2,sul1,sul3,sul2,sul1,sul3,tet(A),tet(A),dfrA12,dfrA12	4	gyrA_p.S83F,gyrA_p.D87G,parC_p.T57S,parC_p.S80I	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEUR010000001.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.denovo.01, whole genome shotgun sequence	1193333..1193770	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	837/837	ABOEUR010000021.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.denovo.24, whole genome shotgun sequence	7618..8454	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEUR010000021.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.denovo.24, whole genome shotgun sequence	8454..9257	Streptomycin	AF321551	aadA1	100	792/792	ABOEUR010000023.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.denovo.29, whole genome shotgun sequence	1556..2347	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOEUR010000037.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.denovo.48, whole genome shotgun sequence	134..949	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	V00359	aac(6')-Iaa	98.63	438/438	ABOEUR010000049.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.guided.12, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	837/837	ABOEUR010000052.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.guided.25, whole genome shotgun sequence	5119..5955	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEUR010000052.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.guided.25, whole genome shotgun sequence	4316..5119	Streptomycin	AF321551	aadA1	100	792/792	ABOEUR010000054.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.guided.28, whole genome shotgun sequence	1597..2388	Spectinomycin, Streptomycin	JQ414041	aadA2b	99.87	780/780	ABOEUR010000057.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.guided.40, whole genome shotgun sequence	1685..2464	Spectinomycin, Streptomycin	D43625	aadA2	100	792/792	ABOEUR010000058.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.guided.43, whole genome shotgun sequence	952..1743	Spectinomycin, Streptomycin	JQ364967	aph(3')-Ia	100	816/816	ABOEUR010000059.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.guided.47, whole genome shotgun sequence	126..941	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	V00359	blaCTX-M-15	100	876/876	ABOEUR010000030.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.denovo.38, whole genome shotgun sequence	254..1129	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	ABOEUR010000056.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.guided.37, whole genome shotgun sequence	295..1170	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	fosA6	98.81	420/420	ABOEUR010000029.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.denovo.36, whole genome shotgun sequence	1614..2033	Fosfomycin	KU254579	fosA6	98.81	420/420	ABOEUR010000055.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.guided.35, whole genome shotgun sequence	1614..2033	Fosfomycin	KU254579	floR	98.19	1214/1215	ABOEUR010000021.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.denovo.24, whole genome shotgun sequence	3269..4482	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOEUR010000023.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.denovo.29, whole genome shotgun sequence	204..1463	Chloramphenicol	M64556	floR	98.19	1214/1215	ABOEUR010000052.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.guided.25, whole genome shotgun sequence	9091..10304	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOEUR010000054.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.guided.28, whole genome shotgun sequence	245..1504	Chloramphenicol	M64556	sul2	99.88	816/816	ABOEUR010000021.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.denovo.24, whole genome shotgun sequence	9318..10133	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOEUR010000022.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.denovo.27, whole genome shotgun sequence	447..1286	Sulfamethoxazole	U12338	sul3	100	792/792	ABOEUR010000023.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.denovo.29, whole genome shotgun sequence	4029..4820	Sulfamethoxazole	AJ459418	sul2	99.88	816/816	ABOEUR010000052.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.guided.25, whole genome shotgun sequence	3440..4255	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOEUR010000053.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.guided.26, whole genome shotgun sequence	488..1327	Sulfamethoxazole	U12338	sul3	100	792/792	ABOEUR010000054.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.guided.28, whole genome shotgun sequence	4070..4861	Sulfamethoxazole	AJ459418	tet(A)	99.92	1275/1275	ABOEUR010000021.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.denovo.24, whole genome shotgun sequence	5083..6357	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1275/1275	ABOEUR010000052.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.guided.25, whole genome shotgun sequence	7216..8490	Doxycycline, Tetracycline	AF534183	dfrA12	100	498/498	ABOEUR010000036.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.denovo.46, whole genome shotgun sequence	614..1111	Trimethoprim	AM040708	dfrA12	100	498/498	ABOEUR010000058.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.guided.43, whole genome shotgun sequence	47..544	Trimethoprim	AM040708																																																																																																																																																																																																																																																						gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABOEUR010000026.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.denovo.32, whole genome shotgun sequence	1939..2067	enterobacteriales	Col(pHAD28)	92.5	120 / 131	ABOEUR010000032.1 Salmonella enterica strain PNUSAS393923 SAMN37905031-rid19915413.denovo.41, whole genome shotgun sequence	1958..2077																																																avrA	ABOEUR010000002.1	144730..145599	99.31	870	0						
GCA_032895585.1_PDT001948858.1_genomic.fna	Salmonella_enterica	0.5198	682.665 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOEUS010000002.1 Salmonella enterica strain PNUSAS393924 SAMN37905029-rid19915393.denovo.02, whole genome shotgun sequence	510587..511024	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOEUS010000024.1 Salmonella enterica strain PNUSAS393924 SAMN37905029-rid19915393.guided.14, whole genome shotgun sequence	29315..29752	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOEUS010000012.1 Salmonella enterica strain PNUSAS393924 SAMN37905029-rid19915393.denovo.13, whole genome shotgun sequence	34957..35490																																																						avrA	ABOEUS010000003.1	573387..574255	99.425	870	0						
GCA_032895605.1_PDT001948844.1_genomic.fna	Salmonella_enterica	0.5198	509.019 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEUT010000001.1 Salmonella enterica strain PNUSAS393900 SAMN37904922-rid19915253.denovo.01, whole genome shotgun sequence	628627..629064	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEUT010000022.1 Salmonella enterica strain PNUSAS393900 SAMN37904922-rid19915253.guided.14, whole genome shotgun sequence	27846..28283	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOEUT010000017.1 Salmonella enterica strain PNUSAS393900 SAMN37904922-rid19915253.denovo.20, whole genome shotgun sequence	3134..3264	enterobacteriales	IncFII(p96A)	100	534 / 534	ABOEUT010000012.1 Salmonella enterica strain PNUSAS393900 SAMN37904922-rid19915253.denovo.13, whole genome shotgun sequence	34944..35477		enterobacteriales	IncX1	98.66	374 / 374	ABOEUT010000014.1 Salmonella enterica strain PNUSAS393900 SAMN37904922-rid19915253.denovo.16, whole genome shotgun sequence	6956..7329																																									avrA	ABOEUT010000003.1	503502..504372	99.196	871	0						
GCA_032895625.1_PDT001948843.1_genomic.fna	Salmonella_enterica	0.5209	345.709 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncN	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEUU010000012.1 Salmonella enterica strain PNUSAS393902 SAMN37904910-rid19915243.denovo.12, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEUU010000039.1 Salmonella enterica strain PNUSAS393902 SAMN37904910-rid19915243.guided.26, whole genome shotgun sequence	12523..12960	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOEUU010000018.1 Salmonella enterica strain PNUSAS393902 SAMN37904910-rid19915243.denovo.18, whole genome shotgun sequence	34957..35490	enterobacteriales	IncN	95.33	514 / 514	ABOEUU010000023.1 Salmonella enterica strain PNUSAS393902 SAMN37904910-rid19915243.denovo.24, whole genome shotgun sequence	29569..30082																																																avrA	ABOEUU010000006.1	187683..188549	98.966	870	0						
GCA_032895645.1_PDT001948841.1_genomic.fna	Salmonella_enterica	0.5196	466.52 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEUV010000001.1 Salmonella enterica strain PNUSAS393883 SAMN37904903-rid19915223.denovo.01, whole genome shotgun sequence	287377..287814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEUV010000024.1 Salmonella enterica strain PNUSAS393883 SAMN37904903-rid19915223.guided.18, whole genome shotgun sequence	2528..2965	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABOEUV010000017.1 Salmonella enterica strain PNUSAS393883 SAMN37904903-rid19915223.denovo.20, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABOEUV010000010.1 Salmonella enterica strain PNUSAS393883 SAMN37904903-rid19915223.denovo.10, whole genome shotgun sequence	60050..60583		enterobacteriales	IncX1	98.4	374 / 374	ABOEUV010000014.1 Salmonella enterica strain PNUSAS393883 SAMN37904903-rid19915223.denovo.15, whole genome shotgun sequence	6956..7329																																									avrA	ABOEUV010000008.1	150695..151565	99.196	871	0						
GCA_032895665.1_PDT001948840.1_genomic.fna	Salmonella_enterica	0.5211	490.178 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEUW010000001.1 Salmonella enterica strain PNUSAS393899 SAMN37904923-rid19915213.denovo.01, whole genome shotgun sequence	774554..774991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEUW010000020.1 Salmonella enterica strain PNUSAS393899 SAMN37904923-rid19915213.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEUW010000012.1 Salmonella enterica strain PNUSAS393899 SAMN37904923-rid19915213.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOEUW010000012.1 Salmonella enterica strain PNUSAS393899 SAMN37904923-rid19915213.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABOEUW010000002.1	585348..586217	99.54	870	0						
GCA_032895685.1_PDT001948839.1_genomic.fna	Salmonella_enterica	0.5172	353.549 KB	5	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(Yp),IncFII(pMET)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABOEUX010000002.1 Salmonella enterica strain PNUSAS393895 SAMN37904909-rid19915203.denovo.02, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABOEUX010000049.1 Salmonella enterica strain PNUSAS393895 SAMN37904909-rid19915203.guided.31, whole genome shotgun sequence	4407..4844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABOEUX010000008.1 Salmonella enterica strain PNUSAS393895 SAMN37904909-rid19915203.denovo.08, whole genome shotgun sequence	157662..158304	enterobacteriales	IncFII(Yp)	99.57	230 / 230	ABOEUX010000020.1 Salmonella enterica strain PNUSAS393895 SAMN37904909-rid19915203.denovo.20, whole genome shotgun sequence	3536..3765		enterobacteriales	IncFII(pMET)	90.92	584 / 577	ABOEUX010000028.1 Salmonella enterica strain PNUSAS393895 SAMN37904909-rid19915203.denovo.28, whole genome shotgun sequence	21876..22458																																																				
GCA_032895705.1_PDT001948837.1_genomic.fna	Salmonella_enterica	0.5212	259.019 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEUY010000002.1 Salmonella enterica strain PNUSAS393905 SAMN37904921-rid19915183.denovo.02, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	392/438	ABOEUY010000044.1 Salmonella enterica strain PNUSAS393905 SAMN37904921-rid19915183.guided.35, whole genome shotgun sequence	1..392	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEUY010000007.1	175009..175877	99.77	870	0						
GCA_032895725.1_PDT001948836.1_genomic.fna	Salmonella_enterica	0.5223	714.483 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEUZ010000001.1 Salmonella enterica strain PNUSAS393898 SAMN37904924-rid19915173.denovo.01, whole genome shotgun sequence	1374739..1375176	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEUZ010000017.1 Salmonella enterica strain PNUSAS393898 SAMN37904924-rid19915173.denovo.20, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOEUZ010000017.1 Salmonella enterica strain PNUSAS393898 SAMN37904924-rid19915173.denovo.20, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOEUZ010000017.1 Salmonella enterica strain PNUSAS393898 SAMN37904924-rid19915173.denovo.20, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOEUZ010000017.1 Salmonella enterica strain PNUSAS393898 SAMN37904924-rid19915173.denovo.20, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOEUZ010000017.1 Salmonella enterica strain PNUSAS393898 SAMN37904924-rid19915173.denovo.20, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOEUZ010000027.1 Salmonella enterica strain PNUSAS393898 SAMN37904924-rid19915173.guided.16, whole genome shotgun sequence	12876..13313	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEUZ010000029.1 Salmonella enterica strain PNUSAS393898 SAMN37904924-rid19915173.guided.21, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOEUZ010000029.1 Salmonella enterica strain PNUSAS393898 SAMN37904924-rid19915173.guided.21, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOEUZ010000029.1 Salmonella enterica strain PNUSAS393898 SAMN37904924-rid19915173.guided.21, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOEUZ010000029.1 Salmonella enterica strain PNUSAS393898 SAMN37904924-rid19915173.guided.21, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOEUZ010000029.1 Salmonella enterica strain PNUSAS393898 SAMN37904924-rid19915173.guided.21, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOEUZ010000018.1 Salmonella enterica strain PNUSAS393898 SAMN37904924-rid19915173.denovo.23, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOEUZ010000030.1 Salmonella enterica strain PNUSAS393898 SAMN37904924-rid19915173.guided.22, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABOEUZ010000022.1 Salmonella enterica strain PNUSAS393898 SAMN37904924-rid19915173.denovo.27, whole genome shotgun sequence	805..997																																																						avrA	ABOEUZ010000003.1	573274..574143	99.655	870	0						
GCA_032895745.1_PDT001948832.1_genomic.fna	Salmonella_enterica	0.521	394.729 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEVB010000001.1 Salmonella enterica strain PNUSAS393887 SAMN37904916-rid19915133.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEVB010000028.1 Salmonella enterica strain PNUSAS393887 SAMN37904916-rid19915133.guided.19, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEVB010000002.1	145182..146051	99.31	870	0						
GCA_032895765.1_PDT001948833.1_genomic.fna	Salmonella_enterica	0.5219	714.415 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	2	gyrA_p.D87N,parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEVA010000001.1 Salmonella enterica strain PNUSAS393890 SAMN37904920-rid19915143.denovo.01, whole genome shotgun sequence	851694..852131	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEVA010000017.1 Salmonella enterica strain PNUSAS393890 SAMN37904920-rid19915143.denovo.20, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOEVA010000017.1 Salmonella enterica strain PNUSAS393890 SAMN37904920-rid19915143.denovo.20, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOEVA010000017.1 Salmonella enterica strain PNUSAS393890 SAMN37904920-rid19915143.denovo.20, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOEVA010000017.1 Salmonella enterica strain PNUSAS393890 SAMN37904920-rid19915143.denovo.20, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOEVA010000017.1 Salmonella enterica strain PNUSAS393890 SAMN37904920-rid19915143.denovo.20, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOEVA010000026.1 Salmonella enterica strain PNUSAS393890 SAMN37904920-rid19915143.guided.14, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEVA010000029.1 Salmonella enterica strain PNUSAS393890 SAMN37904920-rid19915143.guided.23, whole genome shotgun sequence	1249..2085	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOEVA010000029.1 Salmonella enterica strain PNUSAS393890 SAMN37904920-rid19915143.guided.23, whole genome shotgun sequence	447..1249	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOEVA010000029.1 Salmonella enterica strain PNUSAS393890 SAMN37904920-rid19915143.guided.23, whole genome shotgun sequence	446..1249	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOEVA010000029.1 Salmonella enterica strain PNUSAS393890 SAMN37904920-rid19915143.guided.23, whole genome shotgun sequence	446..1249	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOEVA010000029.1 Salmonella enterica strain PNUSAS393890 SAMN37904920-rid19915143.guided.23, whole genome shotgun sequence	446..1249	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOEVA010000018.1 Salmonella enterica strain PNUSAS393890 SAMN37904920-rid19915143.denovo.22, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOEVA010000028.1 Salmonella enterica strain PNUSAS393890 SAMN37904920-rid19915143.guided.21, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	ColpVC	100	193 / 193	ABOEVA010000021.1 Salmonella enterica strain PNUSAS393890 SAMN37904920-rid19915143.denovo.26, whole genome shotgun sequence	192..384																																																						avrA	ABOEVA010000003.1	573206..574075	99.655	870	0						
GCA_032895785.1_PDT001948831.1_genomic.fna	Salmonella_enterica	0.5216	329.173 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEVC010000003.1 Salmonella enterica strain PNUSAS393903 SAMN37904911-rid19915123.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEVC010000043.1 Salmonella enterica strain PNUSAS393903 SAMN37904911-rid19915123.guided.26, whole genome shotgun sequence	27439..27876	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOEVC010000016.1 Salmonella enterica strain PNUSAS393903 SAMN37904911-rid19915123.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOEVC010000016.1 Salmonella enterica strain PNUSAS393903 SAMN37904911-rid19915123.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABOEVC010000006.1	155216..156084	100	869	0						
GCA_032895795.1_PDT001948828.1_genomic.fna	Salmonella_enterica	0.5208	315.827 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA1,aadA2,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEVE010000001.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.denovo.01, whole genome shotgun sequence	592791..593228	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOEVE010000029.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.denovo.31, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOEVE010000029.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.denovo.31, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOEVE010000040.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.denovo.48, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEVE010000040.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.denovo.48, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOEVE010000051.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.guided.18, whole genome shotgun sequence	34348..34785	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOEVE010000055.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.guided.37, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOEVE010000057.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.guided.42, whole genome shotgun sequence	622..1413	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	837/837	ABOEVE010000059.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.guided.53, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEVE010000059.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.guided.53, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOEVE010000043.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.denovo.51, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOEVE010000060.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.guided.54, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOEVE010000029.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.denovo.31, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOEVE010000037.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.denovo.44, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOEVE010000055.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.guided.37, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOEVE010000057.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.guided.42, whole genome shotgun sequence	1675..2934	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOEVE010000058.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.guided.47, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEVE010000061.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.guided.56, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOEVE010000062.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.guided.57, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	100	816/816	ABOEVE010000063.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.guided.58, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOEVE010000028.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.denovo.30, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOEVE010000029.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.denovo.31, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOEVE010000054.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.guided.34, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOEVE010000055.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.guided.37, whole genome shotgun sequence	4527..6446	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABOEVE010000029.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.denovo.31, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABOEVE010000056.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.guided.38, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																						enterobacteriales	Col156	94.81	154 / 154	ABOEVE010000033.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.denovo.39, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABOEVE010000039.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.denovo.46, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABOEVE010000044.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.denovo.52, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOEVE010000026.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.denovo.28, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOEVE010000021.1 Salmonella enterica strain PNUSAS393896 SAMN37904926-rid19915093.denovo.22, whole genome shotgun sequence	55745..56241																											avrA	ABOEVE010000002.1	508765..509634	99.885	870	0						
GCA_032895825.1_PDT001948830.1_genomic.fna	Salmonella_enterica	0.5204	394.495 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEVD010000001.1 Salmonella enterica strain PNUSAS393893 SAMN37904917-rid19915113.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEVD010000027.1 Salmonella enterica strain PNUSAS393893 SAMN37904917-rid19915113.guided.12, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEVD010000002.1	145182..146051	99.31	870	0						
GCA_032895845.1_PDT001948825.1_genomic.fna	Salmonella_enterica	0.5206	282.342 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA1,aadA2,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,cmlA1,cmlA1,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEVG010000001.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOEVG010000030.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.denovo.32, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOEVG010000030.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.denovo.32, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOEVG010000047.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.denovo.56, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEVG010000047.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.denovo.56, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOEVG010000054.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.guided.12, whole genome shotgun sequence	42353..42790	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOEVG010000058.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.guided.38, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOEVG010000060.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.guided.48, whole genome shotgun sequence	241..1032	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	837/837	ABOEVG010000062.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.guided.55, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEVG010000062.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.guided.55, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOEVG010000045.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.denovo.53, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOEVG010000061.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.guided.52, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOEVG010000030.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.denovo.32, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOEVG010000058.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.guided.38, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOEVG010000060.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.guided.48, whole genome shotgun sequence	1294..2553	Chloramphenicol	M64556	sul2	100	816/816	ABOEVG010000063.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.guided.58, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOEVG010000064.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.guided.59, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOEVG010000029.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.denovo.31, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOEVG010000030.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.denovo.32, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOEVG010000057.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.guided.35, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOEVG010000058.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.guided.38, whole genome shotgun sequence	4527..6446	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABOEVG010000030.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.denovo.32, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABOEVG010000059.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.guided.42, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																											enterobacteriales	Col156	94.81	154 / 154	ABOEVG010000035.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.denovo.40, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABOEVG010000042.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.denovo.49, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABOEVG010000046.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.denovo.54, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOEVG010000026.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.denovo.27, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOEVG010000021.1 Salmonella enterica strain PNUSAS393888 SAMN37904915-rid19915063.denovo.22, whole genome shotgun sequence	55745..56241																											avrA	ABOEVG010000002.1	508765..509634	99.885	870	0						
GCA_032895865.1_PDT001948826.1_genomic.fna	Salmonella_enterica	0.5215	109.439 KB	12	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEVF010000031.1 Salmonella enterica strain PNUSAS393901 SAMN37904927-rid19915073.denovo.33, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOEVF010000066.1 Salmonella enterica strain PNUSAS393901 SAMN37904927-rid19915073.guided.31, whole genome shotgun sequence	10144..10581	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABOEVF010000037.1 Salmonella enterica strain PNUSAS393901 SAMN37904927-rid19915073.denovo.39, whole genome shotgun sequence	26921..27180																																																																	
GCA_032895925.1_PDT001948823.1_genomic.fna	Salmonella_enterica	0.5196	508.312 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEVH010000001.1 Salmonella enterica strain PNUSAS393885 SAMN37904905-rid19915043.denovo.01, whole genome shotgun sequence	655798..656235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEVH010000024.1 Salmonella enterica strain PNUSAS393885 SAMN37904905-rid19915043.guided.13, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABOEVH010000018.1 Salmonella enterica strain PNUSAS393885 SAMN37904905-rid19915043.denovo.21, whole genome shotgun sequence	3175..3285	enterobacteriales	IncFII(p96A)	100	534 / 534	ABOEVH010000011.1 Salmonella enterica strain PNUSAS393885 SAMN37904905-rid19915043.denovo.12, whole genome shotgun sequence	6118..6651		enterobacteriales	IncX1	98.4	374 / 374	ABOEVH010000014.1 Salmonella enterica strain PNUSAS393885 SAMN37904905-rid19915043.denovo.16, whole genome shotgun sequence	6956..7329																																									avrA	ABOEVH010000002.1	504679..505549	99.196	871	0						
GCA_032895945.1_PDT001948795.1_genomic.fna	Salmonella_enterica	0.5209	476.57 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEVK010000001.1 Salmonella enterica strain PNUSAS393840 SAMN37904382-rid19914763.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEVK010000027.1 Salmonella enterica strain PNUSAS393840 SAMN37904382-rid19914763.guided.17, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEVK010000014.1 Salmonella enterica strain PNUSAS393840 SAMN37904382-rid19914763.denovo.15, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOEVK010000019.1 Salmonella enterica strain PNUSAS393840 SAMN37904382-rid19914763.denovo.22, whole genome shotgun sequence	3409..3670																																																avrA	ABOEVK010000002.1	505767..506636	99.54	870	0						
GCA_032895965.1_PDT001948792.1_genomic.fna	Salmonella_enterica	0.5191	737.866 KB	3	aroC_11,dnaN_10,hemD_25,hisD_42,purE_337,sucA_13,thrA_4	1954	4:e,h:e,n,x	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),ColpVC,ColpVC,IncI1-I(Alpha),IncI2(Delta)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_42	purE	100	100	purE_337	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEVM010000001.1 Salmonella enterica strain PNUSAS393821 SAMN37904157-rid19914733.denovo.01, whole genome shotgun sequence	642839..643276	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEVM010000032.1 Salmonella enterica strain PNUSAS393821 SAMN37904157-rid19914733.guided.14, whole genome shotgun sequence	10980..11417	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOEVM010000019.1 Salmonella enterica strain PNUSAS393821 SAMN37904157-rid19914733.denovo.22, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOEVM010000034.1 Salmonella enterica strain PNUSAS393821 SAMN37904157-rid19914733.guided.23, whole genome shotgun sequence	946..1590	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOEVM010000019.1 Salmonella enterica strain PNUSAS393821 SAMN37904157-rid19914733.denovo.22, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOEVM010000034.1 Salmonella enterica strain PNUSAS393821 SAMN37904157-rid19914733.guided.23, whole genome shotgun sequence	290..420		enterobacteriales	ColpVC	100	193 / 193	ABOEVM010000021.1 Salmonella enterica strain PNUSAS393821 SAMN37904157-rid19914733.denovo.25, whole genome shotgun sequence	192..384		enterobacteriales	ColpVC	98.96	193 / 193	ABOEVM010000022.1 Salmonella enterica strain PNUSAS393821 SAMN37904157-rid19914733.denovo.26, whole genome shotgun sequence	192..384		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEVM010000010.1 Salmonella enterica strain PNUSAS393821 SAMN37904157-rid19914733.denovo.10, whole genome shotgun sequence	73265..73406		enterobacteriales	IncI2(Delta)	98.42	316 / 316	ABOEVM010000012.1 Salmonella enterica strain PNUSAS393821 SAMN37904157-rid19914733.denovo.12, whole genome shotgun sequence	27476..27791																				avrA	ABOEVM010000004.1	569971..570840	99.54	870	0						
GCA_032895985.1_PDT001948790.1_genomic.fna	Salmonella_enterica	0.5205	378.881 KB	5	aroC_13,dnaN_181,hemD_49,hisD_13,purE_183,sucA_71,thrA_4	617	28:i:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440II	aroC	100	100	aroC_13	dnaN	100	100	dnaN_181	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_183	sucA	100	100	sucA_71	thrA	100	100	thrA_4	28	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	Cotham		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEVO010000009.1 Salmonella enterica strain PNUSAS393822 SAMN37904156-rid19914713.denovo.09, whole genome shotgun sequence	149488..149925	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOEVO010000042.1 Salmonella enterica strain PNUSAS393822 SAMN37904156-rid19914713.guided.27, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440II	97.16	282 / 282	ABOEVO010000025.1 Salmonella enterica strain PNUSAS393822 SAMN37904156-rid19914713.denovo.28, whole genome shotgun sequence	5136..5417																																																						avrA	ABOEVO010000001.1	552130..552999	99.425	870	0						
GCA_032896005.1_PDT001948793.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEVL010000001.1 Salmonella enterica strain PNUSAS393820 SAMN37904158-rid19914743.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEVL010000028.1 Salmonella enterica strain PNUSAS393820 SAMN37904158-rid19914743.guided.22, whole genome shotgun sequence	3823..4260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEVL010000018.1 Salmonella enterica strain PNUSAS393820 SAMN37904158-rid19914743.denovo.18, whole genome shotgun sequence	6846..7488	enterobacteriales	IncFII(S)	100	262 / 262	ABOEVL010000020.1 Salmonella enterica strain PNUSAS393820 SAMN37904158-rid19914743.denovo.21, whole genome shotgun sequence	3407..3668																																																avrA	ABOEVL010000002.1	553635..554504	99.54	870	0						
GCA_032896025.1_PDT001948791.1_genomic.fna	Salmonella_enterica	0.5208	504.555 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEVN010000001.1 Salmonella enterica strain PNUSAS393823 SAMN37904159-rid19914723.denovo.01, whole genome shotgun sequence	477374..477811	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEVN010000026.1 Salmonella enterica strain PNUSAS393823 SAMN37904159-rid19914723.guided.15, whole genome shotgun sequence	20593..21030	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEVN010000002.1	551495..552364	99.195	870	0						
GCA_032896905.1_PDT001776786.1_genomic.fna	Salmonella_enterica	0.5203	61.75 KB	22	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOEXG010000018.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322636 SAMN35714076-rid18361923.denovo.018, whole genome shotgun sequence	44307..44744	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOEXG010000161.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322636 SAMN35714076-rid18361923.guided.069, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOEXG010000127.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322636 SAMN35714076-rid18361923.denovo.130, whole genome shotgun sequence	2420..2550	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOEXG010000142.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322636 SAMN35714076-rid18361923.denovo.145, whole genome shotgun sequence	462..592		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOEXG010000102.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322636 SAMN35714076-rid18361923.denovo.105, whole genome shotgun sequence	6218..6751																																									avrA	ABOEXG010000014.1	83997..84866	99.54	870	0						
GCA_032896945.1_PDT001776784.1_genomic.fna	Salmonella_enterica	0.522	83.221 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEXJ010000007.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322643 SAMN35714117-rid18361913.denovo.007, whole genome shotgun sequence	83632..84069	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOEXJ010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322643 SAMN35714117-rid18361913.denovo.063, whole genome shotgun sequence	22716..23507	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOEXJ010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322643 SAMN35714117-rid18361913.denovo.063, whole genome shotgun sequence	22716..23507	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOEXJ010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322643 SAMN35714117-rid18361913.guided.037, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOEXJ010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322643 SAMN35714117-rid18361913.guided.086, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOEXJ010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322643 SAMN35714117-rid18361913.guided.086, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABOEXJ010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322643 SAMN35714117-rid18361913.denovo.101, whole genome shotgun sequence	938..1813	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOEXJ010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322643 SAMN35714117-rid18361913.guided.100, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABOEXJ010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322643 SAMN35714117-rid18361913.denovo.063, whole genome shotgun sequence	21372..22211	Sulfamethoxazole	U12338	sul1	100	840/840	ABOEXJ010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322643 SAMN35714117-rid18361913.guided.086, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOEXJ010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322643 SAMN35714117-rid18361913.denovo.063, whole genome shotgun sequence	7656..8855	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOEXJ010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322643 SAMN35714117-rid18361913.guided.096, whole genome shotgun sequence	1903..3102	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOEXJ010000030.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322643 SAMN35714117-rid18361913.denovo.030, whole genome shotgun sequence	51953..52512																																																						avrA	ABOEXJ010000011.1	81701..82570	99.655	870	0						
GCA_032896965.1_PDT001776783.1_genomic.fna	Salmonella_enterica	0.5214	90.548 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEXK010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322640 SAMN35714101-rid18363483.denovo.001, whole genome shotgun sequence	211773..212210	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOEXK010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322640 SAMN35714101-rid18363483.denovo.045, whole genome shotgun sequence	1344..2135	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOEXK010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322640 SAMN35714101-rid18363483.denovo.045, whole genome shotgun sequence	1344..2135	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOEXK010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322640 SAMN35714101-rid18363483.guided.063, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOEXK010000138.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322640 SAMN35714101-rid18363483.guided.083, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOEXK010000138.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322640 SAMN35714101-rid18363483.guided.083, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOEXK010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322640 SAMN35714101-rid18363483.denovo.045, whole genome shotgun sequence	2640..3479	Sulfamethoxazole	U12338	sul1	100	840/840	ABOEXK010000138.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322640 SAMN35714101-rid18363483.guided.083, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOEXK010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322640 SAMN35714101-rid18363483.denovo.045, whole genome shotgun sequence	15996..17195	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOEXK010000137.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322640 SAMN35714101-rid18363483.guided.077, whole genome shotgun sequence	7861..9060	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOEXK010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322640 SAMN35714101-rid18363483.denovo.055, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX1	98.93	374 / 374	ABOEXK010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322640 SAMN35714101-rid18363483.denovo.130, whole genome shotgun sequence	207..580																																																avrA	ABOEXK010000008.1	124261..125130	99.655	870	0						
GCA_032896985.1_PDT001776773.1_genomic.fna	Salmonella_enterica	0.5226	96.654 KB	15	aroC_222,dnaN_105,hemD_46,hisD_123,purE_225,sucA_115,thrA_115	1593	-:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),ColRNAI,IncFII(p96A)	aroC	100	100	aroC_222	dnaN	100	100	dnaN_105	hemD	100	100	hemD_46	hisD	100	100	hisD_123	purE	100	100	purE_225	sucA	100	100	sucA_115	thrA	100	100	thrA_115	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEXI010000001.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322642 SAMN35714097-rid18363463.denovo.01, whole genome shotgun sequence	204371..204808	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEXI010000098.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322642 SAMN35714097-rid18363463.guided.42, whole genome shotgun sequence	15949..16386	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOEXI010000076.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322642 SAMN35714097-rid18363463.denovo.79, whole genome shotgun sequence	2209..2339	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOEXI010000078.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322642 SAMN35714097-rid18363463.denovo.81, whole genome shotgun sequence	186..316		enterobacteriales	ColRNAI	90.08	131 / 130	ABOEXI010000075.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322642 SAMN35714097-rid18363463.denovo.78, whole genome shotgun sequence	3981..4111		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOEXI010000072.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322642 SAMN35714097-rid18363463.denovo.75, whole genome shotgun sequence	3972..4505																																		avrA	ABOEXI010000011.1	61558..62427	99.425	870	0						
GCA_032897005.1_PDT001776770.1_genomic.fna	Salmonella_enterica	0.521	88.367 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		4	Col(pHAD28),ColpVC,IncC,IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEXL010000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322637 SAMN35714078-rid18364913.denovo.004, whole genome shotgun sequence	133825..134262	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEXL010000112.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322637 SAMN35714078-rid18364913.guided.033, whole genome shotgun sequence	24886..25323	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABOEXL010000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322637 SAMN35714078-rid18364913.denovo.026, whole genome shotgun sequence	15599..16414	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEXL010000115.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322637 SAMN35714078-rid18364913.guided.072, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOEXL010000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322637 SAMN35714078-rid18364913.denovo.026, whole genome shotgun sequence	18591..19790	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOEXL010000115.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322637 SAMN35714078-rid18364913.guided.072, whole genome shotgun sequence	4544..5743	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOEXL010000085.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322637 SAMN35714078-rid18364913.denovo.089, whole genome shotgun sequence	371..501	enterobacteriales	ColpVC	98.96	193 / 193	ABOEXL010000092.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322637 SAMN35714078-rid18364913.denovo.096, whole genome shotgun sequence	805..997		enterobacteriales	IncC	100	417 / 417	ABOEXL010000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322637 SAMN35714078-rid18364913.denovo.026, whole genome shotgun sequence	61380..61796		enterobacteriales	IncX1	98.93	374 / 374	ABOEXL010000038.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322637 SAMN35714078-rid18364913.denovo.039, whole genome shotgun sequence	37087..37460																																		avrA	ABOEXL010000008.1	105326..106195	99.885	870	0						
GCA_032897025.1_PDT001776769.1_genomic.fna	Salmonella_enterica	0.5222	60.807 KB	24	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOEXM010000022.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322639 SAMN35714103-rid18360503.denovo.022, whole genome shotgun sequence	11439..11876	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOEXM010000146.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322639 SAMN35714103-rid18360503.guided.059, whole genome shotgun sequence	25882..26319	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOEXM010000110.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322639 SAMN35714103-rid18360503.denovo.112, whole genome shotgun sequence	557..687	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOEXM010000111.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322639 SAMN35714103-rid18360503.denovo.113, whole genome shotgun sequence	186..316		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOEXM010000113.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322639 SAMN35714103-rid18360503.denovo.115, whole genome shotgun sequence	258..399																																									avrA	ABOEXM010000013.1	83886..84754	99.655	869	0						
GCA_032897045.1_PDT001776762.1_genomic.fna	Salmonella_enterica	0.5207	60.927 KB	27	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	5	Col(pHAD28),Col440I,ColpVC,IncFII(p96A),IncI1-I(Alpha)	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEXO010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322634 SAMN35714069-rid18363423.denovo.012, whole genome shotgun sequence	80079..80516	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEXO010000164.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322634 SAMN35714069-rid18363423.guided.070, whole genome shotgun sequence	14028..14465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOEXO010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322634 SAMN35714069-rid18363423.denovo.134, whole genome shotgun sequence	1703..1833	enterobacteriales	Col440I	91.74	109 / 114	ABOEXO010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322634 SAMN35714069-rid18363423.denovo.125, whole genome shotgun sequence	2246..2354		enterobacteriales	ColpVC	98.96	193 / 193	ABOEXO010000128.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322634 SAMN35714069-rid18363423.denovo.131, whole genome shotgun sequence	519..711		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOEXO010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322634 SAMN35714069-rid18363423.denovo.073, whole genome shotgun sequence	13561..14094		enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	ABOEXO010000075.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322634 SAMN35714069-rid18363423.denovo.077, whole genome shotgun sequence	5146..5285																											avrA	ABOEXO010000023.1	26242..27111	99.655	870	0						
GCA_032897065.1_PDT001776764.1_genomic.fna	Salmonella_enterica	0.5221	99.873 KB	15	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEXN010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322635 SAMN35714072-rid18361873.denovo.01, whole genome shotgun sequence	350855..351292	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOEXN010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322635 SAMN35714072-rid18361873.denovo.51, whole genome shotgun sequence	22835..23626	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOEXN010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322635 SAMN35714072-rid18361873.denovo.51, whole genome shotgun sequence	22835..23626	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOEXN010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322635 SAMN35714072-rid18361873.denovo.90, whole genome shotgun sequence	93..908	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	X62115	aac(6')-Iaa	97.49	438/438	ABOEXN010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322635 SAMN35714072-rid18361873.guided.46, whole genome shotgun sequence	14051..14488	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOEXN010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322635 SAMN35714072-rid18361873.guided.68, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOEXN010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322635 SAMN35714072-rid18361873.guided.68, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOEXN010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322635 SAMN35714072-rid18361873.guided.88, whole genome shotgun sequence	128..943	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	X62115	sul1	100	840/840	ABOEXN010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322635 SAMN35714072-rid18361873.denovo.51, whole genome shotgun sequence	21491..22330	Sulfamethoxazole	U12338	sul1	100	840/840	ABOEXN010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322635 SAMN35714072-rid18361873.guided.68, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOEXN010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322635 SAMN35714072-rid18361873.denovo.51, whole genome shotgun sequence	7775..8974	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOEXN010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322635 SAMN35714072-rid18361873.guided.58, whole genome shotgun sequence	850..2049	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOEXN010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322635 SAMN35714072-rid18361873.denovo.35, whole genome shotgun sequence	36941..37500																																																						avrA	ABOEXN010000003.1	149828..150697	99.655	870	0						
GCA_032897085.1_PDT001776761.1_genomic.fna	Salmonella_enterica	0.5221	83.769 KB	16	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	-:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	Col(pHAD28),Col440I,IncFII(p96A),IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOEXP010000015.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322644 SAMN35714114-rid18363413.denovo.015, whole genome shotgun sequence	11330..11767	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOEXP010000124.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322644 SAMN35714114-rid18363413.guided.070, whole genome shotgun sequence	15488..15925	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOEXP010000089.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322644 SAMN35714114-rid18363413.denovo.092, whole genome shotgun sequence	2216..2346	enterobacteriales	Col440I	91.74	109 / 114	ABOEXP010000089.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322644 SAMN35714114-rid18363413.denovo.092, whole genome shotgun sequence	4263..4371		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOEXP010000074.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322644 SAMN35714114-rid18363413.denovo.076, whole genome shotgun sequence	6729..7262		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEXP010000091.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12322644 SAMN35714114-rid18363413.denovo.094, whole genome shotgun sequence	4625..4766																																		avrA	ABOEXP010000004.1	145444..146313	99.425	870	0						
GCA_032897105.1_PDT001776755.1_genomic.fna	Salmonella_enterica	0.5225	58.361 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEXS010000002.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.denovo.002, whole genome shotgun sequence	38033..38470	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOEXS010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.denovo.076, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOEXS010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.denovo.076, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOEXS010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.denovo.113, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOEXS010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.denovo.113, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOEXS010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.guided.087, whole genome shotgun sequence	3551..3988	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOEXS010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.guided.093, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOEXS010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.guided.093, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOEXS010000148.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.guided.112, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOEXS010000148.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.guided.112, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOEXS010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.denovo.120, whole genome shotgun sequence	938..1813	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOEXS010000150.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.guided.119, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABOEXS010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.denovo.076, whole genome shotgun sequence	17100..17939	Sulfamethoxazole	U12338	sul1	100	840/840	ABOEXS010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.guided.093, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOEXS010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.denovo.076, whole genome shotgun sequence	3384..4583	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOEXS010000147.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.guided.111, whole genome shotgun sequence	1755..2954	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOEXS010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322645 SAMN35714112-rid18364883.denovo.095, whole genome shotgun sequence	9108..9667																																																						avrA	ABOEXS010000046.1	39428..40297	99.655	870	0						
GCA_032897125.1_PDT001776752.1_genomic.fna	Salmonella_enterica	0.5218	93.712 KB	15	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEXR010000002.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12322638 SAMN35714102-rid18363393.denovo.02, whole genome shotgun sequence	56417..56854	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEXR010000098.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12322638 SAMN35714102-rid18363393.guided.59, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032897145.1_PDT001776748.1_genomic.fna	Salmonella_enterica	0.521	141.349 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEXT010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.denovo.01, whole genome shotgun sequence	477824..478261	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOEXT010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.denovo.37, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOEXT010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.denovo.37, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOEXT010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.denovo.64, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOEXT010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.denovo.64, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOEXT010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.guided.30, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOEXT010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.guided.52, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOEXT010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.guided.52, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOEXT010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.guided.62, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOEXT010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.guided.62, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABOEXT010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.denovo.37, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABOEXT010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.guided.52, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOEXT010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.denovo.37, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOEXT010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.guided.45, whole genome shotgun sequence	2806..4005	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOEXT010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.denovo.60, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOEXT010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.guided.67, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOEXT010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.denovo.44, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX1	98.66	374 / 374	ABOEXT010000073.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322651 SAMN35713962-rid18364863.denovo.80, whole genome shotgun sequence	76..449																																																avrA	ABOEXT010000004.1	149828..150697	99.655	870	0						
GCA_032897165.1_PDT001776750.1_genomic.fna	Salmonella_enterica	0.5224	82.98 KB	21	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	4	aac(6')-Iaa,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	2	Col440I,IncQ1,IncQ1	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEXQ010000010.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322641 SAMN35714099-rid18364873.denovo.010, whole genome shotgun sequence	52229..52666	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	671/804	ABOEXQ010000084.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322641 SAMN35714099-rid18364873.denovo.088, whole genome shotgun sequence	8803..9473	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOEXQ010000135.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322641 SAMN35714099-rid18364873.guided.078, whole genome shotgun sequence	7463..7900	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	695/804	ABOEXQ010000136.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322641 SAMN35714099-rid18364873.guided.087, whole genome shotgun sequence	7879..8573	Streptomycin	AF321551	sul2	100	816/816	ABOEXQ010000084.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322641 SAMN35714099-rid18364873.denovo.088, whole genome shotgun sequence	85..900	Sulfamethoxazole	FN995456	sul2	100	816/816	ABOEXQ010000136.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322641 SAMN35714099-rid18364873.guided.087, whole genome shotgun sequence	7003..7818	Sulfamethoxazole	FN995456	tet(A)	99.83	1200/1200	ABOEXQ010000084.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322641 SAMN35714099-rid18364873.denovo.088, whole genome shotgun sequence	6703..7902	Doxycycline, Tetracycline	AJ517790	tet(A)	99.83	1200/1200	ABOEXQ010000136.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322641 SAMN35714099-rid18364873.guided.087, whole genome shotgun sequence	1..1200	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	ABOEXQ010000104.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322641 SAMN35714099-rid18364873.denovo.108, whole genome shotgun sequence	3345..3457	enterobacteriales	IncQ1	100	796 / 796	ABOEXQ010000084.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322641 SAMN35714099-rid18364873.denovo.088, whole genome shotgun sequence	2240..3035		enterobacteriales	IncQ1	100	796 / 796	ABOEXQ010000136.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322641 SAMN35714099-rid18364873.guided.087, whole genome shotgun sequence	4868..5663																																									avrA	ABOEXQ010000012.1	61527..62396	98.966	870	0						
GCA_032897185.1_PDT001776747.1_genomic.fna	Salmonella_enterica	0.5229	77.227 KB	21	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEXU010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322656 SAMN35714019-rid18361823.denovo.003, whole genome shotgun sequence	13136..13573	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOEXU010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322656 SAMN35714019-rid18361823.denovo.041, whole genome shotgun sequence	19401..20192	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOEXU010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322656 SAMN35714019-rid18361823.denovo.041, whole genome shotgun sequence	19401..20192	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOEXU010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322656 SAMN35714019-rid18361823.denovo.106, whole genome shotgun sequence	720..1745	Hygromycin	V01499	aac(6')-Iaa	97.49	438/438	ABOEXU010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322656 SAMN35714019-rid18361823.guided.066, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOEXU010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322656 SAMN35714019-rid18361823.guided.068, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOEXU010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322656 SAMN35714019-rid18361823.guided.068, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOEXU010000132.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322656 SAMN35714019-rid18361823.guided.105, whole genome shotgun sequence	761..1786	Hygromycin	V01499	floR	98.19	1214/1215	ABOEXU010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322656 SAMN35714019-rid18361823.denovo.102, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEXU010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322656 SAMN35714019-rid18361823.guided.101, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOEXU010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322656 SAMN35714019-rid18361823.denovo.041, whole genome shotgun sequence	20697..21536	Sulfamethoxazole	U12338	sul1	100	840/840	ABOEXU010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322656 SAMN35714019-rid18361823.guided.068, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOEXU010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322656 SAMN35714019-rid18361823.denovo.041, whole genome shotgun sequence	34053..35252	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOEXU010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322656 SAMN35714019-rid18361823.guided.068, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOEXU010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322656 SAMN35714019-rid18361823.denovo.041, whole genome shotgun sequence	2164..2723																																																						avrA	ABOEXU010000010.1	105149..106018	99.655	870	0						
GCA_032897205.1_PDT001776746.1_genomic.fna	Salmonella_enterica	0.5206	79.001 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFII(pSE11),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEXV010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322650 SAMN35713959-rid18365853.denovo.012, whole genome shotgun sequence	84911..85348	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEXV010000155.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322650 SAMN35713959-rid18365853.guided.053, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABOEXV010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322650 SAMN35713959-rid18365853.denovo.073, whole genome shotgun sequence	4412..4671	enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOEXV010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322650 SAMN35713959-rid18365853.denovo.099, whole genome shotgun sequence	5028..5169		enterobacteriales	IncX1	100	373 / 373	ABOEXV010000082.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322650 SAMN35713959-rid18365853.denovo.085, whole genome shotgun sequence	2153..2525																																									avrA	ABOEXV010000008.1	39484..40353	99.655	870	0						
GCA_032897225.1_PDT001776744.1_genomic.fna	Salmonella_enterica	0.5188	119.902 KB	13	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	-:f,g,s:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,floR,floR,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	1	IncC	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	-	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEXW010000004.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322654 SAMN35713988-rid18361813.denovo.04, whole genome shotgun sequence	62415..62852	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEXW010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322654 SAMN35713988-rid18361813.denovo.21, whole genome shotgun sequence	79730..80566	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEXW010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322654 SAMN35713988-rid18361813.denovo.21, whole genome shotgun sequence	78927..79730	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOEXW010000087.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322654 SAMN35713988-rid18361813.guided.31, whole genome shotgun sequence	44275..44712	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEXW010000089.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322654 SAMN35713988-rid18361813.guided.44, whole genome shotgun sequence	27334..28170	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOEXW010000089.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322654 SAMN35713988-rid18361813.guided.44, whole genome shotgun sequence	26531..27334	Streptomycin	AF321551	fosA7	97.16	423/423	ABOEXW010000006.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322654 SAMN35713988-rid18361813.denovo.06, whole genome shotgun sequence	18015..18437	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOEXW010000090.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322654 SAMN35713988-rid18361813.guided.55, whole genome shotgun sequence	16609..17031	Fosfomycin	LAPJ01000014	floR	98.19	1214/1215	ABOEXW010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322654 SAMN35713988-rid18361813.denovo.21, whole genome shotgun sequence	83702..84915	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEXW010000092.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322654 SAMN35713988-rid18361813.guided.78, whole genome shotgun sequence	357..1570	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOEXW010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322654 SAMN35713988-rid18361813.denovo.21, whole genome shotgun sequence	78051..78866	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOEXW010000089.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322654 SAMN35713988-rid18361813.guided.44, whole genome shotgun sequence	25655..26470	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOEXW010000021.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322654 SAMN35713988-rid18361813.denovo.21, whole genome shotgun sequence	81827..83101	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEXW010000089.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322654 SAMN35713988-rid18361813.guided.44, whole genome shotgun sequence	29431..30705	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncC	100	417 / 417	ABOEXW010000037.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322654 SAMN35713988-rid18361813.denovo.39, whole genome shotgun sequence	15641..16057																																																						avrA	ABOEXW010000017.1	95991..96860	99.195	870	0						
GCA_032897245.1_PDT001776742.1_genomic.fna	Salmonella_enterica	0.518	68.53 KB	25	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aph(6)-Id	100	837/837	ABOEXX010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322648 SAMN35713965-rid18363373.denovo.055, whole genome shotgun sequence	2261..3097	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOEXX010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322648 SAMN35713965-rid18363373.denovo.055, whole genome shotgun sequence	1459..2261	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOEXX010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322648 SAMN35713965-rid18363373.denovo.055, whole genome shotgun sequence	1458..2261	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOEXX010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322648 SAMN35713965-rid18363373.denovo.055, whole genome shotgun sequence	1458..2261	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOEXX010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322648 SAMN35713965-rid18363373.denovo.055, whole genome shotgun sequence	1458..2261	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABOEXX010000079.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322648 SAMN35713965-rid18363373.denovo.082, whole genome shotgun sequence	1025..1462	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOEXX010000166.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322648 SAMN35713965-rid18363373.guided.054, whole genome shotgun sequence	2302..3138	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOEXX010000166.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322648 SAMN35713965-rid18363373.guided.054, whole genome shotgun sequence	1500..2302	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOEXX010000166.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322648 SAMN35713965-rid18363373.guided.054, whole genome shotgun sequence	1499..2302	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOEXX010000166.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322648 SAMN35713965-rid18363373.guided.054, whole genome shotgun sequence	1499..2302	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOEXX010000166.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322648 SAMN35713965-rid18363373.guided.054, whole genome shotgun sequence	1499..2302	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABOEXX010000168.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322648 SAMN35713965-rid18363373.guided.081, whole genome shotgun sequence	15497..15934	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOEXX010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322648 SAMN35713965-rid18363373.denovo.052, whole genome shotgun sequence	28959..29285	enterobacteriales	IncHI2A	99.52	630 / 630	ABOEXX010000086.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322648 SAMN35713965-rid18363373.denovo.090, whole genome shotgun sequence	8366..8995		enterobacteriales	IncX1	100	373 / 373	ABOEXX010000123.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322648 SAMN35713965-rid18363373.denovo.127, whole genome shotgun sequence	2218..2590																																									avrA	ABOEXX010000039.1	39489..40358	99.655	870	0						
GCA_032897265.1_PDT001776729.1_genomic.fna	Salmonella_enterica	0.5229	129.985 KB	13	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEXY010000011.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322652 SAMN35713990-rid18361773.denovo.11, whole genome shotgun sequence	54958..55395	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEXY010000075.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322652 SAMN35713990-rid18361773.guided.23, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032897285.1_PDT001776728.1_genomic.fna	Salmonella_enterica	0.5236	98.284 KB	13	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEXZ010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322653 SAMN35713987-rid18364773.denovo.001, whole genome shotgun sequence	487838..488275	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEXZ010000102.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322653 SAMN35713987-rid18364773.guided.052, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032897305.1_PDT001776727.1_genomic.fna	Salmonella_enterica	0.5219	85.975 KB	18	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEYA010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322655 SAMN35713989-rid18363343.denovo.001, whole genome shotgun sequence	69653..70090	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEYA010000116.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322655 SAMN35713989-rid18363343.guided.045, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEYA010000081.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322655 SAMN35713989-rid18363343.denovo.084, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABOEYA010000083.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322655 SAMN35713989-rid18363343.denovo.086, whole genome shotgun sequence	3388..3649																																																avrA	ABOEYA010000035.1	43666..44535	99.54	870	0						
GCA_032897325.1_PDT001776724.1_genomic.fna	Salmonella_enterica	0.5233	90.214 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEYB010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322649 SAMN35713966-rid18361763.denovo.01, whole genome shotgun sequence	459313..459750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOEYB010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322649 SAMN35713966-rid18361763.guided.43, whole genome shotgun sequence	15616..16053	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEYB010000005.1	39538..40407	99.655	870	0						
GCA_032897345.1_PDT001776720.1_genomic.fna	Salmonella_enterica	0.5221	539.074 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEYD010000001.1 Salmonella enterica strain PNUSAS355077 SAMN35713839-rid18364733.denovo.01, whole genome shotgun sequence	683974..684411	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOEYD010000026.1 Salmonella enterica strain PNUSAS355077 SAMN35713839-rid18364733.guided.17, whole genome shotgun sequence	10319..10756	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEYD010000002.1	561034..561904	99.656	871	0						
GCA_032897365.1_PDT001776716.1_genomic.fna	Salmonella_enterica	0.5222	101.019 KB	14	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOEYE010000005.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322647 SAMN35713945-rid18365823.denovo.05, whole genome shotgun sequence	52328..52765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOEYE010000090.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322647 SAMN35713945-rid18365823.guided.67, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEYE010000010.1	43547..44416	99.425	870	0						
GCA_032897385.1_PDT001776719.1_genomic.fna	Salmonella_enterica	0.5222	357.768 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEYC010000001.1 Salmonella enterica strain PNUSAS355090 SAMN35713853-rid18361753.denovo.01, whole genome shotgun sequence	209079..209516	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEYC010000041.1 Salmonella enterica strain PNUSAS355090 SAMN35713853-rid18361753.guided.21, whole genome shotgun sequence	2246..2683	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEYC010000013.1	128664..129533	99.77	870	0						
GCA_032897405.1_PDT001776715.1_genomic.fna	Salmonella_enterica	0.5205	263.212 KB	6	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEYF010000002.1 Salmonella enterica strain PNUSAS355094 SAMN35713826-rid18363313.denovo.02, whole genome shotgun sequence	513038..513475	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOEYF010000038.1 Salmonella enterica strain PNUSAS355094 SAMN35713826-rid18363313.guided.25, whole genome shotgun sequence	13087..13524	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEYF010000001.1	506359..507228	99.31	870	0						
GCA_032897425.1_PDT001776711.1_genomic.fna	Salmonella_enterica	0.5229	122.705 KB	12	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEYH010000001.1 Salmonella enterica subsp. enterica serovar Give strain FSIS12322646 SAMN35713944-rid18365333.denovo.01, whole genome shotgun sequence	238930..239367	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEYH010000067.1 Salmonella enterica subsp. enterica serovar Give strain FSIS12322646 SAMN35713944-rid18365333.guided.46, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABOEYH010000057.1 Salmonella enterica subsp. enterica serovar Give strain FSIS12322646 SAMN35713944-rid18365333.denovo.59, whole genome shotgun sequence	2246..2354																																																						avrA	ABOEYH010000006.1	182144..183013	98.966	870	0						
GCA_032897445.1_PDT001776709.1_genomic.fna	Salmonella_enterica	0.5206	449.812 KB	4	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOEYI010000006.1 Salmonella enterica strain PNUSAS355081 SAMN35713842-rid18361723.denovo.06, whole genome shotgun sequence	173278..173715	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOEYI010000028.1 Salmonella enterica strain PNUSAS355081 SAMN35713842-rid18361723.guided.20, whole genome shotgun sequence	1390..1827	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOEYI010000020.1 Salmonella enterica strain PNUSAS355081 SAMN35713842-rid18361723.denovo.24, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOEYI010000029.1 Salmonella enterica strain PNUSAS355081 SAMN35713842-rid18361723.guided.22, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOEYI010000020.1 Salmonella enterica strain PNUSAS355081 SAMN35713842-rid18361723.denovo.24, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOEYI010000029.1 Salmonella enterica strain PNUSAS355081 SAMN35713842-rid18361723.guided.22, whole genome shotgun sequence	2044..2174																																																avrA	ABOEYI010000009.1	137718..138587	99.425	870	0						
GCA_032897465.1_PDT001776707.1_genomic.fna	Salmonella_enterica	0.5214	406.452 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEYG010000001.1 Salmonella enterica strain PNUSAS355099 SAMN35713849-rid18363293.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEYG010000037.1 Salmonella enterica strain PNUSAS355099 SAMN35713849-rid18363293.guided.21, whole genome shotgun sequence	3786..4223	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEYG010000015.1 Salmonella enterica strain PNUSAS355099 SAMN35713849-rid18363293.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOEYG010000015.1 Salmonella enterica strain PNUSAS355099 SAMN35713849-rid18363293.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOEYG010000010.1	175196..176065	99.54	870	0						
GCA_032897485.1_PDT001948864.1_genomic.fna	Salmonella_enterica	0.5213	699.692 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOEYJ010000001.1 Salmonella enterica strain PNUSAS393926 SAMN37905034-rid19915443.denovo.01, whole genome shotgun sequence	510605..511042	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOEYJ010000022.1 Salmonella enterica strain PNUSAS393926 SAMN37905034-rid19915443.guided.11, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEYJ010000002.1	544386..545254	99.425	870	0						
GCA_032897505.1_PDT001948857.1_genomic.fna	Salmonella_enterica	0.5209	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEYK010000001.1 Salmonella enterica strain PNUSAS393922 SAMN37905032-rid19915383.denovo.01, whole genome shotgun sequence	774451..774888	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEYK010000021.1 Salmonella enterica strain PNUSAS393922 SAMN37905032-rid19915383.guided.10, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABOEYK010000002.1	553624..554493	99.54	870	0						
GCA_032897605.1_PDT001948827.1_genomic.fna	Salmonella_enterica	0.5221	354.515 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEYO010000001.1 Salmonella enterica strain PNUSAS393897 SAMN37904925-rid19915083.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOEYO010000026.1 Salmonella enterica strain PNUSAS393897 SAMN37904925-rid19915083.guided.13, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEYO010000002.1	156481..157350	99.655	870	0						
GCA_032897625.1_PDT001948794.1_genomic.fna	Salmonella_enterica	0.5224	342.112 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEYQ010000001.1 Salmonella enterica strain PNUSAS393824 SAMN37904155-rid19914753.denovo.01, whole genome shotgun sequence	482163..482600	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEYQ010000027.1 Salmonella enterica strain PNUSAS393824 SAMN37904155-rid19914753.guided.20, whole genome shotgun sequence	10028..10465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEYQ010000007.1	125392..126261	99.77	870	0						
GCA_032897665.1_PDT001776717.1_genomic.fna	Salmonella_enterica	0.5216	282.812 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEYS010000001.1 Salmonella enterica strain PNUSAS355076 SAMN35713824-rid18363323.denovo.01, whole genome shotgun sequence	209618..210055	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEYS010000054.1 Salmonella enterica strain PNUSAS355076 SAMN35713824-rid18363323.guided.41, whole genome shotgun sequence	110..547	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEYS010000026.1 Salmonella enterica strain PNUSAS355076 SAMN35713824-rid18363323.denovo.26, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABOEYS010000022.1 Salmonella enterica strain PNUSAS355076 SAMN35713824-rid18363323.denovo.22, whole genome shotgun sequence	3704..3965																																																avrA	ABOEYS010000008.1	174740..175609	99.54	870	0						
GCA_032897705.1_PDT001776706.1_genomic.fna	Salmonella_enterica	0.5228	402.678 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEYU010000001.1 Salmonella enterica strain PNUSAS355084 SAMN35713845-rid18363283.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEYU010000029.1 Salmonella enterica strain PNUSAS355084 SAMN35713845-rid18363283.guided.18, whole genome shotgun sequence	2608..3045	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEYU010000005.1	183131..184000	98.966	870	0						
GCA_032897725.1_PDT001776703.1_genomic.fna	Salmonella_enterica	0.5226	203.759 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(3)-VIa,aac(6')-Iaa,aac(3)-VIa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOEYX010000001.1 Salmonella enterica strain PNUSAS355075 SAMN35713844-rid18364693.denovo.01, whole genome shotgun sequence	460172..460609	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOEYX010000031.1 Salmonella enterica strain PNUSAS355075 SAMN35713844-rid18364693.denovo.31, whole genome shotgun sequence	636..1538	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aac(6')-Iaa	97.49	438/438	ABOEYX010000049.1 Salmonella enterica strain PNUSAS355075 SAMN35713844-rid18364693.guided.34, whole genome shotgun sequence	6195..6632	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOEYX010000053.1 Salmonella enterica strain PNUSAS355075 SAMN35713844-rid18364693.guided.41, whole genome shotgun sequence	677..1579	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEYX010000031.1 Salmonella enterica strain PNUSAS355075 SAMN35713844-rid18364693.denovo.31, whole genome shotgun sequence	8061..8202																																																						avrA	ABOEYX010000004.1	149913..150782	99.655	870	0						
GCA_032897745.1_PDT001776705.1_genomic.fna	Salmonella_enterica	0.5218	219.484 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEYV010000001.1 Salmonella enterica strain PNUSAS355085 SAMN35713831-rid18363273.denovo.01, whole genome shotgun sequence	380041..380478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEYV010000037.1 Salmonella enterica strain PNUSAS355085 SAMN35713831-rid18363273.guided.27, whole genome shotgun sequence	15018..15455	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEYV010000003.1	218367..219235	99.77	870	0						
GCA_032897765.1_PDT001776699.1_genomic.fna	Salmonella_enterica	0.5225	762.384 KB	2	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEYY010000001.1 Salmonella enterica strain PNUSAS355093 SAMN35713822-rid18361693.denovo.01, whole genome shotgun sequence	639483..639920	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOEYY010000021.1 Salmonella enterica strain PNUSAS355093 SAMN35713822-rid18361693.guided.10, whole genome shotgun sequence	18166..18603	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEYY010000003.1	553694..554563	99.77	870	0						
GCA_032897785.1_PDT001776702.1_genomic.fna	Salmonella_enterica	0.523	397.39 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEYW010000001.1 Salmonella enterica strain PNUSAS355087 SAMN35713833-rid18361713.denovo.01, whole genome shotgun sequence	173810..174247	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEYW010000034.1 Salmonella enterica strain PNUSAS355087 SAMN35713833-rid18361713.guided.27, whole genome shotgun sequence	1324..1761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEYW010000011.1	146984..147853	98.966	870	0						
GCA_032897805.1_PDT001776698.1_genomic.fna	Salmonella_enterica	0.5204	696.724 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEYZ010000001.1 Salmonella enterica strain PNUSAS355092 SAMN35713848-rid18364683.denovo.01, whole genome shotgun sequence	414575..415012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEYZ010000027.1 Salmonella enterica strain PNUSAS355092 SAMN35713848-rid18364683.guided.16, whole genome shotgun sequence	12140..12577	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032897825.1_PDT001776697.1_genomic.fna	Salmonella_enterica	0.5217	349.279 KB	4	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	10	aac(6')-Iaa,aadA2,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aph(6)-Id,aadA2,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,floR,floR,qnrB19,qnrB19,sul1,sul2,sul1,sul2,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncR	aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEZA010000001.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.denovo.01, whole genome shotgun sequence	613371..613808	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOEZA010000026.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.denovo.26, whole genome shotgun sequence	3732..4523	Spectinomycin, Streptomycin	JQ364967	aph(3'')-Ib	99.88	804/804	ABOEZA010000038.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.denovo.47, whole genome shotgun sequence	732..1535	Streptomycin	AF321551	aph(6)-Id	99.86	732/837	ABOEZA010000038.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.denovo.47, whole genome shotgun sequence	1..732	Streptomycin	AF024602	aph(6)-Id	99.86	732/837	ABOEZA010000038.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.denovo.47, whole genome shotgun sequence	1..732	Streptomycin	18676889	aph(6)-Id	99.86	732/837	ABOEZA010000038.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.denovo.47, whole genome shotgun sequence	1..732	Streptomycin	M28829	aadA2	100	792/792	ABOEZA010000050.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.guided.27, whole genome shotgun sequence	5974..6765	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	99.88	837/837	ABOEZA010000056.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.guided.44, whole genome shotgun sequence	836..1672	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOEZA010000056.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.guided.44, whole genome shotgun sequence	33..836	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOEZA010000057.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.guided.45, whole genome shotgun sequence	1220..1657	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	ABOEZA010000031.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.denovo.36, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEZA010000054.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.guided.35, whole genome shotgun sequence	2260..3473	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABOEZA010000033.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.denovo.39, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOEZA010000055.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.guided.38, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul1	100	840/840	ABOEZA010000026.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.denovo.26, whole genome shotgun sequence	2388..3227	Sulfamethoxazole	U12338	sul2	100	816/816	ABOEZA010000030.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.denovo.34, whole genome shotgun sequence	28..843	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOEZA010000050.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.guided.27, whole genome shotgun sequence	7270..8109	Sulfamethoxazole	U12338	sul2	100	816/816	ABOEZA010000058.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.guided.46, whole genome shotgun sequence	749..1564	Sulfamethoxazole	AY034138	tet(A)	99.92	1200/1200	ABOEZA010000028.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.denovo.32, whole genome shotgun sequence	2428..3627	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOEZA010000053.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.guided.31, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABOEZA010000026.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.denovo.26, whole genome shotgun sequence	4931..5428	Trimethoprim	AM040708	dfrA12	100	498/498	ABOEZA010000050.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.guided.27, whole genome shotgun sequence	5069..5566	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOEZA010000033.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.denovo.39, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOEZA010000055.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.guided.38, whole genome shotgun sequence	1962..2092		enterobacteriales	IncR	100	251 / 251	ABOEZA010000021.1 Salmonella enterica strain PNUSAS355089 SAMN35713843-rid18363263.denovo.21, whole genome shotgun sequence	13497..13747																																																				
GCA_032897845.1_PDT001776695.1_genomic.fna	Salmonella_enterica	0.5204	243.605 KB	7	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOEZC010000004.1 Salmonella enterica strain PNUSAS355078 SAMN35713851-rid18363243.denovo.04, whole genome shotgun sequence	145168..145605	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOEZC010000048.1 Salmonella enterica strain PNUSAS355078 SAMN35713851-rid18363243.guided.34, whole genome shotgun sequence	36..473	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABOEZC010000026.1 Salmonella enterica strain PNUSAS355078 SAMN35713851-rid18363243.denovo.26, whole genome shotgun sequence	22098..22740																																																						avrA	ABOEZC010000001.1	521758..522627	99.31	870	0						
GCA_032897865.1_PDT001776696.1_genomic.fna	Salmonella_enterica	0.5207	406.44 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEZB010000001.1 Salmonella enterica strain PNUSAS355097 SAMN35713854-rid18363253.denovo.01, whole genome shotgun sequence	208268..208705	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEZB010000036.1 Salmonella enterica strain PNUSAS355097 SAMN35713854-rid18363253.guided.20, whole genome shotgun sequence	8367..8804	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABOEZB010000016.1 Salmonella enterica strain PNUSAS355097 SAMN35713854-rid18363253.denovo.16, whole genome shotgun sequence	32011..32384																																																						avrA	ABOEZB010000002.1	415265..416134	99.54	870	0						
GCA_032897885.1_PDT001776694.1_genomic.fna	Salmonella_enterica	0.5211	655.688 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEZE010000001.1 Salmonella enterica strain PNUSAS355095 SAMN35713840-rid18360483.denovo.01, whole genome shotgun sequence	645054..645491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOEZE010000033.1 Salmonella enterica strain PNUSAS355095 SAMN35713840-rid18360483.guided.19, whole genome shotgun sequence	11437..11874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEZE010000003.1	514772..515640	99.54	870	0						
GCA_032897905.1_PDT001776692.1_genomic.fna	Salmonella_enterica	0.5228	419.026 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEZF010000001.1 Salmonella enterica strain PNUSAS355080 SAMN35713852-rid18361683.denovo.01, whole genome shotgun sequence	790327..790764	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEZF010000036.1 Salmonella enterica strain PNUSAS355080 SAMN35713852-rid18361683.guided.28, whole genome shotgun sequence	34..471	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEZF010000008.1	39451..40320	98.966	870	0						
GCA_032897925.1_PDT001776691.1_genomic.fna	Salmonella_enterica	0.5214	284.009 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEZD010000001.1 Salmonella enterica strain PNUSAS355079 SAMN35713838-rid18365803.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEZD010000018.1 Salmonella enterica strain PNUSAS355079 SAMN35713838-rid18365803.denovo.18, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOEZD010000018.1 Salmonella enterica strain PNUSAS355079 SAMN35713838-rid18365803.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABOEZD010000002.1	553529..554398	99.54	870	0						
GCA_032897945.1_PDT001776689.1_genomic.fna	Salmonella_enterica	0.5203	306.65 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEZH010000001.1 Salmonella enterica strain PNUSAS355088 SAMN35713841-rid18361663.denovo.01, whole genome shotgun sequence	727905..728342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEZH010000048.1 Salmonella enterica strain PNUSAS355088 SAMN35713841-rid18361663.guided.24, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEZH010000002.1	551169..552038	99.195	870	0						
GCA_032897965.1_PDT001776690.1_genomic.fna	Salmonella_enterica	0.5216	529.071 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOEZG010000001.1 Salmonella enterica strain PNUSAS355082 SAMN35713850-rid18361673.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOEZG010000028.1 Salmonella enterica strain PNUSAS355082 SAMN35713850-rid18361673.guided.16, whole genome shotgun sequence	16407..16844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEZG010000002.1	138321..139190	98.966	870	0						
GCA_032897985.1_PDT001776687.1_genomic.fna	Salmonella_enterica	0.5214	489.863 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEZJ010000001.1 Salmonella enterica strain PNUSAS355096 SAMN35713837-rid18361653.denovo.01, whole genome shotgun sequence	493020..493457	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEZJ010000024.1 Salmonella enterica strain PNUSAS355096 SAMN35713837-rid18361653.guided.20, whole genome shotgun sequence	1011..1448	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEZJ010000013.1 Salmonella enterica strain PNUSAS355096 SAMN35713837-rid18361653.denovo.13, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	ABOEZJ010000013.1 Salmonella enterica strain PNUSAS355096 SAMN35713837-rid18361653.denovo.13, whole genome shotgun sequence	51883..52144																																																avrA	ABOEZJ010000002.1	553532..554401	99.54	870	0						
GCA_032898005.1_PDT001776688.1_genomic.fna	Salmonella_enterica	0.5229	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEZI010000001.1 Salmonella enterica strain PNUSAS355098 SAMN35713847-rid18364663.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEZI010000023.1 Salmonella enterica strain PNUSAS355098 SAMN35713847-rid18364663.guided.15, whole genome shotgun sequence	9255..9692	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEZI010000002.1	157308..158177	98.966	870	0						
GCA_032898025.1_PDT001776685.1_genomic.fna	Salmonella_enterica	0.5207	406.268 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEZK010000001.1 Salmonella enterica strain PNUSAS355086 SAMN35713834-rid18363223.denovo.01, whole genome shotgun sequence	211039..211476	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEZK010000030.1 Salmonella enterica strain PNUSAS355086 SAMN35713834-rid18363223.guided.21, whole genome shotgun sequence	4057..4494	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEZK010000014.1 Salmonella enterica strain PNUSAS355086 SAMN35713834-rid18363223.denovo.14, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOEZK010000014.1 Salmonella enterica strain PNUSAS355086 SAMN35713834-rid18363223.denovo.14, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABOEZK010000015.1 Salmonella enterica strain PNUSAS355086 SAMN35713834-rid18363223.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABOEZK010000002.1	553480..554349	99.54	870	0						
GCA_032898045.1_PDT001776684.1_genomic.fna	Salmonella_enterica	0.5207	382.677 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI(Gamma)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEZL010000001.1 Salmonella enterica strain PNUSAS355091 SAMN35713846-rid18361643.denovo.01, whole genome shotgun sequence	477714..478151	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEZL010000041.1 Salmonella enterica strain PNUSAS355091 SAMN35713846-rid18361643.guided.19, whole genome shotgun sequence	12652..13089	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI(Gamma)	97.81	137 / 141	ABOEZL010000015.1 Salmonella enterica strain PNUSAS355091 SAMN35713846-rid18361643.denovo.15, whole genome shotgun sequence	15873..16009																																																						avrA	ABOEZL010000002.1	145182..146051	99.31	870	0						
GCA_032898065.1_PDT001776683.1_genomic.fna	Salmonella_enterica	0.5218	315.181 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOEZM010000001.1 Salmonella enterica strain PNUSAS355083 SAMN35713828-rid18364653.denovo.01, whole genome shotgun sequence	775233..775670	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOEZM010000042.1 Salmonella enterica strain PNUSAS355083 SAMN35713828-rid18364653.guided.23, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEZM010000003.1	153272..154141	99.195	870	0						
GCA_032898085.1_PDT001776681.1_genomic.fna	Salmonella_enterica	0.5223	352.29 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOEZN010000001.1 Salmonella enterica strain PNUSAS355189 SAMN35713779-rid18365793.denovo.01, whole genome shotgun sequence	399901..400338	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOEZN010000036.1 Salmonella enterica strain PNUSAS355189 SAMN35713779-rid18365793.guided.22, whole genome shotgun sequence	8202..8639	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOEZN010000025.1 Salmonella enterica strain PNUSAS355189 SAMN35713779-rid18365793.denovo.28, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABOEZN010000026.1 Salmonella enterica strain PNUSAS355189 SAMN35713779-rid18365793.denovo.29, whole genome shotgun sequence	2528..2639																																																avrA	ABOEZN010000006.1	174277..175145	99.425	870	0						
GCA_032898105.1_PDT001776678.1_genomic.fna	Salmonella_enterica	0.5219	503.995 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOEZO010000001.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.denovo.01, whole genome shotgun sequence	149984..150421	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOEZO010000019.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.denovo.25, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOEZO010000027.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.guided.16, whole genome shotgun sequence	7670..8107	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOEZO010000030.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.guided.24, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOEZO010000019.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.denovo.25, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOEZO010000030.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.guided.24, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOEZO010000018.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.denovo.21, whole genome shotgun sequence	6582..7487	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.78	906/906	ABOEZO010000028.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.guided.22, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOEZO010000029.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.guided.23, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOEZO010000013.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.denovo.14, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOEZO010000031.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.guided.26, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOEZO010000019.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.denovo.25, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOEZO010000030.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.guided.24, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOEZO010000018.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.denovo.21, whole genome shotgun sequence	432..1271	Sulfamethoxazole	U12338	sul1	100	840/840	ABOEZO010000033.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.guided.29, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOEZO010000013.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.denovo.14, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOEZO010000032.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.guided.27, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOEZO010000013.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.denovo.14, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOEZO010000032.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.guided.27, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOEZO010000013.1 Salmonella enterica strain PNUSAS355192 SAMN35713772-rid18364643.denovo.14, whole genome shotgun sequence	14940..15190																																																						avrA	ABOEZO010000003.1	174537..175406	99.77	870	0						
GCA_032898125.1_PDT001776677.1_genomic.fna	Salmonella_enterica	0.5197	362.036 KB	5	aroC_18,dnaN_14,hemD_12,hisD_9,purE_5,sucA_18,thrA_21	36	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_14	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_18	thrA	100	100	thrA_21	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEZP010000001.1 Salmonella enterica strain PNUSAS355186 SAMN35713776-rid18361613.denovo.01, whole genome shotgun sequence	278660..279097	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEZP010000033.1 Salmonella enterica strain PNUSAS355186 SAMN35713776-rid18361613.guided.23, whole genome shotgun sequence	20567..21004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOEZP010000003.1	174530..175399	99.885	870	0						
GCA_032898145.1_PDT001776676.1_genomic.fna	Salmonella_enterica	0.5201	242.472 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOEZQ010000001.1 Salmonella enterica strain PNUSAS355177 SAMN35713780-rid18363213.denovo.01, whole genome shotgun sequence	569502..569939	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOEZQ010000043.1 Salmonella enterica strain PNUSAS355177 SAMN35713780-rid18363213.guided.29, whole genome shotgun sequence	21172..21609	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOEZQ010000019.1 Salmonella enterica strain PNUSAS355177 SAMN35713780-rid18363213.denovo.19, whole genome shotgun sequence	67265..68470	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOEZQ010000045.1 Salmonella enterica strain PNUSAS355177 SAMN35713780-rid18363213.guided.31, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEZQ010000019.1 Salmonella enterica strain PNUSAS355177 SAMN35713780-rid18363213.denovo.19, whole genome shotgun sequence	74856..74997	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEZQ010000045.1 Salmonella enterica strain PNUSAS355177 SAMN35713780-rid18363213.guided.31, whole genome shotgun sequence	3169..3310																																																avrA	ABOEZQ010000007.1	174926..175795	99.885	870	0						
GCA_032898165.1_PDT001776675.1_genomic.fna	Salmonella_enterica	0.5222	438.146 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOEZR010000001.1 Salmonella enterica strain PNUSAS355191 SAMN35713781-rid18363203.denovo.01, whole genome shotgun sequence	177159..177596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOEZR010000028.1 Salmonella enterica strain PNUSAS355191 SAMN35713781-rid18363203.guided.21, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOEZR010000002.1	563792..564661	99.77	870	0						
GCA_032898185.1_PDT001776674.1_genomic.fna	Salmonella_enterica	0.5229	600.552 KB	3	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	7	aac(6')-Iaa,aadA2,aadA2,aadA2,aac(6')-Iaa,blaCARB-2,blaCARB-2,qnrA1,qnrA1,sul1,sul1,sul1,tet(C),tet(C),dfrA12,dfrA12	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEZS010000001.1 Salmonella enterica strain PNUSAS355181 SAMN35713775-rid18361603.denovo.01, whole genome shotgun sequence	834935..835372	Amikacin, Tobramycin	NC_003197	aadA2	99.87	792/792	ABOEZS010000024.1 Salmonella enterica strain PNUSAS355181 SAMN35713775-rid18361603.denovo.29, whole genome shotgun sequence	1348..2139	Spectinomycin, Streptomycin	JQ364967	aadA2	99.87	792/792	ABOEZS010000035.1 Salmonella enterica strain PNUSAS355181 SAMN35713775-rid18361603.guided.26, whole genome shotgun sequence	8062..8853	Spectinomycin, Streptomycin	JQ364967	aadA2	99.87	792/792	ABOEZS010000036.1 Salmonella enterica strain PNUSAS355181 SAMN35713775-rid18361603.guided.28, whole genome shotgun sequence	4194..4985	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.95	438/438	ABOEZS010000037.1 Salmonella enterica strain PNUSAS355181 SAMN35713775-rid18361603.guided.31, whole genome shotgun sequence	532..969	Amikacin, Tobramycin	NC_003197	blaCARB-2	100	867/867	ABOEZS010000024.1 Salmonella enterica strain PNUSAS355181 SAMN35713775-rid18361603.denovo.29, whole genome shotgun sequence	2257..3123	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOEZS010000036.1 Salmonella enterica strain PNUSAS355181 SAMN35713775-rid18361603.guided.28, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	qnrA1	100	657/657	ABOEZS010000024.1 Salmonella enterica strain PNUSAS355181 SAMN35713775-rid18361603.denovo.29, whole genome shotgun sequence	3383..4039	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOEZS010000036.1 Salmonella enterica strain PNUSAS355181 SAMN35713775-rid18361603.guided.28, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOEZS010000024.1 Salmonella enterica strain PNUSAS355181 SAMN35713775-rid18361603.denovo.29, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOEZS010000035.1 Salmonella enterica strain PNUSAS355181 SAMN35713775-rid18361603.guided.26, whole genome shotgun sequence	9358..10197	Sulfamethoxazole	U12338	sul1	100	840/840	ABOEZS010000036.1 Salmonella enterica strain PNUSAS355181 SAMN35713775-rid18361603.guided.28, whole genome shotgun sequence	5490..6329	Sulfamethoxazole	U12338	tet(C)	99.92	1191/1191	ABOEZS010000023.1 Salmonella enterica strain PNUSAS355181 SAMN35713775-rid18361603.denovo.27, whole genome shotgun sequence	6937..8127	Doxycycline, Tetracycline	AF055345	tet(C)	99.92	1191/1191	ABOEZS010000035.1 Salmonella enterica strain PNUSAS355181 SAMN35713775-rid18361603.guided.26, whole genome shotgun sequence	141..1331	Doxycycline, Tetracycline	AF055345	dfrA12	100	498/498	ABOEZS010000023.1 Salmonella enterica strain PNUSAS355181 SAMN35713775-rid18361603.denovo.27, whole genome shotgun sequence	614..1111	Trimethoprim	AM040708	dfrA12	100	498/498	ABOEZS010000035.1 Salmonella enterica strain PNUSAS355181 SAMN35713775-rid18361603.guided.26, whole genome shotgun sequence	7157..7654	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032898205.1_PDT001776672.1_genomic.fna	Salmonella_enterica	0.5212	406.453 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEZV010000001.1 Salmonella enterica strain PNUSAS355178 SAMN35713778-rid18361593.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEZV010000028.1 Salmonella enterica strain PNUSAS355178 SAMN35713778-rid18361593.guided.21, whole genome shotgun sequence	3258..3695	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEZV010000017.1 Salmonella enterica strain PNUSAS355178 SAMN35713778-rid18361593.denovo.18, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABOEZV010000019.1 Salmonella enterica strain PNUSAS355178 SAMN35713778-rid18361593.denovo.22, whole genome shotgun sequence	3383..3644																																																avrA	ABOEZV010000002.1	553678..554547	99.54	870	0						
GCA_032898225.1_PDT001776673.1_genomic.fna	Salmonella_enterica	0.5211	386.287 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOEZU010000001.1 Salmonella enterica strain PNUSAS355176 SAMN35713777-rid18364633.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOEZU010000024.1 Salmonella enterica strain PNUSAS355176 SAMN35713777-rid18364633.guided.17, whole genome shotgun sequence	11136..11573	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032898245.1_PDT001776669.1_genomic.fna	Salmonella_enterica	0.5209	417.915 KB	5	aroC_70,dnaN_7,hemD_10,hisD_10,purE_2,sucA_10,thrA_14	181	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_70	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_2	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOEZT010000003.1 Salmonella enterica strain PNUSAS355188 SAMN35713754-rid18361573.denovo.03, whole genome shotgun sequence	149683..150120	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOEZT010000035.1 Salmonella enterica strain PNUSAS355188 SAMN35713754-rid18361573.guided.23, whole genome shotgun sequence	3250..3687	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOEZT010000014.1 Salmonella enterica strain PNUSAS355188 SAMN35713754-rid18361573.denovo.14, whole genome shotgun sequence	67250..67391																																																						avrA	ABOEZT010000001.1	524662..525531	99.31	870	0						
GCA_032898265.1_PDT001776668.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOEZW010000001.1 Salmonella enterica strain PNUSAS355179 SAMN35713770-rid18364623.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOEZW010000025.1 Salmonella enterica strain PNUSAS355179 SAMN35713770-rid18364623.guided.18, whole genome shotgun sequence	9458..9895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOEZW010000018.1 Salmonella enterica strain PNUSAS355179 SAMN35713770-rid18364623.denovo.19, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOEZW010000019.1 Salmonella enterica strain PNUSAS355179 SAMN35713770-rid18364623.denovo.22, whole genome shotgun sequence	3374..3635																																																avrA	ABOEZW010000002.1	553636..554505	99.54	870	0						
GCA_032898305.1_PDT001776663.1_genomic.fna	Salmonella_enterica	0.5201	578.004 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOEZY010000002.1 Salmonella enterica strain PNUSAS355185 SAMN35713774-rid18364613.denovo.02, whole genome shotgun sequence	467375..467812	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOEZY010000032.1 Salmonella enterica strain PNUSAS355185 SAMN35713774-rid18364613.guided.22, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032898325.1_PDT001776662.1_genomic.fna	Salmonella_enterica	0.5216	762.439 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOFAA010000001.1 Salmonella enterica strain PNUSAS355183 SAMN35713761-rid18361543.denovo.01, whole genome shotgun sequence	481927..482364	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOFAA010000024.1 Salmonella enterica strain PNUSAS355183 SAMN35713761-rid18361543.guided.11, whole genome shotgun sequence	42414..42851	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOFAA010000002.1	597153..598022	99.655	870	0						
GCA_032898365.1_PDT001776652.1_genomic.fna	Salmonella_enterica	0.5225	294.786 KB	7	aroC_2,dnaN_14,hemD_24,hisD_14,purE_37,sucA_19,thrA_8	86	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_37	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B	Detected the SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFAF010000002.1 Salmonella enterica strain PNUSAS355190 SAMN35713757-rid18361513.denovo.02, whole genome shotgun sequence	341394..341831	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFAF010000033.1 Salmonella enterica strain PNUSAS355190 SAMN35713757-rid18361513.guided.29, whole genome shotgun sequence	12036..12473	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032898385.1_PDT001776659.1_genomic.fna	Salmonella_enterica	0.5221	272.167 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFAC010000002.1 Salmonella enterica strain PNUSAS355184 SAMN35713768-rid18365763.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFAC010000038.1 Salmonella enterica strain PNUSAS355184 SAMN35713768-rid18365763.guided.32, whole genome shotgun sequence	2161..2598	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOFAC010000023.1 Salmonella enterica strain PNUSAS355184 SAMN35713768-rid18365763.denovo.23, whole genome shotgun sequence	44697..45339	enterobacteriales	IncFII(S)	100	262 / 262	ABOFAC010000023.1 Salmonella enterica strain PNUSAS355184 SAMN35713768-rid18365763.denovo.23, whole genome shotgun sequence	29351..29612																																																avrA	ABOFAC010000007.1	97953..98821	100	869	0						
GCA_032898425.1_PDT001776657.1_genomic.fna	Salmonella_enterica	0.5226	380.131 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOFAE010000001.1 Salmonella enterica strain PNUSAS355182 SAMN35713759-rid18361523.denovo.01, whole genome shotgun sequence	400346..400783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOFAE010000037.1 Salmonella enterica strain PNUSAS355182 SAMN35713759-rid18361523.guided.23, whole genome shotgun sequence	765..1202	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOFAE010000024.1 Salmonella enterica strain PNUSAS355182 SAMN35713759-rid18361523.denovo.27, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABOFAE010000025.1 Salmonella enterica strain PNUSAS355182 SAMN35713759-rid18361523.denovo.28, whole genome shotgun sequence	2528..2639																																																avrA	ABOFAE010000007.1	174277..175145	99.425	870	0						
GCA_032898445.1_PDT001776658.1_genomic.fna	Salmonella_enterica	0.5213	60.908 KB	25	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	-:f,g:-	5	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,fosA7,fosA7,tet(M),tet(A),tet(A),tet(M)	1	parC_p.T57S	5	Col(pHAD28),Col156,Col440I,IncI1-I(Alpha),IncX4	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	-	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOFAB010000005.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313230 SAMN35713743-rid18364603.denovo.005, whole genome shotgun sequence	102194..102631	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOFAB010000188.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313230 SAMN35713743-rid18364603.guided.089, whole genome shotgun sequence	14096..14533	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOFAB010000088.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313230 SAMN35713743-rid18364603.denovo.092, whole genome shotgun sequence	14289..15149	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFAB010000189.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313230 SAMN35713743-rid18364603.guided.090, whole genome shotgun sequence	75..935	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	fosA7	97.16	423/423	ABOFAB010000014.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313230 SAMN35713743-rid18364603.denovo.014, whole genome shotgun sequence	87752..88174	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOFAB010000186.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313230 SAMN35713743-rid18364603.guided.065, whole genome shotgun sequence	18574..18996	Fosfomycin	LAPJ01000014	tet(M)	96.15	1920/1920	ABOFAB010000097.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313230 SAMN35713743-rid18364603.denovo.102, whole genome shotgun sequence	845..2764	Doxycycline, Tetracycline, Minocycline	X04388	tet(A)	99.92	1200/1200	ABOFAB010000118.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313230 SAMN35713743-rid18364603.denovo.123, whole genome shotgun sequence	3214..4413	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOFAB010000191.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313230 SAMN35713743-rid18364603.guided.128, whole genome shotgun sequence	850..2049	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	ABOFAB010000192.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313230 SAMN35713743-rid18364603.guided.141, whole genome shotgun sequence	886..2805	Doxycycline, Tetracycline, Minocycline	X04388																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFAB010000126.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313230 SAMN35713743-rid18364603.denovo.132, whole genome shotgun sequence	186..316	enterobacteriales	Col156	94.81	154 / 154	ABOFAB010000119.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313230 SAMN35713743-rid18364603.denovo.124, whole genome shotgun sequence	792..945		enterobacteriales	Col440I	93.64	110 / 114	ABOFAB010000134.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313230 SAMN35713743-rid18364603.denovo.140, whole genome shotgun sequence	1568..1677		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOFAB010000059.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313230 SAMN35713743-rid18364603.denovo.059, whole genome shotgun sequence	10054..10195		enterobacteriales	IncX4	99.73	374 / 374	ABOFAB010000103.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22313230 SAMN35713743-rid18364603.denovo.108, whole genome shotgun sequence	8373..8746																											avrA	ABOFAB010000018.1	81669..82538	99.655	870	0						
GCA_032898465.1_PDT001776649.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFAG010000001.1 Salmonella enterica strain PNUSAS355180 SAMN35713762-rid18365743.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFAG010000021.1 Salmonella enterica strain PNUSAS355180 SAMN35713762-rid18365743.guided.12, whole genome shotgun sequence	42582..43019	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFAG010000015.1 Salmonella enterica strain PNUSAS355180 SAMN35713762-rid18365743.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOFAG010000016.1 Salmonella enterica strain PNUSAS355180 SAMN35713762-rid18365743.denovo.19, whole genome shotgun sequence	3402..3663																																																avrA	ABOFAG010000002.1	553636..554505	99.54	870	0						
GCA_032898485.1_PDT001776648.1_genomic.fna	Salmonella_enterica	0.521	412.987 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFAI010000001.1 Salmonella enterica strain PNUSAS355187 SAMN35713763-rid18364573.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFAI010000025.1 Salmonella enterica strain PNUSAS355187 SAMN35713763-rid18364573.guided.17, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFAI010000017.1 Salmonella enterica strain PNUSAS355187 SAMN35713763-rid18364573.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOFAI010000018.1 Salmonella enterica strain PNUSAS355187 SAMN35713763-rid18364573.denovo.21, whole genome shotgun sequence	3412..3673																																																avrA	ABOFAI010000002.1	553181..554050	99.54	870	0						
GCA_032898505.1_PDT001948842.1_genomic.fna	Salmonella_enterica	0.5227	526.709 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFAH010000001.1 Salmonella enterica strain PNUSAS393891 SAMN37904919-rid19915233.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOFAH010000028.1 Salmonella enterica strain PNUSAS393891 SAMN37904919-rid19915233.guided.13, whole genome shotgun sequence	22341..22778	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFAH010000003.1	150300..151169	99.655	870	0						
GCA_032898525.1_PDT001776646.1_genomic.fna	Salmonella_enterica	0.5209	45.174 KB	31	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	12	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-220,blaTEM-32,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-20,blaTEM-1C,blaTEM-1B,blaTEM-220,blaTEM-32,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-20,blaTEM-1C,blaTEM-1B,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFAL010000016.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.denovo.016, whole genome shotgun sequence	12467..12904	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFAL010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.denovo.119, whole genome shotgun sequence	6427..7263	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOFAL010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.denovo.119, whole genome shotgun sequence	7263..8066	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOFAL010000231.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.guided.098, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFAL010000234.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.guided.140, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOFAL010000234.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.guided.140, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	blaTEM-220	99.77	861/861	ABOFAL010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.denovo.053, whole genome shotgun sequence	192..1052	Unknown Beta-lactam	KM998962	blaTEM-32	99.77	861/861	ABOFAL010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.denovo.053, whole genome shotgun sequence	192..1052	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	CXLQ01000061	blaTEM-135	99.77	861/861	ABOFAL010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.denovo.053, whole genome shotgun sequence	192..1052	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.77	861/861	ABOFAL010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.denovo.053, whole genome shotgun sequence	192..1052	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.77	861/861	ABOFAL010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.denovo.053, whole genome shotgun sequence	192..1052	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-20	99.77	861/861	ABOFAL010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.denovo.053, whole genome shotgun sequence	192..1052	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EU527189	blaTEM-1C	99.77	861/861	ABOFAL010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.denovo.053, whole genome shotgun sequence	192..1052	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1B	99.77	861/861	ABOFAL010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.denovo.053, whole genome shotgun sequence	192..1052	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.77	861/861	ABOFAL010000230.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.guided.054, whole genome shotgun sequence	904..1764	Unknown Beta-lactam	KM998962	blaTEM-32	99.77	861/861	ABOFAL010000230.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.guided.054, whole genome shotgun sequence	904..1764	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	CXLQ01000061	blaTEM-135	99.77	861/861	ABOFAL010000230.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.guided.054, whole genome shotgun sequence	904..1764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.77	861/861	ABOFAL010000230.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.guided.054, whole genome shotgun sequence	904..1764	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.77	861/861	ABOFAL010000230.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.guided.054, whole genome shotgun sequence	904..1764	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-20	99.77	861/861	ABOFAL010000230.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.guided.054, whole genome shotgun sequence	904..1764	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EU527189	blaTEM-1C	99.77	861/861	ABOFAL010000230.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.guided.054, whole genome shotgun sequence	904..1764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1B	99.77	861/861	ABOFAL010000230.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.guided.054, whole genome shotgun sequence	904..1764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(B)	99.92	1206/1206	ABOFAL010000163.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.denovo.168, whole genome shotgun sequence	1688..2893	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFAL010000235.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.guided.187, whole genome shotgun sequence	517..1722	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOFAL010000153.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.denovo.158, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABOFAL010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.denovo.119, whole genome shotgun sequence	5543..5804		enterobacteriales	IncFII	96.95	262 / 261	ABOFAL010000234.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.guided.140, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOFAL010000176.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.denovo.181, whole genome shotgun sequence	252..393		enterobacteriales	IncX1	100	373 / 373	ABOFAL010000183.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313136 SAMN35713750-rid18364563.denovo.189, whole genome shotgun sequence	1116..1488																											avrA	ABOFAL010000033.1	39484..40353	99.655	870	0						
GCA_032898605.1_PDT001776642.1_genomic.fna	Salmonella_enterica	0.5211	81.402 KB	18	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFAK010000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313148 SAMN35713716-rid18361493.denovo.009, whole genome shotgun sequence	82006..82443	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFAK010000130.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313148 SAMN35713716-rid18361493.guided.051, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABOFAK010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313148 SAMN35713716-rid18361493.denovo.077, whole genome shotgun sequence	1167..1426	enterobacteriales	IncX1	100	373 / 373	ABOFAK010000099.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313148 SAMN35713716-rid18361493.denovo.102, whole genome shotgun sequence	2153..2525																																																avrA	ABOFAK010000038.1	39484..40353	99.655	870	0						
GCA_032898625.1_PDT001776635.1_genomic.fna	Salmonella_enterica	0.5236	52.351 KB	30	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFAP010000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313223 SAMN35713706-rid18363123.denovo.009, whole genome shotgun sequence	13052..13489	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFAP010000196.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313223 SAMN35713706-rid18363123.guided.115, whole genome shotgun sequence	7383..7820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOFAP010000113.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313223 SAMN35713706-rid18363123.denovo.116, whole genome shotgun sequence	6821..7463	enterobacteriales	IncFII(S)	100	262 / 262	ABOFAP010000094.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313223 SAMN35713706-rid18363123.denovo.095, whole genome shotgun sequence	12528..12789																																																avrA	ABOFAP010000007.1	94133..95001	100	869	0						
GCA_032898665.1_PDT001776634.1_genomic.fna	Salmonella_enterica	0.5239	50.201 KB	29	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFAQ010000022.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313138 SAMN35713599-rid18364523.denovo.022, whole genome shotgun sequence	1674..2111	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFAQ010000161.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313138 SAMN35713599-rid18364523.guided.101, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOFAQ010000122.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313138 SAMN35713599-rid18364523.denovo.126, whole genome shotgun sequence	371..501	enterobacteriales	Col440I	91.74	109 / 114	ABOFAQ010000126.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313138 SAMN35713599-rid18364523.denovo.130, whole genome shotgun sequence	2246..2354		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOFAQ010000124.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313138 SAMN35713599-rid18364523.denovo.128, whole genome shotgun sequence	186..327																																																				
GCA_032898685.1_PDT001776631.1_genomic.fna	Salmonella_enterica	0.5206	76.881 KB	21	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFAS010000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313195 SAMN35713746-rid18363113.denovo.008, whole genome shotgun sequence	84702..85139	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFAS010000144.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313195 SAMN35713746-rid18363113.guided.055, whole genome shotgun sequence	15864..16301	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABOFAS010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313195 SAMN35713746-rid18363113.denovo.077, whole genome shotgun sequence	4655..4914	enterobacteriales	IncX1	100	373 / 373	ABOFAS010000112.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313195 SAMN35713746-rid18363113.denovo.115, whole genome shotgun sequence	1156..1528																																																avrA	ABOFAS010000042.1	39484..40353	99.655	870	0						
GCA_032898705.1_PDT001776630.1_genomic.fna	Salmonella_enterica	0.5214	406.92 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFAU010000001.1 Salmonella enterica strain PNUSAS355200 SAMN35713539-rid18363103.denovo.01, whole genome shotgun sequence	780608..781045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFAU010000026.1 Salmonella enterica strain PNUSAS355200 SAMN35713539-rid18363103.guided.21, whole genome shotgun sequence	12407..12844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFAU010000020.1 Salmonella enterica strain PNUSAS355200 SAMN35713539-rid18363103.denovo.20, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABOFAU010000021.1 Salmonella enterica strain PNUSAS355200 SAMN35713539-rid18363103.denovo.24, whole genome shotgun sequence	3402..3663																																																avrA	ABOFAU010000002.1	553373..554242	99.54	870	0						
GCA_032898725.1_PDT001776628.1_genomic.fna	Salmonella_enterica	0.5217	68.37 KB	21	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	-:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFAT010000021.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313142 SAMN35713678-rid18364503.denovo.021, whole genome shotgun sequence	52437..52874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFAT010000093.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313142 SAMN35713678-rid18364503.denovo.096, whole genome shotgun sequence	5743..6579	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOFAT010000093.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313142 SAMN35713678-rid18364503.denovo.096, whole genome shotgun sequence	6579..7382	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOFAT010000166.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313142 SAMN35713678-rid18364503.guided.078, whole genome shotgun sequence	15601..16038	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFAT010000171.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313142 SAMN35713678-rid18364503.guided.108, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOFAT010000171.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313142 SAMN35713678-rid18364503.guided.108, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	ABOFAT010000001.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313142 SAMN35713678-rid18364503.denovo.001, whole genome shotgun sequence	94842..95264	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	ABOFAT010000170.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313142 SAMN35713678-rid18364503.guided.104, whole genome shotgun sequence	4950..5372	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	ABOFAT010000117.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313142 SAMN35713678-rid18364503.denovo.124, whole genome shotgun sequence	1906..3111	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFAT010000172.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313142 SAMN35713678-rid18364503.guided.121, whole genome shotgun sequence	1937..3142	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOFAT010000111.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313142 SAMN35713678-rid18364503.denovo.117, whole genome shotgun sequence	1965..2646	enterobacteriales	IncFII	96.95	262 / 261	ABOFAT010000093.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313142 SAMN35713678-rid18364503.denovo.096, whole genome shotgun sequence	4859..5120		enterobacteriales	IncFII	96.95	262 / 261	ABOFAT010000171.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313142 SAMN35713678-rid18364503.guided.108, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOFAT010000089.1 Salmonella enterica subsp. enterica serovar Alachua strain FSIS22313142 SAMN35713678-rid18364503.denovo.091, whole genome shotgun sequence	2153..2525																																		avrA	ABOFAT010000008.1	113016..113885	99.08	870	0						
GCA_032898765.1_PDT001776619.1_genomic.fna	Salmonella_enterica	0.5197	77.918 KB	20	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		3	Col(pHAD28),IncHI2,IncHI2A	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFAW010000012.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.denovo.012, whole genome shotgun sequence	15474..15911	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOFAW010000074.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.denovo.075, whole genome shotgun sequence	12451..13353	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABOFAW010000074.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.denovo.075, whole genome shotgun sequence	13517..14308	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABOFAW010000138.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.guided.091, whole genome shotgun sequence	7221..7658	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOFAW010000140.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.guided.107, whole genome shotgun sequence	37..939	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABOFAW010000141.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.guided.109, whole genome shotgun sequence	3505..4296	Spectinomycin, Streptomycin	JQ414041	sul2	100	816/816	ABOFAW010000028.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.denovo.028, whole genome shotgun sequence	19756..20571	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOFAW010000074.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.denovo.075, whole genome shotgun sequence	5612..6451	Sulfamethoxazole	X15024	sul2	100	816/816	ABOFAW010000135.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.guided.059, whole genome shotgun sequence	19797..20612	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOFAW010000139.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.guided.100, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABOFAW010000028.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.denovo.028, whole genome shotgun sequence	22748..23947	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABOFAW010000116.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.denovo.124, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABOFAW010000135.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.guided.059, whole genome shotgun sequence	22789..23988	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABOFAW010000142.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.guided.122, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOFAW010000101.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.denovo.106, whole genome shotgun sequence	371..501	enterobacteriales	IncHI2	100	327 / 327	ABOFAW010000047.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.denovo.047, whole genome shotgun sequence	24198..24524		enterobacteriales	IncHI2A	99.52	630 / 630	ABOFAW010000047.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313147 SAMN35713721-rid18363073.denovo.047, whole genome shotgun sequence	31563..32192																																									avrA	ABOFAW010000008.1	94133..95002	99.885	870	0						
GCA_032898785.1_PDT001776620.1_genomic.fna	Salmonella_enterica	0.5231	81.434 KB	17	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFAV010000025.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS22313194 SAMN35713718-rid18363083.denovo.025, whole genome shotgun sequence	52235..52672	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFAV010000101.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS22313194 SAMN35713718-rid18363083.guided.068, whole genome shotgun sequence	14255..14692	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032898805.1_PDT001776618.1_genomic.fna	Salmonella_enterica	0.5236	50.469 KB	30	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFAX010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.denovo.060, whole genome shotgun sequence	14097..14534	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFAX010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.denovo.080, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFAX010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.denovo.080, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOFAX010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.denovo.141, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOFAX010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.denovo.141, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOFAX010000184.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.guided.063, whole genome shotgun sequence	14098..14535	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFAX010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.guided.118, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFAX010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.guided.118, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOFAX010000189.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.guided.139, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOFAX010000189.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.guided.139, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOFAX010000138.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.denovo.145, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOFAX010000190.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.guided.143, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOFAX010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.denovo.131, whole genome shotgun sequence	3189..4402	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOFAX010000188.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.guided.134, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOFAX010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.denovo.080, whole genome shotgun sequence	17100..17939	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFAX010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.guided.118, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOFAX010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.denovo.080, whole genome shotgun sequence	3384..4583	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFAX010000191.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.guided.150, whole genome shotgun sequence	2232..3431	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOFAX010000192.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.guided.151, whole genome shotgun sequence	2232..3431	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOFAX010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313226 SAMN35713709-rid18364463.denovo.098, whole genome shotgun sequence	13998..14557																																																						avrA	ABOFAX010000039.1	43547..44416	99.655	870	0						
GCA_032898825.1_PDT001776612.1_genomic.fna	Salmonella_enterica	0.5228	49.977 KB	31	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aadA1,aac(3)-VIa,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFAZ010000020.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313224 SAMN35713707-rid18361433.denovo.020, whole genome shotgun sequence	12505..12942	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOFAZ010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313224 SAMN35713707-rid18361433.denovo.096, whole genome shotgun sequence	12506..13408	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABOFAZ010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313224 SAMN35713707-rid18361433.denovo.096, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABOFAZ010000183.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313224 SAMN35713707-rid18361433.guided.042, whole genome shotgun sequence	24760..25197	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOFAZ010000186.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313224 SAMN35713707-rid18361433.guided.138, whole genome shotgun sequence	3505..4296	Spectinomycin, Streptomycin	JQ414041	aac(3)-VIa	100	903/903	ABOFAZ010000189.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313224 SAMN35713707-rid18361433.guided.172, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	sul2	100	816/816	ABOFAZ010000029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313224 SAMN35713707-rid18361433.denovo.030, whole genome shotgun sequence	45477..46292	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOFAZ010000093.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313224 SAMN35713707-rid18361433.denovo.096, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul2	100	816/816	ABOFAZ010000182.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313224 SAMN35713707-rid18361433.guided.029, whole genome shotgun sequence	45508..46323	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOFAZ010000185.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313224 SAMN35713707-rid18361433.guided.130, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABOFAZ010000029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313224 SAMN35713707-rid18361433.denovo.030, whole genome shotgun sequence	48469..49668	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABOFAZ010000154.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313224 SAMN35713707-rid18361433.denovo.161, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABOFAZ010000182.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313224 SAMN35713707-rid18361433.guided.029, whole genome shotgun sequence	48500..49699	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABOFAZ010000188.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313224 SAMN35713707-rid18361433.guided.159, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOFAZ010000132.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313224 SAMN35713707-rid18361433.denovo.136, whole genome shotgun sequence	371..501																																																						avrA	ABOFAZ010000021.1	62148..63017	99.885	870	0						
GCA_032898845.1_PDT001776613.1_genomic.fna	Salmonella_enterica	0.5225	73.893 KB	21	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFAY010000008.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313143 SAMN35713676-rid18364443.denovo.008, whole genome shotgun sequence	62400..62837	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFAY010000140.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313143 SAMN35713676-rid18364443.guided.034, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFAY010000088.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313143 SAMN35713676-rid18364443.denovo.090, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABOFAY010000100.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313143 SAMN35713676-rid18364443.denovo.103, whole genome shotgun sequence	3384..3645																																																avrA	ABOFAY010000010.1	98310..99179	99.54	870	0						
GCA_032898865.1_PDT001776610.1_genomic.fna	Salmonella_enterica	0.5219	349.249 KB	6	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFBB010000001.1 Salmonella enterica strain PNUSAS355202 SAMN35713542-rid18363063.denovo.01, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFBB010000034.1 Salmonella enterica strain PNUSAS355202 SAMN35713542-rid18363063.guided.19, whole genome shotgun sequence	24828..25265	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOFBB010000025.1 Salmonella enterica strain PNUSAS355202 SAMN35713542-rid18363063.denovo.28, whole genome shotgun sequence	557..687	enterobacteriales	ColRNAI	90.83	109 / 130	ABOFBB010000023.1 Salmonella enterica strain PNUSAS355202 SAMN35713542-rid18363063.denovo.26, whole genome shotgun sequence	1016..1124																																																avrA	ABOFBB010000012.1	36960..37829	99.425	870	0						
GCA_032898885.1_PDT001776608.1_genomic.fna	Salmonella_enterica	0.5219	104.529 KB	16	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFBA010000017.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313145 SAMN35713674-rid18364423.denovo.17, whole genome shotgun sequence	16073..16510	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFBA010000091.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313145 SAMN35713674-rid18364423.guided.47, whole genome shotgun sequence	12388..12825	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFBA010000059.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313145 SAMN35713674-rid18364423.denovo.62, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOFBA010000068.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313145 SAMN35713674-rid18364423.denovo.71, whole genome shotgun sequence	3382..3643																																																avrA	ABOFBA010000002.1	175197..176066	99.54	870	0						
GCA_032898905.1_PDT001776605.1_genomic.fna	Salmonella_enterica	0.5138	183.087 KB	9	aroC_33,dnaN_173,hemD_30,hisD_26,purE_141,sucA_275,thrA_28	1256	48:i:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_173	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_141	sucA	100	100	sucA_275	thrA	100	100	thrA_28	48	i	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:i:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFBD010000017.1 Salmonella enterica strain PNUSAS355207 SAMN35713547-rid18361423.denovo.17, whole genome shotgun sequence	79085..79522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOFBD010000064.1 Salmonella enterica strain PNUSAS355207 SAMN35713547-rid18361423.guided.45, whole genome shotgun sequence	4733..5170	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFBD010000010.1	76937..77806	96.667	870	0						
GCA_032898925.1_PDT001776607.1_genomic.fna	Salmonella_enterica	0.5218	46.368 KB	32	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncHI2A	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFBC010000017.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313135 SAMN35713588-rid18360443.denovo.017, whole genome shotgun sequence	12492..12929	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFBC010000231.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313135 SAMN35713588-rid18360443.guided.088, whole genome shotgun sequence	14236..14673	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFBC010000145.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313135 SAMN35713588-rid18360443.denovo.148, whole genome shotgun sequence	3094..3224	enterobacteriales	IncHI2A	99.52	630 / 630	ABOFBC010000143.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313135 SAMN35713588-rid18360443.denovo.146, whole genome shotgun sequence	1570..2199																																																avrA	ABOFBC010000028.1	39484..40353	99.655	870	0						
GCA_032898945.1_PDT001776604.1_genomic.fna	Salmonella_enterica	0.5222	48.868 KB	32	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	-:i:-	12	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Ib-cr,aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Ib-cr,blaOXA-1,blaTEM-1B,blaTEM-1B,blaOXA-1,qnrB1,qnrB1,sul2,sul2,tet(B),tet(A),tet(B),tet(A),dfrA14,dfrA14	0		1	IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	-	Salmonella enterica subspecies enterica (subspecies I)	I -:i:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFBF010000012.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.denovo.012, whole genome shotgun sequence	12520..12957	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOFBF010000131.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.denovo.135, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABOFBF010000144.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.denovo.150, whole genome shotgun sequence	5..841	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFBF010000144.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.denovo.150, whole genome shotgun sequence	841..1644	Streptomycin	AF321551	aac(6')-Ib-cr	100	600/600	ABOFBF010000165.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.denovo.174, whole genome shotgun sequence	1539..2138	Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin, Ciprofloxacin	DQ303918	aac(6')-Iaa	100	438/438	ABOFBF010000197.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.guided.082, whole genome shotgun sequence	9443..9880	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOFBF010000200.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.guided.134, whole genome shotgun sequence	1840..2655	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABOFBF010000204.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.guided.168, whole genome shotgun sequence	1828..2664	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFBF010000204.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.guided.168, whole genome shotgun sequence	1025..1828	Streptomycin	AF321551	aac(6')-Ib-cr	100	600/600	ABOFBF010000208.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.guided.200, whole genome shotgun sequence	85..684	Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin, Ciprofloxacin	DQ303918	blaOXA-1	100	831/831	ABOFBF010000165.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.denovo.174, whole genome shotgun sequence	578..1408	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Piperacillin, Piperacillin+Tazobactam	HQ170510	blaTEM-1B	100	861/861	ABOFBF010000169.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.denovo.179, whole genome shotgun sequence	533..1393	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFBF010000206.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.guided.178, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaOXA-1	100	831/831	ABOFBF010000207.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.guided.183, whole genome shotgun sequence	142..972	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Piperacillin, Piperacillin+Tazobactam	HQ170510	qnrB1	100	645/645	ABOFBF010000142.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.denovo.148, whole genome shotgun sequence	3121..3765	Ciprofloxacin	DQ351241	qnrB1	100	645/645	ABOFBF010000202.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.guided.146, whole genome shotgun sequence	3162..3806	Ciprofloxacin	DQ351241	sul2	100	816/816	ABOFBF010000144.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.denovo.150, whole genome shotgun sequence	1705..2520	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOFBF010000204.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.guided.168, whole genome shotgun sequence	149..964	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOFBF010000110.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.denovo.112, whole genome shotgun sequence	2162..3367	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	94.92	1200/1200	ABOFBF010000156.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.denovo.163, whole genome shotgun sequence	1526..2725	Doxycycline, Tetracycline	AJ517790	tet(B)	100	1206/1206	ABOFBF010000201.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.guided.141, whole genome shotgun sequence	2188..3393	Doxycycline, Tetracycline, Minocycline	AF326777	tet(A)	94.92	1200/1200	ABOFBF010000203.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.guided.162, whole genome shotgun sequence	1567..2766	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOFBF010000120.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.denovo.122, whole genome shotgun sequence	5401..5874	Trimethoprim	KF921535	dfrA14	100	474/474	ABOFBF010000205.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.guided.169, whole genome shotgun sequence	1690..2163	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																				enterobacteriales	IncX1	98.66	374 / 374	ABOFBF010000189.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313139 SAMN35713600-rid18365693.denovo.201, whole genome shotgun sequence	139..512																																																						avrA	ABOFBF010000010.1	93864..94733	99.885	870	0						
GCA_032899005.1_PDT001776599.1_genomic.fna	Salmonella_enterica	0.5205	263.279 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFBI010000001.1 Salmonella enterica strain PNUSAS355216 SAMN35713490-rid18363033.denovo.01, whole genome shotgun sequence	569676..570113	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFBI010000040.1 Salmonella enterica strain PNUSAS355216 SAMN35713490-rid18363033.denovo.44, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFBI010000040.1 Salmonella enterica strain PNUSAS355216 SAMN35713490-rid18363033.denovo.44, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOFBI010000059.1 Salmonella enterica strain PNUSAS355216 SAMN35713490-rid18363033.guided.36, whole genome shotgun sequence	3747..4184	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFBI010000060.1 Salmonella enterica strain PNUSAS355216 SAMN35713490-rid18363033.guided.43, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFBI010000060.1 Salmonella enterica strain PNUSAS355216 SAMN35713490-rid18363033.guided.43, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOFBI010000049.1 Salmonella enterica strain PNUSAS355216 SAMN35713490-rid18363033.denovo.55, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFBI010000062.1 Salmonella enterica strain PNUSAS355216 SAMN35713490-rid18363033.guided.54, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOFBI010000040.1 Salmonella enterica strain PNUSAS355216 SAMN35713490-rid18363033.denovo.44, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOFBI010000060.1 Salmonella enterica strain PNUSAS355216 SAMN35713490-rid18363033.guided.43, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOFBI010000034.1 Salmonella enterica strain PNUSAS355216 SAMN35713490-rid18363033.denovo.37, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFBI010000061.1 Salmonella enterica strain PNUSAS355216 SAMN35713490-rid18363033.guided.52, whole genome shotgun sequence	807..2012	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncY	99.74	765 / 765	ABOFBI010000014.1 Salmonella enterica strain PNUSAS355216 SAMN35713490-rid18363033.denovo.14, whole genome shotgun sequence	38912..39676																																																						avrA	ABOFBI010000002.1	467778..468647	99.885	870	0						
GCA_032899045.1_PDT001776597.1_genomic.fna	Salmonella_enterica	0.521	62.452 KB	24	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFBJ010000022.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313144 SAMN35713677-rid18361403.denovo.022, whole genome shotgun sequence	52320..52757	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFBJ010000108.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313144 SAMN35713677-rid18361403.denovo.111, whole genome shotgun sequence	3329..4165	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFBJ010000108.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313144 SAMN35713677-rid18361403.denovo.111, whole genome shotgun sequence	4165..4968	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOFBJ010000195.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313144 SAMN35713677-rid18361403.guided.076, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFBJ010000198.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313144 SAMN35713677-rid18361403.guided.117, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFBJ010000198.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313144 SAMN35713677-rid18361403.guided.117, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOFBJ010000135.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313144 SAMN35713677-rid18361403.denovo.139, whole genome shotgun sequence	2287..3492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFBJ010000199.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313144 SAMN35713677-rid18361403.guided.168, whole genome shotgun sequence	59..1264	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOFBJ010000132.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313144 SAMN35713677-rid18361403.denovo.136, whole genome shotgun sequence	1351..2032	enterobacteriales	IncFII	96.95	262 / 261	ABOFBJ010000108.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313144 SAMN35713677-rid18361403.denovo.111, whole genome shotgun sequence	2445..2706		enterobacteriales	IncFII	96.95	262 / 261	ABOFBJ010000198.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313144 SAMN35713677-rid18361403.guided.117, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOFBJ010000147.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313144 SAMN35713677-rid18361403.denovo.151, whole genome shotgun sequence	247..388		enterobacteriales	IncX1	100	373 / 373	ABOFBJ010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313144 SAMN35713677-rid18361403.denovo.146, whole genome shotgun sequence	1158..1530																											avrA	ABOFBJ010000083.1	13759..14628	99.655	870	0						
GCA_032899065.1_PDT001776596.1_genomic.fna	Salmonella_enterica	0.5204	210.633 KB	6	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOFBK010000001.1 Salmonella enterica strain PNUSAS355157 SAMN35713503-rid18364383.denovo.01, whole genome shotgun sequence	167933..168370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOFBK010000034.1 Salmonella enterica strain PNUSAS355157 SAMN35713503-rid18364383.guided.26, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFBK010000002.1	144854..145723	99.31	870	0						
GCA_032899085.1_PDT001776593.1_genomic.fna	Salmonella_enterica	0.5229	36.499 KB	41	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFBL010000012.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313225 SAMN35713708-rid18361383.denovo.012, whole genome shotgun sequence	12405..12842	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFBL010000227.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313225 SAMN35713708-rid18361383.guided.071, whole genome shotgun sequence	13915..14352	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOFBL010000109.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313225 SAMN35713708-rid18361383.denovo.112, whole genome shotgun sequence	1441..2586	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOFBL010000228.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313225 SAMN35713708-rid18361383.guided.111, whole genome shotgun sequence	1427..2572	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOFBL010000141.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313225 SAMN35713708-rid18361383.denovo.145, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOFBL010000230.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313225 SAMN35713708-rid18361383.guided.150, whole genome shotgun sequence	3336..4151	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOFBL010000141.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313225 SAMN35713708-rid18361383.denovo.145, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFBL010000230.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313225 SAMN35713708-rid18361383.guided.150, whole genome shotgun sequence	6328..7527	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFBL010000164.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313225 SAMN35713708-rid18361383.denovo.169, whole genome shotgun sequence	3134..3264	enterobacteriales	IncC	100	417 / 417	ABOFBL010000036.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313225 SAMN35713708-rid18361383.denovo.036, whole genome shotgun sequence	38349..38765																																																avrA	ABOFBL010000014.1	61696..62565	99.885	870	0						
GCA_032899105.1_PDT001776590.1_genomic.fna	Salmonella_enterica	0.5228	430.102 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOFBM010000001.1 Salmonella enterica strain PNUSAS355210 SAMN35713529-rid18363013.denovo.01, whole genome shotgun sequence	667191..667628	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOFBM010000024.1 Salmonella enterica strain PNUSAS355210 SAMN35713529-rid18363013.guided.18, whole genome shotgun sequence	10855..11292	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOFBM010000003.1	508581..509450	99.31	870	0						
GCA_032899125.1_PDT001776587.1_genomic.fna	Salmonella_enterica	0.5209	429.927 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFBP010000001.1 Salmonella enterica strain PNUSAS355208 SAMN35713477-rid18361363.denovo.01, whole genome shotgun sequence	1058657..1059094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFBP010000027.1 Salmonella enterica strain PNUSAS355208 SAMN35713477-rid18361363.guided.20, whole genome shotgun sequence	10492..10929	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOFBP010000014.1 Salmonella enterica strain PNUSAS355208 SAMN35713477-rid18361363.denovo.14, whole genome shotgun sequence	2740..3273																																																						avrA	ABOFBP010000011.1	93870..94740	99.196	871	0						
GCA_032899145.1_PDT001776583.1_genomic.fna	Salmonella_enterica	0.5217	182.354 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFBQ010000001.1 Salmonella enterica strain PNUSAS355167 SAMN35713499-rid18361343.denovo.01, whole genome shotgun sequence	145152..145589	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFBQ010000053.1 Salmonella enterica strain PNUSAS355167 SAMN35713499-rid18361343.guided.35, whole genome shotgun sequence	25758..26195	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOFBQ010000002.1	207908..208776	99.77	870	0						
GCA_032899165.1_PDT001776588.1_genomic.fna	Salmonella_enterica	0.5229	61.12 KB	27	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFBO010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313141 SAMN35713601-rid18362993.denovo.060, whole genome shotgun sequence	11361..11798	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFBO010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313141 SAMN35713601-rid18362993.denovo.066, whole genome shotgun sequence	22766..23557	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFBO010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313141 SAMN35713601-rid18362993.denovo.066, whole genome shotgun sequence	22766..23557	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOFBO010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313141 SAMN35713601-rid18362993.guided.082, whole genome shotgun sequence	15543..15980	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFBO010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313141 SAMN35713601-rid18362993.guided.093, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFBO010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313141 SAMN35713601-rid18362993.guided.093, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABOFBO010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313141 SAMN35713601-rid18362993.denovo.130, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOFBO010000169.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313141 SAMN35713601-rid18362993.guided.129, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABOFBO010000132.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313141 SAMN35713601-rid18362993.denovo.139, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABOFBO010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313141 SAMN35713601-rid18362993.guided.138, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABOFBO010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313141 SAMN35713601-rid18362993.denovo.066, whole genome shotgun sequence	21422..22261	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFBO010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313141 SAMN35713601-rid18362993.guided.093, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOFBO010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313141 SAMN35713601-rid18362993.denovo.066, whole genome shotgun sequence	7706..8905	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFBO010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313141 SAMN35713601-rid18362993.guided.100, whole genome shotgun sequence	2872..4071	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOFBO010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313141 SAMN35713601-rid18362993.denovo.120, whole genome shotgun sequence	2095..2654																																																						avrA	ABOFBO010000043.1	39524..40393	99.655	870	0						
GCA_032899185.1_PDT001776586.1_genomic.fna	Salmonella_enterica	0.5235	38.997 KB	33	aroC_115,dnaN_75,hemD_8,hisD_115,purE_2,sucA_116,thrA_110	314	-:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_115	dnaN	100	100	dnaN_75	hemD	100	100	hemD_8	hisD	100	100	hisD_115	purE	100	100	purE_2	sucA	100	100	sucA_116	thrA	100	100	thrA_110	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOFBR010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313199 SAMN35713531-rid18364363.denovo.041, whole genome shotgun sequence	17838..18275	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOFBR010000219.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313199 SAMN35713531-rid18364363.guided.094, whole genome shotgun sequence	15496..15933	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFBR010000074.1	19132..20001	98.851	870	0						
GCA_032899205.1_PDT001776589.1_genomic.fna	Salmonella_enterica	0.5151	203.237 KB	8	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	44:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	44	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 44:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABOFBN010000008.1 Salmonella enterica strain PNUSAS355217 SAMN35713491-rid18363003.denovo.08, whole genome shotgun sequence	4992..5429	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABOFBN010000084.1 Salmonella enterica strain PNUSAS355217 SAMN35713491-rid18363003.guided.33, whole genome shotgun sequence	1419..1856	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032899225.1_PDT001776582.1_genomic.fna	Salmonella_enterica	0.5207	68.43 KB	24	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFBS010000081.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313202 SAMN35713584-rid18361333.denovo.083, whole genome shotgun sequence	1582..2019	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFBS010000154.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313202 SAMN35713584-rid18361333.guided.082, whole genome shotgun sequence	14090..14527	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOFBS010000046.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313202 SAMN35713584-rid18361333.denovo.046, whole genome shotgun sequence	17991..18413	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOFBS010000155.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313202 SAMN35713584-rid18361333.guided.103, whole genome shotgun sequence	4817..5239	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	ABOFBS010000109.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313202 SAMN35713584-rid18361333.denovo.113, whole genome shotgun sequence	2788..3993	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFBS010000157.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313202 SAMN35713584-rid18361333.guided.114, whole genome shotgun sequence	2819..4024	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOFBS010000099.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313202 SAMN35713584-rid18361333.denovo.101, whole genome shotgun sequence	4698..4839																																																						avrA	ABOFBS010000006.1	95840..96709	99.195	870	0						
GCA_032899265.1_PDT001776580.1_genomic.fna	Salmonella_enterica	0.5228	46.398 KB	30	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	Col(pHAD28),ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFBU010000062.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313137 SAMN35713598-rid18362983.denovo.063, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFBU010000169.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313137 SAMN35713598-rid18362983.guided.092, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOFBU010000131.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313137 SAMN35713598-rid18362983.denovo.134, whole genome shotgun sequence	371..501	enterobacteriales	ColpVC	98.96	193 / 193	ABOFBU010000142.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313137 SAMN35713598-rid18362983.denovo.145, whole genome shotgun sequence	805..997																																																avrA	ABOFBU010000013.1	61666..62535	99.885	870	0						
GCA_032899285.1_PDT001776579.1_genomic.fna	Salmonella_enterica	0.5211	406.453 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFBV010000001.1 Salmonella enterica strain PNUSAS355196 SAMN35713526-rid18362973.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFBV010000028.1 Salmonella enterica strain PNUSAS355196 SAMN35713526-rid18362973.guided.20, whole genome shotgun sequence	11935..12372	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFBV010000019.1 Salmonella enterica strain PNUSAS355196 SAMN35713526-rid18362973.denovo.21, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABOFBV010000021.1 Salmonella enterica strain PNUSAS355196 SAMN35713526-rid18362973.denovo.24, whole genome shotgun sequence	3394..3655																																																avrA	ABOFBV010000002.1	553546..554415	99.54	870	0						
GCA_032899305.1_PDT001776576.1_genomic.fna	Salmonella_enterica	0.5209	405.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFBW010000001.1 Salmonella enterica strain PNUSAS355204 SAMN35713479-rid18364343.denovo.01, whole genome shotgun sequence	774368..774805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFBW010000023.1 Salmonella enterica strain PNUSAS355204 SAMN35713479-rid18364343.guided.13, whole genome shotgun sequence	20154..20591	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFBW010000016.1 Salmonella enterica strain PNUSAS355204 SAMN35713479-rid18364343.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOFBW010000017.1 Salmonella enterica strain PNUSAS355204 SAMN35713479-rid18364343.denovo.20, whole genome shotgun sequence	3397..3658																																																avrA	ABOFBW010000002.1	553630..554499	99.54	870	0						
GCA_032899325.1_PDT001776575.1_genomic.fna	Salmonella_enterica	0.5214	436.04 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFBX010000002.1 Salmonella enterica strain PNUSAS355162 SAMN35713496-rid18362953.denovo.02, whole genome shotgun sequence	170049..170486	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFBX010000031.1 Salmonella enterica strain PNUSAS355162 SAMN35713496-rid18362953.guided.18, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032899345.1_PDT001776573.1_genomic.fna	Salmonella_enterica	0.5217	223.434 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFBZ010000001.1 Salmonella enterica strain PNUSAS355197 SAMN35713532-rid18362943.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(S)	100	643 / 643	ABOFBZ010000027.1 Salmonella enterica strain PNUSAS355197 SAMN35713532-rid18362943.denovo.27, whole genome shotgun sequence	44723..45365	enterobacteriales	IncFII(S)	100	262 / 262	ABOFBZ010000027.1 Salmonella enterica strain PNUSAS355197 SAMN35713532-rid18362943.denovo.27, whole genome shotgun sequence	29377..29638		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOFBZ010000022.1 Salmonella enterica strain PNUSAS355197 SAMN35713532-rid18362943.denovo.22, whole genome shotgun sequence	68204..68345																																									avrA	ABOFBZ010000008.1	155216..156084	100	869	0						
GCA_032899365.1_PDT001776574.1_genomic.fna	Salmonella_enterica	0.5217	67.08 KB	21	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFBY010000011.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313200 SAMN35713535-rid18365663.denovo.011, whole genome shotgun sequence	62378..62815	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOFBY010000061.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313200 SAMN35713535-rid18365663.denovo.061, whole genome shotgun sequence	6190..6992	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOFBY010000061.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313200 SAMN35713535-rid18365663.denovo.061, whole genome shotgun sequence	6190..6993	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOFBY010000061.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313200 SAMN35713535-rid18365663.denovo.061, whole genome shotgun sequence	6190..6993	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOFBY010000061.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313200 SAMN35713535-rid18365663.denovo.061, whole genome shotgun sequence	6190..6993	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOFBY010000061.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313200 SAMN35713535-rid18365663.denovo.061, whole genome shotgun sequence	5450..6190	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOFBY010000061.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313200 SAMN35713535-rid18365663.denovo.061, whole genome shotgun sequence	5450..6190	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABOFBY010000153.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313200 SAMN35713535-rid18365663.guided.066, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOFBY010000155.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313200 SAMN35713535-rid18365663.guided.099, whole genome shotgun sequence	2617..3419	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOFBY010000155.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313200 SAMN35713535-rid18365663.guided.099, whole genome shotgun sequence	2616..3419	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOFBY010000155.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313200 SAMN35713535-rid18365663.guided.099, whole genome shotgun sequence	2616..3419	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOFBY010000155.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313200 SAMN35713535-rid18365663.guided.099, whole genome shotgun sequence	2616..3419	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOFBY010000155.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313200 SAMN35713535-rid18365663.guided.099, whole genome shotgun sequence	3419..4159	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOFBY010000155.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313200 SAMN35713535-rid18365663.guided.099, whole genome shotgun sequence	3419..4159	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOFBY010000104.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313200 SAMN35713535-rid18365663.denovo.108, whole genome shotgun sequence	2153..2834	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABOFBY010000075.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313200 SAMN35713535-rid18365663.denovo.076, whole genome shotgun sequence	4597..5093																																																avrA	ABOFBY010000022.1	61533..62402	98.966	870	0						
GCA_032899385.1_PDT001776572.1_genomic.fna	Salmonella_enterica	0.5214	489.532 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFCA010000001.1 Salmonella enterica strain PNUSAS355221 SAMN35713487-rid18361313.denovo.01, whole genome shotgun sequence	293195..293632	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFCA010000025.1 Salmonella enterica strain PNUSAS355221 SAMN35713487-rid18361313.guided.19, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFCA010000018.1 Salmonella enterica strain PNUSAS355221 SAMN35713487-rid18361313.denovo.21, whole genome shotgun sequence	6836..7478	enterobacteriales	IncFII(S)	100	262 / 262	ABOFCA010000015.1 Salmonella enterica strain PNUSAS355221 SAMN35713487-rid18361313.denovo.15, whole genome shotgun sequence	3859..4120																																																avrA	ABOFCA010000002.1	552784..553653	99.54	870	0						
GCA_032899405.1_PDT001776571.1_genomic.fna	Salmonella_enterica	0.5204	158.283 KB	9	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncY	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFCB010000003.1 Salmonella enterica strain PNUSAS355195 SAMN35713540-rid18364333.denovo.03, whole genome shotgun sequence	38147..38584	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFCB010000056.1 Salmonella enterica strain PNUSAS355195 SAMN35713540-rid18364333.guided.38, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOFCB010000029.1 Salmonella enterica strain PNUSAS355195 SAMN35713540-rid18364333.denovo.29, whole genome shotgun sequence	34958..35491	enterobacteriales	IncY	99.08	765 / 765	ABOFCB010000023.1 Salmonella enterica strain PNUSAS355195 SAMN35713540-rid18364333.denovo.23, whole genome shotgun sequence	65938..66702																																																avrA	ABOFCB010000014.1	93989..94858	99.54	870	0						
GCA_032899445.1_PDT001776570.1_genomic.fna	Salmonella_enterica	0.5208	223.93 KB	8	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFCC010000013.1 Salmonella enterica strain PNUSAS355156 SAMN35713502-rid18362933.denovo.13, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFCC010000055.1 Salmonella enterica strain PNUSAS355156 SAMN35713502-rid18362933.guided.30, whole genome shotgun sequence	1244..1681	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOFCC010000023.1 Salmonella enterica strain PNUSAS355156 SAMN35713502-rid18362933.denovo.23, whole genome shotgun sequence	34957..35490																																																						avrA	ABOFCC010000011.1	39596..40462	98.966	870	0						
GCA_032899465.1_PDT001776568.1_genomic.fna	Salmonella_enterica	0.522	228.221 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFCE010000001.1 Salmonella enterica strain PNUSAS355209 SAMN35713523-rid18362923.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFCE010000046.1 Salmonella enterica strain PNUSAS355209 SAMN35713523-rid18362923.guided.28, whole genome shotgun sequence	36837..37274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOFCE010000019.1 Salmonella enterica strain PNUSAS355209 SAMN35713523-rid18362923.denovo.19, whole genome shotgun sequence	86328..86970	enterobacteriales	IncFII(S)	100	262 / 262	ABOFCE010000019.1 Salmonella enterica strain PNUSAS355209 SAMN35713523-rid18362923.denovo.19, whole genome shotgun sequence	70982..71243																																																avrA	ABOFCE010000002.1	209589..210457	100	869	0						
GCA_032899485.1_PDT001949006.1_genomic.fna	Salmonella_enterica	0.5217	100.372 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFCF010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325841 SAMN37905817-rid19915973.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFCF010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325841 SAMN37905817-rid19915973.denovo.44, whole genome shotgun sequence	22742..23533	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFCF010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325841 SAMN37905817-rid19915973.denovo.44, whole genome shotgun sequence	22742..23533	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOFCF010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325841 SAMN37905817-rid19915973.denovo.86, whole genome shotgun sequence	92..907	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	X62115	aac(6')-Iaa	97.49	438/438	ABOFCF010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325841 SAMN37905817-rid19915973.guided.56, whole genome shotgun sequence	2242..2679	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFCF010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325841 SAMN37905817-rid19915973.guided.70, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFCF010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325841 SAMN37905817-rid19915973.guided.70, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOFCF010000091.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325841 SAMN37905817-rid19915973.guided.85, whole genome shotgun sequence	70..885	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	X62115	sul1	100	840/840	ABOFCF010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325841 SAMN37905817-rid19915973.denovo.44, whole genome shotgun sequence	21398..22237	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFCF010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325841 SAMN37905817-rid19915973.guided.70, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOFCF010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325841 SAMN37905817-rid19915973.denovo.44, whole genome shotgun sequence	7682..8881	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFCF010000088.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325841 SAMN37905817-rid19915973.guided.61, whole genome shotgun sequence	1894..3093	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOFCF010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325841 SAMN37905817-rid19915973.denovo.68, whole genome shotgun sequence	1588..2061	Trimethoprim	AF393510	dfrA14	100	474/474	ABOFCF010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325841 SAMN37905817-rid19915973.guided.73, whole genome shotgun sequence	1421..1894	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOFCF010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325841 SAMN37905817-rid19915973.denovo.54, whole genome shotgun sequence	14638..15197																																																						avrA	ABOFCF010000018.1	28858..29727	99.655	870	0						
GCA_032899505.1_PDT001949004.1_genomic.fna	Salmonella_enterica	0.5213	112.062 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFCH010000005.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325840 SAMN37905816-rid19915953.denovo.05, whole genome shotgun sequence	50955..51392	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFCH010000097.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325840 SAMN37905816-rid19915953.guided.63, whole genome shotgun sequence	12082..12519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFCH010000069.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325840 SAMN37905816-rid19915953.denovo.72, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOFCH010000071.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325840 SAMN37905816-rid19915953.denovo.74, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	98.93	374 / 374	ABOFCH010000040.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325840 SAMN37905816-rid19915953.denovo.40, whole genome shotgun sequence	32011..32384																																									avrA	ABOFCH010000014.1	43667..44536	99.54	870	0						
GCA_032899525.1_PDT001949001.1_genomic.fna	Salmonella_enterica	0.5213	84.759 KB	19	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	-:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOFCI010000027.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325833 SAMN37905814-rid19915923.denovo.027, whole genome shotgun sequence	44480..44917	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABOFCI010000105.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325833 SAMN37905814-rid19915923.guided.083, whole genome shotgun sequence	2238..2675	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFCI010000037.1	25024..25893	99.31	870	0						
GCA_032899545.1_PDT001949002.1_genomic.fna	Salmonella_enterica	0.5225	100.891 KB	15	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFCG010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325835 SAMN37905812-rid19915933.denovo.01, whole genome shotgun sequence	238565..239002	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFCG010000097.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325835 SAMN37905812-rid19915933.guided.56, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABOFCG010000077.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325835 SAMN37905812-rid19915933.denovo.81, whole genome shotgun sequence	2246..2354	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOFCG010000035.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325835 SAMN37905812-rid19915933.denovo.35, whole genome shotgun sequence	37411..37552																																																											
GCA_032899565.1_PDT001949000.1_genomic.fna	Salmonella_enterica	0.522	51.353 KB	30	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFCJ010000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325837 SAMN37905813-rid19915913.denovo.022, whole genome shotgun sequence	12516..12953	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFCJ010000178.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325837 SAMN37905813-rid19915913.guided.096, whole genome shotgun sequence	15453..15890	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABOFCJ010000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325837 SAMN37905813-rid19915913.denovo.030, whole genome shotgun sequence	45489..46304	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOFCJ010000180.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325837 SAMN37905813-rid19915913.guided.117, whole genome shotgun sequence	3132..3947	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOFCJ010000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325837 SAMN37905813-rid19915913.denovo.030, whole genome shotgun sequence	48481..49680	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFCJ010000180.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325837 SAMN37905813-rid19915913.guided.117, whole genome shotgun sequence	6124..7323	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOFCJ010000137.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325837 SAMN37905813-rid19915913.denovo.141, whole genome shotgun sequence	371..501	enterobacteriales	IncX1	98.4	374 / 374	ABOFCJ010000149.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325837 SAMN37905813-rid19915913.denovo.153, whole genome shotgun sequence	865..1238																																																avrA	ABOFCJ010000009.1	61657..62526	99.885	870	0						
GCA_032899665.1_PDT001776567.1_genomic.fna	Salmonella_enterica	0.5238	66.705 KB	23	aroC_5,dnaN_36*,hemD_87,hisD_103,purE_29,sucA_108,thrA_102	286*	-:z29:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	99.8003992015968	100	dnaN_36*	hemD	100	100	hemD_87	hisD	100	100	hisD_103	purE	100	100	purE_29	sucA	100	100	sucA_108	thrA	100	100	thrA_102	-	z29	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z29:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOFCP010000020.1 Salmonella enterica subsp. enterica serovar Cubana strain FSIS22313197 SAMN35713483-rid18361303.denovo.020, whole genome shotgun sequence	52318..52755	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOFCP010000160.1 Salmonella enterica subsp. enterica serovar Cubana strain FSIS22313197 SAMN35713483-rid18361303.guided.096, whole genome shotgun sequence	8050..8487	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFCP010000015.1	82005..82874	99.195	870	0						
GCA_032899685.1_PDT001776566.1_genomic.fna	Salmonella_enterica	0.5211	350.401 KB	5	aroC_18*,dnaN_14,hemD_12,hisD_9,purE_5,sucA_18,thrA_21	36*	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	99.8003992015968	100	aroC_18*	dnaN	100	100	dnaN_14	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_18	thrA	100	100	thrA_21	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFCO010000001.1 Salmonella enterica strain PNUSAS355161 SAMN35713497-rid18364313.denovo.01, whole genome shotgun sequence	287867..288304	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFCO010000030.1 Salmonella enterica strain PNUSAS355161 SAMN35713497-rid18364313.guided.23, whole genome shotgun sequence	8823..9260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOFCO010000006.1	174489..175358	99.885	870	0						
GCA_032899705.1_PDT001776565.1_genomic.fna	Salmonella_enterica	0.5208	300.448 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOFCQ010000001.1 Salmonella enterica strain PNUSAS355219 SAMN35713488-rid18361293.denovo.01, whole genome shotgun sequence	267093..267530	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOFCQ010000023.1 Salmonella enterica strain PNUSAS355219 SAMN35713488-rid18361293.guided.19, whole genome shotgun sequence	2145..2582	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOFCQ010000002.1	160309..161178	99.54	870	0						
GCA_032899725.1_PDT001776564.1_genomic.fna	Salmonella_enterica	0.5201	297.38 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFCR010000001.1 Salmonella enterica strain PNUSAS355171 SAMN35713505-rid18365653.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFCR010000027.1 Salmonella enterica strain PNUSAS355171 SAMN35713505-rid18365653.guided.15, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABOFCR010000017.1 Salmonella enterica strain PNUSAS355171 SAMN35713505-rid18365653.denovo.19, whole genome shotgun sequence	6868..7241																																																						avrA	ABOFCR010000007.1	175109..175978	99.54	870	0						
GCA_032899745.1_PDT001776563.1_genomic.fna	Salmonella_enterica	0.5203	257.544 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI2	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFCS010000001.1 Salmonella enterica strain PNUSAS355203 SAMN35713546-rid18361283.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFCS010000048.1 Salmonella enterica strain PNUSAS355203 SAMN35713546-rid18361283.guided.31, whole genome shotgun sequence	24942..25379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOFCS010000023.1 Salmonella enterica strain PNUSAS355203 SAMN35713546-rid18361283.denovo.23, whole genome shotgun sequence	44740..45382	enterobacteriales	IncFII(S)	100	262 / 262	ABOFCS010000023.1 Salmonella enterica strain PNUSAS355203 SAMN35713546-rid18361283.denovo.23, whole genome shotgun sequence	29394..29655		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOFCS010000019.1 Salmonella enterica strain PNUSAS355203 SAMN35713546-rid18361283.denovo.19, whole genome shotgun sequence	71638..71779		enterobacteriales	IncI2	99.38	324 / 324	ABOFCS010000029.1 Salmonella enterica strain PNUSAS355203 SAMN35713546-rid18361283.denovo.30, whole genome shotgun sequence	4706..5029																																		avrA	ABOFCS010000003.1	209589..210457	100	869	0						
GCA_032899765.1_PDT001776562.1_genomic.fna	Salmonella_enterica	0.5232	60.903 KB	27	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOFCT010000050.1 Salmonella enterica subsp. enterica serovar Berta strain FSIS22313198 SAMN35713528-rid18361273.denovo.050, whole genome shotgun sequence	15423..15860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOFCT010000158.1 Salmonella enterica subsp. enterica serovar Berta strain FSIS22313198 SAMN35713528-rid18361273.guided.072, whole genome shotgun sequence	8088..8525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOFCT010000117.1 Salmonella enterica subsp. enterica serovar Berta strain FSIS22313198 SAMN35713528-rid18361273.denovo.120, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABOFCT010000123.1 Salmonella enterica subsp. enterica serovar Berta strain FSIS22313198 SAMN35713528-rid18361273.denovo.126, whole genome shotgun sequence	2528..2639		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOFCT010000011.1 Salmonella enterica subsp. enterica serovar Berta strain FSIS22313198 SAMN35713528-rid18361273.denovo.011, whole genome shotgun sequence	81997..82138																																									avrA	ABOFCT010000002.1	148598..149466	99.425	870	0						
GCA_032899785.1_PDT001776559.1_genomic.fna	Salmonella_enterica	0.5185	392.997 KB	4	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	7	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,blaTEM-1B,blaSHV-12,blaTEM-1B,blaSHV-12,floR,catA2,floR,catA2,sul2,sul2	1	parC_p.T57S	3	Col(pHAD28),IncHI2,IncHI2A	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOFCV010000001.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.denovo.01, whole genome shotgun sequence	779171..779608	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOFCV010000034.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.denovo.38, whole genome shotgun sequence	103..918	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EU855787	aac(6')-Iaa	98.86	438/438	ABOFCV010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.guided.24, whole genome shotgun sequence	10215..10652	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOFCV010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.guided.37, whole genome shotgun sequence	144..959	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EU855787	blaTEM-1B	100	861/861	ABOFCV010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.denovo.12, whole genome shotgun sequence	7869..8729	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaSHV-12	100	861/861	ABOFCV010000033.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.denovo.36, whole genome shotgun sequence	3527..4387	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	KF976405	blaTEM-1B	100	861/861	ABOFCV010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.guided.33, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaSHV-12	100	861/861	ABOFCV010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.guided.48, whole genome shotgun sequence	113..973	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	KF976405	floR	98.19	1214/1215	ABOFCV010000029.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.denovo.31, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	catA2	96.11	642/642	ABOFCV010000040.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.denovo.50, whole genome shotgun sequence	91..732	Chloramphenicol	X53796	floR	98.19	1214/1215	ABOFCV010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.guided.42, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	catA2	96.11	642/642	ABOFCV010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.guided.49, whole genome shotgun sequence	707..1348	Chloramphenicol	X53796	sul2	100	816/816	ABOFCV010000028.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.denovo.30, whole genome shotgun sequence	329..1144	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOFCV010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.guided.47, whole genome shotgun sequence	459..1274	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFCV010000038.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.denovo.45, whole genome shotgun sequence	1708..1838	enterobacteriales	IncHI2	99.69	327 / 327	ABOFCV010000018.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.denovo.18, whole genome shotgun sequence	20954..21280		enterobacteriales	IncHI2A	100	630 / 630	ABOFCV010000018.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313218 SAMN35713587-rid18365313.denovo.18, whole genome shotgun sequence	36146..36775																																									avrA	ABOFCV010000002.1	176079..176948	99.31	870	0						
GCA_032899805.1_PDT001776561.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFCU010000001.1 Salmonella enterica strain PNUSAS355215 SAMN35713486-rid18364303.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFCU010000027.1 Salmonella enterica strain PNUSAS355215 SAMN35713486-rid18364303.guided.19, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFCU010000014.1 Salmonella enterica strain PNUSAS355215 SAMN35713486-rid18364303.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOFCU010000014.1 Salmonella enterica strain PNUSAS355215 SAMN35713486-rid18364303.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABOFCU010000002.1	553648..554517	99.54	870	0						
GCA_032899825.1_PDT001776558.1_genomic.fna	Salmonella_enterica	0.5208	158.263 KB	9	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFCX010000004.1 Salmonella enterica strain PNUSAS355160 SAMN35713508-rid18362913.denovo.04, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFCX010000050.1 Salmonella enterica strain PNUSAS355160 SAMN35713508-rid18362913.guided.39, whole genome shotgun sequence	8806..9243	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOFCX010000024.1 Salmonella enterica strain PNUSAS355160 SAMN35713508-rid18362913.denovo.24, whole genome shotgun sequence	2806..3339																																																						avrA	ABOFCX010000013.1	93988..94857	99.425	870	0						
GCA_032899845.1_PDT001776557.1_genomic.fna	Salmonella_enterica	0.5214	478.681 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFCW010000001.1 Salmonella enterica strain PNUSAS355198 SAMN35713544-rid18361253.denovo.01, whole genome shotgun sequence	770049..770486	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFCW010000030.1 Salmonella enterica strain PNUSAS355198 SAMN35713544-rid18361253.guided.20, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFCW010000017.1 Salmonella enterica strain PNUSAS355198 SAMN35713544-rid18361253.denovo.18, whole genome shotgun sequence	6835..7477	enterobacteriales	IncFII(S)	100	262 / 262	ABOFCW010000019.1 Salmonella enterica strain PNUSAS355198 SAMN35713544-rid18361253.denovo.22, whole genome shotgun sequence	3397..3658																																																avrA	ABOFCW010000002.1	553678..554547	99.54	870	0						
GCA_032899865.1_PDT001776556.1_genomic.fna	Salmonella_enterica	0.5212	406.453 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFCY010000001.1 Salmonella enterica strain PNUSAS355212 SAMN35713541-rid18364293.denovo.01, whole genome shotgun sequence	199594..200031	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFCY010000030.1 Salmonella enterica strain PNUSAS355212 SAMN35713541-rid18364293.guided.26, whole genome shotgun sequence	664..1101	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFCY010000020.1 Salmonella enterica strain PNUSAS355212 SAMN35713541-rid18364293.denovo.21, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABOFCY010000021.1 Salmonella enterica strain PNUSAS355212 SAMN35713541-rid18364293.denovo.23, whole genome shotgun sequence	3384..3645																																																avrA	ABOFCY010000002.1	553678..554547	99.54	870	0						
GCA_032899885.1_PDT001776555.1_genomic.fna	Salmonella_enterica	0.5236	51.713 KB	32	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFCZ010000016.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.denovo.016, whole genome shotgun sequence	12566..13003	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFCZ010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.denovo.069, whole genome shotgun sequence	23018..23809	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFCZ010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.denovo.069, whole genome shotgun sequence	23018..23809	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOFCZ010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.denovo.139, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOFCZ010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.denovo.139, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOFCZ010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.guided.051, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFCZ010000191.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.guided.127, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFCZ010000191.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.guided.127, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOFCZ010000192.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.guided.137, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOFCZ010000192.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.guided.137, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOFCZ010000143.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.denovo.150, whole genome shotgun sequence	922..1797	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOFCZ010000193.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.guided.149, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABOFCZ010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.denovo.069, whole genome shotgun sequence	21674..22513	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFCZ010000191.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.guided.127, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOFCZ010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.denovo.069, whole genome shotgun sequence	7958..9157	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFCZ010000190.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.guided.110, whole genome shotgun sequence	7837..9036	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOFCZ010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313201 SAMN35713538-rid18361243.denovo.125, whole genome shotgun sequence	5353..5912																																																						avrA	ABOFCZ010000043.1	39693..40562	99.655	870	0						
GCA_032899905.1_PDT001776551.1_genomic.fna	Salmonella_enterica	0.522	298.935 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFDA010000001.1 Salmonella enterica strain PNUSAS355205 SAMN35713545-rid18364283.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFDA010000039.1 Salmonella enterica strain PNUSAS355205 SAMN35713545-rid18364283.guided.26, whole genome shotgun sequence	6257..6694	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFDA010000006.1	147026..147895	98.966	870	0						
GCA_032899925.1_PDT001776550.1_genomic.fna	Salmonella_enterica	0.5211	412.518 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFDC010000001.1 Salmonella enterica strain PNUSAS355166 SAMN35713500-rid18360423.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFDC010000031.1 Salmonella enterica strain PNUSAS355166 SAMN35713500-rid18360423.guided.21, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFDC010000022.1 Salmonella enterica strain PNUSAS355166 SAMN35713500-rid18360423.denovo.25, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOFDC010000019.1 Salmonella enterica strain PNUSAS355166 SAMN35713500-rid18360423.denovo.20, whole genome shotgun sequence	4101..4362																																																avrA	ABOFDC010000002.1	552995..553864	99.54	870	0						
GCA_032899945.1_PDT001776552.1_genomic.fna	Salmonella_enterica	0.5207	216.195 KB	8	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFDB010000001.1 Salmonella enterica strain PNUSAS355163 SAMN35713495-rid18360433.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFDB010000045.1 Salmonella enterica strain PNUSAS355163 SAMN35713495-rid18360433.guided.33, whole genome shotgun sequence	10688..11125	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOFDB010000022.1 Salmonella enterica strain PNUSAS355163 SAMN35713495-rid18360433.denovo.22, whole genome shotgun sequence	5891..6424																																																						avrA	ABOFDB010000007.1	188563..189432	99.425	870	0						
GCA_032899965.1_PDT001776548.1_genomic.fna	Salmonella_enterica	0.5218	271.33 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFDE010000002.1 Salmonella enterica strain PNUSAS355170 SAMN35713492-rid18361233.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFDE010000053.1 Salmonella enterica strain PNUSAS355170 SAMN35713492-rid18361233.guided.35, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOFDE010000021.1 Salmonella enterica strain PNUSAS355170 SAMN35713492-rid18361233.denovo.21, whole genome shotgun sequence	44716..45358	enterobacteriales	IncFII(S)	100	262 / 262	ABOFDE010000021.1 Salmonella enterica strain PNUSAS355170 SAMN35713492-rid18361233.denovo.21, whole genome shotgun sequence	29370..29631																																																avrA	ABOFDE010000004.1	155216..156084	100	869	0						
GCA_032899985.1_PDT001776549.1_genomic.fna	Salmonella_enterica	0.5216	394.631 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOFDD010000001.1 Salmonella enterica strain PNUSAS355199 SAMN35713537-rid18365643.denovo.01, whole genome shotgun sequence	639284..639721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOFDD010000035.1 Salmonella enterica strain PNUSAS355199 SAMN35713537-rid18365643.guided.20, whole genome shotgun sequence	9682..10119	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFDD010000002.1	530712..531580	99.425	870	0						
GCA_032900025.1_PDT001776542.1_genomic.fna	Salmonella_enterica	0.5227	56.326 KB	27	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX4	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFDH010000020.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313196 SAMN35713481-rid18360413.denovo.020, whole genome shotgun sequence	11361..11798	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOFDH010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313196 SAMN35713481-rid18360413.denovo.124, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOFDH010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313196 SAMN35713481-rid18360413.denovo.124, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOFDH010000168.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313196 SAMN35713481-rid18360413.denovo.174, whole genome shotgun sequence	93..908	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aac(6')-Iaa	97.49	438/438	ABOFDH010000184.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313196 SAMN35713481-rid18360413.guided.076, whole genome shotgun sequence	9243..9680	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOFDH010000186.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313196 SAMN35713481-rid18360413.guided.130, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOFDH010000186.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313196 SAMN35713481-rid18360413.guided.130, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOFDH010000188.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313196 SAMN35713481-rid18360413.guided.170, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	dfrA14	100	474/474	ABOFDH010000132.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313196 SAMN35713481-rid18360413.denovo.136, whole genome shotgun sequence	65..538	Trimethoprim	AF393510	dfrA14	100	474/474	ABOFDH010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313196 SAMN35713481-rid18360413.guided.147, whole genome shotgun sequence	96..569	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOFDH010000122.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313196 SAMN35713481-rid18360413.denovo.125, whole genome shotgun sequence	2153..2712	enterobacteriales	IncX4	100	374 / 374	ABOFDH010000173.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313196 SAMN35713481-rid18360413.denovo.179, whole genome shotgun sequence	150..523																																																avrA	ABOFDH010000001.1	124288..125157	99.655	870	0						
GCA_032900045.1_PDT001776547.1_genomic.fna	Salmonella_enterica	0.5227	263.407 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFDF010000001.1 Salmonella enterica strain PNUSAS355164 SAMN35713494-rid18361223.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOFDF010000039.1 Salmonella enterica strain PNUSAS355164 SAMN35713494-rid18361223.guided.30, whole genome shotgun sequence	3467..3904	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFDF010000002.1	39540..40409	99.655	870	0						
GCA_032900065.1_PDT001776541.1_genomic.fna	Salmonella_enterica	0.5216	56.803 KB	27	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	3	aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aph(6)-Id	100	837/837	ABOFDJ010000107.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313221 SAMN35713239-rid18364263.denovo.109, whole genome shotgun sequence	5774..6610	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFDJ010000107.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313221 SAMN35713239-rid18364263.denovo.109, whole genome shotgun sequence	6610..7413	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOFDJ010000200.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313221 SAMN35713239-rid18364263.guided.122, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFDJ010000200.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313221 SAMN35713239-rid18364263.guided.122, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOFDJ010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313221 SAMN35713239-rid18364263.denovo.145, whole genome shotgun sequence	1774..2979	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFDJ010000201.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313221 SAMN35713239-rid18364263.guided.149, whole genome shotgun sequence	1805..3010	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOFDJ010000130.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313221 SAMN35713239-rid18364263.denovo.133, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOFDJ010000107.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313221 SAMN35713239-rid18364263.denovo.109, whole genome shotgun sequence	4890..5151		enterobacteriales	IncFII	96.95	262 / 261	ABOFDJ010000200.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313221 SAMN35713239-rid18364263.guided.122, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOFDJ010000144.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313221 SAMN35713239-rid18364263.denovo.147, whole genome shotgun sequence	2732..3104																																		avrA	ABOFDJ010000041.1	39612..40481	99.655	870	0						
GCA_032900085.1_PDT001776540.1_genomic.fna	Salmonella_enterica	0.5206	285.214 KB	6	aroC_13,dnaN_11,hemD_25,hisD_72,purE_10,sucA_23,thrA_23	419	4:a:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	4	a	1,7	Salmonella enterica subspecies enterica (subspecies I)	Arechavaleta		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFDI010000002.1 Salmonella enterica strain PNUSAS355222 SAMN35713489-rid18360403.denovo.02, whole genome shotgun sequence	152230..152667	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFDI010000038.1 Salmonella enterica strain PNUSAS355222 SAMN35713489-rid18360403.guided.30, whole genome shotgun sequence	1236..1673	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFDI010000001.1	39342..40211	99.54	870	0						
GCA_032900105.1_PDT001776536.1_genomic.fna	Salmonella_enterica	0.5227	333.73 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFDM010000001.1 Salmonella enterica strain PNUSAS355223 SAMN35713482-rid18364253.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFDM010000026.1 Salmonella enterica strain PNUSAS355223 SAMN35713482-rid18364253.guided.20, whole genome shotgun sequence	8799..9236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFDM010000005.1	129887..130756	98.966	870	0						
GCA_032900125.1_PDT001776539.1_genomic.fna	Salmonella_enterica	0.5163	376.44 KB	6	aroC_33,dnaN_26,hemD_30,hisD_282,purE_229,sucA_87,thrA_28	2374	50:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_282	purE	100	100	purE_229	sucA	100	100	sucA_87	thrA	100	100	thrA_28	50	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 50:r:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOFDK010000011.1 Salmonella enterica strain PNUSAS355201 SAMN35713543-rid18365303.denovo.11, whole genome shotgun sequence	95627..96064	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOFDK010000056.1 Salmonella enterica strain PNUSAS355201 SAMN35713543-rid18365303.guided.34, whole genome shotgun sequence	2503..2940	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFDK010000007.1	189968..190837	96.552	870	0						
GCA_032900145.1_PDT001776537.1_genomic.fna	Salmonella_enterica	0.522	335.447 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFDL010000001.1 Salmonella enterica strain PNUSAS355206 SAMN35713475-rid18365633.denovo.01, whole genome shotgun sequence	454798..455235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFDL010000042.1 Salmonella enterica strain PNUSAS355206 SAMN35713475-rid18365633.guided.27, whole genome shotgun sequence	6809..7246	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOFDL010000026.1 Salmonella enterica strain PNUSAS355206 SAMN35713475-rid18365633.denovo.30, whole genome shotgun sequence	1506..1636	enterobacteriales	IncI1-I(Alpha)	94.93	138 / 142	ABOFDL010000017.1 Salmonella enterica strain PNUSAS355206 SAMN35713475-rid18365633.denovo.17, whole genome shotgun sequence	67977..68112																																																avrA	ABOFDL010000008.1	39488..40357	98.966	870	0						
GCA_032900165.1_PDT001776535.1_genomic.fna	Salmonella_enterica	0.5215	225.555 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFDN010000001.1 Salmonella enterica strain PNUSAS355158 SAMN35713504-rid18361193.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFDN010000054.1 Salmonella enterica strain PNUSAS355158 SAMN35713504-rid18361193.guided.28, whole genome shotgun sequence	183..620	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOFDN010000025.1 Salmonella enterica strain PNUSAS355158 SAMN35713504-rid18361193.denovo.25, whole genome shotgun sequence	44728..45370	enterobacteriales	IncFII(S)	100	262 / 262	ABOFDN010000025.1 Salmonella enterica strain PNUSAS355158 SAMN35713504-rid18361193.denovo.25, whole genome shotgun sequence	29382..29643																																																avrA	ABOFDN010000009.1	155205..156073	100	869	0						
GCA_032900185.1_PDT001776534.1_genomic.fna	Salmonella_enterica	0.5208	183.317 KB	8	aroC_161,dnaN_931,hemD_877,hisD_1319,purE_1043,sucA_119,thrA_1097	6574	9:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_161	dnaN	100	100	dnaN_931	hemD	100	100	hemD_877	hisD	100	100	hisD_1319	purE	100	100	purE_1043	sucA	100	100	sucA_119	thrA	100	100	thrA_1097	9	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Yellowknife		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFDO010000001.1 Salmonella enterica strain PNUSAS355220 SAMN35713484-rid18362863.denovo.01, whole genome shotgun sequence	345478..345915	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFDO010000047.1 Salmonella enterica strain PNUSAS355220 SAMN35713484-rid18362863.guided.35, whole genome shotgun sequence	10100..10537	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032900205.1_PDT001776533.1_genomic.fna	Salmonella_enterica	0.5192	435.26 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_503,thrA_4	2394	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_503	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOFDP010000001.1 Salmonella enterica strain PNUSAS355211 SAMN35713534-rid18362853.denovo.01, whole genome shotgun sequence	440217..440654	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOFDP010000037.1 Salmonella enterica strain PNUSAS355211 SAMN35713534-rid18362853.guided.26, whole genome shotgun sequence	11075..11512	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOFDP010000014.1 Salmonella enterica strain PNUSAS355211 SAMN35713534-rid18362853.denovo.14, whole genome shotgun sequence	69167..69308																																																						avrA	ABOFDP010000002.1	497218..498086	99.425	870	0						
GCA_032900225.1_PDT001776530.1_genomic.fna	Salmonella_enterica	0.5221	70.615 KB	22	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	-:r:1,2	15	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCMY-2,blaCMY-2,fosA7,fosA7,floR,floR,qnrB19,qnrB19,sul2,sul1,sul1,sul2,sul2,tet(A),tet(O),tet(B),tet(A),tet(O),tet(B),dfrA34,dfrA34	1	parC_p.T57S	2	Col(pHAD28),IncC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOFDQ010000024.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.024, whole genome shotgun sequence	12532..12969	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFDQ010000047.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.047, whole genome shotgun sequence	28530..29366	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFDQ010000047.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.047, whole genome shotgun sequence	27727..28530	Streptomycin	AF321551	aadA1	90.67	772/792	ABOFDQ010000083.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.088, whole genome shotgun sequence	7534..8305	Spectinomycin, Streptomycin	FJ591054	aph(3')-Ia	99.75	816/816	ABOFDQ010000108.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.122, whole genome shotgun sequence	1035..1850	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	EU855787	aac(6')-Iaa	97.26	438/438	ABOFDQ010000130.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.guided.070, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	90.67	772/792	ABOFDQ010000133.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.guided.090, whole genome shotgun sequence	4197..4968	Spectinomycin, Streptomycin	FJ591054	aph(6)-Id	100	837/837	ABOFDQ010000134.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.guided.095, whole genome shotgun sequence	3654..4490	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFDQ010000134.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.guided.095, whole genome shotgun sequence	2851..3654	Streptomycin	AF321551	aph(3')-Ia	99.75	816/816	ABOFDQ010000141.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.guided.120, whole genome shotgun sequence	106..921	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	EU855787	blaCMY-2	100	1146/1146	ABOFDQ010000054.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.055, whole genome shotgun sequence	27965..29110	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOFDQ010000129.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.guided.067, whole genome shotgun sequence	1433..2578	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	fosA7	100	423/423	ABOFDQ010000006.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.006, whole genome shotgun sequence	124054..124476	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABOFDQ010000128.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.guided.048, whole genome shotgun sequence	34464..34886	Fosfomycin	LAPJ01000014	floR	98.27	1214/1215	ABOFDQ010000047.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.047, whole genome shotgun sequence	32502..33715	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABOFDQ010000135.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.guided.106, whole genome shotgun sequence	2294..3507	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABOFDQ010000102.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.112, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOFDQ010000139.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.guided.117, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABOFDQ010000047.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.047, whole genome shotgun sequence	26851..27666	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOFDQ010000083.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.088, whole genome shotgun sequence	4243..5082	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFDQ010000133.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.guided.090, whole genome shotgun sequence	7420..8259	Sulfamethoxazole	U12338	sul2	100	816/816	ABOFDQ010000134.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.guided.095, whole genome shotgun sequence	1975..2790	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABOFDQ010000138.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.guided.114, whole genome shotgun sequence	1975..2790	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOFDQ010000047.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.047, whole genome shotgun sequence	30627..31901	Doxycycline, Tetracycline	AF534183	tet(O)	99.48	1920/1920	ABOFDQ010000094.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.101, whole genome shotgun sequence	2705..4624	Doxycycline, Tetracycline, Minocycline	M18896	tet(B)	99.92	1206/1206	ABOFDQ010000099.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.107, whole genome shotgun sequence	2250..3455	Doxycycline, Tetracycline, Minocycline	AP000342	tet(A)	100	1275/1275	ABOFDQ010000134.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.guided.095, whole genome shotgun sequence	5751..7025	Doxycycline, Tetracycline	AF534183	tet(O)	99.48	1920/1920	ABOFDQ010000136.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.guided.110, whole genome shotgun sequence	273..2192	Doxycycline, Tetracycline, Minocycline	M18896	tet(B)	99.92	1206/1206	ABOFDQ010000137.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.guided.111, whole genome shotgun sequence	2113..3318	Doxycycline, Tetracycline, Minocycline	AP000342	dfrA34	100	588/588	ABOFDQ010000083.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.088, whole genome shotgun sequence	1470..2057	Trimethoprim	JYRF01000065	dfrA34	100	588/588	ABOFDQ010000140.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.guided.118, whole genome shotgun sequence	1509..2096	Trimethoprim	JYRF01000065																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOFDQ010000102.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.112, whole genome shotgun sequence	1522..1652	enterobacteriales	IncC	99.76	417 / 417	ABOFDQ010000052.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FSIS22313227 SAMN35713324-rid18360393.denovo.053, whole genome shotgun sequence	1596..2012																																																avrA	ABOFDQ010000016.1	43842..44711	99.54	870	0						
GCA_032900245.1_PDT001776532.1_genomic.fna	Salmonella_enterica	0.5201	314.697 KB	6	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFDR010000001.1 Salmonella enterica strain PNUSAS355168 SAMN35713498-rid18362843.denovo.01, whole genome shotgun sequence	482600..483037	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFDR010000045.1 Salmonella enterica strain PNUSAS355168 SAMN35713498-rid18362843.guided.17, whole genome shotgun sequence	17925..18362	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOFDR010000028.1 Salmonella enterica strain PNUSAS355168 SAMN35713498-rid18362843.denovo.30, whole genome shotgun sequence	24683..25325	enterobacteriales	IncFII(S)	100	262 / 262	ABOFDR010000028.1 Salmonella enterica strain PNUSAS355168 SAMN35713498-rid18362843.denovo.30, whole genome shotgun sequence	9337..9598		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOFDR010000018.1 Salmonella enterica strain PNUSAS355168 SAMN35713498-rid18362843.denovo.19, whole genome shotgun sequence	20583..20724																																									avrA	ABOFDR010000003.1	174491..175360	99.885	870	0						
GCA_032900265.1_PDT001776529.1_genomic.fna	Salmonella_enterica	0.5212	296.234 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOFDS010000001.1 Salmonella enterica strain PNUSAS355169 SAMN35713493-rid18365623.denovo.01, whole genome shotgun sequence	503341..503778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOFDS010000040.1 Salmonella enterica strain PNUSAS355169 SAMN35713493-rid18365623.guided.26, whole genome shotgun sequence	8745..9182	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	95.65	138 / 142	ABOFDS010000019.1 Salmonella enterica strain PNUSAS355169 SAMN35713493-rid18365623.denovo.20, whole genome shotgun sequence	17351..17486																																																						avrA	ABOFDS010000002.1	144854..145723	99.31	870	0						
GCA_032900325.1_PDT001776527.1_genomic.fna	Salmonella_enterica	0.5216	386.586 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25*,sucA_20,thrA_33	64*	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	99.749373433584	100	purE_25*	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOFDU010000001.1 Salmonella enterica strain PNUSAS355165 SAMN35713501-rid18365613.denovo.01, whole genome shotgun sequence	806465..806902	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOFDU010000022.1 Salmonella enterica strain PNUSAS355165 SAMN35713501-rid18365613.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFDU010000005.1	149711..150580	99.54	870	0						
GCA_032900345.1_PDT001776523.1_genomic.fna	Salmonella_enterica	0.5203	469.751 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFDW010000001.1 Salmonella enterica strain PNUSAS355159 SAMN35713507-rid18362823.denovo.01, whole genome shotgun sequence	253840..254277	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFDW010000026.1 Salmonella enterica strain PNUSAS355159 SAMN35713507-rid18362823.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABOFDW010000017.1 Salmonella enterica strain PNUSAS355159 SAMN35713507-rid18362823.denovo.19, whole genome shotgun sequence	6868..7241																																																						avrA	ABOFDW010000008.1	174792..175661	99.54	870	0						
GCA_032900365.1_PDT001776522.1_genomic.fna	Salmonella_enterica	0.5217	641.395 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOFDX010000001.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.denovo.01, whole genome shotgun sequence	615790..616227	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOFDX010000025.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.denovo.30, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOFDX010000034.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.guided.10, whole genome shotgun sequence	8082..8519	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOFDX010000038.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.guided.28, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOFDX010000025.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.denovo.30, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOFDX010000038.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.guided.28, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOFDX010000023.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.denovo.27, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOFDX010000037.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.guided.26, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOFDX010000022.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.denovo.25, whole genome shotgun sequence	2728..3941	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOFDX010000039.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOFDX010000025.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.denovo.30, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOFDX010000038.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.guided.28, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOFDX010000029.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.denovo.38, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFDX010000042.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.guided.36, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOFDX010000022.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.denovo.25, whole genome shotgun sequence	853..2127	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOFDX010000040.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.guided.34, whole genome shotgun sequence	884..2158	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOFDX010000028.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.denovo.37, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOFDX010000041.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.guided.35, whole genome shotgun sequence	266..739	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOFDX010000018.1 Salmonella enterica strain PNUSAS355155 SAMN35713506-rid18362813.denovo.21, whole genome shotgun sequence	8402..8652																																																						avrA	ABOFDX010000002.1	553179..554048	99.77	870	0						
GCA_032900375.1_PDT001776520.1_genomic.fna	Salmonella_enterica	0.5225	84.973 KB	18	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFDY010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313220 SAMN35713241-rid18361163.denovo.004, whole genome shotgun sequence	25587..26024	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFDY010000136.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313220 SAMN35713241-rid18361163.guided.076, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFDY010000081.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313220 SAMN35713241-rid18361163.denovo.084, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOFDY010000078.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313220 SAMN35713241-rid18361163.denovo.081, whole genome shotgun sequence	6934..7195																																																avrA	ABOFDY010000035.1	43554..44423	99.54	870	0						
GCA_032900405.1_PDT001776516.1_genomic.fna	Salmonella_enterica	0.5211	478.57 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFDZ010000001.1 Salmonella enterica strain PNUSAS355218 SAMN35713485-rid18364213.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFDZ010000024.1 Salmonella enterica strain PNUSAS355218 SAMN35713485-rid18364213.guided.19, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFDZ010000014.1 Salmonella enterica strain PNUSAS355218 SAMN35713485-rid18364213.denovo.14, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABOFDZ010000014.1 Salmonella enterica strain PNUSAS355218 SAMN35713485-rid18364213.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABOFDZ010000002.1	506366..507235	99.54	870	0						
GCA_032900465.1_PDT001949005.1_genomic.fna	Salmonella_enterica	0.5228	59.097 KB	28	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFED010000021.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325839 SAMN37905815-rid19915963.denovo.021, whole genome shotgun sequence	12566..13003	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFED010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325839 SAMN37905815-rid19915963.denovo.055, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFED010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325839 SAMN37905815-rid19915963.denovo.055, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOFED010000155.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325839 SAMN37905815-rid19915963.guided.069, whole genome shotgun sequence	24957..25394	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFED010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325839 SAMN37905815-rid19915963.guided.105, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFED010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325839 SAMN37905815-rid19915963.guided.105, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOFED010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325839 SAMN37905815-rid19915963.denovo.055, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFED010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325839 SAMN37905815-rid19915963.guided.105, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOFED010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325839 SAMN37905815-rid19915963.denovo.055, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFED010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325839 SAMN37905815-rid19915963.guided.092, whole genome shotgun sequence	6946..8145	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOFED010000103.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325839 SAMN37905815-rid19915963.denovo.108, whole genome shotgun sequence	5345..5904																																																						avrA	ABOFED010000046.1	39430..40299	99.655	870	0						
GCA_032900545.1_PDT001776504.1_genomic.fna	Salmonella_enterica	0.5235	48.653 KB	31	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOFEH010000016.1 Salmonella enterica subsp. enterica serovar India strain FSIS22313229 SAMN35713346-rid18364183.denovo.016, whole genome shotgun sequence	12505..12942	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOFEH010000169.1 Salmonella enterica subsp. enterica serovar India strain FSIS22313229 SAMN35713346-rid18364183.guided.058, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOFEH010000141.1 Salmonella enterica subsp. enterica serovar India strain FSIS22313229 SAMN35713346-rid18364183.denovo.145, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOFEH010000171.1 Salmonella enterica subsp. enterica serovar India strain FSIS22313229 SAMN35713346-rid18364183.guided.144, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOFEH010000141.1 Salmonella enterica subsp. enterica serovar India strain FSIS22313229 SAMN35713346-rid18364183.denovo.145, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOFEH010000171.1 Salmonella enterica subsp. enterica serovar India strain FSIS22313229 SAMN35713346-rid18364183.guided.144, whole genome shotgun sequence	2148..2278																																																avrA	ABOFEH010000004.1	94228..95097	98.966	870	0						
GCA_032900645.1_PDT001776497.1_genomic.fna	Salmonella_enterica	0.5215	209.204 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFEM010000001.1 Salmonella enterica strain PNUSAS355115 SAMN35712910-rid18365563.denovo.01, whole genome shotgun sequence	624743..625180	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFEM010000047.1 Salmonella enterica strain PNUSAS355115 SAMN35712910-rid18365563.guided.32, whole genome shotgun sequence	5954..6391	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFEM010000003.1	39428..40297	99.195	870	0						
GCA_032900705.1_PDT001776492.1_genomic.fna	Salmonella_enterica	0.5212	223.396 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFES010000004.1 Salmonella enterica strain PNUSAS355056 SAMN35712856-rid18365293.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFES010000060.1 Salmonella enterica strain PNUSAS355056 SAMN35712856-rid18365293.guided.14, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col440I	100	114 / 114	ABOFES010000044.1 Salmonella enterica strain PNUSAS355056 SAMN35712856-rid18365293.denovo.47, whole genome shotgun sequence	2169..2282	enterobacteriales	IncFIB(S)	100	643 / 643	ABOFES010000025.1 Salmonella enterica strain PNUSAS355056 SAMN35712856-rid18365293.denovo.26, whole genome shotgun sequence	44750..45392		enterobacteriales	IncFII(S)	100	262 / 262	ABOFES010000025.1 Salmonella enterica strain PNUSAS355056 SAMN35712856-rid18365293.denovo.26, whole genome shotgun sequence	29405..29666																																									avrA	ABOFES010000005.1	174651..175519	100	869	0						
GCA_032900725.1_PDT001776495.1_genomic.fna	Salmonella_enterica	0.5218	225.563 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFEP010000001.1 Salmonella enterica strain PNUSAS355116 SAMN35712908-rid18361093.denovo.01, whole genome shotgun sequence	458967..459404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFEP010000052.1 Salmonella enterica strain PNUSAS355116 SAMN35712908-rid18361093.guided.36, whole genome shotgun sequence	9420..9857	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOFEP010000031.1 Salmonella enterica strain PNUSAS355116 SAMN35712908-rid18361093.denovo.31, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABOFEP010000031.1 Salmonella enterica strain PNUSAS355116 SAMN35712908-rid18361093.denovo.31, whole genome shotgun sequence	9325..9586																																																avrA	ABOFEP010000006.1	98459..99328	99.885	870	0						
GCA_032900765.1_PDT001776491.1_genomic.fna	Salmonella_enterica	0.5211	219.349 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		1	IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFER010000001.1 Salmonella enterica strain PNUSAS355062 SAMN35712853-rid18364133.denovo.01, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFER010000030.1 Salmonella enterica strain PNUSAS355062 SAMN35712853-rid18364133.denovo.31, whole genome shotgun sequence	17308..18144	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFER010000030.1 Salmonella enterica strain PNUSAS355062 SAMN35712853-rid18364133.denovo.31, whole genome shotgun sequence	16505..17308	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOFER010000058.1 Salmonella enterica strain PNUSAS355062 SAMN35712853-rid18364133.guided.24, whole genome shotgun sequence	42178..42615	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFER010000062.1 Salmonella enterica strain PNUSAS355062 SAMN35712853-rid18364133.guided.46, whole genome shotgun sequence	4817..5653	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFER010000062.1 Salmonella enterica strain PNUSAS355062 SAMN35712853-rid18364133.guided.46, whole genome shotgun sequence	4014..4817	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOFER010000027.1 Salmonella enterica strain PNUSAS355062 SAMN35712853-rid18364133.denovo.28, whole genome shotgun sequence	19935..21080	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOFER010000060.1 Salmonella enterica strain PNUSAS355062 SAMN35712853-rid18364133.guided.42, whole genome shotgun sequence	10167..11312	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.27	1214/1215	ABOFER010000030.1 Salmonella enterica strain PNUSAS355062 SAMN35712853-rid18364133.denovo.31, whole genome shotgun sequence	21280..22493	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABOFER010000063.1 Salmonella enterica strain PNUSAS355062 SAMN35712853-rid18364133.guided.50, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOFER010000030.1 Salmonella enterica strain PNUSAS355062 SAMN35712853-rid18364133.denovo.31, whole genome shotgun sequence	15629..16444	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOFER010000062.1 Salmonella enterica strain PNUSAS355062 SAMN35712853-rid18364133.guided.46, whole genome shotgun sequence	3138..3953	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOFER010000030.1 Salmonella enterica strain PNUSAS355062 SAMN35712853-rid18364133.denovo.31, whole genome shotgun sequence	19405..20679	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOFER010000064.1 Salmonella enterica strain PNUSAS355062 SAMN35712853-rid18364133.guided.53, whole genome shotgun sequence	1263..2537	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOFER010000029.1 Salmonella enterica strain PNUSAS355062 SAMN35712853-rid18364133.denovo.30, whole genome shotgun sequence	17493..17909																																																						avrA	ABOFER010000003.1	174408..175277	99.885	870	0						
GCA_032900785.1_PDT001776493.1_genomic.fna	Salmonella_enterica	0.5214	275.098 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFEQ010000001.1 Salmonella enterica strain PNUSAS355065 SAMN35712865-rid18362743.denovo.01, whole genome shotgun sequence	337830..338267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFEQ010000052.1 Salmonella enterica strain PNUSAS355065 SAMN35712865-rid18362743.guided.27, whole genome shotgun sequence	20997..21434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOFEQ010000003.1	171578..172446	99.77	870	0						
GCA_032900825.1_PDT001776488.1_genomic.fna	Salmonella_enterica	0.5203	284.012 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFEV010000001.1 Salmonella enterica strain PNUSAS355058 SAMN35712852-rid18362733.denovo.01, whole genome shotgun sequence	15960..16397	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFEV010000045.1 Salmonella enterica strain PNUSAS355058 SAMN35712852-rid18362733.guided.24, whole genome shotgun sequence	16001..16438	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFEV010000027.1 Salmonella enterica strain PNUSAS355058 SAMN35712852-rid18362733.denovo.30, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOFEV010000030.1 Salmonella enterica strain PNUSAS355058 SAMN35712852-rid18362733.denovo.33, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.66	374 / 374	ABOFEV010000021.1 Salmonella enterica strain PNUSAS355058 SAMN35712852-rid18362733.denovo.21, whole genome shotgun sequence	30550..30923																																									avrA	ABOFEV010000008.1	174836..175705	99.54	870	0						
GCA_032900845.1_PDT001776489.1_genomic.fna	Salmonella_enterica	0.5202	470.169 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFEU010000001.1 Salmonella enterica strain PNUSAS355117 SAMN35712906-rid18364123.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFEU010000028.1 Salmonella enterica strain PNUSAS355117 SAMN35712906-rid18364123.guided.16, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFEU010000019.1 Salmonella enterica strain PNUSAS355117 SAMN35712906-rid18364123.denovo.22, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOFEU010000020.1 Salmonella enterica strain PNUSAS355117 SAMN35712906-rid18364123.denovo.23, whole genome shotgun sequence	3388..3649		enterobacteriales	IncX1	98.93	374 / 374	ABOFEU010000015.1 Salmonella enterica strain PNUSAS355117 SAMN35712906-rid18364123.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABOFEU010000007.1	174800..175669	99.54	870	0						
GCA_032900865.1_PDT001776487.1_genomic.fna	Salmonella_enterica	0.5204	244.957 KB	7	aroC_13,dnaN_181,hemD_49,hisD_13,purE_183,sucA_71,thrA_4	617	28:i:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_181	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_183	sucA	100	100	sucA_71	thrA	100	100	thrA_4	28	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	Cotham		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFEW010000002.1 Salmonella enterica strain PNUSAS355061 SAMN35712885-rid18365553.denovo.02, whole genome shotgun sequence	410933..411370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOFEW010000066.1 Salmonella enterica strain PNUSAS355061 SAMN35712885-rid18365553.guided.29, whole genome shotgun sequence	12027..12464	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFEW010000005.1	154302..155171	99.425	870	0						
GCA_032900905.1_PDT001776485.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFEY010000001.1 Salmonella enterica strain PNUSAS355059 SAMN35712869-rid18361073.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFEY010000027.1 Salmonella enterica strain PNUSAS355059 SAMN35712869-rid18361073.guided.14, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFEY010000016.1 Salmonella enterica strain PNUSAS355059 SAMN35712869-rid18361073.denovo.18, whole genome shotgun sequence	15198..15840	enterobacteriales	IncFII(S)	100	262 / 262	ABOFEY010000018.1 Salmonella enterica strain PNUSAS355059 SAMN35712869-rid18361073.denovo.21, whole genome shotgun sequence	3402..3663																																																avrA	ABOFEY010000002.1	553077..553946	99.54	870	0						
GCA_032900925.1_PDT001776482.1_genomic.fna	Salmonella_enterica	0.5223	266.445 KB	7	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOFFB010000001.1 Salmonella enterica strain PNUSAS355064 SAMN35712863-rid18364093.denovo.01, whole genome shotgun sequence	293540..293977	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOFFB010000038.1 Salmonella enterica strain PNUSAS355064 SAMN35712863-rid18364093.guided.22, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.81	113 / 114	ABOFFB010000026.1 Salmonella enterica strain PNUSAS355064 SAMN35712863-rid18364093.denovo.29, whole genome shotgun sequence	2528..2639																																																						avrA	ABOFFB010000004.1	174099..174967	99.425	870	0						
GCA_032900945.1_PDT001776484.1_genomic.fna	Salmonella_enterica	0.5215	275.207 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFEZ010000001.1 Salmonella enterica strain PNUSAS355063 SAMN35712886-rid18364103.denovo.01, whole genome shotgun sequence	262992..263429	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFEZ010000039.1 Salmonella enterica strain PNUSAS355063 SAMN35712886-rid18364103.guided.28, whole genome shotgun sequence	20617..21054	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOFEZ010000003.1	218216..219084	99.77	870	0						
GCA_032900955.1_PDT001776483.1_genomic.fna	Salmonella_enterica	0.5214	411.847 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOFFA010000001.1 Salmonella enterica strain PNUSAS355060 SAMN35712858-rid18362723.denovo.01, whole genome shotgun sequence	482177..482614	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOFFA010000030.1 Salmonella enterica strain PNUSAS355060 SAMN35712858-rid18362723.guided.17, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOFFA010000025.1 Salmonella enterica strain PNUSAS355060 SAMN35712858-rid18362723.denovo.28, whole genome shotgun sequence	546..674																																																						avrA	ABOFFA010000003.1	108909..109778	99.77	870	0						
GCA_032900985.1_PDT001776481.1_genomic.fna	Salmonella_enterica	0.5207	222.96 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFFD010000001.1 Salmonella enterica strain PNUSAS355057 SAMN35712867-rid18364083.denovo.01, whole genome shotgun sequence	145426..145863	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOFFD010000036.1 Salmonella enterica strain PNUSAS355057 SAMN35712867-rid18364083.denovo.41, whole genome shotgun sequence	555..1370	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	EU722351	aph(6)-Id	100	837/837	ABOFFD010000039.1 Salmonella enterica strain PNUSAS355057 SAMN35712867-rid18364083.denovo.45, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFFD010000039.1 Salmonella enterica strain PNUSAS355057 SAMN35712867-rid18364083.denovo.45, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOFFD010000057.1 Salmonella enterica strain PNUSAS355057 SAMN35712867-rid18364083.guided.34, whole genome shotgun sequence	10606..11043	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOFFD010000060.1 Salmonella enterica strain PNUSAS355057 SAMN35712867-rid18364083.guided.40, whole genome shotgun sequence	1890..2705	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	EU722351	aph(6)-Id	100	837/837	ABOFFD010000061.1 Salmonella enterica strain PNUSAS355057 SAMN35712867-rid18364083.guided.44, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFFD010000061.1 Salmonella enterica strain PNUSAS355057 SAMN35712867-rid18364083.guided.44, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOFFD010000046.1 Salmonella enterica strain PNUSAS355057 SAMN35712867-rid18364083.denovo.53, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFFD010000062.1 Salmonella enterica strain PNUSAS355057 SAMN35712867-rid18364083.guided.52, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOFFD010000039.1 Salmonella enterica strain PNUSAS355057 SAMN35712867-rid18364083.denovo.45, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOFFD010000061.1 Salmonella enterica strain PNUSAS355057 SAMN35712867-rid18364083.guided.44, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOFFD010000033.1 Salmonella enterica strain PNUSAS355057 SAMN35712867-rid18364083.denovo.36, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFFD010000058.1 Salmonella enterica strain PNUSAS355057 SAMN35712867-rid18364083.guided.35, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFFD010000045.1 Salmonella enterica strain PNUSAS355057 SAMN35712867-rid18364083.denovo.51, whole genome shotgun sequence	1461..1591																																																						avrA	ABOFFD010000002.1	93863..94732	99.885	870	0						
GCA_032901025.1_PDT001776477.1_genomic.fna	Salmonella_enterica	0.5213	275.098 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFFF010000001.1 Salmonella enterica strain PNUSAS355055 SAMN35712861-rid18362703.denovo.01, whole genome shotgun sequence	337830..338267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFFF010000049.1 Salmonella enterica strain PNUSAS355055 SAMN35712861-rid18362703.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOFFF010000003.1	171578..172446	99.77	870	0						
GCA_032901045.1_PDT001776479.1_genomic.fna	Salmonella_enterica	0.5222	79.278 KB	21	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	2	aac(6')-Iaa,aac(6')-Iaa,tet(C),tet(C)	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),Col440I,ColE10,IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOFFE010000024.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313228 SAMN35713328-rid18364073.denovo.024, whole genome shotgun sequence	11319..11756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOFFE010000171.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313228 SAMN35713328-rid18364073.guided.065, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	tet(C)	99.83	1191/1191	ABOFFE010000099.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313228 SAMN35713328-rid18364073.denovo.102, whole genome shotgun sequence	1430..2620	Doxycycline, Tetracycline	AF055345	tet(C)	99.83	1191/1191	ABOFFE010000174.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313228 SAMN35713328-rid18364073.guided.116, whole genome shotgun sequence	1469..2659	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOFFE010000115.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313228 SAMN35713328-rid18364073.denovo.119, whole genome shotgun sequence	2209..2339	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOFFE010000118.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313228 SAMN35713328-rid18364073.denovo.122, whole genome shotgun sequence	557..687		enterobacteriales	Col440I	94.59	111 / 114	ABOFFE010000114.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313228 SAMN35713328-rid18364073.denovo.118, whole genome shotgun sequence	3175..3285		enterobacteriales	ColE10	100	177 / 177	ABOFFE010000150.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313228 SAMN35713328-rid18364073.denovo.154, whole genome shotgun sequence	695..871		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOFFE010000105.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313228 SAMN35713328-rid18364073.denovo.108, whole genome shotgun sequence	4580..5113																											avrA	ABOFFE010000017.1	79154..80023	99.54	870	0						
GCA_032901145.1_PDT001776469.1_genomic.fna	Salmonella_enterica	0.5217	341.383 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFFK010000004.1 Salmonella enterica strain PNUSAS355051 SAMN35712342-rid18364053.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFFK010000048.1 Salmonella enterica strain PNUSAS355051 SAMN35712342-rid18364053.guided.36, whole genome shotgun sequence	1925..2362	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOFFK010000015.1 Salmonella enterica strain PNUSAS355051 SAMN35712342-rid18364053.denovo.15, whole genome shotgun sequence	44772..45414	enterobacteriales	IncFII(S)	100	262 / 262	ABOFFK010000015.1 Salmonella enterica strain PNUSAS355051 SAMN35712342-rid18364053.denovo.15, whole genome shotgun sequence	29426..29687																																																avrA	ABOFFK010000001.1	401320..402188	100	869	0						
GCA_032901165.1_PDT001776466.1_genomic.fna	Salmonella_enterica	0.5225	99.691 KB	17	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFFM010000018.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313146 SAMN35712974-rid18362663.denovo.018, whole genome shotgun sequence	83778..84215	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFFM010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313146 SAMN35712974-rid18362663.denovo.061, whole genome shotgun sequence	18473..19264	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFFM010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313146 SAMN35712974-rid18362663.denovo.061, whole genome shotgun sequence	18473..19264	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOFFM010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313146 SAMN35712974-rid18362663.guided.060, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFFM010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313146 SAMN35712974-rid18362663.guided.060, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOFFM010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313146 SAMN35712974-rid18362663.guided.064, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABOFFM010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313146 SAMN35712974-rid18362663.denovo.061, whole genome shotgun sequence	17129..17968	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFFM010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313146 SAMN35712974-rid18362663.guided.060, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOFFM010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313146 SAMN35712974-rid18362663.denovo.061, whole genome shotgun sequence	3413..4612	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFFM010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313146 SAMN35712974-rid18362663.guided.060, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOFFM010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313146 SAMN35712974-rid18362663.denovo.067, whole genome shotgun sequence	9109..9668																																																						avrA	ABOFFM010000008.1	93814..94683	99.655	870	0						
GCA_032901185.1_PDT001776468.1_genomic.fna	Salmonella_enterica	0.5224	618.32 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFFL010000001.1 Salmonella enterica strain PNUSAS355040 SAMN35712339-rid18362683.denovo.01, whole genome shotgun sequence	574040..574477	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.94	389/438	ABOFFL010000028.1 Salmonella enterica strain PNUSAS355040 SAMN35712339-rid18362683.guided.23, whole genome shotgun sequence	1..389	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFFL010000003.1	151017..151886	99.655	870	0						
GCA_032901205.1_PDT001776463.1_genomic.fna	Salmonella_enterica	0.5224	762.692 KB	2	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOFFO010000001.1 Salmonella enterica strain PNUSAS355041 SAMN35712333-rid18361023.denovo.01, whole genome shotgun sequence	1363945..1364382	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOFFO010000015.1 Salmonella enterica strain PNUSAS355041 SAMN35712333-rid18361023.guided.13, whole genome shotgun sequence	1788..2225	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOFFO010000003.1	553621..554490	99.655	870	0						
GCA_032901225.1_PDT001776465.1_genomic.fna	Salmonella_enterica	0.5204	430.433 KB	5	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFFN010000001.1 Salmonella enterica strain PNUSAS355036 SAMN35712336-rid18360373.denovo.01, whole genome shotgun sequence	110416..110853	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFFN010000027.1 Salmonella enterica strain PNUSAS355036 SAMN35712336-rid18360373.guided.19, whole genome shotgun sequence	3093..3530	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFFN010000003.1	143952..144821	98.966	870	0						
GCA_032901245.1_PDT001776462.1_genomic.fna	Salmonella_enterica	0.5217	678.815 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFFP010000001.1 Salmonella enterica strain PNUSAS355039 SAMN35712330-rid18365533.denovo.01, whole genome shotgun sequence	519943..520380	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFFP010000021.1 Salmonella enterica strain PNUSAS355039 SAMN35712330-rid18365533.guided.17, whole genome shotgun sequence	1003..1440	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFFP010000003.1	504236..505105	99.195	870	0						
GCA_032901265.1_PDT001776461.1_genomic.fna	Salmonella_enterica	0.5213	46.73 KB	35	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFFQ010000064.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313222 SAMN35713240-rid18361013.denovo.064, whole genome shotgun sequence	15434..15871	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFFQ010000123.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313222 SAMN35713240-rid18361013.denovo.126, whole genome shotgun sequence	4191..5027	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFFQ010000123.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313222 SAMN35713240-rid18361013.denovo.126, whole genome shotgun sequence	5027..5830	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOFFQ010000232.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313222 SAMN35713240-rid18361013.guided.103, whole genome shotgun sequence	14184..14621	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFFQ010000235.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313222 SAMN35713240-rid18361013.guided.136, whole genome shotgun sequence	2284..3120	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFFQ010000235.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313222 SAMN35713240-rid18361013.guided.136, whole genome shotgun sequence	1481..2284	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOFFQ010000158.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313222 SAMN35713240-rid18361013.denovo.162, whole genome shotgun sequence	1741..2946	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFFQ010000236.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313222 SAMN35713240-rid18361013.guided.188, whole genome shotgun sequence	321..1526	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOFFQ010000149.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313222 SAMN35713240-rid18361013.denovo.153, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABOFFQ010000123.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313222 SAMN35713240-rid18361013.denovo.126, whole genome shotgun sequence	3307..3568		enterobacteriales	IncFII	96.95	262 / 261	ABOFFQ010000235.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313222 SAMN35713240-rid18361013.guided.136, whole genome shotgun sequence	3743..4004		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOFFQ010000130.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313222 SAMN35713240-rid18361013.denovo.133, whole genome shotgun sequence	4468..4609		enterobacteriales	IncX1	100	373 / 373	ABOFFQ010000167.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313222 SAMN35713240-rid18361013.denovo.171, whole genome shotgun sequence	2153..2525																											avrA	ABOFFQ010000040.1	39484..40353	99.655	870	0						
GCA_032901285.1_PDT001776456.1_genomic.fna	Salmonella_enterica	0.5231	82.583 KB	20	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOFFR010000001.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS22313219 SAMN35712972-rid18362633.denovo.001, whole genome shotgun sequence	58788..59225	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOFFR010000111.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS22313219 SAMN35712972-rid18362633.guided.084, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFFR010000028.1	62109..62978	99.425	870	0						
GCA_032901295.1_PDT001776434.1_genomic.fna	Salmonella_enterica	0.5236	72.556 KB	18	aroC_222,dnaN_105,hemD_46,hisD_123,purE_225,sucA_115,thrA_115	1593	-:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_222	dnaN	100	100	dnaN_105	hemD	100	100	hemD_46	hisD	100	100	hisD_123	purE	100	100	purE_225	sucA	100	100	sucA_115	thrA	100	100	thrA_115	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFFU010000002.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS22313140 SAMN35712920-rid18363983.denovo.002, whole genome shotgun sequence	204316..204753	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFFU010000111.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS22313140 SAMN35712920-rid18363983.guided.051, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOFFU010000089.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS22313140 SAMN35712920-rid18363983.denovo.092, whole genome shotgun sequence	2209..2339																																																						avrA	ABOFFU010000005.1	98076..98945	99.425	870	0						
GCA_032902365.1_PDT001776300.1_genomic.fna	Salmonella_enterica	0.5212	315.31 KB	6	aroC_1271*,dnaN_1177*,hemD_1062*,hisD_1129*,purE_76,sucA_9,thrA_87*	Unknown	28:z4,z24:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	99.4011976047904	100	aroC_1271*	dnaN	99.2015968063872	100	dnaN_1177*	hemD	99.7685185185185	100	hemD_1062*	hisD	99.8003992015968	100	hisD_1129*	purE	100	100	purE_76	sucA	100	100	sucA_9	thrA	99.6007984031936	100	thrA_87*	28	z4,z24	z6	Salmonella enterica subspecies enterica (subspecies I)	I 28:z4,z24:z6	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIOV010000002.1 TPA_asm: Salmonella enterica strain microbial SAMN35673525-rid18358803.denovo.02, whole genome shotgun sequence	152080..152517	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIOV010000042.1 TPA_asm: Salmonella enterica strain microbial SAMN35673525-rid18358803.guided.25, whole genome shotgun sequence	16445..16882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIOV010000001.1	503959..504828	99.31	870	0						
GCA_032902385.1_PDT001776297.1_genomic.fna	Salmonella_enterica	0.5207	337.009 KB	5	aroC_701,dnaN_70,hemD_93,hisD_78,purE_113!,purE_113!,sucA_6,thrA_68	Unknown	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_701	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113!	purE	100	100	purE_113!	sucA	100	100	sucA_6	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIOX010000001.1 TPA_asm: Salmonella enterica strain microbial SAMN35673844-rid18359623.denovo.01, whole genome shotgun sequence	822790..823227	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIOX010000032.1 TPA_asm: Salmonella enterica strain microbial SAMN35673844-rid18359623.guided.18, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIOX010000002.1	551277..552146	99.195	870	0						
GCA_032902405.1_PDT001776298.1_genomic.fna	Salmonella_enterica	0.5205	342.088 KB	4	aroC_701,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	3760	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_701	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIOW010000001.1 TPA_asm: Salmonella enterica strain microbial SAMN35673841-rid18359633.denovo.01, whole genome shotgun sequence	822790..823227	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIOW010000031.1 TPA_asm: Salmonella enterica strain microbial SAMN35673841-rid18359633.guided.16, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIOW010000002.1	551277..552146	99.195	870	0						
GCA_032902425.1_PDT001776296.1_genomic.fna	Salmonella_enterica	0.5193	521.178 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIOY010000001.1 TPA_asm: Salmonella enterica strain microbial SAMN35673845-rid18360243.denovo.01, whole genome shotgun sequence	891783..892220	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIOY010000025.1 TPA_asm: Salmonella enterica strain microbial SAMN35673845-rid18360243.guided.10, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIOY010000004.1	185149..186018	99.425	870	0						
GCA_032902445.1_PDT001776235.1_genomic.fna	Salmonella_enterica	0.5213	268.024 KB	7	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQIPA010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015865 SAMN35438816-rid18358763.denovo.10, whole genome shotgun sequence	52310..52747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQIPA010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015865 SAMN35438816-rid18358763.guided.21, whole genome shotgun sequence	20581..21018	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQIPA010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015865 SAMN35438816-rid18358763.denovo.37, whole genome shotgun sequence	3345..3457																																																						avrA	DAQIPA010000011.1	145338..146207	99.425	870	0						
GCA_032902455.1_PDT001776236.1_genomic.fna	Salmonella_enterica	0.5216	237.339 KB	8	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQIOZ010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015862 SAMN35438815-rid18359983.denovo.11, whole genome shotgun sequence	52310..52747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQIOZ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015862 SAMN35438815-rid18359983.guided.31, whole genome shotgun sequence	7812..8249	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQIOZ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015862 SAMN35438815-rid18359983.denovo.36, whole genome shotgun sequence	3345..3457																																																						avrA	DAQIOZ010000012.1	145338..146207	99.425	870	0						
GCA_032902485.1_PDT001776234.1_genomic.fna	Salmonella_enterica	0.522	276.631 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIPB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015884 SAMN35438825-rid18359973.denovo.01, whole genome shotgun sequence	728824..729261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIPB010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015884 SAMN35438825-rid18359973.guided.24, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIPB010000002.1	585169..586038	99.195	870	0						
GCA_032902505.1_PDT001776232.1_genomic.fna	Salmonella_enterica	0.5215	217.935 KB	8	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQIPD010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015886 SAMN35438827-rid18359303.denovo.09, whole genome shotgun sequence	52310..52747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQIPD010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015886 SAMN35438827-rid18359303.guided.35, whole genome shotgun sequence	323..760	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQIPD010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015886 SAMN35438827-rid18359303.denovo.40, whole genome shotgun sequence	3345..3457																																																						avrA	DAQIPD010000011.1	145338..146207	99.425	870	0						
GCA_032902525.1_PDT001776233.1_genomic.fna	Salmonella_enterica	0.5221	234.898 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIPC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015885 SAMN35438826-rid18358753.denovo.01, whole genome shotgun sequence	728216..728653	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIPC010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015885 SAMN35438826-rid18358753.guided.26, whole genome shotgun sequence	5660..6097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIPC010000003.1	39442..40311	99.195	870	0						
GCA_032902545.1_PDT001776230.1_genomic.fna	Salmonella_enterica	0.5213	312.468 KB	7	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQIPE010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015888 SAMN35438829-rid18359283.denovo.11, whole genome shotgun sequence	52310..52747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQIPE010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015888 SAMN35438829-rid18359283.guided.27, whole genome shotgun sequence	26221..26658	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQIPE010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015888 SAMN35438829-rid18359283.denovo.38, whole genome shotgun sequence	3345..3457																																																						avrA	DAQIPE010000012.1	145338..146207	99.425	870	0						
GCA_032902565.1_PDT001776231.1_genomic.fna	Salmonella_enterica	0.5213	276.631 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIPF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015887 SAMN35438828-rid18359293.denovo.01, whole genome shotgun sequence	727904..728341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIPF010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015887 SAMN35438828-rid18359293.guided.18, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIPF010000003.1	39536..40405	99.195	870	0						
GCA_032902585.1_PDT001776229.1_genomic.fna	Salmonella_enterica	0.5218	255.288 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIPG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015889 SAMN35438830-rid18359963.denovo.01, whole genome shotgun sequence	772111..772548	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIPG010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015889 SAMN35438830-rid18359963.guided.22, whole genome shotgun sequence	15807..16244	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIPG010000003.1	39695..40564	99.195	870	0						
GCA_032902605.1_PDT001776228.1_genomic.fna	Salmonella_enterica	0.5218	245.974 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIPH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015890 SAMN35438831-rid18359273.denovo.01, whole genome shotgun sequence	637589..638026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIPH010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015890 SAMN35438831-rid18359273.guided.20, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIPH010000002.1	585339..586208	99.195	870	0						
GCA_032902625.1_PDT001776227.1_genomic.fna	Salmonella_enterica	0.5218	336.866 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIPI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015891 SAMN35438832-rid18359263.denovo.01, whole genome shotgun sequence	727904..728341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIPI010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015891 SAMN35438832-rid18359263.guided.22, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIPI010000002.1	585329..586198	99.195	870	0						
GCA_032902645.1_PDT001776224.1_genomic.fna	Salmonella_enterica	0.5213	469.745 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQIPL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015867 SAMN35438817-rid18359943.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQIPL010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015867 SAMN35438817-rid18359943.guided.18, whole genome shotgun sequence	24488..24925	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQIPL010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015867 SAMN35438817-rid18359943.denovo.16, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	DAQIPL010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015867 SAMN35438817-rid18359943.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	DAQIPL010000007.1	174788..175657	99.54	870	0						
GCA_032902665.1_PDT001776226.1_genomic.fna	Salmonella_enterica	0.5217	276.631 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIPJ010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015893 SAMN35438833-rid18359953.denovo.05, whole genome shotgun sequence	141383..141820	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIPJ010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015893 SAMN35438833-rid18359953.guided.26, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIPJ010000003.1	39685..40554	99.195	870	0						
GCA_032902685.1_PDT001776225.1_genomic.fna	Salmonella_enterica	0.522	277.772 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIPK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015895 SAMN35438834-rid18358743.denovo.01, whole genome shotgun sequence	727904..728341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIPK010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015895 SAMN35438834-rid18358743.guided.21, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIPK010000002.1	585339..586208	99.195	870	0						
GCA_032902705.1_PDT001776223.1_genomic.fna	Salmonella_enterica	0.5219	255.288 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIPM010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015897 SAMN35438835-rid18358733.denovo.04, whole genome shotgun sequence	148904..149341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIPM010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015897 SAMN35438835-rid18358733.guided.24, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIPM010000002.1	585169..586038	99.195	870	0						
GCA_032902725.1_PDT001776222.1_genomic.fna	Salmonella_enterica	0.5201	163.021 KB	10	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIPN010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015898 SAMN35438836-rid18359253.denovo.18, whole genome shotgun sequence	82764..83201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQIPN010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015898 SAMN35438836-rid18359253.guided.44, whole genome shotgun sequence	2104..2541	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	DAQIPN010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015898 SAMN35438836-rid18359253.denovo.38, whole genome shotgun sequence	11248..11507	enterobacteriales	IncX1	100	373 / 373	DAQIPN010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015898 SAMN35438836-rid18359253.denovo.46, whole genome shotgun sequence	2153..2525																																																avrA	DAQIPN010000007.1	39484..40353	99.655	870	0						
GCA_032902745.1_PDT001776221.1_genomic.fna	Salmonella_enterica	0.5197	175.255 KB	9	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIPO010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015908 SAMN35438837-rid18359243.denovo.17, whole genome shotgun sequence	82764..83201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQIPO010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015908 SAMN35438837-rid18359243.guided.24, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	DAQIPO010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015908 SAMN35438837-rid18359243.denovo.38, whole genome shotgun sequence	4504..4763	enterobacteriales	IncX1	100	373 / 373	DAQIPO010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015908 SAMN35438837-rid18359243.denovo.39, whole genome shotgun sequence	2153..2525																																																avrA	DAQIPO010000005.1	100579..101448	99.655	870	0						
GCA_032902765.1_PDT001776220.1_genomic.fna	Salmonella_enterica	0.5214	696.391 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQIPP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015910 SAMN35438838-rid18359233.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQIPP010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015910 SAMN35438838-rid18359233.guided.20, whole genome shotgun sequence	6330..6767	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQIPP010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015910 SAMN35438838-rid18359233.denovo.18, whole genome shotgun sequence	15198..15840	enterobacteriales	IncFII(S)	100	262 / 262	DAQIPP010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015910 SAMN35438838-rid18359233.denovo.15, whole genome shotgun sequence	957..1218																																																avrA	DAQIPP010000002.1	553636..554505	99.54	870	0						
GCA_032902785.1_PDT001776219.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQIPQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015911 SAMN35438839-rid18359933.denovo.01, whole genome shotgun sequence	995929..996366	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQIPQ010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015911 SAMN35438839-rid18359933.guided.11, whole genome shotgun sequence	42417..42854	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQIPQ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015911 SAMN35438839-rid18359933.denovo.15, whole genome shotgun sequence	19334..19976	enterobacteriales	IncFII(S)	100	262 / 262	DAQIPQ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015911 SAMN35438839-rid18359933.denovo.16, whole genome shotgun sequence	3629..3890																																																avrA	DAQIPQ010000002.1	553636..554505	99.54	870	0						
GCA_032902805.1_PDT001776218.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQIPR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015912 SAMN35438840-rid18359223.denovo.01, whole genome shotgun sequence	771821..772258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQIPR010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015912 SAMN35438840-rid18359223.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQIPR010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015912 SAMN35438840-rid18359223.denovo.16, whole genome shotgun sequence	15607..16249	enterobacteriales	IncFII(S)	100	262 / 262	DAQIPR010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015912 SAMN35438840-rid18359223.denovo.21, whole genome shotgun sequence	3543..3804																																																avrA	DAQIPR010000002.1	553077..553946	99.54	870	0						
GCA_032902825.1_PDT001776217.1_genomic.fna	Salmonella_enterica	0.5201	274.732 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIPS010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015913 SAMN35438841-rid18359213.denovo.15, whole genome shotgun sequence	82764..83201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQIPS010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015913 SAMN35438841-rid18359213.guided.37, whole genome shotgun sequence	6719..7156	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	DAQIPS010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015913 SAMN35438841-rid18359213.denovo.36, whole genome shotgun sequence	4504..4763	enterobacteriales	IncX1	100	373 / 373	DAQIPS010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015913 SAMN35438841-rid18359213.denovo.38, whole genome shotgun sequence	2153..2525																																																avrA	DAQIPS010000005.1	100579..101448	99.655	870	0						
GCA_032902845.1_PDT001776216.1_genomic.fna	Salmonella_enterica	0.52	175.251 KB	10	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIPT010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015914 SAMN35438842-rid18359923.denovo.18, whole genome shotgun sequence	82764..83201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQIPT010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015914 SAMN35438842-rid18359923.guided.34, whole genome shotgun sequence	13890..14327	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	DAQIPT010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015914 SAMN35438842-rid18359923.denovo.38, whole genome shotgun sequence	4504..4763	enterobacteriales	IncX1	100	373 / 373	DAQIPT010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015914 SAMN35438842-rid18359923.denovo.46, whole genome shotgun sequence	2153..2525																																																avrA	DAQIPT010000007.1	39484..40353	99.655	870	0						
GCA_032902865.1_PDT001776215.1_genomic.fna	Salmonella_enterica	0.5202	224.655 KB	9	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIPU010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015916 SAMN35438843-rid18358723.denovo.17, whole genome shotgun sequence	82764..83201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQIPU010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015916 SAMN35438843-rid18358723.guided.34, whole genome shotgun sequence	4729..5166	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	DAQIPU010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015916 SAMN35438843-rid18358723.denovo.35, whole genome shotgun sequence	4504..4763	enterobacteriales	IncX1	100	373 / 373	DAQIPU010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015916 SAMN35438843-rid18358723.denovo.41, whole genome shotgun sequence	2153..2525																																																avrA	DAQIPU010000004.1	100579..101448	99.655	870	0						
GCA_032902885.1_PDT001776214.1_genomic.fna	Salmonella_enterica	0.5226	263.234 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQIPV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis strain 230015917 SAMN35438844-rid18359913.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQIPV010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis strain 230015917 SAMN35438844-rid18359913.guided.29, whole genome shotgun sequence	9284..9721	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIPV010000002.1	149828..150697	99.655	870	0						
GCA_032902905.1_PDT001776210.1_genomic.fna	Salmonella_enterica	0.5201	196.644 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIPZ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015921 SAMN35438847-rid18359183.denovo.13, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQIPZ010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015921 SAMN35438847-rid18359183.guided.34, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	DAQIPZ010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015921 SAMN35438847-rid18359183.denovo.47, whole genome shotgun sequence	1831..2512	enterobacteriales	IncFII	96.56	262 / 261	DAQIPZ010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015921 SAMN35438847-rid18359183.denovo.29, whole genome shotgun sequence	32119..32380		enterobacteriales	IncX1	100	373 / 373	DAQIPZ010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015921 SAMN35438847-rid18359183.denovo.37, whole genome shotgun sequence	2153..2525																																									avrA	DAQIPZ010000015.1	102495..103364	99.655	870	0						
GCA_032902925.1_PDT001776213.1_genomic.fna	Salmonella_enterica	0.5213	470.304 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQIPW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015869 SAMN35438818-rid18358713.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQIPW010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015869 SAMN35438818-rid18358713.guided.19, whole genome shotgun sequence	24488..24925	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQIPW010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015869 SAMN35438818-rid18358713.denovo.16, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	DAQIPW010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015869 SAMN35438818-rid18358713.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	DAQIPW010000007.1	174749..175618	99.54	870	0						
GCA_032902945.1_PDT001776209.1_genomic.fna	Salmonella_enterica	0.5194	344.706 KB	6	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIQA010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.denovo.09, whole genome shotgun sequence	151991..152428	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIQA010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.denovo.35, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIQA010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.denovo.35, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIQA010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.guided.27, whole genome shotgun sequence	8361..8798	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIQA010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.guided.40, whole genome shotgun sequence	829..1665	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIQA010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.guided.40, whole genome shotgun sequence	26..829	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQIQA010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.guided.41, whole genome shotgun sequence	829..1665	Streptomycin	M28829	aph(3'')-Ib	99.75	804/804	DAQIQA010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.guided.41, whole genome shotgun sequence	26..829	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIQA010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.denovo.06, whole genome shotgun sequence	158028..158450	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIQA010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.guided.25, whole genome shotgun sequence	23096..23518	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIQA010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.denovo.10, whole genome shotgun sequence	4077..5282	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIQA010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.guided.37, whole genome shotgun sequence	3706..4911	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIQA010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.denovo.26, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	DAQIQA010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.denovo.35, whole genome shotgun sequence	1831..2092		enterobacteriales	IncFII	96.95	262 / 261	DAQIQA010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.guided.40, whole genome shotgun sequence	2288..2549		enterobacteriales	IncFII	96.95	262 / 261	DAQIQA010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.guided.41, whole genome shotgun sequence	2288..2549		enterobacteriales	IncX1	100	373 / 373	DAQIQA010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015923 SAMN35438848-rid18359903.denovo.34, whole genome shotgun sequence	2153..2525																											avrA	DAQIQA010000017.1	39549..40418	99.08	870	0						
GCA_032902965.1_PDT001776212.1_genomic.fna	Salmonella_enterica	0.5221	263.453 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQIPX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis strain 230015918 SAMN35438845-rid18359203.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQIPX010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis strain 230015918 SAMN35438845-rid18359203.guided.19, whole genome shotgun sequence	31488..31925	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIPX010000003.1	39424..40293	99.655	870	0						
GCA_032902975.1_PDT001776211.1_genomic.fna	Salmonella_enterica	0.5223	210.766 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQIPY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis strain 230015919 SAMN35438846-rid18359193.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQIPY010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis strain 230015919 SAMN35438846-rid18359193.guided.21, whole genome shotgun sequence	15325..15762	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIPY010000002.1	149646..150515	99.655	870	0						
GCA_032903005.1_PDT001776208.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQIQB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015924 SAMN35438849-rid18359173.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQIQB010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015924 SAMN35438849-rid18359173.guided.15, whole genome shotgun sequence	24488..24925	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFII(S)	100	262 / 262	DAQIQB010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015924 SAMN35438849-rid18359173.denovo.21, whole genome shotgun sequence	3463..3724																																																						avrA	DAQIQB010000002.1	553636..554505	99.54	870	0						
GCA_032903025.1_PDT001776206.1_genomic.fna	Salmonella_enterica	0.5196	310.19 KB	6	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIQC010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015927 SAMN35438851-rid18359893.denovo.09, whole genome shotgun sequence	16571..17008	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIQC010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015927 SAMN35438851-rid18359893.denovo.22, whole genome shotgun sequence	34202..35038	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIQC010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015927 SAMN35438851-rid18359893.denovo.22, whole genome shotgun sequence	35038..35841	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIQC010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015927 SAMN35438851-rid18359893.guided.26, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIQC010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015927 SAMN35438851-rid18359893.guided.41, whole genome shotgun sequence	821..1657	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIQC010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015927 SAMN35438851-rid18359893.guided.41, whole genome shotgun sequence	18..821	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIQC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015927 SAMN35438851-rid18359893.denovo.01, whole genome shotgun sequence	394421..394843	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIQC010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015927 SAMN35438851-rid18359893.guided.40, whole genome shotgun sequence	1871..2293	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIQC010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015927 SAMN35438851-rid18359893.denovo.35, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIQC010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015927 SAMN35438851-rid18359893.guided.36, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIQC010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015927 SAMN35438851-rid18359893.denovo.29, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	DAQIQC010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015927 SAMN35438851-rid18359893.denovo.22, whole genome shotgun sequence	33318..33579		enterobacteriales	IncFII	96.95	262 / 261	DAQIQC010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015927 SAMN35438851-rid18359893.guided.41, whole genome shotgun sequence	2280..2541		enterobacteriales	IncX1	100	373 / 373	DAQIQC010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015927 SAMN35438851-rid18359893.denovo.34, whole genome shotgun sequence	2153..2525																																		avrA	DAQIQC010000018.1	39551..40420	99.08	870	0						
GCA_032903045.1_PDT001776207.1_genomic.fna	Salmonella_enterica	0.5195	381.821 KB	6	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIQD010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015926 SAMN35438850-rid18359163.denovo.06, whole genome shotgun sequence	151991..152428	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIQD010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015926 SAMN35438850-rid18359163.denovo.35, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIQD010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015926 SAMN35438850-rid18359163.denovo.35, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIQD010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015926 SAMN35438850-rid18359163.guided.29, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIQD010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015926 SAMN35438850-rid18359163.guided.37, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIQD010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015926 SAMN35438850-rid18359163.guided.37, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIQD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015926 SAMN35438850-rid18359163.denovo.01, whole genome shotgun sequence	394293..394715	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIQD010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015926 SAMN35438850-rid18359163.guided.27, whole genome shotgun sequence	23055..23477	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIQD010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015926 SAMN35438850-rid18359163.denovo.36, whole genome shotgun sequence	1430..2635	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIQD010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015926 SAMN35438850-rid18359163.guided.43, whole genome shotgun sequence	1019..2224	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIQD010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015926 SAMN35438850-rid18359163.denovo.28, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	DAQIQD010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015926 SAMN35438850-rid18359163.denovo.35, whole genome shotgun sequence	1831..2092		enterobacteriales	IncFII	96.95	262 / 261	DAQIQD010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015926 SAMN35438850-rid18359163.guided.37, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	DAQIQD010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015926 SAMN35438850-rid18359163.denovo.34, whole genome shotgun sequence	2153..2525																																		avrA	DAQIQD010000017.1	39431..40300	99.08	870	0						
GCA_032903065.1_PDT001776204.1_genomic.fna	Salmonella_enterica	0.5198	196.644 KB	9	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIQE010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015965 SAMN35438882-rid18359883.denovo.15, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQIQE010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015965 SAMN35438882-rid18359883.guided.26, whole genome shotgun sequence	14361..14798	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	DAQIQE010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015965 SAMN35438882-rid18359883.denovo.49, whole genome shotgun sequence	1914..2595	enterobacteriales	IncFII	96.56	262 / 261	DAQIQE010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015965 SAMN35438882-rid18359883.denovo.32, whole genome shotgun sequence	36476..36737		enterobacteriales	IncX1	100	373 / 373	DAQIQE010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015965 SAMN35438882-rid18359883.denovo.40, whole genome shotgun sequence	2153..2525																																									avrA	DAQIQE010000027.1	39484..40353	99.655	870	0						
GCA_032903085.1_PDT001776205.1_genomic.fna	Salmonella_enterica	0.5195	266.763 KB	6	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIQF010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015929 SAMN35438852-rid18359153.denovo.09, whole genome shotgun sequence	16598..17035	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIQF010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015929 SAMN35438852-rid18359153.denovo.20, whole genome shotgun sequence	34192..35028	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIQF010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015929 SAMN35438852-rid18359153.denovo.20, whole genome shotgun sequence	35028..35831	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIQF010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015929 SAMN35438852-rid18359153.guided.32, whole genome shotgun sequence	5660..6097	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIQF010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015929 SAMN35438852-rid18359153.guided.40, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIQF010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015929 SAMN35438852-rid18359153.guided.40, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIQF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015929 SAMN35438852-rid18359153.denovo.01, whole genome shotgun sequence	394421..394843	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIQF010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015929 SAMN35438852-rid18359153.guided.31, whole genome shotgun sequence	10810..11232	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIQF010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015929 SAMN35438852-rid18359153.denovo.36, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIQF010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015929 SAMN35438852-rid18359153.guided.35, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIQF010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015929 SAMN35438852-rid18359153.denovo.26, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	DAQIQF010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015929 SAMN35438852-rid18359153.denovo.20, whole genome shotgun sequence	33308..33569		enterobacteriales	IncX1	100	373 / 373	DAQIQF010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015929 SAMN35438852-rid18359153.denovo.34, whole genome shotgun sequence	2153..2525																																									avrA	DAQIQF010000012.1	168819..169688	99.08	870	0						
GCA_032903105.1_PDT001776203.1_genomic.fna	Salmonella_enterica	0.5205	236.501 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIQG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015966 SAMN35438883-rid18359143.denovo.01, whole genome shotgun sequence	524941..525378	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIQG010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015966 SAMN35438883-rid18359143.guided.27, whole genome shotgun sequence	14362..14799	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIQG010000002.1	550819..551688	99.195	870	0						
GCA_032903125.1_PDT001776201.1_genomic.fna	Salmonella_enterica	0.5216	235.125 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIQI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015880 SAMN35438822-rid18359123.denovo.01, whole genome shotgun sequence	728170..728607	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIQI010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015880 SAMN35438822-rid18359123.guided.20, whole genome shotgun sequence	11508..11945	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIQI010000003.1	153057..153926	99.195	870	0						
GCA_032903145.1_PDT001776202.1_genomic.fna	Salmonella_enterica	0.5202	255.288 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIQH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015968 SAMN35438884-rid18359133.denovo.01, whole genome shotgun sequence	727770..728207	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIQH010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015968 SAMN35438884-rid18359133.guided.19, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIQH010000002.1	551169..552038	99.195	870	0						
GCA_032903165.1_PDT001776200.1_genomic.fna	Salmonella_enterica	0.5204	317.809 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIQJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015969 SAMN35438885-rid18359113.denovo.01, whole genome shotgun sequence	727770..728207	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIQJ010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015969 SAMN35438885-rid18359113.guided.18, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIQJ010000003.1	551169..552038	99.195	870	0						
GCA_032903185.1_PDT001776199.1_genomic.fna	Salmonella_enterica	0.5216	268.024 KB	7	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQIQL010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015970 SAMN35438886-rid18359873.denovo.11, whole genome shotgun sequence	52310..52747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQIQL010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015970 SAMN35438886-rid18359873.guided.24, whole genome shotgun sequence	32254..32691	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQIQL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015970 SAMN35438886-rid18359873.denovo.35, whole genome shotgun sequence	3345..3457																																																						avrA	DAQIQL010000012.1	145338..146207	99.425	870	0						
GCA_032903205.1_PDT001776198.1_genomic.fna	Salmonella_enterica	0.5217	312.582 KB	6	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQIQK010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015971 SAMN35438887-rid18359103.denovo.10, whole genome shotgun sequence	52310..52747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQIQK010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015971 SAMN35438887-rid18359103.guided.28, whole genome shotgun sequence	14398..14835	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQIQK010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015971 SAMN35438887-rid18359103.denovo.37, whole genome shotgun sequence	3345..3457																																																						avrA	DAQIQK010000011.1	145422..146291	99.425	870	0						
GCA_032903225.1_PDT001776196.1_genomic.fna	Salmonella_enterica	0.5196	322.651 KB	6	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIQP010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015973 SAMN35438889-rid18359863.denovo.11, whole genome shotgun sequence	16583..17020	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIQP010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015973 SAMN35438889-rid18359863.denovo.19, whole genome shotgun sequence	34202..35038	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIQP010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015973 SAMN35438889-rid18359863.denovo.19, whole genome shotgun sequence	35038..35841	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIQP010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015973 SAMN35438889-rid18359863.guided.26, whole genome shotgun sequence	7247..7684	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIQP010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015973 SAMN35438889-rid18359863.guided.36, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIQP010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015973 SAMN35438889-rid18359863.guided.36, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIQP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015973 SAMN35438889-rid18359863.denovo.01, whole genome shotgun sequence	394430..394852	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIQP010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015973 SAMN35438889-rid18359863.guided.34, whole genome shotgun sequence	3670..4092	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIQP010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015973 SAMN35438889-rid18359863.denovo.33, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIQP010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015973 SAMN35438889-rid18359863.guided.35, whole genome shotgun sequence	4117..5322	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIQP010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015973 SAMN35438889-rid18359863.denovo.25, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	DAQIQP010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015973 SAMN35438889-rid18359863.denovo.19, whole genome shotgun sequence	33318..33579		enterobacteriales	IncFII	96.95	262 / 261	DAQIQP010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015973 SAMN35438889-rid18359863.guided.36, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	DAQIQP010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015973 SAMN35438889-rid18359863.denovo.32, whole genome shotgun sequence	2153..2525																																		avrA	DAQIQP010000012.1	168957..169826	99.08	870	0						
GCA_032903245.1_PDT001776197.1_genomic.fna	Salmonella_enterica	0.5216	223.963 KB	8	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQIQM010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015972 SAMN35438888-rid18359093.denovo.11, whole genome shotgun sequence	52310..52747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQIQM010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015972 SAMN35438888-rid18359093.guided.25, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQIQM010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015972 SAMN35438888-rid18359093.denovo.40, whole genome shotgun sequence	3345..3457																																																						avrA	DAQIQM010000012.1	145338..146207	99.425	870	0						
GCA_032903265.1_PDT001776195.1_genomic.fna	Salmonella_enterica	0.5199	330.228 KB	6	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIQN010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015974 SAMN35438890-rid18359083.denovo.05, whole genome shotgun sequence	151992..152429	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIQN010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015974 SAMN35438890-rid18359083.denovo.19, whole genome shotgun sequence	34202..35038	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIQN010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015974 SAMN35438890-rid18359083.denovo.19, whole genome shotgun sequence	35038..35841	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIQN010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015974 SAMN35438890-rid18359083.guided.28, whole genome shotgun sequence	3152..3589	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIQN010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015974 SAMN35438890-rid18359083.guided.38, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIQN010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015974 SAMN35438890-rid18359083.guided.38, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIQN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015974 SAMN35438890-rid18359083.denovo.01, whole genome shotgun sequence	394430..394852	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIQN010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015974 SAMN35438890-rid18359083.guided.40, whole genome shotgun sequence	3139..3561	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIQN010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015974 SAMN35438890-rid18359083.denovo.36, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIQN010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015974 SAMN35438890-rid18359083.guided.37, whole genome shotgun sequence	4117..5322	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIQN010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015974 SAMN35438890-rid18359083.denovo.26, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	DAQIQN010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015974 SAMN35438890-rid18359083.denovo.19, whole genome shotgun sequence	33318..33579		enterobacteriales	IncFII	96.95	262 / 261	DAQIQN010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015974 SAMN35438890-rid18359083.guided.38, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	DAQIQN010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015974 SAMN35438890-rid18359083.denovo.35, whole genome shotgun sequence	2153..2525																																		avrA	DAQIQN010000017.1	39372..40241	99.08	870	0						
GCA_032903285.1_PDT001776193.1_genomic.fna	Salmonella_enterica	0.52	317.809 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIQQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015976 SAMN35438892-rid18359073.denovo.01, whole genome shotgun sequence	799062..799499	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIQQ010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015976 SAMN35438892-rid18359073.guided.17, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIQQ010000002.1	551339..552208	99.195	870	0						
GCA_032903305.1_PDT001776191.1_genomic.fna	Salmonella_enterica	0.5205	255.047 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIQT010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015978 SAMN35438894-rid18359053.denovo.04, whole genome shotgun sequence	141383..141820	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIQT010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015978 SAMN35438894-rid18359053.guided.24, whole genome shotgun sequence	10242..10679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIQT010000001.1	551169..552038	99.195	870	0						
GCA_032903325.1_PDT001776192.1_genomic.fna	Salmonella_enterica	0.5206	255.288 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIQR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015977 SAMN35438893-rid18359063.denovo.01, whole genome shotgun sequence	798729..799166	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIQR010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015977 SAMN35438893-rid18359063.guided.25, whole genome shotgun sequence	6983..7420	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIQR010000002.1	551169..552038	99.195	870	0						
GCA_032903345.1_PDT001776189.1_genomic.fna	Salmonella_enterica	0.5199	265.052 KB	6	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIQU010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.denovo.09, whole genome shotgun sequence	16370..16807	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIQU010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.denovo.21, whole genome shotgun sequence	34670..35506	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIQU010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.denovo.21, whole genome shotgun sequence	35506..36309	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIQU010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.guided.28, whole genome shotgun sequence	9092..9529	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIQU010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.guided.37, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIQU010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.guided.37, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQIQU010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.guided.38, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.75	804/804	DAQIQU010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.guided.38, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIQU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.denovo.01, whole genome shotgun sequence	394430..394852	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIQU010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.guided.51, whole genome shotgun sequence	42..464	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIQU010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.denovo.36, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIQU010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.guided.44, whole genome shotgun sequence	1663..2868	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIQU010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.denovo.27, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	DAQIQU010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.denovo.21, whole genome shotgun sequence	33786..34047		enterobacteriales	IncFII	96.95	262 / 261	DAQIQU010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.guided.37, whole genome shotgun sequence	4572..4833		enterobacteriales	IncFII	96.95	262 / 261	DAQIQU010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.guided.38, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	DAQIQU010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015979 SAMN35438895-rid18359843.denovo.35, whole genome shotgun sequence	2153..2525																											avrA	DAQIQU010000018.1	39451..40320	99.08	870	0						
GCA_032903365.1_PDT001776194.1_genomic.fna	Salmonella_enterica	0.5198	265.309 KB	6	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIQO010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015975 SAMN35438891-rid18359853.denovo.09, whole genome shotgun sequence	16782..17219	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIQO010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015975 SAMN35438891-rid18359853.denovo.20, whole genome shotgun sequence	34202..35038	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIQO010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015975 SAMN35438891-rid18359853.denovo.20, whole genome shotgun sequence	35038..35841	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIQO010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015975 SAMN35438891-rid18359853.guided.27, whole genome shotgun sequence	9791..10228	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIQO010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015975 SAMN35438891-rid18359853.guided.38, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIQO010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015975 SAMN35438891-rid18359853.guided.38, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIQO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015975 SAMN35438891-rid18359853.denovo.01, whole genome shotgun sequence	394302..394724	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIQO010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015975 SAMN35438891-rid18359853.guided.35, whole genome shotgun sequence	4066..4488	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIQO010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015975 SAMN35438891-rid18359853.denovo.36, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIQO010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015975 SAMN35438891-rid18359853.guided.37, whole genome shotgun sequence	4117..5322	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIQO010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015975 SAMN35438891-rid18359853.denovo.28, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	DAQIQO010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015975 SAMN35438891-rid18359853.denovo.20, whole genome shotgun sequence	33318..33579		enterobacteriales	IncFII	96.95	262 / 261	DAQIQO010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015975 SAMN35438891-rid18359853.guided.38, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	DAQIQO010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015975 SAMN35438891-rid18359853.denovo.34, whole genome shotgun sequence	2153..2525																																		avrA	DAQIQO010000012.1	169095..169964	99.08	870	0						
GCA_032903385.1_PDT001776190.1_genomic.fna	Salmonella_enterica	0.5222	282.521 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIQS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015882 SAMN35438823-rid18359043.denovo.01, whole genome shotgun sequence	772111..772548	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIQS010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015882 SAMN35438823-rid18359043.guided.26, whole genome shotgun sequence	3560..3997	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIQS010000003.1	39428..40297	99.195	870	0						
GCA_032903405.1_PDT001776188.1_genomic.fna	Salmonella_enterica	0.5206	317.809 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIQW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015980 SAMN35438896-rid18359033.denovo.01, whole genome shotgun sequence	798729..799166	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIQW010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015980 SAMN35438896-rid18359033.guided.20, whole genome shotgun sequence	2005..2442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIQW010000002.1	551169..552038	99.195	870	0						
GCA_032903425.1_PDT001776187.1_genomic.fna	Salmonella_enterica	0.5206	312.619 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIQV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015981 SAMN35438897-rid18359023.denovo.01, whole genome shotgun sequence	798729..799166	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIQV010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015981 SAMN35438897-rid18359023.guided.23, whole genome shotgun sequence	2651..3088	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIQV010000002.1	551169..552038	99.195	870	0						
GCA_032903445.1_PDT001776184.1_genomic.fna	Salmonella_enterica	0.5212	215.472 KB	9	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQIQZ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015984 SAMN35438900-rid18359823.denovo.09, whole genome shotgun sequence	52310..52747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQIQZ010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015984 SAMN35438900-rid18359823.guided.24, whole genome shotgun sequence	26405..26842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQIQZ010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015984 SAMN35438900-rid18359823.denovo.41, whole genome shotgun sequence	3345..3457																																																						avrA	DAQIQZ010000010.1	145454..146323	99.425	870	0						
GCA_032903465.1_PDT001776185.1_genomic.fna	Salmonella_enterica	0.5214	223.793 KB	8	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQIQY010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015983 SAMN35438899-rid18359013.denovo.11, whole genome shotgun sequence	52310..52747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQIQY010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015983 SAMN35438899-rid18359013.guided.26, whole genome shotgun sequence	7098..7535	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQIQY010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015983 SAMN35438899-rid18359013.denovo.38, whole genome shotgun sequence	3345..3457																																																						avrA	DAQIQY010000012.1	145338..146207	99.425	870	0						
GCA_032903485.1_PDT001776183.1_genomic.fna	Salmonella_enterica	0.5216	238.406 KB	8	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQIRA010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015985 SAMN35438901-rid18359003.denovo.11, whole genome shotgun sequence	52310..52747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQIRA010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015985 SAMN35438901-rid18359003.guided.30, whole genome shotgun sequence	12178..12615	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQIRA010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015985 SAMN35438901-rid18359003.denovo.38, whole genome shotgun sequence	3345..3457																																																						avrA	DAQIRA010000012.1	145338..146207	99.425	870	0						
GCA_032903505.1_PDT001776182.1_genomic.fna	Salmonella_enterica	0.5212	268.017 KB	7	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQIRB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015986 SAMN35438902-rid18358993.denovo.01, whole genome shotgun sequence	386822..387259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQIRB010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015986 SAMN35438902-rid18358993.guided.25, whole genome shotgun sequence	9678..10115	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIRB010000010.1	145426..146295	99.425	870	0						
GCA_032903525.1_PDT001776180.1_genomic.fna	Salmonella_enterica	0.5214	223.963 KB	7	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQIRD010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015988 SAMN35438904-rid18358973.denovo.03, whole genome shotgun sequence	229755..230192	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQIRD010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015988 SAMN35438904-rid18358973.guided.30, whole genome shotgun sequence	2880..3317	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIRD010000009.1	145390..146259	99.425	870	0						
GCA_032903545.1_PDT001776179.1_genomic.fna	Salmonella_enterica	0.5219	322.34 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIRE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015883 SAMN35438824-rid18359813.denovo.01, whole genome shotgun sequence	728318..728755	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIRE010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015883 SAMN35438824-rid18359813.guided.26, whole genome shotgun sequence	5660..6097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIRE010000003.1	39589..40458	99.195	870	0						
GCA_032903555.1_PDT001776181.1_genomic.fna	Salmonella_enterica	0.5212	273.953 KB	7	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQIRC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015987 SAMN35438903-rid18358983.denovo.01, whole genome shotgun sequence	386822..387259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQIRC010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015987 SAMN35438903-rid18358983.guided.32, whole genome shotgun sequence	2479..2916	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIRC010000016.1	39350..40219	99.425	870	0						
GCA_032903585.1_PDT001776178.1_genomic.fna	Salmonella_enterica	0.5205	337.25 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIRF010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015989 SAMN35438905-rid18358963.denovo.04, whole genome shotgun sequence	141383..141820	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIRF010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015989 SAMN35438905-rid18358963.guided.23, whole genome shotgun sequence	7404..7841	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIRF010000002.1	551334..552203	99.195	870	0						
GCA_032903605.1_PDT001776186.1_genomic.fna	Salmonella_enterica	0.5204	317.809 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIQX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015982 SAMN35438898-rid18359833.denovo.01, whole genome shotgun sequence	798729..799166	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIQX010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015982 SAMN35438898-rid18359833.guided.22, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIQX010000002.1	551339..552208	99.195	870	0						
GCA_032903625.1_PDT001776175.1_genomic.fna	Salmonella_enterica	0.5212	215.472 KB	8	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQIRI010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015930 SAMN35438853-rid18358943.denovo.08, whole genome shotgun sequence	52310..52747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQIRI010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015930 SAMN35438853-rid18358943.guided.22, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQIRI010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015930 SAMN35438853-rid18358943.denovo.40, whole genome shotgun sequence	3345..3457																																																						avrA	DAQIRI010000009.1	145338..146207	99.425	870	0						
GCA_032903645.1_PDT001776176.1_genomic.fna	Salmonella_enterica	0.5207	363.228 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIRH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015991 SAMN35438907-rid18359803.denovo.01, whole genome shotgun sequence	727905..728342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIRH010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015991 SAMN35438907-rid18359803.guided.24, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIRH010000002.1	551054..551923	99.195	870	0						
GCA_032903665.1_PDT001776174.1_genomic.fna	Salmonella_enterica	0.5194	330.564 KB	6	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIRJ010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015931 SAMN35438854-rid18359793.denovo.05, whole genome shotgun sequence	151991..152428	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRJ010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015931 SAMN35438854-rid18359793.denovo.20, whole genome shotgun sequence	34670..35506	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRJ010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015931 SAMN35438854-rid18359793.denovo.20, whole genome shotgun sequence	35506..36309	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIRJ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015931 SAMN35438854-rid18359793.guided.25, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRJ010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015931 SAMN35438854-rid18359793.guided.36, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRJ010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015931 SAMN35438854-rid18359793.guided.36, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIRJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015931 SAMN35438854-rid18359793.denovo.01, whole genome shotgun sequence	394421..394843	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIRJ010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015931 SAMN35438854-rid18359793.guided.41, whole genome shotgun sequence	42..464	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIRJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015931 SAMN35438854-rid18359793.denovo.34, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIRJ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015931 SAMN35438854-rid18359793.guided.35, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIRJ010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015931 SAMN35438854-rid18359793.denovo.27, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	DAQIRJ010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015931 SAMN35438854-rid18359793.denovo.20, whole genome shotgun sequence	33786..34047		enterobacteriales	IncFII	96.95	262 / 261	DAQIRJ010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015931 SAMN35438854-rid18359793.guided.36, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	DAQIRJ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015931 SAMN35438854-rid18359793.denovo.33, whole genome shotgun sequence	2153..2525																																		avrA	DAQIRJ010000011.1	168819..169688	99.08	870	0						
GCA_032903685.1_PDT001776177.1_genomic.fna	Salmonella_enterica	0.5206	318.95 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIRG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015990 SAMN35438906-rid18358953.denovo.01, whole genome shotgun sequence	727905..728342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIRG010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015990 SAMN35438906-rid18358953.guided.23, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIRG010000002.1	551339..552208	99.195	870	0						
GCA_032903705.1_PDT001776171.1_genomic.fna	Salmonella_enterica	0.5194	482.489 KB	5	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIRM010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015934 SAMN35438856-rid18359773.denovo.07, whole genome shotgun sequence	151991..152428	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRM010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015934 SAMN35438856-rid18359773.denovo.19, whole genome shotgun sequence	34202..35038	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRM010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015934 SAMN35438856-rid18359773.denovo.19, whole genome shotgun sequence	35038..35841	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIRM010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015934 SAMN35438856-rid18359773.guided.22, whole genome shotgun sequence	16218..16655	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRM010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015934 SAMN35438856-rid18359773.guided.32, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRM010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015934 SAMN35438856-rid18359773.guided.32, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIRM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015934 SAMN35438856-rid18359773.denovo.01, whole genome shotgun sequence	394421..394843	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIRM010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015934 SAMN35438856-rid18359773.guided.29, whole genome shotgun sequence	9132..9554	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIRM010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015934 SAMN35438856-rid18359773.denovo.31, whole genome shotgun sequence	1390..2595	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIRM010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015934 SAMN35438856-rid18359773.guided.36, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIRM010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015934 SAMN35438856-rid18359773.denovo.18, whole genome shotgun sequence	39913..40594	enterobacteriales	IncFII	96.95	262 / 261	DAQIRM010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015934 SAMN35438856-rid18359773.denovo.19, whole genome shotgun sequence	33318..33579		enterobacteriales	IncFII	96.95	262 / 261	DAQIRM010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015934 SAMN35438856-rid18359773.guided.32, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	DAQIRM010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015934 SAMN35438856-rid18359773.denovo.30, whole genome shotgun sequence	2153..2525																																		avrA	DAQIRM010000010.1	169095..169964	99.08	870	0						
GCA_032903725.1_PDT001776169.1_genomic.fna	Salmonella_enterica	0.5199	256.857 KB	6	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIRP010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015937 SAMN35438858-rid18359763.denovo.08, whole genome shotgun sequence	16778..17215	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRP010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015937 SAMN35438858-rid18359763.denovo.21, whole genome shotgun sequence	34202..35038	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRP010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015937 SAMN35438858-rid18359763.denovo.21, whole genome shotgun sequence	35038..35841	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIRP010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015937 SAMN35438858-rid18359763.guided.30, whole genome shotgun sequence	1734..2171	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRP010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015937 SAMN35438858-rid18359763.guided.39, whole genome shotgun sequence	2059..2895	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRP010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015937 SAMN35438858-rid18359763.guided.39, whole genome shotgun sequence	1256..2059	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIRP010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015937 SAMN35438858-rid18359763.denovo.02, whole genome shotgun sequence	363047..363469	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIRP010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015937 SAMN35438858-rid18359763.guided.42, whole genome shotgun sequence	574..996	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIRP010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015937 SAMN35438858-rid18359763.denovo.36, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIRP010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015937 SAMN35438858-rid18359763.guided.35, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIRP010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015937 SAMN35438858-rid18359763.denovo.27, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	DAQIRP010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015937 SAMN35438858-rid18359763.denovo.21, whole genome shotgun sequence	33318..33579		enterobacteriales	IncFII	96.95	262 / 261	DAQIRP010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015937 SAMN35438858-rid18359763.guided.39, whole genome shotgun sequence	3518..3779		enterobacteriales	IncX1	100	373 / 373	DAQIRP010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015937 SAMN35438858-rid18359763.denovo.34, whole genome shotgun sequence	2153..2525																																		avrA	DAQIRP010000012.1	169095..169964	99.08	870	0						
GCA_032903745.1_PDT001776170.1_genomic.fna	Salmonella_enterica	0.5195	483.056 KB	5	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIRN010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015935 SAMN35438857-rid18358923.denovo.08, whole genome shotgun sequence	151991..152428	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRN010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015935 SAMN35438857-rid18358923.denovo.26, whole genome shotgun sequence	17235..18071	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRN010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015935 SAMN35438857-rid18358923.denovo.26, whole genome shotgun sequence	18071..18874	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIRN010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015935 SAMN35438857-rid18358923.guided.25, whole genome shotgun sequence	9104..9541	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRN010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015935 SAMN35438857-rid18358923.guided.35, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRN010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015935 SAMN35438857-rid18358923.guided.35, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIRN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015935 SAMN35438857-rid18358923.denovo.01, whole genome shotgun sequence	394421..394843	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIRN010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015935 SAMN35438857-rid18358923.guided.33, whole genome shotgun sequence	4337..4759	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIRN010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015935 SAMN35438857-rid18358923.denovo.36, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIRN010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015935 SAMN35438857-rid18358923.guided.34, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIRN010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015935 SAMN35438857-rid18358923.denovo.24, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	DAQIRN010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015935 SAMN35438857-rid18358923.denovo.26, whole genome shotgun sequence	16351..16612		enterobacteriales	IncFII	96.95	262 / 261	DAQIRN010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015935 SAMN35438857-rid18358923.guided.35, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	DAQIRN010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015935 SAMN35438857-rid18358923.denovo.32, whole genome shotgun sequence	2153..2525																																		avrA	DAQIRN010000017.1	39350..40219	99.08	870	0						
GCA_032903765.1_PDT001776172.1_genomic.fna	Salmonella_enterica	0.5195	383.266 KB	6	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIRL010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015932 SAMN35438855-rid18359783.denovo.06, whole genome shotgun sequence	152399..152836	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRL010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015932 SAMN35438855-rid18359783.denovo.19, whole genome shotgun sequence	34186..35022	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRL010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015932 SAMN35438855-rid18359783.denovo.19, whole genome shotgun sequence	35022..35825	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIRL010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015932 SAMN35438855-rid18359783.guided.26, whole genome shotgun sequence	9818..10255	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRL010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015932 SAMN35438855-rid18359783.guided.36, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRL010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015932 SAMN35438855-rid18359783.guided.36, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIRL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015932 SAMN35438855-rid18359783.denovo.01, whole genome shotgun sequence	394421..394843	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIRL010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015932 SAMN35438855-rid18359783.guided.25, whole genome shotgun sequence	21946..22368	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIRL010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015932 SAMN35438855-rid18359783.denovo.32, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIRL010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015932 SAMN35438855-rid18359783.guided.33, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIRL010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015932 SAMN35438855-rid18359783.denovo.27, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	DAQIRL010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015932 SAMN35438855-rid18359783.denovo.19, whole genome shotgun sequence	33302..33563		enterobacteriales	IncFII	96.95	262 / 261	DAQIRL010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015932 SAMN35438855-rid18359783.guided.36, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	DAQIRL010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015932 SAMN35438855-rid18359783.denovo.31, whole genome shotgun sequence	2153..2525																																		avrA	DAQIRL010000011.1	168819..169688	99.08	870	0						
GCA_032903785.1_PDT001776173.1_genomic.fna	Salmonella_enterica	0.52	224.732 KB	9	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIRK010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015874 SAMN35438819-rid18358933.denovo.17, whole genome shotgun sequence	82764..83201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQIRK010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015874 SAMN35438819-rid18358933.guided.29, whole genome shotgun sequence	11341..11778	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	DAQIRK010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015874 SAMN35438819-rid18358933.denovo.35, whole genome shotgun sequence	11248..11507	enterobacteriales	IncX1	100	373 / 373	DAQIRK010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015874 SAMN35438819-rid18358933.denovo.41, whole genome shotgun sequence	2153..2525																																																avrA	DAQIRK010000004.1	101811..102680	99.655	870	0						
GCA_032903805.1_PDT001776167.1_genomic.fna	Salmonella_enterica	0.5193	404.693 KB	5	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIRQ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015939 SAMN35438860-rid18359753.denovo.06, whole genome shotgun sequence	152399..152836	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRQ010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015939 SAMN35438860-rid18359753.denovo.42, whole genome shotgun sequence	20..856	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRQ010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015939 SAMN35438860-rid18359753.denovo.42, whole genome shotgun sequence	856..1659	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIRQ010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015939 SAMN35438860-rid18359753.guided.27, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRQ010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015939 SAMN35438860-rid18359753.guided.43, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRQ010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015939 SAMN35438860-rid18359753.guided.43, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIRQ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015939 SAMN35438860-rid18359753.denovo.02, whole genome shotgun sequence	362952..363374	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIRQ010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015939 SAMN35438860-rid18359753.guided.26, whole genome shotgun sequence	19303..19725	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIRQ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015939 SAMN35438860-rid18359753.denovo.35, whole genome shotgun sequence	1420..2625	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIRQ010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015939 SAMN35438860-rid18359753.guided.36, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIRQ010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015939 SAMN35438860-rid18359753.denovo.31, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	DAQIRQ010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015939 SAMN35438860-rid18359753.denovo.21, whole genome shotgun sequence	33236..33497		enterobacteriales	IncX1	100	373 / 373	DAQIRQ010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015939 SAMN35438860-rid18359753.denovo.33, whole genome shotgun sequence	2153..2525																																									avrA	DAQIRQ010000011.1	168819..169688	99.08	870	0						
GCA_032903825.1_PDT001776166.1_genomic.fna	Salmonella_enterica	0.5213	223.963 KB	8	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQIRR010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015940 SAMN35438861-rid18358913.denovo.11, whole genome shotgun sequence	52310..52747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQIRR010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015940 SAMN35438861-rid18358913.guided.21, whole genome shotgun sequence	4979..5416	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQIRR010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015940 SAMN35438861-rid18358913.denovo.37, whole genome shotgun sequence	3345..3457																																																						avrA	DAQIRR010000012.1	145338..146207	99.425	870	0						
GCA_032903845.1_PDT001776168.1_genomic.fna	Salmonella_enterica	0.5214	477.289 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQIRO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015938 SAMN35438859-rid18358703.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQIRO010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain 230015938 SAMN35438859-rid18358703.guided.15, whole genome shotgun sequence	24353..24790	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIRO010000012.1	28824..29693	99.54	870	0						
GCA_032903865.1_PDT001776165.1_genomic.fna	Salmonella_enterica	0.5196	196.644 KB	8	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIRS010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015941 SAMN35438862-rid18358903.denovo.14, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQIRS010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015941 SAMN35438862-rid18358903.guided.32, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	DAQIRS010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015941 SAMN35438862-rid18358903.denovo.51, whole genome shotgun sequence	1831..2512	enterobacteriales	IncFII	96.56	262 / 261	DAQIRS010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015941 SAMN35438862-rid18358903.denovo.29, whole genome shotgun sequence	32119..32380		enterobacteriales	IncX1	100	373 / 373	DAQIRS010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015941 SAMN35438862-rid18358903.denovo.40, whole genome shotgun sequence	2153..2525																																									avrA	DAQIRS010000016.1	102495..103364	99.655	870	0						
GCA_032903885.1_PDT001776164.1_genomic.fna	Salmonella_enterica	0.5195	237.196 KB	7	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIRV010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015942 SAMN35438863-rid18359743.denovo.13, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQIRV010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015942 SAMN35438863-rid18359743.guided.27, whole genome shotgun sequence	13734..14171	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	DAQIRV010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015942 SAMN35438863-rid18359743.denovo.46, whole genome shotgun sequence	1914..2595	enterobacteriales	IncFII	96.56	262 / 261	DAQIRV010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015942 SAMN35438863-rid18359743.denovo.28, whole genome shotgun sequence	32119..32380		enterobacteriales	IncX1	100	373 / 373	DAQIRV010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015942 SAMN35438863-rid18359743.denovo.37, whole genome shotgun sequence	2690..3062																																									avrA	DAQIRV010000024.1	39484..40353	99.655	870	0						
GCA_032903905.1_PDT001776163.1_genomic.fna	Salmonella_enterica	0.5194	239.21 KB	7	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIRT010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015943 SAMN35438864-rid18358893.denovo.13, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQIRT010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015943 SAMN35438864-rid18358893.guided.36, whole genome shotgun sequence	320..757	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	DAQIRT010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015943 SAMN35438864-rid18358893.denovo.44, whole genome shotgun sequence	1831..2512	enterobacteriales	IncFII	96.56	262 / 261	DAQIRT010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015943 SAMN35438864-rid18358893.denovo.30, whole genome shotgun sequence	32119..32380		enterobacteriales	IncX1	100	373 / 373	DAQIRT010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky strain 230015943 SAMN35438864-rid18358893.denovo.40, whole genome shotgun sequence	2153..2525																																									avrA	DAQIRT010000025.1	39484..40353	99.655	870	0						
GCA_032903925.1_PDT001776162.1_genomic.fna	Salmonella_enterica	0.5201	224.751 KB	9	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIRU010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015876 SAMN35438820-rid18359733.denovo.16, whole genome shotgun sequence	82764..83201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQIRU010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015876 SAMN35438820-rid18359733.guided.37, whole genome shotgun sequence	2378..2815	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	DAQIRU010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015876 SAMN35438820-rid18359733.denovo.36, whole genome shotgun sequence	11248..11507	enterobacteriales	IncX1	100	373 / 373	DAQIRU010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015876 SAMN35438820-rid18359733.denovo.44, whole genome shotgun sequence	2153..2525																																																avrA	DAQIRU010000008.1	39484..40353	99.655	870	0						
GCA_032903945.1_PDT001776161.1_genomic.fna	Salmonella_enterica	0.5199	322.651 KB	6	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIRW010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015944 SAMN35438865-rid18358883.denovo.04, whole genome shotgun sequence	151991..152428	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRW010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015944 SAMN35438865-rid18358883.denovo.20, whole genome shotgun sequence	33995..34831	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRW010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015944 SAMN35438865-rid18358883.denovo.20, whole genome shotgun sequence	34831..35634	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIRW010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015944 SAMN35438865-rid18358883.guided.33, whole genome shotgun sequence	5701..6138	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRW010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015944 SAMN35438865-rid18358883.guided.41, whole genome shotgun sequence	1344..2180	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRW010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015944 SAMN35438865-rid18358883.guided.41, whole genome shotgun sequence	541..1344	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIRW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015944 SAMN35438865-rid18358883.denovo.01, whole genome shotgun sequence	394436..394858	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIRW010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015944 SAMN35438865-rid18358883.guided.35, whole genome shotgun sequence	4337..4759	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIRW010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015944 SAMN35438865-rid18358883.denovo.36, whole genome shotgun sequence	1430..2635	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIRW010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015944 SAMN35438865-rid18358883.guided.37, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIRW010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015944 SAMN35438865-rid18358883.denovo.25, whole genome shotgun sequence	2012..2693	enterobacteriales	IncFII	96.95	262 / 261	DAQIRW010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015944 SAMN35438865-rid18358883.denovo.20, whole genome shotgun sequence	33111..33372		enterobacteriales	IncFII	96.95	262 / 261	DAQIRW010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015944 SAMN35438865-rid18358883.guided.41, whole genome shotgun sequence	2803..3064		enterobacteriales	IncX1	100	373 / 373	DAQIRW010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015944 SAMN35438865-rid18358883.denovo.34, whole genome shotgun sequence	2153..2525																																		avrA	DAQIRW010000012.1	169095..169964	99.08	870	0						
GCA_032903965.1_PDT001776160.1_genomic.fna	Salmonella_enterica	0.5197	405.034 KB	5	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIRX010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015945 SAMN35438866-rid18358873.denovo.08, whole genome shotgun sequence	16598..17035	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRX010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015945 SAMN35438866-rid18358873.denovo.30, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRX010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015945 SAMN35438866-rid18358873.denovo.30, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIRX010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015945 SAMN35438866-rid18358873.guided.22, whole genome shotgun sequence	11236..11673	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRX010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015945 SAMN35438866-rid18358873.guided.33, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRX010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015945 SAMN35438866-rid18358873.guided.33, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIRX010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015945 SAMN35438866-rid18358873.denovo.02, whole genome shotgun sequence	394421..394843	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIRX010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015945 SAMN35438866-rid18358873.guided.29, whole genome shotgun sequence	4337..4759	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIRX010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015945 SAMN35438866-rid18358873.denovo.31, whole genome shotgun sequence	1420..2625	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIRX010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015945 SAMN35438866-rid18358873.guided.32, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIRX010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015945 SAMN35438866-rid18358873.denovo.16, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	DAQIRX010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015945 SAMN35438866-rid18358873.denovo.30, whole genome shotgun sequence	1831..2092		enterobacteriales	IncFII	96.95	262 / 261	DAQIRX010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015945 SAMN35438866-rid18358873.guided.33, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	DAQIRX010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015945 SAMN35438866-rid18358873.denovo.28, whole genome shotgun sequence	2153..2525																																		avrA	DAQIRX010000010.1	168819..169688	99.08	870	0						
GCA_032903985.1_PDT001776159.1_genomic.fna	Salmonella_enterica	0.5195	404.703 KB	5	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIRY010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015946 SAMN35438867-rid18359723.denovo.09, whole genome shotgun sequence	16875..17312	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRY010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015946 SAMN35438867-rid18359723.denovo.34, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRY010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015946 SAMN35438867-rid18359723.denovo.34, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIRY010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015946 SAMN35438867-rid18359723.guided.25, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRY010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015946 SAMN35438867-rid18359723.guided.35, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRY010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015946 SAMN35438867-rid18359723.guided.35, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIRY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015946 SAMN35438867-rid18359723.denovo.01, whole genome shotgun sequence	394421..394843	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIRY010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015946 SAMN35438867-rid18359723.guided.19, whole genome shotgun sequence	33269..33691	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIRY010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015946 SAMN35438867-rid18359723.denovo.33, whole genome shotgun sequence	1420..2625	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIRY010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015946 SAMN35438867-rid18359723.guided.40, whole genome shotgun sequence	1704..2909	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIRY010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015946 SAMN35438867-rid18359723.denovo.26, whole genome shotgun sequence	1831..2512	enterobacteriales	IncFII	96.95	262 / 261	DAQIRY010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015946 SAMN35438867-rid18359723.denovo.34, whole genome shotgun sequence	1831..2092		enterobacteriales	IncFII	96.95	262 / 261	DAQIRY010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015946 SAMN35438867-rid18359723.guided.35, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	DAQIRY010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015946 SAMN35438867-rid18359723.denovo.32, whole genome shotgun sequence	2153..2525																																		avrA	DAQIRY010000011.1	169095..169964	99.08	870	0						
GCA_032904005.1_PDT001776158.1_genomic.fna	Salmonella_enterica	0.5196	274.644 KB	6	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIRZ010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015947 SAMN35438868-rid18358693.denovo.10, whole genome shotgun sequence	16598..17035	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRZ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015947 SAMN35438868-rid18358693.denovo.37, whole genome shotgun sequence	2707..3543	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRZ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015947 SAMN35438868-rid18358693.denovo.37, whole genome shotgun sequence	3543..4346	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQIRZ010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015947 SAMN35438868-rid18358693.guided.25, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIRZ010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015947 SAMN35438868-rid18358693.guided.41, whole genome shotgun sequence	1938..2774	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIRZ010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015947 SAMN35438868-rid18358693.guided.41, whole genome shotgun sequence	1135..1938	Streptomycin	AF321551	fosA7	96.22	423/423	DAQIRZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015947 SAMN35438868-rid18358693.denovo.01, whole genome shotgun sequence	394421..394843	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQIRZ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015947 SAMN35438868-rid18358693.guided.23, whole genome shotgun sequence	37725..38147	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQIRZ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015947 SAMN35438868-rid18358693.denovo.36, whole genome shotgun sequence	1465..2670	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQIRZ010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015947 SAMN35438868-rid18358693.guided.40, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQIRZ010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015947 SAMN35438868-rid18358693.denovo.28, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	DAQIRZ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015947 SAMN35438868-rid18358693.denovo.37, whole genome shotgun sequence	1823..2084		enterobacteriales	IncFII	96.95	262 / 261	DAQIRZ010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015947 SAMN35438868-rid18358693.guided.41, whole genome shotgun sequence	3397..3658		enterobacteriales	IncX1	100	373 / 373	DAQIRZ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015947 SAMN35438868-rid18358693.denovo.35, whole genome shotgun sequence	2153..2525																																		avrA	DAQIRZ010000021.1	39551..40420	99.08	870	0						
GCA_032904025.1_PDT001776157.1_genomic.fna	Salmonella_enterica	0.5195	256.425 KB	7	aroC_347,dnaN_325,hemD_93,hisD_412,purE_363,sucA_132,thrA_168	1298	35:z4,z23:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,fosA7,fosA7,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_347	dnaN	100	100	dnaN_325	hemD	100	100	hemD_93	hisD	100	100	hisD_412	purE	100	100	purE_363	sucA	100	100	sucA_132	thrA	100	100	thrA_168	35	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Alachua		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQISA010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015949 SAMN35438869-rid18359713.denovo.09, whole genome shotgun sequence	16854..17291	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQISA010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015949 SAMN35438869-rid18359713.denovo.24, whole genome shotgun sequence	34017..34853	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQISA010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015949 SAMN35438869-rid18359713.denovo.24, whole genome shotgun sequence	34853..35656	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQISA010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015949 SAMN35438869-rid18359713.guided.27, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQISA010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015949 SAMN35438869-rid18359713.guided.41, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQISA010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015949 SAMN35438869-rid18359713.guided.41, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	fosA7	96.22	423/423	DAQISA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015949 SAMN35438869-rid18359713.denovo.01, whole genome shotgun sequence	394421..394843	Fosfomycin	LAPJ01000014	fosA7	96.22	423/423	DAQISA010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015949 SAMN35438869-rid18359713.guided.34, whole genome shotgun sequence	8102..8524	Fosfomycin	LAPJ01000014	tet(B)	100	1206/1206	DAQISA010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015949 SAMN35438869-rid18359713.denovo.37, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	DAQISA010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015949 SAMN35438869-rid18359713.guided.36, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	DAQISA010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015949 SAMN35438869-rid18359713.denovo.22, whole genome shotgun sequence	39913..40594	enterobacteriales	IncFII	96.95	262 / 261	DAQISA010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015949 SAMN35438869-rid18359713.denovo.24, whole genome shotgun sequence	33133..33394		enterobacteriales	IncFII	96.95	262 / 261	DAQISA010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015949 SAMN35438869-rid18359713.guided.41, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	DAQISA010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Alachua strain 230015949 SAMN35438869-rid18359713.denovo.35, whole genome shotgun sequence	2153..2525																																		avrA	DAQISA010000020.1	39431..40300	99.08	870	0						
GCA_032904045.1_PDT001776156.1_genomic.fna	Salmonella_enterica	0.5204	317.809 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQISC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015951 SAMN35438870-rid18358863.denovo.01, whole genome shotgun sequence	772254..772691	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQISC010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015951 SAMN35438870-rid18358863.guided.23, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQISC010000002.1	551339..552208	99.195	870	0						
GCA_032904065.1_PDT001776155.1_genomic.fna	Salmonella_enterica	0.5219	255.047 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQISB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015952 SAMN35438871-rid18358853.denovo.01, whole genome shotgun sequence	727904..728341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQISB010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015952 SAMN35438871-rid18358853.guided.27, whole genome shotgun sequence	7709..8146	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQISB010000003.1	39580..40449	99.195	870	0						
GCA_032904085.1_PDT001776154.1_genomic.fna	Salmonella_enterica	0.5215	276.631 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQISD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015955 SAMN35438872-rid18359703.denovo.01, whole genome shotgun sequence	772111..772548	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQISD010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015955 SAMN35438872-rid18359703.guided.23, whole genome shotgun sequence	9662..10099	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQISD010000003.1	39428..40297	99.195	870	0						
GCA_032904105.1_PDT001776153.1_genomic.fna	Salmonella_enterica	0.5215	276.631 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQISE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015956 SAMN35438873-rid18358843.denovo.01, whole genome shotgun sequence	727904..728341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQISE010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015956 SAMN35438873-rid18358843.guided.22, whole genome shotgun sequence	12478..12915	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQISE010000002.1	585339..586208	99.195	870	0						
GCA_032904125.1_PDT001776152.1_genomic.fna	Salmonella_enterica	0.5201	363.518 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQISF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015957 SAMN35438874-rid18359693.denovo.01, whole genome shotgun sequence	800277..800714	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQISF010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015957 SAMN35438874-rid18359693.guided.16, whole genome shotgun sequence	15160..15597	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQISF010000002.1	551329..552198	99.195	870	0						
GCA_032904145.1_PDT001776150.1_genomic.fna	Salmonella_enterica	0.5204	317.809 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQISH010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015958 SAMN35438875-rid18358833.denovo.04, whole genome shotgun sequence	141383..141820	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQISH010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015958 SAMN35438875-rid18358833.guided.24, whole genome shotgun sequence	14360..14797	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQISH010000001.1	551339..552208	99.195	870	0						
GCA_032904165.1_PDT001776151.1_genomic.fna	Salmonella_enterica	0.5219	276.631 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQISG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015879 SAMN35438821-rid18359683.denovo.01, whole genome shotgun sequence	772111..772548	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQISG010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015879 SAMN35438821-rid18359683.guided.23, whole genome shotgun sequence	5290..5727	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQISG010000003.1	153446..154315	99.195	870	0						
GCA_032904185.1_PDT001776149.1_genomic.fna	Salmonella_enterica	0.5201	320.733 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQISI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015959 SAMN35438876-rid18359673.denovo.01, whole genome shotgun sequence	727905..728342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQISI010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015959 SAMN35438876-rid18359673.guided.18, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQISI010000003.1	551168..552037	99.195	870	0						
GCA_032904205.1_PDT001776148.1_genomic.fna	Salmonella_enterica	0.5203	254.894 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQISJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015960 SAMN35438877-rid18358683.denovo.01, whole genome shotgun sequence	727905..728342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQISJ010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015960 SAMN35438877-rid18358683.guided.18, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQISJ010000002.1	504241..505110	99.195	870	0						
GCA_032904225.1_PDT001776147.1_genomic.fna	Salmonella_enterica	0.5204	255.288 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQISK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015961 SAMN35438878-rid18359663.denovo.01, whole genome shotgun sequence	727905..728342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQISK010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015961 SAMN35438878-rid18359663.guided.26, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQISK010000002.1	551169..552038	99.195	870	0						
GCA_032904245.1_PDT001776146.1_genomic.fna	Salmonella_enterica	0.5215	235.125 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQISL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015962 SAMN35438879-rid18358823.denovo.01, whole genome shotgun sequence	727904..728341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQISL010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka strain 230015962 SAMN35438879-rid18358823.guided.21, whole genome shotgun sequence	14362..14799	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQISL010000003.1	39526..40395	99.195	870	0						
GCA_032904265.1_PDT001776145.1_genomic.fna	Salmonella_enterica	0.5213	268.024 KB	7	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQISN010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015963 SAMN35438880-rid18358813.denovo.12, whole genome shotgun sequence	52310..52747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQISN010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015963 SAMN35438880-rid18358813.guided.21, whole genome shotgun sequence	28861..29298	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQISN010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015963 SAMN35438880-rid18358813.denovo.36, whole genome shotgun sequence	3345..3457																																																						avrA	DAQISN010000013.1	145338..146207	99.425	870	0						
GCA_032904285.1_PDT001776144.1_genomic.fna	Salmonella_enterica	0.521	223.963 KB	8	aroC_14,dnaN_162,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	541	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_162	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQISM010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015964 SAMN35438881-rid18359653.denovo.10, whole genome shotgun sequence	52310..52747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQISM010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015964 SAMN35438881-rid18359653.guided.20, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQISM010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Cerro strain 230015964 SAMN35438881-rid18359653.denovo.37, whole genome shotgun sequence	3345..3457																																																						avrA	DAQISM010000011.1	145338..146207	99.425	870	0						
GCA_032904305.1_PDT001776138.1_genomic.fna	Salmonella_enterica	0.5212	489.495 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFFX010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain H22-07648 SAMN35712350-rid18358563.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFFX010000031.1 Salmonella enterica subsp. enterica serovar Enteritidis strain H22-07648 SAMN35712350-rid18358563.guided.18, whole genome shotgun sequence	3164..3601	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFFX010000018.1 Salmonella enterica subsp. enterica serovar Enteritidis strain H22-07648 SAMN35712350-rid18358563.denovo.20, whole genome shotgun sequence	5042..5684	enterobacteriales	IncFII(S)	100	262 / 262	ABOFFX010000022.1 Salmonella enterica subsp. enterica serovar Enteritidis strain H22-07648 SAMN35712350-rid18358563.denovo.25, whole genome shotgun sequence	3267..3528																																																avrA	ABOFFX010000002.1	585348..586217	99.54	870	0						
GCA_032904345.1_PDT001776136.1_genomic.fna	Salmonella_enterica	0.5212	489.907 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFFZ010000001.1 Salmonella enterica strain PNUSAS355045 SAMN35712337-rid18358543.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFFZ010000024.1 Salmonella enterica strain PNUSAS355045 SAMN35712337-rid18358543.guided.21, whole genome shotgun sequence	1077..1514	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFFZ010000012.1 Salmonella enterica strain PNUSAS355045 SAMN35712337-rid18358543.denovo.12, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	ABOFFZ010000016.1 Salmonella enterica strain PNUSAS355045 SAMN35712337-rid18358543.denovo.16, whole genome shotgun sequence	3395..3656																																																avrA	ABOFFZ010000002.1	584148..585017	99.54	870	0						
GCA_032904365.1_PDT001776135.1_genomic.fna	Salmonella_enterica	0.523	493.53 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFGA010000001.1 Salmonella enterica strain PNUSAS355033 SAMN35712340-rid18358533.denovo.01, whole genome shotgun sequence	153902..154339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFGA010000029.1 Salmonella enterica strain PNUSAS355033 SAMN35712340-rid18358533.guided.25, whole genome shotgun sequence	2714..3151	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032904385.1_PDT001776134.1_genomic.fna	Salmonella_enterica	0.5205	205.995 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFGB010000001.1 Salmonella enterica strain PNUSAS355049 SAMN35712341-rid18358523.denovo.01, whole genome shotgun sequence	306678..307115	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOFGB010000064.1 Salmonella enterica strain PNUSAS355049 SAMN35712341-rid18358523.guided.43, whole genome shotgun sequence	4580..5017	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABOFGB010000032.1 Salmonella enterica strain PNUSAS355049 SAMN35712341-rid18358523.denovo.32, whole genome shotgun sequence	12730..13372																																																																	
GCA_032904405.1_PDT001776133.1_genomic.fna	Salmonella_enterica	0.5224	416.146 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFGC010000001.1 Salmonella enterica strain PNUSAS355035 SAMN35712338-rid18358513.denovo.01, whole genome shotgun sequence	573877..574314	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOFGC010000028.1 Salmonella enterica strain PNUSAS355035 SAMN35712338-rid18358513.guided.20, whole genome shotgun sequence	377..814	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFGC010000003.1	39616..40485	99.655	870	0						
GCA_032904425.1_PDT001776131.1_genomic.fna	Salmonella_enterica	0.5217	427.746 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFGD010000001.1 Salmonella enterica strain PNUSAS355034 SAMN35712343-rid18358493.denovo.01, whole genome shotgun sequence	498125..498562	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFGD010000026.1 Salmonella enterica strain PNUSAS355034 SAMN35712343-rid18358493.guided.18, whole genome shotgun sequence	14783..15220	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFGD010000008.1	140447..141316	99.425	870	0						
GCA_032904445.1_PDT001776127.1_genomic.fna	Salmonella_enterica	0.5222	376.718 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFGI010000001.1 Salmonella enterica strain PNUSAS355050 SAMN35712328-rid18358453.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOFGI010000033.1 Salmonella enterica strain PNUSAS355050 SAMN35712328-rid18358453.guided.27, whole genome shotgun sequence	1405..1842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOFGI010000015.1 Salmonella enterica strain PNUSAS355050 SAMN35712328-rid18358453.denovo.15, whole genome shotgun sequence	71576..71717																																																						avrA	ABOFGI010000004.1	39430..40299	99.655	870	0						
GCA_032904465.1_PDT001776129.1_genomic.fna	Salmonella_enterica	0.5223	444.717 KB	3	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	5	aac(6')-Iaa,aadA7,aac(3)-Id,aadA7,aac(3)-Id,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFGG010000001.1 Salmonella enterica strain PNUSAS355046 SAMN35712344-rid18358473.denovo.01, whole genome shotgun sequence	983140..983577	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	ABOFGG010000010.1 Salmonella enterica strain PNUSAS355046 SAMN35712344-rid18358473.denovo.10, whole genome shotgun sequence	56507..57304	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	ABOFGG010000010.1 Salmonella enterica strain PNUSAS355046 SAMN35712344-rid18358473.denovo.10, whole genome shotgun sequence	55955..56431	Gentamicin, Astromicin, Fortimicin	AB114632	aadA7	100	798/798	ABOFGG010000020.1 Salmonella enterica strain PNUSAS355046 SAMN35712344-rid18358473.guided.16, whole genome shotgun sequence	1254..2051	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	ABOFGG010000020.1 Salmonella enterica strain PNUSAS355046 SAMN35712344-rid18358473.guided.16, whole genome shotgun sequence	702..1178	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	ABOFGG010000022.1 Salmonella enterica strain PNUSAS355046 SAMN35712344-rid18358473.guided.19, whole genome shotgun sequence	1843..2280	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABOFGG010000010.1 Salmonella enterica strain PNUSAS355046 SAMN35712344-rid18358473.denovo.10, whole genome shotgun sequence	57809..58648	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFGG010000020.1 Salmonella enterica strain PNUSAS355046 SAMN35712344-rid18358473.guided.16, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOFGG010000010.1 Salmonella enterica strain PNUSAS355046 SAMN35712344-rid18358473.denovo.10, whole genome shotgun sequence	65554..66753	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFGG010000020.1 Salmonella enterica strain PNUSAS355046 SAMN35712344-rid18358473.guided.16, whole genome shotgun sequence	10301..11500	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	ABOFGG010000002.1	144501..145370	99.31	870	0						
GCA_032904485.1_PDT001776132.1_genomic.fna	Salmonella_enterica	0.5207	673.54 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFGE010000001.1 Salmonella enterica strain PNUSAS355054 SAMN35712335-rid18358503.denovo.01, whole genome shotgun sequence	643436..643873	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFGE010000018.1 Salmonella enterica strain PNUSAS355054 SAMN35712335-rid18358503.guided.15, whole genome shotgun sequence	3463..3900	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032904495.1_PDT001776130.1_genomic.fna	Salmonella_enterica	0.5213	696.49 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFGF010000001.1 Salmonella enterica strain PNUSAS355037 SAMN35712345-rid18358483.denovo.01, whole genome shotgun sequence	635197..635634	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFGF010000022.1 Salmonella enterica strain PNUSAS355037 SAMN35712345-rid18358483.guided.15, whole genome shotgun sequence	8877..9314	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032904505.1_PDT001776128.1_genomic.fna	Salmonella_enterica	0.523	469.975 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pMET),IncI1-I(Alpha)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOFGH010000001.1 Salmonella enterica strain PNUSAS355048 SAMN35712331-rid18358463.denovo.01, whole genome shotgun sequence	995380..995817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOFGH010000028.1 Salmonella enterica strain PNUSAS355048 SAMN35712331-rid18358463.guided.20, whole genome shotgun sequence	4997..5434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pMET)	98.27	577 / 577	ABOFGH010000018.1 Salmonella enterica strain PNUSAS355048 SAMN35712331-rid18358463.denovo.18, whole genome shotgun sequence	28348..28924	enterobacteriales	IncI1-I(Alpha)	95.65	138 / 142	ABOFGH010000015.1 Salmonella enterica strain PNUSAS355048 SAMN35712331-rid18358463.denovo.15, whole genome shotgun sequence	70609..70744																																																avrA	ABOFGH010000003.1	140108..140977	99.54	870	0						
GCA_032904545.1_PDT001776125.1_genomic.fna	Salmonella_enterica	0.5214	430.195 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFGK010000001.1 Salmonella enterica strain PNUSAS355047 SAMN35712326-rid18358433.denovo.01, whole genome shotgun sequence	560095..560532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFGK010000030.1 Salmonella enterica strain PNUSAS355047 SAMN35712326-rid18358433.guided.16, whole genome shotgun sequence	3494..3931	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFGK010000012.1	94857..95725	99.195	870	0						
GCA_032904565.1_PDT001776126.1_genomic.fna	Salmonella_enterica	0.5216	222.383 KB	6	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFGJ010000001.1 Salmonella enterica strain PNUSAS355044 SAMN35712327-rid18358443.denovo.01, whole genome shotgun sequence	368587..369024	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOFGJ010000041.1 Salmonella enterica strain PNUSAS355044 SAMN35712327-rid18358443.guided.30, whole genome shotgun sequence	10097..10534	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032904585.1_PDT001776124.1_genomic.fna	Salmonella_enterica	0.5199	223.58 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		2	IncX1,IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFGL010000001.1 Salmonella enterica strain PNUSAS355053 SAMN35712329-rid18358423.denovo.01, whole genome shotgun sequence	582228..582665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFGL010000061.1 Salmonella enterica strain PNUSAS355053 SAMN35712329-rid18358423.guided.49, whole genome shotgun sequence	210..647	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOFGL010000039.1 Salmonella enterica strain PNUSAS355053 SAMN35712329-rid18358423.denovo.39, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFGL010000060.1 Salmonella enterica strain PNUSAS355053 SAMN35712329-rid18358423.guided.46, whole genome shotgun sequence	338..1543	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncX1	98.66	374 / 374	ABOFGL010000032.1 Salmonella enterica strain PNUSAS355053 SAMN35712329-rid18358423.denovo.32, whole genome shotgun sequence	6956..7329	enterobacteriales	IncY	99.74	765 / 765	ABOFGL010000015.1 Salmonella enterica strain PNUSAS355053 SAMN35712329-rid18358423.denovo.15, whole genome shotgun sequence	38912..39676																																																avrA	ABOFGL010000014.1	93865..94734	99.885	870	0						
GCA_032904605.1_PDT001776122.1_genomic.fna	Salmonella_enterica	0.5224	524.972 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOFGN010000001.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.denovo.01, whole genome shotgun sequence	687395..687832	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOFGN010000023.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.denovo.26, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABOFGN010000032.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.guided.25, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOFGN010000036.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.guided.31, whole genome shotgun sequence	1073..1510	Amikacin, Tobramycin	NC_003197	blaCARB-2	100	867/867	ABOFGN010000023.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.denovo.26, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOFGN010000032.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.guided.25, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOFGN010000022.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.denovo.24, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOFGN010000031.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.guided.23, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOFGN010000021.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.denovo.21, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOFGN010000033.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.guided.28, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOFGN010000023.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.denovo.26, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOFGN010000032.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.guided.25, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOFGN010000025.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.denovo.33, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFGN010000037.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.guided.32, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOFGN010000021.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.denovo.21, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOFGN010000034.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.guided.29, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOFGN010000021.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.denovo.21, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOFGN010000034.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.guided.29, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOFGN010000018.1 Salmonella enterica strain PNUSAS355042 SAMN35712334-rid18358403.denovo.18, whole genome shotgun sequence	4434..4684																																																						avrA	ABOFGN010000002.1	553473..554342	99.77	870	0						
GCA_032904625.1_PDT001776120.1_genomic.fna	Salmonella_enterica	0.5213	591.637 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOFGQ010000001.1 Salmonella enterica strain PNUSAS355038 SAMN35712324-rid18358383.denovo.01, whole genome shotgun sequence	398391..398828	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOFGQ010000024.1 Salmonella enterica strain PNUSAS355038 SAMN35712324-rid18358383.guided.17, whole genome shotgun sequence	9261..9698	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.39	446 / 445	ABOFGQ010000011.1 Salmonella enterica strain PNUSAS355038 SAMN35712324-rid18358383.denovo.11, whole genome shotgun sequence	39786..40230	enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABOFGQ010000011.1 Salmonella enterica strain PNUSAS355038 SAMN35712324-rid18358383.denovo.11, whole genome shotgun sequence	40491..40703																																																avrA	ABOFGQ010000003.1	496416..497284	99.425	870	0						
GCA_032904645.1_PDT001776123.1_genomic.fna	Salmonella_enterica	0.5204	491.513 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(p14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOFGM010000001.1 Salmonella enterica strain PNUSAS355052 SAMN35712325-rid18358413.denovo.01, whole genome shotgun sequence	498161..498598	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOFGM010000026.1 Salmonella enterica strain PNUSAS355052 SAMN35712325-rid18358413.guided.18, whole genome shotgun sequence	4995..5432	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOFGM010000013.1 Salmonella enterica strain PNUSAS355052 SAMN35712325-rid18358413.denovo.13, whole genome shotgun sequence	17040..17682	enterobacteriales	IncFII(p14)	92.02	263 / 262	ABOFGM010000013.1 Salmonella enterica strain PNUSAS355052 SAMN35712325-rid18358413.denovo.13, whole genome shotgun sequence	33586..33844																																																avrA	ABOFGM010000003.1	395098..395966	99.425	870	0						
GCA_032904665.1_PDT001776121.1_genomic.fna	Salmonella_enterica	0.5228	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFGO010000001.1 Salmonella enterica strain PNUSAS355043 SAMN35712332-rid18358393.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFGO010000024.1 Salmonella enterica strain PNUSAS355043 SAMN35712332-rid18358393.guided.18, whole genome shotgun sequence	1849..2286	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFGO010000002.1	183135..184004	98.966	870	0						
GCA_032904685.1_PDT001776116.1_genomic.fna	Salmonella_enterica	0.5206	186.754 KB	9	aroC_418,dnaN_14,hemD_224,hisD_499,purE_89,sucA_313,thrA_2	1561	13:i:1,5	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	2	Col(pHAD28),Col440I,Col440I	aroC	100	100	aroC_418	dnaN	100	100	dnaN_14	hemD	100	100	hemD_224	hisD	100	100	hisD_499	purE	100	100	purE_89	sucA	100	100	sucA_313	thrA	100	100	thrA_2	13	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	Idikan		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOFGP010000008.1 Salmonella enterica strain FDA1225481-C001-005 SAMN35712188-rid18358343.denovo.08, whole genome shotgun sequence	152713..153150	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOFGP010000055.1 Salmonella enterica strain FDA1225481-C001-005 SAMN35712188-rid18358343.guided.35, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOFGP010000006.1 Salmonella enterica strain FDA1225481-C001-005 SAMN35712188-rid18358343.denovo.06, whole genome shotgun sequence	184104..184526	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOFGP010000052.1 Salmonella enterica strain FDA1225481-C001-005 SAMN35712188-rid18358343.guided.27, whole genome shotgun sequence	59682..60104	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFGP010000037.1 Salmonella enterica strain FDA1225481-C001-005 SAMN35712188-rid18358343.denovo.41, whole genome shotgun sequence	829..959	enterobacteriales	Col440I	90.27	113 / 114	ABOFGP010000035.1 Salmonella enterica strain FDA1225481-C001-005 SAMN35712188-rid18358343.denovo.39, whole genome shotgun sequence	3345..3457		enterobacteriales	Col440I	94.74	114 / 114	ABOFGP010000036.1 Salmonella enterica strain FDA1225481-C001-005 SAMN35712188-rid18358343.denovo.40, whole genome shotgun sequence	332..445																																																				
GCA_032904705.1_PDT001776104.1_genomic.fna	Salmonella_enterica	0.5194	308.109 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFGR010000001.1 Salmonella enterica strain FDA1225481-C001-001 SAMN35712181-rid18358283.denovo.01, whole genome shotgun sequence	486124..486561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFGR010000032.1 Salmonella enterica strain FDA1225481-C001-001 SAMN35712181-rid18358283.guided.17, whole genome shotgun sequence	20977..21414	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOFGR010000011.1 Salmonella enterica strain FDA1225481-C001-001 SAMN35712181-rid18358283.denovo.11, whole genome shotgun sequence	27818..28240	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOFGR010000034.1 Salmonella enterica strain FDA1225481-C001-001 SAMN35712181-rid18358283.guided.24, whole genome shotgun sequence	16565..16987	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFGR010000002.1	204726..205595	99.195	870	0						
GCA_032904725.1_PDT001776102.1_genomic.fna	Salmonella_enterica	0.5197	403.645 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFGS010000001.1 Salmonella enterica strain FDA1225481-C001-003 SAMN35712091-rid18358263.denovo.01, whole genome shotgun sequence	297958..298395	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFGS010000036.1 Salmonella enterica strain FDA1225481-C001-003 SAMN35712091-rid18358263.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOFGS010000004.1 Salmonella enterica strain FDA1225481-C001-003 SAMN35712091-rid18358263.denovo.04, whole genome shotgun sequence	388761..389183	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOFGS010000034.1 Salmonella enterica strain FDA1225481-C001-003 SAMN35712091-rid18358263.guided.25, whole genome shotgun sequence	16565..16987	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFGS010000002.1	204726..205595	99.195	870	0						
GCA_032905065.1_PDT001774739.1_genomic.fna	Salmonella_enterica	0.5225	60.909 KB	24	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOFHJ010000021.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22313131 SAMN35687753-rid18357023.denovo.021, whole genome shotgun sequence	11369..11806	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFHJ010000086.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22313131 SAMN35687753-rid18357023.denovo.089, whole genome shotgun sequence	5947..6783	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABOFHJ010000086.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22313131 SAMN35687753-rid18357023.denovo.089, whole genome shotgun sequence	4916..5729	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	aph(3'')-Ib	100	804/804	ABOFHJ010000086.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22313131 SAMN35687753-rid18357023.denovo.089, whole genome shotgun sequence	6783..7586	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABOFHJ010000145.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22313131 SAMN35687753-rid18357023.guided.070, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFHJ010000146.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22313131 SAMN35687753-rid18357023.guided.087, whole genome shotgun sequence	7939..8775	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABOFHJ010000146.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22313131 SAMN35687753-rid18357023.guided.087, whole genome shotgun sequence	8993..9806	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	aph(3'')-Ib	100	804/804	ABOFHJ010000146.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22313131 SAMN35687753-rid18357023.guided.087, whole genome shotgun sequence	7136..7939	Streptomycin	AF321551	sul2	99.88	816/816	ABOFHJ010000035.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22313131 SAMN35687753-rid18357023.denovo.035, whole genome shotgun sequence	44598..45413	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABOFHJ010000147.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22313131 SAMN35687753-rid18357023.guided.094, whole genome shotgun sequence	10130..10945	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOFHJ010000110.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22313131 SAMN35687753-rid18357023.denovo.115, whole genome shotgun sequence	2352..3557	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFHJ010000149.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22313131 SAMN35687753-rid18357023.guided.121, whole genome shotgun sequence	2334..3539	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOFHJ010000117.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22313131 SAMN35687753-rid18357023.denovo.123, whole genome shotgun sequence	557..687																																																						avrA	ABOFHJ010000020.1	61555..62423	99.655	869	0						
GCA_032905105.1_PDT001774740.1_genomic.fna	Salmonella_enterica	0.5226	54.607 KB	30	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFHK010000023.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313090 SAMN35687745-rid18356893.denovo.023, whole genome shotgun sequence	12434..12871	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFHK010000185.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313090 SAMN35687745-rid18356893.guided.089, whole genome shotgun sequence	15468..15905	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABOFHK010000013.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313090 SAMN35687745-rid18356893.denovo.013, whole genome shotgun sequence	40567..41382	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOFHK010000186.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313090 SAMN35687745-rid18356893.guided.102, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOFHK010000013.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313090 SAMN35687745-rid18356893.denovo.013, whole genome shotgun sequence	43559..44758	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFHK010000186.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313090 SAMN35687745-rid18356893.guided.102, whole genome shotgun sequence	4544..5743	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOFHK010000132.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313090 SAMN35687745-rid18356893.denovo.136, whole genome shotgun sequence	371..501																																																						avrA	ABOFHK010000010.1	83841..84710	99.885	870	0						
GCA_032905145.1_PDT001774721.1_genomic.fna	Salmonella_enterica	0.5211	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFHN010000001.1 Salmonella enterica strain PNUSAS355014 SAMN35687733-rid18356773.denovo.01, whole genome shotgun sequence	780560..780997	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFHN010000030.1 Salmonella enterica strain PNUSAS355014 SAMN35687733-rid18356773.guided.16, whole genome shotgun sequence	20594..21031	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFHN010000018.1 Salmonella enterica strain PNUSAS355014 SAMN35687733-rid18356773.denovo.21, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOFHN010000014.1 Salmonella enterica strain PNUSAS355014 SAMN35687733-rid18356773.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOFHN010000002.1	553636..554505	99.54	870	0						
GCA_032905185.1_PDT001774720.1_genomic.fna	Salmonella_enterica	0.5222	59.11 KB	28	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX4	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFHL010000017.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.denovo.017, whole genome shotgun sequence	12619..13056	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFHL010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.denovo.067, whole genome shotgun sequence	22685..23476	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFHL010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.denovo.067, whole genome shotgun sequence	22685..23476	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOFHL010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.denovo.131, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOFHL010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.denovo.131, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOFHL010000183.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.guided.034, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFHL010000185.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.guided.096, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFHL010000185.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.guided.096, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOFHL010000188.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.guided.129, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOFHL010000188.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.guided.129, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOFHL010000132.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.denovo.138, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOFHL010000189.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.guided.143, whole genome shotgun sequence	276..1151	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABOFHL010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.denovo.067, whole genome shotgun sequence	21341..22180	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFHL010000185.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.guided.096, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOFHL010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.denovo.067, whole genome shotgun sequence	7625..8824	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFHL010000186.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.guided.110, whole genome shotgun sequence	1910..3109	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOFHL010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.denovo.141, whole genome shotgun sequence	65..538	Trimethoprim	AF393510	dfrA14	100	474/474	ABOFHL010000190.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.guided.148, whole genome shotgun sequence	96..569	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOFHL010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.denovo.119, whole genome shotgun sequence	5327..5886	enterobacteriales	IncX4	98.88	712 / 712	ABOFHL010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313092 SAMN35687746-rid18356763.denovo.137, whole genome shotgun sequence	2444..3155																																																avrA	ABOFHL010000042.1	39536..40405	99.655	870	0						
GCA_032905205.1_PDT001774722.1_genomic.fna	Salmonella_enterica	0.5195	47.382 KB	33	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFHO010000064.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313133 SAMN35687755-rid18356963.denovo.066, whole genome shotgun sequence	11310..11747	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFHO010000111.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313133 SAMN35687755-rid18356963.denovo.113, whole genome shotgun sequence	5839..6675	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOFHO010000111.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313133 SAMN35687755-rid18356963.denovo.113, whole genome shotgun sequence	6675..7477	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOFHO010000111.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313133 SAMN35687755-rid18356963.denovo.113, whole genome shotgun sequence	6675..7478	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOFHO010000111.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313133 SAMN35687755-rid18356963.denovo.113, whole genome shotgun sequence	6675..7478	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOFHO010000111.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313133 SAMN35687755-rid18356963.denovo.113, whole genome shotgun sequence	6675..7478	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABOFHO010000239.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313133 SAMN35687755-rid18356963.guided.065, whole genome shotgun sequence	15552..15989	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFHO010000241.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313133 SAMN35687755-rid18356963.guided.132, whole genome shotgun sequence	3999..4835	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOFHO010000241.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313133 SAMN35687755-rid18356963.guided.132, whole genome shotgun sequence	3197..3999	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOFHO010000241.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313133 SAMN35687755-rid18356963.guided.132, whole genome shotgun sequence	3196..3999	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOFHO010000241.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313133 SAMN35687755-rid18356963.guided.132, whole genome shotgun sequence	3196..3999	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOFHO010000241.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313133 SAMN35687755-rid18356963.guided.132, whole genome shotgun sequence	3196..3999	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOFHO010000094.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313133 SAMN35687755-rid18356963.denovo.096, whole genome shotgun sequence	2692..3018	enterobacteriales	IncHI2A	99.52	630 / 630	ABOFHO010000138.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313133 SAMN35687755-rid18356963.denovo.142, whole genome shotgun sequence	1569..2198		enterobacteriales	IncX1	100	373 / 373	ABOFHO010000185.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313133 SAMN35687755-rid18356963.denovo.189, whole genome shotgun sequence	1150..1522																																									avrA	ABOFHO010000036.1	39484..40353	99.655	870	0						
GCA_032905225.1_PDT001774717.1_genomic.fna	Salmonella_enterica	0.514	210.816 KB	7	aroC_56*,dnaN_38*,hemD_29,hisD_144,purE_237,sucA_1308,thrA_1496	Unknown	-:z4,z23:-	0		1	parC_p.T57S	0		aroC	99.8003992015968	100	aroC_56*	dnaN	99.8003992015968	100	dnaN_38*	hemD	100	100	hemD_29	hisD	100	100	hisD_144	purE	100	100	purE_237	sucA	100	100	sucA_1308	thrA	100	100	thrA_1496	-	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032905245.1_PDT001774718.1_genomic.fna	Salmonella_enterica	0.5214	308.148 KB	5	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFHQ010000001.1 Salmonella enterica strain PNUSAS355006 SAMN35687736-rid18356753.denovo.01, whole genome shotgun sequence	396197..396634	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFHQ010000030.1 Salmonella enterica strain PNUSAS355006 SAMN35687736-rid18356753.guided.21, whole genome shotgun sequence	20566..21003	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032905265.1_PDT001774719.1_genomic.fna	Salmonella_enterica	0.5211	478.5 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFHP010000001.1 Salmonella enterica strain PNUSAS355015 SAMN35687739-rid18356953.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFHP010000035.1 Salmonella enterica strain PNUSAS355015 SAMN35687739-rid18356953.guided.21, whole genome shotgun sequence	13087..13524	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFHP010000020.1 Salmonella enterica strain PNUSAS355015 SAMN35687739-rid18356953.denovo.23, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOFHP010000015.1 Salmonella enterica strain PNUSAS355015 SAMN35687739-rid18356953.denovo.15, whole genome shotgun sequence	4987..5248																																																avrA	ABOFHP010000002.1	585481..586350	99.54	870	0						
GCA_032905285.1_PDT001774716.1_genomic.fna	Salmonella_enterica	0.5217	56.845 KB	31	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncFIA(HI1),IncY	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFHS010000064.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313132 SAMN35687754-rid18356743.denovo.064, whole genome shotgun sequence	12519..12956	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFHS010000179.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313132 SAMN35687754-rid18356743.guided.087, whole genome shotgun sequence	15452..15889	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFHS010000144.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313132 SAMN35687754-rid18356743.denovo.147, whole genome shotgun sequence	1708..1838	enterobacteriales	IncFIA(HI1)	98.97	388 / 388	ABOFHS010000141.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313132 SAMN35687754-rid18356743.denovo.144, whole genome shotgun sequence	355..742		enterobacteriales	IncY	98.95	765 / 765	ABOFHS010000101.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22313132 SAMN35687754-rid18356743.denovo.103, whole genome shotgun sequence	2123..2887																																									avrA	ABOFHS010000026.1	61535..62404	98.966	870	0						
GCA_032905305.1_PDT001774714.1_genomic.fna	Salmonella_enterica	0.5228	77.001 KB	22	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	-:e,h:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	1	IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	-	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOFHU010000004.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.denovo.004, whole genome shotgun sequence	12491..12928	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFHU010000014.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.denovo.014, whole genome shotgun sequence	28247..29083	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFHU010000014.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.denovo.014, whole genome shotgun sequence	27444..28247	Streptomycin	AF321551	aac(6')-Iaa	99.54	438/438	ABOFHU010000132.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.guided.031, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFHU010000134.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.guided.064, whole genome shotgun sequence	22687..23523	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFHU010000134.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.guided.064, whole genome shotgun sequence	21884..22687	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOFHU010000135.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.guided.065, whole genome shotgun sequence	22687..23523	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFHU010000135.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.guided.065, whole genome shotgun sequence	21884..22687	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOFHU010000032.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.denovo.033, whole genome shotgun sequence	49502..50647	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOFHU010000136.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.guided.095, whole genome shotgun sequence	673..1818	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.27	1214/1215	ABOFHU010000014.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.denovo.014, whole genome shotgun sequence	32219..33432	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABOFHU010000138.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.guided.111, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOFHU010000014.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.denovo.014, whole genome shotgun sequence	26568..27383	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOFHU010000134.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.guided.064, whole genome shotgun sequence	21008..21823	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOFHU010000135.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.guided.065, whole genome shotgun sequence	21008..21823	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOFHU010000014.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.denovo.014, whole genome shotgun sequence	30344..31618	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1275/1275	ABOFHU010000134.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.guided.064, whole genome shotgun sequence	24784..26058	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOFHU010000135.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.guided.065, whole genome shotgun sequence	24784..26058	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncC	100	417 / 417	ABOFHU010000014.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313128 SAMN35687748-rid18356723.denovo.014, whole genome shotgun sequence	73411..73827																																																						avrA	ABOFHU010000003.1	94002..94872	99.656	871	0						
GCA_032905325.1_PDT001774715.1_genomic.fna	Salmonella_enterica	0.5227	72.615 KB	22	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFHT010000010.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313134 SAMN35687756-rid18356733.denovo.010, whole genome shotgun sequence	16084..16521	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFHT010000136.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313134 SAMN35687756-rid18356733.guided.080, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFHT010000110.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313134 SAMN35687756-rid18356733.denovo.113, whole genome shotgun sequence	1231..1873	enterobacteriales	IncFII(S)	100	262 / 262	ABOFHT010000093.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313134 SAMN35687756-rid18356733.denovo.096, whole genome shotgun sequence	3360..3621																																																avrA	ABOFHT010000015.1	81622..82491	99.54	870	0						
GCA_032905345.1_PDT001774711.1_genomic.fna	Salmonella_enterica	0.5197	228.407 KB	8	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFHW010000011.1 Salmonella enterica strain PNUSAS355016 SAMN35687738-rid18356703.denovo.11, whole genome shotgun sequence	17250..17687	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFHW010000046.1 Salmonella enterica strain PNUSAS355016 SAMN35687738-rid18356703.guided.27, whole genome shotgun sequence	36799..37236	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOFHW010000003.1 Salmonella enterica strain PNUSAS355016 SAMN35687738-rid18356703.denovo.03, whole genome shotgun sequence	17983..18405	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOFHW010000049.1 Salmonella enterica strain PNUSAS355016 SAMN35687738-rid18356703.guided.39, whole genome shotgun sequence	6405..6827	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFHW010000002.1	173924..174793	99.195	870	0						
GCA_032905365.1_PDT001774710.1_genomic.fna	Salmonella_enterica	0.5213	272.599 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFHV010000001.1 Salmonella enterica strain PNUSAS355010 SAMN35687737-rid18356693.denovo.01, whole genome shotgun sequence	458970..459407	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFHV010000046.1 Salmonella enterica strain PNUSAS355010 SAMN35687737-rid18356693.guided.22, whole genome shotgun sequence	32637..33074	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOFHV010000016.1 Salmonella enterica strain PNUSAS355010 SAMN35687737-rid18356693.denovo.16, whole genome shotgun sequence	68498..69140	enterobacteriales	IncFII(S)	100	262 / 262	ABOFHV010000016.1 Salmonella enterica strain PNUSAS355010 SAMN35687737-rid18356693.denovo.16, whole genome shotgun sequence	84225..84486																																																avrA	ABOFHV010000002.1	209366..210235	99.885	870	0						
GCA_032905385.1_PDT001774709.1_genomic.fna	Salmonella_enterica	0.521	640.409 KB	3	aroC_118,dnaN_107,hemD_8,hisD_51,purE_2,sucA_117,thrA_16	319	7:z29:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_118	dnaN	100	100	dnaN_107	hemD	100	100	hemD_8	hisD	100	100	hisD_51	purE	100	100	purE_2	sucA	100	100	sucA_117	thrA	100	100	thrA_16	7	z29	-	Salmonella enterica subspecies enterica (subspecies I)	Tennessee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFHY010000001.1 Salmonella enterica strain PNUSAS355013 SAMN35687743-rid18356683.denovo.01, whole genome shotgun sequence	482764..483201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFHY010000029.1 Salmonella enterica strain PNUSAS355013 SAMN35687743-rid18356683.guided.22, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFHY010000002.1	144329..145198	99.655	870	0						
GCA_032905405.1_PDT001774708.1_genomic.fna	Salmonella_enterica	0.5204	363.845 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFHX010000006.1 Salmonella enterica strain PNUSAS355011 SAMN35687741-rid18356673.denovo.06, whole genome shotgun sequence	75981..76418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFHX010000039.1 Salmonella enterica strain PNUSAS355011 SAMN35687741-rid18356673.guided.26, whole genome shotgun sequence	4065..4502	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFHX010000013.1	140075..140943	99.195	870	0						
GCA_032905425.1_PDT001774707.1_genomic.fna	Salmonella_enterica	0.5207	409.541 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFHZ010000001.1 Salmonella enterica strain PNUSAS355008 SAMN35687732-rid18356923.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFHZ010000029.1 Salmonella enterica strain PNUSAS355008 SAMN35687732-rid18356923.guided.20, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFHZ010000020.1 Salmonella enterica strain PNUSAS355008 SAMN35687732-rid18356923.denovo.22, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOFHZ010000015.1 Salmonella enterica strain PNUSAS355008 SAMN35687732-rid18356923.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOFHZ010000002.1	585474..586343	99.54	870	0						
GCA_032905445.1_PDT001774706.1_genomic.fna	Salmonella_enterica	0.5212	477.287 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFIA010000001.1 Salmonella enterica strain PNUSAS355005 SAMN35687740-rid18356663.denovo.01, whole genome shotgun sequence	384460..384897	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFIA010000026.1 Salmonella enterica strain PNUSAS355005 SAMN35687740-rid18356663.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	ABOFIA010000019.1 Salmonella enterica strain PNUSAS355005 SAMN35687740-rid18356663.denovo.22, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFIA010000014.1 Salmonella enterica strain PNUSAS355005 SAMN35687740-rid18356663.denovo.15, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABOFIA010000014.1 Salmonella enterica strain PNUSAS355005 SAMN35687740-rid18356663.denovo.15, whole genome shotgun sequence	21856..22117																																									avrA	ABOFIA010000002.1	553426..554295	99.54	870	0						
GCA_032905465.1_PDT001774704.1_genomic.fna	Salmonella_enterica	0.5219	225.63 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	5	aac(6')-Iaa,aph(3')-Ia,aadA12,aadA12,aac(6')-Iaa,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul1,sul1	0		2	IncFIB(AP001918),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFIE010000001.1 Salmonella enterica strain PNUSAS355009 SAMN35687731-rid18356913.denovo.01, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOFIE010000030.1 Salmonella enterica strain PNUSAS355009 SAMN35687731-rid18356913.denovo.30, whole genome shotgun sequence	248..1063	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EU722351	aadA12	100	792/792	ABOFIE010000030.1 Salmonella enterica strain PNUSAS355009 SAMN35687731-rid18356913.denovo.30, whole genome shotgun sequence	12011..12802	Spectinomycin, Streptomycin	AY665771	aadA12	100	792/792	ABOFIE010000053.1 Salmonella enterica strain PNUSAS355009 SAMN35687731-rid18356913.guided.33, whole genome shotgun sequence	6829..7620	Spectinomycin, Streptomycin	AY665771	aac(6')-Iaa	100	438/438	ABOFIE010000055.1 Salmonella enterica strain PNUSAS355009 SAMN35687731-rid18356913.guided.35, whole genome shotgun sequence	13705..14142	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOFIE010000058.1 Salmonella enterica strain PNUSAS355009 SAMN35687731-rid18356913.guided.46, whole genome shotgun sequence	289..1104	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EU722351	blaTEM-1B	100	861/861	ABOFIE010000030.1 Salmonella enterica strain PNUSAS355009 SAMN35687731-rid18356913.denovo.30, whole genome shotgun sequence	23243..24103	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFIE010000057.1 Salmonella enterica strain PNUSAS355009 SAMN35687731-rid18356913.guided.40, whole genome shotgun sequence	3883..4743	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	ABOFIE010000030.1 Salmonella enterica strain PNUSAS355009 SAMN35687731-rid18356913.denovo.30, whole genome shotgun sequence	10667..11506	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFIE010000053.1 Salmonella enterica strain PNUSAS355009 SAMN35687731-rid18356913.guided.33, whole genome shotgun sequence	8125..8964	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOFIE010000036.1 Salmonella enterica strain PNUSAS355009 SAMN35687731-rid18356913.denovo.41, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII(S)	100	262 / 262	ABOFIE010000021.1 Salmonella enterica strain PNUSAS355009 SAMN35687731-rid18356913.denovo.21, whole genome shotgun sequence	5694..5955																																																avrA	ABOFIE010000004.1	173873..174742	99.885	870	0						
GCA_032905485.1_PDT001774705.1_genomic.fna	Salmonella_enterica	0.521	257.839 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFIB010000001.1 Salmonella enterica strain PNUSAS355017 SAMN35687735-rid18356653.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFIB010000049.1 Salmonella enterica strain PNUSAS355017 SAMN35687735-rid18356653.guided.31, whole genome shotgun sequence	2443..2880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOFIB010000025.1 Salmonella enterica strain PNUSAS355017 SAMN35687735-rid18356653.denovo.25, whole genome shotgun sequence	44765..45407	enterobacteriales	IncFII(S)	100	262 / 262	ABOFIB010000025.1 Salmonella enterica strain PNUSAS355017 SAMN35687735-rid18356653.denovo.25, whole genome shotgun sequence	29419..29680																																																avrA	ABOFIB010000004.1	175018..175886	100	869	0						
GCA_032905505.1_PDT001774703.1_genomic.fna	Salmonella_enterica	0.5205	445.83 KB	4	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFID010000002.1 Salmonella enterica strain PNUSAS355007 SAMN35687734-rid18356643.denovo.02, whole genome shotgun sequence	377199..377636	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFID010000027.1 Salmonella enterica strain PNUSAS355007 SAMN35687734-rid18356643.guided.19, whole genome shotgun sequence	10980..11417	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032905525.1_PDT001759324.2_genomic.fna	Salmonella_enterica	0.5217	206.55 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFIC010000001.1 Salmonella enterica strain PNUSAS351360 SAMN35366351-rid18356283.denovo.01, whole genome shotgun sequence	151761..152198	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFIC010000055.1 Salmonella enterica strain PNUSAS351360 SAMN35366351-rid18356283.guided.41, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFIC010000038.1 Salmonella enterica strain PNUSAS351360 SAMN35366351-rid18356283.denovo.38, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOFIC010000040.1 Salmonella enterica strain PNUSAS351360 SAMN35366351-rid18356283.denovo.42, whole genome shotgun sequence	3423..3684																																																avrA	ABOFIC010000008.1	175197..176066	99.54	870	0						
GCA_032906725.1_ASM3290672v1_genomic.fna	Salmonella_enterica	0.5224	252.253 KB	7	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	12	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA16,aac(6')-Ib-cr,floR,qnrB6,ARR-3,sul2,sul1,sul1,sul1,tet(A),dfrA27	1	parC_p.T57S	1	IncFIB(K)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	JALPLQ010000005.1 Salmonella enterica strain 1027 contig5, whole genome shotgun sequence	223306..223743	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	JALPLQ010000036.1 Salmonella enterica strain 1027 contig36, whole genome shotgun sequence	8799..9635	Streptomycin	M28829	aph(3'')-Ib	100	804/804	JALPLQ010000036.1 Salmonella enterica strain 1027 contig36, whole genome shotgun sequence	9635..10438	Streptomycin	AF321551	aadA16	99.65	846/846	JALPLQ010000037.1 Salmonella enterica strain 1027 contig37, whole genome shotgun sequence	6704..7549	Spectinomycin, Streptomycin	EU675686	aac(6')-Ib-cr	100	600/600	JALPLQ010000037.1 Salmonella enterica strain 1027 contig37, whole genome shotgun sequence	8885..9484	Ciprofloxacin, Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin	DQ303918	floR	98.19	1214/1215	JALPLQ010000036.1 Salmonella enterica strain 1027 contig36, whole genome shotgun sequence	4450..5663	Chloramphenicol, Florfenicol	AF118107	qnrB6	100	645/645	JALPLQ010000037.1 Salmonella enterica strain 1027 contig37, whole genome shotgun sequence	1352..1996	Ciprofloxacin	EF523819	ARR-3	100	453/453	JALPLQ010000037.1 Salmonella enterica strain 1027 contig37, whole genome shotgun sequence	8336..8788	Rifampicin	JF806499	sul2	100	816/816	JALPLQ010000036.1 Salmonella enterica strain 1027 contig36, whole genome shotgun sequence	10499..11314	Sulfamethoxazole	AY034138	sul1	100	840/840	JALPLQ010000037.1 Salmonella enterica strain 1027 contig37, whole genome shotgun sequence	5407..6246	Sulfamethoxazole	U12338	sul1	100	709/828	JALPLQ010000037.1 Salmonella enterica strain 1027 contig37, whole genome shotgun sequence	72..780	Sulfamethoxazole	AY522923	sul1	100	709/882	JALPLQ010000037.1 Salmonella enterica strain 1027 contig37, whole genome shotgun sequence	72..780	Sulfamethoxazole	DQ914960	tet(A)	100	1275/1275	JALPLQ010000036.1 Salmonella enterica strain 1027 contig36, whole genome shotgun sequence	6264..7538	Doxycycline, Tetracycline	AF534183	dfrA27	100	474/474	JALPLQ010000037.1 Salmonella enterica strain 1027 contig37, whole genome shotgun sequence	7730..8203	Trimethoprim	FJ459817																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(K)	99.82	560 / 560	JALPLQ010000034.1 Salmonella enterica strain 1027 contig34, whole genome shotgun sequence	6324..6883																																																						avrA	JALPLQ010000012.1	39565..40434	99.425	870	0						
GCA_032906785.1_ASM3290678v1_genomic.fna	Salmonella_enterica	0.5217	223.194 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,tet(A),bleO	1	gyrA_p.S83Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	JALPLP010000007.1 Salmonella enterica strain 1026 contig7, whole genome shotgun sequence	145145..145582	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	831/831	JALPLP010000045.1 Salmonella enterica strain 1026 contig45, whole genome shotgun sequence	2779..3609	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	JALPLP010000045.1 Salmonella enterica strain 1026 contig45, whole genome shotgun sequence	3615..4418	Streptomycin	AF321551	blaTEM-1B	100	861/861	JALPLP010000045.1 Salmonella enterica strain 1026 contig45, whole genome shotgun sequence	1070..1930	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	JALPLP010000039.1 Salmonella enterica strain 1026 contig39, whole genome shotgun sequence	3218..4417	Doxycycline, Tetracycline	AJ517790	bleO	100	392/399	JALPLP010000054.1 Salmonella enterica strain 1026 contig54, whole genome shotgun sequence	1071..1462	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																																																																																																																																														gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	100	643 / 643	JALPLP010000018.1 Salmonella enterica strain 1026 contig18, whole genome shotgun sequence	79899..80541	enterobacteriales	IncFII(S)	100	262 / 262	JALPLP010000018.1 Salmonella enterica strain 1026 contig18, whole genome shotgun sequence	1753..2014																																																avrA	JALPLP010000002.1	172814..173683	99.885	870	0						
GCA_032906805.1_ASM3290680v1_genomic.fna	Salmonella_enterica	0.5225	228.76 KB	8	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	15	aac(6')-Iaa,aadA16,aac(6')-Ib-cr,aac(3)-IId,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,mph(A),floR,qnrB6,ARR-3,sul1,sul1,sul2,tet(A),dfrA27	1	parC_p.T57S	3	Col440I,IncFIB(K),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	JALPLL010000005.1 Salmonella enterica strain 1022 contig5, whole genome shotgun sequence	68445..68882	Amikacin, Tobramycin	NC_003197	aadA16	99.65	846/846	JALPLL010000030.1 Salmonella enterica strain 1022 contig30, whole genome shotgun sequence	12026..12871	Spectinomycin, Streptomycin	EU675686	aac(6')-Ib-cr	100	600/600	JALPLL010000030.1 Salmonella enterica strain 1022 contig30, whole genome shotgun sequence	14207..14806	Ciprofloxacin, Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin	DQ303918	aac(3)-IId	99.88	861/861	JALPLL010000033.1 Salmonella enterica strain 1022 contig33, whole genome shotgun sequence	12184..13044	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(6)-Id	100	837/837	JALPLL010000034.1 Salmonella enterica strain 1022 contig34, whole genome shotgun sequence	8799..9635	Streptomycin	M28829	aph(3'')-Ib	100	804/804	JALPLL010000034.1 Salmonella enterica strain 1022 contig34, whole genome shotgun sequence	9635..10438	Streptomycin	AF321551	blaTEM-1B	99.88	861/861	JALPLL010000033.1 Salmonella enterica strain 1022 contig33, whole genome shotgun sequence	6352..7212	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	JALPLL010000030.1 Salmonella enterica strain 1022 contig30, whole genome shotgun sequence	147..1052	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	JALPLL010000034.1 Salmonella enterica strain 1022 contig34, whole genome shotgun sequence	4450..5663	Chloramphenicol, Florfenicol	AF118107	qnrB6	100	645/645	JALPLL010000030.1 Salmonella enterica strain 1022 contig30, whole genome shotgun sequence	6674..7318	Ciprofloxacin	EF523819	ARR-3	100	453/453	JALPLL010000030.1 Salmonella enterica strain 1022 contig30, whole genome shotgun sequence	13658..14110	Rifampicin	JF806499	sul1	100	840/840	JALPLL010000030.1 Salmonella enterica strain 1022 contig30, whole genome shotgun sequence	10729..11568	Sulfamethoxazole	U12338	sul1	100	840/840	JALPLL010000030.1 Salmonella enterica strain 1022 contig30, whole genome shotgun sequence	5263..6102	Sulfamethoxazole	U12338	sul2	100	816/816	JALPLL010000034.1 Salmonella enterica strain 1022 contig34, whole genome shotgun sequence	10499..11314	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	JALPLL010000034.1 Salmonella enterica strain 1022 contig34, whole genome shotgun sequence	6264..7538	Doxycycline, Tetracycline	AF534183	dfrA27	100	474/474	JALPLL010000030.1 Salmonella enterica strain 1022 contig30, whole genome shotgun sequence	13052..13525	Trimethoprim	FJ459817																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.81	113 / 114	JALPLL010000037.1 Salmonella enterica strain 1022 contig37, whole genome shotgun sequence	3305..3416	enterobacteriales	IncFIB(K)	99.82	560 / 560	JALPLL010000035.1 Salmonella enterica strain 1022 contig35, whole genome shotgun sequence	601..1160		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	JALPLL010000021.1 Salmonella enterica strain 1022 contig21, whole genome shotgun sequence	58847..58988																																									avrA	JALPLL010000016.1	39564..40433	99.425	870	0						
GCA_032906825.1_ASM3290682v1_genomic.fna	Salmonella_enterica	0.5214	428.274 KB	5	aroC_92,dnaN_125,hemD_78,hisD_128,purE_138,sucA_9,thrA_141	463	3,10:e,h:l,w	9	aac(6')-Iaa,aph(3')-Ia,blaTEM-1A,fosA7,floR,qnrS1,OqxB,OqxA,tet(A)	1	parC_p.T57S	2	IncFIA(HI1),IncFIB(K)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_125	hemD	100	100	hemD_78	hisD	100	100	hisD_128	purE	100	100	purE_138	sucA	100	100	sucA_9	thrA	100	100	thrA_141	3,10	e,h	l,w	Salmonella enterica subspecies enterica (subspecies I)	Meleagridis		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	JALPLN010000001.1 Salmonella enterica strain 1024 contig1, whole genome shotgun sequence	152894..153331	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	JALPLN010000042.1 Salmonella enterica strain 1024 contig42, whole genome shotgun sequence	215..1030	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	blaTEM-1A	100	861/861	JALPLN010000029.1 Salmonella enterica strain 1024 contig29, whole genome shotgun sequence	5590..6450	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	fosA7	96.45	423/423	JALPLN010000008.1 Salmonella enterica strain 1024 contig8, whole genome shotgun sequence	159814..160236	Fosfomycin	LAPJ01000014	floR	98.19	1214/1215	JALPLN010000030.1 Salmonella enterica strain 1024 contig30, whole genome shotgun sequence	706..1919	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	JALPLN010000029.1 Salmonella enterica strain 1024 contig29, whole genome shotgun sequence	3945..4601	Ciprofloxacin	AB187515	OqxB	100	3153/3153	JALPLN010000033.1 Salmonella enterica strain 1024 contig33, whole genome shotgun sequence	676..3828	Chloramphenicol, Nalidixic acid, Ciprofloxacin, Trimethoprim	EU370913	OqxA	100	1176/1176	JALPLN010000033.1 Salmonella enterica strain 1024 contig33, whole genome shotgun sequence	3852..5027	Chloramphenicol, Nalidixic acid, Ciprofloxacin, Trimethoprim	EU370913	tet(A)	100	1247/1275	JALPLN010000036.1 Salmonella enterica strain 1024 contig36, whole genome shotgun sequence	713..1959	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																									parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIA(HI1)	98.71	388 / 388	JALPLN010000027.1 Salmonella enterica strain 1024 contig27, whole genome shotgun sequence	7988..8375	enterobacteriales	IncFIB(K)	98.93	560 / 560	JALPLN010000027.1 Salmonella enterica strain 1024 contig27, whole genome shotgun sequence	3373..3932																																																avrA	JALPLN010000003.1	39566..40435	98.851	870	0						
GCA_032906835.1_ASM3290683v1_genomic.fna	Salmonella_enterica	0.5217	73.84 KB	18	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,ARR-3,sul2,sul1,tet(B),dfrA27	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	JALPLM010000029.1 Salmonella enterica strain 1023 contig29, whole genome shotgun sequence	29626..30063	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	837/837	JALPLM010000112.1 Salmonella enterica strain 1023 contig112, whole genome shotgun sequence	86..922	Streptomycin	M28829	aph(3'')-Ib	100	804/804	JALPLM010000112.1 Salmonella enterica strain 1023 contig112, whole genome shotgun sequence	922..1725	Streptomycin	AF321551	blaTEM-1B	100	861/861	JALPLM010000124.1 Salmonella enterica strain 1023 contig124, whole genome shotgun sequence	599..1459	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	ARR-3	100	453/453	JALPLM010000140.1 Salmonella enterica strain 1023 contig140, whole genome shotgun sequence	199..651	Rifampicin	JF806499	sul2	100	816/816	JALPLM010000112.1 Salmonella enterica strain 1023 contig112, whole genome shotgun sequence	1786..2601	Sulfamethoxazole	HQ840942	sul1	99.76	840/840	JALPLM010000117.1 Salmonella enterica strain 1023 contig117, whole genome shotgun sequence	1027..1864	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	JALPLM010000100.1 Salmonella enterica strain 1023 contig100, whole genome shotgun sequence	502..1707	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA27	100	429/474	JALPLM010000140.1 Salmonella enterica strain 1023 contig140, whole genome shotgun sequence	757..1185	Trimethoprim	FJ459817																																																																																																																																																																																																																																																																																																																																																																																																																																																																																								avrA	JALPLM010000005.1	29185..30054	99.885	870	0						
GCA_032906865.1_ASM3290686v1_genomic.fna	Salmonella_enterica	0.5216	226.572 KB	8	aroC_5,dnaN_110,hemD_35,hisD_122,purE_2,sucA_19,thrA_22	358	8:r:l,w	2	aac(6')-Iaa,sul1	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_5	dnaN	100	100	dnaN_110	hemD	100	100	hemD_35	hisD	100	100	hisD_122	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_22	8	r	l,w	Salmonella enterica subspecies enterica (subspecies I)	Goldcoast or Brikama	The predicted serotypes share the same general formula: 8:r:l,w and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	JALPLK010000003.1 Salmonella enterica strain 1021 contig3, whole genome shotgun sequence	140766..141203	Amikacin, Tobramycin	NC_003197	sul1	100	828/840	JALPLK010000058.1 Salmonella enterica strain 1021 contig58, whole genome shotgun sequence	1..828	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.55	110 / 114	JALPLK010000033.1 Salmonella enterica strain 1021 contig33, whole genome shotgun sequence	2903..3012																																																						avrA	JALPLK010000009.1	39352..40221	98.851	870	0						
GCA_032906885.1_ASM3290688v1_genomic.fna	Salmonella_enterica	0.5221	251.504 KB	7	aroC_5,dnaN_110,hemD_35,hisD_122,purE_2,sucA_19,thrA_22	358	8:r:l,w	1	aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_5	dnaN	100	100	dnaN_110	hemD	100	100	hemD_35	hisD	100	100	hisD_122	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_22	8	r	l,w	Salmonella enterica subspecies enterica (subspecies I)	Goldcoast or Brikama	The predicted serotypes share the same general formula: 8:r:l,w and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	JALPLJ010000003.1 Salmonella enterica strain 1020 contig3, whole genome shotgun sequence	140766..141203	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.55	110 / 114	JALPLJ010000030.1 Salmonella enterica strain 1020 contig30, whole genome shotgun sequence	2843..2952																																																						avrA	JALPLJ010000011.1	39566..40435	98.851	870	0						
GCA_032906905.1_ASM3290690v1_genomic.fna	Salmonella_enterica	0.5185	223.581 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:1,2	13	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Ib-cr,aph(6)-Id,aph(3'')-Ib,blaOXA-1,blaTEM-1B,catB3,ARR-3,sul1,sul2,sul2,sul2,tet(B)	0		4	IncFIB(S),IncFII(S),IncHI2,IncHI2A	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	JALPLO010000004.1 Salmonella enterica strain 1025 contig4, whole genome shotgun sequence	133252..133689	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	JALPLO010000057.1 Salmonella enterica strain 1025 contig57, whole genome shotgun sequence	1133..2158	Hygromycin	V01499	aac(3)-IV	99.87	777/777	JALPLO010000057.1 Salmonella enterica strain 1025 contig57, whole genome shotgun sequence	128..904	Gentamicin, Tobramycin	DQ241380	aac(6')-Ib-cr	100	600/600	JALPLO010000063.1 Salmonella enterica strain 1025 contig63, whole genome shotgun sequence	124..723	Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin, Ciprofloxacin	DQ303918	aph(6)-Id	100	837/837	JALPLO010000083.1 Salmonella enterica strain 1025 contig83, whole genome shotgun sequence	86..922	Streptomycin	M28829	aph(3'')-Ib	100	804/804	JALPLO010000083.1 Salmonella enterica strain 1025 contig83, whole genome shotgun sequence	922..1725	Streptomycin	AF321551	blaOXA-1	100	831/831	JALPLO010000063.1 Salmonella enterica strain 1025 contig63, whole genome shotgun sequence	854..1684	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Piperacillin, Piperacillin+Tazobactam	HQ170510	blaTEM-1B	100	861/861	JALPLO010000082.1 Salmonella enterica strain 1025 contig82, whole genome shotgun sequence	598..1458	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catB3	100	633/633	JALPLO010000063.1 Salmonella enterica strain 1025 contig63, whole genome shotgun sequence	1822..2454	Chloramphenicol	U13880	ARR-3	100	453/453	JALPLO010000063.1 Salmonella enterica strain 1025 contig63, whole genome shotgun sequence	2539..2991	Rifampicin	JF806499	sul1	100	840/840	JALPLO010000063.1 Salmonella enterica strain 1025 contig63, whole genome shotgun sequence	3555..4394	Sulfamethoxazole	U12338	sul2	100	791/816	JALPLO010000117.1 Salmonella enterica strain 1025 contig117, whole genome shotgun sequence	19..809	Sulfamethoxazole	AB366440	sul2	100	791/816	JALPLO010000117.1 Salmonella enterica strain 1025 contig117, whole genome shotgun sequence	19..809	Sulfamethoxazole	FN995456	sul2	100	791/816	JALPLO010000117.1 Salmonella enterica strain 1025 contig117, whole genome shotgun sequence	19..809	Sulfamethoxazole	HQ840942	tet(B)	99.92	1206/1206	JALPLO010000043.1 Salmonella enterica strain 1025 contig43, whole genome shotgun sequence	10581..11786	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																			enterobacteriales	IncFIB(S)	100	643 / 643	JALPLO010000023.1 Salmonella enterica strain 1025 contig23, whole genome shotgun sequence	11258..11900	enterobacteriales	IncFII(S)	100	262 / 262	JALPLO010000044.1 Salmonella enterica strain 1025 contig44, whole genome shotgun sequence	1830..2091		enterobacteriales	IncHI2	100	327 / 327	JALPLO010000014.1 Salmonella enterica strain 1025 contig14, whole genome shotgun sequence	125646..125972		enterobacteriales	IncHI2A	99.52	630 / 630	JALPLO010000014.1 Salmonella enterica strain 1025 contig14, whole genome shotgun sequence	108856..109485																																		avrA	JALPLO010000001.1	587851..588720	99.885	870	0						
GCA_032906925.1_ASM3290692v1_genomic.fna	Salmonella_enterica	0.5191	534.429 KB	4	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	3	aac(6')-Iaa,floR,qnrS1	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncQ1	aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	JALPLH010000001.1 Salmonella enterica strain 1018 contig1, whole genome shotgun sequence	164272..164709	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	JALPLH010000024.1 Salmonella enterica strain 1018 contig25, whole genome shotgun sequence	599..1812	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	JALPLH010000023.1 Salmonella enterica strain 1018 contig24, whole genome shotgun sequence	7311..7967	Ciprofloxacin	AB187515																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	JALPLH010000026.1 Salmonella enterica strain 1018 contig27, whole genome shotgun sequence	3960..4090	enterobacteriales	Col(pHAD28)	92.37	131 / 131	JALPLH010000027.1 Salmonella enterica strain 1018 contig28, whole genome shotgun sequence	120..250		enterobacteriales	IncQ1	91.98	761 / 796	JALPLH010000024.1 Salmonella enterica strain 1018 contig25, whole genome shotgun sequence	3681..4439																																									avrA	JALPLH010000003.1	39559..40428	99.425	870	0						
GCA_032906945.1_ASM3290694v1_genomic.fna	Salmonella_enterica	0.5219	276.266 KB	7	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	15	aac(6')-Iaa,aadA16,aac(6')-Ib-cr,aac(3)-IId,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,mph(A),floR,qnrB6,ARR-3,sul1,sul1,sul2,tet(A),dfrA27	1	parC_p.T57S	1	IncFIB(K)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	JALPLI010000007.1 Salmonella enterica strain 1019 contig7, whole genome shotgun sequence	68444..68881	Amikacin, Tobramycin	NC_003197	aadA16	99.65	846/846	JALPLI010000028.1 Salmonella enterica strain 1019 contig28, whole genome shotgun sequence	12026..12871	Spectinomycin, Streptomycin	EU675686	aac(6')-Ib-cr	100	600/600	JALPLI010000028.1 Salmonella enterica strain 1019 contig28, whole genome shotgun sequence	14207..14806	Ciprofloxacin, Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin	DQ303918	aac(3)-IId	99.88	861/861	JALPLI010000031.1 Salmonella enterica strain 1019 contig31, whole genome shotgun sequence	247..1107	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(6)-Id	100	837/837	JALPLI010000032.1 Salmonella enterica strain 1019 contig32, whole genome shotgun sequence	8799..9635	Streptomycin	M28829	aph(3'')-Ib	100	804/804	JALPLI010000032.1 Salmonella enterica strain 1019 contig32, whole genome shotgun sequence	9635..10438	Streptomycin	AF321551	blaTEM-1B	99.88	861/861	JALPLI010000031.1 Salmonella enterica strain 1019 contig31, whole genome shotgun sequence	6079..6939	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	JALPLI010000028.1 Salmonella enterica strain 1019 contig28, whole genome shotgun sequence	147..1052	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	JALPLI010000032.1 Salmonella enterica strain 1019 contig32, whole genome shotgun sequence	4450..5663	Chloramphenicol, Florfenicol	AF118107	qnrB6	100	645/645	JALPLI010000028.1 Salmonella enterica strain 1019 contig28, whole genome shotgun sequence	6674..7318	Ciprofloxacin	EF523819	ARR-3	100	453/453	JALPLI010000028.1 Salmonella enterica strain 1019 contig28, whole genome shotgun sequence	13658..14110	Rifampicin	JF806499	sul1	100	840/840	JALPLI010000028.1 Salmonella enterica strain 1019 contig28, whole genome shotgun sequence	10729..11568	Sulfamethoxazole	U12338	sul1	100	840/840	JALPLI010000028.1 Salmonella enterica strain 1019 contig28, whole genome shotgun sequence	5263..6102	Sulfamethoxazole	U12338	sul2	100	816/816	JALPLI010000032.1 Salmonella enterica strain 1019 contig32, whole genome shotgun sequence	10499..11314	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	JALPLI010000032.1 Salmonella enterica strain 1019 contig32, whole genome shotgun sequence	6264..7538	Doxycycline, Tetracycline	AF534183	dfrA27	100	474/474	JALPLI010000028.1 Salmonella enterica strain 1019 contig28, whole genome shotgun sequence	13052..13525	Trimethoprim	FJ459817																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(K)	99.82	560 / 560	JALPLI010000033.1 Salmonella enterica strain 1019 contig33, whole genome shotgun sequence	6877..7436																																																						avrA	JALPLI010000015.1	37039..37908	99.425	870	0						
GCA_032906965.1_ASM3290696v1_genomic.fna	Salmonella_enterica	0.5216	196.368 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,tet(A),bleO	1	gyrA_p.S83Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	JALPLG010000005.1 Salmonella enterica strain 1016 contig5, whole genome shotgun sequence	133254..133691	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	831/831	JALPLG010000045.1 Salmonella enterica strain 1016 contig45, whole genome shotgun sequence	2657..3487	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	JALPLG010000045.1 Salmonella enterica strain 1016 contig45, whole genome shotgun sequence	1848..2651	Streptomycin	AF321551	blaTEM-1B	100	861/861	JALPLG010000045.1 Salmonella enterica strain 1016 contig45, whole genome shotgun sequence	4336..5196	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	JALPLG010000039.1 Salmonella enterica strain 1016 contig39, whole genome shotgun sequence	3218..4417	Doxycycline, Tetracycline	AJ517790	bleO	100	392/399	JALPLG010000053.1 Salmonella enterica strain 1016 contig53, whole genome shotgun sequence	211..602	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																																																																																																																																														gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	100	643 / 643	JALPLG010000020.1 Salmonella enterica strain 1016 contig20, whole genome shotgun sequence	79881..80523	enterobacteriales	IncFII(S)	100	262 / 262	JALPLG010000020.1 Salmonella enterica strain 1016 contig20, whole genome shotgun sequence	1753..2014																																																avrA	JALPLG010000002.1	39565..40434	99.885	870	0						
GCA_032906985.1_ASM3290698v1_genomic.fna	Salmonella_enterica	0.5222	399.791 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	JALPLF010000002.1 Salmonella enterica strain 1014 contig2, whole genome shotgun sequence	529108..529545	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032907005.1_ASM3290700v1_genomic.fna	Salmonella_enterica	0.5222	400.394 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	JALPLE010000002.1 Salmonella enterica strain 1013 contig2, whole genome shotgun sequence	556581..557018	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032907025.1_ASM3290702v1_genomic.fna	Salmonella_enterica	0.5222	400.394 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	JALPLD010000002.1 Salmonella enterica strain 1011 contig2, whole genome shotgun sequence	556581..557018	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032907045.1_ASM3290704v1_genomic.fna	Salmonella_enterica	0.5222	399.791 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	JALPLB010000002.1 Salmonella enterica strain 1009 contig2, whole genome shotgun sequence	528829..529266	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032907065.1_ASM3290706v1_genomic.fna	Salmonella_enterica	0.5222	400.394 KB	4	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	JALPLC010000002.1 Salmonella enterica strain 1010 contig2, whole genome shotgun sequence	529425..529862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032907085.1_ASM3290708v1_genomic.fna	Salmonella_enterica	0.5216	222.696 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,tet(A),bleO	1	gyrA_p.S83Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	JALPLA010000006.1 Salmonella enterica strain 1008 contig6, whole genome shotgun sequence	133254..133691	Amikacin, Tobramycin	NC_003197	aph(6)-Id	99.88	831/831	JALPLA010000043.1 Salmonella enterica strain 1008 contig43, whole genome shotgun sequence	2657..3487	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	JALPLA010000043.1 Salmonella enterica strain 1008 contig43, whole genome shotgun sequence	1848..2651	Streptomycin	AF321551	blaTEM-1B	100	861/861	JALPLA010000043.1 Salmonella enterica strain 1008 contig43, whole genome shotgun sequence	4336..5196	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	JALPLA010000037.1 Salmonella enterica strain 1008 contig37, whole genome shotgun sequence	12183..13382	Doxycycline, Tetracycline	AJ517790	bleO	100	392/399	JALPLA010000052.1 Salmonella enterica strain 1008 contig52, whole genome shotgun sequence	211..602	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																																																																																																																																														gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	100	643 / 643	JALPLA010000019.1 Salmonella enterica strain 1008 contig19, whole genome shotgun sequence	11181..11823	enterobacteriales	IncFII(S)	100	262 / 262	JALPLA010000019.1 Salmonella enterica strain 1008 contig19, whole genome shotgun sequence	89696..89957																																																avrA	JALPLA010000001.1	451929..452798	99.885	870	0						
GCA_032907105.1_ASM3290710v1_genomic.fna	Salmonella_enterica	0.5213	186.897 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,floR,sul1,tet(A),dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	JALPKZ010000001.1 Salmonella enterica strain 1007 contig1, whole genome shotgun sequence	574044..574481	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	JALPKZ010000019.1 Salmonella enterica strain 1007 contig19, whole genome shotgun sequence	1295..2086	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	JALPKZ010000019.1 Salmonella enterica strain 1007 contig19, whole genome shotgun sequence	1295..2086	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	JALPKZ010000036.1 Salmonella enterica strain 1007 contig36, whole genome shotgun sequence	1132..2157	Hygromycin	V01499	aac(3)-IV	100	777/777	JALPKZ010000036.1 Salmonella enterica strain 1007 contig36, whole genome shotgun sequence	127..903	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	JALPKZ010000046.1 Salmonella enterica strain 1007 contig46, whole genome shotgun sequence	373..1248	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	JALPKZ010000036.1 Salmonella enterica strain 1007 contig36, whole genome shotgun sequence	8756..9969	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	JALPKZ010000019.1 Salmonella enterica strain 1007 contig19, whole genome shotgun sequence	2591..3430	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	JALPKZ010000019.1 Salmonella enterica strain 1007 contig19, whole genome shotgun sequence	15947..17146	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	JALPKZ010000039.1 Salmonella enterica strain 1007 contig39, whole genome shotgun sequence	3810..4283	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	JALPKZ010000031.1 Salmonella enterica strain 1007 contig31, whole genome shotgun sequence	14737..15296																																																						avrA	JALPKZ010000002.1	375617..376486	99.655	870	0						
GCA_032907125.1_ASM3290712v1_genomic.fna	Salmonella_enterica	0.5219	354.097 KB	6	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	21	aac(6')-Iaa,aadA7,aac(3)-IId,aadA17,aph(3')-Ia,rmtB,blaCTX-M-55,blaTEM-214,blaTEM-209,blaTEM-206,blaTEM-141,blaTEM-1B,fosA3,mph(A),lnu(F),floR,qnrS1,ARR-2,sul1,tet(A),dfrA14	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	2	Col(pHAD28),Col440I	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	JALPKX010000007.1 Salmonella enterica strain 1005 contig7, whole genome shotgun sequence	78613..79050	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	JALPKX010000023.1 Salmonella enterica strain 1005 contig23, whole genome shotgun sequence	12065..12862	Spectinomycin, Streptomycin	AF224733	aac(3)-IId	99.88	861/861	JALPKX010000041.1 Salmonella enterica strain 1005 contig41, whole genome shotgun sequence	893..1753	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA17	98.86	792/792	JALPKX010000044.1 Salmonella enterica strain 1005 contig44, whole genome shotgun sequence	1119..1910	Spectinomycin, Streptomycin	FJ460181	aph(3')-Ia	99.88	816/816	JALPKX010000049.1 Salmonella enterica strain 1005 contig49, whole genome shotgun sequence	199..1014	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	EF015636	rmtB	100	756/756	JALPKX010000052.1 Salmonella enterica strain 1005 contig52, whole genome shotgun sequence	224..979	Amikacin, Gentamicin, Tobramycin, Kanamycin, Arbekacin, Sisomicin, Isepamicin	AB103506	blaCTX-M-55	100	876/876	JALPKX010000045.1 Salmonella enterica strain 1005 contig45, whole genome shotgun sequence	205..1080	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-214	100	741/861	JALPKX010000056.1 Salmonella enterica strain 1005 contig56, whole genome shotgun sequence	1..741	Unknown Beta-lactam	KP050491	blaTEM-209	100	741/861	JALPKX010000056.1 Salmonella enterica strain 1005 contig56, whole genome shotgun sequence	1..741	Unknown Beta-lactam	KF240808	blaTEM-206	100	741/861	JALPKX010000056.1 Salmonella enterica strain 1005 contig56, whole genome shotgun sequence	1..741	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-141	100	741/861	JALPKX010000056.1 Salmonella enterica strain 1005 contig56, whole genome shotgun sequence	1..741	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY956335	blaTEM-1B	100	741/861	JALPKX010000056.1 Salmonella enterica strain 1005 contig56, whole genome shotgun sequence	1..741	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	fosA3	100	417/417	JALPKX010000037.1 Salmonella enterica strain 1005 contig37, whole genome shotgun sequence	1834..2250	Fosfomycin	AB522970	mph(A)	100	906/906	JALPKX010000034.1 Salmonella enterica strain 1005 contig34, whole genome shotgun sequence	146..1051	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	JALPKX010000044.1 Salmonella enterica strain 1005 contig44, whole genome shotgun sequence	166..987	Lincomycin	EU118119	floR	98.11	1214/1215	JALPKX010000028.1 Salmonella enterica strain 1005 contig28, whole genome shotgun sequence	706..1919	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	JALPKX010000027.1 Salmonella enterica strain 1005 contig27, whole genome shotgun sequence	2832..3488	Ciprofloxacin	AB187515	ARR-2	100	453/453	JALPKX010000046.1 Salmonella enterica strain 1005 contig46, whole genome shotgun sequence	690..1142	Rifampicin	HQ141279	sul1	100	840/840	JALPKX010000023.1 Salmonella enterica strain 1005 contig23, whole genome shotgun sequence	10721..11560	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	JALPKX010000023.1 Salmonella enterica strain 1005 contig23, whole genome shotgun sequence	2463..3662	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	JALPKX010000046.1 Salmonella enterica strain 1005 contig46, whole genome shotgun sequence	1253..1726	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																					gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	Col(pHAD28)	92.37	131 / 131	JALPKX010000042.1 Salmonella enterica strain 1005 contig42, whole genome shotgun sequence	25..155	enterobacteriales	Col440I	94.55	110 / 114	JALPKX010000032.1 Salmonella enterica strain 1005 contig32, whole genome shotgun sequence	2444..2553																																																avrA	JALPKX010000002.1	39566..40435	99.31	870	0						
GCA_032907145.1_ASM3290714v1_genomic.fna	Salmonella_enterica	0.52	302.101 KB	6	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),Col440I,Col440I,Col440I,Col440II,IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	JALPKW010000009.1 Salmonella enterica strain 1004 contig9, whole genome shotgun sequence	223250..223687	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.25	129 / 131	JALPKW010000032.1 Salmonella enterica strain 1004 contig32, whole genome shotgun sequence	1..129	enterobacteriales	Col(pHAD28)	91.6	131 / 131	JALPKW010000037.1 Salmonella enterica strain 1004 contig37, whole genome shotgun sequence	1..131		enterobacteriales	Col440I	94.55	110 / 114	JALPKW010000035.1 Salmonella enterica strain 1004 contig35, whole genome shotgun sequence	4034..4143		enterobacteriales	Col440I	94.74	114 / 114	JALPKW010000036.1 Salmonella enterica strain 1004 contig36, whole genome shotgun sequence	41..154		enterobacteriales	Col440I	93.81	113 / 114	JALPKW010000040.1 Salmonella enterica strain 1004 contig41, whole genome shotgun sequence	2959..3070		enterobacteriales	Col440II	98.23	282 / 282	JALPKW010000032.1 Salmonella enterica strain 1004 contig32, whole genome shotgun sequence	4572..4853		enterobacteriales	IncFII(p96A)	97	534 / 534	JALPKW010000023.1 Salmonella enterica strain 1004 contig23, whole genome shotgun sequence	50660..51193													avrA	JALPKW010000001.1	498435..499304	99.54	870	0						
GCA_032907165.1_ASM3290716v1_genomic.fna	Salmonella_enterica	0.5204	281.846 KB	6	aroC_13,dnaN_12,hemD_63,hisD_1702,purE_13,sucA_16,thrA_4	9074	9:l,z28:1,5	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_63	hisD	100	100	hisD_1702	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	JALPKY010000005.1 Salmonella enterica strain 1006 contig5, whole genome shotgun sequence	149498..149935	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	JALPKY010000003.1	39427..40296	99.54	870	0						
GCA_032907185.1_ASM3290718v1_genomic.fna	Salmonella_enterica	0.5215	258.689 KB	7	aroC_10,dnaN_7,hemD_12,hisD_230,purE_5,sucA_9,thrA_2	1544	4:i:1,2	1	aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_230	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	JALPKV010000005.1 Salmonella enterica strain 1003 contig5, whole genome shotgun sequence	133223..133660	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(S)	100	643 / 643	JALPKV010000019.1 Salmonella enterica strain 1003 contig19, whole genome shotgun sequence	79869..80511	enterobacteriales	IncFII(S)	100	262 / 262	JALPKV010000019.1 Salmonella enterica strain 1003 contig19, whole genome shotgun sequence	1753..2014																																																avrA	JALPKV010000001.1	451652..452521	99.885	870	0						
GCA_032907205.1_ASM3290720v1_genomic.fna	Salmonella_enterica	0.519	201.941 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	8	aac(6')-Iaa,blaCTX-M-65,floR,OqxB,OqxA,qnrS2,sul1,bleO	0		4	IncFIB(S),IncFII(S),IncHI2,IncHI2A	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	JALPKU010000004.1 Salmonella enterica strain 1002 contig4, whole genome shotgun sequence	145481..145918	Amikacin, Tobramycin	NC_003197	blaCTX-M-65	100	876/876	JALPKU010000053.1 Salmonella enterica strain 1002 contig53, whole genome shotgun sequence	2691..3566	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	JALPKU010000050.1 Salmonella enterica strain 1002 contig50, whole genome shotgun sequence	5105..6318	Chloramphenicol, Florfenicol	AF118107	OqxB	99.97	3153/3153	JALPKU010000054.1 Salmonella enterica strain 1002 contig54, whole genome shotgun sequence	112..3264	Chloramphenicol, Nalidixic acid, Ciprofloxacin, Trimethoprim	EU370913	OqxA	99.83	1176/1176	JALPKU010000054.1 Salmonella enterica strain 1002 contig54, whole genome shotgun sequence	3288..4463	Chloramphenicol, Nalidixic acid, Ciprofloxacin, Trimethoprim	EU370913	qnrS2	100	657/657	JALPKU010000065.1 Salmonella enterica strain 1002 contig65, whole genome shotgun sequence	308..964	Ciprofloxacin	DQ485530	sul1	99.88	840/840	JALPKU010000059.1 Salmonella enterica strain 1002 contig59, whole genome shotgun sequence	1750..2589	Sulfamethoxazole	U12338	bleO	100	392/399	JALPKU010000068.1 Salmonella enterica strain 1002 contig68, whole genome shotgun sequence	213..604	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	IncFIB(S)	100	643 / 643	JALPKU010000036.1 Salmonella enterica strain 1002 contig36, whole genome shotgun sequence	9844..10486	enterobacteriales	IncFII(S)	100	262 / 262	JALPKU010000043.1 Salmonella enterica strain 1002 contig43, whole genome shotgun sequence	5398..5659		enterobacteriales	IncHI2	100	327 / 327	JALPKU010000018.1 Salmonella enterica strain 1002 contig18, whole genome shotgun sequence	18714..19040		enterobacteriales	IncHI2A	99.52	630 / 630	JALPKU010000018.1 Salmonella enterica strain 1002 contig18, whole genome shotgun sequence	35244..35873																																		avrA	JALPKU010000001.1	39411..40280	99.885	870	0						
GCA_032907225.1_ASM3290722v1_genomic.fna	Salmonella_enterica	0.5229	225.411 KB	8	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	16	aac(6')-Iaa,aadA16,aac(6')-Ib-cr,aac(3)-IId,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,mph(A),floR,catA2,qnrB6,ARR-3,sul1,sul1,sul2,tet(A),dfrA27	1	parC_p.T57S	1	IncFIB(K)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	JALPKT010000006.1 Salmonella enterica strain 1001 contig6, whole genome shotgun sequence	68444..68881	Amikacin, Tobramycin	NC_003197	aadA16	99.65	846/846	JALPKT010000029.1 Salmonella enterica strain 1001 contig29, whole genome shotgun sequence	12026..12871	Spectinomycin, Streptomycin	EU675686	aac(6')-Ib-cr	100	600/600	JALPKT010000029.1 Salmonella enterica strain 1001 contig29, whole genome shotgun sequence	14207..14806	Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin, Fluoroquinolone, Ciprofloxacin, Ciprofloxacin	DQ303918	aac(3)-IId	99.88	861/861	JALPKT010000032.1 Salmonella enterica strain 1001 contig32, whole genome shotgun sequence	247..1107	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(6)-Id	100	837/837	JALPKT010000033.1 Salmonella enterica strain 1001 contig33, whole genome shotgun sequence	3199..4035	Streptomycin	M28829	aph(3'')-Ib	100	804/804	JALPKT010000033.1 Salmonella enterica strain 1001 contig33, whole genome shotgun sequence	2396..3199	Streptomycin	AF321551	blaTEM-1B	99.88	861/861	JALPKT010000032.1 Salmonella enterica strain 1001 contig32, whole genome shotgun sequence	6079..6939	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	100	906/906	JALPKT010000029.1 Salmonella enterica strain 1001 contig29, whole genome shotgun sequence	147..1052	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	JALPKT010000033.1 Salmonella enterica strain 1001 contig33, whole genome shotgun sequence	7171..8384	Chloramphenicol, Florfenicol	AF118107	catA2	96.11	642/642	JALPKT010000044.1 Salmonella enterica strain 1001 contig44, whole genome shotgun sequence	743..1384	Chloramphenicol	X53796	qnrB6	100	645/645	JALPKT010000029.1 Salmonella enterica strain 1001 contig29, whole genome shotgun sequence	6674..7318	Ciprofloxacin	EF523819	ARR-3	100	453/453	JALPKT010000029.1 Salmonella enterica strain 1001 contig29, whole genome shotgun sequence	13658..14110	Rifampicin	JF806499	sul1	100	840/840	JALPKT010000029.1 Salmonella enterica strain 1001 contig29, whole genome shotgun sequence	10729..11568	Sulfamethoxazole	U12338	sul1	100	840/840	JALPKT010000029.1 Salmonella enterica strain 1001 contig29, whole genome shotgun sequence	5263..6102	Sulfamethoxazole	U12338	sul2	100	816/816	JALPKT010000033.1 Salmonella enterica strain 1001 contig33, whole genome shotgun sequence	1520..2335	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	JALPKT010000033.1 Salmonella enterica strain 1001 contig33, whole genome shotgun sequence	5296..6570	Doxycycline, Tetracycline	AF534183	dfrA27	100	474/474	JALPKT010000029.1 Salmonella enterica strain 1001 contig29, whole genome shotgun sequence	13052..13525	Trimethoprim	FJ459817																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(K)	99.82	560 / 560	JALPKT010000034.1 Salmonella enterica strain 1001 contig34, whole genome shotgun sequence	6877..7436																																																						avrA	JALPKT010000015.1	37039..37908	99.425	870	0						
GCA_032918845.1_PDT001951244.1_genomic.fna	Salmonella_enterica	0.5224	150.825 KB	10	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQIST010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00022260 SAMN37821976-rid19930403.denovo.06, whole genome shotgun sequence	117572..118009	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQIST010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00022260 SAMN37821976-rid19930403.guided.31, whole genome shotgun sequence	38926..39363	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIST010000007.1	122479..123348	99.77	870	0						
GCA_032918865.1_PDT001951246.1_genomic.fna	Salmonella_enterica	0.5212	90.421 KB	19	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQISU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040631 SAMN37822262-rid19931743.denovo.001, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQISU010000152.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040631 SAMN37822262-rid19931743.guided.039, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQISU010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040631 SAMN37822262-rid19931743.denovo.059, whole genome shotgun sequence	6639..6900																																																						avrA	DAQISU010000016.1	60552..61421	98.851	870	0						
GCA_032918885.1_PDT001951245.1_genomic.fna	Salmonella_enterica	0.5215	225.878 KB	7	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQISS010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040640 SAMN37822263-rid19930413.denovo.02, whole genome shotgun sequence	149856..150293	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQISS010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040640 SAMN37822263-rid19930413.guided.13, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQISS010000008.1	149619..150488	99.195	870	0						
GCA_032918905.1_PDT001951247.1_genomic.fna	Salmonella_enterica	0.5217	251.058 KB	7	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQISQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040611 SAMN37822261-rid19930423.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQISQ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040611 SAMN37822261-rid19930423.guided.24, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQISQ010000006.1	183968..184837	99.195	870	0						
GCA_032918925.1_PDT001951240.1_genomic.fna	Salmonella_enterica	0.5221	109.18 KB	14	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQISW010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040773 SAMN37822267-rid19930393.denovo.02, whole genome shotgun sequence	17813..18250	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQISW010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040773 SAMN37822267-rid19930393.guided.73, whole genome shotgun sequence	3304..3741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQISW010000009.1	124229..125097	99.195	870	0						
GCA_032918945.1_PDT001951241.1_genomic.fna	Salmonella_enterica	0.522	131.135 KB	12	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQISR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040771 SAMN37822266-rid19931723.denovo.01, whole genome shotgun sequence	138748..139185	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQISR010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040771 SAMN37822266-rid19931723.guided.53, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQISR010000005.1	124252..125121	99.195	870	0						
GCA_032918965.1_PDT001951238.1_genomic.fna	Salmonella_enterica	0.5206	77.997 KB	21	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQISV010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00040797 SAMN37822269-rid19928853.denovo.023, whole genome shotgun sequence	12887..13321	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQISV010000127.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00040797 SAMN37822269-rid19928853.guided.056, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032918985.1_PDT001951239.1_genomic.fna	Salmonella_enterica	0.5205	91.453 KB	18	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncFII(S),IncI2	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQISX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040775 SAMN37822268-rid19930383.denovo.001, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQISX010000126.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040775 SAMN37822268-rid19930383.guided.063, whole genome shotgun sequence	22185..22622	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQISX010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040775 SAMN37822268-rid19930383.denovo.095, whole genome shotgun sequence	357..487	enterobacteriales	IncFII(S)	100	262 / 262	DAQISX010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040775 SAMN37822268-rid19930383.denovo.041, whole genome shotgun sequence	25636..25897		enterobacteriales	IncI2	99.07	324 / 324	DAQISX010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040775 SAMN37822268-rid19930383.denovo.039, whole genome shotgun sequence	15772..16095																																									avrA	DAQISX010000005.1	93997..94866	98.851	870	0						
GCA_032919005.1_PDT001951235.1_genomic.fna	Salmonella_enterica	0.5209	96.829 KB	19	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQISZ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040923 SAMN37822272-rid19930363.denovo.003, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQISZ010000132.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040923 SAMN37822272-rid19930363.guided.041, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	DAQISZ010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040923 SAMN37822272-rid19930363.denovo.020, whole genome shotgun sequence	68147..68408																																																						avrA	DAQISZ010000002.1	39431..40299	98.851	870	0						
GCA_032919025.1_PDT001951232.1_genomic.fna	Salmonella_enterica	0.5215	156.319 KB	9	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQISY010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041006 SAMN37822274-rid19930353.denovo.17, whole genome shotgun sequence	42776..43213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQISY010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041006 SAMN37822274-rid19930353.guided.26, whole genome shotgun sequence	11554..11991	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQISY010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041006 SAMN37822274-rid19930353.denovo.53, whole genome shotgun sequence	400..530	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQISY010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041006 SAMN37822274-rid19930353.denovo.37, whole genome shotgun sequence	21018..21159																																																avrA	DAQISY010000014.1	43572..44441	99.195	870	0						
GCA_032919045.1_PDT001951234.1_genomic.fna	Salmonella_enterica	0.5217	92.294 KB	19	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	9,46:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	9,46	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Sokode		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQITB010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040988 SAMN37822273-rid19928843.denovo.004, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQITB010000124.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040988 SAMN37822273-rid19928843.guided.041, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQITB010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040988 SAMN37822273-rid19928843.denovo.037, whole genome shotgun sequence	43514..43775																																																						avrA	DAQITB010000003.1	93586..94455	98.851	870	0						
GCA_032919065.1_PDT001951226.1_genomic.fna	Salmonella_enterica	0.5208	94.782 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQITA010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00047909 SAMN37822366-rid19931693.denovo.018, whole genome shotgun sequence	12889..13323	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQITA010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00047909 SAMN37822366-rid19931693.guided.039, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pHCM2)	96.83	884 / 875	DAQITA010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00047909 SAMN37822366-rid19931693.denovo.012, whole genome shotgun sequence	22650..23533																																																																	
GCA_032919085.1_PDT001951230.1_genomic.fna	Salmonella_enterica	0.5215	110.312 KB	13	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul1,sul1,dfrA21,dfrA21	0		2	Col440I,IncFIB(pHCM2),IncFIB(pHCM2)	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQITC010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00047435 SAMN37822363-rid19930343.denovo.03, whole genome shotgun sequence	93919..94356	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQITC010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00047435 SAMN37822363-rid19930343.guided.19, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	DAQITC010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00047435 SAMN37822363-rid19930343.denovo.13, whole genome shotgun sequence	35110..35949	Sulfamethoxazole	U12338	sul1	100	840/840	DAQITC010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00047435 SAMN37822363-rid19930343.guided.24, whole genome shotgun sequence	4140..4979	Sulfamethoxazole	U12338	dfrA21	100	498/498	DAQITC010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00047435 SAMN37822363-rid19930343.denovo.13, whole genome shotgun sequence	36477..36974	Trimethoprim	AY552589	dfrA21	100	498/498	DAQITC010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00047435 SAMN37822363-rid19930343.guided.24, whole genome shotgun sequence	3115..3612	Trimethoprim	AY552589																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col440I	93.64	110 / 114	DAQITC010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00047435 SAMN37822363-rid19930343.denovo.70, whole genome shotgun sequence	1189..1298	enterobacteriales	IncFIB(pHCM2)	97.29	884 / 875	DAQITC010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00047435 SAMN37822363-rid19930343.denovo.13, whole genome shotgun sequence	11561..12444		enterobacteriales	IncFIB(pHCM2)	97.29	884 / 875	DAQITC010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00047435 SAMN37822363-rid19930343.guided.24, whole genome shotgun sequence	27645..28528																																									avrA	DAQITC010000009.1	95115..95984	99.195	870	0						
GCA_032919105.1_PDT001951223.1_genomic.fna	Salmonella_enterica	0.5207	80.139 KB	21	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQITK010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00047969 SAMN37822369-rid19928803.denovo.025, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQITK010000115.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00047969 SAMN37822369-rid19928803.guided.040, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pHCM2)	96.83	884 / 875	DAQITK010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00047969 SAMN37822369-rid19928803.denovo.010, whole genome shotgun sequence	38206..39089																																																																	
GCA_032919125.1_PDT001951225.1_genomic.fna	Salmonella_enterica	0.5208	65.202 KB	22	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQITF010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00047956 SAMN37822367-rid19930313.denovo.007, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQITF010000127.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00047956 SAMN37822367-rid19930313.guided.056, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032919145.1_PDT001951218.1_genomic.fna	Salmonella_enterica	0.5215	96.933 KB	15	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	8	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-55,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaCTX-M-55,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,qnrS2,qnrS2	0		2	IncQ2,IncQ2,IncX1	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQITH010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.denovo.24, whole genome shotgun sequence	17822..18259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQITH010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.guided.47, whole genome shotgun sequence	11372..11809	Amikacin, Tobramycin	NC_003197	blaCTX-M-55	100	876/876	DAQITH010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.denovo.37, whole genome shotgun sequence	9603..10478	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-220	99.88	861/861	DAQITH010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.denovo.37, whole genome shotgun sequence	7202..8062	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQITH010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.denovo.37, whole genome shotgun sequence	7202..8062	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQITH010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.denovo.37, whole genome shotgun sequence	7202..8062	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQITH010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.denovo.37, whole genome shotgun sequence	7202..8062	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQITH010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.denovo.37, whole genome shotgun sequence	7202..8062	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-55	100	876/876	DAQITH010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.guided.60, whole genome shotgun sequence	14213..15088	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-220	99.88	861/861	DAQITH010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.guided.60, whole genome shotgun sequence	11812..12672	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQITH010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.guided.60, whole genome shotgun sequence	11812..12672	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQITH010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.guided.60, whole genome shotgun sequence	11812..12672	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQITH010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.guided.60, whole genome shotgun sequence	11812..12672	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQITH010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.guided.60, whole genome shotgun sequence	11812..12672	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrS2	100	657/657	DAQITH010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.denovo.77, whole genome shotgun sequence	6379..7035	Ciprofloxacin	DQ485530	qnrS2	100	657/657	DAQITH010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.guided.78, whole genome shotgun sequence	779..1435	Ciprofloxacin	DQ485530																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	IncQ2	98.89	450 / 450	DAQITH010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.denovo.77, whole genome shotgun sequence	4298..4747	enterobacteriales	IncQ2	98.89	450 / 450	DAQITH010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.guided.78, whole genome shotgun sequence	3067..3516		enterobacteriales	IncX1	98.66	374 / 374	DAQITH010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022809 SAMN37821987-rid19928783.denovo.37, whole genome shotgun sequence	19758..20131																																									avrA	DAQITH010000008.1	95115..95983	99.195	870	0						
GCA_032919165.1_PDT001951224.1_genomic.fna	Salmonella_enterica	0.5207	65.616 KB	25	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQITD010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00047968 SAMN37822368-rid19928813.denovo.022, whole genome shotgun sequence	12859..13293	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQITD010000129.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00047968 SAMN37822368-rid19928813.guided.045, whole genome shotgun sequence	14806..15240	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pHCM2)	96.83	884 / 875	DAQITD010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00047968 SAMN37822368-rid19928813.denovo.007, whole genome shotgun sequence	38206..39089																																																																	
GCA_032919185.1_PDT001951216.1_genomic.fna	Salmonella_enterica	0.5208	102.539 KB	16	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQITE010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00048418 SAMN37822375-rid19931673.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQITE010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00048418 SAMN37822375-rid19931673.guided.34, whole genome shotgun sequence	15679..16113	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032919205.1_PDT001951214.1_genomic.fna	Salmonella_enterica	0.5238	33.059 KB	46	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQITI010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00049146 SAMN37822377-rid19928773.denovo.054, whole genome shotgun sequence	14065..14502	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQITI010000254.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00049146 SAMN37822377-rid19928773.guided.233, whole genome shotgun sequence	63..500	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQITI010000026.1	43597..44466	99.195	870	0						
GCA_032919225.1_PDT001951215.1_genomic.fna	Salmonella_enterica	0.5221	147.558 KB	10	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQITG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00048997 SAMN37822376-rid19930273.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQITG010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00048997 SAMN37822376-rid19930273.guided.35, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQITG010000014.1	43549..44418	99.195	870	0						
GCA_032919245.1_PDT001951213.1_genomic.fna	Salmonella_enterica	0.5223	47.649 KB	33	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQITJ010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00049172 SAMN37822378-rid19928763.denovo.012, whole genome shotgun sequence	16075..16512	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQITJ010000183.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00049172 SAMN37822378-rid19928763.guided.146, whole genome shotgun sequence	2802..3239	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.66	374 / 374	DAQITJ010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00049172 SAMN37822378-rid19928763.denovo.054, whole genome shotgun sequence	10524..10897																																																						avrA	DAQITJ010000018.1	60935..61804	99.195	870	0						
GCA_032919265.1_PDT001951208.1_genomic.fna	Salmonella_enterica	0.5216	191.076 KB	8	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQITL010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00060025 SAMN37822383-rid19928743.denovo.03, whole genome shotgun sequence	86699..87136	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQITL010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00060025 SAMN37822383-rid19928743.guided.17, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQITL010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00060025 SAMN37822383-rid19928743.denovo.37, whole genome shotgun sequence	1744..1897																																																						avrA	DAQITL010000012.1	95115..95984	99.195	870	0						
GCA_032919285.1_PDT001951207.1_genomic.fna	Salmonella_enterica	0.5221	271.6 KB	7	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQITN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022814 SAMN37821988-rid19930243.denovo.01, whole genome shotgun sequence	150054..150491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQITN010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022814 SAMN37821988-rid19930243.guided.31, whole genome shotgun sequence	653..1090	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQITN010000012.1	95495..96364	99.195	870	0						
GCA_032919305.1_PDT001951206.1_genomic.fna	Salmonella_enterica	0.5221	117.426 KB	12	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQITM010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00060026 SAMN37822384-rid19931653.denovo.02, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQITM010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00060026 SAMN37822384-rid19931653.guided.39, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQITM010000008.1	95115..95984	99.195	870	0						
GCA_032919325.1_PDT001951201.1_genomic.fna	Salmonella_enterica	0.5221	165.137 KB	9	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQITP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00023141 SAMN37821992-rid19931643.denovo.01, whole genome shotgun sequence	149896..150333	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQITP010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00023141 SAMN37821992-rid19931643.guided.41, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQITP010000013.1	60935..61804	99.195	870	0						
GCA_032919345.1_PDT001951202.1_genomic.fna	Salmonella_enterica	0.5213	113.477 KB	14	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQITQ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00023096 SAMN37821991-rid19930213.denovo.003, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQITQ010000115.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00023096 SAMN37821991-rid19930213.guided.066, whole genome shotgun sequence	11596..12033	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQITQ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00023096 SAMN37821991-rid19930213.denovo.050, whole genome shotgun sequence	6639..6900																																																						avrA	DAQITQ010000005.1	93997..94866	98.851	870	0						
GCA_032919365.1_PDT001951199.1_genomic.fna	Salmonella_enterica	0.522	84.695 KB	17	aroC_147,dnaN_13,hemD_15,hisD_123,purE_140,sucA_7,thrA_17	466	3,10:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_140	sucA	100	100	sucA_7	thrA	100	100	thrA_17	3,10	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Zanzibar		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQITO010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00021238 SAMN37821949-rid19930193.denovo.24, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQITO010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00021238 SAMN37821949-rid19930193.guided.60, whole genome shotgun sequence	7085..7522	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.45	193 / 193	DAQITO010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00021238 SAMN37821949-rid19930193.denovo.83, whole genome shotgun sequence	519..711																																																						avrA	DAQITO010000011.1	102701..103569	99.655	869	0						
GCA_032919385.1_PDT001951198.1_genomic.fna	Salmonella_enterica	0.522	217.164 KB	8	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQITS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00021363 SAMN37821952-rid19928723.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQITS010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00021363 SAMN37821952-rid19928723.guided.35, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQITS010000008.1	149780..150649	99.195	870	0						
GCA_032919405.1_PDT001951197.1_genomic.fna	Salmonella_enterica	0.5219	239.904 KB	8	aroC_75,dnaN_67,hemD_10,hisD_17,purE_15,sucA_9,thrA_66	197	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_75	dnaN	100	100	dnaN_67	hemD	100	100	hemD_10	hisD	100	100	hisD_17	purE	100	100	purE_15	sucA	100	100	sucA_9	thrA	100	100	thrA_66	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQITR010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00024414 SAMN37822024-rid19930183.denovo.07, whole genome shotgun sequence	100895..101332	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQITR010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00024414 SAMN37822024-rid19930183.guided.14, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQITR010000008.1	149735..150604	99.77	870	0						
GCA_032919425.1_PDT001951193.1_genomic.fna	Salmonella_enterica	0.5213	107.491 KB	15	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQITY010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00024598 SAMN37822028-rid19928713.denovo.003, whole genome shotgun sequence	261761..262198	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQITY010000135.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00024598 SAMN37822028-rid19928713.guided.039, whole genome shotgun sequence	33739..34176	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQITY010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00024598 SAMN37822028-rid19928713.denovo.053, whole genome shotgun sequence	6639..6900																																																						avrA	DAQITY010000016.1	39431..40300	98.851	870	0						
GCA_032919445.1_PDT001951192.1_genomic.fna	Salmonella_enterica	0.5213	107.85 KB	15	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQITU010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00024654 SAMN37822029-rid19930173.denovo.003, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQITU010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00024654 SAMN37822029-rid19930173.guided.064, whole genome shotgun sequence	9968..10405	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQITU010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00024654 SAMN37822029-rid19930173.denovo.080, whole genome shotgun sequence	357..487	enterobacteriales	IncFII(S)	100	262 / 262	DAQITU010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00024654 SAMN37822029-rid19930173.denovo.022, whole genome shotgun sequence	68147..68408																																																avrA	DAQITU010000008.1	60574..61443	98.851	870	0						
GCA_032919465.1_PDT001951188.1_genomic.fna	Salmonella_enterica	0.521	104.441 KB	16	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQITZ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00024790 SAMN37822033-rid19928703.denovo.002, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQITZ010000131.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00024790 SAMN37822033-rid19928703.guided.040, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQITZ010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00024790 SAMN37822033-rid19928703.denovo.036, whole genome shotgun sequence	43514..43775																																																						avrA	DAQITZ010000007.1	93586..94455	98.851	870	0						
GCA_032919485.1_PDT001951189.1_genomic.fna	Salmonella_enterica	0.5226	111.955 KB	14	aroC_101,dnaN_64,hemD_25,hisD_163,purE_84,sucA_6,thrA_101	523	9:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_101	dnaN	100	100	dnaN_64	hemD	100	100	hemD_25	hisD	100	100	hisD_163	purE	100	100	purE_84	sucA	100	100	sucA_6	thrA	100	100	thrA_101	9	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Wangata		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQITW010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00024786 SAMN37822032-rid19931593.denovo.02, whole genome shotgun sequence	100..537	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQITW010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00024786 SAMN37822032-rid19931593.guided.57, whole genome shotgun sequence	14160..14597	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQITW010000008.1	83800..84669	98.966	870	0						
GCA_032919505.1_PDT001951186.1_genomic.fna	Salmonella_enterica	0.5218	172.884 KB	9	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQITT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00024793 SAMN37822034-rid19931583.denovo.01, whole genome shotgun sequence	379086..379523	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQITT010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00024793 SAMN37822034-rid19931583.guided.16, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQITT010000006.1	124158..125027	99.195	870	0						
GCA_032919515.1_PDT001951182.1_genomic.fna	Salmonella_enterica	0.5222	289.782 KB	6	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQITV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025018 SAMN37822038-rid19930143.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQITV010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025018 SAMN37822038-rid19930143.guided.27, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQITV010000010.1	95115..95984	99.195	870	0						
GCA_032919545.1_PDT001951185.1_genomic.fna	Salmonella_enterica	0.5216	179.819 KB	6	aroC_2,dnaN_4,hemD_935,hisD_43,purE_481,sucA_2,thrA_425	7123	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_4	hemD	100	100	hemD_935	hisD	100	100	hisD_43	purE	100	100	purE_481	sucA	100	100	sucA_2	thrA	100	100	thrA_425	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQITX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00024811 SAMN37822035-rid19931573.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQITX010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00024811 SAMN37822035-rid19931573.guided.18, whole genome shotgun sequence	44294..44731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQITX010000006.1	141993..142862	99.77	870	0						
GCA_032919565.1_PDT001951180.1_genomic.fna	Salmonella_enterica	0.5221	189.928 KB	8	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIUA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025225 SAMN37822040-rid19930133.denovo.01, whole genome shotgun sequence	93919..94356	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIUA010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025225 SAMN37822040-rid19930133.guided.33, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIUA010000013.1	60962..61831	99.195	870	0						
GCA_032919585.1_PDT001951178.1_genomic.fna	Salmonella_enterica	0.5227	161.413 KB	10	aroC_75,dnaN_67,hemD_10,hisD_17,purE_15,sucA_9,thrA_66	197	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_75	dnaN	100	100	dnaN_67	hemD	100	100	hemD_10	hisD	100	100	hisD_17	purE	100	100	purE_15	sucA	100	100	sucA_9	thrA	100	100	thrA_66	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQIUB010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025337 SAMN37822042-rid19928683.denovo.05, whole genome shotgun sequence	100895..101332	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQIUB010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025337 SAMN37822042-rid19928683.guided.41, whole genome shotgun sequence	13909..14346	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIUB010000006.1	166824..167693	99.77	870	0						
GCA_032919605.1_PDT001951177.1_genomic.fna	Salmonella_enterica	0.5224	149.906 KB	11	aroC_75,dnaN_67,hemD_10,hisD_17,purE_15,sucA_9,thrA_66	197	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_75	dnaN	100	100	dnaN_67	hemD	100	100	hemD_10	hisD	100	100	hisD_17	purE	100	100	purE_15	sucA	100	100	sucA_9	thrA	100	100	thrA_66	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQIUF010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025338 SAMN37822043-rid19930123.denovo.03, whole genome shotgun sequence	100895..101332	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQIUF010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025338 SAMN37822043-rid19930123.guided.38, whole genome shotgun sequence	14113..14550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIUF010000016.1	62322..63191	99.77	870	0						
GCA_032919625.1_PDT001951176.1_genomic.fna	Salmonella_enterica	0.5205	186.163 KB	9	aroC_6,dnaN_7,hemD_10,hisD_10,purE_2,sucA_10,thrA_14	359	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_2	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIUC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041054 SAMN37822276-rid19931533.denovo.01, whole genome shotgun sequence	138776..139213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIUC010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041054 SAMN37822276-rid19931533.guided.29, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIUC010000007.1	149790..150659	99.31	870	0						
GCA_032919645.1_PDT001951174.1_genomic.fna	Salmonella_enterica	0.5218	156.33 KB	8	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIUD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041157 SAMN37822278-rid19931513.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIUD010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041157 SAMN37822278-rid19931513.guided.30, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIUD010000007.1	124140..125009	99.195	870	0						
GCA_032919665.1_PDT001951173.1_genomic.fna	Salmonella_enterica	0.5229	58.532 KB	26	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIUE010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041361 SAMN37822279-rid19928673.denovo.019, whole genome shotgun sequence	17223..17660	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIUE010000148.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041361 SAMN37822279-rid19928673.guided.048, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQIUE010000127.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041361 SAMN37822279-rid19928673.denovo.130, whole genome shotgun sequence	478..608																																																						avrA	DAQIUE010000012.1	43666..44535	99.195	870	0						
GCA_032919685.1_PDT001951170.1_genomic.fna	Salmonella_enterica	0.5225	93.333 KB	14	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIUH010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041619 SAMN37822282-rid19930103.denovo.04, whole genome shotgun sequence	52289..52726	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIUH010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041619 SAMN37822282-rid19930103.guided.63, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIUH010000023.1	61533..62402	99.195	870	0						
GCA_032919705.1_PDT001951172.1_genomic.fna	Salmonella_enterica	0.5216	118.836 KB	13	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIUG010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041419 SAMN37822280-rid19930113.denovo.26, whole genome shotgun sequence	17247..17684	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIUG010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041419 SAMN37822280-rid19930113.guided.12, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIUG010000009.1	95115..95984	99.195	870	0						
GCA_032919745.1_PDT001951164.1_genomic.fna	Salmonella_enterica	0.5221	56.686 KB	26	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	-:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	-	r	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:r:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIUM010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00041950 SAMN37822287-rid19931463.denovo.029, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIUM010000181.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00041950 SAMN37822287-rid19931463.guided.044, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQIUM010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00041950 SAMN37822287-rid19931463.denovo.086, whole genome shotgun sequence	6639..6900																																																						avrA	DAQIUM010000004.1	39537..40406	98.851	870	0						
GCA_032919765.1_PDT001951167.1_genomic.fna	Salmonella_enterica	0.5226	100.152 KB	14	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIUJ010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041642 SAMN37822284-rid19930093.denovo.05, whole genome shotgun sequence	52326..52763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIUJ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041642 SAMN37822284-rid19930093.guided.55, whole genome shotgun sequence	15518..15955	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIUJ010000023.1	43547..44416	99.195	870	0						
GCA_032919785.1_PDT001951161.1_genomic.fna	Salmonella_enterica	0.5219	149.604 KB	10	aroC_147,dnaN_13,hemD_15,hisD_123,purE_140,sucA_7,thrA_17	466	3,10:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_140	sucA	100	100	sucA_7	thrA	100	100	thrA_17	3,10	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Zanzibar		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIUL010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00042190 SAMN37822290-rid19928643.denovo.13, whole genome shotgun sequence	52403..52840	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIUL010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00042190 SAMN37822290-rid19928643.guided.17, whole genome shotgun sequence	20585..21022	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIUL010000008.1	147932..148799	99.54	869	0						
GCA_032919805.1_PDT001951169.1_genomic.fna	Salmonella_enterica	0.5224	78.192 KB	19	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIUI010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041636 SAMN37822283-rid19931493.denovo.024, whole genome shotgun sequence	20198..20635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIUI010000116.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041636 SAMN37822283-rid19931493.guided.072, whole genome shotgun sequence	14294..14731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIUI010000010.1	43613..44482	99.195	870	0						
GCA_032919825.1_PDT001951165.1_genomic.fna	Salmonella_enterica	0.5223	140.276 KB	12	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIUK010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041757 SAMN37822286-rid19931473.denovo.17, whole genome shotgun sequence	42765..43202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIUK010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00041757 SAMN37822286-rid19931473.guided.35, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIUK010000008.1	149619..150488	99.195	870	0						
GCA_032919845.1_PDT001951160.1_genomic.fna	Salmonella_enterica	0.5217	156.323 KB	10	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIUN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00042222 SAMN37822291-rid19930073.denovo.01, whole genome shotgun sequence	149896..150333	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIUN010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00042222 SAMN37822291-rid19930073.guided.20, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIUN010000008.1	149619..150488	99.195	870	0						
GCA_032919865.1_PDT001951156.1_genomic.fna	Salmonella_enterica	0.5207	82.628 KB	20	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIUP010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042367 SAMN37822294-rid19928613.denovo.009, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIUP010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042367 SAMN37822294-rid19928613.guided.054, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQIUP010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042367 SAMN37822294-rid19928613.denovo.011, whole genome shotgun sequence	23493..24367																																																																	
GCA_032919885.1_PDT001951158.1_genomic.fna	Salmonella_enterica	0.5219	140.179 KB	11	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIUO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00042235 SAMN37822293-rid19928633.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIUO010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00042235 SAMN37822293-rid19928633.guided.21, whole genome shotgun sequence	9823..10260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIUO010000007.1	124156..125025	99.195	870	0						
GCA_032919905.1_PDT001951153.1_genomic.fna	Salmonella_enterica	0.5206	101.11 KB	17	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIUR010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042586 SAMN37822297-rid19928603.denovo.04, whole genome shotgun sequence	29911..30345	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIUR010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042586 SAMN37822297-rid19928603.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQIUR010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042586 SAMN37822297-rid19928603.denovo.16, whole genome shotgun sequence	23493..24367																																																																	
GCA_032919925.1_PDT001951155.1_genomic.fna	Salmonella_enterica	0.5217	50.421 KB	33	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIUQ010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042418 SAMN37822295-rid19930063.denovo.012, whole genome shotgun sequence	12837..13271	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIUQ010000170.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042418 SAMN37822295-rid19930063.guided.063, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQIUQ010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042418 SAMN37822295-rid19930063.denovo.004, whole genome shotgun sequence	7632..8506																																																																	
GCA_032919945.1_PDT001951152.1_genomic.fna	Salmonella_enterica	0.5223	90.837 KB	15	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	9,46:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	I 9,46:l,z13:1,5	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIUS010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Uganda isolate AUSMDU00042592 SAMN37822298-rid19930053.denovo.06, whole genome shotgun sequence	15507..15944	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIUS010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Uganda isolate AUSMDU00042592 SAMN37822298-rid19930053.guided.29, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIUS010000020.1	83827..84695	99.655	869	0						
GCA_032919965.1_PDT001951150.1_genomic.fna	Salmonella_enterica	0.5224	99.946 KB	15	aroC_147,dnaN_13,hemD_15,hisD_123,purE_140,sucA_7,thrA_17	466	9,46:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_140	sucA	100	100	sucA_7	thrA	100	100	thrA_17	9,46	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Cochin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIUV010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00042611 SAMN37822300-rid19930043.denovo.27, whole genome shotgun sequence	15507..15944	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIUV010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00042611 SAMN37822300-rid19930043.guided.57, whole genome shotgun sequence	8435..8872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIUV010000007.1	156188..157056	99.655	869	0						
GCA_032919985.1_PDT001951151.1_genomic.fna	Salmonella_enterica	0.5226	104.934 KB	15	aroC_147,dnaN_13,hemD_15,hisD_123,purE_140,sucA_7,thrA_17	466	9,46:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_140	sucA	100	100	sucA_7	thrA	100	100	thrA_17	9,46	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Cochin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIUT010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00042610 SAMN37822299-rid19928593.denovo.28, whole genome shotgun sequence	12537..12974	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIUT010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00042610 SAMN37822299-rid19928593.guided.43, whole genome shotgun sequence	24988..25425	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIUT010000007.1	102725..103593	99.655	869	0						
GCA_032920005.1_PDT001951149.1_genomic.fna	Salmonella_enterica	0.5209	98.128 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA7,dfrA7	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIUU010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.denovo.004, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIUU010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.denovo.087, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIUU010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.denovo.087, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQIUU010000121.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.guided.065, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIUU010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.guided.086, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIUU010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.guided.086, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQIUU010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.denovo.100, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQIUU010000124.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.guided.098, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQIUU010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.denovo.076, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQIUU010000122.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.guided.075, whole genome shotgun sequence	262..921	Chloramphenicol	V00622	sul1	100	840/840	DAQIUU010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.denovo.076, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQIUU010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.denovo.087, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQIUU010000122.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.guided.075, whole genome shotgun sequence	7989..8828	Sulfamethoxazole	U12338	sul2	100	816/816	DAQIUU010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.guided.086, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQIUU010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.denovo.076, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQIUU010000122.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.guided.075, whole genome shotgun sequence	6945..7418	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQIUU010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00042635 SAMN37822301-rid19931433.denovo.013, whole genome shotgun sequence	23493..24367																																																																	
GCA_032920025.1_PDT001951148.1_genomic.fna	Salmonella_enterica	0.522	55.687 KB	25	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	-:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	-	r	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:r:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIUW010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00042702 SAMN37822302-rid19928583.denovo.016, whole genome shotgun sequence	80488..80925	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIUW010000173.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00042702 SAMN37822302-rid19928583.guided.044, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQIUW010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00042702 SAMN37822302-rid19928583.denovo.066, whole genome shotgun sequence	6639..6900																																																						avrA	DAQIUW010000005.1	93586..94455	98.851	870	0						
GCA_032920045.1_PDT001951144.1_genomic.fna	Salmonella_enterica	0.5223	189.852 KB	10	aroC_75,dnaN_67,hemD_10,hisD_17,purE_15,sucA_9,thrA_66	197	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_75	dnaN	100	100	dnaN_67	hemD	100	100	hemD_10	hisD	100	100	hisD_17	purE	100	100	purE_15	sucA	100	100	sucA_9	thrA	100	100	thrA_66	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQIUX010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025348 SAMN37822045-rid19931423.denovo.05, whole genome shotgun sequence	100895..101332	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQIUX010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025348 SAMN37822045-rid19931423.guided.25, whole genome shotgun sequence	10181..10618	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIUX010000014.1	45053..45922	99.77	870	0						
GCA_032920065.1_PDT001951141.1_genomic.fna	Salmonella_enterica	0.5218	279.904 KB	6	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIUZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025502 SAMN37822048-rid19928543.denovo.01, whole genome shotgun sequence	42609..43046	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIUZ010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025502 SAMN37822048-rid19928543.guided.25, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIUZ010000010.1	95115..95984	99.195	870	0						
GCA_032920085.1_PDT001951142.1_genomic.fna	Salmonella_enterica	0.5225	197.531 KB	8	aroC_75,dnaN_67,hemD_10,hisD_17,purE_15,sucA_9,thrA_66	197	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_75	dnaN	100	100	dnaN_67	hemD	100	100	hemD_10	hisD	100	100	hisD_17	purE	100	100	purE_15	sucA	100	100	sucA_9	thrA	100	100	thrA_66	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQIUY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025476 SAMN37822047-rid19930023.denovo.01, whole genome shotgun sequence	431327..431764	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQIUY010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025476 SAMN37822047-rid19930023.guided.25, whole genome shotgun sequence	35651..36088	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIUY010000002.1	149613..150482	99.77	870	0						
GCA_032920105.1_PDT001951140.1_genomic.fna	Salmonella_enterica	0.5199	129.32 KB	14	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIVA010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00025508 SAMN37822049-rid19930013.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIVA010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00025508 SAMN37822049-rid19930013.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032920125.1_PDT001951138.1_genomic.fna	Salmonella_enterica	0.5222	97.898 KB	15	aroC_61,dnaN_294,hemD_25,hisD_194,purE_136,sucA_45,thrA_126	1419	-:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_294	hemD	100	100	hemD_25	hisD	100	100	hisD_194	purE	100	100	purE_136	sucA	100	100	sucA_45	thrA	100	100	thrA_126	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQIVD010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Waycross isolate AUSMDU00025579 SAMN37822051-rid19928533.denovo.48, whole genome shotgun sequence	12505..12942	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQIVD010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Waycross isolate AUSMDU00025579 SAMN37822051-rid19928533.guided.47, whole genome shotgun sequence	14173..14610	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIVD010000007.1	39459..40328	99.425	870	0						
GCA_032920145.1_PDT001951139.1_genomic.fna	Salmonella_enterica	0.5203	97.157 KB	16	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIVB010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00025570 SAMN37822050-rid19931413.denovo.005, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIVB010000116.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00025570 SAMN37822050-rid19931413.guided.056, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032920165.1_PDT001951136.1_genomic.fna	Salmonella_enterica	0.5219	162.495 KB	9	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col(pHAD28)	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIVC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025654 SAMN37822053-rid19928513.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIVC010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025654 SAMN37822053-rid19928513.guided.38, whole genome shotgun sequence	15844..16281	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQIVC010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025654 SAMN37822053-rid19928513.denovo.51, whole genome shotgun sequence	546..674																																																						avrA	DAQIVC010000009.1	95115..95984	99.195	870	0						
GCA_032920185.1_PDT001951135.1_genomic.fna	Salmonella_enterica	0.5224	95.943 KB	15	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIVE010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00021475 SAMN37821955-rid19930003.denovo.20, whole genome shotgun sequence	17250..17687	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIVE010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00021475 SAMN37821955-rid19930003.guided.47, whole genome shotgun sequence	13836..14273	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIVE010000007.1	105497..106366	99.195	870	0						
GCA_032920205.1_PDT001951130.1_genomic.fna	Salmonella_enterica	0.5214	225.84 KB	7	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIVG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025871 SAMN37822058-rid19929973.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIVG010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00025871 SAMN37822058-rid19929973.guided.14, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIVG010000009.1	124184..125053	99.195	870	0						
GCA_032920225.1_PDT001951133.1_genomic.fna	Salmonella_enterica	0.5219	81.742 KB	21	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	-:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	-	r	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:r:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIVF010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00025734 SAMN37822055-rid19929993.denovo.051, whole genome shotgun sequence	37656..38093	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIVF010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00025734 SAMN37822055-rid19929993.guided.050, whole genome shotgun sequence	37697..38134	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQIVF010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00025734 SAMN37822055-rid19929993.denovo.024, whole genome shotgun sequence	68859..69120																																																						avrA	DAQIVF010000011.1	93586..94454	98.851	870	0						
GCA_032920245.1_PDT001951127.1_genomic.fna	Salmonella_enterica	0.5203	83.936 KB	20	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIVI010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00026098 SAMN37822061-rid19929953.denovo.014, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIVI010000120.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00026098 SAMN37822061-rid19929953.guided.040, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032920265.1_PDT001951129.1_genomic.fna	Salmonella_enterica	0.521	128.278 KB	13	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIVH010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00025919 SAMN37822059-rid19931393.denovo.004, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIVH010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00025919 SAMN37822059-rid19931393.guided.034, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQIVH010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00025919 SAMN37822059-rid19931393.denovo.073, whole genome shotgun sequence	1251..1381	enterobacteriales	IncFII(S)	99.62	262 / 262	DAQIVH010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00025919 SAMN37822059-rid19931393.denovo.047, whole genome shotgun sequence	6984..7245																																																avrA	DAQIVH010000003.1	93586..94455	98.851	870	0						
GCA_032920285.1_PDT001951126.1_genomic.fna	Salmonella_enterica	0.521	138.746 KB	11	aroC_147,dnaN_13,hemD_15,hisD_123,purE_140,sucA_7,thrA_17	466	3,10:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_140	sucA	100	100	sucA_7	thrA	100	100	thrA_17	3,10	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Zanzibar		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIVJ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00026304 SAMN37822062-rid19928493.denovo.06, whole genome shotgun sequence	52273..52710	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIVJ010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00026304 SAMN37822062-rid19928493.guided.09, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIVJ010000007.1	122555..123422	99.54	869	0						
GCA_032920305.1_PDT001951125.1_genomic.fna	Salmonella_enterica	0.5219	137.243 KB	12	aroC_147,dnaN_13,hemD_15,hisD_123,purE_140,sucA_7,thrA_17	466	3,10:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_140	sucA	100	100	sucA_7	thrA	100	100	thrA_17	3,10	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Zanzibar		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIVL010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00026318 SAMN37822063-rid19929943.denovo.07, whole genome shotgun sequence	38033..38470	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIVL010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00026318 SAMN37822063-rid19929943.guided.33, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIVL010000006.1	122506..123374	99.655	869	0						
GCA_032920325.1_PDT001951123.1_genomic.fna	Salmonella_enterica	0.5205	79.913 KB	22	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIVK010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00026377 SAMN37822064-rid19929933.denovo.006, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIVK010000117.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00026377 SAMN37822064-rid19929933.guided.076, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQIVK010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00026377 SAMN37822064-rid19929933.denovo.014, whole genome shotgun sequence	23493..24367																																																																	
GCA_032920345.1_PDT001951122.1_genomic.fna	Salmonella_enterica	0.521	91.885 KB	18	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIVM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00026401 SAMN37822065-rid19929923.denovo.001, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIVM010000149.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00026401 SAMN37822065-rid19929923.guided.102, whole genome shotgun sequence	1981..2418	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQIVM010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00026401 SAMN37822065-rid19929923.denovo.035, whole genome shotgun sequence	43514..43775																																																						avrA	DAQIVM010000006.1	60959..61828	98.851	870	0						
GCA_032920375.1_PDT001951121.1_genomic.fna	Salmonella_enterica	0.5218	63.337 KB	24	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIVN010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00026630 SAMN37822066-rid19928483.denovo.032, whole genome shotgun sequence	121..558	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIVN010000183.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00026630 SAMN37822066-rid19928483.guided.087, whole genome shotgun sequence	13984..14421	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQIVN010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00026630 SAMN37822066-rid19928483.denovo.065, whole genome shotgun sequence	6639..6900																																																						avrA	DAQIVN010000008.1	39431..40300	98.851	870	0						
GCA_032920405.1_PDT001951119.1_genomic.fna	Salmonella_enterica	0.5216	58.494 KB	25	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	9,46:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	9,46	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Sokode		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIVO010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00026721 SAMN37822068-rid19931363.denovo.088, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIVO010000187.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00026721 SAMN37822068-rid19931363.guided.086, whole genome shotgun sequence	15494..15931	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQIVO010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00026721 SAMN37822068-rid19931363.denovo.066, whole genome shotgun sequence	6640..6901																																																						avrA	DAQIVO010000004.1	93997..94866	98.851	870	0						
GCA_032920425.1_PDT001951110.1_genomic.fna	Salmonella_enterica	0.523	32.023 KB	46	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIVU010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00030688 SAMN37822134-rid19931333.denovo.006, whole genome shotgun sequence	12813..13247	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIVU010000283.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00030688 SAMN37822134-rid19931333.guided.066, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032920445.1_PDT001951114.1_genomic.fna	Salmonella_enterica	0.5226	94.329 KB	17	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIVR010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00026988 SAMN37822073-rid19931343.denovo.002, whole genome shotgun sequence	42609..43046	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIVR010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00026988 SAMN37822073-rid19931343.guided.028, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIVR010000008.1	95115..95984	99.31	870	0						
GCA_032920465.1_PDT001951116.1_genomic.fna	Salmonella_enterica	0.5222	156.319 KB	10	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIVP010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00026765 SAMN37822071-rid19928473.denovo.03, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIVP010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00026765 SAMN37822071-rid19928473.guided.35, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	97.37	152 / 154	DAQIVP010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00026765 SAMN37822071-rid19928473.denovo.55, whole genome shotgun sequence	643..794																																																						avrA	DAQIVP010000017.1	43663..44532	99.195	870	0						
GCA_032920475.1_PDT001951109.1_genomic.fna	Salmonella_enterica	0.5207	96.08 KB	17	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIVT010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00030737 SAMN37822135-rid19931323.denovo.04, whole genome shotgun sequence	12847..13281	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIVT010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00030737 SAMN37822135-rid19931323.guided.54, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032920505.1_PDT001951115.1_genomic.fna	Salmonella_enterica	0.5216	191.101 KB	8	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIVQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00026837 SAMN37822072-rid19929903.denovo.01, whole genome shotgun sequence	150080..150517	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIVQ010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00026837 SAMN37822072-rid19929903.guided.17, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIVQ010000012.1	95115..95984	99.195	870	0						
GCA_032920525.1_PDT001951108.1_genomic.fna	Salmonella_enterica	0.5226	92.02 KB	18	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIVS010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00030760 SAMN37822136-rid19931313.denovo.44, whole genome shotgun sequence	14131..14568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIVS010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00030760 SAMN37822136-rid19931313.guided.46, whole genome shotgun sequence	15586..16023	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIVS010000001.1	158305..159174	99.195	870	0						
GCA_032920545.1_PDT001951106.1_genomic.fna	Salmonella_enterica	0.521	59.18 KB	26	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIVW010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00030889 SAMN37822138-rid19928453.denovo.002, whole genome shotgun sequence	12851..13285	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIVW010000151.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00030889 SAMN37822138-rid19928453.guided.060, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032920555.1_PDT001951107.1_genomic.fna	Salmonella_enterica	0.5209	105.858 KB	15	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIVV010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00030837 SAMN37822137-rid19929873.denovo.42, whole genome shotgun sequence	37656..38093	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIVV010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00030837 SAMN37822137-rid19929873.guided.41, whole genome shotgun sequence	37697..38134	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	DAQIVV010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00030837 SAMN37822137-rid19929873.denovo.56, whole genome shotgun sequence	6483..6744																																																						avrA	DAQIVV010000011.1	39431..40300	98.966	870	0						
GCA_032920585.1_PDT001951105.1_genomic.fna	Salmonella_enterica	0.5219	100.152 KB	14	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIVX010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00031013 SAMN37822139-rid19929863.denovo.18, whole genome shotgun sequence	42609..43046	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIVX010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00031013 SAMN37822139-rid19929863.guided.58, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIVX010000015.1	95115..95984	99.195	870	0						
GCA_032920605.1_PDT001951100.1_genomic.fna	Salmonella_enterica	0.5203	97.919 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIWB010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021165 SAMN37821946-rid19929833.denovo.19, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIWB010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021165 SAMN37821946-rid19929833.guided.37, whole genome shotgun sequence	15505..15939	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032920625.1_PDT001951104.1_genomic.fna	Salmonella_enterica	0.5212	99.054 KB	16	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_728	3771	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_728	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIVY010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031111 SAMN37822140-rid19931303.denovo.43, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIVY010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031111 SAMN37822140-rid19931303.guided.42, whole genome shotgun sequence	37698..38135	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQIVY010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031111 SAMN37822140-rid19931303.denovo.23, whole genome shotgun sequence	68874..69135																																																						avrA	DAQIVY010000006.1	93997..94866	98.966	870	0						
GCA_032920645.1_PDT001951101.1_genomic.fna	Salmonella_enterica	0.5221	124.338 KB	13	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIWA010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00031360 SAMN37822143-rid19928443.denovo.24, whole genome shotgun sequence	25626..26063	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIWA010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00031360 SAMN37822143-rid19928443.guided.51, whole genome shotgun sequence	15735..16172	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIWA010000012.1	95115..95984	99.195	870	0						
GCA_032920665.1_PDT001951102.1_genomic.fna	Salmonella_enterica	0.5198	101.945 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIVZ010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00031321 SAMN37822142-rid19929843.denovo.19, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIVZ010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00031321 SAMN37822142-rid19929843.guided.42, whole genome shotgun sequence	14163..14597	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032920685.1_PDT001951097.1_genomic.fna	Salmonella_enterica	0.5211	57.328 KB	29	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIWD010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00031684 SAMN37822145-rid19929823.denovo.018, whole genome shotgun sequence	12877..13311	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIWD010000156.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00031684 SAMN37822145-rid19929823.guided.085, whole genome shotgun sequence	9308..9742	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQIWD010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00031684 SAMN37822145-rid19929823.denovo.006, whole genome shotgun sequence	7624..8498																																																																	
GCA_032920705.1_PDT001951098.1_genomic.fna	Salmonella_enterica	0.5209	89.242 KB	21	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIWC010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031380 SAMN37822144-rid19931283.denovo.003, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIWC010000127.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031380 SAMN37822144-rid19931283.guided.059, whole genome shotgun sequence	31107..31544	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	DAQIWC010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031380 SAMN37822144-rid19931283.denovo.027, whole genome shotgun sequence	43515..43776																																																						avrA	DAQIWC010000007.1	39431..40299	98.851	870	0						
GCA_032920725.1_PDT001951093.1_genomic.fna	Salmonella_enterica	0.521	94.029 KB	20	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIWE010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031905 SAMN37822149-rid19929803.denovo.005, whole genome shotgun sequence	122..559	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIWE010000119.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031905 SAMN37822149-rid19929803.guided.054, whole genome shotgun sequence	30602..31039	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	DAQIWE010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031905 SAMN37822149-rid19929803.denovo.062, whole genome shotgun sequence	6874..7135																																																						avrA	DAQIWE010000025.1	39431..40299	98.851	870	0						
GCA_032920745.1_PDT001951091.1_genomic.fna	Salmonella_enterica	0.5209	104.982 KB	18	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIWF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031907 SAMN37822151-rid19928423.denovo.001, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIWF010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031907 SAMN37822151-rid19928423.guided.044, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	DAQIWF010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031907 SAMN37822151-rid19928423.denovo.055, whole genome shotgun sequence	6874..7135																																																						avrA	DAQIWF010000016.1	39405..40273	98.851	870	0						
GCA_032920765.1_PDT001951089.1_genomic.fna	Salmonella_enterica	0.5221	107.066 KB	12	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIWG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00032091 SAMN37822153-rid19931263.denovo.01, whole genome shotgun sequence	149861..150298	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIWG010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00032091 SAMN37822153-rid19931263.guided.44, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIWG010000022.1	43558..44427	99.195	870	0						
GCA_032920785.1_PDT001951087.1_genomic.fna	Salmonella_enterica	0.5219	133.193 KB	12	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIWI010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00032123 SAMN37822154-rid19929773.denovo.04, whole genome shotgun sequence	84038..84475	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIWI010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00032123 SAMN37822154-rid19929773.guided.20, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIWI010000010.1	95115..95984	99.195	870	0						
GCA_032920805.1_PDT001951088.1_genomic.fna	Salmonella_enterica	0.5205	114.486 KB	15	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIWH010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00021963 SAMN37821965-rid19931253.denovo.40, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIWH010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00021963 SAMN37821965-rid19931253.guided.39, whole genome shotgun sequence	37698..38135	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	DAQIWH010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00021963 SAMN37821965-rid19931253.denovo.56, whole genome shotgun sequence	11553..11814																																																						avrA	DAQIWH010000013.1	60548..61417	98.966	870	0						
GCA_032920825.1_PDT001951085.1_genomic.fna	Salmonella_enterica	0.5219	140.219 KB	11	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIWJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00032196 SAMN37822156-rid19929763.denovo.01, whole genome shotgun sequence	150082..150519	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIWJ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00032196 SAMN37822156-rid19929763.guided.34, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIWJ010000007.1	95115..95984	99.195	870	0						
GCA_032920845.1_PDT001951084.1_genomic.fna	Salmonella_enterica	0.5228	71.595 KB	23	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIWK010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00032229 SAMN37822157-rid19931243.denovo.018, whole genome shotgun sequence	17266..17703	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIWK010000133.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00032229 SAMN37822157-rid19931243.guided.056, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIWK010000011.1	95115..95984	99.195	870	0						
GCA_032920865.1_PDT001951082.1_genomic.fna	Salmonella_enterica	0.5221	237.82 KB	7	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncQ1	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIWM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Uganda isolate AUSMDU00032318 SAMN37822159-rid19928403.denovo.01, whole genome shotgun sequence	431023..431460	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIWM010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Uganda isolate AUSMDU00032318 SAMN37822159-rid19928403.guided.25, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncQ1	100	796 / 796	DAQIWM010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Uganda isolate AUSMDU00032318 SAMN37822159-rid19928403.denovo.34, whole genome shotgun sequence	292..1087																																																						avrA	DAQIWM010000006.1	165119..165987	99.655	869	0						
GCA_032920885.1_PDT001951080.1_genomic.fna	Salmonella_enterica	0.5216	189.932 KB	9	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIWL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00037977 SAMN37822219-rid19928383.denovo.01, whole genome shotgun sequence	150070..150507	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIWL010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00037977 SAMN37822219-rid19928383.guided.27, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIWL010000014.1	95115..95984	99.195	870	0						
GCA_032920905.1_PDT001951077.1_genomic.fna	Salmonella_enterica	0.5217	243.311 KB	7	aroC_147,dnaN_13,hemD_15,hisD_123,purE_140,sucA_7,thrA_17	466	3,10:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_140	sucA	100	100	sucA_7	thrA	100	100	thrA_17	3,10	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Zanzibar		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIWO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00038009 SAMN37822222-rid19929733.denovo.01, whole genome shotgun sequence	175312..175749	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIWO010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00038009 SAMN37822222-rid19929733.guided.17, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIWO010000007.1	148277..149145	99.655	869	0						
GCA_032920925.1_PDT001951079.1_genomic.fna	Salmonella_enterica	0.5213	104.741 KB	16	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIWN010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00037982 SAMN37822220-rid19931233.denovo.002, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIWN010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00037982 SAMN37822220-rid19931233.guided.039, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	DAQIWN010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00037982 SAMN37822220-rid19931233.denovo.038, whole genome shotgun sequence	25532..25793																																																						avrA	DAQIWN010000006.1	93997..94865	98.851	870	0						
GCA_032920945.1_PDT001951096.1_genomic.fna	Salmonella_enterica	0.5205	191.036 KB	8	aroC_6,dnaN_7,hemD_10,hisD_10,purE_2,sucA_10,thrA_14	359	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_2	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIWP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00031787 SAMN37822146-rid19928433.denovo.01, whole genome shotgun sequence	138783..139220	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIWP010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00031787 SAMN37822146-rid19928433.guided.30, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIWP010000009.1	95115..95984	99.31	870	0						
GCA_032920965.1_PDT001951095.1_genomic.fna	Salmonella_enterica	0.521	100.275 KB	19	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIWR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031791 SAMN37822147-rid19929813.denovo.001, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIWR010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031791 SAMN37822147-rid19929813.guided.044, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	DAQIWR010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031791 SAMN37822147-rid19929813.denovo.038, whole genome shotgun sequence	43515..43776																																																						avrA	DAQIWR010000010.1	60548..61416	98.851	870	0						
GCA_032920985.1_PDT001951092.1_genomic.fna	Salmonella_enterica	0.521	104.441 KB	18	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIWQ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031906 SAMN37822150-rid19929793.denovo.006, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIWQ010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031906 SAMN37822150-rid19929793.guided.043, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	DAQIWQ010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00031906 SAMN37822150-rid19929793.denovo.057, whole genome shotgun sequence	6874..7135																																																						avrA	DAQIWQ010000003.1	93997..94865	98.851	870	0						
GCA_032921005.1_PDT001951081.1_genomic.fna	Salmonella_enterica	0.5222	319.17 KB	5	aroC_2,dnaN_4,hemD_40,hisD_43,purE_481,sucA_2,thrA_425	2125	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_4	hemD	100	100	hemD_40	hisD	100	100	hisD_43	purE	100	100	purE_481	sucA	100	100	sucA_2	thrA	100	100	thrA_425	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIWS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00032364 SAMN37822160-rid19928393.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIWS010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00032364 SAMN37822160-rid19928393.guided.17, whole genome shotgun sequence	44294..44731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIWS010000010.1	141990..142859	99.77	870	0						
GCA_032921025.1_PDT001951075.1_genomic.fna	Salmonella_enterica	0.5213	94.033 KB	17	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIWU010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00022116 SAMN37821972-rid19929723.denovo.002, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIWU010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00022116 SAMN37821972-rid19929723.guided.081, whole genome shotgun sequence	2186..2623	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	DAQIWU010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00022116 SAMN37821972-rid19929723.denovo.032, whole genome shotgun sequence	43515..43776																																																						avrA	DAQIWU010000003.1	39431..40299	98.851	870	0						
GCA_032921045.1_PDT001951078.1_genomic.fna	Salmonella_enterica	0.5226	140.665 KB	12	aroC_101,dnaN_64,hemD_25,hisD_163,purE_84,sucA_6,thrA_101	523	9:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_101	dnaN	100	100	dnaN_64	hemD	100	100	hemD_25	hisD	100	100	hisD_163	purE	100	100	purE_84	sucA	100	100	sucA_6	thrA	100	100	thrA_101	9	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Wangata		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIWT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00037984 SAMN37822221-rid19929743.denovo.01, whole genome shotgun sequence	98..535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIWT010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00037984 SAMN37822221-rid19929743.guided.34, whole genome shotgun sequence	42416..42853	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIWT010000012.1	84211..85080	98.966	870	0						
GCA_032921065.1_PDT001951071.1_genomic.fna	Salmonella_enterica	0.5219	171.208 KB	9	aroC_147,dnaN_13,hemD_15,hisD_123,purE_140,sucA_7,thrA_17	466	3,10:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_140	sucA	100	100	sucA_7	thrA	100	100	thrA_17	3,10	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Zanzibar		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIWX010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00038377 SAMN37822227-rid19928363.denovo.08, whole genome shotgun sequence	52420..52857	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIWX010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00038377 SAMN37822227-rid19928363.guided.37, whole genome shotgun sequence	9864..10301	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIWX010000006.1	148277..149144	99.54	869	0						
GCA_032921085.1_PDT001951072.1_genomic.fna	Salmonella_enterica	0.5215	81.053 KB	19	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIWV010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00038325 SAMN37822226-rid19931213.denovo.019, whole genome shotgun sequence	80497..80934	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIWV010000146.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00038325 SAMN37822226-rid19931213.guided.043, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQIWV010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00038325 SAMN37822226-rid19931213.denovo.062, whole genome shotgun sequence	6639..6900																																																						avrA	DAQIWV010000009.1	39431..40300	98.851	870	0						
GCA_032921105.1_PDT001951070.1_genomic.fna	Salmonella_enterica	0.5219	187.518 KB	8	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIWW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00038381 SAMN37822228-rid19928353.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIWW010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00038381 SAMN37822228-rid19928353.guided.32, whole genome shotgun sequence	14053..14490	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIWW010000010.1	94851..95720	99.195	870	0						
GCA_032921145.1_PDT001951069.1_genomic.fna	Salmonella_enterica	0.523	156.994 KB	10	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIWY010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00038676 SAMN37822230-rid19931203.denovo.04, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIWY010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00038676 SAMN37822230-rid19931203.guided.43, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIWY010000009.1	94851..95720	99.195	870	0						
GCA_032921165.1_PDT001951067.1_genomic.fna	Salmonella_enterica	0.5217	398.035 KB	5	aroC_147,dnaN_13,hemD_15,hisD_123,purE_140,sucA_7,thrA_17	466	3,10:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_140	sucA	100	100	sucA_7	thrA	100	100	thrA_17	3,10	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Zanzibar		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIXA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00038910 SAMN37822232-rid19931193.denovo.01, whole genome shotgun sequence	376892..377329	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIXA010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00038910 SAMN37822232-rid19931193.guided.11, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIXA010000004.1	148277..149145	99.655	869	0						
GCA_032921185.1_PDT001951068.1_genomic.fna	Salmonella_enterica	0.5218	140.224 KB	12	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIWZ010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00038788 SAMN37822231-rid19929703.denovo.04, whole genome shotgun sequence	76152..76589	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIWZ010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00038788 SAMN37822231-rid19929703.guided.27, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIWZ010000008.1	95115..95984	99.195	870	0						
GCA_032921205.1_PDT001951064.1_genomic.fna	Salmonella_enterica	0.5207	104.98 KB	15	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIXC010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00038929 SAMN37822234-rid19931183.denovo.003, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIXC010000128.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00038929 SAMN37822234-rid19931183.guided.038, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQIXC010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00038929 SAMN37822234-rid19931183.denovo.033, whole genome shotgun sequence	43514..43775																																																						avrA	DAQIXC010000010.1	39431..40300	98.851	870	0						
GCA_032921225.1_PDT001951066.1_genomic.fna	Salmonella_enterica	0.5213	250.981 KB	6	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIXB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00038916 SAMN37822233-rid19928343.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIXB010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00038916 SAMN37822233-rid19928343.guided.14, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIXB010000010.1	95115..95984	99.195	870	0						
GCA_032921245.1_PDT001951063.1_genomic.fna	Salmonella_enterica	0.5212	86.829 KB	19	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIXD010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00038931 SAMN37822235-rid19929683.denovo.028, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIXD010000124.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00038931 SAMN37822235-rid19929683.guided.082, whole genome shotgun sequence	7444..7881	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQIXD010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00038931 SAMN37822235-rid19929683.denovo.093, whole genome shotgun sequence	357..487	enterobacteriales	IncFII(S)	100	262 / 262	DAQIXD010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00038931 SAMN37822235-rid19929683.denovo.044, whole genome shotgun sequence	25640..25901																																																avrA	DAQIXD010000004.1	93997..94866	98.851	870	0						
GCA_032921265.1_PDT001951062.1_genomic.fna	Salmonella_enterica	0.5208	107.189 KB	14	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIXF010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00038934 SAMN37822236-rid19931173.denovo.44, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIXF010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00038934 SAMN37822236-rid19931173.guided.56, whole genome shotgun sequence	24984..25421	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQIXF010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00038934 SAMN37822236-rid19931173.denovo.74, whole genome shotgun sequence	1253..1383	enterobacteriales	IncFII(S)	100	262 / 262	DAQIXF010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00038934 SAMN37822236-rid19931173.denovo.33, whole genome shotgun sequence	43515..43776																																																avrA	DAQIXF010000035.1	39431..40301	98.852	871	0						
GCA_032921285.1_PDT001951058.1_genomic.fna	Salmonella_enterica	0.5215	197.121 KB	7	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIXG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00039066 SAMN37822240-rid19929673.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIXG010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00039066 SAMN37822240-rid19929673.guided.20, whole genome shotgun sequence	9842..10279	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIXG010000012.1	95115..95984	99.195	870	0						
GCA_032921305.1_PDT001951061.1_genomic.fna	Salmonella_enterica	0.522	197.133 KB	7	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIXE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00038936 SAMN37822237-rid19928333.denovo.01, whole genome shotgun sequence	138757..139194	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIXE010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00038936 SAMN37822237-rid19928333.guided.35, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIXE010000009.1	95115..95984	99.195	870	0						
GCA_032921325.1_PDT001951056.1_genomic.fna	Salmonella_enterica	0.5226	201.041 KB	8	aroC_101,dnaN_64,hemD_25,hisD_163,purE_84,sucA_6,thrA_101	523	9:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_101	dnaN	100	100	dnaN_64	hemD	100	100	hemD_25	hisD	100	100	hisD_163	purE	100	100	purE_84	sucA	100	100	sucA_6	thrA	100	100	thrA_101	9	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Wangata		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIXH010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00039454 SAMN37822242-rid19928313.denovo.02, whole genome shotgun sequence	98..535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIXH010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00039454 SAMN37822242-rid19928313.guided.28, whole genome shotgun sequence	42416..42853	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIXH010000017.1	39430..40299	98.966	870	0						
GCA_032921345.1_PDT001951057.1_genomic.fna	Salmonella_enterica	0.5226	170.763 KB	9	aroC_101,dnaN_64,hemD_25,hisD_163,purE_84,sucA_6,thrA_101	523	9:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_101	dnaN	100	100	dnaN_64	hemD	100	100	hemD_25	hisD	100	100	hisD_163	purE	100	100	purE_84	sucA	100	100	sucA_6	thrA	100	100	thrA_101	9	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Wangata		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIXI010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00039125 SAMN37822241-rid19931153.denovo.02, whole genome shotgun sequence	98..535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIXI010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00039125 SAMN37822241-rid19931153.guided.28, whole genome shotgun sequence	42416..42853	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIXI010000013.1	84211..85080	98.966	870	0						
GCA_032921365.1_PDT001951055.1_genomic.fna	Salmonella_enterica	0.5201	114.537 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIXJ010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00039804 SAMN37822243-rid19929663.denovo.08, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIXJ010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00039804 SAMN37822243-rid19929663.guided.38, whole genome shotgun sequence	14193..14627	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032921385.1_PDT001951052.1_genomic.fna	Salmonella_enterica	0.5215	204.572 KB	7	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIXL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040029 SAMN37822244-rid19931133.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIXL010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040029 SAMN37822244-rid19931133.guided.27, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIXL010000012.1	95115..95984	99.195	870	0						
GCA_032921405.1_PDT001951053.1_genomic.fna	Salmonella_enterica	0.5208	73.178 KB	20	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIXK010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00022233 SAMN37821974-rid19929653.denovo.022, whole genome shotgun sequence	12857..13291	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIXK010000121.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00022233 SAMN37821974-rid19929653.guided.054, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032921425.1_PDT001951049.1_genomic.fna	Salmonella_enterica	0.5221	116.899 KB	11	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIXN010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00045491 SAMN37822334-rid19931123.denovo.03, whole genome shotgun sequence	138796..139233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIXN010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00045491 SAMN37822334-rid19931123.guided.34, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIXN010000008.1	95115..95984	99.195	870	0						
GCA_032921445.1_PDT001951050.1_genomic.fna	Salmonella_enterica	0.5214	190.047 KB	8	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIXM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040053 SAMN37822246-rid19928293.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIXM010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040053 SAMN37822246-rid19928293.guided.20, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	97.37	152 / 154	DAQIXM010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040053 SAMN37822246-rid19928293.denovo.40, whole genome shotgun sequence	643..794																																																						avrA	DAQIXM010000006.1	124214..125083	99.195	870	0						
GCA_032921465.1_PDT001951045.1_genomic.fna	Salmonella_enterica	0.5232	51.98 KB	28	aroC_101,dnaN_64,hemD_25,hisD_163,purE_84,sucA_6,thrA_101	523	9:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_101	dnaN	100	100	dnaN_64	hemD	100	100	hemD_25	hisD	100	100	hisD_163	purE	100	100	purE_84	sucA	100	100	sucA_6	thrA	100	100	thrA_101	9	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Wangata		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIXP010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045628 SAMN37822338-rid19929633.denovo.092, whole genome shotgun sequence	98..535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIXP010000163.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045628 SAMN37822338-rid19929633.guided.129, whole genome shotgun sequence	1981..2418	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIXP010000042.1	39430..40299	98.966	870	0						
GCA_032921485.1_PDT001951046.1_genomic.fna	Salmonella_enterica	0.5216	45.464 KB	35	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIXQ010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00045589 SAMN37822337-rid19928283.denovo.067, whole genome shotgun sequence	12860..13294	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIXQ010000216.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00045589 SAMN37822337-rid19928283.guided.098, whole genome shotgun sequence	14172..14606	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032921495.1_PDT001951048.1_genomic.fna	Salmonella_enterica	0.5202	102.896 KB	18	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIXO010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00045502 SAMN37822335-rid19929643.denovo.010, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIXO010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00045502 SAMN37822335-rid19929643.guided.039, whole genome shotgun sequence	14250..14684	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032921525.1_PDT001951043.1_genomic.fna	Salmonella_enterica	0.5226	114.138 KB	13	aroC_101,dnaN_64,hemD_25,hisD_163,purE_84,sucA_6,thrA_101	523	9:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_101	dnaN	100	100	dnaN_64	hemD	100	100	hemD_25	hisD	100	100	hisD_163	purE	100	100	purE_84	sucA	100	100	sucA_6	thrA	100	100	thrA_101	9	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Wangata		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIXR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045709 SAMN37822340-rid19931093.denovo.01, whole genome shotgun sequence	98..535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIXR010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045709 SAMN37822340-rid19931093.guided.47, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIXR010000017.1	39430..40299	98.966	870	0						
GCA_032921545.1_PDT001951041.1_genomic.fna	Salmonella_enterica	0.5229	58.339 KB	25	aroC_101,dnaN_64,hemD_25,hisD_163,purE_84,sucA_6,thrA_101	523	9:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_101	dnaN	100	100	dnaN_64	hemD	100	100	hemD_25	hisD	100	100	hisD_163	purE	100	100	purE_84	sucA	100	100	sucA_6	thrA	100	100	thrA_101	9	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Wangata		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIXT010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045767 SAMN37822342-rid19928273.denovo.033, whole genome shotgun sequence	98..535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIXT010000144.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045767 SAMN37822342-rid19928273.guided.098, whole genome shotgun sequence	9823..10260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	100	193 / 193	DAQIXT010000118.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045767 SAMN37822342-rid19928273.denovo.121, whole genome shotgun sequence	192..384																																																						avrA	DAQIXT010000011.1	39534..40403	98.966	870	0						
GCA_032921565.1_PDT001951042.1_genomic.fna	Salmonella_enterica	0.5227	97.233 KB	16	aroC_101,dnaN_64,hemD_25,hisD_163,purE_84,sucA_6,thrA_101	523	9:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_101	dnaN	100	100	dnaN_64	hemD	100	100	hemD_25	hisD	100	100	hisD_163	purE	100	100	purE_84	sucA	100	100	sucA_6	thrA	100	100	thrA_101	9	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Wangata		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIXS010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045730 SAMN37822341-rid19931083.denovo.06, whole genome shotgun sequence	98..535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIXS010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045730 SAMN37822341-rid19931083.guided.40, whole genome shotgun sequence	42416..42853	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIXS010000017.1	39430..40299	98.966	870	0						
GCA_032921585.1_PDT001951040.1_genomic.fna	Salmonella_enterica	0.5231	56.077 KB	28	aroC_101,dnaN_64,hemD_25,hisD_163,purE_84,sucA_6,thrA_101	523	9:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_101	dnaN	100	100	dnaN_64	hemD	100	100	hemD_25	hisD	100	100	hisD_163	purE	100	100	purE_84	sucA	100	100	sucA_6	thrA	100	100	thrA_101	9	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Wangata		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIXV010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045769 SAMN37822343-rid19929623.denovo.029, whole genome shotgun sequence	98..535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIXV010000154.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045769 SAMN37822343-rid19929623.guided.042, whole genome shotgun sequence	42416..42853	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	100	193 / 193	DAQIXV010000129.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045769 SAMN37822343-rid19929623.denovo.132, whole genome shotgun sequence	192..384																																																						avrA	DAQIXV010000004.1	81460..82329	98.966	870	0						
GCA_032921605.1_PDT001951039.1_genomic.fna	Salmonella_enterica	0.5219	279.891 KB	6	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIXU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00021234 SAMN37821948-rid19928263.denovo.01, whole genome shotgun sequence	150056..150493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIXU010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00021234 SAMN37821948-rid19928263.guided.28, whole genome shotgun sequence	5264..5701	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIXU010000007.1	149619..150488	99.195	870	0						
GCA_032921625.1_PDT001951038.1_genomic.fna	Salmonella_enterica	0.5229	50.94 KB	28	aroC_101,dnaN_64,hemD_25,hisD_163,purE_84,sucA_6,thrA_101	523	9:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_101	dnaN	100	100	dnaN_64	hemD	100	100	hemD_25	hisD	100	100	hisD_163	purE	100	100	purE_84	sucA	100	100	sucA_6	thrA	100	100	thrA_101	9	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Wangata		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIXW010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045853 SAMN37822344-rid19929613.denovo.090, whole genome shotgun sequence	98..535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIXW010000170.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045853 SAMN37822344-rid19929613.guided.044, whole genome shotgun sequence	42416..42853	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQIXW010000116.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045853 SAMN37822344-rid19929613.denovo.119, whole genome shotgun sequence	3866..4007																																																						avrA	DAQIXW010000013.1	81460..82329	98.966	870	0						
GCA_032921645.1_PDT001951036.1_genomic.fna	Salmonella_enterica	0.523	65.763 KB	26	aroC_101,dnaN_64,hemD_25,hisD_163,purE_84,sucA_6,thrA_101	523	9:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_101	dnaN	100	100	dnaN_64	hemD	100	100	hemD_25	hisD	100	100	hisD_163	purE	100	100	purE_84	sucA	100	100	sucA_6	thrA	100	100	thrA_101	9	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Wangata		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIXY010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045912 SAMN37822346-rid19928253.denovo.036, whole genome shotgun sequence	98..535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIXY010000148.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045912 SAMN37822346-rid19928253.guided.102, whole genome shotgun sequence	7381..7818	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	100	193 / 193	DAQIXY010000120.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045912 SAMN37822346-rid19928253.denovo.123, whole genome shotgun sequence	192..384																																																						avrA	DAQIXY010000003.1	81871..82740	98.966	870	0						
GCA_032921665.1_PDT001951035.1_genomic.fna	Salmonella_enterica	0.5234	64.751 KB	22	aroC_101,dnaN_64,hemD_25,hisD_163,purE_84,sucA_6,thrA_101	523	9:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_101	dnaN	100	100	dnaN_64	hemD	100	100	hemD_25	hisD	100	100	hisD_163	purE	100	100	purE_84	sucA	100	100	sucA_6	thrA	100	100	thrA_101	9	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Wangata		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIXZ010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00046016 SAMN37822347-rid19929603.denovo.086, whole genome shotgun sequence	98..535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIXZ010000152.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00046016 SAMN37822347-rid19929603.guided.085, whole genome shotgun sequence	15468..15905	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIXZ010000010.1	39528..40397	98.966	870	0						
GCA_032921685.1_PDT001951037.1_genomic.fna	Salmonella_enterica	0.523	90.861 KB	19	aroC_101,dnaN_64,hemD_25,hisD_163,purE_84,sucA_6,thrA_101	523	9:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_101	dnaN	100	100	dnaN_64	hemD	100	100	hemD_25	hisD	100	100	hisD_163	purE	100	100	purE_84	sucA	100	100	sucA_6	thrA	100	100	thrA_101	9	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Wangata		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIXX010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045881 SAMN37822345-rid19931073.denovo.031, whole genome shotgun sequence	98..535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIXX010000128.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00045881 SAMN37822345-rid19931073.guided.042, whole genome shotgun sequence	42416..42853	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIXX010000005.1	83800..84669	98.966	870	0						
GCA_032921705.1_PDT001951029.1_genomic.fna	Salmonella_enterica	0.5214	66.275 KB	23	aroC_127,dnaN_46,hemD_49,hisD_170,purE_149,sucA_9,thrA_41	499	6,14:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_127	dnaN	100	100	dnaN_46	hemD	100	100	hemD_49	hisD	100	100	hisD_170	purE	100	100	purE_149	sucA	100	100	sucA_9	thrA	100	100	thrA_41	6,14	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Warragul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQIYB010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Warragul isolate AUSMDU00046520 SAMN37822353-rid19928223.denovo.025, whole genome shotgun sequence	12498..12935	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQIYB010000171.1 TPA_asm: Salmonella enterica subsp. enterica serovar Warragul isolate AUSMDU00046520 SAMN37822353-rid19928223.guided.093, whole genome shotgun sequence	7473..7910	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIYB010000007.1	96244..96977	98.91	734	0	avrA	DAQIYB010000126.1	1..137	97.81	137	6.5e-66
GCA_032921725.1_PDT001951033.1_genomic.fna	Salmonella_enterica	0.5224	92.027 KB	19	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIYA010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00046057 SAMN37822349-rid19931063.denovo.34, whole genome shotgun sequence	1570..2007	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIYA010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00046057 SAMN37822349-rid19931063.guided.52, whole genome shotgun sequence	9100..9537	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIYA010000016.1	60935..61804	99.195	870	0						
GCA_032921745.1_PDT001951026.1_genomic.fna	Salmonella_enterica	0.5223	124.367 KB	11	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIYC010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00046740 SAMN37822355-rid19928213.denovo.02, whole genome shotgun sequence	138755..139192	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIYC010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00046740 SAMN37822355-rid19928213.guided.49, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIYC010000010.1	95121..95990	99.195	870	0						
GCA_032921755.1_PDT001951027.1_genomic.fna	Salmonella_enterica	0.5222	83.483 KB	17	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIYD010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00046739 SAMN37822354-rid19931043.denovo.006, whole genome shotgun sequence	48229..48666	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIYD010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00046739 SAMN37822354-rid19931043.guided.071, whole genome shotgun sequence	14161..14598	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIYD010000015.1	83703..84572	99.195	870	0						
GCA_032921785.1_PDT001951022.1_genomic.fna	Salmonella_enterica	0.5221	124.531 KB	13	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIYE010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00047085 SAMN37822359-rid19931023.denovo.03, whole genome shotgun sequence	84043..84480	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIYE010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00047085 SAMN37822359-rid19931023.guided.51, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIYE010000005.1	158467..159336	99.195	870	0						
GCA_032921805.1_PDT001951017.1_genomic.fna	Salmonella_enterica	0.5205	82.633 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA7,dfrA7	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIYF010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021117 SAMN37821945-rid19931013.denovo.015, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIYF010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021117 SAMN37821945-rid19931013.denovo.082, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIYF010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021117 SAMN37821945-rid19931013.denovo.082, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQIYF010000105.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021117 SAMN37821945-rid19931013.guided.039, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQIYF010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021117 SAMN37821945-rid19931013.guided.081, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQIYF010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021117 SAMN37821945-rid19931013.guided.081, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQIYF010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021117 SAMN37821945-rid19931013.denovo.097, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQIYF010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021117 SAMN37821945-rid19931013.guided.096, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQIYF010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021117 SAMN37821945-rid19931013.denovo.066, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQIYF010000107.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021117 SAMN37821945-rid19931013.guided.075, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQIYF010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021117 SAMN37821945-rid19931013.denovo.066, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQIYF010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021117 SAMN37821945-rid19931013.denovo.082, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQIYF010000107.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021117 SAMN37821945-rid19931013.guided.075, whole genome shotgun sequence	7991..8830	Sulfamethoxazole	U12338	sul2	100	816/816	DAQIYF010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021117 SAMN37821945-rid19931013.guided.081, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQIYF010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021117 SAMN37821945-rid19931013.denovo.066, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQIYF010000107.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021117 SAMN37821945-rid19931013.guided.075, whole genome shotgun sequence	6947..7420	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032921825.1_PDT001951016.1_genomic.fna	Salmonella_enterica	0.5206	98.091 KB	17	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIYG010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021427 SAMN37821954-rid19928173.denovo.07, whole genome shotgun sequence	12854..13288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIYG010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021427 SAMN37821954-rid19928173.guided.70, whole genome shotgun sequence	22..456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQIYG010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021427 SAMN37821954-rid19928173.denovo.16, whole genome shotgun sequence	23493..24367																																																																	
GCA_032921845.1_PDT001951015.1_genomic.fna	Salmonella_enterica	0.5215	139.315 KB	10	aroC_61,dnaN_294,hemD_25,hisD_194,purE_136,sucA_45,thrA_126	1419	41:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_294	hemD	100	100	hemD_25	hisD	100	100	hisD_194	purE	100	100	purE_136	sucA	100	100	sucA_45	thrA	100	100	thrA_126	41	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Waycross		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIYH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Waycross isolate AUSMDU00025340 SAMN37822044-rid19929543.denovo.01, whole genome shotgun sequence	12525..12962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQIYH010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Waycross isolate AUSMDU00025340 SAMN37822044-rid19929543.guided.48, whole genome shotgun sequence	9267..9704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIYH010000005.1	120025..120894	99.425	870	0						
GCA_032921885.1_PDT001951013.1_genomic.fna	Salmonella_enterica	0.5229	88.844 KB	17	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIYJ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00027022 SAMN37822075-rid19931003.denovo.31, whole genome shotgun sequence	15446..15883	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIYJ010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00027022 SAMN37822075-rid19931003.guided.66, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIYJ010000011.1	95115..95984	99.31	870	0						
GCA_032921905.1_PDT001951010.1_genomic.fna	Salmonella_enterica	0.5225	137.183 KB	11	aroC_118,dnaN_107,hemD_8,hisD_51,purE_2,sucA_117,thrA_16	319	-:z29:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_118	dnaN	100	100	dnaN_107	hemD	100	100	hemD_8	hisD	100	100	hisD_51	purE	100	100	purE_2	sucA	100	100	sucA_117	thrA	100	100	thrA_16	-	z29	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z29:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIYL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Tennessee isolate AUSMDU00027082 SAMN37822078-rid19929533.denovo.01, whole genome shotgun sequence	250596..251033	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIYL010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Tennessee isolate AUSMDU00027082 SAMN37822078-rid19929533.guided.38, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIYL010000033.1	39591..40460	99.655	870	0						
GCA_032921925.1_PDT001951014.1_genomic.fna	Salmonella_enterica	0.5221	162.48 KB	9	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIYI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00026990 SAMN37822074-rid19928163.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIYI010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00026990 SAMN37822074-rid19928163.guided.41, whole genome shotgun sequence	8775..9212	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIYI010000009.1	95115..95984	99.195	870	0						
GCA_032921945.1_PDT001951012.1_genomic.fna	Salmonella_enterica	0.5223	76.861 KB	20	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIYK010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00027046 SAMN37822076-rid19930993.denovo.019, whole genome shotgun sequence	17267..17704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIYK010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00027046 SAMN37822076-rid19930993.guided.067, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIYK010000011.1	95115..95984	99.195	870	0						
GCA_032921955.1_PDT001951008.1_genomic.fna	Salmonella_enterica	0.5212	81.611 KB	19	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIYM010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00027141 SAMN37822080-rid19929523.denovo.005, whole genome shotgun sequence	121..558	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIYM010000156.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00027141 SAMN37822080-rid19929523.guided.044, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQIYM010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00027141 SAMN37822080-rid19929523.denovo.061, whole genome shotgun sequence	6639..6900																																																						avrA	DAQIYM010000040.1	43591..44460	98.851	870	0						
GCA_032921985.1_PDT001951007.1_genomic.fna	Salmonella_enterica	0.5229	113.619 KB	13	aroC_118,dnaN_107,hemD_8,hisD_51,purE_2!,purE_2!,sucA_117,thrA_16	Unknown	-:z29:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_118	dnaN	100	100	dnaN_107	hemD	100	100	hemD_8	hisD	100	100	hisD_51	purE	100	100	purE_2!	purE	100	100	purE_2!	sucA	100	100	sucA_117	-	z29	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z29:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIYN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Tennessee isolate AUSMDU00027169 SAMN37822081-rid19930973.denovo.01, whole genome shotgun sequence	379480..379917	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIYN010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Tennessee isolate AUSMDU00027169 SAMN37822081-rid19930973.guided.42, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIYN010000003.1	118643..119512	99.655	870	0						
GCA_032922005.1_PDT001951006.1_genomic.fna	Salmonella_enterica	0.5204	153.375 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIYO010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00027245 SAMN37822082-rid19929513.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIYO010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00027245 SAMN37822082-rid19929513.guided.28, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032922025.1_PDT001951001.1_genomic.fna	Salmonella_enterica	0.5224	118.883 KB	14	aroC_147,dnaN_13,hemD_15,hisD_123,purE_140,sucA_7,thrA_17	466	9,46:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_140	sucA	100	100	sucA_7	thrA	100	100	thrA_17	9,46	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Cochin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIYR010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00027536 SAMN37822086-rid19929493.denovo.09, whole genome shotgun sequence	52395..52832	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIYR010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00027536 SAMN37822086-rid19929493.guided.47, whole genome shotgun sequence	14098..14535	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIYR010000014.1	115768..116636	99.655	869	0						
GCA_032922045.1_PDT001951003.1_genomic.fna	Salmonella_enterica	0.5204	107.988 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIYP010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00027306 SAMN37822084-rid19929503.denovo.004, whole genome shotgun sequence	24173..24607	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIYP010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00027306 SAMN37822084-rid19929503.guided.043, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032922065.1_PDT001951002.1_genomic.fna	Salmonella_enterica	0.5222	76.865 KB	19	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIYQ010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00027534 SAMN37822085-rid19930963.denovo.005, whole genome shotgun sequence	17218..17655	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIYQ010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00027534 SAMN37822085-rid19930963.guided.050, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIYQ010000009.1	95115..95984	99.195	870	0						
GCA_032922085.1_PDT001951000.1_genomic.fna	Salmonella_enterica	0.522	114.053 KB	13	aroC_118,dnaN_107,hemD_8,hisD_51,purE_2,sucA_117,thrA_16	319	-:z29:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_118	dnaN	100	100	dnaN_107	hemD	100	100	hemD_8	hisD	100	100	hisD_51	purE	100	100	purE_2	sucA	100	100	sucA_117	thrA	100	100	thrA_16	-	z29	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z29:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIYS010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Tennessee isolate AUSMDU00027559 SAMN37822087-rid19929483.denovo.04, whole genome shotgun sequence	71076..71513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIYS010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Tennessee isolate AUSMDU00027559 SAMN37822087-rid19929483.guided.32, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIYS010000018.1	97034..97903	99.655	870	0						
GCA_032922105.1_PDT001950996.1_genomic.fna	Salmonella_enterica	0.5218	171.509 KB	9	aroC_61,dnaN_294,hemD_25,hisD_194,purE_136,sucA_45,thrA_126	1419	41:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_294	hemD	100	100	hemD_25	hisD	100	100	hisD_194	purE	100	100	purE_136	sucA	100	100	sucA_45	thrA	100	100	thrA_126	41	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Waycross		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIYU010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Waycross isolate AUSMDU00027794 SAMN37822092-rid19929463.denovo.07, whole genome shotgun sequence	153327..153764	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQIYU010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Waycross isolate AUSMDU00027794 SAMN37822092-rid19929463.guided.34, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIYU010000005.1	145482..146351	99.425	870	0						
GCA_032922125.1_PDT001950997.1_genomic.fna	Salmonella_enterica	0.5211	149.987 KB	9	aroC_75,dnaN_67,hemD_10,hisD_17,purE_15,sucA_9,thrA_66	197	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_75	dnaN	100	100	dnaN_67	hemD	100	100	hemD_10	hisD	100	100	hisD_17	purE	100	100	purE_15	sucA	100	100	sucA_9	thrA	100	100	thrA_66	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQIYT010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00027793 SAMN37822091-rid19930953.denovo.10, whole genome shotgun sequence	52435..52872	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQIYT010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00027793 SAMN37822091-rid19930953.guided.44, whole genome shotgun sequence	15682..16119	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIYT010000006.1	149450..150319	99.77	870	0						
GCA_032922145.1_PDT001950992.1_genomic.fna	Salmonella_enterica	0.5215	95.257 KB	19	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIYW010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00028197 SAMN37822096-rid19930943.denovo.030, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIYW010000149.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00028197 SAMN37822096-rid19930943.guided.085, whole genome shotgun sequence	10146..10583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQIYW010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00028197 SAMN37822096-rid19930943.denovo.063, whole genome shotgun sequence	6639..6900																																																						avrA	DAQIYW010000008.1	43161..44030	98.851	870	0						
GCA_032922165.1_PDT001950993.1_genomic.fna	Salmonella_enterica	0.5217	198.297 KB	8	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIYV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00027859 SAMN37822095-rid19929453.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIYV010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00027859 SAMN37822095-rid19929453.guided.29, whole genome shotgun sequence	1943..2380	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIYV010000011.1	95115..95984	99.195	870	0						
GCA_032922185.1_PDT001950991.1_genomic.fna	Salmonella_enterica	0.5223	133.311 KB	12	aroC_118,dnaN_107,hemD_8,hisD_51,purE_2,sucA_117,thrA_16	319	7:z29:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_118	dnaN	100	100	dnaN_107	hemD	100	100	hemD_8	hisD	100	100	hisD_51	purE	100	100	purE_2	sucA	100	100	sucA_117	thrA	100	100	thrA_16	7	z29	-	Salmonella enterica subspecies enterica (subspecies I)	Tennessee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQIYX010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Tennessee isolate AUSMDU00028344 SAMN37822098-rid19929443.denovo.09, whole genome shotgun sequence	20860..21297	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQIYX010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Tennessee isolate AUSMDU00028344 SAMN37822098-rid19929443.guided.42, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIYX010000004.1	118514..119383	99.655	870	0						
GCA_032922205.1_PDT001950989.1_genomic.fna	Salmonella_enterica	0.5224	119.515 KB	10	aroC_147,dnaN_13,hemD_15,hisD_123,purE_140,sucA_7,thrA_17	466	3,10:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_140	sucA	100	100	sucA_7	thrA	100	100	thrA_17	3,10	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Zanzibar		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIYZ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00028432 SAMN37822100-rid19928093.denovo.02, whole genome shotgun sequence	386692..387129	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIYZ010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00028432 SAMN37822100-rid19928093.guided.32, whole genome shotgun sequence	31163..31600	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIYZ010000005.1	148277..149144	99.54	869	0						
GCA_032922225.1_PDT001950990.1_genomic.fna	Salmonella_enterica	0.5211	92.505 KB	17	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIYY010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00028353 SAMN37822099-rid19929433.denovo.034, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIYY010000135.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00028353 SAMN37822099-rid19929433.guided.041, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQIYY010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00028353 SAMN37822099-rid19929433.denovo.035, whole genome shotgun sequence	43514..43775																																																						avrA	DAQIYY010000008.1	39431..40300	98.851	870	0						
GCA_032922245.1_PDT001950988.1_genomic.fna	Salmonella_enterica	0.5216	197.132 KB	7	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIZA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00028574 SAMN37822101-rid19929423.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIZA010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00028574 SAMN37822101-rid19929423.guided.20, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIZA010000008.1	95115..95984	99.195	870	0						
GCA_032922265.1_PDT001950987.1_genomic.fna	Salmonella_enterica	0.5211	154.196 KB	10	aroC_61,dnaN_294,hemD_25,hisD_194,purE_136,sucA_45,thrA_126	1419	41:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_61	dnaN	100	100	dnaN_294	hemD	100	100	hemD_25	hisD	100	100	hisD_194	purE	100	100	purE_136	sucA	100	100	sucA_45	thrA	100	100	thrA_126	41	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Waycross		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIZB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Waycross isolate AUSMDU00028611 SAMN37822103-rid19930933.denovo.01, whole genome shotgun sequence	12525..12962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQIZB010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Waycross isolate AUSMDU00028611 SAMN37822103-rid19930933.guided.40, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQIZB010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Waycross isolate AUSMDU00028611 SAMN37822103-rid19930933.denovo.35, whole genome shotgun sequence	22332..22473																																																						avrA	DAQIZB010000002.1	145482..146351	99.425	870	0						
GCA_032922275.1_PDT001950986.1_genomic.fna	Salmonella_enterica	0.5212	92.215 KB	17	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIZC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00035568 SAMN37822190-rid19930923.denovo.001, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIZC010000136.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00035568 SAMN37822190-rid19930923.guided.039, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQIZC010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00035568 SAMN37822190-rid19930923.denovo.033, whole genome shotgun sequence	43514..43775																																																						avrA	DAQIZC010000005.1	93997..94866	98.851	870	0						
GCA_032922305.1_PDT001950984.1_genomic.fna	Salmonella_enterica	0.5205	151.386 KB	9	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(29),IncI1-I(Alpha)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIZE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Uganda isolate AUSMDU00035781 SAMN37822192-rid19928073.denovo.01, whole genome shotgun sequence	486268..486705	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIZE010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Uganda isolate AUSMDU00035781 SAMN37822192-rid19928073.guided.41, whole genome shotgun sequence	16794..17231	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQIZE010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Uganda isolate AUSMDU00035781 SAMN37822192-rid19928073.denovo.55, whole genome shotgun sequence	1832..1944	enterobacteriales	IncFII(29)	95.38	260 / 259	DAQIZE010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Uganda isolate AUSMDU00035781 SAMN37822192-rid19928073.denovo.19, whole genome shotgun sequence	13482..13741		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQIZE010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Uganda isolate AUSMDU00035781 SAMN37822192-rid19928073.denovo.33, whole genome shotgun sequence	32315..32456																																									avrA	DAQIZE010000004.1	182170..183038	99.655	869	0						
GCA_032922325.1_PDT001950985.1_genomic.fna	Salmonella_enterica	0.522	162.499 KB	10	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col440I	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIZD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00035607 SAMN37822191-rid19928083.denovo.01, whole genome shotgun sequence	36869..37306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIZD010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00035607 SAMN37822191-rid19928083.guided.34, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col440I	93.81	113 / 114	DAQIZD010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00035607 SAMN37822191-rid19928083.denovo.45, whole genome shotgun sequence	2528..2639																																																						avrA	DAQIZD010000010.1	95115..95984	99.195	870	0						
GCA_032922345.1_PDT001950983.1_genomic.fna	Salmonella_enterica	0.5211	204.545 KB	7	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIZF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00035859 SAMN37822193-rid19929413.denovo.01, whole genome shotgun sequence	149958..150395	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIZF010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00035859 SAMN37822193-rid19929413.guided.22, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIZF010000012.1	95115..95984	99.31	870	0						
GCA_032922365.1_PDT001950981.1_genomic.fna	Salmonella_enterica	0.5212	91.828 KB	17	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIZI010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00036733 SAMN37822201-rid19929403.denovo.005, whole genome shotgun sequence	121..558	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIZI010000136.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00036733 SAMN37822201-rid19929403.guided.041, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQIZI010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00036733 SAMN37822201-rid19929403.denovo.091, whole genome shotgun sequence	1251..1381	enterobacteriales	IncFII(S)	99.62	262 / 262	DAQIZI010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00036733 SAMN37822201-rid19929403.denovo.058, whole genome shotgun sequence	6639..6900																																																avrA	DAQIZI010000010.1	39431..40300	98.851	870	0						
GCA_032922385.1_PDT001950982.1_genomic.fna	Salmonella_enterica	0.5217	191.088 KB	8	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	4	aac(6')-Iaa,aac(6')-Iaa,sul1,sul1,tet(A),tet(A),dfrA5,dfrA5	1	gyrA_p.S83Y	0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIZG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022067 SAMN37821969-rid19930913.denovo.01, whole genome shotgun sequence	138802..139239	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIZG010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022067 SAMN37821969-rid19930913.guided.38, whole genome shotgun sequence	10424..10861	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	DAQIZG010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022067 SAMN37821969-rid19930913.denovo.36, whole genome shotgun sequence	18901..19740	Sulfamethoxazole	X15024	sul1	100	840/840	DAQIZG010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022067 SAMN37821969-rid19930913.guided.49, whole genome shotgun sequence	3152..3991	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	DAQIZG010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022067 SAMN37821969-rid19930913.denovo.39, whole genome shotgun sequence	2104..3303	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQIZG010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022067 SAMN37821969-rid19930913.guided.40, whole genome shotgun sequence	2145..3344	Doxycycline, Tetracycline	AJ517790	dfrA5	100	474/474	DAQIZG010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022067 SAMN37821969-rid19930913.denovo.36, whole genome shotgun sequence	17903..18376	Trimethoprim	X12868	dfrA5	100	474/474	DAQIZG010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022067 SAMN37821969-rid19930913.guided.49, whole genome shotgun sequence	2154..2627	Trimethoprim	X12868																																																																																																																																																																																																																																																																																																																																																																																																																gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	DAQIZG010000011.1	95115..95984	99.31	870	0						
GCA_032922405.1_PDT001950978.1_genomic.fna	Salmonella_enterica	0.522	164.846 KB	11	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIZK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00037051 SAMN37822205-rid19929383.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIZK010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00037051 SAMN37822205-rid19929383.guided.34, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIZK010000012.1	95115..95984	99.195	870	0						
GCA_032922415.1_PDT001950979.1_genomic.fna	Salmonella_enterica	0.5209	115.029 KB	15	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIZH010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00036889 SAMN37822204-rid19928063.denovo.002, whole genome shotgun sequence	261763..262200	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIZH010000117.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00036889 SAMN37822204-rid19928063.guided.037, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQIZH010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00036889 SAMN37822204-rid19928063.denovo.028, whole genome shotgun sequence	43515..43776																																																						avrA	DAQIZH010000007.1	93997..94865	98.851	870	0						
GCA_032922445.1_PDT001950976.1_genomic.fna	Salmonella_enterica	0.5225	132.595 KB	11	aroC_147,dnaN_13,hemD_15,hisD_123,purE_140,sucA_7,thrA_17	466	9,46:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_140	sucA	100	100	sucA_7	thrA	100	100	thrA_17	9,46	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Cochin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIZJ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00037170 SAMN37822208-rid19929373.denovo.03, whole genome shotgun sequence	52327..52764	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIZJ010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00037170 SAMN37822208-rid19929373.guided.33, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIZJ010000005.1	122584..123452	99.655	869	0						
GCA_032922465.1_PDT001950974.1_genomic.fna	Salmonella_enterica	0.5221	155.113 KB	11	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIZL010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00037526 SAMN37822211-rid19928053.denovo.21, whole genome shotgun sequence	25626..26063	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIZL010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00037526 SAMN37822211-rid19928053.guided.37, whole genome shotgun sequence	15504..15941	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIZL010000012.1	95115..95984	99.195	870	0						
GCA_032922485.1_PDT001950973.1_genomic.fna	Salmonella_enterica	0.522	105.624 KB	12	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIZM010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00037527 SAMN37822212-rid19928043.denovo.26, whole genome shotgun sequence	17288..17725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIZM010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00037527 SAMN37822212-rid19928043.guided.44, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIZM010000008.1	95115..95984	99.195	870	0						
GCA_032922505.1_PDT001950971.1_genomic.fna	Salmonella_enterica	0.5219	217.395 KB	7	aroC_147,dnaN_13,hemD_15,hisD_123,purE_140,sucA_7,thrA_17	466	3,10:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_140	sucA	100	100	sucA_7	thrA	100	100	thrA_17	3,10	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Zanzibar		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIZN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00037628 SAMN37822214-rid19929353.denovo.01, whole genome shotgun sequence	386799..387236	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIZN010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00037628 SAMN37822214-rid19929353.guided.21, whole genome shotgun sequence	29665..30102	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIZN010000007.1	122583..123451	99.655	869	0						
GCA_032922525.1_PDT001950970.1_genomic.fna	Salmonella_enterica	0.5211	108.449 KB	13	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pHCM2),IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIZO010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00037808 SAMN37822215-rid19929343.denovo.004, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIZO010000105.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00037808 SAMN37822215-rid19929343.guided.038, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	97.17	884 / 875	DAQIZO010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00037808 SAMN37822215-rid19929343.denovo.013, whole genome shotgun sequence	8627..9510	enterobacteriales	IncFII(S)	100	262 / 262	DAQIZO010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00037808 SAMN37822215-rid19929343.denovo.036, whole genome shotgun sequence	25676..25937																																																avrA	DAQIZO010000003.1	93997..94866	98.851	870	0						
GCA_032922565.1_PDT001950960.1_genomic.fna	Salmonella_enterica	0.5208	61.417 KB	24	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIZS010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044140 SAMN37822312-rid19929293.denovo.013, whole genome shotgun sequence	12859..13293	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIZS010000133.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044140 SAMN37822312-rid19929293.guided.041, whole genome shotgun sequence	14254..14688	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032922585.1_PDT001950962.1_genomic.fna	Salmonella_enterica	0.5219	82.447 KB	18	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIZT010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00043849 SAMN37822310-rid19930863.denovo.022, whole genome shotgun sequence	20193..20630	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIZT010000121.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00043849 SAMN37822310-rid19930863.guided.044, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIZT010000008.1	107491..108360	99.31	870	0						
GCA_032922605.1_PDT001950968.1_genomic.fna	Salmonella_enterica	0.5199	249.175 KB	6	aroC_61,dnaN_294,hemD_25,hisD_194,purE_136,sucA_45,thrA_126	1419	41:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_61	dnaN	100	100	dnaN_294	hemD	100	100	hemD_25	hisD	100	100	hisD_194	purE	100	100	purE_136	sucA	100	100	sucA_45	thrA	100	100	thrA_126	41	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Waycross		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQIZQ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Waycross isolate AUSMDU00037905 SAMN37822217-rid19929333.denovo.02, whole genome shotgun sequence	60335..60772	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQIZQ010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Waycross isolate AUSMDU00037905 SAMN37822217-rid19929333.guided.22, whole genome shotgun sequence	14098..14535	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQIZQ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Waycross isolate AUSMDU00037905 SAMN37822217-rid19929333.denovo.16, whole genome shotgun sequence	75153..75294																																																						avrA	DAQIZQ010000004.1	145446..146315	99.425	870	0						
GCA_032922625.1_PDT001950964.1_genomic.fna	Salmonella_enterica	0.5227	92.868 KB	18	aroC_2,dnaN_4,hemD_40,hisD_43,purE_481,sucA_2,thrA_425	2125	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_4	hemD	100	100	hemD_40	hisD	100	100	hisD_43	purE	100	100	purE_481	sucA	100	100	sucA_2	thrA	100	100	thrA_425	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIZR010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00043750 SAMN37822308-rid19928023.denovo.28, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIZR010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00043750 SAMN37822308-rid19928023.guided.30, whole genome shotgun sequence	24987..25424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIZR010000006.1	105443..106312	99.77	870	0						
GCA_032922645.1_PDT001950966.1_genomic.fna	Salmonella_enterica	0.5223	92.678 KB	17	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	4	aac(6')-Iaa,aac(6')-Iaa,sul1,sul1,tet(A),tet(A),dfrA5,dfrA5	1	gyrA_p.S83Y	0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIZP010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00043700 SAMN37822306-rid19930873.denovo.08, whole genome shotgun sequence	36906..37343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIZP010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00043700 SAMN37822306-rid19930873.guided.42, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	DAQIZP010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00043700 SAMN37822306-rid19930873.denovo.58, whole genome shotgun sequence	18901..19740	Sulfamethoxazole	X15024	sul1	100	840/840	DAQIZP010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00043700 SAMN37822306-rid19930873.guided.83, whole genome shotgun sequence	3065..3904	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	DAQIZP010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00043700 SAMN37822306-rid19930873.denovo.40, whole genome shotgun sequence	1847..3046	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQIZP010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00043700 SAMN37822306-rid19930873.guided.47, whole genome shotgun sequence	2145..3344	Doxycycline, Tetracycline	AJ517790	dfrA5	100	474/474	DAQIZP010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00043700 SAMN37822306-rid19930873.denovo.58, whole genome shotgun sequence	17903..18376	Trimethoprim	X12868	dfrA5	100	474/474	DAQIZP010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00043700 SAMN37822306-rid19930873.guided.83, whole genome shotgun sequence	2067..2540	Trimethoprim	X12868																																																																																																																																																																																																																																																																																																																																																																																																																gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	DAQIZP010000023.1	43545..44414	99.31	870	0						
GCA_032922665.1_PDT001950952.1_genomic.fna	Salmonella_enterica	0.5227	121.15 KB	13	aroC_101,dnaN_64,hemD_25,hisD_163,purE_84,sucA_6,thrA_101	523	9:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_101	dnaN	100	100	dnaN_64	hemD	100	100	hemD_25	hisD	100	100	hisD_163	purE	100	100	purE_84	sucA	100	100	sucA_6	thrA	100	100	thrA_101	9	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Wangata		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIZV010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00044628 SAMN37822319-rid19930833.denovo.33, whole genome shotgun sequence	98..535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIZV010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00044628 SAMN37822319-rid19930833.guided.38, whole genome shotgun sequence	42416..42853	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQIZV010000016.1	39430..40299	98.966	870	0						
GCA_032922685.1_PDT001950951.1_genomic.fna	Salmonella_enterica	0.5209	73.469 KB	21	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	1,3,19:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	1,3,19	r	z6	Salmonella enterica subspecies enterica (subspecies I)	I 1,3,19:r:z6	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIZW010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00044675 SAMN37822320-rid19929253.denovo.005, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIZW010000144.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00044675 SAMN37822320-rid19929253.guided.057, whole genome shotgun sequence	31438..31875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	DAQIZW010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00044675 SAMN37822320-rid19929253.denovo.046, whole genome shotgun sequence	25532..25793																																																						avrA	DAQIZW010000024.1	1..618	99.353	618	0	avrA	DAQIZW010000049.1	39431..39683	98.024	253	2.78e-125
GCA_032922705.1_PDT001950957.1_genomic.fna	Salmonella_enterica	0.5226	87.595 KB	15	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIZU010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00044237 SAMN37822314-rid19930853.denovo.06, whole genome shotgun sequence	48283..48720	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIZU010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00044237 SAMN37822314-rid19930853.guided.56, whole genome shotgun sequence	10165..10602	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIZU010000017.1	43566..44435	99.195	870	0						
GCA_032922725.1_PDT001950953.1_genomic.fna	Salmonella_enterica	0.5207	84.252 KB	20	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQIZX010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044605 SAMN37822318-rid19929263.denovo.019, whole genome shotgun sequence	12887..13321	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQIZX010000118.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044605 SAMN37822318-rid19929263.guided.037, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032922785.1_PDT001950941.1_genomic.fna	Salmonella_enterica	0.5219	108.555 KB	15	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQIZY010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00045473 SAMN37822333-rid19929223.denovo.09, whole genome shotgun sequence	17806..18243	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQIZY010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00045473 SAMN37822333-rid19929223.guided.15, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQIZY010000012.1	124137..125006	99.195	870	0						
GCA_032922805.1_PDT001950934.1_genomic.fna	Salmonella_enterica	0.5216	157.018 KB	9	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJAA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00023394 SAMN37821999-rid19927963.denovo.01, whole genome shotgun sequence	149906..150343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJAA010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00023394 SAMN37821999-rid19927963.guided.17, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																											avrA	DAQJAA010000006.1	149656..150525	99.31	870	0						
GCA_032922825.1_PDT001950936.1_genomic.fna	Salmonella_enterica	0.5217	90.005 KB	20	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJAE010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00023231 SAMN37821997-rid19930753.denovo.034, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJAE010000149.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00023231 SAMN37821997-rid19930753.guided.105, whole genome shotgun sequence	2204..2641	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.47	129 / 131	DAQJAE010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00023231 SAMN37821997-rid19930753.denovo.102, whole genome shotgun sequence	458..586	enterobacteriales	IncFII(S)	100	262 / 262	DAQJAE010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00023231 SAMN37821997-rid19930753.denovo.063, whole genome shotgun sequence	6639..6900																																																avrA	DAQJAE010000009.1	39431..40300	98.851	870	0						
GCA_032922845.1_PDT001950950.1_genomic.fna	Salmonella_enterica	0.5228	62.641 KB	22	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColpVC	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJAD010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00044682 SAMN37822321-rid19930823.denovo.020, whole genome shotgun sequence	17246..17683	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJAD010000138.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00044682 SAMN37822321-rid19930823.guided.092, whole genome shotgun sequence	9544..9981	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	98.96	193 / 193	DAQJAD010000117.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00044682 SAMN37822321-rid19930823.denovo.120, whole genome shotgun sequence	805..997																																																						avrA	DAQJAD010000033.1	43577..44446	99.195	870	0						
GCA_032922865.1_PDT001950940.1_genomic.fna	Salmonella_enterica	0.5212	91.517 KB	19	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQIZZ010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00022718 SAMN37821983-rid19930773.denovo.019, whole genome shotgun sequence	90961..91398	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQIZZ010000134.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00022718 SAMN37821983-rid19930773.guided.058, whole genome shotgun sequence	25488..25925	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQIZZ010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00022718 SAMN37821983-rid19930773.denovo.097, whole genome shotgun sequence	357..487	enterobacteriales	IncFII(S)	100	262 / 262	DAQIZZ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00022718 SAMN37821983-rid19930773.denovo.046, whole genome shotgun sequence	25902..26163																																																avrA	DAQIZZ010000006.1	60548..61417	98.851	870	0						
GCA_032922885.1_PDT001950929.1_genomic.fna	Salmonella_enterica	0.5215	100.275 KB	16	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJAF010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00023712 SAMN37822006-rid19927953.denovo.002, whole genome shotgun sequence	229298..229735	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJAF010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00023712 SAMN37822006-rid19927953.guided.039, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	DAQJAF010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00023712 SAMN37822006-rid19927953.denovo.026, whole genome shotgun sequence	43513..43774																																																						avrA	DAQJAF010000001.1	39527..40395	98.851	870	0						
GCA_032922905.1_PDT001950925.1_genomic.fna	Salmonella_enterica	0.5225	170.776 KB	9	aroC_101,dnaN_64,hemD_25,hisD_163,purE_84,sucA_6,thrA_101	523	9:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_101	dnaN	100	100	dnaN_64	hemD	100	100	hemD_25	hisD	100	100	hisD_163	purE	100	100	purE_84	sucA	100	100	sucA_6	thrA	100	100	thrA_101	9	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Wangata		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJAC010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00023873 SAMN37822011-rid19930703.denovo.02, whole genome shotgun sequence	98..535	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJAC010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Wangata isolate AUSMDU00023873 SAMN37822011-rid19930703.guided.28, whole genome shotgun sequence	42416..42853	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJAC010000013.1	84211..85080	98.966	870	0						
GCA_032922925.1_PDT001950927.1_genomic.fna	Salmonella_enterica	0.5198	133.843 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQJAB010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00023764 SAMN37822009-rid19930713.denovo.07, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQJAB010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00023764 SAMN37822009-rid19930713.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032922945.1_PDT001950924.1_genomic.fna	Salmonella_enterica	0.5216	204.511 KB	7	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJAG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00023958 SAMN37822013-rid19927933.denovo.01, whole genome shotgun sequence	149892..150329	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJAG010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00023958 SAMN37822013-rid19927933.guided.26, whole genome shotgun sequence	11596..12033	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJAG010000011.1	95115..95984	99.195	870	0						
GCA_032922965.1_PDT001950918.1_genomic.fna	Salmonella_enterica	0.5214	213.88 KB	8	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJAH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00024278 SAMN37822019-rid19927913.denovo.01, whole genome shotgun sequence	149876..150313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJAH010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00024278 SAMN37822019-rid19927913.guided.18, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJAH010000014.1	95115..95984	99.195	870	0						
GCA_032922985.1_PDT001950923.1_genomic.fna	Salmonella_enterica	0.5212	89.976 KB	20	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJAK010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00021277 SAMN37821951-rid19929173.denovo.047, whole genome shotgun sequence	37646..38083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJAK010000122.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00021277 SAMN37821951-rid19929173.guided.069, whole genome shotgun sequence	18120..18557	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQJAK010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00021277 SAMN37821951-rid19929173.denovo.024, whole genome shotgun sequence	68203..68464																																																						avrA	DAQJAK010000012.1	43201..44069	98.851	870	0						
GCA_032923005.1_PDT001950919.1_genomic.fna	Salmonella_enterica	0.5213	213.88 KB	9	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJAI010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00024270 SAMN37822018-rid19927923.denovo.03, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJAI010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00024270 SAMN37822018-rid19927923.guided.17, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJAI010000014.1	95115..95984	99.195	870	0						
GCA_032923025.1_PDT001950916.1_genomic.fna	Salmonella_enterica	0.5214	140.164 KB	11	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJAL010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00024351 SAMN37822021-rid19929153.denovo.04, whole genome shotgun sequence	150012..150449	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJAL010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00024351 SAMN37822021-rid19929153.guided.48, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJAL010000013.1	60935..61804	99.31	870	0						
GCA_032923035.1_PDT001950917.1_genomic.fna	Salmonella_enterica	0.5212	160.13 KB	12	aroC_20,dnaN_4,hemD_23,hisD_14,purE_16,sucA_19,thrA_140	423	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_20	dnaN	100	100	dnaN_4	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_19	thrA	100	100	thrA_140	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJAJ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar 1,4,12,27:b:- isolate AUSMDU00024288 SAMN37822020-rid19927903.denovo.13, whole genome shotgun sequence	37880..38317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJAJ010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar 1,4,12,27:b:- isolate AUSMDU00024288 SAMN37822020-rid19927903.guided.24, whole genome shotgun sequence	42421..42858	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032923065.1_PDT001950912.1_genomic.fna	Salmonella_enterica	0.5221	101.188 KB	15	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJAO010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00028814 SAMN37822104-rid19927883.denovo.09, whole genome shotgun sequence	57247..57684	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJAO010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00028814 SAMN37822104-rid19927883.guided.46, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJAO010000011.1	43666..44535	99.195	870	0						
GCA_032923085.1_PDT001950914.1_genomic.fna	Salmonella_enterica	0.5221	191.07 KB	9	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJAM010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00024374 SAMN37822023-rid19927893.denovo.06, whole genome shotgun sequence	42609..43046	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJAM010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00024374 SAMN37822023-rid19927893.guided.42, whole genome shotgun sequence	2943..3380	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJAM010000012.1	95115..95984	99.195	870	0						
GCA_032923105.1_PDT001950913.1_genomic.fna	Salmonella_enterica	0.5206	134.713 KB	13	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQJAN010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021595 SAMN37821960-rid19929143.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQJAN010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00021595 SAMN37821960-rid19929143.guided.41, whole genome shotgun sequence	11574..12008	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032923125.1_PDT001950911.1_genomic.fna	Salmonella_enterica	0.5217	96.919 KB	18	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJAP010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00028857 SAMN37822105-rid19929133.denovo.02, whole genome shotgun sequence	52277..52714	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJAP010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00028857 SAMN37822105-rid19929133.guided.43, whole genome shotgun sequence	14157..14594	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJAP010000005.1	107940..108809	99.195	870	0						
GCA_032923145.1_PDT001950908.1_genomic.fna	Salmonella_enterica	0.5214	89.871 KB	17	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJAR010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00029025 SAMN37822108-rid19927863.denovo.043, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJAR010000110.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00029025 SAMN37822108-rid19927863.guided.042, whole genome shotgun sequence	37698..38135	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQJAR010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00029025 SAMN37822108-rid19927863.denovo.022, whole genome shotgun sequence	68874..69135																																																						avrA	DAQJAR010000012.1	93586..94454	98.851	870	0						
GCA_032923165.1_PDT001950907.1_genomic.fna	Salmonella_enterica	0.5219	156.761 KB	10	aroC_147,dnaN_13,hemD_15,hisD_123,purE_140,sucA_7,thrA_17	466	3,10:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_140	sucA	100	100	sucA_7	thrA	100	100	thrA_17	3,10	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Zanzibar		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJAS010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00029036 SAMN37822109-rid19927853.denovo.07, whole genome shotgun sequence	52448..52885	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJAS010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00029036 SAMN37822109-rid19927853.guided.33, whole genome shotgun sequence	33530..33967	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJAS010000009.1	62031..62899	99.655	869	0						
GCA_032923185.1_PDT001950906.1_genomic.fna	Salmonella_enterica	0.5214	197.121 KB	9	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJAQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00029069 SAMN37822110-rid19929123.denovo.01, whole genome shotgun sequence	150080..150517	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJAQ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00029069 SAMN37822110-rid19929123.guided.18, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJAQ010000013.1	95115..95984	99.195	870	0						
GCA_032923205.1_PDT001950904.1_genomic.fna	Salmonella_enterica	0.5207	98.397 KB	18	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJAT010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00029188 SAMN37822112-rid19927843.denovo.023, whole genome shotgun sequence	83402..83839	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJAT010000110.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00029188 SAMN37822112-rid19927843.guided.074, whole genome shotgun sequence	9141..9578	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	DAQJAT010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00029188 SAMN37822112-rid19927843.denovo.031, whole genome shotgun sequence	43515..43776																																																						avrA	DAQJAT010000010.1	39431..40299	98.851	870	0						
GCA_032923225.1_PDT001950902.1_genomic.fna	Salmonella_enterica	0.5205	92.249 KB	16	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJAV010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00021603 SAMN37821961-rid19927833.denovo.44, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJAV010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00021603 SAMN37821961-rid19927833.guided.61, whole genome shotgun sequence	15577..16014	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQJAV010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00021603 SAMN37821961-rid19927833.denovo.26, whole genome shotgun sequence	68874..69135																																																						avrA	DAQJAV010000014.1	93586..94454	98.851	870	0						
GCA_032923245.1_PDT001950903.1_genomic.fna	Salmonella_enterica	0.522	78.254 KB	20	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJAU010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00029247 SAMN37822113-rid19929113.denovo.025, whole genome shotgun sequence	17223..17660	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJAU010000104.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00029247 SAMN37822113-rid19929113.guided.048, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJAU010000005.1	95115..95984	99.195	870	0						
GCA_032923265.1_PDT001950901.1_genomic.fna	Salmonella_enterica	0.5223	80.01 KB	20	aroC_450,dnaN_442,hemD_10,hisD_12,purE_76,sucA_2,thrA_8	3044	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(S),IncFIB(pN55391),IncFII(S)	aroC	100	100	aroC_450	dnaN	100	100	dnaN_442	hemD	100	100	hemD_10	hisD	100	100	hisD_12	purE	100	100	purE_76	sucA	100	100	sucA_2	thrA	100	100	thrA_8	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQJAW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00029260 SAMN37822114-rid19929103.denovo.001, whole genome shotgun sequence	385072..385509	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQJAW010000156.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00029260 SAMN37822114-rid19929103.guided.060, whole genome shotgun sequence	14134..14571	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQJAW010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00029260 SAMN37822114-rid19929103.denovo.031, whole genome shotgun sequence	47532..48174	enterobacteriales	IncFIB(pN55391)	98.75	560 / 560	DAQJAW010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00029260 SAMN37822114-rid19929103.denovo.079, whole genome shotgun sequence	9121..9680		enterobacteriales	IncFII(S)	97.71	262 / 262	DAQJAW010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00029260 SAMN37822114-rid19929103.denovo.031, whole genome shotgun sequence	57486..57745																																																				
GCA_032923305.1_ASM3292330v1_genomic.fna	Salmonella_enterica	0.5214	282.781 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,sul2	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	JAUMTQ010000001.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 22-38 NODE_1_length_919452_cov_29.518703, whole genome shotgun sequence	337974..338411	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	JAUMTQ010000034.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 22-38 NODE_34_length_4639_cov_27.830452, whole genome shotgun sequence	136..972	Streptomycin	M28829	aph(3'')-Ib	100	804/804	JAUMTQ010000034.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 22-38 NODE_34_length_4639_cov_27.830452, whole genome shotgun sequence	972..1775	Streptomycin	AF321551	blaTEM-1B	100	861/861	JAUMTQ010000037.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 22-38 NODE_37_length_2168_cov_29.474277, whole genome shotgun sequence	660..1520	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	JAUMTQ010000034.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 22-38 NODE_34_length_4639_cov_27.830452, whole genome shotgun sequence	1836..2651	Sulfamethoxazole	HQ840942																																																																																																																																																																																																																																																																																																																																																																																																																																																									enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	JAUMTQ010000026.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 22-38 NODE_26_length_23092_cov_97.227302, whole genome shotgun sequence	17656..17797																																																						avrA	JAUMTQ010000002.1	540875..541744	99.885	870	0						
GCA_032923325.1_ASM3292332v1_genomic.fna	Salmonella_enterica	0.5212	158.682 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,sul2,tet(B)	0		2	Col(pHAD28),Col440I	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	JAUMTO010000001.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 19-361 NODE_1_length_820655_cov_57.262218, whole genome shotgun sequence	482840..483277	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	JAUMTO010000056.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 19-361 NODE_56_length_4496_cov_56.645125, whole genome shotgun sequence	3597..4433	Streptomycin	M28829	aph(3'')-Ib	100	804/804	JAUMTO010000056.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 19-361 NODE_56_length_4496_cov_56.645125, whole genome shotgun sequence	2794..3597	Streptomycin	AF321551	blaTEM-1B	100	861/861	JAUMTO010000062.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 19-361 NODE_62_length_2021_cov_59.991353, whole genome shotgun sequence	588..1448	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	JAUMTO010000056.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 19-361 NODE_56_length_4496_cov_56.645125, whole genome shotgun sequence	1918..2733	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	JAUMTO010000044.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 19-361 NODE_44_length_17228_cov_61.516974, whole genome shotgun sequence	8692..9897	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	90.84	131 / 131	JAUMTO010000053.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 19-361 NODE_53_length_6045_cov_303.570117, whole genome shotgun sequence	427..557	enterobacteriales	Col440I	93.64	110 / 114	JAUMTO010000058.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 19-361 NODE_58_length_3458_cov_782.494270, whole genome shotgun sequence	2583..2692																																																avrA	JAUMTO010000002.1	305153..306022	99.885	870	0						
GCA_032923345.1_ASM3292334v1_genomic.fna	Salmonella_enterica	0.5215	163.389 KB	10	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaCTX-M-15,sul2,tet(B),dfrA14	0		2	Col156,Col156,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	JAUMTP010000001.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 1146 NODE_1_length_625463_cov_117.050495, whole genome shotgun sequence	145305..145742	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	JAUMTP010000055.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 1146 NODE_55_length_4496_cov_130.395406, whole genome shotgun sequence	64..900	Streptomycin	M28829	aph(3'')-Ib	100	804/804	JAUMTP010000055.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 1146 NODE_55_length_4496_cov_130.395406, whole genome shotgun sequence	900..1703	Streptomycin	AF321551	blaTEM-1B	100	861/861	JAUMTP010000063.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 1146 NODE_63_length_2025_cov_145.032995, whole genome shotgun sequence	590..1450	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-15	100	876/876	JAUMTP010000064.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 1146 NODE_64_length_1613_cov_137.654685, whole genome shotgun sequence	489..1364	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	sul2	100	816/816	JAUMTP010000055.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 1146 NODE_55_length_4496_cov_130.395406, whole genome shotgun sequence	1764..2579	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	JAUMTP010000043.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 1146 NODE_43_length_18730_cov_130.289960, whole genome shotgun sequence	10195..11400	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA14	100	474/474	JAUMTP010000041.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 1146 NODE_41_length_22022_cov_160.130332, whole genome shotgun sequence	2670..3143	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col156	100	154 / 154	JAUMTP010000053.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 1146 NODE_53_length_5206_cov_405.057659, whole genome shotgun sequence	1300..1453	enterobacteriales	Col156	94.81	154 / 154	JAUMTP010000057.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 1146 NODE_57_length_3856_cov_312.904236, whole genome shotgun sequence	920..1073		enterobacteriales	IncN	99.81	514 / 514	JAUMTP010000048.1 Salmonella enterica subsp. enterica serovar 1,4,5,12:i:- strain 1146 NODE_48_length_6544_cov_146.576668, whole genome shotgun sequence	368..881																																									avrA	JAUMTP010000005.1	173713..174582	99.885	870	0						
GCA_032923385.1_ASM3292338v1_genomic.fna	Salmonella_enterica	0.5208	102.214 KB	14	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	1	aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	JAUMTN010000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain 16-11 NODE_1_length_416685_cov_32.386344, whole genome shotgun sequence	255335..255772	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																avrA	JAUMTN010000005.1	39426..40295	99.885	870	0						
GCA_032923405.1_PDT001950938.1_genomic.fna	Salmonella_enterica	0.5209	84.355 KB	19	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQJBA010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00023165 SAMN37821995-rid19929213.denovo.003, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQJBA010000104.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00023165 SAMN37821995-rid19929213.guided.066, whole genome shotgun sequence	10146..10580	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032923425.1_PDT001950946.1_genomic.fna	Salmonella_enterica	0.5228	61.461 KB	24	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJBE010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00045323 SAMN37822327-rid19930803.denovo.090, whole genome shotgun sequence	1553..1990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJBE010000124.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00045323 SAMN37822327-rid19930803.guided.067, whole genome shotgun sequence	14052..14489	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJBE010000008.1	95115..95984	99.195	870	0						
GCA_032923445.1_PDT001950930.1_genomic.fna	Salmonella_enterica	0.522	224.275 KB	8	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJBB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00023710 SAMN37822005-rid19930723.denovo.01, whole genome shotgun sequence	52274..52711	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJBB010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00023710 SAMN37822005-rid19930723.guided.21, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJBB010000005.1	148153..149022	99.77	870	0						
GCA_032923465.1_PDT001950937.1_genomic.fna	Salmonella_enterica	0.5205	98.838 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQJAY010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00023166 SAMN37821996-rid19930763.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQJAY010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00023166 SAMN37821996-rid19930763.guided.66, whole genome shotgun sequence	10184..10618	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032923485.1_PDT001950939.1_genomic.fna	Salmonella_enterica	0.5222	162.499 KB	10	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJAX010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00023148 SAMN37821994-rid19927973.denovo.16, whole genome shotgun sequence	17257..17694	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJAX010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00023148 SAMN37821994-rid19927973.guided.46, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJAX010000010.1	95115..95984	99.195	870	0						
GCA_032923505.1_PDT001950900.1_genomic.fna	Salmonella_enterica	0.5219	95.682 KB	18	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJBC010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00029429 SAMN37822115-rid19930643.denovo.023, whole genome shotgun sequence	17257..17694	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJBC010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00029429 SAMN37822115-rid19930643.guided.046, whole genome shotgun sequence	14266..14703	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQJBC010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00029429 SAMN37822115-rid19930643.denovo.085, whole genome shotgun sequence	400..530	enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJBC010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00029429 SAMN37822115-rid19930643.denovo.092, whole genome shotgun sequence	967..1095																																																avrA	DAQJBC010000016.1	95115..95984	99.195	870	0						
GCA_032923525.1_PDT001950898.1_genomic.fna	Salmonella_enterica	0.5203	113.336 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQJAZ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00029481 SAMN37822117-rid19927813.denovo.13, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQJAZ010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00029481 SAMN37822117-rid19927813.guided.52, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032923545.1_PDT001950896.1_genomic.fna	Salmonella_enterica	0.5217	101.699 KB	15	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJBL010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00029783 SAMN37822119-rid19929093.denovo.15, whole genome shotgun sequence	17257..17694	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJBL010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00029783 SAMN37822119-rid19929093.guided.40, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJBL010000016.1	61526..62395	99.195	870	0						
GCA_032923565.1_PDT001950897.1_genomic.fna	Salmonella_enterica	0.5223	140.458 KB	14	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJBD010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00029605 SAMN37822118-rid19927803.denovo.07, whole genome shotgun sequence	52312..52749	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJBD010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00029605 SAMN37822118-rid19927803.guided.43, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJBD010000010.1	95115..95984	99.195	870	0						
GCA_032923585.1_PDT001950893.1_genomic.fna	Salmonella_enterica	0.5204	84.251 KB	17	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQJBH010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00030035 SAMN37822122-rid19929083.denovo.05, whole genome shotgun sequence	12887..13321	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQJBH010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00030035 SAMN37822122-rid19929083.guided.40, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032923605.1_PDT001950894.1_genomic.fna	Salmonella_enterica	0.5216	63.209 KB	24	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJBM010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00029801 SAMN37822121-rid19927793.denovo.004, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJBM010000171.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00029801 SAMN37822121-rid19927793.guided.044, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQJBM010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00029801 SAMN37822121-rid19927793.denovo.034, whole genome shotgun sequence	43514..43775																																																						avrA	DAQJBM010000005.1	93997..94866	98.851	870	0						
GCA_032923625.1_PDT001950892.1_genomic.fna	Salmonella_enterica	0.5213	107.136 KB	15	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJBK010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00030110 SAMN37822123-rid19927783.denovo.44, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJBK010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00030110 SAMN37822123-rid19927783.guided.43, whole genome shotgun sequence	37698..38135	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQJBK010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00030110 SAMN37822123-rid19927783.denovo.24, whole genome shotgun sequence	68147..68408																																																						avrA	DAQJBK010000016.1	39431..40299	98.851	870	0						
GCA_032923645.1_PDT001950891.1_genomic.fna	Salmonella_enterica	0.522	137.463 KB	10	aroC_2,dnaN_4,hemD_40,hisD_43,purE_481,sucA_2,thrA_425	2125	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_4	hemD	100	100	hemD_40	hisD	100	100	hisD_43	purE	100	100	purE_481	sucA	100	100	sucA_2	thrA	100	100	thrA_425	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJBI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00021695 SAMN37821962-rid19930623.denovo.01, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJBI010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00021695 SAMN37821962-rid19930623.guided.22, whole genome shotgun sequence	44294..44731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJBI010000010.1	99637..100506	99.77	870	0						
GCA_032923665.1_PDT001950890.1_genomic.fna	Salmonella_enterica	0.5223	140.221 KB	13	aroC_6,dnaN_7,hemD_10,hisD_10,purE_39,sucA_10,thrA_14	303	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_39	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJBF010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00030213 SAMN37822124-rid19930613.denovo.26, whole genome shotgun sequence	17260..17697	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJBF010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00030213 SAMN37822124-rid19930613.guided.35, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJBF010000009.1	95115..95984	99.31	870	0						
GCA_032923685.1_PDT001950889.1_genomic.fna	Salmonella_enterica	0.5216	103.599 KB	14	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJBG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00030221 SAMN37822125-rid19930603.denovo.01, whole genome shotgun sequence	17228..17665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJBG010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00030221 SAMN37822125-rid19930603.guided.21, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJBG010000008.1	95115..95984	99.195	870	0						
GCA_032923705.1_PDT001950888.1_genomic.fna	Salmonella_enterica	0.5224	91.378 KB	17	aroC_2,dnaN_4,hemD_40,hisD_43,purE_481,sucA_2,thrA_425	2125	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_4	hemD	100	100	hemD_40	hisD	100	100	hisD_43	purE	100	100	purE_481	sucA	100	100	sucA_2	thrA	100	100	thrA_425	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJBJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00030259 SAMN37822126-rid19929073.denovo.001, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJBJ010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Thompson isolate AUSMDU00030259 SAMN37822126-rid19929073.guided.039, whole genome shotgun sequence	33562..33999	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJBJ010000004.1	165858..166727	99.77	870	0						
GCA_032923725.1_PDT001950887.1_genomic.fna	Salmonella_enterica	0.5204	140.22 KB	10	aroC_6,dnaN_7,hemD_10,hisD_10,purE_2,sucA_10,thrA_14	359	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_2	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJBS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00030266 SAMN37822127-rid19927773.denovo.01, whole genome shotgun sequence	250170..250607	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJBS010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00030266 SAMN37822127-rid19927773.guided.12, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJBS010000030.1	43656..44525	99.31	870	0						
GCA_032923745.1_PDT001950885.1_genomic.fna	Salmonella_enterica	0.5217	107.885 KB	14	aroC_147,dnaN_13,hemD_15,hisD_123,purE_140,sucA_7,thrA_17	466	9,46:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_140	sucA	100	100	sucA_7	thrA	100	100	thrA_17	9,46	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Cochin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJBP010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00030454 SAMN37822129-rid19930593.denovo.25, whole genome shotgun sequence	13058..13495	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJBP010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00030454 SAMN37822129-rid19930593.guided.51, whole genome shotgun sequence	14041..14478	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJBP010000006.1	102558..103426	99.655	869	0						
GCA_032923765.1_PDT001950886.1_genomic.fna	Salmonella_enterica	0.5218	117.496 KB	13	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJBN010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00030317 SAMN37822128-rid19929063.denovo.08, whole genome shotgun sequence	57229..57666	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJBN010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00030317 SAMN37822128-rid19929063.guided.29, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJBN010000015.1	43563..44432	99.195	870	0						
GCA_032923785.1_PDT001950884.1_genomic.fna	Salmonella_enterica	0.521	144.532 KB	13	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQJBO010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00030456 SAMN37822130-rid19929053.denovo.10, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQJBO010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00030456 SAMN37822130-rid19929053.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032923805.1_PDT001950881.1_genomic.fna	Salmonella_enterica	0.5218	251.529 KB	6	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJBR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00032399 SAMN37822161-rid19930583.denovo.01, whole genome shotgun sequence	150070..150507	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJBR010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00032399 SAMN37822161-rid19930583.guided.28, whole genome shotgun sequence	10389..10826	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJBR010000011.1	95115..95984	99.195	870	0						
GCA_032923825.1_PDT001950883.1_genomic.fna	Salmonella_enterica	0.5207	77.356 KB	19	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncFII(S),IncP1	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJBT010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00030479 SAMN37822131-rid19929043.denovo.029, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJBT010000162.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00030479 SAMN37822131-rid19929043.guided.077, whole genome shotgun sequence	15036..15473	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJBT010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00030479 SAMN37822131-rid19929043.denovo.109, whole genome shotgun sequence	1251..1381	enterobacteriales	IncFII(S)	99.62	262 / 262	DAQJBT010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00030479 SAMN37822131-rid19929043.denovo.064, whole genome shotgun sequence	6639..6900		enterobacteriales	IncP1	100	745 / 745	DAQJBT010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00030479 SAMN37822131-rid19929043.denovo.037, whole genome shotgun sequence	36731..37475																																									avrA	DAQJBT010000006.1	93586..94455	98.851	870	0						
GCA_032923845.1_PDT001950879.1_genomic.fna	Salmonella_enterica	0.5217	58.706 KB	26	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJBU010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00032530 SAMN37822163-rid19930563.denovo.016, whole genome shotgun sequence	80487..80924	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJBU010000152.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00032530 SAMN37822163-rid19930563.guided.094, whole genome shotgun sequence	15460..15897	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	DAQJBU010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00032530 SAMN37822163-rid19930563.denovo.092, whole genome shotgun sequence	6639..6900																																																						avrA	DAQJBU010000018.1	39431..40300	98.851	870	0						
GCA_032923865.1_PDT001950877.1_genomic.fna	Salmonella_enterica	0.522	132.927 KB	11	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJBQ010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00032556 SAMN37822164-rid19927753.denovo.12, whole genome shotgun sequence	42758..43195	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJBQ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00032556 SAMN37822164-rid19927753.guided.38, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJBQ010000008.1	95115..95984	99.195	870	0						
GCA_032923885.1_PDT001950876.1_genomic.fna	Salmonella_enterica	0.5217	96.325 KB	16	aroC_118,dnaN_107,hemD_8,hisD_51,purE_2,sucA_117,thrA_16	319	-:z29:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_118	dnaN	100	100	dnaN_107	hemD	100	100	hemD_8	hisD	100	100	hisD_51	purE	100	100	purE_2	sucA	100	100	sucA_117	thrA	100	100	thrA_16	-	z29	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z29:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJBZ010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Tennessee isolate AUSMDU00032740 SAMN37822165-rid19929023.denovo.012, whole genome shotgun sequence	12521..12958	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJBZ010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Tennessee isolate AUSMDU00032740 SAMN37822165-rid19929023.guided.046, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJBZ010000014.1	97243..98112	99.655	870	0						
GCA_032923905.1_PDT001950875.1_genomic.fna	Salmonella_enterica	0.5214	86.058 KB	19	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJCA010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00032746 SAMN37822166-rid19930553.denovo.002, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJCA010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00032746 SAMN37822166-rid19930553.guided.073, whole genome shotgun sequence	15590..16027	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	DAQJCA010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00032746 SAMN37822166-rid19930553.denovo.063, whole genome shotgun sequence	6639..6900																																																						avrA	DAQJCA010000007.1	60963..61832	98.851	870	0						
GCA_032923925.1_PDT001950873.1_genomic.fna	Salmonella_enterica	0.5221	110.714 KB	15	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJBW010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00032821 SAMN37822168-rid19929003.denovo.22, whole genome shotgun sequence	17282..17719	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJBW010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00032821 SAMN37822168-rid19929003.guided.43, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQJBW010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00032821 SAMN37822168-rid19929003.denovo.74, whole genome shotgun sequence	792..945																																																						avrA	DAQJBW010000008.1	95115..95984	99.195	870	0						
GCA_032923945.1_PDT001950868.1_genomic.fna	Salmonella_enterica	0.522	107.309 KB	14	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJBV010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00033915 SAMN37822173-rid19928993.denovo.15, whole genome shotgun sequence	42734..43171	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJBV010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00033915 SAMN37822173-rid19928993.guided.42, whole genome shotgun sequence	14777..15214	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	DAQJBV010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00033915 SAMN37822173-rid19928993.denovo.59, whole genome shotgun sequence	792..945																																																						avrA	DAQJBV010000009.1	95115..95984	99.195	870	0						
GCA_032923965.1_PDT001950866.1_genomic.fna	Salmonella_enterica	0.5208	61.641 KB	25	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJBY010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00033941 SAMN37822174-rid19928983.denovo.050, whole genome shotgun sequence	37656..38093	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJBY010000146.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00033941 SAMN37822174-rid19928983.guided.085, whole genome shotgun sequence	14828..15265	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQJBY010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00033941 SAMN37822174-rid19928983.denovo.016, whole genome shotgun sequence	68874..69135																																																						avrA	DAQJBY010000045.1	39431..40299	98.851	870	0						
GCA_032923985.1_PDT001950864.1_genomic.fna	Salmonella_enterica	0.5223	99.748 KB	15	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJBX010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00034317 SAMN37822176-rid19928973.denovo.23, whole genome shotgun sequence	17285..17722	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJBX010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00034317 SAMN37822176-rid19928973.guided.41, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJBX010000013.1	43549..44418	99.195	870	0						
GCA_032924005.1_PDT001950863.1_genomic.fna	Salmonella_enterica	0.5221	124.982 KB	13	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJCC010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00034511 SAMN37822178-rid19928963.denovo.02, whole genome shotgun sequence	57239..57676	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJCC010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00034511 SAMN37822178-rid19928963.guided.48, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJCC010000007.1	95115..95984	99.195	870	0						
GCA_032924025.1_PDT001950862.1_genomic.fna	Salmonella_enterica	0.522	103.733 KB	15	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColpVC	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJCB010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00034578 SAMN37822179-rid19927723.denovo.23, whole genome shotgun sequence	42734..43171	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJCB010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00034578 SAMN37822179-rid19927723.guided.43, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	100	193 / 193	DAQJCB010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00034578 SAMN37822179-rid19927723.denovo.71, whole genome shotgun sequence	192..384																																																						avrA	DAQJCB010000006.1	95115..95984	99.195	870	0						
GCA_032924045.1_PDT001950861.1_genomic.fna	Salmonella_enterica	0.5202	151.957 KB	11	aroC_6,dnaN_7,hemD_10,hisD_10,purE_2,sucA_10,thrA_14	359	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_2	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJCD010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00034628 SAMN37822180-rid19930503.denovo.03, whole genome shotgun sequence	85002..85439	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJCD010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00034628 SAMN37822180-rid19930503.guided.39, whole genome shotgun sequence	10211..10648	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJCD010000008.1	95115..95984	99.31	870	0						
GCA_032924065.1_PDT001950859.1_genomic.fna	Salmonella_enterica	0.5217	116.622 KB	13	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJCE010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00034959 SAMN37822182-rid19930483.denovo.02, whole genome shotgun sequence	149906..150343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJCE010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00034959 SAMN37822182-rid19930483.guided.25, whole genome shotgun sequence	15455..15892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJCE010000010.1	95115..95984	99.195	870	0						
GCA_032924085.1_PDT001950860.1_genomic.fna	Salmonella_enterica	0.5214	97.888 KB	16	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJCI010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Uganda isolate AUSMDU00034791 SAMN37822181-rid19930493.denovo.026, whole genome shotgun sequence	12572..13009	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJCI010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Uganda isolate AUSMDU00034791 SAMN37822181-rid19930493.guided.047, whole genome shotgun sequence	18898..19335	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJCI010000007.1	94022..94890	99.655	869	0						
GCA_032924105.1_PDT001950858.1_genomic.fna	Salmonella_enterica	0.5212	71.024 KB	21	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJCF010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00035285 SAMN37822183-rid19928953.denovo.045, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJCF010000130.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00035285 SAMN37822183-rid19928953.guided.044, whole genome shotgun sequence	37698..38135	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQJCF010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00035285 SAMN37822183-rid19928953.denovo.073, whole genome shotgun sequence	11532..11793																																																						avrA	DAQJCF010000008.1	39842..40711	98.851	870	0						
GCA_032924125.1_PDT001950856.1_genomic.fna	Salmonella_enterica	0.5221	140.224 KB	13	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJCG010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00035414 SAMN37822184-rid19928943.denovo.15, whole genome shotgun sequence	17218..17655	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJCG010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00035414 SAMN37822184-rid19928943.guided.51, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJCG010000008.1	95115..95984	99.195	870	0						
GCA_032924145.1_PDT001950853.1_genomic.fna	Salmonella_enterica	0.522	197.163 KB	7	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJCH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00035536 SAMN37822187-rid19927703.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJCH010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00035536 SAMN37822187-rid19927703.guided.35, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJCH010000011.1	95115..95984	99.195	870	0						
GCA_032924165.1_PDT001950849.1_genomic.fna	Salmonella_enterica	0.5221	190.115 KB	7	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJCJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040138 SAMN37822248-rid19928923.denovo.01, whole genome shotgun sequence	149872..150309	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJCJ010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040138 SAMN37822248-rid19928923.guided.28, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQJCJ010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040138 SAMN37822248-rid19928923.denovo.46, whole genome shotgun sequence	3981..4111																																																						avrA	DAQJCJ010000009.1	95115..95984	99.195	870	0						
GCA_032924205.1_PDT001950847.1_genomic.fna	Salmonella_enterica	0.5224	161.042 KB	10	aroC_147,dnaN_13,hemD_15,hisD_123,purE_140,sucA_7,thrA_17	466	3,10:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_140	sucA	100	100	sucA_7	thrA	100	100	thrA_17	3,10	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Zanzibar		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJCK010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00040229 SAMN37822250-rid19927673.denovo.04, whole genome shotgun sequence	227845..228282	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJCK010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Zanzibar isolate AUSMDU00040229 SAMN37822250-rid19927673.guided.27, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJCK010000008.1	122571..123439	99.54	869	0						
GCA_032924225.1_PDT001950845.1_genomic.fna	Salmonella_enterica	0.5224	140.193 KB	12	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJCL010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040325 SAMN37822252-rid19930453.denovo.03, whole genome shotgun sequence	42609..43046	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJCL010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040325 SAMN37822252-rid19930453.guided.50, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJCL010000005.1	124149..125018	99.195	870	0						
GCA_032924245.1_PDT001950843.1_genomic.fna	Salmonella_enterica	0.5219	107.134 KB	15	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJCP010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022253 SAMN37821975-rid19927663.denovo.09, whole genome shotgun sequence	42789..43226	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJCP010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00022253 SAMN37821975-rid19927663.guided.34, whole genome shotgun sequence	7383..7820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJCP010000005.1	95115..95984	99.195	870	0						
GCA_032924265.1_PDT001950844.1_genomic.fna	Salmonella_enterica	0.5216	77.654 KB	22	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	9,46:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	9,46	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Sokode		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJCN010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040327 SAMN37822253-rid19928893.denovo.038, whole genome shotgun sequence	120..557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJCN010000136.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040327 SAMN37822253-rid19928893.guided.048, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQJCN010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040327 SAMN37822253-rid19928893.denovo.103, whole genome shotgun sequence	357..487	enterobacteriales	IncFII(S)	100	262 / 262	DAQJCN010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00040327 SAMN37822253-rid19928893.denovo.047, whole genome shotgun sequence	25616..25877																																																avrA	DAQJCN010000006.1	93997..94866	98.851	870	0						
GCA_032924285.1_PDT001950839.1_genomic.fna	Salmonella_enterica	0.5222	100.995 KB	13	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJCQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040493 SAMN37822257-rid19928883.denovo.01, whole genome shotgun sequence	42609..43046	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJCQ010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040493 SAMN37822257-rid19928883.guided.61, whole genome shotgun sequence	10140..10577	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQJCQ010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00040493 SAMN37822257-rid19928883.denovo.73, whole genome shotgun sequence	478..608																																																						avrA	DAQJCQ010000008.1	60935..61804	99.195	870	0						
GCA_032924305.1_PDT001950835.1_genomic.fna	Salmonella_enterica	0.5217	189.931 KB	9	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJCO010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00028332 SAMN37822097-rid19924523.denovo.07, whole genome shotgun sequence	52365..52802	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJCO010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00028332 SAMN37822097-rid19924523.guided.22, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJCO010000013.1	95115..95984	99.195	870	0						
GCA_032924325.1_PDT001950834.1_genomic.fna	Salmonella_enterica	0.5213	82.261 KB	20	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	9,46:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	9,46	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Sokode		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJCS010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00028580 SAMN37822102-rid19923283.denovo.002, whole genome shotgun sequence	226254..226691	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJCS010000150.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00028580 SAMN37822102-rid19923283.guided.039, whole genome shotgun sequence	42428..42865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	DAQJCS010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00028580 SAMN37822102-rid19923283.denovo.063, whole genome shotgun sequence	6639..6900																																																						avrA	DAQJCS010000023.1	39539..40408	98.851	870	0						
GCA_032924345.1_PDT001950836.1_genomic.fna	Salmonella_enterica	0.522	189.873 KB	9	aroC_118,dnaN_107,hemD_8,hisD_51,purE_2,sucA_117,thrA_16	319	-:z29:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_118	dnaN	100	100	dnaN_107	hemD	100	100	hemD_8	hisD	100	100	hisD_51	purE	100	100	purE_2	sucA	100	100	sucA_117	thrA	100	100	thrA_16	-	z29	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z29:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJCM010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Tennessee isolate AUSMDU00027826 SAMN37822093-rid19927333.denovo.04, whole genome shotgun sequence	250615..251052	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJCM010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Tennessee isolate AUSMDU00027826 SAMN37822093-rid19927333.guided.26, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJCM010000001.1	174581..175450	99.655	870	0						
GCA_032924365.1_PDT001950833.1_genomic.fna	Salmonella_enterica	0.52	143.152 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQJCR010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00035936 SAMN37822194-rid19923853.denovo.07, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQJCR010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00035936 SAMN37822194-rid19923853.guided.45, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032924375.1_PDT001950832.1_genomic.fna	Salmonella_enterica	0.5199	114.546 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQJCT010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00036102 SAMN37822195-rid19920493.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQJCT010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00036102 SAMN37822195-rid19920493.guided.49, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032924405.1_PDT001950831.1_genomic.fna	Salmonella_enterica	0.5212	118.285 KB	14	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJCY010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00036150 SAMN37822196-rid19923843.denovo.003, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJCY010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00036150 SAMN37822196-rid19923843.guided.073, whole genome shotgun sequence	2406..2843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJCY010000002.1	93997..94865	98.851	870	0						
GCA_032924425.1_PDT001950829.1_genomic.fna	Salmonella_enterica	0.5221	98.645 KB	13	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJCV010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00036286 SAMN37822198-rid19921863.denovo.19, whole genome shotgun sequence	17218..17655	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJCV010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00036286 SAMN37822198-rid19921863.guided.42, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJCV010000008.1	95115..95984	99.195	870	0						
GCA_032924445.1_PDT001950830.1_genomic.fna	Salmonella_enterica	0.5215	214.35 KB	8	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col440I	aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJCU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00036154 SAMN37822197-rid19925933.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJCU010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00036154 SAMN37822197-rid19925933.guided.19, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col440I	93.81	113 / 114	DAQJCU010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00036154 SAMN37822197-rid19925933.denovo.39, whole genome shotgun sequence	2528..2639																																																						avrA	DAQJCU010000012.1	95115..95984	99.195	870	0						
GCA_032924465.1_PDT001950827.1_genomic.fna	Salmonella_enterica	0.5209	173.667 KB	9	aroC_6,dnaN_7,hemD_10,hisD_10,purE_2,sucA_10,thrA_14	359	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_2	sucA	100	100	sucA_10	thrA	100	100	thrA_14	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJCW010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00036681 SAMN37822200-rid19920483.denovo.07, whole genome shotgun sequence	52291..52728	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJCW010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00036681 SAMN37822200-rid19920483.guided.31, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJCW010000011.1	95115..95984	99.31	870	0						
GCA_032924485.1_PDT001950824.1_genomic.fna	Salmonella_enterica	0.5215	89.751 KB	19	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pHCM2),IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJCX010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00037084 SAMN37822207-rid19923273.denovo.002, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJCX010000142.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00037084 SAMN37822207-rid19923273.guided.083, whole genome shotgun sequence	7744..8181	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	97.17	884 / 875	DAQJCX010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00037084 SAMN37822207-rid19923273.denovo.021, whole genome shotgun sequence	8627..9510	enterobacteriales	IncFII(S)	100	262 / 262	DAQJCX010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00037084 SAMN37822207-rid19923273.denovo.016, whole genome shotgun sequence	68147..68408																																																avrA	DAQJCX010000011.1	39529..40398	98.851	870	0						
GCA_032924505.1_PDT001950818.1_genomic.fna	Salmonella_enterica	0.5205	65.596 KB	24	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	7	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-15,blaTEM-1B,blaCTX-M-15,blaTEM-1B,catA1,catA1,qnrS1,qnrS1,sul1,sul1,dfrA7,dfrA7	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQJCZ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044702 SAMN37822324-rid19925903.denovo.006, whole genome shotgun sequence	7526..7960	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQJCZ010000150.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044702 SAMN37822324-rid19925903.guided.065, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	blaCTX-M-15	100	876/876	DAQJCZ010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044702 SAMN37822324-rid19925903.denovo.076, whole genome shotgun sequence	14193..15068	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	DAQJCZ010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044702 SAMN37822324-rid19925903.denovo.076, whole genome shotgun sequence	17560..18420	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-15	100	876/876	DAQJCZ010000151.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044702 SAMN37822324-rid19925903.guided.075, whole genome shotgun sequence	3924..4799	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	DAQJCZ010000151.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044702 SAMN37822324-rid19925903.guided.075, whole genome shotgun sequence	572..1432	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQJCZ010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044702 SAMN37822324-rid19925903.denovo.098, whole genome shotgun sequence	8088..8747	Chloramphenicol	V00622	catA1	99.85	660/660	DAQJCZ010000155.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044702 SAMN37822324-rid19925903.guided.132, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	qnrS1	100	657/657	DAQJCZ010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044702 SAMN37822324-rid19925903.denovo.076, whole genome shotgun sequence	8896..9552	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQJCZ010000151.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044702 SAMN37822324-rid19925903.guided.075, whole genome shotgun sequence	9440..10096	Ciprofloxacin	AB187515	sul1	100	840/840	DAQJCZ010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044702 SAMN37822324-rid19925903.denovo.098, whole genome shotgun sequence	181..1020	Sulfamethoxazole	U12338	sul1	100	840/840	DAQJCZ010000154.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044702 SAMN37822324-rid19925903.guided.106, whole genome shotgun sequence	6209..7048	Sulfamethoxazole	U12338	dfrA7	100	474/474	DAQJCZ010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044702 SAMN37822324-rid19925903.denovo.098, whole genome shotgun sequence	1591..2064	Trimethoprim	AB161450	dfrA7	100	474/474	DAQJCZ010000154.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhi isolate AUSMDU00044702 SAMN37822324-rid19925903.guided.106, whole genome shotgun sequence	5165..5638	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																																						gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_032924525.1_PDT001950817.1_genomic.fna	Salmonella_enterica	0.523	80.085 KB	19	aroC_75,dnaN_67,hemD_10,hisD_17,purE_15,sucA_9,thrA_66	197	-:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_75	dnaN	100	100	dnaN_67	hemD	100	100	hemD_10	hisD	100	100	hisD_17	purE	100	100	purE_15	sucA	100	100	sucA_9	thrA	100	100	thrA_66	-	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJDA010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00045327 SAMN37822329-rid19920463.denovo.021, whole genome shotgun sequence	12516..12953	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJDA010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Virchow isolate AUSMDU00045327 SAMN37822329-rid19920463.guided.076, whole genome shotgun sequence	3296..3733	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJDA010000006.1	126401..127270	99.77	870	0						
GCA_032924545.1_PDT001950816.1_genomic.fna	Salmonella_enterica	0.5213	77.337 KB	22	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJDB010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00023416 SAMN37822002-rid19927313.denovo.002, whole genome shotgun sequence	122..559	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJDB010000141.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00023416 SAMN37822002-rid19927313.guided.091, whole genome shotgun sequence	11213..11650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.86	126 / 131	DAQJDB010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00023416 SAMN37822002-rid19927313.denovo.117, whole genome shotgun sequence	2004..2129	enterobacteriales	Col440I	94.74	114 / 114	DAQJDB010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00023416 SAMN37822002-rid19927313.denovo.114, whole genome shotgun sequence	336..449		enterobacteriales	IncFII(S)	100	262 / 262	DAQJDB010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Weltevreden isolate AUSMDU00023416 SAMN37822002-rid19927313.denovo.065, whole genome shotgun sequence	6638..6899																																									avrA	DAQJDB010000023.1	39431..40300	98.851	870	0						
GCA_032924565.1_PDT001950808.1_genomic.fna	Salmonella_enterica	0.5216	175.72 KB	8	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJDC010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00021485 SAMN37820204-rid19925863.denovo.02, whole genome shotgun sequence	298021..298458	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJDC010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00021485 SAMN37820204-rid19925863.guided.39, whole genome shotgun sequence	7577..8014	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJDC010000007.1	181771..182637	99.08	870	0						
GCA_032924575.1_PDT001950814.1_genomic.fna	Salmonella_enterica	0.5215	171.4 KB	9	aroC_61,dnaN_294,hemD_25,hisD_194,purE_136,sucA_45,thrA_126	1419	41:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_294	hemD	100	100	hemD_25	hisD	100	100	hisD_194	purE	100	100	purE_136	sucA	100	100	sucA_45	thrA	100	100	thrA_126	41	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Waycross		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJDD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Waycross isolate AUSMDU00023689 SAMN37822004-rid19923263.denovo.01, whole genome shotgun sequence	376687..377124	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJDD010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Waycross isolate AUSMDU00023689 SAMN37822004-rid19923263.guided.30, whole genome shotgun sequence	13986..14423	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJDD010000006.1	120114..120983	99.425	870	0						
GCA_032924605.1_PDT001950807.1_genomic.fna	Salmonella_enterica	0.521	170.936 KB	9	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJDG010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00023744 SAMN37820294-rid19920453.denovo.25, whole genome shotgun sequence	62338..62775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJDG010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00023744 SAMN37820294-rid19920453.guided.34, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJDG010000004.1	114963..115832	99.54	870	0						
GCA_032924615.1_PDT001950806.1_genomic.fna	Salmonella_enterica	0.5213	143.304 KB	12	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJDF010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00026090 SAMN37820383-rid19927293.denovo.03, whole genome shotgun sequence	91886..92323	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJDF010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00026090 SAMN37820383-rid19927293.guided.26, whole genome shotgun sequence	14162..14599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJDF010000002.1	94148..95017	99.54	870	0						
GCA_032924645.1_PDT001950804.1_genomic.fna	Salmonella_enterica	0.519	78.345 KB	21	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJDI010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00026106 SAMN37820384-rid19923253.denovo.025, whole genome shotgun sequence	11351..11788	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJDI010000125.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00026106 SAMN37820384-rid19923253.guided.051, whole genome shotgun sequence	24930..25367	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJDI010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00026106 SAMN37820384-rid19923253.denovo.013, whole genome shotgun sequence	59163..59489	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJDI010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00026106 SAMN37820384-rid19923253.denovo.013, whole genome shotgun sequence	74353..74982																																																avrA	DAQJDI010000045.1	39583..40452	99.77	870	0						
GCA_032924665.1_PDT001950803.1_genomic.fna	Salmonella_enterica	0.522	121.885 KB	14	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJDH010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00026126 SAMN37820385-rid19924493.denovo.12, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJDH010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00026126 SAMN37820385-rid19924493.guided.36, whole genome shotgun sequence	31072..31509	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJDH010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00026126 SAMN37820385-rid19924493.denovo.73, whole genome shotgun sequence	1189..1298																																																																	
GCA_032924685.1_PDT001950805.1_genomic.fna	Salmonella_enterica	0.5217	224.507 KB	7	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJDE010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00021613 SAMN37820213-rid19925853.denovo.04, whole genome shotgun sequence	137415..137852	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJDE010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00021613 SAMN37820213-rid19925853.guided.24, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJDE010000005.1	39591..40457	99.08	870	0						
GCA_032924725.1_PDT001950801.1_genomic.fna	Salmonella_enterica	0.5212	105.922 KB	15	aroC_99,dnaN_175,hemD_46,hisD_11,purE_111,sucA_180,thrA_1	580	9,46:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_99	dnaN	100	100	dnaN_175	hemD	100	100	hemD_46	hisD	100	100	hisD_11	purE	100	100	purE_111	sucA	100	100	sucA_180	thrA	100	100	thrA_1	9,46	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	I 9,46:y:1,5	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAQJDL010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orion isolate AUSMDU00026161 SAMN37820387-rid19927283.denovo.002, whole genome shotgun sequence	180003..180440	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAQJDL010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orion isolate AUSMDU00026161 SAMN37820387-rid19927283.guided.032, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032924745.1_PDT001950798.1_genomic.fna	Salmonella_enterica	0.5212	237.817 KB	7	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_1203	7555	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_1203	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJDK010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00026291 SAMN37820390-rid19925833.denovo.02, whole genome shotgun sequence	137687..138124	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJDK010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00026291 SAMN37820390-rid19925833.guided.29, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032924765.1_PDT001950787.1_genomic.fna	Salmonella_enterica	0.5215	105.264 KB	12	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJDO010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00027000 SAMN37820399-rid19920423.denovo.13, whole genome shotgun sequence	84764..85201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJDO010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00027000 SAMN37820399-rid19920423.guided.36, whole genome shotgun sequence	15443..15880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJDO010000002.1	111791..112660	99.54	870	0						
GCA_032924785.1_PDT001950796.1_genomic.fna	Salmonella_enterica	0.5207	101.431 KB	15	aroC_168,dnaN_14,hemD_347,hisD_559,purE_5,sucA_90,thrA_12	2002	-:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_168	dnaN	100	100	dnaN_14	hemD	100	100	hemD_347	hisD	100	100	hisD_559	purE	100	100	purE_5	sucA	100	100	sucA_90	thrA	100	100	thrA_12	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJDN010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00026367 SAMN37820392-rid19927633.denovo.019, whole genome shotgun sequence	52287..52724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJDN010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00026367 SAMN37820392-rid19927633.guided.037, whole genome shotgun sequence	1981..2418	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	DAQJDN010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00026367 SAMN37820392-rid19927633.denovo.002, whole genome shotgun sequence	120499..120921	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQJDN010000110.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00026367 SAMN37820392-rid19927633.guided.040, whole genome shotgun sequence	33789..34211	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJDN010000005.1	104666..105535	99.77	870	0						
GCA_032924805.1_PDT001950783.1_genomic.fna	Salmonella_enterica	0.5221	122.273 KB	11	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJDM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00027091 SAMN37820403-rid19925803.denovo.01, whole genome shotgun sequence	359133..359570	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJDM010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00027091 SAMN37820403-rid19925803.guided.42, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032924825.1_PDT001950777.1_genomic.fna	Salmonella_enterica	0.5222	144.619 KB	11	aroC_301,dnaN_272,hemD_48,hisD_16,purE_40,sucA_13,thrA_3	864	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_301	dnaN	100	100	dnaN_272	hemD	100	100	hemD_48	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_3	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJDP010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00027175 SAMN37820408-rid19920403.denovo.09, whole genome shotgun sequence	142498..142935	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJDP010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00027175 SAMN37820408-rid19920403.guided.38, whole genome shotgun sequence	16479..16916	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032924865.1_PDT001950799.1_genomic.fna	Salmonella_enterica	0.5215	132.069 KB	12	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJDQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00026182 SAMN37820389-rid19923243.denovo.01, whole genome shotgun sequence	152682..153119	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJDQ010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00026182 SAMN37820389-rid19923243.guided.24, whole genome shotgun sequence	16448..16885	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032924885.1_PDT001950795.1_genomic.fna	Salmonella_enterica	0.5225	121.904 KB	13	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJDS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00026384 SAMN37820393-rid19920433.denovo.01, whole genome shotgun sequence	113296..113733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJDS010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00026384 SAMN37820393-rid19920433.guided.52, whole genome shotgun sequence	9823..10260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJDS010000003.1	107988..108857	99.77	870	0						
GCA_032924905.1_PDT001950791.1_genomic.fna	Salmonella_enterica	0.5215	118.364 KB	13	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJDU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00026438 SAMN37820395-rid19927273.denovo.01, whole genome shotgun sequence	190573..191010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJDU010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00026438 SAMN37820395-rid19927273.guided.18, whole genome shotgun sequence	3162..3599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032924925.1_PDT001950797.1_genomic.fna	Salmonella_enterica	0.5217	126.121 KB	12	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_1203	7555	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_1203	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJDR010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00026360 SAMN37820391-rid19920443.denovo.13, whole genome shotgun sequence	40515..40952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJDR010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00026360 SAMN37820391-rid19920443.guided.37, whole genome shotgun sequence	14816..15253	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032924945.1_PDT001950794.1_genomic.fna	Salmonella_enterica	0.5212	170.504 KB	8	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,sul2,sul2,dfrA14,dfrA14	2	gyrA_p.S83Y,parC_p.T57S	3	Col156,Col440II,IncN	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJDT010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021233 SAMN37820196-rid19923233.denovo.10, whole genome shotgun sequence	83105..83542	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQJDT010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021233 SAMN37820196-rid19923233.denovo.49, whole genome shotgun sequence	2908..3744	Streptomycin	M28829	aph(3'')-Ib	100	529/804	DAQJDT010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021233 SAMN37820196-rid19923233.denovo.49, whole genome shotgun sequence	1537..2065	Streptomycin	AF321551	aph(3'')-Ib	99.2957746478873	284/804	DAQJDT010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021233 SAMN37820196-rid19923233.denovo.49, whole genome shotgun sequence	2627..2908	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	DAQJDT010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021233 SAMN37820196-rid19923233.guided.41, whole genome shotgun sequence	4875..5312	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQJDT010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021233 SAMN37820196-rid19923233.guided.50, whole genome shotgun sequence	2710..3546	Streptomycin	M28829	aph(3'')-Ib	100	529/804	DAQJDT010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021233 SAMN37820196-rid19923233.guided.50, whole genome shotgun sequence	1339..1867	Streptomycin	AF321551	aph(3'')-Ib	99.2957746478873	284/804	DAQJDT010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021233 SAMN37820196-rid19923233.guided.50, whole genome shotgun sequence	2429..2710	Streptomycin	AF321551	sul2	100	816/816	DAQJDT010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021233 SAMN37820196-rid19923233.denovo.49, whole genome shotgun sequence	661..1476	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQJDT010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021233 SAMN37820196-rid19923233.guided.50, whole genome shotgun sequence	463..1278	Sulfamethoxazole	AY034138	dfrA14	100	474/474	DAQJDT010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021233 SAMN37820196-rid19923233.denovo.49, whole genome shotgun sequence	2085..2558	Trimethoprim	AF393510	dfrA14	100	474/474	DAQJDT010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021233 SAMN37820196-rid19923233.guided.50, whole genome shotgun sequence	1887..2360	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col156	95.45	154 / 154	DAQJDT010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021233 SAMN37820196-rid19923233.denovo.56, whole genome shotgun sequence	483..636	enterobacteriales	Col440II	97.87	282 / 282	DAQJDT010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021233 SAMN37820196-rid19923233.denovo.53, whole genome shotgun sequence	2485..2766		enterobacteriales	IncN	100	460 / 514	DAQJDT010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021233 SAMN37820196-rid19923233.denovo.54, whole genome shotgun sequence	1..460																																									avrA	DAQJDT010000006.1	116636..117505	98.966	870	0						
GCA_032924965.1_PDT001950788.1_genomic.fna	Salmonella_enterica	0.5222	103.944 KB	14	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJDV010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00026978 SAMN37820398-rid19925813.denovo.05, whole genome shotgun sequence	145232..145669	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJDV010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00026978 SAMN37820398-rid19925813.guided.28, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJDV010000032.1	39591..40460	99.77	870	0						
GCA_032924975.1_PDT001950790.1_genomic.fna	Salmonella_enterica	0.5214	140.832 KB	9	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJDW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00026783 SAMN37820396-rid19921803.denovo.01, whole genome shotgun sequence	454784..455221	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJDW010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00026783 SAMN37820396-rid19921803.guided.15, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032925005.1_PDT001950786.1_genomic.fna	Salmonella_enterica	0.5183	341.017 KB	6	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJDX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00027038 SAMN37820400-rid19927623.denovo.01, whole genome shotgun sequence	145257..145694	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJDX010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00027038 SAMN37820400-rid19927623.guided.23, whole genome shotgun sequence	33523..33960	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJDX010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00027038 SAMN37820400-rid19927623.denovo.10, whole genome shotgun sequence	89254..89580	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJDX010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00027038 SAMN37820400-rid19927623.denovo.10, whole genome shotgun sequence	104444..105073																																																avrA	DAQJDX010000022.1	39571..40440	99.77	870	0						
GCA_032925025.1_PDT001950781.1_genomic.fna	Salmonella_enterica	0.5212	158.291 KB	11	aroC_4,dnaN_164,hemD_134,hisD_195,purE_8,sucA_105,thrA_22	2657	8:z10:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_4	dnaN	100	100	dnaN_164	hemD	100	100	hemD_134	hisD	100	100	hisD_195	purE	100	100	purE_8	sucA	100	100	sucA_105	thrA	100	100	thrA_22	8	z10	z6	Salmonella enterica subspecies enterica (subspecies I)	Molade or Wippra	The predicted serotypes share the same general formula: 8:z10:z6 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJEA010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Molade isolate AUSMDU00027099 SAMN37820404-rid19927263.denovo.27, whole genome shotgun sequence	12514..12951	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJEA010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Molade isolate AUSMDU00027099 SAMN37820404-rid19927263.guided.17, whole genome shotgun sequence	16437..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.74	114 / 114	DAQJEA010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Molade isolate AUSMDU00027099 SAMN37820404-rid19927263.denovo.56, whole genome shotgun sequence	1876..1989																																																						avrA	DAQJEA010000013.1	35330..36199	99.195	870	0						
GCA_032925035.1_PDT001950784.1_genomic.fna	Salmonella_enterica	0.522	121.43 KB	14	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJDY010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00027079 SAMN37820402-rid19923213.denovo.15, whole genome shotgun sequence	12533..12970	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJDY010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00027079 SAMN37820402-rid19923213.guided.45, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJDY010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00027079 SAMN37820402-rid19923213.denovo.62, whole genome shotgun sequence	1189..1298																																																																	
GCA_032925065.1_PDT001950780.1_genomic.fna	Salmonella_enterica	0.5233	151.124 KB	11	aroC_397,dnaN_380,hemD_121,hisD_99,purE_411,sucA_9,thrA_406	1370	-:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_397	dnaN	100	100	dnaN_380	hemD	100	100	hemD_121	hisD	100	100	hisD_99	purE	100	100	purE_411	sucA	100	100	sucA_9	thrA	100	100	thrA_406	-	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:a:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJDZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oslo isolate AUSMDU00027120 SAMN37820405-rid19921783.denovo.01, whole genome shotgun sequence	153844..154281	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJDZ010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oslo isolate AUSMDU00027120 SAMN37820405-rid19921783.guided.40, whole genome shotgun sequence	16437..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQJDZ010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oslo isolate AUSMDU00027120 SAMN37820405-rid19921783.denovo.58, whole genome shotgun sequence	400..530																																																						avrA	DAQJDZ010000010.1	121655..122524	99.77	870	0						
GCA_032925085.1_PDT001950778.1_genomic.fna	Salmonella_enterica	0.52	123.015 KB	13	aroC_46,dnaN_430,hemD_18,hisD_130,purE_8,sucA_594,thrA_115	3134	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_430	hemD	100	100	hemD_18	hisD	100	100	hisD_130	purE	100	100	purE_8	sucA	100	100	sucA_594	thrA	100	100	thrA_115	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJED010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00027154 SAMN37820407-rid19924483.denovo.001, whole genome shotgun sequence	175362..175799	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJED010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00027154 SAMN37820407-rid19924483.guided.017, whole genome shotgun sequence	9823..10260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJED010000005.1	114498..115367	99.54	870	0						
GCA_032925105.1_PDT001950779.1_genomic.fna	Salmonella_enterica	0.5204	271.6 KB	7	aroC_41,dnaN_13,hemD_10,hisD_12,purE_5,sucA_19,thrA_12	3211	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(BS512),IncI(Gamma)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_13	hemD	100	100	hemD_10	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJEC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00027149 SAMN37820406-rid19923203.denovo.01, whole genome shotgun sequence	155990..156427	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJEC010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00027149 SAMN37820406-rid19923203.guided.16, whole genome shotgun sequence	15567..16004	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(BS512)	100	233 / 233	DAQJEC010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00027149 SAMN37820406-rid19923203.denovo.44, whole genome shotgun sequence	1151..1383	enterobacteriales	IncI(Gamma)	97.81	137 / 141	DAQJEC010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00027149 SAMN37820406-rid19923203.denovo.20, whole genome shotgun sequence	88964..89100																																																avrA	DAQJEC010000003.1	182830..183699	99.77	870	0						
GCA_032925125.1_PDT001950775.1_genomic.fna	Salmonella_enterica	0.5219	130.028 KB	13	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJEE010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00027300 SAMN37820410-rid19920393.denovo.10, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJEE010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00027300 SAMN37820410-rid19920393.guided.46, whole genome shotgun sequence	9840..10277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJEE010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00027300 SAMN37820410-rid19920393.denovo.61, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJEE010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00027300 SAMN37820410-rid19920393.denovo.62, whole genome shotgun sequence	3345..3457																																																											
GCA_032925145.1_PDT001950776.1_genomic.fna	Salmonella_enterica	0.5208	174.499 KB	9	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJEB010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00027296 SAMN37820409-rid19923823.denovo.13, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJEB010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00027296 SAMN37820409-rid19923823.guided.36, whole genome shotgun sequence	2305..2742	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	DAQJEB010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00027296 SAMN37820409-rid19923823.denovo.45, whole genome shotgun sequence	965..1118																																																																	
GCA_032925165.1_PDT001950774.1_genomic.fna	Salmonella_enterica	0.5213	96.165 KB	18	aroC_313,dnaN_652,hemD_250,hisD_236,purE_5,sucA_109,thrA_1	4025	-:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_313	dnaN	100	100	dnaN_652	hemD	100	100	hemD_250	hisD	100	100	hisD_236	purE	100	100	purE_5	sucA	100	100	sucA_109	thrA	100	100	thrA_1	-	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:m,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJEF010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Monschaui isolate AUSMDU00030230 SAMN37820497-rid19921773.denovo.25, whole genome shotgun sequence	20884..21321	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJEF010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Monschaui isolate AUSMDU00030230 SAMN37820497-rid19921773.guided.50, whole genome shotgun sequence	15676..16113	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032925185.1_PDT001950771.1_genomic.fna	Salmonella_enterica	0.5204	99.526 KB	16	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJEI010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030265 SAMN37820500-rid19927253.denovo.23, whole genome shotgun sequence	52270..52707	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJEI010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030265 SAMN37820500-rid19927253.guided.32, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJEI010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030265 SAMN37820500-rid19927253.denovo.74, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJEI010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030265 SAMN37820500-rid19927253.denovo.75, whole genome shotgun sequence	3345..3457																																																											
GCA_032925205.1_PDT001950772.1_genomic.fna	Salmonella_enterica	0.5205	128.551 KB	14	aroC_140,dnaN_392,hemD_40,hisD_11,purE_140,sucA_180,thrA_18	1542	3,10:z10:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(S),IncFII(SARC14)	aroC	100	100	aroC_140	dnaN	100	100	dnaN_392	hemD	100	100	hemD_40	hisD	100	100	hisD_11	purE	100	100	purE_140	sucA	100	100	sucA_180	thrA	100	100	thrA_18	3,10	z10	1,5	Salmonella enterica subspecies enterica (subspecies I)	Lexington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJEH010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lexington isolate AUSMDU00030264 SAMN37820499-rid19920383.denovo.06, whole genome shotgun sequence	28084..28521	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJEH010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lexington isolate AUSMDU00030264 SAMN37820499-rid19920383.guided.40, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	98.42	253 / 262	DAQJEH010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lexington isolate AUSMDU00030264 SAMN37820499-rid19920383.denovo.36, whole genome shotgun sequence	23970..24222	enterobacteriales	IncFII(SARC14)	100	445 / 445	DAQJEH010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lexington isolate AUSMDU00030264 SAMN37820499-rid19920383.denovo.36, whole genome shotgun sequence	24482..24926																																																											
GCA_032925225.1_PDT001950773.1_genomic.fna	Salmonella_enterica	0.5222	99.488 KB	16	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJEG010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030260 SAMN37820498-rid19925793.denovo.007, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJEG010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030260 SAMN37820498-rid19925793.guided.029, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJEG010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030260 SAMN37820498-rid19925793.denovo.079, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJEG010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030260 SAMN37820498-rid19925793.denovo.080, whole genome shotgun sequence	3345..3457																																																											
GCA_032925245.1_PDT001950769.1_genomic.fna	Salmonella_enterica	0.5196	260.589 KB	7	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJEM010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00030278 SAMN37820502-rid19923193.denovo.03, whole genome shotgun sequence	265798..266235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJEM010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00030278 SAMN37820502-rid19923193.guided.21, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJEM010000006.1	152770..153639	99.54	870	0						
GCA_032925265.1_PDT001950770.1_genomic.fna	Salmonella_enterica	0.5217	164.788 KB	9	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJEJ010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030270 SAMN37820501-rid19920373.denovo.27, whole genome shotgun sequence	12499..12936	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJEJ010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030270 SAMN37820501-rid19920373.guided.28, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJEJ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030270 SAMN37820501-rid19920373.denovo.49, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJEJ010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030270 SAMN37820501-rid19920373.denovo.50, whole genome shotgun sequence	3345..3457																																																											
GCA_032925285.1_PDT001950767.1_genomic.fna	Salmonella_enterica	0.5218	146.574 KB	12	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJEL010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00021915 SAMN37820225-rid19923183.denovo.12, whole genome shotgun sequence	62427..62864	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJEL010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00021915 SAMN37820225-rid19923183.guided.37, whole genome shotgun sequence	14707..15144	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJEL010000011.1	149620..150489	99.77	870	0						
GCA_032925305.1_PDT001950765.1_genomic.fna	Salmonella_enterica	0.5211	232.775 KB	8	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJEN010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030306 SAMN37820505-rid19920363.denovo.02, whole genome shotgun sequence	136996..137433	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJEN010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030306 SAMN37820505-rid19920363.guided.19, whole genome shotgun sequence	15725..16162	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJEN010000009.1	121031..121897	99.08	870	0						
GCA_032925325.1_PDT001950768.1_genomic.fna	Salmonella_enterica	0.5219	212.86 KB	8	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJEK010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030295 SAMN37820503-rid19924473.denovo.04, whole genome shotgun sequence	145223..145660	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJEK010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030295 SAMN37820503-rid19924473.guided.27, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJEK010000013.1	39589..40457	99.655	870	0						
GCA_032925345.1_PDT001950763.1_genomic.fna	Salmonella_enterica	0.5224	107.265 KB	13	aroC_2,dnaN_71,hemD_41,hisD_17,purE_370,sucA_19,thrA_12	2172	-:i:1,5	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_71	hemD	100	100	hemD_41	hisD	100	100	hisD_17	purE	100	100	purE_370	sucA	100	100	sucA_19	thrA	100	100	thrA_12	-	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJEQ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lansing isolate AUSMDU00030348 SAMN37820507-rid19925783.denovo.17, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJEQ010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lansing isolate AUSMDU00030348 SAMN37820507-rid19925783.guided.22, whole genome shotgun sequence	42418..42855	Amikacin, Tobramycin	NC_003197	fosA7	99.76	423/423	DAQJEQ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lansing isolate AUSMDU00030348 SAMN37820507-rid19925783.denovo.03, whole genome shotgun sequence	133536..133958	Fosfomycin	LAPJ01000014	fosA7	99.76	423/423	DAQJEQ010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lansing isolate AUSMDU00030348 SAMN37820507-rid19925783.guided.70, whole genome shotgun sequence	88..510	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJEQ010000006.1	106318..107186	99.655	870	0						
GCA_032925365.1_PDT001950764.1_genomic.fna	Salmonella_enterica	0.5195	102.177 KB	16	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJEO010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00030336 SAMN37820506-rid19921763.denovo.012, whole genome shotgun sequence	52354..52791	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJEO010000132.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00030336 SAMN37820506-rid19921763.guided.024, whole genome shotgun sequence	7390..7827	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJEO010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00030336 SAMN37820506-rid19921763.denovo.086, whole genome shotgun sequence	547..675	enterobacteriales	Col440I	94.74	114 / 114	DAQJEO010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00030336 SAMN37820506-rid19921763.denovo.089, whole genome shotgun sequence	787..900																																																avrA	DAQJEO010000016.1	99051..99920	98.966	870	0						
GCA_032925385.1_PDT001950762.1_genomic.fna	Salmonella_enterica	0.5212	140.302 KB	10	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJEP010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030349 SAMN37820508-rid19921753.denovo.02, whole genome shotgun sequence	52338..52775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJEP010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030349 SAMN37820508-rid19921753.guided.43, whole genome shotgun sequence	15161..15598	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJEP010000013.1	39591..40457	99.08	870	0						
GCA_032925405.1_PDT001950761.1_genomic.fna	Salmonella_enterica	0.5216	140.465 KB	12	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJER010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030367 SAMN37820509-rid19927243.denovo.25, whole genome shotgun sequence	52288..52725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJER010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030367 SAMN37820509-rid19927243.guided.22, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJER010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030367 SAMN37820509-rid19927243.denovo.59, whole genome shotgun sequence	1189..1298																																																																	
GCA_032925425.1_PDT001950760.1_genomic.fna	Salmonella_enterica	0.5216	144.746 KB	11	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJEU010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030371 SAMN37820510-rid19920353.denovo.07, whole genome shotgun sequence	20902..21339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJEU010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030371 SAMN37820510-rid19920353.guided.12, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJEU010000013.1	39483..40351	99.655	870	0						
GCA_032925445.1_PDT001950757.1_genomic.fna	Salmonella_enterica	0.523	155.176 KB	9	aroC_2,dnaN_71,hemD_41,hisD_17,purE_370,sucA_19,thrA_12	2172	-:i:1,5	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_71	hemD	100	100	hemD_41	hisD	100	100	hisD_17	purE	100	100	purE_370	sucA	100	100	sucA_19	thrA	100	100	thrA_12	-	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJES010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lansing isolate AUSMDU00030415 SAMN37820513-rid19923163.denovo.01, whole genome shotgun sequence	381467..381904	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJES010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lansing isolate AUSMDU00030415 SAMN37820513-rid19923163.guided.33, whole genome shotgun sequence	31227..31664	Amikacin, Tobramycin	NC_003197	fosA7	99.76	423/423	DAQJES010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lansing isolate AUSMDU00030415 SAMN37820513-rid19923163.denovo.02, whole genome shotgun sequence	131693..132115	Fosfomycin	LAPJ01000014	fosA7	99.76	423/423	DAQJES010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lansing isolate AUSMDU00030415 SAMN37820513-rid19923163.guided.20, whole genome shotgun sequence	83646..84068	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJES010000007.1	106488..107356	99.655	870	0						
GCA_032925465.1_PDT001950755.1_genomic.fna	Salmonella_enterica	0.5216	207.012 KB	7	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJEV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030432 SAMN37820514-rid19920343.denovo.01, whole genome shotgun sequence	370178..370615	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJEV010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030432 SAMN37820514-rid19920343.guided.22, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJEV010000005.1	158660..159526	99.08	870	0						
GCA_032925475.1_PDT001950754.1_genomic.fna	Salmonella_enterica	0.5223	203.326 KB	7	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJEW010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030434 SAMN37820515-rid19921743.denovo.02, whole genome shotgun sequence	145368..145805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJEW010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030434 SAMN37820515-rid19921743.guided.25, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJEW010000008.1	107669..108538	99.655	870	0						
GCA_032925505.1_PDT001950756.1_genomic.fna	Salmonella_enterica	0.5213	170.062 KB	10	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJET010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00021924 SAMN37820226-rid19923803.denovo.01, whole genome shotgun sequence	159473..159910	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJET010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00021924 SAMN37820226-rid19923803.guided.39, whole genome shotgun sequence	14151..14588	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJET010000006.1	114923..115792	99.54	870	0						
GCA_032925525.1_PDT001950752.1_genomic.fna	Salmonella_enterica	0.5222	166.168 KB	10	aroC_2,dnaN_71,hemD_41,hisD_17,purE_370,sucA_19,thrA_12	2172	-:i:1,5	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_71	hemD	100	100	hemD_41	hisD	100	100	hisD_17	purE	100	100	purE_370	sucA	100	100	sucA_19	thrA	100	100	thrA_12	-	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJEY010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lansing isolate AUSMDU00030466 SAMN37820517-rid19921733.denovo.05, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJEY010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lansing isolate AUSMDU00030466 SAMN37820517-rid19921733.guided.23, whole genome shotgun sequence	42418..42855	Amikacin, Tobramycin	NC_003197	fosA7	99.76	423/423	DAQJEY010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lansing isolate AUSMDU00030466 SAMN37820517-rid19921733.denovo.02, whole genome shotgun sequence	309680..310102	Fosfomycin	LAPJ01000014	fosA7	99.76	423/423	DAQJEY010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lansing isolate AUSMDU00030466 SAMN37820517-rid19921733.guided.48, whole genome shotgun sequence	9594..10016	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJEY010000004.1	125828..126696	99.655	870	0						
GCA_032925545.1_PDT001950753.1_genomic.fna	Salmonella_enterica	0.522	144.466 KB	12	aroC_16,dnaN_16,hemD_20,hisD_602,purE_8,sucA_12,thrA_18	2177	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_602	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJEX010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030460 SAMN37820516-rid19925773.denovo.25, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJEX010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030460 SAMN37820516-rid19925773.guided.45, whole genome shotgun sequence	5387..5824	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJEX010000015.1	39577..40443	99.08	870	0						
GCA_032925585.1_PDT001950749.1_genomic.fna	Salmonella_enterica	0.5224	114.5 KB	15	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJFA010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030500 SAMN37820520-rid19923153.denovo.02, whole genome shotgun sequence	145326..145763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJFA010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030500 SAMN37820520-rid19923153.guided.35, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJFA010000013.1	43305..44174	99.655	870	0						
GCA_032925605.1_PDT001950748.1_genomic.fna	Salmonella_enterica	0.5224	191.051 KB	9	aroC_5,dnaN_14,hemD_6,hisD_12,purE_5,sucA_14,thrA_58	166	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_14	thrA	100	100	thrA_58	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJFB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00030534 SAMN37820521-rid19924453.denovo.01, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQJFB010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00030534 SAMN37820521-rid19924453.guided.27, whole genome shotgun sequence	24985..25422	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJFB010000014.1	39484..40353	99.655	870	0						
GCA_032925625.1_PDT001950751.1_genomic.fna	Salmonella_enterica	0.5225	146.502 KB	10	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJEZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030478 SAMN37820518-rid19927233.denovo.01, whole genome shotgun sequence	223556..223993	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJEZ010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030478 SAMN37820518-rid19927233.guided.24, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJEZ010000012.1	43536..44402	99.08	870	0						
GCA_032925645.1_PDT001950750.1_genomic.fna	Salmonella_enterica	0.5224	152.34 KB	10	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJFC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030481 SAMN37820519-rid19920333.denovo.01, whole genome shotgun sequence	156371..156808	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJFC010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030481 SAMN37820519-rid19920333.guided.31, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJFC010000013.1	39545..40414	99.655	870	0						
GCA_032925665.1_PDT001950747.1_genomic.fna	Salmonella_enterica	0.5216	78.114 KB	18	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	-:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	-	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJFD010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00030747 SAMN37820522-rid19923143.denovo.022, whole genome shotgun sequence	12528..12965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJFD010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00030747 SAMN37820522-rid19923143.guided.046, whole genome shotgun sequence	16429..16866	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQJFD010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00030747 SAMN37820522-rid19923143.denovo.005, whole genome shotgun sequence	11093..11516	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQJFD010000127.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00030747 SAMN37820522-rid19923143.guided.084, whole genome shotgun sequence	4885..5308	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJFD010000009.1	124900..125769	99.31	870	0						
GCA_032925685.1_PDT001950746.1_genomic.fna	Salmonella_enterica	0.5221	115.496 KB	12	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJFE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030754 SAMN37820523-rid19923793.denovo.01, whole genome shotgun sequence	20887..21324	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJFE010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030754 SAMN37820523-rid19923793.guided.32, whole genome shotgun sequence	14868..15305	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJFE010000006.1	124981..125847	99.08	870	0						
GCA_032925705.1_PDT001950745.1_genomic.fna	Salmonella_enterica	0.5215	113.203 KB	10	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	1	ColpVC	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJFF010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00021925 SAMN37820227-rid19921723.denovo.25, whole genome shotgun sequence	52279..52716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJFF010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00021925 SAMN37820227-rid19921723.guided.53, whole genome shotgun sequence	12735..13172	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQJFF010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00021925 SAMN37820227-rid19921723.denovo.68, whole genome shotgun sequence	408..1268	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJFF010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00021925 SAMN37820227-rid19921723.guided.67, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	ColpVC	98.96	193 / 193	DAQJFF010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00021925 SAMN37820227-rid19921723.denovo.69, whole genome shotgun sequence	805..997																																																						avrA	DAQJFF010000008.1	39431..40300	99.31	870	0						
GCA_032925725.1_PDT001950744.1_genomic.fna	Salmonella_enterica	0.5222	80.907 KB	19	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	-:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	-	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJFG010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030756 SAMN37820524-rid19921713.denovo.036, whole genome shotgun sequence	15579..16016	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJFG010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030756 SAMN37820524-rid19921713.guided.015, whole genome shotgun sequence	32328..32765	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJFG010000043.1	43296..44154	98.506	870	0						
GCA_032925745.1_PDT001950743.1_genomic.fna	Salmonella_enterica	0.5217	143.346 KB	12	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJFI010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030766 SAMN37820525-rid19925763.denovo.12, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJFI010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030766 SAMN37820525-rid19925763.guided.26, whole genome shotgun sequence	34208..34645	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJFI010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030766 SAMN37820525-rid19925763.denovo.53, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJFI010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00030766 SAMN37820525-rid19925763.denovo.54, whole genome shotgun sequence	3345..3457																																																											
GCA_032925765.1_PDT001950741.1_genomic.fna	Salmonella_enterica	0.5211	127.281 KB	12	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJFK010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00022191 SAMN37820236-rid19927223.denovo.06, whole genome shotgun sequence	65149..65586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJFK010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00022191 SAMN37820236-rid19927223.guided.24, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032925785.1_PDT001950742.1_genomic.fna	Salmonella_enterica	0.5221	118.065 KB	13	aroC_14,dnaN_210,hemD_8,hisD_14,purE_38,sucA_19,thrA_102	1792	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col156,ColpVC	aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	100	100	hemD_8	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJFH010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00035014 SAMN37820613-rid19921703.denovo.02, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJFH010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00035014 SAMN37820613-rid19921703.guided.52, whole genome shotgun sequence	15476..15913	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	DAQJFH010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00035014 SAMN37820613-rid19921703.denovo.61, whole genome shotgun sequence	792..945	enterobacteriales	ColpVC	98.96	193 / 193	DAQJFH010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00035014 SAMN37820613-rid19921703.denovo.64, whole genome shotgun sequence	519..711																																																avrA	DAQJFH010000010.1	60940..61809	99.54	870	0						
GCA_032925805.1_PDT001950740.1_genomic.fna	Salmonella_enterica	0.5221	256.831 KB	8	aroC_15,dnaN_199,hemD_283,hisD_43,purE_115,sucA_162,thrA_483	1994	7:j:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	Col(pHAD28),IncR	aroC	100	100	aroC_15	dnaN	100	100	dnaN_199	hemD	100	100	hemD_283	hisD	100	100	hisD_43	purE	100	100	purE_115	sucA	100	100	sucA_162	thrA	100	100	thrA_483	7	j	1,5	Salmonella enterica subspecies enterica (subspecies I)	I 7:j:1,5	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJFJ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Isangi isolate AUSMDU00035038 SAMN37820614-rid19920323.denovo.09, whole genome shotgun sequence	100217..100654	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQJFJ010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Isangi isolate AUSMDU00035038 SAMN37820614-rid19920323.guided.32, whole genome shotgun sequence	24969..25406	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJFJ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Isangi isolate AUSMDU00035038 SAMN37820614-rid19920323.denovo.53, whole genome shotgun sequence	547..675	enterobacteriales	IncR	100	251 / 251	DAQJFJ010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Isangi isolate AUSMDU00035038 SAMN37820614-rid19920323.denovo.28, whole genome shotgun sequence	38074..38324																																																											
GCA_032925815.1_PDT001950739.1_genomic.fna	Salmonella_enterica	0.5219	103.639 KB	12	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJFL010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00035257 SAMN37820615-rid19923133.denovo.25, whole genome shotgun sequence	11351..11788	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJFL010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00035257 SAMN37820615-rid19923133.guided.48, whole genome shotgun sequence	14150..14587	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJFL010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00035257 SAMN37820615-rid19923133.denovo.69, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJFL010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00035257 SAMN37820615-rid19923133.denovo.72, whole genome shotgun sequence	3345..3457																																																											
GCA_032925865.1_PDT001950737.1_genomic.fna	Salmonella_enterica	0.5235	119.234 KB	13	aroC_397,dnaN_380,hemD_121,hisD_99,purE_411,sucA_9,thrA_406	1370	-:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_397	dnaN	100	100	dnaN_380	hemD	100	100	hemD_121	hisD	100	100	hisD_99	purE	100	100	purE_411	sucA	100	100	sucA_9	thrA	100	100	thrA_406	-	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:a:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJFN010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oslo isolate AUSMDU00035292 SAMN37820617-rid19923123.denovo.05, whole genome shotgun sequence	52468..52905	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJFN010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oslo isolate AUSMDU00035292 SAMN37820617-rid19923123.guided.50, whole genome shotgun sequence	16437..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJFN010000009.1	121554..122423	99.77	870	0						
GCA_032925885.1_PDT001950736.1_genomic.fna	Salmonella_enterica	0.5225	131.092 KB	11	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJFS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00035410 SAMN37820618-rid19927213.denovo.01, whole genome shotgun sequence	156367..156804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJFS010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00035410 SAMN37820618-rid19927213.guided.39, whole genome shotgun sequence	24988..25425	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJFS010000012.1	39581..40450	99.77	870	0						
GCA_032925905.1_PDT001950733.1_genomic.fna	Salmonella_enterica	0.522	136.117 KB	12	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJFQ010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00035413 SAMN37820621-rid19925743.denovo.18, whole genome shotgun sequence	52168..52605	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJFQ010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00035413 SAMN37820621-rid19925743.guided.45, whole genome shotgun sequence	13722..14159	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJFQ010000003.1	147971..148837	99.08	870	0						
GCA_032925925.1_PDT001950732.1_genomic.fna	Salmonella_enterica	0.5206	251.765 KB	7	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJFR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00035542 SAMN37820622-rid19921683.denovo.01, whole genome shotgun sequence	157420..157857	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJFR010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00035542 SAMN37820622-rid19921683.guided.27, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJFR010000002.1	114944..115813	99.54	870	0						
GCA_032925945.1_PDT001950731.1_genomic.fna	Salmonella_enterica	0.5211	194.332 KB	8	aroC_41,dnaN_13,hemD_10,hisD_12,purE_5,sucA_19,thrA_12	3211	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156,Col156	aroC	100	100	aroC_41	dnaN	100	100	dnaN_13	hemD	100	100	hemD_10	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJFP010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00035641 SAMN37820623-rid19927193.denovo.16, whole genome shotgun sequence	12518..12955	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJFP010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00035641 SAMN37820623-rid19927193.guided.29, whole genome shotgun sequence	19765..20202	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	DAQJFP010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00035641 SAMN37820623-rid19927193.denovo.49, whole genome shotgun sequence	967..1118	enterobacteriales	Col156	96.1	154 / 154	DAQJFP010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00035641 SAMN37820623-rid19927193.denovo.50, whole genome shotgun sequence	483..636																																																avrA	DAQJFP010000005.1	141757..142626	99.77	870	0						
GCA_032925965.1_PDT001950729.1_genomic.fna	Salmonella_enterica	0.5217	161.318 KB	11	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJFT010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00035696 SAMN37820624-rid19927183.denovo.02, whole genome shotgun sequence	223675..224112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJFT010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00035696 SAMN37820624-rid19927183.guided.19, whole genome shotgun sequence	34203..34640	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJFT010000011.1	124705..125571	99.08	870	0						
GCA_032925985.1_PDT001950730.1_genomic.fna	Salmonella_enterica	0.5217	96.684 KB	16	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJFO010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00022198 SAMN37820237-rid19920313.denovo.02, whole genome shotgun sequence	65149..65586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJFO010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00022198 SAMN37820237-rid19920313.guided.46, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032926005.1_PDT001950728.1_genomic.fna	Salmonella_enterica	0.5218	129.231 KB	12	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJFU010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00035697 SAMN37820625-rid19924443.denovo.13, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJFU010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00035697 SAMN37820625-rid19924443.guided.30, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJFU010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00035697 SAMN37820625-rid19924443.denovo.57, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJFU010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00035697 SAMN37820625-rid19924443.denovo.59, whole genome shotgun sequence	3345..3457																																																											
GCA_032926025.1_PDT001950727.1_genomic.fna	Salmonella_enterica	0.5216	63.358 KB	27	aroC_117,dnaN_295,hemD_533,hisD_100,purE_38,sucA_9,thrA_303	3348	9:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_117	dnaN	100	100	dnaN_295	hemD	100	100	hemD_533	hisD	100	100	hisD_100	purE	100	100	purE_38	sucA	100	100	sucA_9	thrA	100	100	thrA_303	9	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Pensacola		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQJFV010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Pensacola isolate AUSMDU00035720 SAMN37820626-rid19923113.denovo.058, whole genome shotgun sequence	14114..14551	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQJFV010000153.1 TPA_asm: Salmonella enterica subsp. enterica serovar Pensacola isolate AUSMDU00035720 SAMN37820626-rid19923113.guided.038, whole genome shotgun sequence	33560..33997	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.7	644 / 643	DAQJFV010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Pensacola isolate AUSMDU00035720 SAMN37820626-rid19923113.denovo.040, whole genome shotgun sequence	28602..29244																																																						avrA	DAQJFV010000003.1	94265..95134	99.08	870	0						
GCA_032926045.1_PDT001950726.1_genomic.fna	Salmonella_enterica	0.5209	122.559 KB	10	aroC_117,dnaN_295,hemD_533,hisD_100,purE_38,sucA_9,thrA_303	3348	9:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_117	dnaN	100	100	dnaN_295	hemD	100	100	hemD_533	hisD	100	100	hisD_100	purE	100	100	purE_38	sucA	100	100	sucA_9	thrA	100	100	thrA_303	9	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Pensacola		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQJFY010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Pensacola isolate AUSMDU00035759 SAMN37820627-rid19927173.denovo.06, whole genome shotgun sequence	42613..43050	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQJFY010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Pensacola isolate AUSMDU00035759 SAMN37820627-rid19927173.guided.28, whole genome shotgun sequence	44254..44691	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.7	644 / 643	DAQJFY010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Pensacola isolate AUSMDU00035759 SAMN37820627-rid19927173.denovo.32, whole genome shotgun sequence	28602..29244																																																						avrA	DAQJFY010000001.1	95818..96687	99.08	870	0						
GCA_032926065.1_PDT001950725.1_genomic.fna	Salmonella_enterica	0.5217	153.795 KB	10	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15!,purE_15!,sucA_20,thrA_12	Unknown	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15!	purE	100	100	purE_15!	sucA	100	100	sucA_20	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJFW010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00035779 SAMN37820628-rid19921673.denovo.21, whole genome shotgun sequence	20893..21330	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJFW010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00035779 SAMN37820628-rid19921673.guided.14, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJFW010000005.1	83491..84361	99.656	871	0						
GCA_032926085.1_PDT001950724.1_genomic.fna	Salmonella_enterica	0.5206	274.702 KB	7	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJFX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00035782 SAMN37820629-rid19927163.denovo.01, whole genome shotgun sequence	252684..253121	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJFX010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00035782 SAMN37820629-rid19927163.guided.30, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJFX010000008.1	140191..141060	99.54	870	0						
GCA_032926105.1_PDT001950722.1_genomic.fna	Salmonella_enterica	0.5229	54.17 KB	25	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJFZ010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00035790 SAMN37820631-rid19921663.denovo.067, whole genome shotgun sequence	11351..11788	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJFZ010000139.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00035790 SAMN37820631-rid19921663.guided.066, whole genome shotgun sequence	15475..15912	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJFZ010000035.1	43660..44530	99.656	871	0						
GCA_032926125.1_PDT001950723.1_genomic.fna	Salmonella_enterica	0.5214	167.363 KB	10	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJGA010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00035786 SAMN37820630-rid19925733.denovo.13, whole genome shotgun sequence	82975..83412	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJGA010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00035786 SAMN37820630-rid19925733.guided.15, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJGA010000008.1	158195..159061	99.08	870	0						
GCA_032926145.1_PDT001950720.1_genomic.fna	Salmonella_enterica	0.5211	60.456 KB	25	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJGC010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00035797 SAMN37820633-rid19920303.denovo.059, whole genome shotgun sequence	12499..12936	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJGC010000144.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00035797 SAMN37820633-rid19920303.guided.045, whole genome shotgun sequence	31845..32282	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJGC010000110.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00035797 SAMN37820633-rid19920303.denovo.113, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJGC010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00035797 SAMN37820633-rid19920303.denovo.114, whole genome shotgun sequence	3345..3457																																																											
GCA_032926165.1_PDT001950721.1_genomic.fna	Salmonella_enterica	0.5222	140.236 KB	11	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJGB010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00035793 SAMN37820632-rid19927613.denovo.07, whole genome shotgun sequence	15460..15897	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJGB010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00035793 SAMN37820632-rid19927613.guided.31, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJGB010000013.1	2257..3127	99.656	871	0						
GCA_032926185.1_PDT001950718.1_genomic.fna	Salmonella_enterica	0.5215	97.905 KB	18	aroC_16,dnaN_16,hemD_26,hisD_18,purE_8,sucA_12,thrA_18	51	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_26	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJGG010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00035806 SAMN37820634-rid19925723.denovo.04, whole genome shotgun sequence	20903..21340	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJGG010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00035806 SAMN37820634-rid19925723.guided.08, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJGG010000007.1	81536..82402	99.08	870	0						
GCA_032926205.1_PDT001950719.1_genomic.fna	Salmonella_enterica	0.521	199.167 KB	9	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJGD010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00022243 SAMN37820238-rid19927603.denovo.03, whole genome shotgun sequence	145180..145617	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQJGD010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00022243 SAMN37820238-rid19927603.guided.28, whole genome shotgun sequence	31018..31455	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJGD010000002.1	114664..115533	99.425	870	0						
GCA_032926225.1_PDT001950716.1_genomic.fna	Salmonella_enterica	0.5217	55.303 KB	31	aroC_161,dnaN_147,hemD_348,hisD_178,purE_155,sucA_12,thrA_142	2019	9:l,z13:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	pKPC-CAV1193	aroC	100	100	aroC_161	dnaN	100	100	dnaN_147	hemD	100	100	hemD_348	hisD	100	100	hisD_178	purE	100	100	purE_155	sucA	100	100	sucA_12	thrA	100	100	thrA_142	9	l,z13	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Napoli		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJGI010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Napoli isolate AUSMDU00035811 SAMN37820636-rid19927153.denovo.102, whole genome shotgun sequence	534..971	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJGI010000188.1 TPA_asm: Salmonella enterica subsp. enterica serovar Napoli isolate AUSMDU00035811 SAMN37820636-rid19927153.guided.101, whole genome shotgun sequence	574..1011	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	pKPC-CAV1193	98.69	612 / 612	DAQJGI010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Napoli isolate AUSMDU00035811 SAMN37820636-rid19927153.denovo.060, whole genome shotgun sequence	173..784																																																																	
GCA_032926245.1_PDT001950717.1_genomic.fna	Salmonella_enterica	0.5202	163.943 KB	9	aroC_13,dnaN_12,hemD_63,hisD_16,purE_13,sucA_16,thrA_4	437	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_63	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAQJGF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00035807 SAMN37820635-rid19923103.denovo.01, whole genome shotgun sequence	20876..21313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAQJGF010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00035807 SAMN37820635-rid19923103.guided.19, whole genome shotgun sequence	24946..25383	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJGF010000007.1	140379..141248	99.54	870	0						
GCA_032926265.1_PDT001950715.1_genomic.fna	Salmonella_enterica	0.522	167.384 KB	9	aroC_117,dnaN_14,hemD_23,hisD_127,purE_6,sucA_7,thrA_22	462	7:k:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_117	dnaN	100	100	dnaN_14	hemD	100	100	hemD_23	hisD	100	100	hisD_127	purE	100	100	purE_6	sucA	100	100	sucA_7	thrA	100	100	thrA_22	7	k	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Singapore		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJGE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00035853 SAMN37820637-rid19921653.denovo.01, whole genome shotgun sequence	484389..484826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJGE010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00035853 SAMN37820637-rid19921653.guided.35, whole genome shotgun sequence	16459..16896	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJGE010000010.1	121537..122406	99.77	870	0						
GCA_032926285.1_PDT001950714.1_genomic.fna	Salmonella_enterica	0.5204	317.73 KB	5	aroC_10,dnaN_7,hemD_21,hisD_1024,purE_15,sucA_12,thrA_12	4753	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_1024	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJGH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00035903 SAMN37820638-rid19927143.denovo.01, whole genome shotgun sequence	445155..445592	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJGH010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00035903 SAMN37820638-rid19927143.guided.20, whole genome shotgun sequence	44280..44717	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJGH010000007.1	114802..115670	99.31	870	0						
GCA_032926305.1_PDT001950713.1_genomic.fna	Salmonella_enterica	0.521	312.88 KB	6	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJGJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00035920 SAMN37820639-rid19925713.denovo.01, whole genome shotgun sequence	378335..378772	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJGJ010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00035920 SAMN37820639-rid19925713.guided.13, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032926345.1_PDT001950712.1_genomic.fna	Salmonella_enterica	0.5202	140.424 KB	13	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJGK010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00036071 SAMN37820640-rid19923093.denovo.16, whole genome shotgun sequence	12531..12968	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJGK010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00036071 SAMN37820640-rid19923093.guided.32, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJGK010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00036071 SAMN37820640-rid19923093.denovo.64, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJGK010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00036071 SAMN37820640-rid19923093.denovo.65, whole genome shotgun sequence	3345..3457																																																											
GCA_032926365.1_PDT001950709.1_genomic.fna	Salmonella_enterica	0.5214	224.599 KB	8	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJGM010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00038928 SAMN37820729-rid19927583.denovo.05, whole genome shotgun sequence	137415..137852	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJGM010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00038928 SAMN37820729-rid19927583.guided.14, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJGM010000002.1	125043..125909	99.08	870	0						
GCA_032926385.1_PDT001950711.1_genomic.fna	Salmonella_enterica	0.5208	189.665 KB	8	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJGL010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00036073 SAMN37820641-rid19927593.denovo.21, whole genome shotgun sequence	48294..48731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJGL010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00036073 SAMN37820641-rid19927593.guided.25, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJGL010000006.1	120886..121754	99.425	870	0						
GCA_032926405.1_PDT001950710.1_genomic.fna	Salmonella_enterica	0.5208	136.693 KB	12	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJGP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00038926 SAMN37820728-rid19920293.denovo.01, whole genome shotgun sequence	383389..383826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJGP010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00038926 SAMN37820728-rid19920293.guided.11, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJGP010000004.1	148817..149686	99.77	870	0						
GCA_032926425.1_PDT001950708.1_genomic.fna	Salmonella_enterica	0.5219	144.371 KB	13	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJGN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00038935 SAMN37820730-rid19925703.denovo.01, whole genome shotgun sequence	145242..145679	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJGN010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00038935 SAMN37820730-rid19925703.guided.37, whole genome shotgun sequence	9808..10245	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJGN010000003.1	83494..84364	99.656	871	0						
GCA_032926445.1_PDT001950706.1_genomic.fna	Salmonella_enterica	0.5211	205.886 KB	7	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJGQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00038971 SAMN37820732-rid19925693.denovo.01, whole genome shotgun sequence	12559..12996	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJGQ010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00038971 SAMN37820732-rid19925693.guided.28, whole genome shotgun sequence	14103..14540	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJGQ010000012.1	2258..3127	99.54	870	0						
GCA_032926465.1_PDT001950707.1_genomic.fna	Salmonella_enterica	0.5211	190.871 KB	11	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15!,purE_15!,sucA_20,thrA_12	Unknown	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15!	purE	100	100	purE_15!	sucA	100	100	sucA_20	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJGO010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00038969 SAMN37820731-rid19923083.denovo.02, whole genome shotgun sequence	134051..134488	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJGO010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00038969 SAMN37820731-rid19923083.guided.27, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJGO010000008.1	165037..165906	99.77	870	0						
GCA_032926485.1_PDT001950705.1_genomic.fna	Salmonella_enterica	0.5215	144.044 KB	10	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJGR010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00039064 SAMN37820733-rid19921643.denovo.04, whole genome shotgun sequence	221429..221866	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJGR010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00039064 SAMN37820733-rid19921643.guided.32, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQJGR010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00039064 SAMN37820733-rid19921643.denovo.20, whole genome shotgun sequence	15830..15971																																																																	
GCA_032926505.1_PDT001950704.1_genomic.fna	Salmonella_enterica	0.5212	370.915 KB	6	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJGS010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00022435 SAMN37820248-rid19927133.denovo.04, whole genome shotgun sequence	225992..226429	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJGS010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00022435 SAMN37820248-rid19927133.guided.17, whole genome shotgun sequence	17652..18089	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJGS010000008.1	166441..167310	99.77	870	0						
GCA_032926525.1_PDT001950701.1_genomic.fna	Salmonella_enterica	0.5204	308.451 KB	6	aroC_115,dnaN_75,hemD_8,hisD_115,purE_2,sucA_116,thrA_110	314	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_115	dnaN	100	100	dnaN_75	hemD	100	100	hemD_8	hisD	100	100	hisD_115	purE	100	100	purE_2	sucA	100	100	sucA_116	thrA	100	100	thrA_110	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJGV010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00039124 SAMN37820736-rid19924433.denovo.04, whole genome shotgun sequence	160209..160646	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQJGV010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00039124 SAMN37820736-rid19924433.guided.17, whole genome shotgun sequence	16445..16882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJGV010000014.1	39612..40481	98.851	870	0						
GCA_032926545.1_PDT001950703.1_genomic.fna	Salmonella_enterica	0.5215	374.29 KB	6	aroC_14,dnaN_210,hemD_8,hisD_14,purE_38,sucA_19,thrA_102	1792	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	100	100	hemD_8	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJGT010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00039072 SAMN37820734-rid19927123.denovo.04, whole genome shotgun sequence	173024..173461	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJGT010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00039072 SAMN37820734-rid19927123.guided.28, whole genome shotgun sequence	2511..2948	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJGT010000001.1	150892..151761	99.54	870	0						
GCA_032926565.1_PDT001950702.1_genomic.fna	Salmonella_enterica	0.52	197.594 KB	9	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(pHN7A8),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJGU010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00039123 SAMN37820735-rid19923073.denovo.06, whole genome shotgun sequence	145219..145656	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJGU010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00039123 SAMN37820735-rid19923073.guided.17, whole genome shotgun sequence	7543..7980	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(pHN7A8)	98.08	260 / 260	DAQJGU010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00039123 SAMN37820735-rid19923073.denovo.26, whole genome shotgun sequence	21534..21793	enterobacteriales	IncI2(Delta)	100	316 / 316	DAQJGU010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00039123 SAMN37820735-rid19923073.denovo.30, whole genome shotgun sequence	26445..26760																																																avrA	DAQJGU010000004.1	39553..40422	99.655	870	0						
GCA_032926585.1_PDT001950700.1_genomic.fna	Salmonella_enterica	0.5211	140.29 KB	9	aroC_48,dnaN_198,hemD_96,hisD_883,purE_219,sucA_119,thrA_118	3758	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_883	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJGW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00039135 SAMN37820737-rid19920283.denovo.01, whole genome shotgun sequence	366692..367129	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJGW010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00039135 SAMN37820737-rid19920283.guided.16, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.7	644 / 643	DAQJGW010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00039135 SAMN37820737-rid19920283.denovo.33, whole genome shotgun sequence	14468..15110																																																																	
GCA_032926605.1_PDT001950698.1_genomic.fna	Salmonella_enterica	0.5207	229.283 KB	7	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_430,thrA_8	1939	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_430	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJGX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00039147 SAMN37820739-rid19925683.denovo.01, whole genome shotgun sequence	377972..378409	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJGX010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00039147 SAMN37820739-rid19925683.guided.25, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	ColRNAI	90.08	131 / 130	DAQJGX010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00039147 SAMN37820739-rid19925683.denovo.40, whole genome shotgun sequence	3981..4111																																																																	
GCA_032926625.1_PDT001950699.1_genomic.fna	Salmonella_enterica	0.5215	158.044 KB	9	aroC_48,dnaN_198,hemD_96,hisD_883,purE_219,sucA_119,thrA_118	3758	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_883	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJGY010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00039136 SAMN37820738-rid19923783.denovo.05, whole genome shotgun sequence	51502..51939	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJGY010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00039136 SAMN37820738-rid19923783.guided.37, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.7	644 / 643	DAQJGY010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00039136 SAMN37820738-rid19923783.denovo.32, whole genome shotgun sequence	7535..8177																																																																	
GCA_032926645.1_PDT001950697.1_genomic.fna	Salmonella_enterica	0.521	205.876 KB	7	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJGZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00039150 SAMN37820740-rid19921633.denovo.01, whole genome shotgun sequence	84806..85243	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJGZ010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00039150 SAMN37820740-rid19921633.guided.16, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJGZ010000010.1	95123..95992	99.54	870	0						
GCA_032926665.1_PDT001950696.1_genomic.fna	Salmonella_enterica	0.5221	233.152 KB	7	aroC_5,dnaN_14,hemD_6,hisD_12,purE_5,sucA_14,thrA_58	166	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_14	thrA	100	100	thrA_58	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJHA010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00039452 SAMN37820741-rid19925673.denovo.08, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQJHA010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00039452 SAMN37820741-rid19925673.guided.24, whole genome shotgun sequence	24988..25425	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJHA010000014.1	39483..40352	99.655	870	0						
GCA_032926685.1_PDT001950695.1_genomic.fna	Salmonella_enterica	0.5215	247.342 KB	6	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJHB010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00039455 SAMN37820742-rid19920273.denovo.04, whole genome shotgun sequence	110092..110529	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJHB010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00039455 SAMN37820742-rid19920273.guided.28, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJHB010000007.1	125600..126469	99.54	870	0						
GCA_032926705.1_PDT001950694.1_genomic.fna	Salmonella_enterica	0.5217	327.464 KB	5	aroC_81,dnaN_283,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	909	7:y:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_81	dnaN	100	100	dnaN_283	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,2	Salmonella enterica subspecies enterica (subspecies I)	Richmond		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJHD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Richmond isolate AUSMDU00039456 SAMN37820743-rid19927113.denovo.01, whole genome shotgun sequence	145464..145901	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQJHD010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Richmond isolate AUSMDU00039456 SAMN37820743-rid19927113.guided.14, whole genome shotgun sequence	44311..44748	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	97.71	262 / 262	DAQJHD010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Richmond isolate AUSMDU00039456 SAMN37820743-rid19927113.denovo.18, whole genome shotgun sequence	55908..56167																																																						avrA	DAQJHD010000007.1	146810..147679	99.31	870	0						
GCA_032926725.1_PDT001950693.1_genomic.fna	Salmonella_enterica	0.52	168.88 KB	11	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	12	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA2,aadA1,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,floR,cmlA1,qnrS1,qnrS1,sul3,sul2,sul2,sul3,tet(A),tet(M),tet(A),tet(M),dfrA12,dfrA12	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQJHE010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.denovo.005, whole genome shotgun sequence	25609..26046	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	DAQJHE010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.denovo.051, whole genome shotgun sequence	564..1355	Spectinomycin, Streptomycin	JQ414041	aadA2	99.87	792/792	DAQJHE010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.denovo.051, whole genome shotgun sequence	2969..3760	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.03	438/438	DAQJHE010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.guided.041, whole genome shotgun sequence	14964..15401	Amikacin, Tobramycin	NC_003197	aadA2	99.87	792/792	DAQJHE010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.guided.055, whole genome shotgun sequence	1880..2671	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	DAQJHE010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.guided.066, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	blaTEM-1B	100	861/861	DAQJHE010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.denovo.079, whole genome shotgun sequence	145..1005	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJHE010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.guided.078, whole genome shotgun sequence	1010..1870	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.84	1260/1260	DAQJHE010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.denovo.051, whole genome shotgun sequence	1448..2707	Chloramphenicol	M64556	floR	98.11	1214/1215	DAQJHE010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.denovo.063, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.84	1260/1260	DAQJHE010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.guided.055, whole genome shotgun sequence	2933..4192	Chloramphenicol	M64556	floR	98.11	1214/1215	DAQJHE010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.guided.064, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.84	1260/1260	DAQJHE010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.guided.066, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	qnrS1	100	657/657	DAQJHE010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.denovo.060, whole genome shotgun sequence	131..787	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQJHE010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.guided.059, whole genome shotgun sequence	3357..4013	Ciprofloxacin	AB187515	sul3	100	792/792	DAQJHE010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.denovo.070, whole genome shotgun sequence	242..1033	Sulfamethoxazole	AJ459418	sul2	100	816/816	DAQJHE010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.denovo.072, whole genome shotgun sequence	329..1144	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQJHE010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.guided.069, whole genome shotgun sequence	1898..2713	Sulfamethoxazole	AY034138	sul3	100	792/792	DAQJHE010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.guided.073, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	DAQJHE010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.denovo.062, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	DAQJHE010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.denovo.065, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(A)	99.92	1200/1200	DAQJHE010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.guided.061, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	DAQJHE010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.guided.067, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	DAQJHE010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.denovo.051, whole genome shotgun sequence	4168..4665	Trimethoprim	AM040708	dfrA12	100	498/498	DAQJHE010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.guided.055, whole genome shotgun sequence	975..1472	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																									parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQJHE010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00022437 SAMN37820249-rid19924423.denovo.057, whole genome shotgun sequence	3134..3264																																																						avrA	DAQJHE010000007.1	185014..185883	99.195	870	0						
GCA_032926745.1_PDT001950692.1_genomic.fna	Salmonella_enterica	0.5221	105.39 KB	10	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJHC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00039885 SAMN37820744-rid19923063.denovo.01, whole genome shotgun sequence	358959..359396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJHC010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00039885 SAMN37820744-rid19923063.guided.41, whole genome shotgun sequence	15590..16027	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032926765.1_PDT001950691.1_genomic.fna	Salmonella_enterica	0.521	312.881 KB	5	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_430,thrA_8	1939	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_430	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJHG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00039992 SAMN37820745-rid19924413.denovo.01, whole genome shotgun sequence	377972..378409	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJHG010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00039992 SAMN37820745-rid19924413.guided.21, whole genome shotgun sequence	7384..7821	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	ColRNAI	90.08	131 / 130	DAQJHG010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00039992 SAMN37820745-rid19924413.denovo.32, whole genome shotgun sequence	3981..4111																																																																	
GCA_032926785.1_PDT001950690.1_genomic.fna	Salmonella_enterica	0.5208	251.654 KB	7	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJHF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040044 SAMN37820746-rid19920263.denovo.01, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJHF010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040044 SAMN37820746-rid19920263.guided.14, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJHF010000011.1	93868..94726	98.506	870	0						
GCA_032926805.1_PDT001950688.1_genomic.fna	Salmonella_enterica	0.5211	122.814 KB	13	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJHH010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040091 SAMN37820748-rid19925663.denovo.10, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJHH010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040091 SAMN37820748-rid19925663.guided.23, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJHH010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040091 SAMN37820748-rid19925663.denovo.59, whole genome shotgun sequence	1380..1572																																																																	
GCA_032926815.1_PDT001950685.1_genomic.fna	Salmonella_enterica	0.5216	138.544 KB	10	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJHK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00040140 SAMN37820751-rid19920253.denovo.01, whole genome shotgun sequence	625711..626148	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJHK010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00040140 SAMN37820751-rid19920253.guided.40, whole genome shotgun sequence	11595..12032	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQJHK010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00040140 SAMN37820751-rid19920253.denovo.44, whole genome shotgun sequence	4500..5360	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJHK010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00040140 SAMN37820751-rid19920253.guided.46, whole genome shotgun sequence	605..1465	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQJHK010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00040140 SAMN37820751-rid19920253.denovo.50, whole genome shotgun sequence	1479..1609																																																						avrA	DAQJHK010000019.1	99222..100091	98.966	870	0						
GCA_032926845.1_PDT001950687.1_genomic.fna	Salmonella_enterica	0.5225	122.539 KB	13	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncL	aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJHI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00040099 SAMN37820749-rid19921623.denovo.01, whole genome shotgun sequence	83155..83592	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJHI010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00040099 SAMN37820749-rid19921623.guided.47, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncL	96.69	664 / 661	DAQJHI010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00040099 SAMN37820749-rid19921623.denovo.31, whole genome shotgun sequence	37098..37760																																																						avrA	DAQJHI010000004.1	95271..96140	99.425	870	0						
GCA_032926865.1_PDT001950681.1_genomic.fna	Salmonella_enterica	0.5214	143.346 KB	12	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJHO010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040181 SAMN37820754-rid19924393.denovo.12, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJHO010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040181 SAMN37820754-rid19924393.guided.47, whole genome shotgun sequence	15205..15642	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJHO010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040181 SAMN37820754-rid19924393.denovo.66, whole genome shotgun sequence	1380..1572																																																																	
GCA_032926885.1_PDT001950680.1_genomic.fna	Salmonella_enterica	0.5223	108.17 KB	13	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJHM010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00040228 SAMN37820755-rid19920243.denovo.11, whole genome shotgun sequence	48313..48750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJHM010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00040228 SAMN37820755-rid19920243.guided.47, whole genome shotgun sequence	15075..15512	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJHM010000003.1	172805..173675	99.656	871	0						
GCA_032926905.1_PDT001950678.1_genomic.fna	Salmonella_enterica	0.5186	125.04 KB	11	aroC_16,dnaN_487,hemD_20,hisD_18,purE_8,sucA_447,thrA_18	2299	4:d:1,2	12	aac(6')-Iaa,aadA2,aac(6')-Iaa,aadA2,blaTEM-1B,blaTEM-1B,mph(A),mph(A),floR,floR,qnrS1,qnrS1,sul1,sul3,sul1,sul3,tet(M),tet(A),tet(M),tet(A),dfrA12,dfrA12,bleO,bleO	1	parC_p.T57S	2	IncHI2,IncHI2A	aroC	100	100	aroC_16	dnaN	100	100	dnaN_487	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_447	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJHL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.denovo.01, whole genome shotgun sequence	250245..250682	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	DAQJHL010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.denovo.55, whole genome shotgun sequence	3370..4161	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	98.63	438/438	DAQJHL010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.guided.11, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	DAQJHL010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.guided.59, whole genome shotgun sequence	2788..3579	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	DAQJHL010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.denovo.54, whole genome shotgun sequence	7881..8741	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJHL010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.guided.75, whole genome shotgun sequence	51..911	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	mph(A)	99.89	906/906	DAQJHL010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.denovo.69, whole genome shotgun sequence	3220..4125	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	DAQJHL010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.guided.68, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.11	1214/1215	DAQJHL010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.denovo.67, whole genome shotgun sequence	1100..2313	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	DAQJHL010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.guided.66, whole genome shotgun sequence	2017..3230	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	DAQJHL010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.denovo.79, whole genome shotgun sequence	737..1393	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQJHL010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.guided.78, whole genome shotgun sequence	592..1248	Ciprofloxacin	AB187515	sul1	100	840/840	DAQJHL010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.denovo.55, whole genome shotgun sequence	2026..2865	Sulfamethoxazole	U12338	sul3	100	792/792	DAQJHL010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.denovo.71, whole genome shotgun sequence	1271..2062	Sulfamethoxazole	AJ459418	sul1	100	840/840	DAQJHL010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.guided.59, whole genome shotgun sequence	4084..4923	Sulfamethoxazole	U12338	sul3	100	792/792	DAQJHL010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.guided.70, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(M)	99.9	1920/1920	DAQJHL010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.denovo.54, whole genome shotgun sequence	3866..5785	Doxycycline, Tetracycline, Minocycline	X75073	tet(A)	99.83	1200/1200	DAQJHL010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.denovo.72, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(M)	99.9	1920/1920	DAQJHL010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.guided.62, whole genome shotgun sequence	3907..5826	Doxycycline, Tetracycline, Minocycline	X75073	tet(A)	99.83	1200/1200	DAQJHL010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.guided.73, whole genome shotgun sequence	890..2089	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	DAQJHL010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.denovo.55, whole genome shotgun sequence	4569..5066	Trimethoprim	AM040708	dfrA12	100	498/498	DAQJHL010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.guided.59, whole genome shotgun sequence	1883..2380	Trimethoprim	AM040708	bleO	100	362/399	DAQJHL010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.denovo.74, whole genome shotgun sequence	3273..3634	Bleomycin	AF051917	bleO	100	362/399	DAQJHL010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.guided.84, whole genome shotgun sequence	39..400	Bleomycin	AF051917																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	DAQJHL010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.denovo.31, whole genome shotgun sequence	29800..30126	enterobacteriales	IncHI2A	99.52	630 / 630	DAQJHL010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00041467 SAMN37820814-rid19925643.denovo.31, whole genome shotgun sequence	44994..45623																																																avrA	DAQJHL010000024.1	39483..40349	98.966	870	0						
GCA_032926925.1_PDT001950677.1_genomic.fna	Salmonella_enterica	0.52	106.423 KB	18	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJHN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00041494 SAMN37820815-rid19921613.denovo.001, whole genome shotgun sequence	224824..225261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQJHN010000105.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00041494 SAMN37820815-rid19921613.guided.036, whole genome shotgun sequence	44263..44700	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJHN010000026.1	43534..44403	99.425	870	0						
GCA_032926945.1_PDT001950679.1_genomic.fna	Salmonella_enterica	0.5216	123.192 KB	14	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJHJ010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040291 SAMN37820756-rid19923773.denovo.23, whole genome shotgun sequence	52323..52760	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJHJ010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040291 SAMN37820756-rid19923773.guided.31, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJHJ010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040291 SAMN37820756-rid19923773.denovo.79, whole genome shotgun sequence	1380..1572																																																																	
GCA_032926965.1_PDT001950676.1_genomic.fna	Salmonella_enterica	0.5209	168.677 KB	10	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJHP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041495 SAMN37820816-rid19925633.denovo.01, whole genome shotgun sequence	106210..106647	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJHP010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041495 SAMN37820816-rid19925633.guided.17, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJHP010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041495 SAMN37820816-rid19925633.denovo.53, whole genome shotgun sequence	1604..1734																																																																	
GCA_032926985.1_PDT001950675.1_genomic.fna	Salmonella_enterica	0.52	136.522 KB	12	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJHQ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00041498 SAMN37820817-rid19920233.denovo.09, whole genome shotgun sequence	14065..14502	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQJHQ010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00041498 SAMN37820817-rid19920233.guided.51, whole genome shotgun sequence	14086..14523	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJHQ010000010.1	81525..82394	99.425	870	0						
GCA_032927005.1_PDT001950674.1_genomic.fna	Salmonella_enterica	0.522	83.456 KB	18	aroC_14,dnaN_210,hemD_8,hisD_14,purE_38,sucA_19,thrA_102	1792	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	100	100	hemD_8	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJHR010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00041506 SAMN37820818-rid19927093.denovo.006, whole genome shotgun sequence	89189..89626	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJHR010000107.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00041506 SAMN37820818-rid19927093.guided.027, whole genome shotgun sequence	42397..42834	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQJHR010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00041506 SAMN37820818-rid19927093.denovo.046, whole genome shotgun sequence	22353..22494																																																						avrA	DAQJHR010000009.1	94003..94872	99.54	870	0						
GCA_032927025.1_PDT001950673.1_genomic.fna	Salmonella_enterica	0.5219	74.883 KB	19	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJHS010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00041508 SAMN37820819-rid19920223.denovo.022, whole genome shotgun sequence	52306..52743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJHS010000122.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00041508 SAMN37820819-rid19920223.guided.031, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJHS010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00041508 SAMN37820819-rid19920223.denovo.106, whole genome shotgun sequence	1380..1572																																																																	
GCA_032927045.1_PDT001950671.1_genomic.fna	Salmonella_enterica	0.5218	66.005 KB	22	aroC_301,dnaN_272,hemD_48,hisD_16,purE_40,sucA_13,thrA_3	864	-:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_301	dnaN	100	100	dnaN_272	hemD	100	100	hemD_48	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_3	-	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:m,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJHT010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00041637 SAMN37820821-rid19924383.denovo.050, whole genome shotgun sequence	14077..14514	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJHT010000120.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00041637 SAMN37820821-rid19924383.guided.081, whole genome shotgun sequence	10168..10605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032927065.1_PDT001950672.1_genomic.fna	Salmonella_enterica	0.5215	125.624 KB	13	aroC_41,dnaN_13,hemD_10,hisD_12,purE_5,sucA_19,thrA_12	3211	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_41	dnaN	100	100	dnaN_13	hemD	100	100	hemD_10	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJHU010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00041591 SAMN37820820-rid19923033.denovo.26, whole genome shotgun sequence	11393..11830	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJHU010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00041591 SAMN37820820-rid19923033.guided.51, whole genome shotgun sequence	14157..14594	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	DAQJHU010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00041591 SAMN37820820-rid19923033.denovo.63, whole genome shotgun sequence	967..1118																																																						avrA	DAQJHU010000007.1	83302..84171	99.77	870	0						
GCA_032927085.1_PDT001950669.1_genomic.fna	Salmonella_enterica	0.5225	97.692 KB	15	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA7,aac(3)-Id,aph(6)-Id,aph(3'')-Ib,aadA7,aac(3)-Id,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJHV010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041717 SAMN37820823-rid19923763.denovo.25, whole genome shotgun sequence	52313..52750	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQJHV010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041717 SAMN37820823-rid19923763.denovo.58, whole genome shotgun sequence	15549..16385	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQJHV010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041717 SAMN37820823-rid19923763.denovo.58, whole genome shotgun sequence	16385..17188	Streptomycin	AF321551	aadA7	100	798/798	DAQJHV010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041717 SAMN37820823-rid19923763.denovo.58, whole genome shotgun sequence	1563..2360	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJHV010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041717 SAMN37820823-rid19923763.denovo.58, whole genome shotgun sequence	1011..1487	Gentamicin, Astromicin, Fortimicin	AB114632	aph(6)-Id	100	837/837	DAQJHV010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041717 SAMN37820823-rid19923763.guided.56, whole genome shotgun sequence	15588..16424	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQJHV010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041717 SAMN37820823-rid19923763.guided.56, whole genome shotgun sequence	16424..17227	Streptomycin	AF321551	aadA7	100	798/798	DAQJHV010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041717 SAMN37820823-rid19923763.guided.56, whole genome shotgun sequence	1602..2399	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJHV010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041717 SAMN37820823-rid19923763.guided.56, whole genome shotgun sequence	1050..1526	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	DAQJHV010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041717 SAMN37820823-rid19923763.guided.69, whole genome shotgun sequence	7956..8393	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQJHV010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041717 SAMN37820823-rid19923763.denovo.81, whole genome shotgun sequence	408..1268	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJHV010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041717 SAMN37820823-rid19923763.guided.80, whole genome shotgun sequence	964..1824	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	DAQJHV010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041717 SAMN37820823-rid19923763.denovo.58, whole genome shotgun sequence	2865..3704	Sulfamethoxazole	U12338	sul1	100	840/840	DAQJHV010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041717 SAMN37820823-rid19923763.guided.56, whole genome shotgun sequence	2904..3743	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQJHV010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041717 SAMN37820823-rid19923763.denovo.58, whole genome shotgun sequence	10610..11809	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQJHV010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041717 SAMN37820823-rid19923763.guided.56, whole genome shotgun sequence	10649..11848	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	DAQJHV010000005.1	118733..119602	99.31	870	0						
GCA_032927105.1_PDT001950670.1_genomic.fna	Salmonella_enterica	0.5198	120.005 KB	14	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJHW010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00041688 SAMN37820822-rid19921603.denovo.04, whole genome shotgun sequence	62385..62822	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQJHW010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00041688 SAMN37820822-rid19921603.guided.56, whole genome shotgun sequence	7410..7847	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJHW010000039.1	43544..44413	99.425	870	0						
GCA_032927125.1_PDT001950665.1_genomic.fna	Salmonella_enterica	0.5216	99.78 KB	14	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJHZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041742 SAMN37820826-rid19920203.denovo.01, whole genome shotgun sequence	51502..51939	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJHZ010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041742 SAMN37820826-rid19920203.guided.54, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032927145.1_PDT001950667.1_genomic.fna	Salmonella_enterica	0.5216	88.514 KB	18	aroC_117,dnaN_14,hemD_23,hisD_127,purE_6,sucA_7,thrA_22	462	-:k:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_117	dnaN	100	100	dnaN_14	hemD	100	100	hemD_23	hisD	100	100	hisD_127	purE	100	100	purE_6	sucA	100	100	sucA_7	thrA	100	100	thrA_22	-	k	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJHX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00041730 SAMN37820824-rid19921593.denovo.001, whole genome shotgun sequence	83715..84152	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJHX010000104.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00041730 SAMN37820824-rid19921593.guided.037, whole genome shotgun sequence	16459..16896	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJHX010000010.1	121713..122582	99.77	870	0						
GCA_032927165.1_PDT001950666.1_genomic.fna	Salmonella_enterica	0.5221	65.414 KB	25	aroC_301,dnaN_272,hemD_48,hisD_16,purE_40,sucA_13,thrA_3	864	-:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_301	dnaN	100	100	dnaN_272	hemD	100	100	hemD_48	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_3	-	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:m,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJHY010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00041733 SAMN37820825-rid19925623.denovo.064, whole genome shotgun sequence	11305..11742	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJHY010000139.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00041733 SAMN37820825-rid19925623.guided.086, whole genome shotgun sequence	14202..14639	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032927185.1_PDT001950664.1_genomic.fna	Salmonella_enterica	0.5214	86.864 KB	17	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJIA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041863 SAMN37820827-rid19927083.denovo.01, whole genome shotgun sequence	212333..212770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJIA010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041863 SAMN37820827-rid19927083.guided.42, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJIA010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041863 SAMN37820827-rid19927083.denovo.72, whole genome shotgun sequence	1604..1734																																																																	
GCA_032927205.1_PDT001950663.1_genomic.fna	Salmonella_enterica	0.5184	116.03 KB	11	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJIB010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00041870 SAMN37820828-rid19920193.denovo.02, whole genome shotgun sequence	12553..12990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJIB010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00041870 SAMN37820828-rid19920193.guided.26, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJIB010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00041870 SAMN37820828-rid19920193.denovo.11, whole genome shotgun sequence	7289..7615	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJIB010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00041870 SAMN37820828-rid19920193.denovo.11, whole genome shotgun sequence	22481..23110																																																avrA	DAQJIB010000006.1	108027..108896	99.77	870	0						
GCA_032927225.1_PDT001950662.1_genomic.fna	Salmonella_enterica	0.5194	159.666 KB	10	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	9,46:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	9,46	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Gateshead		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJIC010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00041891 SAMN37820829-rid19923023.denovo.04, whole genome shotgun sequence	163439..163876	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJIC010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00041891 SAMN37820829-rid19923023.guided.22, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJIC010000012.1	39428..40297	98.966	870	0						
GCA_032927245.1_PDT001950660.1_genomic.fna	Salmonella_enterica	0.5214	129.351 KB	12	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJIE010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041909 SAMN37820831-rid19921583.denovo.18, whole genome shotgun sequence	84790..85227	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJIE010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041909 SAMN37820831-rid19921583.guided.39, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQJIE010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041909 SAMN37820831-rid19921583.denovo.56, whole genome shotgun sequence	406..1266	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJIE010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041909 SAMN37820831-rid19921583.guided.55, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	DAQJIE010000006.1	39539..40408	99.31	870	0						
GCA_032927255.1_PDT001950661.1_genomic.fna	Salmonella_enterica	0.5209	138.717 KB	10	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJID010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041895 SAMN37820830-rid19925613.denovo.01, whole genome shotgun sequence	65146..65583	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJID010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041895 SAMN37820830-rid19925613.guided.20, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJID010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041895 SAMN37820830-rid19925613.denovo.51, whole genome shotgun sequence	1604..1734																																																																	
GCA_032927285.1_PDT001950659.1_genomic.fna	Salmonella_enterica	0.5218	96.688 KB	15	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJIF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041914 SAMN37820832-rid19923753.denovo.01, whole genome shotgun sequence	51687..52124	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJIF010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041914 SAMN37820832-rid19923753.guided.33, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJIF010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041914 SAMN37820832-rid19923753.denovo.76, whole genome shotgun sequence	1604..1734																																																																	
GCA_032927305.1_PDT001950657.1_genomic.fna	Salmonella_enterica	0.521	187.26 KB	8	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pHN7A8)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJIH010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00022739 SAMN37820258-rid19921563.denovo.03, whole genome shotgun sequence	82523..82960	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJIH010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00022739 SAMN37820258-rid19921563.guided.33, whole genome shotgun sequence	15542..15979	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pHN7A8)	96.95	262 / 260	DAQJIH010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00022739 SAMN37820258-rid19921563.denovo.21, whole genome shotgun sequence	10675..10936																																																						avrA	DAQJIH010000007.1	78608..79477	99.54	870	0						
GCA_032927325.1_PDT001950658.1_genomic.fna	Salmonella_enterica	0.5213	93.402 KB	14	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64!,purE_64!,sucA_64,thrA_67	Unknown	8:i:z6	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	2	Col156,ColpVC	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64!	purE	100	100	purE_64!	sucA	100	100	sucA_64	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJIG010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041942 SAMN37820833-rid19921573.denovo.29, whole genome shotgun sequence	52306..52743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJIG010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041942 SAMN37820833-rid19921573.guided.14, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQJIG010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041942 SAMN37820833-rid19921573.denovo.81, whole genome shotgun sequence	407..1267	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJIG010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041942 SAMN37820833-rid19921573.guided.79, whole genome shotgun sequence	569..1429	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	Col156	98.03	152 / 154	DAQJIG010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041942 SAMN37820833-rid19921573.denovo.74, whole genome shotgun sequence	990..1141	enterobacteriales	ColpVC	96.89	193 / 193	DAQJIG010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00041942 SAMN37820833-rid19921573.denovo.80, whole genome shotgun sequence	996..1188																																																avrA	DAQJIG010000023.1	39539..40408	99.31	870	0						
GCA_032927345.1_PDT001950654.1_genomic.fna	Salmonella_enterica	0.522	82.215 KB	19	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJIK010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042176 SAMN37820836-rid19927073.denovo.14, whole genome shotgun sequence	23193..23630	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJIK010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042176 SAMN37820836-rid19927073.guided.56, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJIK010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042176 SAMN37820836-rid19927073.denovo.84, whole genome shotgun sequence	1604..1734																																																																	
GCA_032927365.1_PDT001950653.1_genomic.fna	Salmonella_enterica	0.5211	229.594 KB	6	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJIL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042177 SAMN37820837-rid19920173.denovo.01, whole genome shotgun sequence	372562..372999	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJIL010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042177 SAMN37820837-rid19920173.guided.22, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJIL010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042177 SAMN37820837-rid19920173.denovo.34, whole genome shotgun sequence	1604..1734																																																																	
GCA_032927385.1_PDT001950656.1_genomic.fna	Salmonella_enterica	0.5216	88.321 KB	16	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJIM010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041944 SAMN37820834-rid19925603.denovo.06, whole genome shotgun sequence	133656..134093	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJIM010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041944 SAMN37820834-rid19925603.guided.16, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJIM010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00041944 SAMN37820834-rid19925603.denovo.74, whole genome shotgun sequence	1604..1734																																																																	
GCA_032927405.1_PDT001950652.1_genomic.fna	Salmonella_enterica	0.5211	127.281 KB	11	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJIJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042180 SAMN37820838-rid19923013.denovo.01, whole genome shotgun sequence	111738..112175	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJIJ010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042180 SAMN37820838-rid19923013.guided.14, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032927425.1_PDT001950651.1_genomic.fna	Salmonella_enterica	0.518	82.948 KB	22	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJIN010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00042184 SAMN37820839-rid19924373.denovo.065, whole genome shotgun sequence	11356..11793	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQJIN010000146.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00042184 SAMN37820839-rid19924373.guided.063, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJIN010000008.1	81526..82395	99.31	870	0						
GCA_032927445.1_PDT001950649.1_genomic.fna	Salmonella_enterica	0.5221	146.031 KB	13	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJIO010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042218 SAMN37820841-rid19927063.denovo.05, whole genome shotgun sequence	32135..32572	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJIO010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042218 SAMN37820841-rid19927063.guided.35, whole genome shotgun sequence	37891..38328	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQJIO010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042218 SAMN37820841-rid19927063.denovo.39, whole genome shotgun sequence	20981..21122																																																						avrA	DAQJIO010000016.1	39483..40352	99.655	870	0						
GCA_032927465.1_PDT001950647.1_genomic.fna	Salmonella_enterica	0.5186	149.62 KB	11	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJIR010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042230 SAMN37820843-rid19921533.denovo.02, whole genome shotgun sequence	145232..145669	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJIR010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042230 SAMN37820843-rid19921533.guided.19, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJIR010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042230 SAMN37820843-rid19921533.denovo.16, whole genome shotgun sequence	89250..89576	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJIR010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042230 SAMN37820843-rid19921533.denovo.16, whole genome shotgun sequence	104442..105071																																																avrA	DAQJIR010000015.1	39483..40352	99.77	870	0						
GCA_032927485.1_PDT001950648.1_genomic.fna	Salmonella_enterica	0.5212	158.889 KB	10	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJIP010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00042219 SAMN37820842-rid19921543.denovo.07, whole genome shotgun sequence	15470..15907	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJIP010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00042219 SAMN37820842-rid19921543.guided.43, whole genome shotgun sequence	7963..8400	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.25	129 / 131	DAQJIP010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00042219 SAMN37820842-rid19921543.denovo.69, whole genome shotgun sequence	190..318																																																						avrA	DAQJIP010000006.1	166216..167085	99.77	870	0						
GCA_032927505.1_PDT001950646.1_genomic.fna	Salmonella_enterica	0.5234	65.409 KB	23	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFIB(pHCM2)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJIQ010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00044686 SAMN37820930-rid19925593.denovo.024, whole genome shotgun sequence	12471..12908	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJIQ010000135.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00044686 SAMN37820930-rid19925593.guided.065, whole genome shotgun sequence	15447..15884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJIQ010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00044686 SAMN37820930-rid19925593.denovo.105, whole genome shotgun sequence	557..687	enterobacteriales	IncFIB(pHCM2)	98.63	875 / 875	DAQJIQ010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00044686 SAMN37820930-rid19925593.denovo.008, whole genome shotgun sequence	31010..31884																																																											
GCA_032927545.1_PDT001950644.1_genomic.fna	Salmonella_enterica	0.5213	61.259 KB	23	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQJIS010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00044699 SAMN37820932-rid19927053.denovo.017, whole genome shotgun sequence	16043..16480	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQJIS010000153.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00044699 SAMN37820932-rid19927053.guided.070, whole genome shotgun sequence	7296..7733	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQJIS010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00044699 SAMN37820932-rid19927053.denovo.112, whole genome shotgun sequence	400..530	enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJIS010000117.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00044699 SAMN37820932-rid19927053.denovo.120, whole genome shotgun sequence	547..675		enterobacteriales	Col440I	90	110 / 114	DAQJIS010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00044699 SAMN37820932-rid19927053.denovo.101, whole genome shotgun sequence	3377..3486																																																				
GCA_032927565.1_PDT001950643.1_genomic.fna	Salmonella_enterica	0.5201	54.246 KB	29	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	-:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(K),IncFII,IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	-	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJIU010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044704 SAMN37820933-rid19920163.denovo.006, whole genome shotgun sequence	11353..11790	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJIU010000171.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044704 SAMN37820933-rid19920163.guided.084, whole genome shotgun sequence	14277..14714	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(K)	99.82	560 / 560	DAQJIU010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044704 SAMN37820933-rid19920163.denovo.111, whole genome shotgun sequence	4259..4818	enterobacteriales	IncFII	99.62	261 / 261	DAQJIU010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044704 SAMN37820933-rid19920163.denovo.126, whole genome shotgun sequence	3515..3775		enterobacteriales	IncHI2	99.69	327 / 327	DAQJIU010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044704 SAMN37820933-rid19920163.denovo.058, whole genome shotgun sequence	7289..7615		enterobacteriales	IncHI2A	99.84	630 / 630	DAQJIU010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044704 SAMN37820933-rid19920163.denovo.058, whole genome shotgun sequence	22481..23110																																		avrA	DAQJIU010000013.1	39349..40218	99.77	870	0						
GCA_032927585.1_PDT001950641.1_genomic.fna	Salmonella_enterica	0.5211	38.967 KB	37	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJIW010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044727 SAMN37820934-rid19925583.denovo.095, whole genome shotgun sequence	11309..11746	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	DAQJIW010000119.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044727 SAMN37820934-rid19925583.denovo.123, whole genome shotgun sequence	11941..12732	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	DAQJIW010000119.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044727 SAMN37820934-rid19925583.denovo.123, whole genome shotgun sequence	11941..12732	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	99.77	438/438	DAQJIW010000256.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044727 SAMN37820934-rid19925583.guided.094, whole genome shotgun sequence	7383..7820	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	DAQJIW010000259.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044727 SAMN37820934-rid19925583.guided.121, whole genome shotgun sequence	1437..2228	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	DAQJIW010000259.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044727 SAMN37820934-rid19925583.guided.121, whole genome shotgun sequence	1437..2228	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	DAQJIW010000119.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044727 SAMN37820934-rid19925583.denovo.123, whole genome shotgun sequence	10597..11436	Sulfamethoxazole	U12338	sul1	100	840/840	DAQJIW010000259.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044727 SAMN37820934-rid19925583.guided.121, whole genome shotgun sequence	2733..3572	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQJIW010000130.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044727 SAMN37820934-rid19925583.denovo.134, whole genome shotgun sequence	1814..3013	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQJIW010000260.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044727 SAMN37820934-rid19925583.guided.154, whole genome shotgun sequence	1845..3044	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQJIW010000155.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044727 SAMN37820934-rid19925583.denovo.160, whole genome shotgun sequence	3121..3594	Trimethoprim	AF393510	dfrA14	100	474/474	DAQJIW010000261.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044727 SAMN37820934-rid19925583.guided.167, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pN55391)	100	560 / 560	DAQJIW010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044727 SAMN37820934-rid19925583.denovo.102, whole genome shotgun sequence	14638..15197																																																						avrA	DAQJIW010000030.1	43570..44439	99.425	870	0						
GCA_032927605.1_PDT001950642.1_genomic.fna	Salmonella_enterica	0.522	369.191 KB	6	aroC_5,dnaN_14,hemD_6,hisD_12,purE_5,sucA_14,thrA_58	166	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_14	thrA	100	100	thrA_58	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJIV010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00023036 SAMN37820268-rid19923003.denovo.05, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQJIV010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00023036 SAMN37820268-rid19923003.guided.19, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJIV010000001.1	403668..404537	99.655	870	0						
GCA_032927625.1_PDT001950639.1_genomic.fna	Salmonella_enterica	0.5213	196.872 KB	10	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	6	aac(6')-Iaa,aadA7,aac(3)-Id,aac(6')-Iaa,aadA7,aac(3)-Id,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJIX010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00044959 SAMN37820936-rid19927043.denovo.03, whole genome shotgun sequence	168171..168608	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQJIX010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00044959 SAMN37820936-rid19927043.denovo.48, whole genome shotgun sequence	11943..12740	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJIX010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00044959 SAMN37820936-rid19927043.denovo.48, whole genome shotgun sequence	12816..13292	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	DAQJIX010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00044959 SAMN37820936-rid19927043.guided.17, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQJIX010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00044959 SAMN37820936-rid19927043.guided.55, whole genome shotgun sequence	1699..2496	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJIX010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00044959 SAMN37820936-rid19927043.guided.55, whole genome shotgun sequence	1147..1623	Gentamicin, Astromicin, Fortimicin	AB114632	blaTEM-1B	100	861/861	DAQJIX010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00044959 SAMN37820936-rid19927043.denovo.59, whole genome shotgun sequence	406..1266	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJIX010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00044959 SAMN37820936-rid19927043.guided.58, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	DAQJIX010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00044959 SAMN37820936-rid19927043.denovo.48, whole genome shotgun sequence	10599..11438	Sulfamethoxazole	U12338	sul1	100	840/840	DAQJIX010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00044959 SAMN37820936-rid19927043.guided.55, whole genome shotgun sequence	3001..3840	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQJIX010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00044959 SAMN37820936-rid19927043.denovo.48, whole genome shotgun sequence	2341..3540	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQJIX010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00044959 SAMN37820936-rid19927043.guided.52, whole genome shotgun sequence	5691..6890	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	DAQJIX010000007.1	119011..119880	99.31	870	0						
GCA_032927665.1_PDT001950635.1_genomic.fna	Salmonella_enterica	0.521	229.499 KB	8	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJIY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00045188 SAMN37820940-rid19922973.denovo.01, whole genome shotgun sequence	129565..130002	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJIY010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00045188 SAMN37820940-rid19922973.guided.23, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032927685.1_PDT001950627.1_genomic.fna	Salmonella_enterica	0.5219	139.729 KB	9	aroC_14,dnaN_210,hemD_8,hisD_14,purE_38,sucA_19,thrA_102	1792	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	100	100	hemD_8	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJJH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00045408 SAMN37820947-rid19922943.denovo.01, whole genome shotgun sequence	153893..154330	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJJH010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00045408 SAMN37820947-rid19922943.guided.22, whole genome shotgun sequence	42397..42834	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJJH010000014.1	60959..61828	99.54	870	0						
GCA_032927695.1_PDT001950625.1_genomic.fna	Salmonella_enterica	0.522	96.188 KB	17	aroC_112,dnaN_356,hemD_505,hisD_99,purE_896,sucA_589,thrA_643	Unknown	-:d:1,6	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_112	dnaN	100	100	dnaN_356	hemD	100	100	hemD_505	hisD	100	100	hisD_99	purE	100	100	purE_896	sucA	100	100	sucA_589	thrA	100	100	thrA_643	-	d	1,6	-	- -:d:1,6	The input genome cannot be identified as Salmonella. Check the input for taxonomic ID, contamination, or sequencing quality.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJJL010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kivu isolate AUSMDU00045490 SAMN37820949-rid19922933.denovo.21, whole genome shotgun sequence	11330..11767	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJJL010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kivu isolate AUSMDU00045490 SAMN37820949-rid19922933.guided.33, whole genome shotgun sequence	43525..43962	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	262 / 262	DAQJJL010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kivu isolate AUSMDU00045490 SAMN37820949-rid19922933.denovo.56, whole genome shotgun sequence	2340..2601																																																																	
GCA_032927725.1_PDT001950655.1_genomic.fna	Salmonella_enterica	0.5215	106.022 KB	16	aroC_41,dnaN_13,hemD_10,hisD_12,purE_5!,purE_5!,sucA_19,thrA_12	Unknown	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col8282	aroC	100	100	aroC_41	dnaN	100	100	dnaN_13	hemD	100	100	hemD_10	hisD	100	100	hisD_12	purE	100	100	purE_5!	purE	100	100	purE_5!	sucA	100	100	sucA_19	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJII010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00041947 SAMN37820835-rid19920183.denovo.28, whole genome shotgun sequence	13074..13511	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJII010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00041947 SAMN37820835-rid19920183.guided.09, whole genome shotgun sequence	44304..44741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQJII010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00041947 SAMN37820835-rid19920183.denovo.83, whole genome shotgun sequence	186..316	enterobacteriales	Col8282	90.1	202 / 207	DAQJII010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00041947 SAMN37820835-rid19920183.denovo.82, whole genome shotgun sequence	191..392																																																avrA	DAQJII010000009.1	126485..127354	99.77	870	0						
GCA_032927775.1_PDT001950637.1_genomic.fna	Salmonella_enterica	0.52	145.953 KB	10	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col(pHAD28)	aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQJJA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00045041 SAMN37820938-rid19922983.denovo.01, whole genome shotgun sequence	261218..261655	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQJJA010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00045041 SAMN37820938-rid19922983.guided.17, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJJA010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00045041 SAMN37820938-rid19922983.denovo.53, whole genome shotgun sequence	547..675																																																																	
GCA_032927795.1_PDT001950633.1_genomic.fna	Salmonella_enterica	0.522	66.145 KB	20	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJJD010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00045250 SAMN37820942-rid19920153.denovo.008, whole genome shotgun sequence	51579..52016	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJJD010000113.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00045250 SAMN37820942-rid19920153.guided.031, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032927815.1_PDT001950634.1_genomic.fna	Salmonella_enterica	0.5221	97.708 KB	14	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJJC010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00045219 SAMN37820941-rid19927573.denovo.24, whole genome shotgun sequence	52354..52791	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJJC010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00045219 SAMN37820941-rid19927573.guided.42, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQJJC010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00045219 SAMN37820941-rid19927573.denovo.79, whole genome shotgun sequence	406..1266	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJJC010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00045219 SAMN37820941-rid19927573.guided.78, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	DAQJJC010000033.1	39529..40398	99.31	870	0						
GCA_032927835.1_PDT001950636.1_genomic.fna	Salmonella_enterica	0.5221	65.829 KB	23	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJJB010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00045173 SAMN37820939-rid19927033.denovo.005, whole genome shotgun sequence	40496..40933	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJJB010000132.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00045173 SAMN37820939-rid19927033.guided.031, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032927855.1_PDT001950632.1_genomic.fna	Salmonella_enterica	0.5218	96.159 KB	15	aroC_22,dnaN_104,hemD_48,hisD_231,purE_114,sucA_107,thrA_4	1069	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_48	hisD	100	100	hisD_231	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAQJJE010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00045272 SAMN37820943-rid19922963.denovo.27, whole genome shotgun sequence	12526..12963	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAQJJE010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00045272 SAMN37820943-rid19922963.guided.45, whole genome shotgun sequence	11595..12032	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJJE010000012.1	60938..61807	99.54	870	0						
GCA_032927895.1_PDT001950631.1_genomic.fna	Salmonella_enterica	0.5218	267.44 KB	6	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJJF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00023059 SAMN37820269-rid19925573.denovo.01, whole genome shotgun sequence	394013..394450	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJJF010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00023059 SAMN37820269-rid19925573.guided.14, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJJF010000006.1	93868..94737	99.77	870	0						
GCA_032927915.1_PDT001950630.1_genomic.fna	Salmonella_enterica	0.5218	113.054 KB	12	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	6	aac(6')-Iaa,aadA7,aac(3)-Id,aac(6')-Iaa,aadA7,aac(3)-Id,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJJG010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00045275 SAMN37820944-rid19922953.denovo.13, whole genome shotgun sequence	84792..85229	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQJJG010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00045275 SAMN37820944-rid19922953.denovo.55, whole genome shotgun sequence	11943..12740	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJJG010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00045275 SAMN37820944-rid19922953.denovo.55, whole genome shotgun sequence	12816..13292	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	DAQJJG010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00045275 SAMN37820944-rid19922953.guided.40, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQJJG010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00045275 SAMN37820944-rid19922953.guided.65, whole genome shotgun sequence	1699..2496	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJJG010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00045275 SAMN37820944-rid19922953.guided.65, whole genome shotgun sequence	1147..1623	Gentamicin, Astromicin, Fortimicin	AB114632	blaTEM-1B	100	861/861	DAQJJG010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00045275 SAMN37820944-rid19922953.denovo.67, whole genome shotgun sequence	406..1266	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJJG010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00045275 SAMN37820944-rid19922953.guided.66, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	DAQJJG010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00045275 SAMN37820944-rid19922953.denovo.55, whole genome shotgun sequence	10599..11438	Sulfamethoxazole	U12338	sul1	100	840/840	DAQJJG010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00045275 SAMN37820944-rid19922953.guided.64, whole genome shotgun sequence	486..1325	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQJJG010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00045275 SAMN37820944-rid19922953.denovo.55, whole genome shotgun sequence	2341..3540	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQJJG010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00045275 SAMN37820944-rid19922953.guided.56, whole genome shotgun sequence	3986..5185	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	DAQJJG010000029.1	60593..61462	99.31	870	0						
GCA_032927935.1_PDT001950629.1_genomic.fna	Salmonella_enterica	0.5191	383.108 KB	5	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	7	aac(6')-Iaa,aadA1,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aadA1,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaTEM-1A,blaTEM-1A,sul1,sul1,dfrA1,dfrA1	0		6	Col(pHAD28),IncB/O/K/Z,IncFIB(K),IncFII,IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJJK010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.denovo.06, whole genome shotgun sequence	145224..145661	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	DAQJJK010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.denovo.14, whole genome shotgun sequence	2582..3373	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	831/831	DAQJJK010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.denovo.27, whole genome shotgun sequence	14263..15093	Streptomycin	CP000971	aph(3'')-Ib	100	803/804	DAQJJK010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.denovo.27, whole genome shotgun sequence	15099..15901	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAQJJK010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.denovo.27, whole genome shotgun sequence	15099..15902	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAQJJK010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.denovo.27, whole genome shotgun sequence	15099..15902	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAQJJK010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.denovo.27, whole genome shotgun sequence	15099..15902	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	DAQJJK010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.guided.18, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	DAQJJK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.guided.31, whole genome shotgun sequence	2622..3413	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	831/831	DAQJJK010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.guided.34, whole genome shotgun sequence	3048..3878	Streptomycin	CP000971	aph(3'')-Ib	100	803/804	DAQJJK010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.guided.34, whole genome shotgun sequence	2240..3042	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAQJJK010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.guided.34, whole genome shotgun sequence	2239..3042	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAQJJK010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.guided.34, whole genome shotgun sequence	2239..3042	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAQJJK010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.guided.34, whole genome shotgun sequence	2239..3042	Streptomycin	AF321550	blaTEM-1A	100	861/861	DAQJJK010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.denovo.27, whole genome shotgun sequence	16668..17528	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	DAQJJK010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.guided.34, whole genome shotgun sequence	613..1473	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	sul1	100	840/840	DAQJJK010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.denovo.14, whole genome shotgun sequence	3878..4717	Sulfamethoxazole	U12338	sul1	100	840/840	DAQJJK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.guided.31, whole genome shotgun sequence	3918..4757	Sulfamethoxazole	U12338	dfrA1	100	474/474	DAQJJK010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.denovo.14, whole genome shotgun sequence	2016..2489	Trimethoprim	X00926	dfrA1	100	474/474	DAQJJK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.guided.31, whole genome shotgun sequence	2056..2529	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	91.15	113 / 131	DAQJJK010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.denovo.38, whole genome shotgun sequence	1410..1522	enterobacteriales	IncB/O/K/Z	94.74	152 / 151	DAQJJK010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.denovo.14, whole genome shotgun sequence	14085..14235		enterobacteriales	IncFIB(K)	99.82	560 / 560	DAQJJK010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.denovo.29, whole genome shotgun sequence	4259..4818		enterobacteriales	IncFII	99.62	261 / 261	DAQJJK010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.denovo.36, whole genome shotgun sequence	3515..3775		enterobacteriales	IncHI2	99.69	327 / 327	DAQJJK010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.denovo.08, whole genome shotgun sequence	89255..89581		enterobacteriales	IncHI2A	99.84	630 / 630	DAQJJK010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045368 SAMN37820945-rid19927023.denovo.08, whole genome shotgun sequence	104447..105076																				avrA	DAQJJK010000009.1	39483..40352	99.77	870	0						
GCA_032927955.1_PDT001950628.1_genomic.fna	Salmonella_enterica	0.5221	82.567 KB	20	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJJJ010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00045382 SAMN37820946-rid19921503.denovo.025, whole genome shotgun sequence	12505..12942	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJJJ010000110.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00045382 SAMN37820946-rid19921503.guided.064, whole genome shotgun sequence	10143..10580	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	DAQJJJ010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00045382 SAMN37820946-rid19921503.denovo.026, whole genome shotgun sequence	64812..65073																																																						avrA	DAQJJJ010000010.1	60832..61701	99.195	870	0						
GCA_032927975.1_PDT001950626.1_genomic.fna	Salmonella_enterica	0.5189	241.733 KB	8	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	2	IncHI2,IncHI2A	aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJJI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00045429 SAMN37820948-rid19925563.denovo.01, whole genome shotgun sequence	84764..85201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJJI010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00045429 SAMN37820948-rid19925563.guided.16, whole genome shotgun sequence	7429..7866	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	DAQJJI010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00045429 SAMN37820948-rid19925563.denovo.09, whole genome shotgun sequence	185123..186322	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQJJI010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00045429 SAMN37820948-rid19925563.guided.40, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	99.69	327 / 327	DAQJJI010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00045429 SAMN37820948-rid19925563.denovo.09, whole genome shotgun sequence	68872..69198	enterobacteriales	IncHI2A	99.52	630 / 630	DAQJJI010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00045429 SAMN37820948-rid19925563.denovo.09, whole genome shotgun sequence	81434..82063																																																avrA	DAQJJI010000004.1	105796..106665	99.54	870	0						
GCA_032927995.1_PDT001950624.1_genomic.fna	Salmonella_enterica	0.5214	65.38 KB	22	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJJM010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00045532 SAMN37820950-rid19923743.denovo.059, whole genome shotgun sequence	11336..11773	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJJM010000166.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00045532 SAMN37820950-rid19923743.guided.063, whole genome shotgun sequence	10197..10634	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJJM010000120.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00045532 SAMN37820950-rid19923743.denovo.123, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJJM010000121.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00045532 SAMN37820950-rid19923743.denovo.124, whole genome shotgun sequence	3345..3457																																																											
GCA_032928015.1_PDT001950623.1_genomic.fna	Salmonella_enterica	0.5198	59.341 KB	21	aroC_43,dnaN_47,hemD_49,hisD_16,purE_41,sucA_15,thrA_3	241	-:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJJN010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00045605 SAMN37820951-rid19920143.denovo.058, whole genome shotgun sequence	15448..15885	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJJN010000153.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00045605 SAMN37820951-rid19920143.guided.072, whole genome shotgun sequence	9267..9704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJJN010000006.1	60944..61813	98.966	870	0						
GCA_032928035.1_PDT001950621.1_genomic.fna	Salmonella_enterica	0.522	164.645 KB	10	aroC_14,dnaN_210,hemD_8,hisD_14,purE_38,sucA_19,thrA_102	1792	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	100	100	hemD_8	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJJR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00045708 SAMN37820953-rid19925553.denovo.01, whole genome shotgun sequence	173022..173459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJJR010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00045708 SAMN37820953-rid19925553.guided.28, whole genome shotgun sequence	42397..42834	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJJR010000006.1	98344..99213	99.54	870	0						
GCA_032928055.1_PDT001950622.1_genomic.fna	Salmonella_enterica	0.519	151.599 KB	9	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(S),IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJJP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00045707 SAMN37820952-rid19921493.denovo.01, whole genome shotgun sequence	550377..550814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQJJP010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00045707 SAMN37820952-rid19921493.guided.47, whole genome shotgun sequence	7359..7796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(S)	93.31	643 / 643	DAQJJP010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00045707 SAMN37820952-rid19921493.denovo.41, whole genome shotgun sequence	13700..14342	enterobacteriales	IncFIB(pB171)	93.31	643 / 643	DAQJJP010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00045707 SAMN37820952-rid19921493.denovo.41, whole genome shotgun sequence	13700..14342		enterobacteriales	IncFII(Yp)	90.91	231 / 230	DAQJJP010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00045707 SAMN37820952-rid19921493.denovo.44, whole genome shotgun sequence	3235..3461																																									avrA	DAQJJP010000005.1	114438..115307	99.425	870	0						
GCA_032928075.1_PDT001950620.1_genomic.fna	Salmonella_enterica	0.5218	722.837 KB	3	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64!,purE_64!,sucA_64,thrA_67	Unknown	8:i:z6	6	aac(6')-Iaa,aadA7,aac(3)-Id,aac(6')-Iaa,aadA7,aac(3)-Id,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	2	Col(pHAD28),ColpVC	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64!	purE	100	100	purE_64!	sucA	100	100	sucA_64	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJJQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023065 SAMN37820270-rid19921483.denovo.01, whole genome shotgun sequence	1329384..1329821	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQJJQ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023065 SAMN37820270-rid19921483.denovo.20, whole genome shotgun sequence	11943..12740	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJJQ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023065 SAMN37820270-rid19921483.denovo.20, whole genome shotgun sequence	12816..13292	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	DAQJJQ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023065 SAMN37820270-rid19921483.guided.14, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQJJQ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023065 SAMN37820270-rid19921483.guided.19, whole genome shotgun sequence	1699..2496	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJJQ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023065 SAMN37820270-rid19921483.guided.19, whole genome shotgun sequence	1147..1623	Gentamicin, Astromicin, Fortimicin	AB114632	blaTEM-1B	100	861/861	DAQJJQ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023065 SAMN37820270-rid19921483.denovo.27, whole genome shotgun sequence	406..1266	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJJQ010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023065 SAMN37820270-rid19921483.guided.26, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	DAQJJQ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023065 SAMN37820270-rid19921483.denovo.20, whole genome shotgun sequence	10599..11438	Sulfamethoxazole	U12338	sul1	100	840/840	DAQJJQ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023065 SAMN37820270-rid19921483.guided.19, whole genome shotgun sequence	3001..3840	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQJJQ010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023065 SAMN37820270-rid19921483.denovo.20, whole genome shotgun sequence	2341..3540	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQJJQ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023065 SAMN37820270-rid19921483.guided.19, whole genome shotgun sequence	10899..12098	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJJQ010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023065 SAMN37820270-rid19921483.denovo.23, whole genome shotgun sequence	557..687	enterobacteriales	ColpVC	98.96	193 / 193	DAQJJQ010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023065 SAMN37820270-rid19921483.denovo.28, whole genome shotgun sequence	805..997																																																avrA	DAQJJQ010000002.1	186116..186985	99.31	870	0						
GCA_032928095.1_PDT001950618.1_genomic.fna	Salmonella_enterica	0.5227	71.104 KB	21	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	-:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	-	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:z:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQJJS010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00045808 SAMN37820955-rid19920133.denovo.022, whole genome shotgun sequence	17255..17692	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQJJS010000136.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00045808 SAMN37820955-rid19920133.guided.039, whole genome shotgun sequence	14066..14503	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032928115.1_PDT001950619.1_genomic.fna	Salmonella_enterica	0.522	97.23 KB	16	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJJO010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar London isolate AUSMDU00045728 SAMN37820954-rid19927013.denovo.29, whole genome shotgun sequence	15520..15957	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQJJO010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar London isolate AUSMDU00045728 SAMN37820954-rid19927013.guided.50, whole genome shotgun sequence	15634..16071	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJJO010000010.1	36961..37830	99.425	870	0						
GCA_032928135.1_PDT001950616.1_genomic.fna	Salmonella_enterica	0.5202	90.666 KB	20	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	-:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	-	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,s,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJJU010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00045911 SAMN37820957-rid19924363.denovo.026, whole genome shotgun sequence	12491..12928	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJJU010000126.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00045911 SAMN37820957-rid19924363.guided.030, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJJU010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00045911 SAMN37820957-rid19924363.denovo.096, whole genome shotgun sequence	1480..1610																																																						avrA	DAQJJU010000012.1	99474..100343	98.966	870	0						
GCA_032928155.1_PDT001950613.1_genomic.fna	Salmonella_enterica	0.5208	335.354 KB	5	aroC_115,dnaN_75,hemD_8,hisD_115,purE_2,sucA_116,thrA_110	314	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_115	dnaN	100	100	dnaN_75	hemD	100	100	hemD_8	hisD	100	100	hisD_115	purE	100	100	purE_2	sucA	100	100	sucA_116	thrA	100	100	thrA_110	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJJX010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023682 SAMN37820290-rid19920123.denovo.02, whole genome shotgun sequence	159070..159507	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQJJX010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023682 SAMN37820290-rid19920123.guided.26, whole genome shotgun sequence	16445..16882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJJX010000008.1	39484..40353	98.851	870	0						
GCA_032928175.1_PDT001950617.1_genomic.fna	Salmonella_enterica	0.5218	172.266 KB	11	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJJT010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045880 SAMN37820956-rid19927003.denovo.11, whole genome shotgun sequence	15469..15906	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJJT010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00045880 SAMN37820956-rid19927003.guided.13, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJJT010000007.1	108043..108912	99.77	870	0						
GCA_032928195.1_PDT001950615.1_genomic.fna	Salmonella_enterica	0.5219	96.268 KB	14	aroC_99,dnaN_175,hemD_46,hisD_11,purE_111,sucA_180,thrA_1	580	3,10:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_99	dnaN	100	100	dnaN_175	hemD	100	100	hemD_46	hisD	100	100	hisD_11	purE	100	100	purE_111	sucA	100	100	sucA_180	thrA	100	100	thrA_1	3,10	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Orion		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAQJJV010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orion isolate AUSMDU00046097 SAMN37820958-rid19922923.denovo.009, whole genome shotgun sequence	48285..48722	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAQJJV010000110.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orion isolate AUSMDU00046097 SAMN37820958-rid19922923.guided.050, whole genome shotgun sequence	9025..9462	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032928215.1_PDT001950614.1_genomic.fna	Salmonella_enterica	0.5224	123.652 KB	14	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	1	Col(pHAD28)	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJJW010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023637 SAMN37820289-rid19923733.denovo.27, whole genome shotgun sequence	52295..52732	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJJW010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023637 SAMN37820289-rid19923733.guided.59, whole genome shotgun sequence	7577..8014	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	DAQJJW010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023637 SAMN37820289-rid19923733.denovo.64, whole genome shotgun sequence	2341..3540	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQJJW010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023637 SAMN37820289-rid19923733.guided.72, whole genome shotgun sequence	518..1717	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	Col(pHAD28)	92.5	120 / 131	DAQJJW010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023637 SAMN37820289-rid19923733.denovo.78, whole genome shotgun sequence	1958..2077																																																						avrA	DAQJJW010000009.1	39539..40408	99.31	870	0						
GCA_032928235.1_PDT001950611.1_genomic.fna	Salmonella_enterica	0.5196	293.851 KB	6	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJKA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00023739 SAMN37820292-rid19925543.denovo.01, whole genome shotgun sequence	494300..494737	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJKA010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00023739 SAMN37820292-rid19925543.guided.17, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJKA010000004.1	173998..174867	98.966	870	0						
GCA_032928255.1_PDT001950612.1_genomic.fna	Salmonella_enterica	0.522	114.13 KB	14	aroC_14,dnaN_210,hemD_8,hisD_14,purE_38,sucA_19,thrA_102	1792	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	100	100	hemD_8	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJJZ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00023737 SAMN37820291-rid19923723.denovo.09, whole genome shotgun sequence	81958..82395	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJJZ010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00023737 SAMN37820291-rid19923723.guided.23, whole genome shotgun sequence	42397..42834	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	DAQJJZ010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00023737 SAMN37820291-rid19923723.denovo.70, whole genome shotgun sequence	519..711																																																						avrA	DAQJJZ010000005.1	95175..96044	99.54	870	0						
GCA_032928275.1_PDT001950610.1_genomic.fna	Salmonella_enterica	0.5219	305.359 KB	6	aroC_14,dnaN_210,hemD_8,hisD_14,purE_38,sucA_19,thrA_102	1792	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	100	100	hemD_8	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJJY010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00023741 SAMN37820293-rid19921473.denovo.02, whole genome shotgun sequence	471851..472288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJJY010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00023741 SAMN37820293-rid19921473.guided.21, whole genome shotgun sequence	38398..38835	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	DAQJJY010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00023741 SAMN37820293-rid19921473.denovo.33, whole genome shotgun sequence	519..711																																																						avrA	DAQJJY010000004.1	150877..151746	99.54	870	0						
GCA_032928295.1_PDT001950608.1_genomic.fna	Salmonella_enterica	0.5189	171.468 KB	10	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	3	aac(6')-Iaa,aac(6')-Iaa,sul1,sul1,dfrA1,dfrA1	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJKC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00023892 SAMN37820296-rid19920113.denovo.01, whole genome shotgun sequence	174529..174966	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJKC010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00023892 SAMN37820296-rid19920113.guided.20, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	DAQJKC010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00023892 SAMN37820296-rid19920113.denovo.27, whole genome shotgun sequence	57064..57903	Sulfamethoxazole	U12338	sul1	100	840/840	DAQJKC010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00023892 SAMN37820296-rid19920113.guided.36, whole genome shotgun sequence	27315..28154	Sulfamethoxazole	U12338	dfrA1	100	474/474	DAQJKC010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00023892 SAMN37820296-rid19920113.denovo.27, whole genome shotgun sequence	55546..56019	Trimethoprim	X00926	dfrA1	100	474/474	DAQJKC010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00023892 SAMN37820296-rid19920113.guided.36, whole genome shotgun sequence	25797..26270	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJKC010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00023892 SAMN37820296-rid19920113.denovo.49, whole genome shotgun sequence	1480..1610	enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJKC010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00023892 SAMN37820296-rid19920113.denovo.54, whole genome shotgun sequence	547..675		enterobacteriales	Col440I	94.74	114 / 114	DAQJKC010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00023892 SAMN37820296-rid19920113.denovo.56, whole genome shotgun sequence	787..900																																									avrA	DAQJKC010000020.1	39536..40405	98.966	870	0						
GCA_032928315.1_PDT001950609.1_genomic.fna	Salmonella_enterica	0.5217	477.353 KB	4	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64!,purE_64!,sucA_64,thrA_67	Unknown	8:i:z6	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA7,aac(3)-Id,aac(6')-Iaa,aadA7,aac(3)-Id,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	2	Col(pHAD28),ColpVC	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64!	purE	100	100	purE_64!	sucA	100	100	sucA_64	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJKB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.denovo.01, whole genome shotgun sequence	378431..378868	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQJKB010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.denovo.15, whole genome shotgun sequence	70021..70857	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQJKB010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.denovo.15, whole genome shotgun sequence	70857..71660	Streptomycin	AF321551	aadA7	100	798/798	DAQJKB010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.denovo.15, whole genome shotgun sequence	56035..56832	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJKB010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.denovo.15, whole genome shotgun sequence	55483..55959	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	DAQJKB010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.guided.20, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQJKB010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.guided.23, whole genome shotgun sequence	24829..25626	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJKB010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.guided.23, whole genome shotgun sequence	24277..24753	Gentamicin, Astromicin, Fortimicin	AB114632	aph(6)-Id	100	837/837	DAQJKB010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.guided.27, whole genome shotgun sequence	10630..11466	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQJKB010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.guided.27, whole genome shotgun sequence	11466..12269	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQJKB010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.denovo.33, whole genome shotgun sequence	408..1268	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJKB010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.guided.32, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	DAQJKB010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.denovo.15, whole genome shotgun sequence	57337..58176	Sulfamethoxazole	U12338	sul1	100	840/840	DAQJKB010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.guided.23, whole genome shotgun sequence	26131..26970	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQJKB010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.denovo.15, whole genome shotgun sequence	65082..66281	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQJKB010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.guided.27, whole genome shotgun sequence	5691..6890	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	Col(pHAD28)	90.08	131 / 131	DAQJKB010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.denovo.30, whole genome shotgun sequence	254..384	enterobacteriales	ColpVC	98.96	193 / 193	DAQJKB010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023882 SAMN37820295-rid19926993.denovo.34, whole genome shotgun sequence	192..384																																																avrA	DAQJKB010000009.1	39537..40406	99.31	870	0						
GCA_032928335.1_PDT001950602.1_genomic.fna	Salmonella_enterica	0.5215	222.953 KB	7	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJKE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00023959 SAMN37820302-rid19923703.denovo.01, whole genome shotgun sequence	377639..378076	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJKE010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00023959 SAMN37820302-rid19923703.guided.26, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032928345.1_PDT001950604.1_genomic.fna	Salmonella_enterica	0.5225	192.972 KB	9	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJKD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00023936 SAMN37820300-rid19923713.denovo.01, whole genome shotgun sequence	259681..260118	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJKD010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00023936 SAMN37820300-rid19923713.guided.37, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJKD010000004.1	95271..96140	99.425	870	0						
GCA_032928375.1_PDT001950594.1_genomic.fna	Salmonella_enterica	0.5212	212.162 KB	9	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJKL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00024150 SAMN37820309-rid19923693.denovo.01, whole genome shotgun sequence	96071..96508	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJKL010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00024150 SAMN37820309-rid19923693.guided.28, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032928395.1_PDT001950593.1_genomic.fna	Salmonella_enterica	0.5219	641.018 KB	4	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJKM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00024152 SAMN37820310-rid19920083.denovo.01, whole genome shotgun sequence	346602..347039	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJKM010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00024152 SAMN37820310-rid19920083.guided.12, whole genome shotgun sequence	13715..14152	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJKM010000004.1	95271..96140	99.425	870	0						
GCA_032928415.1_PDT001950590.1_genomic.fna	Salmonella_enterica	0.5217	289.309 KB	6	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJKP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00024249 SAMN37820313-rid19921453.denovo.01, whole genome shotgun sequence	552137..552574	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJKP010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00024249 SAMN37820313-rid19921453.guided.16, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032928435.1_PDT001950589.1_genomic.fna	Salmonella_enterica	0.5192	180.39 KB	8	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQJKR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00021532 SAMN37820206-rid19926953.denovo.01, whole genome shotgun sequence	377104..377541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQJKR010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00021532 SAMN37820206-rid19926953.guided.24, whole genome shotgun sequence	703..1140	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJKR010000011.1	43879..44747	99.425	870	0						
GCA_032928455.1_PDT001950596.1_genomic.fna	Salmonella_enterica	0.5212	182.244 KB	8	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,tet(M),tet(A),tet(M),tet(A)	1	parC_p.T57S	2	Col440I,Col440II	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJKJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00024037 SAMN37820307-rid19924343.denovo.01, whole genome shotgun sequence	422130..422567	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJKJ010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00024037 SAMN37820307-rid19924343.guided.34, whole genome shotgun sequence	10140..10577	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQJKJ010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00024037 SAMN37820307-rid19924343.denovo.51, whole genome shotgun sequence	991..1851	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJKJ010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00024037 SAMN37820307-rid19924343.guided.49, whole genome shotgun sequence	1032..1892	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(M)	99.9	1920/1920	DAQJKJ010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00024037 SAMN37820307-rid19924343.denovo.45, whole genome shotgun sequence	3867..5786	Doxycycline, Tetracycline, Minocycline	X75073	tet(A)	99.92	1200/1200	DAQJKJ010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00024037 SAMN37820307-rid19924343.denovo.50, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(M)	99.9	1920/1920	DAQJKJ010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00024037 SAMN37820307-rid19924343.guided.44, whole genome shotgun sequence	3908..5827	Doxycycline, Tetracycline, Minocycline	X75073	tet(A)	99.92	1200/1200	DAQJKJ010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00024037 SAMN37820307-rid19924343.guided.48, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	92.98	114 / 114	DAQJKJ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00024037 SAMN37820307-rid19924343.denovo.54, whole genome shotgun sequence	571..684	enterobacteriales	Col440II	97.16	282 / 282	DAQJKJ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00024037 SAMN37820307-rid19924343.denovo.52, whole genome shotgun sequence	806..1087																																																avrA	DAQJKJ010000006.1	60666..61532	98.966	870	0						
GCA_032928475.1_PDT001950597.1_genomic.fna	Salmonella_enterica	0.5211	214.124 KB	8	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJKI010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00023985 SAMN37820306-rid19926963.denovo.05, whole genome shotgun sequence	133871..134308	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJKI010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00023985 SAMN37820306-rid19926963.guided.20, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032928495.1_PDT001950601.1_genomic.fna	Salmonella_enterica	0.5215	156.185 KB	10	aroC_168,dnaN_14,hemD_15,hisD_559,purE_5,sucA_90,thrA_12	2033	-:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_168	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_559	purE	100	100	purE_5	sucA	100	100	sucA_90	thrA	100	100	thrA_12	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJKF010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00023971 SAMN37820303-rid19925533.denovo.03, whole genome shotgun sequence	37891..38328	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJKF010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00023971 SAMN37820303-rid19925533.guided.27, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	DAQJKF010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00023971 SAMN37820303-rid19925533.denovo.08, whole genome shotgun sequence	147256..147678	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQJKF010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00023971 SAMN37820303-rid19925533.guided.41, whole genome shotgun sequence	22212..22634	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJKF010000002.1	140304..141173	99.655	870	0						
GCA_032928515.1_PDT001950600.1_genomic.fna	Salmonella_enterica	0.5209	187.146 KB	8	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJKG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00021527 SAMN37820205-rid19921463.denovo.01, whole genome shotgun sequence	378430..378867	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJKG010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00021527 SAMN37820205-rid19921463.guided.15, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032928535.1_PDT001950598.1_genomic.fna	Salmonella_enterica	0.5219	361.922 KB	6	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJKH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00023979 SAMN37820305-rid19920093.denovo.01, whole genome shotgun sequence	136728..137165	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJKH010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00023979 SAMN37820305-rid19920093.guided.18, whole genome shotgun sequence	42411..42848	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJKH010000005.1	212818..213684	99.08	870	0						
GCA_032928555.1_PDT001950591.1_genomic.fna	Salmonella_enterica	0.5215	200.623 KB	7	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJKN010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00024172 SAMN37820312-rid19925523.denovo.04, whole genome shotgun sequence	148905..149342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJKN010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00024172 SAMN37820312-rid19925523.guided.25, whole genome shotgun sequence	7298..7735	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQJKN010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00024172 SAMN37820312-rid19925523.denovo.35, whole genome shotgun sequence	3345..3457																																																						avrA	DAQJKN010000001.1	606229..607098	99.195	870	0						
GCA_032928575.1_PDT001950595.1_genomic.fna	Salmonella_enterica	0.5223	234.661 KB	6	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJKK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00024097 SAMN37820308-rid19922903.denovo.01, whole genome shotgun sequence	137034..137471	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJKK010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00024097 SAMN37820308-rid19922903.guided.28, whole genome shotgun sequence	10446..10883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJKK010000008.1	39591..40457	98.966	870	0						
GCA_032928605.1_PDT001950592.1_genomic.fna	Salmonella_enterica	0.5204	258.705 KB	8	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJKO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00024158 SAMN37820311-rid19923683.denovo.01, whole genome shotgun sequence	114342..114779	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJKO010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00024158 SAMN37820311-rid19923683.guided.30, whole genome shotgun sequence	15409..15846	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJKO010000007.1	140191..141060	99.54	870	0						
GCA_032928635.1_PDT001950586.1_genomic.fna	Salmonella_enterica	0.5215	186.964 KB	9	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJKS010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00024276 SAMN37820316-rid19924333.denovo.02, whole genome shotgun sequence	171824..172261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJKS010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00024276 SAMN37820316-rid19924333.guided.24, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032928655.1_PDT001950587.1_genomic.fna	Salmonella_enterica	0.5215	223.899 KB	8	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJKQ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024253 SAMN37820315-rid19926943.denovo.14, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJKQ010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024253 SAMN37820315-rid19926943.guided.29, whole genome shotgun sequence	14015..14452	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJKQ010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024253 SAMN37820315-rid19926943.denovo.45, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJKQ010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024253 SAMN37820315-rid19926943.denovo.46, whole genome shotgun sequence	3345..3457																																																											
GCA_032928675.1_PDT001950585.1_genomic.fna	Salmonella_enterica	0.5209	290.853 KB	7	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJKT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00024291 SAMN37820317-rid19922893.denovo.01, whole genome shotgun sequence	133995..134432	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJKT010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00024291 SAMN37820317-rid19922893.guided.25, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJKT010000006.1	140191..141060	99.54	870	0						
GCA_032928695.1_PDT001950583.1_genomic.fna	Salmonella_enterica	0.5213	221.306 KB	8	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJKV010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00024365 SAMN37820319-rid19921443.denovo.03, whole genome shotgun sequence	259070..259507	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJKV010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00024365 SAMN37820319-rid19921443.guided.31, whole genome shotgun sequence	31087..31524	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJKV010000005.1	94983..95852	99.77	870	0						
GCA_032928715.1_PDT001950584.1_genomic.fna	Salmonella_enterica	0.52	236.248 KB	7	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJKW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00024293 SAMN37820318-rid19925513.denovo.01, whole genome shotgun sequence	376040..376477	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJKW010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00024293 SAMN37820318-rid19925513.guided.28, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQJKW010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00024293 SAMN37820318-rid19925513.denovo.36, whole genome shotgun sequence	2543..2673	enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJKW010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00024293 SAMN37820318-rid19925513.denovo.38, whole genome shotgun sequence	547..675																																																avrA	DAQJKW010000010.1	145734..146603	98.966	870	0						
GCA_032928735.1_PDT001950582.1_genomic.fna	Salmonella_enterica	0.521	173.317 KB	9	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJKU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00024405 SAMN37820320-rid19926933.denovo.01, whole genome shotgun sequence	134062..134499	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJKU010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00024405 SAMN37820320-rid19926933.guided.15, whole genome shotgun sequence	15686..16123	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJKU010000009.1	81536..82402	99.08	870	0						
GCA_032928755.1_PDT001950581.1_genomic.fna	Salmonella_enterica	0.5208	225.036 KB	8	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJKY010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00024525 SAMN37820321-rid19925503.denovo.02, whole genome shotgun sequence	159519..159956	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJKY010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00024525 SAMN37820321-rid19925503.guided.37, whole genome shotgun sequence	2401..2838	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJKY010000008.1	94142..95011	99.54	870	0						
GCA_032928775.1_PDT001950579.1_genomic.fna	Salmonella_enterica	0.5205	168.603 KB	10	aroC_6,dnaN_13,hemD_3,hisD_381,purE_2,sucA_19,thrA_338	2756	30:y:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_13	hemD	100	100	hemD_3	hisD	100	100	hisD_381	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_338	30	y	1,2	Salmonella enterica subspecies enterica (subspecies I)	Matopeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJKX010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Matopeni isolate AUSMDU00024580 SAMN37820323-rid19925493.denovo.04, whole genome shotgun sequence	134041..134478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJKX010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Matopeni isolate AUSMDU00024580 SAMN37820323-rid19925493.guided.14, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJKX010000006.1	146550..147419	99.77	870	0						
GCA_032928795.1_PDT001950580.1_genomic.fna	Salmonella_enterica	0.521	195.772 KB	8	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJKZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00024554 SAMN37820322-rid19921433.denovo.01, whole genome shotgun sequence	134460..134897	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJKZ010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00024554 SAMN37820322-rid19921433.guided.37, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJKZ010000007.1	140191..141060	99.54	870	0						
GCA_032928815.1_PDT001950578.1_genomic.fna	Salmonella_enterica	0.5209	370.942 KB	5	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJLB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00021533 SAMN37820207-rid19920063.denovo.01, whole genome shotgun sequence	613933..614370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJLB010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00021533 SAMN37820207-rid19920063.guided.19, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJLB010000003.1	169918..170787	99.77	870	0						
GCA_032928835.1_PDT001950577.1_genomic.fna	Salmonella_enterica	0.5226	134.198 KB	12	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJLA010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00027320 SAMN37820411-rid19926923.denovo.02, whole genome shotgun sequence	145223..145660	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJLA010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00027320 SAMN37820411-rid19926923.guided.44, whole genome shotgun sequence	23338..23775	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJLA010000015.1	39472..40341	99.77	870	0						
GCA_032928855.1_PDT001950576.1_genomic.fna	Salmonella_enterica	0.5223	96.854 KB	16	aroC_117,dnaN_14,hemD_23,hisD_127,purE_6,sucA_7,thrA_22	462	-:k:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_117	dnaN	100	100	dnaN_14	hemD	100	100	hemD_23	hisD	100	100	hisD_127	purE	100	100	purE_6	sucA	100	100	sucA_7	thrA	100	100	thrA_22	-	k	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJLF010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00027322 SAMN37820412-rid19924323.denovo.29, whole genome shotgun sequence	15459..15896	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJLF010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00027322 SAMN37820412-rid19924323.guided.54, whole genome shotgun sequence	13723..14160	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJLF010000011.1	84068..84937	99.77	870	0						
GCA_032928875.1_PDT001950575.1_genomic.fna	Salmonella_enterica	0.521	150.64 KB	13	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJLC010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00027323 SAMN37820413-rid19922883.denovo.43, whole genome shotgun sequence	12437..12874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJLC010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00027323 SAMN37820413-rid19922883.guided.46, whole genome shotgun sequence	16185..16622	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJLC010000001.1	180366..181248	98.075	883	0						
GCA_032928895.1_PDT001950574.1_genomic.fna	Salmonella_enterica	0.5195	170.66 KB	11	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),IncFIB(K),IncR	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJLE010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00021693 SAMN37820216-rid19925483.denovo.02, whole genome shotgun sequence	148904..149341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJLE010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00021693 SAMN37820216-rid19925483.guided.23, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJLE010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00021693 SAMN37820216-rid19925483.denovo.48, whole genome shotgun sequence	557..687	enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJLE010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00021693 SAMN37820216-rid19925483.denovo.51, whole genome shotgun sequence	547..675		enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQJLE010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00021693 SAMN37820216-rid19925483.denovo.44, whole genome shotgun sequence	981..1540		enterobacteriales	IncR	99.6	251 / 251	DAQJLE010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00021693 SAMN37820216-rid19925483.denovo.53, whole genome shotgun sequence	555..805																																		avrA	DAQJLE010000001.1	107320..108189	99.195	870	0						
GCA_032928915.1_PDT001950573.1_genomic.fna	Salmonella_enterica	0.5188	97.194 KB	19	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJLD010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00027330 SAMN37820414-rid19921423.denovo.12, whole genome shotgun sequence	52500..52937	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJLD010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00027330 SAMN37820414-rid19921423.guided.43, whole genome shotgun sequence	39272..39709	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJLD010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00027330 SAMN37820414-rid19921423.denovo.49, whole genome shotgun sequence	19822..20148	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJLD010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00027330 SAMN37820414-rid19921423.denovo.66, whole genome shotgun sequence	2842..3471																																																avrA	DAQJLD010000007.1	39483..40352	99.77	870	0						
GCA_032928935.1_PDT001950572.1_genomic.fna	Salmonella_enterica	0.5214	121.443 KB	14	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJLG010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00027354 SAMN37820415-rid19926913.denovo.26, whole genome shotgun sequence	12553..12990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJLG010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00027354 SAMN37820415-rid19926913.guided.30, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJLG010000005.1	114821..115690	99.77	870	0						
GCA_032928955.1_PDT001950570.1_genomic.fna	Salmonella_enterica	0.5204	123.13 KB	13	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	16:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	16	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Orientalis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJLH010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00027500 SAMN37820417-rid19921413.denovo.27, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJLH010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00027500 SAMN37820417-rid19921413.guided.45, whole genome shotgun sequence	16429..16866	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQJLH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00027500 SAMN37820417-rid19921413.denovo.01, whole genome shotgun sequence	151579..152002	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQJLH010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00027500 SAMN37820417-rid19921413.guided.64, whole genome shotgun sequence	4824..5247	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJLH010000007.1	124916..125785	99.31	870	0						
GCA_032928975.1_PDT001950568.1_genomic.fna	Salmonella_enterica	0.5224	67.829 KB	23	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJLJ010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00027518 SAMN37820419-rid19920053.denovo.020, whole genome shotgun sequence	48287..48724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJLJ010000138.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00027518 SAMN37820419-rid19920053.guided.027, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJLJ010000105.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00027518 SAMN37820419-rid19920053.denovo.108, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJLJ010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00027518 SAMN37820419-rid19920053.denovo.109, whole genome shotgun sequence	3345..3457																																																											
GCA_032928995.1_PDT001950569.1_genomic.fna	Salmonella_enterica	0.5218	174.688 KB	8	aroC_117,dnaN_14,hemD_23,hisD_127,purE_6,sucA_7,thrA_22	462	-:k:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_117	dnaN	100	100	dnaN_14	hemD	100	100	hemD_23	hisD	100	100	hisD_127	purE	100	100	purE_6	sucA	100	100	sucA_7	thrA	100	100	thrA_22	-	k	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJLI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00027511 SAMN37820418-rid19925463.denovo.01, whole genome shotgun sequence	484513..484950	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJLI010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00027511 SAMN37820418-rid19925463.guided.19, whole genome shotgun sequence	16459..16896	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJLI010000007.1	147112..147981	99.77	870	0						
GCA_032929015.1_PDT001950567.1_genomic.fna	Salmonella_enterica	0.5216	89.469 KB	18	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJLM010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00027526 SAMN37820420-rid19926903.denovo.013, whole genome shotgun sequence	52258..52695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJLM010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00027526 SAMN37820420-rid19926903.guided.036, whole genome shotgun sequence	14536..14973	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQJLM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00027526 SAMN37820420-rid19926903.denovo.051, whole genome shotgun sequence	19215..19356																																																						avrA	DAQJLM010000024.1	43537..44403	99.08	870	0						
GCA_032929035.1_PDT001950566.1_genomic.fna	Salmonella_enterica	0.5217	232.597 KB	6	aroC_16,dnaN_487,hemD_20,hisD_18,purE_8,sucA_447,thrA_18	2299	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_487	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_447	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJLL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00027543 SAMN37820421-rid19925453.denovo.01, whole genome shotgun sequence	136684..137121	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJLL010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00027543 SAMN37820421-rid19925453.guided.26, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJLL010000012.1	39591..40457	98.966	870	0						
GCA_032929055.1_PDT001950565.1_genomic.fna	Salmonella_enterica	0.521	151.939 KB	11	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJLO010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00027613 SAMN37820422-rid19922873.denovo.02, whole genome shotgun sequence	256559..256996	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJLO010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00027613 SAMN37820422-rid19922873.guided.22, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJLO010000005.1	149117..149986	99.54	870	0						
GCA_032929075.1_PDT001950564.1_genomic.fna	Salmonella_enterica	0.5227	156.151 KB	10	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJLK010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00027751 SAMN37820423-rid19925443.denovo.05, whole genome shotgun sequence	108509..108946	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJLK010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00027751 SAMN37820423-rid19925443.guided.36, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJLK010000011.1	60951..61820	99.425	870	0						
GCA_032929095.1_PDT001950562.1_genomic.fna	Salmonella_enterica	0.5186	110.957 KB	14	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJLP010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00027759 SAMN37820424-rid19926893.denovo.03, whole genome shotgun sequence	145223..145660	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJLP010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00027759 SAMN37820424-rid19926893.guided.14, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJLP010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00027759 SAMN37820424-rid19926893.denovo.20, whole genome shotgun sequence	59215..59541	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJLP010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00027759 SAMN37820424-rid19926893.denovo.20, whole genome shotgun sequence	74405..75034																																																avrA	DAQJLP010000010.1	37912..38781	99.77	870	0						
GCA_032929115.1_PDT001950563.1_genomic.fna	Salmonella_enterica	0.5215	178.192 KB	10	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJLN010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00021699 SAMN37820217-rid19921403.denovo.13, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJLN010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00021699 SAMN37820217-rid19921403.guided.24, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJLN010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00021699 SAMN37820217-rid19921403.denovo.50, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJLN010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00021699 SAMN37820217-rid19921403.denovo.51, whole genome shotgun sequence	3345..3457																																																											
GCA_032929135.1_PDT001950560.1_genomic.fna	Salmonella_enterica	0.5229	84.021 KB	17	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJLQ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00027807 SAMN37820426-rid19922863.denovo.47, whole genome shotgun sequence	14068..14505	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJLQ010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00027807 SAMN37820426-rid19922863.guided.63, whole genome shotgun sequence	7577..8014	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJLQ010000003.1	95271..96140	99.425	870	0						
GCA_032929155.1_PDT001950559.1_genomic.fna	Salmonella_enterica	0.5209	271.159 KB	6	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJLR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00027820 SAMN37820427-rid19926883.denovo.01, whole genome shotgun sequence	480539..480976	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJLR010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00027820 SAMN37820427-rid19926883.guided.26, whole genome shotgun sequence	33754..34191	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJLR010000008.1	148751..149620	99.77	870	0						
GCA_032929175.1_PDT001950556.1_genomic.fna	Salmonella_enterica	0.5208	150.565 KB	10	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	16:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	16	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Orientalis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJLU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00028095 SAMN37820430-rid19920033.denovo.01, whole genome shotgun sequence	20859..21296	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJLU010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00028095 SAMN37820430-rid19920033.guided.38, whole genome shotgun sequence	16429..16866	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQJLU010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00028095 SAMN37820430-rid19920033.denovo.04, whole genome shotgun sequence	150172..150595	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQJLU010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00028095 SAMN37820430-rid19920033.guided.43, whole genome shotgun sequence	16000..16423	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJLU010000007.1	179936..180805	99.31	870	0						
GCA_032929195.1_PDT001950558.1_genomic.fna	Salmonella_enterica	0.5211	152.08 KB	11	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJLS010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00027827 SAMN37820428-rid19920043.denovo.11, whole genome shotgun sequence	62437..62874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJLS010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00027827 SAMN37820428-rid19920043.guided.30, whole genome shotgun sequence	18857..19294	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJLS010000005.1	148821..149690	99.77	870	0						
GCA_032929205.1_PDT001950557.1_genomic.fna	Salmonella_enterica	0.5211	179.957 KB	9	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJLT010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00027828 SAMN37820429-rid19927563.denovo.03, whole genome shotgun sequence	145116..145553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJLT010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00027828 SAMN37820429-rid19927563.guided.23, whole genome shotgun sequence	11574..12011	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJLT010000007.1	174343..175212	99.77	870	0						
GCA_032929235.1_PDT001950555.1_genomic.fna	Salmonella_enterica	0.5219	469.579 KB	5	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJLV010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00028096 SAMN37820431-rid19922853.denovo.02, whole genome shotgun sequence	145256..145693	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJLV010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00028096 SAMN37820431-rid19922853.guided.14, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJLV010000006.1	148792..149660	99.655	870	0						
GCA_032929275.1_PDT001950553.1_genomic.fna	Salmonella_enterica	0.5221	165.438 KB	8	aroC_117,dnaN_14,hemD_23,hisD_127,purE_151,sucA_7,thrA_22	501	-:k:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_117	dnaN	100	100	dnaN_14	hemD	100	100	hemD_23	hisD	100	100	hisD_127	purE	100	100	purE_151	sucA	100	100	sucA_7	thrA	100	100	thrA_22	-	k	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJLX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00028142 SAMN37820433-rid19921393.denovo.01, whole genome shotgun sequence	543842..544279	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJLX010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00028142 SAMN37820433-rid19921393.guided.37, whole genome shotgun sequence	16459..16896	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJLX010000004.1	178789..179657	99.655	870	0						
GCA_032929315.1_PDT001950552.1_genomic.fna	Salmonella_enterica	0.5213	221.013 KB	9	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncL	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJLY010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00021869 SAMN37820218-rid19926873.denovo.09, whole genome shotgun sequence	136923..137360	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJLY010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00021869 SAMN37820218-rid19926873.guided.30, whole genome shotgun sequence	14119..14556	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncL	96.23	664 / 661	DAQJLY010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00021869 SAMN37820218-rid19926873.denovo.26, whole genome shotgun sequence	34539..35200																																																						avrA	DAQJLY010000004.1	181771..182637	99.08	870	0						
GCA_032929335.1_PDT001950551.1_genomic.fna	Salmonella_enterica	0.5221	115.551 KB	11	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJLZ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00028143 SAMN37820434-rid19921383.denovo.02, whole genome shotgun sequence	221440..221877	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJLZ010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00028143 SAMN37820434-rid19921383.guided.42, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032929355.1_PDT001950547.1_genomic.fna	Salmonella_enterica	0.5212	262.043 KB	7	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15!,purE_15!,sucA_20,thrA_12	Unknown	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pSFO)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15!	purE	100	100	purE_15!	sucA	100	100	sucA_20	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJMB010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00028365 SAMN37820438-rid19923673.denovo.08, whole genome shotgun sequence	72851..73288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJMB010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00028365 SAMN37820438-rid19923673.guided.24, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSFO)	95.04	262 / 258	DAQJMB010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00028365 SAMN37820438-rid19923673.denovo.12, whole genome shotgun sequence	3291..3552																																																						avrA	DAQJMB010000008.1	124247..125116	99.77	870	0						
GCA_032929375.1_PDT001950548.1_genomic.fna	Salmonella_enterica	0.5217	197.074 KB	8	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJMA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00028333 SAMN37820437-rid19920023.denovo.01, whole genome shotgun sequence	12491..12928	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJMA010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00028333 SAMN37820437-rid19920023.guided.27, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJMA010000011.1	39591..40457	98.966	870	0						
GCA_032929395.1_PDT001950546.1_genomic.fna	Salmonella_enterica	0.5212	183.175 KB	10	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pSFO)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJMD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00028367 SAMN37820439-rid19920013.denovo.01, whole genome shotgun sequence	194524..194961	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJMD010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00028367 SAMN37820439-rid19920013.guided.25, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSFO)	95.04	262 / 258	DAQJMD010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00028367 SAMN37820439-rid19920013.denovo.15, whole genome shotgun sequence	3288..3549																																																						avrA	DAQJMD010000007.1	124265..125134	99.77	870	0						
GCA_032929415.1_PDT001950545.1_genomic.fna	Salmonella_enterica	0.5186	100.721 KB	14	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJMC010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030770 SAMN37820526-rid19921373.denovo.27, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJMC010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030770 SAMN37820526-rid19921373.guided.32, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJMC010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030770 SAMN37820526-rid19921373.denovo.04, whole genome shotgun sequence	89250..89576	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJMC010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030770 SAMN37820526-rid19921373.denovo.04, whole genome shotgun sequence	104442..105071																																																avrA	DAQJMC010000038.1	39483..40352	99.77	870	0						
GCA_032929435.1_PDT001950544.1_genomic.fna	Salmonella_enterica	0.5216	88.803 KB	15	aroC_2,dnaN_2,hemD_9,hisD_7,purE_105,sucA_19,thrA_86	2039	-:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_9	hisD	100	100	hisD_7	purE	100	100	purE_105	sucA	100	100	sucA_19	thrA	100	100	thrA_86	-	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:l,v:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJME010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00030773 SAMN37820527-rid19925403.denovo.001, whole genome shotgun sequence	12518..12955	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQJME010000117.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00030773 SAMN37820527-rid19925403.guided.053, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJME010000007.1	121314..122183	99.655	870	0						
GCA_032929455.1_PDT001950543.1_genomic.fna	Salmonella_enterica	0.5213	183.371 KB	7	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJMF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030776 SAMN37820528-rid19920003.denovo.01, whole genome shotgun sequence	262307..262744	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJMF010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030776 SAMN37820528-rid19920003.guided.16, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJMF010000004.1	121170..122036	99.08	870	0						
GCA_032929475.1_PDT001950542.1_genomic.fna	Salmonella_enterica	0.518	214.107 KB	7	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJMG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030783 SAMN37820529-rid19926863.denovo.01, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJMG010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030783 SAMN37820529-rid19926863.guided.15, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJMG010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030783 SAMN37820529-rid19926863.denovo.08, whole genome shotgun sequence	28070..28396	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJMG010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030783 SAMN37820529-rid19926863.denovo.08, whole genome shotgun sequence	12577..13206																																																avrA	DAQJMG010000007.1	123162..124031	99.77	870	0						
GCA_032929495.1_PDT001950541.1_genomic.fna	Salmonella_enterica	0.5222	165.724 KB	9	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJMH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00030788 SAMN37820530-rid19919993.denovo.01, whole genome shotgun sequence	480508..480945	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJMH010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00030788 SAMN37820530-rid19919993.guided.25, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJMH010000011.1	2249..3119	99.656	871	0						
GCA_032929515.1_PDT001950537.1_genomic.fna	Salmonella_enterica	0.5217	123.593 KB	12	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJMJ010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00021930 SAMN37820228-rid19923663.denovo.05, whole genome shotgun sequence	65160..65597	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJMJ010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00021930 SAMN37820228-rid19923663.guided.39, whole genome shotgun sequence	14710..15147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032929535.1_PDT001950540.1_genomic.fna	Salmonella_enterica	0.5208	182.092 KB	8	aroC_99,dnaN_175,hemD_46,hisD_11,purE_111,sucA_180,thrA_1	580	3,10:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_99	dnaN	100	100	dnaN_175	hemD	100	100	hemD_46	hisD	100	100	hisD_11	purE	100	100	purE_111	sucA	100	100	sucA_180	thrA	100	100	thrA_1	3,10	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Orion		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAQJMI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orion isolate AUSMDU00030834 SAMN37820531-rid19922833.denovo.01, whole genome shotgun sequence	290876..291313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAQJMI010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orion isolate AUSMDU00030834 SAMN37820531-rid19922833.guided.22, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032929555.1_PDT001950534.1_genomic.fna	Salmonella_enterica	0.5223	115.672 KB	13	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJMK010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030933 SAMN37820536-rid19925393.denovo.25, whole genome shotgun sequence	11319..11756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJMK010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030933 SAMN37820536-rid19925393.guided.56, whole genome shotgun sequence	13659..14096	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	DAQJMK010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00030933 SAMN37820536-rid19925393.denovo.62, whole genome shotgun sequence	519..711																																																						avrA	DAQJMK010000012.1	39484..40350	98.966	870	0						
GCA_032929575.1_PDT001950533.1_genomic.fna	Salmonella_enterica	0.5222	121.938 KB	15	aroC_14,dnaN_210,hemD_8,hisD_14,purE_38,sucA_19,thrA_102	1792	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	100	100	hemD_8	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJML010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00031008 SAMN37820537-rid19919963.denovo.05, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJML010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00031008 SAMN37820537-rid19919963.guided.51, whole genome shotgun sequence	9823..10260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJML010000002.1	98919..99788	99.54	870	0						
GCA_032929595.1_PDT001950532.1_genomic.fna	Salmonella_enterica	0.5224	170.914 KB	9	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJMN010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00031010 SAMN37820538-rid19926853.denovo.03, whole genome shotgun sequence	145223..145660	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJMN010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00031010 SAMN37820538-rid19926853.guided.28, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJMN010000005.1	107861..108730	99.655	870	0						
GCA_032929615.1_PDT001950531.1_genomic.fna	Salmonella_enterica	0.5208	170.41 KB	8	aroC_10,dnaN_71,hemD_43,hisD_12,purE_190,sucA_20,thrA_18	808	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_71	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_190	sucA	100	100	sucA_20	thrA	100	100	thrA_18	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJMM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00031037 SAMN37820539-rid19919953.denovo.01, whole genome shotgun sequence	628328..628765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJMM010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00031037 SAMN37820539-rid19919953.guided.19, whole genome shotgun sequence	34219..34656	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(p96A)	99.25	534 / 534	DAQJMM010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00031037 SAMN37820539-rid19919953.denovo.28, whole genome shotgun sequence	16024..16557																																																						avrA	DAQJMM010000005.1	140091..140960	99.54	870	0						
GCA_032929635.1_PDT001950530.1_genomic.fna	Salmonella_enterica	0.5216	212.964 KB	7	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJMP010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00031058 SAMN37820540-rid19922823.denovo.02, whole genome shotgun sequence	145252..145689	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJMP010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00031058 SAMN37820540-rid19922823.guided.11, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJMP010000007.1	39624..40493	99.77	870	0						
GCA_032929655.1_PDT001950529.1_genomic.fna	Salmonella_enterica	0.5213	81.417 KB	18	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJMO010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00031087 SAMN37820541-rid19924303.denovo.016, whole genome shotgun sequence	52382..52819	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJMO010000122.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00031087 SAMN37820541-rid19924303.guided.023, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQJMO010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00031087 SAMN37820541-rid19924303.denovo.098, whole genome shotgun sequence	829..959	enterobacteriales	Col440I	90.27	113 / 114	DAQJMO010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00031087 SAMN37820541-rid19924303.denovo.088, whole genome shotgun sequence	2723..2835																																																											
GCA_032929675.1_PDT001950528.1_genomic.fna	Salmonella_enterica	0.522	77.288 KB	19	aroC_161,dnaN_147,hemD_151,hisD_178,purE_155,sucA_12,thrA_142	2095	9:l,z13:e,n,x	0		0		0		aroC	100	100	aroC_161	dnaN	100	100	dnaN_147	hemD	100	100	hemD_151	hisD	100	100	hisD_178	purE	100	100	purE_155	sucA	100	100	sucA_12	thrA	100	100	thrA_142	9	l,z13	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Napoli		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																		
GCA_032929695.1_PDT001950527.1_genomic.fna	Salmonella_enterica	0.5223	191.059 KB	9	aroC_5,dnaN_14,hemD_6,hisD_12,purE_5,sucA_14,thrA_58	166	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_14	thrA	100	100	thrA_58	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJMR010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00031208 SAMN37820543-rid19923653.denovo.02, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQJMR010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00031208 SAMN37820543-rid19923653.guided.22, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJMR010000003.1	114492..115361	99.655	870	0						
GCA_032929715.1_PDT001950525.1_genomic.fna	Salmonella_enterica	0.5216	272.566 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJMU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00031230 SAMN37820544-rid19921343.denovo.01, whole genome shotgun sequence	727905..728342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJMU010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00031230 SAMN37820544-rid19921343.guided.27, whole genome shotgun sequence	15555..15992	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQJMU010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00031230 SAMN37820544-rid19921343.denovo.32, whole genome shotgun sequence	3849..3979	enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQJMU010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00031230 SAMN37820544-rid19921343.denovo.38, whole genome shotgun sequence	829..959		enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQJMU010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00031230 SAMN37820544-rid19921343.denovo.39, whole genome shotgun sequence	1531..1661		enterobacteriales	Col440I	90.27	113 / 114	DAQJMU010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00031230 SAMN37820544-rid19921343.denovo.33, whole genome shotgun sequence	2723..2835																																		avrA	DAQJMU010000003.1	107559..108428	99.195	870	0						
GCA_032929735.1_PDT001950526.1_genomic.fna	Salmonella_enterica	0.5212	142.735 KB	11	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJMS010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00022045 SAMN37820229-rid19921353.denovo.13, whole genome shotgun sequence	52505..52942	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJMS010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00022045 SAMN37820229-rid19921353.guided.49, whole genome shotgun sequence	10184..10621	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJMS010000005.1	174379..175248	99.77	870	0						
GCA_032929755.1_PDT001950524.1_genomic.fna	Salmonella_enterica	0.5202	200.942 KB	10	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJMT010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00031339 SAMN37820545-rid19925383.denovo.04, whole genome shotgun sequence	101486..101923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJMT010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00031339 SAMN37820545-rid19925383.guided.26, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJMT010000006.1	145223..146092	98.966	870	0						
GCA_032929775.1_PDT001950523.1_genomic.fna	Salmonella_enterica	0.5222	104.389 KB	16	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJMV010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00031472 SAMN37820546-rid19921333.denovo.011, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJMV010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00031472 SAMN37820546-rid19921333.guided.032, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJMV010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00031472 SAMN37820546-rid19921333.denovo.081, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJMV010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00031472 SAMN37820546-rid19921333.denovo.082, whole genome shotgun sequence	3345..3457																																																											
GCA_032929795.1_PDT001950520.1_genomic.fna	Salmonella_enterica	0.5219	90.401 KB	19	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncFIB(K)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	z10	e,n,z15	-	- -:z10:e,n,z15	The input genome cannot be identified as Salmonella. Check the input for taxonomic ID, contamination, or sequencing quality.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJMZ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00031755 SAMN37820549-rid19922813.denovo.023, whole genome shotgun sequence	58484..58921	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJMZ010000122.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00031755 SAMN37820549-rid19922813.guided.050, whole genome shotgun sequence	16358..16795	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQJMZ010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00031755 SAMN37820549-rid19922813.denovo.098, whole genome shotgun sequence	3169..3299	enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJMZ010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00031755 SAMN37820549-rid19922813.denovo.103, whole genome shotgun sequence	547..675		enterobacteriales	IncFIB(K)	99.82	560 / 560	DAQJMZ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00031755 SAMN37820549-rid19922813.denovo.083, whole genome shotgun sequence	4258..4817																																									avrA	DAQJMZ010000007.1	105409..106278	99.195	870	0						
GCA_032929815.1_PDT001950517.1_genomic.fna	Salmonella_enterica	0.5223	52.462 KB	28	aroC_16,dnaN_16,hemD_20,hisD_602,purE_8,sucA_12,thrA_18	2177	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_602	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJNC010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00031986 SAMN37820552-rid19923643.denovo.021, whole genome shotgun sequence	11343..11780	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJNC010000178.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00031986 SAMN37820552-rid19923643.guided.084, whole genome shotgun sequence	5644..6081	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQJNC010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00031986 SAMN37820552-rid19923643.denovo.049, whole genome shotgun sequence	22480..22621																																																						avrA	DAQJNC010000038.1	39484..40350	99.08	870	0						
GCA_032929835.1_PDT001950521.1_genomic.fna	Salmonella_enterica	0.5217	145.697 KB	10	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJMX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00031747 SAMN37820548-rid19919933.denovo.01, whole genome shotgun sequence	383348..383785	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJMX010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00031747 SAMN37820548-rid19919933.guided.14, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJMX010000006.1	98132..99002	99.656	871	0						
GCA_032929855.1_PDT001950522.1_genomic.fna	Salmonella_enterica	0.5214	178.62 KB	9	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJMW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00031726 SAMN37820547-rid19926843.denovo.01, whole genome shotgun sequence	377001..377438	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQJMW010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00031726 SAMN37820547-rid19926843.guided.37, whole genome shotgun sequence	15585..16022	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJMW010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00031726 SAMN37820547-rid19926843.denovo.46, whole genome shotgun sequence	239..369																																																						avrA	DAQJMW010000003.1	148778..149647	99.425	870	0						
GCA_032929875.1_PDT001950518.1_genomic.fna	Salmonella_enterica	0.5201	191.568 KB	7	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJMY010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00031877 SAMN37820551-rid19922803.denovo.20, whole genome shotgun sequence	52309..52746	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJMY010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00031877 SAMN37820551-rid19922803.guided.30, whole genome shotgun sequence	549..986	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJMY010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00031877 SAMN37820551-rid19922803.denovo.42, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJMY010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00031877 SAMN37820551-rid19922803.denovo.43, whole genome shotgun sequence	3345..3457																																																											
GCA_032929895.1_PDT001950515.1_genomic.fna	Salmonella_enterica	0.5215	325.505 KB	6	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,tet(M),tet(A),tet(M),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJNB010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022051 SAMN37820230-rid19921323.denovo.03, whole genome shotgun sequence	269840..270277	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJNB010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022051 SAMN37820230-rid19921323.guided.37, whole genome shotgun sequence	2611..3048	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQJNB010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022051 SAMN37820230-rid19921323.denovo.32, whole genome shotgun sequence	8244..9104	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJNB010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022051 SAMN37820230-rid19921323.guided.33, whole genome shotgun sequence	7923..8783	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(M)	99.9	1920/1920	DAQJNB010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022051 SAMN37820230-rid19921323.denovo.32, whole genome shotgun sequence	4229..6148	Doxycycline, Tetracycline, Minocycline	X75073	tet(A)	99.92	1200/1200	DAQJNB010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022051 SAMN37820230-rid19921323.denovo.35, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(M)	99.9	1920/1920	DAQJNB010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022051 SAMN37820230-rid19921323.guided.33, whole genome shotgun sequence	3908..5827	Doxycycline, Tetracycline, Minocycline	X75073	tet(A)	99.92	1200/1200	DAQJNB010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022051 SAMN37820230-rid19921323.guided.36, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJNB010000002.1	168677..169543	98.966	870	0						
GCA_032929915.1_PDT001950514.1_genomic.fna	Salmonella_enterica	0.5216	382.458 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJND010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00032121 SAMN37820554-rid19925373.denovo.01, whole genome shotgun sequence	476665..477102	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJND010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00032121 SAMN37820554-rid19925373.guided.14, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJND010000008.1	123326..124195	99.655	870	0						
GCA_032929935.1_PDT001950516.1_genomic.fna	Salmonella_enterica	0.5219	167.157 KB	9	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJNA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00032117 SAMN37820553-rid19919923.denovo.01, whole genome shotgun sequence	479820..480257	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJNA010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00032117 SAMN37820553-rid19919923.guided.37, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJNA010000006.1	107441..108310	99.195	870	0						
GCA_032929955.1_PDT001950511.1_genomic.fna	Salmonella_enterica	0.5214	133.126 KB	11	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJNH010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00022249 SAMN37820239-rid19919913.denovo.04, whole genome shotgun sequence	79151..79588	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJNH010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00022249 SAMN37820239-rid19919913.guided.30, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJNH010000012.1	124163..125032	99.77	870	0						
GCA_032929975.1_PDT001950513.1_genomic.fna	Salmonella_enterica	0.5209	275.604 KB	7	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJNE010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00036133 SAMN37820642-rid19921313.denovo.12, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJNE010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00036133 SAMN37820642-rid19921313.guided.20, whole genome shotgun sequence	44244..44681	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJNE010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00036133 SAMN37820642-rid19921313.denovo.42, whole genome shotgun sequence	1380..1572																																																																	
GCA_032929995.1_PDT001950510.1_genomic.fna	Salmonella_enterica	0.5217	134.281 KB	14	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJNG010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00036282 SAMN37820644-rid19922793.denovo.04, whole genome shotgun sequence	52476..52913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJNG010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00036282 SAMN37820644-rid19922793.guided.21, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJNG010000003.1	83492..84362	99.656	871	0						
GCA_032930015.1_PDT001950512.1_genomic.fna	Salmonella_enterica	0.521	307.793 KB	6	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJNF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00036153 SAMN37820643-rid19926833.denovo.01, whole genome shotgun sequence	378398..378835	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJNF010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00036153 SAMN37820643-rid19926833.guided.25, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	97	534 / 534	DAQJNF010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00036153 SAMN37820643-rid19926833.denovo.20, whole genome shotgun sequence	15380..15913																																																						avrA	DAQJNF010000004.1	94148..95017	99.54	870	0						
GCA_032930025.1_PDT001950509.1_genomic.fna	Salmonella_enterica	0.5202	121.532 KB	12	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJNK010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00036283 SAMN37820645-rid19924283.denovo.20, whole genome shotgun sequence	52458..52895	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJNK010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00036283 SAMN37820645-rid19924283.guided.33, whole genome shotgun sequence	24964..25401	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJNK010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00036283 SAMN37820645-rid19924283.denovo.57, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJNK010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00036283 SAMN37820645-rid19924283.denovo.58, whole genome shotgun sequence	3345..3457																																																											
GCA_032930075.1_PDT001950507.1_genomic.fna	Salmonella_enterica	0.5205	96.699 KB	17	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJNJ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00036297 SAMN37820647-rid19926823.denovo.33, whole genome shotgun sequence	12538..12975	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJNJ010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00036297 SAMN37820647-rid19926823.guided.43, whole genome shotgun sequence	44267..44704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJNJ010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00036297 SAMN37820647-rid19926823.denovo.70, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJNJ010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00036297 SAMN37820647-rid19926823.denovo.71, whole genome shotgun sequence	3345..3457																																																											
GCA_032930095.1_PDT001950508.1_genomic.fna	Salmonella_enterica	0.5199	393.106 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	DAQJNI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00036284 SAMN37820646-rid19922783.denovo.01, whole genome shotgun sequence	265863..266300	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	DAQJNI010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00036284 SAMN37820646-rid19922783.guided.17, whole genome shotgun sequence	2544..2981	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJNI010000006.1	107142..108010	99.425	870	0						
GCA_032930115.1_PDT001950504.1_genomic.fna	Salmonella_enterica	0.5212	107.24 KB	15	aroC_680,dnaN_198,hemD_550,hisD_119,purE_219,sucA_119,thrA_118	3498	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_680	dnaN	100	100	dnaN_198	hemD	100	100	hemD_550	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.99	399/438	DAQJNM010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00036362 SAMN37820650-rid19925363.denovo.009, whole genome shotgun sequence	38043..38441	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.99	399/438	DAQJNM010000122.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00036362 SAMN37820650-rid19925363.guided.046, whole genome shotgun sequence	16456..16854	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pN55391)	98.75	560 / 560	DAQJNM010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00036362 SAMN37820650-rid19925363.denovo.044, whole genome shotgun sequence	16768..17327																																																																	
GCA_032930135.1_PDT001950506.1_genomic.fna	Salmonella_enterica	0.5211	104.045 KB	15	aroC_680,dnaN_198,hemD_550,hisD_119,purE_219,sucA_119,thrA_118	3498	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_680	dnaN	100	100	dnaN_198	hemD	100	100	hemD_550	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.99	399/438	DAQJNL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00036313 SAMN37820648-rid19921303.denovo.001, whole genome shotgun sequence	221179..221577	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.99	399/438	DAQJNL010000128.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00036313 SAMN37820648-rid19921303.guided.042, whole genome shotgun sequence	16456..16854	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pN55391)	98.75	560 / 560	DAQJNL010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00036313 SAMN37820648-rid19921303.denovo.069, whole genome shotgun sequence	2327..2886																																																																	
GCA_032930155.1_PDT001950503.1_genomic.fna	Salmonella_enterica	0.5224	126.789 KB	11	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFIB(pHCM2)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJNN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00036426 SAMN37820651-rid19922773.denovo.01, whole genome shotgun sequence	497527..497964	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJNN010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00036426 SAMN37820651-rid19922773.guided.37, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJNN010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00036426 SAMN37820651-rid19922773.denovo.59, whole genome shotgun sequence	557..687	enterobacteriales	IncFIB(pHCM2)	98.63	875 / 875	DAQJNN010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00036426 SAMN37820651-rid19922773.denovo.15, whole genome shotgun sequence	31010..31884																																																											
GCA_032930175.1_PDT001950502.1_genomic.fna	Salmonella_enterica	0.5216	94.319 KB	17	aroC_41,dnaN_13,hemD_10,hisD_12,purE_5,sucA_19,thrA_12	3211	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col8282	aroC	100	100	aroC_41	dnaN	100	100	dnaN_13	hemD	100	100	hemD_10	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJNP010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00036427 SAMN37820652-rid19926813.denovo.050, whole genome shotgun sequence	12562..12999	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJNP010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00036427 SAMN37820652-rid19926813.guided.068, whole genome shotgun sequence	14922..15359	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQJNP010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00036427 SAMN37820652-rid19926813.denovo.086, whole genome shotgun sequence	186..316	enterobacteriales	Col8282	90.1	202 / 207	DAQJNP010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00036427 SAMN37820652-rid19926813.denovo.085, whole genome shotgun sequence	191..392																																																avrA	DAQJNP010000011.1	126454..127323	99.77	870	0						
GCA_032930195.1_PDT001950499.1_genomic.fna	Salmonella_enterica	0.5209	138.239 KB	12	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJNS010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00036500 SAMN37820654-rid19925353.denovo.07, whole genome shotgun sequence	11324..11761	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJNS010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00036500 SAMN37820654-rid19925353.guided.28, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJNS010000005.1	107591..108460	99.54	870	0						
GCA_032930215.1_PDT001950500.1_genomic.fna	Salmonella_enterica	0.5217	101.064 KB	12	aroC_16,dnaN_16,hemD_20,hisD_602,purE_8,sucA_12,thrA_18	2177	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_602	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJNO010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022254 SAMN37820240-rid19922763.denovo.03, whole genome shotgun sequence	133812..134249	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJNO010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022254 SAMN37820240-rid19922763.guided.38, whole genome shotgun sequence	15861..16298	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJNO010000037.1	39484..40350	99.08	870	0						
GCA_032930235.1_PDT001950497.1_genomic.fna	Salmonella_enterica	0.5183	192.166 KB	9	aroC_43,dnaN_47,hemD_49,hisD_16,purE_41,sucA_15,thrA_3	241	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJNQ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00036659 SAMN37820656-rid19926803.denovo.03, whole genome shotgun sequence	52450..52887	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJNQ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00036659 SAMN37820656-rid19926803.guided.27, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJNQ010000007.1	99494..100363	98.966	870	0						
GCA_032930255.1_PDT001950496.1_genomic.fna	Salmonella_enterica	0.5232	195.783 KB	7	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJNR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00036660 SAMN37820657-rid19921283.denovo.01, whole genome shotgun sequence	170314..170751	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJNR010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00036660 SAMN37820657-rid19921283.guided.26, whole genome shotgun sequence	42408..42845	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032930275.1_PDT001950493.1_genomic.fna	Salmonella_enterica	0.5216	180.709 KB	11	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJNU010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00036726 SAMN37820660-rid19921273.denovo.13, whole genome shotgun sequence	12535..12972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJNU010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00036726 SAMN37820660-rid19921273.guided.24, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032930315.1_PDT001950492.1_genomic.fna	Salmonella_enterica	0.5207	189.753 KB	9	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJNV010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00036727 SAMN37820661-rid19926783.denovo.12, whole genome shotgun sequence	89143..89580	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJNV010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00036727 SAMN37820661-rid19926783.guided.31, whole genome shotgun sequence	31217..31654	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJNV010000001.1	152770..153639	99.54	870	0						
GCA_032930335.1_PDT001950490.1_genomic.fna	Salmonella_enterica	0.5212	97.396 KB	17	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_430,thrA_8	1939	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_430	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJNW010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00036840 SAMN37820663-rid19926773.denovo.13, whole genome shotgun sequence	51583..52020	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJNW010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00036840 SAMN37820663-rid19926773.guided.21, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	ColRNAI	90.08	131 / 130	DAQJNW010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00036840 SAMN37820663-rid19926773.denovo.75, whole genome shotgun sequence	3981..4111																																																																	
GCA_032930355.1_PDT001950489.1_genomic.fna	Salmonella_enterica	0.5201	196.753 KB	9	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJNX010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00022277 SAMN37820241-rid19925333.denovo.11, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJNX010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00022277 SAMN37820241-rid19925333.guided.29, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJNX010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00022277 SAMN37820241-rid19925333.denovo.47, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJNX010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00022277 SAMN37820241-rid19925333.denovo.48, whole genome shotgun sequence	3345..3457																																																											
GCA_032930375.1_PDT001950488.1_genomic.fna	Salmonella_enterica	0.5184	184.671 KB	9	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJOA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00036913 SAMN37820664-rid19922743.denovo.01, whole genome shotgun sequence	145223..145660	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJOA010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00036913 SAMN37820664-rid19922743.guided.31, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJOA010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00036913 SAMN37820664-rid19922743.denovo.06, whole genome shotgun sequence	89265..89591	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJOA010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00036913 SAMN37820664-rid19922743.denovo.06, whole genome shotgun sequence	104457..105086																																																avrA	DAQJOA010000024.1	39591..40460	99.77	870	0						
GCA_032930395.1_PDT001950486.1_genomic.fna	Salmonella_enterica	0.5228	146.407 KB	10	aroC_2,dnaN_2,hemD_9,hisD_7,purE_134!,purE_134!,sucA_19*,thrA_18	408*!,5460*!	-:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_9	hisD	100	100	hisD_7	purE	100	100	purE_134!	purE	100	100	purE_134!	sucA	99.8003992015968	100	sucA_19*	-	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:l,v:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJNY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00037066 SAMN37820666-rid19921263.denovo.01, whole genome shotgun sequence	223845..224282	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQJNY010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00037066 SAMN37820666-rid19921263.guided.29, whole genome shotgun sequence	42441..42878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJNY010000014.1	121551..122420	99.655	870	0						
GCA_032930415.1_PDT001950487.1_genomic.fna	Salmonella_enterica	0.5211	291.113 KB	7	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJNZ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00036916 SAMN37820665-rid19926763.denovo.03, whole genome shotgun sequence	137415..137852	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJNZ010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00036916 SAMN37820665-rid19926763.guided.32, whole genome shotgun sequence	15291..15728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJNZ010000004.1	150499..151365	99.08	870	0						
GCA_032930435.1_PDT001950485.1_genomic.fna	Salmonella_enterica	0.5185	130.236 KB	14	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJOB010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00037103 SAMN37820667-rid19926753.denovo.03, whole genome shotgun sequence	145344..145781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJOB010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00037103 SAMN37820667-rid19926753.guided.35, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJOB010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00037103 SAMN37820667-rid19926753.denovo.15, whole genome shotgun sequence	101616..101942	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJOB010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00037103 SAMN37820667-rid19926753.denovo.21, whole genome shotgun sequence	92979..93608																																																avrA	DAQJOB010000014.1	39483..40352	99.77	870	0						
GCA_032930455.1_PDT001950484.1_genomic.fna	Salmonella_enterica	0.521	221.603 KB	8	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJOD010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00037164 SAMN37820668-rid19926743.denovo.02, whole genome shotgun sequence	351297..351734	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJOD010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00037164 SAMN37820668-rid19926743.guided.33, whole genome shotgun sequence	14261..14698	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJOD010000007.1	148861..149730	99.77	870	0						
GCA_032930475.1_PDT001950481.1_genomic.fna	Salmonella_enterica	0.519	111.607 KB	13	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	12	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA2,aadA1,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,floR,cmlA1,qnrS1,qnrS1,sul3,sul2,sul2,sul3,tet(A),tet(M),tet(A),tet(M),dfrA12,dfrA12	2	gyrA_p.D87Y,parC_p.T57S	3	IncFIA(HI1),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJOE010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.denovo.003, whole genome shotgun sequence	137154..137591	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	DAQJOE010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.denovo.067, whole genome shotgun sequence	564..1355	Spectinomycin, Streptomycin	JQ414041	aadA2	99.87	792/792	DAQJOE010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.denovo.067, whole genome shotgun sequence	2969..3760	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	98.63	438/438	DAQJOE010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.guided.050, whole genome shotgun sequence	10146..10583	Amikacin, Tobramycin	NC_003197	aadA2	99.87	792/792	DAQJOE010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.guided.070, whole genome shotgun sequence	1880..2671	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	DAQJOE010000105.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.guided.080, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	blaTEM-1B	100	861/861	DAQJOE010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.denovo.090, whole genome shotgun sequence	145..1005	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJOE010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.guided.089, whole genome shotgun sequence	1010..1870	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	DAQJOE010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.denovo.067, whole genome shotgun sequence	1448..2707	Chloramphenicol	M64556	floR	98.11	1214/1215	DAQJOE010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.denovo.077, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	DAQJOE010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.guided.070, whole genome shotgun sequence	2933..4192	Chloramphenicol	M64556	floR	98.11	1214/1215	DAQJOE010000104.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.guided.079, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	DAQJOE010000105.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.guided.080, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	qnrS1	100	657/657	DAQJOE010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.denovo.072, whole genome shotgun sequence	96..752	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQJOE010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.guided.071, whole genome shotgun sequence	3360..4016	Ciprofloxacin	AB187515	sul3	100	792/792	DAQJOE010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.denovo.065, whole genome shotgun sequence	5632..6423	Sulfamethoxazole	AJ459418	sul2	100	816/816	DAQJOE010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.denovo.084, whole genome shotgun sequence	329..1144	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQJOE010000107.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.guided.083, whole genome shotgun sequence	1898..2713	Sulfamethoxazole	AY034138	sul3	100	792/792	DAQJOE010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.guided.085, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	DAQJOE010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.denovo.075, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	DAQJOE010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.denovo.087, whole genome shotgun sequence	33..1952	Doxycycline, Tetracycline, Minocycline	X04388	tet(A)	99.92	1200/1200	DAQJOE010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.guided.074, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	DAQJOE010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.guided.081, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	DAQJOE010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.denovo.067, whole genome shotgun sequence	4168..4665	Trimethoprim	AM040708	dfrA12	100	498/498	DAQJOE010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.guided.070, whole genome shotgun sequence	975..1472	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																									gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIA(HI1)	100	388 / 388	DAQJOE010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.denovo.031, whole genome shotgun sequence	11168..11555	enterobacteriales	IncHI1A	100	420 / 420	DAQJOE010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.denovo.017, whole genome shotgun sequence	80412..80831		enterobacteriales	IncHI1B(R27)	100	540 / 540	DAQJOE010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022740 SAMN37820259-rid19919883.denovo.017, whole genome shotgun sequence	66796..67335	R27																																								avrA	DAQJOE010000010.1	39583..40449	98.966	870	0						
GCA_032930495.1_PDT001950482.1_genomic.fna	Salmonella_enterica	0.5213	107.148 KB	13	aroC_680,dnaN_198,hemD_550,hisD_119,purE_219,sucA_119,thrA_118	3498	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_680	dnaN	100	100	dnaN_198	hemD	100	100	hemD_550	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.99	399/438	DAQJOF010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00037175 SAMN37820670-rid19927553.denovo.012, whole genome shotgun sequence	57352..57750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.99	399/438	DAQJOF010000117.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00037175 SAMN37820670-rid19927553.guided.036, whole genome shotgun sequence	16456..16854	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pN55391)	98.75	560 / 560	DAQJOF010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00037175 SAMN37820670-rid19927553.denovo.041, whole genome shotgun sequence	2274..2833																																																																	
GCA_032930515.1_PDT001950483.1_genomic.fna	Salmonella_enterica	0.5213	100.616 KB	15	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJOC010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037174 SAMN37820669-rid19922733.denovo.20, whole genome shotgun sequence	52281..52718	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJOC010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037174 SAMN37820669-rid19922733.guided.32, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJOC010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037174 SAMN37820669-rid19922733.denovo.77, whole genome shotgun sequence	1380..1572																																																																	
GCA_032930535.1_PDT001950479.1_genomic.fna	Salmonella_enterica	0.5218	113.589 KB	15	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJOH010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042243 SAMN37820845-rid19925323.denovo.12, whole genome shotgun sequence	51720..52157	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJOH010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042243 SAMN37820845-rid19925323.guided.39, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJOH010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042243 SAMN37820845-rid19925323.denovo.71, whole genome shotgun sequence	1604..1734																																																																	
GCA_032930555.1_PDT001950478.1_genomic.fna	Salmonella_enterica	0.5224	183.151 KB	8	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJOG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00042277 SAMN37820846-rid19922723.denovo.01, whole genome shotgun sequence	480429..480866	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJOG010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00042277 SAMN37820846-rid19922723.guided.29, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJOG010000006.1	83432..84301	99.77	870	0						
GCA_032930575.1_PDT001950477.1_genomic.fna	Salmonella_enterica	0.5215	99.071 KB	16	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJOI010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00042281 SAMN37820847-rid19926733.denovo.11, whole genome shotgun sequence	12546..12983	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJOI010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00042281 SAMN37820847-rid19926733.guided.45, whole genome shotgun sequence	20950..21387	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJOI010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00042281 SAMN37820847-rid19926733.denovo.85, whole genome shotgun sequence	1380..1572																																																																	
GCA_032930595.1_PDT001950475.1_genomic.fna	Salmonella_enterica	0.5223	99.488 KB	15	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJOK010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00042305 SAMN37820849-rid19926723.denovo.27, whole genome shotgun sequence	12559..12996	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJOK010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00042305 SAMN37820849-rid19926723.guided.36, whole genome shotgun sequence	11573..12010	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJOK010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00042305 SAMN37820849-rid19926723.denovo.72, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJOK010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00042305 SAMN37820849-rid19926723.denovo.73, whole genome shotgun sequence	3345..3457																																																											
GCA_032930615.1_PDT001950473.1_genomic.fna	Salmonella_enterica	0.521	128.273 KB	12	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	-:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	-	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJOL010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029786 SAMN37820491-rid19922713.denovo.46, whole genome shotgun sequence	12476..12913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJOL010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029786 SAMN37820491-rid19922713.guided.50, whole genome shotgun sequence	14133..14570	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQJOL010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029786 SAMN37820491-rid19922713.denovo.06, whole genome shotgun sequence	24576..24999	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQJOL010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029786 SAMN37820491-rid19922713.guided.53, whole genome shotgun sequence	17839..18262	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJOL010000012.1	125037..125906	99.31	870	0						
GCA_032930635.1_PDT001950476.1_genomic.fna	Salmonella_enterica	0.5188	146.224 KB	11	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(K),IncFII,IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJOJ010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042296 SAMN37820848-rid19921253.denovo.04, whole genome shotgun sequence	145232..145669	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJOJ010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042296 SAMN37820848-rid19921253.guided.16, whole genome shotgun sequence	24988..25425	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(K)	99.82	560 / 560	DAQJOJ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042296 SAMN37820848-rid19921253.denovo.51, whole genome shotgun sequence	4259..4818	enterobacteriales	IncFII	99.62	261 / 261	DAQJOJ010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042296 SAMN37820848-rid19921253.denovo.58, whole genome shotgun sequence	3515..3775		enterobacteriales	IncHI2	99.69	327 / 327	DAQJOJ010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042296 SAMN37820848-rid19921253.denovo.07, whole genome shotgun sequence	52870..53196		enterobacteriales	IncHI2A	99.84	630 / 630	DAQJOJ010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042296 SAMN37820848-rid19921253.denovo.07, whole genome shotgun sequence	68062..68691																																		avrA	DAQJOJ010000009.1	60846..61715	99.77	870	0						
GCA_032930655.1_PDT001950471.1_genomic.fna	Salmonella_enterica	0.5227	119.804 KB	13	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	-:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	-	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJOM010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030060 SAMN37820493-rid19919873.denovo.04, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJOM010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00030060 SAMN37820493-rid19919873.guided.37, whole genome shotgun sequence	31477..31914	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJOM010000011.1	39483..40352	99.655	870	0						
GCA_032930665.1_PDT001950469.1_genomic.fna	Salmonella_enterica	0.5217	96.882 KB	14	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJOO010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00021914 SAMN37820224-rid19925303.denovo.021, whole genome shotgun sequence	11341..11778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJOO010000101.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00021914 SAMN37820224-rid19925303.guided.050, whole genome shotgun sequence	14698..15135	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJOO010000003.1	148742..149611	99.77	870	0						
GCA_032930695.1_PDT001950470.1_genomic.fna	Salmonella_enterica	0.5226	90.362 KB	16	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJON010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00021237 SAMN37820197-rid19923633.denovo.002, whole genome shotgun sequence	48288..48725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJON010000107.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00021237 SAMN37820197-rid19923633.guided.061, whole genome shotgun sequence	7577..8014	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJON010000022.1	39593..40459	99.08	870	0						
GCA_032930715.1_PDT001950468.1_genomic.fna	Salmonella_enterica	0.52	348.206 KB	6	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJOQ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00030088 SAMN37820494-rid19921243.denovo.06, whole genome shotgun sequence	265927..266364	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJOQ010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00030088 SAMN37820494-rid19921243.guided.12, whole genome shotgun sequence	44284..44721	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJOQ010000008.1	125249..126131	98.075	883	0						
GCA_032930735.1_PDT001950467.1_genomic.fna	Salmonella_enterica	0.5222	139.741 KB	11	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColpVC	aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQJOR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00030106 SAMN37820495-rid19926713.denovo.01, whole genome shotgun sequence	261219..261656	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQJOR010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00030106 SAMN37820495-rid19926713.guided.34, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	99.48	193 / 193	DAQJOR010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00030106 SAMN37820495-rid19926713.denovo.60, whole genome shotgun sequence	1380..1572																																																																	
GCA_032930755.1_PDT001950465.1_genomic.fna	Salmonella_enterica	0.52	121.615 KB	13	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJOS010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00033776 SAMN37820584-rid19926703.denovo.28, whole genome shotgun sequence	52306..52743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJOS010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00033776 SAMN37820584-rid19926703.guided.40, whole genome shotgun sequence	15690..16127	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJOS010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00033776 SAMN37820584-rid19926703.denovo.60, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJOS010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00033776 SAMN37820584-rid19926703.denovo.61, whole genome shotgun sequence	3345..3457																																																											
GCA_032930775.1_PDT001950466.1_genomic.fna	Salmonella_enterica	0.521	161.428 KB	10	aroC_10,dnaN_71,hemD_43,hisD_12,purE_190,sucA_20,thrA_18	808	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_71	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_190	sucA	100	100	sucA_20	thrA	100	100	thrA_18	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJOP010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00030133 SAMN37820496-rid19919863.denovo.02, whole genome shotgun sequence	145147..145584	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJOP010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00030133 SAMN37820496-rid19919863.guided.22, whole genome shotgun sequence	44300..44737	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(p96A)	99.25	534 / 534	DAQJOP010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00030133 SAMN37820496-rid19919863.denovo.29, whole genome shotgun sequence	16024..16557																																																						avrA	DAQJOP010000015.1	39483..40352	99.54	870	0						
GCA_032930795.1_PDT001950462.1_genomic.fna	Salmonella_enterica	0.5213	286.139 KB	7	aroC_13,dnaN_12,hemD_63,hisD_16,purE_13,sucA_16,thrA_4	437	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_63	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAQJOT010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00033805 SAMN37820587-rid19924263.denovo.02, whole genome shotgun sequence	15412..15849	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAQJOT010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00033805 SAMN37820587-rid19924263.guided.20, whole genome shotgun sequence	15362..15799	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJOT010000007.1	114924..115792	99.425	870	0						
GCA_032930815.1_PDT001950463.1_genomic.fna	Salmonella_enterica	0.5215	197.789 KB	8	aroC_16,dnaN_16,hemD_20,hisD_602,purE_8,sucA_12,thrA_18	2177	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_602	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJOU010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00033802 SAMN37820586-rid19922703.denovo.02, whole genome shotgun sequence	137416..137853	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJOU010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00033802 SAMN37820586-rid19922703.guided.14, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJOU010000006.1	181992..182858	99.08	870	0						
GCA_032930835.1_PDT001950461.1_genomic.fna	Salmonella_enterica	0.5215	118.097 KB	12	aroC_41,dnaN_13,hemD_10,hisD_12,purE_5!,purE_5!,sucA_19,thrA_12	Unknown	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col8282	aroC	100	100	aroC_41	dnaN	100	100	dnaN_13	hemD	100	100	hemD_10	hisD	100	100	hisD_12	purE	100	100	purE_5!	purE	100	100	purE_5!	sucA	100	100	sucA_19	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJOV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00033818 SAMN37820588-rid19919853.denovo.01, whole genome shotgun sequence	11319..11756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJOV010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00033818 SAMN37820588-rid19919853.guided.47, whole genome shotgun sequence	15679..16116	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQJOV010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00033818 SAMN37820588-rid19919853.denovo.69, whole genome shotgun sequence	186..316	enterobacteriales	Col8282	90.1	202 / 207	DAQJOV010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00033818 SAMN37820588-rid19919853.denovo.67, whole genome shotgun sequence	191..392																																																avrA	DAQJOV010000002.1	207717..208586	99.77	870	0						
GCA_032930875.1_PDT001950457.1_genomic.fna	Salmonella_enterica	0.5184	85.533 KB	18	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	-:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	ColRNAI,ColpVC,IncFII(pCRY),IncX1	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	-	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:m,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJOY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00034046 SAMN37820592-rid19925283.denovo.001, whole genome shotgun sequence	149413..149850	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJOY010000132.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00034046 SAMN37820592-rid19925283.guided.042, whole genome shotgun sequence	14065..14502	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	DAQJOY010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00034046 SAMN37820592-rid19925283.denovo.100, whole genome shotgun sequence	2272..2402	enterobacteriales	ColpVC	98.45	193 / 193	DAQJOY010000105.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00034046 SAMN37820592-rid19925283.denovo.108, whole genome shotgun sequence	283..475		enterobacteriales	IncFII(pCRY)	96.45	591 / 593	DAQJOY010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00034046 SAMN37820592-rid19925283.denovo.063, whole genome shotgun sequence	18545..19135		enterobacteriales	IncX1	97.88	377 / 377	DAQJOY010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00034046 SAMN37820592-rid19925283.denovo.043, whole genome shotgun sequence	769..1145																																													
GCA_032930895.1_PDT001950459.1_genomic.fna	Salmonella_enterica	0.5206	191.433 KB	9	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJOZ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00033878 SAMN37820590-rid19925293.denovo.03, whole genome shotgun sequence	148904..149341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJOZ010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00033878 SAMN37820590-rid19925293.guided.23, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJOZ010000007.1	107315..108184	99.195	870	0						
GCA_032930915.1_PDT001950460.1_genomic.fna	Salmonella_enterica	0.5219	176.235 KB	8	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJOW010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00033867 SAMN37820589-rid19923623.denovo.10, whole genome shotgun sequence	12555..12992	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJOW010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00033867 SAMN37820589-rid19923623.guided.29, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJOW010000016.1	94004..94874	99.656	871	0						
GCA_032930935.1_PDT001950456.1_genomic.fna	Salmonella_enterica	0.5221	81.476 KB	18	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJOX010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00034141 SAMN37820593-rid19919843.denovo.025, whole genome shotgun sequence	12494..12931	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJOX010000119.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00034141 SAMN37820593-rid19919843.guided.036, whole genome shotgun sequence	37913..38350	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJOX010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00034141 SAMN37820593-rid19919843.denovo.091, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJOX010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00034141 SAMN37820593-rid19919843.denovo.093, whole genome shotgun sequence	3345..3457																																																											
GCA_032930955.1_PDT001950455.1_genomic.fna	Salmonella_enterica	0.522	100.513 KB	14	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJPA010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00021257 SAMN37820198-rid19926693.denovo.27, whole genome shotgun sequence	12526..12963	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJPA010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00021257 SAMN37820198-rid19926693.guided.50, whole genome shotgun sequence	14145..14582	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJPA010000005.1	125610..126479	99.54	870	0						
GCA_032930975.1_PDT001950454.1_genomic.fna	Salmonella_enterica	0.5208	193.983 KB	9	aroC_22,dnaN_104,hemD_48,hisD_231,purE_114,sucA_107,thrA_4	1069	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_48	hisD	100	100	hisD_231	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAQJPB010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00022148 SAMN37820234-rid19924253.denovo.04, whole genome shotgun sequence	37958..38395	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAQJPB010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00022148 SAMN37820234-rid19924253.guided.43, whole genome shotgun sequence	10911..11348	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJPB010000009.1	140299..141168	99.54	870	0						
GCA_032930995.1_PDT001950452.1_genomic.fna	Salmonella_enterica	0.5215	126.092 KB	11	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJPD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00034186 SAMN37820595-rid19924243.denovo.01, whole genome shotgun sequence	479812..480249	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJPD010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00034186 SAMN37820595-rid19924243.guided.45, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJPD010000009.1	104872..105741	99.195	870	0						
GCA_032931015.1_PDT001950453.1_genomic.fna	Salmonella_enterica	0.5227	116.803 KB	14	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJPC010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00034145 SAMN37820594-rid19922693.denovo.08, whole genome shotgun sequence	145234..145671	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJPC010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00034145 SAMN37820594-rid19922693.guided.45, whole genome shotgun sequence	10115..10552	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJPC010000003.1	107852..108721	99.77	870	0						
GCA_032931035.1_PDT001950451.1_genomic.fna	Salmonella_enterica	0.5218	133.434 KB	12	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJPE010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00034198 SAMN37820596-rid19919833.denovo.09, whole genome shotgun sequence	12549..12986	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJPE010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00034198 SAMN37820596-rid19919833.guided.17, whole genome shotgun sequence	31167..31604	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJPE010000006.1	83491..84361	99.656	871	0						
GCA_032931055.1_PDT001950449.1_genomic.fna	Salmonella_enterica	0.5213	158.917 KB	10	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJPF010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00034304 SAMN37820598-rid19925273.denovo.04, whole genome shotgun sequence	145135..145572	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJPF010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00034304 SAMN37820598-rid19925273.guided.16, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	DAQJPF010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00034304 SAMN37820598-rid19925273.denovo.58, whole genome shotgun sequence	965..1118																																																						avrA	DAQJPF010000006.1	68238..69108	99.656	871	0						
GCA_032931075.1_PDT001950450.1_genomic.fna	Salmonella_enterica	0.5215	93.663 KB	17	aroC_41,dnaN_13,hemD_10,hisD_12,purE_5,sucA_19,thrA_12	3211	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col8282	aroC	100	100	aroC_41	dnaN	100	100	dnaN_13	hemD	100	100	hemD_10	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJPH010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00034271 SAMN37820597-rid19923613.denovo.018, whole genome shotgun sequence	15461..15898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJPH010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00034271 SAMN37820597-rid19923613.guided.038, whole genome shotgun sequence	44304..44741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQJPH010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00034271 SAMN37820597-rid19923613.denovo.085, whole genome shotgun sequence	186..316	enterobacteriales	Col8282	90.1	202 / 207	DAQJPH010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00034271 SAMN37820597-rid19923613.denovo.083, whole genome shotgun sequence	191..392																																																avrA	DAQJPH010000021.1	83302..84171	99.77	870	0						
GCA_032931095.1_PDT001950448.1_genomic.fna	Salmonella_enterica	0.5213	159.31 KB	10	aroC_16,dnaN_16,hemD_20,hisD_602,purE_8,sucA_12,thrA_18	2177	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_602	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJPG010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00034331 SAMN37820599-rid19921223.denovo.02, whole genome shotgun sequence	262348..262785	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJPG010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00034331 SAMN37820599-rid19921223.guided.14, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJPG010000006.1	97979..98845	99.08	870	0						
GCA_032931115.1_PDT001950446.1_genomic.fna	Salmonella_enterica	0.5193	127.189 KB	13	aroC_41,dnaN_13,hemD_10,hisD_12,purE_5,sucA_19,thrA_12	3211	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_13	hemD	100	100	hemD_10	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJPJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00034507 SAMN37820601-rid19919823.denovo.01, whole genome shotgun sequence	11330..11767	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJPJ010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00034507 SAMN37820601-rid19919823.guided.52, whole genome shotgun sequence	15832..16269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJPJ010000005.1	116373..117242	99.77	870	0						
GCA_032931135.1_PDT001950447.1_genomic.fna	Salmonella_enterica	0.5221	118.014 KB	13	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJPI010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00034445 SAMN37820600-rid19925263.denovo.13, whole genome shotgun sequence	12559..12996	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJPI010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00034445 SAMN37820600-rid19925263.guided.39, whole genome shotgun sequence	34137..34574	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJPI010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00034445 SAMN37820600-rid19925263.denovo.67, whole genome shotgun sequence	1189..1298																																																																	
GCA_032931155.1_PDT001950445.1_genomic.fna	Salmonella_enterica	0.5223	321.183 KB	6	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJPK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00034561 SAMN37820602-rid19926683.denovo.01, whole genome shotgun sequence	480402..480839	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJPK010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00034561 SAMN37820602-rid19926683.guided.21, whole genome shotgun sequence	40268..40705	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJPK010000004.1	173054..173924	99.656	871	0						
GCA_032931175.1_PDT001950444.1_genomic.fna	Salmonella_enterica	0.5205	113.92 KB	15	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJPL010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00034781 SAMN37820603-rid19924233.denovo.10, whole genome shotgun sequence	11321..11758	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJPL010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00034781 SAMN37820603-rid19924233.guided.19, whole genome shotgun sequence	24958..25395	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJPL010000011.1	125468..126337	99.54	870	0						
GCA_032931195.1_PDT001950443.1_genomic.fna	Salmonella_enterica	0.5214	178.649 KB	9	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJPM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00022190 SAMN37820235-rid19922683.denovo.01, whole genome shotgun sequence	65189..65626	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJPM010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00022190 SAMN37820235-rid19922683.guided.42, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032931215.1_PDT001950439.1_genomic.fna	Salmonella_enterica	0.5217	133.122 KB	11	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pXuzhou21	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJPQ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00034795 SAMN37820607-rid19925253.denovo.09, whole genome shotgun sequence	62433..62870	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJPQ010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00034795 SAMN37820607-rid19925253.guided.56, whole genome shotgun sequence	7935..8372	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pXuzhou21	99.86	720 / 720	DAQJPQ010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00034795 SAMN37820607-rid19925253.denovo.35, whole genome shotgun sequence	23691..24410																																																						avrA	DAQJPQ010000005.1	83450..84319	99.77	870	0						
GCA_032931235.1_PDT001950441.1_genomic.fna	Salmonella_enterica	0.5211	97.314 KB	16	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	9,46:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9,46	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Waedenswil		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJPO010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00034789 SAMN37820605-rid19919813.denovo.27, whole genome shotgun sequence	52310..52747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJPO010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00034789 SAMN37820605-rid19919813.guided.46, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJPO010000002.1	149831..150700	99.54	870	0						
GCA_032931255.1_PDT001950438.1_genomic.fna	Salmonella_enterica	0.5227	82.788 KB	20	aroC_14,dnaN_210,hemD_8,hisD_14,purE_38,sucA_19,thrA_102	1792	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col156,ColpVC	aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	100	100	hemD_8	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJPS010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00034820 SAMN37820608-rid19921213.denovo.023, whole genome shotgun sequence	15481..15918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJPS010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00034820 SAMN37820608-rid19921213.guided.062, whole genome shotgun sequence	14147..14584	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	DAQJPS010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00034820 SAMN37820608-rid19921213.denovo.093, whole genome shotgun sequence	792..945	enterobacteriales	ColpVC	98.96	193 / 193	DAQJPS010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00034820 SAMN37820608-rid19921213.denovo.098, whole genome shotgun sequence	519..711																																																avrA	DAQJPS010000012.1	98253..99122	99.54	870	0						
GCA_032931265.1_PDT001950442.1_genomic.fna	Salmonella_enterica	0.5217	138.81 KB	12	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJPN010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00034784 SAMN37820604-rid19924223.denovo.11, whole genome shotgun sequence	52293..52730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJPN010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00034784 SAMN37820604-rid19924223.guided.35, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	DAQJPN010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00034784 SAMN37820604-rid19924223.denovo.59, whole genome shotgun sequence	965..1118																																																						avrA	DAQJPN010000005.1	68238..69108	99.656	871	0						
GCA_032931295.1_PDT001950436.1_genomic.fna	Salmonella_enterica	0.5218	119.497 KB	13	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJPT010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00034958 SAMN37820610-rid19919803.denovo.03, whole genome shotgun sequence	89206..89643	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJPT010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00034958 SAMN37820610-rid19919803.guided.18, whole genome shotgun sequence	19574..20011	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJPT010000004.1	125044..125910	99.08	870	0						
GCA_032931305.1_PDT001950437.1_genomic.fna	Salmonella_enterica	0.5213	185.84 KB	9	aroC_6,dnaN_13,hemD_3,hisD_381,purE_2,sucA_19,thrA_338	2756	30:y:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_13	hemD	100	100	hemD_3	hisD	100	100	hisD_381	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_338	30	y	1,2	Salmonella enterica subspecies enterica (subspecies I)	Matopeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJPR010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Matopeni isolate AUSMDU00034922 SAMN37820609-rid19925243.denovo.03, whole genome shotgun sequence	52346..52783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJPR010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Matopeni isolate AUSMDU00034922 SAMN37820609-rid19925243.guided.33, whole genome shotgun sequence	18856..19293	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJPR010000007.1	146735..147604	99.77	870	0						
GCA_032931335.1_PDT001950440.1_genomic.fna	Salmonella_enterica	0.5213	126.323 KB	12	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJPP010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00034794 SAMN37820606-rid19923603.denovo.12, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJPP010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00034794 SAMN37820606-rid19923603.guided.39, whole genome shotgun sequence	1942..2379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJPP010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00034794 SAMN37820606-rid19923603.denovo.65, whole genome shotgun sequence	1380..1572																																																																	
GCA_032931355.1_PDT001950434.1_genomic.fna	Salmonella_enterica	0.5206	180.067 KB	8	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJPV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00034971 SAMN37820612-rid19919793.denovo.01, whole genome shotgun sequence	145172..145609	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJPV010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00034971 SAMN37820612-rid19919793.guided.16, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJPV010000006.1	114849..115718	99.77	870	0						
GCA_032931375.1_PDT001950435.1_genomic.fna	Salmonella_enterica	0.522	159.377 KB	10	aroC_14,dnaN_210,hemD_8*,hisD_14,purE_38,sucA_19,thrA_102	1792*	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	99.7685185185185	100	hemD_8*	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJPU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00034969 SAMN37820611-rid19926673.denovo.01, whole genome shotgun sequence	471685..472122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJPU010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00034969 SAMN37820611-rid19926673.guided.22, whole genome shotgun sequence	42397..42834	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJPU010000005.1	98264..99133	99.54	870	0						
GCA_032931395.1_PDT001950432.1_genomic.fna	Salmonella_enterica	0.5202	132.976 KB	11	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJPX010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00038143 SAMN37820700-rid19924213.denovo.07, whole genome shotgun sequence	117575..118012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJPX010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00038143 SAMN37820700-rid19924213.guided.54, whole genome shotgun sequence	3582..4019	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJPX010000011.1	94851..95720	99.31	870	0						
GCA_032931415.1_PDT001950431.1_genomic.fna	Salmonella_enterica	0.5188	119.915 KB	13	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJPZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00038144 SAMN37820701-rid19921203.denovo.01, whole genome shotgun sequence	117586..118023	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJPZ010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00038144 SAMN37820701-rid19921203.guided.62, whole genome shotgun sequence	3859..4296	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJPZ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00038144 SAMN37820701-rid19921203.denovo.06, whole genome shotgun sequence	59062..59388	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJPZ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00038144 SAMN37820701-rid19921203.denovo.06, whole genome shotgun sequence	74254..74883																																																avrA	DAQJPZ010000005.1	108066..108935	99.77	870	0						
GCA_032931435.1_PDT001950433.1_genomic.fna	Salmonella_enterica	0.5211	234.364 KB	8	aroC_168,dnaN_14,hemD_15,hisD_559,purE_5,sucA_90,thrA_12	2033	-:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_168	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_559	purE	100	100	purE_5	sucA	100	100	sucA_90	thrA	100	100	thrA_12	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJPW010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00038100 SAMN37820699-rid19922673.denovo.05, whole genome shotgun sequence	37890..38327	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJPW010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00038100 SAMN37820699-rid19922673.guided.22, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	DAQJPW010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00038100 SAMN37820699-rid19922673.denovo.09, whole genome shotgun sequence	147256..147678	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQJPW010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00038100 SAMN37820699-rid19922673.guided.34, whole genome shotgun sequence	25019..25441	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJPW010000001.1	140304..141173	99.655	870	0						
GCA_032931455.1_PDT001950429.1_genomic.fna	Salmonella_enterica	0.5208	160.814 KB	11	aroC_168,dnaN_14,hemD_15,hisD_559,purE_5,sucA_90,thrA_12	2033	-:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_168	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_559	purE	100	100	purE_5	sucA	100	100	sucA_90	thrA	100	100	thrA_12	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJPY010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00038163 SAMN37820703-rid19921193.denovo.07, whole genome shotgun sequence	37890..38327	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJPY010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00038163 SAMN37820703-rid19921193.guided.34, whole genome shotgun sequence	13811..14248	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	DAQJPY010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00038163 SAMN37820703-rid19921193.denovo.09, whole genome shotgun sequence	147256..147678	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQJPY010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00038163 SAMN37820703-rid19921193.guided.37, whole genome shotgun sequence	29177..29599	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJPY010000001.1	140304..141173	99.655	870	0						
GCA_032931475.1_PDT001950428.1_genomic.fna	Salmonella_enterica	0.5215	219.519 KB	8	aroC_10,dnaN_61,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	157	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_61	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJQA010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00022416 SAMN37820245-rid19922663.denovo.07, whole genome shotgun sequence	89220..89657	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJQA010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00022416 SAMN37820245-rid19922663.guided.45, whole genome shotgun sequence	2611..3048	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJQA010000010.1	114826..115695	99.54	870	0						
GCA_032931495.1_PDT001950427.1_genomic.fna	Salmonella_enterica	0.5217	206.935 KB	8	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJQB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00038257 SAMN37820704-rid19925233.denovo.01, whole genome shotgun sequence	371694..372131	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJQB010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00038257 SAMN37820704-rid19925233.guided.30, whole genome shotgun sequence	15190..15627	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJQB010000008.1	126654..127523	99.54	870	0						
GCA_032931515.1_PDT001950426.1_genomic.fna	Salmonella_enterica	0.521	159.585 KB	11	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pXuzhou21	aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJQC010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00038339 SAMN37820705-rid19919783.denovo.22, whole genome shotgun sequence	52244..52681	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJQC010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00038339 SAMN37820705-rid19919783.guided.39, whole genome shotgun sequence	9237..9674	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pXuzhou21	99.31	720 / 720	DAQJQC010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00038339 SAMN37820705-rid19919783.denovo.35, whole genome shotgun sequence	20450..21169																																																						avrA	DAQJQC010000010.1	102166..103035	99.54	870	0						
GCA_032931535.1_PDT001950425.1_genomic.fna	Salmonella_enterica	0.5222	198.993 KB	7	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJQD010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00038375 SAMN37820706-rid19926653.denovo.05, whole genome shotgun sequence	145334..145771	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJQD010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00038375 SAMN37820706-rid19926653.guided.22, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJQD010000007.1	108050..108919	99.77	870	0						
GCA_032931555.1_PDT001950424.1_genomic.fna	Salmonella_enterica	0.5202	120.104 KB	11	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJQE010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00038378 SAMN37820707-rid19919773.denovo.018, whole genome shotgun sequence	63560..63997	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJQE010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00038378 SAMN37820707-rid19919773.guided.038, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJQE010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00038378 SAMN37820707-rid19919773.denovo.065, whole genome shotgun sequence	547..675																																																						avrA	DAQJQE010000021.1	37919..38788	98.966	870	0						
GCA_032931575.1_PDT001950422.1_genomic.fna	Salmonella_enterica	0.5204	326.861 KB	6	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pXuzhou21	aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJQF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00038409 SAMN37820709-rid19925223.denovo.01, whole genome shotgun sequence	388319..388756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJQF010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00038409 SAMN37820709-rid19925223.guided.15, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pXuzhou21	99.31	720 / 720	DAQJQF010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00038409 SAMN37820709-rid19925223.denovo.23, whole genome shotgun sequence	20450..21169																																																						avrA	DAQJQF010000004.1	102471..103340	99.54	870	0						
GCA_032931595.1_PDT001950421.1_genomic.fna	Salmonella_enterica	0.5209	276.079 KB	5	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX4	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJQH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00038417 SAMN37820710-rid19921183.denovo.01, whole genome shotgun sequence	384071..384508	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJQH010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00038417 SAMN37820710-rid19921183.guided.16, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX4	98.88	712 / 712	DAQJQH010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00038417 SAMN37820710-rid19921183.denovo.22, whole genome shotgun sequence	2512..3223																																																						avrA	DAQJQH010000007.1	39483..40352	99.655	870	0						
GCA_032931625.1_PDT001950420.1_genomic.fna	Salmonella_enterica	0.5214	234.665 KB	6	aroC_16,dnaN_487,hemD_20,hisD_18,purE_8,sucA_447,thrA_18	2299	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_487	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_447	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJQG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00038440 SAMN37820711-rid19926643.denovo.01, whole genome shotgun sequence	136696..137133	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJQG010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00038440 SAMN37820711-rid19926643.guided.14, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJQG010000004.1	162802..163668	98.966	870	0						
GCA_032931655.1_PDT001950419.1_genomic.fna	Salmonella_enterica	0.5217	305.34 KB	6	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJQI010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00038441 SAMN37820712-rid19921173.denovo.02, whole genome shotgun sequence	383423..383860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJQI010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00038441 SAMN37820712-rid19921173.guided.20, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJQI010000006.1	129260..130130	99.656	871	0						
GCA_032931665.1_PDT001950418.1_genomic.fna	Salmonella_enterica	0.5214	462.035 KB	5	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	1	Col156	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJQJ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00038448 SAMN37820713-rid19921163.denovo.02, whole genome shotgun sequence	571885..572322	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJQJ010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00038448 SAMN37820713-rid19921163.guided.19, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	Col156	98.03	152 / 154	DAQJQJ010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00038448 SAMN37820713-rid19921163.denovo.28, whole genome shotgun sequence	3377..3528																																																						avrA	DAQJQJ010000009.1	39539..40408	99.31	870	0						
GCA_032931695.1_PDT001950417.1_genomic.fna	Salmonella_enterica	0.5221	260.238 KB	7	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA7,aac(3)-Id,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA7,aac(3)-Id,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	1	ColpVC	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJQK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.denovo.01, whole genome shotgun sequence	378517..378954	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQJQK010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.denovo.32, whole genome shotgun sequence	15113..15949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQJQK010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.denovo.32, whole genome shotgun sequence	15949..16752	Streptomycin	AF321551	aadA7	100	798/798	DAQJQK010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.denovo.32, whole genome shotgun sequence	1127..1924	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJQK010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.denovo.32, whole genome shotgun sequence	575..1051	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	DAQJQK010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.guided.25, whole genome shotgun sequence	15388..15825	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQJQK010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.guided.33, whole genome shotgun sequence	7131..7967	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQJQK010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.guided.33, whole genome shotgun sequence	7967..8770	Streptomycin	AF321551	aadA7	100	798/798	DAQJQK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.guided.35, whole genome shotgun sequence	1168..1965	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJQK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.guided.35, whole genome shotgun sequence	616..1092	Gentamicin, Astromicin, Fortimicin	AB114632	blaTEM-1B	100	861/861	DAQJQK010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.denovo.41, whole genome shotgun sequence	408..1268	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJQK010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.guided.40, whole genome shotgun sequence	965..1825	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	DAQJQK010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.denovo.32, whole genome shotgun sequence	2429..3268	Sulfamethoxazole	U12338	sul1	100	840/840	DAQJQK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.guided.35, whole genome shotgun sequence	2470..3309	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQJQK010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.denovo.32, whole genome shotgun sequence	10174..11373	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQJQK010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.guided.33, whole genome shotgun sequence	2192..3391	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	ColpVC	96.89	193 / 193	DAQJQK010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022433 SAMN37820246-rid19925213.denovo.42, whole genome shotgun sequence	996..1188																																																						avrA	DAQJQK010000003.1	118647..119516	99.31	870	0						
GCA_032931715.1_PDT001950416.1_genomic.fna	Salmonella_enterica	0.5218	376.976 KB	5	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJQL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00038456 SAMN37820714-rid19919763.denovo.01, whole genome shotgun sequence	174706..175143	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJQL010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00038456 SAMN37820714-rid19919763.guided.16, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJQL010000009.1	39483..40352	99.77	870	0						
GCA_032931735.1_PDT001950415.1_genomic.fna	Salmonella_enterica	0.5211	157.052 KB	11	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJQM010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00038458 SAMN37820715-rid19926633.denovo.14, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJQM010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00038458 SAMN37820715-rid19926633.guided.29, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJQM010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00038458 SAMN37820715-rid19926633.denovo.50, whole genome shotgun sequence	1380..1572																																																																	
GCA_032931755.1_PDT001950414.1_genomic.fna	Salmonella_enterica	0.5217	180.014 KB	9	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJQN010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00038474 SAMN37820716-rid19919753.denovo.11, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJQN010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00038474 SAMN37820716-rid19919753.guided.26, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJQN010000004.1	83489..84359	99.656	871	0						
GCA_032931795.1_PDT001950412.1_genomic.fna	Salmonella_enterica	0.5215	227.076 KB	8	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	DAQJQP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00038505 SAMN37820718-rid19925203.denovo.01, whole genome shotgun sequence	255486..255923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	DAQJQP010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00038505 SAMN37820718-rid19925203.guided.24, whole genome shotgun sequence	30842..31279	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.38	643 / 643	DAQJQP010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00038505 SAMN37820718-rid19925203.denovo.36, whole genome shotgun sequence	15146..15788	enterobacteriales	IncFII(Yp)	91.3	230 / 230	DAQJQP010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00038505 SAMN37820718-rid19925203.denovo.23, whole genome shotgun sequence	43249..43475																																																avrA	DAQJQP010000005.1	106017..106885	99.425	870	0						
GCA_032931815.1_PDT001950411.1_genomic.fna	Salmonella_enterica	0.5214	152.871 KB	11	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJQR010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00038538 SAMN37820719-rid19921153.denovo.14, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJQR010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00038538 SAMN37820719-rid19921153.guided.31, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJQR010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00038538 SAMN37820719-rid19921153.denovo.55, whole genome shotgun sequence	1380..1572																																																																	
GCA_032931835.1_PDT001950409.1_genomic.fna	Salmonella_enterica	0.5213	231.719 KB	7	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJQQ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00038615 SAMN37820721-rid19921143.denovo.06, whole genome shotgun sequence	91026..91463	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJQQ010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00038615 SAMN37820721-rid19921143.guided.14, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJQQ010000010.1	94004..94874	99.656	871	0						
GCA_032931855.1_PDT001950410.1_genomic.fna	Salmonella_enterica	0.521	309.597 KB	6	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJQS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00038606 SAMN37820720-rid19926623.denovo.01, whole genome shotgun sequence	371730..372167	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJQS010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00038606 SAMN37820720-rid19926623.guided.13, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJQS010000009.1	152076..152945	99.54	870	0						
GCA_032931875.1_PDT001950407.1_genomic.fna	Salmonella_enterica	0.521	167.167 KB	10	aroC_59,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	1602	-:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_59	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJQU010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00038642 SAMN37820723-rid19926613.denovo.09, whole genome shotgun sequence	12557..12994	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJQU010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00038642 SAMN37820723-rid19926613.guided.37, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJQU010000003.1	101148..102017	99.195	870	0						
GCA_032931895.1_PDT001950408.1_genomic.fna	Salmonella_enterica	0.5213	114.449 KB	13	aroC_680,dnaN_198,hemD_550,hisD_119,purE_219,sucA_119,thrA_118	3498	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_680	dnaN	100	100	dnaN_198	hemD	100	100	hemD_550	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.99	399/438	DAQJQT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00038631 SAMN37820722-rid19922633.denovo.001, whole genome shotgun sequence	101924..102322	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.99	399/438	DAQJQT010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00038631 SAMN37820722-rid19922633.guided.049, whole genome shotgun sequence	14148..14546	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pN55391)	98.75	560 / 560	DAQJQT010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00038631 SAMN37820722-rid19922633.denovo.037, whole genome shotgun sequence	16618..17177																																																																	
GCA_032931915.1_PDT001950406.1_genomic.fna	Salmonella_enterica	0.5212	243.56 KB	7	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJQV010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00022434 SAMN37820247-rid19919743.denovo.02, whole genome shotgun sequence	173619..174056	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJQV010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00022434 SAMN37820247-rid19919743.guided.40, whole genome shotgun sequence	10165..10602	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	DAQJQV010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00022434 SAMN37820247-rid19919743.denovo.37, whole genome shotgun sequence	2003..2645																																																						avrA	DAQJQV010000008.1	125416..126285	99.425	870	0						
GCA_032931935.1_PDT001950405.1_genomic.fna	Salmonella_enterica	0.5226	142.807 KB	12	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncL	aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJQW010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00038663 SAMN37820724-rid19927523.denovo.28, whole genome shotgun sequence	11329..11766	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJQW010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00038663 SAMN37820724-rid19927523.guided.43, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncL	96.69	664 / 661	DAQJQW010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00038663 SAMN37820724-rid19927523.denovo.29, whole genome shotgun sequence	37098..37760																																																						avrA	DAQJQW010000008.1	95271..96140	99.425	870	0						
GCA_032931955.1_PDT001950404.1_genomic.fna	Salmonella_enterica	0.5197	125.086 KB	14	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJQX010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00038664 SAMN37820725-rid19919733.denovo.26, whole genome shotgun sequence	63560..63997	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJQX010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00038664 SAMN37820725-rid19919733.guided.25, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJQX010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00038664 SAMN37820725-rid19919733.denovo.69, whole genome shotgun sequence	547..675																																																						avrA	DAQJQX010000004.1	116901..117770	98.966	870	0						
GCA_032931975.1_PDT001950402.1_genomic.fna	Salmonella_enterica	0.5227	194.866 KB	8	aroC_2,dnaN_2,hemD_1071,hisD_7,purE_134,sucA_19,thrA_86	8556	7:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_1071	hisD	100	100	hisD_7	purE	100	100	purE_134	sucA	100	100	sucA_19	thrA	100	100	thrA_86	7	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Potsdam		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJQZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00038789 SAMN37820727-rid19925193.denovo.01, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQJQZ010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00038789 SAMN37820727-rid19925193.guided.32, whole genome shotgun sequence	26717..27154	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJQZ010000003.1	147060..147929	99.655	870	0						
GCA_032932015.1_PDT001950398.1_genomic.fna	Salmonella_enterica	0.5185	178.212 KB	10	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJRD010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040720 SAMN37820789-rid19922603.denovo.02, whole genome shotgun sequence	134048..134485	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJRD010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040720 SAMN37820789-rid19922603.guided.31, whole genome shotgun sequence	14559..14996	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJRD010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040720 SAMN37820789-rid19922603.denovo.06, whole genome shotgun sequence	101565..101891	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJRD010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040720 SAMN37820789-rid19922603.denovo.06, whole genome shotgun sequence	116757..117386																																																avrA	DAQJRD010000013.1	107975..108844	99.77	870	0						
GCA_032932035.1_PDT001950400.1_genomic.fna	Salmonella_enterica	0.5195	130.092 KB	13	aroC_301,dnaN_272,hemD_48,hisD_16,purE_40,sucA_13,thrA_3	864	-:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_301	dnaN	100	100	dnaN_272	hemD	100	100	hemD_48	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_3	-	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:m,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJRA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00040694 SAMN37820787-rid19926603.denovo.01, whole genome shotgun sequence	169650..170087	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJRA010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00040694 SAMN37820787-rid19926603.guided.77, whole genome shotgun sequence	1942..2379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032932055.1_PDT001950397.1_genomic.fna	Salmonella_enterica	0.5223	118.454 KB	11	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJRC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00040727 SAMN37820790-rid19925183.denovo.001, whole genome shotgun sequence	358954..359391	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJRC010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00040727 SAMN37820790-rid19925183.guided.058, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032932075.1_PDT001950396.1_genomic.fna	Salmonella_enterica	0.5218	120.05 KB	14	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJRE010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040728 SAMN37820791-rid19922593.denovo.08, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJRE010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040728 SAMN37820791-rid19922593.guided.67, whole genome shotgun sequence	1942..2379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJRE010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040728 SAMN37820791-rid19922593.denovo.76, whole genome shotgun sequence	1380..1572																																																																	
GCA_032932095.1_PDT001950399.1_genomic.fna	Salmonella_enterica	0.5213	122.786 KB	14	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJRB010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040718 SAMN37820788-rid19921133.denovo.11, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJRB010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040718 SAMN37820788-rid19921133.guided.32, whole genome shotgun sequence	41872..42309	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJRB010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040718 SAMN37820788-rid19921133.denovo.72, whole genome shotgun sequence	1380..1572																																																																	
GCA_032932115.1_PDT001950395.1_genomic.fna	Salmonella_enterica	0.5212	174.332 KB	10	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJRF010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040736 SAMN37820792-rid19927513.denovo.22, whole genome shotgun sequence	52425..52862	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJRF010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040736 SAMN37820792-rid19927513.guided.33, whole genome shotgun sequence	22450..22887	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJRF010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040736 SAMN37820792-rid19927513.denovo.43, whole genome shotgun sequence	1380..1572																																																																	
GCA_032932135.1_PDT001950394.1_genomic.fna	Salmonella_enterica	0.5221	170.121 KB	11	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJRH010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00040783 SAMN37820793-rid19919723.denovo.06, whole genome shotgun sequence	136729..137166	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJRH010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00040783 SAMN37820793-rid19919723.guided.43, whole genome shotgun sequence	2895..3332	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJRH010000015.1	125054..125920	99.08	870	0						
GCA_032932155.1_PDT001950393.1_genomic.fna	Salmonella_enterica	0.5201	163.569 KB	10	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJRG010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00021374 SAMN37820200-rid19921123.denovo.12, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJRG010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00021374 SAMN37820200-rid19921123.guided.31, whole genome shotgun sequence	15355..15792	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJRG010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00021374 SAMN37820200-rid19921123.denovo.53, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJRG010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00021374 SAMN37820200-rid19921123.denovo.54, whole genome shotgun sequence	3345..3457																																																											
GCA_032932175.1_PDT001950392.1_genomic.fna	Salmonella_enterica	0.5212	234.153 KB	9	aroC_41,dnaN_13,hemD_10,hisD_12,purE_5!,purE_5!,sucA_19,thrA_12	Unknown	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_13	hemD	100	100	hemD_10	hisD	100	100	hisD_12	purE	100	100	purE_5!	purE	100	100	purE_5!	sucA	100	100	sucA_19	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJRI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00022606 SAMN37820254-rid19925173.denovo.01, whole genome shotgun sequence	223672..224109	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJRI010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00022606 SAMN37820254-rid19925173.guided.22, whole genome shotgun sequence	24985..25422	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJRI010000008.1	141758..142627	99.77	870	0						
GCA_032932195.1_PDT001950390.1_genomic.fna	Salmonella_enterica	0.5199	142.844 KB	10	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJRK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00040809 SAMN37820795-rid19926593.denovo.01, whole genome shotgun sequence	471710..472147	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQJRK010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00040809 SAMN37820795-rid19926593.guided.32, whole genome shotgun sequence	30544..30981	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJRK010000006.1	114561..115430	99.425	870	0						
GCA_032932215.1_PDT001950391.1_genomic.fna	Salmonella_enterica	0.5187	134.223 KB	12	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJRJ010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040808 SAMN37820794-rid19921113.denovo.05, whole genome shotgun sequence	52524..52961	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJRJ010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040808 SAMN37820794-rid19921113.guided.52, whole genome shotgun sequence	10146..10583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJRJ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040808 SAMN37820794-rid19921113.denovo.14, whole genome shotgun sequence	89247..89573	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJRJ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040808 SAMN37820794-rid19921113.denovo.14, whole genome shotgun sequence	104439..105068																																																avrA	DAQJRJ010000013.1	39483..40352	99.77	870	0						
GCA_032932235.1_PDT001950389.1_genomic.fna	Salmonella_enterica	0.5214	85.165 KB	17	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	3	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,blaTEM-1B,blaTEM-1B,blaTEM-1B	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	1	ColRNAI	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJRL010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040828 SAMN37820796-rid19919713.denovo.012, whole genome shotgun sequence	84731..85168	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.88	816/816	DAQJRL010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040828 SAMN37820796-rid19919713.denovo.076, whole genome shotgun sequence	6012..6827	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	EU855787	aac(6')-Iaa	98.63	438/438	DAQJRL010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040828 SAMN37820796-rid19919713.guided.048, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.88	816/816	DAQJRL010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040828 SAMN37820796-rid19919713.guided.078, whole genome shotgun sequence	3250..4065	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	EU855787	blaTEM-1B	100	861/861	DAQJRL010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040828 SAMN37820796-rid19919713.denovo.091, whole genome shotgun sequence	406..1266	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	99.88	861/861	DAQJRL010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040828 SAMN37820796-rid19919713.guided.092, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJRL010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040828 SAMN37820796-rid19919713.guided.093, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																							gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	ColRNAI	90.08	131 / 130	DAQJRL010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040828 SAMN37820796-rid19919713.denovo.083, whole genome shotgun sequence	3981..4111																																																						avrA	DAQJRL010000023.1	39529..40398	99.31	870	0						
GCA_032932255.1_PDT001950388.1_genomic.fna	Salmonella_enterica	0.5231	108.858 KB	15	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncL	aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJRM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00040836 SAMN37820797-rid19922583.denovo.01, whole genome shotgun sequence	83283..83720	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJRM010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00040836 SAMN37820797-rid19922583.guided.56, whole genome shotgun sequence	7577..8014	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncL	96.69	664 / 661	DAQJRM010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00040836 SAMN37820797-rid19922583.denovo.27, whole genome shotgun sequence	37098..37760																																																						avrA	DAQJRM010000003.1	95271..96140	99.425	870	0						
GCA_032932275.1_PDT001950386.1_genomic.fna	Salmonella_enterica	0.5224	94.098 KB	16	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJRP010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00040901 SAMN37820799-rid19922573.denovo.005, whole genome shotgun sequence	52271..52708	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJRP010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00040901 SAMN37820799-rid19922573.guided.029, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	94.66	131 / 131	DAQJRP010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00040901 SAMN37820799-rid19922573.denovo.084, whole genome shotgun sequence	180..310																																																						avrA	DAQJRP010000006.1	60952..61822	99.656	871	0						
GCA_032932295.1_PDT001950387.1_genomic.fna	Salmonella_enterica	0.5225	96.517 KB	15	aroC_22,dnaN_104,hemD_25,hisD_113,purE_12,sucA_83,thrA_4	308	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII	aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_25	hisD	100	100	hisD_113	purE	100	100	purE_12	sucA	100	100	sucA_83	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAQJRN010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00040899 SAMN37820798-rid19924203.denovo.03, whole genome shotgun sequence	11341..11778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAQJRN010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00040899 SAMN37820798-rid19924203.guided.26, whole genome shotgun sequence	42399..42836	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII	94.27	262 / 261	DAQJRN010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00040899 SAMN37820798-rid19924203.denovo.13, whole genome shotgun sequence	35975..36235																																																						avrA	DAQJRN010000005.1	98429..99298	99.655	870	0						
GCA_032932315.1_PDT001950384.1_genomic.fna	Salmonella_enterica	0.521	92.775 KB	15	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,tet(M),tet(A),tet(M),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJRR010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00040905 SAMN37820801-rid19919703.denovo.005, whole genome shotgun sequence	136547..136984	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJRR010000112.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00040905 SAMN37820801-rid19919703.guided.050, whole genome shotgun sequence	981..1418	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQJRR010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00040905 SAMN37820801-rid19919703.denovo.066, whole genome shotgun sequence	7969..8829	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJRR010000115.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00040905 SAMN37820801-rid19919703.guided.075, whole genome shotgun sequence	4189..5049	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(M)	99.9	1920/1920	DAQJRR010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00040905 SAMN37820801-rid19919703.denovo.066, whole genome shotgun sequence	3954..5873	Doxycycline, Tetracycline, Minocycline	X75073	tet(A)	99.92	1200/1200	DAQJRR010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00040905 SAMN37820801-rid19919703.denovo.080, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(M)	99.9	1920/1920	DAQJRR010000115.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00040905 SAMN37820801-rid19919703.guided.075, whole genome shotgun sequence	174..2093	Doxycycline, Tetracycline, Minocycline	X75073	tet(A)	99.92	1200/1200	DAQJRR010000116.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00040905 SAMN37820801-rid19919703.guided.079, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJRR010000003.1	109604..110470	99.08	870	0						
GCA_032932355.1_PDT001950383.1_genomic.fna	Salmonella_enterica	0.521	108.012 KB	14	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJRQ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00040948 SAMN37820802-rid19921103.denovo.06, whole genome shotgun sequence	52286..52723	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJRQ010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00040948 SAMN37820802-rid19921103.guided.44, whole genome shotgun sequence	10269..10706	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJRQ010000007.1	81854..82723	99.54	870	0						
GCA_032932375.1_PDT001950382.1_genomic.fna	Salmonella_enterica	0.522	170.797 KB	9	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJRT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00040984 SAMN37820803-rid19925163.denovo.01, whole genome shotgun sequence	479284..479721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJRT010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00040984 SAMN37820803-rid19925163.guided.36, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQJRT010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00040984 SAMN37820803-rid19925163.denovo.54, whole genome shotgun sequence	4500..5360	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJRT010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00040984 SAMN37820803-rid19925163.guided.56, whole genome shotgun sequence	605..1465	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQJRT010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00040984 SAMN37820803-rid19925163.denovo.59, whole genome shotgun sequence	1479..1609																																																						avrA	DAQJRT010000008.1	99168..100037	98.966	870	0						
GCA_032932395.1_PDT001950381.1_genomic.fna	Salmonella_enterica	0.5198	729.745 KB	2	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJRS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00022630 SAMN37820255-rid19921093.denovo.01, whole genome shotgun sequence	625820..626257	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJRS010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00022630 SAMN37820255-rid19921093.guided.09, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJRS010000003.1	160459..161328	99.54	870	0						
GCA_032932415.1_PDT001950375.1_genomic.fna	Salmonella_enterica	0.5197	248.423 KB	6	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJRV010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00041095 SAMN37820809-rid19923583.denovo.02, whole genome shotgun sequence	377119..377556	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJRV010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00041095 SAMN37820809-rid19923583.guided.11, whole genome shotgun sequence	44297..44734	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJRV010000001.1	754082..754950	99.31	870	0						
GCA_032932435.1_PDT001950374.1_genomic.fna	Salmonella_enterica	0.5205	153.192 KB	11	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	-:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	-	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJRX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00041155 SAMN37820810-rid19919683.denovo.01, whole genome shotgun sequence	72228..72665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJRX010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00041155 SAMN37820810-rid19919683.guided.39, whole genome shotgun sequence	16429..16866	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQJRX010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00041155 SAMN37820810-rid19919683.denovo.08, whole genome shotgun sequence	150171..150594	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQJRX010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00041155 SAMN37820810-rid19919683.guided.43, whole genome shotgun sequence	17839..18262	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJRX010000006.1	150547..151416	99.31	870	0						
GCA_032932455.1_PDT001950376.1_genomic.fna	Salmonella_enterica	0.5181	276.036 KB	6	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJRU010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00041092 SAMN37820808-rid19922553.denovo.02, whole genome shotgun sequence	145245..145682	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJRU010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00041092 SAMN37820808-rid19922553.guided.15, whole genome shotgun sequence	15483..15920	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJRU010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00041092 SAMN37820808-rid19922553.denovo.09, whole genome shotgun sequence	89265..89591	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJRU010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00041092 SAMN37820808-rid19922553.denovo.09, whole genome shotgun sequence	104457..105086																																																avrA	DAQJRU010000004.1	175061..175930	99.77	870	0						
GCA_032932475.1_PDT001950372.1_genomic.fna	Salmonella_enterica	0.5209	113.944 KB	13	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	9,46:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	9,46	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Gateshead		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJRY010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00041428 SAMN37820812-rid19925153.denovo.23, whole genome shotgun sequence	52338..52775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJRY010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00041428 SAMN37820812-rid19925153.guided.53, whole genome shotgun sequence	4686..5123	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJRY010000004.1	145217..146086	98.966	870	0						
GCA_032932495.1_PDT001950373.1_genomic.fna	Salmonella_enterica	0.5216	143.312 KB	10	aroC_117,dnaN_14,hemD_23,hisD_127,purE_6,sucA_7,thrA_22	462	-:k:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_117	dnaN	100	100	dnaN_14	hemD	100	100	hemD_23	hisD	100	100	hisD_127	purE	100	100	purE_6	sucA	100	100	sucA_7	thrA	100	100	thrA_22	-	k	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJRW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00041377 SAMN37820811-rid19923573.denovo.01, whole genome shotgun sequence	387300..387737	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJRW010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00041377 SAMN37820811-rid19923573.guided.12, whole genome shotgun sequence	16459..16896	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJRW010000009.1	146935..147804	99.77	870	0						
GCA_032932515.1_PDT001950369.1_genomic.fna	Salmonella_enterica	0.5216	100.813 KB	15	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJSC010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00044160 SAMN37820901-rid19919673.denovo.28, whole genome shotgun sequence	11315..11752	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJSC010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00044160 SAMN37820901-rid19919673.guided.40, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJSC010000017.1	93997..94866	99.77	870	0						
GCA_032932535.1_PDT001950371.1_genomic.fna	Salmonella_enterica	0.5212	68.508 KB	22	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJRZ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Litchfield isolate AUSMDU00041430 SAMN37820813-rid19921083.denovo.006, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJRZ010000118.1 TPA_asm: Salmonella enterica subsp. enterica serovar Litchfield isolate AUSMDU00041430 SAMN37820813-rid19921083.guided.079, whole genome shotgun sequence	14027..14464	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJRZ010000008.1	102367..103236	99.77	870	0						
GCA_032932575.1_PDT001950370.1_genomic.fna	Salmonella_enterica	0.5223	241.367 KB	8	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJSB010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00022640 SAMN37820256-rid19926573.denovo.08, whole genome shotgun sequence	83165..83602	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJSB010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00022640 SAMN37820256-rid19926573.guided.32, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																						avrA	DAQJSB010000003.1	95271..96140	99.425	870	0						
GCA_032932595.1_PDT001950368.1_genomic.fna	Salmonella_enterica	0.5216	128.117 KB	11	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJSA010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00044164 SAMN37820902-rid19926563.denovo.15, whole genome shotgun sequence	15415..15852	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJSA010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00044164 SAMN37820902-rid19926563.guided.38, whole genome shotgun sequence	15438..15875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJSA010000001.1	140191..141060	99.54	870	0						
GCA_032932615.1_PDT001950365.1_genomic.fna	Salmonella_enterica	0.5225	80.13 KB	19	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJSE010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00044203 SAMN37820904-rid19923563.denovo.005, whole genome shotgun sequence	65146..65583	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJSE010000117.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00044203 SAMN37820904-rid19923563.guided.056, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJSE010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00044203 SAMN37820904-rid19923563.denovo.090, whole genome shotgun sequence	1604..1734																																																																	
GCA_032932635.1_PDT001950366.1_genomic.fna	Salmonella_enterica	0.5204	170.752 KB	10	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJSD010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00022929 SAMN37820265-rid19922543.denovo.09, whole genome shotgun sequence	12492..12929	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJSD010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00022929 SAMN37820265-rid19922543.guided.37, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJSD010000006.1	173998..174867	98.966	870	0						
GCA_032932655.1_PDT001950364.1_genomic.fna	Salmonella_enterica	0.5232	87.227 KB	19	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	-:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	-	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:l,v:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJSF010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar London isolate AUSMDU00044217 SAMN37820905-rid19921073.denovo.028, whole genome shotgun sequence	15501..15938	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQJSF010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar London isolate AUSMDU00044217 SAMN37820905-rid19921073.guided.012, whole genome shotgun sequence	36695..37132	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJSF010000022.1	36960..37829	99.425	870	0						
GCA_032932675.1_PDT001950363.1_genomic.fna	Salmonella_enterica	0.522	84.36 KB	19	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJSG010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00044223 SAMN37820906-rid19923553.denovo.010, whole genome shotgun sequence	51573..52010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJSG010000112.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00044223 SAMN37820906-rid19923553.guided.043, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032932695.1_PDT001950361.1_genomic.fna	Salmonella_enterica	0.5217	84.254 KB	21	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJSI010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00044227 SAMN37820908-rid19921063.denovo.002, whole genome shotgun sequence	47541..47978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJSI010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00044227 SAMN37820908-rid19921063.guided.025, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032932715.1_PDT001950362.1_genomic.fna	Salmonella_enterica	0.5194	71.126 KB	22	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	-:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	-	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJSH010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044224 SAMN37820907-rid19925143.denovo.005, whole genome shotgun sequence	15508..15945	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJSH010000130.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044224 SAMN37820907-rid19925143.guided.056, whole genome shotgun sequence	15469..15906	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJSH010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044224 SAMN37820907-rid19925143.denovo.021, whole genome shotgun sequence	59178..59504	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJSH010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044224 SAMN37820907-rid19925143.denovo.077, whole genome shotgun sequence	2806..3435																																																avrA	DAQJSH010000014.1	43523..44392	99.77	870	0						
GCA_032932725.1_PDT001950359.1_genomic.fna	Salmonella_enterica	0.5193	71.084 KB	24	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI(Gamma),IncI2(Delta)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJSK010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044242 SAMN37820910-rid19919663.denovo.068, whole genome shotgun sequence	12512..12949	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQJSK010000136.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044242 SAMN37820910-rid19919663.guided.063, whole genome shotgun sequence	14172..14609	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI(Gamma)	100	137 / 141	DAQJSK010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044242 SAMN37820910-rid19919663.denovo.055, whole genome shotgun sequence	18533..18669	enterobacteriales	IncI2(Delta)	97.78	316 / 316	DAQJSK010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044242 SAMN37820910-rid19919663.denovo.035, whole genome shotgun sequence	29318..29633																																																avrA	DAQJSK010000018.1	43557..44426	99.425	870	0						
GCA_032932755.1_PDT001950357.1_genomic.fna	Salmonella_enterica	0.5184	123.093 KB	13	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJSJ010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044294 SAMN37820912-rid19924173.denovo.12, whole genome shotgun sequence	15451..15888	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJSJ010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044294 SAMN37820912-rid19924173.guided.47, whole genome shotgun sequence	9833..10270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJSJ010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044294 SAMN37820912-rid19924173.denovo.05, whole genome shotgun sequence	89246..89572	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJSJ010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044294 SAMN37820912-rid19924173.denovo.05, whole genome shotgun sequence	104438..105067																																																avrA	DAQJSJ010000011.1	39573..40442	99.77	870	0						
GCA_032932775.1_PDT001950355.1_genomic.fna	Salmonella_enterica	0.5216	129.876 KB	12	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJSM010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00023003 SAMN37820266-rid19923543.denovo.26, whole genome shotgun sequence	52304..52741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJSM010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00023003 SAMN37820266-rid19923543.guided.30, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJSM010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00023003 SAMN37820266-rid19923543.denovo.53, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJSM010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00023003 SAMN37820266-rid19923543.denovo.54, whole genome shotgun sequence	3345..3457																																																											
GCA_032932795.1_PDT001950353.1_genomic.fna	Salmonella_enterica	0.5219	82.332 KB	19	aroC_45,dnaN_4,hemD_8,hisD_555,purE_27,sucA_56,thrA_8	1938	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_555	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJSO010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00044329 SAMN37820915-rid19926533.denovo.003, whole genome shotgun sequence	65148..65585	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJSO010000110.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00044329 SAMN37820915-rid19926533.guided.046, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032932815.1_PDT001950356.1_genomic.fna	Salmonella_enterica	0.5188	89.364 KB	21	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI(Gamma),IncI2(Delta)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJSL010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044301 SAMN37820913-rid19922533.denovo.067, whole genome shotgun sequence	11346..11783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQJSL010000127.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044301 SAMN37820913-rid19922533.guided.051, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI(Gamma)	100	137 / 141	DAQJSL010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044301 SAMN37820913-rid19922533.denovo.053, whole genome shotgun sequence	18533..18669	enterobacteriales	IncI2(Delta)	97.78	316 / 316	DAQJSL010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044301 SAMN37820913-rid19922533.denovo.029, whole genome shotgun sequence	29318..29633																																																avrA	DAQJSL010000008.1	114686..115555	99.425	870	0						
GCA_032932835.1_PDT001950354.1_genomic.fna	Salmonella_enterica	0.5217	69.757 KB	21	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	DAQJSN010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00044326 SAMN37820914-rid19921053.denovo.051, whole genome shotgun sequence	14077..14514	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	DAQJSN010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00044326 SAMN37820914-rid19921053.guided.021, whole genome shotgun sequence	14157..14594	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJSN010000005.1	61087..61955	99.425	870	0						
GCA_032932855.1_PDT001950352.1_genomic.fna	Salmonella_enterica	0.5214	57.668 KB	21	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	-:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	-	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJSP010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00044330 SAMN37820916-rid19925133.denovo.006, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJSP010000137.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00044330 SAMN37820916-rid19925133.guided.030, whole genome shotgun sequence	16429..16866	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQJSP010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00044330 SAMN37820916-rid19925133.denovo.048, whole genome shotgun sequence	33736..34159	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQJSP010000139.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00044330 SAMN37820916-rid19925133.guided.070, whole genome shotgun sequence	17839..18262	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJSP010000009.1	60809..61678	99.31	870	0						
GCA_032932875.1_PDT001950350.1_genomic.fna	Salmonella_enterica	0.5211	79.8 KB	20	aroC_22,dnaN_104,hemD_48,hisD_231,purE_114,sucA_107,thrA_4	1069	13:z:1,6	7	aac(6')-Iaa,aadA2b,aadA22,aac(6')-Iaa,aadA22,aadA2b,blaTEM-1B,blaTEM-1B,lnu(F),lnu(F),sul3,sul3,tet(A),tet(A)	1	parC_p.T57S	2	IncI1-I(Alpha),p0111	aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_48	hisD	100	100	hisD_231	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAQJSS010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00044339 SAMN37820918-rid19926523.denovo.012, whole genome shotgun sequence	83218..83655	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	DAQJSS010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00044339 SAMN37820918-rid19926523.denovo.086, whole genome shotgun sequence	4855..5634	Spectinomycin, Streptomycin	D43625	aadA22	100	792/792	DAQJSS010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00044339 SAMN37820918-rid19926523.denovo.100, whole genome shotgun sequence	238..1029	Spectinomycin, Streptomycin	AM261837	aac(6')-Iaa	96.8	438/438	DAQJSS010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00044339 SAMN37820918-rid19926523.guided.085, whole genome shotgun sequence	4936..5373	Amikacin, Tobramycin	NC_003197	aadA22	100	792/792	DAQJSS010000119.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00044339 SAMN37820918-rid19926523.guided.107, whole genome shotgun sequence	11..802	Spectinomycin, Streptomycin	AM261837	aadA2b	99.87	780/780	DAQJSS010000120.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00044339 SAMN37820918-rid19926523.guided.108, whole genome shotgun sequence	23..802	Spectinomycin, Streptomycin	D43625	blaTEM-1B	99.88	861/861	DAQJSS010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00044339 SAMN37820918-rid19926523.denovo.054, whole genome shotgun sequence	591..1451	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	99.88	861/861	DAQJSS010000117.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00044339 SAMN37820918-rid19926523.guided.101, whole genome shotgun sequence	632..1492	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	lnu(F)	100	822/822	DAQJSS010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00044339 SAMN37820918-rid19926523.denovo.100, whole genome shotgun sequence	1161..1982	Lincomycin	EU118119	lnu(F)	100	822/822	DAQJSS010000118.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00044339 SAMN37820918-rid19926523.guided.104, whole genome shotgun sequence	115..936	Lincomycin	EU118119	sul3	100	792/792	DAQJSS010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00044339 SAMN37820918-rid19926523.denovo.086, whole genome shotgun sequence	2382..3173	Sulfamethoxazole	AJ459418	sul3	100	792/792	DAQJSS010000115.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00044339 SAMN37820918-rid19926523.guided.094, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	DAQJSS010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00044339 SAMN37820918-rid19926523.denovo.054, whole genome shotgun sequence	2973..4172	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQJSS010000116.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00044339 SAMN37820918-rid19926523.guided.096, whole genome shotgun sequence	1333..2532	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQJSS010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00044339 SAMN37820918-rid19926523.denovo.054, whole genome shotgun sequence	9535..9676	enterobacteriales	p0111	98.87	885 / 885	DAQJSS010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00044339 SAMN37820918-rid19926523.denovo.014, whole genome shotgun sequence	65333..66217																																																avrA	DAQJSS010000039.1	43661..44530	99.54	870	0						
GCA_032932895.1_PDT001950346.1_genomic.fna	Salmonella_enterica	0.5217	83.391 KB	20	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJSQ010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00044581 SAMN37820922-rid19922513.denovo.09, whole genome shotgun sequence	51529..51966	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJSQ010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00044581 SAMN37820922-rid19922513.guided.38, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032932915.1_PDT001950349.1_genomic.fna	Salmonella_enterica	0.5231	56.991 KB	25	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJSR010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00044427 SAMN37820919-rid19919653.denovo.008, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJSR010000160.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00044427 SAMN37820919-rid19919653.guided.087, whole genome shotgun sequence	13977..14414	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJSR010000011.1	83890..84760	99.656	871	0						
GCA_032932935.1_PDT001950345.1_genomic.fna	Salmonella_enterica	0.5214	131.499 KB	12	aroC_45,dnaN_4,hemD_8,hisD_555,purE_27,sucA_56,thrA_8	1938	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_555	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJST010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00044604 SAMN37820923-rid19926513.denovo.01, whole genome shotgun sequence	103496..103933	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJST010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00044604 SAMN37820923-rid19926513.guided.29, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032932955.1_PDT001950344.1_genomic.fna	Salmonella_enterica	0.5215	127.688 KB	14	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	9,46:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9,46	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Waedenswil		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJSU010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00023026 SAMN37820267-rid19921043.denovo.27, whole genome shotgun sequence	52274..52711	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJSU010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00023026 SAMN37820267-rid19921043.guided.44, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJSU010000005.1	107898..108767	99.54	870	0						
GCA_032932975.1_PDT001950343.1_genomic.fna	Salmonella_enterica	0.5214	118.278 KB	11	aroC_4,dnaN_164,hemD_134,hisD_195,purE_8,sucA_105,thrA_22	2657	8:z10:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_4	dnaN	100	100	dnaN_164	hemD	100	100	hemD_134	hisD	100	100	hisD_195	purE	100	100	purE_8	sucA	100	100	sucA_105	thrA	100	100	thrA_22	8	z10	z6	Salmonella enterica subspecies enterica (subspecies I)	Molade or Wippra	The predicted serotypes share the same general formula: 8:z10:z6 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJSV010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Molade isolate AUSMDU00044647 SAMN37820924-rid19926503.denovo.02, whole genome shotgun sequence	20864..21301	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJSV010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Molade isolate AUSMDU00044647 SAMN37820924-rid19926503.guided.25, whole genome shotgun sequence	16437..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.74	114 / 114	DAQJSV010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Molade isolate AUSMDU00044647 SAMN37820924-rid19926503.denovo.61, whole genome shotgun sequence	1876..1989																																																						avrA	DAQJSV010000007.1	39144..40013	99.195	870	0						
GCA_032932995.1_PDT001950342.1_genomic.fna	Salmonella_enterica	0.5194	137.606 KB	14	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(S),IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJSW010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044668 SAMN37820925-rid19925123.denovo.08, whole genome shotgun sequence	11346..11783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQJSW010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044668 SAMN37820925-rid19925123.guided.46, whole genome shotgun sequence	17989..18426	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(S)	93.31	643 / 643	DAQJSW010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044668 SAMN37820925-rid19925123.denovo.27, whole genome shotgun sequence	50169..50811	enterobacteriales	IncFIB(pB171)	93.31	643 / 643	DAQJSW010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044668 SAMN37820925-rid19925123.denovo.27, whole genome shotgun sequence	50169..50811		enterobacteriales	IncFII(Yp)	90.91	231 / 230	DAQJSW010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044668 SAMN37820925-rid19925123.denovo.53, whole genome shotgun sequence	3235..3461																																									avrA	DAQJSW010000010.1	114443..115312	99.425	870	0						
GCA_032933015.1_PDT001950339.1_genomic.fna	Salmonella_enterica	0.5214	129.173 KB	15	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJSZ010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00044683 SAMN37820928-rid19919643.denovo.27, whole genome shotgun sequence	52306..52743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJSZ010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00044683 SAMN37820928-rid19919643.guided.37, whole genome shotgun sequence	32155..32592	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJSZ010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00044683 SAMN37820928-rid19919643.denovo.64, whole genome shotgun sequence	1380..1572																																																																	
GCA_032933025.1_PDT001950341.1_genomic.fna	Salmonella_enterica	0.5187	188.05 KB	8	aroC_43,dnaN_47,hemD_49,hisD_16,purE_41,sucA_15,thrA_3	241	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJSX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00044670 SAMN37820926-rid19921033.denovo.01, whole genome shotgun sequence	90274..90711	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJSX010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00044670 SAMN37820926-rid19921033.guided.27, whole genome shotgun sequence	7560..7997	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJSX010000008.1	99198..100067	98.966	870	0						
GCA_032933055.1_PDT001950338.1_genomic.fna	Salmonella_enterica	0.5226	97.306 KB	14	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	1,3,19:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	1,3,19	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	I 1,3,19:l,v:1,6	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJTA010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar London isolate AUSMDU00044684 SAMN37820929-rid19926493.denovo.24, whole genome shotgun sequence	12476..12913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQJTA010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar London isolate AUSMDU00044684 SAMN37820929-rid19926493.guided.59, whole genome shotgun sequence	8474..8911	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJTA010000009.1	36961..37830	99.425	870	0						
GCA_032933075.1_PDT001950337.1_genomic.fna	Salmonella_enterica	0.5214	99.04 KB	15	aroC_313,dnaN_652,hemD_250,hisD_236,purE_5,sucA_109,thrA_1	4025	35:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_313	dnaN	100	100	dnaN_652	hemD	100	100	hemD_250	hisD	100	100	hisD_236	purE	100	100	purE_5	sucA	100	100	sucA_109	thrA	100	100	thrA_1	35	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Monschaui		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJSY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Monschaui isolate AUSMDU00073173 SAMN37821016-rid19925103.denovo.01, whole genome shotgun sequence	12471..12908	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJSY010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Monschaui isolate AUSMDU00073173 SAMN37821016-rid19925103.guided.59, whole genome shotgun sequence	10143..10580	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032933095.1_PDT001950336.1_genomic.fna	Salmonella_enterica	0.5238	111.939 KB	13	aroC_397,dnaN_380,hemD_121,hisD_99,purE_411,sucA_9,thrA_406	1370	-:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_397	dnaN	100	100	dnaN_380	hemD	100	100	hemD_121	hisD	100	100	hisD_99	purE	100	100	purE_411	sucA	100	100	sucA_9	thrA	100	100	thrA_406	-	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:a:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJTB010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oslo isolate AUSMDU00073175 SAMN37821017-rid19922503.denovo.26, whole genome shotgun sequence	12545..12982	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJTB010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oslo isolate AUSMDU00073175 SAMN37821017-rid19922503.guided.46, whole genome shotgun sequence	10146..10583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJTB010000006.1	121563..122432	99.77	870	0						
GCA_032933115.1_PDT001950335.1_genomic.fna	Salmonella_enterica	0.52	387.397 KB	5	aroC_10,dnaN_7,hemD_21,hisD_1024,purE_15,sucA_12,thrA_12	4753	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_1024	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJTC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00073185 SAMN37821018-rid19925093.denovo.01, whole genome shotgun sequence	707112..707549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJTC010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00073185 SAMN37821018-rid19925093.guided.14, whole genome shotgun sequence	44280..44717	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJTC010000007.1	140151..141019	99.31	870	0						
GCA_032933135.1_PDT001950333.1_genomic.fna	Salmonella_enterica	0.5213	300.433 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	2	gyrA_p.S83F,parC_p.T57S	1	ColpVC	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJTE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00073192 SAMN37821020-rid19926483.denovo.01, whole genome shotgun sequence	797866..798303	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJTE010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00073192 SAMN37821020-rid19926483.guided.14, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQJTE010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00073192 SAMN37821020-rid19926483.denovo.28, whole genome shotgun sequence	4498..5358	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJTE010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00073192 SAMN37821020-rid19926483.guided.29, whole genome shotgun sequence	605..1465	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	ColpVC	98.96	193 / 193	DAQJTE010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00073192 SAMN37821020-rid19926483.denovo.33, whole genome shotgun sequence	804..996																																																						avrA	DAQJTE010000004.1	172195..173064	98.966	870	0						
GCA_032933155.1_PDT001950334.1_genomic.fna	Salmonella_enterica	0.5205	278.179 KB	6	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJTD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00073191 SAMN37821019-rid19921023.denovo.01, whole genome shotgun sequence	106148..106585	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJTD010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00073191 SAMN37821019-rid19921023.guided.14, whole genome shotgun sequence	34173..34610	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJTD010000010.1	105404..106273	99.54	870	0						
GCA_032933175.1_PDT001950329.1_genomic.fna	Salmonella_enterica	0.5207	197.877 KB	7	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJTG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00023398 SAMN37820277-rid19919633.denovo.01, whole genome shotgun sequence	254913..255350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJTG010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00023398 SAMN37820277-rid19919633.guided.22, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJTG010000006.1	151487..152353	98.966	870	0						
GCA_032933195.1_PDT001950330.1_genomic.fna	Salmonella_enterica	0.5224	150.098 KB	8	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFIB(pHCM2)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJTF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00073200 SAMN37821023-rid19925073.denovo.01, whole genome shotgun sequence	576961..577398	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJTF010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00073200 SAMN37821023-rid19925073.guided.32, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJTF010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00073200 SAMN37821023-rid19925073.denovo.44, whole genome shotgun sequence	557..687	enterobacteriales	IncFIB(pHCM2)	98.63	875 / 875	DAQJTF010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00073200 SAMN37821023-rid19925073.denovo.19, whole genome shotgun sequence	31010..31884																																																											
GCA_032933235.1_PDT001950328.1_genomic.fna	Salmonella_enterica	0.5195	196.365 KB	6	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	4	aac(6')-Iaa,aac(6')-Iaa,floR,floR,qnrS1,qnrS1,tet(A),tet(A)	1	parC_p.T57S	1	IncX2,IncX2	aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJTI010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00073203 SAMN37821024-rid19927493.denovo.02, whole genome shotgun sequence	433415..433852	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJTI010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00073203 SAMN37821024-rid19927493.guided.14, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197	floR	98.19	1214/1215	DAQJTI010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00073203 SAMN37821024-rid19927493.denovo.31, whole genome shotgun sequence	18252..19465	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	DAQJTI010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00073203 SAMN37821024-rid19927493.guided.32, whole genome shotgun sequence	4319..5532	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	DAQJTI010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00073203 SAMN37821024-rid19927493.denovo.31, whole genome shotgun sequence	14142..14798	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQJTI010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00073203 SAMN37821024-rid19927493.guided.32, whole genome shotgun sequence	8986..9642	Ciprofloxacin	AB187515	tet(A)	99.92	1200/1200	DAQJTI010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00073203 SAMN37821024-rid19927493.denovo.31, whole genome shotgun sequence	8288..9487	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQJTI010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00073203 SAMN37821024-rid19927493.guided.33, whole genome shotgun sequence	21..1220	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX2	100	374 / 374	DAQJTI010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00073203 SAMN37821024-rid19927493.denovo.31, whole genome shotgun sequence	770..1143	enterobacteriales	IncX2	100	374 / 374	DAQJTI010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00073203 SAMN37821024-rid19927493.guided.33, whole genome shotgun sequence	8365..8738																																																avrA	DAQJTI010000008.1	78594..79463	99.54	870	0						
GCA_032933255.1_PDT001950327.1_genomic.fna	Salmonella_enterica	0.5219	267.423 KB	5	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJTH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00073206 SAMN37821025-rid19925063.denovo.01, whole genome shotgun sequence	145344..145781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJTH010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00073206 SAMN37821025-rid19925063.guided.19, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJTH010000005.1	93729..94598	99.77	870	0						
GCA_032933275.1_PDT001950325.1_genomic.fna	Salmonella_enterica	0.5221	236.112 KB	7	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJTJ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00073215 SAMN37821027-rid19925053.denovo.06, whole genome shotgun sequence	136548..136985	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJTJ010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00073215 SAMN37821027-rid19925053.guided.25, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	97.71	262 / 262	DAQJTJ010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00073215 SAMN37821027-rid19925053.denovo.28, whole genome shotgun sequence	35781..36040																																																						avrA	DAQJTJ010000007.1	144577..145443	98.966	870	0						
GCA_032933295.1_PDT001950324.1_genomic.fna	Salmonella_enterica	0.5221	108.377 KB	14	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJTK010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00073219 SAMN37821028-rid19921013.denovo.22, whole genome shotgun sequence	52295..52732	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJTK010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00073219 SAMN37821028-rid19921013.guided.49, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJTK010000012.1	39532..40401	99.195	870	0						
GCA_032933315.1_PDT001950323.1_genomic.fna	Salmonella_enterica	0.5219	144.798 KB	11	aroC_117,dnaN_14,hemD_23,hisD_127,purE_151,sucA_7,thrA_22	501	-:k:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_117	dnaN	100	100	dnaN_14	hemD	100	100	hemD_23	hisD	100	100	hisD_127	purE	100	100	purE_151	sucA	100	100	sucA_7	thrA	100	100	thrA_22	-	k	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJTL010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00073220 SAMN37821029-rid19926473.denovo.02, whole genome shotgun sequence	248535..248972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJTL010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00073220 SAMN37821029-rid19926473.guided.37, whole genome shotgun sequence	16459..16896	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJTL010000006.1	158765..159633	99.655	870	0						
GCA_032933335.1_PDT001950322.1_genomic.fna	Salmonella_enterica	0.5219	108.5 KB	13	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(S),IncFII(SARC14)	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJTM010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00073224 SAMN37821030-rid19926463.denovo.23, whole genome shotgun sequence	52282..52719	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJTM010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00073224 SAMN37821030-rid19926463.guided.38, whole genome shotgun sequence	44286..44723	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	93.63	251 / 262	DAQJTM010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00073224 SAMN37821030-rid19926463.denovo.20, whole genome shotgun sequence	75690..75937	enterobacteriales	IncFII(SARC14)	95.07	446 / 445	DAQJTM010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00073224 SAMN37821030-rid19926463.denovo.20, whole genome shotgun sequence	76197..76641																																																											
GCA_032933355.1_PDT001950321.1_genomic.fna	Salmonella_enterica	0.5222	121.538 KB	13	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(S),IncFII(SARC14)	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJTO010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00073225 SAMN37821031-rid19922473.denovo.16, whole genome shotgun sequence	12513..12950	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJTO010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00073225 SAMN37821031-rid19922473.guided.47, whole genome shotgun sequence	10101..10538	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	93.63	251 / 262	DAQJTO010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00073225 SAMN37821031-rid19922473.denovo.19, whole genome shotgun sequence	75690..75937	enterobacteriales	IncFII(SARC14)	95.07	446 / 445	DAQJTO010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00073225 SAMN37821031-rid19922473.denovo.19, whole genome shotgun sequence	76197..76641																																																											
GCA_032933375.1_PDT001950320.1_genomic.fna	Salmonella_enterica	0.522	191.002 KB	7	aroC_5,dnaN_14,hemD_6,hisD_12,purE_5,sucA_14,thrA_58	166	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_14	thrA	100	100	thrA_58	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJTN010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00073228 SAMN37821032-rid19925043.denovo.17, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQJTN010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00073228 SAMN37821032-rid19925043.guided.23, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJTN010000012.1	39483..40352	99.655	870	0						
GCA_032933395.1_PDT001950318.1_genomic.fna	Salmonella_enterica	0.5187	231.368 KB	8	aroC_60,dnaN_429,hemD_17,hisD_662,purE_13,sucA_16,thrA_4	2494	9:l,z28:1,5	13	aac(6')-Iaa,aadA2,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aac(6')-Iaa,aadA2,aac(3)-IId,aph(6)-Id,aph(3'')-Ib,mef(B),mef(B),floR,floR,qnrS1,qnrS1,sul3,sul2,sul3,sul2,tet(A),tet(M),tet(A),tet(M),dfrA12,dfrA12	1	parC_p.T57S	3	IncFIA(HI1),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_60	dnaN	100	100	dnaN_429	hemD	100	100	hemD_17	hisD	100	100	hisD_662	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJTQ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.denovo.02, whole genome shotgun sequence	289767..290204	Amikacin, Tobramycin	NC_003197	aadA2	99.87	792/792	DAQJTQ010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.denovo.46, whole genome shotgun sequence	54..845	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	831/831	DAQJTQ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.denovo.50, whole genome shotgun sequence	4971..5801	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	DAQJTQ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.denovo.50, whole genome shotgun sequence	5807..6610	Streptomycin	AF321551	aac(3)-IId	99.77	861/861	DAQJTQ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.denovo.52, whole genome shotgun sequence	1406..2266	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aac(6')-Iaa	98.4	438/438	DAQJTQ010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.guided.30, whole genome shotgun sequence	30319..30756	Amikacin, Tobramycin	NC_003197	aadA2	99.87	792/792	DAQJTQ010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.guided.48, whole genome shotgun sequence	6042..6833	Spectinomycin, Streptomycin	JQ364967	aac(3)-IId	99.77	861/861	DAQJTQ010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.guided.55, whole genome shotgun sequence	1084..1944	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(6)-Id	100	831/831	DAQJTQ010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.guided.65, whole genome shotgun sequence	878..1708	Streptomycin	CP000971	aph(3'')-Ib	99.88	804/804	DAQJTQ010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.guided.65, whole genome shotgun sequence	69..872	Streptomycin	AF321551	mef(B)	100	1230/1230	DAQJTQ010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.denovo.44, whole genome shotgun sequence	9714..10943	Erythromycin, Azithromycin	FJ196385	mef(B)	100	1230/1230	DAQJTQ010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.guided.56, whole genome shotgun sequence	328..1557	Erythromycin, Azithromycin	FJ196385	floR	98.11	1214/1215	DAQJTQ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.denovo.59, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	DAQJTQ010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.guided.63, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	DAQJTQ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.denovo.50, whole genome shotgun sequence	520..1176	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQJTQ010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.guided.53, whole genome shotgun sequence	561..1217	Ciprofloxacin	AB187515	sul3	100	792/792	DAQJTQ010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.denovo.44, whole genome shotgun sequence	7162..7953	Sulfamethoxazole	AJ459418	sul2	100	816/816	DAQJTQ010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.denovo.68, whole genome shotgun sequence	12..827	Sulfamethoxazole	AY034138	sul3	100	792/792	DAQJTQ010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.guided.56, whole genome shotgun sequence	3318..4109	Sulfamethoxazole	AJ459418	sul2	100	816/816	DAQJTQ010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.guided.72, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(A)	99.92	1200/1200	DAQJTQ010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.denovo.58, whole genome shotgun sequence	1684..2883	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	DAQJTQ010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.denovo.62, whole genome shotgun sequence	845..2764	Doxycycline, Tetracycline, Minocycline	X04388	tet(A)	99.92	1200/1200	DAQJTQ010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.guided.57, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	DAQJTQ010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.guided.60, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	DAQJTQ010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.denovo.46, whole genome shotgun sequence	1253..1750	Trimethoprim	AM040708	dfrA12	100	498/498	DAQJTQ010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.guided.48, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIA(HI1)	100	388 / 388	DAQJTQ010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.denovo.26, whole genome shotgun sequence	8012..8399	enterobacteriales	IncHI1A	100	420 / 420	DAQJTQ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.denovo.15, whole genome shotgun sequence	94301..94720		enterobacteriales	IncHI1B(R27)	100	540 / 540	DAQJTQ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023399 SAMN37820278-rid19927483.denovo.15, whole genome shotgun sequence	80685..81224	R27																																								avrA	DAQJTQ010000008.1	150899..151768	99.54	870	0						
GCA_032933415.1_PDT001950317.1_genomic.fna	Salmonella_enterica	0.5212	93.892 KB	16	aroC_117,dnaN_135,hemD_18,hisD_12,purE_162,sucA_162,thrA_38	543	-:d:l,w	1	aac(6')-Iaa,aac(6')-Iaa	0		2	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_117	dnaN	100	100	dnaN_135	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_162	sucA	100	100	sucA_162	thrA	100	100	thrA_38	-	d	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:d:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJTS010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Livingstone isolate AUSMDU00073239 SAMN37821034-rid19925033.denovo.04, whole genome shotgun sequence	20896..21333	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJTS010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Livingstone isolate AUSMDU00073239 SAMN37821034-rid19925033.guided.66, whole genome shotgun sequence	14071..14508	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	93.89	131 / 131	DAQJTS010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Livingstone isolate AUSMDU00073239 SAMN37821034-rid19925033.denovo.75, whole genome shotgun sequence	2929..3059	enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJTS010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Livingstone isolate AUSMDU00073239 SAMN37821034-rid19925033.denovo.79, whole genome shotgun sequence	400..530		enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJTS010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Livingstone isolate AUSMDU00073239 SAMN37821034-rid19925033.denovo.86, whole genome shotgun sequence	547..675		enterobacteriales	Col440I	90.27	113 / 114	DAQJTS010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Livingstone isolate AUSMDU00073239 SAMN37821034-rid19925033.denovo.77, whole genome shotgun sequence	3345..3457																																													
GCA_032933435.1_PDT001950315.1_genomic.fna	Salmonella_enterica	0.5208	266.067 KB	6	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	DAQJTT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023418 SAMN37820280-rid19925023.denovo.01, whole genome shotgun sequence	414355..414792	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	DAQJTT010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023418 SAMN37820280-rid19925023.guided.27, whole genome shotgun sequence	2907..3344	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJTT010000003.1	173189..174057	99.425	870	0						
GCA_032933455.1_PDT001950316.1_genomic.fna	Salmonella_enterica	0.5233	227.923 KB	7	aroC_397,dnaN_380,hemD_121,hisD_99,purE_411,sucA_9,thrA_406	1370	7:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_397	dnaN	100	100	dnaN_380	hemD	100	100	hemD_121	hisD	100	100	hisD_99	purE	100	100	purE_411	sucA	100	100	sucA_9	thrA	100	100	thrA_406	7	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Oslo		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJTR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oslo isolate AUSMDU00023417 SAMN37820279-rid19921003.denovo.01, whole genome shotgun sequence	175118..175555	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJTR010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oslo isolate AUSMDU00023417 SAMN37820279-rid19921003.guided.27, whole genome shotgun sequence	16437..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJTR010000010.1	138498..139367	99.77	870	0						
GCA_032933475.1_PDT001950311.1_genomic.fna	Salmonella_enterica	0.5216	97.215 KB	16	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJTX010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00021481 SAMN37820203-rid19922463.denovo.15, whole genome shotgun sequence	61701..62138	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJTX010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00021481 SAMN37820203-rid19922463.guided.42, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032933495.1_PDT001950309.1_genomic.fna	Salmonella_enterica	0.5217	111.133 KB	12	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJTY010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00023452 SAMN37820285-rid19919593.denovo.10, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJTY010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00023452 SAMN37820285-rid19919593.guided.31, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJTY010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00023452 SAMN37820285-rid19919593.denovo.64, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJTY010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00023452 SAMN37820285-rid19919593.denovo.67, whole genome shotgun sequence	3345..3457																																																											
GCA_032933515.1_PDT001950308.1_genomic.fna	Salmonella_enterica	0.5218	248.987 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Larochelle		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQJTZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Larochelle isolate AUSMDU00023456 SAMN37820286-rid19923533.denovo.01, whole genome shotgun sequence	472495..472932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQJTZ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Larochelle isolate AUSMDU00023456 SAMN37820286-rid19923533.guided.21, whole genome shotgun sequence	24989..25426	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	DAQJTZ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Larochelle isolate AUSMDU00023456 SAMN37820286-rid19923533.denovo.35, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	DAQJTZ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Larochelle isolate AUSMDU00023456 SAMN37820286-rid19923533.guided.37, whole genome shotgun sequence	523..1167	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJTZ010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Larochelle isolate AUSMDU00023456 SAMN37820286-rid19923533.denovo.31, whole genome shotgun sequence	400..530	enterobacteriales	Col(pHAD28)	100	131 / 131	DAQJTZ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Larochelle isolate AUSMDU00023456 SAMN37820286-rid19923533.denovo.35, whole genome shotgun sequence	1522..1652																																																avrA	DAQJTZ010000006.1	90475..91344	98.966	870	0						
GCA_032933535.1_PDT001950307.1_genomic.fna	Salmonella_enterica	0.5196	136.524 KB	12	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJUA010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00023467 SAMN37820287-rid19919583.denovo.03, whole genome shotgun sequence	134057..134494	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQJUA010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00023467 SAMN37820287-rid19919583.guided.36, whole genome shotgun sequence	15553..15990	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJUA010000007.1	114582..115451	99.425	870	0						
GCA_032933555.1_PDT001950314.1_genomic.fna	Salmonella_enterica	0.5204	181.554 KB	9	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	6	aac(6')-Iaa,aadA7,aac(3)-Id,aac(6')-Iaa,aadA7,aac(3)-Id,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	4	Col156,IncI1-I(Alpha),IncU,pXuzhou21	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJTU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.denovo.01, whole genome shotgun sequence	52321..52758	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQJTU010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.denovo.46, whole genome shotgun sequence	9582..10379	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJTU010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.denovo.46, whole genome shotgun sequence	10455..10931	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	DAQJTU010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.guided.35, whole genome shotgun sequence	14474..14911	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQJTU010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.guided.53, whole genome shotgun sequence	1859..2656	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJTU010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.guided.53, whole genome shotgun sequence	1307..1783	Gentamicin, Astromicin, Fortimicin	AB114632	blaTEM-1B	100	861/861	DAQJTU010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.denovo.61, whole genome shotgun sequence	408..1268	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJTU010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.guided.60, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	DAQJTU010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.denovo.46, whole genome shotgun sequence	8238..9077	Sulfamethoxazole	U12338	sul1	100	840/840	DAQJTU010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.guided.53, whole genome shotgun sequence	3161..4000	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQJTU010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.denovo.46, whole genome shotgun sequence	133..1332	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQJTU010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.guided.49, whole genome shotgun sequence	5691..6890	Doxycycline, Tetracycline	AJ517790	tet(A)	99.81	1037/1200	DAQJTU010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.guided.64, whole genome shotgun sequence	1..1037	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																													gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	Col156	98.03	152 / 154	DAQJTU010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.denovo.56, whole genome shotgun sequence	3377..3528	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQJTU010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.denovo.33, whole genome shotgun sequence	22337..22478		enterobacteriales	IncU	99.82	565 / 565	DAQJTU010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.denovo.51, whole genome shotgun sequence	4799..5363		enterobacteriales	pXuzhou21	92.5	720 / 720	DAQJTU010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00023420 SAMN37820281-rid19919613.denovo.32, whole genome shotgun sequence	26287..27006																																		avrA	DAQJTU010000008.1	94719..95588	99.31	870	0						
GCA_032933595.1_PDT001950313.1_genomic.fna	Salmonella_enterica	0.5202	223.011 KB	8	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQJTV010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00023424 SAMN37820282-rid19926453.denovo.06, whole genome shotgun sequence	175295..175732	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQJTV010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00023424 SAMN37820282-rid19926453.guided.14, whole genome shotgun sequence	36657..37094	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJTV010000012.1	108798..109667	99.31	870	0						
GCA_032933615.1_PDT001950312.1_genomic.fna	Salmonella_enterica	0.5198	158.183 KB	10	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJTW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00023434 SAMN37820283-rid19919603.denovo.01, whole genome shotgun sequence	376113..376550	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJTW010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00023434 SAMN37820283-rid19919603.guided.30, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJTW010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00023434 SAMN37820283-rid19919603.denovo.60, whole genome shotgun sequence	547..675																																																						avrA	DAQJTW010000007.1	145186..146055	98.966	870	0						
GCA_032933635.1_PDT001950306.1_genomic.fna	Salmonella_enterica	0.5215	190.888 KB	8	aroC_2,dnaN_2,hemD_9,hisD_7,purE_105,sucA_19,thrA_86	2039	-:l,v:e,n,z15	9	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,blaLAP-2,blaOXA-10,blaLAP-2,blaOXA-10,blaOXA-10,cmlA1,cmlA1,cmlA1,qnrS1,qnrS1,ARR-2,ARR-2,ARR-2,tet(A),tet(A),dfrA14,dfrA14,dfrA14	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_9	hisD	100	100	hisD_7	purE	100	100	purE_105	sucA	100	100	sucA_19	thrA	100	100	thrA_86	-	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:l,v:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJUB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.denovo.01, whole genome shotgun sequence	12471..12908	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	DAQJUB010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.denovo.45, whole genome shotgun sequence	730..1521	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	DAQJUB010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.denovo.45, whole genome shotgun sequence	730..1521	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	98.17	438/438	DAQJUB010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.guided.41, whole genome shotgun sequence	10344..10781	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	DAQJUB010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.guided.43, whole genome shotgun sequence	4332..5123	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	DAQJUB010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.guided.43, whole genome shotgun sequence	4332..5123	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	DAQJUB010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.guided.44, whole genome shotgun sequence	4332..5123	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	DAQJUB010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.guided.44, whole genome shotgun sequence	4332..5123	Spectinomycin, Streptomycin	JQ414041	blaLAP-2	100	858/858	DAQJUB010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.denovo.39, whole genome shotgun sequence	9216..10073	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaOXA-10	100	801/801	DAQJUB010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.denovo.45, whole genome shotgun sequence	1538..2338	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaLAP-2	100	858/858	DAQJUB010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.guided.38, whole genome shotgun sequence	6484..7341	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaOXA-10	100	801/801	DAQJUB010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.guided.43, whole genome shotgun sequence	3515..4315	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaOXA-10	100	801/801	DAQJUB010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.guided.44, whole genome shotgun sequence	3515..4315	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	cmlA1	99.68	1260/1260	DAQJUB010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.denovo.45, whole genome shotgun sequence	2603..3862	Chloramphenicol	M64556	cmlA1	99.6	1260/1260	DAQJUB010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.guided.43, whole genome shotgun sequence	1991..3250	Chloramphenicol	M64556	cmlA1	99.68	1260/1260	DAQJUB010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.guided.44, whole genome shotgun sequence	1991..3250	Chloramphenicol	M64556	qnrS1	100	657/657	DAQJUB010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.denovo.39, whole genome shotgun sequence	6963..7619	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQJUB010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.guided.38, whole genome shotgun sequence	8938..9594	Ciprofloxacin	AB187515	ARR-2	100	453/453	DAQJUB010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.denovo.45, whole genome shotgun sequence	4183..4635	Rifampicin	HQ141279	ARR-2	100	453/453	DAQJUB010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.guided.43, whole genome shotgun sequence	1218..1670	Rifampicin	HQ141279	ARR-2	100	453/453	DAQJUB010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.guided.44, whole genome shotgun sequence	1218..1670	Rifampicin	HQ141279	tet(A)	100	1200/1200	DAQJUB010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.denovo.39, whole genome shotgun sequence	14449..15648	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQJUB010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.guided.38, whole genome shotgun sequence	909..2108	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQJUB010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.denovo.45, whole genome shotgun sequence	182..655	Trimethoprim	KF921535	dfrA14	100	474/474	DAQJUB010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.guided.43, whole genome shotgun sequence	5198..5671	Trimethoprim	KF921535	dfrA14	100	474/474	DAQJUB010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023620 SAMN37820288-rid19920993.guided.44, whole genome shotgun sequence	5198..5671	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJUB010000006.1	145617..146486	99.655	870	0						
GCA_032933655.1_PDT001950305.1_genomic.fna	Salmonella_enterica	0.5222	79.223 KB	19	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJUC010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042319 SAMN37820850-rid19925013.denovo.020, whole genome shotgun sequence	19765..20202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJUC010000112.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042319 SAMN37820850-rid19925013.guided.045, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032933675.1_PDT001950304.1_genomic.fna	Salmonella_enterica	0.5211	137.975 KB	11	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	-:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	-	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJUD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00042327 SAMN37820851-rid19919573.denovo.01, whole genome shotgun sequence	225864..226301	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJUD010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00042327 SAMN37820851-rid19919573.guided.14, whole genome shotgun sequence	16429..16866	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQJUD010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00042327 SAMN37820851-rid19919573.denovo.04, whole genome shotgun sequence	150367..150790	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQJUD010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00042327 SAMN37820851-rid19919573.guided.53, whole genome shotgun sequence	8063..8486	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJUD010000006.1	125024..125893	99.31	870	0						
GCA_032933685.1_PDT001950302.1_genomic.fna	Salmonella_enterica	0.5218	382.458 KB	5	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJUE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042353 SAMN37820853-rid19919563.denovo.01, whole genome shotgun sequence	159597..160034	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJUE010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042353 SAMN37820853-rid19919563.guided.28, whole genome shotgun sequence	14116..14553	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQJUE010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042353 SAMN37820853-rid19919563.denovo.14, whole genome shotgun sequence	76402..76543																																																						avrA	DAQJUE010000006.1	108195..109064	99.655	870	0						
GCA_032933715.1_PDT001950301.1_genomic.fna	Salmonella_enterica	0.5213	144.478 KB	13	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJUF010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00022806 SAMN37820260-rid19922453.denovo.06, whole genome shotgun sequence	20889..21326	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJUF010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00022806 SAMN37820260-rid19922453.guided.35, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJUF010000004.1	107175..108044	99.195	870	0						
GCA_032933735.1_PDT001950300.1_genomic.fna	Salmonella_enterica	0.5214	71.828 KB	19	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJUG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042370 SAMN37820854-rid19924143.denovo.001, whole genome shotgun sequence	163948..164385	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJUG010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042370 SAMN37820854-rid19924143.guided.035, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJUG010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042370 SAMN37820854-rid19924143.denovo.087, whole genome shotgun sequence	1604..1734																																																																	
GCA_032933755.1_PDT001950299.1_genomic.fna	Salmonella_enterica	0.5218	79.623 KB	17	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJUI010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042372 SAMN37820855-rid19919553.denovo.06, whole genome shotgun sequence	65146..65583	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJUI010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042372 SAMN37820855-rid19919553.guided.33, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032933775.1_PDT001950298.1_genomic.fna	Salmonella_enterica	0.5221	162.438 KB	10	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA7,aac(3)-Id,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA7,aac(3)-Id,blaTEM-1B,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	1	Col156	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJUH010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.denovo.09, whole genome shotgun sequence	17790..18227	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQJUH010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.denovo.47, whole genome shotgun sequence	15791..16627	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQJUH010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.denovo.47, whole genome shotgun sequence	16627..17430	Streptomycin	AF321551	aadA7	100	798/798	DAQJUH010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.denovo.47, whole genome shotgun sequence	1805..2602	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJUH010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.denovo.47, whole genome shotgun sequence	1253..1729	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	DAQJUH010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.guided.35, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQJUH010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.guided.49, whole genome shotgun sequence	15792..16628	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQJUH010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.guided.49, whole genome shotgun sequence	16628..17431	Streptomycin	AF321551	aadA7	100	798/798	DAQJUH010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.guided.49, whole genome shotgun sequence	1806..2603	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJUH010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.guided.49, whole genome shotgun sequence	1254..1730	Gentamicin, Astromicin, Fortimicin	AB114632	blaTEM-1B	100	861/861	DAQJUH010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.denovo.68, whole genome shotgun sequence	408..1268	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	99.88	861/861	DAQJUH010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.guided.66, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJUH010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.guided.67, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	DAQJUH010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.denovo.47, whole genome shotgun sequence	3107..3946	Sulfamethoxazole	U12338	sul1	100	840/840	DAQJUH010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.guided.49, whole genome shotgun sequence	3108..3947	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQJUH010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.denovo.47, whole genome shotgun sequence	10852..12051	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQJUH010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.guided.49, whole genome shotgun sequence	10853..12052	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	Col156	99.35	154 / 154	DAQJUH010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00042377 SAMN37820856-rid19923523.denovo.59, whole genome shotgun sequence	630..783																																																						avrA	DAQJUH010000007.1	118718..119587	99.31	870	0						
GCA_032933815.1_PDT001950296.1_genomic.fna	Salmonella_enterica	0.5198	52.712 KB	33	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	-:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	-	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJUK010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042442 SAMN37820858-rid19920983.denovo.021, whole genome shotgun sequence	12471..12908	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJUK010000177.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042442 SAMN37820858-rid19920983.guided.031, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJUK010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042442 SAMN37820858-rid19920983.denovo.017, whole genome shotgun sequence	59132..59458	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJUK010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042442 SAMN37820858-rid19920983.denovo.086, whole genome shotgun sequence	2820..3449																																																avrA	DAQJUK010000047.1	39589..40458	99.77	870	0						
GCA_032933835.1_PDT001950295.1_genomic.fna	Salmonella_enterica	0.5226	96.246 KB	17	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJUL010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00042447 SAMN37820859-rid19925003.denovo.025, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJUL010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00042447 SAMN37820859-rid19925003.guided.053, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032933845.1_PDT001950294.1_genomic.fna	Salmonella_enterica	0.5228	74.995 KB	19	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJUM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00042461 SAMN37820860-rid19919533.denovo.001, whole genome shotgun sequence	244363..244800	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJUM010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00042461 SAMN37820860-rid19919533.guided.034, whole genome shotgun sequence	14054..14491	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	94.66	131 / 131	DAQJUM010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00042461 SAMN37820860-rid19919533.denovo.098, whole genome shotgun sequence	180..310																																																						avrA	DAQJUM010000022.1	61516..62386	99.656	871	0						
GCA_032933895.1_PDT001950292.1_genomic.fna	Salmonella_enterica	0.5225	83.368 KB	16	aroC_14,dnaN_72,hemD_115,hisD_12,purE_6,sucA_19,thrA_15	4491	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI(Gamma)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_115	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJUO010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Litchfield isolate AUSMDU00042590 SAMN37820862-rid19919523.denovo.23, whole genome shotgun sequence	12504..12941	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJUO010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Litchfield isolate AUSMDU00042590 SAMN37820862-rid19919523.guided.33, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI(Gamma)	100	137 / 141	DAQJUO010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Litchfield isolate AUSMDU00042590 SAMN37820862-rid19919523.denovo.51, whole genome shotgun sequence	18533..18669																																																						avrA	DAQJUO010000004.1	111541..112410	99.655	870	0						
GCA_032933915.1_PDT001950290.1_genomic.fna	Salmonella_enterica	0.5203	129.479 KB	13	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJUQ010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00022817 SAMN37820261-rid19924133.denovo.12, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJUQ010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00022817 SAMN37820261-rid19924133.guided.44, whole genome shotgun sequence	18833..19270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJUQ010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00022817 SAMN37820261-rid19924133.denovo.57, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJUQ010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00022817 SAMN37820261-rid19924133.denovo.58, whole genome shotgun sequence	3345..3457																																																											
GCA_032933935.1_PDT001950289.1_genomic.fna	Salmonella_enterica	0.5218	116.337 KB	15	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJUP010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00042624 SAMN37820864-rid19920973.denovo.30, whole genome shotgun sequence	12499..12936	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJUP010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00042624 SAMN37820864-rid19920973.guided.57, whole genome shotgun sequence	2534..2971	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJUP010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00042624 SAMN37820864-rid19920973.denovo.78, whole genome shotgun sequence	1380..1572																																																																	
GCA_032933955.1_PDT001950287.1_genomic.fna	Salmonella_enterica	0.5218	85.242 KB	17	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJUS010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042643 SAMN37820866-rid19919513.denovo.07, whole genome shotgun sequence	65215..65652	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJUS010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042643 SAMN37820866-rid19919513.guided.45, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJUS010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042643 SAMN37820866-rid19919513.denovo.78, whole genome shotgun sequence	1604..1734																																																																	
GCA_032933975.1_PDT001950288.1_genomic.fna	Salmonella_enterica	0.5217	114.237 KB	17	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJUR010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00042626 SAMN37820865-rid19923513.denovo.23, whole genome shotgun sequence	52423..52860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJUR010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00042626 SAMN37820865-rid19923513.guided.39, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJUR010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00042626 SAMN37820865-rid19923513.denovo.78, whole genome shotgun sequence	1380..1572																																																																	
GCA_032933995.1_PDT001950285.1_genomic.fna	Salmonella_enterica	0.521	81.335 KB	21	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	-:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	-	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,s,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJUU010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00042675 SAMN37820868-rid19924993.denovo.058, whole genome shotgun sequence	12513..12950	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJUU010000152.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00042675 SAMN37820868-rid19924993.guided.060, whole genome shotgun sequence	14462..14899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJUU010000104.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00042675 SAMN37820868-rid19924993.denovo.107, whole genome shotgun sequence	547..675																																																						avrA	DAQJUU010000006.1	35341..36210	98.966	870	0						
GCA_032934015.1_PDT001950284.1_genomic.fna	Salmonella_enterica	0.5189	113.521 KB	14	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJUT010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042680 SAMN37820869-rid19919503.denovo.07, whole genome shotgun sequence	12505..12942	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJUT010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042680 SAMN37820869-rid19919503.guided.45, whole genome shotgun sequence	14313..14750	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJUT010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042680 SAMN37820869-rid19919503.denovo.17, whole genome shotgun sequence	89237..89563	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJUT010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042680 SAMN37820869-rid19919503.denovo.57, whole genome shotgun sequence	2803..3432																																																avrA	DAQJUT010000011.1	81482..82351	99.77	870	0						
GCA_032934035.1_PDT001950283.1_genomic.fna	Salmonella_enterica	0.5219	88.704 KB	20	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJUV010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00042705 SAMN37820870-rid19926423.denovo.031, whole genome shotgun sequence	11351..11788	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJUV010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00042705 SAMN37820870-rid19926423.guided.030, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJUV010000091.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00042705 SAMN37820870-rid19926423.denovo.094, whole genome shotgun sequence	1380..1572																																																																	
GCA_032934075.1_PDT001950281.1_genomic.fna	Salmonella_enterica	0.5212	150.259 KB	11	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	-:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	-	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:m,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJUX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00042776 SAMN37820872-rid19922433.denovo.01, whole genome shotgun sequence	138211..138648	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJUX010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00042776 SAMN37820872-rid19922433.guided.34, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.81	113 / 114	DAQJUX010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00042776 SAMN37820872-rid19922433.denovo.55, whole genome shotgun sequence	4040..4151																																																																	
GCA_032934095.1_PDT001950280.1_genomic.fna	Salmonella_enterica	0.5196	174.816 KB	9	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	-:f,g:-	12	aac(6')-Iaa,aadA2,aadA1,aac(6')-Iaa,aadA2,aadA1,blaTEM-1B,blaTEM-1B,cml,floR,floR,cml,qnrS1,qnrS1,sul3,sul2,sul2,sul3,tet(A),tet(M),tet(A),tet(M),dfrA12,dfrA12	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	-	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQJUY010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.denovo.004, whole genome shotgun sequence	157531..157968	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	DAQJUY010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.denovo.051, whole genome shotgun sequence	1164..1955	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	DAQJUY010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.denovo.060, whole genome shotgun sequence	564..1355	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.03	438/438	DAQJUY010000105.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.guided.021, whole genome shotgun sequence	10438..10875	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	DAQJUY010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.guided.052, whole genome shotgun sequence	3348..4139	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	DAQJUY010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.guided.074, whole genome shotgun sequence	1295..2086	Spectinomycin, Streptomycin	JQ414041	blaTEM-1B	100	861/861	DAQJUY010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.denovo.060, whole genome shotgun sequence	2759..3619	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJUY010000116.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.guided.084, whole genome shotgun sequence	1032..1892	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	DAQJUY010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.denovo.060, whole genome shotgun sequence	1374..2295	Chloramphenicol	M22614	floR	98.11	1214/1215	DAQJUY010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.denovo.061, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	DAQJUY010000110.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.guided.066, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	cml	96.66	929/909	DAQJUY010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.guided.074, whole genome shotgun sequence	355..1276	Chloramphenicol	M22614	qnrS1	100	657/657	DAQJUY010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.denovo.063, whole genome shotgun sequence	108..764	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQJUY010000115.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.guided.081, whole genome shotgun sequence	1458..2114	Ciprofloxacin	AB187515	sul3	100	792/792	DAQJUY010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.denovo.049, whole genome shotgun sequence	3128..3919	Sulfamethoxazole	AJ459418	sul2	100	816/816	DAQJUY010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.denovo.072, whole genome shotgun sequence	329..1144	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQJUY010000112.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.guided.069, whole genome shotgun sequence	1898..2713	Sulfamethoxazole	AY034138	sul3	100	792/792	DAQJUY010000113.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.guided.073, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	DAQJUY010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.denovo.056, whole genome shotgun sequence	3196..4395	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	DAQJUY010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.denovo.070, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(A)	99.92	1200/1200	DAQJUY010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.guided.064, whole genome shotgun sequence	887..2086	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	DAQJUY010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.guided.068, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	DAQJUY010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.denovo.051, whole genome shotgun sequence	2363..2860	Trimethoprim	AM040708	dfrA12	100	498/498	DAQJUY010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.guided.052, whole genome shotgun sequence	2443..2940	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQJUY010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Rissen isolate AUSMDU00046232 SAMN37820959-rid19924123.denovo.059, whole genome shotgun sequence	3134..3264																																																						avrA	DAQJUY010000001.1	39454..40323	99.195	870	0						
GCA_032934115.1_PDT001950279.1_genomic.fna	Salmonella_enterica	0.5205	83.767 KB	18	aroC_140,dnaN_392,hemD_40,hisD_11,purE_140,sucA_180,thrA_597	2754	3,10:z10:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(S),IncFII(SARC14)	aroC	100	100	aroC_140	dnaN	100	100	dnaN_392	hemD	100	100	hemD_40	hisD	100	100	hisD_11	purE	100	100	purE_140	sucA	100	100	sucA_180	thrA	100	100	thrA_597	3,10	z10	1,5	Salmonella enterica subspecies enterica (subspecies I)	Lexington		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJUZ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lexington isolate AUSMDU00046288 SAMN37820960-rid19922423.denovo.022, whole genome shotgun sequence	52341..52778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJUZ010000121.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lexington isolate AUSMDU00046288 SAMN37820960-rid19922423.guided.064, whole genome shotgun sequence	7476..7913	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	98.42	253 / 262	DAQJUZ010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lexington isolate AUSMDU00046288 SAMN37820960-rid19922423.denovo.041, whole genome shotgun sequence	36802..37054	enterobacteriales	IncFII(SARC14)	100	445 / 445	DAQJUZ010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Lexington isolate AUSMDU00046288 SAMN37820960-rid19922423.denovo.041, whole genome shotgun sequence	37314..37758																																																											
GCA_032934125.1_PDT001950278.1_genomic.fna	Salmonella_enterica	0.5217	86.311 KB	19	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJVA010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00046435 SAMN37820961-rid19923503.denovo.57, whole genome shotgun sequence	11338..11775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJVA010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00046435 SAMN37820961-rid19923503.guided.09, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJVA010000007.1	61543..62412	99.54	870	0						
GCA_032934155.1_PDT001950277.1_genomic.fna	Salmonella_enterica	0.5213	81.152 KB	15	aroC_99,dnaN_175,hemD_46,hisD_11,purE_111,sucA_180,thrA_1	580	9,46:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_99	dnaN	100	100	dnaN_175	hemD	100	100	hemD_46	hisD	100	100	hisD_11	purE	100	100	purE_111	sucA	100	100	sucA_180	thrA	100	100	thrA_1	9,46	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	I 9,46:y:1,5	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAQJVB010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orion isolate AUSMDU00046442 SAMN37820962-rid19920953.denovo.004, whole genome shotgun sequence	56568..57005	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAQJVB010000119.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orion isolate AUSMDU00046442 SAMN37820962-rid19920953.guided.018, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032934175.1_PDT001950276.1_genomic.fna	Salmonella_enterica	0.5237	61.213 KB	24	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJVC010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00046509 SAMN37820963-rid19920943.denovo.061, whole genome shotgun sequence	12494..12931	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJVC010000138.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00046509 SAMN37820963-rid19920943.guided.060, whole genome shotgun sequence	14135..14572	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJVC010000003.1	124013..124882	99.77	870	0						
GCA_032934195.1_PDT001950275.1_genomic.fna	Salmonella_enterica	0.5203	430.046 KB	4	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJVD010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023066 SAMN37820271-rid19924983.denovo.02, whole genome shotgun sequence	573222..573659	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJVD010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023066 SAMN37820271-rid19924983.guided.16, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	97.33	262 / 262	DAQJVD010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00023066 SAMN37820271-rid19924983.denovo.28, whole genome shotgun sequence	3975..4234																																																						avrA	DAQJVD010000005.1	151376..152244	99.425	870	0						
GCA_032934215.1_PDT001950273.1_genomic.fna	Salmonella_enterica	0.522	88.002 KB	18	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	6	aac(6')-Iaa,aadA7,aac(3)-Id,aac(6')-Iaa,aadA7,aac(3)-Id,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJVF010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00046615 SAMN37820965-rid19926413.denovo.027, whole genome shotgun sequence	52252..52689	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQJVF010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00046615 SAMN37820965-rid19926413.denovo.070, whole genome shotgun sequence	11943..12740	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJVF010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00046615 SAMN37820965-rid19926413.denovo.070, whole genome shotgun sequence	12816..13292	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	DAQJVF010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00046615 SAMN37820965-rid19926413.guided.053, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQJVF010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00046615 SAMN37820965-rid19926413.guided.074, whole genome shotgun sequence	46..843	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJVF010000105.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00046615 SAMN37820965-rid19926413.guided.096, whole genome shotgun sequence	1147..1623	Gentamicin, Astromicin, Fortimicin	AB114632	blaTEM-1B	100	861/861	DAQJVF010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00046615 SAMN37820965-rid19926413.denovo.092, whole genome shotgun sequence	406..1266	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJVF010000104.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00046615 SAMN37820965-rid19926413.guided.090, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	DAQJVF010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00046615 SAMN37820965-rid19926413.denovo.070, whole genome shotgun sequence	10599..11438	Sulfamethoxazole	U12338	sul1	100	840/840	DAQJVF010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00046615 SAMN37820965-rid19926413.guided.074, whole genome shotgun sequence	1348..2187	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQJVF010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00046615 SAMN37820965-rid19926413.denovo.070, whole genome shotgun sequence	2341..3540	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQJVF010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00046615 SAMN37820965-rid19926413.guided.074, whole genome shotgun sequence	9246..10445	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	DAQJVF010000025.1	39527..40396	99.31	870	0						
GCA_032934235.1_PDT001950274.1_genomic.fna	Salmonella_enterica	0.5225	90.867 KB	17	aroC_117,dnaN_14,hemD_23,hisD_127,purE_6,sucA_7,thrA_22	462	-:k:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_117	dnaN	100	100	dnaN_14	hemD	100	100	hemD_23	hisD	100	100	hisD_127	purE	100	100	purE_6	sucA	100	100	sucA_7	thrA	100	100	thrA_22	-	k	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJVE010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00046521 SAMN37820964-rid19922413.denovo.017, whole genome shotgun sequence	38062..38499	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJVE010000105.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00046521 SAMN37820964-rid19922413.guided.065, whole genome shotgun sequence	10122..10559	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	DAQJVE010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00046521 SAMN37820964-rid19922413.denovo.042, whole genome shotgun sequence	29630..29889																																																						avrA	DAQJVE010000027.1	61528..62397	99.77	870	0						
GCA_032934255.1_PDT001950270.1_genomic.fna	Salmonella_enterica	0.5229	82.88 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJVJ010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00046820 SAMN37820968-rid19924113.denovo.019, whole genome shotgun sequence	52343..52780	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJVJ010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00046820 SAMN37820968-rid19924113.guided.059, whole genome shotgun sequence	14500..14937	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJVJ010000013.1	61871..62740	99.655	870	0						
GCA_032934275.1_PDT001950271.1_genomic.fna	Salmonella_enterica	0.5221	93.591 KB	14	aroC_99,dnaN_175,hemD_46,hisD_11,purE_111,sucA_180,thrA_1	580	-:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_99	dnaN	100	100	dnaN_175	hemD	100	100	hemD_46	hisD	100	100	hisD_11	purE	100	100	purE_111	sucA	100	100	sucA_180	thrA	100	100	thrA_1	-	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:y:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAQJVH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orion isolate AUSMDU00046758 SAMN37820967-rid19922403.denovo.01, whole genome shotgun sequence	180234..180671	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAQJVH010000094.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orion isolate AUSMDU00046758 SAMN37820967-rid19922403.guided.63, whole genome shotgun sequence	14075..14512	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032934295.1_PDT001950272.1_genomic.fna	Salmonella_enterica	0.52	92.887 KB	19	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI(Gamma)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJVG010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00046672 SAMN37820966-rid19919483.denovo.028, whole genome shotgun sequence	11366..11803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQJVG010000118.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00046672 SAMN37820966-rid19919483.guided.013, whole genome shotgun sequence	44263..44700	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI(Gamma)	100	137 / 141	DAQJVG010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00046672 SAMN37820966-rid19919483.denovo.020, whole genome shotgun sequence	67384..67520																																																						avrA	DAQJVG010000010.1	114568..115437	99.425	870	0						
GCA_032934315.1_PDT001950268.1_genomic.fna	Salmonella_enterica	0.5225	98.99 KB	17	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJVK010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00046926 SAMN37820970-rid19926403.denovo.05, whole genome shotgun sequence	154400..154837	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJVK010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00046926 SAMN37820970-rid19926403.guided.64, whole genome shotgun sequence	7451..7888	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJVK010000007.1	60547..61416	99.655	870	0						
GCA_032934335.1_PDT001950269.1_genomic.fna	Salmonella_enterica	0.5206	98.643 KB	17	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJVI010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00046915 SAMN37820969-rid19922393.denovo.34, whole genome shotgun sequence	15439..15876	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJVI010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00046915 SAMN37820969-rid19922393.guided.56, whole genome shotgun sequence	8398..8835	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJVI010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00046915 SAMN37820969-rid19922393.denovo.78, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJVI010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00046915 SAMN37820969-rid19922393.denovo.79, whole genome shotgun sequence	3345..3457																																																											
GCA_032934355.1_PDT001950267.1_genomic.fna	Salmonella_enterica	0.5215	180.969 KB	10	aroC_5,dnaN_75,hemD_54,hisD_4,purE_76,sucA_109,thrA_75	696	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_75	hemD	100	100	hemD_54	hisD	100	100	hisD_4	purE	100	100	purE_76	sucA	100	100	sucA_109	thrA	100	100	thrA_75	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJVL010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00047016 SAMN37820971-rid19920933.denovo.02, whole genome shotgun sequence	250318..250755	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJVL010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00047016 SAMN37820971-rid19920933.guided.32, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJVL010000004.1	162393..163262	99.655	870	0						
GCA_032934375.1_PDT001950266.1_genomic.fna	Salmonella_enterica	0.522	97.402 KB	17	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	6	aac(6')-Iaa,aadA7,aac(3)-Id,aac(6')-Iaa,aadA7,aac(3)-Id,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJVM010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00047063 SAMN37820972-rid19920923.denovo.26, whole genome shotgun sequence	52325..52762	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQJVM010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00047063 SAMN37820972-rid19920923.denovo.69, whole genome shotgun sequence	11943..12740	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJVM010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00047063 SAMN37820972-rid19920923.denovo.69, whole genome shotgun sequence	12816..13292	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	DAQJVM010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00047063 SAMN37820972-rid19920923.guided.44, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQJVM010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00047063 SAMN37820972-rid19920923.guided.72, whole genome shotgun sequence	87..884	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJVM010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00047063 SAMN37820972-rid19920923.guided.91, whole genome shotgun sequence	1147..1623	Gentamicin, Astromicin, Fortimicin	AB114632	blaTEM-1B	100	861/861	DAQJVM010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00047063 SAMN37820972-rid19920923.denovo.88, whole genome shotgun sequence	406..1266	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJVM010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00047063 SAMN37820972-rid19920923.guided.87, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	DAQJVM010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00047063 SAMN37820972-rid19920923.denovo.69, whole genome shotgun sequence	10599..11438	Sulfamethoxazole	U12338	sul1	100	840/840	DAQJVM010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00047063 SAMN37820972-rid19920923.guided.72, whole genome shotgun sequence	1389..2228	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQJVM010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00047063 SAMN37820972-rid19920923.denovo.69, whole genome shotgun sequence	2341..3540	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQJVM010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00047063 SAMN37820972-rid19920923.guided.72, whole genome shotgun sequence	9287..10486	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	DAQJVM010000009.1	119189..120058	99.31	870	0						
GCA_032934395.1_PDT001950265.1_genomic.fna	Salmonella_enterica	0.5216	91.28 KB	16	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJVN010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00047092 SAMN37820973-rid19924973.denovo.017, whole genome shotgun sequence	11329..11766	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJVN010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00047092 SAMN37820973-rid19924973.guided.009, whole genome shotgun sequence	33644..34081	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJVN010000006.1	98386..99255	99.77	870	0						
GCA_032934435.1_PDT001950262.1_genomic.fna	Salmonella_enterica	0.5206	111.466 KB	15	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJVP010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00047112 SAMN37820975-rid19919473.denovo.23, whole genome shotgun sequence	52379..52816	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJVP010000086.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00047112 SAMN37820975-rid19919473.guided.38, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJVP010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00047112 SAMN37820975-rid19919473.denovo.69, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJVP010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00047112 SAMN37820975-rid19919473.denovo.70, whole genome shotgun sequence	3345..3457																																																											
GCA_032934455.1_PDT001950261.1_genomic.fna	Salmonella_enterica	0.5205	98.613 KB	17	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJVQ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00047115 SAMN37820976-rid19922383.denovo.29, whole genome shotgun sequence	12523..12960	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJVQ010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00047115 SAMN37820976-rid19922383.guided.33, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJVQ010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00047115 SAMN37820976-rid19922383.denovo.69, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJVQ010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00047115 SAMN37820976-rid19922383.denovo.70, whole genome shotgun sequence	3345..3457																																																											
GCA_032934475.1_PDT001950260.1_genomic.fna	Salmonella_enterica	0.523	76.289 KB	18	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJVS010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00047122 SAMN37820977-rid19924963.denovo.11, whole genome shotgun sequence	86620..87057	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJVS010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00047122 SAMN37820977-rid19924963.guided.50, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJVS010000045.1	39534..40403	99.195	870	0						
GCA_032934495.1_PDT001950258.1_genomic.fna	Salmonella_enterica	0.5205	216.523 KB	7	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	Col(pHAD28),Col440I	aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQJVR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00047182 SAMN37820979-rid19926383.denovo.01, whole genome shotgun sequence	261218..261655	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQJVR010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00047182 SAMN37820979-rid19926383.guided.28, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJVR010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00047182 SAMN37820979-rid19926383.denovo.47, whole genome shotgun sequence	547..675	enterobacteriales	Col440I	90	110 / 114	DAQJVR010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00047182 SAMN37820979-rid19926383.denovo.42, whole genome shotgun sequence	3377..3486																																																											
GCA_032934515.1_PDT001950259.1_genomic.fna	Salmonella_enterica	0.5232	92.319 KB	15	aroC_14,dnaN_72,hemD_115,hisD_12,purE_6,sucA_19,thrA_15	4491	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_115	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJVT010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Litchfield isolate AUSMDU00047162 SAMN37820978-rid19922373.denovo.12, whole genome shotgun sequence	12403..12840	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJVT010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Litchfield isolate AUSMDU00047162 SAMN37820978-rid19922373.guided.39, whole genome shotgun sequence	30101..30538	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJVT010000002.1	131438..132307	99.655	870	0						
GCA_032934535.1_PDT001950256.1_genomic.fna	Salmonella_enterica	0.5223	171.34 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJVV010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00047402 SAMN37820981-rid19922363.denovo.21, whole genome shotgun sequence	76133..76570	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJVV010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00047402 SAMN37820981-rid19922363.guided.28, whole genome shotgun sequence	31487..31924	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJVV010000006.1	149895..150764	99.655	870	0						
GCA_032934555.1_PDT001950257.1_genomic.fna	Salmonella_enterica	0.5219	168.163 KB	8	aroC_14,dnaN_210,hemD_8,hisD_14,purE_38,sucA_19,thrA_102	1792	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	100	100	hemD_8	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJVU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00047369 SAMN37820980-rid19920903.denovo.01, whole genome shotgun sequence	471683..472120	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJVU010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00047369 SAMN37820980-rid19920903.guided.33, whole genome shotgun sequence	15637..16074	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJVU010000008.1	98350..99219	99.54	870	0						
GCA_032934575.1_PDT001950255.1_genomic.fna	Salmonella_enterica	0.5206	111.439 KB	14	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJVW010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00047403 SAMN37820982-rid19924953.denovo.13, whole genome shotgun sequence	12567..13004	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJVW010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00047403 SAMN37820982-rid19924953.guided.37, whole genome shotgun sequence	7392..7829	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJVW010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00047403 SAMN37820982-rid19924953.denovo.72, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJVW010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00047403 SAMN37820982-rid19924953.denovo.73, whole genome shotgun sequence	3345..3457																																																											
GCA_032934595.1_PDT001950254.1_genomic.fna	Salmonella_enterica	0.5214	96.95 KB	17	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJVX010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00047534 SAMN37820983-rid19922353.denovo.024, whole genome shotgun sequence	15466..15903	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJVX010000107.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00047534 SAMN37820983-rid19922353.guided.041, whole genome shotgun sequence	33601..34038	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJVX010000014.1	98363..99232	99.77	870	0						
GCA_032934615.1_PDT001950253.1_genomic.fna	Salmonella_enterica	0.5223	307.928 KB	6	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJVY010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00023117 SAMN37820273-rid19927473.denovo.03, whole genome shotgun sequence	169927..170364	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJVY010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00023117 SAMN37820273-rid19927473.guided.17, whole genome shotgun sequence	42396..42833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032934675.1_PDT001950250.1_genomic.fna	Salmonella_enterica	0.5226	93.076 KB	16	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJWB010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00047940 SAMN37820986-rid19924943.denovo.25, whole genome shotgun sequence	52275..52712	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJWB010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00047940 SAMN37820986-rid19924943.guided.43, whole genome shotgun sequence	33789..34226	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJWB010000003.1	149586..150455	99.655	870	0						
GCA_032934695.1_PDT001950249.1_genomic.fna	Salmonella_enterica	0.5215	167.627 KB	10	aroC_10,dnaN_71,hemD_43,hisD_12,purE_190,sucA_20,thrA_18	808	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	Col440I,ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_71	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_190	sucA	100	100	sucA_20	thrA	100	100	thrA_18	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJWC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00047984 SAMN37820987-rid19922343.denovo.01, whole genome shotgun sequence	379550..379987	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJWC010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00047984 SAMN37820987-rid19922343.guided.26, whole genome shotgun sequence	36713..37150	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col440I	94.55	110 / 114	DAQJWC010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00047984 SAMN37820987-rid19922343.denovo.49, whole genome shotgun sequence	1189..1298	enterobacteriales	ColRNAI	92.37	118 / 130	DAQJWC010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00047984 SAMN37820987-rid19922343.denovo.51, whole genome shotgun sequence	1833..1950																																																avrA	DAQJWC010000008.1	39597..40466	99.54	870	0						
GCA_032934715.1_PDT001950246.1_genomic.fna	Salmonella_enterica	0.5208	195.719 KB	9	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJWD010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00024644 SAMN37820326-rid19926363.denovo.03, whole genome shotgun sequence	159473..159910	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJWD010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00024644 SAMN37820326-rid19926363.guided.36, whole genome shotgun sequence	10149..10586	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJWD010000004.1	114928..115797	99.54	870	0						
GCA_032934735.1_PDT001950245.1_genomic.fna	Salmonella_enterica	0.5207	135.532 KB	11	aroC_115,dnaN_75,hemD_8,hisD_115,purE_2,sucA_116,thrA_110	314	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_115	dnaN	100	100	dnaN_75	hemD	100	100	hemD_8	hisD	100	100	hisD_115	purE	100	100	purE_2	sucA	100	100	sucA_116	thrA	100	100	thrA_110	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJWE010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00024660 SAMN37820327-rid19924933.denovo.02, whole genome shotgun sequence	124583..125020	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQJWE010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00024660 SAMN37820327-rid19924933.guided.27, whole genome shotgun sequence	16445..16882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJWE010000007.1	109993..110862	98.851	870	0						
GCA_032934755.1_PDT001950244.1_genomic.fna	Salmonella_enterica	0.5224	226.95 KB	7	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJWF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00024677 SAMN37820328-rid19922333.denovo.01, whole genome shotgun sequence	145223..145660	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJWF010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00024677 SAMN37820328-rid19922333.guided.26, whole genome shotgun sequence	19585..20022	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJWF010000005.1	108006..108875	99.655	870	0						
GCA_032934775.1_PDT001950243.1_genomic.fna	Salmonella_enterica	0.5202	234.08 KB	7	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJWG010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024682 SAMN37820329-rid19927453.denovo.10, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJWG010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024682 SAMN37820329-rid19927453.guided.28, whole genome shotgun sequence	9267..9704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJWG010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024682 SAMN37820329-rid19927453.denovo.42, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJWG010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024682 SAMN37820329-rid19927453.denovo.43, whole genome shotgun sequence	3345..3457																																																											
GCA_032934795.1_PDT001950241.1_genomic.fna	Salmonella_enterica	0.5223	167.156 KB	11	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113!,purE_113!,sucA_6,thrA_68	Unknown	-:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113!	purE	100	100	purE_113!	sucA	100	100	sucA_6	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJWI010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00024783 SAMN37820331-rid19927443.denovo.10, whole genome shotgun sequence	20857..21294	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJWI010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00024783 SAMN37820331-rid19927443.guided.39, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJWI010000008.1	105130..105999	99.195	870	0						
GCA_032934815.1_PDT001950242.1_genomic.fna	Salmonella_enterica	0.5202	136.107 KB	12	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJWH010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024773 SAMN37820330-rid19919453.denovo.10, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJWH010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024773 SAMN37820330-rid19919453.guided.36, whole genome shotgun sequence	34192..34629	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJWH010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024773 SAMN37820330-rid19919453.denovo.54, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJWH010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024773 SAMN37820330-rid19919453.denovo.56, whole genome shotgun sequence	3345..3457																																																											
GCA_032934855.1_PDT001950240.1_genomic.fna	Salmonella_enterica	0.5212	180.742 KB	8	aroC_4,dnaN_164,hemD_134,hisD_195,purE_8,sucA_105,thrA_22	2657	8:z10:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_4	dnaN	100	100	dnaN_164	hemD	100	100	hemD_134	hisD	100	100	hisD_195	purE	100	100	purE_8	sucA	100	100	sucA_105	thrA	100	100	thrA_22	8	z10	z6	Salmonella enterica subspecies enterica (subspecies I)	Molade or Wippra	The predicted serotypes share the same general formula: 8:z10:z6 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJWJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Molade isolate AUSMDU00024806 SAMN37820332-rid19924923.denovo.01, whole genome shotgun sequence	385398..385835	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJWJ010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Molade isolate AUSMDU00024806 SAMN37820332-rid19924923.guided.15, whole genome shotgun sequence	16437..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.74	114 / 114	DAQJWJ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Molade isolate AUSMDU00024806 SAMN37820332-rid19924923.denovo.49, whole genome shotgun sequence	1876..1989																																																						avrA	DAQJWJ010000008.1	39118..39987	99.195	870	0						
GCA_032934875.1_PDT001950237.1_genomic.fna	Salmonella_enterica	0.5205	197.785 KB	9	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	-:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	-	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJWM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00024832 SAMN37820334-rid19919443.denovo.01, whole genome shotgun sequence	12561..12998	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJWM010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00024832 SAMN37820334-rid19919443.guided.37, whole genome shotgun sequence	16429..16866	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQJWM010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00024832 SAMN37820334-rid19919443.denovo.04, whole genome shotgun sequence	151567..151990	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQJWM010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00024832 SAMN37820334-rid19919443.guided.36, whole genome shotgun sequence	17839..18262	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJWM010000008.1	150544..151413	99.31	870	0						
GCA_032934895.1_PDT001950239.1_genomic.fna	Salmonella_enterica	0.5202	124.324 KB	12	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJWK010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024829 SAMN37820333-rid19920883.denovo.10, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJWK010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024829 SAMN37820333-rid19920883.guided.25, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJWK010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024829 SAMN37820333-rid19920883.denovo.58, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJWK010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024829 SAMN37820333-rid19920883.denovo.59, whole genome shotgun sequence	3345..3457																																																											
GCA_032934915.1_PDT001950238.1_genomic.fna	Salmonella_enterica	0.5211	144.399 KB	11	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJWL010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00021578 SAMN37820208-rid19926353.denovo.04, whole genome shotgun sequence	51614..52051	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJWL010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00021578 SAMN37820208-rid19926353.guided.19, whole genome shotgun sequence	7343..7780	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032934935.1_PDT001950236.1_genomic.fna	Salmonella_enterica	0.5209	150.601 KB	12	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	16:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	16	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Orientalis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJWN010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00024857 SAMN37820335-rid19926343.denovo.15, whole genome shotgun sequence	52439..52876	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJWN010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00024857 SAMN37820335-rid19926343.guided.39, whole genome shotgun sequence	14267..14704	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQJWN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00024857 SAMN37820335-rid19926343.denovo.01, whole genome shotgun sequence	150172..150595	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQJWN010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00024857 SAMN37820335-rid19926343.guided.42, whole genome shotgun sequence	17839..18262	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJWN010000006.1	150557..151426	99.31	870	0						
GCA_032934955.1_PDT001950235.1_genomic.fna	Salmonella_enterica	0.522	192.804 KB	9	aroC_14,dnaN_210,hemD_8,hisD_14,purE_38,sucA_19,thrA_102	1792	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	100	100	hemD_8	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJWO010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00024858 SAMN37820336-rid19924103.denovo.07, whole genome shotgun sequence	177573..178010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJWO010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00024858 SAMN37820336-rid19924103.guided.28, whole genome shotgun sequence	42397..42834	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJWO010000009.1	98350..99219	99.54	870	0						
GCA_032934975.1_PDT001950233.1_genomic.fna	Salmonella_enterica	0.5215	204.965 KB	7	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113!,purE_113!,sucA_6,thrA_68	Unknown	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113!	purE	100	100	purE_113!	sucA	100	100	sucA_6	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJWQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00024907 SAMN37820338-rid19923493.denovo.01, whole genome shotgun sequence	727905..728342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJWQ010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00024907 SAMN37820338-rid19923493.guided.20, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJWQ010000003.1	39428..40297	99.195	870	0						
GCA_032934995.1_PDT001950232.1_genomic.fna	Salmonella_enterica	0.5221	355.164 KB	6	aroC_14,dnaN_210,hemD_8,hisD_14,purE_38,sucA_19,thrA_102	1792	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	100	100	hemD_8	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJWP010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00024939 SAMN37820339-rid19919433.denovo.08, whole genome shotgun sequence	145308..145745	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJWP010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00024939 SAMN37820339-rid19919433.guided.25, whole genome shotgun sequence	13015..13452	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJWP010000001.1	516066..516935	99.54	870	0						
GCA_032935015.1_PDT001950230.1_genomic.fna	Salmonella_enterica	0.5231	197.597 KB	8	aroC_397,dnaN_380,hemD_121,hisD_99,purE_411,sucA_9,thrA_406	1370	7:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_397	dnaN	100	100	dnaN_380	hemD	100	100	hemD_121	hisD	100	100	hisD_99	purE	100	100	purE_411	sucA	100	100	sucA_9	thrA	100	100	thrA_406	7	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Oslo		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJWR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oslo isolate AUSMDU00024981 SAMN37820341-rid19924913.denovo.01, whole genome shotgun sequence	172862..173299	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJWR010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oslo isolate AUSMDU00024981 SAMN37820341-rid19924913.guided.35, whole genome shotgun sequence	2611..3048	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJWR010000010.1	121673..122542	99.77	870	0						
GCA_032935035.1_PDT001950231.1_genomic.fna	Salmonella_enterica	0.5202	237.988 KB	7	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJWS010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00024974 SAMN37820340-rid19923483.denovo.05, whole genome shotgun sequence	152081..152518	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJWS010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00024974 SAMN37820340-rid19923483.guided.31, whole genome shotgun sequence	9864..10301	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQJWS010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00024974 SAMN37820340-rid19923483.denovo.45, whole genome shotgun sequence	2127..2239	enterobacteriales	Col440I	94.74	114 / 114	DAQJWS010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00024974 SAMN37820340-rid19923483.denovo.47, whole genome shotgun sequence	787..900																																																avrA	DAQJWS010000001.1	145252..146121	98.966	870	0						
GCA_032935055.1_PDT001950229.1_genomic.fna	Salmonella_enterica	0.5218	234.472 KB	7	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJWT010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024987 SAMN37820342-rid19920873.denovo.18, whole genome shotgun sequence	52339..52776	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJWT010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024987 SAMN37820342-rid19920873.guided.34, whole genome shotgun sequence	10146..10583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJWT010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024987 SAMN37820342-rid19920873.denovo.42, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJWT010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00024987 SAMN37820342-rid19920873.denovo.43, whole genome shotgun sequence	3345..3457																																																											
GCA_032935075.1_PDT001950227.1_genomic.fna	Salmonella_enterica	0.5187	205.936 KB	7	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQJWV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00021588 SAMN37820209-rid19919423.denovo.01, whole genome shotgun sequence	471709..472146	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQJWV010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00021588 SAMN37820209-rid19919423.guided.22, whole genome shotgun sequence	9823..10260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJWV010000008.1	114571..115440	99.425	870	0						
GCA_032935095.1_PDT001950228.1_genomic.fna	Salmonella_enterica	0.5207	315.421 KB	6	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJWU010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00024988 SAMN37820343-rid19926333.denovo.09, whole genome shotgun sequence	159585..160022	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJWU010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00024988 SAMN37820343-rid19926333.guided.22, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJWU010000007.1	140191..141060	99.54	870	0						
GCA_032935115.1_PDT001950226.1_genomic.fna	Salmonella_enterica	0.5235	164.766 KB	9	aroC_397,dnaN_380,hemD_121,hisD_99,purE_411,sucA_9,thrA_406	1370	7:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_397	dnaN	100	100	dnaN_380	hemD	100	100	hemD_121	hisD	100	100	hisD_99	purE	100	100	purE_411	sucA	100	100	sucA_9	thrA	100	100	thrA_406	7	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Oslo		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJWW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oslo isolate AUSMDU00024991 SAMN37820344-rid19926323.denovo.01, whole genome shotgun sequence	385998..386435	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJWW010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oslo isolate AUSMDU00024991 SAMN37820344-rid19926323.guided.37, whole genome shotgun sequence	14155..14592	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJWW010000007.1	138498..139367	99.77	870	0						
GCA_032935135.1_PDT001950225.1_genomic.fna	Salmonella_enterica	0.5226	186.137 KB	6	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJWX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00025111 SAMN37820345-rid19924093.denovo.01, whole genome shotgun sequence	265827..266264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJWX010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00025111 SAMN37820345-rid19924093.guided.32, whole genome shotgun sequence	7577..8014	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJWX010000008.1	94223..95092	99.425	870	0						
GCA_032935155.1_PDT001950221.1_genomic.fna	Salmonella_enterica	0.5187	207.527 KB	7	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJXA010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00025198 SAMN37820349-rid19923463.denovo.02, whole genome shotgun sequence	145223..145660	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJXA010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00025198 SAMN37820349-rid19923463.guided.27, whole genome shotgun sequence	33635..34072	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJXA010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00025198 SAMN37820349-rid19923463.denovo.08, whole genome shotgun sequence	28294..28620	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJXA010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00025198 SAMN37820349-rid19923463.denovo.08, whole genome shotgun sequence	12801..13430																																																avrA	DAQJXA010000011.1	60698..61567	99.77	870	0						
GCA_032935175.1_PDT001950220.1_genomic.fna	Salmonella_enterica	0.5216	151.416 KB	11	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJWZ010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00025229 SAMN37820350-rid19924903.denovo.08, whole genome shotgun sequence	20867..21304	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJWZ010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00025229 SAMN37820350-rid19924903.guided.41, whole genome shotgun sequence	1602..2039	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJWZ010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00025229 SAMN37820350-rid19924903.denovo.51, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJWZ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00025229 SAMN37820350-rid19924903.denovo.52, whole genome shotgun sequence	3345..3457																																																											
GCA_032935195.1_PDT001950223.1_genomic.fna	Salmonella_enterica	0.5198	330.66 KB	5	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJWY010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00025123 SAMN37820347-rid19923473.denovo.11, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJWY010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00025123 SAMN37820347-rid19923473.guided.15, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJWY010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00025123 SAMN37820347-rid19923473.denovo.34, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJWY010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00025123 SAMN37820347-rid19923473.denovo.35, whole genome shotgun sequence	3345..3457																																																											
GCA_032935215.1_PDT001950218.1_genomic.fna	Salmonella_enterica	0.5224	141.929 KB	11	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJXB010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00025287 SAMN37820352-rid19924893.denovo.05, whole genome shotgun sequence	83165..83602	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJXB010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00025287 SAMN37820352-rid19924893.guided.40, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJXB010000004.1	95271..96140	99.425	870	0						
GCA_032935235.1_PDT001950216.1_genomic.fna	Salmonella_enterica	0.5223	113.289 KB	9	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJXD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00028372 SAMN37820440-rid19926313.denovo.01, whole genome shotgun sequence	223730..224167	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJXD010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00028372 SAMN37820440-rid19926313.guided.28, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJXD010000022.1	39591..40460	99.77	870	0						
GCA_032935255.1_PDT001950217.1_genomic.fna	Salmonella_enterica	0.5225	140.581 KB	10	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJXC010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00025456 SAMN37820353-rid19919403.denovo.02, whole genome shotgun sequence	223441..223878	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJXC010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00025456 SAMN37820353-rid19919403.guided.36, whole genome shotgun sequence	26713..27150	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJXC010000014.1	39483..40352	99.77	870	0						
GCA_032935275.1_PDT001950213.1_genomic.fna	Salmonella_enterica	0.522	159.671 KB	9	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJXF010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00028408 SAMN37820443-rid19924073.denovo.03, whole genome shotgun sequence	137416..137853	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJXF010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00028408 SAMN37820443-rid19924073.guided.45, whole genome shotgun sequence	11289..11726	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJXF010000006.1	148884..149750	99.08	870	0						
GCA_032935295.1_PDT001950214.1_genomic.fna	Salmonella_enterica	0.5214	132.884 KB	12	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113!,purE_113!,sucA_6,thrA_68	Unknown	-:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113!	purE	100	100	purE_113!	sucA	100	100	sucA_6	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJXE010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00028375 SAMN37820442-rid19922303.denovo.02, whole genome shotgun sequence	148904..149341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJXE010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00028375 SAMN37820442-rid19922303.guided.25, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJXE010000003.1	101286..102155	99.195	870	0						
GCA_032935315.1_PDT001950210.1_genomic.fna	Salmonella_enterica	0.5214	107.855 KB	11	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJXH010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00028428 SAMN37820445-rid19924883.denovo.03, whole genome shotgun sequence	117573..118010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJXH010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00028428 SAMN37820445-rid19924883.guided.35, whole genome shotgun sequence	26707..27144	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJXH010000008.1	166450..167319	99.77	870	0						
GCA_032935335.1_PDT001950209.1_genomic.fna	Salmonella_enterica	0.5221	124.367 KB	11	aroC_117,dnaN_14,hemD_23,hisD_127,purE_6,sucA_7,thrA_22	462	-:k:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_117	dnaN	100	100	dnaN_14	hemD	100	100	hemD_23	hisD	100	100	hisD_127	purE	100	100	purE_6	sucA	100	100	sucA_7	thrA	100	100	thrA_22	-	k	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJXG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00028439 SAMN37820446-rid19920853.denovo.01, whole genome shotgun sequence	573076..573513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJXG010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00028439 SAMN37820446-rid19920853.guided.58, whole genome shotgun sequence	3522..3959	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	DAQJXG010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00028439 SAMN37820446-rid19920853.denovo.39, whole genome shotgun sequence	29626..29885																																																						avrA	DAQJXG010000006.1	121622..122491	99.77	870	0						
GCA_032935355.1_PDT001950205.1_genomic.fna	Salmonella_enterica	0.5185	189.924 KB	10	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJXI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00028602 SAMN37820450-rid19924063.denovo.01, whole genome shotgun sequence	223466..223903	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJXI010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00028602 SAMN37820450-rid19924063.guided.30, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQJXI010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00028602 SAMN37820450-rid19924063.denovo.11, whole genome shotgun sequence	89249..89575	enterobacteriales	IncHI2A	99.84	630 / 630	DAQJXI010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00028602 SAMN37820450-rid19924063.denovo.11, whole genome shotgun sequence	104439..105068																																																avrA	DAQJXI010000004.1	108202..109071	99.77	870	0						
GCA_032935375.1_PDT001950204.1_genomic.fna	Salmonella_enterica	0.5218	234.21 KB	7	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJXJ010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00028793 SAMN37820451-rid19922293.denovo.05, whole genome shotgun sequence	62372..62809	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJXJ010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00028793 SAMN37820451-rid19922293.guided.34, whole genome shotgun sequence	7409..7846	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJXJ010000003.1	150332..151198	99.08	870	0						
GCA_032935395.1_PDT001950203.1_genomic.fna	Salmonella_enterica	0.5229	88.416 KB	18	aroC_5,dnaN_14,hemD_6,hisD_12,purE_5,sucA_14,thrA_58	166	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_14	thrA	100	100	thrA_58	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJXK010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00028817 SAMN37820452-rid19924053.denovo.023, whole genome shotgun sequence	20930..21367	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQJXK010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00028817 SAMN37820452-rid19924053.guided.041, whole genome shotgun sequence	31369..31806	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	96.86	191 / 193	DAQJXK010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00028817 SAMN37820452-rid19924053.denovo.090, whole genome shotgun sequence	1524..1714																																																						avrA	DAQJXK010000009.1	114528..115397	99.655	870	0						
GCA_032935415.1_PDT001950202.1_genomic.fna	Salmonella_enterica	0.5202	95.15 KB	18	aroC_13,dnaN_10,hemD_25,hisD_113,purE_114,sucA_71,thrA_4	714	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	p0111	aroC	100	100	aroC_13	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_71	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJXL010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00028823 SAMN37820453-rid19920843.denovo.026, whole genome shotgun sequence	52244..52681	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJXL010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00028823 SAMN37820453-rid19920843.guided.058, whole genome shotgun sequence	13986..14423	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	p0111	98.53	885 / 885	DAQJXL010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00028823 SAMN37820453-rid19920843.denovo.019, whole genome shotgun sequence	66235..67119																																																						avrA	DAQJXL010000001.1	141367..142236	99.54	870	0						
GCA_032935435.1_PDT001950201.1_genomic.fna	Salmonella_enterica	0.5205	110.703 KB	13	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	2	Col156,Col440I,Col440I	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJXM010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021888 SAMN37820220-rid19923443.denovo.011, whole genome shotgun sequence	121804..122241	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJXM010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021888 SAMN37820220-rid19923443.guided.042, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col156	95.45	154 / 154	DAQJXM010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021888 SAMN37820220-rid19923443.denovo.075, whole genome shotgun sequence	483..636	enterobacteriales	Col440I	96.49	114 / 114	DAQJXM010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021888 SAMN37820220-rid19923443.denovo.080, whole genome shotgun sequence	334..447		enterobacteriales	Col440I	93.69	111 / 114	DAQJXM010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Schwarzengrund isolate AUSMDU00021888 SAMN37820220-rid19923443.denovo.084, whole genome shotgun sequence	1485..1595																																									avrA	DAQJXM010000005.1	99181..100050	98.966	870	0						
GCA_032935455.1_PDT001950197.1_genomic.fna	Salmonella_enterica	0.5222	169.895 KB	8	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJXO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00028887 SAMN37820457-rid19919373.denovo.01, whole genome shotgun sequence	250124..250561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJXO010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00028887 SAMN37820457-rid19919373.guided.27, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJXO010000013.1	126181..127047	99.08	870	0						
GCA_032935475.1_PDT001950198.1_genomic.fna	Salmonella_enterica	0.5215	282.82 KB	8	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJXN010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00028874 SAMN37820456-rid19924853.denovo.03, whole genome shotgun sequence	83720..84157	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJXN010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00028874 SAMN37820456-rid19924853.guided.24, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJXN010000009.1	148942..149807	98.966	870	0						
GCA_032935495.1_PDT001950196.1_genomic.fna	Salmonella_enterica	0.5223	165.755 KB	9	aroC_5,dnaN_14,hemD_6,hisD_12,purE_5,sucA_14,thrA_58	166	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_14	thrA	100	100	thrA_58	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQJXP010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00028903 SAMN37820458-rid19927433.denovo.07, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQJXP010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00028903 SAMN37820458-rid19927433.guided.29, whole genome shotgun sequence	15657..16094	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJXP010000014.1	93879..94748	99.655	870	0						
GCA_032935535.1_PDT001950194.1_genomic.fna	Salmonella_enterica	0.5212	299.336 KB	6	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJXR010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00028922 SAMN37820460-rid19922273.denovo.03, whole genome shotgun sequence	112533..112970	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJXR010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00028922 SAMN37820460-rid19922273.guided.15, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032935555.1_PDT001950193.1_genomic.fna	Salmonella_enterica	0.5214	232.622 KB	7	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJXS010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00028947 SAMN37820461-rid19924843.denovo.03, whole genome shotgun sequence	137034..137471	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJXS010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00028947 SAMN37820461-rid19924843.guided.32, whole genome shotgun sequence	14335..14772	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJXS010000012.1	39587..40453	99.08	870	0						
GCA_032935575.1_PDT001950192.1_genomic.fna	Salmonella_enterica	0.5222	176.119 KB	10	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJXT010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00028957 SAMN37820462-rid19920833.denovo.03, whole genome shotgun sequence	83155..83592	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJXT010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00028957 SAMN37820462-rid19920833.guided.26, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJXT010000010.1	95271..96140	99.425	870	0						
GCA_032935595.1_PDT001950177.1_genomic.fna	Salmonella_enterica	0.5212	125.105 KB	13	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	-:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	-	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJYF010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00032261 SAMN37820562-rid19919343.denovo.13, whole genome shotgun sequence	52440..52877	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJYF010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00032261 SAMN37820562-rid19919343.guided.45, whole genome shotgun sequence	16429..16866	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQJYF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00032261 SAMN37820562-rid19919343.denovo.01, whole genome shotgun sequence	151399..151822	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQJYF010000082.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00032261 SAMN37820562-rid19919343.guided.60, whole genome shotgun sequence	4873..5296	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJYF010000008.1	125040..125909	99.31	870	0						
GCA_032935615.1_PDT001950176.1_genomic.fna	Salmonella_enterica	0.5213	211.093 KB	8	aroC_16,dnaN_16,hemD_26,hisD_18,purE_8,sucA_12,thrA_18	51	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_26	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJYG010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00032264 SAMN37820563-rid19927423.denovo.16, whole genome shotgun sequence	82475..82912	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJYG010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00032264 SAMN37820563-rid19927423.guided.37, whole genome shotgun sequence	14799..15236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJYG010000012.1	39483..40349	99.08	870	0						
GCA_032935655.1_PDT001950190.1_genomic.fna	Salmonella_enterica	0.5219	121.681 KB	11	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJXV010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00021901 SAMN37820221-rid19920823.denovo.24, whole genome shotgun sequence	13639..14076	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJXV010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00021901 SAMN37820221-rid19920823.guided.47, whole genome shotgun sequence	13659..14096	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJXV010000006.1	121031..121897	99.08	870	0						
GCA_032935675.1_PDT001950186.1_genomic.fna	Salmonella_enterica	0.5213	142.832 KB	11	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncQ1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJXY010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00029054 SAMN37820467-rid19926283.denovo.06, whole genome shotgun sequence	28699..29136	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJXY010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00029054 SAMN37820467-rid19926283.guided.26, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncQ1	100	796 / 796	DAQJXY010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00029054 SAMN37820467-rid19926283.denovo.45, whole genome shotgun sequence	292..1087																																																						avrA	DAQJXY010000013.1	39484..40350	99.08	870	0						
GCA_032935695.1_PDT001950187.1_genomic.fna	Salmonella_enterica	0.522	182.245 KB	9	aroC_16,dnaN_487,hemD_20,hisD_18,purE_8,sucA_447,thrA_18	2299	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_487	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_447	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJXW010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00029030 SAMN37820466-rid19919363.denovo.04, whole genome shotgun sequence	83728..84165	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJXW010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00029030 SAMN37820466-rid19919363.guided.36, whole genome shotgun sequence	14207..14644	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJXW010000022.1	39483..40349	98.966	870	0						
GCA_032935715.1_PDT001950189.1_genomic.fna	Salmonella_enterica	0.5206	134.567 KB	11	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	-:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	-	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJXX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029013 SAMN37820464-rid19920813.denovo.01, whole genome shotgun sequence	15521..15958	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJXX010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029013 SAMN37820464-rid19920813.guided.27, whole genome shotgun sequence	16429..16866	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQJXX010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029013 SAMN37820464-rid19920813.denovo.08, whole genome shotgun sequence	24567..24990	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQJXX010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029013 SAMN37820464-rid19920813.guided.44, whole genome shotgun sequence	17839..18262	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJXX010000005.1	150386..151255	99.31	870	0						
GCA_032935735.1_PDT001950191.1_genomic.fna	Salmonella_enterica	0.5223	173.799 KB	8	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJXU010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00028993 SAMN37820463-rid19926293.denovo.02, whole genome shotgun sequence	223539..223976	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJXU010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00028993 SAMN37820463-rid19926293.guided.24, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJXU010000029.1	39484..40350	99.08	870	0						
GCA_032935755.1_PDT001950185.1_genomic.fna	Salmonella_enterica	0.5206	131.221 KB	12	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	-:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	-	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJXZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029065 SAMN37820468-rid19919353.denovo.01, whole genome shotgun sequence	72228..72665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJXZ010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029065 SAMN37820468-rid19919353.guided.46, whole genome shotgun sequence	16429..16866	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQJXZ010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029065 SAMN37820468-rid19919353.denovo.10, whole genome shotgun sequence	151363..151786	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQJXZ010000095.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029065 SAMN37820468-rid19919353.guided.66, whole genome shotgun sequence	1367..1790	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pN55391)	98.75	560 / 560	DAQJXZ010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029065 SAMN37820468-rid19919353.denovo.57, whole genome shotgun sequence	9123..9682																																																						avrA	DAQJXZ010000005.1	150456..151325	99.31	870	0						
GCA_032935775.1_PDT001950183.1_genomic.fna	Salmonella_enterica	0.5214	181.19 KB	9	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJYA010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00032150 SAMN37820556-rid19924033.denovo.14, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJYA010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00032150 SAMN37820556-rid19924033.guided.22, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJYA010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00032150 SAMN37820556-rid19924033.denovo.46, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJYA010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00032150 SAMN37820556-rid19924033.denovo.47, whole genome shotgun sequence	3345..3457																																																											
GCA_032935795.1_PDT001950182.1_genomic.fna	Salmonella_enterica	0.5221	224.42 KB	7	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJYB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00032161 SAMN37820557-rid19920803.denovo.01, whole genome shotgun sequence	159597..160034	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJYB010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00032161 SAMN37820557-rid19920803.guided.28, whole genome shotgun sequence	15557..15994	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJYB010000008.1	123319..124188	99.77	870	0						
GCA_032935815.1_PDT001950181.1_genomic.fna	Salmonella_enterica	0.522	160.474 KB	10	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJYC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00032162 SAMN37820558-rid19926273.denovo.01, whole genome shotgun sequence	479817..480254	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJYC010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00032162 SAMN37820558-rid19926273.guided.23, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJYC010000006.1	107440..108309	99.195	870	0						
GCA_032935835.1_PDT001950179.1_genomic.fna	Salmonella_enterica	0.5222	177.958 KB	7	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColpVC	aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQJYD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00032206 SAMN37820560-rid19922253.denovo.01, whole genome shotgun sequence	142835..143272	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQJYD010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00032206 SAMN37820560-rid19922253.guided.41, whole genome shotgun sequence	8904..9341	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	99.48	193 / 193	DAQJYD010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00032206 SAMN37820560-rid19922253.denovo.48, whole genome shotgun sequence	1380..1572																																																																	
GCA_032935855.1_PDT001950175.1_genomic.fna	Salmonella_enterica	0.5211	454.755 KB	4	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJYH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00022095 SAMN37820231-rid19919333.denovo.01, whole genome shotgun sequence	150023..150460	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJYH010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00022095 SAMN37820231-rid19919333.guided.28, whole genome shotgun sequence	12885..13322	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJYH010000002.1	665846..666715	99.77	870	0						
GCA_032935875.1_PDT001950178.1_genomic.fna	Salmonella_enterica	0.5219	188.119 KB	9	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJYE010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00032208 SAMN37820561-rid19926263.denovo.05, whole genome shotgun sequence	145332..145769	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJYE010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00032208 SAMN37820561-rid19926263.guided.16, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJYE010000008.1	124244..125113	99.77	870	0						
GCA_032935895.1_PDT001950174.1_genomic.fna	Salmonella_enterica	0.5218	170.125 KB	8	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJYI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00032276 SAMN37820564-rid19922243.denovo.01, whole genome shotgun sequence	262270..262707	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJYI010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00032276 SAMN37820564-rid19922243.guided.27, whole genome shotgun sequence	33580..34017	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJYI010000016.1	39591..40457	99.08	870	0						
GCA_032935915.1_PDT001950172.1_genomic.fna	Salmonella_enterica	0.5222	265.631 KB	6	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJYK010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00032400 SAMN37820566-rid19920783.denovo.02, whole genome shotgun sequence	223628..224065	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJYK010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00032400 SAMN37820566-rid19920783.guided.23, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJYK010000010.1	39483..40352	99.77	870	0						
GCA_032935935.1_PDT001950173.1_genomic.fna	Salmonella_enterica	0.5201	188.711 KB	8	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJYJ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00032365 SAMN37820565-rid19924823.denovo.06, whole genome shotgun sequence	37891..38328	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJYJ010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00032365 SAMN37820565-rid19924823.guided.34, whole genome shotgun sequence	16674..17111	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJYJ010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00032365 SAMN37820565-rid19924823.denovo.42, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJYJ010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00032365 SAMN37820565-rid19924823.denovo.43, whole genome shotgun sequence	3345..3457																																																											
GCA_032935955.1_PDT001950171.1_genomic.fna	Salmonella_enterica	0.5226	132.755 KB	13	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJYL010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00032405 SAMN37820567-rid19926253.denovo.06, whole genome shotgun sequence	20874..21311	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJYL010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00032405 SAMN37820567-rid19926253.guided.41, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJYL010000009.1	102933..103802	99.195	870	0						
GCA_032935975.1_PDT001950169.1_genomic.fna	Salmonella_enterica	0.5214	68.763 KB	21	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJYN010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00032457 SAMN37820569-rid19922233.denovo.008, whole genome shotgun sequence	105645..106082	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJYN010000145.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00032457 SAMN37820569-rid19922233.guided.077, whole genome shotgun sequence	14858..15295	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQJYN010000116.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00032457 SAMN37820569-rid19922233.denovo.119, whole genome shotgun sequence	829..959	enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJYN010000117.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00032457 SAMN37820569-rid19922233.denovo.120, whole genome shotgun sequence	967..1095		enterobacteriales	IncHI1A	99.76	420 / 420	DAQJYN010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00032457 SAMN37820569-rid19922233.denovo.040, whole genome shotgun sequence	31819..32238		enterobacteriales	IncHI1B(R27)	100	540 / 540	DAQJYN010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00032457 SAMN37820569-rid19922233.denovo.040, whole genome shotgun sequence	14442..14981	R27																																	avrA	DAQJYN010000011.1	102653..103522	99.195	870	0						
GCA_032935995.1_PDT001950170.1_genomic.fna	Salmonella_enterica	0.5227	61.737 KB	25	aroC_22,dnaN_104,hemD_25,hisD_113,purE_12,sucA_107,thrA_4	2174	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_25	hisD	100	100	hisD_113	purE	100	100	purE_12	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAQJYM010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00032454 SAMN37820568-rid19920773.denovo.056, whole genome shotgun sequence	12516..12953	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAQJYM010000163.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00032454 SAMN37820568-rid19920773.guided.077, whole genome shotgun sequence	2537..2974	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJYM010000001.1	150114..150983	98.966	870	0						
GCA_032936015.1_PDT001950168.1_genomic.fna	Salmonella_enterica	0.5212	108.06 KB	14	aroC_41,dnaN_13,hemD_10,hisD_12,purE_5,sucA_19,thrA_12	3211	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156,Col156	aroC	100	100	aroC_41	dnaN	100	100	dnaN_13	hemD	100	100	hemD_10	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJYO010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00032482 SAMN37820570-rid19924813.denovo.20, whole genome shotgun sequence	38047..38484	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJYO010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00032482 SAMN37820570-rid19924813.guided.35, whole genome shotgun sequence	44304..44741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	DAQJYO010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00032482 SAMN37820570-rid19924813.denovo.68, whole genome shotgun sequence	967..1118	enterobacteriales	Col156	96.1	154 / 154	DAQJYO010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00032482 SAMN37820570-rid19924813.denovo.69, whole genome shotgun sequence	483..636																																																avrA	DAQJYO010000005.1	116380..117249	99.77	870	0						
GCA_032936035.1_PDT001950166.1_genomic.fna	Salmonella_enterica	0.5221	134.278 KB	12	aroC_14,dnaN_210,hemD_8,hisD_14,purE_38,sucA_19,thrA_102	1792	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	100	100	hemD_8	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQJYQ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00032529 SAMN37820572-rid19927413.denovo.02, whole genome shotgun sequence	145361..145798	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQJYQ010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00032529 SAMN37820572-rid19927413.guided.27, whole genome shotgun sequence	42397..42834	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJYQ010000014.1	95175..96044	99.54	870	0						
GCA_032936055.1_PDT001950167.1_genomic.fna	Salmonella_enterica	0.5213	96.524 KB	14	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_430,thrA_8	1939	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_430	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJYP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00032519 SAMN37820571-rid19919323.denovo.01, whole genome shotgun sequence	51567..52004	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJYP010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00032519 SAMN37820571-rid19919323.guided.44, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	ColRNAI	90.08	131 / 130	DAQJYP010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00032519 SAMN37820571-rid19919323.denovo.70, whole genome shotgun sequence	3981..4111																																																																	
GCA_032936075.1_PDT001950165.1_genomic.fna	Salmonella_enterica	0.5225	197.632 KB	9	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJYR010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00032531 SAMN37820573-rid19919313.denovo.04, whole genome shotgun sequence	117578..118015	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJYR010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00032531 SAMN37820573-rid19919313.guided.35, whole genome shotgun sequence	15495..15932	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJYR010000030.1	39483..40352	99.77	870	0						
GCA_032936095.1_PDT001950164.1_genomic.fna	Salmonella_enterica	0.5212	208.206 KB	8	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJYS010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00022112 SAMN37820232-rid19922223.denovo.08, whole genome shotgun sequence	62448..62885	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJYS010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00022112 SAMN37820232-rid19922223.guided.22, whole genome shotgun sequence	42448..42885	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJYS010000006.1	148731..149600	99.77	870	0						
GCA_032936115.1_PDT001950162.1_genomic.fna	Salmonella_enterica	0.5221	134.019 KB	11	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJYT010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00032545 SAMN37820575-rid19919303.denovo.03, whole genome shotgun sequence	13074..13511	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJYT010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00032545 SAMN37820575-rid19919303.guided.48, whole genome shotgun sequence	4209..4646	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJYT010000036.1	39583..40449	98.966	870	0						
GCA_032936135.1_PDT001950160.1_genomic.fna	Salmonella_enterica	0.5197	142.562 KB	11	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440I,Col440I	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJYV010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00032723 SAMN37820577-rid19919293.denovo.04, whole genome shotgun sequence	154773..155210	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJYV010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00032723 SAMN37820577-rid19919293.guided.20, whole genome shotgun sequence	14124..14561	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQJYV010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00032723 SAMN37820577-rid19919293.denovo.60, whole genome shotgun sequence	1480..1610	enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJYV010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00032723 SAMN37820577-rid19919293.denovo.64, whole genome shotgun sequence	1475..1603		enterobacteriales	Col440I	90.27	113 / 114	DAQJYV010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00032723 SAMN37820577-rid19919293.denovo.63, whole genome shotgun sequence	465..577		enterobacteriales	Col440I	94.74	114 / 114	DAQJYV010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00032723 SAMN37820577-rid19919293.denovo.65, whole genome shotgun sequence	1355..1468																																		avrA	DAQJYV010000007.1	145693..146562	98.966	870	0						
GCA_032936145.1_PDT001950161.1_genomic.fna	Salmonella_enterica	0.5205	97.357 KB	17	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJYU010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00032554 SAMN37820576-rid19926243.denovo.28, whole genome shotgun sequence	52315..52752	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJYU010000099.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00032554 SAMN37820576-rid19926243.guided.44, whole genome shotgun sequence	32328..32765	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJYU010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00032554 SAMN37820576-rid19926243.denovo.80, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJYU010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00032554 SAMN37820576-rid19926243.denovo.82, whole genome shotgun sequence	3345..3457																																																											
GCA_032936175.1_PDT001950158.1_genomic.fna	Salmonella_enterica	0.5226	132.294 KB	13	aroC_37,dnaN_15,hemD_535,hisD_12,purE_6,sucA_2,thrA_34	3364	-:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_37	dnaN	100	100	dnaN_15	hemD	100	100	hemD_535	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_2	thrA	100	100	thrA_34	-	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:a:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJYW010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oslo isolate AUSMDU00032744 SAMN37820579-rid19924023.denovo.05, whole genome shotgun sequence	137390..137827	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJYW010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oslo isolate AUSMDU00032744 SAMN37820579-rid19924023.guided.20, whole genome shotgun sequence	44295..44732	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJYW010000006.1	124142..125011	99.655	870	0						
GCA_032936195.1_PDT001950157.1_genomic.fna	Salmonella_enterica	0.5221	234.579 KB	6	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJYX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00032827 SAMN37820580-rid19922203.denovo.01, whole genome shotgun sequence	243729..244166	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJYX010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00032827 SAMN37820580-rid19922203.guided.31, whole genome shotgun sequence	14195..14632	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJYX010000009.1	151586..152452	98.966	870	0						
GCA_032936215.1_PDT001950156.1_genomic.fna	Salmonella_enterica	0.521	150.062 KB	9	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJYY010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00032854 SAMN37820581-rid19923433.denovo.19, whole genome shotgun sequence	52291..52728	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJYY010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00032854 SAMN37820581-rid19923433.guided.21, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJYY010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00032854 SAMN37820581-rid19923433.denovo.55, whole genome shotgun sequence	1380..1572																																																																	
GCA_032936235.1_PDT001950155.1_genomic.fna	Salmonella_enterica	0.5226	154.927 KB	11	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJYZ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00032862 SAMN37820582-rid19919283.denovo.02, whole genome shotgun sequence	134021..134458	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJYZ010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00032862 SAMN37820582-rid19919283.guided.31, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJYZ010000015.1	2301..3171	99.656	871	0						
GCA_032936255.1_PDT001950154.1_genomic.fna	Salmonella_enterica	0.5223	132.585 KB	10	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJZA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00033775 SAMN37820583-rid19920763.denovo.01, whole genome shotgun sequence	259759..260196	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJZA010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00033775 SAMN37820583-rid19920763.guided.36, whole genome shotgun sequence	14367..14804	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJZA010000002.1	95271..96140	99.425	870	0						
GCA_032936275.1_PDT001950153.1_genomic.fna	Salmonella_enterica	0.5216	477.237 KB	4	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	3	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,fosA4,fosA4	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJZB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022139 SAMN37820233-rid19924793.denovo.01, whole genome shotgun sequence	623408..623845	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJZB010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022139 SAMN37820233-rid19924793.guided.20, whole genome shotgun sequence	7302..7739	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQJZB010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022139 SAMN37820233-rid19924793.denovo.26, whole genome shotgun sequence	408..1268	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQJZB010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022139 SAMN37820233-rid19924793.guided.25, whole genome shotgun sequence	965..1825	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	fosA4	100	417/417	DAQJZB010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022139 SAMN37820233-rid19924793.denovo.28, whole genome shotgun sequence	322..738	Fosfomycin	AB908992	fosA4	100	417/417	DAQJZB010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022139 SAMN37820233-rid19924793.guided.27, whole genome shotgun sequence	363..779	Fosfomycin	AB908992																																																																																																																																																																																																																																																																																																																																																																																																																														gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	DAQJZB010000003.1	144235..145104	99.31	870	0						
GCA_032936295.1_PDT001950152.1_genomic.fna	Salmonella_enterica	0.5215	115.602 KB	13	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJZC010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00037176 SAMN37820671-rid19920753.denovo.16, whole genome shotgun sequence	15424..15861	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJZC010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00037176 SAMN37820671-rid19920753.guided.25, whole genome shotgun sequence	15469..15906	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJZC010000006.1	102342..103211	99.54	870	0						
GCA_032936315.1_PDT001950151.1_genomic.fna	Salmonella_enterica	0.5216	291.102 KB	5	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJZE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00037261 SAMN37820672-rid19926233.denovo.01, whole genome shotgun sequence	420811..421248	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJZE010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00037261 SAMN37820672-rid19926233.guided.16, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJZE010000004.1	112495..113361	99.08	870	0						
GCA_032936335.1_PDT001950150.1_genomic.fna	Salmonella_enterica	0.5219	169.859 KB	9	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQJZD010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00037265 SAMN37820673-rid19919273.denovo.08, whole genome shotgun sequence	12526..12963	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQJZD010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Javiana isolate AUSMDU00037265 SAMN37820673-rid19919273.guided.29, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJZD010000009.1	102471..103340	99.54	870	0						
GCA_032936375.1_PDT001950148.1_genomic.fna	Salmonella_enterica	0.5214	153.736 KB	9	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJZG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00037382 SAMN37820674-rid19924013.denovo.01, whole genome shotgun sequence	262827..263264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJZG010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00037382 SAMN37820674-rid19924013.guided.19, whole genome shotgun sequence	15833..16270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJZG010000003.1	106089..106955	99.08	870	0						
GCA_032936395.1_PDT001950149.1_genomic.fna	Salmonella_enterica	0.52	158.269 KB	10	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJZF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00022345 SAMN37820242-rid19922193.denovo.01, whole genome shotgun sequence	52417..52854	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJZF010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00022345 SAMN37820242-rid19922193.guided.25, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	DAQJZF010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00022345 SAMN37820242-rid19922193.denovo.60, whole genome shotgun sequence	2127..2239	enterobacteriales	Col440I	94.74	114 / 114	DAQJZF010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00022345 SAMN37820242-rid19922193.denovo.63, whole genome shotgun sequence	787..900																																																avrA	DAQJZF010000004.1	145551..146420	98.966	870	0						
GCA_032936415.1_PDT001950146.1_genomic.fna	Salmonella_enterica	0.5205	216.18 KB	8	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJZI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00037405 SAMN37820676-rid19923423.denovo.01, whole genome shotgun sequence	84772..85209	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJZI010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00037405 SAMN37820676-rid19923423.guided.30, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQJZI010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00037405 SAMN37820676-rid19923423.denovo.26, whole genome shotgun sequence	22483..22624																																																						avrA	DAQJZI010000010.1	78608..79477	99.54	870	0						
GCA_032936435.1_PDT001950145.1_genomic.fna	Salmonella_enterica	0.5207	169.465 KB	9	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJZJ010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00037419 SAMN37820677-rid19919263.denovo.07, whole genome shotgun sequence	52501..52938	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJZJ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00037419 SAMN37820677-rid19919263.guided.37, whole genome shotgun sequence	14686..15123	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJZJ010000008.1	105335..106201	99.08	870	0						
GCA_032936455.1_PDT001950147.1_genomic.fna	Salmonella_enterica	0.5203	130.055 KB	13	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJZH010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037388 SAMN37820675-rid19922183.denovo.12, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJZH010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037388 SAMN37820675-rid19922183.guided.39, whole genome shotgun sequence	31112..31549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJZH010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037388 SAMN37820675-rid19922183.denovo.56, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJZH010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037388 SAMN37820675-rid19922183.denovo.57, whole genome shotgun sequence	3345..3457																																																											
GCA_032936475.1_PDT001950144.1_genomic.fna	Salmonella_enterica	0.5207	169.684 KB	9	aroC_41,dnaN_13,hemD_10,hisD_12,purE_5,sucA_19,thrA_12	3211	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col8282	aroC	100	100	aroC_41	dnaN	100	100	dnaN_13	hemD	100	100	hemD_10	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJZK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00037525 SAMN37820678-rid19920743.denovo.01, whole genome shotgun sequence	156030..156467	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJZK010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00037525 SAMN37820678-rid19920743.guided.16, whole genome shotgun sequence	44304..44741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col8282	90.1	202 / 207	DAQJZK010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00037525 SAMN37820678-rid19920743.denovo.53, whole genome shotgun sequence	191..392																																																						avrA	DAQJZK010000002.1	146292..147161	99.77	870	0						
GCA_032936495.1_PDT001950143.1_genomic.fna	Salmonella_enterica	0.5218	105.227 KB	16	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJZM010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037547 SAMN37820679-rid19924783.denovo.24, whole genome shotgun sequence	52323..52760	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJZM010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037547 SAMN37820679-rid19924783.guided.25, whole genome shotgun sequence	34139..34576	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJZM010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037547 SAMN37820679-rid19924783.denovo.73, whole genome shotgun sequence	1189..1298																																																																	
GCA_032936515.1_PDT001950142.1_genomic.fna	Salmonella_enterica	0.5224	113.372 KB	14	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJZL010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037562 SAMN37820680-rid19920733.denovo.25, whole genome shotgun sequence	52435..52872	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJZL010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037562 SAMN37820680-rid19920733.guided.27, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQJZL010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037562 SAMN37820680-rid19920733.denovo.66, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQJZL010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037562 SAMN37820680-rid19920733.denovo.67, whole genome shotgun sequence	3345..3457																																																											
GCA_032936535.1_PDT001950141.1_genomic.fna	Salmonella_enterica	0.5208	186.241 KB	9	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQJZN010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037604 SAMN37820681-rid19926223.denovo.13, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQJZN010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037604 SAMN37820681-rid19926223.guided.21, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQJZN010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00037604 SAMN37820681-rid19926223.denovo.43, whole genome shotgun sequence	1380..1572																																																																	
GCA_032936555.1_PDT001950140.1_genomic.fna	Salmonella_enterica	0.5202	214.162 KB	7	aroC_74,dnaN_6,hemD_70,hisD_8,purE_7,sucA_79,thrA_13	210	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_74	dnaN	100	100	dnaN_6	hemD	100	100	hemD_70	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_79	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJZO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00037621 SAMN37820682-rid19919253.denovo.01, whole genome shotgun sequence	485672..486109	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJZO010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00037621 SAMN37820682-rid19919253.guided.25, whole genome shotgun sequence	16453..16890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQJZO010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00037621 SAMN37820682-rid19919253.denovo.47, whole genome shotgun sequence	547..675																																																						avrA	DAQJZO010000007.1	119577..120446	98.966	870	0						
GCA_032936575.1_PDT001950138.1_genomic.fna	Salmonella_enterica	0.5214	118.879 KB	13	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	3	aadA7,aac(3)-Id,aac(6')-Iaa,aadA7,aac(3)-Id,aac(6')-Iaa	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	1	IncQ1	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aadA7	100	677/798	DAQJZR010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022348 SAMN37820243-rid19924003.denovo.17, whole genome shotgun sequence	54587..55263	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJZR010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022348 SAMN37820243-rid19924003.denovo.17, whole genome shotgun sequence	54035..54511	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	DAQJZR010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022348 SAMN37820243-rid19924003.denovo.28, whole genome shotgun sequence	52382..52819	Amikacin, Tobramycin	NC_003197	aadA7	100	677/798	DAQJZR010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022348 SAMN37820243-rid19924003.guided.37, whole genome shotgun sequence	24829..25505	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQJZR010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022348 SAMN37820243-rid19924003.guided.37, whole genome shotgun sequence	24277..24753	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	DAQJZR010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022348 SAMN37820243-rid19924003.guided.41, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																														gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468	enterobacteriales	IncQ1	100	796 / 796	DAQJZR010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00022348 SAMN37820243-rid19924003.denovo.58, whole genome shotgun sequence	292..1087																																																						avrA	DAQJZR010000008.1	43307..44176	99.31	870	0						
GCA_032936595.1_PDT001950139.1_genomic.fna	Salmonella_enterica	0.5212	252.59 KB	7	aroC_59,dnaN_70,hemD_93,hisD_78,purE_113!,purE_113!,sucA_6,thrA_68	Unknown	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_59	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113!	purE	100	100	purE_113!	sucA	100	100	sucA_6	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJZP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00037769 SAMN37820683-rid19922173.denovo.01, whole genome shotgun sequence	479859..480296	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJZP010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00037769 SAMN37820683-rid19922173.guided.30, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJZP010000003.1	107150..108019	99.195	870	0						
GCA_032936615.1_PDT001950137.1_genomic.fna	Salmonella_enterica	0.521	174.372 KB	9	aroC_16,dnaN_16,hemD_20,hisD_602,purE_8,sucA_12,thrA_18	2177	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_602	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQJZQ010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00037787 SAMN37820684-rid19922163.denovo.02, whole genome shotgun sequence	137416..137853	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQJZQ010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00037787 SAMN37820684-rid19922163.guided.15, whole genome shotgun sequence	24974..25411	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJZQ010000004.1	182359..183225	99.08	870	0						
GCA_032936635.1_PDT001950136.1_genomic.fna	Salmonella_enterica	0.5215	354.749 KB	6	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJZS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00037811 SAMN37820685-rid19923413.denovo.01, whole genome shotgun sequence	384257..384694	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJZS010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00037811 SAMN37820685-rid19923413.guided.12, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJZS010000009.1	39483..40352	99.77	870	0						
GCA_032936655.1_PDT001950135.1_genomic.fna	Salmonella_enterica	0.5211	243.207 KB	7	aroC_43,dnaN_41,hemD_16,hisD_13,purE_12,sucA_13,thrA_4	195	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQJZU010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00037838 SAMN37820686-rid19919243.denovo.03, whole genome shotgun sequence	170095..170532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQJZU010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00037838 SAMN37820686-rid19919243.guided.24, whole genome shotgun sequence	42396..42833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032936675.1_PDT001950134.1_genomic.fna	Salmonella_enterica	0.522	243.836 KB	6	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJZT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00037855 SAMN37820687-rid19920723.denovo.01, whole genome shotgun sequence	259968..260405	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJZT010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00037855 SAMN37820687-rid19920723.guided.19, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJZT010000008.1	95271..96140	99.425	870	0						
GCA_032936695.1_PDT001950131.1_genomic.fna	Salmonella_enterica	0.5218	241.776 KB	7	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQJZX010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00037900 SAMN37820690-rid19926213.denovo.03, whole genome shotgun sequence	155685..156122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQJZX010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00037900 SAMN37820690-rid19926213.guided.13, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQJZX010000007.1	151126..151995	99.77	870	0						
GCA_032936715.1_PDT001950132.1_genomic.fna	Salmonella_enterica	0.5214	145.566 KB	11	aroC_168,dnaN_14,hemD_15,hisD_559,purE_5,sucA_90,thrA_12	2033	38:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_168	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_559	purE	100	100	purE_5	sucA	100	100	sucA_90	thrA	100	100	thrA_12	38	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Mgulani		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQJZW010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00037889 SAMN37820689-rid19920713.denovo.06, whole genome shotgun sequence	37890..38327	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQJZW010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00037889 SAMN37820689-rid19920713.guided.48, whole genome shotgun sequence	15540..15977	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	DAQJZW010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00037889 SAMN37820689-rid19920713.denovo.07, whole genome shotgun sequence	147256..147678	Fosfomycin	LAPJ01000014	fosA7	100	423/423	DAQJZW010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mgulani isolate AUSMDU00037889 SAMN37820689-rid19920713.guided.44, whole genome shotgun sequence	19136..19558	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJZW010000002.1	114719..115588	99.655	870	0						
GCA_032936735.1_PDT001950133.1_genomic.fna	Salmonella_enterica	0.5204	144.106 KB	10	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	16:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	16	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Orientalis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQJZV010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00037886 SAMN37820688-rid19924773.denovo.03, whole genome shotgun sequence	72228..72665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQJZV010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00037886 SAMN37820688-rid19924773.guided.19, whole genome shotgun sequence	9808..10245	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQJZV010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00037886 SAMN37820688-rid19924773.denovo.02, whole genome shotgun sequence	150172..150595	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQJZV010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00037886 SAMN37820688-rid19924773.guided.39, whole genome shotgun sequence	17839..18262	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJZV010000006.1	179936..180805	99.31	870	0						
GCA_032936755.1_PDT001950130.1_genomic.fna	Salmonella_enterica	0.5221	133.517 KB	12	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	DAQJZY010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00037935 SAMN37820691-rid19919233.denovo.07, whole genome shotgun sequence	52309..52746	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	DAQJZY010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00037935 SAMN37820691-rid19919233.guided.31, whole genome shotgun sequence	42442..42879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQJZY010000006.1	83255..84124	99.77	870	0						
GCA_032936775.1_PDT001950128.1_genomic.fna	Salmonella_enterica	0.5213	190.65 KB	9	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15!,purE_15!,sucA_20,thrA_12	Unknown	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15!	purE	100	100	purE_15!	sucA	100	100	sucA_20	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKAA010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00037972 SAMN37820693-rid19923993.denovo.06, whole genome shotgun sequence	62419..62856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKAA010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00037972 SAMN37820693-rid19923993.guided.24, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKAA010000004.1	148802..149671	99.77	870	0						
GCA_032936815.1_PDT001950126.1_genomic.fna	Salmonella_enterica	0.5218	174.288 KB	9	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKAB010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022352 SAMN37820244-rid19923403.denovo.02, whole genome shotgun sequence	223685..224122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQKAB010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00022352 SAMN37820244-rid19923403.guided.15, whole genome shotgun sequence	31074..31511	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKAB010000006.1	148621..149487	99.08	870	0						
GCA_032936855.1_PDT001950122.1_genomic.fna	Salmonella_enterica	0.5191	211.077 KB	8	aroC_41,dnaN_13,hemD_10,hisD_12,purE_5,sucA_19,thrA_12	3211	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_13	hemD	100	100	hemD_10	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQKAD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00038044 SAMN37820697-rid19920693.denovo.01, whole genome shotgun sequence	223759..224196	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQKAD010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00038044 SAMN37820697-rid19920693.guided.14, whole genome shotgun sequence	44303..44740	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKAD010000004.1	116450..117319	99.77	870	0						
GCA_032936875.1_PDT001950121.1_genomic.fna	Salmonella_enterica	0.5224	200.751 KB	8	aroC_301,dnaN_272,hemD_48,hisD_16,purE_40,sucA_13,thrA_3	864	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_301	dnaN	100	100	dnaN_272	hemD	100	100	hemD_48	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_3	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQKAE010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00038051 SAMN37820698-rid19927403.denovo.02, whole genome shotgun sequence	153471..153908	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQKAE010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00038051 SAMN37820698-rid19927403.guided.32, whole genome shotgun sequence	16479..16916	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032936895.1_PDT001950120.1_genomic.fna	Salmonella_enterica	0.5206	135.565 KB	11	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	-:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	-	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKAF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00040292 SAMN37820757-rid19919223.denovo.01, whole genome shotgun sequence	225862..226299	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKAF010000083.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00040292 SAMN37820757-rid19919223.guided.13, whole genome shotgun sequence	16429..16866	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQKAF010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00040292 SAMN37820757-rid19919223.denovo.02, whole genome shotgun sequence	150367..150790	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQKAF010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00040292 SAMN37820757-rid19919223.guided.45, whole genome shotgun sequence	17839..18262	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKAF010000008.1	150554..151423	99.31	870	0						
GCA_032936915.1_PDT001950119.1_genomic.fna	Salmonella_enterica	0.5201	161.839 KB	9	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	-:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	-	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQKAG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00040293 SAMN37820758-rid19926193.denovo.01, whole genome shotgun sequence	208006..208443	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQKAG010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00040293 SAMN37820758-rid19926193.guided.37, whole genome shotgun sequence	15491..15928	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQKAG010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00040293 SAMN37820758-rid19926193.denovo.03, whole genome shotgun sequence	151579..152002	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQKAG010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00040293 SAMN37820758-rid19926193.guided.40, whole genome shotgun sequence	17839..18262	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKAG010000008.1	124981..125850	99.31	870	0						
GCA_032936935.1_PDT001950116.1_genomic.fna	Salmonella_enterica	0.5212	121.559 KB	13	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKAI010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040323 SAMN37820761-rid19926183.denovo.29, whole genome shotgun sequence	52325..52762	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKAI010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040323 SAMN37820761-rid19926183.guided.34, whole genome shotgun sequence	14401..14838	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQKAI010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040323 SAMN37820761-rid19926183.denovo.60, whole genome shotgun sequence	1380..1572																																																																	
GCA_032936955.1_PDT001950118.1_genomic.fna	Salmonella_enterica	0.5219	121.488 KB	13	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	9,46:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9,46	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Waedenswil		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQKAH010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00040311 SAMN37820759-rid19924753.denovo.09, whole genome shotgun sequence	13084..13521	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQKAH010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00040311 SAMN37820759-rid19924753.guided.41, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKAH010000005.1	95129..95998	99.54	870	0						
GCA_032936975.1_PDT001950117.1_genomic.fna	Salmonella_enterica	0.522	773.538 KB	3	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	6	aac(6')-Iaa,aadA7,aac(3)-Id,aac(6')-Iaa,aadA7,aac(3)-Id,blaTEM-30,blaTEM-30,sul1,sul1,tet(A),tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKAJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040320 SAMN37820760-rid19922143.denovo.01, whole genome shotgun sequence	480643..481080	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQKAJ010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040320 SAMN37820760-rid19922143.denovo.20, whole genome shotgun sequence	11943..12740	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQKAJ010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040320 SAMN37820760-rid19922143.denovo.20, whole genome shotgun sequence	12816..13292	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	DAQKAJ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040320 SAMN37820760-rid19922143.guided.21, whole genome shotgun sequence	2491..2928	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQKAJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040320 SAMN37820760-rid19922143.guided.22, whole genome shotgun sequence	1699..2496	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQKAJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040320 SAMN37820760-rid19922143.guided.22, whole genome shotgun sequence	1147..1623	Gentamicin, Astromicin, Fortimicin	AB114632	blaTEM-30	100	861/861	DAQKAJ010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040320 SAMN37820760-rid19922143.denovo.28, whole genome shotgun sequence	406..1266	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	AJ437107	blaTEM-30	100	861/861	DAQKAJ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040320 SAMN37820760-rid19922143.guided.27, whole genome shotgun sequence	966..1826	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	AJ437107	sul1	100	840/840	DAQKAJ010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040320 SAMN37820760-rid19922143.denovo.20, whole genome shotgun sequence	10599..11438	Sulfamethoxazole	U12338	sul1	100	840/840	DAQKAJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040320 SAMN37820760-rid19922143.guided.22, whole genome shotgun sequence	3001..3840	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQKAJ010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040320 SAMN37820760-rid19922143.denovo.20, whole genome shotgun sequence	2341..3540	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQKAJ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040320 SAMN37820760-rid19922143.guided.25, whole genome shotgun sequence	208..1407	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQKAJ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040320 SAMN37820760-rid19922143.guided.26, whole genome shotgun sequence	208..1407	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																													gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	DAQKAJ010000006.1	144453..145322	99.31	870	0						
GCA_032936995.1_PDT001950115.1_genomic.fna	Salmonella_enterica	0.5215	110.076 KB	12	aroC_92,dnaN_125,hemD_78,hisD_128,purE_138,sucA_9,thrA_141	463	3,10:e,h:l,w	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_125	hemD	100	100	hemD_78	hisD	100	100	hisD_128	purE	100	100	purE_138	sucA	100	100	sucA_9	thrA	100	100	thrA_141	3,10	e,h	l,w	Salmonella enterica subspecies enterica (subspecies I)	Meleagridis		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQKAK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Meleagridis isolate AUSMDU00040324 SAMN37820762-rid19920683.denovo.01, whole genome shotgun sequence	385736..386173	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQKAK010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Meleagridis isolate AUSMDU00040324 SAMN37820762-rid19920683.guided.38, whole genome shotgun sequence	16454..16891	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	DAQKAK010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Meleagridis isolate AUSMDU00040324 SAMN37820762-rid19920683.denovo.03, whole genome shotgun sequence	160101..160523	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	DAQKAK010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Meleagridis isolate AUSMDU00040324 SAMN37820762-rid19920683.guided.50, whole genome shotgun sequence	21542..21964	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQKAK010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Meleagridis isolate AUSMDU00040324 SAMN37820762-rid19920683.denovo.68, whole genome shotgun sequence	557..687																																																						avrA	DAQKAK010000006.1	118649..119518	98.851	870	0						
GCA_032937015.1_PDT001950114.1_genomic.fna	Salmonella_enterica	0.5212	329.719 KB	7	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	7	aac(6')-Iaa,aadA7,aac(3)-Id,aac(6')-Iaa,aadA7,aac(3)-Id,blaTEM-30,blaTEM-1B,blaTEM-30,blaTEM-1B,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKAL010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040338 SAMN37820763-rid19926173.denovo.03, whole genome shotgun sequence	382924..383361	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQKAL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040338 SAMN37820763-rid19926173.denovo.36, whole genome shotgun sequence	11943..12740	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQKAL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040338 SAMN37820763-rid19926173.denovo.36, whole genome shotgun sequence	12816..13292	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	DAQKAL010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040338 SAMN37820763-rid19926173.guided.15, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQKAL010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040338 SAMN37820763-rid19926173.guided.35, whole genome shotgun sequence	1699..2496	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQKAL010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040338 SAMN37820763-rid19926173.guided.35, whole genome shotgun sequence	1147..1623	Gentamicin, Astromicin, Fortimicin	AB114632	blaTEM-30	99.88	861/861	DAQKAL010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040338 SAMN37820763-rid19926173.denovo.45, whole genome shotgun sequence	406..1266	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	AJ437107	blaTEM-1B	99.88	861/861	DAQKAL010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040338 SAMN37820763-rid19926173.denovo.45, whole genome shotgun sequence	406..1266	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-30	99.88	861/861	DAQKAL010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040338 SAMN37820763-rid19926173.guided.44, whole genome shotgun sequence	966..1826	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	AJ437107	blaTEM-1B	99.88	861/861	DAQKAL010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040338 SAMN37820763-rid19926173.guided.44, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	DAQKAL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040338 SAMN37820763-rid19926173.denovo.36, whole genome shotgun sequence	10599..11438	Sulfamethoxazole	U12338	sul1	100	840/840	DAQKAL010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040338 SAMN37820763-rid19926173.guided.35, whole genome shotgun sequence	3001..3840	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQKAL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040338 SAMN37820763-rid19926173.denovo.36, whole genome shotgun sequence	2341..3540	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQKAL010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00040338 SAMN37820763-rid19926173.guided.35, whole genome shotgun sequence	10899..12098	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	DAQKAL010000006.1	119268..120137	99.31	870	0						
GCA_032937035.1_PDT001950112.1_genomic.fna	Salmonella_enterica	0.5211	154.469 KB	12	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKAN010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040395 SAMN37820764-rid19922133.denovo.14, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKAN010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040395 SAMN37820764-rid19922133.guided.31, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQKAN010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040395 SAMN37820764-rid19922133.denovo.50, whole genome shotgun sequence	1380..1572																																																																	
GCA_032937055.1_PDT001950113.1_genomic.fna	Salmonella_enterica	0.52	184.388 KB	8	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I,Col440I	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQKAM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00022447 SAMN37820251-rid19924743.denovo.01, whole genome shotgun sequence	160151..160588	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQKAM010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00022447 SAMN37820251-rid19924743.guided.42, whole genome shotgun sequence	10094..10531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQKAM010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00022447 SAMN37820251-rid19924743.denovo.59, whole genome shotgun sequence	546..674	enterobacteriales	Col440I	90.27	113 / 114	DAQKAM010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00022447 SAMN37820251-rid19924743.denovo.49, whole genome shotgun sequence	1832..1944		enterobacteriales	Col440I	94.74	114 / 114	DAQKAM010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00022447 SAMN37820251-rid19924743.denovo.62, whole genome shotgun sequence	787..900																																									avrA	DAQKAM010000021.1	39534..40403	98.966	870	0						
GCA_032937095.1_PDT001950110.1_genomic.fna	Salmonella_enterica	0.5212	143.63 KB	12	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKAP010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040440 SAMN37820766-rid19919213.denovo.13, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKAP010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040440 SAMN37820766-rid19919213.guided.43, whole genome shotgun sequence	7857..8294	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQKAP010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040440 SAMN37820766-rid19919213.denovo.55, whole genome shotgun sequence	1380..1572																																																																	
GCA_032937115.1_PDT001950111.1_genomic.fna	Salmonella_enterica	0.5215	124.085 KB	13	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKAO010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040439 SAMN37820765-rid19926163.denovo.40, whole genome shotgun sequence	14101..14538	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKAO010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040439 SAMN37820765-rid19926163.guided.50, whole genome shotgun sequence	14142..14579	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQKAO010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040439 SAMN37820765-rid19926163.denovo.67, whole genome shotgun sequence	1380..1572																																																																	
GCA_032937135.1_PDT001950107.1_genomic.fna	Salmonella_enterica	0.52	111.337 KB	15	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQKAS010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00040444 SAMN37820769-rid19922123.denovo.006, whole genome shotgun sequence	38049..38486	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQKAS010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00040444 SAMN37820769-rid19922123.guided.054, whole genome shotgun sequence	10162..10599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQKAS010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00040444 SAMN37820769-rid19922123.denovo.043, whole genome shotgun sequence	22346..22487																																																						avrA	DAQKAS010000028.1	60545..61414	98.966	870	0						
GCA_032937155.1_PDT001950108.1_genomic.fna	Salmonella_enterica	0.5207	84.679 KB	20	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQKAR010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00040443 SAMN37820768-rid19923983.denovo.003, whole genome shotgun sequence	20880..21317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQKAR010000126.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00040443 SAMN37820768-rid19923983.guided.073, whole genome shotgun sequence	2563..3000	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKAR010000030.1	60545..61414	98.966	870	0						
GCA_032937175.1_PDT001950109.1_genomic.fna	Salmonella_enterica	0.5186	111.631 KB	14	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKAQ010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040442 SAMN37820767-rid19926153.denovo.27, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKAQ010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040442 SAMN37820767-rid19926153.guided.63, whole genome shotgun sequence	10183..10620	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQKAQ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040442 SAMN37820767-rid19926153.denovo.03, whole genome shotgun sequence	89257..89583	enterobacteriales	IncHI2A	99.84	630 / 630	DAQKAQ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040442 SAMN37820767-rid19926153.denovo.03, whole genome shotgun sequence	104449..105078																																																avrA	DAQKAQ010000018.1	60666..61535	99.77	870	0						
GCA_032937195.1_PDT001950106.1_genomic.fna	Salmonella_enterica	0.5211	61.702 KB	24	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKAT010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040481 SAMN37820770-rid19926143.denovo.053, whole genome shotgun sequence	14076..14513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKAT010000144.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040481 SAMN37820770-rid19926143.guided.066, whole genome shotgun sequence	14097..14534	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQKAT010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040481 SAMN37820770-rid19926143.denovo.112, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQKAT010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040481 SAMN37820770-rid19926143.denovo.114, whole genome shotgun sequence	3345..3457																																																											
GCA_032937215.1_PDT001950105.1_genomic.fna	Salmonella_enterica	0.5222	89.383 KB	18	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKAU010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00040482 SAMN37820771-rid19920673.denovo.05, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQKAU010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00040482 SAMN37820771-rid19920673.guided.55, whole genome shotgun sequence	14967..15404	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKAU010000037.1	43545..44410	98.966	870	0						
GCA_032937235.1_PDT001950104.1_genomic.fna	Salmonella_enterica	0.5213	100.629 KB	14	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKAV010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00040486 SAMN37820772-rid19926133.denovo.023, whole genome shotgun sequence	12525..12962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKAV010000109.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00040486 SAMN37820772-rid19926133.guided.054, whole genome shotgun sequence	10160..10597	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032937255.1_PDT001950103.1_genomic.fna	Salmonella_enterica	0.5216	72.733 KB	20	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKAW010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00040488 SAMN37820773-rid19924733.denovo.019, whole genome shotgun sequence	20895..21332	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKAW010000142.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00040488 SAMN37820773-rid19924733.guided.092, whole genome shotgun sequence	1984..2421	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032937275.1_PDT001950102.1_genomic.fna	Salmonella_enterica	0.522	116.544 KB	14	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKAX010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00022572 SAMN37820252-rid19922113.denovo.18, whole genome shotgun sequence	86575..87012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQKAX010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00022572 SAMN37820252-rid19922113.guided.39, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKAX010000017.1	102930..103799	99.195	870	0						
GCA_032937295.1_PDT001950101.1_genomic.fna	Salmonella_enterica	0.5213	323.152 KB	6	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQKAY010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00040508 SAMN37820774-rid19927393.denovo.03, whole genome shotgun sequence	230036..230473	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQKAY010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00040508 SAMN37820774-rid19927393.guided.21, whole genome shotgun sequence	16425..16862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKAY010000010.1	78594..79463	99.54	870	0						
GCA_032937315.1_PDT001950099.1_genomic.fna	Salmonella_enterica	0.5209	191.065 KB	8	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKBA010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00040565 SAMN37820776-rid19927383.denovo.02, whole genome shotgun sequence	152677..153114	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKBA010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00040565 SAMN37820776-rid19927383.guided.34, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032937375.1_PDT001950097.1_genomic.fna	Salmonella_enterica	0.5221	265.456 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113!,purE_113!,sucA_6,thrA_68	Unknown	-:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113!	purE	100	100	purE_113!	sucA	100	100	sucA_6	-	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:z10:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKBC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00040568 SAMN37820778-rid19922103.denovo.01, whole genome shotgun sequence	788192..788629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQKBC010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00040568 SAMN37820778-rid19922103.guided.27, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKBC010000006.1	107190..108059	99.195	870	0						
GCA_032937395.1_PDT001950096.1_genomic.fna	Salmonella_enterica	0.5206	197.68 KB	7	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	10	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaLAP-2,blaOXA-10,blaLAP-2,blaOXA-10,cmlA1,cmlA1,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83Y	2	IncFIB(K),IncFIB(K),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKBD010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.denovo.02, whole genome shotgun sequence	51531..51968	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	DAQKBD010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.denovo.43, whole genome shotgun sequence	730..1521	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	DAQKBD010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.denovo.43, whole genome shotgun sequence	730..1521	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	99.54	438/438	DAQKBD010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.guided.25, whole genome shotgun sequence	15533..15970	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	DAQKBD010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.guided.42, whole genome shotgun sequence	4332..5123	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	DAQKBD010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.guided.42, whole genome shotgun sequence	4332..5123	Spectinomycin, Streptomycin	JQ414041	blaLAP-2	100	858/858	DAQKBD010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.denovo.36, whole genome shotgun sequence	1141..1998	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaOXA-10	100	801/801	DAQKBD010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.denovo.43, whole genome shotgun sequence	1538..2338	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaLAP-2	100	858/858	DAQKBD010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.guided.38, whole genome shotgun sequence	1182..2039	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaOXA-10	100	801/801	DAQKBD010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.guided.42, whole genome shotgun sequence	3515..4315	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	cmlA1	99.68	1260/1260	DAQKBD010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.denovo.43, whole genome shotgun sequence	2603..3862	Chloramphenicol	M64556	cmlA1	99.68	1260/1260	DAQKBD010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.guided.42, whole genome shotgun sequence	1991..3250	Chloramphenicol	M64556	qnrS1	100	657/657	DAQKBD010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.denovo.36, whole genome shotgun sequence	3595..4251	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQKBD010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.guided.38, whole genome shotgun sequence	3636..4292	Ciprofloxacin	AB187515	ARR-2	100	453/453	DAQKBD010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.denovo.43, whole genome shotgun sequence	4183..4635	Rifampicin	HQ141279	ARR-2	100	453/453	DAQKBD010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.guided.42, whole genome shotgun sequence	1218..1670	Rifampicin	HQ141279	sul2	100	816/816	DAQKBD010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.denovo.41, whole genome shotgun sequence	3485..4300	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQKBD010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.guided.40, whole genome shotgun sequence	3526..4341	Sulfamethoxazole	AY034138	tet(A)	99.92	1200/1200	DAQKBD010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.denovo.46, whole genome shotgun sequence	1838..3037	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQKBD010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.guided.45, whole genome shotgun sequence	1080..2279	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQKBD010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.denovo.43, whole genome shotgun sequence	182..655	Trimethoprim	KF921535	dfrA14	100	474/474	DAQKBD010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.guided.42, whole genome shotgun sequence	5198..5671	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																														gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQKBD010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.denovo.36, whole genome shotgun sequence	9745..10304	enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQKBD010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.guided.38, whole genome shotgun sequence	9786..10345		enterobacteriales	IncI2(Delta)	98.42	316 / 316	DAQKBD010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040572 SAMN37820779-rid19924713.denovo.30, whole genome shotgun sequence	9048..9363																																									avrA	DAQKBD010000009.1	98004..98862	98.506	870	0						
GCA_032937415.1_PDT001950095.1_genomic.fna	Salmonella_enterica	0.5205	276.046 KB	6	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	10	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaLAP-2,blaOXA-10,blaLAP-2,blaOXA-10,cmlA1,cmlA1,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83Y	2	IncFIB(K),IncFIB(K),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKBE010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.denovo.03, whole genome shotgun sequence	51531..51968	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	DAQKBE010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.denovo.40, whole genome shotgun sequence	730..1521	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	DAQKBE010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.denovo.40, whole genome shotgun sequence	730..1521	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	99.54	438/438	DAQKBE010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.guided.16, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	DAQKBE010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.guided.39, whole genome shotgun sequence	4332..5123	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	DAQKBE010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.guided.39, whole genome shotgun sequence	4332..5123	Spectinomycin, Streptomycin	JQ414041	blaLAP-2	100	858/858	DAQKBE010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.denovo.34, whole genome shotgun sequence	1141..1998	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaOXA-10	100	801/801	DAQKBE010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.denovo.40, whole genome shotgun sequence	1538..2338	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaLAP-2	100	858/858	DAQKBE010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.guided.36, whole genome shotgun sequence	1182..2039	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaOXA-10	100	801/801	DAQKBE010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.guided.39, whole genome shotgun sequence	3515..4315	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	cmlA1	99.68	1260/1260	DAQKBE010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.denovo.40, whole genome shotgun sequence	2603..3862	Chloramphenicol	M64556	cmlA1	99.68	1260/1260	DAQKBE010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.guided.39, whole genome shotgun sequence	1991..3250	Chloramphenicol	M64556	qnrS1	100	657/657	DAQKBE010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.denovo.34, whole genome shotgun sequence	3595..4251	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQKBE010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.guided.36, whole genome shotgun sequence	3636..4292	Ciprofloxacin	AB187515	ARR-2	100	453/453	DAQKBE010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.denovo.40, whole genome shotgun sequence	4183..4635	Rifampicin	HQ141279	ARR-2	100	453/453	DAQKBE010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.guided.39, whole genome shotgun sequence	1218..1670	Rifampicin	HQ141279	sul2	100	816/816	DAQKBE010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.denovo.38, whole genome shotgun sequence	3485..4300	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQKBE010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.guided.37, whole genome shotgun sequence	3526..4341	Sulfamethoxazole	AY034138	tet(A)	99.92	1200/1200	DAQKBE010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.denovo.43, whole genome shotgun sequence	1838..3037	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQKBE010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.guided.42, whole genome shotgun sequence	1080..2279	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQKBE010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.denovo.40, whole genome shotgun sequence	182..655	Trimethoprim	KF921535	dfrA14	100	474/474	DAQKBE010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.guided.39, whole genome shotgun sequence	5198..5671	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																														gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQKBE010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.denovo.34, whole genome shotgun sequence	9745..10304	enterobacteriales	IncFIB(K)	98.93	560 / 560	DAQKBE010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.guided.36, whole genome shotgun sequence	9786..10345		enterobacteriales	IncI2(Delta)	98.42	316 / 316	DAQKBE010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00040573 SAMN37820780-rid19920663.denovo.24, whole genome shotgun sequence	9048..9363																																									avrA	DAQKBE010000009.1	98004..98862	98.506	870	0						
GCA_032937435.1_PDT001950093.1_genomic.fna	Salmonella_enterica	0.5214	133.106 KB	12	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKBG010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040613 SAMN37820782-rid19924703.denovo.13, whole genome shotgun sequence	105022..105459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKBG010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040613 SAMN37820782-rid19924703.guided.30, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQKBG010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040613 SAMN37820782-rid19924703.denovo.64, whole genome shotgun sequence	1380..1572																																																																	
GCA_032937455.1_PDT001950094.1_genomic.fna	Salmonella_enterica	0.5209	221.708 KB	7	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKBF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00040581 SAMN37820781-rid19926123.denovo.01, whole genome shotgun sequence	454793..455230	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKBF010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00040581 SAMN37820781-rid19926123.guided.31, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032937475.1_PDT001950092.1_genomic.fna	Salmonella_enterica	0.5212	139.827 KB	13	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKBH010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040628 SAMN37820783-rid19922093.denovo.11, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKBH010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040628 SAMN37820783-rid19922093.guided.23, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQKBH010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040628 SAMN37820783-rid19922093.denovo.63, whole genome shotgun sequence	1380..1572																																																																	
GCA_032937495.1_PDT001950091.1_genomic.fna	Salmonella_enterica	0.5198	138.998 KB	12	aroC_74,dnaN_6,hemD_70,hisD_8,purE_7,sucA_79,thrA_13	210	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_74	dnaN	100	100	dnaN_6	hemD	100	100	hemD_70	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_79	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQKBI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00022605 SAMN37820253-rid19924693.denovo.01, whole genome shotgun sequence	477166..477603	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQKBI010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00022605 SAMN37820253-rid19924693.guided.35, whole genome shotgun sequence	9864..10301	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKBI010000016.1	119621..120490	98.966	870	0						
GCA_032937515.1_PDT001950090.1_genomic.fna	Salmonella_enterica	0.521	113.434 KB	11	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKBJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00040630 SAMN37820784-rid19919193.denovo.01, whole genome shotgun sequence	212323..212760	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKBJ010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00040630 SAMN37820784-rid19919193.guided.13, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032937535.1_PDT001950088.1_genomic.fna	Salmonella_enterica	0.521	138.815 KB	9	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKBL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042788 SAMN37820873-rid19924683.denovo.01, whole genome shotgun sequence	377189..377626	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKBL010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00042788 SAMN37820873-rid19924683.guided.13, whole genome shotgun sequence	14873..15310	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032937555.1_PDT001950089.1_genomic.fna	Salmonella_enterica	0.5213	99.839 KB	16	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKBK010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040664 SAMN37820785-rid19927373.denovo.09, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKBK010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040664 SAMN37820785-rid19927373.guided.45, whole genome shotgun sequence	15529..15966	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQKBK010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00040664 SAMN37820785-rid19927373.denovo.82, whole genome shotgun sequence	1380..1572																																																																	
GCA_032937575.1_PDT001950086.1_genomic.fna	Salmonella_enterica	0.5228	110.017 KB	12	aroC_5,dnaN_14,hemD_6,hisD_12,purE_5,sucA_14,thrA_58	166	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_14	thrA	100	100	thrA_58	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQKBM010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00042810 SAMN37820874-rid19924673.denovo.10, whole genome shotgun sequence	13092..13529	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQKBM010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00042810 SAMN37820874-rid19924673.guided.46, whole genome shotgun sequence	11574..12011	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKBM010000019.1	43427..44296	99.655	870	0						
GCA_032937595.1_PDT001950085.1_genomic.fna	Salmonella_enterica	0.5215	133.132 KB	10	aroC_22,dnaN_104,hemD_48,hisD_231,purE_114,sucA_107,thrA_4	1069	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_48	hisD	100	100	hisD_231	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAQKBN010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00042814 SAMN37820875-rid19919183.denovo.02, whole genome shotgun sequence	83277..83714	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAQKBN010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Poona isolate AUSMDU00042814 SAMN37820875-rid19919183.guided.27, whole genome shotgun sequence	42399..42836	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKBN010000014.1	61527..62396	99.54	870	0						
GCA_032937615.1_PDT001950084.1_genomic.fna	Salmonella_enterica	0.5183	113.173 KB	15	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKBO010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042876 SAMN37820876-rid19926113.denovo.06, whole genome shotgun sequence	83634..84071	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKBO010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042876 SAMN37820876-rid19926113.guided.10, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQKBO010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042876 SAMN37820876-rid19926113.denovo.13, whole genome shotgun sequence	89254..89580	enterobacteriales	IncHI2A	99.84	630 / 630	DAQKBO010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00042876 SAMN37820876-rid19926113.denovo.13, whole genome shotgun sequence	104446..105075																																																avrA	DAQKBO010000016.1	106076..106945	99.77	870	0						
GCA_032937635.1_PDT001950082.1_genomic.fna	Salmonella_enterica	0.5212	138.818 KB	10	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKBP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00043598 SAMN37820878-rid19922073.denovo.01, whole genome shotgun sequence	212389..212826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKBP010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00043598 SAMN37820878-rid19922073.guided.41, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQKBP010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00043598 SAMN37820878-rid19922073.denovo.54, whole genome shotgun sequence	1604..1734																																																																	
GCA_032937655.1_PDT001950083.1_genomic.fna	Salmonella_enterica	0.519	152.34 KB	11	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(K),IncFII,IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKBQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00043595 SAMN37820877-rid19923973.denovo.01, whole genome shotgun sequence	20901..21338	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKBQ010000080.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00043595 SAMN37820877-rid19923973.guided.27, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(K)	99.82	560 / 560	DAQKBQ010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00043595 SAMN37820877-rid19923973.denovo.54, whole genome shotgun sequence	4259..4818	enterobacteriales	IncFII	99.62	261 / 261	DAQKBQ010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00043595 SAMN37820877-rid19923973.denovo.63, whole genome shotgun sequence	3515..3775		enterobacteriales	IncHI2	99.69	327 / 327	DAQKBQ010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00043595 SAMN37820877-rid19923973.denovo.05, whole genome shotgun sequence	89259..89585		enterobacteriales	IncHI2A	99.84	630 / 630	DAQKBQ010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00043595 SAMN37820877-rid19923973.denovo.05, whole genome shotgun sequence	104451..105080																																		avrA	DAQKBQ010000007.1	104925..105794	99.77	870	0						
GCA_032937675.1_PDT001950080.1_genomic.fna	Salmonella_enterica	0.5214	100.526 KB	15	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKBS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00043618 SAMN37820880-rid19919173.denovo.01, whole genome shotgun sequence	212226..212663	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKBS010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00043618 SAMN37820880-rid19919173.guided.41, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032937685.1_PDT001950081.1_genomic.fna	Salmonella_enterica	0.5186	141.034 KB	13	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKBR010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00043614 SAMN37820879-rid19923963.denovo.06, whole genome shotgun sequence	145344..145781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKBR010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00043614 SAMN37820879-rid19923963.guided.38, whole genome shotgun sequence	31159..31596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncHI2	99.69	327 / 327	DAQKBR010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00043614 SAMN37820879-rid19923963.denovo.08, whole genome shotgun sequence	59189..59515	enterobacteriales	IncHI2A	99.84	630 / 630	DAQKBR010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00043614 SAMN37820879-rid19923963.denovo.08, whole genome shotgun sequence	74381..75010																																																avrA	DAQKBR010000014.1	39483..40352	99.77	870	0						
GCA_032937735.1_PDT001950078.1_genomic.fna	Salmonella_enterica	0.5214	81.686 KB	19	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKBU010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00043637 SAMN37820882-rid19924663.denovo.023, whole genome shotgun sequence	62414..62851	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQKBU010000104.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00043637 SAMN37820882-rid19924663.guided.028, whole genome shotgun sequence	13878..14315	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKBU010000041.1	39483..40349	98.966	870	0						
GCA_032937755.1_PDT001950077.1_genomic.fna	Salmonella_enterica	0.5223	65.245 KB	21	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKBV010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00043639 SAMN37820883-rid19920653.denovo.019, whole genome shotgun sequence	19770..20207	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKBV010000126.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00043639 SAMN37820883-rid19920653.guided.056, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032937775.1_PDT001950076.1_genomic.fna	Salmonella_enterica	0.5225	62.537 KB	24	aroC_4,dnaN_164,hemD_134,hisD_195,purE_8,sucA_105,thrA_22	2657	8:z10:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_4	dnaN	100	100	dnaN_164	hemD	100	100	hemD_134	hisD	100	100	hisD_195	purE	100	100	purE_8	sucA	100	100	sucA_105	thrA	100	100	thrA_22	8	z10	z6	Salmonella enterica subspecies enterica (subspecies I)	Molade or Wippra	The predicted serotypes share the same general formula: 8:z10:z6 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKBW010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Molade isolate AUSMDU00022887 SAMN37820263-rid19924653.denovo.022, whole genome shotgun sequence	20757..21194	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.16	357/438	DAQKBW010000145.1 TPA_asm: Salmonella enterica subsp. enterica serovar Molade isolate AUSMDU00022887 SAMN37820263-rid19924653.guided.131, whole genome shotgun sequence	1..357	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.74	114 / 114	DAQKBW010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Molade isolate AUSMDU00022887 SAMN37820263-rid19924653.denovo.115, whole genome shotgun sequence	1876..1989																																																						avrA	DAQKBW010000013.1	81821..82690	99.195	870	0						
GCA_032937795.1_PDT001950074.1_genomic.fna	Salmonella_enterica	0.5219	150.953 KB	10	aroC_117,dnaN_14,hemD_23,hisD_127,purE_6,sucA_7,thrA_22	462	-:k:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_117	dnaN	100	100	dnaN_14	hemD	100	100	hemD_23	hisD	100	100	hisD_127	purE	100	100	purE_6	sucA	100	100	sucA_7	thrA	100	100	thrA_22	-	k	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQKBX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00043744 SAMN37820885-rid19926103.denovo.01, whole genome shotgun sequence	484371..484808	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQKBX010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00043744 SAMN37820885-rid19926103.guided.22, whole genome shotgun sequence	16459..16896	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQKBX010000010.1	147112..147981	99.77	870	0						
GCA_032937815.1_PDT001950075.1_genomic.fna	Salmonella_enterica	0.519	97.181 KB	20	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(K),IncFII,IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKBZ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00043720 SAMN37820884-rid19919163.denovo.032, whole genome shotgun sequence	15461..15898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKBZ010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00043720 SAMN37820884-rid19919163.guided.010, whole genome shotgun sequence	24988..25425	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(K)	99.82	560 / 560	DAQKBZ010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00043720 SAMN37820884-rid19919163.denovo.072, whole genome shotgun sequence	4259..4818	enterobacteriales	IncFII	99.62	261 / 261	DAQKBZ010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00043720 SAMN37820884-rid19919163.denovo.088, whole genome shotgun sequence	3515..3775		enterobacteriales	IncHI2	99.69	327 / 327	DAQKBZ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00043720 SAMN37820884-rid19919163.denovo.023, whole genome shotgun sequence	59271..59597		enterobacteriales	IncHI2A	99.84	630 / 630	DAQKBZ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00043720 SAMN37820884-rid19919163.denovo.023, whole genome shotgun sequence	74463..75092																																		avrA	DAQKBZ010000011.1	39545..40414	99.77	870	0						
GCA_032937835.1_PDT001950073.1_genomic.fna	Salmonella_enterica	0.5218	80.874 KB	18	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKBY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00043746 SAMN37820886-rid19923953.denovo.001, whole genome shotgun sequence	65175..65612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKBY010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00043746 SAMN37820886-rid19923953.guided.065, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032937855.1_PDT001950072.1_genomic.fna	Salmonella_enterica	0.5223	93.986 KB	17	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFIB(pHCM2)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQKCA010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00043760 SAMN37820887-rid19922063.denovo.19, whole genome shotgun sequence	52306..52743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQKCA010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00043760 SAMN37820887-rid19922063.guided.34, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQKCA010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00043760 SAMN37820887-rid19922063.denovo.73, whole genome shotgun sequence	557..687	enterobacteriales	IncFIB(pHCM2)	98.63	875 / 875	DAQKCA010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Montevideo isolate AUSMDU00043760 SAMN37820887-rid19922063.denovo.14, whole genome shotgun sequence	31010..31884																																																											
GCA_032937875.1_PDT001950071.1_genomic.fna	Salmonella_enterica	0.5223	65.814 KB	21	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKCB010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00043764 SAMN37820888-rid19923943.denovo.011, whole genome shotgun sequence	51503..51940	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKCB010000121.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00043764 SAMN37820888-rid19923943.guided.047, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032937895.1_PDT001950068.1_genomic.fna	Salmonella_enterica	0.5217	96.224 KB	16	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKCC010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00043835 SAMN37820891-rid19919143.denovo.04, whole genome shotgun sequence	65144..65581	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKCC010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00043835 SAMN37820891-rid19919143.guided.43, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032937915.1_PDT001950067.1_genomic.fna	Salmonella_enterica	0.5215	99.883 KB	16	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKCE010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00043837 SAMN37820892-rid19920643.denovo.021, whole genome shotgun sequence	48279..48716	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKCE010000100.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00043837 SAMN37820892-rid19920643.guided.039, whole genome shotgun sequence	31115..31552	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	DAQKCE010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00043837 SAMN37820892-rid19920643.denovo.084, whole genome shotgun sequence	1380..1572																																																																	
GCA_032937935.1_PDT001950066.1_genomic.fna	Salmonella_enterica	0.5225	98.168 KB	15	aroC_117,dnaN_14,hemD_23,hisD_127,purE_6,sucA_7,thrA_22	462	-:k:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_117	dnaN	100	100	dnaN_14	hemD	100	100	hemD_23	hisD	100	100	hisD_127	purE	100	100	purE_6	sucA	100	100	sucA_7	thrA	100	100	thrA_22	-	k	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQKCF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00043841 SAMN37820893-rid19924643.denovo.01, whole genome shotgun sequence	387273..387710	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQKCF010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00043841 SAMN37820893-rid19924643.guided.49, whole genome shotgun sequence	16459..16896	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQKCF010000006.1	147112..147981	99.77	870	0						
GCA_032937955.1_PDT001950065.1_genomic.fna	Salmonella_enterica	0.5218	326.911 KB	5	aroC_14,dnaN_2,hemD_331,hisD_7,purE_105,sucA_19,thrA_12	1815	7:y:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_2	hemD	100	100	hemD_331	hisD	100	100	hisD_7	purE	100	100	purE_105	sucA	100	100	sucA_19	thrA	100	100	thrA_12	7	y	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mikawasima		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQKCG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate AUSMDU00021379 SAMN37820201-rid19919133.denovo.01, whole genome shotgun sequence	384649..385086	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQKCG010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate AUSMDU00021379 SAMN37820201-rid19919133.guided.26, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	DAQKCG010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mikawasima isolate AUSMDU00021379 SAMN37820201-rid19919133.denovo.22, whole genome shotgun sequence	21246..21505																																																						avrA	DAQKCG010000009.1	60954..61823	99.885	870	0						
GCA_032937975.1_PDT001950063.1_genomic.fna	Salmonella_enterica	0.5218	136.032 KB	12	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKCI010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00044002 SAMN37820894-rid19919123.denovo.11, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKCI010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00044002 SAMN37820894-rid19919123.guided.25, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQKCI010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00044002 SAMN37820894-rid19919123.denovo.53, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQKCI010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00044002 SAMN37820894-rid19919123.denovo.54, whole genome shotgun sequence	3345..3457																																																											
GCA_032937995.1_PDT001950061.1_genomic.fna	Salmonella_enterica	0.5222	58.569 KB	30	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	-:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	-	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,s,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQKCK010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00044018 SAMN37820896-rid19923933.denovo.023, whole genome shotgun sequence	12482..12919	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQKCK010000195.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00044018 SAMN37820896-rid19923933.guided.054, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQKCK010000139.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00044018 SAMN37820896-rid19923933.denovo.142, whole genome shotgun sequence	547..675																																																						avrA	DAQKCK010000024.1	61411..62280	98.966	870	0						
GCA_032938015.1_PDT001950060.1_genomic.fna	Salmonella_enterica	0.5235	53.875 KB	28	aroC_99,dnaN_175,hemD_46,hisD_11,purE_111,sucA_180,thrA_1	580	-:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_99	dnaN	100	100	dnaN_175	hemD	100	100	hemD_46	hisD	100	100	hisD_11	purE	100	100	purE_111	sucA	100	100	sucA_180	thrA	100	100	thrA_1	-	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:y:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	DAQKCL010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orion isolate AUSMDU00044019 SAMN37820897-rid19919113.denovo.064, whole genome shotgun sequence	11520..11957	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	DAQKCL010000170.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orion isolate AUSMDU00044019 SAMN37820897-rid19919113.guided.055, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032938035.1_ASM3293803v1_genomic.fna	Salmonella_enterica	0.5216	4.686 MB	1	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.S83F	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	CP136645.1 Salmonella enterica subsp. enterica strain LA5 isolate 775 chromosome, complete genome	2393087..2393524	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	99	603 / 643	CP136646.1 Salmonella enterica subsp. enterica strain LA5 isolate 775 plasmid pSE775, complete sequence	1..603	enterobacteriales	IncFII(S)	100	262 / 262	CP136646.1 Salmonella enterica subsp. enterica strain LA5 isolate 775 plasmid pSE775, complete sequence	15080..15341																																																avrA	CP136645.1	1024273..1025142	99.54	870	0						
GCA_032938055.1_PDT001950070.1_genomic.fna	Salmonella_enterica	0.5226	84.246 KB	20	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKCD010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00043765 SAMN37820889-rid19919153.denovo.016, whole genome shotgun sequence	51614..52051	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKCD010000117.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00043765 SAMN37820889-rid19919153.guided.044, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032938075.1_PDT001950059.1_genomic.fna	Salmonella_enterica	0.5225	93.891 KB	18	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pHCM2)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKCM010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00044034 SAMN37820898-rid19923363.denovo.026, whole genome shotgun sequence	13081..13518	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKCM010000125.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00044034 SAMN37820898-rid19923363.guided.072, whole genome shotgun sequence	3162..3599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	98.63	875 / 875	DAQKCM010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00044034 SAMN37820898-rid19923363.denovo.013, whole genome shotgun sequence	12146..13020																																																																	
GCA_032938095.1_PDT001950064.1_genomic.fna	Salmonella_enterica	0.5233	82.149 KB	17	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	-:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	-	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:d:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	DAQKCH010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool isolate AUSMDU00022897 SAMN37820264-rid19926093.denovo.010, whole genome shotgun sequence	16618..17055	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	DAQKCH010000131.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool isolate AUSMDU00022897 SAMN37820264-rid19926093.guided.077, whole genome shotgun sequence	8657..9094	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQKCH010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool isolate AUSMDU00022897 SAMN37820264-rid19926093.denovo.100, whole genome shotgun sequence	2626..2756	enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQKCH010000108.1 TPA_asm: Salmonella enterica subsp. enterica serovar Liverpool isolate AUSMDU00022897 SAMN37820264-rid19926093.denovo.111, whole genome shotgun sequence	955..1085																																																											
GCA_032938115.1_PDT001950058.1_genomic.fna	Salmonella_enterica	0.5191	88.653 KB	20	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	-:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	2	IncHI2,IncHI2A	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	-	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKCO010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044036 SAMN37820899-rid19919103.denovo.004, whole genome shotgun sequence	56299..56736	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKCO010000115.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044036 SAMN37820899-rid19919103.guided.078, whole genome shotgun sequence	10446..10883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncHI2	99.69	327 / 327	DAQKCO010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044036 SAMN37820899-rid19919103.denovo.010, whole genome shotgun sequence	89250..89576	enterobacteriales	IncHI2A	99.84	630 / 630	DAQKCO010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00044036 SAMN37820899-rid19919103.denovo.015, whole genome shotgun sequence	92930..93559																																																avrA	DAQKCO010000003.1	107495..108364	99.77	870	0						
GCA_032938135.1_PDT001950062.1_genomic.fna	Salmonella_enterica	0.5208	75.007 KB	20	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQKCJ010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044016 SAMN37820895-rid19922053.denovo.057, whole genome shotgun sequence	11327..11764	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQKCJ010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00044016 SAMN37820895-rid19922053.guided.037, whole genome shotgun sequence	33741..34178	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKCJ010000026.1	61403..62272	99.425	870	0						
GCA_032938155.1_PDT001950057.1_genomic.fna	Salmonella_enterica	0.5217	138.827 KB	12	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKCN010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00044126 SAMN37820900-rid19920633.denovo.04, whole genome shotgun sequence	19784..20221	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKCN010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00044126 SAMN37820900-rid19920633.guided.35, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032938175.1_PDT001950056.1_genomic.fna	Salmonella_enterica	0.5233	99.827 KB	15	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKCP010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00048095 SAMN37820988-rid19924633.denovo.02, whole genome shotgun sequence	134046..134483	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKCP010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00048095 SAMN37820988-rid19924633.guided.67, whole genome shotgun sequence	7326..7763	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKCP010000009.1	43280..44149	99.77	870	0						
GCA_032938195.1_PDT001950055.1_genomic.fna	Salmonella_enterica	0.5207	149.846 KB	12	aroC_115,dnaN_75,hemD_8,hisD_115,purE_2,sucA_116,thrA_110	314	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_115	dnaN	100	100	dnaN_75	hemD	100	100	hemD_8	hisD	100	100	hisD_115	purE	100	100	purE_2	sucA	100	100	sucA_116	thrA	100	100	thrA_110	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQKCQ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048150 SAMN37820989-rid19919093.denovo.06, whole genome shotgun sequence	52478..52915	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQKCQ010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048150 SAMN37820989-rid19919093.guided.47, whole genome shotgun sequence	7704..8141	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKCQ010000025.1	39484..40353	98.851	870	0						
GCA_032938235.1_PDT001950053.1_genomic.fna	Salmonella_enterica	0.5219	171.753 KB	10	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	6	aac(6')-Iaa,aadA7,aac(3)-Id,aac(6')-Iaa,aadA7,aac(3)-Id,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKCS010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048194 SAMN37820991-rid19919083.denovo.05, whole genome shotgun sequence	78575..79012	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQKCS010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048194 SAMN37820991-rid19919083.denovo.51, whole genome shotgun sequence	11943..12740	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQKCS010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048194 SAMN37820991-rid19919083.denovo.51, whole genome shotgun sequence	12816..13292	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	DAQKCS010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048194 SAMN37820991-rid19919083.guided.27, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQKCS010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048194 SAMN37820991-rid19919083.guided.50, whole genome shotgun sequence	1699..2496	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQKCS010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048194 SAMN37820991-rid19919083.guided.50, whole genome shotgun sequence	1147..1623	Gentamicin, Astromicin, Fortimicin	AB114632	blaTEM-1B	100	861/861	DAQKCS010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048194 SAMN37820991-rid19919083.denovo.61, whole genome shotgun sequence	406..1266	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQKCS010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048194 SAMN37820991-rid19919083.guided.60, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	DAQKCS010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048194 SAMN37820991-rid19919083.denovo.51, whole genome shotgun sequence	10599..11438	Sulfamethoxazole	U12338	sul1	100	840/840	DAQKCS010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048194 SAMN37820991-rid19919083.guided.50, whole genome shotgun sequence	3001..3840	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQKCS010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048194 SAMN37820991-rid19919083.denovo.51, whole genome shotgun sequence	2341..3540	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQKCS010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048194 SAMN37820991-rid19919083.guided.50, whole genome shotgun sequence	10899..12098	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	DAQKCS010000008.1	119040..119909	99.31	870	0						
GCA_032938255.1_PDT001950054.1_genomic.fna	Salmonella_enterica	0.5218	183.625 KB	11	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKCR010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048154 SAMN37820990-rid19926083.denovo.21, whole genome shotgun sequence	52242..52679	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKCR010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048154 SAMN37820990-rid19926083.guided.33, whole genome shotgun sequence	31453..31890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQKCR010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048154 SAMN37820990-rid19926083.denovo.56, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQKCR010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048154 SAMN37820990-rid19926083.denovo.57, whole genome shotgun sequence	3345..3457																																																											
GCA_032938275.1_PDT001950052.1_genomic.fna	Salmonella_enterica	0.5205	171.127 KB	9	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	8	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,qnrS1,qnrS1,tet(A),tet(A)	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKCT010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.denovo.23, whole genome shotgun sequence	52321..52758	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQKCT010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.guided.12, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	DAQKCT010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.denovo.27, whole genome shotgun sequence	12597..13457	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQKCT010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.denovo.27, whole genome shotgun sequence	12597..13457	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQKCT010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.denovo.27, whole genome shotgun sequence	12597..13457	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQKCT010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.denovo.27, whole genome shotgun sequence	12597..13457	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQKCT010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.denovo.27, whole genome shotgun sequence	12597..13457	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	DAQKCT010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.guided.40, whole genome shotgun sequence	24443..25303	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQKCT010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.guided.40, whole genome shotgun sequence	24443..25303	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQKCT010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.guided.40, whole genome shotgun sequence	24443..25303	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQKCT010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.guided.40, whole genome shotgun sequence	24443..25303	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQKCT010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.guided.40, whole genome shotgun sequence	24443..25303	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrS1	100	657/657	DAQKCT010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.denovo.27, whole genome shotgun sequence	6579..7235	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQKCT010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.guided.40, whole genome shotgun sequence	18425..19081	Ciprofloxacin	AB187515	tet(A)	100	1200/1200	DAQKCT010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.denovo.27, whole genome shotgun sequence	14950..16149	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQKCT010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.guided.44, whole genome shotgun sequence	1091..2290	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.94	377 / 377	DAQKCT010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048262 SAMN37820992-rid19922043.denovo.27, whole genome shotgun sequence	23786..24162																																																						avrA	DAQKCT010000006.1	202428..203294	98.966	870	0						
GCA_032938295.1_PDT001950051.1_genomic.fna	Salmonella_enterica	0.5202	132.253 KB	11	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	Col(pHAD28),Col440I,Col440II,IncN	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQKCU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00048324 SAMN37820993-rid19923923.denovo.01, whole genome shotgun sequence	479773..480210	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQKCU010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00048324 SAMN37820993-rid19923923.guided.29, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQKCU010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00048324 SAMN37820993-rid19923923.denovo.61, whole genome shotgun sequence	4254..4384	enterobacteriales	Col440I	94.74	114 / 114	DAQKCU010000067.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00048324 SAMN37820993-rid19923923.denovo.70, whole genome shotgun sequence	787..900		enterobacteriales	Col440II	100	282 / 282	DAQKCU010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00048324 SAMN37820993-rid19923923.denovo.61, whole genome shotgun sequence	3396..3677		enterobacteriales	IncN	99.22	514 / 514	DAQKCU010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00048324 SAMN37820993-rid19923923.denovo.49, whole genome shotgun sequence	4488..5001																																													
GCA_032938315.1_PDT001950050.1_genomic.fna	Salmonella_enterica	0.5221	380.145 KB	4	aroC_14,dnaN_210,hemD_8,hisD_14,purE_38,sucA_19,thrA_102	1792	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	100	100	hemD_8	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQKCV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00021473 SAMN37820202-rid19920623.denovo.01, whole genome shotgun sequence	477956..478393	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQKCV010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00021473 SAMN37820202-rid19920623.guided.25, whole genome shotgun sequence	11475..11912	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	DAQKCV010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00021473 SAMN37820202-rid19920623.denovo.31, whole genome shotgun sequence	519..711																																																						avrA	DAQKCV010000002.1	515417..516286	99.54	870	0						
GCA_032938335.1_PDT001950048.1_genomic.fna	Salmonella_enterica	0.5209	159.518 KB	9	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	8	aac(6')-Iaa,aac(6')-Iaa,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,blaTEM-220,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-1B,qnrS1,qnrS1,tet(A),tet(A)	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKCW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.denovo.01, whole genome shotgun sequence	370147..370584	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQKCW010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.guided.36, whole genome shotgun sequence	13970..14407	Amikacin, Tobramycin	NC_003197	blaTEM-220	99.88	861/861	DAQKCW010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.denovo.27, whole genome shotgun sequence	56879..57739	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQKCW010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.denovo.27, whole genome shotgun sequence	56879..57739	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQKCW010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.denovo.27, whole genome shotgun sequence	56879..57739	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQKCW010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.denovo.27, whole genome shotgun sequence	56879..57739	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQKCW010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.denovo.27, whole genome shotgun sequence	56879..57739	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.88	861/861	DAQKCW010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.guided.39, whole genome shotgun sequence	19712..20572	Unknown Beta-lactam	KM998962	blaTEM-135	99.88	861/861	DAQKCW010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.guided.39, whole genome shotgun sequence	19712..20572	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.88	861/861	DAQKCW010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.guided.39, whole genome shotgun sequence	19712..20572	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.88	861/861	DAQKCW010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.guided.39, whole genome shotgun sequence	19712..20572	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-1B	99.88	861/861	DAQKCW010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.guided.39, whole genome shotgun sequence	19712..20572	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrS1	100	657/657	DAQKCW010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.denovo.27, whole genome shotgun sequence	50861..51517	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQKCW010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.guided.39, whole genome shotgun sequence	13694..14350	Ciprofloxacin	AB187515	tet(A)	100	1200/1200	DAQKCW010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.denovo.27, whole genome shotgun sequence	1150..2349	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQKCW010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.guided.43, whole genome shotgun sequence	1091..2290	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.94	377 / 377	DAQKCW010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00048407 SAMN37820994-rid19919073.denovo.27, whole genome shotgun sequence	9986..10362																																																						avrA	DAQKCW010000016.1	126023..126889	98.966	870	0						
GCA_032938355.1_PDT001950047.1_genomic.fna	Salmonella_enterica	0.5214	84.131 KB	18	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col156,Col440I,Col440I,IncX1	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKCX010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048461 SAMN37820995-rid19920613.denovo.026, whole genome shotgun sequence	48268..48705	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKCX010000119.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048461 SAMN37820995-rid19920613.guided.090, whole genome shotgun sequence	3561..3998	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	DAQKCX010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048461 SAMN37820995-rid19920613.denovo.089, whole genome shotgun sequence	4076..4229	enterobacteriales	Col440I	93.64	110 / 114	DAQKCX010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048461 SAMN37820995-rid19920613.denovo.092, whole genome shotgun sequence	1189..1298		enterobacteriales	Col440I	90.27	113 / 114	DAQKCX010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048461 SAMN37820995-rid19920613.denovo.093, whole genome shotgun sequence	3345..3457		enterobacteriales	IncX1	98.4	374 / 374	DAQKCX010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048461 SAMN37820995-rid19920613.denovo.048, whole genome shotgun sequence	12570..12943																																													
GCA_032938375.1_PDT001950045.1_genomic.fna	Salmonella_enterica	0.5227	62.4 KB	22	aroC_14,dnaN_210,hemD_8,hisD_14,purE_38,sucA_19,thrA_102	1792	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	100	100	hemD_8	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQKCZ010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00048605 SAMN37820997-rid19919063.denovo.062, whole genome shotgun sequence	11351..11788	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQKCZ010000138.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00048605 SAMN37820997-rid19919063.guided.066, whole genome shotgun sequence	14031..14468	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKCZ010000021.1	60939..61808	99.54	870	0						
GCA_032938395.1_PDT001950046.1_genomic.fna	Salmonella_enterica	0.522	111.278 KB	14	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	6	aac(6')-Iaa,aadA7,aac(3)-Id,aac(6')-Iaa,aadA7,aac(3)-Id,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKCY010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048478 SAMN37820996-rid19924623.denovo.27, whole genome shotgun sequence	52399..52836	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQKCY010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048478 SAMN37820996-rid19924623.denovo.55, whole genome shotgun sequence	11943..12740	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQKCY010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048478 SAMN37820996-rid19924623.denovo.55, whole genome shotgun sequence	12816..13292	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	DAQKCY010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048478 SAMN37820996-rid19924623.guided.51, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	DAQKCY010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048478 SAMN37820996-rid19924623.guided.63, whole genome shotgun sequence	1699..2496	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	DAQKCY010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048478 SAMN37820996-rid19924623.guided.63, whole genome shotgun sequence	1147..1623	Gentamicin, Astromicin, Fortimicin	AB114632	blaTEM-1B	100	861/861	DAQKCY010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048478 SAMN37820996-rid19924623.denovo.66, whole genome shotgun sequence	406..1266	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQKCY010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048478 SAMN37820996-rid19924623.guided.65, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	DAQKCY010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048478 SAMN37820996-rid19924623.denovo.55, whole genome shotgun sequence	10599..11438	Sulfamethoxazole	U12338	sul1	100	840/840	DAQKCY010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048478 SAMN37820996-rid19924623.guided.63, whole genome shotgun sequence	3001..3840	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQKCY010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048478 SAMN37820996-rid19924623.denovo.55, whole genome shotgun sequence	2341..3540	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQKCY010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kentucky isolate AUSMDU00048478 SAMN37820996-rid19924623.guided.61, whole genome shotgun sequence	3985..5184	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	DAQKCY010000002.1	144453..145322	99.31	870	0						
GCA_032938415.1_PDT001950044.1_genomic.fna	Salmonella_enterica	0.5207	78.241 KB	21	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKDA010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048627 SAMN37820998-rid19926073.denovo.007, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKDA010000120.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048627 SAMN37820998-rid19926073.guided.081, whole genome shotgun sequence	2489..2926	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQKDA010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048627 SAMN37820998-rid19926073.denovo.095, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQKDA010000093.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048627 SAMN37820998-rid19926073.denovo.096, whole genome shotgun sequence	3345..3457																																																											
GCA_032938435.1_PDT001950043.1_genomic.fna	Salmonella_enterica	0.5206	99.726 KB	14	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKDB010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048628 SAMN37820999-rid19919053.denovo.026, whole genome shotgun sequence	12510..12947	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKDB010000104.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048628 SAMN37820999-rid19919053.guided.067, whole genome shotgun sequence	1958..2395	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQKDB010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048628 SAMN37820999-rid19919053.denovo.079, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQKDB010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00048628 SAMN37820999-rid19919053.denovo.081, whole genome shotgun sequence	3345..3457																																																											
GCA_032938455.1_PDT001950042.1_genomic.fna	Salmonella_enterica	0.5215	115.952 KB	15	aroC_41,dnaN_13,hemD_10,hisD_12,purE_5,sucA_19,thrA_12	3211	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_41	dnaN	100	100	dnaN_13	hemD	100	100	hemD_10	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQKDC010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00048631 SAMN37821000-rid19922033.denovo.19, whole genome shotgun sequence	15466..15903	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQKDC010000087.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00048631 SAMN37821000-rid19922033.guided.64, whole genome shotgun sequence	2020..2457	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	DAQKDC010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00048631 SAMN37821000-rid19922033.denovo.68, whole genome shotgun sequence	967..1118																																																						avrA	DAQKDC010000010.1	62588..63457	99.77	870	0						
GCA_032938475.1_PDT001950041.1_genomic.fna	Salmonella_enterica	0.5223	173.072 KB	10	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKDD010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00048937 SAMN37821001-rid19924613.denovo.03, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKDD010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00048937 SAMN37821001-rid19924613.guided.28, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQKDD010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00048937 SAMN37821001-rid19924613.denovo.48, whole genome shotgun sequence	3981..4111																																																						avrA	DAQKDD010000009.1	107650..108519	99.655	870	0						
GCA_032938495.1_PDT001950040.1_genomic.fna	Salmonella_enterica	0.5213	165.227 KB	10	aroC_13,dnaN_83,hemD_25,hisD_413,purE_220,sucA_23,thrA_4	973	-:k:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_83	hemD	100	100	hemD_25	hisD	100	100	hisD_413	purE	100	100	purE_220	sucA	100	100	sucA_23	thrA	100	100	thrA_4	-	k	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQKDE010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Matadi isolate AUSMDU00048981 SAMN37821002-rid19920603.denovo.09, whole genome shotgun sequence	13076..13513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQKDE010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Matadi isolate AUSMDU00048981 SAMN37821002-rid19920603.guided.25, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKDE010000006.1	146702..147571	99.54	870	0						
GCA_032938515.1_PDT001950038.1_genomic.fna	Salmonella_enterica	0.5222	162.049 KB	9	aroC_2,dnaN_2,hemD_9,hisD_7,purE_105,sucA_513,thrA_86	2462	7:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_9	hisD	100	100	hisD_7	purE	100	100	purE_105	sucA	100	100	sucA_513	thrA	100	100	thrA_86	7	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Potsdam		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQKDF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023139 SAMN37820275-rid19920593.denovo.01, whole genome shotgun sequence	113539..113976	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQKDF010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Potsdam isolate AUSMDU00023139 SAMN37820275-rid19920593.guided.32, whole genome shotgun sequence	14446..14883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKDF010000010.1	60798..61667	99.655	870	0						
GCA_032938535.1_PDT001950037.1_genomic.fna	Salmonella_enterica	0.5208	154.68 KB	9	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col156,Col440I,Col440I,IncX1	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKDG010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00049075 SAMN37821004-rid19920583.denovo.20, whole genome shotgun sequence	52344..52781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKDG010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00049075 SAMN37821004-rid19920583.guided.21, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	DAQKDG010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00049075 SAMN37821004-rid19920583.denovo.47, whole genome shotgun sequence	4076..4229	enterobacteriales	Col440I	93.64	110 / 114	DAQKDG010000047.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00049075 SAMN37821004-rid19920583.denovo.50, whole genome shotgun sequence	1189..1298		enterobacteriales	Col440I	90.27	113 / 114	DAQKDG010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00049075 SAMN37821004-rid19920583.denovo.51, whole genome shotgun sequence	3345..3457		enterobacteriales	IncX1	98.4	374 / 374	DAQKDG010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00049075 SAMN37821004-rid19920583.denovo.35, whole genome shotgun sequence	12570..12943																																													
GCA_032938555.1_PDT001950036.1_genomic.fna	Salmonella_enterica	0.5213	135.13 KB	12	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQKDH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00049091 SAMN37821005-rid19924603.denovo.01, whole genome shotgun sequence	61322..61759	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQKDH010000077.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kiambu isolate AUSMDU00049091 SAMN37821005-rid19924603.guided.16, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032938595.1_PDT001950031.1_genomic.fna	Salmonella_enterica	0.5213	95.299 KB	15	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col156,Col440I,Col440I,IncX1	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKDN010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00049659 SAMN37821010-rid19923913.denovo.16, whole genome shotgun sequence	52316..52753	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKDN010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00049659 SAMN37821010-rid19923913.guided.22, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	DAQKDN010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00049659 SAMN37821010-rid19923913.denovo.75, whole genome shotgun sequence	4076..4229	enterobacteriales	Col440I	93.64	110 / 114	DAQKDN010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00049659 SAMN37821010-rid19923913.denovo.79, whole genome shotgun sequence	1189..1298		enterobacteriales	Col440I	90.27	113 / 114	DAQKDN010000078.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00049659 SAMN37821010-rid19923913.denovo.81, whole genome shotgun sequence	3345..3457		enterobacteriales	IncX1	98.4	374 / 374	DAQKDN010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00049659 SAMN37821010-rid19923913.denovo.45, whole genome shotgun sequence	12570..12943																																													
GCA_032938615.1_PDT001950033.1_genomic.fna	Salmonella_enterica	0.5223	140.572 KB	12	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	9,46:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	9,46	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	Geraldton		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQKDL010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar London isolate AUSMDU00049513 SAMN37821008-rid19919043.denovo.26, whole genome shotgun sequence	20901..21338	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQKDL010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar London isolate AUSMDU00049513 SAMN37821008-rid19919043.guided.29, whole genome shotgun sequence	44304..44741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKDL010000016.1	114444..115313	99.425	870	0						
GCA_032938635.1_PDT001950035.1_genomic.fna	Salmonella_enterica	0.5217	225.632 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKDI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00049098 SAMN37821006-rid19922023.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKDI010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Infantis isolate AUSMDU00049098 SAMN37821006-rid19922023.guided.24, whole genome shotgun sequence	34164..34601	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKDI010000004.1	149818..150687	99.77	870	0						
GCA_032938645.1_PDT001950032.1_genomic.fna	Salmonella_enterica	0.5223	92.349 KB	15	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKDK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00049531 SAMN37821009-rid19922013.denovo.001, whole genome shotgun sequence	134050..134487	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKDK010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00049531 SAMN37821009-rid19922013.guided.013, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQKDK010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00049531 SAMN37821009-rid19922013.denovo.078, whole genome shotgun sequence	3981..4111																																																						avrA	DAQKDK010000004.1	105967..106836	99.655	870	0						
GCA_032938675.1_PDT001950034.1_genomic.fna	Salmonella_enterica	0.5219	228.769 KB	7	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKDJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00049340 SAMN37821007-rid19926053.denovo.01, whole genome shotgun sequence	145370..145807	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKDJ010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00049340 SAMN37821007-rid19926053.guided.14, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQKDJ010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00049340 SAMN37821007-rid19926053.denovo.42, whole genome shotgun sequence	3981..4111																																																						avrA	DAQKDJ010000013.1	39483..40352	99.655	870	0						
GCA_032938695.1_PDT001950028.1_genomic.fna	Salmonella_enterica	0.5218	234.312 KB	6	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKDP010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00051136 SAMN37821013-rid19920573.denovo.04, whole genome shotgun sequence	223634..224071	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKDP010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00051136 SAMN37821013-rid19920573.guided.16, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQKDP010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00051136 SAMN37821013-rid19920573.denovo.37, whole genome shotgun sequence	3981..4111																																																						avrA	DAQKDP010000009.1	122627..123496	99.655	870	0						
GCA_032938705.1_PDT001950029.1_genomic.fna	Salmonella_enterica	0.5223	198.351 KB	8	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKDO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00051131 SAMN37821012-rid19926043.denovo.01, whole genome shotgun sequence	145370..145807	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKDO010000055.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00051131 SAMN37821012-rid19926043.guided.28, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQKDO010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00051131 SAMN37821012-rid19926043.denovo.47, whole genome shotgun sequence	3981..4111																																																						avrA	DAQKDO010000008.1	107644..108513	99.655	870	0						
GCA_032938735.1_PDT001950030.1_genomic.fna	Salmonella_enterica	0.5217	80.113 KB	18	aroC_41,dnaN_13,hemD_10,hisD_12,purE_5,sucA_19,thrA_12	3211	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_41	dnaN	100	100	dnaN_13	hemD	100	100	hemD_10	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQKDM010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00051002 SAMN37821011-rid19922003.denovo.026, whole genome shotgun sequence	12486..12923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQKDM010000102.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00051002 SAMN37821011-rid19922003.guided.035, whole genome shotgun sequence	14405..14842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	DAQKDM010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00051002 SAMN37821011-rid19922003.denovo.084, whole genome shotgun sequence	967..1118																																																						avrA	DAQKDM010000009.1	116481..117350	99.77	870	0						
GCA_032938755.1_PDT001950027.1_genomic.fna	Salmonella_enterica	0.5207	92.459 KB	17	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQKDQ010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00023230 SAMN37820276-rid19921993.denovo.010, whole genome shotgun sequence	52333..52770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQKDQ010000116.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00023230 SAMN37820276-rid19921993.guided.059, whole genome shotgun sequence	1863..2300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	DAQKDQ010000089.1 TPA_asm: Salmonella enterica subsp. enterica serovar Senftenberg isolate AUSMDU00023230 SAMN37820276-rid19921993.denovo.092, whole genome shotgun sequence	547..675																																																						avrA	DAQKDQ010000003.1	116837..117706	98.966	870	0						
GCA_032938775.1_PDT001950026.1_genomic.fna	Salmonella_enterica	0.5209	246.873 KB	6	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQKDR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00073171 SAMN37821014-rid19926033.denovo.01, whole genome shotgun sequence	461696..462133	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQKDR010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00073171 SAMN37821014-rid19926033.guided.26, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKDR010000011.1	60945..61814	99.54	870	0						
GCA_032938795.1_PDT001950024.1_genomic.fna	Salmonella_enterica	0.5223	156.17 KB	9	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKDT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00021600 SAMN37820210-rid19927363.denovo.01, whole genome shotgun sequence	38033..38470	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKDT010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00021600 SAMN37820210-rid19927363.guided.42, whole genome shotgun sequence	10143..10580	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQKDT010000013.1	39483..40352	99.77	870	0						
GCA_032938815.1_PDT001950025.1_genomic.fna	Salmonella_enterica	0.5213	140.747 KB	11	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQKDS010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00073172 SAMN37821015-rid19921983.denovo.18, whole genome shotgun sequence	91987..92424	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQKDS010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Reading isolate AUSMDU00073172 SAMN37821015-rid19921983.guided.43, whole genome shotgun sequence	9272..9709	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKDS010000016.1	105951..106820	99.54	870	0						
GCA_032938835.1_PDT001950023.1_genomic.fna	Salmonella_enterica	0.5221	121.248 KB	11	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKDV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025459 SAMN37820354-rid19919033.denovo.01, whole genome shotgun sequence	359031..359468	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKDV010000090.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025459 SAMN37820354-rid19919033.guided.51, whole genome shotgun sequence	9267..9704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032938855.1_PDT001950021.1_genomic.fna	Salmonella_enterica	0.5215	114.989 KB	12	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKDW010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025467 SAMN37820356-rid19924593.denovo.02, whole genome shotgun sequence	74470..74907	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKDW010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025467 SAMN37820356-rid19924593.guided.13, whole genome shotgun sequence	15864..16301	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032938875.1_PDT001950022.1_genomic.fna	Salmonella_enterica	0.5224	206.605 KB	8	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKDU010000005.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025466 SAMN37820355-rid19921973.denovo.05, whole genome shotgun sequence	116821..117258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKDU010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025466 SAMN37820355-rid19921973.guided.48, whole genome shotgun sequence	2035..2472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032938895.1_PDT001950020.1_genomic.fna	Salmonella_enterica	0.5216	208.026 KB	7	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKDX010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00025494 SAMN37820357-rid19921963.denovo.13, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKDX010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00025494 SAMN37820357-rid19921963.guided.27, whole genome shotgun sequence	7963..8400	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQKDX010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00025494 SAMN37820357-rid19921963.denovo.40, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQKDX010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00025494 SAMN37820357-rid19921963.denovo.41, whole genome shotgun sequence	3345..3457																																																											
GCA_032938915.1_PDT001950019.1_genomic.fna	Salmonella_enterica	0.5219	103.444 KB	14	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQKDY010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00025581 SAMN37820358-rid19926023.denovo.21, whole genome shotgun sequence	15415..15852	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQKDY010000084.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00025581 SAMN37820358-rid19926023.guided.36, whole genome shotgun sequence	15446..15883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032938935.1_PDT001950016.1_genomic.fna	Salmonella_enterica	0.5208	129.95 KB	9	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCRY)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKEA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025605 SAMN37820361-rid19924583.denovo.01, whole genome shotgun sequence	454803..455240	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKEA010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025605 SAMN37820361-rid19924583.guided.15, whole genome shotgun sequence	3140..3577	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	96.46	593 / 593	DAQKEA010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025605 SAMN37820361-rid19924583.denovo.49, whole genome shotgun sequence	18551..19143																																																																	
GCA_032938955.1_PDT001950017.1_genomic.fna	Salmonella_enterica	0.5215	143.878 KB	9	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKDZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025587 SAMN37820360-rid19921953.denovo.01, whole genome shotgun sequence	359037..359474	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKDZ010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025587 SAMN37820360-rid19921953.guided.12, whole genome shotgun sequence	14125..14562	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032938975.1_PDT001950014.1_genomic.fna	Salmonella_enterica	0.5209	152.927 KB	8	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCRY)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKEC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025662 SAMN37820363-rid19927353.denovo.01, whole genome shotgun sequence	358986..359423	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKEC010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025662 SAMN37820363-rid19927353.guided.44, whole genome shotgun sequence	9290..9727	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	96.46	593 / 593	DAQKEC010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025662 SAMN37820363-rid19927353.denovo.42, whole genome shotgun sequence	18551..19143																																																																	
GCA_032938985.1_PDT001950015.1_genomic.fna	Salmonella_enterica	0.5216	90.218 KB	16	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCRY)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKEB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025614 SAMN37820362-rid19921943.denovo.001, whole genome shotgun sequence	359027..359464	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKEB010000123.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025614 SAMN37820362-rid19921943.guided.074, whole genome shotgun sequence	8979..9416	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	96.46	593 / 593	DAQKEB010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025614 SAMN37820362-rid19921943.denovo.061, whole genome shotgun sequence	18551..19143																																																																	
GCA_032939015.1_PDT001950011.1_genomic.fna	Salmonella_enterica	0.5188	150.601 KB	11	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	-:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	-	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQKEE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00025714 SAMN37820365-rid19924573.denovo.01, whole genome shotgun sequence	72228..72665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQKEE010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00025714 SAMN37820365-rid19924573.guided.41, whole genome shotgun sequence	16429..16866	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQKEE010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00025714 SAMN37820365-rid19924573.denovo.03, whole genome shotgun sequence	150171..150594	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQKEE010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00025714 SAMN37820365-rid19924573.guided.44, whole genome shotgun sequence	17839..18262	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKEE010000008.1	125016..125885	99.31	870	0						
GCA_032939035.1_PDT001950012.1_genomic.fna	Salmonella_enterica	0.522	308.027 KB	6	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKED010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00025680 SAMN37820364-rid19921933.denovo.01, whole genome shotgun sequence	150046..150483	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKED010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00025680 SAMN37820364-rid19921933.guided.25, whole genome shotgun sequence	21515..21952	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKED010000005.1	175648..176517	99.77	870	0						
GCA_032939055.1_PDT001950010.1_genomic.fna	Salmonella_enterica	0.5212	112.903 KB	13	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15!,purE_15!,sucA_20,thrA_12	Unknown	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15!	purE	100	100	purE_15!	sucA	100	100	sucA_20	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKEF010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00025716 SAMN37820366-rid19921923.denovo.09, whole genome shotgun sequence	62443..62880	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKEF010000081.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00025716 SAMN37820366-rid19921923.guided.17, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKEF010000005.1	148827..149696	99.77	870	0						
GCA_032939075.1_PDT001950009.1_genomic.fna	Salmonella_enterica	0.5212	119.715 KB	13	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKEG010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00025717 SAMN37820367-rid19926013.denovo.06, whole genome shotgun sequence	62427..62864	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKEG010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00025717 SAMN37820367-rid19926013.guided.28, whole genome shotgun sequence	24985..25422	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKEG010000004.1	148737..149606	99.77	870	0						
GCA_032939095.1_PDT001950007.1_genomic.fna	Salmonella_enterica	0.5217	96.631 KB	16	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKEI010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025764 SAMN37820369-rid19926003.denovo.014, whole genome shotgun sequence	38049..38486	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKEI010000107.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025764 SAMN37820369-rid19926003.guided.062, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQKEI010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025764 SAMN37820369-rid19926003.denovo.020, whole genome shotgun sequence	76403..76544																																																																	
GCA_032939115.1_PDT001950008.1_genomic.fna	Salmonella_enterica	0.5205	125.204 KB	13	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	-:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	-	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:m,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQKEH010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00025739 SAMN37820368-rid19919013.denovo.04, whole genome shotgun sequence	87778..88215	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQKEH010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Oranienburg isolate AUSMDU00025739 SAMN37820368-rid19919013.guided.41, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032939135.1_PDT001950006.1_genomic.fna	Salmonella_enterica	0.5211	176.102 KB	11	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15!,purE_15!,sucA_20,thrA_12	Unknown	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15!	purE	100	100	purE_15!	sucA	100	100	sucA_20	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKEJ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00025765 SAMN37820370-rid19923903.denovo.07, whole genome shotgun sequence	62443..62880	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKEJ010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00025765 SAMN37820370-rid19923903.guided.25, whole genome shotgun sequence	24985..25422	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKEJ010000013.1	148827..149696	99.77	870	0						
GCA_032939155.1_PDT001950004.1_genomic.fna	Salmonella_enterica	0.5217	200.399 KB	7	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKEK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00025773 SAMN37820372-rid19923343.denovo.01, whole genome shotgun sequence	374993..375430	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKEK010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00025773 SAMN37820372-rid19923343.guided.26, whole genome shotgun sequence	34215..34652	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	262 / 262	DAQKEK010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00025773 SAMN37820372-rid19923343.denovo.32, whole genome shotgun sequence	13001..13262																																																						avrA	DAQKEK010000008.1	106779..107648	99.77	870	0						
GCA_032939175.1_PDT001950003.1_genomic.fna	Salmonella_enterica	0.5193	123.12 KB	12	aroC_41,dnaN_13,hemD_10,hisD_12,purE_5,sucA_19,thrA_12	3211	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_13	hemD	100	100	hemD_10	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQKEL010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00025850 SAMN37820373-rid19919003.denovo.04, whole genome shotgun sequence	223656..224093	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQKEL010000076.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00025850 SAMN37820373-rid19919003.guided.33, whole genome shotgun sequence	44304..44741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKEL010000009.1	116365..117234	99.77	870	0						
GCA_032939195.1_PDT001950001.1_genomic.fna	Salmonella_enterica	0.5222	299.072 KB	6	aroC_5,dnaN_14,hemD_6,hisD_12,purE_5,sucA_14,thrA_58	166	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_14	thrA	100	100	thrA_58	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQKEN010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00025878 SAMN37820374-rid19924563.denovo.08, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQKEN010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00025878 SAMN37820374-rid19924563.guided.23, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKEN010000001.1	554504..555373	99.655	870	0						
GCA_032939215.1_PDT001950002.1_genomic.fna	Salmonella_enterica	0.5209	283.389 KB	7	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQKEM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00021608 SAMN37820212-rid19923333.denovo.01, whole genome shotgun sequence	134003..134440	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQKEM010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenster isolate AUSMDU00021608 SAMN37820212-rid19923333.guided.27, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKEM010000006.1	114973..115842	99.54	870	0						
GCA_032939235.1_PDT001949999.1_genomic.fna	Salmonella_enterica	0.5215	197.099 KB	7	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKEO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00025954 SAMN37820376-rid19925993.denovo.01, whole genome shotgun sequence	479822..480259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQKEO010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mbandaka isolate AUSMDU00025954 SAMN37820376-rid19925993.guided.32, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKEO010000006.1	107185..108054	99.195	870	0						
GCA_032939255.1_PDT001949998.1_genomic.fna	Salmonella_enterica	0.5222	213.453 KB	8	aroC_5,dnaN_14,hemD_6,hisD_12,purE_5,sucA_14,thrA_58	166	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_14	thrA	100	100	thrA_58	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQKEP010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00025956 SAMN37820377-rid19918993.denovo.08, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQKEP010000048.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00025956 SAMN37820377-rid19918993.guided.25, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKEP010000003.1	39547..40416	99.655	870	0						
GCA_032939295.1_PDT001949994.1_genomic.fna	Salmonella_enterica	0.5222	302.916 KB	6	aroC_5,dnaN_14,hemD_6,hisD_12,purE_5,sucA_14,thrA_58	166	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_14	thrA	100	100	thrA_58	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQKET010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00025967 SAMN37820381-rid19923323.denovo.01, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQKET010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00025967 SAMN37820381-rid19923323.guided.25, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKET010000003.1	403427..404296	99.655	870	0						
GCA_032939305.1_PDT001949996.1_genomic.fna	Salmonella_enterica	0.5219	233.152 KB	7	aroC_5,dnaN_14,hemD_6,hisD_12,purE_5,sucA_14,thrA_58	166	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_14	thrA	100	100	thrA_58	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQKER010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00025958 SAMN37820379-rid19923893.denovo.01, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQKER010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00025958 SAMN37820379-rid19923893.guided.21, whole genome shotgun sequence	40143..40580	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKER010000010.1	39483..40352	99.655	870	0						
GCA_032939335.1_PDT001949997.1_genomic.fna	Salmonella_enterica	0.5215	149.103 KB	8	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKEQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025957 SAMN37820378-rid19925983.denovo.01, whole genome shotgun sequence	454838..455275	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKEQ010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025957 SAMN37820378-rid19925983.guided.21, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032939355.1_PDT001949993.1_genomic.fna	Salmonella_enterica	0.5219	191.065 KB	8	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKEU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00026025 SAMN37820382-rid19918983.denovo.01, whole genome shotgun sequence	359111..359548	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKEU010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00026025 SAMN37820382-rid19918983.guided.38, whole genome shotgun sequence	13992..14429	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032939375.1_PDT001949995.1_genomic.fna	Salmonella_enterica	0.5217	132.306 KB	9	aroC_48,dnaN_198,hemD_96,hisD_119,purE_219,sucA_119,thrA_118	5834	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_219	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKES010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025963 SAMN37820380-rid19921903.denovo.01, whole genome shotgun sequence	454762..455199	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKES010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Mississippi isolate AUSMDU00025963 SAMN37820380-rid19921903.guided.45, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032939395.1_PDT001949991.1_genomic.fna	Salmonella_enterica	0.5222	141.956 KB	11	aroC_14,dnaN_210,hemD_8,hisD_14,purE_38,sucA_19,thrA_102	1792	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_210	hemD	100	100	hemD_8	hisD	100	100	hisD_14	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_102	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQKEV010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00029076 SAMN37820470-rid19924553.denovo.02, whole genome shotgun sequence	176701..177138	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQKEV010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Kottbus isolate AUSMDU00029076 SAMN37820470-rid19924553.guided.26, whole genome shotgun sequence	42397..42834	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKEV010000007.1	98277..99146	99.54	870	0						
GCA_032939415.1_PDT001949990.1_genomic.fna	Salmonella_enterica	0.5216	106.634 KB	14	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKEW010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00029109 SAMN37820471-rid19920543.denovo.21, whole genome shotgun sequence	52263..52700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQKEW010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00029109 SAMN37820471-rid19920543.guided.42, whole genome shotgun sequence	15526..15963	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKEW010000013.1	105337..106203	99.08	870	0						
GCA_032939435.1_PDT001949989.1_genomic.fna	Salmonella_enterica	0.5212	68.726 KB	22	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	-:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	-	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQKFB010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029121 SAMN37820472-rid19925973.denovo.056, whole genome shotgun sequence	14126..14563	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQKFB010000133.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029121 SAMN37820472-rid19925973.guided.063, whole genome shotgun sequence	14179..14616	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQKFB010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029121 SAMN37820472-rid19925973.denovo.038, whole genome shotgun sequence	33610..34033	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQKFB010000134.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029121 SAMN37820472-rid19925973.guided.070, whole genome shotgun sequence	17839..18262	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKFB010000009.1	43540..44409	99.31	870	0						
GCA_032939455.1_PDT001949987.1_genomic.fna	Salmonella_enterica	0.5195	147.113 KB	9	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQKEY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00021903 SAMN37820222-rid19925963.denovo.01, whole genome shotgun sequence	375037..375474	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQKEY010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00021903 SAMN37820222-rid19925963.guided.10, whole genome shotgun sequence	44187..44624	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKEY010000005.1	114582..115451	99.425	870	0						
GCA_032939475.1_PDT001949988.1_genomic.fna	Salmonella_enterica	0.5223	77.314 KB	20	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	-:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	-	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKEX010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00029128 SAMN37820473-rid19918973.denovo.026, whole genome shotgun sequence	12515..12952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQKEX010000106.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00029128 SAMN37820473-rid19918973.guided.038, whole genome shotgun sequence	37363..37800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKEX010000017.1	81329..82195	98.966	870	0						
GCA_032939495.1_PDT001949984.1_genomic.fna	Salmonella_enterica	0.5219	272.134 KB	6	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKFC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00029237 SAMN37820476-rid19923313.denovo.01, whole genome shotgun sequence	384071..384508	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKFC010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00029237 SAMN37820476-rid19923313.guided.19, whole genome shotgun sequence	14661..15098	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQKFC010000014.1	39581..40450	99.655	870	0						
GCA_032939515.1_PDT001949986.1_genomic.fna	Salmonella_enterica	0.5222	184.788 KB	9	aroC_16,dnaN_487,hemD_20,hisD_18,purE_8,sucA_447,thrA_18	2299	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_487	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_447	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKEZ010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00029162 SAMN37820474-rid19923883.denovo.06, whole genome shotgun sequence	135711..136148	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQKEZ010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00029162 SAMN37820474-rid19923883.guided.36, whole genome shotgun sequence	14367..14804	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKEZ010000008.1	150235..151101	98.966	870	0						
GCA_032939535.1_PDT001949985.1_genomic.fna	Salmonella_enterica	0.522	399.632 KB	5	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKFA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00029176 SAMN37820475-rid19921883.denovo.01, whole genome shotgun sequence	136723..137160	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQKFA010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00029176 SAMN37820475-rid19921883.guided.21, whole genome shotgun sequence	3769..4206	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKFA010000008.1	104777..105643	99.08	870	0						
GCA_032939555.1_PDT001949983.1_genomic.fna	Salmonella_enterica	0.5215	84.266 KB	19	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_430,thrA_8	1939	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_430	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKFD010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00029268 SAMN37820477-rid19918963.denovo.09, whole genome shotgun sequence	51690..52127	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKFD010000098.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00029268 SAMN37820477-rid19918963.guided.22, whole genome shotgun sequence	14523..14960	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	ColRNAI	90.08	131 / 130	DAQKFD010000079.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00029268 SAMN37820477-rid19918963.denovo.82, whole genome shotgun sequence	3981..4111																																																																	
GCA_032939575.1_PDT001949982.1_genomic.fna	Salmonella_enterica	0.5216	166.284 KB	9	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI1-I(Alpha),IncL	aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQKFE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00029270 SAMN37820478-rid19923303.denovo.01, whole genome shotgun sequence	83183..83620	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQKFE010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00029270 SAMN37820478-rid19923303.guided.19, whole genome shotgun sequence	14107..14544	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	DAQKFE010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00029270 SAMN37820478-rid19923303.denovo.22, whole genome shotgun sequence	69087..69228	enterobacteriales	IncL	96.69	664 / 661	DAQKFE010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00029270 SAMN37820478-rid19923303.denovo.28, whole genome shotgun sequence	37098..37760																																																avrA	DAQKFE010000003.1	95271..96140	99.425	870	0						
GCA_032939595.1_PDT001949981.1_genomic.fna	Salmonella_enterica	0.5171	94.668 KB	16	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pN55391)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	DAQKFG010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00029305 SAMN37820479-rid19924543.denovo.023, whole genome shotgun sequence	59289..59726	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	DAQKFG010000114.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00029305 SAMN37820479-rid19924543.guided.061, whole genome shotgun sequence	15704..16141	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pN55391)	99.64	560 / 560	DAQKFG010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00029305 SAMN37820479-rid19924543.denovo.031, whole genome shotgun sequence	15502..16061																																																						avrA	DAQKFG010000005.1	119445..120314	99.31	870	0						
GCA_032939615.1_PDT001949979.1_genomic.fna	Salmonella_enterica	0.5222	96.762 KB	18	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	-:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	-	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQKFH010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00029435 SAMN37820481-rid19925953.denovo.28, whole genome shotgun sequence	12492..12929	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQKFH010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Stanley isolate AUSMDU00029435 SAMN37820481-rid19925953.guided.49, whole genome shotgun sequence	15628..16065	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKFH010000007.1	94849..95715	99.08	870	0						
GCA_032939635.1_PDT001949980.1_genomic.fna	Salmonella_enterica	0.5212	115.157 KB	13	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_430,thrA_8	1939	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_430	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKFF010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00029401 SAMN37820480-rid19920533.denovo.04, whole genome shotgun sequence	65165..65602	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKFF010000074.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00029401 SAMN37820480-rid19920533.guided.30, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	ColRNAI	90.08	131 / 130	DAQKFF010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00029401 SAMN37820480-rid19920533.denovo.64, whole genome shotgun sequence	3981..4111																																																																	
GCA_032939655.1_PDT001949978.1_genomic.fna	Salmonella_enterica	0.522	234.127 KB	7	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQKFJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00029462 SAMN37820482-rid19918953.denovo.01, whole genome shotgun sequence	387536..387973	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQKFJ010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Saintpaul isolate AUSMDU00029462 SAMN37820482-rid19918953.guided.13, whole genome shotgun sequence	24988..25425	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQKFJ010000005.1	106073..106942	99.77	870	0						
GCA_032939675.1_PDT001949976.1_genomic.fna	Salmonella_enterica	0.5203	230.856 KB	6	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQKFL010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00021909 SAMN37820223-rid19923873.denovo.02, whole genome shotgun sequence	519041..519478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQKFL010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Muenchen isolate AUSMDU00021909 SAMN37820223-rid19923873.guided.20, whole genome shotgun sequence	19716..20153	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKFL010000006.1	140045..140914	99.425	870	0						
GCA_032939695.1_PDT001949977.1_genomic.fna	Salmonella_enterica	0.522	174.717 KB	7	aroC_117,dnaN_14,hemD_23,hisD_127,purE_6,sucA_7,thrA_22	462	-:k:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_117	dnaN	100	100	dnaN_14	hemD	100	100	hemD_23	hisD	100	100	hisD_127	purE	100	100	purE_6	sucA	100	100	sucA_7	thrA	100	100	thrA_22	-	k	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	DAQKFI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00029463 SAMN37820483-rid19925943.denovo.01, whole genome shotgun sequence	684420..684857	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	DAQKFI010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Singapore isolate AUSMDU00029463 SAMN37820483-rid19925943.guided.30, whole genome shotgun sequence	14814..15251	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQKFI010000010.1	121495..122364	99.77	870	0						
GCA_032939715.1_PDT001949975.1_genomic.fna	Salmonella_enterica	0.5211	141.372 KB	12	aroC_110,dnaN_167,hemD_135,hisD_202,purE_166,sucA_45,thrA_102	558	-:k:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_110	dnaN	100	100	dnaN_167	hemD	100	100	hemD_135	hisD	100	100	hisD_202	purE	100	100	purE_166	sucA	100	100	sucA_45	thrA	100	100	thrA_102	-	k	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:k:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQKFK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029473 SAMN37820484-rid19921873.denovo.01, whole genome shotgun sequence	15511..15948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQKFK010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029473 SAMN37820484-rid19921873.guided.38, whole genome shotgun sequence	15715..16152	Amikacin, Tobramycin	NC_003197	fosA7	98.11	424/423	DAQKFK010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029473 SAMN37820484-rid19921873.denovo.11, whole genome shotgun sequence	16813..17236	Fosfomycin	LAPJ01000014	fosA7	98.11	424/423	DAQKFK010000071.1 TPA_asm: Salmonella enterica subsp. enterica serovar Orientalis isolate AUSMDU00029473 SAMN37820484-rid19921873.guided.47, whole genome shotgun sequence	9545..9968	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKFK010000004.1	150544..151413	99.31	870	0						
GCA_032939735.1_PDT001949972.1_genomic.fna	Salmonella_enterica	0.5211	177.823 KB	11	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_430,thrA_8	1939	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_430	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKFN010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00029530 SAMN37820487-rid19923293.denovo.11, whole genome shotgun sequence	65147..65584	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKFN010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00029530 SAMN37820487-rid19923293.guided.45, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	ColRNAI	90.08	131 / 130	DAQKFN010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Paratyphi A isolate AUSMDU00029530 SAMN37820487-rid19923293.denovo.53, whole genome shotgun sequence	3981..4111																																																																	
GCA_032939755.1_PDT001949973.1_genomic.fna	Salmonella_enterica	0.5226	151.409 KB	9	aroC_5,dnaN_14,hemD_6,hisD_12,purE_5,sucA_14,thrA_58	166	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_14	thrA	100	100	thrA_58	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	DAQKFM010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00029478 SAMN37820486-rid19920523.denovo.09, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	DAQKFM010000049.1 TPA_asm: Salmonella enterica subsp. enterica serovar Newport isolate AUSMDU00029478 SAMN37820486-rid19920523.guided.35, whole genome shotgun sequence	15770..16207	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKFM010000001.1	554716..555585	99.655	870	0						
GCA_032939775.1_PDT001949971.1_genomic.fna	Salmonella_enterica	0.5213	326.294 KB	6	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I,Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	DAQKFO010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00029545 SAMN37820488-rid19924533.denovo.10, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	DAQKFO010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00029545 SAMN37820488-rid19924533.guided.22, whole genome shotgun sequence	18874..19311	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	DAQKFO010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00029545 SAMN37820488-rid19924533.denovo.37, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440I	90.27	113 / 114	DAQKFO010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Ohio isolate AUSMDU00029545 SAMN37820488-rid19924533.denovo.38, whole genome shotgun sequence	3345..3457																																																											
GCA_032939795.1_PDT001949970.1_genomic.fna	Salmonella_enterica	0.5223	200.724 KB	8	aroC_13,dnaN_109,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	515	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	DAQKFP010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00029614 SAMN37820489-rid19920513.denovo.02, whole genome shotgun sequence	259683..260120	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	DAQKFP010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Johannesburg isolate AUSMDU00029614 SAMN37820489-rid19920513.guided.25, whole genome shotgun sequence	14870..15307	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQKFP010000006.1	94223..95092	99.425	870	0						
GCA_032940215.1_PDT001949279.1_genomic.fna	Salmonella_enterica	0.5213	469.969 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFJH010000001.1 Salmonella enterica strain PNUSAS393743 SAMN37898913-rid19918703.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFJH010000029.1 Salmonella enterica strain PNUSAS393743 SAMN37898913-rid19918703.guided.20, whole genome shotgun sequence	11565..12002	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFJH010000015.1 Salmonella enterica strain PNUSAS393743 SAMN37898913-rid19918703.denovo.15, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABOFJH010000015.1 Salmonella enterica strain PNUSAS393743 SAMN37898913-rid19918703.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOFJH010000007.1	175109..175978	99.54	870	0						
GCA_032940655.1_PDT001949261.1_genomic.fna	Salmonella_enterica	0.5218	83.42 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFJX010000010.1 Salmonella enterica strain PNUSAS394147 SAMN37909474-rid19918223.denovo.010, whole genome shotgun sequence	56520..56957	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFJX010000125.1 Salmonella enterica strain PNUSAS394147 SAMN37909474-rid19918223.guided.061, whole genome shotgun sequence	24942..25379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABOFJX010000091.1 Salmonella enterica strain PNUSAS394147 SAMN37909474-rid19918223.denovo.094, whole genome shotgun sequence	483..636																																																						avrA	ABOFJX010000013.1	94139..95007	99.77	870	0						
GCA_032940675.1_PDT001949262.1_genomic.fna	Salmonella_enterica	0.522	57.406 KB	24	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	Col440I,ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFJV010000054.1 Salmonella enterica strain PNUSAS394145 SAMN37909473-rid19918593.denovo.054, whole genome shotgun sequence	15479..15916	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFJV010000122.1 Salmonella enterica strain PNUSAS394145 SAMN37909473-rid19918593.denovo.125, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFJV010000122.1 Salmonella enterica strain PNUSAS394145 SAMN37909473-rid19918593.denovo.125, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOFJV010000158.1 Salmonella enterica strain PNUSAS394145 SAMN37909473-rid19918593.guided.120, whole genome shotgun sequence	3415..3852	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFJV010000159.1 Salmonella enterica strain PNUSAS394145 SAMN37909473-rid19918593.guided.131, whole genome shotgun sequence	1976..2812	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFJV010000159.1 Salmonella enterica strain PNUSAS394145 SAMN37909473-rid19918593.guided.131, whole genome shotgun sequence	1173..1976	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOFJV010000133.1 Salmonella enterica strain PNUSAS394145 SAMN37909473-rid19918593.denovo.139, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFJV010000161.1 Salmonella enterica strain PNUSAS394145 SAMN37909473-rid19918593.guided.137, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOFJV010000122.1 Salmonella enterica strain PNUSAS394145 SAMN37909473-rid19918593.denovo.125, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOFJV010000159.1 Salmonella enterica strain PNUSAS394145 SAMN37909473-rid19918593.guided.131, whole genome shotgun sequence	297..1112	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOFJV010000100.1 Salmonella enterica strain PNUSAS394145 SAMN37909473-rid19918593.denovo.101, whole genome shotgun sequence	2289..3494	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFJV010000160.1 Salmonella enterica strain PNUSAS394145 SAMN37909473-rid19918593.guided.132, whole genome shotgun sequence	1241..2446	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col440I	93.64	110 / 114	ABOFJV010000126.1 Salmonella enterica strain PNUSAS394145 SAMN37909473-rid19918593.denovo.129, whole genome shotgun sequence	1566..1675	enterobacteriales	ColRNAI	90.08	131 / 130	ABOFJV010000120.1 Salmonella enterica strain PNUSAS394145 SAMN37909473-rid19918593.denovo.123, whole genome shotgun sequence	3981..4111																																																avrA	ABOFJV010000005.1	61658..62527	99.885	870	0						
GCA_032940725.1_PDT001949260.1_genomic.fna	Salmonella_enterica	0.5214	61.984 KB	24	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	4	aac(6')-Iaa,aac(6')-Iaa,blaTEM-57,blaTEM-1B,blaTEM-57,blaTEM-1B,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFJZ010000007.1 Salmonella enterica strain PNUSAS394144 SAMN37909475-rid19918583.denovo.007, whole genome shotgun sequence	25615..26052	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFJZ010000131.1 Salmonella enterica strain PNUSAS394144 SAMN37909475-rid19918583.guided.070, whole genome shotgun sequence	5121..5558	Amikacin, Tobramycin	NC_003197	blaTEM-57	99.88	861/861	ABOFJZ010000040.1 Salmonella enterica strain PNUSAS394144 SAMN37909475-rid19918583.denovo.040, whole genome shotgun sequence	10233..11093	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ405211	blaTEM-1B	99.88	861/861	ABOFJZ010000040.1 Salmonella enterica strain PNUSAS394144 SAMN37909475-rid19918583.denovo.040, whole genome shotgun sequence	10233..11093	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-57	99.88	861/861	ABOFJZ010000134.1 Salmonella enterica strain PNUSAS394144 SAMN37909475-rid19918583.guided.099, whole genome shotgun sequence	7029..7889	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ405211	blaTEM-1B	99.88	861/861	ABOFJZ010000134.1 Salmonella enterica strain PNUSAS394144 SAMN37909475-rid19918583.guided.099, whole genome shotgun sequence	7029..7889	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	99.92	1200/1200	ABOFJZ010000040.1 Salmonella enterica strain PNUSAS394144 SAMN37909475-rid19918583.denovo.040, whole genome shotgun sequence	12007..13206	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOFJZ010000135.1 Salmonella enterica strain PNUSAS394144 SAMN37909475-rid19918583.guided.117, whole genome shotgun sequence	807..2006	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFJZ010000064.1 Salmonella enterica strain PNUSAS394144 SAMN37909475-rid19918583.denovo.064, whole genome shotgun sequence	14564..15206	enterobacteriales	IncFII(S)	100	262 / 262	ABOFJZ010000049.1 Salmonella enterica strain PNUSAS394144 SAMN37909475-rid19918583.denovo.049, whole genome shotgun sequence	3859..4120		enterobacteriales	IncX1	95.76	377 / 377	ABOFJZ010000040.1 Salmonella enterica strain PNUSAS394144 SAMN37909475-rid19918583.denovo.040, whole genome shotgun sequence	134..510																																									avrA	ABOFJZ010000003.1	43545..44414	99.54	870	0						
GCA_032940865.1_PDT001949257.1_genomic.fna	Salmonella_enterica	0.5232	48.201 KB	29	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOFKA010000054.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314601 SAMN37909541-rid19918563.denovo.054, whole genome shotgun sequence	11351..11788	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOFKA010000188.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22314601 SAMN37909541-rid19918563.guided.080, whole genome shotgun sequence	8858..9295	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFKA010000006.1	61544..62413	99.77	870	0						
GCA_032940885.1_PDT001949256.1_genomic.fna	Salmonella_enterica	0.5223	47.203 KB	34	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		5	Col(pHAD28),Col156,Col440I,ColpVC,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFKC010000045.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314603 SAMN37909543-rid19918203.denovo.045, whole genome shotgun sequence	20871..21308	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFKC010000201.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314603 SAMN37909543-rid19918203.guided.069, whole genome shotgun sequence	15609..16046	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOFKC010000134.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314603 SAMN37909543-rid19918203.denovo.138, whole genome shotgun sequence	2102..3247	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOFKC010000205.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314603 SAMN37909543-rid19918203.guided.139, whole genome shotgun sequence	2123..3268	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOFKC010000105.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314603 SAMN37909543-rid19918203.denovo.108, whole genome shotgun sequence	59..874	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOFKC010000206.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314603 SAMN37909543-rid19918203.guided.142, whole genome shotgun sequence	22..837	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOFKC010000105.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314603 SAMN37909543-rid19918203.denovo.108, whole genome shotgun sequence	3051..4250	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFKC010000206.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314603 SAMN37909543-rid19918203.guided.142, whole genome shotgun sequence	3014..4213	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFKC010000147.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314603 SAMN37909543-rid19918203.denovo.153, whole genome shotgun sequence	3134..3264	enterobacteriales	Col156	97.37	152 / 154	ABOFKC010000145.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314603 SAMN37909543-rid19918203.denovo.151, whole genome shotgun sequence	643..794		enterobacteriales	Col440I	93.81	113 / 114	ABOFKC010000156.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314603 SAMN37909543-rid19918203.denovo.162, whole genome shotgun sequence	2528..2639		enterobacteriales	ColpVC	98.96	193 / 193	ABOFKC010000168.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314603 SAMN37909543-rid19918203.denovo.174, whole genome shotgun sequence	805..997		enterobacteriales	IncC	100	417 / 417	ABOFKC010000139.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314603 SAMN37909543-rid19918203.denovo.145, whole genome shotgun sequence	1580..1996																											avrA	ABOFKC010000003.1	83918..84787	99.885	870	0						
GCA_032940915.1_PDT001949255.1_genomic.fna	Salmonella_enterica	0.5233	64.944 KB	23	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFKB010000062.1 Salmonella enterica subsp. enterica serovar London strain FSIS22314600 SAMN37909540-rid19918553.denovo.062, whole genome shotgun sequence	11350..11787	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFKB010000143.1 Salmonella enterica subsp. enterica serovar London strain FSIS22314600 SAMN37909540-rid19918553.guided.085, whole genome shotgun sequence	14097..14534	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOFKB010000105.1 Salmonella enterica subsp. enterica serovar London strain FSIS22314600 SAMN37909540-rid19918553.denovo.108, whole genome shotgun sequence	557..687	enterobacteriales	ColRNAI	90.83	109 / 130	ABOFKB010000096.1 Salmonella enterica subsp. enterica serovar London strain FSIS22314600 SAMN37909540-rid19918553.denovo.099, whole genome shotgun sequence	1016..1124																																																avrA	ABOFKB010000035.1	2355..3224	99.425	870	0						
GCA_032940935.1_PDT001949254.1_genomic.fna	Salmonella_enterica	0.5227	67.835 KB	25	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFKG010000022.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314605 SAMN37909544-rid19918543.denovo.022, whole genome shotgun sequence	16049..16486	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFKG010000165.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314605 SAMN37909544-rid19918543.guided.128, whole genome shotgun sequence	450..887	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFKG010000098.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314605 SAMN37909544-rid19918543.denovo.099, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABOFKG010000116.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314605 SAMN37909544-rid19918543.denovo.118, whole genome shotgun sequence	3162..3423																																																avrA	ABOFKG010000002.1	81622..82491	99.54	870	0						
GCA_032941045.1_PDT001949252.1_genomic.fna	Salmonella_enterica	0.5227	61.716 KB	23	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFKH010000051.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314606 SAMN37909545-rid19918523.denovo.051, whole genome shotgun sequence	20203..20640	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFKH010000142.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314606 SAMN37909545-rid19918523.guided.066, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFKH010000118.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314606 SAMN37909545-rid19918523.denovo.121, whole genome shotgun sequence	1273..1915	enterobacteriales	IncFII(S)	100	262 / 262	ABOFKH010000100.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314606 SAMN37909545-rid19918523.denovo.103, whole genome shotgun sequence	3226..3487																																																avrA	ABOFKH010000001.1	98262..99131	99.54	870	0						
GCA_032941135.1_PDT001949247.1_genomic.fna	Salmonella_enterica	0.5207	128.151 KB	12	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	3	Col(pHAD28),IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFKI010000016.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.denovo.16, whole genome shotgun sequence	89384..89821	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOFKI010000046.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.denovo.47, whole genome shotgun sequence	6190..6992	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOFKI010000046.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.denovo.47, whole genome shotgun sequence	6190..6993	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOFKI010000046.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.denovo.47, whole genome shotgun sequence	6190..6993	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOFKI010000046.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.denovo.47, whole genome shotgun sequence	6190..6993	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOFKI010000046.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.denovo.47, whole genome shotgun sequence	5450..6190	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOFKI010000046.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.denovo.47, whole genome shotgun sequence	5450..6190	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABOFKI010000097.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.guided.59, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOFKI010000098.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.guided.63, whole genome shotgun sequence	2617..3419	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOFKI010000098.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.guided.63, whole genome shotgun sequence	2616..3419	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOFKI010000098.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.guided.63, whole genome shotgun sequence	2616..3419	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOFKI010000098.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.guided.63, whole genome shotgun sequence	2616..3419	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOFKI010000098.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.guided.63, whole genome shotgun sequence	3419..4159	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOFKI010000098.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.guided.63, whole genome shotgun sequence	3419..4159	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.15	113 / 131	ABOFKI010000069.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.denovo.73, whole genome shotgun sequence	1410..1522	enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOFKI010000064.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.denovo.68, whole genome shotgun sequence	1834..2515		enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABOFKI010000035.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310431 SAMN37909490-rid19918483.denovo.36, whole genome shotgun sequence	5067..5563																																									avrA	ABOFKI010000018.1	97216..98085	98.966	870	0						
GCA_032941185.1_PDT001949248.1_genomic.fna	Salmonella_enterica	0.5222	81.568 KB	19	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFKJ010000049.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS32310427 SAMN37909486-rid19918493.denovo.049, whole genome shotgun sequence	15448..15885	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFKJ010000119.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS32310427 SAMN37909486-rid19918493.guided.051, whole genome shotgun sequence	15467..15904	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOFKJ010000083.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS32310427 SAMN37909486-rid19918493.denovo.086, whole genome shotgun sequence	4585..5118																																																						avrA	ABOFKJ010000012.1	61400..62270	99.196	871	0						
GCA_032941235.1_PDT001949246.1_genomic.fna	Salmonella_enterica	0.5183	97.348 KB	18	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	4	IncHI2,IncHI2A,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFKK010000022.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310429 SAMN37909488-rid19918473.denovo.022, whole genome shotgun sequence	52256..52693	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFKK010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310429 SAMN37909488-rid19918473.denovo.060, whole genome shotgun sequence	2754..3590	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOFKK010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310429 SAMN37909488-rid19918473.denovo.060, whole genome shotgun sequence	1952..2754	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOFKK010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310429 SAMN37909488-rid19918473.denovo.060, whole genome shotgun sequence	1951..2754	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOFKK010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310429 SAMN37909488-rid19918473.denovo.060, whole genome shotgun sequence	1951..2754	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOFKK010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310429 SAMN37909488-rid19918473.denovo.060, whole genome shotgun sequence	1951..2754	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABOFKK010000171.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310429 SAMN37909488-rid19918473.guided.063, whole genome shotgun sequence	2795..3631	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOFKK010000171.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310429 SAMN37909488-rid19918473.guided.063, whole genome shotgun sequence	1993..2795	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOFKK010000171.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310429 SAMN37909488-rid19918473.guided.063, whole genome shotgun sequence	1992..2795	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOFKK010000171.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310429 SAMN37909488-rid19918473.guided.063, whole genome shotgun sequence	1992..2795	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOFKK010000171.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310429 SAMN37909488-rid19918473.guided.063, whole genome shotgun sequence	1992..2795	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABOFKK010000172.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310429 SAMN37909488-rid19918473.guided.069, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOFKK010000067.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310429 SAMN37909488-rid19918473.denovo.071, whole genome shotgun sequence	12764..13090	enterobacteriales	IncHI2A	99.37	630 / 630	ABOFKK010000066.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310429 SAMN37909488-rid19918473.denovo.070, whole genome shotgun sequence	13594..14223		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOFKK010000077.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310429 SAMN37909488-rid19918473.denovo.081, whole genome shotgun sequence	351..492		enterobacteriales	IncX1	100	373 / 373	ABOFKK010000108.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310429 SAMN37909488-rid19918473.denovo.112, whole genome shotgun sequence	1856..2228																																		avrA	ABOFKK010000035.1	39484..40353	99.655	870	0						
GCA_032941305.1_PDT001949245.1_genomic.fna	Salmonella_enterica	0.5227	183.344 KB	8	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(Yp)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFKN010000001.1 Salmonella enterica subsp. enterica serovar Braenderup strain FSIS32310430 SAMN37909489-rid19918463.denovo.01, whole genome shotgun sequence	454798..455235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFKN010000066.1 Salmonella enterica subsp. enterica serovar Braenderup strain FSIS32310430 SAMN37909489-rid19918463.guided.36, whole genome shotgun sequence	30340..30777	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	92.64	231 / 230	ABOFKN010000035.1 Salmonella enterica subsp. enterica serovar Braenderup strain FSIS32310430 SAMN37909489-rid19918463.denovo.38, whole genome shotgun sequence	10023..10251																																																						avrA	ABOFKN010000005.1	76686..77555	98.966	870	0						
GCA_032941355.1_PDT001949244.1_genomic.fna	Salmonella_enterica	0.5215	143.51 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	8	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,blaCMY-2,blaCMY-2,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		2	ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFKO010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.denovo.01, whole genome shotgun sequence	224072..224509	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOFKO010000048.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.denovo.49, whole genome shotgun sequence	12506..13408	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABOFKO010000048.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.denovo.49, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABOFKO010000083.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.guided.47, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOFKO010000088.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.guided.66, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABOFKO010000089.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.guided.72, whole genome shotgun sequence	3505..4296	Spectinomycin, Streptomycin	JQ414041	blaCMY-2	100	1146/1146	ABOFKO010000054.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.denovo.56, whole genome shotgun sequence	12213..13358	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOFKO010000090.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.guided.79, whole genome shotgun sequence	157..1302	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOFKO010000040.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.denovo.40, whole genome shotgun sequence	23461..24276	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOFKO010000048.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.denovo.49, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul2	100	816/816	ABOFKO010000086.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.guided.62, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOFKO010000087.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.guided.64, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABOFKO010000040.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.denovo.40, whole genome shotgun sequence	26453..27652	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABOFKO010000075.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.denovo.84, whole genome shotgun sequence	101..1291	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABOFKO010000086.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.guided.62, whole genome shotgun sequence	4544..5743	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABOFKO010000091.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.guided.81, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	ColpVC	98.96	193 / 193	ABOFKO010000074.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.denovo.83, whole genome shotgun sequence	805..997	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOFKO010000058.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310432 SAMN37909491-rid19918453.denovo.60, whole genome shotgun sequence	4397..4538																																																avrA	ABOFKO010000005.1	108304..109173	99.885	870	0						
GCA_032941405.1_PDT001949243.1_genomic.fna	Salmonella_enterica	0.522	67.2 KB	23	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),ColpVC,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFKM010000012.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310428 SAMN37909487-rid19918443.denovo.012, whole genome shotgun sequence	15466..15903	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFKM010000137.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310428 SAMN37909487-rid19918443.guided.077, whole genome shotgun sequence	7285..7722	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABOFKM010000024.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310428 SAMN37909487-rid19918443.denovo.024, whole genome shotgun sequence	23476..24291	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOFKM010000139.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310428 SAMN37909487-rid19918443.guided.103, whole genome shotgun sequence	1593..2408	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOFKM010000024.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310428 SAMN37909487-rid19918443.denovo.024, whole genome shotgun sequence	26468..27667	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFKM010000139.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310428 SAMN37909487-rid19918443.guided.103, whole genome shotgun sequence	4585..5784	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOFKM010000105.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310428 SAMN37909487-rid19918443.denovo.109, whole genome shotgun sequence	2620..2750	enterobacteriales	ColpVC	98.96	193 / 193	ABOFKM010000116.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310428 SAMN37909487-rid19918443.denovo.120, whole genome shotgun sequence	805..997		enterobacteriales	IncC	100	417 / 417	ABOFKM010000079.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310428 SAMN37909487-rid19918443.denovo.081, whole genome shotgun sequence	3283..3699																																									avrA	ABOFKM010000005.1	105027..105896	99.885	870	0						
GCA_032941475.1_PDT001949241.1_genomic.fna	Salmonella_enterica	0.5223	82.921 KB	20	aroC_17,dnaN_18,hemD_22,hisD_17*,purE_5,sucA_21,thrA_19	32*	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	99.8003992015968	100	hisD_17*	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFKP010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310424 SAMN37909482-rid19918183.denovo.001, whole genome shotgun sequence	232603..233040	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFKP010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310424 SAMN37909482-rid19918183.denovo.079, whole genome shotgun sequence	11972..12763	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFKP010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310424 SAMN37909482-rid19918183.denovo.079, whole genome shotgun sequence	11972..12763	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOFKP010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310424 SAMN37909482-rid19918183.denovo.113, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOFKP010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310424 SAMN37909482-rid19918183.denovo.113, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOFKP010000144.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310424 SAMN37909482-rid19918183.guided.062, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFKP010000147.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310424 SAMN37909482-rid19918183.guided.106, whole genome shotgun sequence	1018..1809	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFKP010000147.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310424 SAMN37909482-rid19918183.guided.106, whole genome shotgun sequence	1018..1809	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOFKP010000148.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310424 SAMN37909482-rid19918183.guided.119, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOFKP010000148.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310424 SAMN37909482-rid19918183.guided.119, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABOFKP010000076.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310424 SAMN37909482-rid19918183.denovo.079, whole genome shotgun sequence	10628..11467	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFKP010000147.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310424 SAMN37909482-rid19918183.guided.106, whole genome shotgun sequence	2314..3153	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOFKP010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310424 SAMN37909482-rid19918183.denovo.096, whole genome shotgun sequence	1837..3036	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFKP010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310424 SAMN37909482-rid19918183.guided.095, whole genome shotgun sequence	1832..3031	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOFKP010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310424 SAMN37909482-rid19918183.denovo.090, whole genome shotgun sequence	5329..5888																																																						avrA	ABOFKP010000014.1	61405..62274	99.655	870	0						
GCA_032941525.1_PDT001949240.1_genomic.fna	Salmonella_enterica	0.523	49.843 KB	31	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFKR010000057.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310426 SAMN37909484-rid19918423.denovo.058, whole genome shotgun sequence	12523..12960	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFKR010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310426 SAMN37909484-rid19918423.denovo.075, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFKR010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310426 SAMN37909484-rid19918423.denovo.075, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOFKR010000231.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310426 SAMN37909484-rid19918423.guided.119, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFKR010000232.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310426 SAMN37909484-rid19918423.guided.135, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFKR010000232.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310426 SAMN37909484-rid19918423.guided.135, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOFKR010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310426 SAMN37909484-rid19918423.denovo.075, whole genome shotgun sequence	17100..17939	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFKR010000232.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310426 SAMN37909484-rid19918423.guided.135, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOFKR010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310426 SAMN37909484-rid19918423.denovo.075, whole genome shotgun sequence	3384..4583	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFKR010000233.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310426 SAMN37909484-rid19918423.guided.148, whole genome shotgun sequence	2125..3324	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOFKR010000122.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310426 SAMN37909484-rid19918423.denovo.125, whole genome shotgun sequence	5613..6172																																																						avrA	ABOFKR010000020.1	61401..62270	99.655	870	0						
GCA_032941555.1_PDT001949239.1_genomic.fna	Salmonella_enterica	0.5232	60.897 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFKS010000019.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310425 SAMN37909483-rid19918413.denovo.019, whole genome shotgun sequence	12479..12916	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOFKS010000144.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310425 SAMN37909483-rid19918413.guided.105, whole genome shotgun sequence	7483..7920	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFKS010000005.1	81701..82570	99.655	870	0						
GCA_032941935.1_PDT001949228.1_genomic.fna	Salmonella_enterica	0.5209	267.261 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	11	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aadA2,aac(6')-Iaa,aadA2,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul1,sul1,sul2,tet(B),tet(B),dfrA12,dfrA12	0		4	Col(pHAD28),IncFIA,IncFIB(AP001918),IncFII(pCoo)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFLD010000001.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.denovo.01, whole genome shotgun sequence	569585..570022	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFLD010000035.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.denovo.38, whole genome shotgun sequence	5367..6203	Streptomycin	M28829	aph(3')-Ia	99.88	816/816	ABOFLD010000035.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.denovo.38, whole genome shotgun sequence	4216..5031	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin	EF015636	aph(3'')-Ib	100	804/804	ABOFLD010000035.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.denovo.38, whole genome shotgun sequence	6203..7006	Streptomycin	AF321551	aadA2	100	792/792	ABOFLD010000045.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.denovo.49, whole genome shotgun sequence	1921..2712	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	100	438/438	ABOFLD010000068.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.guided.14, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOFLD010000071.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.guided.48, whole genome shotgun sequence	1403..2194	Spectinomycin, Streptomycin	JQ364967	aph(3')-Ia	99.88	816/816	ABOFLD010000072.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.guided.61, whole genome shotgun sequence	334..1149	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin	EF015636	aph(6)-Id	100	837/837	ABOFLD010000074.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.guided.64, whole genome shotgun sequence	836..1672	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFLD010000074.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.guided.64, whole genome shotgun sequence	33..836	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOFLD010000057.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.denovo.63, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFLD010000077.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.guided.68, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABOFLD010000054.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.denovo.58, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOFLD010000073.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.guided.62, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABOFLD010000035.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.denovo.38, whole genome shotgun sequence	7067..7882	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABOFLD010000045.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.denovo.49, whole genome shotgun sequence	577..1416	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFLD010000071.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.guided.48, whole genome shotgun sequence	2699..3538	Sulfamethoxazole	U12338	sul2	100	816/816	ABOFLD010000078.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.guided.69, whole genome shotgun sequence	303..1118	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOFLD010000075.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.guided.66, whole genome shotgun sequence	2..1207	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABOFLD010000076.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.guided.67, whole genome shotgun sequence	2..1207	Doxycycline, Tetracycline, Minocycline	AP000342	dfrA12	100	498/498	ABOFLD010000045.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.denovo.49, whole genome shotgun sequence	3120..3617	Trimethoprim	AM040708	dfrA12	100	498/498	ABOFLD010000071.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.guided.48, whole genome shotgun sequence	498..995	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	100	131 / 131	ABOFLD010000054.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.denovo.58, whole genome shotgun sequence	1150..1280	enterobacteriales	IncFIA	99.74	388 / 388	ABOFLD010000019.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.denovo.20, whole genome shotgun sequence	59635..60021		enterobacteriales	IncFIB(AP001918)	98.09	682 / 682	ABOFLD010000032.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.denovo.34, whole genome shotgun sequence	14841..15522		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	ABOFLD010000019.1 Salmonella enterica strain PNUSAS394140 SAMN37909220-rid19918313.denovo.20, whole genome shotgun sequence	125..386																																		avrA	ABOFLD010000002.1	540740..541609	99.885	870	0						
GCA_032941955.1_PDT001949227.1_genomic.fna	Salmonella_enterica	0.5213	135.682 KB	12	aroC_11,dnaN_206,hemD_38,hisD_16,purE_311,sucA_35,thrA_527	2232	4:l,v:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_206	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_311	sucA	100	100	sucA_35	thrA	100	100	thrA_527	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFLC010000020.1 Salmonella enterica strain PNUSAS394141 SAMN37909222-rid19918303.denovo.20, whole genome shotgun sequence	61630..62067	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFLC010000073.1 Salmonella enterica strain PNUSAS394141 SAMN37909222-rid19918303.guided.44, whole genome shotgun sequence	16048..16485	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABOFLC010000036.1 Salmonella enterica strain PNUSAS394141 SAMN37909222-rid19918303.denovo.37, whole genome shotgun sequence	25576..25998	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABOFLC010000075.1 Salmonella enterica strain PNUSAS394141 SAMN37909222-rid19918303.guided.50, whole genome shotgun sequence	8824..9246	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFLC010000010.1	95318..96187	99.655	870	0						
GCA_032941975.1_PDT001949229.1_genomic.fna	Salmonella_enterica	0.5205	470.316 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFLB010000001.1 Salmonella enterica strain PNUSAS394139 SAMN37909221-rid19918323.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFLB010000026.1 Salmonella enterica strain PNUSAS394139 SAMN37909221-rid19918323.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFLB010000018.1 Salmonella enterica strain PNUSAS394139 SAMN37909221-rid19918323.denovo.21, whole genome shotgun sequence	6827..7469	enterobacteriales	IncFII(S)	100	262 / 262	ABOFLB010000020.1 Salmonella enterica strain PNUSAS394139 SAMN37909221-rid19918323.denovo.23, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.93	374 / 374	ABOFLB010000014.1 Salmonella enterica strain PNUSAS394139 SAMN37909221-rid19918323.denovo.16, whole genome shotgun sequence	32004..32377																																									avrA	ABOFLB010000007.1	174780..175649	99.54	870	0						
GCA_032942295.1_PDT001949204.1_genomic.fna	Salmonella_enterica	0.5189	113.885 KB	14	aroC_62,dnaN_53,hemD_1053,hisD_60,purE_5,sucA_53,thrA_54	8374	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_1053	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFLT010000018.1 Salmonella enterica strain 23IA09CL01-S1 SAMN37908166-rid19917723.denovo.018, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFLT010000065.1 Salmonella enterica strain 23IA09CL01-S1 SAMN37908166-rid19917723.denovo.068, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFLT010000065.1 Salmonella enterica strain 23IA09CL01-S1 SAMN37908166-rid19917723.denovo.068, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOFLT010000117.1 Salmonella enterica strain 23IA09CL01-S1 SAMN37908166-rid19917723.guided.060, whole genome shotgun sequence	8297..8734	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFLT010000119.1 Salmonella enterica strain 23IA09CL01-S1 SAMN37908166-rid19917723.guided.073, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFLT010000119.1 Salmonella enterica strain 23IA09CL01-S1 SAMN37908166-rid19917723.guided.073, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOFLT010000068.1 Salmonella enterica strain 23IA09CL01-S1 SAMN37908166-rid19917723.denovo.072, whole genome shotgun sequence	1203..2408	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFLT010000118.1 Salmonella enterica strain 23IA09CL01-S1 SAMN37908166-rid19917723.guided.070, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOFLT010000049.1 Salmonella enterica strain 23IA09CL01-S1 SAMN37908166-rid19917723.denovo.051, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABOFLT010000065.1 Salmonella enterica strain 23IA09CL01-S1 SAMN37908166-rid19917723.denovo.068, whole genome shotgun sequence	1831..2092		enterobacteriales	IncFII	96.95	262 / 261	ABOFLT010000119.1 Salmonella enterica strain 23IA09CL01-S1 SAMN37908166-rid19917723.guided.073, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOFLT010000055.1 Salmonella enterica strain 23IA09CL01-S1 SAMN37908166-rid19917723.denovo.057, whole genome shotgun sequence	5959..6100		enterobacteriales	IncX1	100	373 / 373	ABOFLT010000066.1 Salmonella enterica strain 23IA09CL01-S1 SAMN37908166-rid19917723.denovo.069, whole genome shotgun sequence	2153..2525																											avrA	ABOFLT010000015.1	102634..103503	99.655	870	0						
GCA_032942315.1_PDT001949203.1_genomic.fna	Salmonella_enterica	0.5188	146.203 KB	11	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFLU010000006.1 Salmonella enterica strain 23IA09CH01-S1 SAMN37908165-rid19917713.denovo.06, whole genome shotgun sequence	86588..87025	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFLU010000050.1 Salmonella enterica strain 23IA09CH01-S1 SAMN37908165-rid19917713.denovo.53, whole genome shotgun sequence	10661..11497	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFLU010000050.1 Salmonella enterica strain 23IA09CH01-S1 SAMN37908165-rid19917713.denovo.53, whole genome shotgun sequence	11497..12300	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOFLU010000080.1 Salmonella enterica strain 23IA09CH01-S1 SAMN37908165-rid19917713.guided.37, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFLU010000081.1 Salmonella enterica strain 23IA09CH01-S1 SAMN37908165-rid19917713.guided.61, whole genome shotgun sequence	2946..3782	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFLU010000081.1 Salmonella enterica strain 23IA09CH01-S1 SAMN37908165-rid19917713.guided.61, whole genome shotgun sequence	2143..2946	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOFLU010000054.1 Salmonella enterica strain 23IA09CH01-S1 SAMN37908165-rid19917713.denovo.57, whole genome shotgun sequence	1633..2838	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFLU010000082.1 Salmonella enterica strain 23IA09CH01-S1 SAMN37908165-rid19917713.guided.63, whole genome shotgun sequence	2440..3645	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOFLU010000044.1 Salmonella enterica strain 23IA09CH01-S1 SAMN37908165-rid19917713.denovo.47, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABOFLU010000050.1 Salmonella enterica strain 23IA09CH01-S1 SAMN37908165-rid19917713.denovo.53, whole genome shotgun sequence	9777..10038		enterobacteriales	IncFII	96.95	262 / 261	ABOFLU010000081.1 Salmonella enterica strain 23IA09CH01-S1 SAMN37908165-rid19917713.guided.61, whole genome shotgun sequence	4405..4666		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOFLU010000040.1 Salmonella enterica strain 23IA09CH01-S1 SAMN37908165-rid19917713.denovo.43, whole genome shotgun sequence	16993..17134		enterobacteriales	IncX1	100	373 / 373	ABOFLU010000052.1 Salmonella enterica strain 23IA09CH01-S1 SAMN37908165-rid19917713.denovo.55, whole genome shotgun sequence	2153..2525																											avrA	ABOFLU010000021.1	83195..84064	99.655	870	0						
GCA_032942715.1_PDT001949174.1_genomic.fna	Salmonella_enterica	0.5212	421.539 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFMN010000001.1 Salmonella enterica strain 23IA08CH01-S1 SAMN37328827-rid19917573.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFMN010000032.1 Salmonella enterica strain 23IA08CH01-S1 SAMN37328827-rid19917573.guided.23, whole genome shotgun sequence	4629..5066	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFMN010000014.1 Salmonella enterica strain 23IA08CH01-S1 SAMN37328827-rid19917573.denovo.14, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOFMN010000014.1 Salmonella enterica strain 23IA08CH01-S1 SAMN37328827-rid19917573.denovo.14, whole genome shotgun sequence	4416..4677																																																avrA	ABOFMN010000008.1	175196..176065	99.54	870	0						
GCA_032942735.1_PDT001949173.1_genomic.fna	Salmonella_enterica	0.517	93.12 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncHI2,IncHI2A,IncI1-I(Alpha),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFMO010000024.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.denovo.024, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFMO010000086.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.denovo.091, whole genome shotgun sequence	4185..5021	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOFMO010000086.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.denovo.091, whole genome shotgun sequence	5021..5823	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOFMO010000086.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.denovo.091, whole genome shotgun sequence	5021..5824	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOFMO010000086.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.denovo.091, whole genome shotgun sequence	5021..5824	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOFMO010000086.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.denovo.091, whole genome shotgun sequence	5021..5824	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABOFMO010000181.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.guided.075, whole genome shotgun sequence	11565..12002	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFMO010000183.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.guided.090, whole genome shotgun sequence	2356..3192	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOFMO010000183.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.guided.090, whole genome shotgun sequence	1554..2356	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOFMO010000183.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.guided.090, whole genome shotgun sequence	1553..2356	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOFMO010000183.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.guided.090, whole genome shotgun sequence	1553..2356	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOFMO010000183.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.guided.090, whole genome shotgun sequence	1553..2356	Streptomycin	AF321550	tet(B)	100	1206/1206	ABOFMO010000050.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.denovo.050, whole genome shotgun sequence	10904..12109	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFMO010000182.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.guided.077, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOFMO010000034.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.denovo.034, whole genome shotgun sequence	28960..29286	enterobacteriales	IncHI2A	99.52	630 / 630	ABOFMO010000034.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.denovo.034, whole genome shotgun sequence	47270..47899		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOFMO010000050.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.denovo.050, whole genome shotgun sequence	4377..4518		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOFMO010000182.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.guided.077, whole genome shotgun sequence	3169..3310		enterobacteriales	IncX1	100	373 / 373	ABOFMO010000099.1 Salmonella enterica strain 23IA08CG01-S1 SAMN37328826-rid19917803.denovo.104, whole genome shotgun sequence	2218..2590																											avrA	ABOFMO010000017.1	94214..95083	99.655	870	0						
GCA_032942755.1_PDT001949172.1_genomic.fna	Salmonella_enterica	0.5219	359.483 KB	6	aroC_341,dnaN_11,hemD_8,hisD_404,purE_61,sucA_161,thrA_341	1291	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_341	dnaN	100	100	dnaN_11	hemD	100	100	hemD_8	hisD	100	100	hisD_404	purE	100	100	purE_61	sucA	100	100	sucA_161	thrA	100	100	thrA_341	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOFMP010000001.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325917 SAMN37908085-rid19917563.denovo.01, whole genome shotgun sequence	393252..393689	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOFMP010000050.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325917 SAMN37908085-rid19917563.guided.28, whole genome shotgun sequence	16445..16882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFMP010000002.1	94379..95248	98.966	870	0						
GCA_032942765.1_PDT001949171.1_genomic.fna	Salmonella_enterica	0.5215	231.371 KB	7	aroC_341,dnaN_11,hemD_8,hisD_404,purE_61,sucA_161,thrA_341	1291	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_341	dnaN	100	100	dnaN_11	hemD	100	100	hemD_8	hisD	100	100	hisD_404	purE	100	100	purE_61	sucA	100	100	sucA_161	thrA	100	100	thrA_341	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOFMQ010000001.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325916 SAMN37908084-rid19917793.denovo.01, whole genome shotgun sequence	406386..406823	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOFMQ010000049.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325916 SAMN37908084-rid19917793.guided.23, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFMQ010000008.1	39429..40298	98.966	870	0						
GCA_032942795.1_PDT001949170.1_genomic.fna	Salmonella_enterica	0.5215	391.758 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOFMR010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325915 SAMN37908083-rid19917783.denovo.01, whole genome shotgun sequence	456548..456985	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOFMR010000022.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325915 SAMN37908083-rid19917783.guided.16, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFMR010000008.1	149704..150573	99.54	870	0						
GCA_032942815.1_PDT001949169.1_genomic.fna	Salmonella_enterica	0.5212	412.241 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFMS010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325910 SAMN37908078-rid19917553.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFMS010000027.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325910 SAMN37908078-rid19917553.guided.15, whole genome shotgun sequence	29740..30177	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFMS010000018.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325910 SAMN37908078-rid19917553.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOFMS010000020.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325910 SAMN37908078-rid19917553.denovo.23, whole genome shotgun sequence	3398..3659																																																avrA	ABOFMS010000002.1	553636..554505	99.54	870	0						
GCA_032942835.1_PDT001949168.1_genomic.fna	Salmonella_enterica	0.5216	253.188 KB	7	aroC_341,dnaN_11,hemD_8,hisD_404,purE_61,sucA_161,thrA_341	1291	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_341	dnaN	100	100	dnaN_11	hemD	100	100	hemD_8	hisD	100	100	hisD_404	purE	100	100	purE_61	sucA	100	100	sucA_161	thrA	100	100	thrA_341	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOFMU010000001.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325914 SAMN37908082-rid19917543.denovo.01, whole genome shotgun sequence	101855..102292	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOFMU010000047.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325914 SAMN37908082-rid19917543.guided.27, whole genome shotgun sequence	16445..16882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFMU010000009.1	39429..40298	98.966	870	0						
GCA_032942855.1_PDT001949167.1_genomic.fna	Salmonella_enterica	0.519	152.575 KB	9	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFMT010000003.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325911 SAMN37908079-rid19917533.denovo.03, whole genome shotgun sequence	197257..197694	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFMT010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325911 SAMN37908079-rid19917533.denovo.49, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFMT010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325911 SAMN37908079-rid19917533.denovo.49, whole genome shotgun sequence	7518..8321	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOFMT010000063.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325911 SAMN37908079-rid19917533.guided.33, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFMT010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325911 SAMN37908079-rid19917533.guided.51, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFMT010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325911 SAMN37908079-rid19917533.guided.51, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOFMT010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325911 SAMN37908079-rid19917533.denovo.53, whole genome shotgun sequence	2553..3758	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFMT010000066.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325911 SAMN37908079-rid19917533.guided.55, whole genome shotgun sequence	1322..2527	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOFMT010000030.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325911 SAMN37908079-rid19917533.denovo.31, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOFMT010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325911 SAMN37908079-rid19917533.denovo.49, whole genome shotgun sequence	5798..6059		enterobacteriales	IncFII	96.95	262 / 261	ABOFMT010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325911 SAMN37908079-rid19917533.guided.51, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOFMT010000044.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325911 SAMN37908079-rid19917533.denovo.47, whole genome shotgun sequence	2153..2525																																		avrA	ABOFMT010000004.1	39612..40481	99.655	870	0						
GCA_032942875.1_PDT001949166.1_genomic.fna	Salmonella_enterica	0.5188	232.477 KB	9	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFMV010000014.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325912 SAMN37908080-rid19917773.denovo.14, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFMV010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325912 SAMN37908080-rid19917773.denovo.48, whole genome shotgun sequence	9118..9954	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOFMV010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325912 SAMN37908080-rid19917773.denovo.48, whole genome shotgun sequence	9954..10757	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOFMV010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325912 SAMN37908080-rid19917773.guided.51, whole genome shotgun sequence	8046..8483	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFMV010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325912 SAMN37908080-rid19917773.guided.60, whole genome shotgun sequence	2351..3187	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOFMV010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325912 SAMN37908080-rid19917773.guided.60, whole genome shotgun sequence	1548..2351	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOFMV010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325912 SAMN37908080-rid19917773.denovo.56, whole genome shotgun sequence	1430..2635	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFMV010000072.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325912 SAMN37908080-rid19917773.guided.62, whole genome shotgun sequence	1871..3076	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOFMV010000031.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325912 SAMN37908080-rid19917773.denovo.33, whole genome shotgun sequence	10944..11625	enterobacteriales	IncFII	96.95	262 / 261	ABOFMV010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325912 SAMN37908080-rid19917773.denovo.48, whole genome shotgun sequence	8234..8495		enterobacteriales	IncFII	96.95	262 / 261	ABOFMV010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325912 SAMN37908080-rid19917773.guided.60, whole genome shotgun sequence	3810..4071		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOFMV010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325912 SAMN37908080-rid19917773.denovo.45, whole genome shotgun sequence	5711..5852		enterobacteriales	IncX1	100	373 / 373	ABOFMV010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325912 SAMN37908080-rid19917773.denovo.54, whole genome shotgun sequence	2732..3104																											avrA	ABOFMV010000028.1	39600..40469	99.655	870	0						
GCA_032942895.1_PDT001949163.1_genomic.fna	Salmonella_enterica	0.5206	310.042 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFMY010000002.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325656 SAMN37908075-rid19917743.denovo.02, whole genome shotgun sequence	462162..462599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFMY010000041.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12325656 SAMN37908075-rid19917743.guided.19, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFMY010000001.1	581285..582154	99.195	870	0						
GCA_032942915.1_PDT001949164.1_genomic.fna	Salmonella_enterica	0.5216	252.36 KB	7	aroC_341,dnaN_11,hemD_8,hisD_404,purE_61,sucA_161,thrA_341	1291	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_341	dnaN	100	100	dnaN_11	hemD	100	100	hemD_8	hisD	100	100	hisD_404	purE	100	100	purE_61	sucA	100	100	sucA_161	thrA	100	100	thrA_341	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOFMX010000008.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325913 SAMN37908081-rid19917753.denovo.08, whole genome shotgun sequence	80095..80532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOFMX010000045.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325913 SAMN37908081-rid19917753.guided.26, whole genome shotgun sequence	15265..15702	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFMX010000010.1	39413..40282	98.966	870	0						
GCA_032942935.1_PDT001949165.1_genomic.fna	Salmonella_enterica	0.5207	265.686 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFMW010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325909 SAMN37908077-rid19917763.denovo.02, whole genome shotgun sequence	381670..382107	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFMW010000050.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325909 SAMN37908077-rid19917763.guided.26, whole genome shotgun sequence	24910..25347	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABOFMW010000021.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325909 SAMN37908077-rid19917763.denovo.21, whole genome shotgun sequence	40342..41157	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOFMW010000051.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325909 SAMN37908077-rid19917763.guided.31, whole genome shotgun sequence	27687..28502	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOFMW010000021.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325909 SAMN37908077-rid19917763.denovo.21, whole genome shotgun sequence	43334..44533	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFMW010000051.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325909 SAMN37908077-rid19917763.guided.31, whole genome shotgun sequence	30679..31878	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOFMW010000041.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325909 SAMN37908077-rid19917763.denovo.45, whole genome shotgun sequence	371..501																																																						avrA	ABOFMW010000001.1	507389..508258	99.885	870	0						
GCA_032942955.1_PDT001949162.1_genomic.fna	Salmonella_enterica	0.523	308.812 KB	5	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFMZ010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325652 SAMN37908074-rid19917523.denovo.01, whole genome shotgun sequence	791116..791553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFMZ010000032.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325652 SAMN37908074-rid19917523.guided.28, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032942975.1_PDT001949161.1_genomic.fna	Salmonella_enterica	0.5205	208.827 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFNA010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.denovo.01, whole genome shotgun sequence	460180..460617	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFNA010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.denovo.29, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFNA010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.denovo.29, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOFNA010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.denovo.50, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOFNA010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.denovo.50, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOFNA010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.guided.36, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFNA010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.guided.43, whole genome shotgun sequence	1256..2047	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFNA010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.guided.43, whole genome shotgun sequence	1256..2047	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOFNA010000057.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.guided.49, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOFNA010000057.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.guided.49, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOFNA010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.denovo.46, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOFNA010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.guided.52, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOFNA010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.denovo.29, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFNA010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.guided.43, whole genome shotgun sequence	2552..3391	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOFNA010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.denovo.29, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFNA010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.guided.44, whole genome shotgun sequence	5090..6289	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOFNA010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.denovo.45, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOFNA010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.guided.48, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOFNA010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325521 SAMN37908073-rid19917733.denovo.34, whole genome shotgun sequence	6209..6768																																																						avrA	ABOFNA010000003.1	39430..40299	99.655	870	0						
GCA_032943015.1_PDT001949159.1_genomic.fna	Salmonella_enterica	0.5219	344.898 KB	4	aroC_5,dnaN_2,hemD_42,hisD_7,purE_31,sucA_6,thrA_11	78	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_42	hisD	100	100	hisD_7	purE	100	100	purE_31	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFNC010000001.1 Salmonella enterica strain U8045s SAMN37907906-rid19917513.denovo.01, whole genome shotgun sequence	756413..756850	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFNC010000028.1 Salmonella enterica strain U8045s SAMN37907906-rid19917513.guided.21, whole genome shotgun sequence	8050..8487	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFII(S)	96.95	262 / 262	ABOFNC010000020.1 Salmonella enterica strain U8045s SAMN37907906-rid19917513.denovo.20, whole genome shotgun sequence	17475..17734																																																						avrA	ABOFNC010000008.1	140785..141654	99.54	870	0						
GCA_032943055.1_PDT001949157.1_genomic.fna	Salmonella_enterica	0.5219	403.211 KB	3	aroC_5,dnaN_2,hemD_42,hisD_7,purE_31,sucA_6,thrA_11	78	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrB_p.E466D	1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_42	hisD	100	100	hisD_7	purE	100	100	purE_31	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFNE010000001.1 Salmonella enterica strain U8047s SAMN37907661-rid19917503.denovo.01, whole genome shotgun sequence	756403..756840	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFNE010000027.1 Salmonella enterica strain U8047s SAMN37907661-rid19917503.guided.22, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrB p.E466D	GAA -> GAT	E -> D	Nalidixic Acid, Ciprofloxacin	26933021																enterobacteriales	IncFII(S)	96.95	262 / 262	ABOFNE010000020.1 Salmonella enterica strain U8047s SAMN37907661-rid19917503.denovo.20, whole genome shotgun sequence	17486..17745																																																						avrA	ABOFNE010000007.1	140458..141327	99.54	870	0						
GCA_032943075.1_PDT001949156.1_genomic.fna	Salmonella_enterica	0.5209	395.012 KB	5	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOFNF010000001.1 Salmonella enterica strain PNUSAS394107 SAMN37907920-rid19917493.denovo.01, whole genome shotgun sequence	137214..137651	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOFNF010000034.1 Salmonella enterica strain PNUSAS394107 SAMN37907920-rid19917493.guided.22, whole genome shotgun sequence	9696..10133	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFNF010000003.1	39477..40345	99.425	870	0						
GCA_032943095.1_PDT001949155.1_genomic.fna	Salmonella_enterica	0.5217	465.577 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFNG010000001.1 Salmonella enterica strain PNUSAS394127 SAMN37907617-rid19916773.denovo.01, whole genome shotgun sequence	674431..674868	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFNG010000024.1 Salmonella enterica strain PNUSAS394127 SAMN37907617-rid19916773.guided.13, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFNG010000009.1	181866..182734	99.195	870	0						
GCA_032943115.1_PDT001949153.1_genomic.fna	Salmonella_enterica	0.5209	478.31 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFNH010000001.1 Salmonella enterica strain U7034s SAMN37907657-rid19916763.denovo.01, whole genome shotgun sequence	182671..183108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFNH010000034.1 Salmonella enterica strain U7034s SAMN37907657-rid19916763.guided.25, whole genome shotgun sequence	69..506	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	ABOFNH010000015.1 Salmonella enterica strain U7034s SAMN37907657-rid19916763.denovo.15, whole genome shotgun sequence	16913..17172	enterobacteriales	IncX1	98.66	374 / 374	ABOFNH010000015.1 Salmonella enterica strain U7034s SAMN37907657-rid19916763.denovo.15, whole genome shotgun sequence	52766..53139																																																avrA	ABOFNH010000002.1	504484..505352	99.655	870	0						
GCA_032943175.1_PDT001949149.1_genomic.fna	Salmonella_enterica	0.5205	407.033 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFNI010000004.1 Salmonella enterica strain U6955s SAMN37907904-rid19917453.denovo.04, whole genome shotgun sequence	157785..158222	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFNI010000032.1 Salmonella enterica strain U6955s SAMN37907904-rid19917453.guided.19, whole genome shotgun sequence	16346..16783	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	ABOFNI010000016.1 Salmonella enterica strain U6955s SAMN37907904-rid19917453.denovo.16, whole genome shotgun sequence	16896..17155	enterobacteriales	IncX1	98.66	374 / 374	ABOFNI010000016.1 Salmonella enterica strain U6955s SAMN37907904-rid19917453.denovo.16, whole genome shotgun sequence	52749..53122																																																avrA	ABOFNI010000001.1	504411..505279	99.655	870	0						
GCA_032943215.1_PDT001949144.1_genomic.fna	Salmonella_enterica	0.5215	271.132 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFNL010000001.1 Salmonella enterica strain PNUSAS394108 SAMN37907921-rid19917423.denovo.01, whole genome shotgun sequence	560322..560759	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFNL010000031.1 Salmonella enterica strain PNUSAS394108 SAMN37907921-rid19917423.guided.26, whole genome shotgun sequence	5403..5840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFNL010000020.1	39476..40344	99.195	870	0						
GCA_032943415.1_PDT001949138.1_genomic.fna	Salmonella_enterica	0.5219	444.115 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFNW010000001.1 Salmonella enterica strain U6814s SAMN37907903-rid19916703.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFNW010000014.1 Salmonella enterica strain U6814s SAMN37907903-rid19916703.denovo.14, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFNW010000014.1 Salmonella enterica strain U6814s SAMN37907903-rid19916703.denovo.14, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOFNW010000044.1 Salmonella enterica strain U6814s SAMN37907903-rid19916703.guided.34, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFNW010000044.1 Salmonella enterica strain U6814s SAMN37907903-rid19916703.guided.34, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOFNW010000045.1 Salmonella enterica strain U6814s SAMN37907903-rid19916703.guided.35, whole genome shotgun sequence	5504..5941	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABOFNW010000014.1 Salmonella enterica strain U6814s SAMN37907903-rid19916703.denovo.14, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFNW010000044.1 Salmonella enterica strain U6814s SAMN37907903-rid19916703.guided.34, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOFNW010000014.1 Salmonella enterica strain U6814s SAMN37907903-rid19916703.denovo.14, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFNW010000046.1 Salmonella enterica strain U6814s SAMN37907903-rid19916703.guided.36, whole genome shotgun sequence	4367..5566	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOFNW010000028.1 Salmonella enterica strain U6814s SAMN37907903-rid19916703.denovo.28, whole genome shotgun sequence	10191..10750																																																						avrA	ABOFNW010000002.1	149828..150697	99.655	870	0						
GCA_032943535.1_PDT001949135.1_genomic.fna	Salmonella_enterica	0.5218	364.134 KB	5	aroC_5,dnaN_2,hemD_42,hisD_7,purE_31,sucA_6,thrA_11	78	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_42	hisD	100	100	hisD_7	purE	100	100	purE_31	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFNY010000001.1 Salmonella enterica strain U8040s SAMN37907907-rid19916683.denovo.01, whole genome shotgun sequence	766243..766680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFNY010000032.1 Salmonella enterica strain U8040s SAMN37907907-rid19916683.guided.27, whole genome shotgun sequence	3710..4147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	96.95	262 / 262	ABOFNY010000023.1 Salmonella enterica strain U8040s SAMN37907907-rid19916683.denovo.23, whole genome shotgun sequence	17504..17763																																																						avrA	ABOFNY010000008.1	140431..141300	99.54	870	0						
GCA_032943555.1_PDT001949131.1_genomic.fna	Salmonella_enterica	0.5213	245.615 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	11	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFOC010000001.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFOC010000026.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.denovo.27, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFOC010000026.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.denovo.27, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOFOC010000041.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.denovo.48, whole genome shotgun sequence	1053..2078	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOFOC010000041.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.denovo.48, whole genome shotgun sequence	48..824	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOFOC010000054.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.denovo.64, whole genome shotgun sequence	93..908	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	aadA1	99.75	792/792	ABOFOC010000061.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.guided.26, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFOC010000061.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.guided.26, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOFOC010000064.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.guided.37, whole genome shotgun sequence	6475..6912	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOFOC010000067.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.guided.47, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOFOC010000067.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.guided.47, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOFOC010000070.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.guided.61, whole genome shotgun sequence	126..941	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	blaCTX-M-65	100	876/876	ABOFOC010000042.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.denovo.50, whole genome shotgun sequence	1173..2048	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOFOC010000068.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.guided.49, whole genome shotgun sequence	1214..2089	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABOFOC010000047.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.denovo.56, whole genome shotgun sequence	320..736	Fosfomycin	AB522970	fosA3	100	417/417	ABOFOC010000069.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.guided.55, whole genome shotgun sequence	361..777	Fosfomycin	AB522970	floR	98.19	1214/1215	ABOFOC010000038.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.denovo.43, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOFOC010000065.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.guided.42, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOFOC010000026.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.denovo.27, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFOC010000061.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.guided.26, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOFOC010000026.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.denovo.27, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFOC010000061.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.guided.26, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOFOC010000035.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.denovo.39, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOFOC010000066.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.guided.44, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOFOC010000030.1 Salmonella enterica strain U8041s SAMN37907660-rid19916663.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABOFOC010000002.1	94085..94954	99.655	870	0						
GCA_032943575.1_PDT001949130.1_genomic.fna	Salmonella_enterica	0.521	405.743 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFOD010000001.1 Salmonella enterica strain U6956s SAMN37907662-rid19916653.denovo.01, whole genome shotgun sequence	803991..804428	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFOD010000031.1 Salmonella enterica strain U6956s SAMN37907662-rid19916653.guided.20, whole genome shotgun sequence	9899..10336	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	ABOFOD010000015.1 Salmonella enterica strain U6956s SAMN37907662-rid19916653.denovo.15, whole genome shotgun sequence	63435..63694	enterobacteriales	IncX1	98.66	374 / 374	ABOFOD010000015.1 Salmonella enterica strain U6956s SAMN37907662-rid19916653.denovo.15, whole genome shotgun sequence	24682..25055																																																avrA	ABOFOD010000002.1	504411..505279	99.655	870	0						
GCA_032943595.1_PDT001949129.1_genomic.fna	Salmonella_enterica	0.5147	198.613 KB	8	aroC_33,dnaN_26,hemD_30,hisD_26,purE_21,sucA_32,thrA_28	63	60:r:e,n,x,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_32	thrA	100	100	thrA_28	60	r	e,n,x,z15	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 60:r:e,n,x,z15		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOFOE010000002.1 Salmonella enterica strain U8017s SAMN37907659-rid19917353.denovo.02, whole genome shotgun sequence	380842..381279	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOFOE010000070.1 Salmonella enterica strain U8017s SAMN37907659-rid19917353.guided.42, whole genome shotgun sequence	1938..2375	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFOE010000007.1	90991..91860	96.667	870	0						
GCA_032943615.1_PDT001949128.1_genomic.fna	Salmonella_enterica	0.5225	496.405 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFOF010000001.1 Salmonella enterica strain U8073s SAMN37907663-rid19916643.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFOF010000023.1 Salmonella enterica strain U8073s SAMN37907663-rid19916643.guided.15, whole genome shotgun sequence	8854..9291	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFOF010000002.1	183449..184318	98.966	870	0						
GCA_032943655.1_PDT001949127.1_genomic.fna	Salmonella_enterica	0.5215	280.392 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFOI010000001.1 Salmonella enterica strain U6996s SAMN37907658-rid19917343.denovo.01, whole genome shotgun sequence	482195..482632	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFOI010000042.1 Salmonella enterica strain U6996s SAMN37907658-rid19917343.guided.32, whole genome shotgun sequence	1740..2177	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOFOI010000023.1 Salmonella enterica strain U6996s SAMN37907658-rid19917343.denovo.23, whole genome shotgun sequence	24670..25312	enterobacteriales	IncFII(S)	100	262 / 262	ABOFOI010000023.1 Salmonella enterica strain U6996s SAMN37907658-rid19917343.denovo.23, whole genome shotgun sequence	9324..9585																																																avrA	ABOFOI010000003.1	208393..209262	99.885	870	0						
GCA_032943675.1_PDT001949117.1_genomic.fna	Salmonella_enterica	0.5207	673.469 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFOJ010000004.1 Salmonella enterica strain PNUSAS394087 SAMN37907420-rid19916573.denovo.04, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFOJ010000040.1 Salmonella enterica strain PNUSAS394087 SAMN37907420-rid19916573.guided.13, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFOJ010000003.1	504147..505017	99.196	871	0						
GCA_032943875.1_PDT001949087.1_genomic.fna	Salmonella_enterica	0.521	489.733 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFOT010000001.1 Salmonella enterica strain PNUSAS394067 SAMN37906966-rid19916363.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFOT010000029.1 Salmonella enterica strain PNUSAS394067 SAMN37906966-rid19916363.guided.18, whole genome shotgun sequence	25842..26279	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFOT010000016.1 Salmonella enterica strain PNUSAS394067 SAMN37906966-rid19916363.denovo.17, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABOFOT010000016.1 Salmonella enterica strain PNUSAS394067 SAMN37906966-rid19916363.denovo.17, whole genome shotgun sequence	4078..4339																																																avrA	ABOFOT010000002.1	552878..553747	99.54	870	0						
GCA_032944135.1_PDT001949060.1_genomic.fna	Salmonella_enterica	0.5165	188.45 KB	9	aroC_597,dnaN_28,hemD_472,hisD_151,purE_22,sucA_29,thrA_30	2882	50:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_597	dnaN	100	100	dnaN_28	hemD	100	100	hemD_472	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABOFPB010000007.1 Salmonella enterica strain PNUSAS394048 SAMN37906956-rid19917083.denovo.07, whole genome shotgun sequence	5052..5489	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABOFPB010000065.1 Salmonella enterica strain PNUSAS394048 SAMN37906956-rid19917083.guided.46, whole genome shotgun sequence	4234..4671	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032944175.1_PDT001949059.1_genomic.fna	Salmonella_enterica	0.5214	375.879 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFPE010000001.1 Salmonella enterica strain PNUSAS394050 SAMN37906954-rid19917073.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFPE010000030.1 Salmonella enterica strain PNUSAS394050 SAMN37906954-rid19917073.guided.27, whole genome shotgun sequence	2232..2669	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFPE010000022.1 Salmonella enterica strain PNUSAS394050 SAMN37906954-rid19917073.denovo.22, whole genome shotgun sequence	18140..18782	enterobacteriales	IncFII(S)	100	262 / 262	ABOFPE010000022.1 Salmonella enterica strain PNUSAS394050 SAMN37906954-rid19917073.denovo.22, whole genome shotgun sequence	3402..3663																																																avrA	ABOFPE010000003.1	140720..141589	99.54	870	0						
GCA_032944195.1_PDT001949057.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFPG010000001.1 Salmonella enterica strain PNUSAS394052 SAMN37906908-rid19917063.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFPG010000022.1 Salmonella enterica strain PNUSAS394052 SAMN37906908-rid19917063.guided.17, whole genome shotgun sequence	9911..10348	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFPG010000016.1 Salmonella enterica strain PNUSAS394052 SAMN37906908-rid19917063.denovo.16, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOFPG010000018.1 Salmonella enterica strain PNUSAS394052 SAMN37906908-rid19917063.denovo.19, whole genome shotgun sequence	3391..3652																																																avrA	ABOFPG010000002.1	553636..554505	99.54	870	0						
GCA_032944215.1_PDT001949058.1_genomic.fna	Salmonella_enterica	0.5208	626.055 KB	3	aroC_72,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2009	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_72	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOFPF010000001.1 Salmonella enterica strain PNUSAS394049 SAMN37906955-rid19916223.denovo.01, whole genome shotgun sequence	419512..419949	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOFPF010000035.1 Salmonella enterica strain PNUSAS394049 SAMN37906955-rid19916223.guided.26, whole genome shotgun sequence	1545..1982	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFPF010000002.1	93969..94838	99.31	870	0						
GCA_032944305.1_PDT001949049.1_genomic.fna	Salmonella_enterica	0.5215	366.724 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFPI010000001.1 Salmonella enterica strain PNUSAS394054 SAMN37906906-rid19917013.denovo.01, whole genome shotgun sequence	612210..612647	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFPI010000031.1 Salmonella enterica strain PNUSAS394054 SAMN37906906-rid19917013.guided.26, whole genome shotgun sequence	574..1011	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFPI010000002.1	174562..175431	98.966	870	0						
GCA_032944325.1_PDT001949047.1_genomic.fna	Salmonella_enterica	0.5217	698.067 KB	3	aroC_11,dnaN_10,hemD_353,hisD_13,purE_40,sucA_13,thrA_4	2063	4:e,h:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_353	hisD	100	100	hisD_13	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOFPL010000002.1 Salmonella enterica strain PNUSAS394047 SAMN37906957-rid19917003.denovo.02, whole genome shotgun sequence	622411..622848	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOFPL010000024.1 Salmonella enterica strain PNUSAS394047 SAMN37906957-rid19917003.guided.21, whole genome shotgun sequence	1172..1609	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFPL010000003.1	159050..159919	99.54	870	0						
GCA_032944365.1_PDT001949048.1_genomic.fna	Salmonella_enterica	0.5229	194.908 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFPJ010000001.1 Salmonella enterica strain PNUSAS394051 SAMN37906953-rid19916183.denovo.01, whole genome shotgun sequence	460172..460609	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOFPJ010000040.1 Salmonella enterica strain PNUSAS394051 SAMN37906953-rid19916183.guided.33, whole genome shotgun sequence	125..562	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFPJ010000004.1	151256..152125	99.655	870	0						
GCA_032944385.1_PDT001949056.1_genomic.fna	Salmonella_enterica	0.5205	392.002 KB	5	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOFPH010000002.1 Salmonella enterica strain PNUSAS394053 SAMN37906907-rid19916213.denovo.02, whole genome shotgun sequence	476972..477409	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOFPH010000032.1 Salmonella enterica strain PNUSAS394053 SAMN37906907-rid19916213.guided.26, whole genome shotgun sequence	441..878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFPH010000001.1	600572..601441	99.425	870	0						
GCA_032944415.1_PDT001949003.1_genomic.fna	Salmonella_enterica	0.5213	151.275 KB	13	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFPN010000002.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.denovo.02, whole genome shotgun sequence	37972..38409	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFPN010000039.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.denovo.39, whole genome shotgun sequence	8324..9160	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFPN010000039.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.denovo.39, whole genome shotgun sequence	9160..9963	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOFPN010000075.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.denovo.83, whole genome shotgun sequence	135..950	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	V00359	aac(6')-Iaa	98.63	438/438	ABOFPN010000080.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.guided.45, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFPN010000083.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.guided.62, whole genome shotgun sequence	891..1727	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFPN010000083.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.guided.62, whole genome shotgun sequence	88..891	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOFPN010000087.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.guided.80, whole genome shotgun sequence	129..944	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside	V00359	blaCMY-2	100	1146/1146	ABOFPN010000068.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.denovo.75, whole genome shotgun sequence	116..1261	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOFPN010000086.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.guided.74, whole genome shotgun sequence	157..1302	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOFPN010000039.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.denovo.39, whole genome shotgun sequence	3975..5188	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOFPN010000084.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.guided.63, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOFPN010000039.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.denovo.39, whole genome shotgun sequence	10024..10839	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOFPN010000081.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.guided.46, whole genome shotgun sequence	26609..27424	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOFPN010000039.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.denovo.39, whole genome shotgun sequence	5789..7063	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOFPN010000083.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.guided.62, whole genome shotgun sequence	2988..4262	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABOFPN010000038.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.denovo.38, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOFPN010000029.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.denovo.29, whole genome shotgun sequence	16900..17159		enterobacteriales	IncX1	98.66	374 / 374	ABOFPN010000029.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325834 SAMN37905811-rid19915943.denovo.29, whole genome shotgun sequence	52754..53127																																									avrA	ABOFPN010000005.1	142769..143637	99.54	870	0						
GCA_032944455.1_PDT001948821.1_genomic.fna	Salmonella_enterica	0.5204	393.73 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOFPQ010000001.1 Salmonella enterica strain PNUSAS393882 SAMN37904908-rid19915023.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOFPQ010000029.1 Salmonella enterica strain PNUSAS393882 SAMN37904908-rid19915023.guided.12, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFPQ010000002.1	145182..146051	99.31	870	0						
GCA_032945115.1_PDT001774613.1_genomic.fna	Salmonella_enterica	0.5201	478.475 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFQV010000001.1 Salmonella enterica strain PNUSAS354967 SAMN35686394-rid18354453.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFQV010000028.1 Salmonella enterica strain PNUSAS354967 SAMN35686394-rid18354453.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFQV010000018.1 Salmonella enterica strain PNUSAS354967 SAMN35686394-rid18354453.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOFQV010000020.1 Salmonella enterica strain PNUSAS354967 SAMN35686394-rid18354453.denovo.23, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.93	374 / 374	ABOFQV010000014.1 Salmonella enterica strain PNUSAS354967 SAMN35686394-rid18354453.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABOFQV010000002.1	553644..554513	99.54	870	0						
GCA_032945135.1_PDT001774612.1_genomic.fna	Salmonella_enterica	0.5207	516.023 KB	4	aroC_414,dnaN_592,hemD_78,hisD_75,purE_34,sucA_626,thrA_674	Unknown	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_414	dnaN	100	100	dnaN_592	hemD	100	100	hemD_78	hisD	100	100	hisD_75	purE	100	100	purE_34	sucA	100	100	sucA_626	thrA	100	100	thrA_674	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFQW010000001.1 Salmonella enterica strain PNUSAS354964 SAMN35686391-rid18355753.denovo.01, whole genome shotgun sequence	677019..677456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOFQW010000024.1 Salmonella enterica strain PNUSAS354964 SAMN35686391-rid18355753.guided.14, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFQW010000002.1	139128..139997	99.08	870	0						
GCA_032945175.1_PDT001774611.1_genomic.fna	Salmonella_enterica	0.519	299.458 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_70,sucA_9,thrA_2	213	4:i:1,2	8	aac(6')-Iaa,aac(3)-IId,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aac(3)-IId,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		3	IncFIA(HI1),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_70	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFQX010000001.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.denovo.01, whole genome shotgun sequence	458964..459401	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABOFQX010000031.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.denovo.34, whole genome shotgun sequence	6366..7226	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(6)-Id	100	837/837	ABOFQX010000033.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.denovo.38, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFQX010000033.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.denovo.38, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOFQX010000035.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.denovo.41, whole genome shotgun sequence	137..952	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin	V00359	aac(6')-Iaa	100	438/438	ABOFQX010000041.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABOFQX010000044.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.guided.35, whole genome shotgun sequence	75..935	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(6)-Id	100	837/837	ABOFQX010000045.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.guided.37, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFQX010000045.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.guided.37, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOFQX010000047.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.guided.43, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin	V00359	blaTEM-1B	100	861/861	ABOFQX010000031.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.denovo.34, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFQX010000044.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.guided.35, whole genome shotgun sequence	5907..6767	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOFQX010000033.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.denovo.38, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOFQX010000045.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.guided.37, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOFQX010000034.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.denovo.40, whole genome shotgun sequence	1174..2379	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFQX010000046.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.guided.39, whole genome shotgun sequence	1215..2420	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	IncFIA(HI1)	100	388 / 388	ABOFQX010000018.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.denovo.19, whole genome shotgun sequence	958..1345	enterobacteriales	IncHI1A	99.76	420 / 420	ABOFQX010000019.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.denovo.21, whole genome shotgun sequence	36755..37174		enterobacteriales	IncHI1B(R27)	100	540 / 540	ABOFQX010000019.1 Salmonella enterica strain PNUSAS354969 SAMN35686388-rid18355743.denovo.21, whole genome shotgun sequence	23139..23678	R27																																								avrA	ABOFQX010000008.1	174559..175428	99.885	870	0						
GCA_032945195.1_PDT001774609.1_genomic.fna	Salmonella_enterica	0.5207	337.478 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFQZ010000001.1 Salmonella enterica strain PNUSAS354968 SAMN35686392-rid18355723.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFQZ010000037.1 Salmonella enterica strain PNUSAS354968 SAMN35686392-rid18355723.guided.24, whole genome shotgun sequence	2813..3250	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOFQZ010000018.1 Salmonella enterica strain PNUSAS354968 SAMN35686392-rid18355723.denovo.20, whole genome shotgun sequence	12133..13338	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFQZ010000036.1 Salmonella enterica strain PNUSAS354968 SAMN35686392-rid18355723.guided.23, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOFQZ010000026.1 Salmonella enterica strain PNUSAS354968 SAMN35686392-rid18355723.denovo.30, whole genome shotgun sequence	547..675	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOFQZ010000018.1 Salmonella enterica strain PNUSAS354968 SAMN35686392-rid18355723.denovo.20, whole genome shotgun sequence	19724..19865		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOFQZ010000036.1 Salmonella enterica strain PNUSAS354968 SAMN35686392-rid18355723.guided.23, whole genome shotgun sequence	3169..3310																																									avrA	ABOFQZ010000009.1	39458..40327	98.966	870	0						
GCA_032945215.1_PDT001774610.1_genomic.fna	Salmonella_enterica	0.5214	680.388 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOFQY010000001.1 Salmonella enterica strain PNUSAS354963 SAMN35686395-rid18355733.denovo.01, whole genome shotgun sequence	792583..793020	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOFQY010000023.1 Salmonella enterica strain PNUSAS354963 SAMN35686395-rid18355733.guided.14, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFQY010000002.1	544774..545642	99.425	870	0						
GCA_032945235.1_PDT001774608.1_genomic.fna	Salmonella_enterica	0.5215	254.345 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_70,sucA_9,thrA_2	213	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_70	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFRA010000001.1 Salmonella enterica strain PNUSAS354962 SAMN35686393-rid18355713.denovo.01, whole genome shotgun sequence	360822..361259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFRA010000051.1 Salmonella enterica strain PNUSAS354962 SAMN35686393-rid18355713.guided.38, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOFRA010000022.1 Salmonella enterica strain PNUSAS354962 SAMN35686393-rid18355713.denovo.22, whole genome shotgun sequence	48435..49077	enterobacteriales	IncFII(S)	100	262 / 262	ABOFRA010000022.1 Salmonella enterica strain PNUSAS354962 SAMN35686393-rid18355713.denovo.22, whole genome shotgun sequence	64151..64412																																																avrA	ABOFRA010000004.1	174136..175005	99.885	870	0						
GCA_032945255.1_PDT001774607.1_genomic.fna	Salmonella_enterica	0.5196	204.151 KB	8	aroC_175,dnaN_11,hemD_125,hisD_199,purE_9*,sucA_9,thrA_160	557*	6,14:z:l,z13,z28	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_175	dnaN	100	100	dnaN_11	hemD	100	100	hemD_125	hisD	100	100	hisD_199	purE	99.749373433584	100	purE_9*	sucA	100	100	sucA_9	thrA	100	100	thrA_160	6,14	z	l,z13,z28	Salmonella enterica subspecies enterica (subspecies I)	Poano		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOFRB010000001.1 Salmonella enterica strain PNUSAS354965 SAMN35686390-rid18355703.denovo.01, whole genome shotgun sequence	536881..537318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABOFRB010000096.1 Salmonella enterica strain PNUSAS354965 SAMN35686390-rid18355703.guided.26, whole genome shotgun sequence	5651..6088	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFRB010000007.1	140515..141384	98.966	870	0						
GCA_032945275.1_PDT001774606.1_genomic.fna	Salmonella_enterica	0.5219	390.991 KB	5	aroC_70,dnaN_7,hemD_10,hisD_10,purE_2,sucA_10,thrA_14	181	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_70	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_2	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOFRC010000002.1 Salmonella enterica strain PNUSAS354966 SAMN35686389-rid18355693.denovo.02, whole genome shotgun sequence	149565..150002	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOFRC010000030.1 Salmonella enterica strain PNUSAS354966 SAMN35686389-rid18355693.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOFRC010000001.1	524662..525531	99.31	870	0						
GCA_032946315.1_PDT001774466.1_genomic.fna	Salmonella_enterica	0.5213	406.316 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFTC010000001.1 Salmonella enterica strain PNUSAS354899 SAMN35685685-rid18353323.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFTC010000027.1 Salmonella enterica strain PNUSAS354899 SAMN35685685-rid18353323.guided.20, whole genome shotgun sequence	16851..17288	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFTC010000020.1 Salmonella enterica strain PNUSAS354899 SAMN35685685-rid18353323.denovo.21, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOFTC010000021.1 Salmonella enterica strain PNUSAS354899 SAMN35685685-rid18353323.denovo.22, whole genome shotgun sequence	3403..3664																																																avrA	ABOFTC010000002.1	553636..554505	99.54	870	0						
GCA_032946355.1_PDT001774464.1_genomic.fna	Salmonella_enterica	0.5223	639.955 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOFTE010000001.1 Salmonella enterica strain PNUSAS354916 SAMN35685294-rid18354313.denovo.01, whole genome shotgun sequence	458316..458753	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOFTE010000026.1 Salmonella enterica strain PNUSAS354916 SAMN35685294-rid18354313.guided.17, whole genome shotgun sequence	2537..2974	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOFTE010000002.1	553810..554679	99.77	870	0						
GCA_032946375.1_PDT001774463.1_genomic.fna	Salmonella_enterica	0.5222	386.067 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFTD010000001.1 Salmonella enterica strain PNUSAS354911 SAMN35685560-rid18353303.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFTD010000028.1 Salmonella enterica strain PNUSAS354911 SAMN35685560-rid18353303.guided.20, whole genome shotgun sequence	825..1262	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFTD010000029.1 Salmonella enterica strain PNUSAS354911 SAMN35685560-rid18353303.guided.21, whole genome shotgun sequence	825..1262	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFTD010000002.1	183177..184046	98.966	870	0						
GCA_032946415.1_PDT001774462.1_genomic.fna	Salmonella_enterica	0.5221	388.147 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOFTF010000001.1 Salmonella enterica strain PNUSAS354910 SAMN35685555-rid18354303.denovo.01, whole genome shotgun sequence	1374582..1375019	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFTF010000018.1 Salmonella enterica strain PNUSAS354910 SAMN35685555-rid18354303.denovo.22, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOFTF010000018.1 Salmonella enterica strain PNUSAS354910 SAMN35685555-rid18354303.denovo.22, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOFTF010000018.1 Salmonella enterica strain PNUSAS354910 SAMN35685555-rid18354303.denovo.22, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOFTF010000018.1 Salmonella enterica strain PNUSAS354910 SAMN35685555-rid18354303.denovo.22, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOFTF010000018.1 Salmonella enterica strain PNUSAS354910 SAMN35685555-rid18354303.denovo.22, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOFTF010000032.1 Salmonella enterica strain PNUSAS354910 SAMN35685555-rid18354303.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFTF010000033.1 Salmonella enterica strain PNUSAS354910 SAMN35685555-rid18354303.guided.21, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOFTF010000033.1 Salmonella enterica strain PNUSAS354910 SAMN35685555-rid18354303.guided.21, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOFTF010000033.1 Salmonella enterica strain PNUSAS354910 SAMN35685555-rid18354303.guided.21, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOFTF010000033.1 Salmonella enterica strain PNUSAS354910 SAMN35685555-rid18354303.guided.21, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOFTF010000033.1 Salmonella enterica strain PNUSAS354910 SAMN35685555-rid18354303.guided.21, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOFTF010000019.1 Salmonella enterica strain PNUSAS354910 SAMN35685555-rid18354303.denovo.24, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFTF010000034.1 Salmonella enterica strain PNUSAS354910 SAMN35685555-rid18354303.guided.23, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFTF010000007.1	140341..141210	99.655	870	0						
GCA_032946435.1_PDT001774461.1_genomic.fna	Salmonella_enterica	0.5223	649.757 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOFTG010000001.1 Salmonella enterica strain PNUSAS354901 SAMN35685557-rid18353293.denovo.01, whole genome shotgun sequence	458316..458753	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOFTG010000025.1 Salmonella enterica strain PNUSAS354901 SAMN35685557-rid18353293.guided.17, whole genome shotgun sequence	7443..7880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOFTG010000002.1	553810..554679	99.77	870	0						
GCA_032946555.1_PDT001774443.1_genomic.fna	Salmonella_enterica	0.5199	222.955 KB	8	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOFTN010000002.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-100 SAMN35685569-rid18353213.denovo.02, whole genome shotgun sequence	52041..52478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOFTN010000067.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-100 SAMN35685569-rid18353213.guided.37, whole genome shotgun sequence	16444..16881	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	ABOFTN010000005.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-100 SAMN35685569-rid18353213.denovo.05, whole genome shotgun sequence	282817..284016	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOFTN010000068.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-100 SAMN35685569-rid18353213.guided.41, whole genome shotgun sequence	1125..2324	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFTN010000038.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-100 SAMN35685569-rid18353213.denovo.42, whole genome shotgun sequence	3134..3264																																																						avrA	ABOFTN010000021.1	39458..40327	99.195	870	0						
GCA_032946575.1_PDT001774442.1_genomic.fna	Salmonella_enterica	0.5202	199.226 KB	7	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	8	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA1,aadA2,blaTEM-1B,blaTEM-1B,cml,cml,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOFTM010000001.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.denovo.01, whole genome shotgun sequence	51619..52056	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOFTM010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.denovo.33, whole genome shotgun sequence	3597..4388	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOFTM010000032.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.denovo.37, whole genome shotgun sequence	1164..1955	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.03	438/438	ABOFTM010000050.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.guided.23, whole genome shotgun sequence	16444..16881	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOFTM010000053.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.guided.34, whole genome shotgun sequence	3297..4088	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOFTM010000054.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.guided.36, whole genome shotgun sequence	3661..4452	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABOFTM010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.denovo.33, whole genome shotgun sequence	1333..2193	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFTM010000053.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.guided.34, whole genome shotgun sequence	1033..1893	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	ABOFTM010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.denovo.33, whole genome shotgun sequence	2657..3578	Chloramphenicol	M22614	cml	96.66	929/909	ABOFTM010000053.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.guided.34, whole genome shotgun sequence	2357..3278	Chloramphenicol	M22614	sul3	100	792/792	ABOFTM010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.denovo.33, whole genome shotgun sequence	6070..6861	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOFTM010000053.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.guided.34, whole genome shotgun sequence	5770..6561	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABOFTM010000004.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.denovo.04, whole genome shotgun sequence	282829..284028	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOFTM010000055.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.guided.38, whole genome shotgun sequence	1125..2324	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABOFTM010000032.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.denovo.37, whole genome shotgun sequence	2363..2860	Trimethoprim	AM040708	dfrA12	100	498/498	ABOFTM010000054.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.guided.36, whole genome shotgun sequence	2756..3253	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFTM010000035.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-102 SAMN35685570-rid18354193.denovo.41, whole genome shotgun sequence	3134..3264																																																						avrA	ABOFTM010000014.1	60934..61803	99.195	870	0						
GCA_032946595.1_PDT001774441.1_genomic.fna	Salmonella_enterica	0.5203	238.36 KB	6	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	8	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA1,aadA2,blaTEM-1B,blaTEM-1B,cml,cml,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOFTP010000001.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.denovo.01, whole genome shotgun sequence	260435..260872	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOFTP010000029.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.denovo.32, whole genome shotgun sequence	3597..4388	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOFTP010000031.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.denovo.36, whole genome shotgun sequence	1165..1956	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.03	438/438	ABOFTP010000055.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.guided.29, whole genome shotgun sequence	13210..13647	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOFTP010000057.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.guided.33, whole genome shotgun sequence	3297..4088	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOFTP010000058.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.guided.35, whole genome shotgun sequence	3660..4451	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABOFTP010000029.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.denovo.32, whole genome shotgun sequence	1333..2193	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFTP010000057.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.guided.33, whole genome shotgun sequence	1033..1893	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	ABOFTP010000029.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.denovo.32, whole genome shotgun sequence	2657..3578	Chloramphenicol	M22614	cml	96.66	929/909	ABOFTP010000057.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.guided.33, whole genome shotgun sequence	2357..3278	Chloramphenicol	M22614	sul3	100	792/792	ABOFTP010000029.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.denovo.32, whole genome shotgun sequence	6070..6861	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOFTP010000057.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.guided.33, whole genome shotgun sequence	5770..6561	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABOFTP010000004.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.denovo.04, whole genome shotgun sequence	282829..284028	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOFTP010000059.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.guided.37, whole genome shotgun sequence	1125..2324	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABOFTP010000031.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.denovo.36, whole genome shotgun sequence	2364..2861	Trimethoprim	AM040708	dfrA12	100	498/498	ABOFTP010000058.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.guided.35, whole genome shotgun sequence	2755..3252	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFTP010000035.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-103 SAMN35685571-rid18353203.denovo.41, whole genome shotgun sequence	3134..3264																																																						avrA	ABOFTP010000002.1	60934..61803	99.195	870	0						
GCA_032946615.1_PDT001774440.1_genomic.fna	Salmonella_enterica	0.5205	199.226 KB	8	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	8	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA1,aadA2,blaTEM-1B,blaTEM-1B,cml,cml,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12,dfrA12	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOFTQ010000011.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.denovo.11, whole genome shotgun sequence	51618..52055	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOFTQ010000033.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.denovo.36, whole genome shotgun sequence	3597..4388	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOFTQ010000034.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.denovo.38, whole genome shotgun sequence	1165..1956	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.03	438/438	ABOFTQ010000053.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.guided.33, whole genome shotgun sequence	2412..2849	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOFTQ010000054.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.guided.37, whole genome shotgun sequence	3297..4088	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOFTQ010000058.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.guided.45, whole genome shotgun sequence	518..1309	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABOFTQ010000033.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.denovo.36, whole genome shotgun sequence	1333..2193	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFTQ010000054.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.guided.37, whole genome shotgun sequence	1033..1893	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	ABOFTQ010000033.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.denovo.36, whole genome shotgun sequence	2657..3578	Chloramphenicol	M22614	cml	96.66	929/909	ABOFTQ010000054.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.guided.37, whole genome shotgun sequence	2357..3278	Chloramphenicol	M22614	sul3	100	792/792	ABOFTQ010000033.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.denovo.36, whole genome shotgun sequence	6070..6861	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOFTQ010000054.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.guided.37, whole genome shotgun sequence	5770..6561	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABOFTQ010000005.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.denovo.05, whole genome shotgun sequence	282829..284028	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOFTQ010000055.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.guided.39, whole genome shotgun sequence	1125..2324	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABOFTQ010000034.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.denovo.38, whole genome shotgun sequence	2364..2861	Trimethoprim	AM040708	dfrA12	99.8	498/498	ABOFTQ010000056.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.guided.43, whole genome shotgun sequence	2756..3253	Trimethoprim	AM040708	dfrA12	100	498/498	ABOFTQ010000057.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.guided.44, whole genome shotgun sequence	2756..3253	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFTQ010000036.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-106 SAMN35685572-rid18354183.denovo.41, whole genome shotgun sequence	3134..3264																																																						avrA	ABOFTQ010000009.1	60934..61803	99.195	870	0						
GCA_032946635.1_PDT001774439.1_genomic.fna	Salmonella_enterica	0.5202	156.957 KB	9	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	8	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA1,aadA2,blaTEM-1B,blaTEM-1B,cml,cml,cml,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOFTR010000001.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.denovo.01, whole genome shotgun sequence	47920..48357	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOFTR010000043.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.denovo.46, whole genome shotgun sequence	3597..4388	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOFTR010000048.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.denovo.52, whole genome shotgun sequence	1165..1956	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.15	351/438	ABOFTR010000078.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.guided.40, whole genome shotgun sequence	1..351	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOFTR010000081.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.guided.50, whole genome shotgun sequence	1612..2403	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOFTR010000082.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.guided.53, whole genome shotgun sequence	3660..4451	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABOFTR010000043.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.denovo.46, whole genome shotgun sequence	1333..2193	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFTR010000084.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.guided.60, whole genome shotgun sequence	1033..1893	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	ABOFTR010000043.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.denovo.46, whole genome shotgun sequence	2657..3578	Chloramphenicol	M22614	cml	96.66	929/909	ABOFTR010000081.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.guided.50, whole genome shotgun sequence	672..1593	Chloramphenicol	M22614	cml	96.66	929/909	ABOFTR010000084.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.guided.60, whole genome shotgun sequence	2357..3278	Chloramphenicol	M22614	sul3	100	792/792	ABOFTR010000043.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.denovo.46, whole genome shotgun sequence	6069..6860	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOFTR010000081.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.guided.50, whole genome shotgun sequence	4084..4875	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABOFTR010000020.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.denovo.20, whole genome shotgun sequence	88123..89322	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOFTR010000083.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.guided.54, whole genome shotgun sequence	1125..2324	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABOFTR010000048.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.denovo.52, whole genome shotgun sequence	2364..2861	Trimethoprim	AM040708	dfrA12	100	498/498	ABOFTR010000082.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.guided.53, whole genome shotgun sequence	2755..3252	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFTR010000055.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-108 SAMN35685573-rid18354173.denovo.62, whole genome shotgun sequence	1479..1609																																																						avrA	ABOFTR010000006.1	60934..61803	99.195	870	0						
GCA_032946655.1_PDT001774438.1_genomic.fna	Salmonella_enterica	0.5196	185.524 KB	8	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	8	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA1,aadA2,blaTEM-1B,blaTEM-1B,cml,cml,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOFTS010000008.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.denovo.08, whole genome shotgun sequence	69578..70015	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOFTS010000035.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.denovo.38, whole genome shotgun sequence	3597..4388	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOFTS010000037.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.denovo.42, whole genome shotgun sequence	1164..1955	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.03	438/438	ABOFTS010000067.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.guided.28, whole genome shotgun sequence	16444..16881	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOFTS010000069.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.guided.39, whole genome shotgun sequence	3297..4088	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOFTS010000070.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.guided.41, whole genome shotgun sequence	3661..4452	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABOFTS010000035.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.denovo.38, whole genome shotgun sequence	1333..2193	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFTS010000069.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.guided.39, whole genome shotgun sequence	1033..1893	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	ABOFTS010000035.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.denovo.38, whole genome shotgun sequence	2657..3578	Chloramphenicol	M22614	cml	96.66	929/909	ABOFTS010000069.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.guided.39, whole genome shotgun sequence	2357..3278	Chloramphenicol	M22614	sul3	100	792/792	ABOFTS010000035.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.denovo.38, whole genome shotgun sequence	6070..6861	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOFTS010000069.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.guided.39, whole genome shotgun sequence	5770..6561	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABOFTS010000033.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.denovo.36, whole genome shotgun sequence	3536..4735	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOFTS010000071.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.guided.43, whole genome shotgun sequence	1125..2324	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABOFTS010000037.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.denovo.42, whole genome shotgun sequence	2363..2860	Trimethoprim	AM040708	dfrA12	100	498/498	ABOFTS010000070.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.guided.41, whole genome shotgun sequence	2756..3253	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFTS010000040.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-109 SAMN35685574-rid18353193.denovo.46, whole genome shotgun sequence	3134..3264																																																						avrA	ABOFTS010000002.1	60934..61803	99.195	870	0						
GCA_032946675.1_PDT001774437.1_genomic.fna	Salmonella_enterica	0.5194	188.044 KB	8	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	5	aac(6')-Iaa,aadA2,aadA1,aadA1,aac(6')-Iaa,aadA2,aadA1,aadA1,blaTEM-1B,blaTEM-1B,sul1,sul1	1	parC_p.T57S	3	Col(pHAD28),IncI2,IncR	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOFTT010000008.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-110 SAMN35685575-rid18354163.denovo.08, whole genome shotgun sequence	51944..52381	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOFTT010000035.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-110 SAMN35685575-rid18354163.denovo.37, whole genome shotgun sequence	10098..10889	Spectinomycin, Streptomycin	JQ364967	aadA1	99.87	792/792	ABOFTT010000047.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-110 SAMN35685575-rid18354163.denovo.51, whole genome shotgun sequence	2544..3335	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	ABOFTT010000047.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-110 SAMN35685575-rid18354163.denovo.51, whole genome shotgun sequence	2544..3335	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.03	438/438	ABOFTT010000066.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-110 SAMN35685575-rid18354163.guided.28, whole genome shotgun sequence	16444..16881	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOFTT010000068.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-110 SAMN35685575-rid18354163.guided.40, whole genome shotgun sequence	7665..8456	Spectinomycin, Streptomycin	JQ364967	aadA1	99.87	792/792	ABOFTT010000070.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-110 SAMN35685575-rid18354163.guided.52, whole genome shotgun sequence	2334..3125	Spectinomycin, Streptomycin	JX185132	aadA1	99.87	792/792	ABOFTT010000070.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-110 SAMN35685575-rid18354163.guided.52, whole genome shotgun sequence	2334..3125	Spectinomycin, Streptomycin	JQ414041	blaTEM-1B	100	861/861	ABOFTT010000051.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-110 SAMN35685575-rid18354163.denovo.56, whole genome shotgun sequence	1433..2293	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFTT010000071.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-110 SAMN35685575-rid18354163.guided.63, whole genome shotgun sequence	210..1070	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	ABOFTT010000035.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-110 SAMN35685575-rid18354163.denovo.37, whole genome shotgun sequence	11394..12233	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFTT010000068.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-110 SAMN35685575-rid18354163.guided.40, whole genome shotgun sequence	8961..9800	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFTT010000043.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-110 SAMN35685575-rid18354163.denovo.47, whole genome shotgun sequence	3134..3264	enterobacteriales	IncI2	100	324 / 324	ABOFTT010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-110 SAMN35685575-rid18354163.denovo.32, whole genome shotgun sequence	17914..18237		enterobacteriales	IncR	100	251 / 251	ABOFTT010000038.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-110 SAMN35685575-rid18354163.denovo.41, whole genome shotgun sequence	8313..8563																																									avrA	ABOFTT010000001.1	39347..40216	99.195	870	0						
GCA_032946695.1_PDT001774436.1_genomic.fna	Salmonella_enterica	0.5201	239.277 KB	6	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOFTU010000004.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-114 SAMN35685576-rid18353183.denovo.04, whole genome shotgun sequence	157460..157897	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOFTU010000052.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-114 SAMN35685576-rid18353183.guided.30, whole genome shotgun sequence	9267..9704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFTU010000034.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-114 SAMN35685576-rid18353183.denovo.37, whole genome shotgun sequence	3134..3264																																																						avrA	ABOFTU010000012.1	39455..40324	99.195	870	0						
GCA_032946715.1_PDT001774435.1_genomic.fna	Salmonella_enterica	0.5205	272.172 KB	7	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	8	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA1,aadA2,blaTEM-1B,blaTEM-1B,cml,cml,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOFTV010000002.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.denovo.02, whole genome shotgun sequence	52168..52605	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOFTV010000034.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.denovo.37, whole genome shotgun sequence	3592..4383	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOFTV010000036.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.denovo.41, whole genome shotgun sequence	1164..1955	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.03	438/438	ABOFTV010000059.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.guided.30, whole genome shotgun sequence	7609..8046	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOFTV010000062.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.guided.38, whole genome shotgun sequence	3297..4088	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOFTV010000063.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.guided.40, whole genome shotgun sequence	3661..4452	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABOFTV010000034.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.denovo.37, whole genome shotgun sequence	1328..2188	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFTV010000062.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.guided.38, whole genome shotgun sequence	1033..1893	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	ABOFTV010000034.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.denovo.37, whole genome shotgun sequence	2652..3573	Chloramphenicol	M22614	cml	96.66	929/909	ABOFTV010000062.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.guided.38, whole genome shotgun sequence	2357..3278	Chloramphenicol	M22614	sul3	100	792/792	ABOFTV010000034.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.denovo.37, whole genome shotgun sequence	6065..6856	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOFTV010000062.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.guided.38, whole genome shotgun sequence	5770..6561	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABOFTV010000032.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.denovo.34, whole genome shotgun sequence	3536..4735	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOFTV010000064.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.guided.42, whole genome shotgun sequence	1125..2324	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABOFTV010000036.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.denovo.41, whole genome shotgun sequence	2363..2860	Trimethoprim	AM040708	dfrA12	100	498/498	ABOFTV010000063.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.guided.40, whole genome shotgun sequence	2756..3253	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFTV010000040.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-115 SAMN35685577-rid18354153.denovo.46, whole genome shotgun sequence	3134..3264																																																						avrA	ABOFTV010000015.1	60934..61803	99.195	870	0						
GCA_032946735.1_PDT001774434.1_genomic.fna	Salmonella_enterica	0.5198	192.927 KB	8	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	8	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA1,aadA2,blaTEM-1B,blaTEM-1B,cml,cml,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOFTW010000001.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.denovo.01, whole genome shotgun sequence	157452..157889	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOFTW010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.denovo.33, whole genome shotgun sequence	3597..4388	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOFTW010000033.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.denovo.38, whole genome shotgun sequence	1165..1956	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.03	438/438	ABOFTW010000053.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.guided.29, whole genome shotgun sequence	16444..16881	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOFTW010000054.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.guided.34, whole genome shotgun sequence	3297..4088	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOFTW010000055.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.guided.37, whole genome shotgun sequence	3660..4451	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABOFTW010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.denovo.33, whole genome shotgun sequence	1333..2193	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFTW010000054.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.guided.34, whole genome shotgun sequence	1033..1893	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cml	96.66	929/909	ABOFTW010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.denovo.33, whole genome shotgun sequence	2657..3578	Chloramphenicol	M22614	cml	96.66	929/909	ABOFTW010000054.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.guided.34, whole genome shotgun sequence	2357..3278	Chloramphenicol	M22614	sul3	100	792/792	ABOFTW010000030.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.denovo.33, whole genome shotgun sequence	6070..6861	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOFTW010000054.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.guided.34, whole genome shotgun sequence	5770..6561	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABOFTW010000012.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.denovo.12, whole genome shotgun sequence	146949..148148	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOFTW010000056.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.guided.39, whole genome shotgun sequence	1125..2324	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABOFTW010000033.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.denovo.38, whole genome shotgun sequence	2364..2861	Trimethoprim	AM040708	dfrA12	100	498/498	ABOFTW010000055.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.guided.37, whole genome shotgun sequence	2755..3252	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFTW010000038.1 Salmonella enterica subsp. enterica serovar Rissen strain H2-116 SAMN35685578-rid18354143.denovo.44, whole genome shotgun sequence	3134..3264																																																						avrA	ABOFTW010000008.1	60934..61803	99.195	870	0						
GCA_032946755.1_PDT001774433.1_genomic.fna	Salmonella_enterica	0.5215	481.382 KB	4	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFTX010000002.1 Salmonella enterica strain PNUSAS354904 SAMN35685566-rid18353173.denovo.02, whole genome shotgun sequence	624551..624988	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFTX010000028.1 Salmonella enterica strain PNUSAS354904 SAMN35685566-rid18353173.guided.20, whole genome shotgun sequence	6306..6743	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOFTX010000014.1 Salmonella enterica strain PNUSAS354904 SAMN35685566-rid18353173.denovo.14, whole genome shotgun sequence	15755..16288																																																																	
GCA_032946775.1_PDT001774432.1_genomic.fna	Salmonella_enterica	0.5213	279.074 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFTY010000002.1 Salmonella enterica strain PNUSAS354876 SAMN35684954-rid18354133.denovo.02, whole genome shotgun sequence	20725..21162	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFTY010000036.1 Salmonella enterica strain PNUSAS354876 SAMN35684954-rid18354133.denovo.41, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFTY010000036.1 Salmonella enterica strain PNUSAS354876 SAMN35684954-rid18354133.denovo.41, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOFTY010000060.1 Salmonella enterica strain PNUSAS354876 SAMN35684954-rid18354133.guided.33, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFTY010000062.1 Salmonella enterica strain PNUSAS354876 SAMN35684954-rid18354133.guided.40, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFTY010000062.1 Salmonella enterica strain PNUSAS354876 SAMN35684954-rid18354133.guided.40, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOFTY010000043.1 Salmonella enterica strain PNUSAS354876 SAMN35684954-rid18354133.denovo.49, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFTY010000063.1 Salmonella enterica strain PNUSAS354876 SAMN35684954-rid18354133.guided.48, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOFTY010000036.1 Salmonella enterica strain PNUSAS354876 SAMN35684954-rid18354133.denovo.41, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOFTY010000062.1 Salmonella enterica strain PNUSAS354876 SAMN35684954-rid18354133.guided.40, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOFTY010000031.1 Salmonella enterica strain PNUSAS354876 SAMN35684954-rid18354133.denovo.35, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFTY010000061.1 Salmonella enterica strain PNUSAS354876 SAMN35684954-rid18354133.guided.34, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABOFTY010000001.1	636050..636919	99.885	870	0						
GCA_032946935.1_PDT001774431.1_genomic.fna	Salmonella_enterica	0.5225	243.516 KB	4	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFTZ010000001.1 Salmonella enterica strain PNUSAS354921 SAMN35685592-rid18353163.denovo.01, whole genome shotgun sequence	831212..831649	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFTZ010000036.1 Salmonella enterica strain PNUSAS354921 SAMN35685592-rid18353163.guided.26, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032946975.1_PDT001774430.1_genomic.fna	Salmonella_enterica	0.5156	282.503 KB	7	aroC_509,dnaN_474,hemD_32,hisD_27,purE_22,sucA_29,thrA_30	2193	40:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_509	dnaN	100	100	dnaN_474	hemD	100	100	hemD_32	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	40	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV [1],40:z4,z32:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABOFUA010000009.1 Salmonella enterica strain PNUSAS354908 SAMN35685562-rid18354123.denovo.09, whole genome shotgun sequence	6819..7256	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABOFUA010000047.1 Salmonella enterica strain PNUSAS354908 SAMN35685562-rid18354123.guided.36, whole genome shotgun sequence	4359..4796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032947095.1_PDT001774424.1_genomic.fna	Salmonella_enterica	0.5214	225.554 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col8282,IncFIB(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFUD010000001.1 Salmonella enterica strain PNUSAS354920 SAMN35685591-rid18354073.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFUD010000067.1 Salmonella enterica strain PNUSAS354920 SAMN35685591-rid18354073.guided.31, whole genome shotgun sequence	905..1342	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col8282	100	207 / 207	ABOFUD010000052.1 Salmonella enterica strain PNUSAS354920 SAMN35685591-rid18354073.denovo.55, whole genome shotgun sequence	414..620	enterobacteriales	IncFIB(S)	100	643 / 643	ABOFUD010000040.1 Salmonella enterica strain PNUSAS354920 SAMN35685591-rid18354073.denovo.42, whole genome shotgun sequence	6801..7443		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOFUD010000033.1 Salmonella enterica strain PNUSAS354920 SAMN35685591-rid18354073.denovo.34, whole genome shotgun sequence	6311..6452																																									avrA	ABOFUD010000002.1	209212..210080	100	869	0						
GCA_032947115.1_PDT001774423.1_genomic.fna	Salmonella_enterica	0.5202	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOFUF010000009.1 Salmonella enterica strain PNUSAS354907 SAMN35685565-rid18353143.denovo.09, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOFUF010000058.1 Salmonella enterica strain PNUSAS354907 SAMN35685565-rid18353143.guided.51, whole genome shotgun sequence	1451..1885	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032947145.1_PDT001774421.1_genomic.fna	Salmonella_enterica	0.5213	322.706 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFUG010000003.1 Salmonella enterica strain PNUSAS354909 SAMN35685297-rid18353133.denovo.03, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFUG010000038.1 Salmonella enterica strain PNUSAS354909 SAMN35685297-rid18353133.guided.31, whole genome shotgun sequence	1100..1537	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOFUG010000001.1	452687..453555	100	869	0						
GCA_032947185.1_PDT001774387.1_genomic.fna	Salmonella_enterica	0.5224	406.451 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	ABOFUI010000001.1 Salmonella enterica strain PNUSAS354905 SAMN35685554-rid18353853.denovo.01, whole genome shotgun sequence	484962..485399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABOFUI010000024.1 Salmonella enterica strain PNUSAS354905 SAMN35685554-rid18353853.guided.21, whole genome shotgun sequence	3994..4431	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFUI010000015.1 Salmonella enterica strain PNUSAS354905 SAMN35685554-rid18353853.denovo.15, whole genome shotgun sequence	24387..25029	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOFUI010000015.1 Salmonella enterica strain PNUSAS354905 SAMN35685554-rid18353853.denovo.15, whole genome shotgun sequence	9280..9539																																																avrA	ABOFUI010000002.1	507682..508551	99.54	870	0						
GCA_032947195.1_PDT001774420.1_genomic.fna	Salmonella_enterica	0.5213	407.823 KB	4	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOFUH010000001.1 Salmonella enterica strain PNUSAS354903 SAMN35685564-rid18354053.denovo.01, whole genome shotgun sequence	648575..649012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOFUH010000020.1 Salmonella enterica strain PNUSAS354903 SAMN35685564-rid18354053.guided.17, whole genome shotgun sequence	3522..3959	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFUH010000004.1	140050..140919	99.425	870	0						
GCA_032947315.1_PDT001774386.1_genomic.fna	Salmonella_enterica	0.5213	406.408 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFUJ010000001.1 Salmonella enterica strain PNUSAS354915 SAMN35685558-rid18352993.denovo.01, whole genome shotgun sequence	815099..815536	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFUJ010000027.1 Salmonella enterica strain PNUSAS354915 SAMN35685558-rid18352993.guided.21, whole genome shotgun sequence	6640..7077	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFUJ010000019.1 Salmonella enterica strain PNUSAS354915 SAMN35685558-rid18352993.denovo.19, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOFUJ010000020.1 Salmonella enterica strain PNUSAS354915 SAMN35685558-rid18352993.denovo.22, whole genome shotgun sequence	3400..3661																																																avrA	ABOFUJ010000008.1	140717..141586	99.54	870	0						
GCA_032947335.1_PDT001774385.1_genomic.fna	Salmonella_enterica	0.5203	406.445 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFUK010000001.1 Salmonella enterica strain PNUSAS354913 SAMN35685559-rid18353843.denovo.01, whole genome shotgun sequence	774428..774865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFUK010000031.1 Salmonella enterica strain PNUSAS354913 SAMN35685559-rid18353843.guided.17, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFUK010000020.1 Salmonella enterica strain PNUSAS354913 SAMN35685559-rid18353843.denovo.23, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOFUK010000021.1 Salmonella enterica strain PNUSAS354913 SAMN35685559-rid18353843.denovo.24, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.93	374 / 374	ABOFUK010000016.1 Salmonella enterica strain PNUSAS354913 SAMN35685559-rid18353843.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABOFUK010000002.1	553362..554231	99.54	870	0						
GCA_032947395.1_PDT001774383.1_genomic.fna	Salmonella_enterica	0.5214	381.94 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFUL010000001.1 Salmonella enterica strain PNUSAS354900 SAMN35685556-rid18352973.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFUL010000027.1 Salmonella enterica strain PNUSAS354900 SAMN35685556-rid18352973.guided.23, whole genome shotgun sequence	3909..4346	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFUL010000020.1 Salmonella enterica strain PNUSAS354900 SAMN35685556-rid18352973.denovo.20, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOFUL010000016.1 Salmonella enterica strain PNUSAS354900 SAMN35685556-rid18352973.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABOFUL010000002.1	553642..554511	99.54	870	0						
GCA_032947435.1_PDT001774382.1_genomic.fna	Salmonella_enterica	0.5199	297.688 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(S)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOFUN010000001.1 Salmonella enterica strain PNUSAS354902 SAMN35685563-rid18353833.denovo.01, whole genome shotgun sequence	749558..749995	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOFUN010000048.1 Salmonella enterica strain PNUSAS354902 SAMN35685563-rid18353833.guided.34, whole genome shotgun sequence	129..566	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOFUN010000013.1 Salmonella enterica strain PNUSAS354902 SAMN35685563-rid18353833.denovo.13, whole genome shotgun sequence	5354..5996	enterobacteriales	IncFII(S)	92.37	262 / 262	ABOFUN010000013.1 Salmonella enterica strain PNUSAS354902 SAMN35685563-rid18353833.denovo.13, whole genome shotgun sequence	54194..54452																																																avrA	ABOFUN010000005.1	149088..149957	98.966	870	0						
GCA_032947455.1_PDT001774381.1_genomic.fna	Salmonella_enterica	0.5195	153.393 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOFUO010000008.1 Salmonella enterica strain PNUSAS354919 SAMN35685594-rid18352963.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOFUO010000062.1 Salmonella enterica strain PNUSAS354919 SAMN35685594-rid18352963.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032947495.1_PDT001774379.1_genomic.fna	Salmonella_enterica	0.5213	489.844 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFUQ010000001.1 Salmonella enterica strain PNUSAS354917 SAMN35685295-rid18352953.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFUQ010000025.1 Salmonella enterica strain PNUSAS354917 SAMN35685295-rid18352953.guided.17, whole genome shotgun sequence	7594..8031	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFUQ010000017.1 Salmonella enterica strain PNUSAS354917 SAMN35685295-rid18352953.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOFUQ010000018.1 Salmonella enterica strain PNUSAS354917 SAMN35685295-rid18352953.denovo.20, whole genome shotgun sequence	3390..3651																																																avrA	ABOFUQ010000002.1	505310..506179	99.54	870	0						
GCA_032947575.1_PDT001774380.1_genomic.fna	Salmonella_enterica	0.5214	405.194 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFUP010000001.1 Salmonella enterica strain PNUSAS354906 SAMN35685561-rid18353823.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFUP010000018.1 Salmonella enterica strain PNUSAS354906 SAMN35685561-rid18353823.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOFUP010000019.1 Salmonella enterica strain PNUSAS354906 SAMN35685561-rid18353823.denovo.21, whole genome shotgun sequence	3400..3661																																																avrA	ABOFUP010000007.1	175197..176066	99.54	870	0						
GCA_032947615.1_PDT001774376.1_genomic.fna	Salmonella_enterica	0.5222	343.533 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFUV010000001.1 Salmonella enterica strain PNUSAS354914 SAMN35685296-rid18352933.denovo.01, whole genome shotgun sequence	454799..455236	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFUV010000030.1 Salmonella enterica strain PNUSAS354914 SAMN35685296-rid18352933.guided.17, whole genome shotgun sequence	29112..29549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFUV010000007.1	141564..142433	98.966	870	0						
GCA_032947635.1_PDT001774377.1_genomic.fna	Salmonella_enterica	0.5212	284.031 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncU	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFUT010000001.1 Salmonella enterica strain PNUSAS354912 SAMN35685298-rid18353813.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFUT010000034.1 Salmonella enterica strain PNUSAS354912 SAMN35685298-rid18353813.guided.29, whole genome shotgun sequence	3251..3688	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFUT010000026.1 Salmonella enterica strain PNUSAS354912 SAMN35685298-rid18353813.denovo.26, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOFUT010000027.1 Salmonella enterica strain PNUSAS354912 SAMN35685298-rid18353813.denovo.28, whole genome shotgun sequence	3379..3640		enterobacteriales	IncU	100	565 / 565	ABOFUT010000021.1 Salmonella enterica strain PNUSAS354912 SAMN35685298-rid18353813.denovo.21, whole genome shotgun sequence	3013..3577																																									avrA	ABOFUT010000002.1	140715..141584	99.54	870	0						
GCA_032947815.1_PDT001774373.1_genomic.fna	Salmonella_enterica	0.5213	228.303 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFUW010000003.1 Salmonella enterica strain PNUSAS354785 SAMN35685299-rid18352913.denovo.03, whole genome shotgun sequence	158954..159391	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFUW010000039.1 Salmonella enterica strain PNUSAS354785 SAMN35685299-rid18352913.guided.30, whole genome shotgun sequence	8929..9366	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFUW010000023.1 Salmonella enterica strain PNUSAS354785 SAMN35685299-rid18352913.denovo.23, whole genome shotgun sequence	36763..37405	enterobacteriales	IncFII(S)	100	262 / 262	ABOFUW010000023.1 Salmonella enterica strain PNUSAS354785 SAMN35685299-rid18352913.denovo.23, whole genome shotgun sequence	42855..43116																																																avrA	ABOFUW010000001.1	552676..553545	99.54	870	0						
GCA_032950995.1_PDT001774311.1_genomic.fna	Salmonella_enterica	0.5215	264.58 KB	5	aroC_18,dnaN_14,hemD_12,hisD_9,purE_5,sucA_18,thrA_21	36	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_14	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_18	thrA	100	100	thrA_21	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFXE010000001.1 Salmonella enterica strain PNUSAS354877 SAMN35684953-rid18352643.denovo.01, whole genome shotgun sequence	634441..634878	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFXE010000033.1 Salmonella enterica strain PNUSAS354877 SAMN35684953-rid18352643.guided.19, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOFXE010000007.1	64836..65705	99.885	870	0						
GCA_032951045.1_PDT001774310.1_genomic.fna	Salmonella_enterica	0.52	742.082 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFXD010000001.1 Salmonella enterica strain PNUSAS354878 SAMN35684956-rid18353443.denovo.01, whole genome shotgun sequence	643297..643734	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFXD010000020.1 Salmonella enterica strain PNUSAS354878 SAMN35684956-rid18353443.guided.11, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032951155.1_PDT001774290.1_genomic.fna	Salmonella_enterica	0.5195	182.781 KB	10	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFXR010000002.1 Salmonella enterica strain 23IA05CL01-S1 SAMN35684830-rid18353383.denovo.02, whole genome shotgun sequence	159375..159812	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFXR010000049.1 Salmonella enterica strain 23IA05CL01-S1 SAMN35684830-rid18353383.denovo.52, whole genome shotgun sequence	6683..7519	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFXR010000049.1 Salmonella enterica strain 23IA05CL01-S1 SAMN35684830-rid18353383.denovo.52, whole genome shotgun sequence	7519..8322	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOFXR010000072.1 Salmonella enterica strain 23IA05CL01-S1 SAMN35684830-rid18353383.guided.45, whole genome shotgun sequence	13649..14086	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFXR010000073.1 Salmonella enterica strain 23IA05CL01-S1 SAMN35684830-rid18353383.guided.55, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFXR010000073.1 Salmonella enterica strain 23IA05CL01-S1 SAMN35684830-rid18353383.guided.55, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOFXR010000053.1 Salmonella enterica strain 23IA05CL01-S1 SAMN35684830-rid18353383.denovo.57, whole genome shotgun sequence	717..1922	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOFXR010000074.1 Salmonella enterica strain 23IA05CL01-S1 SAMN35684830-rid18353383.guided.61, whole genome shotgun sequence	752..1957	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOFXR010000030.1 Salmonella enterica strain 23IA05CL01-S1 SAMN35684830-rid18353383.denovo.30, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOFXR010000049.1 Salmonella enterica strain 23IA05CL01-S1 SAMN35684830-rid18353383.denovo.52, whole genome shotgun sequence	5799..6060		enterobacteriales	IncFII	96.95	262 / 261	ABOFXR010000073.1 Salmonella enterica strain 23IA05CL01-S1 SAMN35684830-rid18353383.guided.55, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOFXR010000047.1 Salmonella enterica strain 23IA05CL01-S1 SAMN35684830-rid18353383.denovo.50, whole genome shotgun sequence	2153..2525																																		avrA	ABOFXR010000011.1	155962..156831	99.655	870	0						
GCA_032951215.1_PDT001774289.1_genomic.fna	Salmonella_enterica	0.521	117.71 KB	15	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFXT010000036.1 Salmonella enterica strain 23IA05CG01-S1 SAMN35684829-rid18352573.denovo.36, whole genome shotgun sequence	31197..31634	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOFXT010000053.1 Salmonella enterica strain 23IA05CG01-S1 SAMN35684829-rid18352573.denovo.55, whole genome shotgun sequence	6053..6855	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOFXT010000053.1 Salmonella enterica strain 23IA05CG01-S1 SAMN35684829-rid18352573.denovo.55, whole genome shotgun sequence	6053..6856	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOFXT010000053.1 Salmonella enterica strain 23IA05CG01-S1 SAMN35684829-rid18352573.denovo.55, whole genome shotgun sequence	6053..6856	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOFXT010000053.1 Salmonella enterica strain 23IA05CG01-S1 SAMN35684829-rid18352573.denovo.55, whole genome shotgun sequence	6053..6856	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOFXT010000053.1 Salmonella enterica strain 23IA05CG01-S1 SAMN35684829-rid18352573.denovo.55, whole genome shotgun sequence	5313..6053	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOFXT010000053.1 Salmonella enterica strain 23IA05CG01-S1 SAMN35684829-rid18352573.denovo.55, whole genome shotgun sequence	5313..6053	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABOFXT010000095.1 Salmonella enterica strain 23IA05CG01-S1 SAMN35684829-rid18352573.guided.54, whole genome shotgun sequence	7381..7818	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOFXT010000096.1 Salmonella enterica strain 23IA05CG01-S1 SAMN35684829-rid18352573.guided.60, whole genome shotgun sequence	7549..8351	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOFXT010000096.1 Salmonella enterica strain 23IA05CG01-S1 SAMN35684829-rid18352573.guided.60, whole genome shotgun sequence	7548..8351	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOFXT010000096.1 Salmonella enterica strain 23IA05CG01-S1 SAMN35684829-rid18352573.guided.60, whole genome shotgun sequence	7548..8351	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOFXT010000096.1 Salmonella enterica strain 23IA05CG01-S1 SAMN35684829-rid18352573.guided.60, whole genome shotgun sequence	7548..8351	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOFXT010000096.1 Salmonella enterica strain 23IA05CG01-S1 SAMN35684829-rid18352573.guided.60, whole genome shotgun sequence	8351..9091	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOFXT010000096.1 Salmonella enterica strain 23IA05CG01-S1 SAMN35684829-rid18352573.guided.60, whole genome shotgun sequence	8351..9091	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOFXT010000072.1 Salmonella enterica strain 23IA05CG01-S1 SAMN35684829-rid18352573.denovo.76, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABOFXT010000033.1 Salmonella enterica strain 23IA05CG01-S1 SAMN35684829-rid18352573.denovo.33, whole genome shotgun sequence	4946..5442																																																avrA	ABOFXT010000006.1	174562..175431	98.966	870	0						
GCA_032951975.1_PDT001774309.1_genomic.fna	Salmonella_enterica	0.5208	489.522 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFXG010000001.1 Salmonella enterica strain PNUSAS354875 SAMN35684955-rid18352633.denovo.01, whole genome shotgun sequence	815076..815513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFXG010000025.1 Salmonella enterica strain PNUSAS354875 SAMN35684955-rid18352633.guided.13, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFXG010000016.1 Salmonella enterica strain PNUSAS354875 SAMN35684955-rid18352633.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOFXG010000017.1 Salmonella enterica strain PNUSAS354875 SAMN35684955-rid18352633.denovo.20, whole genome shotgun sequence	3423..3684																																																avrA	ABOFXG010000002.1	553176..554045	99.54	870	0						
GCA_032952065.1_PDT001774308.1_genomic.fna	Salmonella_enterica	0.5226	389.304 KB	3	aroC_543,dnaN_69,hemD_101,hisD_12,purE_370,sucA_130,thrA_347	2553	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_543	dnaN	100	100	dnaN_69	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_370	sucA	100	100	sucA_130	thrA	100	100	thrA_347	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOFXH010000001.1 Salmonella enterica strain PNUSAS354879 SAMN35684952-rid18353433.denovo.01, whole genome shotgun sequence	485835..486272	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOFXH010000030.1 Salmonella enterica strain PNUSAS354879 SAMN35684952-rid18353433.guided.22, whole genome shotgun sequence	916..1353	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFXH010000002.1	514148..515017	99.31	870	0						
GCA_032952095.1_PDT001774307.1_genomic.fna	Salmonella_enterica	0.5202	163.089 KB	10	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFXI010000017.1 Salmonella enterica subsp. enterica serovar Kentucky strain 230015872 SAMN35684951-rid18353423.denovo.17, whole genome shotgun sequence	82764..83201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFXI010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain 230015872 SAMN35684951-rid18353423.guided.40, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABOFXI010000039.1 Salmonella enterica subsp. enterica serovar Kentucky strain 230015872 SAMN35684951-rid18353423.denovo.39, whole genome shotgun sequence	11248..11507	enterobacteriales	IncX1	100	373 / 373	ABOFXI010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain 230015872 SAMN35684951-rid18353423.denovo.48, whole genome shotgun sequence	2153..2525																																																avrA	ABOFXI010000008.1	39419..40288	99.655	870	0						
GCA_032952215.1_PDT001774291.1_genomic.fna	Salmonella_enterica	0.5221	374.093 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFXQ010000001.1 Salmonella enterica strain PNUSAS354855 SAMN35684920-rid18352583.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOFXQ010000036.1 Salmonella enterica strain PNUSAS354855 SAMN35684920-rid18352583.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFXQ010000002.1	149828..150697	99.655	870	0						
GCA_032952375.1_PDT001774288.1_genomic.fna	Salmonella_enterica	0.521	480.935 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFXU010000001.1 Salmonella enterica strain PNUSAS354856 SAMN35684919-rid18353373.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFXU010000025.1 Salmonella enterica strain PNUSAS354856 SAMN35684919-rid18353373.guided.16, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFXU010000014.1 Salmonella enterica strain PNUSAS354856 SAMN35684919-rid18353373.denovo.14, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABOFXU010000017.1 Salmonella enterica strain PNUSAS354856 SAMN35684919-rid18353373.denovo.20, whole genome shotgun sequence	3395..3656																																																avrA	ABOFXU010000002.1	553636..554505	99.54	870	0						
GCA_032952415.1_PDT001774279.1_genomic.fna	Salmonella_enterica	0.5206	367.078 KB	5	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFXV010000001.1 Salmonella enterica strain PNUSAS354849 SAMN35684067-rid18352523.denovo.01, whole genome shotgun sequence	689944..690381	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFXV010000060.1 Salmonella enterica strain PNUSAS354849 SAMN35684067-rid18352523.guided.24, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOFXV010000026.1 Salmonella enterica strain PNUSAS354849 SAMN35684067-rid18352523.denovo.28, whole genome shotgun sequence	11451..12093	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABOFXV010000024.1 Salmonella enterica strain PNUSAS354849 SAMN35684067-rid18352523.denovo.26, whole genome shotgun sequence	20415..20997																																																avrA	ABOFXV010000009.1	120952..121821	98.966	870	0						
GCA_032952455.1_PDT001774278.1_genomic.fna	Salmonella_enterica	0.522	258.958 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFXX010000001.1 Salmonella enterica strain PNUSAS354850 SAMN35684068-rid18352513.denovo.01, whole genome shotgun sequence	482675..483112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFXX010000047.1 Salmonella enterica strain PNUSAS354850 SAMN35684068-rid18352513.guided.36, whole genome shotgun sequence	5120..5557	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOFXX010000021.1 Salmonella enterica strain PNUSAS354850 SAMN35684068-rid18352513.denovo.21, whole genome shotgun sequence	48420..49062	enterobacteriales	IncFII(S)	100	262 / 262	ABOFXX010000021.1 Salmonella enterica strain PNUSAS354850 SAMN35684068-rid18352513.denovo.21, whole genome shotgun sequence	64147..64408																																																avrA	ABOFXX010000006.1	174641..175510	99.885	870	0						
GCA_032952495.1_PDT001774277.1_genomic.fna	Salmonella_enterica	0.5233	619.388 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFXW010000001.1 Salmonella enterica strain PNUSAS354853 SAMN35684071-rid18352503.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOFXW010000030.1 Salmonella enterica strain PNUSAS354853 SAMN35684071-rid18352503.guided.20, whole genome shotgun sequence	2548..2985	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFXW010000003.1	149828..150697	99.655	870	0						
GCA_032952515.1_PDT001774275.1_genomic.fna	Salmonella_enterica	0.5208	696.373 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFXZ010000001.1 Salmonella enterica strain PNUSAS354854 SAMN35684065-rid18352483.denovo.01, whole genome shotgun sequence	642173..642610	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFXZ010000016.1 Salmonella enterica strain PNUSAS354854 SAMN35684065-rid18352483.guided.11, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032952535.1_PDT001774276.1_genomic.fna	Salmonella_enterica	0.5213	454.05 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOFXY010000001.1 Salmonella enterica strain PNUSAS354851 SAMN35684069-rid18352493.denovo.01, whole genome shotgun sequence	398384..398821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOFXY010000025.1 Salmonella enterica strain PNUSAS354851 SAMN35684069-rid18352493.guided.17, whole genome shotgun sequence	8269..8706	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFXY010000007.1	163189..164057	99.425	870	0						
GCA_032952635.1_PDT001774274.1_genomic.fna	Salmonella_enterica	0.5222	468.309 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOFYA010000001.1 Salmonella enterica strain PNUSAS354852 SAMN35684070-rid18352473.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOFYA010000030.1 Salmonella enterica strain PNUSAS354852 SAMN35684070-rid18352473.guided.22, whole genome shotgun sequence	962..1399	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFYA010000002.1	561740..562610	99.656	871	0						
GCA_032952675.1_PDT001774273.1_genomic.fna	Salmonella_enterica	0.5226	499.577 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOFYB010000008.1 Salmonella enterica strain PNUSAS354848 SAMN35684066-rid18352463.denovo.08, whole genome shotgun sequence	145116..145553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOFYB010000029.1 Salmonella enterica strain PNUSAS354848 SAMN35684066-rid18352463.guided.21, whole genome shotgun sequence	5044..5481	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABOFYB010000018.1 Salmonella enterica strain PNUSAS354848 SAMN35684066-rid18352463.denovo.20, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOFYB010000030.1 Salmonella enterica strain PNUSAS354848 SAMN35684066-rid18352463.guided.23, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOFYB010000018.1 Salmonella enterica strain PNUSAS354848 SAMN35684066-rid18352463.denovo.20, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOFYB010000031.1 Salmonella enterica strain PNUSAS354848 SAMN35684066-rid18352463.guided.26, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOFYB010000018.1 Salmonella enterica strain PNUSAS354848 SAMN35684066-rid18352463.denovo.20, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFYB010000030.1 Salmonella enterica strain PNUSAS354848 SAMN35684066-rid18352463.guided.23, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOFYB010000018.1 Salmonella enterica strain PNUSAS354848 SAMN35684066-rid18352463.denovo.20, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOFYB010000030.1 Salmonella enterica strain PNUSAS354848 SAMN35684066-rid18352463.guided.23, whole genome shotgun sequence	9840..11114	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOFYB010000018.1 Salmonella enterica strain PNUSAS354848 SAMN35684066-rid18352463.denovo.20, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABOFYB010000030.1 Salmonella enterica strain PNUSAS354848 SAMN35684066-rid18352463.guided.23, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOFYB010000017.1 Salmonella enterica strain PNUSAS354848 SAMN35684066-rid18352463.denovo.18, whole genome shotgun sequence	4434..4684																																																						avrA	ABOFYB010000001.1	553474..554343	99.77	870	0						
GCA_032952695.1_PDT001774272.1_genomic.fna	Salmonella_enterica	0.5226	289.62 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOFYC010000001.1 Salmonella enterica strain PNUSAS354833 SAMN35684053-rid18352453.denovo.01, whole genome shotgun sequence	405412..405849	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOFYC010000033.1 Salmonella enterica strain PNUSAS354833 SAMN35684053-rid18352453.guided.24, whole genome shotgun sequence	4316..4753	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFYC010000004.1	174277..175145	99.425	870	0						
GCA_032952715.1_PDT001774270.1_genomic.fna	Salmonella_enterica	0.5225	613.688 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOFYE010000001.1 Salmonella enterica strain PNUSAS354832 SAMN35684050-rid18352433.denovo.01, whole genome shotgun sequence	1006522..1006959	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFYE010000021.1 Salmonella enterica strain PNUSAS354832 SAMN35684050-rid18352433.denovo.25, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOFYE010000021.1 Salmonella enterica strain PNUSAS354832 SAMN35684050-rid18352433.denovo.25, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOFYE010000021.1 Salmonella enterica strain PNUSAS354832 SAMN35684050-rid18352433.denovo.25, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOFYE010000021.1 Salmonella enterica strain PNUSAS354832 SAMN35684050-rid18352433.denovo.25, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOFYE010000021.1 Salmonella enterica strain PNUSAS354832 SAMN35684050-rid18352433.denovo.25, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOFYE010000034.1 Salmonella enterica strain PNUSAS354832 SAMN35684050-rid18352433.guided.17, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFYE010000037.1 Salmonella enterica strain PNUSAS354832 SAMN35684050-rid18352433.guided.24, whole genome shotgun sequence	1681..2517	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOFYE010000037.1 Salmonella enterica strain PNUSAS354832 SAMN35684050-rid18352433.guided.24, whole genome shotgun sequence	879..1681	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOFYE010000037.1 Salmonella enterica strain PNUSAS354832 SAMN35684050-rid18352433.guided.24, whole genome shotgun sequence	878..1681	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOFYE010000037.1 Salmonella enterica strain PNUSAS354832 SAMN35684050-rid18352433.guided.24, whole genome shotgun sequence	878..1681	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOFYE010000037.1 Salmonella enterica strain PNUSAS354832 SAMN35684050-rid18352433.guided.24, whole genome shotgun sequence	878..1681	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOFYE010000022.1 Salmonella enterica strain PNUSAS354832 SAMN35684050-rid18352433.denovo.26, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFYE010000038.1 Salmonella enterica strain PNUSAS354832 SAMN35684050-rid18352433.guided.29, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABOFYE010000026.1 Salmonella enterica strain PNUSAS354832 SAMN35684050-rid18352433.denovo.31, whole genome shotgun sequence	805..997																																																						avrA	ABOFYE010000003.1	573274..574143	99.655	870	0						
GCA_032952775.1_PDT001774271.1_genomic.fna	Salmonella_enterica	0.5213	447.005 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_547	2370	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_547	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFYD010000001.1 Salmonella enterica strain PNUSAS354836 SAMN35684049-rid18352443.denovo.01, whole genome shotgun sequence	830090..830527	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFYD010000024.1 Salmonella enterica strain PNUSAS354836 SAMN35684049-rid18352443.guided.15, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFYD010000008.1	246082..246951	99.195	870	0						
GCA_032952795.1_PDT001774269.1_genomic.fna	Salmonella_enterica	0.5213	489.888 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFYF010000001.1 Salmonella enterica strain PNUSAS354838 SAMN35684052-rid18352423.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFYF010000025.1 Salmonella enterica strain PNUSAS354838 SAMN35684052-rid18352423.guided.17, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFYF010000012.1 Salmonella enterica strain PNUSAS354838 SAMN35684052-rid18352423.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOFYF010000015.1 Salmonella enterica strain PNUSAS354838 SAMN35684052-rid18352423.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABOFYF010000002.1	585342..586211	99.54	870	0						
GCA_032952835.1_PDT001774267.1_genomic.fna	Salmonella_enterica	0.5216	711.082 KB	3	aroC_81,dnaN_283,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	909	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_283	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFYH010000001.1 Salmonella enterica strain PNUSAS354830 SAMN35684042-rid18352403.denovo.01, whole genome shotgun sequence	485824..486261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFYH010000025.1 Salmonella enterica strain PNUSAS354830 SAMN35684042-rid18352403.guided.19, whole genome shotgun sequence	8847..9284	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFYH010000003.1	563402..564271	99.31	870	0						
GCA_032952875.1_PDT001774268.1_genomic.fna	Salmonella_enterica	0.5212	412.518 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFYG010000001.1 Salmonella enterica strain PNUSAS354834 SAMN35684051-rid18352413.denovo.01, whole genome shotgun sequence	815075..815512	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFYG010000021.1 Salmonella enterica strain PNUSAS354834 SAMN35684051-rid18352413.guided.13, whole genome shotgun sequence	40027..40464	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFYG010000016.1 Salmonella enterica strain PNUSAS354834 SAMN35684051-rid18352413.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOFYG010000013.1 Salmonella enterica strain PNUSAS354834 SAMN35684051-rid18352413.denovo.14, whole genome shotgun sequence	3859..4120																																																avrA	ABOFYG010000002.1	553182..554051	99.54	870	0						
GCA_032952915.1_PDT001774266.1_genomic.fna	Salmonella_enterica	0.5212	729.43 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFYI010000001.1 Salmonella enterica strain PNUSAS354835 SAMN35684043-rid18352393.denovo.01, whole genome shotgun sequence	770002..770439	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFYI010000023.1 Salmonella enterica strain PNUSAS354835 SAMN35684043-rid18352393.guided.17, whole genome shotgun sequence	11633..12070	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABOFYI010000018.1 Salmonella enterica strain PNUSAS354835 SAMN35684043-rid18352393.denovo.21, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFYI010000016.1 Salmonella enterica strain PNUSAS354835 SAMN35684043-rid18352393.denovo.19, whole genome shotgun sequence	6825..7467		enterobacteriales	IncFII(S)	100	262 / 262	ABOFYI010000013.1 Salmonella enterica strain PNUSAS354835 SAMN35684043-rid18352393.denovo.14, whole genome shotgun sequence	37108..37369																																									avrA	ABOFYI010000003.1	553636..554505	99.54	870	0						
GCA_032952955.1_PDT001774264.1_genomic.fna	Salmonella_enterica	0.521	729.707 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFYK010000001.1 Salmonella enterica strain PNUSAS354840 SAMN35684044-rid18352373.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFYK010000021.1 Salmonella enterica strain PNUSAS354840 SAMN35684044-rid18352373.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFYK010000015.1 Salmonella enterica strain PNUSAS354840 SAMN35684044-rid18352373.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOFYK010000012.1 Salmonella enterica strain PNUSAS354840 SAMN35684044-rid18352373.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABOFYK010000003.1	553642..554511	99.54	870	0						
GCA_032952995.1_PDT001774265.1_genomic.fna	Salmonella_enterica	0.5217	257.542 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFYJ010000001.1 Salmonella enterica strain PNUSAS354829 SAMN35684041-rid18352383.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFYJ010000055.1 Salmonella enterica strain PNUSAS354829 SAMN35684041-rid18352383.guided.26, whole genome shotgun sequence	22250..22687	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABOFYJ010000040.1 Salmonella enterica strain PNUSAS354829 SAMN35684041-rid18352383.denovo.43, whole genome shotgun sequence	3981..4111																																																						avrA	ABOFYJ010000005.1	94139..95007	99.77	870	0						
GCA_032953015.1_PDT001774262.1_genomic.fna	Salmonella_enterica	0.5206	406.452 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		4	IncFIB(S),IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFYN010000001.1 Salmonella enterica strain PNUSAS354828 SAMN35684048-rid18352353.denovo.01, whole genome shotgun sequence	774552..774989	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOFYN010000019.1 Salmonella enterica strain PNUSAS354828 SAMN35684048-rid18352353.denovo.21, whole genome shotgun sequence	9260..10096	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFYN010000019.1 Salmonella enterica strain PNUSAS354828 SAMN35684048-rid18352353.denovo.21, whole genome shotgun sequence	10096..10899	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOFYN010000031.1 Salmonella enterica strain PNUSAS354828 SAMN35684048-rid18352353.guided.20, whole genome shotgun sequence	7213..8049	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOFYN010000031.1 Salmonella enterica strain PNUSAS354828 SAMN35684048-rid18352353.guided.20, whole genome shotgun sequence	6410..7213	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABOFYN010000033.1 Salmonella enterica strain PNUSAS354828 SAMN35684048-rid18352353.guided.27, whole genome shotgun sequence	3250..3687	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOFYN010000024.1 Salmonella enterica strain PNUSAS354828 SAMN35684048-rid18352353.denovo.29, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOFYN010000034.1 Salmonella enterica strain PNUSAS354828 SAMN35684048-rid18352353.guided.28, whole genome shotgun sequence	3944..4804	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOFYN010000019.1 Salmonella enterica strain PNUSAS354828 SAMN35684048-rid18352353.denovo.21, whole genome shotgun sequence	10960..11775	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOFYN010000031.1 Salmonella enterica strain PNUSAS354828 SAMN35684048-rid18352353.guided.20, whole genome shotgun sequence	5534..6349	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOFYN010000019.1 Salmonella enterica strain PNUSAS354828 SAMN35684048-rid18352353.denovo.21, whole genome shotgun sequence	15288..16487	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFYN010000031.1 Salmonella enterica strain PNUSAS354828 SAMN35684048-rid18352353.guided.20, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFYN010000020.1 Salmonella enterica strain PNUSAS354828 SAMN35684048-rid18352353.denovo.22, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOFYN010000014.1 Salmonella enterica strain PNUSAS354828 SAMN35684048-rid18352353.denovo.14, whole genome shotgun sequence	37108..37369		enterobacteriales	IncN	100	514 / 514	ABOFYN010000022.1 Salmonella enterica strain PNUSAS354828 SAMN35684048-rid18352353.denovo.24, whole genome shotgun sequence	654..1167		enterobacteriales	IncX1	98.66	374 / 374	ABOFYN010000015.1 Salmonella enterica strain PNUSAS354828 SAMN35684048-rid18352353.denovo.15, whole genome shotgun sequence	6057..6430																																		avrA	ABOFYN010000002.1	552981..553850	99.54	870	0						
GCA_032953095.1_PDT001774261.1_genomic.fna	Salmonella_enterica	0.5218	257.839 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOFYM010000002.1 Salmonella enterica strain PNUSAS354839 SAMN35684046-rid18352343.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOFYM010000046.1 Salmonella enterica strain PNUSAS354839 SAMN35684046-rid18352343.guided.30, whole genome shotgun sequence	8535..8972	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOFYM010000024.1 Salmonella enterica strain PNUSAS354839 SAMN35684046-rid18352343.denovo.24, whole genome shotgun sequence	44732..45374	enterobacteriales	IncFII(S)	100	262 / 262	ABOFYM010000024.1 Salmonella enterica strain PNUSAS354839 SAMN35684046-rid18352343.denovo.24, whole genome shotgun sequence	29386..29647																																																avrA	ABOFYM010000005.1	175018..175886	100	869	0						
GCA_032953115.1_PDT001774263.1_genomic.fna	Salmonella_enterica	0.5212	605.388 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOFYL010000001.1 Salmonella enterica strain PNUSAS354831 SAMN35684047-rid18352363.denovo.01, whole genome shotgun sequence	690374..690811	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOFYL010000019.1 Salmonella enterica strain PNUSAS354831 SAMN35684047-rid18352363.guided.13, whole genome shotgun sequence	17516..17953	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOFYL010000002.1	160440..161309	99.54	870	0						
GCA_032953175.1_PDT001774260.1_genomic.fna	Salmonella_enterica	0.521	489.738 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFYO010000001.1 Salmonella enterica strain PNUSAS354837 SAMN35684040-rid18352333.denovo.01, whole genome shotgun sequence	810630..811067	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFYO010000031.1 Salmonella enterica strain PNUSAS354837 SAMN35684040-rid18352333.guided.23, whole genome shotgun sequence	213..650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFYO010000018.1 Salmonella enterica strain PNUSAS354837 SAMN35684040-rid18352333.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOFYO010000019.1 Salmonella enterica strain PNUSAS354837 SAMN35684040-rid18352333.denovo.21, whole genome shotgun sequence	3391..3652																																																avrA	ABOFYO010000002.1	553187..554056	99.54	870	0						
GCA_032956255.1_PDT001951307.1_genomic.fna	Salmonella_enterica	0.5216	116.155 KB	13	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	4	Col(pHAD28),Col(pHAD28),Col440I,IncFII(p96A),IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOFYW010000041.1 Salmonella enterica strain FDA1227903-C001-001 SAMN37927082-rid19932363.denovo.42, whole genome shotgun sequence	20745..21182	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOFYW010000081.1 Salmonella enterica strain FDA1227903-C001-001 SAMN37927082-rid19932363.guided.59, whole genome shotgun sequence	7227..7664	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOFYW010000062.1 Salmonella enterica strain FDA1227903-C001-001 SAMN37927082-rid19932363.denovo.65, whole genome shotgun sequence	371..501	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFYW010000068.1 Salmonella enterica strain FDA1227903-C001-001 SAMN37927082-rid19932363.denovo.71, whole genome shotgun sequence	1703..1833		enterobacteriales	Col440I	91.74	109 / 114	ABOFYW010000065.1 Salmonella enterica strain FDA1227903-C001-001 SAMN37927082-rid19932363.denovo.68, whole genome shotgun sequence	2246..2354		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOFYW010000035.1 Salmonella enterica strain FDA1227903-C001-001 SAMN37927082-rid19932363.denovo.35, whole genome shotgun sequence	18629..19162		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOFYW010000032.1 Salmonella enterica strain FDA1227903-C001-001 SAMN37927082-rid19932363.denovo.32, whole genome shotgun sequence	8690..8831																											avrA	ABOFYW010000012.1	71401..72270	99.425	870	0						
GCA_032956315.1_PDT001951306.1_genomic.fna	Salmonella_enterica	0.522	137.222 KB	12	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col440I,IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOFYX010000039.1 Salmonella enterica strain FDA1227903-C001-003 SAMN37927083-rid19932353.denovo.39, whole genome shotgun sequence	20746..21183	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOFYX010000090.1 Salmonella enterica strain FDA1227903-C001-003 SAMN37927083-rid19932353.guided.47, whole genome shotgun sequence	15359..15796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOFYX010000059.1 Salmonella enterica strain FDA1227903-C001-003 SAMN37927083-rid19932353.denovo.62, whole genome shotgun sequence	371..501	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOFYX010000067.1 Salmonella enterica strain FDA1227903-C001-003 SAMN37927083-rid19932353.denovo.70, whole genome shotgun sequence	1703..1833		enterobacteriales	Col440I	91.74	109 / 114	ABOFYX010000062.1 Salmonella enterica strain FDA1227903-C001-003 SAMN37927083-rid19932353.denovo.65, whole genome shotgun sequence	2246..2354		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOFYX010000035.1 Salmonella enterica strain FDA1227903-C001-003 SAMN37927083-rid19932353.denovo.35, whole genome shotgun sequence	18619..19152																																		avrA	ABOFYX010000013.1	71401..72270	99.425	870	0						
GCA_032956335.1_PDT001951304.1_genomic.fna	Salmonella_enterica	0.5211	516.357 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFYZ010000001.1 Salmonella enterica strain PNUSAS394216 SAMN37926068-rid19932333.denovo.01, whole genome shotgun sequence	774365..774802	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFYZ010000021.1 Salmonella enterica strain PNUSAS394216 SAMN37926068-rid19932333.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFYZ010000016.1 Salmonella enterica strain PNUSAS394216 SAMN37926068-rid19932333.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOFYZ010000017.1 Salmonella enterica strain PNUSAS394216 SAMN37926068-rid19932333.denovo.20, whole genome shotgun sequence	3420..3681																																																avrA	ABOFYZ010000002.1	553627..554496	99.54	870	0						
GCA_032956355.1_PDT001951300.1_genomic.fna	Salmonella_enterica	0.5198	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOFYY010000010.1 Salmonella enterica strain PNUSAS394219 SAMN37926065-rid19932293.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOFYY010000058.1 Salmonella enterica strain PNUSAS394219 SAMN37926065-rid19932293.guided.40, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032956395.1_PDT001951293.1_genomic.fna	Salmonella_enterica	0.5216	693.645 KB	2	aroC_179,dnaN_160,hemD_10,hisD_122,purE_61,sucA_8,thrA_157	531	8:i:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_179	dnaN	100	100	dnaN_160	hemD	100	100	hemD_10	hisD	100	100	hisD_122	purE	100	100	purE_61	sucA	100	100	sucA_8	thrA	100	100	thrA_157	8	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	Takoradi or Bargny	The predicted serotypes share the same general formula: 8:i:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOFZB010000001.1 Salmonella enterica strain PNUSAS394190 SAMN37925635-rid19932223.denovo.01, whole genome shotgun sequence	656168..656605	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOFZB010000019.1 Salmonella enterica strain PNUSAS394190 SAMN37925635-rid19932223.guided.15, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFZB010000002.1	542255..543124	99.08	870	0						
GCA_032956415.1_PDT001951291.1_genomic.fna	Salmonella_enterica	0.5215	430.195 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFZC010000001.1 Salmonella enterica strain PNUSAS394196 SAMN37925630-rid19932203.denovo.01, whole genome shotgun sequence	560095..560532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFZC010000028.1 Salmonella enterica strain PNUSAS394196 SAMN37925630-rid19932203.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFZC010000009.1	174045..174913	99.195	870	0						
GCA_032956435.1_PDT001951287.1_genomic.fna	Salmonella_enterica	0.5217	366.742 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFZD010000001.1 Salmonella enterica strain PNUSAS394192 SAMN37925633-rid19932163.denovo.01, whole genome shotgun sequence	560720..561157	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOFZD010000029.1 Salmonella enterica strain PNUSAS394192 SAMN37925633-rid19932163.guided.24, whole genome shotgun sequence	2371..2808	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFZD010000009.1	174057..174925	99.195	870	0						
GCA_032956475.1_PDT001951266.1_genomic.fna	Salmonella_enterica	0.5213	386.599 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOFZG010000001.1 Salmonella enterica strain PNUSAS394151 SAMN37925446-rid19931953.denovo.01, whole genome shotgun sequence	643795..644232	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOFZG010000021.1 Salmonella enterica strain PNUSAS394151 SAMN37925446-rid19931953.guided.15, whole genome shotgun sequence	7602..8039	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032956495.1_PDT001951276.1_genomic.fna	Salmonella_enterica	0.5222	301.234 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOFZF010000002.1 Salmonella enterica strain PNUSAS394191 SAMN37925629-rid19932053.denovo.02, whole genome shotgun sequence	293540..293977	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOFZF010000029.1 Salmonella enterica strain PNUSAS394191 SAMN37925629-rid19932053.guided.24, whole genome shotgun sequence	3667..4104	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(S)	93.16	643 / 643	ABOFZF010000016.1 Salmonella enterica strain PNUSAS394191 SAMN37925629-rid19932053.denovo.16, whole genome shotgun sequence	45760..46402	enterobacteriales	IncFII(S)	97.34	263 / 262	ABOFZF010000016.1 Salmonella enterica strain PNUSAS394191 SAMN37925629-rid19932053.denovo.16, whole genome shotgun sequence	8613..8872																																																avrA	ABOFZF010000001.1	557666..558534	99.425	870	0						
GCA_032956515.1_PDT001951263.1_genomic.fna	Salmonella_enterica	0.5214	272.696 KB	6	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOFZI010000001.1 Salmonella enterica strain PNUSAS394154 SAMN37925449-rid19931923.denovo.01, whole genome shotgun sequence	482599..483036	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOFZI010000046.1 Salmonella enterica strain PNUSAS394154 SAMN37925449-rid19931923.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOFZI010000027.1 Salmonella enterica strain PNUSAS394154 SAMN37925449-rid19931923.denovo.27, whole genome shotgun sequence	24674..25316	enterobacteriales	IncFII(S)	100	262 / 262	ABOFZI010000027.1 Salmonella enterica strain PNUSAS394154 SAMN37925449-rid19931923.denovo.27, whole genome shotgun sequence	9328..9589																																																avrA	ABOFZI010000002.1	281123..281992	99.885	870	0						
GCA_032956535.1_PDT001951265.1_genomic.fna	Salmonella_enterica	0.5212	489.844 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFZH010000001.1 Salmonella enterica strain PNUSAS394155 SAMN37925447-rid19931943.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFZH010000034.1 Salmonella enterica strain PNUSAS394155 SAMN37925447-rid19931943.guided.20, whole genome shotgun sequence	10129..10566	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFZH010000024.1 Salmonella enterica strain PNUSAS394155 SAMN37925447-rid19931943.denovo.27, whole genome shotgun sequence	2930..3572	enterobacteriales	IncFII(S)	100	262 / 262	ABOFZH010000022.1 Salmonella enterica strain PNUSAS394155 SAMN37925447-rid19931943.denovo.25, whole genome shotgun sequence	3381..3642																																																avrA	ABOFZH010000002.1	553181..554050	99.54	870	0						
GCA_032957275.1_PDT001951301.1_genomic.fna	Salmonella_enterica	0.5212	195.17 KB	10	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOFZO010000031.1 Salmonella enterica strain PNUSAS394217 SAMN37926071-rid19932303.denovo.32, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABOFZO010000076.1 Salmonella enterica strain PNUSAS394217 SAMN37926071-rid19932303.guided.52, whole genome shotgun sequence	7578..8015	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABOFZO010000022.1 Salmonella enterica strain PNUSAS394217 SAMN37926071-rid19932303.denovo.22, whole genome shotgun sequence	68874..69135																																																						avrA	ABOFZO010000005.1	93997..94866	98.966	870	0						
GCA_032957295.1_PDT001951302.1_genomic.fna	Salmonella_enterica	0.5221	215.934 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOFZN010000001.1 Salmonella enterica strain PNUSAS394215 SAMN37926066-rid19932313.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOFZN010000027.1 Salmonella enterica strain PNUSAS394215 SAMN37926066-rid19932313.denovo.27, whole genome shotgun sequence	1052..1843	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFZN010000027.1 Salmonella enterica strain PNUSAS394215 SAMN37926066-rid19932313.denovo.27, whole genome shotgun sequence	1052..1843	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOFZN010000038.1 Salmonella enterica strain PNUSAS394215 SAMN37926066-rid19932313.denovo.42, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOFZN010000038.1 Salmonella enterica strain PNUSAS394215 SAMN37926066-rid19932313.denovo.42, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABOFZN010000052.1 Salmonella enterica strain PNUSAS394215 SAMN37926066-rid19932313.guided.33, whole genome shotgun sequence	1093..1884	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOFZN010000052.1 Salmonella enterica strain PNUSAS394215 SAMN37926066-rid19932313.guided.33, whole genome shotgun sequence	1093..1884	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOFZN010000054.1 Salmonella enterica strain PNUSAS394215 SAMN37926066-rid19932313.guided.37, whole genome shotgun sequence	4957..5394	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOFZN010000056.1 Salmonella enterica strain PNUSAS394215 SAMN37926066-rid19932313.guided.44, whole genome shotgun sequence	263..1288	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOFZN010000057.1 Salmonella enterica strain PNUSAS394215 SAMN37926066-rid19932313.guided.53, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABOFZN010000027.1 Salmonella enterica strain PNUSAS394215 SAMN37926066-rid19932313.denovo.27, whole genome shotgun sequence	2348..3187	Sulfamethoxazole	U12338	sul1	100	840/840	ABOFZN010000052.1 Salmonella enterica strain PNUSAS394215 SAMN37926066-rid19932313.guided.33, whole genome shotgun sequence	2389..3228	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOFZN010000027.1 Salmonella enterica strain PNUSAS394215 SAMN37926066-rid19932313.denovo.27, whole genome shotgun sequence	15704..16903	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOFZN010000052.1 Salmonella enterica strain PNUSAS394215 SAMN37926066-rid19932313.guided.33, whole genome shotgun sequence	15745..16944	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOFZN010000030.1 Salmonella enterica strain PNUSAS394215 SAMN37926066-rid19932313.denovo.30, whole genome shotgun sequence	9109..9668																																																						avrA	ABOFZN010000003.1	149651..150520	99.655	870	0						
GCA_032957315.1_PDT001951288.1_genomic.fna	Salmonella_enterica	0.5112	330.628 KB	6	aroC_145,dnaN_26,hemD_30,hisD_55,purE_21,sucA_87,thrA_28	1006	35:r:e,n,x,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_145	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_55	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_28	35	r	e,n,x,z15	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 35:r:e,n,x,z15		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFZQ010000001.1 Salmonella enterica strain PNUSAS394195 SAMN37925636-rid19932173.denovo.01, whole genome shotgun sequence	173905..174341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOFZQ010000042.1 Salmonella enterica strain PNUSAS394195 SAMN37925636-rid19932173.guided.26, whole genome shotgun sequence	2179..2615	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFZQ010000006.1	154900..155769	96.437	870	0						
GCA_032957375.1_PDT001951284.1_genomic.fna	Salmonella_enterica	0.5139	358.96 KB	6	aroC_33,dnaN_26,hemD_30,hisD_26,purE_21,sucA_32,thrA_28	63	60:r:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_32	thrA	100	100	thrA_28	60	r	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 60:r:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOFZS010000006.1 Salmonella enterica strain PNUSAS394197 SAMN37925637-rid19932133.denovo.06, whole genome shotgun sequence	239368..239805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOFZS010000049.1 Salmonella enterica strain PNUSAS394197 SAMN37925637-rid19932133.guided.31, whole genome shotgun sequence	9508..9945	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOFZS010000001.1	121843..122712	96.322	870	0						
GCA_032957415.1_PDT001951278.1_genomic.fna	Salmonella_enterica	0.5198	178.357 KB	9	aroC_45,dnaN_14,hemD_82,hisD_9,purE_128,sucA_6,thrA_34	407	13:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_14	hemD	100	100	hemD_82	hisD	100	100	hisD_9	purE	100	100	purE_128	sucA	100	100	sucA_6	thrA	100	100	thrA_34	13	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Kintambo		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOFZU010000022.1 Salmonella enterica strain PNUSAS394193 SAMN37925631-rid19932073.denovo.22, whole genome shotgun sequence	37439..37876	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.54	410/438	ABOFZU010000056.1 Salmonella enterica strain PNUSAS394193 SAMN37925631-rid19932073.guided.41, whole genome shotgun sequence	1..410	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032957455.1_PDT001951264.1_genomic.fna	Salmonella_enterica	0.5212	489.863 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOFZV010000001.1 Salmonella enterica strain PNUSAS394150 SAMN37925448-rid19931933.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.33	381/438	ABOFZV010000027.1 Salmonella enterica strain PNUSAS394150 SAMN37925448-rid19931933.guided.19, whole genome shotgun sequence	1..381	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOFZV010000013.1 Salmonella enterica strain PNUSAS394150 SAMN37925448-rid19931933.denovo.14, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABOFZV010000017.1 Salmonella enterica strain PNUSAS394150 SAMN37925448-rid19931933.denovo.20, whole genome shotgun sequence	3395..3656																																																avrA	ABOFZV010000002.1	553572..554441	99.54	870	0						
GCA_032959265.1_PDT001951295.1_genomic.fna	Salmonella_enterica	0.5228	354.094 KB	5	aroC_46,dnaN_54,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	127	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_54	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOFZY010000001.1 Salmonella enterica strain PNUSAS394214 SAMN37926069-rid19932243.denovo.01, whole genome shotgun sequence	157844..158281	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOFZY010000028.1 Salmonella enterica strain PNUSAS394214 SAMN37926069-rid19932243.guided.23, whole genome shotgun sequence	2627..3064	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOFZY010000015.1 Salmonella enterica strain PNUSAS394214 SAMN37926069-rid19932243.denovo.15, whole genome shotgun sequence	67778..67919																																																						avrA	ABOFZY010000005.1	173523..174392	99.31	870	0						
GCA_032959345.1_PDT001951268.1_genomic.fna	Salmonella_enterica	0.5205	238.812 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		3	Col(pHAD28),Col(pHAD28),Col440II,IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGAB010000001.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.denovo.01, whole genome shotgun sequence	474340..474777	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOGAB010000036.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.denovo.40, whole genome shotgun sequence	555..1370	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(6)-Id	100	837/837	ABOGAB010000037.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.denovo.42, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGAB010000037.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.denovo.42, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOGAB010000050.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.guided.31, whole genome shotgun sequence	31702..32139	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGAB010000053.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.guided.41, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGAB010000053.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.guided.41, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOGAB010000054.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.guided.45, whole genome shotgun sequence	762..1577	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	blaTEM-1B	100	861/861	ABOGAB010000040.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.denovo.47, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOGAB010000055.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.guided.46, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOGAB010000037.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.denovo.42, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOGAB010000053.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.guided.41, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOGAB010000031.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.denovo.34, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGAB010000052.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.guided.35, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABOGAB010000033.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.denovo.37, whole genome shotgun sequence	1326..1445	enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABOGAB010000038.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.denovo.43, whole genome shotgun sequence	846..974		enterobacteriales	Col440II	97.87	282 / 282	ABOGAB010000038.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.denovo.43, whole genome shotgun sequence	1551..1832		enterobacteriales	IncY	99.74	765 / 765	ABOGAB010000017.1 Salmonella enterica strain PNUSAS394152 SAMN37925450-rid19931973.denovo.17, whole genome shotgun sequence	63874..64638																																		avrA	ABOGAB010000009.1	93863..94732	99.885	870	0						
GCA_032962245.1_PDT001951286.1_genomic.fna	Salmonella_enterica	0.5191	370.853 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOGAC010000001.1 Salmonella enterica strain PNUSAS394198 SAMN37925632-rid19932153.denovo.01, whole genome shotgun sequence	232864..233301	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOGAC010000030.1 Salmonella enterica strain PNUSAS394198 SAMN37925632-rid19932153.guided.16, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOGAC010000023.1 Salmonella enterica strain PNUSAS394198 SAMN37925632-rid19932153.denovo.26, whole genome shotgun sequence	239..369																																																						avrA	ABOGAC010000002.1	561362..562231	99.425	870	0						
GCA_032964365.1_PDT001773744.1_genomic.fna	Salmonella_enterica	0.521	404.117 KB	5	aroC_173,dnaN_293,hemD_21,hisD_639,purE_115,sucA_12,thrA_293	2390	1,3,19:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_173	dnaN	100	100	dnaN_293	hemD	100	100	hemD_21	hisD	100	100	hisD_639	purE	100	100	purE_115	sucA	100	100	sucA_12	thrA	100	100	thrA_293	1,3,19	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Cannstatt		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOGAL010000001.1 Salmonella enterica subsp. enterica serovar Cannstatt strain FSIS32309683 SAMN35679988-rid18347083.denovo.01, whole genome shotgun sequence	86147..86584	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOGAL010000034.1 Salmonella enterica subsp. enterica serovar Cannstatt strain FSIS32309683 SAMN35679988-rid18347083.guided.22, whole genome shotgun sequence	14078..14515	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGAL010000003.1	439633..440502	99.655	870	0						
GCA_032964425.1_PDT001773742.1_genomic.fna	Salmonella_enterica	0.5227	269.486 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGAN010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309685 SAMN35679928-rid18347063.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGAN010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309685 SAMN35679928-rid18347063.guided.19, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGAN010000002.1	149828..150697	99.655	870	0						
GCA_032964445.1_PDT001773740.1_genomic.fna	Salmonella_enterica	0.522	253.11 KB	5	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGAP010000001.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32309684 SAMN35679927-rid18347043.denovo.01, whole genome shotgun sequence	346600..347037	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGAP010000048.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32309684 SAMN35679927-rid18347043.guided.23, whole genome shotgun sequence	8690..9127	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOGAP010000033.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32309684 SAMN35679927-rid18347043.denovo.36, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABOGAP010000030.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32309684 SAMN35679927-rid18347043.denovo.33, whole genome shotgun sequence	3175..3285																																																avrA	ABOGAP010000004.1	94221..95090	99.425	870	0						
GCA_032964525.1_PDT001773736.1_genomic.fna	Salmonella_enterica	0.5219	48.46 KB	33	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGAT010000063.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313087 SAMN35679920-rid18347003.denovo.064, whole genome shotgun sequence	12472..12909	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGAT010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313087 SAMN35679920-rid18347003.denovo.124, whole genome shotgun sequence	4175..5011	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGAT010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313087 SAMN35679920-rid18347003.denovo.124, whole genome shotgun sequence	5011..5814	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOGAT010000246.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313087 SAMN35679920-rid18347003.guided.069, whole genome shotgun sequence	14098..14535	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGAT010000248.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313087 SAMN35679920-rid18347003.guided.138, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGAT010000248.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313087 SAMN35679920-rid18347003.guided.138, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOGAT010000207.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313087 SAMN35679920-rid18347003.denovo.212, whole genome shotgun sequence	62..1267	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGAT010000249.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313087 SAMN35679920-rid18347003.guided.206, whole genome shotgun sequence	93..1298	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOGAT010000158.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313087 SAMN35679920-rid18347003.denovo.162, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABOGAT010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313087 SAMN35679920-rid18347003.denovo.124, whole genome shotgun sequence	3291..3552		enterobacteriales	IncFII	96.95	262 / 261	ABOGAT010000248.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313087 SAMN35679920-rid18347003.guided.138, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOGAT010000185.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313087 SAMN35679920-rid18347003.denovo.189, whole genome shotgun sequence	224..365		enterobacteriales	IncX1	100	373 / 373	ABOGAT010000194.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313087 SAMN35679920-rid18347003.denovo.198, whole genome shotgun sequence	1129..1501																											avrA	ABOGAT010000036.1	39484..40353	99.655	870	0						
GCA_032964605.1_PDT001773732.1_genomic.fna	Salmonella_enterica	0.524	44.48 KB	36	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGAW010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313088 SAMN35679925-rid18346963.denovo.061, whole genome shotgun sequence	12492..12929	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGAW010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313088 SAMN35679925-rid18346963.denovo.114, whole genome shotgun sequence	11944..12735	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGAW010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313088 SAMN35679925-rid18346963.denovo.114, whole genome shotgun sequence	11944..12735	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOGAW010000229.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313088 SAMN35679925-rid18346963.guided.066, whole genome shotgun sequence	14102..14539	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGAW010000231.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313088 SAMN35679925-rid18346963.guided.124, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGAW010000231.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313088 SAMN35679925-rid18346963.guided.124, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOGAW010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313088 SAMN35679925-rid18346963.denovo.114, whole genome shotgun sequence	10600..11439	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGAW010000231.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313088 SAMN35679925-rid18346963.guided.124, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOGAW010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313088 SAMN35679925-rid18346963.denovo.129, whole genome shotgun sequence	1796..2995	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGAW010000233.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313088 SAMN35679925-rid18346963.guided.151, whole genome shotgun sequence	1827..3026	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGAW010000137.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313088 SAMN35679925-rid18346963.denovo.140, whole genome shotgun sequence	5309..5868																																																						avrA	ABOGAW010000015.1	61410..62279	99.655	870	0						
GCA_032964625.1_PDT001773731.1_genomic.fna	Salmonella_enterica	0.5225	45.165 KB	38	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGAY010000016.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313085 SAMN35679915-rid18346953.denovo.016, whole genome shotgun sequence	11314..11751	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGAY010000152.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313085 SAMN35679915-rid18346953.denovo.155, whole genome shotgun sequence	1999..2835	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOGAY010000152.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313085 SAMN35679915-rid18346953.denovo.155, whole genome shotgun sequence	2835..3638	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOGAY010000278.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313085 SAMN35679915-rid18346953.guided.081, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGAY010000281.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313085 SAMN35679915-rid18346953.guided.156, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOGAY010000281.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313085 SAMN35679915-rid18346953.guided.156, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOGAY010000196.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313085 SAMN35679915-rid18346953.denovo.201, whole genome shotgun sequence	1683..2888	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGAY010000282.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313085 SAMN35679915-rid18346953.guided.198, whole genome shotgun sequence	1714..2919	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOGAY010000178.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313085 SAMN35679915-rid18346953.denovo.182, whole genome shotgun sequence	1155..1836	enterobacteriales	IncFII	96.95	262 / 261	ABOGAY010000152.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313085 SAMN35679915-rid18346953.denovo.155, whole genome shotgun sequence	1115..1376		enterobacteriales	IncFII	96.95	262 / 261	ABOGAY010000281.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313085 SAMN35679915-rid18346953.guided.156, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOGAY010000179.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313085 SAMN35679915-rid18346953.denovo.183, whole genome shotgun sequence	72..213		enterobacteriales	IncX1	100	373 / 373	ABOGAY010000222.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313085 SAMN35679915-rid18346953.denovo.227, whole genome shotgun sequence	1118..1490																											avrA	ABOGAY010000041.1	39471..40340	99.655	870	0						
GCA_032964705.1_PDT001773728.1_genomic.fna	Salmonella_enterica	0.5222	39.439 KB	36	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGBB010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313086 SAMN35679914-rid18346923.denovo.060, whole genome shotgun sequence	11516..11953	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOGBB010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313086 SAMN35679914-rid18346923.denovo.169, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOGBB010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313086 SAMN35679914-rid18346923.denovo.169, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOGBB010000231.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313086 SAMN35679914-rid18346923.guided.095, whole genome shotgun sequence	15577..16014	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOGBB010000234.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313086 SAMN35679914-rid18346923.guided.176, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOGBB010000234.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313086 SAMN35679914-rid18346923.guided.176, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOGBB010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313086 SAMN35679914-rid18346923.denovo.155, whole genome shotgun sequence	1591..2804	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOGBB010000235.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313086 SAMN35679914-rid18346923.guided.181, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	dfrA14	100	474/474	ABOGBB010000184.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313086 SAMN35679914-rid18346923.denovo.189, whole genome shotgun sequence	96..569	Trimethoprim	AF393510	dfrA14	100	474/474	ABOGBB010000236.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313086 SAMN35679914-rid18346923.guided.190, whole genome shotgun sequence	127..600	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGBB010000182.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313086 SAMN35679914-rid18346923.denovo.187, whole genome shotgun sequence	657..1216																																																						avrA	ABOGBB010000082.1	19123..19992	99.655	870	0						
GCA_032964765.1_PDT001773725.1_genomic.fna	Salmonella_enterica	0.5239	58.989 KB	27	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGBD010000021.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313082 SAMN35679913-rid18346893.denovo.021, whole genome shotgun sequence	17249..17686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGBD010000188.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313082 SAMN35679913-rid18346893.guided.063, whole genome shotgun sequence	7358..7795	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGBD010000105.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313082 SAMN35679913-rid18346893.denovo.108, whole genome shotgun sequence	6827..7469	enterobacteriales	IncFII(S)	100	262 / 262	ABOGBD010000128.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313082 SAMN35679913-rid18346893.denovo.131, whole genome shotgun sequence	3415..3676																																																avrA	ABOGBD010000013.1	81597..82466	99.54	870	0						
GCA_032964865.1_PDT001773719.1_genomic.fna	Salmonella_enterica	0.5225	75.979 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pHCM2),IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGBL010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.denovo.001, whole genome shotgun sequence	233715..234152	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGBL010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.denovo.066, whole genome shotgun sequence	22700..23491	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGBL010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.denovo.066, whole genome shotgun sequence	22700..23491	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOGBL010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.denovo.098, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOGBL010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.denovo.098, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOGBL010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.guided.033, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGBL010000144.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.guided.085, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGBL010000144.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.guided.085, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOGBL010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.guided.116, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOGBL010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.guided.116, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOGBL010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.denovo.124, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOGBL010000148.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.guided.129, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABOGBL010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.denovo.066, whole genome shotgun sequence	21356..22195	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGBL010000144.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.guided.085, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOGBL010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.denovo.066, whole genome shotgun sequence	7640..8839	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGBL010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.guided.095, whole genome shotgun sequence	2756..3955	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOGBL010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.denovo.107, whole genome shotgun sequence	106..579	Trimethoprim	AF393510	dfrA14	100	474/474	ABOGBL010000147.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.guided.119, whole genome shotgun sequence	137..610	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pHCM2)	97.29	884 / 875	ABOGBL010000016.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.denovo.016, whole genome shotgun sequence	17112..17995	enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGBL010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309686 SAMN35679894-rid18346853.denovo.080, whole genome shotgun sequence	14634..15193																																																avrA	ABOGBL010000005.1	124264..125133	99.655	870	0						
GCA_032964905.1_PDT001773717.1_genomic.fna	Salmonella_enterica	0.5218	91.075 KB	17	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGBN010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309689 SAMN35679897-rid18346843.denovo.04, whole genome shotgun sequence	47120..47557	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGBN010000099.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309689 SAMN35679897-rid18346843.guided.54, whole genome shotgun sequence	8093..8530	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGBN010000070.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309689 SAMN35679897-rid18346843.denovo.73, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOGBN010000065.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309689 SAMN35679897-rid18346843.denovo.68, whole genome shotgun sequence	3877..4138																																																avrA	ABOGBN010000029.1	61575..62444	99.54	870	0						
GCA_032965045.1_PDT001773703.1_genomic.fna	Salmonella_enterica	0.5222	43.303 KB	35	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	3	ColpVC,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGBY010000056.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.denovo.056, whole genome shotgun sequence	15415..15852	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOGBY010000077.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.denovo.078, whole genome shotgun sequence	5646..6448	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGBY010000077.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.denovo.078, whole genome shotgun sequence	5646..6449	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGBY010000077.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.denovo.078, whole genome shotgun sequence	5646..6449	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGBY010000077.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.denovo.078, whole genome shotgun sequence	5646..6449	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOGBY010000077.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.denovo.078, whole genome shotgun sequence	4906..5646	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOGBY010000077.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.denovo.078, whole genome shotgun sequence	4906..5646	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABOGBY010000250.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.guided.074, whole genome shotgun sequence	15052..15489	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOGBY010000252.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.guided.156, whole genome shotgun sequence	2617..3419	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGBY010000252.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.guided.156, whole genome shotgun sequence	2616..3419	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGBY010000252.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.guided.156, whole genome shotgun sequence	2616..3419	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGBY010000252.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.guided.156, whole genome shotgun sequence	2616..3419	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOGBY010000252.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.guided.156, whole genome shotgun sequence	3419..4159	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOGBY010000252.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.guided.156, whole genome shotgun sequence	3419..4159	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	96.89	193 / 193	ABOGBY010000191.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.denovo.195, whole genome shotgun sequence	1653..1845	enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOGBY010000156.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.denovo.159, whole genome shotgun sequence	1834..2515		enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABOGBY010000094.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309688 SAMN35679896-rid18346213.denovo.095, whole genome shotgun sequence	5117..5613																																									avrA	ABOGBY010000003.1	98543..99412	98.966	870	0						
GCA_032965225.1_PDT001773699.1_genomic.fna	Salmonella_enterica	0.5221	49.406 KB	31	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGCC010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309690 SAMN35679898-rid18346743.denovo.053, whole genome shotgun sequence	15570..16007	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGCC010000190.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309690 SAMN35679898-rid18346743.guided.084, whole genome shotgun sequence	7338..7775	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGCC010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309690 SAMN35679898-rid18346743.denovo.128, whole genome shotgun sequence	5312..5871																																																						avrA	ABOGCC010000009.1	83764..84633	99.655	870	0						
GCA_032965305.1_PDT001773697.1_genomic.fna	Salmonella_enterica	0.5234	50.115 KB	33	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGCD010000055.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313083 SAMN35679833-rid18346733.denovo.055, whole genome shotgun sequence	17219..17656	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGCD010000197.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313083 SAMN35679833-rid18346733.guided.075, whole genome shotgun sequence	15611..16048	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	90.08	131 / 131	ABOGCD010000143.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313083 SAMN35679833-rid18346733.denovo.146, whole genome shotgun sequence	254..384	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGCD010000159.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313083 SAMN35679833-rid18346733.denovo.162, whole genome shotgun sequence	1229..1871		enterobacteriales	IncFII(S)	100	262 / 262	ABOGCD010000134.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313083 SAMN35679833-rid18346733.denovo.137, whole genome shotgun sequence	3260..3521																																									avrA	ABOGCD010000014.1	61534..62403	99.54	870	0						
GCA_032965385.1_PDT001773690.1_genomic.fna	Salmonella_enterica	0.5227	50.825 KB	32	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGCM010000016.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309687 SAMN35679895-rid18346673.denovo.016, whole genome shotgun sequence	12401..12838	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGCM010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309687 SAMN35679895-rid18346673.denovo.068, whole genome shotgun sequence	22833..23624	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGCM010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309687 SAMN35679895-rid18346673.denovo.068, whole genome shotgun sequence	22833..23624	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOGCM010000199.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309687 SAMN35679895-rid18346673.guided.070, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGCM010000199.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309687 SAMN35679895-rid18346673.guided.070, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOGCM010000200.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309687 SAMN35679895-rid18346673.guided.098, whole genome shotgun sequence	15342..15779	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABOGCM010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309687 SAMN35679895-rid18346673.denovo.068, whole genome shotgun sequence	21489..22328	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGCM010000199.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309687 SAMN35679895-rid18346673.guided.070, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOGCM010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309687 SAMN35679895-rid18346673.denovo.068, whole genome shotgun sequence	7773..8972	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGCM010000199.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309687 SAMN35679895-rid18346673.guided.070, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGCM010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309687 SAMN35679895-rid18346673.denovo.161, whole genome shotgun sequence	995..1554																																																						avrA	ABOGCM010000009.1	93814..94683	99.655	870	0						
GCA_032965405.1_PDT001773691.1_genomic.fna	Salmonella_enterica	0.521	412.093 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	ABOGCL010000001.1 Salmonella enterica strain PNUSAS354825 SAMN35679842-rid18346683.denovo.01, whole genome shotgun sequence	492444..492881	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABOGCL010000030.1 Salmonella enterica strain PNUSAS354825 SAMN35679842-rid18346683.guided.19, whole genome shotgun sequence	12388..12825	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	ABOGCL010000021.1 Salmonella enterica strain PNUSAS354825 SAMN35679842-rid18346683.denovo.23, whole genome shotgun sequence	17570..17829																																																						avrA	ABOGCL010000002.1	504995..505864	99.54	870	0						
GCA_032965525.1_PDT001773681.1_genomic.fna	Salmonella_enterica	0.5204	400.837 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGCP010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309682 SAMN35679893-rid18346603.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGCP010000035.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309682 SAMN35679893-rid18346603.guided.15, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGCP010000026.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309682 SAMN35679893-rid18346603.denovo.29, whole genome shotgun sequence	1630..2272	enterobacteriales	IncFII(S)	100	262 / 262	ABOGCP010000023.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309682 SAMN35679893-rid18346603.denovo.26, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.93	374 / 374	ABOGCP010000016.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32309682 SAMN35679893-rid18346603.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABOGCP010000007.1	175109..175978	99.54	870	0						
GCA_032965545.1_PDT001773679.1_genomic.fna	Salmonella_enterica	0.5207	347.278 KB	6	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGCS010000002.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309680 SAMN35679874-rid18346583.denovo.02, whole genome shotgun sequence	86321..86758	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOGCS010000032.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309680 SAMN35679874-rid18346583.denovo.34, whole genome shotgun sequence	6510..7312	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGCS010000032.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309680 SAMN35679874-rid18346583.denovo.34, whole genome shotgun sequence	6510..7313	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGCS010000032.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309680 SAMN35679874-rid18346583.denovo.34, whole genome shotgun sequence	6510..7313	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGCS010000032.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309680 SAMN35679874-rid18346583.denovo.34, whole genome shotgun sequence	6510..7313	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOGCS010000032.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309680 SAMN35679874-rid18346583.denovo.34, whole genome shotgun sequence	5770..6510	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOGCS010000032.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309680 SAMN35679874-rid18346583.denovo.34, whole genome shotgun sequence	5770..6510	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABOGCS010000066.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309680 SAMN35679874-rid18346583.guided.28, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOGCS010000068.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309680 SAMN35679874-rid18346583.guided.41, whole genome shotgun sequence	2617..3419	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGCS010000068.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309680 SAMN35679874-rid18346583.guided.41, whole genome shotgun sequence	2616..3419	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGCS010000068.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309680 SAMN35679874-rid18346583.guided.41, whole genome shotgun sequence	2616..3419	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGCS010000068.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309680 SAMN35679874-rid18346583.guided.41, whole genome shotgun sequence	2616..3419	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOGCS010000068.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309680 SAMN35679874-rid18346583.guided.41, whole genome shotgun sequence	3419..4159	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOGCS010000068.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309680 SAMN35679874-rid18346583.guided.41, whole genome shotgun sequence	3419..4159	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOGCS010000034.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309680 SAMN35679874-rid18346583.denovo.36, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABOGCS010000023.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32309680 SAMN35679874-rid18346583.denovo.23, whole genome shotgun sequence	4946..5442																																																avrA	ABOGCS010000003.1	121617..122486	98.966	870	0						
GCA_032965625.1_PDT001773674.1_genomic.fna	Salmonella_enterica	0.5217	193.233 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGCY010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309681 SAMN35679872-rid18346543.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOGCY010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309681 SAMN35679872-rid18346543.denovo.44, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOGCY010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309681 SAMN35679872-rid18346543.denovo.44, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOGCY010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309681 SAMN35679872-rid18346543.guided.29, whole genome shotgun sequence	31297..31734	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOGCY010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309681 SAMN35679872-rid18346543.guided.50, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOGCY010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309681 SAMN35679872-rid18346543.guided.50, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOGCY010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309681 SAMN35679872-rid18346543.denovo.47, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOGCY010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309681 SAMN35679872-rid18346543.guided.46, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	tet(A)	100	1200/1200	ABOGCY010000030.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309681 SAMN35679872-rid18346543.denovo.32, whole genome shotgun sequence	9509..10708	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGCY010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309681 SAMN35679872-rid18346543.guided.37, whole genome shotgun sequence	9550..10749	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGCY010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309681 SAMN35679872-rid18346543.denovo.35, whole genome shotgun sequence	9109..9668																																																						avrA	ABOGCY010000002.1	95321..96190	99.655	870	0						
GCA_032965645.1_PDT001773675.1_genomic.fna	Salmonella_enterica	0.5219	354.37 KB	5	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOGCX010000004.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309679 SAMN35679873-rid18346553.denovo.04, whole genome shotgun sequence	254653..255090	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGCX010000028.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309679 SAMN35679873-rid18346553.denovo.33, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOGCX010000028.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309679 SAMN35679873-rid18346553.denovo.33, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGCX010000028.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309679 SAMN35679873-rid18346553.denovo.33, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGCX010000028.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309679 SAMN35679873-rid18346553.denovo.33, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGCX010000028.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309679 SAMN35679873-rid18346553.denovo.33, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOGCX010000043.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309679 SAMN35679873-rid18346553.guided.19, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGCX010000046.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309679 SAMN35679873-rid18346553.guided.31, whole genome shotgun sequence	1512..2348	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOGCX010000046.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309679 SAMN35679873-rid18346553.guided.31, whole genome shotgun sequence	710..1512	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGCX010000046.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309679 SAMN35679873-rid18346553.guided.31, whole genome shotgun sequence	709..1512	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGCX010000046.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309679 SAMN35679873-rid18346553.guided.31, whole genome shotgun sequence	709..1512	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGCX010000046.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309679 SAMN35679873-rid18346553.guided.31, whole genome shotgun sequence	709..1512	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOGCX010000030.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309679 SAMN35679873-rid18346553.denovo.35, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGCX010000047.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS32309679 SAMN35679873-rid18346553.guided.32, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGCX010000006.1	139874..140743	99.655	870	0						
GCA_032965745.1_PDT001773671.1_genomic.fna	Salmonella_enterica	0.5202	167.078 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGDA010000001.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309678 SAMN35679856-rid18346523.denovo.01, whole genome shotgun sequence	351660..352097	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGDA010000061.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309678 SAMN35679856-rid18346523.guided.35, whole genome shotgun sequence	18092..18529	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOGDA010000003.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309678 SAMN35679856-rid18346523.denovo.03, whole genome shotgun sequence	18000..18422	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOGDA010000063.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309678 SAMN35679856-rid18346523.guided.48, whole genome shotgun sequence	6430..6852	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOGDA010000048.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS32309678 SAMN35679856-rid18346523.denovo.52, whole genome shotgun sequence	186..316																																																						avrA	ABOGDA010000002.1	203313..204182	99.195	870	0						
GCA_032965825.1_PDT001773665.1_genomic.fna	Salmonella_enterica	0.5206	244.832 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGDF010000001.1 Salmonella enterica strain PNUSAS354826 SAMN35679841-rid18346473.denovo.01, whole genome shotgun sequence	728217..728654	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGDF010000037.1 Salmonella enterica strain PNUSAS354826 SAMN35679841-rid18346473.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGDF010000002.1	503307..504176	99.195	870	0						
GCA_032965845.1_PDT001773664.1_genomic.fna	Salmonella_enterica	0.5224	269.483 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGDG010000001.1 Salmonella enterica strain PNUSAS354827 SAMN35679843-rid18346463.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGDG010000035.1 Salmonella enterica strain PNUSAS354827 SAMN35679843-rid18346463.guided.20, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGDG010000003.1	39430..40299	99.655	870	0						
GCA_032965865.1_PDT001773662.1_genomic.fna	Salmonella_enterica	0.5231	46.433 KB	35	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGDH010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313084 SAMN35679837-rid18346453.denovo.084, whole genome shotgun sequence	12533..12970	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGDH010000205.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313084 SAMN35679837-rid18346453.guided.121, whole genome shotgun sequence	7383..7820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGDH010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313084 SAMN35679837-rid18346453.denovo.143, whole genome shotgun sequence	2145..2704																																																						avrA	ABOGDH010000029.1	48289..49158	99.655	870	0						
GCA_032965945.1_PDT001773653.1_genomic.fna	Salmonella_enterica	0.522	49.104 KB	31	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGDL010000006.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313080 SAMN35679826-rid18346103.denovo.006, whole genome shotgun sequence	85110..85547	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGDL010000152.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313080 SAMN35679826-rid18346103.denovo.156, whole genome shotgun sequence	106..942	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOGDL010000152.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313080 SAMN35679826-rid18346103.denovo.156, whole genome shotgun sequence	942..1744	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGDL010000152.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313080 SAMN35679826-rid18346103.denovo.156, whole genome shotgun sequence	942..1745	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGDL010000152.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313080 SAMN35679826-rid18346103.denovo.156, whole genome shotgun sequence	942..1745	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGDL010000152.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313080 SAMN35679826-rid18346103.denovo.156, whole genome shotgun sequence	942..1745	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABOGDL010000200.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313080 SAMN35679826-rid18346103.guided.062, whole genome shotgun sequence	15567..16004	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGDL010000203.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313080 SAMN35679826-rid18346103.guided.155, whole genome shotgun sequence	1546..2382	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOGDL010000203.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313080 SAMN35679826-rid18346103.guided.155, whole genome shotgun sequence	744..1546	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGDL010000203.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313080 SAMN35679826-rid18346103.guided.155, whole genome shotgun sequence	743..1546	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGDL010000203.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313080 SAMN35679826-rid18346103.guided.155, whole genome shotgun sequence	743..1546	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGDL010000203.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313080 SAMN35679826-rid18346103.guided.155, whole genome shotgun sequence	743..1546	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	100	373 / 373	ABOGDL010000168.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313080 SAMN35679826-rid18346103.denovo.172, whole genome shotgun sequence	1142..1514																																																						avrA	ABOGDL010000037.1	39604..40473	99.655	870	0						
GCA_032965965.1_PDT001773654.1_genomic.fna	Salmonella_enterica	0.5257	46.071 KB	35	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	-:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncA,IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	-	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOGDM010000065.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.denovo.066, whole genome shotgun sequence	11318..11755	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOGDM010000145.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.denovo.150, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOGDM010000207.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.guided.093, whole genome shotgun sequence	14165..14602	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOGDM010000212.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.guided.170, whole genome shotgun sequence	2049..2828	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOGDM010000145.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.denovo.150, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOGDM010000212.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.guided.170, whole genome shotgun sequence	1053..1919	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOGDM010000108.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.denovo.111, whole genome shotgun sequence	8509..9414	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOGDM010000210.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.guided.141, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOGDM010000139.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.denovo.144, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOGDM010000211.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.guided.159, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOGDM010000145.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.denovo.150, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOGDM010000212.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.guided.170, whole genome shotgun sequence	137..793	Ciprofloxacin	AY070235	sul1	100	840/840	ABOGDM010000108.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.denovo.111, whole genome shotgun sequence	2359..3198	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGDM010000214.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.guided.186, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1240/1275	ABOGDM010000176.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.denovo.184, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOGDM010000213.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.guided.181, whole genome shotgun sequence	305..1579	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOGDM010000108.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.denovo.111, whole genome shotgun sequence	841..1314	Trimethoprim	X00926	dfrA1	100	474/474	ABOGDM010000215.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.guided.187, whole genome shotgun sequence	200..673	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncA	100	417 / 417	ABOGDM010000002.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.denovo.002, whole genome shotgun sequence	36355..36771	enterobacteriales	IncR	100	251 / 251	ABOGDM010000179.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS22313077 SAMN35679823-rid18346383.denovo.189, whole genome shotgun sequence	374..624																																																avrA	ABOGDM010000008.1	81615..82484	99.77	870	0						
GCA_032965985.1_PDT001773652.1_genomic.fna	Salmonella_enterica	0.5232	56.491 KB	29	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGDO010000013.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313081 SAMN35679829-rid18346373.denovo.013, whole genome shotgun sequence	75569..76006	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGDO010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313081 SAMN35679829-rid18346373.denovo.099, whole genome shotgun sequence	11981..12772	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGDO010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313081 SAMN35679829-rid18346373.denovo.099, whole genome shotgun sequence	11981..12772	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOGDO010000178.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313081 SAMN35679829-rid18346373.guided.092, whole genome shotgun sequence	14900..15337	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGDO010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313081 SAMN35679829-rid18346373.guided.104, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGDO010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313081 SAMN35679829-rid18346373.guided.104, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOGDO010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313081 SAMN35679829-rid18346373.denovo.099, whole genome shotgun sequence	10637..11476	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGDO010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313081 SAMN35679829-rid18346373.guided.104, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOGDO010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313081 SAMN35679829-rid18346373.denovo.112, whole genome shotgun sequence	1800..2999	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGDO010000181.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313081 SAMN35679829-rid18346373.guided.111, whole genome shotgun sequence	1831..3030	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGDO010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313081 SAMN35679829-rid18346373.denovo.090, whole genome shotgun sequence	14637..15196																																																						avrA	ABOGDO010000005.1	105390..106259	99.655	870	0						
GCA_032966065.1_PDT001773648.1_genomic.fna	Salmonella_enterica	0.5236	51.573 KB	32	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOGDS010000019.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313079 SAMN35679824-rid18346093.denovo.019, whole genome shotgun sequence	48338..48775	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGDS010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313079 SAMN35679824-rid18346093.denovo.101, whole genome shotgun sequence	11972..12763	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGDS010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313079 SAMN35679824-rid18346093.denovo.101, whole genome shotgun sequence	11972..12763	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.26	438/438	ABOGDS010000200.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313079 SAMN35679824-rid18346093.guided.047, whole genome shotgun sequence	33414..33851	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGDS010000203.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313079 SAMN35679824-rid18346093.guided.126, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGDS010000203.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313079 SAMN35679824-rid18346093.guided.126, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABOGDS010000148.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313079 SAMN35679824-rid18346093.denovo.153, whole genome shotgun sequence	1070..1945	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOGDS010000205.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313079 SAMN35679824-rid18346093.guided.173, whole genome shotgun sequence	748..1623	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABOGDS010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313079 SAMN35679824-rid18346093.denovo.101, whole genome shotgun sequence	10628..11467	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGDS010000203.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313079 SAMN35679824-rid18346093.guided.126, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOGDS010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313079 SAMN35679824-rid18346093.denovo.140, whole genome shotgun sequence	1768..2967	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGDS010000204.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313079 SAMN35679824-rid18346093.guided.138, whole genome shotgun sequence	1809..3008	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGDS010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313079 SAMN35679824-rid18346093.denovo.128, whole genome shotgun sequence	5299..5858																																																						avrA	ABOGDS010000017.1	61824..62693	99.655	870	0						
GCA_032966565.1_PDT001773618.1_genomic.fna	Salmonella_enterica	0.5197	88.012 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGES010000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322326 SAMN35677773-rid18343873.denovo.009, whole genome shotgun sequence	86148..86585	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGES010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322326 SAMN35677773-rid18343873.denovo.088, whole genome shotgun sequence	2335..3171	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGES010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322326 SAMN35677773-rid18343873.denovo.088, whole genome shotgun sequence	3171..3974	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOGES010000139.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322326 SAMN35677773-rid18343873.guided.050, whole genome shotgun sequence	15600..16037	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGES010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322326 SAMN35677773-rid18343873.guided.090, whole genome shotgun sequence	2313..3149	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGES010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322326 SAMN35677773-rid18343873.guided.090, whole genome shotgun sequence	1510..2313	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOGES010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322326 SAMN35677773-rid18343873.denovo.051, whole genome shotgun sequence	25776..26921	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOGES010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322326 SAMN35677773-rid18343873.guided.086, whole genome shotgun sequence	4264..5409	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	tet(B)	100	1206/1206	ABOGES010000090.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322326 SAMN35677773-rid18343873.denovo.095, whole genome shotgun sequence	2396..3601	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGES010000144.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322326 SAMN35677773-rid18343873.guided.096, whole genome shotgun sequence	2310..3515	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOGES010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322326 SAMN35677773-rid18343873.denovo.087, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOGES010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322326 SAMN35677773-rid18343873.denovo.088, whole genome shotgun sequence	1451..1712		enterobacteriales	IncFII	96.95	262 / 261	ABOGES010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322326 SAMN35677773-rid18343873.guided.090, whole genome shotgun sequence	3772..4033		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGES010000064.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322326 SAMN35677773-rid18343873.denovo.066, whole genome shotgun sequence	4767..4908		enterobacteriales	IncX1	100	373 / 373	ABOGES010000089.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322326 SAMN35677773-rid18343873.denovo.094, whole genome shotgun sequence	2242..2614																											avrA	ABOGES010000044.1	39484..40353	99.655	870	0						
GCA_032966605.1_PDT001773617.1_genomic.fna	Salmonella_enterica	0.52	97.302 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGET010000015.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322325 SAMN35677772-rid18342393.denovo.015, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGET010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322325 SAMN35677772-rid18342393.denovo.073, whole genome shotgun sequence	6437..7273	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOGET010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322325 SAMN35677772-rid18342393.denovo.073, whole genome shotgun sequence	7273..8076	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOGET010000129.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322325 SAMN35677772-rid18342393.guided.054, whole genome shotgun sequence	12447..12884	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGET010000133.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322325 SAMN35677772-rid18342393.guided.085, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOGET010000133.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322325 SAMN35677772-rid18342393.guided.085, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOGET010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322325 SAMN35677772-rid18342393.denovo.043, whole genome shotgun sequence	40005..41210	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGET010000132.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322325 SAMN35677772-rid18342393.guided.082, whole genome shotgun sequence	4199..5404	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOGET010000090.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322325 SAMN35677772-rid18342393.denovo.095, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOGET010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322325 SAMN35677772-rid18342393.denovo.073, whole genome shotgun sequence	5553..5814		enterobacteriales	IncFII	96.95	262 / 261	ABOGET010000133.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322325 SAMN35677772-rid18342393.guided.085, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOGET010000078.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322325 SAMN35677772-rid18342393.denovo.081, whole genome shotgun sequence	4720..4861		enterobacteriales	IncX1	100	373 / 373	ABOGET010000064.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322325 SAMN35677772-rid18342393.denovo.066, whole genome shotgun sequence	2732..3104																											avrA	ABOGET010000041.1	39484..40353	99.655	870	0						
GCA_032966645.1_PDT001773616.1_genomic.fna	Salmonella_enterica	0.522	116.523 KB	13	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGEU010000009.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322330 SAMN35677777-rid18343863.denovo.09, whole genome shotgun sequence	96798..97235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGEU010000094.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322330 SAMN35677777-rid18343863.guided.53, whole genome shotgun sequence	15506..15943	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGEU010000054.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322330 SAMN35677777-rid18343863.denovo.56, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOGEU010000066.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322330 SAMN35677777-rid18343863.denovo.69, whole genome shotgun sequence	3417..3678																																																avrA	ABOGEU010000003.1	175197..176066	99.54	870	0						
GCA_032966665.1_PDT001773615.1_genomic.fna	Salmonella_enterica	0.5223	61.918 KB	23	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGEV010000019.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322328 SAMN35677775-rid18345123.denovo.019, whole genome shotgun sequence	12480..12917	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGEV010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322328 SAMN35677775-rid18345123.denovo.066, whole genome shotgun sequence	22886..23677	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGEV010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322328 SAMN35677775-rid18345123.denovo.066, whole genome shotgun sequence	22886..23677	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOGEV010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322328 SAMN35677775-rid18345123.guided.087, whole genome shotgun sequence	14158..14595	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGEV010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322328 SAMN35677775-rid18345123.guided.099, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGEV010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322328 SAMN35677775-rid18345123.guided.099, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOGEV010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322328 SAMN35677775-rid18345123.denovo.066, whole genome shotgun sequence	21542..22381	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGEV010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322328 SAMN35677775-rid18345123.guided.099, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOGEV010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322328 SAMN35677775-rid18345123.denovo.066, whole genome shotgun sequence	7826..9025	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGEV010000125.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322328 SAMN35677775-rid18345123.guided.094, whole genome shotgun sequence	1908..3107	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGEV010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322328 SAMN35677775-rid18345123.denovo.082, whole genome shotgun sequence	14638..15197																																																						avrA	ABOGEV010000002.1	124274..125143	99.655	870	0						
GCA_032966685.1_PDT001773614.1_genomic.fna	Salmonella_enterica	0.5196	70.256 KB	23	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGEW010000001.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322327 SAMN35677774-rid18343853.denovo.001, whole genome shotgun sequence	83703..84140	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGEW010000101.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322327 SAMN35677774-rid18343853.denovo.104, whole genome shotgun sequence	251..1087	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGEW010000101.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322327 SAMN35677774-rid18343853.denovo.104, whole genome shotgun sequence	1087..1890	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOGEW010000144.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322327 SAMN35677774-rid18343853.guided.051, whole genome shotgun sequence	15897..16334	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGEW010000148.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322327 SAMN35677774-rid18343853.guided.121, whole genome shotgun sequence	832..1668	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGEW010000148.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322327 SAMN35677774-rid18343853.guided.121, whole genome shotgun sequence	29..832	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOGEW010000107.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322327 SAMN35677774-rid18343853.denovo.111, whole genome shotgun sequence	2325..3530	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGEW010000147.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322327 SAMN35677774-rid18343853.guided.109, whole genome shotgun sequence	2356..3561	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOGEW010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322327 SAMN35677774-rid18343853.denovo.101, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOGEW010000094.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322327 SAMN35677774-rid18343853.denovo.097, whole genome shotgun sequence	540..801		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOGEW010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322327 SAMN35677774-rid18343853.denovo.072, whole genome shotgun sequence	6214..6355		enterobacteriales	IncX1	100	373 / 373	ABOGEW010000095.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322327 SAMN35677774-rid18343853.denovo.098, whole genome shotgun sequence	2153..2525																																		avrA	ABOGEW010000043.1	39594..40463	99.655	870	0						
GCA_032966725.1_PDT001773610.1_genomic.fna	Salmonella_enterica	0.5222	60.951 KB	23	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		1	IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGEZ010000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322324 SAMN35677709-rid18345113.denovo.009, whole genome shotgun sequence	12516..12953	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGEZ010000137.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322324 SAMN35677709-rid18345113.guided.046, whole genome shotgun sequence	24955..25392	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOGEZ010000057.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322324 SAMN35677709-rid18345113.denovo.058, whole genome shotgun sequence	14120..15265	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOGEZ010000140.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322324 SAMN35677709-rid18345113.guided.108, whole genome shotgun sequence	1747..2892	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOGEZ010000092.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322324 SAMN35677709-rid18345113.denovo.095, whole genome shotgun sequence	10343..11158	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOGEZ010000141.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322324 SAMN35677709-rid18345113.guided.112, whole genome shotgun sequence	3140..3955	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOGEZ010000094.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322324 SAMN35677709-rid18345113.denovo.097, whole genome shotgun sequence	647..1846	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGEZ010000142.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322324 SAMN35677709-rid18345113.guided.121, whole genome shotgun sequence	673..1872	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	IncC	100	417 / 417	ABOGEZ010000059.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322324 SAMN35677709-rid18345113.denovo.060, whole genome shotgun sequence	25062..25478																																																						avrA	ABOGEZ010000006.1	106169..107038	99.885	870	0						
GCA_032966745.1_PDT001773611.1_genomic.fna	Salmonella_enterica	0.5234	73.728 KB	21	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGEY010000024.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322309 SAMN35677711-rid18342373.denovo.024, whole genome shotgun sequence	12499..12936	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGEY010000133.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322309 SAMN35677711-rid18342373.guided.062, whole genome shotgun sequence	13269..13706	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOGEY010000106.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322309 SAMN35677711-rid18342373.denovo.109, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABOGEY010000101.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322309 SAMN35677711-rid18342373.denovo.104, whole genome shotgun sequence	3175..3285																																																avrA	ABOGEY010000025.1	61535..62404	99.425	870	0						
GCA_032966765.1_PDT001773607.1_genomic.fna	Salmonella_enterica	0.5225	62.316 KB	25	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aadA1,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aadA1,qnrS2,qnrS2,sul1,sul1,tet(A),tet(A)	0		2	ColRNAI,IncQ2,IncQ2	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGFC010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.denovo.001, whole genome shotgun sequence	38059..38496	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGFC010000062.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.denovo.062, whole genome shotgun sequence	22422..23258	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOGFC010000062.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.denovo.062, whole genome shotgun sequence	23258..24060	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGFC010000062.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.denovo.062, whole genome shotgun sequence	23258..24061	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGFC010000062.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.denovo.062, whole genome shotgun sequence	23258..24061	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGFC010000062.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.denovo.062, whole genome shotgun sequence	23258..24061	Streptomycin	AF321550	aadA1	99.49	792/792	ABOGFC010000062.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.denovo.062, whole genome shotgun sequence	8654..9445	Spectinomycin, Streptomycin	JX185132	aac(6')-Iaa	100	438/438	ABOGFC010000148.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.guided.070, whole genome shotgun sequence	10889..11326	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGFC010000150.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.guided.104, whole genome shotgun sequence	3941..4777	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOGFC010000150.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.guided.104, whole genome shotgun sequence	3139..3941	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGFC010000150.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.guided.104, whole genome shotgun sequence	3138..3941	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGFC010000150.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.guided.104, whole genome shotgun sequence	3138..3941	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGFC010000150.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.guided.104, whole genome shotgun sequence	3138..3941	Streptomycin	AF321550	aadA1	99.49	792/792	ABOGFC010000153.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.guided.122, whole genome shotgun sequence	1199..1990	Spectinomycin, Streptomycin	JX185132	qnrS2	100	657/657	ABOGFC010000100.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.denovo.102, whole genome shotgun sequence	6140..6796	Ciprofloxacin	DQ485530	qnrS2	100	657/657	ABOGFC010000152.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.guided.115, whole genome shotgun sequence	555..1211	Ciprofloxacin	DQ485530	sul1	100	840/840	ABOGFC010000062.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.denovo.062, whole genome shotgun sequence	7310..8149	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGFC010000153.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.guided.122, whole genome shotgun sequence	2495..3334	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOGFC010000062.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.denovo.062, whole genome shotgun sequence	15530..16729	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGFC010000154.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.guided.123, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																enterobacteriales	ColRNAI	90.08	131 / 130	ABOGFC010000114.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.denovo.119, whole genome shotgun sequence	4021..4151	enterobacteriales	IncQ2	98.89	450 / 450	ABOGFC010000100.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.denovo.102, whole genome shotgun sequence	4059..4508		enterobacteriales	IncQ2	98.89	450 / 450	ABOGFC010000152.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322310 SAMN35677706-rid18342353.guided.115, whole genome shotgun sequence	2843..3292																																									avrA	ABOGFC010000008.1	106335..107203	99.77	870	0						
GCA_032966785.1_PDT001773609.1_genomic.fna	Salmonella_enterica	0.5223	98.442 KB	15	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGFA010000006.1 Salmonella enterica subsp. enterica serovar Manhattan strain FSIS12322311 SAMN35677707-rid18342363.denovo.06, whole genome shotgun sequence	76094..76531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGFA010000076.1 Salmonella enterica subsp. enterica serovar Manhattan strain FSIS12322311 SAMN35677707-rid18342363.guided.48, whole genome shotgun sequence	12384..12821	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGFA010000007.1	81528..82397	99.425	870	0						
GCA_032966805.1_PDT001773608.1_genomic.fna	Salmonella_enterica	0.5228	50.006 KB	28	aroC_347,dnaN_394,hemD_78,hisD_496,purE_426,sucA_9,thrA_102	1549	8:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_347	dnaN	100	100	dnaN_394	hemD	100	100	hemD_78	hisD	100	100	hisD_496	purE	100	100	purE_426	sucA	100	100	sucA_9	thrA	100	100	thrA_102	8	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Altona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGFB010000063.1 Salmonella enterica subsp. enterica serovar Altona strain FSIS12322312 SAMN35677708-rid18343833.denovo.063, whole genome shotgun sequence	11743..12180	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGFB010000170.1 Salmonella enterica subsp. enterica serovar Altona strain FSIS12322312 SAMN35677708-rid18343833.guided.066, whole genome shotgun sequence	14172..14609	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGFB010000022.1	22215..23084	99.195	870	0						
GCA_032966825.1_PDT001773606.1_genomic.fna	Salmonella_enterica	0.5207	297.876 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGFD010000001.1 Salmonella enterica strain PNUSAS354758 SAMN35677703-rid18343823.denovo.01, whole genome shotgun sequence	563827..564264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGFD010000036.1 Salmonella enterica strain PNUSAS354758 SAMN35677703-rid18343823.guided.24, whole genome shotgun sequence	12442..12879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGFD010000010.1	140470..141338	99.195	870	0						
GCA_032966845.1_PDT001773605.1_genomic.fna	Salmonella_enterica	0.5218	366.725 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGFE010000001.1 Salmonella enterica strain PNUSAS354759 SAMN35677704-rid18345103.denovo.01, whole genome shotgun sequence	559795..560232	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGFE010000032.1 Salmonella enterica strain PNUSAS354759 SAMN35677704-rid18345103.guided.26, whole genome shotgun sequence	4014..4451	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGFE010000010.1	139902..140770	99.195	870	0						
GCA_032966865.1_PDT001773604.1_genomic.fna	Salmonella_enterica	0.5206	295.054 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGFF010000001.1 Salmonella enterica strain PNUSAS354757 SAMN35677705-rid18343813.denovo.01, whole genome shotgun sequence	563827..564264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGFF010000032.1 Salmonella enterica strain PNUSAS354757 SAMN35677705-rid18343813.guided.24, whole genome shotgun sequence	10910..11347	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGFF010000011.1	140180..141048	99.195	870	0						
GCA_032967145.1_PDT001773588.1_genomic.fna	Salmonella_enterica	0.5212	412.185 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGFU010000001.1 Salmonella enterica strain PNUSAS354722 SAMN35677681-rid18343743.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGFU010000031.1 Salmonella enterica strain PNUSAS354722 SAMN35677681-rid18343743.guided.21, whole genome shotgun sequence	9401..9838	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGFU010000020.1 Salmonella enterica strain PNUSAS354722 SAMN35677681-rid18343743.denovo.22, whole genome shotgun sequence	6833..7475	enterobacteriales	IncFII(S)	100	262 / 262	ABOGFU010000022.1 Salmonella enterica strain PNUSAS354722 SAMN35677681-rid18343743.denovo.25, whole genome shotgun sequence	3384..3645																																																avrA	ABOGFU010000007.1	174754..175623	99.54	870	0						
GCA_032967185.1_PDT001773587.1_genomic.fna	Salmonella_enterica	0.5204	283.877 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGFV010000001.1 Salmonella enterica strain PNUSAS354721 SAMN35677676-rid18342283.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGFV010000030.1 Salmonella enterica strain PNUSAS354721 SAMN35677676-rid18342283.guided.19, whole genome shotgun sequence	17966..18403	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGFV010000019.1 Salmonella enterica strain PNUSAS354721 SAMN35677676-rid18342283.denovo.20, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOGFV010000024.1 Salmonella enterica strain PNUSAS354721 SAMN35677676-rid18342283.denovo.28, whole genome shotgun sequence	3392..3653		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOGFV010000016.1 Salmonella enterica strain PNUSAS354721 SAMN35677676-rid18342283.denovo.16, whole genome shotgun sequence	80190..80331																																									avrA	ABOGFV010000002.1	553077..553946	99.54	870	0						
GCA_032967205.1_PDT001773586.1_genomic.fna	Salmonella_enterica	0.5223	203.759 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGFW010000001.1 Salmonella enterica strain PNUSAS354718 isolate 23-000768-BAC-01 SAMN35677678-rid18343733.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGFW010000039.1 Salmonella enterica strain PNUSAS354718 isolate 23-000768-BAC-01 SAMN35677678-rid18343733.guided.25, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGFW010000003.1	39430..40299	99.655	870	0						
GCA_032967225.1_PDT001773584.1_genomic.fna	Salmonella_enterica	0.5212	411.257 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGFY010000004.1 Salmonella enterica strain PNUSAS354720 isolate 23-000770-BAC-01 SAMN35677675-rid18343723.denovo.04, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGFY010000030.1 Salmonella enterica strain PNUSAS354720 isolate 23-000770-BAC-01 SAMN35677675-rid18343723.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGFY010000020.1 Salmonella enterica strain PNUSAS354720 isolate 23-000770-BAC-01 SAMN35677675-rid18343723.denovo.23, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOGFY010000022.1 Salmonella enterica strain PNUSAS354720 isolate 23-000770-BAC-01 SAMN35677675-rid18343723.denovo.25, whole genome shotgun sequence	3407..3668																																																avrA	ABOGFY010000001.1	585030..585899	99.54	870	0						
GCA_032967245.1_PDT001773582.1_genomic.fna	Salmonella_enterica	0.5222	267.21 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGGA010000001.1 Salmonella enterica strain PNUSAS354719 isolate 23-000769-BAC-01 SAMN35677679-rid18342273.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGGA010000034.1 Salmonella enterica strain PNUSAS354719 isolate 23-000769-BAC-01 SAMN35677679-rid18342273.guided.20, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGGA010000004.1	149829..150698	99.655	870	0						
GCA_032967285.1_PDT001773585.1_genomic.fna	Salmonella_enterica	0.5219	252.805 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGFX010000001.1 Salmonella enterica strain PNUSAS354717 isolate 23-000767-BAC-01 SAMN35677677-rid18345063.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGFX010000035.1 Salmonella enterica strain PNUSAS354717 isolate 23-000767-BAC-01 SAMN35677677-rid18345063.guided.23, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGFX010000004.1	149552..150421	99.655	870	0						
GCA_032967305.1_PDT001773581.1_genomic.fna	Salmonella_enterica	0.5215	203.079 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGGB010000001.1 Salmonella enterica strain PNUSAS354723 SAMN35677680-rid18343703.denovo.01, whole genome shotgun sequence	573934..574371	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGGB010000025.1 Salmonella enterica strain PNUSAS354723 SAMN35677680-rid18343703.denovo.25, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGGB010000025.1 Salmonella enterica strain PNUSAS354723 SAMN35677680-rid18343703.denovo.25, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOGGB010000051.1 Salmonella enterica strain PNUSAS354723 SAMN35677680-rid18343703.guided.33, whole genome shotgun sequence	2912..3349	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGGB010000053.1 Salmonella enterica strain PNUSAS354723 SAMN35677680-rid18343703.guided.39, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGGB010000053.1 Salmonella enterica strain PNUSAS354723 SAMN35677680-rid18343703.guided.39, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABOGGB010000040.1 Salmonella enterica strain PNUSAS354723 SAMN35677680-rid18343703.denovo.46, whole genome shotgun sequence	932..1807	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOGGB010000054.1 Salmonella enterica strain PNUSAS354723 SAMN35677680-rid18343703.guided.45, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABOGGB010000025.1 Salmonella enterica strain PNUSAS354723 SAMN35677680-rid18343703.denovo.25, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGGB010000053.1 Salmonella enterica strain PNUSAS354723 SAMN35677680-rid18343703.guided.39, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOGGB010000025.1 Salmonella enterica strain PNUSAS354723 SAMN35677680-rid18343703.denovo.25, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGGB010000049.1 Salmonella enterica strain PNUSAS354723 SAMN35677680-rid18343703.guided.28, whole genome shotgun sequence	7837..9036	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGGB010000030.1 Salmonella enterica strain PNUSAS354723 SAMN35677680-rid18343703.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABOGGB010000003.1	149551..150420	99.655	870	0						
GCA_032967325.1_PDT001773577.1_genomic.fna	Salmonella_enterica	0.5191	156.014 KB	10	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	3	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,tet(A),tet(A)	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOGGF010000001.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322531 SAMN35677674-rid18342253.denovo.01, whole genome shotgun sequence	186006..186443	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOGGF010000061.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322531 SAMN35677674-rid18342253.guided.37, whole genome shotgun sequence	16421..16858	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOGGF010000009.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322531 SAMN35677674-rid18342253.denovo.09, whole genome shotgun sequence	2742..3164	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOGGF010000062.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322531 SAMN35677674-rid18342253.guided.39, whole genome shotgun sequence	18574..18996	Fosfomycin	LAPJ01000014	tet(A)	100	1200/1200	ABOGGF010000026.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322531 SAMN35677674-rid18342253.denovo.26, whole genome shotgun sequence	4348..5547	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGGF010000060.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322531 SAMN35677674-rid18342253.guided.36, whole genome shotgun sequence	4389..5588	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.84	131 / 130	ABOGGF010000042.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322531 SAMN35677674-rid18342253.denovo.47, whole genome shotgun sequence	3857..3987																																																						avrA	ABOGGF010000003.1	39484..40353	99.655	870	0						
GCA_032967335.1_PDT001773578.1_genomic.fna	Salmonella_enterica	0.5185	249.791 KB	7	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,qnrB19,qnrB19,tet(B),tet(B)	1	parC_p.T57S	5	Col(pHAD28),IncFIB(AP001918),IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGGE010000009.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.denovo.09, whole genome shotgun sequence	85234..85671	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGGE010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.denovo.49, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGGE010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.denovo.49, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOGGE010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.guided.17, whole genome shotgun sequence	16445..16882	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGGE010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.guided.62, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGGE010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.guided.62, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOGGE010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.denovo.52, whole genome shotgun sequence	2176..3321	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOGGE010000083.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.guided.55, whole genome shotgun sequence	2217..3362	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	qnrB19	100	645/645	ABOGGE010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.denovo.66, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOGGE010000086.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.guided.71, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	tet(B)	100	1206/1206	ABOGGE010000034.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.denovo.36, whole genome shotgun sequence	17104..18309	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGGE010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.guided.56, whole genome shotgun sequence	2444..3649	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOGGE010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.denovo.66, whole genome shotgun sequence	1150..1280	enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOGGE010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.denovo.60, whole genome shotgun sequence	1155..1836		enterobacteriales	IncFII	96.95	262 / 261	ABOGGE010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.denovo.49, whole genome shotgun sequence	1831..2092		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGGE010000042.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.denovo.45, whole genome shotgun sequence	3027..3168		enterobacteriales	IncX1	100	373 / 373	ABOGGE010000044.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322529 SAMN35677672-rid18343693.denovo.47, whole genome shotgun sequence	2153..2525																											avrA	ABOGGE010000022.1	39612..40481	99.655	870	0						
GCA_032967365.1_PDT001773579.1_genomic.fna	Salmonella_enterica	0.522	393.562 KB	5	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOGGD010000004.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322530 SAMN35677673-rid18342263.denovo.04, whole genome shotgun sequence	252456..252893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGGD010000026.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322530 SAMN35677673-rid18342263.denovo.30, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOGGD010000026.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322530 SAMN35677673-rid18342263.denovo.30, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGGD010000026.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322530 SAMN35677673-rid18342263.denovo.30, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGGD010000026.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322530 SAMN35677673-rid18342263.denovo.30, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGGD010000026.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322530 SAMN35677673-rid18342263.denovo.30, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOGGD010000038.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322530 SAMN35677673-rid18342263.guided.16, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGGD010000041.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322530 SAMN35677673-rid18342263.guided.29, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOGGD010000041.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322530 SAMN35677673-rid18342263.guided.29, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGGD010000041.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322530 SAMN35677673-rid18342263.guided.29, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGGD010000041.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322530 SAMN35677673-rid18342263.guided.29, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGGD010000041.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322530 SAMN35677673-rid18342263.guided.29, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOGGD010000027.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322530 SAMN35677673-rid18342263.denovo.32, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGGD010000042.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322530 SAMN35677673-rid18342263.guided.31, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGGD010000002.1	573274..574143	99.655	870	0						
GCA_032967465.1_PDT001773576.1_genomic.fna	Salmonella_enterica	0.5221	488.049 KB	4	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGGG010000001.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322532 SAMN35677670-rid18343683.denovo.01, whole genome shotgun sequence	453184..453621	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGGG010000035.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322532 SAMN35677670-rid18343683.guided.22, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOGGG010000026.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322532 SAMN35677670-rid18343683.denovo.29, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABOGGG010000023.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322532 SAMN35677670-rid18343683.denovo.26, whole genome shotgun sequence	3175..3285																																																avrA	ABOGGG010000003.1	178452..179321	99.425	870	0						
GCA_032967485.1_PDT001773572.1_genomic.fna	Salmonella_enterica	0.5208	270.926 KB	5	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOGGK010000001.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322533 SAMN35677671-rid18342243.denovo.01, whole genome shotgun sequence	786169..786606	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOGGK010000029.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322533 SAMN35677671-rid18342243.guided.17, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOGGK010000024.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12322533 SAMN35677671-rid18342243.denovo.27, whole genome shotgun sequence	239..369																																																						avrA	ABOGGK010000009.1	39482..40351	99.425	870	0						
GCA_032967525.1_PDT001773569.1_genomic.fna	Salmonella_enterica	0.5199	167.739 KB	9	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGGN010000013.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322526 SAMN35677661-rid18343643.denovo.13, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGGN010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322526 SAMN35677661-rid18343643.guided.39, whole genome shotgun sequence	7323..7760	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	ABOGGN010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322526 SAMN35677661-rid18343643.denovo.50, whole genome shotgun sequence	1831..2512	enterobacteriales	IncFII	96.56	262 / 261	ABOGGN010000032.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322526 SAMN35677661-rid18343643.denovo.33, whole genome shotgun sequence	36788..37049		enterobacteriales	IncX1	100	373 / 373	ABOGGN010000040.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322526 SAMN35677661-rid18343643.denovo.42, whole genome shotgun sequence	2153..2525																																									avrA	ABOGGN010000029.1	39484..40353	99.655	870	0						
GCA_032967545.1_PDT001773570.1_genomic.fna	Salmonella_enterica	0.5197	162.487 KB	10	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aac(3)-VIa,aph(6)-Id,aph(3'')-Ib,aadA1,aadA1,sul1,sul1,tet(B),tet(B)	1	parC_p.T57S	5	Col(pHAD28),IncFIB(AP001918),IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGGM010000014.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.denovo.14, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOGGM010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.denovo.43, whole genome shotgun sequence	12823..13725	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	99.75	792/792	ABOGGM010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.denovo.43, whole genome shotgun sequence	13889..14680	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGGM010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.denovo.43, whole genome shotgun sequence	13889..14680	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOGGM010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.denovo.53, whole genome shotgun sequence	3632..4468	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOGGM010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.denovo.53, whole genome shotgun sequence	4468..5271	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOGGM010000079.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.guided.32, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOGGM010000083.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.guided.58, whole genome shotgun sequence	37..939	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aph(6)-Id	100	837/837	ABOGGM010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.guided.62, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOGGM010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.guided.62, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aadA1	99.75	792/792	ABOGGM010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.guided.66, whole genome shotgun sequence	3131..3922	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGGM010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.guided.66, whole genome shotgun sequence	3131..3922	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOGGM010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.denovo.43, whole genome shotgun sequence	5984..6823	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGGM010000081.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.guided.54, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABOGGM010000052.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.denovo.56, whole genome shotgun sequence	1430..2635	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGGM010000082.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.guided.57, whole genome shotgun sequence	4117..5322	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.15	113 / 131	ABOGGM010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.denovo.65, whole genome shotgun sequence	1410..1522	enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOGGM010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.denovo.50, whole genome shotgun sequence	1834..2515		enterobacteriales	IncFII	96.95	262 / 261	ABOGGM010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.denovo.53, whole genome shotgun sequence	2748..3009		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGGM010000042.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.denovo.44, whole genome shotgun sequence	3027..3168		enterobacteriales	IncX1	100	373 / 373	ABOGGM010000049.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322525 SAMN35677660-rid18345033.denovo.52, whole genome shotgun sequence	2153..2525																											avrA	ABOGGM010000016.1	102495..103364	99.655	870	0						
GCA_032967555.1_PDT001773568.1_genomic.fna	Salmonella_enterica	0.5187	145.874 KB	10	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGGO010000013.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322527 SAMN35677662-rid18343633.denovo.13, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGGO010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322527 SAMN35677662-rid18343633.denovo.50, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOGGO010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322527 SAMN35677662-rid18343633.denovo.50, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOGGO010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322527 SAMN35677662-rid18343633.guided.27, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGGO010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322527 SAMN35677662-rid18343633.guided.66, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOGGO010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322527 SAMN35677662-rid18343633.guided.66, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOGGO010000059.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322527 SAMN35677662-rid18343633.denovo.63, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGGO010000083.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322527 SAMN35677662-rid18343633.guided.62, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOGGO010000039.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322527 SAMN35677662-rid18343633.denovo.41, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABOGGO010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322527 SAMN35677662-rid18343633.denovo.50, whole genome shotgun sequence	5800..6061		enterobacteriales	IncFII	96.95	262 / 261	ABOGGO010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322527 SAMN35677662-rid18343633.guided.66, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOGGO010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322527 SAMN35677662-rid18343633.denovo.46, whole genome shotgun sequence	5664..5805		enterobacteriales	IncX1	100	373 / 373	ABOGGO010000058.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322527 SAMN35677662-rid18343633.denovo.61, whole genome shotgun sequence	2153..2525																											avrA	ABOGGO010000029.1	39484..40353	99.655	870	0						
GCA_032967585.1_PDT001773566.1_genomic.fna	Salmonella_enterica	0.521	333.186 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGGQ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322524 SAMN35677659-rid18343623.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGGQ010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322524 SAMN35677659-rid18343623.guided.31, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGGQ010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322524 SAMN35677659-rid18343623.denovo.29, whole genome shotgun sequence	9110..9669																																																						avrA	ABOGGQ010000002.1	149828..150697	99.655	870	0						
GCA_032967605.1_PDT001773567.1_genomic.fna	Salmonella_enterica	0.5221	76.265 KB	21	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGGP010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322528 SAMN35677663-rid18342233.denovo.026, whole genome shotgun sequence	12494..12931	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGGP010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322528 SAMN35677663-rid18342233.guided.066, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGGP010000089.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322528 SAMN35677663-rid18342233.denovo.092, whole genome shotgun sequence	5351..5910																																																						avrA	ABOGGP010000005.1	105196..106065	99.655	870	0						
GCA_032967745.1_PDT001773559.1_genomic.fna	Salmonella_enterica	0.5212	264.74 KB	7	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGGX010000004.1 Salmonella enterica subsp. enterica serovar Oranienburg strain FSIS12322136 SAMN35677648-rid18342213.denovo.04, whole genome shotgun sequence	149545..149982	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGGX010000027.1 Salmonella enterica subsp. enterica serovar Oranienburg strain FSIS12322136 SAMN35677648-rid18342213.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032967765.1_PDT001773558.1_genomic.fna	Salmonella_enterica	0.5159	511.147 KB	5	aroC_40,dnaN_36,hemD_3,hisD_37,purE_29,sucA_9,thrA_36	72	4:f,g:-	3	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,tet(B),tet(B)	1	parC_p.T57S	5	ColRNAI,IncFIA(HI1),IncHI1A,IncHI1B(R27),IncI1-I(Alpha)	aroC	100	100	aroC_40	dnaN	100	100	dnaN_36	hemD	100	100	hemD_3	hisD	100	100	hisD_37	purE	100	100	purE_29	sucA	100	100	sucA_9	thrA	100	100	thrA_36	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGGY010000001.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322141 SAMN35677650-rid18345003.denovo.01, whole genome shotgun sequence	99717..100154	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGGY010000033.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322141 SAMN35677650-rid18345003.guided.20, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOGGY010000020.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322141 SAMN35677650-rid18345003.denovo.23, whole genome shotgun sequence	28372..29517	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOGGY010000034.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322141 SAMN35677650-rid18345003.guided.25, whole genome shotgun sequence	157..1302	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	tet(B)	100	1206/1206	ABOGGY010000015.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322141 SAMN35677650-rid18345003.denovo.15, whole genome shotgun sequence	61414..62619	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGGY010000031.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322141 SAMN35677650-rid18345003.guided.16, whole genome shotgun sequence	58620..59825	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.83	109 / 130	ABOGGY010000023.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322141 SAMN35677650-rid18345003.denovo.28, whole genome shotgun sequence	1016..1124	enterobacteriales	IncFIA(HI1)	100	388 / 388	ABOGGY010000015.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322141 SAMN35677650-rid18345003.denovo.15, whole genome shotgun sequence	883..1270		enterobacteriales	IncHI1A	99.76	420 / 420	ABOGGY010000010.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322141 SAMN35677650-rid18345003.denovo.10, whole genome shotgun sequence	114240..114659		enterobacteriales	IncHI1B(R27)	100	540 / 540	ABOGGY010000010.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322141 SAMN35677650-rid18345003.denovo.10, whole genome shotgun sequence	100624..101163	R27	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGGY010000010.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS12322141 SAMN35677650-rid18345003.denovo.10, whole genome shotgun sequence	60210..60351																											avrA	ABOGGY010000004.1	144637..145506	99.425	870	0						
GCA_032967845.1_PDT001772855.1_genomic.fna	Salmonella_enterica	0.522	411.419 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGHE010000001.1 Salmonella enterica strain PNUSAS354459 SAMN35677113-rid18341673.denovo.01, whole genome shotgun sequence	835213..835650	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGHE010000024.1 Salmonella enterica strain PNUSAS354459 SAMN35677113-rid18341673.guided.17, whole genome shotgun sequence	7065..7502	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGHE010000005.1	183097..183966	99.77	870	0						
GCA_032967945.1_PDT001772851.1_genomic.fna	Salmonella_enterica	0.5221	233.699 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGHI010000002.1 Salmonella enterica strain PNUSAS354449 SAMN35677107-rid18341633.denovo.02, whole genome shotgun sequence	257392..257829	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGHI010000042.1 Salmonella enterica strain PNUSAS354449 SAMN35677107-rid18341633.guided.33, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032967965.1_PDT001772850.1_genomic.fna	Salmonella_enterica	0.5222	496.481 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGHJ010000001.1 Salmonella enterica strain PNUSAS354436 SAMN35677110-rid18341623.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGHJ010000025.1 Salmonella enterica strain PNUSAS354436 SAMN35677110-rid18341623.guided.13, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGHJ010000002.1	129887..130756	98.966	870	0						
GCA_032968005.1_PDT001772849.1_genomic.fna	Salmonella_enterica	0.5207	227.326 KB	9	aroC_111,dnaN_104,hemD_17,hisD_49,purE_33,sucA_314,thrA_4	929	16:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_111	dnaN	100	100	dnaN_104	hemD	100	100	hemD_17	hisD	100	100	hisD_49	purE	100	100	purE_33	sucA	100	100	sucA_314	thrA	100	100	thrA_4	16	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Brazil		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOGHK010000016.1 Salmonella enterica strain PNUSAS354445 SAMN35677058-rid18342113.denovo.16, whole genome shotgun sequence	82261..82698	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOGHK010000064.1 Salmonella enterica strain PNUSAS354445 SAMN35677058-rid18342113.guided.25, whole genome shotgun sequence	16425..16862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOGHK010000035.1 Salmonella enterica strain PNUSAS354445 SAMN35677058-rid18342113.denovo.37, whole genome shotgun sequence	11451..12093																																																						avrA	ABOGHK010000001.1	354007..354876	99.655	870	0						
GCA_032968025.1_PDT001772848.1_genomic.fna	Salmonella_enterica	0.5212	490.981 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGHL010000001.1 Salmonella enterica strain PNUSAS354438 SAMN35677115-rid18341613.denovo.01, whole genome shotgun sequence	162555..162992	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGHL010000027.1 Salmonella enterica strain PNUSAS354438 SAMN35677115-rid18341613.guided.20, whole genome shotgun sequence	3079..3516	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGHL010000013.1 Salmonella enterica strain PNUSAS354438 SAMN35677115-rid18341613.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOGHL010000017.1 Salmonella enterica strain PNUSAS354438 SAMN35677115-rid18341613.denovo.19, whole genome shotgun sequence	3400..3661																																																avrA	ABOGHL010000002.1	538517..539386	99.54	870	0						
GCA_032968045.1_PDT001772844.1_genomic.fna	Salmonella_enterica	0.5217	529.829 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOGHP010000001.1 Salmonella enterica strain PNUSAS354452 SAMN35677064-rid18341573.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOGHP010000022.1 Salmonella enterica strain PNUSAS354452 SAMN35677064-rid18341573.guided.17, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOGHP010000015.1 Salmonella enterica strain PNUSAS354452 SAMN35677064-rid18341573.denovo.18, whole genome shotgun sequence	239..369																																																						avrA	ABOGHP010000002.1	561368..562237	99.425	870	0						
GCA_032968085.1_PDT001772846.1_genomic.fna	Salmonella_enterica	0.5215	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGHN010000001.1 Salmonella enterica strain PNUSAS354462 SAMN35677070-rid18341593.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGHN010000025.1 Salmonella enterica strain PNUSAS354462 SAMN35677070-rid18341593.guided.20, whole genome shotgun sequence	2412..2849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGHN010000012.1 Salmonella enterica strain PNUSAS354462 SAMN35677070-rid18341593.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOGHN010000015.1 Salmonella enterica strain PNUSAS354462 SAMN35677070-rid18341593.denovo.17, whole genome shotgun sequence	3389..3650																																																avrA	ABOGHN010000002.1	553636..554505	99.54	870	0						
GCA_032968105.1_PDT001772847.1_genomic.fna	Salmonella_enterica	0.5224	437.192 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	4	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(3)-VIa,aadA1,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),Col8282,IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGHM010000001.1 Salmonella enterica strain PNUSAS354455 SAMN35677106-rid18341603.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOGHM010000012.1 Salmonella enterica strain PNUSAS354455 SAMN35677106-rid18341603.denovo.12, whole genome shotgun sequence	69592..70494	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABOGHM010000012.1 Salmonella enterica strain PNUSAS354455 SAMN35677106-rid18341603.denovo.12, whole genome shotgun sequence	68637..69428	Spectinomycin, Streptomycin	JQ414041	aac(3)-VIa	100	903/903	ABOGHM010000032.1 Salmonella enterica strain PNUSAS354455 SAMN35677106-rid18341603.guided.19, whole genome shotgun sequence	3746..4648	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABOGHM010000032.1 Salmonella enterica strain PNUSAS354455 SAMN35677106-rid18341603.guided.19, whole genome shotgun sequence	2791..3582	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABOGHM010000034.1 Salmonella enterica strain PNUSAS354455 SAMN35677106-rid18341603.guided.24, whole genome shotgun sequence	1733..2170	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABOGHM010000012.1 Salmonella enterica strain PNUSAS354455 SAMN35677106-rid18341603.denovo.12, whole genome shotgun sequence	76977..78176	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGHM010000033.1 Salmonella enterica strain PNUSAS354455 SAMN35677106-rid18341603.guided.22, whole genome shotgun sequence	2040..3239	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOGHM010000021.1 Salmonella enterica strain PNUSAS354455 SAMN35677106-rid18341603.denovo.26, whole genome shotgun sequence	547..675	enterobacteriales	Col8282	100	207 / 207	ABOGHM010000018.1 Salmonella enterica strain PNUSAS354455 SAMN35677106-rid18341603.denovo.21, whole genome shotgun sequence	1108..1314		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGHM010000012.1 Salmonella enterica strain PNUSAS354455 SAMN35677106-rid18341603.denovo.12, whole genome shotgun sequence	83539..83680																																									avrA	ABOGHM010000008.1	39350..40219	98.966	870	0						
GCA_032968125.1_PDT001772838.1_genomic.fna	Salmonella_enterica	0.5219	341.897 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5!,purE_5!,sucA_9,thrA_2	Unknown	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5!	purE	100	100	purE_5!	sucA	100	100	sucA_9	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGHU010000004.1 Salmonella enterica strain PNUSAS354447 SAMN35677111-rid18341523.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGHU010000037.1 Salmonella enterica strain PNUSAS354447 SAMN35677111-rid18341523.guided.16, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOGHU010000015.1 Salmonella enterica strain PNUSAS354447 SAMN35677111-rid18341523.denovo.17, whole genome shotgun sequence	48401..49043	enterobacteriales	IncFII(S)	100	262 / 262	ABOGHU010000015.1 Salmonella enterica strain PNUSAS354447 SAMN35677111-rid18341523.denovo.17, whole genome shotgun sequence	64128..64389																																																avrA	ABOGHU010000001.1	446744..447612	100	869	0						
GCA_032968145.1_PDT001772843.1_genomic.fna	Salmonella_enterica	0.5222	717.781 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pXuzhou21	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGHQ010000001.1 Salmonella enterica strain PNUSAS354461 SAMN35677112-rid18341563.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGHQ010000028.1 Salmonella enterica strain PNUSAS354461 SAMN35677112-rid18341563.guided.22, whole genome shotgun sequence	652..1089	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pXuzhou21	99.86	720 / 720	ABOGHQ010000013.1 Salmonella enterica strain PNUSAS354461 SAMN35677112-rid18341563.denovo.13, whole genome shotgun sequence	23692..24411																																																																	
GCA_032968165.1_PDT001772839.1_genomic.fna	Salmonella_enterica	0.5202	356.375 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOGHT010000001.1 Salmonella enterica strain PNUSAS354446 SAMN35677109-rid18342103.denovo.01, whole genome shotgun sequence	788481..788918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOGHT010000048.1 Salmonella enterica strain PNUSAS354446 SAMN35677109-rid18342103.guided.13, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGHT010000002.1	94228..95097	98.966	870	0						
GCA_032968175.1_PDT001772841.1_genomic.fna	Salmonella_enterica	0.5213	410.978 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGHR010000001.1 Salmonella enterica strain PNUSAS354441 SAMN35677116-rid18341543.denovo.01, whole genome shotgun sequence	835213..835650	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGHR010000021.1 Salmonella enterica strain PNUSAS354441 SAMN35677116-rid18341543.guided.12, whole genome shotgun sequence	28026..28463	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGHR010000006.1	183097..183966	99.77	870	0						
GCA_032968205.1_PDT001772840.1_genomic.fna	Salmonella_enterica	0.5214	529.542 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOGHS010000001.1 Salmonella enterica strain PNUSAS354456 SAMN35677067-rid18341533.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOGHS010000020.1 Salmonella enterica strain PNUSAS354456 SAMN35677067-rid18341533.guided.11, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOGHS010000015.1 Salmonella enterica strain PNUSAS354456 SAMN35677067-rid18341533.denovo.18, whole genome shotgun sequence	239..369																																																						avrA	ABOGHS010000002.1	561368..562237	99.425	870	0						
GCA_032968245.1_PDT001772836.1_genomic.fna	Salmonella_enterica	0.5193	399.493 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGHW010000002.1 Salmonella enterica strain PNUSAS354450 SAMN35677059-rid18341513.denovo.02, whole genome shotgun sequence	539426..539863	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGHW010000082.1 Salmonella enterica strain PNUSAS354450 SAMN35677059-rid18341513.guided.12, whole genome shotgun sequence	42561..42998	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOGHW010000027.1 Salmonella enterica strain PNUSAS354450 SAMN35677059-rid18341513.denovo.29, whole genome shotgun sequence	11447..12089	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABOGHW010000025.1 Salmonella enterica strain PNUSAS354450 SAMN35677059-rid18341513.denovo.27, whole genome shotgun sequence	18865..19447																																																avrA	ABOGHW010000001.1	692152..693021	99.31	870	0						
GCA_032968265.1_PDT001951289.1_genomic.fna	Salmonella_enterica	0.5214	405.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGHX010000001.1 Salmonella enterica strain PNUSAS394194 SAMN37925634-rid19932183.denovo.01, whole genome shotgun sequence	771821..772258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGHX010000024.1 Salmonella enterica strain PNUSAS394194 SAMN37925634-rid19932183.guided.14, whole genome shotgun sequence	39636..40073	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGHX010000017.1 Salmonella enterica strain PNUSAS394194 SAMN37925634-rid19932183.denovo.20, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOGHX010000018.1 Salmonella enterica strain PNUSAS394194 SAMN37925634-rid19932183.denovo.21, whole genome shotgun sequence	3403..3664																																																avrA	ABOGHX010000002.1	553636..554505	99.54	870	0						
GCA_032968285.1_PDT001772835.1_genomic.fna	Salmonella_enterica	0.5209	490.128 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGHZ010000001.1 Salmonella enterica strain PNUSAS354464 SAMN35677108-rid18341503.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGHZ010000027.1 Salmonella enterica strain PNUSAS354464 SAMN35677108-rid18341503.guided.15, whole genome shotgun sequence	1718..2155	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGHZ010000013.1 Salmonella enterica strain PNUSAS354464 SAMN35677108-rid18341503.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOGHZ010000016.1 Salmonella enterica strain PNUSAS354464 SAMN35677108-rid18341503.denovo.19, whole genome shotgun sequence	3404..3665																																																avrA	ABOGHZ010000002.1	585459..586328	99.54	870	0						
GCA_032968305.1_PDT001951267.1_genomic.fna	Salmonella_enterica	0.5208	472.122 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pXuzhou21	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOGHY010000009.1 Salmonella enterica strain PNUSAS394153 SAMN37925451-rid19931963.denovo.09, whole genome shotgun sequence	70822..71259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOGHY010000030.1 Salmonella enterica strain PNUSAS394153 SAMN37925451-rid19931963.guided.23, whole genome shotgun sequence	10481..10918	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pXuzhou21	91.78	718 / 720	ABOGHY010000017.1 Salmonella enterica strain PNUSAS394153 SAMN37925451-rid19931963.denovo.18, whole genome shotgun sequence	28750..29467																																																						avrA	ABOGHY010000003.1	94228..95097	98.966	870	0						
GCA_032968325.1_PDT001772833.1_genomic.fna	Salmonella_enterica	0.5224	263.453 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGIA010000001.1 Salmonella enterica strain PNUSAS354458 SAMN35677114-rid18341483.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGIA010000037.1 Salmonella enterica strain PNUSAS354458 SAMN35677114-rid18341483.guided.26, whole genome shotgun sequence	9754..10191	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGIA010000005.1	149828..150697	99.655	870	0						
GCA_032968345.1_PDT001772820.1_genomic.fna	Salmonella_enterica	0.5217	329.526 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGID010000001.1 Salmonella enterica strain PNUSAS354444 SAMN35677073-rid18341353.denovo.01, whole genome shotgun sequence	829990..830427	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGID010000034.1 Salmonella enterica strain PNUSAS354444 SAMN35677073-rid18341353.guided.29, whole genome shotgun sequence	1172..1609	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGID010000003.1	153273..154142	99.195	870	0						
GCA_032968365.1_PDT001772831.1_genomic.fna	Salmonella_enterica	0.5207	491.021 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGIC010000001.1 Salmonella enterica strain PNUSAS354451 SAMN35677053-rid18341463.denovo.01, whole genome shotgun sequence	162559..162996	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGIC010000026.1 Salmonella enterica strain PNUSAS354451 SAMN35677053-rid18341463.guided.12, whole genome shotgun sequence	34279..34716	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGIC010000013.1 Salmonella enterica strain PNUSAS354451 SAMN35677053-rid18341463.denovo.14, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABOGIC010000013.1 Salmonella enterica strain PNUSAS354451 SAMN35677053-rid18341463.denovo.14, whole genome shotgun sequence	53092..53353																																																avrA	ABOGIC010000002.1	538517..539386	99.54	870	0						
GCA_032968385.1_PDT001772819.1_genomic.fna	Salmonella_enterica	0.5218	380.104 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGIF010000001.1 Salmonella enterica strain PNUSAS354440 SAMN35677056-rid18341343.denovo.01, whole genome shotgun sequence	835213..835650	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGIF010000023.1 Salmonella enterica strain PNUSAS354440 SAMN35677056-rid18341343.guided.17, whole genome shotgun sequence	19407..19844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGIF010000005.1	183097..183966	99.77	870	0						
GCA_032968405.1_PDT001772818.1_genomic.fna	Salmonella_enterica	0.5201	489.865 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGIE010000001.1 Salmonella enterica strain PNUSAS354454 SAMN35677061-rid18341333.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGIE010000025.1 Salmonella enterica strain PNUSAS354454 SAMN35677061-rid18341333.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGIE010000012.1 Salmonella enterica strain PNUSAS354454 SAMN35677061-rid18341333.denovo.14, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABOGIE010000012.1 Salmonella enterica strain PNUSAS354454 SAMN35677061-rid18341333.denovo.14, whole genome shotgun sequence	53092..53353		enterobacteriales	IncX1	98.93	374 / 374	ABOGIE010000013.1 Salmonella enterica strain PNUSAS354454 SAMN35677061-rid18341333.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABOGIE010000002.1	553690..554559	99.54	870	0						
GCA_032968445.1_PDT001772816.1_genomic.fna	Salmonella_enterica	0.5212	366.642 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39*,thrA_42	118*	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	99.8003992015968	100	sucA_39*	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGIG010000001.1 Salmonella enterica strain PNUSAS354439 SAMN35677062-rid18341313.denovo.01, whole genome shotgun sequence	470835..471272	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGIG010000054.1 Salmonella enterica strain PNUSAS354439 SAMN35677062-rid18341313.guided.14, whole genome shotgun sequence	21987..22424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOGIG010000021.1 Salmonella enterica strain PNUSAS354439 SAMN35677062-rid18341313.denovo.23, whole genome shotgun sequence	5862..6504	enterobacteriales	IncFII(Yp)	92.64	231 / 230	ABOGIG010000017.1 Salmonella enterica strain PNUSAS354439 SAMN35677062-rid18341313.denovo.18, whole genome shotgun sequence	3071..3299																																																avrA	ABOGIG010000012.1	150695..151565	99.196	871	0						
GCA_032968465.1_PDT001772812.1_genomic.fna	Salmonella_enterica	0.5202	356.375 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOGII010000001.1 Salmonella enterica strain PNUSAS354465 SAMN35677054-rid18341273.denovo.01, whole genome shotgun sequence	788481..788918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOGII010000041.1 Salmonella enterica strain PNUSAS354465 SAMN35677054-rid18341273.guided.14, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGII010000002.1	131917..132786	98.966	870	0						
GCA_032968485.1_PDT001772813.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGIH010000001.1 Salmonella enterica strain PNUSAS354448 SAMN35677055-rid18341283.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGIH010000023.1 Salmonella enterica strain PNUSAS354448 SAMN35677055-rid18341283.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGIH010000012.1 Salmonella enterica strain PNUSAS354448 SAMN35677055-rid18341283.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOGIH010000016.1 Salmonella enterica strain PNUSAS354448 SAMN35677055-rid18341283.denovo.19, whole genome shotgun sequence	3373..3634																																																avrA	ABOGIH010000002.1	553636..554505	99.54	870	0						
GCA_032968505.1_PDT001772807.1_genomic.fna	Salmonella_enterica	0.5206	583.148 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGIK010000003.1 Salmonella enterica strain PNUSAS354463 SAMN35677072-rid18341223.denovo.03, whole genome shotgun sequence	512664..513101	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGIK010000058.1 Salmonella enterica strain PNUSAS354463 SAMN35677072-rid18341223.guided.26, whole genome shotgun sequence	2627..3064	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOGIK010000023.1 Salmonella enterica strain PNUSAS354463 SAMN35677072-rid18341223.denovo.23, whole genome shotgun sequence	11446..12088	enterobacteriales	IncFII	99.24	262 / 261	ABOGIK010000016.1 Salmonella enterica strain PNUSAS354463 SAMN35677072-rid18341223.denovo.16, whole genome shotgun sequence	61180..61441																																																avrA	ABOGIK010000001.1	559129..559998	99.425	870	0						
GCA_032968525.1_PDT001772811.1_genomic.fna	Salmonella_enterica	0.5223	390.651 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOGIJ010000001.1 Salmonella enterica strain PNUSAS354457 SAMN35677069-rid18341263.denovo.01, whole genome shotgun sequence	1374582..1375019	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGIJ010000019.1 Salmonella enterica strain PNUSAS354457 SAMN35677069-rid18341263.denovo.23, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOGIJ010000019.1 Salmonella enterica strain PNUSAS354457 SAMN35677069-rid18341263.denovo.23, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGIJ010000019.1 Salmonella enterica strain PNUSAS354457 SAMN35677069-rid18341263.denovo.23, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGIJ010000019.1 Salmonella enterica strain PNUSAS354457 SAMN35677069-rid18341263.denovo.23, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGIJ010000019.1 Salmonella enterica strain PNUSAS354457 SAMN35677069-rid18341263.denovo.23, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOGIJ010000031.1 Salmonella enterica strain PNUSAS354457 SAMN35677069-rid18341263.guided.13, whole genome shotgun sequence	12490..12927	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGIJ010000034.1 Salmonella enterica strain PNUSAS354457 SAMN35677069-rid18341263.guided.22, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOGIJ010000034.1 Salmonella enterica strain PNUSAS354457 SAMN35677069-rid18341263.guided.22, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGIJ010000034.1 Salmonella enterica strain PNUSAS354457 SAMN35677069-rid18341263.guided.22, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGIJ010000034.1 Salmonella enterica strain PNUSAS354457 SAMN35677069-rid18341263.guided.22, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGIJ010000034.1 Salmonella enterica strain PNUSAS354457 SAMN35677069-rid18341263.guided.22, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOGIJ010000020.1 Salmonella enterica strain PNUSAS354457 SAMN35677069-rid18341263.denovo.25, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGIJ010000035.1 Salmonella enterica strain PNUSAS354457 SAMN35677069-rid18341263.guided.24, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABOGIJ010000024.1 Salmonella enterica strain PNUSAS354457 SAMN35677069-rid18341263.denovo.29, whole genome shotgun sequence	805..997																																																						avrA	ABOGIJ010000007.1	94979..95848	99.655	870	0						
GCA_032968545.1_PDT001772802.1_genomic.fna	Salmonella_enterica	0.5209	489.886 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGIM010000001.1 Salmonella enterica strain PNUSAS354453 SAMN35677060-rid18341173.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGIM010000025.1 Salmonella enterica strain PNUSAS354453 SAMN35677060-rid18341173.guided.13, whole genome shotgun sequence	11128..11565	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGIM010000012.1 Salmonella enterica strain PNUSAS354453 SAMN35677060-rid18341173.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOGIM010000015.1 Salmonella enterica strain PNUSAS354453 SAMN35677060-rid18341173.denovo.18, whole genome shotgun sequence	3322..3583																																																avrA	ABOGIM010000002.1	553505..554374	99.54	870	0						
GCA_032968565.1_PDT001772803.1_genomic.fna	Salmonella_enterica	0.5205	378.096 KB	6	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGIN010000009.1 Salmonella enterica strain PNUSAS354460 SAMN35677068-rid18341183.denovo.009, whole genome shotgun sequence	88385..88822	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGIN010000119.1 Salmonella enterica strain PNUSAS354460 SAMN35677068-rid18341183.guided.040, whole genome shotgun sequence	5314..5751	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOGIN010000029.1 Salmonella enterica strain PNUSAS354460 SAMN35677068-rid18341183.denovo.029, whole genome shotgun sequence	11451..12093	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABOGIN010000026.1 Salmonella enterica strain PNUSAS354460 SAMN35677068-rid18341183.denovo.026, whole genome shotgun sequence	18874..19456																																																avrA	ABOGIN010000005.1	100472..101341	99.31	870	0						
GCA_032968585.1_PDT001772806.1_genomic.fna	Salmonella_enterica	0.5218	341.181 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGIL010000002.1 Salmonella enterica strain PNUSAS354443 SAMN35677063-rid18341213.denovo.02, whole genome shotgun sequence	145246..145683	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGIL010000049.1 Salmonella enterica strain PNUSAS354443 SAMN35677063-rid18341213.guided.27, whole genome shotgun sequence	10060..10497	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOGIL010000017.1 Salmonella enterica strain PNUSAS354443 SAMN35677063-rid18341213.denovo.17, whole genome shotgun sequence	36049..36691	enterobacteriales	IncFII(S)	100	262 / 262	ABOGIL010000017.1 Salmonella enterica strain PNUSAS354443 SAMN35677063-rid18341213.denovo.17, whole genome shotgun sequence	51776..52037																																																avrA	ABOGIL010000001.1	450784..451653	99.885	870	0						
GCA_032968605.1_PDT001772801.1_genomic.fna	Salmonella_enterica	0.5216	453.649 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGIO010000001.1 Salmonella enterica strain PNUSAS354442 SAMN35677057-rid18341163.denovo.01, whole genome shotgun sequence	828643..829080	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGIO010000026.1 Salmonella enterica strain PNUSAS354442 SAMN35677057-rid18341163.guided.19, whole genome shotgun sequence	5093..5530	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGIO010000010.1	135553..136421	99.195	870	0						
GCA_032968625.1_PDT001772799.1_genomic.fna	Salmonella_enterica	0.5225	498.165 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGIP010000001.1 Salmonella enterica strain PNUSAS354437 SAMN35677071-rid18341143.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGIP010000019.1 Salmonella enterica strain PNUSAS354437 SAMN35677071-rid18341143.guided.11, whole genome shotgun sequence	31596..32033	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGIP010000002.1	183147..184016	98.966	870	0						
GCA_032968745.1_PDT001772791.1_genomic.fna	Salmonella_enterica	0.5204	439.671 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGIV010000001.1 Salmonella enterica strain PNUSAS354570 SAMN35676952-rid18341063.denovo.01, whole genome shotgun sequence	684153..684590	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGIV010000020.1 Salmonella enterica strain PNUSAS354570 SAMN35676952-rid18341063.guided.13, whole genome shotgun sequence	41825..42262	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOGIV010000013.1 Salmonella enterica strain PNUSAS354570 SAMN35676952-rid18341063.denovo.14, whole genome shotgun sequence	34958..35491																																																						avrA	ABOGIV010000002.1	563804..564673	99.77	870	0						
GCA_032968765.1_PDT001772789.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGIX010000001.1 Salmonella enterica strain PNUSAS354575 SAMN35676955-rid18341043.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGIX010000022.1 Salmonella enterica strain PNUSAS354575 SAMN35676955-rid18341043.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGIX010000016.1 Salmonella enterica strain PNUSAS354575 SAMN35676955-rid18341043.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOGIX010000017.1 Salmonella enterica strain PNUSAS354575 SAMN35676955-rid18341043.denovo.20, whole genome shotgun sequence	3439..3700																																																avrA	ABOGIX010000002.1	553635..554504	99.54	870	0						
GCA_032968785.1_PDT001772788.1_genomic.fna	Salmonella_enterica	0.521	515.582 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGIY010000001.1 Salmonella enterica strain PNUSAS354578 SAMN35676947-rid18341033.denovo.01, whole genome shotgun sequence	477417..477854	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGIY010000019.1 Salmonella enterica strain PNUSAS354578 SAMN35676947-rid18341033.guided.13, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGIY010000002.1	551495..552364	99.195	870	0						
GCA_032968805.1_PDT001772792.1_genomic.fna	Salmonella_enterica	0.5219	523.163 KB	4	aroC_5,dnaN_14,hemD_6,hisD_12,purE_5,sucA_14,thrA_58	166	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_5	sucA	100	100	sucA_14	thrA	100	100	thrA_58	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOGIU010000001.1 Salmonella enterica strain PNUSAS354577 SAMN35676949-rid18341073.denovo.01, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOGIU010000025.1 Salmonella enterica strain PNUSAS354577 SAMN35676949-rid18341073.guided.16, whole genome shotgun sequence	34225..34662	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGIU010000002.1	554821..555690	99.655	870	0						
GCA_032968825.1_PDT001772787.1_genomic.fna	Salmonella_enterica	0.5221	279.84 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGIZ010000001.1 Salmonella enterica strain PNUSAS354573 SAMN35676954-rid18341023.denovo.01, whole genome shotgun sequence	170311..170748	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGIZ010000033.1 Salmonella enterica strain PNUSAS354573 SAMN35676954-rid18341023.guided.25, whole genome shotgun sequence	10979..11416	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032968845.1_PDT001772786.1_genomic.fna	Salmonella_enterica	0.5212	405.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGJA010000001.1 Salmonella enterica strain PNUSAS354571 SAMN35676950-rid18341013.denovo.01, whole genome shotgun sequence	780560..780997	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGJA010000022.1 Salmonella enterica strain PNUSAS354571 SAMN35676950-rid18341013.guided.18, whole genome shotgun sequence	8853..9290	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGJA010000014.1 Salmonella enterica strain PNUSAS354571 SAMN35676950-rid18341013.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOGJA010000017.1 Salmonella enterica strain PNUSAS354571 SAMN35676950-rid18341013.denovo.20, whole genome shotgun sequence	3412..3673																																																avrA	ABOGJA010000002.1	553654..554523	99.54	870	0						
GCA_032968865.1_PDT001772784.1_genomic.fna	Salmonella_enterica	0.5204	412.517 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGJC010000001.1 Salmonella enterica strain PNUSAS354572 SAMN35676951-rid18340993.denovo.01, whole genome shotgun sequence	774424..774861	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGJC010000031.1 Salmonella enterica strain PNUSAS354572 SAMN35676951-rid18340993.guided.22, whole genome shotgun sequence	9706..10143	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGJC010000021.1 Salmonella enterica strain PNUSAS354572 SAMN35676951-rid18340993.denovo.23, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOGJC010000023.1 Salmonella enterica strain PNUSAS354572 SAMN35676951-rid18340993.denovo.25, whole genome shotgun sequence	3398..3659																																																avrA	ABOGJC010000002.1	553433..554302	99.54	870	0						
GCA_032968885.1_PDT001772785.1_genomic.fna	Salmonella_enterica	0.5197	377.078 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(pMET),IncX5	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGJB010000002.1 Salmonella enterica strain PNUSAS354574 SAMN35676953-rid18341003.denovo.02, whole genome shotgun sequence	566771..567208	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGJB010000058.1 Salmonella enterica strain PNUSAS354574 SAMN35676953-rid18341003.guided.20, whole genome shotgun sequence	10502..10939	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOGJB010000025.1 Salmonella enterica strain PNUSAS354574 SAMN35676953-rid18341003.denovo.27, whole genome shotgun sequence	11447..12089	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABOGJB010000023.1 Salmonella enterica strain PNUSAS354574 SAMN35676953-rid18341003.denovo.25, whole genome shotgun sequence	18874..19456		enterobacteriales	IncX5	97.4	576 / 576	ABOGJB010000020.1 Salmonella enterica strain PNUSAS354574 SAMN35676953-rid18341003.denovo.22, whole genome shotgun sequence	32039..32614																																									avrA	ABOGJB010000005.1	97471..98340	99.425	870	0						
GCA_032968975.1_PDT001772783.1_genomic.fna	Salmonella_enterica	0.5201	153.388 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOGJD010000009.1 Salmonella enterica strain PNUSAS354576 SAMN35676948-rid18340983.denovo.09, whole genome shotgun sequence	29911..30345	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOGJD010000058.1 Salmonella enterica strain PNUSAS354576 SAMN35676948-rid18340983.guided.40, whole genome shotgun sequence	8076..8510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	ABOGJD010000020.1 Salmonella enterica strain PNUSAS354576 SAMN35676948-rid18340983.denovo.20, whole genome shotgun sequence	23493..24367																																																																	
GCA_032969005.1_PDT001772778.1_genomic.fna	Salmonella_enterica	0.5222	257.842 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGJJ010000002.1 Salmonella enterica strain PNUSAS354485 SAMN35676737-rid18340943.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGJJ010000039.1 Salmonella enterica strain PNUSAS354485 SAMN35676737-rid18340943.guided.29, whole genome shotgun sequence	8582..9019	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOGJJ010000023.1 Salmonella enterica strain PNUSAS354485 SAMN35676737-rid18340943.denovo.23, whole genome shotgun sequence	44713..45355	enterobacteriales	IncFII(S)	100	262 / 262	ABOGJJ010000023.1 Salmonella enterica strain PNUSAS354485 SAMN35676737-rid18340943.denovo.23, whole genome shotgun sequence	29367..29628																																																avrA	ABOGJJ010000001.1	446730..447598	100	869	0						
GCA_032969045.1_PDT001772775.1_genomic.fna	Salmonella_enterica	0.5201	188.559 KB	9	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGJK010000002.1 Salmonella enterica strain PNUSAS354569 SAMN35676741-rid18340913.denovo.02, whole genome shotgun sequence	270854..271291	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGJK010000048.1 Salmonella enterica strain PNUSAS354569 SAMN35676741-rid18340913.guided.40, whole genome shotgun sequence	8023..8460	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABOGJK010000025.1 Salmonella enterica strain PNUSAS354569 SAMN35676741-rid18340913.denovo.25, whole genome shotgun sequence	62422..63064																																																																	
GCA_032969065.1_PDT001772774.1_genomic.fna	Salmonella_enterica	0.5215	404.908 KB	3	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_746	3848	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_746	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOGJN010000001.1 Salmonella enterica strain PNUSAS354480 SAMN35676734-rid18340903.denovo.01, whole genome shotgun sequence	750316..750753	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOGJN010000025.1 Salmonella enterica strain PNUSAS354480 SAMN35676734-rid18340903.guided.18, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOGJN010000013.1 Salmonella enterica strain PNUSAS354480 SAMN35676734-rid18340903.denovo.13, whole genome shotgun sequence	6323..6856																																																						avrA	ABOGJN010000004.1	174435..175304	99.54	870	0						
GCA_032969085.1_PDT001772772.1_genomic.fna	Salmonella_enterica	0.5211	401.504 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncFII(pCoo)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGJO010000001.1 Salmonella enterica strain PNUSAS354566 SAMN35676742-rid18342073.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGJO010000029.1 Salmonella enterica strain PNUSAS354566 SAMN35676742-rid18342073.guided.19, whole genome shotgun sequence	21807..22244	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGJO010000019.1 Salmonella enterica strain PNUSAS354566 SAMN35676742-rid18342073.denovo.21, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABOGJO010000021.1 Salmonella enterica strain PNUSAS354566 SAMN35676742-rid18342073.denovo.23, whole genome shotgun sequence	3380..3641		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	ABOGJO010000014.1 Salmonella enterica strain PNUSAS354566 SAMN35676742-rid18342073.denovo.14, whole genome shotgun sequence	55451..55711																																									avrA	ABOGJO010000002.1	174749..175618	99.54	870	0						
GCA_032969125.1_PDT001772771.1_genomic.fna	Salmonella_enterica	0.5216	332.249 KB	5	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col(pHAD28),Col440II,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGJP010000001.1 Salmonella enterica strain PNUSAS354478 SAMN35676729-rid18340883.denovo.01, whole genome shotgun sequence	458966..459403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGJP010000047.1 Salmonella enterica strain PNUSAS354478 SAMN35676729-rid18340883.guided.32, whole genome shotgun sequence	5168..5605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABOGJP010000034.1 Salmonella enterica strain PNUSAS354478 SAMN35676729-rid18340883.denovo.37, whole genome shotgun sequence	1939..2067	enterobacteriales	Col440II	98.23	282 / 282	ABOGJP010000034.1 Salmonella enterica strain PNUSAS354478 SAMN35676729-rid18340883.denovo.37, whole genome shotgun sequence	2645..2926		enterobacteriales	IncFIB(S)	100	643 / 643	ABOGJP010000032.1 Salmonella enterica strain PNUSAS354478 SAMN35676729-rid18340883.denovo.35, whole genome shotgun sequence	6830..7472		enterobacteriales	IncFII(S)	100	262 / 262	ABOGJP010000026.1 Salmonella enterica strain PNUSAS354478 SAMN35676729-rid18340883.denovo.27, whole genome shotgun sequence	9325..9586																																		avrA	ABOGJP010000004.1	174642..175511	99.885	870	0						
GCA_032969145.1_PDT001772769.1_genomic.fna	Salmonella_enterica	0.5214	412.563 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGJR010000001.1 Salmonella enterica strain PNUSAS354567 SAMN35676740-rid18340863.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGJR010000028.1 Salmonella enterica strain PNUSAS354567 SAMN35676740-rid18340863.guided.23, whole genome shotgun sequence	3966..4403	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGJR010000019.1 Salmonella enterica strain PNUSAS354567 SAMN35676740-rid18340863.denovo.19, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABOGJR010000020.1 Salmonella enterica strain PNUSAS354567 SAMN35676740-rid18340863.denovo.21, whole genome shotgun sequence	3415..3676																																																avrA	ABOGJR010000002.1	553678..554547	99.54	870	0						
GCA_032969165.1_PDT001772776.1_genomic.fna	Salmonella_enterica	0.5112	256.769 KB	8	aroC_33,dnaN_26,hemD_30,hisD_144,purE_21,sucA_87,thrA_264	1262	18:l,v:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_144	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_264	18	l,v	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 18:l,v:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOGJL010000006.1 Salmonella enterica strain PNUSAS354477 SAMN35676731-rid18340923.denovo.06, whole genome shotgun sequence	143600..144037	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOGJL010000053.1 Salmonella enterica strain PNUSAS354477 SAMN35676731-rid18340923.guided.35, whole genome shotgun sequence	3966..4403	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGJL010000004.1	144590..145459	96.437	870	0						
GCA_032969185.1_PDT001772770.1_genomic.fna	Salmonella_enterica	0.5213	341.062 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOGJQ010000001.1 Salmonella enterica strain PNUSAS354568 SAMN35676743-rid18340873.denovo.01, whole genome shotgun sequence	645096..645533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOGJQ010000026.1 Salmonella enterica strain PNUSAS354568 SAMN35676743-rid18340873.guided.23, whole genome shotgun sequence	2476..2913	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGJQ010000003.1	140050..140920	99.656	871	0						
GCA_032969205.1_PDT001772768.1_genomic.fna	Salmonella_enterica	0.5194	224.781 KB	7	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGJS010000002.1 Salmonella enterica strain PNUSAS354481 SAMN35676735-rid18340853.denovo.02, whole genome shotgun sequence	370303..370740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGJS010000042.1 Salmonella enterica strain PNUSAS354481 SAMN35676735-rid18340853.guided.30, whole genome shotgun sequence	3529..3966	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032969225.1_PDT001772767.1_genomic.fna	Salmonella_enterica	0.5221	349.774 KB	6	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGJU010000001.1 Salmonella enterica strain PNUSAS354483 SAMN35676738-rid18340843.denovo.01, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGJU010000033.1 Salmonella enterica strain PNUSAS354483 SAMN35676738-rid18340843.guided.24, whole genome shotgun sequence	24999..25436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOGJU010000026.1 Salmonella enterica strain PNUSAS354483 SAMN35676738-rid18340843.denovo.29, whole genome shotgun sequence	557..687	enterobacteriales	ColRNAI	90.83	109 / 130	ABOGJU010000024.1 Salmonella enterica strain PNUSAS354483 SAMN35676738-rid18340843.denovo.27, whole genome shotgun sequence	1016..1124																																																avrA	ABOGJU010000011.1	36961..37830	99.425	870	0						
GCA_032969265.1_PDT001772766.1_genomic.fna	Salmonella_enterica	0.5226	486.114 KB	3	aroC_43,dnaN_41,hemD_16,hisD_13,purE_41,sucA_13,thrA_4	2328	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_41	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGJV010000001.1 Salmonella enterica strain PNUSAS354479 SAMN35676730-rid18340833.denovo.01, whole genome shotgun sequence	394632..395069	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGJV010000028.1 Salmonella enterica strain PNUSAS354479 SAMN35676730-rid18340833.guided.23, whole genome shotgun sequence	10439..10876	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032969285.1_PDT001772765.1_genomic.fna	Salmonella_enterica	0.5206	278.672 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	0		2	Col(pHAD28),Col440I	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGJW010000001.1 Salmonella enterica strain PNUSAS354484 SAMN35676732-rid18340823.denovo.01, whole genome shotgun sequence	581410..581847	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGJW010000035.1 Salmonella enterica strain PNUSAS354484 SAMN35676732-rid18340823.denovo.38, whole genome shotgun sequence	808..1644	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGJW010000035.1 Salmonella enterica strain PNUSAS354484 SAMN35676732-rid18340823.denovo.38, whole genome shotgun sequence	1644..2447	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOGJW010000047.1 Salmonella enterica strain PNUSAS354484 SAMN35676732-rid18340823.guided.25, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGJW010000050.1 Salmonella enterica strain PNUSAS354484 SAMN35676732-rid18340823.guided.42, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGJW010000050.1 Salmonella enterica strain PNUSAS354484 SAMN35676732-rid18340823.guided.42, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOGJW010000042.1 Salmonella enterica strain PNUSAS354484 SAMN35676732-rid18340823.denovo.47, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOGJW010000051.1 Salmonella enterica strain PNUSAS354484 SAMN35676732-rid18340823.guided.46, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOGJW010000035.1 Salmonella enterica strain PNUSAS354484 SAMN35676732-rid18340823.denovo.38, whole genome shotgun sequence	2508..3323	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOGJW010000050.1 Salmonella enterica strain PNUSAS354484 SAMN35676732-rid18340823.guided.42, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOGJW010000041.1 Salmonella enterica strain PNUSAS354484 SAMN35676732-rid18340823.denovo.45, whole genome shotgun sequence	1479..1609	enterobacteriales	Col440I	93.64	110 / 114	ABOGJW010000040.1 Salmonella enterica strain PNUSAS354484 SAMN35676732-rid18340823.denovo.44, whole genome shotgun sequence	1568..1677																																																avrA	ABOGJW010000002.1	540741..541610	99.885	870	0						
GCA_032969305.1_PDT001772763.1_genomic.fna	Salmonella_enterica	0.5217	541.309 KB	3	aroC_5,dnaN_14,hemD_18,hisD_561,purE_36,sucA_12,thrA_12	2015	4:y:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_561	purE	100	100	purE_36	sucA	100	100	sucA_12	thrA	100	100	thrA_12	4	y	1,2	Salmonella enterica subspecies enterica (subspecies I)	Coeln		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOGJZ010000001.1 Salmonella enterica strain PNUSAS354476 SAMN35676733-rid18340803.denovo.01, whole genome shotgun sequence	590477..590914	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOGJZ010000022.1 Salmonella enterica strain PNUSAS354476 SAMN35676733-rid18340803.guided.16, whole genome shotgun sequence	8050..8487	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOGJZ010000002.1	554813..555682	99.655	870	0						
GCA_032969325.1_PDT001772764.1_genomic.fna	Salmonella_enterica	0.5213	527.464 KB	5	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGJX010000010.1 Salmonella enterica strain PNUSAS354482 SAMN35676736-rid18340813.denovo.10, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGJX010000030.1 Salmonella enterica strain PNUSAS354482 SAMN35676736-rid18340813.guided.21, whole genome shotgun sequence	5256..5693	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032969365.1_PDT001772757.1_genomic.fna	Salmonella_enterica	0.5216	229.235 KB	6	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGKA010000001.1 Salmonella enterica strain PNUSAS354514 SAMN35676076-rid18340753.denovo.01, whole genome shotgun sequence	494532..494969	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGKA010000038.1 Salmonella enterica strain PNUSAS354514 SAMN35676076-rid18340753.guided.25, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGKA010000002.1	144854..145723	99.31	870	0						
GCA_032969385.1_PDT001772759.1_genomic.fna	Salmonella_enterica	0.5211	284.103 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGKB010000001.1 Salmonella enterica strain PNUSAS354512 SAMN35675994-rid18340773.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGKB010000033.1 Salmonella enterica strain PNUSAS354512 SAMN35675994-rid18340773.guided.24, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGKB010000019.1 Salmonella enterica strain PNUSAS354512 SAMN35675994-rid18340773.denovo.20, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABOGKB010000024.1 Salmonella enterica strain PNUSAS354512 SAMN35675994-rid18340773.denovo.27, whole genome shotgun sequence	3403..3664																																																avrA	ABOGKB010000015.1	39351..40220	99.54	870	0						
GCA_032969405.1_PDT001772755.1_genomic.fna	Salmonella_enterica	0.5225	214.236 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGKD010000001.1 Salmonella enterica strain 1156379001 SAMN35676419-rid18340733.denovo.01, whole genome shotgun sequence	460186..460623	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGKD010000038.1 Salmonella enterica strain 1156379001 SAMN35676419-rid18340733.guided.22, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGKD010000007.1	39430..40299	99.655	870	0						
GCA_032969425.1_PDT001772750.1_genomic.fna	Salmonella_enterica	0.523	333.883 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGKE010000001.1 Salmonella enterica strain 1157114001 SAMN35676422-rid18340683.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGKE010000033.1 Salmonella enterica strain 1157114001 SAMN35676422-rid18340683.guided.22, whole genome shotgun sequence	32338..32775	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGKE010000005.1	39430..40299	99.655	870	0						
GCA_032969445.1_PDT001772751.1_genomic.fna	Salmonella_enterica	0.5206	295.628 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGKC010000001.1 Salmonella enterica strain PNUSAS354513 SAMN35675997-rid18340693.denovo.01, whole genome shotgun sequence	167933..168370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGKC010000037.1 Salmonella enterica strain PNUSAS354513 SAMN35675997-rid18340693.guided.26, whole genome shotgun sequence	7278..7715	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGKC010000002.1	144854..145723	99.31	870	0						
GCA_032969465.1_PDT001772746.1_genomic.fna	Salmonella_enterica	0.5205	278.676 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOGKG010000001.1 Salmonella enterica strain PNUSAS354246 SAMN35676458-rid18340643.denovo.01, whole genome shotgun sequence	620085..620522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOGKG010000054.1 Salmonella enterica strain PNUSAS354246 SAMN35676458-rid18340643.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABOGKG010000024.1 Salmonella enterica strain PNUSAS354246 SAMN35676458-rid18340643.denovo.26, whole genome shotgun sequence	12562..13204																																																						avrA	ABOGKG010000008.1	140553..141421	99.425	870	0						
GCA_032969485.1_PDT001772747.1_genomic.fna	Salmonella_enterica	0.5197	306.948 KB	6	aroC_13,dnaN_11,hemD_25,hisD_72,purE_796,sucA_23,thrA_23	4559	4:a:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_796	sucA	100	100	sucA_23	thrA	100	100	thrA_23	4	a	1,7	Salmonella enterica subspecies enterica (subspecies I)	Arechavaleta		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGKF010000001.1 Salmonella enterica strain PNUSAS354247 SAMN35676459-rid18340653.denovo.01, whole genome shotgun sequence	488544..488981	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGKF010000031.1 Salmonella enterica strain PNUSAS354247 SAMN35676459-rid18340653.guided.14, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGKF010000005.1	217525..218394	99.54	870	0						
GCA_032969505.1_PDT001772733.1_genomic.fna	Salmonella_enterica	0.5207	412.182 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGKH010000001.1 Salmonella enterica strain 1155830001 SAMN35676420-rid18340513.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABOGKH010000020.1 Salmonella enterica strain 1155830001 SAMN35676420-rid18340513.denovo.21, whole genome shotgun sequence	13056..13886	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABOGKH010000020.1 Salmonella enterica strain 1155830001 SAMN35676420-rid18340513.denovo.21, whole genome shotgun sequence	13892..14695	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABOGKH010000032.1 Salmonella enterica strain 1155830001 SAMN35676420-rid18340513.guided.18, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABOGKH010000035.1 Salmonella enterica strain 1155830001 SAMN35676420-rid18340513.guided.28, whole genome shotgun sequence	5239..6069	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABOGKH010000035.1 Salmonella enterica strain 1155830001 SAMN35676420-rid18340513.guided.28, whole genome shotgun sequence	4430..5233	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOGKH010000020.1 Salmonella enterica strain 1155830001 SAMN35676420-rid18340513.denovo.21, whole genome shotgun sequence	11475..12335	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOGKH010000036.1 Salmonella enterica strain 1155830001 SAMN35676420-rid18340513.guided.30, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOGKH010000020.1 Salmonella enterica strain 1155830001 SAMN35676420-rid18340513.denovo.21, whole genome shotgun sequence	14756..15571	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOGKH010000035.1 Salmonella enterica strain 1155830001 SAMN35676420-rid18340513.guided.28, whole genome shotgun sequence	3554..4369	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGKH010000023.1 Salmonella enterica strain 1155830001 SAMN35676420-rid18340513.denovo.24, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOGKH010000024.1 Salmonella enterica strain 1155830001 SAMN35676420-rid18340513.denovo.27, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	95.76	377 / 377	ABOGKH010000020.1 Salmonella enterica strain 1155830001 SAMN35676420-rid18340513.denovo.21, whole genome shotgun sequence	25860..26236																																									avrA	ABOGKH010000009.1	39468..40337	99.54	870	0						
GCA_032969525.1_PDT001772729.1_genomic.fna	Salmonella_enterica	0.5208	401.447 KB	5	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOGKI010000001.1 Salmonella enterica strain PNUSAS354521 SAMN35676075-rid18340473.denovo.01, whole genome shotgun sequence	779774..780211	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOGKI010000030.1 Salmonella enterica strain PNUSAS354521 SAMN35676075-rid18340473.guided.23, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOGKI010000023.1 Salmonella enterica strain PNUSAS354521 SAMN35676075-rid18340473.denovo.26, whole genome shotgun sequence	239..369																																																						avrA	ABOGKI010000004.1	409320..410189	99.425	870	0						
GCA_032969545.1_PDT001772731.1_genomic.fna	Salmonella_enterica	0.5214	405.99 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGKJ010000001.1 Salmonella enterica strain 1156597001 SAMN35676421-rid18340493.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGKJ010000030.1 Salmonella enterica strain 1156597001 SAMN35676421-rid18340493.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGKJ010000019.1 Salmonella enterica strain 1156597001 SAMN35676421-rid18340493.denovo.20, whole genome shotgun sequence	6836..7478	enterobacteriales	IncFII(S)	100	262 / 262	ABOGKJ010000021.1 Salmonella enterica strain 1156597001 SAMN35676421-rid18340493.denovo.24, whole genome shotgun sequence	3415..3676																																																avrA	ABOGKJ010000002.1	553083..553952	99.54	870	0						
GCA_032969565.1_PDT001772725.1_genomic.fna	Salmonella_enterica	0.5218	219.305 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGKK010000001.1 Salmonella enterica strain PNUSAS354518 SAMN35675996-rid18340433.denovo.01, whole genome shotgun sequence	337830..338267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGKK010000043.1 Salmonella enterica strain PNUSAS354518 SAMN35675996-rid18340433.guided.36, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOGKK010000003.1	171427..172295	99.77	870	0						
GCA_032969585.1_PDT001772721.1_genomic.fna	Salmonella_enterica	0.5214	267.701 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOGKM010000002.1 Salmonella enterica strain PNUSAS354516 SAMN35675988-rid18340393.denovo.02, whole genome shotgun sequence	293541..293978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOGKM010000031.1 Salmonella enterica strain PNUSAS354516 SAMN35675988-rid18340393.guided.24, whole genome shotgun sequence	5135..5572	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.93	374 / 374	ABOGKM010000020.1 Salmonella enterica strain PNUSAS354516 SAMN35675988-rid18340393.denovo.21, whole genome shotgun sequence	32399..32772																																																						avrA	ABOGKM010000001.1	438221..439089	99.425	870	0						
GCA_032969605.1_PDT001772723.1_genomic.fna	Salmonella_enterica	0.5211	469.745 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGKL010000001.1 Salmonella enterica strain PNUSAS354511 SAMN35675995-rid18340413.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGKL010000027.1 Salmonella enterica strain PNUSAS354511 SAMN35675995-rid18340413.guided.16, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGKL010000020.1 Salmonella enterica strain PNUSAS354511 SAMN35675995-rid18340413.denovo.23, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABOGKL010000022.1 Salmonella enterica strain PNUSAS354511 SAMN35675995-rid18340413.denovo.25, whole genome shotgun sequence	3415..3676																																																avrA	ABOGKL010000008.1	174754..175623	99.54	870	0						
GCA_032969625.1_PDT001772720.1_genomic.fna	Salmonella_enterica	0.5205	278.672 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	3	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGKN010000002.1 Salmonella enterica strain PNUSAS354520 SAMN35675998-rid18340383.denovo.02, whole genome shotgun sequence	145550..145987	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGKN010000053.1 Salmonella enterica strain PNUSAS354520 SAMN35675998-rid18340383.guided.25, whole genome shotgun sequence	21774..22211	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOGKN010000035.1 Salmonella enterica strain PNUSAS354520 SAMN35675998-rid18340383.denovo.38, whole genome shotgun sequence	13366..14226	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOGKN010000056.1 Salmonella enterica strain PNUSAS354520 SAMN35675998-rid18340383.guided.47, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(B)	100	1206/1206	ABOGKN010000035.1 Salmonella enterica strain PNUSAS354520 SAMN35675998-rid18340383.denovo.38, whole genome shotgun sequence	10940..12145	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGKN010000055.1 Salmonella enterica strain PNUSAS354520 SAMN35675998-rid18340383.guided.39, whole genome shotgun sequence	6725..7930	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																													avrA	ABOGKN010000001.1	540741..541610	99.885	870	0						
GCA_032969645.1_PDT001772716.1_genomic.fna	Salmonella_enterica	0.522	207.446 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGKQ010000002.1 Salmonella enterica strain PNUSAS354508 SAMN35675986-rid18340343.denovo.02, whole genome shotgun sequence	145429..145866	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGKQ010000035.1 Salmonella enterica strain PNUSAS354508 SAMN35675986-rid18340343.guided.31, whole genome shotgun sequence	5121..5558	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOGKQ010000005.1	95312..96180	99.77	870	0						
GCA_032969665.1_PDT001772718.1_genomic.fna	Salmonella_enterica	0.5217	268.169 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGKO010000001.1 Salmonella enterica strain PNUSAS354519 SAMN35675991-rid18340363.denovo.01, whole genome shotgun sequence	337830..338267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGKO010000047.1 Salmonella enterica strain PNUSAS354519 SAMN35675991-rid18340363.guided.33, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOGKO010000006.1	94139..95007	99.77	870	0						
GCA_032969675.1_PDT001772714.1_genomic.fna	Salmonella_enterica	0.5214	324.384 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGKR010000003.1 Salmonella enterica strain PNUSAS354515 SAMN35675992-rid18340323.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGKR010000047.1 Salmonella enterica strain PNUSAS354515 SAMN35675992-rid18340323.guided.32, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOGKR010000015.1 Salmonella enterica strain PNUSAS354515 SAMN35675992-rid18340323.denovo.15, whole genome shotgun sequence	48414..49056	enterobacteriales	IncFII(S)	100	262 / 262	ABOGKR010000015.1 Salmonella enterica strain PNUSAS354515 SAMN35675992-rid18340323.denovo.15, whole genome shotgun sequence	64141..64402		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGKR010000017.1 Salmonella enterica strain PNUSAS354515 SAMN35675992-rid18340323.denovo.17, whole genome shotgun sequence	68651..68792																																									avrA	ABOGKR010000001.1	446742..447610	100	869	0						
GCA_032969695.1_PDT001772717.1_genomic.fna	Salmonella_enterica	0.5206	226.403 KB	9	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGKP010000002.1 Salmonella enterica strain PNUSAS354507 SAMN35675990-rid18340353.denovo.02, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGKP010000042.1 Salmonella enterica strain PNUSAS354507 SAMN35675990-rid18340353.guided.22, whole genome shotgun sequence	44293..44730	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOGKP010000021.1 Salmonella enterica strain PNUSAS354507 SAMN35675990-rid18340353.denovo.21, whole genome shotgun sequence	5898..6431																																																						avrA	ABOGKP010000009.1	188459..189328	99.425	870	0						
GCA_032969725.1_PDT001772713.1_genomic.fna	Salmonella_enterica	0.5214	219.734 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGKS010000001.1 Salmonella enterica strain PNUSAS354517 SAMN35675985-rid18340313.denovo.01, whole genome shotgun sequence	381673..382110	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGKS010000036.1 Salmonella enterica strain PNUSAS354517 SAMN35675985-rid18340313.guided.19, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOGKS010000003.1	218216..219084	99.77	870	0						
GCA_032969745.1_PDT001772712.1_genomic.fna	Salmonella_enterica	0.5211	212.946 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGKT010000001.1 Salmonella enterica strain PNUSAS354509 SAMN35675987-rid18340303.denovo.01, whole genome shotgun sequence	727904..728341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGKT010000043.1 Salmonella enterica strain PNUSAS354509 SAMN35675987-rid18340303.guided.18, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGKT010000003.1	95452..96321	99.195	870	0						
GCA_032969765.1_PDT001772711.1_genomic.fna	Salmonella_enterica	0.5213	416.53 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGKU010000001.1 Salmonella enterica strain PNUSAS354506 SAMN35675989-rid18340293.denovo.01, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGKU010000036.1 Salmonella enterica strain PNUSAS354506 SAMN35675989-rid18340293.guided.19, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOGKU010000015.1 Salmonella enterica strain PNUSAS354506 SAMN35675989-rid18340293.denovo.15, whole genome shotgun sequence	68637..69842	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGKU010000038.1 Salmonella enterica strain PNUSAS354506 SAMN35675989-rid18340293.guided.24, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGKU010000015.1 Salmonella enterica strain PNUSAS354506 SAMN35675989-rid18340293.denovo.15, whole genome shotgun sequence	76228..76369	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGKU010000038.1 Salmonella enterica strain PNUSAS354506 SAMN35675989-rid18340293.guided.24, whole genome shotgun sequence	3169..3310																																																avrA	ABOGKU010000008.1	39350..40219	98.966	870	0						
GCA_032969785.1_PDT001772710.1_genomic.fna	Salmonella_enterica	0.5221	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGKV010000001.1 Salmonella enterica strain PNUSAS354510 SAMN35675993-rid18340283.denovo.01, whole genome shotgun sequence	831970..832407	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGKV010000026.1 Salmonella enterica strain PNUSAS354510 SAMN35675993-rid18340283.guided.17, whole genome shotgun sequence	21429..21866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGKV010000002.1	157538..158407	98.966	870	0						
GCA_032969865.1_PDT001772702.1_genomic.fna	Salmonella_enterica	0.5226	619.345 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aadA1,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aac(3)-VIa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	3	Col156,ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOGKZ010000001.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.denovo.01, whole genome shotgun sequence	1329422..1329859	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOGKZ010000018.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.denovo.19, whole genome shotgun sequence	2842..3744	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	99.75	792/792	ABOGKZ010000018.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.denovo.19, whole genome shotgun sequence	1887..2678	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGKZ010000018.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.denovo.19, whole genome shotgun sequence	1887..2678	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOGKZ010000022.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.denovo.28, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOGKZ010000022.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.denovo.28, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGKZ010000022.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.denovo.28, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGKZ010000022.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.denovo.28, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGKZ010000022.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.denovo.28, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOGKZ010000041.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.guided.23, whole genome shotgun sequence	4926..5363	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOGKZ010000042.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.guided.25, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aph(6)-Id	100	837/837	ABOGKZ010000044.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.guided.27, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOGKZ010000044.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.guided.27, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGKZ010000044.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.guided.27, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGKZ010000044.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.guided.27, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGKZ010000044.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.guided.27, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	aadA1	99.75	792/792	ABOGKZ010000046.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.guided.34, whole genome shotgun sequence	1928..2719	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGKZ010000046.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.guided.34, whole genome shotgun sequence	1928..2719	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOGKZ010000018.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.denovo.19, whole genome shotgun sequence	9744..10583	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGKZ010000043.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.guided.26, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOGKZ010000023.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.denovo.30, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGKZ010000045.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.guided.29, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	ABOGKZ010000026.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.denovo.33, whole genome shotgun sequence	967..1118	enterobacteriales	ColpVC	98.96	193 / 193	ABOGKZ010000029.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.denovo.37, whole genome shotgun sequence	805..997		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGKZ010000018.1 Salmonella enterica strain PNUSAS354188 SAMN35675778-rid18340203.denovo.19, whole genome shotgun sequence	20105..20246																																									avrA	ABOGKZ010000002.1	573274..574143	99.655	870	0						
GCA_032969885.1_PDT001772701.1_genomic.fna	Salmonella_enterica	0.5194	368.134 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGLB010000001.1 Salmonella enterica strain PNUSAS354193 SAMN35675769-rid18340193.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGLB010000039.1 Salmonella enterica strain PNUSAS354193 SAMN35675769-rid18340193.guided.24, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOGLB010000005.1 Salmonella enterica strain PNUSAS354193 SAMN35675769-rid18340193.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOGLB010000041.1 Salmonella enterica strain PNUSAS354193 SAMN35675769-rid18340193.guided.27, whole genome shotgun sequence	6426..6848	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGLB010000002.1	169368..170237	99.195	870	0						
GCA_032969905.1_PDT001772700.1_genomic.fna	Salmonella_enterica	0.522	208.51 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGLA010000001.1 Salmonella enterica strain PNUSAS354189 SAMN35675775-rid18340183.denovo.01, whole genome shotgun sequence	337830..338267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGLA010000048.1 Salmonella enterica strain PNUSAS354189 SAMN35675775-rid18340183.guided.29, whole genome shotgun sequence	11921..12358	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOGLA010000006.1	98459..99327	99.77	870	0						
GCA_032969925.1_PDT001772699.1_genomic.fna	Salmonella_enterica	0.5207	430.47 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGLC010000001.1 Salmonella enterica strain PNUSAS354184 SAMN35675772-rid18340173.denovo.01, whole genome shotgun sequence	384606..385043	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGLC010000042.1 Salmonella enterica strain PNUSAS354184 SAMN35675772-rid18340173.guided.21, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGLC010000003.1	504334..505204	99.196	871	0						
GCA_032969945.1_PDT001772698.1_genomic.fna	Salmonella_enterica	0.5218	202.449 KB	10	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGLD010000009.1 Salmonella enterica strain PNUSAS354185 SAMN35675779-rid18340163.denovo.09, whole genome shotgun sequence	144416..144853	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGLD010000054.1 Salmonella enterica strain PNUSAS354185 SAMN35675779-rid18340163.guided.30, whole genome shotgun sequence	7635..8072	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032969965.1_PDT001772697.1_genomic.fna	Salmonella_enterica	0.5212	407.239 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGLE010000001.1 Salmonella enterica strain PNUSAS354186 SAMN35675774-rid18340153.denovo.01, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGLE010000033.1 Salmonella enterica strain PNUSAS354186 SAMN35675774-rid18340153.guided.22, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGLE010000009.1	192373..193241	99.195	870	0						
GCA_032969985.1_PDT001772696.1_genomic.fna	Salmonella_enterica	0.5207	289.669 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGLF010000001.1 Salmonella enterica strain PNUSAS354181 SAMN35675777-rid18340143.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGLF010000027.1 Salmonella enterica strain PNUSAS354181 SAMN35675777-rid18340143.guided.21, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGLF010000021.1 Salmonella enterica strain PNUSAS354181 SAMN35675777-rid18340143.denovo.23, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOGLF010000018.1 Salmonella enterica strain PNUSAS354181 SAMN35675777-rid18340143.denovo.18, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABOGLF010000019.1 Salmonella enterica strain PNUSAS354181 SAMN35675777-rid18340143.denovo.19, whole genome shotgun sequence	32011..32384																																									avrA	ABOGLF010000002.1	175109..175978	99.54	870	0						
GCA_032969995.1_PDT001772695.1_genomic.fna	Salmonella_enterica	0.521	386.287 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGLG010000001.1 Salmonella enterica strain PNUSAS354183 SAMN35675773-rid18340133.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGLG010000024.1 Salmonella enterica strain PNUSAS354183 SAMN35675773-rid18340133.guided.16, whole genome shotgun sequence	15859..16296	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032970025.1_PDT001772694.1_genomic.fna	Salmonella_enterica	0.5221	194.67 KB	10	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGLH010000002.1 Salmonella enterica strain PNUSAS354187 SAMN35675776-rid18340123.denovo.02, whole genome shotgun sequence	68194..68631	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGLH010000053.1 Salmonella enterica strain PNUSAS354187 SAMN35675776-rid18340123.guided.40, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032970045.1_PDT001772692.1_genomic.fna	Salmonella_enterica	0.5211	406.452 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGLI010000001.1 Salmonella enterica strain PNUSAS354182 SAMN35675768-rid18340103.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGLI010000025.1 Salmonella enterica strain PNUSAS354182 SAMN35675768-rid18340103.guided.19, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGLI010000018.1 Salmonella enterica strain PNUSAS354182 SAMN35675768-rid18340103.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOGLI010000015.1 Salmonella enterica strain PNUSAS354182 SAMN35675768-rid18340103.denovo.16, whole genome shotgun sequence	37108..37369																																																avrA	ABOGLI010000002.1	585342..586211	99.54	870	0						
GCA_032970065.1_PDT001772693.1_genomic.fna	Salmonella_enterica	0.5215	225.553 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGLJ010000001.1 Salmonella enterica strain PNUSAS354192 SAMN35675767-rid18340113.denovo.01, whole genome shotgun sequence	145192..145629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGLJ010000055.1 Salmonella enterica strain PNUSAS354192 SAMN35675767-rid18340113.guided.24, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOGLJ010000025.1 Salmonella enterica strain PNUSAS354192 SAMN35675767-rid18340113.denovo.26, whole genome shotgun sequence	44728..45370	enterobacteriales	IncFII(S)	100	262 / 262	ABOGLJ010000025.1 Salmonella enterica strain PNUSAS354192 SAMN35675767-rid18340113.denovo.26, whole genome shotgun sequence	29382..29643																																																avrA	ABOGLJ010000009.1	94138..95007	99.885	870	0						
GCA_032970085.1_PDT001772690.1_genomic.fna	Salmonella_enterica	0.5212	383.766 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGLL010000001.1 Salmonella enterica strain PNUSAS354190 SAMN35675770-rid18340083.denovo.01, whole genome shotgun sequence	384606..385043	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGLL010000041.1 Salmonella enterica strain PNUSAS354190 SAMN35675770-rid18340083.guided.22, whole genome shotgun sequence	3492..3929	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGLL010000002.1	504146..505016	99.196	871	0						
GCA_032970105.1_PDT001772691.1_genomic.fna	Salmonella_enterica	0.5219	405.931 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOGLK010000001.1 Salmonella enterica strain PNUSAS354191 SAMN35675771-rid18340093.denovo.01, whole genome shotgun sequence	499266..499703	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOGLK010000022.1 Salmonella enterica strain PNUSAS354191 SAMN35675771-rid18340093.guided.18, whole genome shotgun sequence	8853..9290	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGLK010000002.1	179088..179957	99.54	870	0						
GCA_032970145.1_PDT001772581.1_genomic.fna	Salmonella_enterica	0.5212	322.048 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGLN010000001.1 Salmonella enterica strain PNUSAS354416 SAMN35674923-rid18339873.denovo.01, whole genome shotgun sequence	728086..728523	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGLN010000036.1 Salmonella enterica strain PNUSAS354416 SAMN35674923-rid18339873.guided.20, whole genome shotgun sequence	9514..9951	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGLN010000003.1	153057..153926	99.195	870	0						
GCA_032970165.1_PDT001772579.1_genomic.fna	Salmonella_enterica	0.5232	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGLP010000001.1 Salmonella enterica strain PNUSAS354394 SAMN35674571-rid18340053.denovo.01, whole genome shotgun sequence	573956..574393	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGLP010000033.1 Salmonella enterica strain PNUSAS354394 SAMN35674571-rid18340053.guided.22, whole genome shotgun sequence	8799..9236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGLP010000002.1	149828..150697	99.655	870	0						
GCA_032970185.1_PDT001772580.1_genomic.fna	Salmonella_enterica	0.521	405.859 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGLO010000001.1 Salmonella enterica strain PNUSAS354377 SAMN35674579-rid18340063.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGLO010000026.1 Salmonella enterica strain PNUSAS354377 SAMN35674579-rid18340063.guided.15, whole genome shotgun sequence	4035..4472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGLO010000017.1 Salmonella enterica strain PNUSAS354377 SAMN35674579-rid18340063.denovo.19, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABOGLO010000018.1 Salmonella enterica strain PNUSAS354377 SAMN35674579-rid18340063.denovo.21, whole genome shotgun sequence	3415..3676																																																avrA	ABOGLO010000002.1	553474..554343	99.54	870	0						
GCA_032970205.1_PDT001772578.1_genomic.fna	Salmonella_enterica	0.5228	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGLR010000001.1 Salmonella enterica strain PNUSAS354379 SAMN35674562-rid18339863.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGLR010000037.1 Salmonella enterica strain PNUSAS354379 SAMN35674562-rid18339863.guided.24, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGLR010000002.1	94085..94954	99.655	870	0						
GCA_032970225.1_PDT001772577.1_genomic.fna	Salmonella_enterica	0.5207	357.365 KB	6	aroC_118,dnaN_175,hemD_8,hisD_115,purE_88,sucA_906,thrA_84	6063	35:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,Col440II	aroC	100	100	aroC_118	dnaN	100	100	dnaN_175	hemD	100	100	hemD_8	hisD	100	100	hisD_115	purE	100	100	purE_88	sucA	100	100	sucA_906	thrA	100	100	thrA_84	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOGLQ010000006.1 Salmonella enterica strain PNUSAS354391 SAMN35674580-rid18340043.denovo.06, whole genome shotgun sequence	276860..277297	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOGLQ010000047.1 Salmonella enterica strain PNUSAS354391 SAMN35674580-rid18340043.guided.30, whole genome shotgun sequence	3148..3585	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	ABOGLQ010000031.1 Salmonella enterica strain PNUSAS354391 SAMN35674580-rid18340043.denovo.34, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440II	97.16	282 / 282	ABOGLQ010000028.1 Salmonella enterica strain PNUSAS354391 SAMN35674580-rid18340043.denovo.31, whole genome shotgun sequence	5136..5417																																																avrA	ABOGLQ010000001.1	143028..143897	99.08	870	0						
GCA_032970245.1_PDT001772576.1_genomic.fna	Salmonella_enterica	0.5207	364.853 KB	6	aroC_16,dnaN_2,hemD_95,hisD_117,purE_36,sucA_39,thrA_117	350	8:e,h:1,2	1	aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_95	hisD	100	100	hisD_117	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_117	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGLS010000002.1 Salmonella enterica strain PNUSAS354409 SAMN35674576-rid18339853.denovo.02, whole genome shotgun sequence	37877..38314	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOGLS010000020.1 Salmonella enterica strain PNUSAS354409 SAMN35674576-rid18339853.denovo.20, whole genome shotgun sequence	5891..6424																																																						avrA	ABOGLS010000013.1	109931..110800	99.31	870	0						
GCA_032970325.1_PDT001772575.1_genomic.fna	Salmonella_enterica	0.5212	411.925 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGLT010000001.1 Salmonella enterica strain PNUSAS354378 SAMN35674572-rid18340033.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGLT010000026.1 Salmonella enterica strain PNUSAS354378 SAMN35674572-rid18340033.guided.15, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGLT010000017.1 Salmonella enterica strain PNUSAS354378 SAMN35674572-rid18340033.denovo.19, whole genome shotgun sequence	6837..7479	enterobacteriales	IncFII(S)	100	262 / 262	ABOGLT010000018.1 Salmonella enterica strain PNUSAS354378 SAMN35674572-rid18340033.denovo.20, whole genome shotgun sequence	3383..3644																																																avrA	ABOGLT010000002.1	553474..554343	99.54	870	0						
GCA_032970345.1_PDT001772574.1_genomic.fna	Salmonella_enterica	0.5223	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGLU010000001.1 Salmonella enterica strain PNUSAS354385 SAMN35674573-rid18339843.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGLU010000029.1 Salmonella enterica strain PNUSAS354385 SAMN35674573-rid18339843.guided.17, whole genome shotgun sequence	34840..35277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGLU010000002.1	147026..147895	98.966	870	0						
GCA_032970365.1_PDT001772573.1_genomic.fna	Salmonella_enterica	0.5206	477.349 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGLV010000001.1 Salmonella enterica strain PNUSAS354399 SAMN35674570-rid18339833.denovo.01, whole genome shotgun sequence	200058..200495	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGLV010000029.1 Salmonella enterica strain PNUSAS354399 SAMN35674570-rid18339833.guided.16, whole genome shotgun sequence	22277..22714	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGLV010000019.1 Salmonella enterica strain PNUSAS354399 SAMN35674570-rid18339833.denovo.20, whole genome shotgun sequence	6796..7438	enterobacteriales	IncFII(S)	100	262 / 262	ABOGLV010000020.1 Salmonella enterica strain PNUSAS354399 SAMN35674570-rid18339833.denovo.23, whole genome shotgun sequence	3410..3671		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOGLV010000013.1 Salmonella enterica strain PNUSAS354399 SAMN35674570-rid18339833.denovo.13, whole genome shotgun sequence	86689..86830																																									avrA	ABOGLV010000002.1	553187..554056	99.54	870	0						
GCA_032970385.1_PDT001772572.1_genomic.fna	Salmonella_enterica	0.5223	728.227 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(Yp),IncFII(Yp),IncN2	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOGLW010000001.1 Salmonella enterica strain PNUSAS354407 SAMN35674569-rid18340023.denovo.01, whole genome shotgun sequence	644842..645279	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOGLW010000026.1 Salmonella enterica strain PNUSAS354407 SAMN35674569-rid18340023.guided.20, whole genome shotgun sequence	7297..7734	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOGLW010000019.1 Salmonella enterica strain PNUSAS354407 SAMN35674569-rid18340023.denovo.21, whole genome shotgun sequence	4449..5091	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOGLW010000011.1 Salmonella enterica strain PNUSAS354407 SAMN35674569-rid18340023.denovo.11, whole genome shotgun sequence	80291..80517		enterobacteriales	IncFII(Yp)	90.74	216 / 230	ABOGLW010000011.1 Salmonella enterica strain PNUSAS354407 SAMN35674569-rid18340023.denovo.11, whole genome shotgun sequence	27241..27455		enterobacteriales	IncN2	97.48	477 / 477	ABOGLW010000016.1 Salmonella enterica strain PNUSAS354407 SAMN35674569-rid18340023.denovo.16, whole genome shotgun sequence	32202..32678																																		avrA	ABOGLW010000002.1	630981..631851	99.656	871	0						
GCA_032970505.1_PDT001772570.1_genomic.fna	Salmonella_enterica	0.5213	694.77 KB	2	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGLY010000001.1 Salmonella enterica strain PNUSAS354384 SAMN35674574-rid18340013.denovo.01, whole genome shotgun sequence	815076..815513	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGLY010000020.1 Salmonella enterica strain PNUSAS354384 SAMN35674574-rid18340013.guided.11, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGLY010000014.1 Salmonella enterica strain PNUSAS354384 SAMN35674574-rid18340013.denovo.15, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOGLY010000011.1 Salmonella enterica strain PNUSAS354384 SAMN35674574-rid18340013.denovo.12, whole genome shotgun sequence	37108..37369																																																avrA	ABOGLY010000002.1	553182..554051	99.54	870	0						
GCA_032970525.1_PDT001772569.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGLZ010000001.1 Salmonella enterica strain PNUSAS354411 SAMN35674567-rid18340003.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGLZ010000028.1 Salmonella enterica strain PNUSAS354411 SAMN35674567-rid18340003.guided.21, whole genome shotgun sequence	7426..7863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGLZ010000019.1 Salmonella enterica strain PNUSAS354411 SAMN35674567-rid18340003.denovo.19, whole genome shotgun sequence	6845..7487	enterobacteriales	IncFII(S)	100	262 / 262	ABOGLZ010000020.1 Salmonella enterica strain PNUSAS354411 SAMN35674567-rid18340003.denovo.20, whole genome shotgun sequence	3423..3684																																																avrA	ABOGLZ010000002.1	553575..554444	99.54	870	0						
GCA_032970545.1_PDT001772571.1_genomic.fna	Salmonella_enterica	0.5204	406.452 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		4	IncFIB(S),IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGLX010000001.1 Salmonella enterica strain PNUSAS354389 SAMN35674577-rid18339823.denovo.01, whole genome shotgun sequence	774552..774989	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGLX010000015.1 Salmonella enterica strain PNUSAS354389 SAMN35674577-rid18339823.denovo.15, whole genome shotgun sequence	37044..37880	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGLX010000015.1 Salmonella enterica strain PNUSAS354389 SAMN35674577-rid18339823.denovo.15, whole genome shotgun sequence	37880..38683	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABOGLX010000029.1 Salmonella enterica strain PNUSAS354389 SAMN35674577-rid18339823.guided.20, whole genome shotgun sequence	12454..12891	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGLX010000030.1 Salmonella enterica strain PNUSAS354389 SAMN35674577-rid18339823.guided.21, whole genome shotgun sequence	4419..5255	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGLX010000030.1 Salmonella enterica strain PNUSAS354389 SAMN35674577-rid18339823.guided.21, whole genome shotgun sequence	3616..4419	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOGLX010000021.1 Salmonella enterica strain PNUSAS354389 SAMN35674577-rid18339823.denovo.26, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOGLX010000032.1 Salmonella enterica strain PNUSAS354389 SAMN35674577-rid18339823.guided.25, whole genome shotgun sequence	3944..4804	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOGLX010000015.1 Salmonella enterica strain PNUSAS354389 SAMN35674577-rid18339823.denovo.15, whole genome shotgun sequence	38744..39559	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOGLX010000030.1 Salmonella enterica strain PNUSAS354389 SAMN35674577-rid18339823.guided.21, whole genome shotgun sequence	2740..3555	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOGLX010000015.1 Salmonella enterica strain PNUSAS354389 SAMN35674577-rid18339823.denovo.15, whole genome shotgun sequence	43072..44271	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGLX010000033.1 Salmonella enterica strain PNUSAS354389 SAMN35674577-rid18339823.guided.28, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGLX010000014.1 Salmonella enterica strain PNUSAS354389 SAMN35674577-rid18339823.denovo.14, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOGLX010000019.1 Salmonella enterica strain PNUSAS354389 SAMN35674577-rid18339823.denovo.23, whole genome shotgun sequence	3404..3665		enterobacteriales	IncN	100	514 / 514	ABOGLX010000015.1 Salmonella enterica strain PNUSAS354389 SAMN35674577-rid18339823.denovo.15, whole genome shotgun sequence	18737..19250		enterobacteriales	IncX1	98.66	374 / 374	ABOGLX010000016.1 Salmonella enterica strain PNUSAS354389 SAMN35674577-rid18339823.denovo.16, whole genome shotgun sequence	6057..6430																																		avrA	ABOGLX010000002.1	552981..553850	99.54	870	0						
GCA_032970565.1_PDT001772568.1_genomic.fna	Salmonella_enterica	0.5209	412.518 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGMA010000001.1 Salmonella enterica strain PNUSAS354400 SAMN35674541-rid18339813.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABOGMA010000018.1 Salmonella enterica strain PNUSAS354400 SAMN35674541-rid18339813.denovo.18, whole genome shotgun sequence	573..1403	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABOGMA010000018.1 Salmonella enterica strain PNUSAS354400 SAMN35674541-rid18339813.denovo.18, whole genome shotgun sequence	1409..2212	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABOGMA010000028.1 Salmonella enterica strain PNUSAS354400 SAMN35674541-rid18339813.guided.23, whole genome shotgun sequence	3169..3606	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABOGMA010000029.1 Salmonella enterica strain PNUSAS354400 SAMN35674541-rid18339813.guided.24, whole genome shotgun sequence	5239..6069	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABOGMA010000029.1 Salmonella enterica strain PNUSAS354400 SAMN35674541-rid18339813.guided.24, whole genome shotgun sequence	4430..5233	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOGMA010000021.1 Salmonella enterica strain PNUSAS354400 SAMN35674541-rid18339813.denovo.26, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOGMA010000030.1 Salmonella enterica strain PNUSAS354400 SAMN35674541-rid18339813.guided.25, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOGMA010000018.1 Salmonella enterica strain PNUSAS354400 SAMN35674541-rid18339813.denovo.18, whole genome shotgun sequence	2273..3088	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOGMA010000029.1 Salmonella enterica strain PNUSAS354400 SAMN35674541-rid18339813.guided.24, whole genome shotgun sequence	3554..4369	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGMA010000014.1 Salmonella enterica strain PNUSAS354400 SAMN35674541-rid18339813.denovo.14, whole genome shotgun sequence	32997..33639	enterobacteriales	IncFII(S)	100	262 / 262	ABOGMA010000019.1 Salmonella enterica strain PNUSAS354400 SAMN35674541-rid18339813.denovo.21, whole genome shotgun sequence	3398..3659		enterobacteriales	IncX1	95.76	377 / 377	ABOGMA010000018.1 Salmonella enterica strain PNUSAS354400 SAMN35674541-rid18339813.denovo.18, whole genome shotgun sequence	13377..13753																																									avrA	ABOGMA010000002.1	553187..554056	99.54	870	0						
GCA_032970575.1_PDT001772567.1_genomic.fna	Salmonella_enterica	0.5206	258.364 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGMC010000001.1 Salmonella enterica strain PNUSAS354413 SAMN35674552-rid18339993.denovo.01, whole genome shotgun sequence	462090..462527	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOGMC010000040.1 Salmonella enterica strain PNUSAS354413 SAMN35674552-rid18339993.guided.30, whole genome shotgun sequence	1451..1888	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGMC010000041.1 Salmonella enterica strain PNUSAS354413 SAMN35674552-rid18339993.guided.31, whole genome shotgun sequence	1451..1888	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGMC010000002.1	551339..552208	99.195	870	0						
GCA_032970645.1_PDT001772565.1_genomic.fna	Salmonella_enterica	0.5211	401.259 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOGMD010000001.1 Salmonella enterica strain PNUSAS354402 SAMN35674540-rid18339983.denovo.01, whole genome shotgun sequence	779743..780180	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOGMD010000038.1 Salmonella enterica strain PNUSAS354402 SAMN35674540-rid18339983.guided.25, whole genome shotgun sequence	4911..5348	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABOGMD010000026.1 Salmonella enterica strain PNUSAS354402 SAMN35674540-rid18339983.denovo.29, whole genome shotgun sequence	3981..4111																																																						avrA	ABOGMD010000005.1	140114..140983	99.425	870	0						
GCA_032970665.1_PDT001772566.1_genomic.fna	Salmonella_enterica	0.521	225.554 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGMB010000001.1 Salmonella enterica strain PNUSAS354398 SAMN35674568-rid18339803.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGMB010000050.1 Salmonella enterica strain PNUSAS354398 SAMN35674568-rid18339803.guided.35, whole genome shotgun sequence	13377..13814	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOGMB010000025.1 Salmonella enterica strain PNUSAS354398 SAMN35674568-rid18339803.denovo.25, whole genome shotgun sequence	44728..45370	enterobacteriales	IncFII(S)	100	262 / 262	ABOGMB010000025.1 Salmonella enterica strain PNUSAS354398 SAMN35674568-rid18339803.denovo.25, whole genome shotgun sequence	29382..29643																																																avrA	ABOGMB010000003.1	174651..175519	100	869	0						
GCA_032970705.1_PDT001772564.1_genomic.fna	Salmonella_enterica	0.5213	412.336 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGME010000001.1 Salmonella enterica strain PNUSAS354393 SAMN35674545-rid18339793.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGME010000027.1 Salmonella enterica strain PNUSAS354393 SAMN35674545-rid18339793.guided.21, whole genome shotgun sequence	578..1015	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGME010000016.1 Salmonella enterica strain PNUSAS354393 SAMN35674545-rid18339793.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOGME010000018.1 Salmonella enterica strain PNUSAS354393 SAMN35674545-rid18339793.denovo.19, whole genome shotgun sequence	3391..3652																																																avrA	ABOGME010000002.1	553636..554505	99.54	870	0						
GCA_032970765.1_PDT001772563.1_genomic.fna	Salmonella_enterica	0.521	278.475 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGMF010000002.1 Salmonella enterica strain PNUSAS354408 SAMN35674542-rid18339783.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGMF010000052.1 Salmonella enterica strain PNUSAS354408 SAMN35674542-rid18339783.guided.43, whole genome shotgun sequence	96..533	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOGMF010000023.1 Salmonella enterica strain PNUSAS354408 SAMN35674542-rid18339783.denovo.23, whole genome shotgun sequence	44718..45360	enterobacteriales	IncFII(S)	100	262 / 262	ABOGMF010000023.1 Salmonella enterica strain PNUSAS354408 SAMN35674542-rid18339783.denovo.23, whole genome shotgun sequence	29372..29633																																																avrA	ABOGMF010000004.1	174651..175519	100	869	0						
GCA_032970785.1_PDT001772562.1_genomic.fna	Salmonella_enterica	0.5203	519.128 KB	3	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,qnrS1,qnrS1,tet(A),tet(A)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGMG010000001.1 Salmonella enterica strain PNUSAS354414 SAMN35674575-rid18339973.denovo.01, whole genome shotgun sequence	641702..642139	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGMG010000026.1 Salmonella enterica strain PNUSAS354414 SAMN35674575-rid18339973.guided.18, whole genome shotgun sequence	8142..8579	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOGMG010000016.1 Salmonella enterica strain PNUSAS354414 SAMN35674575-rid18339973.denovo.16, whole genome shotgun sequence	14889..15749	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOGMG010000029.1 Salmonella enterica strain PNUSAS354414 SAMN35674575-rid18339973.guided.23, whole genome shotgun sequence	731..1591	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrS1	100	657/657	ABOGMG010000016.1 Salmonella enterica strain PNUSAS354414 SAMN35674575-rid18339973.denovo.16, whole genome shotgun sequence	21111..21767	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOGMG010000028.1 Salmonella enterica strain PNUSAS354414 SAMN35674575-rid18339973.guided.20, whole genome shotgun sequence	4631..5287	Ciprofloxacin	AB187515	tet(A)	99.92	1200/1200	ABOGMG010000016.1 Salmonella enterica strain PNUSAS354414 SAMN35674575-rid18339973.denovo.16, whole genome shotgun sequence	12568..13767	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOGMG010000029.1 Salmonella enterica strain PNUSAS354414 SAMN35674575-rid18339973.guided.23, whole genome shotgun sequence	2713..3912	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOGMG010000022.1 Salmonella enterica strain PNUSAS354414 SAMN35674575-rid18339973.denovo.26, whole genome shotgun sequence	1150..1280																																																						avrA	ABOGMG010000002.1	509606..510472	99.08	870	0						
GCA_032970825.1_PDT001772559.1_genomic.fna	Salmonella_enterica	0.5205	406.457 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		4	IncFIB(S),IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGMK010000001.1 Salmonella enterica strain PNUSAS354392 SAMN35674537-rid18339953.denovo.01, whole genome shotgun sequence	774552..774989	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGMK010000019.1 Salmonella enterica strain PNUSAS354392 SAMN35674537-rid18339953.denovo.20, whole genome shotgun sequence	10839..11675	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGMK010000019.1 Salmonella enterica strain PNUSAS354392 SAMN35674537-rid18339953.denovo.20, whole genome shotgun sequence	11675..12478	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOGMK010000031.1 Salmonella enterica strain PNUSAS354392 SAMN35674537-rid18339953.guided.25, whole genome shotgun sequence	4452..5288	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGMK010000031.1 Salmonella enterica strain PNUSAS354392 SAMN35674537-rid18339953.guided.25, whole genome shotgun sequence	3649..4452	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABOGMK010000032.1 Salmonella enterica strain PNUSAS354392 SAMN35674537-rid18339953.guided.27, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOGMK010000025.1 Salmonella enterica strain PNUSAS354392 SAMN35674537-rid18339953.denovo.30, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOGMK010000033.1 Salmonella enterica strain PNUSAS354392 SAMN35674537-rid18339953.guided.29, whole genome shotgun sequence	3944..4804	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOGMK010000019.1 Salmonella enterica strain PNUSAS354392 SAMN35674537-rid18339953.denovo.20, whole genome shotgun sequence	12539..13354	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOGMK010000031.1 Salmonella enterica strain PNUSAS354392 SAMN35674537-rid18339953.guided.25, whole genome shotgun sequence	2773..3588	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOGMK010000019.1 Salmonella enterica strain PNUSAS354392 SAMN35674537-rid18339953.denovo.20, whole genome shotgun sequence	16867..18066	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGMK010000034.1 Salmonella enterica strain PNUSAS354392 SAMN35674537-rid18339953.guided.31, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGMK010000021.1 Salmonella enterica strain PNUSAS354392 SAMN35674537-rid18339953.denovo.23, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOGMK010000022.1 Salmonella enterica strain PNUSAS354392 SAMN35674537-rid18339953.denovo.24, whole genome shotgun sequence	3389..3650		enterobacteriales	IncN	100	514 / 514	ABOGMK010000023.1 Salmonella enterica strain PNUSAS354392 SAMN35674537-rid18339953.denovo.26, whole genome shotgun sequence	896..1409		enterobacteriales	IncX1	98.66	374 / 374	ABOGMK010000015.1 Salmonella enterica strain PNUSAS354392 SAMN35674537-rid18339953.denovo.16, whole genome shotgun sequence	6057..6430																																		avrA	ABOGMK010000002.1	552981..553850	99.54	870	0						
GCA_032970845.1_PDT001772561.1_genomic.fna	Salmonella_enterica	0.5219	411.847 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGMH010000001.1 Salmonella enterica strain PNUSAS354390 SAMN35674534-rid18339773.denovo.01, whole genome shotgun sequence	684158..684595	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGMH010000024.1 Salmonella enterica strain PNUSAS354390 SAMN35674534-rid18339773.guided.16, whole genome shotgun sequence	9650..10087	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGMH010000002.1	606319..607188	99.77	870	0						
GCA_032970885.1_PDT001772560.1_genomic.fna	Salmonella_enterica	0.522	238.685 KB	8	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_547	2370	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_547	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGMI010000008.1 Salmonella enterica strain PNUSAS354395 SAMN35674551-rid18339963.denovo.08, whole genome shotgun sequence	92870..93307	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGMI010000046.1 Salmonella enterica strain PNUSAS354395 SAMN35674551-rid18339963.guided.31, whole genome shotgun sequence	8182..8619	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGMI010000011.1	163469..164338	99.195	870	0						
GCA_032970945.1_PDT001772556.1_genomic.fna	Salmonella_enterica	0.521	328.509 KB	6	aroC_22,dnaN_104,hemD_25,hisD_113,purE_12,sucA_83,thrA_4	308	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_25	hisD	100	100	hisD_113	purE	100	100	purE_12	sucA	100	100	sucA_83	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABOGMM010000001.1 Salmonella enterica strain PNUSAS354381 SAMN35674549-rid18339753.denovo.01, whole genome shotgun sequence	237959..238396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABOGMM010000038.1 Salmonella enterica strain PNUSAS354381 SAMN35674549-rid18339753.guided.22, whole genome shotgun sequence	8123..8560	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.44	534 / 534	ABOGMM010000017.1 Salmonella enterica strain PNUSAS354381 SAMN35674549-rid18339753.denovo.17, whole genome shotgun sequence	14982..15515																																																						avrA	ABOGMM010000002.1	133186..134055	99.655	870	0						
GCA_032970965.1_PDT001772557.1_genomic.fna	Salmonella_enterica	0.5212	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGML010000001.1 Salmonella enterica strain PNUSAS354386 SAMN35674578-rid18339943.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGML010000027.1 Salmonella enterica strain PNUSAS354386 SAMN35674578-rid18339943.guided.19, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGML010000017.1 Salmonella enterica strain PNUSAS354386 SAMN35674578-rid18339943.denovo.18, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOGML010000014.1 Salmonella enterica strain PNUSAS354386 SAMN35674578-rid18339943.denovo.14, whole genome shotgun sequence	37108..37369																																																avrA	ABOGML010000002.1	553181..554050	99.54	870	0						
GCA_032970985.1_PDT001772558.1_genomic.fna	Salmonella_enterica	0.5212	249.664 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGMJ010000002.1 Salmonella enterica strain PNUSAS354403 SAMN35674566-rid18339763.denovo.02, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGMJ010000038.1 Salmonella enterica strain PNUSAS354403 SAMN35674566-rid18339763.guided.33, whole genome shotgun sequence	2981..3418	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGMJ010000027.1 Salmonella enterica strain PNUSAS354403 SAMN35674566-rid18339763.denovo.27, whole genome shotgun sequence	6793..7435	enterobacteriales	IncFII(S)	100	262 / 262	ABOGMJ010000029.1 Salmonella enterica strain PNUSAS354403 SAMN35674566-rid18339763.denovo.30, whole genome shotgun sequence	3402..3663																																																avrA	ABOGMJ010000001.1	585343..586212	99.54	870	0						
GCA_032971025.1_PDT001772555.1_genomic.fna	Salmonella_enterica	0.5206	412.517 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGMN010000001.1 Salmonella enterica strain PNUSAS354396 SAMN35674563-rid18339933.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGMN010000027.1 Salmonella enterica strain PNUSAS354396 SAMN35674563-rid18339933.guided.18, whole genome shotgun sequence	6035..6472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGMN010000018.1 Salmonella enterica strain PNUSAS354396 SAMN35674563-rid18339933.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOGMN010000020.1 Salmonella enterica strain PNUSAS354396 SAMN35674563-rid18339933.denovo.22, whole genome shotgun sequence	3385..3646		enterobacteriales	IncX1	98.93	374 / 374	ABOGMN010000014.1 Salmonella enterica strain PNUSAS354396 SAMN35674563-rid18339933.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABOGMN010000002.1	553690..554559	99.54	870	0						
GCA_032971125.1_PDT001772554.1_genomic.fna	Salmonella_enterica	0.5217	319.855 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGMO010000001.1 Salmonella enterica strain PNUSAS354406 SAMN35674564-rid18339743.denovo.01, whole genome shotgun sequence	490013..490450	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGMO010000048.1 Salmonella enterica strain PNUSAS354406 SAMN35674564-rid18339743.guided.37, whole genome shotgun sequence	2687..3124	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOGMO010000027.1 Salmonella enterica strain PNUSAS354406 SAMN35674564-rid18339743.denovo.27, whole genome shotgun sequence	24661..25303	enterobacteriales	IncFII(S)	100	262 / 262	ABOGMO010000027.1 Salmonella enterica strain PNUSAS354406 SAMN35674564-rid18339743.denovo.27, whole genome shotgun sequence	9315..9576																																																avrA	ABOGMO010000003.1	174641..175510	99.77	870	0						
GCA_032971145.1_PDT001772552.1_genomic.fna	Salmonella_enterica	0.5212	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGMQ010000001.1 Salmonella enterica strain PNUSAS354382 SAMN35674548-rid18339723.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGMQ010000025.1 Salmonella enterica strain PNUSAS354382 SAMN35674548-rid18339723.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABOGMQ010000020.1 Salmonella enterica strain PNUSAS354382 SAMN35674548-rid18339723.denovo.23, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGMQ010000017.1 Salmonella enterica strain PNUSAS354382 SAMN35674548-rid18339723.denovo.18, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABOGMQ010000018.1 Salmonella enterica strain PNUSAS354382 SAMN35674548-rid18339723.denovo.21, whole genome shotgun sequence	3402..3663																																									avrA	ABOGMQ010000002.1	553660..554529	99.54	870	0						
GCA_032971165.1_PDT001772551.1_genomic.fna	Salmonella_enterica	0.5107	251.413 KB	8	aroC_29,dnaN_173,hemD_30,hisD_212,purE_21,sucA_145,thrA_132	574	48:i:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_173	hemD	100	100	hemD_30	hisD	100	100	hisD_212	purE	100	100	purE_21	sucA	100	100	sucA_145	thrA	100	100	thrA_132	48	i	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:i:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGMS010000008.1 Salmonella enterica strain PNUSAS354397 SAMN35674550-rid18339713.denovo.08, whole genome shotgun sequence	162565..163002	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGMS010000071.1 Salmonella enterica strain PNUSAS354397 SAMN35674550-rid18339713.guided.37, whole genome shotgun sequence	4620..5057	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGMS010000009.1	144706..145575	96.667	870	0						
GCA_032971215.1_PDT001772550.1_genomic.fna	Salmonella_enterica	0.5202	384.955 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pKPC-CAV1193	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGMR010000001.1 Salmonella enterica strain PNUSAS354405 SAMN35674543-rid18339923.denovo.01, whole genome shotgun sequence	414686..415123	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGMR010000026.1 Salmonella enterica strain PNUSAS354405 SAMN35674543-rid18339923.guided.20, whole genome shotgun sequence	8179..8616	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1193	98.2	612 / 612	ABOGMR010000016.1 Salmonella enterica strain PNUSAS354405 SAMN35674543-rid18339923.denovo.16, whole genome shotgun sequence	4792..5403																																																																	
GCA_032971245.1_PDT001772553.1_genomic.fna	Salmonella_enterica	0.5205	375.892 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGMP010000001.1 Salmonella enterica strain PNUSAS354412 SAMN35674565-rid18339733.denovo.01, whole genome shotgun sequence	774378..774815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGMP010000029.1 Salmonella enterica strain PNUSAS354412 SAMN35674565-rid18339733.guided.24, whole genome shotgun sequence	2..439	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGMP010000019.1 Salmonella enterica strain PNUSAS354412 SAMN35674565-rid18339733.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOGMP010000020.1 Salmonella enterica strain PNUSAS354412 SAMN35674565-rid18339733.denovo.22, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.93	374 / 374	ABOGMP010000014.1 Salmonella enterica strain PNUSAS354412 SAMN35674565-rid18339733.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABOGMP010000002.1	553682..554551	99.54	870	0						
GCA_032971285.1_PDT001772549.1_genomic.fna	Salmonella_enterica	0.5186	115.3 KB	13	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_19,thrA_1	679	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGMU010000012.1 Salmonella enterica strain PNUSAS354383 SAMN35674553-rid18339913.denovo.12, whole genome shotgun sequence	59254..59691	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGMU010000098.1 Salmonella enterica strain PNUSAS354383 SAMN35674553-rid18339913.guided.37, whole genome shotgun sequence	21236..21673	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pN55391)	98.75	560 / 560	ABOGMU010000014.1 Salmonella enterica strain PNUSAS354383 SAMN35674553-rid18339913.denovo.14, whole genome shotgun sequence	54743..55302																																																						avrA	ABOGMU010000007.1	152858..153724	98.966	870	0						
GCA_032971325.1_PDT001772547.1_genomic.fna	Salmonella_enterica	0.5211	335.803 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOGMV010000001.1 Salmonella enterica strain PNUSAS354387 SAMN35674546-rid18339903.denovo.01, whole genome shotgun sequence	394607..395044	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOGMV010000038.1 Salmonella enterica strain PNUSAS354387 SAMN35674546-rid18339903.guided.22, whole genome shotgun sequence	2960..3397	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOGMV010000023.1 Salmonella enterica strain PNUSAS354387 SAMN35674546-rid18339903.denovo.26, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABOGMV010000026.1 Salmonella enterica strain PNUSAS354387 SAMN35674546-rid18339903.denovo.29, whole genome shotgun sequence	2528..2639																																																avrA	ABOGMV010000005.1	174434..175302	99.425	870	0						
GCA_032971345.1_PDT001772548.1_genomic.fna	Salmonella_enterica	0.522	411.847 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGMT010000001.1 Salmonella enterica strain PNUSAS354388 SAMN35674547-rid18339703.denovo.01, whole genome shotgun sequence	999913..1000350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGMT010000024.1 Salmonella enterica strain PNUSAS354388 SAMN35674547-rid18339703.guided.19, whole genome shotgun sequence	22636..23073	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGMT010000001.1	563585..564454	99.77	870	0						
GCA_032971405.1_PDT001772544.1_genomic.fna	Salmonella_enterica	0.5218	273.331 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGMY010000001.1 Salmonella enterica strain PNUSAS354404 SAMN35674539-rid18339883.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGMY010000047.1 Salmonella enterica strain PNUSAS354404 SAMN35674539-rid18339883.guided.31, whole genome shotgun sequence	1591..2028	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOGMY010000024.1 Salmonella enterica strain PNUSAS354404 SAMN35674539-rid18339883.denovo.24, whole genome shotgun sequence	44728..45370	enterobacteriales	IncFII(S)	100	262 / 262	ABOGMY010000024.1 Salmonella enterica strain PNUSAS354404 SAMN35674539-rid18339883.denovo.24, whole genome shotgun sequence	29382..29643																																																avrA	ABOGMY010000003.1	209589..210457	100	869	0						
GCA_032971425.1_PDT001772546.1_genomic.fna	Salmonella_enterica	0.5208	271.79 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGMW010000001.1 Salmonella enterica strain PNUSAS354380 SAMN35674544-rid18339693.denovo.01, whole genome shotgun sequence	486073..486510	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGMW010000045.1 Salmonella enterica strain PNUSAS354380 SAMN35674544-rid18339693.guided.31, whole genome shotgun sequence	8799..9236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOGMW010000015.1	99418..100287	99.885	870	0						
GCA_032971485.1_PDT001772543.1_genomic.fna	Salmonella_enterica	0.5216	225.541 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncB/O/K/Z,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGMZ010000002.1 Salmonella enterica strain PNUSAS354401 SAMN35674538-rid18339683.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGMZ010000048.1 Salmonella enterica strain PNUSAS354401 SAMN35674538-rid18339683.guided.38, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncB/O/K/Z	94.74	152 / 151	ABOGMZ010000018.1 Salmonella enterica strain PNUSAS354401 SAMN35674538-rid18339683.denovo.18, whole genome shotgun sequence	74002..74152	enterobacteriales	IncFIB(S)	100	643 / 643	ABOGMZ010000024.1 Salmonella enterica strain PNUSAS354401 SAMN35674538-rid18339683.denovo.24, whole genome shotgun sequence	44700..45342		enterobacteriales	IncFII(S)	100	262 / 262	ABOGMZ010000024.1 Salmonella enterica strain PNUSAS354401 SAMN35674538-rid18339683.denovo.24, whole genome shotgun sequence	29354..29615																																									avrA	ABOGMZ010000001.1	479190..480058	100	869	0						
GCA_032971525.1_PDT001772540.1_genomic.fna	Salmonella_enterica	0.5212	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGNB010000001.1 Salmonella enterica strain PNUSAS353932 SAMN35673862-rid18339113.denovo.01, whole genome shotgun sequence	774368..774805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGNB010000027.1 Salmonella enterica strain PNUSAS353932 SAMN35673862-rid18339113.guided.20, whole genome shotgun sequence	1753..2190	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGNB010000019.1 Salmonella enterica strain PNUSAS353932 SAMN35673862-rid18339113.denovo.21, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOGNB010000020.1 Salmonella enterica strain PNUSAS353932 SAMN35673862-rid18339113.denovo.23, whole genome shotgun sequence	3416..3677																																																avrA	ABOGNB010000002.1	553648..554517	99.54	870	0						
GCA_032971545.1_PDT001772545.1_genomic.fna	Salmonella_enterica	0.5212	207.445 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGMX010000001.1 Salmonella enterica strain PNUSAS354376 SAMN35674536-rid18339893.denovo.01, whole genome shotgun sequence	115023..115460	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGMX010000057.1 Salmonella enterica strain PNUSAS354376 SAMN35674536-rid18339893.guided.39, whole genome shotgun sequence	7750..8187	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOGMX010000007.1	174641..175509	99.77	870	0						
GCA_032971565.1_PDT001772542.1_genomic.fna	Salmonella_enterica	0.5225	249.82 KB	6	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,IncC	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGNA010000001.1 Salmonella enterica strain PNUSAS354410 SAMN35674535-rid18339673.denovo.01, whole genome shotgun sequence	154015..154452	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGNA010000038.1 Salmonella enterica strain PNUSAS354410 SAMN35674535-rid18339673.guided.28, whole genome shotgun sequence	5674..6111	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	ABOGNA010000029.1 Salmonella enterica strain PNUSAS354410 SAMN35674535-rid18339673.denovo.32, whole genome shotgun sequence	3345..3457	enterobacteriales	IncC	100	417 / 417	ABOGNA010000015.1 Salmonella enterica strain PNUSAS354410 SAMN35674535-rid18339673.denovo.15, whole genome shotgun sequence	73546..73962																																																											
GCA_032971585.1_PDT001772539.1_genomic.fna	Salmonella_enterica	0.521	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGND010000001.1 Salmonella enterica strain PNUSAS353935 SAMN35673853-rid18337463.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGND010000021.1 Salmonella enterica strain PNUSAS353935 SAMN35673853-rid18337463.guided.12, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGND010000015.1 Salmonella enterica strain PNUSAS353935 SAMN35673853-rid18337463.denovo.18, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOGND010000012.1 Salmonella enterica strain PNUSAS353935 SAMN35673853-rid18337463.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABOGND010000002.1	553636..554505	99.54	870	0						
GCA_032971605.1_PDT001772538.1_genomic.fna	Salmonella_enterica	0.5212	391.893 KB	4	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	IncFIB(pHCM2)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGNE010000001.1 Salmonella enterica strain PNUSAS353943 SAMN35673855-rid18334563.denovo.01, whole genome shotgun sequence	995536..995973	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGNE010000026.1 Salmonella enterica strain PNUSAS353943 SAMN35673855-rid18334563.guided.20, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pHCM2)	100	875 / 875	ABOGNE010000012.1 Salmonella enterica strain PNUSAS353943 SAMN35673855-rid18334563.denovo.12, whole genome shotgun sequence	23493..24367																																																																	
GCA_032971625.1_PDT001772537.1_genomic.fna	Salmonella_enterica	0.5202	271.783 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGNF010000001.1 Salmonella enterica strain PNUSAS353945 SAMN35673858-rid18337453.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOGNF010000032.1 Salmonella enterica strain PNUSAS353945 SAMN35673858-rid18337453.denovo.36, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(6)-Id	100	837/837	ABOGNF010000036.1 Salmonella enterica strain PNUSAS353945 SAMN35673858-rid18337453.denovo.42, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGNF010000036.1 Salmonella enterica strain PNUSAS353945 SAMN35673858-rid18337453.denovo.42, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOGNF010000047.1 Salmonella enterica strain PNUSAS353945 SAMN35673858-rid18337453.guided.27, whole genome shotgun sequence	16101..16538	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOGNF010000051.1 Salmonella enterica strain PNUSAS353945 SAMN35673858-rid18337453.guided.37, whole genome shotgun sequence	1840..2655	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(6)-Id	100	837/837	ABOGNF010000052.1 Salmonella enterica strain PNUSAS353945 SAMN35673858-rid18337453.guided.41, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGNF010000052.1 Salmonella enterica strain PNUSAS353945 SAMN35673858-rid18337453.guided.41, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOGNF010000039.1 Salmonella enterica strain PNUSAS353945 SAMN35673858-rid18337453.denovo.46, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOGNF010000053.1 Salmonella enterica strain PNUSAS353945 SAMN35673858-rid18337453.guided.45, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOGNF010000036.1 Salmonella enterica strain PNUSAS353945 SAMN35673858-rid18337453.denovo.42, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOGNF010000052.1 Salmonella enterica strain PNUSAS353945 SAMN35673858-rid18337453.guided.41, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOGNF010000030.1 Salmonella enterica strain PNUSAS353945 SAMN35673858-rid18337453.denovo.33, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGNF010000050.1 Salmonella enterica strain PNUSAS353945 SAMN35673858-rid18337453.guided.34, whole genome shotgun sequence	7025..8230	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncX1	98.66	374 / 374	ABOGNF010000027.1 Salmonella enterica strain PNUSAS353945 SAMN35673858-rid18337453.denovo.28, whole genome shotgun sequence	6956..7329																																																						avrA	ABOGNF010000002.1	508759..509628	99.885	870	0						
GCA_032971645.1_PDT001772536.1_genomic.fna	Salmonella_enterica	0.5209	489.838 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII,IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGNG010000001.1 Salmonella enterica strain PNUSAS353946 SAMN35673857-rid18335943.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGNG010000033.1 Salmonella enterica strain PNUSAS353946 SAMN35673857-rid18335943.guided.18, whole genome shotgun sequence	24577..25014	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGNG010000019.1 Salmonella enterica strain PNUSAS353946 SAMN35673857-rid18335943.denovo.21, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII	100	261 / 261	ABOGNG010000022.1 Salmonella enterica strain PNUSAS353946 SAMN35673857-rid18335943.denovo.25, whole genome shotgun sequence	1031..1291		enterobacteriales	IncFII(S)	100	262 / 262	ABOGNG010000014.1 Salmonella enterica strain PNUSAS353946 SAMN35673857-rid18335943.denovo.15, whole genome shotgun sequence	4416..4677																																									avrA	ABOGNG010000002.1	552746..553615	99.54	870	0						
GCA_032971665.1_PDT001772534.1_genomic.fna	Salmonella_enterica	0.5217	269.597 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGNI010000001.1 Salmonella enterica strain PNUSAS353936 SAMN35673852-rid18337443.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGNI010000024.1 Salmonella enterica strain PNUSAS353936 SAMN35673852-rid18337443.denovo.24, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGNI010000024.1 Salmonella enterica strain PNUSAS353936 SAMN35673852-rid18337443.denovo.24, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOGNI010000046.1 Salmonella enterica strain PNUSAS353936 SAMN35673852-rid18337443.guided.30, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGNI010000046.1 Salmonella enterica strain PNUSAS353936 SAMN35673852-rid18337443.guided.30, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOGNI010000048.1 Salmonella enterica strain PNUSAS353936 SAMN35673852-rid18337443.guided.35, whole genome shotgun sequence	7868..8305	Amikacin, Tobramycin	NC_003197	blaCTX-M-65	100	876/876	ABOGNI010000035.1 Salmonella enterica strain PNUSAS353936 SAMN35673852-rid18337443.denovo.39, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOGNI010000050.1 Salmonella enterica strain PNUSAS353936 SAMN35673852-rid18337443.guided.40, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABOGNI010000024.1 Salmonella enterica strain PNUSAS353936 SAMN35673852-rid18337443.denovo.24, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGNI010000046.1 Salmonella enterica strain PNUSAS353936 SAMN35673852-rid18337443.guided.30, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOGNI010000024.1 Salmonella enterica strain PNUSAS353936 SAMN35673852-rid18337443.denovo.24, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGNI010000046.1 Salmonella enterica strain PNUSAS353936 SAMN35673852-rid18337443.guided.30, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGNI010000029.1 Salmonella enterica strain PNUSAS353936 SAMN35673852-rid18337443.denovo.29, whole genome shotgun sequence	8576..9135																																																						avrA	ABOGNI010000002.1	149924..150793	99.655	870	0						
GCA_032971685.1_PDT001772535.1_genomic.fna	Salmonella_enterica	0.5211	270.404 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGNH010000013.1 Salmonella enterica strain PNUSAS353944 SAMN35673859-rid18339103.denovo.13, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGNH010000045.1 Salmonella enterica strain PNUSAS353944 SAMN35673859-rid18339103.guided.32, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOGNH010000020.1 Salmonella enterica strain PNUSAS353944 SAMN35673859-rid18339103.denovo.20, whole genome shotgun sequence	34957..35490																																																						avrA	ABOGNH010000001.1	188265..189131	98.966	870	0						
GCA_032971705.1_PDT001772530.1_genomic.fna	Salmonella_enterica	0.5211	225.563 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGNM010000001.1 Salmonella enterica strain PNUSAS353934 SAMN35673851-rid18339093.denovo.01, whole genome shotgun sequence	458978..459415	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGNM010000046.1 Salmonella enterica strain PNUSAS353934 SAMN35673851-rid18339093.guided.25, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOGNM010000024.1 Salmonella enterica strain PNUSAS353934 SAMN35673851-rid18339093.denovo.24, whole genome shotgun sequence	44793..45435	enterobacteriales	IncFII(S)	100	262 / 262	ABOGNM010000024.1 Salmonella enterica strain PNUSAS353934 SAMN35673851-rid18339093.denovo.24, whole genome shotgun sequence	29447..29708																																																avrA	ABOGNM010000002.1	209366..210235	99.885	870	0						
GCA_032971725.1_PDT001772529.1_genomic.fna	Salmonella_enterica	0.5212	439.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGNN010000001.1 Salmonella enterica strain PNUSAS353942 SAMN35673860-rid18337423.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGNN010000022.1 Salmonella enterica strain PNUSAS353942 SAMN35673860-rid18337423.guided.17, whole genome shotgun sequence	20586..21023	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABOGNN010000003.1	175187..176056	99.54	870	0						
GCA_032971745.1_PDT001772533.1_genomic.fna	Salmonella_enterica	0.5205	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),pXuzhou21	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGNK010000001.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.denovo.01, whole genome shotgun sequence	437531..437968	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGNK010000026.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.denovo.28, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGNK010000026.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.denovo.28, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOGNK010000040.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.denovo.47, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOGNK010000040.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.denovo.47, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOGNK010000052.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.guided.14, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGNK010000054.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.guided.36, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGNK010000054.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.guided.36, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOGNK010000058.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.guided.46, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOGNK010000058.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.guided.46, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOGNK010000037.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.denovo.43, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOGNK010000057.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.guided.42, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOGNK010000026.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.denovo.28, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGNK010000054.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.guided.36, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOGNK010000026.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.denovo.28, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGNK010000056.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.guided.39, whole genome shotgun sequence	4358..5557	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGNK010000030.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.denovo.32, whole genome shotgun sequence	9109..9668	enterobacteriales	pXuzhou21	99.86	720 / 720	ABOGNK010000025.1 Salmonella enterica strain PNUSAS353937 SAMN35673854-rid18335753.denovo.27, whole genome shotgun sequence	23692..24411																																																avrA	ABOGNK010000002.1	149828..150697	99.655	870	0						
GCA_032971765.1_PDT001772532.1_genomic.fna	Salmonella_enterica	0.5221	437.192 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGNJ010000001.1 Salmonella enterica strain PNUSAS353933 SAMN35673847-rid18337433.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGNJ010000032.1 Salmonella enterica strain PNUSAS353933 SAMN35673847-rid18337433.guided.16, whole genome shotgun sequence	36793..37230	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOGNJ010000022.1 Salmonella enterica strain PNUSAS353933 SAMN35673847-rid18337433.denovo.25, whole genome shotgun sequence	547..675																																																						avrA	ABOGNJ010000007.1	147026..147895	98.966	870	0						
GCA_032971785.1_PDT001951959.1_genomic.fna	Salmonella_enterica	0.5217	307.169 KB	5	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOGNO010000001.1 Salmonella enterica strain PNUSAS388827 SAMN37926514-rid19937973.denovo.01, whole genome shotgun sequence	346964..347401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOGNO010000029.1 Salmonella enterica strain PNUSAS388827 SAMN37926514-rid19937973.guided.22, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGNO010000006.1	150745..151614	99.425	870	0						
GCA_032971805.1_PDT001772531.1_genomic.fna	Salmonella_enterica	0.5202	406.326 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	4	ColpVC,IncFIB(S),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGNL010000001.1 Salmonella enterica strain PNUSAS353941 SAMN35673856-rid18335933.denovo.01, whole genome shotgun sequence	176092..176529	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGNL010000029.1 Salmonella enterica strain PNUSAS353941 SAMN35673856-rid18335933.guided.18, whole genome shotgun sequence	36822..37259	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABOGNL010000025.1 Salmonella enterica strain PNUSAS353941 SAMN35673856-rid18335933.denovo.28, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGNL010000021.1 Salmonella enterica strain PNUSAS353941 SAMN35673856-rid18335933.denovo.23, whole genome shotgun sequence	6818..7460		enterobacteriales	IncFII(S)	100	262 / 262	ABOGNL010000022.1 Salmonella enterica strain PNUSAS353941 SAMN35673856-rid18335933.denovo.25, whole genome shotgun sequence	3446..3707		enterobacteriales	IncI2(Delta)	97.83	322 / 316	ABOGNL010000017.1 Salmonella enterica strain PNUSAS353941 SAMN35673856-rid18335933.denovo.17, whole genome shotgun sequence	56941..57262																																		avrA	ABOGNL010000002.1	553636..554505	99.54	870	0						
GCA_032971825.1_PDT001951957.1_genomic.fna	Salmonella_enterica	0.5213	405.566 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGNP010000001.1 Salmonella enterica strain PNUSAS394218 SAMN37926064-rid19937953.denovo.01, whole genome shotgun sequence	414841..415278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGNP010000031.1 Salmonella enterica strain PNUSAS394218 SAMN37926064-rid19937953.guided.18, whole genome shotgun sequence	2876..3313	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGNP010000002.1	514960..515828	99.195	870	0						
GCA_032971845.1_PDT001951956.1_genomic.fna	Salmonella_enterica	0.5214	729.696 KB	2	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGNQ010000001.1 Salmonella enterica strain PNUSAS388819 SAMN37926519-rid19937943.denovo.01, whole genome shotgun sequence	1035731..1036168	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGNQ010000023.1 Salmonella enterica strain PNUSAS388819 SAMN37926519-rid19937943.guided.14, whole genome shotgun sequence	16715..17152	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGNQ010000016.1 Salmonella enterica strain PNUSAS388819 SAMN37926519-rid19937943.denovo.18, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOGNQ010000017.1 Salmonella enterica strain PNUSAS388819 SAMN37926519-rid19937943.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABOGNQ010000002.1	553631..554500	99.54	870	0						
GCA_032971865.1_PDT001951949.1_genomic.fna	Salmonella_enterica	0.5219	453.512 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGNR010000001.1 Salmonella enterica strain PNUSAS388817 SAMN37926512-rid19937913.denovo.01, whole genome shotgun sequence	181497..181934	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGNR010000023.1 Salmonella enterica strain PNUSAS388817 SAMN37926512-rid19937913.guided.21, whole genome shotgun sequence	2134..2571	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGNR010000003.1	563798..564667	99.77	870	0						
GCA_032971905.1_PDT001951948.1_genomic.fna	Salmonella_enterica	0.5215	278.672 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul2,tet(B),tet(B)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGNS010000001.1 Salmonella enterica strain PNUSAS392086 SAMN37926510-rid19937903.denovo.01, whole genome shotgun sequence	570056..570493	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGNS010000036.1 Salmonella enterica strain PNUSAS392086 SAMN37926510-rid19937903.denovo.41, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGNS010000036.1 Salmonella enterica strain PNUSAS392086 SAMN37926510-rid19937903.denovo.41, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOGNS010000046.1 Salmonella enterica strain PNUSAS392086 SAMN37926510-rid19937903.guided.32, whole genome shotgun sequence	2888..3325	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGNS010000049.1 Salmonella enterica strain PNUSAS392086 SAMN37926510-rid19937903.guided.40, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGNS010000049.1 Salmonella enterica strain PNUSAS392086 SAMN37926510-rid19937903.guided.40, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOGNS010000039.1 Salmonella enterica strain PNUSAS392086 SAMN37926510-rid19937903.denovo.46, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOGNS010000051.1 Salmonella enterica strain PNUSAS392086 SAMN37926510-rid19937903.guided.45, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABOGNS010000038.1 Salmonella enterica strain PNUSAS392086 SAMN37926510-rid19937903.denovo.43, whole genome shotgun sequence	2136..2780	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOGNS010000050.1 Salmonella enterica strain PNUSAS392086 SAMN37926510-rid19937903.guided.44, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABOGNS010000036.1 Salmonella enterica strain PNUSAS392086 SAMN37926510-rid19937903.denovo.41, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOGNS010000049.1 Salmonella enterica strain PNUSAS392086 SAMN37926510-rid19937903.guided.40, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOGNS010000030.1 Salmonella enterica strain PNUSAS392086 SAMN37926510-rid19937903.denovo.31, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGNS010000045.1 Salmonella enterica strain PNUSAS392086 SAMN37926510-rid19937903.guided.30, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	100	131 / 131	ABOGNS010000038.1 Salmonella enterica strain PNUSAS392086 SAMN37926510-rid19937903.denovo.43, whole genome shotgun sequence	1480..1610																																																						avrA	ABOGNS010000002.1	540741..541610	99.885	870	0						
GCA_032972665.1_PDT001772527.1_genomic.fna	Salmonella_enterica	0.5201	707.035 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX3(pEC14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGNU010000001.1 Salmonella enterica strain PNUSAS353939 SAMN35673848-rid18337413.denovo.01, whole genome shotgun sequence	642173..642610	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGNU010000018.1 Salmonella enterica strain PNUSAS353939 SAMN35673848-rid18337413.guided.09, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX3(pEC14)	93.58	374 / 374	ABOGNU010000009.1 Salmonella enterica strain PNUSAS353939 SAMN35673848-rid18337413.denovo.10, whole genome shotgun sequence	35268..35641																																																																	
GCA_032972705.1_PDT001772528.1_genomic.fna	Salmonella_enterica	0.521	337.859 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGNT010000001.1 Salmonella enterica strain PNUSAS353940 SAMN35673850-rid18334553.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGNT010000026.1 Salmonella enterica strain PNUSAS353940 SAMN35673850-rid18334553.guided.19, whole genome shotgun sequence	8784..9221	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032972725.1_PDT001772525.1_genomic.fna	Salmonella_enterica	0.5213	490.138 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGNW010000001.1 Salmonella enterica strain PNUSAS354316 SAMN35667775-rid18331053.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGNW010000028.1 Salmonella enterica strain PNUSAS354316 SAMN35667775-rid18331053.guided.20, whole genome shotgun sequence	2153..2590	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGNW010000016.1 Salmonella enterica strain PNUSAS354316 SAMN35667775-rid18331053.denovo.16, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABOGNW010000017.1 Salmonella enterica strain PNUSAS354316 SAMN35667775-rid18331053.denovo.19, whole genome shotgun sequence	3396..3657																																																avrA	ABOGNW010000002.1	585293..586162	99.54	870	0						
GCA_032972745.1_PDT001772521.1_genomic.fna	Salmonella_enterica	0.5214	171.983 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGNY010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322493 SAMN35667791-rid18337343.denovo.01, whole genome shotgun sequence	207037..207474	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGNY010000070.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322493 SAMN35667791-rid18337343.guided.49, whole genome shotgun sequence	2238..2675	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOGNY010000032.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322493 SAMN35667791-rid18337343.denovo.32, whole genome shotgun sequence	44730..45372	enterobacteriales	IncFII(S)	100	262 / 262	ABOGNY010000032.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322493 SAMN35667791-rid18337343.denovo.32, whole genome shotgun sequence	29384..29645																																																avrA	ABOGNY010000002.1	123479..124348	99.885	870	0						
GCA_032972765.1_PDT001772523.1_genomic.fna	Salmonella_enterica	0.5211	262.883 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_105	3631	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_105	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGNX010000001.1 Salmonella enterica strain PNUSAS354319 SAMN35667784-rid18335743.denovo.01, whole genome shotgun sequence	23479..23916	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGNX010000057.1 Salmonella enterica strain PNUSAS354319 SAMN35667784-rid18335743.guided.35, whole genome shotgun sequence	17337..17774	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOGNX010000033.1 Salmonella enterica strain PNUSAS354319 SAMN35667784-rid18335743.denovo.33, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABOGNX010000033.1 Salmonella enterica strain PNUSAS354319 SAMN35667784-rid18335743.denovo.33, whole genome shotgun sequence	9325..9586		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGNX010000019.1 Salmonella enterica strain PNUSAS354319 SAMN35667784-rid18335743.denovo.19, whole genome shotgun sequence	65947..66088																																									avrA	ABOGNX010000006.1	97941..98810	99.885	870	0						
GCA_032972785.1_PDT001951965.1_genomic.fna	Salmonella_enterica	0.521	257.297 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGNZ010000001.1 Salmonella enterica strain PNUSAS391766 SAMN37926523-rid19938913.denovo.01, whole genome shotgun sequence	458980..459417	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGNZ010000040.1 Salmonella enterica strain PNUSAS391766 SAMN37926523-rid19938913.denovo.44, whole genome shotgun sequence	6..842	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGNZ010000040.1 Salmonella enterica strain PNUSAS391766 SAMN37926523-rid19938913.denovo.44, whole genome shotgun sequence	842..1645	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOGNZ010000051.1 Salmonella enterica strain PNUSAS391766 SAMN37926523-rid19938913.guided.40, whole genome shotgun sequence	9415..9852	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGNZ010000052.1 Salmonella enterica strain PNUSAS391766 SAMN37926523-rid19938913.guided.43, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGNZ010000052.1 Salmonella enterica strain PNUSAS391766 SAMN37926523-rid19938913.guided.43, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOGNZ010000042.1 Salmonella enterica strain PNUSAS391766 SAMN37926523-rid19938913.denovo.48, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOGNZ010000054.1 Salmonella enterica strain PNUSAS391766 SAMN37926523-rid19938913.guided.47, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOGNZ010000040.1 Salmonella enterica strain PNUSAS391766 SAMN37926523-rid19938913.denovo.44, whole genome shotgun sequence	1706..2521	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOGNZ010000052.1 Salmonella enterica strain PNUSAS391766 SAMN37926523-rid19938913.guided.43, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOGNZ010000033.1 Salmonella enterica strain PNUSAS391766 SAMN37926523-rid19938913.denovo.34, whole genome shotgun sequence	10138..11343	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGNZ010000050.1 Salmonella enterica strain PNUSAS391766 SAMN37926523-rid19938913.guided.37, whole genome shotgun sequence	7345..8550	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABOGNZ010000011.1	93863..94732	99.885	870	0						
GCA_032972805.1_PDT001772526.1_genomic.fna	Salmonella_enterica	0.5211	489.824 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGNV010000001.1 Salmonella enterica strain PNUSAS353938 SAMN35673849-rid18335923.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGNV010000026.1 Salmonella enterica strain PNUSAS353938 SAMN35673849-rid18335923.guided.19, whole genome shotgun sequence	20601..21038	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGNV010000018.1 Salmonella enterica strain PNUSAS353938 SAMN35673849-rid18335923.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOGNV010000015.1 Salmonella enterica strain PNUSAS353938 SAMN35673849-rid18335923.denovo.16, whole genome shotgun sequence	37108..37369																																																avrA	ABOGNV010000002.1	553636..554505	99.54	870	0						
GCA_032972825.1_PDT001951960.1_genomic.fna	Salmonella_enterica	0.5218	466.709 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aac(6')-Iaa,aadA2b,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOGOB010000001.1 Salmonella enterica strain PNUSAS391208 SAMN37926521-rid19938893.denovo.01, whole genome shotgun sequence	172254..172691	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOGOB010000034.1 Salmonella enterica strain PNUSAS391208 SAMN37926521-rid19938893.guided.15, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOGOB010000038.1 Salmonella enterica strain PNUSAS391208 SAMN37926521-rid19938893.guided.30, whole genome shotgun sequence	3160..3939	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOGOB010000038.1 Salmonella enterica strain PNUSAS391208 SAMN37926521-rid19938893.guided.30, whole genome shotgun sequence	2164..3030	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOGOB010000019.1 Salmonella enterica strain PNUSAS391208 SAMN37926521-rid19938893.denovo.21, whole genome shotgun sequence	10066..10971	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOGOB010000039.1 Salmonella enterica strain PNUSAS391208 SAMN37926521-rid19938893.guided.31, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	97.82	1007/1215	ABOGOB010000025.1 Salmonella enterica strain PNUSAS391208 SAMN37926521-rid19938893.denovo.28, whole genome shotgun sequence	3278..4284	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOGOB010000037.1 Salmonella enterica strain PNUSAS391208 SAMN37926521-rid19938893.guided.29, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOGOB010000038.1 Salmonella enterica strain PNUSAS391208 SAMN37926521-rid19938893.guided.30, whole genome shotgun sequence	1248..1904	Ciprofloxacin	AY070235	sul1	100	840/840	ABOGOB010000019.1 Salmonella enterica strain PNUSAS391208 SAMN37926521-rid19938893.denovo.21, whole genome shotgun sequence	3916..4755	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGOB010000042.1 Salmonella enterica strain PNUSAS391208 SAMN37926521-rid19938893.guided.37, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1240/1275	ABOGOB010000019.1 Salmonella enterica strain PNUSAS391208 SAMN37926521-rid19938893.denovo.21, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOGOB010000040.1 Salmonella enterica strain PNUSAS391208 SAMN37926521-rid19938893.guided.34, whole genome shotgun sequence	627..1901	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOGOB010000019.1 Salmonella enterica strain PNUSAS391208 SAMN37926521-rid19938893.denovo.21, whole genome shotgun sequence	2398..2871	Trimethoprim	X00926	dfrA1	100	474/474	ABOGOB010000041.1 Salmonella enterica strain PNUSAS391208 SAMN37926521-rid19938893.guided.35, whole genome shotgun sequence	531..1004	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																															parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOGOB010000022.1 Salmonella enterica strain PNUSAS391208 SAMN37926521-rid19938893.denovo.25, whole genome shotgun sequence	580..830																																																						avrA	ABOGOB010000002.1	553474..554343	99.77	870	0						
GCA_032972845.1_PDT001951958.1_genomic.fna	Salmonella_enterica	0.5209	394.33 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGOA010000001.1 Salmonella enterica strain PNUSAS388826 SAMN37926515-rid19937963.denovo.01, whole genome shotgun sequence	478320..478757	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGOA010000033.1 Salmonella enterica strain PNUSAS388826 SAMN37926515-rid19937963.guided.18, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGOA010000002.1	145283..146152	99.31	870	0						
GCA_032972865.1_PDT001951951.1_genomic.fna	Salmonella_enterica	0.5223	443.522 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGOE010000001.1 Salmonella enterica strain PNUSAS394210 SAMN37926067-rid19938863.denovo.01, whole genome shotgun sequence	790286..790723	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGOE010000027.1 Salmonella enterica strain PNUSAS394210 SAMN37926067-rid19938863.guided.19, whole genome shotgun sequence	18053..18490	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGOE010000002.1	129887..130756	98.966	870	0						
GCA_032972885.1_PDT001951950.1_genomic.fna	Salmonella_enterica	0.5206	394.336 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGOG010000001.1 Salmonella enterica strain PNUSAS391207 SAMN37926511-rid19938853.denovo.01, whole genome shotgun sequence	482799..483236	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGOG010000024.1 Salmonella enterica strain PNUSAS391207 SAMN37926511-rid19938853.guided.12, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGOG010000002.1	145172..146041	99.31	870	0						
GCA_032972925.1_PDT001951947.1_genomic.fna	Salmonella_enterica	0.5213	490.695 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOGOF010000001.1 Salmonella enterica strain PNUSAS394211 SAMN37926073-rid19937893.denovo.01, whole genome shotgun sequence	984795..985232	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOGOF010000021.1 Salmonella enterica strain PNUSAS394211 SAMN37926073-rid19937893.guided.18, whole genome shotgun sequence	4038..4475	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGOF010000001.1	544607..545475	99.425	870	0						
GCA_032972945.1_PDT001951955.1_genomic.fna	Salmonella_enterica	0.5204	394.52 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGOC010000001.1 Salmonella enterica strain PNUSAS391765 SAMN37926509-rid19938883.denovo.01, whole genome shotgun sequence	477889..478326	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGOC010000034.1 Salmonella enterica strain PNUSAS391765 SAMN37926509-rid19938883.guided.17, whole genome shotgun sequence	8072..8509	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGOC010000013.1 Salmonella enterica strain PNUSAS391765 SAMN37926509-rid19938883.denovo.13, whole genome shotgun sequence	32299..32440																																																						avrA	ABOGOC010000002.1	145182..146051	99.31	870	0						
GCA_032972975.1_PDT001951952.1_genomic.fna	Salmonella_enterica	0.5205	394.345 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGOD010000001.1 Salmonella enterica strain PNUSAS391764 SAMN37926513-rid19937923.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGOD010000033.1 Salmonella enterica strain PNUSAS391764 SAMN37926513-rid19937923.guided.22, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGOD010000012.1 Salmonella enterica strain PNUSAS391764 SAMN37926513-rid19937923.denovo.12, whole genome shotgun sequence	74193..74334																																																						avrA	ABOGOD010000002.1	145047..145916	99.31	870	0						
GCA_032973805.1_PDT001951967.1_genomic.fna	Salmonella_enterica	0.5197	282.835 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		2	Col(pHAD28),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGOH010000003.1 Salmonella enterica strain PNUSAS388816 SAMN37926518-rid19938023.denovo.03, whole genome shotgun sequence	113116..113553	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGOH010000039.1 Salmonella enterica strain PNUSAS388816 SAMN37926518-rid19938023.denovo.43, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGOH010000039.1 Salmonella enterica strain PNUSAS388816 SAMN37926518-rid19938023.denovo.43, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOGOH010000059.1 Salmonella enterica strain PNUSAS388816 SAMN37926518-rid19938023.guided.32, whole genome shotgun sequence	30285..30722	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGOH010000062.1 Salmonella enterica strain PNUSAS388816 SAMN37926518-rid19938023.guided.44, whole genome shotgun sequence	3488..4324	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGOH010000062.1 Salmonella enterica strain PNUSAS388816 SAMN37926518-rid19938023.guided.44, whole genome shotgun sequence	2685..3488	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOGOH010000045.1 Salmonella enterica strain PNUSAS388816 SAMN37926518-rid19938023.denovo.51, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOGOH010000063.1 Salmonella enterica strain PNUSAS388816 SAMN37926518-rid19938023.guided.50, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOGOH010000039.1 Salmonella enterica strain PNUSAS388816 SAMN37926518-rid19938023.denovo.43, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOGOH010000062.1 Salmonella enterica strain PNUSAS388816 SAMN37926518-rid19938023.guided.44, whole genome shotgun sequence	1809..2624	Sulfamethoxazole	HQ840942	tet(B)	99.92	1206/1206	ABOGOH010000033.1 Salmonella enterica strain PNUSAS388816 SAMN37926518-rid19938023.denovo.36, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABOGOH010000060.1 Salmonella enterica strain PNUSAS388816 SAMN37926518-rid19938023.guided.35, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOGOH010000042.1 Salmonella enterica strain PNUSAS388816 SAMN37926518-rid19938023.denovo.47, whole genome shotgun sequence	1861..1991	enterobacteriales	IncX1	98.66	374 / 374	ABOGOH010000029.1 Salmonella enterica strain PNUSAS388816 SAMN37926518-rid19938023.denovo.30, whole genome shotgun sequence	6956..7329																																																avrA	ABOGOH010000001.1	589500..590369	99.885	870	0						
GCA_032973825.1_PDT001951954.1_genomic.fna	Salmonella_enterica	0.5201	298.067 KB	7	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGOI010000011.1 Salmonella enterica strain PNUSAS394212 SAMN37926070-rid19937933.denovo.11, whole genome shotgun sequence	84237..84674	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGOI010000055.1 Salmonella enterica strain PNUSAS394212 SAMN37926070-rid19937933.guided.29, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABOGOI010000030.1 Salmonella enterica strain PNUSAS394212 SAMN37926070-rid19937933.denovo.31, whole genome shotgun sequence	12587..12846	enterobacteriales	IncX1	100	373 / 373	ABOGOI010000039.1 Salmonella enterica strain PNUSAS394212 SAMN37926070-rid19937933.denovo.42, whole genome shotgun sequence	1271..1643																																																avrA	ABOGOI010000008.1	156101..156970	99.655	870	0						
GCA_032973925.1_PDT001772517.1_genomic.fna	Salmonella_enterica	0.5134	269.318 KB	6	aroC_65,dnaN_451,hemD_29,hisD_312,purE_20,sucA_26,thrA_60	2765	48:g,z51:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_65	dnaN	100	100	dnaN_451	hemD	100	100	hemD_29	hisD	100	100	hisD_312	purE	100	100	purE_20	sucA	100	100	sucA_26	thrA	100	100	thrA_60	48	g,z51	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 48:g,z51:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032973985.1_PDT001772515.1_genomic.fna	Salmonella_enterica	0.5213	406.073 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGOM010000001.1 Salmonella enterica strain PNUSAS354321 SAMN35667787-rid18339083.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGOM010000022.1 Salmonella enterica strain PNUSAS354321 SAMN35667787-rid18339083.guided.17, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGOM010000016.1 Salmonella enterica strain PNUSAS354321 SAMN35667787-rid18339083.denovo.16, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOGOM010000017.1 Salmonella enterica strain PNUSAS354321 SAMN35667787-rid18339083.denovo.18, whole genome shotgun sequence	3372..3633																																																avrA	ABOGOM010000004.1	140720..141589	99.54	870	0						
GCA_032974005.1_PDT001772520.1_genomic.fna	Salmonella_enterica	0.5215	250.963 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGOJ010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322488 SAMN35667781-rid18328693.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGOJ010000035.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322488 SAMN35667781-rid18328693.guided.19, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGOJ010000028.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322488 SAMN35667781-rid18328693.denovo.31, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOGOJ010000025.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322488 SAMN35667781-rid18328693.denovo.27, whole genome shotgun sequence	4260..4521																																																avrA	ABOGOJ010000006.1	174883..175752	99.54	870	0						
GCA_032974025.1_PDT001772513.1_genomic.fna	Salmonella_enterica	0.5227	415.769 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGON010000001.1 Salmonella enterica strain PNUSAS354364 SAMN35667840-rid18335733.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGON010000036.1 Salmonella enterica strain PNUSAS354364 SAMN35667840-rid18335733.guided.20, whole genome shotgun sequence	32474..32911	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGON010000004.1	39353..40222	99.655	870	0						
GCA_032974045.1_PDT001772510.1_genomic.fna	Salmonella_enterica	0.5214	485.626 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGOO010000001.1 Salmonella enterica strain PNUSAS354348 SAMN35667851-rid18328683.denovo.01, whole genome shotgun sequence	177244..177681	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGOO010000027.1 Salmonella enterica strain PNUSAS354348 SAMN35667851-rid18328683.guided.15, whole genome shotgun sequence	11555..11992	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGOO010000002.1	563682..564551	99.77	870	0						
GCA_032974065.1_PDT001772511.1_genomic.fna	Salmonella_enterica	0.5212	286.492 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGOL010000001.1 Salmonella enterica strain PNUSAS354366 SAMN35667834-rid18339653.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGOL010000032.1 Salmonella enterica strain PNUSAS354366 SAMN35667834-rid18339653.guided.22, whole genome shotgun sequence	11249..11686	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGOL010000017.1 Salmonella enterica strain PNUSAS354366 SAMN35667834-rid18339653.denovo.17, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOGOL010000017.1 Salmonella enterica strain PNUSAS354366 SAMN35667834-rid18339653.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABOGOL010000002.1	506378..507247	99.54	870	0						
GCA_032974125.1_PDT001772501.1_genomic.fna	Salmonella_enterica	0.5228	62.784 KB	24	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGOV010000019.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313049 SAMN35668195-rid18337333.denovo.019, whole genome shotgun sequence	17786..18223	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGOV010000133.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313049 SAMN35668195-rid18337333.guided.077, whole genome shotgun sequence	14100..14537	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGOV010000092.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313049 SAMN35668195-rid18337333.denovo.095, whole genome shotgun sequence	6836..7478	enterobacteriales	IncFII(S)	100	262 / 262	ABOGOV010000104.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313049 SAMN35668195-rid18337333.denovo.107, whole genome shotgun sequence	3174..3435																																																avrA	ABOGOV010000002.1	109966..110835	99.54	870	0						
GCA_032974145.1_PDT001772503.1_genomic.fna	Salmonella_enterica	0.5223	47.144 KB	34	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	-:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		3	Col(pHAD28),Col(pHAD28),Col440II,IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	-	Salmonella enterica subspecies enterica (subspecies I)	I -:i:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGOS010000074.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313006 SAMN35668198-rid18335723.denovo.074, whole genome shotgun sequence	12417..12854	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGOS010000180.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313006 SAMN35668198-rid18335723.guided.104, whole genome shotgun sequence	14149..14586	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOGOS010000115.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313006 SAMN35668198-rid18335723.denovo.118, whole genome shotgun sequence	2272..3477	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGOS010000183.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313006 SAMN35668198-rid18335723.guided.128, whole genome shotgun sequence	2297..3502	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABOGOS010000131.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313006 SAMN35668198-rid18335723.denovo.135, whole genome shotgun sequence	1326..1445	enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABOGOS010000146.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313006 SAMN35668198-rid18335723.denovo.150, whole genome shotgun sequence	846..974		enterobacteriales	Col440II	97.52	282 / 282	ABOGOS010000146.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313006 SAMN35668198-rid18335723.denovo.150, whole genome shotgun sequence	1551..1832		enterobacteriales	IncY	99.74	765 / 765	ABOGOS010000148.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22313006 SAMN35668198-rid18335723.denovo.152, whole genome shotgun sequence	2486..3250																																		avrA	ABOGOS010000062.1	26961..27830	99.885	870	0						
GCA_032974165.1_PDT001772507.1_genomic.fna	Salmonella_enterica	0.5217	504.751 KB	4	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGOR010000002.1 Salmonella enterica strain PNUSAS354368 SAMN35667845-rid18334103.denovo.02, whole genome shotgun sequence	624634..625071	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGOR010000023.1 Salmonella enterica strain PNUSAS354368 SAMN35667845-rid18334103.guided.16, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032974185.1_PDT001772500.1_genomic.fna	Salmonella_enterica	0.5228	71.651 KB	22	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	-:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGOW010000025.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS22313071 SAMN35668386-rid18328673.denovo.025, whole genome shotgun sequence	52396..52833	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGOW010000128.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS22313071 SAMN35668386-rid18328673.guided.057, whole genome shotgun sequence	15437..15874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032974285.1_PDT001772480.1_genomic.fna	Salmonella_enterica	0.523	65.169 KB	23	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOGOZ010000057.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313062 SAMN35668408-rid18329433.denovo.058, whole genome shotgun sequence	12454..12891	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABOGOZ010000145.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313062 SAMN35668408-rid18329433.guided.064, whole genome shotgun sequence	15459..15896	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGOZ010000115.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22313062 SAMN35668408-rid18329433.denovo.118, whole genome shotgun sequence	1577..1718																																																						avrA	ABOGOZ010000023.1	64190..65059	99.54	870	0						
GCA_032974405.1_PDT001772468.1_genomic.fna	Salmonella_enterica	0.5237	48.965 KB	30	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGPF010000018.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312954 SAMN35668197-rid18335693.denovo.018, whole genome shotgun sequence	11321..11758	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGPF010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312954 SAMN35668197-rid18335693.guided.113, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGPF010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312954 SAMN35668197-rid18335693.denovo.124, whole genome shotgun sequence	5320..5879																																																						avrA	ABOGPF010000035.1	43555..44424	99.655	870	0						
GCA_032974545.1_PDT001772442.1_genomic.fna	Salmonella_enterica	0.5114	314.038 KB	6	aroC_88,dnaN_26,hemD_30,hisD_84,purE_21,sucA_92,thrA_80	1845	61:c:z35	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_84	purE	100	100	purE_21	sucA	100	100	sucA_92	thrA	100	100	thrA_80	61	c	z35	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:c:z35		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGPN010000001.1 Salmonella enterica strain PNUSAS354370 SAMN35667849-rid18334093.denovo.01, whole genome shotgun sequence	112578..113015	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGPN010000053.1 Salmonella enterica strain PNUSAS354370 SAMN35667849-rid18334093.guided.30, whole genome shotgun sequence	5240..5677	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGPN010000004.1	38252..39121	96.552	870	0						
GCA_032974565.1_PDT001772440.1_genomic.fna	Salmonella_enterica	0.5212	391.137 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGPM010000002.1 Salmonella enterica strain PNUSAS354351 SAMN35667847-rid18331013.denovo.02, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGPM010000030.1 Salmonella enterica strain PNUSAS354351 SAMN35667847-rid18331013.guided.20, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGPM010000003.1	371910..372779	99.31	870	0						
GCA_032974585.1_PDT001772438.1_genomic.fna	Salmonella_enterica	0.5222	335.811 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGPP010000003.1 Salmonella enterica strain PNUSAS354349 SAMN35667850-rid18331003.denovo.03, whole genome shotgun sequence	173859..174296	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGPP010000034.1 Salmonella enterica strain PNUSAS354349 SAMN35667850-rid18331003.guided.24, whole genome shotgun sequence	61..498	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGPP010000002.1	95178..96047	98.966	870	0						
GCA_032974605.1_PDT001772434.1_genomic.fna	Salmonella_enterica	0.5205	195.134 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGPQ010000001.1 Salmonella enterica strain PNUSAS354357 SAMN35667835-rid18339043.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGPQ010000094.1 Salmonella enterica strain PNUSAS354357 SAMN35667835-rid18339043.guided.32, whole genome shotgun sequence	274..711	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGPQ010000030.1 Salmonella enterica strain PNUSAS354357 SAMN35667835-rid18339043.denovo.31, whole genome shotgun sequence	9109..9668	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOGPQ010000028.1 Salmonella enterica strain PNUSAS354357 SAMN35667835-rid18339043.denovo.29, whole genome shotgun sequence	14298..14439																																																avrA	ABOGPQ010000003.1	39462..40331	99.655	870	0						
GCA_032974625.1_PDT001772436.1_genomic.fna	Salmonella_enterica	0.5209	389.141 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGPO010000001.1 Salmonella enterica strain PNUSAS354365 SAMN35667839-rid18339053.denovo.01, whole genome shotgun sequence	498606..499043	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGPO010000035.1 Salmonella enterica strain PNUSAS354365 SAMN35667839-rid18339053.guided.21, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGPO010000013.1	39559..40428	99.425	870	0						
GCA_032974645.1_PDT001772433.1_genomic.fna	Salmonella_enterica	0.5224	230.525 KB	7	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOGPR010000002.1 Salmonella enterica strain PNUSAS354353 SAMN35667833-rid18329403.denovo.02, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOGPR010000038.1 Salmonella enterica strain PNUSAS354353 SAMN35667833-rid18329403.guided.26, whole genome shotgun sequence	33375..33812	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOGPR010000006.1	98990..99859	99.77	870	0						
GCA_032974665.1_PDT001772432.1_genomic.fna	Salmonella_enterica	0.5216	223.106 KB	8	aroC_10,dnaN_1263,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	9720	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_1263	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGPT010000002.1 Salmonella enterica strain PNUSAS354367 SAMN35667829-rid18334083.denovo.02, whole genome shotgun sequence	47519..47956	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGPT010000056.1 Salmonella enterica strain PNUSAS354367 SAMN35667829-rid18334083.guided.25, whole genome shotgun sequence	14845..15282	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOGPT010000028.1 Salmonella enterica strain PNUSAS354367 SAMN35667829-rid18334083.denovo.29, whole genome shotgun sequence	31497..32357	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOGPT010000057.1 Salmonella enterica strain PNUSAS354367 SAMN35667829-rid18334083.guided.38, whole genome shotgun sequence	121..981	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOGPT010000028.1 Salmonella enterica strain PNUSAS354367 SAMN35667829-rid18334083.denovo.29, whole genome shotgun sequence	25859..26674	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOGPT010000057.1 Salmonella enterica strain PNUSAS354367 SAMN35667829-rid18334083.guided.38, whole genome shotgun sequence	5804..6619	Sulfamethoxazole	AY034138	dfrA1	99.79	474/474	ABOGPT010000028.1 Salmonella enterica strain PNUSAS354367 SAMN35667829-rid18334083.denovo.29, whole genome shotgun sequence	36447..36920	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABOGPT010000028.1 Salmonella enterica strain PNUSAS354367 SAMN35667829-rid18334083.denovo.29, whole genome shotgun sequence	36447..36920	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABOGPT010000028.1 Salmonella enterica strain PNUSAS354367 SAMN35667829-rid18334083.denovo.29, whole genome shotgun sequence	36447..36920	Trimethoprim	X00926	dfrA1	99.79	474/474	ABOGPT010000060.1 Salmonella enterica strain PNUSAS354367 SAMN35667829-rid18334083.guided.45, whole genome shotgun sequence	5128..5601	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABOGPT010000060.1 Salmonella enterica strain PNUSAS354367 SAMN35667829-rid18334083.guided.45, whole genome shotgun sequence	5128..5601	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABOGPT010000060.1 Salmonella enterica strain PNUSAS354367 SAMN35667829-rid18334083.guided.45, whole genome shotgun sequence	5128..5601	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFIB(S)	100	643 / 643	ABOGPT010000015.1 Salmonella enterica strain PNUSAS354367 SAMN35667829-rid18334083.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOGPT010000015.1 Salmonella enterica strain PNUSAS354367 SAMN35667829-rid18334083.denovo.15, whole genome shotgun sequence	30408..30669		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOGPT010000028.1 Salmonella enterica strain PNUSAS354367 SAMN35667829-rid18334083.denovo.29, whole genome shotgun sequence	45334..45475																																									avrA	ABOGPT010000006.1	39885..40753	100	869	0						
GCA_032974685.1_PDT001772428.1_genomic.fna	Salmonella_enterica	0.5218	194.088 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGPU010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322490 SAMN35667790-rid18339023.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGPU010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322490 SAMN35667790-rid18339023.denovo.33, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGPU010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322490 SAMN35667790-rid18339023.denovo.33, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOGPU010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322490 SAMN35667790-rid18339023.denovo.51, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOGPU010000045.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322490 SAMN35667790-rid18339023.denovo.51, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABOGPU010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322490 SAMN35667790-rid18339023.guided.46, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGPU010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322490 SAMN35667790-rid18339023.guided.46, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOGPU010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322490 SAMN35667790-rid18339023.guided.47, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOGPU010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322490 SAMN35667790-rid18339023.guided.50, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOGPU010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322490 SAMN35667790-rid18339023.guided.50, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABOGPU010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322490 SAMN35667790-rid18339023.denovo.33, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGPU010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322490 SAMN35667790-rid18339023.guided.46, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOGPU010000033.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322490 SAMN35667790-rid18339023.denovo.33, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGPU010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322490 SAMN35667790-rid18339023.guided.38, whole genome shotgun sequence	5015..6214	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGPU010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322490 SAMN35667790-rid18339023.denovo.39, whole genome shotgun sequence	9109..9668																																																						avrA	ABOGPU010000005.1	149828..150697	99.655	870	0						
GCA_032974705.1_PDT001772430.1_genomic.fna	Salmonella_enterica	0.5208	317.824 KB	6	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGPS010000001.1 Salmonella enterica strain PNUSAS354356 SAMN35667836-rid18339033.denovo.01, whole genome shotgun sequence	149709..150146	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGPS010000032.1 Salmonella enterica strain PNUSAS354356 SAMN35667836-rid18339033.guided.22, whole genome shotgun sequence	9992..10429	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032974725.1_PDT001772426.1_genomic.fna	Salmonella_enterica	0.5217	268.596 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGPV010000001.1 Salmonella enterica strain PNUSAS354322 SAMN35667786-rid18335653.denovo.01, whole genome shotgun sequence	569491..569928	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGPV010000042.1 Salmonella enterica strain PNUSAS354322 SAMN35667786-rid18335653.guided.31, whole genome shotgun sequence	10881..11318	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOGPV010000006.1	94133..95002	99.885	870	0						
GCA_032974745.1_PDT001772209.1_genomic.fna	Salmonella_enterica	0.5219	244.09 KB	5	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGQB010000001.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322454 SAMN35666072-rid18328643.denovo.01, whole genome shotgun sequence	457641..458078	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGQB010000033.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322454 SAMN35666072-rid18328643.guided.24, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOGQB010000028.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322454 SAMN35666072-rid18328643.denovo.31, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABOGQB010000026.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12322454 SAMN35666072-rid18328643.denovo.29, whole genome shotgun sequence	3175..3285																																																avrA	ABOGQB010000002.1	153062..153931	99.425	870	0						
GCA_032974765.1_PDT001772420.1_genomic.fna	Salmonella_enterica	0.5223	106.572 KB	13	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGPY010000033.1 Salmonella enterica strain PNUSAS354318 SAMN35667779-rid18334063.denovo.33, whole genome shotgun sequence	10107..10544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGPY010000072.1 Salmonella enterica strain PNUSAS354318 SAMN35667779-rid18334063.guided.58, whole genome shotgun sequence	4500..4937	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABOGPY010000031.1 Salmonella enterica strain PNUSAS354318 SAMN35667779-rid18334063.denovo.31, whole genome shotgun sequence	26921..27180																																																																	
GCA_032974785.1_PDT001772413.1_genomic.fna	Salmonella_enterica	0.5216	208.507 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGPZ010000002.1 Salmonella enterica strain PNUSAS354288 SAMN35667765-rid18329393.denovo.02, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGPZ010000044.1 Salmonella enterica strain PNUSAS354288 SAMN35667765-rid18329393.guided.39, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOGPZ010000003.1	171282..172150	99.77	870	0						
GCA_032974795.1_PDT001772424.1_genomic.fna	Salmonella_enterica	0.5217	99.31 KB	17	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col156,Col440I	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOGPW010000005.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322492 SAMN35667789-rid18339633.denovo.005, whole genome shotgun sequence	18531..18968	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOGPW010000104.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322492 SAMN35667789-rid18339633.guided.050, whole genome shotgun sequence	20596..21033	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOGPW010000079.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322492 SAMN35667789-rid18339633.denovo.081, whole genome shotgun sequence	557..687	enterobacteriales	Col156	94.81	154 / 154	ABOGPW010000081.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322492 SAMN35667789-rid18339633.denovo.083, whole genome shotgun sequence	792..945		enterobacteriales	Col440I	94.59	111 / 114	ABOGPW010000078.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322492 SAMN35667789-rid18339633.denovo.080, whole genome shotgun sequence	3175..3285																																									avrA	ABOGPW010000003.1	183910..184779	99.54	870	0						
GCA_032974825.1_PDT001772422.1_genomic.fna	Salmonella_enterica	0.5216	312.882 KB	5	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGPX010000001.1 Salmonella enterica strain PNUSAS354317 SAMN35667782-rid18334073.denovo.01, whole genome shotgun sequence	372691..373128	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGPX010000036.1 Salmonella enterica strain PNUSAS354317 SAMN35667782-rid18334073.guided.27, whole genome shotgun sequence	6391..6828	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOGPX010000027.1 Salmonella enterica strain PNUSAS354317 SAMN35667782-rid18334073.denovo.30, whole genome shotgun sequence	1604..1734																																																																	
GCA_032974845.1_PDT001772204.1_genomic.fna	Salmonella_enterica	0.5206	381.779 KB	6	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGQA010000001.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322450 SAMN35665083-rid18329383.denovo.01, whole genome shotgun sequence	501417..501854	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGQA010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322450 SAMN35665083-rid18329383.guided.27, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABOGQA010000029.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322450 SAMN35665083-rid18329383.denovo.32, whole genome shotgun sequence	2246..2354	enterobacteriales	IncI1-I(Alpha)	94.93	138 / 142	ABOGQA010000016.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322450 SAMN35665083-rid18329383.denovo.16, whole genome shotgun sequence	77433..77568																																																avrA	ABOGQA010000002.1	39484..40353	99.655	870	0						
GCA_032974855.1_PDT001772202.1_genomic.fna	Salmonella_enterica	0.5217	519.8 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOGQC010000002.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322447 SAMN35665080-rid18335643.denovo.02, whole genome shotgun sequence	76811..77248	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOGQC010000027.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12322447 SAMN35665080-rid18335643.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGQC010000003.1	130895..131764	99.425	870	0						
GCA_032975005.1_PDT001771651.1_genomic.fna	Salmonella_enterica	0.5196	525.017 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGQI010000001.1 Salmonella enterica strain 22MD08GT01-S SAMN35664662-rid18337313.denovo.01, whole genome shotgun sequence	499296..499733	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGQI010000020.1 Salmonella enterica strain 22MD08GT01-S SAMN35664662-rid18337313.denovo.20, whole genome shotgun sequence	1657..2448	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGQI010000020.1 Salmonella enterica strain 22MD08GT01-S SAMN35664662-rid18337313.denovo.20, whole genome shotgun sequence	1657..2448	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOGQI010000042.1 Salmonella enterica strain 22MD08GT01-S SAMN35664662-rid18337313.guided.30, whole genome shotgun sequence	297..1088	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGQI010000042.1 Salmonella enterica strain 22MD08GT01-S SAMN35664662-rid18337313.guided.30, whole genome shotgun sequence	297..1088	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOGQI010000020.1 Salmonella enterica strain 22MD08GT01-S SAMN35664662-rid18337313.denovo.20, whole genome shotgun sequence	2953..3792	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGQI010000042.1 Salmonella enterica strain 22MD08GT01-S SAMN35664662-rid18337313.guided.30, whole genome shotgun sequence	1593..2432	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOGQI010000020.1 Salmonella enterica strain 22MD08GT01-S SAMN35664662-rid18337313.denovo.20, whole genome shotgun sequence	16309..17508	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGQI010000040.1 Salmonella enterica strain 22MD08GT01-S SAMN35664662-rid18337313.guided.26, whole genome shotgun sequence	1669..2868	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																									parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGQI010000023.1 Salmonella enterica strain 22MD08GT01-S SAMN35664662-rid18337313.denovo.23, whole genome shotgun sequence	23053..23612																																																						avrA	ABOGQI010000004.1	145535..146404	98.966	870	0						
GCA_032975225.1_PDT001771630.1_genomic.fna	Salmonella_enterica	0.5219	593.847 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOGQV010000001.1 Salmonella enterica subsp. enterica serovar Javiana strain GT23-0412 SAMN35664310-rid18329353.denovo.01, whole genome shotgun sequence	422350..422787	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOGQV010000027.1 Salmonella enterica subsp. enterica serovar Javiana strain GT23-0412 SAMN35664310-rid18329353.guided.22, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGQV010000003.1	498620..499488	99.425	870	0						
GCA_032975305.1_PDT001771619.1_genomic.fna	Salmonella_enterica	0.522	728.506 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOGRA010000001.1 Salmonella enterica strain PNUSAS353867 SAMN35661983-rid18338973.denovo.01, whole genome shotgun sequence	481976..482413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOGRA010000017.1 Salmonella enterica strain PNUSAS353867 SAMN35661983-rid18338973.guided.12, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOGRA010000003.1	553510..554379	99.655	870	0						
GCA_032975405.1_PDT001771234.1_genomic.fna	Salmonella_enterica	0.523	222.607 KB	7	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGRD010000001.1 Salmonella enterica strain PNUSAS353870 SAMN35661979-rid18329323.denovo.01, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGRD010000039.1 Salmonella enterica strain PNUSAS353870 SAMN35661979-rid18329323.guided.30, whole genome shotgun sequence	10796..11233	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032975425.1_PDT001771232.1_genomic.fna	Salmonella_enterica	0.5168	277.091 KB	6	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440I,repB(R1701)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGRF010000001.1 Salmonella enterica strain FDA1225149-C001-004 SAMN35664524-rid18329313.denovo.01, whole genome shotgun sequence	462105..462542	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGRF010000048.1 Salmonella enterica strain FDA1225149-C001-004 SAMN35664524-rid18329313.guided.33, whole genome shotgun sequence	3020..3457	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOGRF010000033.1 Salmonella enterica strain FDA1225149-C001-004 SAMN35664524-rid18329313.denovo.36, whole genome shotgun sequence	2055..2185	enterobacteriales	Col440I	94.74	114 / 114	ABOGRF010000034.1 Salmonella enterica strain FDA1225149-C001-004 SAMN35664524-rid18329313.denovo.37, whole genome shotgun sequence	787..900		enterobacteriales	repB(R1701)	98.88	623 / 623	ABOGRF010000018.1 Salmonella enterica strain FDA1225149-C001-004 SAMN35664524-rid18329313.denovo.18, whole genome shotgun sequence	37329..37951																																									avrA	ABOGRF010000002.1	145643..146512	98.966	870	0						
GCA_032975485.1_PDT001771136.1_genomic.fna	Salmonella_enterica	0.5219	133.782 KB	13	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col156,Col440I	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOGRH010000004.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309676 SAMN35663993-rid18332463.denovo.04, whole genome shotgun sequence	227167..227604	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOGRH010000081.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309676 SAMN35663993-rid18332463.guided.52, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOGRH010000060.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309676 SAMN35663993-rid18332463.denovo.63, whole genome shotgun sequence	557..687	enterobacteriales	Col156	94.81	154 / 154	ABOGRH010000062.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309676 SAMN35663993-rid18332463.denovo.65, whole genome shotgun sequence	792..945		enterobacteriales	Col440I	94.59	111 / 114	ABOGRH010000057.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32309676 SAMN35663993-rid18332463.denovo.60, whole genome shotgun sequence	3175..3285																																									avrA	ABOGRH010000009.1	158374..159243	99.54	870	0						
GCA_032975545.1_PDT001771142.1_genomic.fna	Salmonella_enterica	0.5215	54.809 KB	27	aroC_62,dnaN_53,hemD_54,hisD_60,purE_508,sucA_53,thrA_54	2132	-:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_508	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGRI010000060.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309673 SAMN35664028-rid18335563.denovo.060, whole genome shotgun sequence	11310..11747	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGRI010000102.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309673 SAMN35664028-rid18335563.denovo.105, whole genome shotgun sequence	6162..6998	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGRI010000102.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309673 SAMN35664028-rid18335563.denovo.105, whole genome shotgun sequence	6998..7801	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOGRI010000205.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309673 SAMN35664028-rid18335563.guided.095, whole genome shotgun sequence	10215..10652	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGRI010000206.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309673 SAMN35664028-rid18335563.guided.126, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGRI010000206.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309673 SAMN35664028-rid18335563.guided.126, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOGRI010000138.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309673 SAMN35664028-rid18335563.denovo.142, whole genome shotgun sequence	2280..3485	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGRI010000207.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309673 SAMN35664028-rid18335563.guided.144, whole genome shotgun sequence	2311..3516	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOGRI010000136.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309673 SAMN35664028-rid18335563.denovo.140, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOGRI010000102.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309673 SAMN35664028-rid18335563.denovo.105, whole genome shotgun sequence	5278..5539		enterobacteriales	IncFII	96.95	262 / 261	ABOGRI010000206.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309673 SAMN35664028-rid18335563.guided.126, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOGRI010000164.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309673 SAMN35664028-rid18335563.denovo.169, whole genome shotgun sequence	1084..1456																																		avrA	ABOGRI010000037.1	39484..40353	99.655	870	0						
GCA_032975665.1_PDT001771118.1_genomic.fna	Salmonella_enterica	0.5212	94.527 KB	15	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),Col440I,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGRQ010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309669 SAMN35663354-rid18332433.denovo.001, whole genome shotgun sequence	119726..120163	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGRQ010000112.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309669 SAMN35663354-rid18332433.guided.030, whole genome shotgun sequence	30260..30697	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABOGRQ010000047.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309669 SAMN35663354-rid18332433.denovo.048, whole genome shotgun sequence	24302..25117	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOGRQ010000114.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309669 SAMN35663354-rid18332433.guided.061, whole genome shotgun sequence	16481..17296	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOGRQ010000047.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309669 SAMN35663354-rid18332433.denovo.048, whole genome shotgun sequence	27294..28493	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGRQ010000114.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309669 SAMN35663354-rid18332433.guided.061, whole genome shotgun sequence	19473..20672	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOGRQ010000086.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309669 SAMN35663354-rid18332433.denovo.090, whole genome shotgun sequence	371..501	enterobacteriales	Col440I	93.81	113 / 114	ABOGRQ010000091.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309669 SAMN35663354-rid18332433.denovo.095, whole genome shotgun sequence	2528..2639		enterobacteriales	IncC	100	417 / 417	ABOGRQ010000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32309669 SAMN35663354-rid18332433.denovo.015, whole genome shotgun sequence	55748..56164																																									avrA	ABOGRQ010000007.1	122752..123621	99.885	870	0						
GCA_032975685.1_PDT001771116.1_genomic.fna	Salmonella_enterica	0.5241	48.486 KB	32	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQLBA010000064.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.denovo.064, whole genome shotgun sequence	12464..12901	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	DAQLBA010000126.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.denovo.130, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	DAQLBA010000174.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.guided.081, whole genome shotgun sequence	14884..15321	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	DAQLBA010000177.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.guided.129, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	DAQLBA010000126.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.denovo.130, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	DAQLBA010000177.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.guided.129, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	DAQLBA010000121.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.denovo.124, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	DAQLBA010000178.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.guided.133, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.76	834/906	DAQLBA010000182.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.guided.166, whole genome shotgun sequence	109..942	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	DAQLBA010000112.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.denovo.115, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	DAQLBA010000179.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.guided.136, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	DAQLBA010000126.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.denovo.130, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	DAQLBA010000177.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.guided.129, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	DAQLBA010000152.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.denovo.160, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	DAQLBA010000181.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.guided.159, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	DAQLBA010000112.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.denovo.115, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	DAQLBA010000180.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.guided.141, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	DAQLBA010000112.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.denovo.115, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	DAQLBA010000180.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.guided.141, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	DAQLBA010000084.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00324 SAMN35622373-rid18332423.denovo.085, whole genome shotgun sequence	4434..4684																																																						avrA	DAQLBA010000005.1	108401..109270	99.77	870	0						
GCA_032975705.1_PDT001771115.1_genomic.fna	Salmonella_enterica	0.5239	58.113 KB	25	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQLBB010000058.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.denovo.058, whole genome shotgun sequence	12432..12869	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	DAQLBB010000116.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.denovo.121, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	DAQLBB010000167.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.guided.067, whole genome shotgun sequence	14109..14546	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	DAQLBB010000170.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.guided.120, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	DAQLBB010000116.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.denovo.121, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	DAQLBB010000170.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.guided.120, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	DAQLBB010000108.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.denovo.112, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	DAQLBB010000169.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.guided.111, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	DAQLBB010000100.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.denovo.103, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	DAQLBB010000171.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.guided.128, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	DAQLBB010000116.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.denovo.121, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	DAQLBB010000170.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.guided.120, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	DAQLBB010000143.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.denovo.151, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	DAQLBB010000173.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.guided.150, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	DAQLBB010000100.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.denovo.103, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	DAQLBB010000172.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.guided.133, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	DAQLBB010000100.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.denovo.103, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	DAQLBB010000172.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.guided.133, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	DAQLBB010000085.1 TPA_asm: Salmonella enterica subsp. enterica strain 22-00325 SAMN35622374-rid18312823.denovo.088, whole genome shotgun sequence	4434..4684																																																						avrA	DAQLBB010000008.1	98362..99231	99.77	870	0						
GCA_032975725.1_PDT001771110.1_genomic.fna	Salmonella_enterica	0.5175	90.363 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGRR010000022.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309636 SAMN35662953-rid18337263.denovo.022, whole genome shotgun sequence	1025..1462	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGRR010000097.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309636 SAMN35662953-rid18337263.denovo.101, whole genome shotgun sequence	480..1316	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOGRR010000097.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309636 SAMN35662953-rid18337263.denovo.101, whole genome shotgun sequence	1316..2118	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGRR010000097.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309636 SAMN35662953-rid18337263.denovo.101, whole genome shotgun sequence	1316..2119	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGRR010000097.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309636 SAMN35662953-rid18337263.denovo.101, whole genome shotgun sequence	1316..2119	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGRR010000097.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309636 SAMN35662953-rid18337263.denovo.101, whole genome shotgun sequence	1316..2119	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABOGRR010000142.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309636 SAMN35662953-rid18337263.guided.067, whole genome shotgun sequence	13760..14197	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGRR010000143.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309636 SAMN35662953-rid18337263.guided.099, whole genome shotgun sequence	2302..3138	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOGRR010000143.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309636 SAMN35662953-rid18337263.guided.099, whole genome shotgun sequence	1500..2302	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOGRR010000143.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309636 SAMN35662953-rid18337263.guided.099, whole genome shotgun sequence	1499..2302	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOGRR010000143.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309636 SAMN35662953-rid18337263.guided.099, whole genome shotgun sequence	1499..2302	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOGRR010000143.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309636 SAMN35662953-rid18337263.guided.099, whole genome shotgun sequence	1499..2302	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOGRR010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309636 SAMN35662953-rid18337263.denovo.048, whole genome shotgun sequence	28961..29287	enterobacteriales	IncHI2A	99.52	630 / 630	ABOGRR010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309636 SAMN35662953-rid18337263.denovo.074, whole genome shotgun sequence	8366..8995		enterobacteriales	IncX1	100	373 / 373	ABOGRR010000086.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309636 SAMN35662953-rid18337263.denovo.089, whole genome shotgun sequence	2218..2590																																									avrA	ABOGRR010000042.1	39489..40358	99.655	870	0						
GCA_032975735.1_PDT001771108.1_genomic.fna	Salmonella_enterica	0.5196	148.698 KB	11	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	-	- 8:i:z6	This antigenic profile has been associated with serotype 'Kentucky' in the Kauffman-White scheme. The existence of the same antigenic formula in multiple species or subspecies is well documented in the Kauffman-White Scheme. The input genome cannot be identified as Salmonella. Check the input for taxonomic ID, contamination, or sequencing quality.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGRT010000005.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309670 SAMN35663355-rid18337253.denovo.05, whole genome shotgun sequence	99071..99508	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGRT010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309670 SAMN35663355-rid18337253.denovo.50, whole genome shotgun sequence	6683..7519	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGRT010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309670 SAMN35663355-rid18337253.denovo.50, whole genome shotgun sequence	7519..8322	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOGRT010000090.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309670 SAMN35663355-rid18337253.guided.28, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGRT010000093.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309670 SAMN35663355-rid18337253.guided.57, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGRT010000093.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309670 SAMN35663355-rid18337253.guided.57, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOGRT010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309670 SAMN35663355-rid18337253.denovo.58, whole genome shotgun sequence	1287..2492	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOGRT010000094.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309670 SAMN35663355-rid18337253.guided.66, whole genome shotgun sequence	2310..3515	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOGRT010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309670 SAMN35663355-rid18337253.denovo.53, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOGRT010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309670 SAMN35663355-rid18337253.denovo.50, whole genome shotgun sequence	5799..6060		enterobacteriales	IncFII	96.95	262 / 261	ABOGRT010000093.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309670 SAMN35663355-rid18337253.guided.57, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOGRT010000069.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309670 SAMN35663355-rid18337253.denovo.74, whole genome shotgun sequence	2153..2525																																		avrA	ABOGRT010000027.1	39484..40353	99.655	870	0						
GCA_032975765.1_PDT001771106.1_genomic.fna	Salmonella_enterica	0.5212	127.038 KB	12	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOGRS010000006.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS32309635 SAMN35662952-rid18334033.denovo.06, whole genome shotgun sequence	145171..145608	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOGRS010000073.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS32309635 SAMN35662952-rid18334033.guided.40, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABOGRS010000054.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS32309635 SAMN35662952-rid18334033.denovo.57, whole genome shotgun sequence	3981..4111																																																						avrA	ABOGRS010000011.1	61407..62276	99.425	870	0						
GCA_032975865.1_PDT001771102.1_genomic.fna	Salmonella_enterica	0.5207	407.391 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGRW010000001.1 Salmonella enterica strain PNUSAS353292 SAMN35661975-rid18335523.denovo.01, whole genome shotgun sequence	674227..674664	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGRW010000030.1 Salmonella enterica strain PNUSAS353292 SAMN35661975-rid18335523.guided.22, whole genome shotgun sequence	9678..10115	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOGRW010000016.1 Salmonella enterica strain PNUSAS353292 SAMN35661975-rid18335523.denovo.16, whole genome shotgun sequence	2740..3273																																																						avrA	ABOGRW010000010.1	150695..151565	99.196	871	0						
GCA_032975905.1_PDT001771098.1_genomic.fna	Salmonella_enterica	0.521	406.453 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGRZ010000001.1 Salmonella enterica strain PNUSAS353873 SAMN35661981-rid18337243.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGRZ010000027.1 Salmonella enterica strain PNUSAS353873 SAMN35661981-rid18337243.guided.15, whole genome shotgun sequence	12698..13135	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGRZ010000018.1 Salmonella enterica strain PNUSAS353873 SAMN35661981-rid18337243.denovo.19, whole genome shotgun sequence	6833..7475	enterobacteriales	IncFII(S)	100	262 / 262	ABOGRZ010000020.1 Salmonella enterica strain PNUSAS353873 SAMN35661981-rid18337243.denovo.22, whole genome shotgun sequence	3374..3635																																																avrA	ABOGRZ010000002.1	553678..554547	99.54	870	0						
GCA_032975925.1_PDT001771096.1_genomic.fna	Salmonella_enterica	0.5208	686.347 KB	3	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGSB010000001.1 Salmonella enterica strain PNUSAS353871 SAMN35661984-rid18334023.denovo.01, whole genome shotgun sequence	596594..597031	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGSB010000031.1 Salmonella enterica strain PNUSAS353871 SAMN35661984-rid18334023.guided.13, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	ABOGSB010000022.1 Salmonella enterica strain PNUSAS353871 SAMN35661984-rid18334023.denovo.25, whole genome shotgun sequence	3345..3457																																																						avrA	ABOGSB010000003.1	140341..141210	99.425	870	0						
GCA_032975945.1_PDT001771090.1_genomic.fna	Salmonella_enterica	0.5214	406.503 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGSC010000001.1 Salmonella enterica strain PNUSAS353864 SAMN35661974-rid18329273.denovo.01, whole genome shotgun sequence	787942..788379	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGSC010000026.1 Salmonella enterica strain PNUSAS353864 SAMN35661974-rid18329273.guided.16, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGSC010000015.1 Salmonella enterica strain PNUSAS353864 SAMN35661974-rid18329273.denovo.15, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOGSC010000015.1 Salmonella enterica strain PNUSAS353864 SAMN35661974-rid18329273.denovo.15, whole genome shotgun sequence	12923..13184		enterobacteriales	IncFII(SARC14)	94.62	446 / 445	ABOGSC010000014.1 Salmonella enterica strain PNUSAS353864 SAMN35661974-rid18329273.denovo.14, whole genome shotgun sequence	25552..25996		enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABOGSC010000014.1 Salmonella enterica strain PNUSAS353864 SAMN35661974-rid18329273.denovo.14, whole genome shotgun sequence	26257..26469																																		avrA	ABOGSC010000002.1	553198..554067	99.54	870	0						
GCA_032975985.1_PDT001771070.1_genomic.fna	Salmonella_enterica	0.5212	405.631 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGSG010000001.1 Salmonella enterica strain PNUSAS354194 SAMN35661595-rid18329253.denovo.01, whole genome shotgun sequence	292946..293383	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGSG010000025.1 Salmonella enterica strain PNUSAS354194 SAMN35661595-rid18329253.guided.16, whole genome shotgun sequence	6009..6446	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGSG010000017.1 Salmonella enterica strain PNUSAS354194 SAMN35661595-rid18329253.denovo.18, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOGSG010000019.1 Salmonella enterica strain PNUSAS354194 SAMN35661595-rid18329253.denovo.21, whole genome shotgun sequence	3388..3649																																																avrA	ABOGSG010000002.1	553056..553925	99.54	870	0						
GCA_032976145.1_PDT001771044.1_genomic.fna	Salmonella_enterica	0.5226	279.685 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGSM010000001.1 Salmonella enterica strain PNUSAS354207 SAMN35661599-rid18337233.denovo.01, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGSM010000038.1 Salmonella enterica strain PNUSAS354207 SAMN35661599-rid18337233.guided.30, whole genome shotgun sequence	7797..8234	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGSM010000007.1	39487..40356	98.966	870	0						
GCA_032976165.1_PDT001771042.1_genomic.fna	Salmonella_enterica	0.5208	159.418 KB	10	aroC_20,dnaN_4,hemD_23,hisD_14,purE_16,sucA_19,thrA_140	423	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_20	dnaN	100	100	dnaN_4	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_19	thrA	100	100	thrA_140	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGSO010000011.1 Salmonella enterica strain PNUSAS354208 SAMN35661596-rid18332393.denovo.11, whole genome shotgun sequence	37880..38317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGSO010000053.1 Salmonella enterica strain PNUSAS354208 SAMN35661596-rid18332393.guided.29, whole genome shotgun sequence	20607..21044	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGSO010000037.1 Salmonella enterica strain PNUSAS354208 SAMN35661596-rid18332393.denovo.39, whole genome shotgun sequence	4910..5051																																																																	
GCA_032976185.1_PDT001771040.1_genomic.fna	Salmonella_enterica	0.5226	385.721 KB	4	aroC_22,dnaN_63,hemD_25,hisD_164,purE_184,sucA_23,thrA_4	6962	9:a:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_63	hemD	100	100	hemD_25	hisD	100	100	hisD_164	purE	100	100	purE_184	sucA	100	100	sucA_23	thrA	100	100	thrA_4	9	a	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Durban		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGSN010000002.1 Salmonella enterica strain PNUSAS354211 SAMN35661600-rid18330923.denovo.02, whole genome shotgun sequence	624804..625241	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGSN010000047.1 Salmonella enterica strain PNUSAS354211 SAMN35661600-rid18330923.guided.22, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	97.22	216 / 262	ABOGSN010000025.1 Salmonella enterica strain PNUSAS354211 SAMN35661600-rid18330923.denovo.28, whole genome shotgun sequence	6979..7191																																																						avrA	ABOGSN010000003.1	98189..99058	99.425	870	0						
GCA_032976205.1_PDT001771036.1_genomic.fna	Salmonella_enterica	0.5204	246.451 KB	6	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_111	316	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	ColRNAI,ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_111	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGSQ010000001.1 Salmonella enterica strain PNUSAS354202 SAMN35661586-rid18335463.denovo.01, whole genome shotgun sequence	665928..666365	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGSQ010000066.1 Salmonella enterica strain PNUSAS354202 SAMN35661586-rid18335463.guided.22, whole genome shotgun sequence	2036..2473	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABOGSQ010000039.1 Salmonella enterica strain PNUSAS354202 SAMN35661586-rid18335463.denovo.43, whole genome shotgun sequence	3981..4111	enterobacteriales	ColpVC	98.96	193 / 193	ABOGSQ010000056.1 Salmonella enterica strain PNUSAS354202 SAMN35661586-rid18335463.denovo.60, whole genome shotgun sequence	1000..1192		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGSQ010000028.1 Salmonella enterica strain PNUSAS354202 SAMN35661586-rid18335463.denovo.32, whole genome shotgun sequence	794..935																																									avrA	ABOGSQ010000004.1	129546..130415	99.425	870	0						
GCA_032976225.1_PDT001771038.1_genomic.fna	Salmonella_enterica	0.5199	182.7 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGSP010000002.1 Salmonella enterica strain PNUSAS354197 SAMN35661589-rid18330913.denovo.02, whole genome shotgun sequence	61264..61701	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGSP010000092.1 Salmonella enterica strain PNUSAS354197 SAMN35661589-rid18330913.guided.37, whole genome shotgun sequence	20997..21434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOGSP010000057.1 Salmonella enterica strain PNUSAS354197 SAMN35661589-rid18330913.denovo.60, whole genome shotgun sequence	814..1456	enterobacteriales	IncFII(S)	100	262 / 262	ABOGSP010000055.1 Salmonella enterica strain PNUSAS354197 SAMN35661589-rid18330913.denovo.58, whole genome shotgun sequence	895..1156		enterobacteriales	IncX1	98.93	374 / 374	ABOGSP010000032.1 Salmonella enterica strain PNUSAS354197 SAMN35661589-rid18330913.denovo.33, whole genome shotgun sequence	27988..28361																																									avrA	ABOGSP010000001.1	451008..451877	99.885	870	0						
GCA_032976245.1_PDT001771035.1_genomic.fna	Salmonella_enterica	0.5212	405.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGSR010000001.1 Salmonella enterica strain PNUSAS354206 SAMN35661591-rid18329233.denovo.01, whole genome shotgun sequence	812465..812902	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGSR010000026.1 Salmonella enterica strain PNUSAS354206 SAMN35661591-rid18329233.guided.21, whole genome shotgun sequence	1962..2399	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGSR010000020.1 Salmonella enterica strain PNUSAS354206 SAMN35661591-rid18329233.denovo.22, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOGSR010000021.1 Salmonella enterica strain PNUSAS354206 SAMN35661591-rid18329233.denovo.24, whole genome shotgun sequence	3392..3653																																																avrA	ABOGSR010000002.1	552621..553490	99.54	870	0						
GCA_032976285.1_PDT001771034.1_genomic.fna	Salmonella_enterica	0.5219	199.234 KB	7	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	4	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aadA1,aac(3)-VIa,sul1,sul1	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGSS010000001.1 Salmonella enterica strain PNUSAS354200 SAMN35661592-rid18337223.denovo.01, whole genome shotgun sequence	727904..728341	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOGSS010000029.1 Salmonella enterica strain PNUSAS354200 SAMN35661592-rid18337223.denovo.31, whole genome shotgun sequence	17318..18220	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABOGSS010000029.1 Salmonella enterica strain PNUSAS354200 SAMN35661592-rid18337223.denovo.31, whole genome shotgun sequence	18384..19175	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	98.63	438/438	ABOGSS010000054.1 Salmonella enterica strain PNUSAS354200 SAMN35661592-rid18337223.guided.27, whole genome shotgun sequence	4903..5340	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOGSS010000058.1 Salmonella enterica strain PNUSAS354200 SAMN35661592-rid18337223.guided.40, whole genome shotgun sequence	5406..6197	Spectinomycin, Streptomycin	JQ414041	aac(3)-VIa	100	903/903	ABOGSS010000059.1 Salmonella enterica strain PNUSAS354200 SAMN35661592-rid18337223.guided.47, whole genome shotgun sequence	37..939	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	sul1	100	840/840	ABOGSS010000029.1 Salmonella enterica strain PNUSAS354200 SAMN35661592-rid18337223.denovo.31, whole genome shotgun sequence	10479..11318	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGSS010000057.1 Salmonella enterica strain PNUSAS354200 SAMN35661592-rid18337223.guided.36, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGSS010000031.1 Salmonella enterica strain PNUSAS354200 SAMN35661592-rid18337223.denovo.33, whole genome shotgun sequence	3702..3843																																																						avrA	ABOGSS010000002.1	39347..40216	99.195	870	0						
GCA_032976305.1_PDT001771030.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGSU010000001.1 Salmonella enterica strain 23NC05CG01-S SAMN35657430-rid18338933.denovo.01, whole genome shotgun sequence	648822..649259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGSU010000029.1 Salmonella enterica strain 23NC05CG01-S SAMN35657430-rid18338933.guided.13, whole genome shotgun sequence	33852..34289	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGSU010000016.1 Salmonella enterica strain 23NC05CG01-S SAMN35657430-rid18338933.denovo.18, whole genome shotgun sequence	6111..6753	enterobacteriales	IncFII(S)	100	262 / 262	ABOGSU010000018.1 Salmonella enterica strain 23NC05CG01-S SAMN35657430-rid18338933.denovo.21, whole genome shotgun sequence	3403..3664																																																avrA	ABOGSU010000002.1	585480..586349	99.54	870	0						
GCA_032976325.1_PDT001771026.1_genomic.fna	Salmonella_enterica	0.5179	328.693 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGSX010000001.1 Salmonella enterica strain 23NC03GT03-S SAMN35019955-rid18338923.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGSX010000042.1 Salmonella enterica strain 23NC03GT03-S SAMN35019955-rid18338923.guided.20, whole genome shotgun sequence	38537..38974	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOGSX010000008.1 Salmonella enterica strain 23NC03GT03-S SAMN35019955-rid18338923.denovo.08, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOGSX010000044.1 Salmonella enterica strain 23NC03GT03-S SAMN35019955-rid18338923.guided.30, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGSX010000002.1	169368..170237	99.195	870	0						
GCA_032976375.1_PDT001771028.1_genomic.fna	Salmonella_enterica	0.5208	203.759 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGSV010000001.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGSV010000034.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.denovo.38, whole genome shotgun sequence	8173..8964	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGSV010000034.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.denovo.38, whole genome shotgun sequence	8173..8964	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOGSV010000040.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.denovo.48, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOGSV010000040.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.denovo.48, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOGSV010000059.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.guided.13, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGSV010000063.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.guided.39, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGSV010000063.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.guided.39, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOGSV010000066.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.guided.47, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOGSV010000066.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.guided.47, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOGSV010000038.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.denovo.44, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOGSV010000064.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.guided.43, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOGSV010000034.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.denovo.38, whole genome shotgun sequence	6829..7668	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGSV010000063.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.guided.39, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOGSV010000031.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.denovo.34, whole genome shotgun sequence	941..2140	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGSV010000062.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.guided.35, whole genome shotgun sequence	972..2171	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOGSV010000035.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.denovo.40, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOGSV010000065.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.guided.45, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGSV010000028.1 Salmonella enterica strain 23NC05CH01-S SAMN35657432-rid18330903.denovo.31, whole genome shotgun sequence	10191..10750																																																						avrA	ABOGSV010000002.1	149828..150697	99.655	870	0						
GCA_032976405.1_PDT001771024.1_genomic.fna	Salmonella_enterica	0.5202	180.081 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		2	IncC,IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGSW010000001.1 Salmonella enterica strain 23NC04CH01-S SAMN35657909-rid18339623.denovo.01, whole genome shotgun sequence	356234..356671	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGSW010000053.1 Salmonella enterica strain 23NC04CH01-S SAMN35657909-rid18339623.guided.13, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABOGSW010000033.1 Salmonella enterica strain 23NC04CH01-S SAMN35657909-rid18339623.denovo.35, whole genome shotgun sequence	40526..41341	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOGSW010000055.1 Salmonella enterica strain 23NC04CH01-S SAMN35657909-rid18339623.guided.40, whole genome shotgun sequence	22890..23705	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOGSW010000029.1 Salmonella enterica strain 23NC04CH01-S SAMN35657909-rid18339623.denovo.31, whole genome shotgun sequence	938..2137	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGSW010000057.1 Salmonella enterica strain 23NC04CH01-S SAMN35657909-rid18339623.guided.43, whole genome shotgun sequence	965..2164	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncC	100	417 / 417	ABOGSW010000029.1 Salmonella enterica strain 23NC04CH01-S SAMN35657909-rid18339623.denovo.31, whole genome shotgun sequence	43727..44143	enterobacteriales	IncX1	98.93	374 / 374	ABOGSW010000035.1 Salmonella enterica strain 23NC04CH01-S SAMN35657909-rid18339623.denovo.37, whole genome shotgun sequence	32011..32384																																																avrA	ABOGSW010000009.1	95120..95989	99.885	870	0						
GCA_032976525.1_PDT001770991.1_genomic.fna	Salmonella_enterica	0.5212	405.8 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGTF010000006.1 Salmonella enterica strain PNUSAS354060 SAMN35648257-rid18335443.denovo.06, whole genome shotgun sequence	44035..44472	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGTF010000029.1 Salmonella enterica strain PNUSAS354060 SAMN35648257-rid18335443.guided.18, whole genome shotgun sequence	31445..31882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGTF010000017.1 Salmonella enterica strain PNUSAS354060 SAMN35648257-rid18335443.denovo.17, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABOGTF010000017.1 Salmonella enterica strain PNUSAS354060 SAMN35648257-rid18335443.denovo.17, whole genome shotgun sequence	4078..4339																																																avrA	ABOGTF010000002.1	505310..506179	99.54	870	0						
GCA_032976535.1_PDT001770981.1_genomic.fna	Salmonella_enterica	0.5214	440.064 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGTH010000001.1 Salmonella enterica strain PNUSAS354056 SAMN35648269-rid18335433.denovo.01, whole genome shotgun sequence	843586..844023	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGTH010000024.1 Salmonella enterica strain PNUSAS354056 SAMN35648269-rid18335433.guided.18, whole genome shotgun sequence	11073..11510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGTH010000015.1 Salmonella enterica strain PNUSAS354056 SAMN35648269-rid18335433.denovo.15, whole genome shotgun sequence	36763..37405	enterobacteriales	IncFII(S)	100	262 / 262	ABOGTH010000015.1 Salmonella enterica strain PNUSAS354056 SAMN35648269-rid18335433.denovo.15, whole genome shotgun sequence	42855..43116																																																avrA	ABOGTH010000002.1	553190..554059	99.54	870	0						
GCA_032976605.1_PDT001770977.1_genomic.fna	Salmonella_enterica	0.5213	375.859 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGTJ010000001.1 Salmonella enterica strain PNUSAS354127 SAMN35651076-rid18337203.denovo.01, whole genome shotgun sequence	758218..758655	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGTJ010000029.1 Salmonella enterica strain PNUSAS354127 SAMN35651076-rid18337203.guided.22, whole genome shotgun sequence	20627..21064	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGTJ010000018.1 Salmonella enterica strain PNUSAS354127 SAMN35651076-rid18337203.denovo.18, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOGTJ010000018.1 Salmonella enterica strain PNUSAS354127 SAMN35651076-rid18337203.denovo.18, whole genome shotgun sequence	4416..4677																																																avrA	ABOGTJ010000002.1	553175..554044	99.54	870	0						
GCA_032976645.1_PDT001770975.1_genomic.fna	Salmonella_enterica	0.5214	269.154 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGTK010000001.1 Salmonella enterica strain PNUSAS354129 SAMN35651064-rid18332363.denovo.01, whole genome shotgun sequence	241528..241965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGTK010000036.1 Salmonella enterica strain PNUSAS354129 SAMN35651064-rid18332363.guided.26, whole genome shotgun sequence	2248..2685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGTK010000022.1 Salmonella enterica strain PNUSAS354129 SAMN35651064-rid18332363.denovo.24, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABOGTK010000024.1 Salmonella enterica strain PNUSAS354129 SAMN35651064-rid18332363.denovo.27, whole genome shotgun sequence	3387..3648																																																avrA	ABOGTK010000008.1	175109..175978	99.54	870	0						
GCA_032976665.1_PDT001770971.1_genomic.fna	Salmonella_enterica	0.5211	489.739 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGTN010000001.1 Salmonella enterica strain PNUSAS354053 SAMN35648266-rid18299463.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGTN010000024.1 Salmonella enterica strain PNUSAS354053 SAMN35648266-rid18299463.guided.15, whole genome shotgun sequence	6921..7358	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGTN010000014.1 Salmonella enterica strain PNUSAS354053 SAMN35648266-rid18299463.denovo.14, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABOGTN010000014.1 Salmonella enterica strain PNUSAS354053 SAMN35648266-rid18299463.denovo.14, whole genome shotgun sequence	4078..4339																																																avrA	ABOGTN010000002.1	552978..553847	99.54	870	0						
GCA_032976685.1_PDT001770963.1_genomic.fna	Salmonella_enterica	0.521	194.508 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aadA1,aadA1,aac(6')-Iaa,aph(3')-Ia,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX4	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGTQ010000001.1 Salmonella enterica strain PNUSAS354085 SAMN35652108-rid18330883.denovo.01, whole genome shotgun sequence	460175..460612	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGTQ010000029.1 Salmonella enterica strain PNUSAS354085 SAMN35652108-rid18330883.denovo.29, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGTQ010000029.1 Salmonella enterica strain PNUSAS354085 SAMN35652108-rid18330883.denovo.29, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOGTQ010000051.1 Salmonella enterica strain PNUSAS354085 SAMN35652108-rid18330883.denovo.57, whole genome shotgun sequence	93..908	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aadA1	99.75	792/792	ABOGTQ010000063.1 Salmonella enterica strain PNUSAS354085 SAMN35652108-rid18330883.guided.42, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGTQ010000063.1 Salmonella enterica strain PNUSAS354085 SAMN35652108-rid18330883.guided.42, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOGTQ010000064.1 Salmonella enterica strain PNUSAS354085 SAMN35652108-rid18330883.guided.43, whole genome shotgun sequence	5319..5756	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOGTQ010000065.1 Salmonella enterica strain PNUSAS354085 SAMN35652108-rid18330883.guided.56, whole genome shotgun sequence	127..942	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	sul1	100	840/840	ABOGTQ010000029.1 Salmonella enterica strain PNUSAS354085 SAMN35652108-rid18330883.denovo.29, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGTQ010000063.1 Salmonella enterica strain PNUSAS354085 SAMN35652108-rid18330883.guided.42, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOGTQ010000029.1 Salmonella enterica strain PNUSAS354085 SAMN35652108-rid18330883.denovo.29, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGTQ010000062.1 Salmonella enterica strain PNUSAS354085 SAMN35652108-rid18330883.guided.41, whole genome shotgun sequence	7311..8510	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGTQ010000034.1 Salmonella enterica strain PNUSAS354085 SAMN35652108-rid18330883.denovo.34, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX4	100	374 / 374	ABOGTQ010000031.1 Salmonella enterica strain PNUSAS354085 SAMN35652108-rid18330883.denovo.31, whole genome shotgun sequence	7852..8225																																																avrA	ABOGTQ010000002.1	149828..150697	99.655	870	0						
GCA_032976705.1_PDT001770965.1_genomic.fna	Salmonella_enterica	0.5212	299.327 KB	6	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGTM010000001.1 Salmonella enterica strain PNUSAS354082 SAMN35652114-rid18332353.denovo.01, whole genome shotgun sequence	133775..134212	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGTM010000034.1 Salmonella enterica strain PNUSAS354082 SAMN35652114-rid18332353.guided.24, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOGTM010000024.1 Salmonella enterica strain PNUSAS354082 SAMN35652114-rid18332353.denovo.27, whole genome shotgun sequence	1604..1734																																																																	
GCA_032976725.1_PDT001770959.1_genomic.fna	Salmonella_enterica	0.5205	761.411 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGTO010000001.1 Salmonella enterica strain PNUSAS354123 SAMN35651060-rid18337173.denovo.01, whole genome shotgun sequence	774555..774992	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGTO010000031.1 Salmonella enterica strain PNUSAS354123 SAMN35651060-rid18337173.guided.13, whole genome shotgun sequence	24839..25276	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGTO010000018.1 Salmonella enterica strain PNUSAS354123 SAMN35651060-rid18337173.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOGTO010000021.1 Salmonella enterica strain PNUSAS354123 SAMN35651060-rid18337173.denovo.23, whole genome shotgun sequence	3446..3707		enterobacteriales	IncX1	95.76	377 / 377	ABOGTO010000012.1 Salmonella enterica strain PNUSAS354123 SAMN35651060-rid18337173.denovo.12, whole genome shotgun sequence	35974..36350																																									avrA	ABOGTO010000003.1	585347..586216	99.54	870	0						
GCA_032976745.1_PDT001770958.1_genomic.fna	Salmonella_enterica	0.5232	299.032 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGTP010000001.1 Salmonella enterica strain PNUSAS354095 SAMN35652140-rid18299453.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGTP010000035.1 Salmonella enterica strain PNUSAS354095 SAMN35652140-rid18299453.guided.23, whole genome shotgun sequence	7568..8005	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGTP010000004.1	179513..180382	99.655	870	0						
GCA_032976765.1_PDT001770955.1_genomic.fna	Salmonella_enterica	0.5197	364.167 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pSE11)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGTR010000001.1 Salmonella enterica strain PNUSAS354089 SAMN35652141-rid18334003.denovo.01, whole genome shotgun sequence	561490..561927	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGTR010000035.1 Salmonella enterica strain PNUSAS354089 SAMN35652141-rid18334003.guided.27, whole genome shotgun sequence	4884..5321	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	97.73	264 / 264	ABOGTR010000022.1 Salmonella enterica strain PNUSAS354089 SAMN35652141-rid18334003.denovo.24, whole genome shotgun sequence	3994..4257																																																						avrA	ABOGTR010000011.1	140193..141061	99.195	870	0						
GCA_032976785.1_PDT001770953.1_genomic.fna	Salmonella_enterica	0.5221	449.018 KB	5	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,aadA2b,blaCARB-2,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOGTS010000001.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.denovo.01, whole genome shotgun sequence	615862..616299	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOGTS010000027.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.denovo.33, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOGTS010000036.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.guided.21, whole genome shotgun sequence	17550..17987	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOGTS010000039.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.guided.31, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABOGTS010000040.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.guided.32, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOGTS010000027.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.denovo.33, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOGTS010000039.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.guided.31, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOGTS010000040.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.guided.32, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOGTS010000025.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.denovo.29, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOGTS010000038.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.guided.28, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOGTS010000023.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.denovo.26, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOGTS010000041.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.guided.34, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOGTS010000027.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.denovo.33, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	99.85	657/657	ABOGTS010000039.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.guided.31, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOGTS010000040.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.guided.32, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOGTS010000030.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.denovo.39, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGTS010000043.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.guided.38, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOGTS010000023.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.denovo.26, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOGTS010000042.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.guided.35, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOGTS010000023.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.denovo.26, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOGTS010000042.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.guided.35, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOGTS010000020.1 Salmonella enterica strain PNUSAS354050 SAMN35648295-rid18330873.denovo.23, whole genome shotgun sequence	8402..8652																																																						avrA	ABOGTS010000002.1	174209..175078	99.77	870	0						
GCA_032976805.1_PDT001770951.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGTT010000001.1 Salmonella enterica strain PNUSAS354086 SAMN35652101-rid18338893.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGTT010000026.1 Salmonella enterica strain PNUSAS354086 SAMN35652101-rid18338893.guided.18, whole genome shotgun sequence	20445..20882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGTT010000018.1 Salmonella enterica strain PNUSAS354086 SAMN35652101-rid18338893.denovo.20, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOGTT010000020.1 Salmonella enterica strain PNUSAS354086 SAMN35652101-rid18338893.denovo.22, whole genome shotgun sequence	3397..3658																																																avrA	ABOGTT010000002.1	553636..554505	99.54	870	0						
GCA_032976825.1_PDT001770949.1_genomic.fna	Salmonella_enterica	0.5212	550.432 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGTU010000002.1 Salmonella enterica strain PNUSAS354097 SAMN35652225-rid18338883.denovo.02, whole genome shotgun sequence	649883..650320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGTU010000053.1 Salmonella enterica strain PNUSAS354097 SAMN35652225-rid18338883.guided.33, whole genome shotgun sequence	49..486	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOGTU010000023.1 Salmonella enterica strain PNUSAS354097 SAMN35652225-rid18338883.denovo.23, whole genome shotgun sequence	11639..12281																																																						avrA	ABOGTU010000003.1	559347..560216	99.425	870	0						
GCA_032976845.1_PDT001770948.1_genomic.fna	Salmonella_enterica	0.5215	365.034 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGTV010000001.1 Salmonella enterica strain PNUSAS354080 SAMN35652107-rid18299443.denovo.01, whole genome shotgun sequence	498154..498591	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGTV010000032.1 Salmonella enterica strain PNUSAS354080 SAMN35652107-rid18299443.guided.25, whole genome shotgun sequence	6107..6544	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGTV010000008.1	140447..141316	99.54	870	0						
GCA_032976855.1_PDT001770947.1_genomic.fna	Salmonella_enterica	0.521	340.302 KB	7	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGTX010000002.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.denovo.02, whole genome shotgun sequence	261089..261526	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOGTX010000022.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.denovo.22, whole genome shotgun sequence	7418..8254	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGTX010000022.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.denovo.22, whole genome shotgun sequence	8254..9057	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOGTX010000036.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.guided.28, whole genome shotgun sequence	4793..5629	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOGTX010000036.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.guided.28, whole genome shotgun sequence	3990..4793	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOGTX010000037.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.guided.29, whole genome shotgun sequence	2657..3094	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOGTX010000022.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.denovo.22, whole genome shotgun sequence	38274..39419	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOGTX010000034.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.guided.25, whole genome shotgun sequence	14420..15565	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOGTX010000022.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.denovo.22, whole genome shotgun sequence	3069..4282	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOGTX010000038.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.guided.31, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOGTX010000022.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.denovo.22, whole genome shotgun sequence	9118..9933	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOGTX010000036.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.guided.28, whole genome shotgun sequence	3114..3929	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOGTX010000022.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.denovo.22, whole genome shotgun sequence	4883..6157	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOGTX010000036.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.guided.28, whole genome shotgun sequence	6890..8164	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOGTX010000021.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.denovo.21, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOGTX010000018.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.denovo.18, whole genome shotgun sequence	16913..17172		enterobacteriales	IncX1	98.66	374 / 374	ABOGTX010000018.1 Salmonella enterica strain PNUSAS354079 SAMN35652110-rid18337163.denovo.18, whole genome shotgun sequence	52767..53140																																									avrA	ABOGTX010000006.1	173549..174417	99.54	870	0						
GCA_032976885.1_PDT001770943.1_genomic.fna	Salmonella_enterica	0.5213	400.829 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGTW010000001.1 Salmonella enterica strain PNUSAS354125 SAMN35649082-rid18338873.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGTW010000025.1 Salmonella enterica strain PNUSAS354125 SAMN35649082-rid18338873.guided.18, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGTW010000013.1 Salmonella enterica strain PNUSAS354125 SAMN35649082-rid18338873.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOGTW010000013.1 Salmonella enterica strain PNUSAS354125 SAMN35649082-rid18338873.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABOGTW010000002.1	553636..554505	99.54	870	0						
GCA_032976925.1_PDT001770938.1_genomic.fna	Salmonella_enterica	0.5218	368.822 KB	6	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGTZ010000010.1 Salmonella enterica strain PNUSAS354081 SAMN35652104-rid18299433.denovo.10, whole genome shotgun sequence	70312..70749	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGTZ010000032.1 Salmonella enterica strain PNUSAS354081 SAMN35652104-rid18299433.guided.30, whole genome shotgun sequence	225..662	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGTZ010000003.1	148520..149389	99.77	870	0						
GCA_032976945.1_PDT001770936.1_genomic.fna	Salmonella_enterica	0.5207	403.733 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGUA010000001.1 Salmonella enterica strain PNUSAS354084 SAMN35652099-rid18296673.denovo.01, whole genome shotgun sequence	494584..495021	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGUA010000034.1 Salmonella enterica strain PNUSAS354084 SAMN35652099-rid18296673.guided.26, whole genome shotgun sequence	5153..5590	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOGUA010000004.1 Salmonella enterica strain PNUSAS354084 SAMN35652099-rid18296673.denovo.04, whole genome shotgun sequence	388906..389328	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOGUA010000033.1 Salmonella enterica strain PNUSAS354084 SAMN35652099-rid18296673.guided.25, whole genome shotgun sequence	19343..19765	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.74	114 / 114	ABOGUA010000025.1 Salmonella enterica strain PNUSAS354084 SAMN35652099-rid18296673.denovo.29, whole genome shotgun sequence	1371..1484																																																						avrA	ABOGUA010000002.1	122297..123166	99.195	870	0						
GCA_032976965.1_PDT001770934.1_genomic.fna	Salmonella_enterica	0.5214	240.869 KB	6	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGUB010000001.1 Salmonella enterica strain PNUSAS354122 SAMN35651071-rid18296663.denovo.01, whole genome shotgun sequence	828926..829363	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGUB010000041.1 Salmonella enterica strain PNUSAS354122 SAMN35651071-rid18296663.guided.28, whole genome shotgun sequence	20611..21048	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGUB010000006.1	149811..150680	99.425	870	0						
GCA_032976985.1_PDT001770926.1_genomic.fna	Salmonella_enterica	0.5209	321.07 KB	6	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_107	307	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_107	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGUC010000005.1 Salmonella enterica strain PNUSAS354045 SAMN35648256-rid18299413.denovo.05, whole genome shotgun sequence	298926..299363	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGUC010000035.1 Salmonella enterica strain PNUSAS354045 SAMN35648256-rid18299413.guided.29, whole genome shotgun sequence	320..757	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032977045.1_PDT001770923.1_genomic.fna	Salmonella_enterica	0.5216	329.173 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGUF010000003.1 Salmonella enterica strain PNUSAS354046 SAMN35648259-rid18328563.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGUF010000046.1 Salmonella enterica strain PNUSAS354046 SAMN35648259-rid18328563.guided.20, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOGUF010000015.1 Salmonella enterica strain PNUSAS354046 SAMN35648259-rid18328563.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOGUF010000015.1 Salmonella enterica strain PNUSAS354046 SAMN35648259-rid18328563.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABOGUF010000006.1	155216..156084	100	869	0						
GCA_032977165.1_PDT001770900.1_genomic.fna	Salmonella_enterica	0.5189	328.197 KB	5	aroC_173,dnaN_293,hemD_21,hisD_639,purE_115,sucA_12,thrA_293	2390	1,3,19:m,t:-	10	aac(6')-Iaa,aadA2,aadA1,aac(6')-Iaa,aadA2,aadA1,mph(A),mph(A),cmlA1,floR,cmlA1,floR,cmlA1,qnrS1,qnrS1,sul3,sul3,tet(M),tet(M),dfrA12,dfrA12	1	parC_p.T57S	3	IncFIA(HI1),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_173	dnaN	100	100	dnaN_293	hemD	100	100	hemD_21	hisD	100	100	hisD_639	purE	100	100	purE_115	sucA	100	100	sucA_12	thrA	100	100	thrA_293	1,3,19	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Cannstatt		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOGUJ010000001.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.denovo.01, whole genome shotgun sequence	86147..86584	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOGUJ010000024.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.denovo.27, whole genome shotgun sequence	2969..3760	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOGUJ010000024.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.denovo.27, whole genome shotgun sequence	564..1355	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	99.09	438/438	ABOGUJ010000039.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.guided.24, whole genome shotgun sequence	16141..16578	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOGUJ010000042.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.guided.28, whole genome shotgun sequence	3192..3983	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOGUJ010000045.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.guided.35, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	mph(A)	100	906/906	ABOGUJ010000028.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.denovo.34, whole genome shotgun sequence	2576..3481	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	ABOGUJ010000048.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.guided.40, whole genome shotgun sequence	110..1015	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	cmlA1	99.92	1260/1260	ABOGUJ010000024.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.denovo.27, whole genome shotgun sequence	1448..2707	Chloramphenicol	M64556	floR	98.19	1214/1215	ABOGUJ010000026.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.denovo.31, whole genome shotgun sequence	947..2160	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOGUJ010000042.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.guided.28, whole genome shotgun sequence	4245..5504	Chloramphenicol	M64556	floR	98.19	1214/1215	ABOGUJ010000043.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.guided.30, whole genome shotgun sequence	2602..3815	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOGUJ010000045.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.guided.35, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	qnrS1	100	657/657	ABOGUJ010000019.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.denovo.19, whole genome shotgun sequence	721..1377	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOGUJ010000044.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.guided.32, whole genome shotgun sequence	3185..3841	Ciprofloxacin	AB187515	sul3	100	792/792	ABOGUJ010000030.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.denovo.39, whole genome shotgun sequence	74..865	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOGUJ010000047.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.guided.38, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(M)	96.15	1920/1920	ABOGUJ010000029.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.denovo.37, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABOGUJ010000046.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.guided.36, whole genome shotgun sequence	884..2803	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABOGUJ010000024.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.denovo.27, whole genome shotgun sequence	4168..4665	Trimethoprim	AM040708	dfrA12	100	498/498	ABOGUJ010000042.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.guided.28, whole genome shotgun sequence	2287..2784	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIA(HI1)	100	388 / 388	ABOGUJ010000019.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.denovo.19, whole genome shotgun sequence	16817..17204	enterobacteriales	IncHI1A	100	420 / 420	ABOGUJ010000011.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.denovo.11, whole genome shotgun sequence	11969..12388		enterobacteriales	IncHI1B(R27)	99.81	540 / 540	ABOGUJ010000011.1 Salmonella enterica subsp. enterica serovar Cannstatt strain GT23-0389 SAMN35642770-rid18332333.denovo.11, whole genome shotgun sequence	25465..26004	R27																																								avrA	ABOGUJ010000002.1	509783..510652	99.655	870	0						
GCA_032977245.1_PDT001770890.1_genomic.fna	Salmonella_enterica	0.5209	478.934 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGUN010000001.1 Salmonella enterica strain PNUSAS354023 SAMN35642714-rid18332323.denovo.01, whole genome shotgun sequence	774554..774991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGUN010000024.1 Salmonella enterica strain PNUSAS354023 SAMN35642714-rid18332323.guided.17, whole genome shotgun sequence	2948..3385	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGUN010000014.1 Salmonella enterica strain PNUSAS354023 SAMN35642714-rid18332323.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOGUN010000017.1 Salmonella enterica strain PNUSAS354023 SAMN35642714-rid18332323.denovo.20, whole genome shotgun sequence	3407..3668		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGUN010000012.1 Salmonella enterica strain PNUSAS354023 SAMN35642714-rid18332323.denovo.12, whole genome shotgun sequence	81120..81261																																									avrA	ABOGUN010000002.1	585490..586359	99.54	870	0						
GCA_032977265.1_PDT001770892.1_genomic.fna	Salmonella_enterica	0.522	402.378 KB	4	aroC_157,dnaN_142,hemD_49,hisD_16,purE_40,sucA_35,thrA_3	505	4:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_157	dnaN	100	100	dnaN_142	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_3	4	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Bredeney		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOGUM010000001.1 Salmonella enterica strain PNUSAS354032 SAMN35642727-rid18337153.denovo.01, whole genome shotgun sequence	702080..702517	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOGUM010000025.1 Salmonella enterica strain PNUSAS354032 SAMN35642727-rid18337153.guided.21, whole genome shotgun sequence	2832..3269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032977285.1_PDT001770894.1_genomic.fna	Salmonella_enterica	0.5217	365.264 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGUL010000001.1 Salmonella enterica strain PNUSAS354029 SAMN35642731-rid18299403.denovo.01, whole genome shotgun sequence	498135..498572	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGUL010000032.1 Salmonella enterica strain PNUSAS354029 SAMN35642731-rid18299403.guided.27, whole genome shotgun sequence	605..1042	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGUL010000011.1	94271..95140	99.425	870	0						
GCA_032977305.1_PDT001770882.1_genomic.fna	Salmonella_enterica	0.5213	465.577 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGUQ010000001.1 Salmonella enterica strain PNUSAS354036 SAMN35642711-rid18337143.denovo.01, whole genome shotgun sequence	833251..833688	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGUQ010000024.1 Salmonella enterica strain PNUSAS354036 SAMN35642711-rid18337143.guided.20, whole genome shotgun sequence	1064..1501	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGUQ010000009.1	181854..182722	99.195	870	0						
GCA_032977325.1_PDT001770886.1_genomic.fna	Salmonella_enterica	0.5202	161.08 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	3	gyrA_p.S83F,gyrA_p.D87N,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOGUP010000009.1 Salmonella enterica strain PNUSAS354021 SAMN35642732-rid18330843.denovo.09, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOGUP010000058.1 Salmonella enterica strain PNUSAS354021 SAMN35642732-rid18330843.guided.42, whole genome shotgun sequence	2935..3369	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																												
GCA_032977345.1_PDT001770876.1_genomic.fna	Salmonella_enterica	0.522	593.847 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOGUS010000001.1 Salmonella enterica strain PNUSAS354020 SAMN35642720-rid18330833.denovo.01, whole genome shotgun sequence	422159..422596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOGUS010000027.1 Salmonella enterica strain PNUSAS354020 SAMN35642720-rid18330833.guided.21, whole genome shotgun sequence	828..1265	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGUS010000003.1	498620..499488	99.425	870	0						
GCA_032977365.1_PDT001770884.1_genomic.fna	Salmonella_enterica	0.5233	550.51 KB	3	aroC_81,dnaN_283,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	909	7:y:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_283	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,2	Salmonella enterica subspecies enterica (subspecies I)	Richmond		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOGUO010000001.1 Salmonella enterica strain PNUSAS354027 SAMN35642723-rid18299393.denovo.01, whole genome shotgun sequence	145740..146177	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOGUO010000021.1 Salmonella enterica strain PNUSAS354027 SAMN35642723-rid18299393.guided.16, whole genome shotgun sequence	4990..5427	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGUO010000002.1	560994..561863	99.31	870	0						
GCA_032977385.1_PDT001770878.1_genomic.fna	Salmonella_enterica	0.5203	518.544 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGUR010000001.1 Salmonella enterica strain PNUSAS354031 SAMN35642726-rid18333983.denovo.01, whole genome shotgun sequence	643434..643871	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGUR010000017.1 Salmonella enterica strain PNUSAS354031 SAMN35642726-rid18333983.guided.15, whole genome shotgun sequence	11026..11463	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032977405.1_PDT001770872.1_genomic.fna	Salmonella_enterica	0.5229	555.349 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGUT010000001.1 Salmonella enterica strain PNUSAS354028 SAMN35642712-rid18337133.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGUT010000023.1 Salmonella enterica strain PNUSAS354028 SAMN35642712-rid18337133.guided.14, whole genome shotgun sequence	36810..37247	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGUT010000003.1	178934..179803	99.655	870	0						
GCA_032977425.1_PDT001770868.1_genomic.fna	Salmonella_enterica	0.5218	269.673 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGUU010000001.1 Salmonella enterica strain PNUSAS353915 SAMN35642698-rid18338853.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGUU010000025.1 Salmonella enterica strain PNUSAS353915 SAMN35642698-rid18338853.denovo.25, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGUU010000025.1 Salmonella enterica strain PNUSAS353915 SAMN35642698-rid18338853.denovo.25, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOGUU010000049.1 Salmonella enterica strain PNUSAS353915 SAMN35642698-rid18338853.guided.34, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOGUU010000050.1 Salmonella enterica strain PNUSAS353915 SAMN35642698-rid18338853.guided.35, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOGUU010000050.1 Salmonella enterica strain PNUSAS353915 SAMN35642698-rid18338853.guided.35, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOGUU010000025.1 Salmonella enterica strain PNUSAS353915 SAMN35642698-rid18338853.denovo.25, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABOGUU010000050.1 Salmonella enterica strain PNUSAS353915 SAMN35642698-rid18338853.guided.35, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOGUU010000025.1 Salmonella enterica strain PNUSAS353915 SAMN35642698-rid18338853.denovo.25, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOGUU010000051.1 Salmonella enterica strain PNUSAS353915 SAMN35642698-rid18338853.guided.36, whole genome shotgun sequence	5878..7077	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOGUU010000028.1 Salmonella enterica strain PNUSAS353915 SAMN35642698-rid18338853.denovo.28, whole genome shotgun sequence	9108..9667																																																						avrA	ABOGUU010000003.1	94085..94954	99.655	870	0						
GCA_032977445.1_PDT001770866.1_genomic.fna	Salmonella_enterica	0.5209	525.989 KB	3	aroC_41,dnaN_42,hemD_299,hisD_58,purE_9,sucA_12,thrA_2	1606	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_299	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOGUV010000001.1 Salmonella enterica strain PNUSAS353912 SAMN35642699-rid18330823.denovo.01, whole genome shotgun sequence	1396860..1397297	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOGUV010000034.1 Salmonella enterica strain PNUSAS353912 SAMN35642699-rid18330823.guided.19, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOGUV010000017.1 Salmonella enterica strain PNUSAS353912 SAMN35642699-rid18330823.denovo.17, whole genome shotgun sequence	11451..12093																																																						avrA	ABOGUV010000005.1	93877..94745	99.31	870	0						
GCA_032977465.1_PDT001770861.1_genomic.fna	Salmonella_enterica	0.5217	275.208 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGUW010000001.1 Salmonella enterica strain PNUSAS354017 SAMN35642734-rid18299373.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOGUW010000050.1 Salmonella enterica strain PNUSAS354017 SAMN35642734-rid18299373.guided.32, whole genome shotgun sequence	1640..2077	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOGUW010000003.1	208058..208926	99.77	870	0						
GCA_032977565.1_PDT001740052.2_genomic.fna	Salmonella_enterica	0.5222	875.566 KB	2	aroC_16,dnaN_16,hemD_20,hisD_1044,purE_8,sucA_12,thrA_18	4856	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_1044	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGVB010000001.1 Salmonella enterica strain PNUSAS346522 SAMN35155540-rid18299023.denovo.01, whole genome shotgun sequence	657589..658026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGVB010000020.1 Salmonella enterica strain PNUSAS346522 SAMN35155540-rid18299023.guided.11, whole genome shotgun sequence	39032..39469	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGVB010000002.1	738040..738906	98.966	870	0						
GCA_032979865.1_PDT001952403.1_genomic.fna	Salmonella_enterica	0.5227	67.866 KB	22	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	-:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	-	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:l,z13:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOGZJ010000021.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325891 SAMN37930645-rid19942993.denovo.021, whole genome shotgun sequence	15465..15902	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOGZJ010000129.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325891 SAMN37930645-rid19942993.guided.052, whole genome shotgun sequence	20998..21435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGZJ010000009.1	63724..64592	99.655	869	0						
GCA_032979885.1_PDT001952399.1_genomic.fna	Salmonella_enterica	0.5214	822.121 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOGZN010000001.1 Salmonella enterica strain PNUSAS394770 SAMN37931363-rid19942963.denovo.01, whole genome shotgun sequence	645015..645452	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOGZN010000017.1 Salmonella enterica strain PNUSAS394770 SAMN37931363-rid19942963.guided.07, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGZN010000003.1	561768..562638	99.656	871	0						
GCA_032979905.1_PDT001952406.1_genomic.fna	Salmonella_enterica	0.5219	397.858 KB	5	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOGZL010000001.1 Salmonella enterica strain PNUSAS394776 SAMN37931376-rid19943023.denovo.01, whole genome shotgun sequence	666961..667398	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOGZL010000028.1 Salmonella enterica strain PNUSAS394776 SAMN37931376-rid19943023.guided.21, whole genome shotgun sequence	154..591	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOGZL010000006.1	223342..224211	99.31	870	0						
GCA_032979925.1_PDT001952396.1_genomic.fna	Salmonella_enterica	0.5226	63.457 KB	25	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOGZK010000030.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325893 SAMN37930647-rid19942943.denovo.030, whole genome shotgun sequence	11362..11799	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOGZK010000146.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325893 SAMN37930647-rid19942943.guided.069, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOGZK010000116.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12325893 SAMN37930647-rid19942943.denovo.119, whole genome shotgun sequence	186..316																																																						avrA	ABOGZK010000005.1	62093..62962	99.425	870	0						
GCA_032979945.1_PDT001952397.1_genomic.fna	Salmonella_enterica	0.5214	288.929 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOGZM010000003.1 Salmonella enterica strain PNUSAS394781 SAMN37931371-rid19942633.denovo.03, whole genome shotgun sequence	206289..206726	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOGZM010000037.1 Salmonella enterica strain PNUSAS394781 SAMN37931371-rid19942633.guided.30, whole genome shotgun sequence	167..604	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOGZM010000022.1 Salmonella enterica strain PNUSAS394781 SAMN37931371-rid19942633.denovo.22, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOGZM010000029.1 Salmonella enterica strain PNUSAS394781 SAMN37931371-rid19942633.denovo.29, whole genome shotgun sequence	3392..3653																																																avrA	ABOGZM010000005.1	174828..175697	99.54	870	0						
GCA_032979965.1_PDT001952395.1_genomic.fna	Salmonella_enterica	0.5214	493.58 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGZO010000001.1 Salmonella enterica strain PNUSAS394766 SAMN37931366-rid19942933.denovo.01, whole genome shotgun sequence	396198..396635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGZO010000028.1 Salmonella enterica strain PNUSAS394766 SAMN37931366-rid19942933.guided.11, whole genome shotgun sequence	42396..42833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032979985.1_PDT001952391.1_genomic.fna	Salmonella_enterica	0.5211	276.755 KB	7	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGZR010000001.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325906 SAMN37931225-rid19942893.denovo.01, whole genome shotgun sequence	318242..318679	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGZR010000039.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325906 SAMN37931225-rid19942893.guided.27, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032980005.1_PDT001952394.1_genomic.fna	Salmonella_enterica	0.5207	208.376 KB	7	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,IncFII(p96A),IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGZP010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325902 SAMN37931181-rid19942923.denovo.01, whole genome shotgun sequence	493795..494232	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGZP010000060.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325902 SAMN37931181-rid19942923.guided.36, whole genome shotgun sequence	9049..9486	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABOGZP010000045.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325902 SAMN37931181-rid19942923.denovo.49, whole genome shotgun sequence	2246..2354	enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOGZP010000024.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325902 SAMN37931181-rid19942923.denovo.24, whole genome shotgun sequence	15719..16252		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOGZP010000040.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325902 SAMN37931181-rid19942923.denovo.44, whole genome shotgun sequence	193..334																																																				
GCA_032980025.1_PDT001952392.1_genomic.fna	Salmonella_enterica	0.522	153.275 KB	12	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGZQ010000006.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325883 SAMN37930588-rid19942903.denovo.06, whole genome shotgun sequence	56338..56775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGZQ010000067.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325883 SAMN37930588-rid19942903.guided.50, whole genome shotgun sequence	14166..14603	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032980045.1_PDT001952388.1_genomic.fna	Salmonella_enterica	0.5207	430.003 KB	5	aroC_533,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	2362	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_533	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOGZU010000001.1 Salmonella enterica strain PNUSAS394762 SAMN37931388-rid19942863.denovo.01, whole genome shotgun sequence	561490..561927	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOGZU010000028.1 Salmonella enterica strain PNUSAS394762 SAMN37931388-rid19942863.guided.12, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGZU010000011.1	140203..141071	99.195	870	0						
GCA_032980065.1_PDT001952387.1_genomic.fna	Salmonella_enterica	0.5217	726.651 KB	2	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOGZS010000001.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325903 SAMN37931182-rid19942623.denovo.01, whole genome shotgun sequence	1096656..1097093	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOGZS010000016.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12325903 SAMN37931182-rid19942623.guided.13, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGZS010000002.1	575022..575890	99.655	869	0						
GCA_032980085.1_PDT001952386.1_genomic.fna	Salmonella_enterica	0.5205	287.964 KB	5	aroC_47,dnaN_98,hemD_36,hisD_152,purE_174,sucA_7,thrA_171	638	7:d:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_47	dnaN	100	100	dnaN_98	hemD	100	100	hemD_36	hisD	100	100	hisD_152	purE	100	100	purE_174	sucA	100	100	sucA_7	thrA	100	100	thrA_171	7	d	l,w	Salmonella enterica subspecies enterica (subspecies I)	Livingstone		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOGZT010000002.1 Salmonella enterica subsp. enterica serovar Livingstone strain FSIS12325899 SAMN37931177-rid19942853.denovo.02, whole genome shotgun sequence	165998..166435	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOGZT010000039.1 Salmonella enterica subsp. enterica serovar Livingstone strain FSIS12325899 SAMN37931177-rid19942853.guided.27, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032980105.1_PDT001952385.1_genomic.fna	Salmonella_enterica	0.5207	252.44 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1,sul2,sul1,sul2,sul1,tet(A),tet(C),tet(A),tet(C)	0		2	Col(pHAD28),IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOGZV010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325938 SAMN37931226-rid19942843.denovo.01, whole genome shotgun sequence	370007..370444	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOGZV010000041.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325938 SAMN37931226-rid19942843.denovo.44, whole genome shotgun sequence	12506..13408	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABOGZV010000041.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325938 SAMN37931226-rid19942843.denovo.44, whole genome shotgun sequence	13572..14363	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABOGZV010000064.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325938 SAMN37931226-rid19942843.guided.38, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOGZV010000067.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325938 SAMN37931226-rid19942843.guided.53, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABOGZV010000068.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325938 SAMN37931226-rid19942843.guided.57, whole genome shotgun sequence	2402..3193	Spectinomycin, Streptomycin	JQ414041	sul2	100	816/816	ABOGZV010000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325938 SAMN37931226-rid19942843.denovo.22, whole genome shotgun sequence	5050..5865	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOGZV010000041.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325938 SAMN37931226-rid19942843.denovo.44, whole genome shotgun sequence	5667..6506	Sulfamethoxazole	X15024	sul2	100	816/816	ABOGZV010000062.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325938 SAMN37931226-rid19942843.guided.32, whole genome shotgun sequence	35566..36381	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOGZV010000066.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325938 SAMN37931226-rid19942843.guided.52, whole genome shotgun sequence	378..1217	Sulfamethoxazole	X15024	tet(A)	100	1200/1200	ABOGZV010000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325938 SAMN37931226-rid19942843.denovo.22, whole genome shotgun sequence	1674..2873	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABOGZV010000056.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325938 SAMN37931226-rid19942843.denovo.64, whole genome shotgun sequence	99..1289	Doxycycline, Tetracycline	AF055345	tet(A)	100	1200/1200	ABOGZV010000062.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325938 SAMN37931226-rid19942843.guided.32, whole genome shotgun sequence	38558..39757	Doxycycline, Tetracycline	AJ517790	tet(C)	99.92	1191/1191	ABOGZV010000069.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325938 SAMN37931226-rid19942843.guided.63, whole genome shotgun sequence	836..2026	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOGZV010000049.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325938 SAMN37931226-rid19942843.denovo.55, whole genome shotgun sequence	371..501	enterobacteriales	IncX4	100	374 / 374	ABOGZV010000034.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325938 SAMN37931226-rid19942843.denovo.36, whole genome shotgun sequence	7852..8225																																																avrA	ABOGZV010000006.1	95722..96591	99.885	870	0						
GCA_032980145.1_PDT001952375.1_genomic.fna	Salmonella_enterica	0.521	687.93 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHAM010000001.1 Salmonella enterica strain PNUSAS394765 SAMN37931367-rid19942753.denovo.01, whole genome shotgun sequence	654327..654764	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHAM010000025.1 Salmonella enterica strain PNUSAS394765 SAMN37931367-rid19942753.guided.12, whole genome shotgun sequence	8600..9037	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032980165.1_PDT001952370.1_genomic.fna	Salmonella_enterica	0.5218	194.104 KB	9	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHAS010000001.1 Salmonella enterica strain PNUSAS394771 SAMN37931361-rid19942703.denovo.01, whole genome shotgun sequence	223451..223888	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.27	409/438	ABOHAS010000044.1 Salmonella enterica strain PNUSAS394771 SAMN37931361-rid19942703.guided.39, whole genome shotgun sequence	1..409	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHAS010000019.1	27094..27963	99.425	870	0						
GCA_032980185.1_PDT001952369.1_genomic.fna	Salmonella_enterica	0.5207	426.035 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHAT010000001.1 Salmonella enterica strain PNUSAS394740 SAMN37931315-rid19942693.denovo.01, whole genome shotgun sequence	477468..477905	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHAT010000040.1 Salmonella enterica strain PNUSAS394740 SAMN37931315-rid19942693.guided.28, whole genome shotgun sequence	2450..2887	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHAT010000009.1	150785..151655	99.196	871	0						
GCA_032980205.1_PDT001952368.1_genomic.fna	Salmonella_enterica	0.5221	388.091 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHAY010000002.1 Salmonella enterica strain PNUSAS394779 SAMN37931373-rid19942683.denovo.02, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHAY010000034.1 Salmonella enterica strain PNUSAS394779 SAMN37931373-rid19942683.guided.12, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOHAY010000023.1 Salmonella enterica strain PNUSAS394779 SAMN37931373-rid19942683.denovo.26, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABOHAY010000024.1 Salmonella enterica strain PNUSAS394779 SAMN37931373-rid19942683.denovo.27, whole genome shotgun sequence	2528..2639																																																avrA	ABOHAY010000001.1	557383..558251	99.425	870	0						
GCA_032980225.1_PDT001952367.1_genomic.fna	Salmonella_enterica	0.5216	741.783 KB	2	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHAW010000001.1 Salmonella enterica strain PNUSAS394777 SAMN37931375-rid19942603.denovo.01, whole genome shotgun sequence	1339443..1339880	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHAW010000016.1 Salmonella enterica strain PNUSAS394777 SAMN37931375-rid19942603.guided.14, whole genome shotgun sequence	6306..6743	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHAW010000002.1	149711..150580	99.425	870	0						
GCA_032980245.1_PDT001952373.1_genomic.fna	Salmonella_enterica	0.5224	763.529 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOHAQ010000001.1 Salmonella enterica strain PNUSAS394769 SAMN37931362-rid19942733.denovo.01, whole genome shotgun sequence	1088171..1088608	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOHAQ010000020.1 Salmonella enterica strain PNUSAS394769 SAMN37931362-rid19942733.guided.14, whole genome shotgun sequence	42390..42827	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHAQ010000002.1	659237..660106	99.54	870	0						
GCA_032980265.1_PDT001952374.1_genomic.fna	Salmonella_enterica	0.5204	592.216 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHAP010000001.1 Salmonella enterica strain PNUSAS394767 SAMN37931365-rid19942743.denovo.01, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHAP010000028.1 Salmonella enterica strain PNUSAS394767 SAMN37931365-rid19942743.guided.09, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOHAP010000012.1 Salmonella enterica strain PNUSAS394767 SAMN37931365-rid19942743.denovo.14, whole genome shotgun sequence	34958..35491																																																						avrA	ABOHAP010000003.1	497124..497992	99.425	870	0						
GCA_032980285.1_PDT001952372.1_genomic.fna	Salmonella_enterica	0.5215	324.381 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHAO010000001.1 Salmonella enterica strain PNUSAS394763 SAMN37931369-rid19942723.denovo.01, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHAO010000041.1 Salmonella enterica strain PNUSAS394763 SAMN37931369-rid19942723.guided.21, whole genome shotgun sequence	15334..15771	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOHAO010000015.1 Salmonella enterica strain PNUSAS394763 SAMN37931369-rid19942723.denovo.15, whole genome shotgun sequence	48456..49098	enterobacteriales	IncFII(S)	100	262 / 262	ABOHAO010000015.1 Salmonella enterica strain PNUSAS394763 SAMN37931369-rid19942723.denovo.15, whole genome shotgun sequence	64183..64444																																																avrA	ABOHAO010000003.1	205253..206122	99.885	870	0						
GCA_032980305.1_PDT001952366.1_genomic.fna	Salmonella_enterica	0.522	201.141 KB	9	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,floR,floR,qnrS1,qnrS1,sul2,sul2,sul2,sul2,sul2,tet(A),tet(A),tet(A),tet(A),dfrA14,dfrA14	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHAZ010000001.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.denovo.001, whole genome shotgun sequence	458967..459404	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	818/831	ABOHAZ010000073.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.denovo.084, whole genome shotgun sequence	1..818	Streptomycin	CP000971	aph(3'')-Ib	100	755/804	ABOHAZ010000073.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.denovo.084, whole genome shotgun sequence	824..1578	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOHAZ010000101.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.052, whole genome shotgun sequence	2441..2878	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABOHAZ010000109.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.080, whole genome shotgun sequence	782..1612	Streptomycin	CP000971	aph(3'')-Ib	100	776/804	ABOHAZ010000109.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.080, whole genome shotgun sequence	1..776	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOHAZ010000110.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.081, whole genome shotgun sequence	776..1612	Streptomycin	M28829	aph(3'')-Ib	100	776/804	ABOHAZ010000110.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.081, whole genome shotgun sequence	1..776	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOHAZ010000117.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.099, whole genome shotgun sequence	14..817	Streptomycin	AF321551	aph(3'')-Ib	100	804/804	ABOHAZ010000118.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.100, whole genome shotgun sequence	14..817	Streptomycin	AF321551	blaTEM-1B	100	841/861	ABOHAZ010000076.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.denovo.087, whole genome shotgun sequence	1..841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOHAZ010000112.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.093, whole genome shotgun sequence	144..1004	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.11	1214/1215	ABOHAZ010000060.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.denovo.064, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABOHAZ010000104.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.063, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABOHAZ010000065.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.denovo.069, whole genome shotgun sequence	969..1625	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOHAZ010000108.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.078, whole genome shotgun sequence	18..674	Ciprofloxacin	AB187515	sul2	100	816/816	ABOHAZ010000063.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.denovo.067, whole genome shotgun sequence	88..903	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOHAZ010000113.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.094, whole genome shotgun sequence	196..1011	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOHAZ010000114.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.095, whole genome shotgun sequence	196..1011	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABOHAZ010000115.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.096, whole genome shotgun sequence	196..1011	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOHAZ010000116.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.097, whole genome shotgun sequence	196..1011	Sulfamethoxazole	AY034138	tet(A)	99.92	1200/1200	ABOHAZ010000102.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.061, whole genome shotgun sequence	650..1849	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOHAZ010000103.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.062, whole genome shotgun sequence	650..1849	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1275/1275	ABOHAZ010000106.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.075, whole genome shotgun sequence	575..1849	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOHAZ010000107.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.076, whole genome shotgun sequence	575..1849	Doxycycline, Tetracycline	AF534183	dfrA14	100	474/474	ABOHAZ010000071.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.denovo.079, whole genome shotgun sequence	4..477	Trimethoprim	KF921535	dfrA14	100	474/474	ABOHAZ010000119.1 Salmonella enterica strain PNUSAS394780 SAMN37931372-rid19942673.guided.111, whole genome shotgun sequence	19..492	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																										avrA	ABOHAZ010000008.1	27901..28770	99.885	870	0						
GCA_032980345.1_PDT001952364.1_genomic.fna	Salmonella_enterica	0.5208	101.673 KB	15	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHAV010000002.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32310420 SAMN37931630-rid19942653.denovo.002, whole genome shotgun sequence	13099..13536	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHAV010000129.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32310420 SAMN37931630-rid19942653.guided.056, whole genome shotgun sequence	4059..4496	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOHAV010000058.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32310420 SAMN37931630-rid19942653.denovo.060, whole genome shotgun sequence	6747..7280	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOHAV010000075.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32310420 SAMN37931630-rid19942653.denovo.078, whole genome shotgun sequence	227..368																																																avrA	ABOHAV010000001.1	95269..96138	99.425	870	0						
GCA_032980365.1_PDT001952363.1_genomic.fna	Salmonella_enterica	0.521	215.724 KB	9	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHAX010000001.1 Salmonella enterica strain PNUSAS394808 SAMN37931642-rid19942553.denovo.01, whole genome shotgun sequence	477388..477825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHAX010000062.1 Salmonella enterica strain PNUSAS394808 SAMN37931642-rid19942553.guided.40, whole genome shotgun sequence	1463..1900	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHAX010000015.1	93876..94746	99.196	871	0						
GCA_032980385.1_PDT001952371.1_genomic.fna	Salmonella_enterica	0.5172	353.55 KB	5	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABOHAR010000002.1 Salmonella enterica strain PNUSAS394774 SAMN37931358-rid19942713.denovo.02, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABOHAR010000051.1 Salmonella enterica strain PNUSAS394774 SAMN37931358-rid19942713.guided.23, whole genome shotgun sequence	4407..4844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABOHAR010000009.1 Salmonella enterica strain PNUSAS394774 SAMN37931358-rid19942713.denovo.10, whole genome shotgun sequence	167611..168253																																																																	
GCA_032980405.1_PDT001952362.1_genomic.fna	Salmonella_enterica	0.5209	232.613 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aac(6')-Iaa,aac(3)-IId,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul3,sul3,sul2,tet(B),tet(B)	0		2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHBA010000002.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.denovo.02, whole genome shotgun sequence	233237..233674	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHBA010000048.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.denovo.52, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHBA010000048.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.denovo.52, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABOHBA010000055.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.denovo.61, whole genome shotgun sequence	1027..1887	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aac(6')-Iaa	100	438/438	ABOHBA010000071.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.guided.40, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABOHBA010000076.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.guided.62, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(6)-Id	100	837/837	ABOHBA010000077.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.guided.63, whole genome shotgun sequence	850..1686	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHBA010000077.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.guided.63, whole genome shotgun sequence	47..850	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOHBA010000057.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.denovo.66, whole genome shotgun sequence	128..988	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOHBA010000078.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.guided.65, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOHBA010000048.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.denovo.52, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABOHBA010000051.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.denovo.55, whole genome shotgun sequence	109..900	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOHBA010000074.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.guided.56, whole genome shotgun sequence	1946..2737	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABOHBA010000075.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.guided.60, whole genome shotgun sequence	1565..2380	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOHBA010000043.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.denovo.47, whole genome shotgun sequence	424..1629	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOHBA010000073.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.guided.46, whole genome shotgun sequence	4844..6049	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOHBA010000038.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.denovo.39, whole genome shotgun sequence	19810..20491	enterobacteriales	IncFIC(FII)	94	500 / 499	ABOHBA010000024.1 Salmonella enterica strain PNUSAS394811 SAMN37931644-rid19942543.denovo.24, whole genome shotgun sequence	55736..56232																																																avrA	ABOHBA010000001.1	540747..541616	99.885	870	0						
GCA_032980425.1_PDT001952361.1_genomic.fna	Salmonella_enterica	0.5209	279.77 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHBB010000001.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOHBB010000033.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.denovo.36, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOHBB010000033.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.denovo.36, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOHBB010000052.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.denovo.61, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHBB010000052.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.denovo.61, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOHBB010000065.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.guided.34, whole genome shotgun sequence	13134..13571	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOHBB010000068.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.guided.43, whole genome shotgun sequence	1223..2014	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOHBB010000069.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.guided.45, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOHBB010000071.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.guided.59, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOHBB010000071.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.guided.59, whole genome shotgun sequence	69..872	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOHBB010000072.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.guided.60, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHBB010000072.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.guided.60, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOHBB010000050.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.denovo.57, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOHBB010000073.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.guided.62, whole genome shotgun sequence	444..1304	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOHBB010000033.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.denovo.36, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOHBB010000042.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.denovo.49, whole genome shotgun sequence	1107..2320	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOHBB010000068.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.guided.43, whole genome shotgun sequence	2276..3535	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOHBB010000069.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.guided.45, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOHBB010000074.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.guided.64, whole genome shotgun sequence	102..1315	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOHBB010000075.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.guided.68, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOHBB010000076.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.guided.69, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOHBB010000032.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.denovo.33, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOHBB010000033.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.denovo.36, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOHBB010000067.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.guided.38, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOHBB010000070.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.guided.46, whole genome shotgun sequence	873..2792	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABOHBB010000033.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.denovo.36, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABOHBB010000068.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.guided.43, whole genome shotgun sequence	318..815	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																															enterobacteriales	Col156	94.81	154 / 154	ABOHBB010000036.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.denovo.40, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABOHBB010000043.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.denovo.50, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABOHBB010000051.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.denovo.58, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOHBB010000030.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.denovo.30, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOHBB010000024.1 Salmonella enterica strain PNUSAS391767 SAMN37931529-rid19942533.denovo.24, whole genome shotgun sequence	55745..56241																											avrA	ABOHBB010000002.1	508765..509634	99.885	870	0						
GCA_032980445.1_PDT001952359.1_genomic.fna	Salmonella_enterica	0.521	392.155 KB	4	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83Y,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHBF010000001.1 Salmonella enterica strain PNUSAS394760 SAMN37931390-rid19942523.denovo.01, whole genome shotgun sequence	588285..588722	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHBF010000030.1 Salmonella enterica strain PNUSAS394760 SAMN37931390-rid19942523.guided.13, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032980465.1_PDT001952360.1_genomic.fna	Salmonella_enterica	0.5214	211.103 KB	9	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHBC010000001.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310418 SAMN37931598-rid19942593.denovo.01, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHBC010000048.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310418 SAMN37931598-rid19942593.guided.32, whole genome shotgun sequence	25002..25439	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOHBC010000023.1 Salmonella enterica subsp. enterica serovar London strain FSIS32310418 SAMN37931598-rid19942593.denovo.23, whole genome shotgun sequence	45249..45390																																																						avrA	ABOHBC010000011.1	36962..37831	99.425	870	0						
GCA_032980515.1_PDT001952356.1_genomic.fna	Salmonella_enterica	0.5207	222.848 KB	7	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHBI010000001.1 Salmonella enterica strain PNUSAS394807 SAMN37931636-rid19942503.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOHBI010000027.1 Salmonella enterica strain PNUSAS394807 SAMN37931636-rid19942503.denovo.27, whole genome shotgun sequence	27194..27335																																																						avrA	ABOHBI010000014.1	86024..86894	99.196	871	0						
GCA_032980545.1_PDT001952355.1_genomic.fna	Salmonella_enterica	0.5217	301.851 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_110,sucA_9,thrA_2	302	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_110	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHBH010000001.1 Salmonella enterica strain PNUSAS394148 SAMN37931639-rid19942493.denovo.01, whole genome shotgun sequence	207030..207467	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHBH010000044.1 Salmonella enterica strain PNUSAS394148 SAMN37931639-rid19942493.guided.20, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOHBH010000016.1 Salmonella enterica strain PNUSAS394148 SAMN37931639-rid19942493.denovo.16, whole genome shotgun sequence	44751..45393	enterobacteriales	IncFII(S)	100	262 / 262	ABOHBH010000016.1 Salmonella enterica strain PNUSAS394148 SAMN37931639-rid19942493.denovo.16, whole genome shotgun sequence	29405..29666																																																avrA	ABOHBH010000003.1	208685..209554	99.885	870	0						
GCA_032980585.1_PDT001952353.1_genomic.fna	Salmonella_enterica	0.5223	107.829 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHBJ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.denovo.001, whole genome shotgun sequence	382086..382523	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOHBJ010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.denovo.044, whole genome shotgun sequence	22956..23747	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHBJ010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.denovo.044, whole genome shotgun sequence	22956..23747	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOHBJ010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.denovo.085, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOHBJ010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.denovo.085, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOHBJ010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.guided.072, whole genome shotgun sequence	7474..7911	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOHBJ010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.guided.073, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHBJ010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.guided.073, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOHBJ010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.guided.089, whole genome shotgun sequence	247..1272	Hygromycin	V01499	aac(3)-IV	99.87	777/777	ABOHBJ010000122.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.guided.106, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aac(3)-IV	100	777/777	ABOHBJ010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.guided.107, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOHBJ010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.denovo.087, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOHBJ010000120.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.guided.086, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOHBJ010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.denovo.081, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOHBJ010000119.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.guided.080, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOHBJ010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.denovo.044, whole genome shotgun sequence	21612..22451	Sulfamethoxazole	U12338	sul1	100	840/840	ABOHBJ010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.guided.073, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOHBJ010000044.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.denovo.044, whole genome shotgun sequence	7896..9095	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOHBJ010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.guided.058, whole genome shotgun sequence	7840..9039	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOHBJ010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310423 SAMN37931646-rid19942473.denovo.046, whole genome shotgun sequence	9109..9668																																																						avrA	ABOHBJ010000002.1	149828..150697	99.655	870	0						
GCA_032980645.1_PDT001952350.1_genomic.fna	Salmonella_enterica	0.5211	279.77 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHBO010000001.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOHBO010000031.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.denovo.33, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOHBO010000031.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.denovo.33, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOHBO010000052.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.denovo.60, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHBO010000052.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.denovo.60, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOHBO010000063.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.guided.31, whole genome shotgun sequence	10936..11373	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOHBO010000065.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.guided.37, whole genome shotgun sequence	5515..6306	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOHBO010000066.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.guided.39, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOHBO010000069.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.guided.59, whole genome shotgun sequence	850..1686	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHBO010000069.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.guided.59, whole genome shotgun sequence	47..850	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOHBO010000050.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.denovo.57, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOHBO010000070.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.guided.61, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOHBO010000031.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.denovo.33, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOHBO010000040.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.denovo.45, whole genome shotgun sequence	1346..2559	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOHBO010000065.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.guided.37, whole genome shotgun sequence	6568..7827	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOHBO010000066.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.guided.39, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOHBO010000068.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.guided.54, whole genome shotgun sequence	359..1572	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOHBO010000071.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.guided.64, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	100	816/816	ABOHBO010000072.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.guided.65, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOHBO010000073.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.guided.66, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	99.88	816/816	ABOHBO010000074.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.guided.67, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOHBO010000030.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.denovo.32, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOHBO010000031.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.denovo.33, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOHBO010000064.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.guided.35, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOHBO010000066.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.guided.39, whole genome shotgun sequence	4527..6446	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABOHBO010000031.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.denovo.33, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABOHBO010000065.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.guided.37, whole genome shotgun sequence	4610..5107	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																															enterobacteriales	Col156	94.81	154 / 154	ABOHBO010000035.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.denovo.40, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABOHBO010000042.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.denovo.47, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABOHBO010000051.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.denovo.58, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOHBO010000027.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.denovo.28, whole genome shotgun sequence	19810..20491		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOHBO010000022.1 Salmonella enterica strain PNUSAS391762 SAMN37931528-rid19942443.denovo.22, whole genome shotgun sequence	55735..56231																											avrA	ABOHBO010000002.1	508765..509634	99.885	870	0						
GCA_032980685.1_PDT001952348.1_genomic.fna	Salmonella_enterica	0.5198	208.693 KB	8	aroC_10,dnaN_129,hemD_647,hisD_153,purE_8,sucA_9,thrA_22	4329	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_647	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHBP010000003.1 Salmonella enterica strain PNUSAS394814 SAMN37931645-rid19942573.denovo.03, whole genome shotgun sequence	270896..271333	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHBP010000051.1 Salmonella enterica strain PNUSAS394814 SAMN37931645-rid19942573.guided.39, whole genome shotgun sequence	4366..4803	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABOHBP010000022.1 Salmonella enterica strain PNUSAS394814 SAMN37931645-rid19942573.denovo.22, whole genome shotgun sequence	62736..63378																																																																	
GCA_032980705.1_PDT001952347.1_genomic.fna	Salmonella_enterica	0.5213	232.07 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHBQ010000002.1 Salmonella enterica strain PNUSAS394815 SAMN37931637-rid19942423.denovo.02, whole genome shotgun sequence	24944..25381	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHBQ010000036.1 Salmonella enterica strain PNUSAS394815 SAMN37931637-rid19942423.guided.29, whole genome shotgun sequence	6049..6486	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHBQ010000026.1 Salmonella enterica strain PNUSAS394815 SAMN37931637-rid19942423.denovo.26, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABOHBQ010000029.1 Salmonella enterica strain PNUSAS394815 SAMN37931637-rid19942423.denovo.31, whole genome shotgun sequence	3384..3645																																																avrA	ABOHBQ010000003.1	409608..410477	99.54	870	0						
GCA_032980745.1_PDT001952345.1_genomic.fna	Salmonella_enterica	0.5213	345.305 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHBR010000001.1 Salmonella enterica strain PNUSAS394809 SAMN37931634-rid19942403.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHBR010000036.1 Salmonella enterica strain PNUSAS394809 SAMN37931634-rid19942403.guided.24, whole genome shotgun sequence	12407..12844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHBR010000024.1 Salmonella enterica strain PNUSAS394809 SAMN37931634-rid19942403.denovo.25, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOHBR010000026.1 Salmonella enterica strain PNUSAS394809 SAMN37931634-rid19942403.denovo.27, whole genome shotgun sequence	3392..3653																																																avrA	ABOHBR010000002.1	553468..554337	99.54	870	0						
GCA_032980765.1_PDT001952344.1_genomic.fna	Salmonella_enterica	0.52	152.526 KB	11	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHBU010000001.1 Salmonella enterica strain PNUSAS394810 SAMN37931631-rid19942393.denovo.01, whole genome shotgun sequence	313693..314130	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHBU010000062.1 Salmonella enterica strain PNUSAS394810 SAMN37931631-rid19942393.guided.48, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABOHBU010000024.1 Salmonella enterica strain PNUSAS394810 SAMN37931631-rid19942393.denovo.24, whole genome shotgun sequence	59161..59803																																																																	
GCA_032980865.1_PDT001952338.1_genomic.fna	Salmonella_enterica	0.5199	106.233 KB	17	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHBY010000003.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32310421 SAMN37931633-rid19942563.denovo.003, whole genome shotgun sequence	31680..32117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHBY010000114.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32310421 SAMN37931633-rid19942563.guided.069, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOHBY010000079.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32310421 SAMN37931633-rid19942563.denovo.082, whole genome shotgun sequence	557..687																																																						avrA	ABOHBY010000019.1	93992..94861	99.54	870	0						
GCA_032980885.1_PDT001952339.1_genomic.fna	Salmonella_enterica	0.5195	121.871 KB	14	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHBX010000005.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32310419 SAMN37931599-rid19942343.denovo.005, whole genome shotgun sequence	31680..32117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHBX010000119.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32310419 SAMN37931599-rid19942343.guided.042, whole genome shotgun sequence	15497..15934	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOHBX010000077.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32310419 SAMN37931599-rid19942343.denovo.080, whole genome shotgun sequence	2209..2339	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOHBX010000078.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32310419 SAMN37931599-rid19942343.denovo.081, whole genome shotgun sequence	557..687		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOHBX010000068.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS32310419 SAMN37931599-rid19942343.denovo.071, whole genome shotgun sequence	4615..5148																																									avrA	ABOHBX010000019.1	93998..94867	99.54	870	0						
GCA_032980905.1_PDT001952337.1_genomic.fna	Salmonella_enterica	0.5203	175.929 KB	9	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHBZ010000002.1 Salmonella enterica strain PNUSAS394812 SAMN37931640-rid19942333.denovo.02, whole genome shotgun sequence	88696..89133	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHBZ010000070.1 Salmonella enterica strain PNUSAS394812 SAMN37931640-rid19942333.guided.35, whole genome shotgun sequence	5121..5558	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHBZ010000010.1	132670..133540	99.196	871	0						
GCA_032980945.1_PDT001952335.1_genomic.fna	Salmonella_enterica	0.5088	219.263 KB	8	aroC_33,dnaN_26,hemD_30,hisD_25,purE_21,sucA_32,thrA_28	4164	61:i:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_25	purE	100	100	purE_21	sucA	100	100	sucA_32	thrA	100	100	thrA_28	61	i	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:i:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOHCC010000004.1 Salmonella enterica strain PNUSAS394805 SAMN37931643-rid19942313.denovo.04, whole genome shotgun sequence	92036..92473	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOHCC010000077.1 Salmonella enterica strain PNUSAS394805 SAMN37931643-rid19942313.guided.46, whole genome shotgun sequence	322..759	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHCC010000003.1	186324..187193	96.437	870	0						
GCA_032981005.1_PDT001952332.1_genomic.fna	Salmonella_enterica	0.5214	375.715 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHCE010000001.1 Salmonella enterica strain PNUSAS394836 SAMN37932651-rid19942283.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHCE010000028.1 Salmonella enterica strain PNUSAS394836 SAMN37932651-rid19942283.guided.20, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHCE010000019.1 Salmonella enterica strain PNUSAS394836 SAMN37932651-rid19942283.denovo.22, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOHCE010000015.1 Salmonella enterica strain PNUSAS394836 SAMN37932651-rid19942283.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOHCE010000002.1	553636..554505	99.54	870	0						
GCA_032981095.1_PDT001952251.1_genomic.fna	Salmonella_enterica	0.5235	34.571 KB	44	aroC_189,dnaN_70,hemD_68,hisD_132,purE_175,sucA_9,thrA_172	592	-:z:l,w	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_68	hisD	100	100	hisD_132	purE	100	100	purE_175	sucA	100	100	sucA_9	thrA	100	100	thrA_172	-	z	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:z:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHCO010000107.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12325886 SAMN37930613-rid19940433.denovo.108, whole genome shotgun sequence	1547..1984	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHCO010000256.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12325886 SAMN37930613-rid19940433.guided.196, whole genome shotgun sequence	1478..1915	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOHCO010000197.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12325886 SAMN37930613-rid19940433.denovo.200, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOHCO010000258.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12325886 SAMN37930613-rid19940433.guided.221, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	tet(A)	99.75	1200/1200	ABOHCO010000175.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12325886 SAMN37930613-rid19940433.denovo.177, whole genome shotgun sequence	1133..2332	Doxycycline, Tetracycline	AJ517790	tet(A)	99.75	1200/1200	ABOHCO010000257.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12325886 SAMN37930613-rid19940433.guided.203, whole genome shotgun sequence	1068..2267	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABOHCO010000175.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12325886 SAMN37930613-rid19940433.denovo.177, whole genome shotgun sequence	4352..4482	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOHCO010000190.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12325886 SAMN37930613-rid19940433.denovo.192, whole genome shotgun sequence	186..316		enterobacteriales	Col(pHAD28)	100	131 / 131	ABOHCO010000197.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12325886 SAMN37930613-rid19940433.denovo.200, whole genome shotgun sequence	1522..1652		enterobacteriales	Col440I	93.64	110 / 114	ABOHCO010000198.1 Salmonella enterica subsp. enterica serovar Worthington strain FSIS12325886 SAMN37930613-rid19940433.denovo.201, whole genome shotgun sequence	1568..1677																																		avrA	ABOHCO010000065.1	24891..25760	99.08	870	0						
GCA_032981125.1_PDT001952254.1_genomic.fna	Salmonella_enterica	0.5223	55.751 KB	27	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	5	Col(pHAD28),Col440I,IncC,IncFII(p96A),IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHCN010000009.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325892 SAMN37930646-rid19940453.denovo.009, whole genome shotgun sequence	12481..12918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHCN010000151.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325892 SAMN37930646-rid19940453.guided.065, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOHCN010000119.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325892 SAMN37930646-rid19940453.denovo.123, whole genome shotgun sequence	371..501	enterobacteriales	Col440I	91.74	109 / 114	ABOHCN010000121.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325892 SAMN37930646-rid19940453.denovo.125, whole genome shotgun sequence	2246..2354		enterobacteriales	IncC	100	417 / 417	ABOHCN010000006.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325892 SAMN37930646-rid19940453.denovo.006, whole genome shotgun sequence	1596..2012		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOHCN010000032.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325892 SAMN37930646-rid19940453.denovo.032, whole genome shotgun sequence	8772..9305		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOHCN010000117.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325892 SAMN37930646-rid19940453.denovo.121, whole genome shotgun sequence	316..457																																						
GCA_032981205.1_PDT001952246.1_genomic.fna	Salmonella_enterica	0.5219	57.405 KB	29	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	-:g,m,s:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	-	g,m,s	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:e,n,z15	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHCW010000059.1 Salmonella enterica subsp. enterica serovar Lubbock strain FSIS12325885 SAMN37930590-rid19940413.denovo.060, whole genome shotgun sequence	14075..14512	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHCW010000164.1 Salmonella enterica subsp. enterica serovar Lubbock strain FSIS12325885 SAMN37930590-rid19940413.guided.059, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHCW010000012.1	81554..82423	99.195	870	0						
GCA_032981225.1_PDT001952243.1_genomic.fna	Salmonella_enterica	0.5207	384.939 KB	3	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHCV010000001.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325935 SAMN37930582-rid19940393.denovo.01, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHCV010000034.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325935 SAMN37930582-rid19940393.guided.23, whole genome shotgun sequence	3969..4406	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032981245.1_PDT001952234.1_genomic.fna	Salmonella_enterica	0.5218	731.648 KB	2	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHCY010000001.1 Salmonella enterica strain PNUSAS394669 SAMN37929929-rid19940343.denovo.01, whole genome shotgun sequence	624511..624948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHCY010000017.1 Salmonella enterica strain PNUSAS394669 SAMN37929929-rid19940343.guided.13, whole genome shotgun sequence	5773..6210	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032981255.1_PDT001952155.1_genomic.fna	Salmonella_enterica	0.5214	237.931 KB	9	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	2	aac(6')-Iaa,aac(6')-Iaa,tet(C),tet(C)	1	parC_p.T57S	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOHCZ010000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325926 SAMN37929720-rid19939793.denovo.08, whole genome shotgun sequence	224889..225326	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABOHCZ010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325926 SAMN37929720-rid19939793.guided.34, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	tet(C)	99.83	1191/1191	ABOHCZ010000037.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325926 SAMN37929720-rid19939793.denovo.40, whole genome shotgun sequence	882..2072	Doxycycline, Tetracycline	AF055345	tet(C)	99.83	1191/1191	ABOHCZ010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325926 SAMN37929720-rid19939793.guided.42, whole genome shotgun sequence	923..2113	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHCZ010000016.1	81913..82782	99.31	870	0						
GCA_032981265.1_PDT001952235.1_genomic.fna	Salmonella_enterica	0.5212	575.973 KB	2	aroC_84,dnaN_405,hemD_309,hisD_625,purE_438,sucA_322,thrA_137	2658	16:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_405	hemD	100	100	hemD_309	hisD	100	100	hisD_625	purE	100	100	purE_438	sucA	100	100	sucA_322	thrA	100	100	thrA_137	16	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Nottingham		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOHCX010000001.1 Salmonella enterica strain PNUSAS394667 SAMN37929926-rid19940113.denovo.01, whole genome shotgun sequence	630267..630704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOHCX010000016.1 Salmonella enterica strain PNUSAS394667 SAMN37929926-rid19940113.guided.13, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHCX010000003.1	140434..141303	99.54	870	0						
GCA_032981305.1_PDT001952146.1_genomic.fna	Salmonella_enterica	0.5202	363.782 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(Yp)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHDB010000001.1 Salmonella enterica strain PNUSAS394541 SAMN37929611-rid19941273.denovo.01, whole genome shotgun sequence	562111..562548	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHDB010000033.1 Salmonella enterica strain PNUSAS394541 SAMN37929611-rid19941273.guided.13, whole genome shotgun sequence	24574..25011	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	92.41	224 / 230	ABOHDB010000016.1 Salmonella enterica strain PNUSAS394541 SAMN37929611-rid19941273.denovo.18, whole genome shotgun sequence	33489..33709																																																						avrA	ABOHDB010000011.1	140161..141029	99.195	870	0						
GCA_032981315.1_PDT001952151.1_genomic.fna	Salmonella_enterica	0.5216	292.809 KB	7	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHDA010000002.1 Salmonella enterica strain PNUSAS394543 SAMN37929613-rid19941303.denovo.02, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHDA010000037.1 Salmonella enterica strain PNUSAS394543 SAMN37929613-rid19941303.guided.25, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHDA010000004.1	120799..121668	99.31	870	0						
GCA_032981345.1_PDT001952145.1_genomic.fna	Salmonella_enterica	0.5216	454.622 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHDC010000001.1 Salmonella enterica strain PNUSAS394539 SAMN37929612-rid19939753.denovo.01, whole genome shotgun sequence	583198..583635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHDC010000019.1 Salmonella enterica strain PNUSAS394539 SAMN37929612-rid19939753.guided.12, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHDC010000003.1	544385..545253	99.425	870	0						
GCA_032981365.1_PDT001952120.1_genomic.fna	Salmonella_enterica	0.5215	728.539 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHDE010000001.1 Salmonella enterica strain PNUSAS394542 SAMN37929614-rid19939653.denovo.01, whole genome shotgun sequence	640172..640609	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOHDE010000043.1 Salmonella enterica strain PNUSAS394542 SAMN37929614-rid19939653.guided.15, whole genome shotgun sequence	37484..37921	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHDE010000004.1	94982..95850	99.655	870	0						
GCA_032981385.1_PDT001952144.1_genomic.fna	Salmonella_enterica	0.5208	452.332 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHDD010000001.1 Salmonella enterica strain PNUSAS394540 SAMN37929615-rid19941263.denovo.01, whole genome shotgun sequence	398391..398828	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHDD010000025.1 Salmonella enterica strain PNUSAS394540 SAMN37929615-rid19941263.guided.13, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.39	446 / 445	ABOHDD010000013.1 Salmonella enterica strain PNUSAS394540 SAMN37929615-rid19941263.denovo.15, whole genome shotgun sequence	39786..40230	enterobacteriales	IncFII(Yp)	91.24	217 / 230	ABOHDD010000013.1 Salmonella enterica strain PNUSAS394540 SAMN37929615-rid19941263.denovo.15, whole genome shotgun sequence	40491..40703																																																avrA	ABOHDD010000002.1	496411..497279	99.425	870	0						
GCA_032981405.1_PDT001952114.1_genomic.fna	Salmonella_enterica	0.5212	271.405 KB	5	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOHDH010000001.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325921 SAMN37929711-rid19941083.denovo.01, whole genome shotgun sequence	779768..780205	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOHDH010000034.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325921 SAMN37929711-rid19941083.guided.24, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOHDH010000023.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325921 SAMN37929711-rid19941083.denovo.26, whole genome shotgun sequence	239..369																																																						avrA	ABOHDH010000009.1	39592..40461	99.425	870	0						
GCA_032981445.1_PDT001952110.1_genomic.fna	Salmonella_enterica	0.5214	426.041 KB	4	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHDI010000001.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325920 SAMN37929713-rid19939613.denovo.01, whole genome shotgun sequence	502202..502639	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHDI010000026.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12325920 SAMN37929713-rid19939613.guided.22, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032981465.1_PDT001952105.1_genomic.fna	Salmonella_enterica	0.5204	406.12 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHDJ010000001.1 Salmonella enterica strain PNUSAS394472 SAMN37929129-rid19939583.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHDJ010000028.1 Salmonella enterica strain PNUSAS394472 SAMN37929129-rid19939583.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHDJ010000020.1 Salmonella enterica strain PNUSAS394472 SAMN37929129-rid19939583.denovo.23, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOHDJ010000016.1 Salmonella enterica strain PNUSAS394472 SAMN37929129-rid19939583.denovo.16, whole genome shotgun sequence	4260..4521		enterobacteriales	IncX1	98.93	374 / 374	ABOHDJ010000017.1 Salmonella enterica strain PNUSAS394472 SAMN37929129-rid19939583.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABOHDJ010000006.1	175109..175978	99.54	870	0						
GCA_032981545.1_PDT001952104.1_genomic.fna	Salmonella_enterica	0.5192	312.822 KB	6	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHDK010000004.1 Salmonella enterica strain PNUSAS394470 SAMN37929122-rid19941043.denovo.04, whole genome shotgun sequence	154857..155294	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHDK010000036.1 Salmonella enterica strain PNUSAS394470 SAMN37929122-rid19941043.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHDK010000003.1	145214..146083	98.966	870	0						
GCA_032981625.1_PDT001952097.1_genomic.fna	Salmonella_enterica	0.5195	304.831 KB	6	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHDQ010000004.1 Salmonella enterica strain PNUSAS394251 SAMN37929139-rid19941533.denovo.04, whole genome shotgun sequence	313468..313905	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHDQ010000047.1 Salmonella enterica strain PNUSAS394251 SAMN37929139-rid19941533.guided.39, whole genome shotgun sequence	4496..4933	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABOHDQ010000021.1 Salmonella enterica strain PNUSAS394251 SAMN37929139-rid19941533.denovo.21, whole genome shotgun sequence	51512..52154																																																																	
GCA_032981685.1_PDT001952091.1_genomic.fna	Salmonella_enterica	0.5212	476.89 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHDT010000001.1 Salmonella enterica strain PNUSAS394478 SAMN37929123-rid19939503.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHDT010000027.1 Salmonella enterica strain PNUSAS394478 SAMN37929123-rid19939503.guided.21, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHDT010000018.1 Salmonella enterica strain PNUSAS394478 SAMN37929123-rid19939503.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOHDT010000020.1 Salmonella enterica strain PNUSAS394478 SAMN37929123-rid19939503.denovo.23, whole genome shotgun sequence	3404..3665																																																avrA	ABOHDT010000002.1	553303..554172	99.54	870	0						
GCA_032981705.1_PDT001952088.1_genomic.fna	Salmonella_enterica	0.5205	149.533 KB	9	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_150,thrA_22	464	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_150	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHDW010000002.1 Salmonella enterica strain PNUSAS394475 SAMN37929126-rid19939483.denovo.02, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHDW010000058.1 Salmonella enterica strain PNUSAS394475 SAMN37929126-rid19939483.guided.37, whole genome shotgun sequence	22533..22970	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABOHDW010000025.1 Salmonella enterica strain PNUSAS394475 SAMN37929126-rid19939483.denovo.25, whole genome shotgun sequence	6133..6775																																																																	
GCA_032981765.1_PDT001952086.1_genomic.fna	Salmonella_enterica	0.5207	489.844 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHDY010000001.1 Salmonella enterica strain PNUSAS394250 SAMN37929138-rid19939473.denovo.01, whole genome shotgun sequence	815078..815515	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHDY010000026.1 Salmonella enterica strain PNUSAS394250 SAMN37929138-rid19939473.guided.16, whole genome shotgun sequence	6040..6477	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABOHDY010000012.1 Salmonella enterica strain PNUSAS394250 SAMN37929138-rid19939473.denovo.12, whole genome shotgun sequence	39136..39778	enterobacteriales	IncFII(S)	100	262 / 262	ABOHDY010000015.1 Salmonella enterica strain PNUSAS394250 SAMN37929138-rid19939473.denovo.18, whole genome shotgun sequence	3388..3649		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOHDY010000009.1 Salmonella enterica strain PNUSAS394250 SAMN37929138-rid19939473.denovo.09, whole genome shotgun sequence	84281..84422		enterobacteriales	IncX1	98.66	374 / 374	ABOHDY010000016.1 Salmonella enterica strain PNUSAS394250 SAMN37929138-rid19939473.denovo.19, whole genome shotgun sequence	1442..1815																																		avrA	ABOHDY010000002.1	553356..554225	99.54	870	0						
GCA_032981805.1_PDT001952084.1_genomic.fna	Salmonella_enterica	0.5216	298.233 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHDZ010000001.1 Salmonella enterica strain PNUSAS394473 SAMN37929128-rid19940973.denovo.01, whole genome shotgun sequence	414165..414602	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHDZ010000037.1 Salmonella enterica strain PNUSAS394473 SAMN37929128-rid19940973.guided.23, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHDZ010000009.1	193396..194264	99.195	870	0						
GCA_032981905.1_PDT001952075.1_genomic.fna	Salmonella_enterica	0.5216	359.483 KB	6	aroC_341,dnaN_11,hemD_8,hisD_404,purE_61,sucA_161,thrA_341	1291	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_341	dnaN	100	100	dnaN_11	hemD	100	100	hemD_8	hisD	100	100	hisD_404	purE	100	100	purE_61	sucA	100	100	sucA_161	thrA	100	100	thrA_341	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOHEE010000001.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325918 SAMN37929622-rid19939403.denovo.01, whole genome shotgun sequence	163439..163876	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOHEE010000044.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325918 SAMN37929622-rid19939403.guided.22, whole genome shotgun sequence	16445..16882	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHEE010000008.1	94379..95248	98.966	870	0						
GCA_032981935.1_PDT001952329.1_genomic.fna	Salmonella_enterica	0.5213	412.519 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHCH010000001.1 Salmonella enterica strain PNUSAS394838 SAMN37932649-rid19942253.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHCH010000025.1 Salmonella enterica strain PNUSAS394838 SAMN37932649-rid19942253.guided.17, whole genome shotgun sequence	24926..25363	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHCH010000019.1 Salmonella enterica strain PNUSAS394838 SAMN37932649-rid19942253.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOHCH010000016.1 Salmonella enterica strain PNUSAS394838 SAMN37932649-rid19942253.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABOHCH010000006.1	175197..176066	99.54	870	0						
GCA_032981955.1_PDT001952078.1_genomic.fna	Salmonella_enterica	0.5215	262.989 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHEH010000001.1 Salmonella enterica strain PNUSAS394471 SAMN37929130-rid19939423.denovo.01, whole genome shotgun sequence	380094..380531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHEH010000060.1 Salmonella enterica strain PNUSAS394471 SAMN37929130-rid19939423.guided.40, whole genome shotgun sequence	5051..5488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOHEH010000024.1 Salmonella enterica strain PNUSAS394471 SAMN37929130-rid19939423.denovo.24, whole genome shotgun sequence	44745..45387	enterobacteriales	IncFII(S)	100	262 / 262	ABOHEH010000024.1 Salmonella enterica strain PNUSAS394471 SAMN37929130-rid19939423.denovo.24, whole genome shotgun sequence	29399..29660																																																avrA	ABOHEH010000008.1	94133..95002	99.885	870	0						
GCA_032982005.1_PDT001952080.1_genomic.fna	Salmonella_enterica	0.5214	400.801 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHEG010000001.1 Salmonella enterica strain PNUSAS394476 SAMN37929125-rid19939433.denovo.01, whole genome shotgun sequence	412644..413081	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHEG010000029.1 Salmonella enterica strain PNUSAS394476 SAMN37929125-rid19939433.guided.21, whole genome shotgun sequence	10431..10868	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHEG010000015.1	39478..40346	99.425	870	0						
GCA_032982045.1_PDT001952076.1_genomic.fna	Salmonella_enterica	0.5215	194.251 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	3	acrB_p.R717L,gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHEI010000001.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOHEI010000025.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.denovo.28, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHEI010000025.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.denovo.28, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOHEI010000036.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.denovo.41, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOHEI010000036.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.denovo.41, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABOHEI010000053.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.guided.27, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHEI010000053.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.guided.27, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOHEI010000054.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.guided.38, whole genome shotgun sequence	4845..5282	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOHEI010000055.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.guided.39, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOHEI010000055.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.guided.39, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOHEI010000040.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.denovo.46, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOHEI010000056.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.guided.44, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABOHEI010000025.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.denovo.28, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOHEI010000053.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.guided.27, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOHEI010000025.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.denovo.28, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOHEI010000053.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.guided.27, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								acrB p.R717L	CGA -> CTA	R -> L	Azithromycin	-	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468						enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOHEI010000028.1 Salmonella enterica strain PNUSAS394474 SAMN37929127-rid19939413.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABOHEI010000002.1	94795..95664	99.655	870	0						
GCA_032982065.1_PDT001952074.1_genomic.fna	Salmonella_enterica	0.5187	231.818 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHEL010000001.1 Salmonella enterica strain PNUSAS394477 SAMN37929124-rid19940933.denovo.01, whole genome shotgun sequence	104542..104979	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.04	408/438	ABOHEL010000051.1 Salmonella enterica strain PNUSAS394477 SAMN37929124-rid19940933.guided.31, whole genome shotgun sequence	1..408	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOHEL010000010.1 Salmonella enterica strain PNUSAS394477 SAMN37929124-rid19940933.denovo.10, whole genome shotgun sequence	27818..28240	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOHEL010000053.1 Salmonella enterica strain PNUSAS394477 SAMN37929124-rid19940933.guided.36, whole genome shotgun sequence	6676..7098	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHEL010000016.1	67021..67890	99.195	870	0						
GCA_032982125.1_PDT001952069.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHEN010000001.1 Salmonella enterica strain PNUSAS394331 SAMN37926919-rid19940913.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHEN010000022.1 Salmonella enterica strain PNUSAS394331 SAMN37926919-rid19940913.guided.16, whole genome shotgun sequence	8799..9236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHEN010000016.1 Salmonella enterica strain PNUSAS394331 SAMN37926919-rid19940913.denovo.17, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOHEN010000013.1 Salmonella enterica strain PNUSAS394331 SAMN37926919-rid19940913.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABOHEN010000002.1	553636..554505	99.54	870	0						
GCA_032982145.1_PDT001952068.1_genomic.fna	Salmonella_enterica	0.5214	534.076 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHEO010000001.1 Salmonella enterica strain PNUSAS394311 SAMN37926904-rid19939373.denovo.01, whole genome shotgun sequence	385721..386158	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHEO010000029.1 Salmonella enterica strain PNUSAS394311 SAMN37926904-rid19939373.guided.11, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHEO010000003.1	149691..150559	99.425	870	0						
GCA_032982165.1_PDT001952067.1_genomic.fna	Salmonella_enterica	0.5202	570.634 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHEP010000001.1 Salmonella enterica strain PNUSAS394318 SAMN37926915-rid19940903.denovo.01, whole genome shotgun sequence	414847..415284	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHEP010000022.1 Salmonella enterica strain PNUSAS394318 SAMN37926915-rid19940903.guided.14, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032982185.1_PDT001952066.1_genomic.fna	Salmonella_enterica	0.5225	270.523 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHEQ010000004.1 Salmonella enterica strain PNUSAS394321 SAMN37926914-rid19939363.denovo.04, whole genome shotgun sequence	224192..224629	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHEQ010000031.1 Salmonella enterica strain PNUSAS394321 SAMN37926914-rid19939363.guided.15, whole genome shotgun sequence	2643..3080	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032982205.1_PDT001952065.1_genomic.fna	Salmonella_enterica	0.5206	217.317 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	5	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaTEM-1B,blaCMY-2,blaTEM-1B,sul2,sul2,tet(A),tet(A)	0		4	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col156,IncC,IncFII(pHN7A8)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHER010000001.1 Salmonella enterica strain PNUSAS394335 SAMN37926921-rid19939353.denovo.01, whole genome shotgun sequence	358434..358871	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHER010000067.1 Salmonella enterica strain PNUSAS394335 SAMN37926921-rid19939353.guided.36, whole genome shotgun sequence	31695..32132	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOHER010000026.1 Salmonella enterica strain PNUSAS394335 SAMN37926921-rid19939353.denovo.27, whole genome shotgun sequence	15163..16308	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-1B	100	861/861	ABOHER010000033.1 Salmonella enterica strain PNUSAS394335 SAMN37926921-rid19939353.denovo.34, whole genome shotgun sequence	17782..18642	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOHER010000068.1 Salmonella enterica strain PNUSAS394335 SAMN37926921-rid19939353.guided.41, whole genome shotgun sequence	13901..15046	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-1B	100	861/861	ABOHER010000071.1 Salmonella enterica strain PNUSAS394335 SAMN37926921-rid19939353.guided.55, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOHER010000044.1 Salmonella enterica strain PNUSAS394335 SAMN37926921-rid19939353.denovo.48, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOHER010000070.1 Salmonella enterica strain PNUSAS394335 SAMN37926921-rid19939353.guided.49, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOHER010000044.1 Salmonella enterica strain PNUSAS394335 SAMN37926921-rid19939353.denovo.48, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOHER010000070.1 Salmonella enterica strain PNUSAS394335 SAMN37926921-rid19939353.guided.49, whole genome shotgun sequence	4544..5743	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABOHER010000048.1 Salmonella enterica strain PNUSAS394335 SAMN37926921-rid19939353.denovo.53, whole genome shotgun sequence	1326..1445	enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOHER010000050.1 Salmonella enterica strain PNUSAS394335 SAMN37926921-rid19939353.denovo.56, whole genome shotgun sequence	371..501		enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOHER010000051.1 Salmonella enterica strain PNUSAS394335 SAMN37926921-rid19939353.denovo.57, whole genome shotgun sequence	3134..3264		enterobacteriales	Col156	98.03	152 / 154	ABOHER010000052.1 Salmonella enterica strain PNUSAS394335 SAMN37926921-rid19939353.denovo.58, whole genome shotgun sequence	990..1141		enterobacteriales	IncC	100	417 / 417	ABOHER010000030.1 Salmonella enterica strain PNUSAS394335 SAMN37926921-rid19939353.denovo.31, whole genome shotgun sequence	38349..38765		enterobacteriales	IncFII(pHN7A8)	96.92	260 / 260	ABOHER010000033.1 Salmonella enterica strain PNUSAS394335 SAMN37926921-rid19939353.denovo.34, whole genome shotgun sequence	25546..25805																				avrA	ABOHER010000006.1	78142..79011	99.885	870	0						
GCA_032982225.1_PDT001952063.1_genomic.fna	Salmonella_enterica	0.5219	496.516 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHET010000001.1 Salmonella enterica strain PNUSAS394314 SAMN37926903-rid19939343.denovo.01, whole genome shotgun sequence	222281..222718	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHET010000026.1 Salmonella enterica strain PNUSAS394314 SAMN37926903-rid19939343.guided.12, whole genome shotgun sequence	44311..44748	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHET010000002.1	146984..147853	98.966	870	0						
GCA_032982245.1_PDT001952064.1_genomic.fna	Salmonella_enterica	0.522	366.725 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHES010000001.1 Salmonella enterica strain PNUSAS394322 SAMN37926918-rid19940893.denovo.01, whole genome shotgun sequence	558424..558861	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHES010000029.1 Salmonella enterica strain PNUSAS394322 SAMN37926918-rid19940893.guided.19, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHES010000009.1	184389..185257	99.195	870	0						
GCA_032982265.1_PDT001952062.1_genomic.fna	Salmonella_enterica	0.5218	748.162 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHEU010000001.1 Salmonella enterica strain PNUSAS394326 SAMN37926910-rid19940883.denovo.01, whole genome shotgun sequence	395257..395694	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOHEU010000016.1 Salmonella enterica strain PNUSAS394326 SAMN37926910-rid19940883.guided.14, whole genome shotgun sequence	8492..8929	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHEU010000002.1	573716..574584	99.655	870	0						
GCA_032982285.1_PDT001952060.1_genomic.fna	Salmonella_enterica	0.5217	426.876 KB	4	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440II	aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHEW010000001.1 Salmonella enterica strain PNUSAS394333 SAMN37926900-rid19939323.denovo.01, whole genome shotgun sequence	592865..593302	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHEW010000023.1 Salmonella enterica strain PNUSAS394333 SAMN37926900-rid19939323.guided.16, whole genome shotgun sequence	8865..9302	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440II	97.16	282 / 282	ABOHEW010000015.1 Salmonella enterica strain PNUSAS394333 SAMN37926900-rid19939323.denovo.18, whole genome shotgun sequence	5136..5417																																																																	
GCA_032982305.1_PDT001952061.1_genomic.fna	Salmonella_enterica	0.5218	444.611 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHEV010000001.1 Salmonella enterica strain PNUSAS394327 SAMN37926911-rid19939333.denovo.01, whole genome shotgun sequence	790265..790702	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHEV010000027.1 Salmonella enterica strain PNUSAS394327 SAMN37926911-rid19939333.guided.12, whole genome shotgun sequence	30326..30763	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHEV010000002.1	28825..29694	98.966	870	0						
GCA_032982325.1_PDT001952057.1_genomic.fna	Salmonella_enterica	0.5216	428.167 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHEZ010000001.1 Salmonella enterica strain PNUSAS394338 SAMN37926920-rid19940863.denovo.01, whole genome shotgun sequence	486957..487394	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHEZ010000024.1 Salmonella enterica strain PNUSAS394338 SAMN37926920-rid19940863.guided.21, whole genome shotgun sequence	3994..4431	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHEZ010000004.1	181803..182671	99.425	870	0						
GCA_032982345.1_PDT001952059.1_genomic.fna	Salmonella_enterica	0.52	469.75 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHEX010000001.1 Salmonella enterica strain PNUSAS394319 SAMN37926916-rid19940873.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHEX010000029.1 Salmonella enterica strain PNUSAS394319 SAMN37926916-rid19940873.guided.20, whole genome shotgun sequence	939..1376	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHEX010000016.1 Salmonella enterica strain PNUSAS394319 SAMN37926916-rid19940873.denovo.17, whole genome shotgun sequence	48660..49302	enterobacteriales	IncFII(S)	100	262 / 262	ABOHEX010000016.1 Salmonella enterica strain PNUSAS394319 SAMN37926916-rid19940873.denovo.17, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABOHEX010000018.1 Salmonella enterica strain PNUSAS394319 SAMN37926916-rid19940873.denovo.19, whole genome shotgun sequence	6868..7241																																									avrA	ABOHEX010000013.1	28843..29712	99.54	870	0						
GCA_032982365.1_PDT001952058.1_genomic.fna	Salmonella_enterica	0.5214	434.686 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHEY010000001.1 Salmonella enterica strain PNUSAS394312 SAMN37926902-rid19939313.denovo.01, whole genome shotgun sequence	396158..396595	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHEY010000030.1 Salmonella enterica strain PNUSAS394312 SAMN37926902-rid19939313.guided.15, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032982385.1_PDT001952056.1_genomic.fna	Salmonella_enterica	0.5211	321.447 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHFA010000002.1 Salmonella enterica strain PNUSAS394325 SAMN37926912-rid19939303.denovo.02, whole genome shotgun sequence	253184..253621	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHFA010000030.1 Salmonella enterica strain PNUSAS394325 SAMN37926912-rid19939303.guided.20, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOHFA010000018.1 Salmonella enterica strain PNUSAS394325 SAMN37926912-rid19939303.denovo.18, whole genome shotgun sequence	34958..35491																																																						avrA	ABOHFA010000001.1	557276..558144	99.425	870	0						
GCA_032982405.1_PDT001952055.1_genomic.fna	Salmonella_enterica	0.5202	427.854 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHFC010000001.1 Salmonella enterica strain PNUSAS394323 SAMN37926909-rid19939293.denovo.01, whole genome shotgun sequence	400383..400820	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHFC010000040.1 Salmonella enterica strain PNUSAS394323 SAMN37926909-rid19939293.guided.13, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOHFC010000013.1 Salmonella enterica strain PNUSAS394323 SAMN37926909-rid19939293.denovo.14, whole genome shotgun sequence	34930..35463																																																						avrA	ABOHFC010000003.1	496853..497721	99.425	870	0						
GCA_032982425.1_PDT001952054.1_genomic.fna	Salmonella_enterica	0.5213	521.314 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHFB010000001.1 Salmonella enterica strain PNUSAS394320 SAMN37926917-rid19940853.denovo.01, whole genome shotgun sequence	112415..112852	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHFB010000024.1 Salmonella enterica strain PNUSAS394320 SAMN37926917-rid19940853.guided.15, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHFB010000003.1	149864..150734	99.426	871	0						
GCA_032982445.1_PDT001952053.1_genomic.fna	Salmonella_enterica	0.5211	321.754 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHFD010000001.1 Salmonella enterica strain PNUSAS394302 SAMN37926884-rid19939283.denovo.01, whole genome shotgun sequence	415418..415855	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHFD010000031.1 Salmonella enterica strain PNUSAS394302 SAMN37926884-rid19939283.guided.13, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHFD010000009.1	140447..141316	99.425	870	0						
GCA_032982465.1_PDT001952050.1_genomic.fna	Salmonella_enterica	0.5216	273.732 KB	6	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHFE010000001.1 Salmonella enterica strain PNUSAS394310 SAMN37926883-rid19939263.denovo.01, whole genome shotgun sequence	455723..456160	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHFE010000055.1 Salmonella enterica strain PNUSAS394310 SAMN37926883-rid19939263.guided.34, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032982485.1_PDT001952049.1_genomic.fna	Salmonella_enterica	0.5204	399.687 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHFF010000002.1 Salmonella enterica strain PNUSAS394297 SAMN37926892-rid19940833.denovo.02, whole genome shotgun sequence	422627..423064	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHFF010000029.1 Salmonella enterica strain PNUSAS394297 SAMN37926892-rid19940833.guided.18, whole genome shotgun sequence	10545..10982	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOHFF010000015.1 Salmonella enterica strain PNUSAS394297 SAMN37926892-rid19940833.denovo.15, whole genome shotgun sequence	34930..35463																																																						avrA	ABOHFF010000003.1	394804..395672	99.425	870	0						
GCA_032982505.1_PDT001952047.1_genomic.fna	Salmonella_enterica	0.5209	440.784 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHFG010000001.1 Salmonella enterica strain PNUSAS394301 SAMN37926886-rid19940823.denovo.01, whole genome shotgun sequence	385228..385665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHFG010000027.1 Salmonella enterica strain PNUSAS394301 SAMN37926886-rid19940823.guided.10, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHFG010000003.1	149854..150722	99.425	870	0						
GCA_032982525.1_PDT001952046.1_genomic.fna	Salmonella_enterica	0.5209	282.835 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHFH010000001.1 Salmonella enterica strain PNUSAS394306 SAMN37926908-rid19939243.denovo.01, whole genome shotgun sequence	570092..570529	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHFH010000036.1 Salmonella enterica strain PNUSAS394306 SAMN37926908-rid19939243.denovo.41, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHFH010000036.1 Salmonella enterica strain PNUSAS394306 SAMN37926908-rid19939243.denovo.41, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOHFH010000052.1 Salmonella enterica strain PNUSAS394306 SAMN37926908-rid19939243.guided.13, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHFH010000056.1 Salmonella enterica strain PNUSAS394306 SAMN37926908-rid19939243.guided.40, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHFH010000056.1 Salmonella enterica strain PNUSAS394306 SAMN37926908-rid19939243.guided.40, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOHFH010000043.1 Salmonella enterica strain PNUSAS394306 SAMN37926908-rid19939243.denovo.49, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOHFH010000057.1 Salmonella enterica strain PNUSAS394306 SAMN37926908-rid19939243.guided.48, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOHFH010000036.1 Salmonella enterica strain PNUSAS394306 SAMN37926908-rid19939243.denovo.41, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOHFH010000056.1 Salmonella enterica strain PNUSAS394306 SAMN37926908-rid19939243.guided.40, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOHFH010000031.1 Salmonella enterica strain PNUSAS394306 SAMN37926908-rid19939243.denovo.34, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOHFH010000054.1 Salmonella enterica strain PNUSAS394306 SAMN37926908-rid19939243.guided.33, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABOHFH010000002.1	434659..435528	99.885	870	0						
GCA_032982545.1_PDT001952045.1_genomic.fna	Salmonella_enterica	0.521	406.451 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHFI010000001.1 Salmonella enterica strain PNUSAS394337 SAMN37926899-rid19940813.denovo.01, whole genome shotgun sequence	770313..770750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHFI010000032.1 Salmonella enterica strain PNUSAS394337 SAMN37926899-rid19940813.guided.22, whole genome shotgun sequence	4008..4445	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHFI010000021.1 Salmonella enterica strain PNUSAS394337 SAMN37926899-rid19940813.denovo.23, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOHFI010000022.1 Salmonella enterica strain PNUSAS394337 SAMN37926899-rid19940813.denovo.24, whole genome shotgun sequence	3446..3707																																																avrA	ABOHFI010000002.1	585358..586227	99.54	870	0						
GCA_032982575.1_PDT001952043.1_genomic.fna	Salmonella_enterica	0.5212	728.583 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,qnrB19,qnrB19,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHFK010000001.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHFK010000013.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.denovo.16, whole genome shotgun sequence	2501..3337	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHFK010000013.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.denovo.16, whole genome shotgun sequence	3337..4140	Streptomycin	AF321551	aac(6')-Iaa	99.54	438/438	ABOHFK010000033.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.guided.11, whole genome shotgun sequence	39061..39498	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHFK010000035.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.guided.15, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHFK010000035.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.guided.15, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOHFK010000013.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.denovo.16, whole genome shotgun sequence	33357..34502	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOHFK010000035.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.guided.15, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	97.91	1007/1215	ABOHFK010000022.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.denovo.26, whole genome shotgun sequence	3278..4284	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABOHFK010000037.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABOHFK010000023.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.denovo.29, whole genome shotgun sequence	1805..2449	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOHFK010000038.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.guided.28, whole genome shotgun sequence	532..1176	Ciprofloxacin	EU432277	sul2	100	816/816	ABOHFK010000013.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.denovo.16, whole genome shotgun sequence	4201..5016	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOHFK010000035.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.guided.15, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1240/1275	ABOHFK010000013.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.denovo.16, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOHFK010000035.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.guided.15, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOHFK010000023.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.denovo.29, whole genome shotgun sequence	1149..1279	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOHFK010000038.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.guided.28, whole genome shotgun sequence	2574..2704		enterobacteriales	IncC	100	417 / 417	ABOHFK010000011.1 Salmonella enterica strain PNUSAS394300 SAMN37926885-rid19939233.denovo.12, whole genome shotgun sequence	17493..17909																																									avrA	ABOHFK010000002.1	561942..562812	99.656	871	0						
GCA_032982605.1_PDT001952041.1_genomic.fna	Salmonella_enterica	0.5211	313.736 KB	6	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHFN010000005.1 Salmonella enterica strain PNUSAS394296 SAMN37926890-rid19939223.denovo.05, whole genome shotgun sequence	153800..154237	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHFN010000037.1 Salmonella enterica strain PNUSAS394296 SAMN37926890-rid19939223.guided.13, whole genome shotgun sequence	42396..42833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOHFN010000014.1 Salmonella enterica strain PNUSAS394296 SAMN37926890-rid19939223.denovo.15, whole genome shotgun sequence	44412..44553																																																																	
GCA_032982625.1_PDT001952037.1_genomic.fna	Salmonella_enterica	0.5213	535.917 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHFP010000005.1 Salmonella enterica strain PNUSAS394303 SAMN37926887-rid19940763.denovo.05, whole genome shotgun sequence	324723..325160	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHFP010000035.1 Salmonella enterica strain PNUSAS394303 SAMN37926887-rid19940763.guided.17, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHFP010000003.1	544677..545545	99.425	870	0						
GCA_032982645.1_PDT001952042.1_genomic.fna	Salmonella_enterica	0.5202	587.112 KB	4	aroC_13,dnaN_208,hemD_49,hisD_719,purE_33,sucA_16,thrA_4	2940	38:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2	aroC	100	100	aroC_13	dnaN	100	100	dnaN_208	hemD	100	100	hemD_49	hisD	100	100	hisD_719	purE	100	100	purE_33	sucA	100	100	sucA_16	thrA	100	100	thrA_4	38	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Freetown		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHFL010000001.1 Salmonella enterica strain PNUSAS394309 SAMN37926880-rid19940793.denovo.01, whole genome shotgun sequence	82264..82701	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHFL010000033.1 Salmonella enterica strain PNUSAS394309 SAMN37926880-rid19940793.guided.15, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2	100	324 / 324	ABOHFL010000017.1 Salmonella enterica strain PNUSAS394309 SAMN37926880-rid19940793.denovo.19, whole genome shotgun sequence	29421..29744																																																						avrA	ABOHFL010000004.1	152802..153670	99.31	870	0						
GCA_032982665.1_PDT001952038.1_genomic.fna	Salmonella_enterica	0.5206	403.258 KB	4	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440II,IncI2(Delta)	aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHFO010000001.1 Salmonella enterica strain PNUSAS394336 SAMN37926897-rid19939213.denovo.01, whole genome shotgun sequence	592865..593302	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHFO010000030.1 Salmonella enterica strain PNUSAS394336 SAMN37926897-rid19939213.guided.19, whole genome shotgun sequence	4797..5234	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440II	97.16	282 / 282	ABOHFO010000018.1 Salmonella enterica strain PNUSAS394336 SAMN37926897-rid19939213.denovo.21, whole genome shotgun sequence	5136..5417	enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABOHFO010000015.1 Salmonella enterica strain PNUSAS394336 SAMN37926897-rid19939213.denovo.15, whole genome shotgun sequence	28113..28434																																																											
GCA_032982685.1_PDT001952040.1_genomic.fna	Salmonella_enterica	0.5201	321.299 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pSL483	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHFM010000001.1 Salmonella enterica strain PNUSAS394316 SAMN37926905-rid19940783.denovo.01, whole genome shotgun sequence	415414..415851	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHFM010000038.1 Salmonella enterica strain PNUSAS394316 SAMN37926905-rid19940783.guided.23, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pSL483	99.7	995 / 995	ABOHFM010000022.1 Salmonella enterica strain PNUSAS394316 SAMN37926905-rid19940783.denovo.24, whole genome shotgun sequence	22340..23334																																																						avrA	ABOHFM010000015.1	39468..40337	99.425	870	0						
GCA_032982705.1_PDT001952034.1_genomic.fna	Salmonella_enterica	0.5221	205.999 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHFQ010000001.1 Salmonella enterica strain PNUSAS394315 SAMN37926906-rid19940743.denovo.01, whole genome shotgun sequence	368587..369024	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHFQ010000052.1 Salmonella enterica strain PNUSAS394315 SAMN37926906-rid19940743.guided.27, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_032982725.1_PDT001952036.1_genomic.fna	Salmonella_enterica	0.5213	406.416 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHFR010000001.1 Salmonella enterica strain PNUSAS394334 SAMN37926898-rid19939203.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHFR010000027.1 Salmonella enterica strain PNUSAS394334 SAMN37926898-rid19939203.guided.17, whole genome shotgun sequence	30242..30679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHFR010000018.1 Salmonella enterica strain PNUSAS394334 SAMN37926898-rid19939203.denovo.20, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOHFR010000019.1 Salmonella enterica strain PNUSAS394334 SAMN37926898-rid19939203.denovo.22, whole genome shotgun sequence	3423..3684																																																avrA	ABOHFR010000002.1	553187..554056	99.54	870	0						
GCA_032982745.1_PDT001952033.1_genomic.fna	Salmonella_enterica	0.5199	335.03 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOHFU010000001.1 Salmonella enterica strain PNUSAS394299 SAMN37926722-rid19939193.denovo.01, whole genome shotgun sequence	77725..78162	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOHFU010000061.1 Salmonella enterica strain PNUSAS394299 SAMN37926722-rid19939193.guided.19, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABOHFU010000023.1 Salmonella enterica strain PNUSAS394299 SAMN37926722-rid19939193.denovo.25, whole genome shotgun sequence	12562..13204	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABOHFU010000022.1 Salmonella enterica strain PNUSAS394299 SAMN37926722-rid19939193.denovo.24, whole genome shotgun sequence	21066..21658																																																avrA	ABOHFU010000009.1	140559..141427	99.425	870	0						
GCA_032982765.1_PDT001952027.1_genomic.fna	Salmonella_enterica	0.5218	682.831 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHFW010000001.1 Salmonella enterica strain PNUSAS394332 SAMN37926896-rid19940713.denovo.01, whole genome shotgun sequence	510589..511026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHFW010000022.1 Salmonella enterica strain PNUSAS394332 SAMN37926896-rid19940713.guided.17, whole genome shotgun sequence	12406..12843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHFW010000002.1	544607..545475	99.425	870	0						
GCA_032983865.1_PDT001952048.1_genomic.fna	Salmonella_enterica	0.5216	274.009 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOHGI010000013.1 Salmonella enterica strain PNUSAS394304 SAMN37926888-rid19939253.denovo.13, whole genome shotgun sequence	70835..71272	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOHGI010000032.1 Salmonella enterica strain PNUSAS394304 SAMN37926888-rid19939253.guided.22, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHGI010000001.1	131917..132786	98.966	870	0						
GCA_032983905.1_PDT001952039.1_genomic.fna	Salmonella_enterica	0.5222	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHGJ010000001.1 Salmonella enterica strain PNUSAS394292 SAMN37926725-rid19940773.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHGJ010000028.1 Salmonella enterica strain PNUSAS394292 SAMN37926725-rid19940773.guided.14, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHGJ010000002.1	129893..130762	98.851	870	0						
GCA_032983925.1_PDT001952031.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHGL010000001.1 Salmonella enterica strain PNUSAS394295 SAMN37926889-rid19939183.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHGL010000027.1 Salmonella enterica strain PNUSAS394295 SAMN37926889-rid19939183.guided.14, whole genome shotgun sequence	41899..42336	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHGL010000015.1 Salmonella enterica strain PNUSAS394295 SAMN37926889-rid19939183.denovo.17, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOHGL010000015.1 Salmonella enterica strain PNUSAS394295 SAMN37926889-rid19939183.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABOHGL010000002.1	506094..506963	99.54	870	0						
GCA_032983945.1_PDT001952032.1_genomic.fna	Salmonella_enterica	0.5214	609.507 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHGK010000002.1 Salmonella enterica strain PNUSAS394313 SAMN37926901-rid19940733.denovo.02, whole genome shotgun sequence	645054..645491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOHGK010000027.1 Salmonella enterica strain PNUSAS394313 SAMN37926901-rid19940733.guided.12, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHGK010000003.1	514638..515506	99.54	870	0						
GCA_032983985.1_PDT001952026.1_genomic.fna	Salmonella_enterica	0.5222	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHGM010000001.1 Salmonella enterica strain PNUSAS394305 SAMN37926881-rid19939163.denovo.01, whole genome shotgun sequence	790265..790702	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHGM010000028.1 Salmonella enterica strain PNUSAS394305 SAMN37926881-rid19939163.guided.16, whole genome shotgun sequence	4819..5256	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHGM010000002.1	146984..147853	98.966	870	0						
GCA_032984005.1_PDT001952025.1_genomic.fna	Salmonella_enterica	0.5204	407.898 KB	5	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHGO010000007.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.denovo.07, whole genome shotgun sequence	145366..145803	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOHGO010000028.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.denovo.33, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOHGO010000037.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.guided.13, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOHGO010000041.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.guided.31, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOHGO010000028.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.denovo.33, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOHGO010000041.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.guided.31, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOHGO010000026.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.denovo.30, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOHGO010000040.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.guided.29, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOHGO010000024.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.denovo.27, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOHGO010000042.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.guided.35, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOHGO010000028.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.denovo.33, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOHGO010000041.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.guided.31, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOHGO010000032.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.denovo.40, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOHGO010000044.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.guided.39, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOHGO010000024.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.denovo.27, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOHGO010000043.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.guided.37, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOHGO010000024.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.denovo.27, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOHGO010000043.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.guided.37, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOHGO010000022.1 Salmonella enterica strain PNUSAS394308 SAMN37926907-rid19940703.denovo.25, whole genome shotgun sequence	8402..8652																																																						avrA	ABOHGO010000001.1	553485..554354	99.77	870	0						
GCA_032984025.1_PDT001952028.1_genomic.fna	Salmonella_enterica	0.5222	348.567 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHGN010000001.1 Salmonella enterica strain PNUSAS394307 SAMN37926882-rid19939173.denovo.01, whole genome shotgun sequence	222294..222731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHGN010000033.1 Salmonella enterica strain PNUSAS394307 SAMN37926882-rid19939173.guided.18, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOHGN010000020.1 Salmonella enterica strain PNUSAS394307 SAMN37926882-rid19939173.denovo.24, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOHGN010000035.1 Salmonella enterica strain PNUSAS394307 SAMN37926882-rid19939173.guided.23, whole genome shotgun sequence	4227..4871	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOHGN010000020.1 Salmonella enterica strain PNUSAS394307 SAMN37926882-rid19939173.denovo.24, whole genome shotgun sequence	1519..1649	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOHGN010000035.1 Salmonella enterica strain PNUSAS394307 SAMN37926882-rid19939173.guided.23, whole genome shotgun sequence	3571..3701																																																avrA	ABOHGN010000002.1	129887..130756	98.966	870	0						
GCA_032984035.1_PDT001952005.1_genomic.fna	Salmonella_enterica	0.5209	443.039 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col156,IncI1-I(Alpha)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHGT010000001.1 Salmonella enterica strain PNUSAS391763 SAMN37926522-rid19940623.denovo.01, whole genome shotgun sequence	1146145..1146582	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHGT010000030.1 Salmonella enterica strain PNUSAS391763 SAMN37926522-rid19940623.guided.21, whole genome shotgun sequence	915..1352	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.05	154 / 154	ABOHGT010000019.1 Salmonella enterica strain PNUSAS391763 SAMN37926522-rid19940623.denovo.22, whole genome shotgun sequence	621..774	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOHGT010000011.1 Salmonella enterica strain PNUSAS391763 SAMN37926522-rid19940623.denovo.11, whole genome shotgun sequence	16302..16443																																																avrA	ABOHGT010000009.1	150695..151565	99.196	871	0						
GCA_032984165.1_PDT001951964.1_genomic.fna	Salmonella_enterica	0.5202	287.563 KB	6	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	7	aac(6')-Iaa,aadA1,aadA2,aac(6')-Iaa,aadA1,aadA2,blaTEM-1B,blaTEM-1B,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOHGZ010000003.1 Salmonella enterica strain PNUSAS388818 SAMN37926520-rid19938003.denovo.03, whole genome shotgun sequence	66622..67059	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOHGZ010000027.1 Salmonella enterica strain PNUSAS388818 SAMN37926520-rid19938003.denovo.31, whole genome shotgun sequence	507..1298	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOHGZ010000028.1 Salmonella enterica strain PNUSAS388818 SAMN37926520-rid19938003.denovo.33, whole genome shotgun sequence	1165..1956	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	97.03	438/438	ABOHGZ010000047.1 Salmonella enterica strain PNUSAS388818 SAMN37926520-rid19938003.guided.23, whole genome shotgun sequence	16444..16881	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOHGZ010000049.1 Salmonella enterica strain PNUSAS388818 SAMN37926520-rid19938003.guided.30, whole genome shotgun sequence	548..1339	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOHGZ010000050.1 Salmonella enterica strain PNUSAS388818 SAMN37926520-rid19938003.guided.32, whole genome shotgun sequence	3660..4451	Spectinomycin, Streptomycin	JQ364967	blaTEM-1B	100	861/861	ABOHGZ010000034.1 Salmonella enterica strain PNUSAS388818 SAMN37926520-rid19938003.denovo.40, whole genome shotgun sequence	901..1761	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOHGZ010000052.1 Salmonella enterica strain PNUSAS388818 SAMN37926520-rid19938003.guided.41, whole genome shotgun sequence	1030..1890	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul3	100	792/792	ABOHGZ010000027.1 Salmonella enterica strain PNUSAS388818 SAMN37926520-rid19938003.denovo.31, whole genome shotgun sequence	2980..3771	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOHGZ010000049.1 Salmonella enterica strain PNUSAS388818 SAMN37926520-rid19938003.guided.30, whole genome shotgun sequence	3021..3812	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABOHGZ010000006.1 Salmonella enterica strain PNUSAS388818 SAMN37926520-rid19938003.denovo.06, whole genome shotgun sequence	282829..284028	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOHGZ010000051.1 Salmonella enterica strain PNUSAS388818 SAMN37926520-rid19938003.guided.34, whole genome shotgun sequence	1125..2324	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABOHGZ010000028.1 Salmonella enterica strain PNUSAS388818 SAMN37926520-rid19938003.denovo.33, whole genome shotgun sequence	2364..2861	Trimethoprim	AM040708	dfrA12	100	498/498	ABOHGZ010000050.1 Salmonella enterica strain PNUSAS388818 SAMN37926520-rid19938003.guided.32, whole genome shotgun sequence	2755..3252	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOHGZ010000030.1 Salmonella enterica strain PNUSAS388818 SAMN37926520-rid19938003.denovo.36, whole genome shotgun sequence	3134..3264	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOHGZ010000033.1 Salmonella enterica strain PNUSAS388818 SAMN37926520-rid19938003.denovo.39, whole genome shotgun sequence	186..316																																																avrA	ABOHGZ010000001.1	101741..102610	99.195	870	0						
GCA_032984225.1_PDT001951963.1_genomic.fna	Salmonella_enterica	0.5216	683.032 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHHA010000001.1 Salmonella enterica strain PNUSAS388821 SAMN37926517-rid19938903.denovo.01, whole genome shotgun sequence	631441..631878	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHHA010000018.1 Salmonella enterica strain PNUSAS388821 SAMN37926517-rid19938903.guided.14, whole genome shotgun sequence	4035..4472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHHA010000002.1	544607..545475	99.425	870	0						
GCA_032984265.1_PDT001951962.1_genomic.fna	Salmonella_enterica	0.5223	728.644 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHHB010000001.1 Salmonella enterica strain PNUSAS388822 SAMN37926516-rid19937993.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOHHB010000024.1 Salmonella enterica strain PNUSAS388822 SAMN37926516-rid19937993.guided.17, whole genome shotgun sequence	4791..5228	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHHB010000003.1	553633..554502	99.655	870	0						
GCA_032985865.1_PDT001952460.1_genomic.fna	Salmonella_enterica	0.5214	207.444 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHHF010000001.1 Salmonella enterica strain PNUSAS394558 SAMN37929729-rid19943563.denovo.01, whole genome shotgun sequence	145266..145703	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHHF010000053.1 Salmonella enterica strain PNUSAS394558 SAMN37929729-rid19943563.guided.22, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABOHHF010000039.1 Salmonella enterica strain PNUSAS394558 SAMN37929729-rid19943563.denovo.42, whole genome shotgun sequence	4021..4151																																																						avrA	ABOHHF010000003.1	207907..208775	99.77	870	0						
GCA_032985885.1_PDT001952461.1_genomic.fna	Salmonella_enterica	0.5213	324.585 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHHD010000003.1 Salmonella enterica strain PNUSAS394679 SAMN37929741-rid19943573.denovo.03, whole genome shotgun sequence	68379..68816	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHHD010000048.1 Salmonella enterica strain PNUSAS394679 SAMN37929741-rid19943573.guided.13, whole genome shotgun sequence	38011..38448	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOHHD010000014.1 Salmonella enterica strain PNUSAS394679 SAMN37929741-rid19943573.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOHHD010000014.1 Salmonella enterica strain PNUSAS394679 SAMN37929741-rid19943573.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABOHHD010000001.1	401322..402190	100	869	0						
GCA_032985905.1_PDT001952458.1_genomic.fna	Salmonella_enterica	0.5214	241.414 KB	8	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	2	aac(6')-Iaa,aac(6')-Iaa,tet(C),tet(C)	1	parC_p.T57S	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOHHG010000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325924 SAMN37929719-rid19943543.denovo.08, whole genome shotgun sequence	224889..225326	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABOHHG010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325924 SAMN37929719-rid19943543.guided.28, whole genome shotgun sequence	15876..16313	Amikacin, Tobramycin	NC_003197	tet(C)	99.83	1191/1191	ABOHHG010000036.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325924 SAMN37929719-rid19943543.denovo.39, whole genome shotgun sequence	882..2072	Doxycycline, Tetracycline	AF055345	tet(C)	99.83	1191/1191	ABOHHG010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325924 SAMN37929719-rid19943543.guided.40, whole genome shotgun sequence	923..2113	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHHG010000015.1	82190..83059	99.31	870	0						
GCA_032985925.1_PDT001952459.1_genomic.fna	Salmonella_enterica	0.5216	277.698 KB	7	aroC_341,dnaN_11,hemD_8,hisD_404,purE_61,sucA_161,thrA_341	1291	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_341	dnaN	100	100	dnaN_11	hemD	100	100	hemD_8	hisD	100	100	hisD_404	purE	100	100	purE_61	sucA	100	100	sucA_161	thrA	100	100	thrA_341	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOHHE010000001.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325922 SAMN37929722-rid19943553.denovo.01, whole genome shotgun sequence	406386..406823	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOHHE010000049.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12325922 SAMN37929722-rid19943553.guided.28, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHHE010000007.1	94379..95248	98.966	870	0						
GCA_032985945.1_PDT001952457.1_genomic.fna	Salmonella_enterica	0.5221	342.65 KB	6	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHHJ010000005.1 Salmonella enterica strain PNUSAS394554 SAMN37929732-rid19943533.denovo.05, whole genome shotgun sequence	153902..154339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHHJ010000031.1 Salmonella enterica strain PNUSAS394554 SAMN37929732-rid19943533.guided.15, whole genome shotgun sequence	42396..42833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032985965.1_PDT001952456.1_genomic.fna	Salmonella_enterica	0.5212	223.105 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHHH010000003.1 Salmonella enterica strain PNUSAS394553 SAMN37929717-rid19943523.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHHH010000052.1 Salmonella enterica strain PNUSAS394553 SAMN37929717-rid19943523.guided.19, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOHHH010000015.1 Salmonella enterica strain PNUSAS394553 SAMN37929717-rid19943523.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOHHH010000015.1 Salmonella enterica strain PNUSAS394553 SAMN37929717-rid19943523.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABOHHH010000002.1	401154..402022	100	869	0						
GCA_032985985.1_PDT001952455.1_genomic.fna	Salmonella_enterica	0.5208	331.046 KB	5	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncY	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHHI010000010.1 Salmonella enterica strain PNUSAS394549 SAMN37929714-rid19943513.denovo.10, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHHI010000036.1 Salmonella enterica strain PNUSAS394549 SAMN37929714-rid19943513.guided.17, whole genome shotgun sequence	44287..44724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncY	99.35	765 / 765	ABOHHI010000014.1 Salmonella enterica strain PNUSAS394549 SAMN37929714-rid19943513.denovo.14, whole genome shotgun sequence	25939..26703																																																																	
GCA_032986005.1_PDT001952451.1_genomic.fna	Salmonella_enterica	0.5208	470.703 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHHL010000001.1 Salmonella enterica strain PNUSAS394555 SAMN37929731-rid19943473.denovo.01, whole genome shotgun sequence	409295..409732	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHHL010000024.1 Salmonella enterica strain PNUSAS394555 SAMN37929731-rid19943473.guided.16, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032986025.1_PDT001952452.1_genomic.fna	Salmonella_enterica	0.5201	467.416 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHHK010000001.1 Salmonella enterica strain PNUSAS394660 SAMN37929914-rid19943483.denovo.01, whole genome shotgun sequence	674292..674729	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHHK010000025.1 Salmonella enterica strain PNUSAS394660 SAMN37929914-rid19943483.guided.13, whole genome shotgun sequence	26842..27279	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOHHK010000013.1 Salmonella enterica strain PNUSAS394660 SAMN37929914-rid19943483.denovo.15, whole genome shotgun sequence	2465..2998																																																						avrA	ABOHHK010000009.1	150695..151565	99.196	871	0						
GCA_032986045.1_PDT001952449.1_genomic.fna	Salmonella_enterica	0.5202	490.112 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHHM010000001.1 Salmonella enterica strain PNUSAS394664 SAMN37929928-rid19943453.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHHM010000022.1 Salmonella enterica strain PNUSAS394664 SAMN37929928-rid19943453.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHHM010000012.1 Salmonella enterica strain PNUSAS394664 SAMN37929928-rid19943453.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOHHM010000016.1 Salmonella enterica strain PNUSAS394664 SAMN37929928-rid19943453.denovo.19, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	98.93	374 / 374	ABOHHM010000013.1 Salmonella enterica strain PNUSAS394664 SAMN37929928-rid19943453.denovo.15, whole genome shotgun sequence	32004..32377																																									avrA	ABOHHM010000002.1	553696..554565	99.54	870	0						
GCA_032986105.1_PDT001952446.1_genomic.fna	Salmonella_enterica	0.5208	392.171 KB	3	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHHP010000001.1 Salmonella enterica strain PNUSAS394675 SAMN37929934-rid19943423.denovo.01, whole genome shotgun sequence	392469..392906	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHHP010000028.1 Salmonella enterica strain PNUSAS394675 SAMN37929934-rid19943423.guided.11, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_032986125.1_PDT001952445.1_genomic.fna	Salmonella_enterica	0.5217	761.811 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHHQ010000001.1 Salmonella enterica strain PNUSAS394674 SAMN37929937-rid19943413.denovo.01, whole genome shotgun sequence	481935..482372	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOHHQ010000016.1 Salmonella enterica strain PNUSAS394674 SAMN37929937-rid19943413.guided.08, whole genome shotgun sequence	27983..28420	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHHQ010000004.1	553621..554490	99.77	870	0						
GCA_032986145.1_PDT001952444.1_genomic.fna	Salmonella_enterica	0.5225	201.571 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHHR010000001.1 Salmonella enterica strain PNUSAS394739 SAMN37929939-rid19943403.denovo.01, whole genome shotgun sequence	460175..460612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOHHR010000041.1 Salmonella enterica strain PNUSAS394739 SAMN37929939-rid19943403.guided.32, whole genome shotgun sequence	5703..6140	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHHR010000042.1 Salmonella enterica strain PNUSAS394739 SAMN37929939-rid19943403.guided.33, whole genome shotgun sequence	5703..6140	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHHR010000002.1	93814..94683	99.655	870	0						
GCA_032986165.1_PDT001952443.1_genomic.fna	Salmonella_enterica	0.522	425.575 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOHHS010000004.1 Salmonella enterica strain PNUSAS394671 SAMN37929931-rid19943393.denovo.04, whole genome shotgun sequence	354324..354761	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOHHS010000025.1 Salmonella enterica strain PNUSAS394671 SAMN37929931-rid19943393.guided.18, whole genome shotgun sequence	3103..3540	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHHS010000002.1	131938..132807	98.966	870	0						
GCA_032986205.1_PDT001952441.1_genomic.fna	Salmonella_enterica	0.5214	257.246 KB	4	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHHT010000001.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325931 SAMN37929946-rid19943373.denovo.01, whole genome shotgun sequence	348525..348962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHHT010000031.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325931 SAMN37929946-rid19943373.guided.25, whole genome shotgun sequence	4493..4930	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032986225.1_PDT001952440.1_genomic.fna	Salmonella_enterica	0.5207	284.703 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHHW010000001.1 Salmonella enterica strain PNUSAS394680 SAMN37929740-rid19943363.denovo.01, whole genome shotgun sequence	344342..344779	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHHW010000050.1 Salmonella enterica strain PNUSAS394680 SAMN37929740-rid19943363.guided.23, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHHW010000011.1	150795..151665	99.196	871	0						
GCA_032986245.1_PDT001952439.1_genomic.fna	Salmonella_enterica	0.5207	323.309 KB	3	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHHV010000001.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325936 SAMN37930581-rid19943353.denovo.01, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHHV010000031.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325936 SAMN37930581-rid19943353.guided.22, whole genome shotgun sequence	694..1131	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032986285.1_PDT001952437.1_genomic.fna	Salmonella_enterica	0.5227	332.888 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHHY010000001.1 Salmonella enterica strain PNUSAS394661 SAMN37929917-rid19943333.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHHY010000033.1 Salmonella enterica strain PNUSAS394661 SAMN37929917-rid19943333.guided.23, whole genome shotgun sequence	3616..4053	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHHY010000005.1	149828..150697	99.655	870	0						
GCA_032986385.1_PDT001952427.1_genomic.fna	Salmonella_enterica	0.5214	714.238 KB	3	aroC_11,dnaN_10,hemD_25,hisD_42,purE_337,sucA_13,thrA_4	1954	4:e,h:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_42	purE	100	100	purE_337	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHID010000001.1 Salmonella enterica strain PNUSAS394665 SAMN37929925-rid19943233.denovo.01, whole genome shotgun sequence	642839..643276	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHID010000021.1 Salmonella enterica strain PNUSAS394665 SAMN37929925-rid19943233.guided.11, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	99.48	193 / 193	ABOHID010000016.1 Salmonella enterica strain PNUSAS394665 SAMN37929925-rid19943233.denovo.19, whole genome shotgun sequence	192..384																																																						avrA	ABOHID010000004.1	539007..539876	99.54	870	0						
GCA_032986405.1_PDT001952424.1_genomic.fna	Salmonella_enterica	0.5211	489.863 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHIE010000001.1 Salmonella enterica strain PNUSAS394663 SAMN37929916-rid19943203.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHIE010000020.1 Salmonella enterica strain PNUSAS394663 SAMN37929916-rid19943203.guided.15, whole genome shotgun sequence	6203..6640	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col156	94.81	154 / 154	ABOHIE010000015.1 Salmonella enterica strain PNUSAS394663 SAMN37929916-rid19943203.denovo.18, whole genome shotgun sequence	4077..4230	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHIE010000011.1 Salmonella enterica strain PNUSAS394663 SAMN37929916-rid19943203.denovo.12, whole genome shotgun sequence	40540..41182		enterobacteriales	IncFII(S)	100	262 / 262	ABOHIE010000013.1 Salmonella enterica strain PNUSAS394663 SAMN37929916-rid19943203.denovo.16, whole genome shotgun sequence	3377..3638																																									avrA	ABOHIE010000002.1	553636..554505	99.54	870	0						
GCA_032986425.1_PDT001952419.1_genomic.fna	Salmonella_enterica	0.5213	245.651 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	3	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHIG010000001.1 Salmonella enterica strain PNUSAS394670 SAMN37929930-rid19943153.denovo.01, whole genome shotgun sequence	92254..92691	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHIG010000052.1 Salmonella enterica strain PNUSAS394670 SAMN37929930-rid19943153.guided.37, whole genome shotgun sequence	11535..11972	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABOHIG010000027.1 Salmonella enterica strain PNUSAS394670 SAMN37929930-rid19943153.denovo.28, whole genome shotgun sequence	11372..12571	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOHIG010000053.1 Salmonella enterica strain PNUSAS394670 SAMN37929930-rid19943153.guided.45, whole genome shotgun sequence	939..2138	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOHIG010000036.1 Salmonella enterica strain PNUSAS394670 SAMN37929930-rid19943153.denovo.39, whole genome shotgun sequence	1702..2175	Trimethoprim	AF393510	dfrA14	100	474/474	ABOHIG010000054.1 Salmonella enterica strain PNUSAS394670 SAMN37929930-rid19943153.guided.46, whole genome shotgun sequence	774..1247	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOHIG010000030.1 Salmonella enterica strain PNUSAS394670 SAMN37929930-rid19943153.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABOHIG010000005.1	149828..150697	99.655	870	0						
GCA_032986445.1_PDT001952418.1_genomic.fna	Salmonella_enterica	0.5212	324.016 KB	4	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOHIF010000001.1 Salmonella enterica subsp. enterica serovar Rissen strain FSIS12325897 SAMN37929924-rid19943143.denovo.01, whole genome shotgun sequence	157550..157987	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOHIF010000035.1 Salmonella enterica subsp. enterica serovar Rissen strain FSIS12325897 SAMN37929924-rid19943143.guided.22, whole genome shotgun sequence	15858..16295	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOHIF010000025.1 Salmonella enterica subsp. enterica serovar Rissen strain FSIS12325897 SAMN37929924-rid19943143.denovo.28, whole genome shotgun sequence	557..687																																																						avrA	ABOHIF010000002.1	131947..132816	99.195	870	0						
GCA_032986465.1_PDT001952417.1_genomic.fna	Salmonella_enterica	0.5202	278.15 KB	5	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHIH010000001.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325896 SAMN37929922-rid19943133.denovo.01, whole genome shotgun sequence	609817..610254	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOHIH010000028.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325896 SAMN37929922-rid19943133.denovo.29, whole genome shotgun sequence	6190..6992	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOHIH010000028.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325896 SAMN37929922-rid19943133.denovo.29, whole genome shotgun sequence	6190..6993	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOHIH010000028.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325896 SAMN37929922-rid19943133.denovo.29, whole genome shotgun sequence	6190..6993	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOHIH010000028.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325896 SAMN37929922-rid19943133.denovo.29, whole genome shotgun sequence	6190..6993	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOHIH010000028.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325896 SAMN37929922-rid19943133.denovo.29, whole genome shotgun sequence	5450..6190	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOHIH010000028.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325896 SAMN37929922-rid19943133.denovo.29, whole genome shotgun sequence	5450..6190	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABOHIH010000060.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325896 SAMN37929922-rid19943133.guided.34, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOHIH010000062.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325896 SAMN37929922-rid19943133.guided.36, whole genome shotgun sequence	2617..3419	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOHIH010000062.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325896 SAMN37929922-rid19943133.guided.36, whole genome shotgun sequence	2616..3419	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOHIH010000062.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325896 SAMN37929922-rid19943133.guided.36, whole genome shotgun sequence	2616..3419	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOHIH010000062.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325896 SAMN37929922-rid19943133.guided.36, whole genome shotgun sequence	2616..3419	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOHIH010000062.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325896 SAMN37929922-rid19943133.guided.36, whole genome shotgun sequence	3419..4159	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOHIH010000062.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325896 SAMN37929922-rid19943133.guided.36, whole genome shotgun sequence	3419..4159	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOHIH010000029.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325896 SAMN37929922-rid19943133.denovo.30, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABOHIH010000020.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325896 SAMN37929922-rid19943133.denovo.21, whole genome shotgun sequence	5072..5568																																																avrA	ABOHIH010000002.1	121617..122486	98.966	870	0						
GCA_032986485.1_PDT001952416.1_genomic.fna	Salmonella_enterica	0.5215	397.894 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHII010000001.1 Salmonella enterica strain PNUSAS394659 SAMN37929921-rid19943123.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHII010000029.1 Salmonella enterica strain PNUSAS394659 SAMN37929921-rid19943123.guided.12, whole genome shotgun sequence	16810..17247	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOHII010000014.1 Salmonella enterica strain PNUSAS394659 SAMN37929921-rid19943123.denovo.16, whole genome shotgun sequence	66753..66894																																																						avrA	ABOHII010000002.1	149923..150792	99.77	870	0						
GCA_032986505.1_PDT001952414.1_genomic.fna	Salmonella_enterica	0.5208	743.226 KB	3	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOHIJ010000001.1 Salmonella enterica strain PNUSAS394672 SAMN37929933-rid19943103.denovo.01, whole genome shotgun sequence	730294..730731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOHIJ010000021.1 Salmonella enterica strain PNUSAS394672 SAMN37929933-rid19943103.guided.12, whole genome shotgun sequence	16462..16899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHIJ010000002.1	572202..573071	99.31	870	0						
GCA_032986545.1_PDT001952412.1_genomic.fna	Salmonella_enterica	0.5201	397.242 KB	5	aroC_13,dnaN_11,hemD_25,hisD_72,purE_10,sucA_23,thrA_23	419	4:a:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	4	a	1,7	Salmonella enterica subspecies enterica (subspecies I)	Arechavaleta		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHIK010000004.1 Salmonella enterica strain PNUSAS394677 SAMN37929936-rid19943083.denovo.04, whole genome shotgun sequence	152231..152668	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHIK010000035.1 Salmonella enterica strain PNUSAS394677 SAMN37929936-rid19943083.guided.25, whole genome shotgun sequence	8387..8824	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHIK010000002.1	94261..95130	99.54	870	0						
GCA_032986865.1_PDT001952433.1_genomic.fna	Salmonella_enterica	0.5227	42.512 KB	33	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHIM010000017.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325884 SAMN37930589-rid19943293.denovo.017, whole genome shotgun sequence	12518..12955	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHIM010000202.1 Salmonella enterica subsp. enterica serovar Newport strain FSIS12325884 SAMN37930589-rid19943293.guided.069, whole genome shotgun sequence	15464..15901	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHIM010000032.1	43396..44264	99.195	870	0						
GCA_032986885.1_PDT001952423.1_genomic.fna	Salmonella_enterica	0.5211	51.689 KB	31	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHIO010000020.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325894 SAMN37930648-rid19943193.denovo.020, whole genome shotgun sequence	12438..12875	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHIO010000125.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325894 SAMN37930648-rid19943193.denovo.128, whole genome shotgun sequence	1945..2781	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOHIO010000125.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325894 SAMN37930648-rid19943193.denovo.128, whole genome shotgun sequence	2781..3584	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOHIO010000237.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325894 SAMN37930648-rid19943193.guided.097, whole genome shotgun sequence	7344..7781	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHIO010000239.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325894 SAMN37930648-rid19943193.guided.179, whole genome shotgun sequence	1171..2007	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOHIO010000239.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325894 SAMN37930648-rid19943193.guided.179, whole genome shotgun sequence	368..1171	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOHIO010000150.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325894 SAMN37930648-rid19943193.denovo.154, whole genome shotgun sequence	2296..3501	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOHIO010000238.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325894 SAMN37930648-rid19943193.guided.153, whole genome shotgun sequence	2327..3532	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOHIO010000140.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325894 SAMN37930648-rid19943193.denovo.143, whole genome shotgun sequence	1155..1836	enterobacteriales	IncFII	96.95	262 / 261	ABOHIO010000125.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325894 SAMN37930648-rid19943193.denovo.128, whole genome shotgun sequence	1061..1322		enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABOHIO010000127.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325894 SAMN37930648-rid19943193.denovo.130, whole genome shotgun sequence	892..1151		enterobacteriales	IncX1	100	373 / 373	ABOHIO010000120.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325894 SAMN37930648-rid19943193.denovo.123, whole genome shotgun sequence	1118..1490																																		avrA	ABOHIO010000041.1	39484..40353	99.655	870	0						
GCA_032986905.1_PDT001952420.1_genomic.fna	Salmonella_enterica	0.5237	46.294 KB	33	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHIP010000059.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325888 SAMN37930606-rid19943163.denovo.059, whole genome shotgun sequence	11796..12233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHIP010000207.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325888 SAMN37930606-rid19943163.guided.079, whole genome shotgun sequence	14106..14543	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOHIP010000155.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325888 SAMN37930606-rid19943163.denovo.158, whole genome shotgun sequence	557..687	enterobacteriales	ColRNAI	90.08	131 / 130	ABOHIP010000150.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325888 SAMN37930606-rid19943163.denovo.153, whole genome shotgun sequence	3981..4111																																																avrA	ABOHIP010000080.1	19099..19968	99.54	870	0						
GCA_032986925.1_PDT001952413.1_genomic.fna	Salmonella_enterica	0.5209	279.77 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHIQ010000001.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOHIQ010000030.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.32, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOHIQ010000030.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.32, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOHIQ010000039.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.44, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHIQ010000039.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.44, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOHIQ010000055.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.guided.27, whole genome shotgun sequence	19182..19619	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOHIQ010000058.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.guided.38, whole genome shotgun sequence	6042..6833	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOHIQ010000059.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.guided.47, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOHIQ010000062.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.guided.56, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHIQ010000062.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.guided.56, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOHIQ010000046.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.54, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOHIQ010000063.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.guided.57, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOHIQ010000030.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.32, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOHIQ010000040.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.45, whole genome shotgun sequence	1346..2559	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOHIQ010000058.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.guided.38, whole genome shotgun sequence	7095..8354	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOHIQ010000059.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.guided.47, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOHIQ010000061.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.guided.52, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOHIQ010000039.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.44, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOHIQ010000064.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.guided.59, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOHIQ010000065.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.guided.60, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABOHIQ010000066.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.guided.61, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOHIQ010000067.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.guided.62, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOHIQ010000029.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.31, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOHIQ010000030.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.32, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOHIQ010000057.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.guided.35, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOHIQ010000060.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.guided.49, whole genome shotgun sequence	873..2792	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABOHIQ010000030.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.32, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABOHIQ010000058.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.guided.38, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																								enterobacteriales	Col156	94.81	154 / 154	ABOHIQ010000035.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.40, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABOHIQ010000044.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.51, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABOHIQ010000047.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.55, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOHIQ010000027.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.29, whole genome shotgun sequence	19810..20491		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOHIQ010000021.1 Salmonella enterica strain PNUSAS394662 SAMN37929919-rid19943093.denovo.21, whole genome shotgun sequence	55562..56058																											avrA	ABOHIQ010000002.1	508765..509634	99.885	870	0						
GCA_032987085.1_PDT001952411.1_genomic.fna	Salmonella_enterica	0.5207	222.566 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHIR010000003.1 Salmonella enterica strain PNUSAS394668 SAMN37929927-rid19943073.denovo.03, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOHIR010000024.1 Salmonella enterica strain PNUSAS394668 SAMN37929927-rid19943073.denovo.25, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABOHIR010000048.1 Salmonella enterica strain PNUSAS394668 SAMN37929927-rid19943073.guided.21, whole genome shotgun sequence	11765..12202	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOHIR010000054.1 Salmonella enterica strain PNUSAS394668 SAMN37929927-rid19943073.guided.48, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOHIR010000035.1 Salmonella enterica strain PNUSAS394668 SAMN37929927-rid19943073.denovo.38, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOHIR010000053.1 Salmonella enterica strain PNUSAS394668 SAMN37929927-rid19943073.guided.46, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABOHIR010000035.1 Salmonella enterica strain PNUSAS394668 SAMN37929927-rid19943073.denovo.38, whole genome shotgun sequence	6603..7817	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABOHIR010000051.1 Salmonella enterica strain PNUSAS394668 SAMN37929927-rid19943073.guided.39, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOHIR010000052.1 Salmonella enterica strain PNUSAS394668 SAMN37929927-rid19943073.guided.41, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABOHIR010000035.1 Salmonella enterica strain PNUSAS394668 SAMN37929927-rid19943073.denovo.38, whole genome shotgun sequence	4491..5666	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABOHIR010000051.1 Salmonella enterica strain PNUSAS394668 SAMN37929927-rid19943073.guided.39, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	IncFIB(S)	100	643 / 643	ABOHIR010000019.1 Salmonella enterica strain PNUSAS394668 SAMN37929927-rid19943073.denovo.19, whole genome shotgun sequence	36050..36692	enterobacteriales	IncFII(S)	100	262 / 262	ABOHIR010000019.1 Salmonella enterica strain PNUSAS394668 SAMN37929927-rid19943073.denovo.19, whole genome shotgun sequence	51777..52038																																																avrA	ABOHIR010000001.1	506641..507510	99.885	870	0						
GCA_032991085.1_PDT001952410.1_genomic.fna	Salmonella_enterica	0.5214	257.245 KB	5	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHIS010000003.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325933 SAMN37929945-rid19943063.denovo.03, whole genome shotgun sequence	348511..348948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHIS010000037.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325933 SAMN37929945-rid19943063.guided.27, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032994385.1_PDT001952405.1_genomic.fna	Salmonella_enterica	0.523	50.911 KB	30	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	-:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	-	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOGZW010000013.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12325889 SAMN37930608-rid19943013.denovo.013, whole genome shotgun sequence	17176..17613	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOGZW010000188.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12325889 SAMN37930608-rid19943013.guided.029, whole genome shotgun sequence	44275..44712	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOGZW010000081.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12325889 SAMN37930608-rid19943013.denovo.082, whole genome shotgun sequence	17996..18418	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOGZW010000191.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12325889 SAMN37930608-rid19943013.guided.104, whole genome shotgun sequence	12268..12690	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOGZW010000017.1	62202..63071	99.195	870	0						
GCA_032994445.1_PDT001952402.1_genomic.fna	Salmonella_enterica	0.5212	162.432 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOGZZ010000001.1 Salmonella enterica strain PNUSAS394764 SAMN37931368-rid19942643.denovo.01, whole genome shotgun sequence	310586..311023	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOGZZ010000067.1 Salmonella enterica strain PNUSAS394764 SAMN37931368-rid19942643.guided.34, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABOGZZ010000012.1 Salmonella enterica strain PNUSAS394764 SAMN37931368-rid19942643.denovo.12, whole genome shotgun sequence	121742..122384																																																																	
GCA_032994485.1_PDT001952393.1_genomic.fna	Salmonella_enterica	0.5231	35.573 KB	39	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(p96A)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOHAC010000057.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325890 SAMN37930611-rid19942913.denovo.057, whole genome shotgun sequence	12476..12913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOHAC010000231.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325890 SAMN37930611-rid19942913.guided.085, whole genome shotgun sequence	14162..14599	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOHAC010000161.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325890 SAMN37930611-rid19942913.denovo.164, whole genome shotgun sequence	239..369	enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOHAC010000118.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS12325890 SAMN37930611-rid19942913.denovo.120, whole genome shotgun sequence	4628..5161																																																avrA	ABOHAC010000026.1	39602..40471	99.425	870	0						
GCA_032994505.1_PDT001952384.1_genomic.fna	Salmonella_enterica	0.5197	368.134 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHAE010000001.1 Salmonella enterica strain PNUSAS394761 SAMN37931389-rid19942833.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHAE010000034.1 Salmonella enterica strain PNUSAS394761 SAMN37931389-rid19942833.guided.13, whole genome shotgun sequence	43583..44020	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOHAE010000005.1 Salmonella enterica strain PNUSAS394761 SAMN37931389-rid19942833.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOHAE010000036.1 Salmonella enterica strain PNUSAS394761 SAMN37931389-rid19942833.guided.26, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHAE010000002.1	173924..174793	99.195	870	0						
GCA_032994545.1_PDT001952382.1_genomic.fna	Salmonella_enterica	0.5217	420.061 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHAH010000001.1 Salmonella enterica strain PNUSAS394745 SAMN37931309-rid19942813.denovo.01, whole genome shotgun sequence	177159..177596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHAH010000029.1 Salmonella enterica strain PNUSAS394745 SAMN37931309-rid19942813.guided.21, whole genome shotgun sequence	9298..9735	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHAH010000002.1	563553..564422	99.77	870	0						
GCA_032994565.1_PDT001952383.1_genomic.fna	Salmonella_enterica	0.5197	429.909 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHAF010000001.1 Salmonella enterica strain PNUSAS394742 SAMN37931312-rid19942823.denovo.01, whole genome shotgun sequence	561970..562407	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHAF010000031.1 Salmonella enterica strain PNUSAS394742 SAMN37931312-rid19942823.guided.16, whole genome shotgun sequence	41680..42117	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHAF010000011.1	140044..140912	99.195	870	0						
GCA_032994585.1_PDT001952381.1_genomic.fna	Salmonella_enterica	0.5195	600.32 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHAI010000001.1 Salmonella enterica strain PNUSAS394772 SAMN37931360-rid19942803.denovo.01, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHAI010000027.1 Salmonella enterica strain PNUSAS394772 SAMN37931360-rid19942803.guided.11, whole genome shotgun sequence	40818..41255	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOHAI010000013.1 Salmonella enterica strain PNUSAS394772 SAMN37931360-rid19942803.denovo.15, whole genome shotgun sequence	34958..35491																																																						avrA	ABOHAI010000003.1	497130..497998	99.425	870	0						
GCA_032994605.1_PDT001952379.1_genomic.fna	Salmonella_enterica	0.5222	444.116 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHAJ010000001.1 Salmonella enterica strain PNUSAS394778 SAMN37931374-rid19942783.denovo.01, whole genome shotgun sequence	615976..616413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHAJ010000031.1 Salmonella enterica strain PNUSAS394778 SAMN37931374-rid19942783.guided.15, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHAJ010000002.1	149828..150697	99.655	870	0						
GCA_032994625.1_PDT001952380.1_genomic.fna	Salmonella_enterica	0.5232	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(Yp)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHAG010000001.1 Salmonella enterica strain PNUSAS394775 SAMN37931377-rid19942793.denovo.01, whole genome shotgun sequence	404469..404906	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHAG010000032.1 Salmonella enterica strain PNUSAS394775 SAMN37931377-rid19942793.guided.24, whole genome shotgun sequence	5664..6101	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	91.96	224 / 230	ABOHAG010000017.1 Salmonella enterica strain PNUSAS394775 SAMN37931377-rid19942793.denovo.17, whole genome shotgun sequence	32148..32368																																																						avrA	ABOHAG010000002.1	150017..150886	99.655	870	0						
GCA_032994645.1_PDT001952377.1_genomic.fna	Salmonella_enterica	0.5223	444.116 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHAL010000001.1 Salmonella enterica strain PNUSAS394768 SAMN37931364-rid19942613.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHAL010000033.1 Salmonella enterica strain PNUSAS394768 SAMN37931364-rid19942613.guided.15, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHAL010000002.1	149828..150696	99.54	870	0						
GCA_032994665.1_PDT001952378.1_genomic.fna	Salmonella_enterica	0.5222	730.28 KB	3	aroC_18,dnaN_2,hemD_18,hisD_12,purE_25,sucA_7,thrA_8	2501	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_2	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_25	sucA	100	100	sucA_7	thrA	100	100	thrA_8	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOHAK010000001.1 Salmonella enterica strain PNUSAS394773 SAMN37931359-rid19942773.denovo.01, whole genome shotgun sequence	995380..995817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOHAK010000017.1 Salmonella enterica strain PNUSAS394773 SAMN37931359-rid19942773.guided.09, whole genome shotgun sequence	42403..42840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHAK010000002.1	659513..660382	99.54	870	0						
GCA_032994685.1_PDT001952376.1_genomic.fna	Salmonella_enterica	0.522	386.21 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHAN010000001.1 Salmonella enterica strain PNUSAS394782 SAMN37931370-rid19942763.denovo.01, whole genome shotgun sequence	790293..790730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHAN010000043.1 Salmonella enterica strain PNUSAS394782 SAMN37931370-rid19942763.guided.33, whole genome shotgun sequence	642..1079	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHAN010000005.1	164889..165758	98.966	870	0						
GCA_032994755.1_PDT001951297.1_genomic.fna	Salmonella_enterica	0.5226	631.992 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHIT010000001.1 Salmonella enterica strain PNUSAS394213 SAMN37926072-rid19932263.denovo.01, whole genome shotgun sequence	684215..684652	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHIT010000025.1 Salmonella enterica strain PNUSAS394213 SAMN37926072-rid19932263.guided.19, whole genome shotgun sequence	7839..8276	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHIT010000002.1	563621..564490	99.77	870	0						
GCA_032996825.1_PDT001770078.1_genomic.fna	Salmonella_enterica	0.5222	223.5 KB	9	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHJK010000003.1 Salmonella enterica strain PNUSAS353889 SAMN35640505-rid18336553.denovo.03, whole genome shotgun sequence	79798..80235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHJK010000052.1 Salmonella enterica strain PNUSAS353889 SAMN35640505-rid18336553.guided.43, whole genome shotgun sequence	423..860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.83	109 / 130	ABOHJK010000041.1 Salmonella enterica strain PNUSAS353889 SAMN35640505-rid18336553.denovo.42, whole genome shotgun sequence	2396..2504																																																						avrA	ABOHJK010000005.1	83557..84426	99.54	870	0						
GCA_032996845.1_PDT001770077.1_genomic.fna	Salmonella_enterica	0.5208	285.877 KB	7	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHJM010000012.1 Salmonella enterica strain PNUSAS353879 SAMN35640500-rid18328173.denovo.12, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHJM010000060.1 Salmonella enterica strain PNUSAS353879 SAMN35640500-rid18328173.guided.22, whole genome shotgun sequence	12480..12917	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOHJM010000019.1 Salmonella enterica strain PNUSAS353879 SAMN35640500-rid18328173.denovo.19, whole genome shotgun sequence	34957..35490																																																						avrA	ABOHJM010000005.1	187683..188549	98.966	870	0						
GCA_032996855.1_PDT001770080.1_genomic.fna	Salmonella_enterica	0.5206	413.269 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHJL010000001.1 Salmonella enterica strain PNUSAS353881 SAMN35640502-rid18335013.denovo.01, whole genome shotgun sequence	509882..510319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHJL010000040.1 Salmonella enterica strain PNUSAS353881 SAMN35640502-rid18335013.guided.18, whole genome shotgun sequence	3559..3996	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032996885.1_PDT001770074.1_genomic.fna	Salmonella_enterica	0.5211	489.739 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHJN010000001.1 Salmonella enterica strain PNUSAS353887 SAMN35640466-rid18331683.denovo.01, whole genome shotgun sequence	807943..808380	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHJN010000024.1 Salmonella enterica strain PNUSAS353887 SAMN35640466-rid18331683.guided.16, whole genome shotgun sequence	8229..8666	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABOHJN010000011.1 Salmonella enterica strain PNUSAS353887 SAMN35640466-rid18331683.denovo.11, whole genome shotgun sequence	35443..36085	enterobacteriales	IncX1	98.66	374 / 374	ABOHJN010000014.1 Salmonella enterica strain PNUSAS353887 SAMN35640466-rid18331683.denovo.17, whole genome shotgun sequence	5341..5714																																																avrA	ABOHJN010000002.1	553169..554038	99.54	870	0						
GCA_032996985.1_PDT001770033.1_genomic.fna	Salmonella_enterica	0.5218	476.193 KB	4	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOHJP010000001.1 Salmonella enterica strain PNUSAS353336 SAMN35639197-rid18296073.denovo.01, whole genome shotgun sequence	346963..347400	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOHJP010000029.1 Salmonella enterica strain PNUSAS353336 SAMN35639197-rid18296073.guided.23, whole genome shotgun sequence	2777..3214	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHJP010000007.1	150674..151543	99.54	870	0						
GCA_032999545.1_PDT001765486.1_genomic.fna	Salmonella_enterica	0.5221	106.568 KB	13	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHLE010000032.1 Salmonella enterica strain PNUSAS352654 SAMN35532159-rid18250943.denovo.33, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHLE010000072.1 Salmonella enterica strain PNUSAS352654 SAMN35532159-rid18250943.guided.59, whole genome shotgun sequence	2274..2711	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABOHLE010000038.1 Salmonella enterica strain PNUSAS352654 SAMN35532159-rid18250943.denovo.39, whole genome shotgun sequence	26921..27180																																																																	
GCA_032999585.1_PDT001765485.1_genomic.fna	Salmonella_enterica	0.5199	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOHLF010000010.1 Salmonella enterica strain PNUSAS352657 SAMN35532156-rid18250933.denovo.10, whole genome shotgun sequence	29754..30188	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOHLF010000053.1 Salmonella enterica strain PNUSAS352657 SAMN35532156-rid18250933.guided.40, whole genome shotgun sequence	871..1305	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																																						
GCA_032999605.1_PDT001765484.1_genomic.fna	Salmonella_enterica	0.5196	382.204 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pCoo),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHLG010000001.1 Salmonella enterica strain PNUSAS352653 SAMN35532153-rid18250923.denovo.01, whole genome shotgun sequence	498040..498477	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.47	393/438	ABOHLG010000030.1 Salmonella enterica strain PNUSAS352653 SAMN35532153-rid18250923.guided.26, whole genome shotgun sequence	1..393	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCoo)	95.08	264 / 262	ABOHLG010000016.1 Salmonella enterica strain PNUSAS352653 SAMN35532153-rid18250923.denovo.16, whole genome shotgun sequence	27558..27819	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOHLG010000014.1 Salmonella enterica strain PNUSAS352653 SAMN35532153-rid18250923.denovo.14, whole genome shotgun sequence	81112..81253																																																											
GCA_032999625.1_PDT001765483.1_genomic.fna	Salmonella_enterica	0.5214	489.747 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHLH010000001.1 Salmonella enterica strain PNUSAS352650 SAMN35532162-rid18250913.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHLH010000022.1 Salmonella enterica strain PNUSAS352650 SAMN35532162-rid18250913.guided.16, whole genome shotgun sequence	3277..3714	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHLH010000013.1 Salmonella enterica strain PNUSAS352650 SAMN35532162-rid18250913.denovo.13, whole genome shotgun sequence	40509..41151	enterobacteriales	IncFII(S)	100	262 / 262	ABOHLH010000016.1 Salmonella enterica strain PNUSAS352650 SAMN35532162-rid18250913.denovo.18, whole genome shotgun sequence	3395..3656																																																avrA	ABOHLH010000002.1	553384..554253	99.54	870	0						
GCA_032999645.1_PDT001765481.1_genomic.fna	Salmonella_enterica	0.521	478.499 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHLJ010000001.1 Salmonella enterica strain PNUSAS352655 SAMN35532161-rid18250893.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHLJ010000027.1 Salmonella enterica strain PNUSAS352655 SAMN35532161-rid18250893.guided.17, whole genome shotgun sequence	15933..16370	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHLJ010000013.1 Salmonella enterica strain PNUSAS352655 SAMN35532161-rid18250893.denovo.13, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABOHLJ010000013.1 Salmonella enterica strain PNUSAS352655 SAMN35532161-rid18250893.denovo.13, whole genome shotgun sequence	53092..53353																																																avrA	ABOHLJ010000002.1	585293..586162	99.54	870	0						
GCA_032999665.1_PDT001765482.1_genomic.fna	Salmonella_enterica	0.5208	707.807 KB	3	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHLI010000002.1 Salmonella enterica strain PNUSAS352656 SAMN35532160-rid18250903.denovo.02, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHLI010000024.1 Salmonella enterica strain PNUSAS352656 SAMN35532160-rid18250903.guided.14, whole genome shotgun sequence	5685..6122	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_032999685.1_PDT001765480.1_genomic.fna	Salmonella_enterica	0.5206	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHLK010000001.1 Salmonella enterica strain PNUSAS352658 SAMN35532157-rid18250883.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHLK010000026.1 Salmonella enterica strain PNUSAS352658 SAMN35532157-rid18250883.guided.16, whole genome shotgun sequence	9680..10117	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHLK010000012.1 Salmonella enterica strain PNUSAS352658 SAMN35532157-rid18250883.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOHLK010000017.1 Salmonella enterica strain PNUSAS352658 SAMN35532157-rid18250883.denovo.18, whole genome shotgun sequence	3436..3697		enterobacteriales	IncX1	98.93	374 / 374	ABOHLK010000013.1 Salmonella enterica strain PNUSAS352658 SAMN35532157-rid18250883.denovo.13, whole genome shotgun sequence	32011..32384																																									avrA	ABOHLK010000002.1	553684..554553	99.54	870	0						
GCA_032999705.1_PDT001765479.1_genomic.fna	Salmonella_enterica	0.5214	736.781 KB	2	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHLM010000001.1 Salmonella enterica strain PNUSAS352660 SAMN35532163-rid18250873.denovo.01, whole genome shotgun sequence	647906..648343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHLM010000021.1 Salmonella enterica strain PNUSAS352660 SAMN35532163-rid18250873.guided.17, whole genome shotgun sequence	269..706	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHLM010000003.1	223208..224077	99.425	870	0						
GCA_032999725.1_PDT001765478.1_genomic.fna	Salmonella_enterica	0.5213	329.418 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHLL010000003.1 Salmonella enterica strain PNUSAS352652 SAMN35532154-rid18250863.denovo.03, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHLL010000050.1 Salmonella enterica strain PNUSAS352652 SAMN35532154-rid18250863.guided.29, whole genome shotgun sequence	3498..3935	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOHLL010000016.1 Salmonella enterica strain PNUSAS352652 SAMN35532154-rid18250863.denovo.16, whole genome shotgun sequence	48414..49056	enterobacteriales	IncFII(S)	100	262 / 262	ABOHLL010000016.1 Salmonella enterica strain PNUSAS352652 SAMN35532154-rid18250863.denovo.16, whole genome shotgun sequence	64141..64402		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOHLL010000018.1 Salmonella enterica strain PNUSAS352652 SAMN35532154-rid18250863.denovo.18, whole genome shotgun sequence	70156..70297																																									avrA	ABOHLL010000006.1	155216..156084	100	869	0						
GCA_032999745.1_PDT001765477.1_genomic.fna	Salmonella_enterica	0.5212	258.493 KB	5	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHLN010000001.1 Salmonella enterica strain PNUSAS352659 SAMN35532158-rid18250853.denovo.01, whole genome shotgun sequence	133888..134325	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHLN010000044.1 Salmonella enterica strain PNUSAS352659 SAMN35532158-rid18250853.guided.29, whole genome shotgun sequence	2726..3163	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOHLN010000027.1 Salmonella enterica strain PNUSAS352659 SAMN35532158-rid18250853.denovo.30, whole genome shotgun sequence	1604..1734																																																																	
GCA_032999785.1_PDT001765476.1_genomic.fna	Salmonella_enterica	0.5218	380.394 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHLO010000001.1 Salmonella enterica strain PNUSAS352651 SAMN35532152-rid18250843.denovo.01, whole genome shotgun sequence	835205..835642	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHLO010000027.1 Salmonella enterica strain PNUSAS352651 SAMN35532152-rid18250843.guided.23, whole genome shotgun sequence	604..1041	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHLO010000005.1	94004..94873	99.77	870	0						
GCA_032999805.1_PDT001765475.1_genomic.fna	Salmonella_enterica	0.5207	158.376 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOHLQ010000010.1 Salmonella enterica strain PNUSAS352649 SAMN35532155-rid18250833.denovo.10, whole genome shotgun sequence	29911..30345	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOHLQ010000057.1 Salmonella enterica strain PNUSAS352649 SAMN35532155-rid18250833.guided.41, whole genome shotgun sequence	8862..9296	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	ABOHLQ010000020.1 Salmonella enterica strain PNUSAS352649 SAMN35532155-rid18250833.denovo.20, whole genome shotgun sequence	23493..24367																																																																	
GCA_033000065.1_PDT001765452.1_genomic.fna	Salmonella_enterica	0.5203	176.678 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),Col(pHAD28),IncC,IncI2	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHMD010000001.1 Salmonella enterica strain PNUSAS352634 SAMN35530475-rid18250603.denovo.01, whole genome shotgun sequence	358433..358870	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHMD010000072.1 Salmonella enterica strain PNUSAS352634 SAMN35530475-rid18250603.guided.48, whole genome shotgun sequence	4412..4849	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOHMD010000026.1 Salmonella enterica strain PNUSAS352634 SAMN35530475-rid18250603.denovo.26, whole genome shotgun sequence	14639..15784	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOHMD010000068.1 Salmonella enterica strain PNUSAS352634 SAMN35530475-rid18250603.guided.36, whole genome shotgun sequence	1436..2581	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOHMD010000043.1 Salmonella enterica strain PNUSAS352634 SAMN35530475-rid18250603.denovo.46, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOHMD010000071.1 Salmonella enterica strain PNUSAS352634 SAMN35530475-rid18250603.guided.47, whole genome shotgun sequence	3105..3920	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOHMD010000043.1 Salmonella enterica strain PNUSAS352634 SAMN35530475-rid18250603.denovo.46, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOHMD010000071.1 Salmonella enterica strain PNUSAS352634 SAMN35530475-rid18250603.guided.47, whole genome shotgun sequence	6097..7296	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOHMD010000049.1 Salmonella enterica strain PNUSAS352634 SAMN35530475-rid18250603.denovo.54, whole genome shotgun sequence	371..501	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOHMD010000050.1 Salmonella enterica strain PNUSAS352634 SAMN35530475-rid18250603.denovo.55, whole genome shotgun sequence	3134..3264		enterobacteriales	IncC	100	417 / 417	ABOHMD010000030.1 Salmonella enterica strain PNUSAS352634 SAMN35530475-rid18250603.denovo.30, whole genome shotgun sequence	38349..38765		enterobacteriales	IncI2	100	324 / 324	ABOHMD010000024.1 Salmonella enterica strain PNUSAS352634 SAMN35530475-rid18250603.denovo.24, whole genome shotgun sequence	30068..30391																																		avrA	ABOHMD010000004.1	102350..103219	99.885	870	0						
GCA_033000105.1_PDT001765451.1_genomic.fna	Salmonella_enterica	0.5218	229.312 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHME010000001.1 Salmonella enterica strain PNUSAS352640 SAMN35530476-rid18250593.denovo.01, whole genome shotgun sequence	380041..380478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHME010000042.1 Salmonella enterica strain PNUSAS352640 SAMN35530476-rid18250593.guided.33, whole genome shotgun sequence	22163..22600	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHME010000002.1	218734..219602	99.77	870	0						
GCA_033000125.1_PDT001765450.1_genomic.fna	Salmonella_enterica	0.5226	190.638 KB	7	aroC_14,dnaN_178,hemD_3,hisD_12,purE_182,sucA_171,thrA_143	603	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_178	hemD	100	100	hemD_3	hisD	100	100	hisD_12	purE	100	100	purE_182	sucA	100	100	sucA_171	thrA	100	100	thrA_143	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOHMF010000005.1 Salmonella enterica strain PNUSAS352637 SAMN35530472-rid18250583.denovo.05, whole genome shotgun sequence	354722..355159	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOHMF010000037.1 Salmonella enterica strain PNUSAS352637 SAMN35530472-rid18250583.guided.27, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHMF010000002.1	149954..150823	99.77	870	0						
GCA_033000145.1_PDT001765447.1_genomic.fna	Salmonella_enterica	0.5217	209.029 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHMI010000006.1 Salmonella enterica strain PNUSAS352636 SAMN35530473-rid18250553.denovo.06, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHMI010000051.1 Salmonella enterica strain PNUSAS352636 SAMN35530473-rid18250553.guided.42, whole genome shotgun sequence	2137..2574	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOHMI010000026.1 Salmonella enterica strain PNUSAS352636 SAMN35530473-rid18250553.denovo.26, whole genome shotgun sequence	44718..45360	enterobacteriales	IncFII(S)	100	262 / 262	ABOHMI010000026.1 Salmonella enterica strain PNUSAS352636 SAMN35530473-rid18250553.denovo.26, whole genome shotgun sequence	29372..29633																																																avrA	ABOHMI010000003.1	175018..175886	100	869	0						
GCA_033000155.1_PDT001765449.1_genomic.fna	Salmonella_enterica	0.5214	400.829 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHMG010000001.1 Salmonella enterica strain PNUSAS352635 SAMN35530474-rid18250573.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHMG010000034.1 Salmonella enterica strain PNUSAS352635 SAMN35530474-rid18250573.guided.27, whole genome shotgun sequence	3193..3630	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHMG010000023.1 Salmonella enterica strain PNUSAS352635 SAMN35530474-rid18250573.denovo.23, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOHMG010000026.1 Salmonella enterica strain PNUSAS352635 SAMN35530474-rid18250573.denovo.26, whole genome shotgun sequence	3402..3663																																																avrA	ABOHMG010000002.1	553414..554283	99.54	870	0						
GCA_033000185.1_PDT001765448.1_genomic.fna	Salmonella_enterica	0.5191	229.556 KB	6	aroC_487,dnaN_46,hemD_38,hisD_384,purE_403,sucA_284,thrA_504	2047	6,14:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(Cf),IncFII(SARC14)	aroC	100	100	aroC_487	dnaN	100	100	dnaN_46	hemD	100	100	hemD_38	hisD	100	100	hisD_384	purE	100	100	purE_403	sucA	100	100	sucA_284	thrA	100	100	thrA_504	6,14	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Teko		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHMH010000001.1 Salmonella enterica strain PNUSAS352630 SAMN35530470-rid18250563.denovo.01, whole genome shotgun sequence	12709..13146	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHMH010000049.1 Salmonella enterica strain PNUSAS352630 SAMN35530470-rid18250563.guided.36, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Cf)	90.69	247 / 258	ABOHMH010000012.1 Salmonella enterica strain PNUSAS352630 SAMN35530470-rid18250563.denovo.12, whole genome shotgun sequence	103394..103639	enterobacteriales	IncFII(SARC14)	99.55	445 / 445	ABOHMH010000012.1 Salmonella enterica strain PNUSAS352630 SAMN35530470-rid18250563.denovo.12, whole genome shotgun sequence	103900..104344																																																avrA	ABOHMH010000003.1	162269..163138	99.54	870	0						
GCA_033000205.1_PDT001765446.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHMJ010000001.1 Salmonella enterica strain PNUSAS352639 SAMN35530477-rid18250543.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHMJ010000029.1 Salmonella enterica strain PNUSAS352639 SAMN35530477-rid18250543.guided.24, whole genome shotgun sequence	895..1332	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHMJ010000021.1 Salmonella enterica strain PNUSAS352639 SAMN35530477-rid18250543.denovo.22, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOHMJ010000018.1 Salmonella enterica strain PNUSAS352639 SAMN35530477-rid18250543.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABOHMJ010000002.1	553648..554517	99.54	870	0						
GCA_033000225.1_PDT001765445.1_genomic.fna	Salmonella_enterica	0.5214	375.662 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHMK010000001.1 Salmonella enterica strain PNUSAS352638 SAMN35530471-rid18250533.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHMK010000032.1 Salmonella enterica strain PNUSAS352638 SAMN35530471-rid18250533.guided.25, whole genome shotgun sequence	909..1346	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABOHMK010000026.1 Salmonella enterica strain PNUSAS352638 SAMN35530471-rid18250533.denovo.29, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHMK010000021.1 Salmonella enterica strain PNUSAS352638 SAMN35530471-rid18250533.denovo.21, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABOHMK010000022.1 Salmonella enterica strain PNUSAS352638 SAMN35530471-rid18250533.denovo.24, whole genome shotgun sequence	3392..3653																																									avrA	ABOHMK010000002.1	553635..554504	99.54	870	0						
GCA_033000245.1_PDT001765443.1_genomic.fna	Salmonella_enterica	0.5214	278.67 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		3	Col(pHAD28),Col440I,ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHMM010000001.1 Salmonella enterica strain PNUSAS352627 SAMN35530463-rid18250513.denovo.01, whole genome shotgun sequence	584201..584638	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHMM010000038.1 Salmonella enterica strain PNUSAS352627 SAMN35530463-rid18250513.denovo.41, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHMM010000038.1 Salmonella enterica strain PNUSAS352627 SAMN35530463-rid18250513.denovo.41, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOHMM010000056.1 Salmonella enterica strain PNUSAS352627 SAMN35530463-rid18250513.guided.42, whole genome shotgun sequence	3294..3731	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHMM010000057.1 Salmonella enterica strain PNUSAS352627 SAMN35530463-rid18250513.guided.44, whole genome shotgun sequence	2868..3704	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHMM010000057.1 Salmonella enterica strain PNUSAS352627 SAMN35530463-rid18250513.guided.44, whole genome shotgun sequence	2065..2868	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOHMM010000043.1 Salmonella enterica strain PNUSAS352627 SAMN35530463-rid18250513.denovo.49, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOHMM010000058.1 Salmonella enterica strain PNUSAS352627 SAMN35530463-rid18250513.guided.48, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOHMM010000038.1 Salmonella enterica strain PNUSAS352627 SAMN35530463-rid18250513.denovo.41, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOHMM010000057.1 Salmonella enterica strain PNUSAS352627 SAMN35530463-rid18250513.guided.44, whole genome shotgun sequence	1189..2004	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOHMM010000032.1 Salmonella enterica strain PNUSAS352627 SAMN35530463-rid18250513.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOHMM010000054.1 Salmonella enterica strain PNUSAS352627 SAMN35530463-rid18250513.guided.34, whole genome shotgun sequence	6749..7954	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	91.15	113 / 131	ABOHMM010000039.1 Salmonella enterica strain PNUSAS352627 SAMN35530463-rid18250513.denovo.43, whole genome shotgun sequence	1410..1522	enterobacteriales	Col440I	93.64	110 / 114	ABOHMM010000041.1 Salmonella enterica strain PNUSAS352627 SAMN35530463-rid18250513.denovo.46, whole genome shotgun sequence	1566..1675		enterobacteriales	ColRNAI	90.08	131 / 130	ABOHMM010000036.1 Salmonella enterica strain PNUSAS352627 SAMN35530463-rid18250513.denovo.39, whole genome shotgun sequence	3981..4111																																									avrA	ABOHMM010000015.1	93863..94732	99.885	870	0						
GCA_033000265.1_PDT001765444.1_genomic.fna	Salmonella_enterica	0.5226	316.256 KB	6	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHML010000001.1 Salmonella enterica strain PNUSAS352628 SAMN35530462-rid18250523.denovo.01, whole genome shotgun sequence	378840..379277	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHML010000035.1 Salmonella enterica strain PNUSAS352628 SAMN35530462-rid18250523.guided.24, whole genome shotgun sequence	12444..12881	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOHML010000025.1 Salmonella enterica strain PNUSAS352628 SAMN35530462-rid18250523.denovo.28, whole genome shotgun sequence	2209..2339																																																						avrA	ABOHML010000011.1	36960..37829	99.425	870	0						
GCA_033000275.1_PDT001765442.1_genomic.fna	Salmonella_enterica	0.5212	406.452 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHMN010000001.1 Salmonella enterica strain PNUSAS352633 SAMN35530467-rid18250503.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHMN010000029.1 Salmonella enterica strain PNUSAS352633 SAMN35530467-rid18250503.guided.21, whole genome shotgun sequence	680..1117	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHMN010000018.1 Salmonella enterica strain PNUSAS352633 SAMN35530467-rid18250503.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOHMN010000020.1 Salmonella enterica strain PNUSAS352633 SAMN35530467-rid18250503.denovo.22, whole genome shotgun sequence	3392..3653																																																avrA	ABOHMN010000002.1	585348..586217	99.54	870	0						
GCA_033000305.1_PDT001765441.1_genomic.fna	Salmonella_enterica	0.5206	400.844 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHMO010000001.1 Salmonella enterica strain PNUSAS352624 SAMN35530466-rid18250493.denovo.01, whole genome shotgun sequence	774378..774815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHMO010000030.1 Salmonella enterica strain PNUSAS352624 SAMN35530466-rid18250493.guided.22, whole genome shotgun sequence	10203..10640	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHMO010000020.1 Salmonella enterica strain PNUSAS352624 SAMN35530466-rid18250493.denovo.20, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOHMO010000021.1 Salmonella enterica strain PNUSAS352624 SAMN35530466-rid18250493.denovo.23, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.93	374 / 374	ABOHMO010000015.1 Salmonella enterica strain PNUSAS352624 SAMN35530466-rid18250493.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABOHMO010000002.1	553682..554551	99.54	870	0						
GCA_033000325.1_PDT001765440.1_genomic.fna	Salmonella_enterica	0.5198	147.624 KB	10	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHMP010000001.1 Salmonella enterica strain PNUSAS352626 SAMN35530464-rid18250483.denovo.01, whole genome shotgun sequence	411751..412188	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHMP010000089.1 Salmonella enterica strain PNUSAS352626 SAMN35530464-rid18250483.guided.57, whole genome shotgun sequence	4984..5421	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABOHMP010000047.1 Salmonella enterica strain PNUSAS352626 SAMN35530464-rid18250483.denovo.47, whole genome shotgun sequence	14445..15087	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABOHMP010000042.1 Salmonella enterica strain PNUSAS352626 SAMN35530464-rid18250483.denovo.42, whole genome shotgun sequence	20816..21408																																																avrA	ABOHMP010000011.1	61932..62801	99.425	870	0						
GCA_033000345.1_PDT001765439.1_genomic.fna	Salmonella_enterica	0.5219	201.53 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,floR,floR,sul1,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHMQ010000001.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOHMQ010000030.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.denovo.30, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHMQ010000030.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.denovo.30, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOHMQ010000043.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.denovo.48, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOHMQ010000043.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.denovo.48, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOHMQ010000047.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.denovo.57, whole genome shotgun sequence	93..908	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	aadA1	99.62	792/792	ABOHMQ010000059.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.guided.38, whole genome shotgun sequence	83..874	Spectinomycin, Streptomycin	JX185132	aadA1	99.62	792/792	ABOHMQ010000059.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.guided.38, whole genome shotgun sequence	83..874	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOHMQ010000060.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.guided.39, whole genome shotgun sequence	83..874	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHMQ010000060.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.guided.39, whole genome shotgun sequence	83..874	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOHMQ010000062.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.guided.45, whole genome shotgun sequence	4181..4618	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOHMQ010000067.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.guided.54, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOHMQ010000067.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.guided.54, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOHMQ010000068.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.guided.56, whole genome shotgun sequence	127..942	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	floR	98.19	1214/1215	ABOHMQ010000041.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.denovo.44, whole genome shotgun sequence	3320..4533	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOHMQ010000065.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.guided.51, whole genome shotgun sequence	1015..2228	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOHMQ010000030.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.denovo.30, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABOHMQ010000059.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.guided.38, whole genome shotgun sequence	1379..2218	Sulfamethoxazole	U12338	sul1	100	840/840	ABOHMQ010000060.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.guided.39, whole genome shotgun sequence	1379..2218	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOHMQ010000030.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.denovo.30, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOHMQ010000064.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.guided.50, whole genome shotgun sequence	1273..2472	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOHMQ010000040.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.denovo.43, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOHMQ010000063.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.guided.47, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																							gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOHMQ010000034.1 Salmonella enterica strain PNUSAS352625 SAMN35530465-rid18250473.denovo.34, whole genome shotgun sequence	9109..9668																																																						avrA	ABOHMQ010000004.1	94085..94954	99.655	870	0						
GCA_033000365.1_PDT001765438.1_genomic.fna	Salmonella_enterica	0.5228	397.494 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHMR010000001.1 Salmonella enterica strain PNUSAS352631 SAMN35530469-rid18250463.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHMR010000028.1 Salmonella enterica strain PNUSAS352631 SAMN35530469-rid18250463.guided.18, whole genome shotgun sequence	4390..4827	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHMR010000005.1	183135..184004	98.966	870	0						
GCA_033000385.1_PDT001765437.1_genomic.fna	Salmonella_enterica	0.523	514.318 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOHMS010000001.1 Salmonella enterica strain PNUSAS352629 SAMN35530461-rid18250453.denovo.01, whole genome shotgun sequence	666962..667399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOHMS010000026.1 Salmonella enterica strain PNUSAS352629 SAMN35530461-rid18250453.guided.21, whole genome shotgun sequence	3282..3719	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHMS010000003.1	508583..509452	99.31	870	0						
GCA_033000425.1_PDT001765436.1_genomic.fna	Salmonella_enterica	0.5182	160.485 KB	8	aroC_18,dnaN_14,hemD_12,hisD_9,purE_5,sucA_18,thrA_21	36	4:i:1,2	12	aac(6')-Iaa,aadA2,aadA1,aadA2,aadA1,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,floR,cmlA1,qnrS1,qnrS1,sul2,sul3,sul2,sul3,tet(A),tet(M),tet(A),tet(M),dfrA12,dfrA12	0		4	Col156,IncFIA(HI1),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_18	dnaN	100	100	dnaN_14	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_18	thrA	100	100	thrA_21	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHMT010000001.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.denovo.01, whole genome shotgun sequence	301200..301637	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOHMT010000040.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.denovo.40, whole genome shotgun sequence	2969..3760	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOHMT010000040.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.denovo.40, whole genome shotgun sequence	564..1355	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOHMT010000064.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.guided.46, whole genome shotgun sequence	1880..2671	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOHMT010000067.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.guided.54, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABOHMT010000071.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.guided.65, whole genome shotgun sequence	421..858	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOHMT010000042.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.denovo.43, whole genome shotgun sequence	6136..6996	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOHMT010000061.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.guided.42, whole genome shotgun sequence	6177..7037	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOHMT010000040.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.denovo.40, whole genome shotgun sequence	1448..2707	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOHMT010000045.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.denovo.49, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOHMT010000064.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.guided.46, whole genome shotgun sequence	2933..4192	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOHMT010000066.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.guided.53, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOHMT010000067.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.guided.54, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	qnrS1	100	657/657	ABOHMT010000042.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.denovo.43, whole genome shotgun sequence	118..774	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOHMT010000061.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.guided.42, whole genome shotgun sequence	159..815	Ciprofloxacin	AB187515	sul2	100	816/816	ABOHMT010000049.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.denovo.58, whole genome shotgun sequence	329..1144	Sulfamethoxazole	AY034138	sul3	100	792/792	ABOHMT010000050.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.denovo.60, whole genome shotgun sequence	74..865	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABOHMT010000069.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.guided.56, whole genome shotgun sequence	1898..2713	Sulfamethoxazole	AY034138	sul3	100	792/792	ABOHMT010000070.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.guided.59, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(A)	99.92	1200/1200	ABOHMT010000046.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.denovo.51, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	ABOHMT010000048.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.denovo.57, whole genome shotgun sequence	831..2750	Doxycycline, Tetracycline, Minocycline	X04388	tet(A)	99.92	1200/1200	ABOHMT010000065.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.guided.50, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790	tet(M)	96.15	1920/1920	ABOHMT010000068.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.guided.55, whole genome shotgun sequence	872..2791	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABOHMT010000040.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.denovo.40, whole genome shotgun sequence	4168..4665	Trimethoprim	AM040708	dfrA12	100	498/498	ABOHMT010000064.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.guided.46, whole genome shotgun sequence	975..1472	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																													enterobacteriales	Col156	96.75	154 / 154	ABOHMT010000043.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.denovo.47, whole genome shotgun sequence	608..761	enterobacteriales	IncFIA(HI1)	100	388 / 388	ABOHMT010000023.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.denovo.23, whole genome shotgun sequence	11420..11807		enterobacteriales	IncHI1A	100	420 / 420	ABOHMT010000019.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.denovo.19, whole genome shotgun sequence	80413..80832		enterobacteriales	IncHI1B(R27)	100	540 / 540	ABOHMT010000019.1 Salmonella enterica strain PNUSAS352632 SAMN35530468-rid18250443.denovo.19, whole genome shotgun sequence	66797..67336	R27																																	avrA	ABOHMT010000005.1	175661..176530	99.885	870	0						
GCA_033000685.1_PDT001765415.1_genomic.fna	Salmonella_enterica	0.5205	375.075 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHND010000001.1 Salmonella enterica strain PNUSAS352585 SAMN35529908-rid18249583.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHND010000032.1 Salmonella enterica strain PNUSAS352585 SAMN35529908-rid18249583.guided.21, whole genome shotgun sequence	17772..18209	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHND010000020.1 Salmonella enterica strain PNUSAS352585 SAMN35529908-rid18249583.denovo.22, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOHND010000022.1 Salmonella enterica strain PNUSAS352585 SAMN35529908-rid18249583.denovo.25, whole genome shotgun sequence	654..915		enterobacteriales	IncX1	98.93	374 / 374	ABOHND010000016.1 Salmonella enterica strain PNUSAS352585 SAMN35529908-rid18249583.denovo.16, whole genome shotgun sequence	32011..32384																																									avrA	ABOHND010000007.1	174756..175625	99.54	870	0						
GCA_033000715.1_PDT001765412.1_genomic.fna	Salmonella_enterica	0.521	455.616 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHNH010000005.1 Salmonella enterica strain PNUSAS352583 SAMN35529907-rid18247903.denovo.05, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHNH010000028.1 Salmonella enterica strain PNUSAS352583 SAMN35529907-rid18247903.guided.17, whole genome shotgun sequence	1820..2257	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHNH010000019.1 Salmonella enterica strain PNUSAS352583 SAMN35529907-rid18247903.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOHNH010000016.1 Salmonella enterica strain PNUSAS352583 SAMN35529907-rid18247903.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABOHNH010000001.1	585275..586144	99.54	870	0						
GCA_033000905.1_PDT001765403.1_genomic.fna	Salmonella_enterica	0.5219	393.834 KB	5	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHNP010000002.1 Salmonella enterica strain PNUSAS352584 SAMN35529910-rid18250383.denovo.02, whole genome shotgun sequence	172166..172603	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOHNP010000029.1 Salmonella enterica strain PNUSAS352584 SAMN35529910-rid18250383.guided.21, whole genome shotgun sequence	8080..8517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHNP010000001.1	149620..150489	99.77	870	0						
GCA_033001105.1_PDT001765392.1_genomic.fna	Salmonella_enterica	0.5204	225.631 KB	7	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHNZ010000001.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322288 SAMN35529772-rid18249493.denovo.01, whole genome shotgun sequence	110416..110853	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHNZ010000045.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322288 SAMN35529772-rid18249493.guided.27, whole genome shotgun sequence	12451..12888	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOHNZ010000037.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322288 SAMN35529772-rid18249493.denovo.40, whole genome shotgun sequence	1708..1838																																																						avrA	ABOHNZ010000012.1	162692..163561	98.966	870	0						
GCA_033001375.1_PDT001952326.1_genomic.fna	Salmonella_enterica	0.5214	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHCL010000001.1 Salmonella enterica strain PNUSAS394820 SAMN37932570-rid19942223.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHCL010000025.1 Salmonella enterica strain PNUSAS394820 SAMN37932570-rid19942223.guided.13, whole genome shotgun sequence	41765..42202	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHCL010000016.1 Salmonella enterica strain PNUSAS394820 SAMN37932570-rid19942223.denovo.19, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABOHCL010000018.1 Salmonella enterica strain PNUSAS394820 SAMN37932570-rid19942223.denovo.21, whole genome shotgun sequence	3380..3641																																																avrA	ABOHCL010000002.1	505461..506330	99.54	870	0						
GCA_033001415.1_PDT001952328.1_genomic.fna	Salmonella_enterica	0.5212	696.605 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHCI010000001.1 Salmonella enterica strain PNUSAS394821 SAMN37932573-rid19942243.denovo.01, whole genome shotgun sequence	774376..774813	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHCI010000024.1 Salmonella enterica strain PNUSAS394821 SAMN37932573-rid19942243.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHCI010000017.1 Salmonella enterica strain PNUSAS394821 SAMN37932573-rid19942243.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOHCI010000019.1 Salmonella enterica strain PNUSAS394821 SAMN37932573-rid19942243.denovo.22, whole genome shotgun sequence	3402..3663																																																avrA	ABOHCI010000002.1	553636..554505	99.54	870	0						
GCA_033003655.1_PDT001952552.1_genomic.fna	Salmonella_enterica	0.5211	285.519 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHOM010000001.1 Salmonella enterica strain PNUSAS394406 SAMN37937793-rid19944003.denovo.01, whole genome shotgun sequence	177252..177689	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHOM010000028.1 Salmonella enterica strain PNUSAS394406 SAMN37937793-rid19944003.guided.22, whole genome shotgun sequence	18723..19160	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOHOM010000018.1 Salmonella enterica strain PNUSAS394406 SAMN37937793-rid19944003.denovo.18, whole genome shotgun sequence	5790..6323																																																						avrA	ABOHOM010000002.1	563244..564113	99.77	870	0						
GCA_033003675.1_PDT001952553.1_genomic.fna	Salmonella_enterica	0.5217	344.516 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_40	Unknown	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_40	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHOL010000001.1 Salmonella enterica strain PNUSAS394395 SAMN37937797-rid19944493.denovo.01, whole genome shotgun sequence	170667..171104	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHOL010000049.1 Salmonella enterica strain PNUSAS394395 SAMN37937797-rid19944493.guided.20, whole genome shotgun sequence	5448..5885	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOHOL010000031.1 Salmonella enterica strain PNUSAS394395 SAMN37937797-rid19944493.denovo.34, whole genome shotgun sequence	4503..5145	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOHOL010000027.1 Salmonella enterica strain PNUSAS394395 SAMN37937797-rid19944493.denovo.30, whole genome shotgun sequence	10978..11204																																																avrA	ABOHOL010000002.1	120799..121668	99.31	870	0						
GCA_033003695.1_PDT001952551.1_genomic.fna	Salmonella_enterica	0.52	206.03 KB	9	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(S)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOHON010000002.1 Salmonella enterica strain PNUSAS394440 SAMN37937798-rid19944483.denovo.02, whole genome shotgun sequence	207396..207833	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOHON010000092.1 Salmonella enterica strain PNUSAS394440 SAMN37937798-rid19944483.guided.42, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOHON010000035.1 Salmonella enterica strain PNUSAS394440 SAMN37937798-rid19944483.denovo.36, whole genome shotgun sequence	11048..11690	enterobacteriales	IncFII(S)	92.37	262 / 262	ABOHON010000024.1 Salmonella enterica strain PNUSAS394440 SAMN37937798-rid19944483.denovo.24, whole genome shotgun sequence	27368..27626																																																											
GCA_033003715.1_PDT001952550.1_genomic.fna	Salmonella_enterica	0.5213	522.704 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOHOO010000003.1 Salmonella enterica strain PNUSAS394392 SAMN37937787-rid19943993.denovo.03, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOHOO010000022.1 Salmonella enterica strain PNUSAS394392 SAMN37937787-rid19943993.guided.17, whole genome shotgun sequence	7917..8354	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHOO010000002.1	160353..161222	99.54	870	0						
GCA_033003735.1_PDT001952549.1_genomic.fna	Salmonella_enterica	0.5221	493.399 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHOP010000001.1 Salmonella enterica strain PNUSAS394434 SAMN37937792-rid19944473.denovo.01, whole genome shotgun sequence	145171..145608	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOHOP010000024.1 Salmonella enterica strain PNUSAS394434 SAMN37937792-rid19944473.guided.16, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHOP010000005.1	400987..401845	98.506	870	0						
GCA_033003755.1_PDT001952547.1_genomic.fna	Salmonella_enterica	0.5211	525.159 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOHOR010000003.1 Salmonella enterica strain PNUSAS394439 SAMN37937790-rid19943983.denovo.03, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOHOR010000024.1 Salmonella enterica strain PNUSAS394439 SAMN37937790-rid19943983.guided.19, whole genome shotgun sequence	1814..2251	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHOR010000002.1	548111..548980	99.54	870	0						
GCA_033003775.1_PDT001952548.1_genomic.fna	Salmonella_enterica	0.521	421.395 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHOQ010000004.1 Salmonella enterica strain PNUSAS394459 SAMN37937788-rid19944463.denovo.04, whole genome shotgun sequence	162407..162844	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHOQ010000025.1 Salmonella enterica strain PNUSAS394459 SAMN37937788-rid19944463.guided.15, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHOQ010000015.1 Salmonella enterica strain PNUSAS394459 SAMN37937788-rid19944463.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOHOQ010000015.1 Salmonella enterica strain PNUSAS394459 SAMN37937788-rid19944463.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABOHOQ010000001.1	553077..553946	99.54	870	0						
GCA_033003795.1_PDT001952546.1_genomic.fna	Salmonella_enterica	0.5212	522.702 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOHOS010000003.1 Salmonella enterica strain PNUSAS394442 SAMN37937796-rid19944453.denovo.03, whole genome shotgun sequence	267313..267750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOHOS010000024.1 Salmonella enterica strain PNUSAS394442 SAMN37937796-rid19944453.guided.18, whole genome shotgun sequence	12662..13099	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHOS010000002.1	160325..161194	99.54	870	0						
GCA_033003815.1_PDT001952544.1_genomic.fna	Salmonella_enterica	0.5174	190.243 KB	9	aroC_488,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2058	48:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_488	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:z4,z32:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABOHOU010000034.1 Salmonella enterica strain PNUSAS394444 SAMN37937795-rid19944443.denovo.35, whole genome shotgun sequence	6573..7010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABOHOU010000075.1 Salmonella enterica strain PNUSAS394444 SAMN37937795-rid19944443.guided.42, whole genome shotgun sequence	4359..4796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOHOU010000013.1 Salmonella enterica strain PNUSAS394444 SAMN37937795-rid19944443.denovo.13, whole genome shotgun sequence	38587..39229																																																																	
GCA_033003835.1_PDT001952545.1_genomic.fna	Salmonella_enterica	0.5224	265.238 KB	7	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHOT010000003.1 Salmonella enterica strain PNUSAS394418 SAMN37937786-rid19943973.denovo.03, whole genome shotgun sequence	228414..228851	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHOT010000039.1 Salmonella enterica strain PNUSAS394418 SAMN37937786-rid19943973.guided.29, whole genome shotgun sequence	5471..5908	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033003855.1_PDT001952542.1_genomic.fna	Salmonella_enterica	0.5213	736.12 KB	3	aroC_41,dnaN_42,hemD_43,hisD_501,purE_9,sucA_12,thrA_2	1567	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_501	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHOW010000001.1 Salmonella enterica strain PNUSAS394438 SAMN37937791-rid19943963.denovo.01, whole genome shotgun sequence	671579..672016	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHOW010000023.1 Salmonella enterica strain PNUSAS394438 SAMN37937791-rid19943963.guided.18, whole genome shotgun sequence	12751..13188	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOHOW010000007.1 Salmonella enterica strain PNUSAS394438 SAMN37937791-rid19943963.denovo.07, whole genome shotgun sequence	38587..39229																																																						avrA	ABOHOW010000004.1	407693..408562	99.425	870	0						
GCA_033003875.1_PDT001952540.1_genomic.fna	Salmonella_enterica	0.5211	567.402 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOHOV010000001.1 Salmonella enterica strain PNUSAS394430 SAMN37937789-rid19943953.denovo.01, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOHOV010000022.1 Salmonella enterica strain PNUSAS394430 SAMN37937789-rid19943953.guided.16, whole genome shotgun sequence	29230..29667	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHOV010000002.1	160335..161204	99.54	870	0						
GCA_033003895.1_PDT001952538.1_genomic.fna	Salmonella_enterica	0.5225	142.826 KB	13	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOHOY010000010.1 Salmonella enterica strain PNUSAS394446 SAMN37937572-rid19944403.denovo.010, whole genome shotgun sequence	80673..81110	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOHOY010000128.1 Salmonella enterica strain PNUSAS394446 SAMN37937572-rid19944403.guided.047, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	94.66	262 / 262	ABOHOY010000067.1 Salmonella enterica strain PNUSAS394446 SAMN37937572-rid19944403.denovo.070, whole genome shotgun sequence	3188..3447	enterobacteriales	IncI1-I(Alpha)	98.6	143 / 142	ABOHOY010000048.1 Salmonella enterica strain PNUSAS394446 SAMN37937572-rid19944403.denovo.050, whole genome shotgun sequence	2268..2410																																																avrA	ABOHOY010000011.1	95191..96060	99.54	870	0						
GCA_033003915.1_PDT001952536.1_genomic.fna	Salmonella_enterica	0.5216	392.188 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHOZ010000005.1 Salmonella enterica strain PNUSAS394443 SAMN37937570-rid19944393.denovo.05, whole genome shotgun sequence	255135..255572	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHOZ010000044.1 Salmonella enterica strain PNUSAS394443 SAMN37937570-rid19944393.guided.24, whole genome shotgun sequence	9207..9644	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHOZ010000002.1	394786..395654	99.425	870	0						
GCA_033003935.1_PDT001952539.1_genomic.fna	Salmonella_enterica	0.5228	316.247 KB	5	aroC_43,dnaN_41,hemD_16,hisD_13,purE_12,sucA_13,thrA_4	195	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHOX010000005.1 Salmonella enterica strain PNUSAS394427 SAMN37937586-rid19944413.denovo.05, whole genome shotgun sequence	170032..170469	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHOX010000030.1 Salmonella enterica strain PNUSAS394427 SAMN37937586-rid19944413.guided.20, whole genome shotgun sequence	16693..17130	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033003955.1_PDT001952532.1_genomic.fna	Salmonella_enterica	0.5217	294.814 KB	6	aroC_13,dnaN_11,hemD_17,hisD_16,purE_13,sucA_60,thrA_4	140	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_60	thrA	100	100	thrA_4	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOHPC010000009.1 Salmonella enterica strain PNUSAS394394 SAMN37937571-rid19943913.denovo.09, whole genome shotgun sequence	75417..75854	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOHPC010000036.1 Salmonella enterica strain PNUSAS394394 SAMN37937571-rid19943913.guided.27, whole genome shotgun sequence	7925..8362	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHPC010000003.1	97186..98055	99.54	870	0						
GCA_033003975.1_PDT001952534.1_genomic.fna	Salmonella_enterica	0.5219	555.397 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHPB010000002.1 Salmonella enterica strain PNUSAS394422 SAMN37937579-rid19944383.denovo.02, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOHPB010000024.1 Salmonella enterica strain PNUSAS394422 SAMN37937579-rid19944383.guided.13, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHPB010000003.1	553430..554299	99.77	870	0						
GCA_033003995.1_PDT001952535.1_genomic.fna	Salmonella_enterica	0.5213	363.638 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHPA010000001.1 Salmonella enterica strain PNUSAS394436 SAMN37937588-rid19943933.denovo.01, whole genome shotgun sequence	137189..137626	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHPA010000037.1 Salmonella enterica strain PNUSAS394436 SAMN37937588-rid19943933.guided.24, whole genome shotgun sequence	9046..9483	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHPA010000010.1	140075..140943	99.195	870	0						
GCA_033004015.1_PDT001952529.1_genomic.fna	Salmonella_enterica	0.522	728.663 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHPD010000001.1 Salmonella enterica strain PNUSAS394426 SAMN37937582-rid19944363.denovo.01, whole genome shotgun sequence	385049..385486	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOHPD010000019.1 Salmonella enterica strain PNUSAS394426 SAMN37937582-rid19944363.guided.13, whole genome shotgun sequence	3910..4347	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHPD010000003.1	561692..562562	99.656	871	0						
GCA_033004035.1_PDT001952530.1_genomic.fna	Salmonella_enterica	0.5206	211.88 KB	7	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(SARC14),IncFII(Yp),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOHPE010000002.1 Salmonella enterica strain PNUSAS394468 SAMN37937584-rid19943903.denovo.02, whole genome shotgun sequence	239428..239865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOHPE010000052.1 Salmonella enterica strain PNUSAS394468 SAMN37937584-rid19943903.guided.22, whole genome shotgun sequence	4088..4525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOHPE010000035.1 Salmonella enterica strain PNUSAS394468 SAMN37937584-rid19943903.denovo.38, whole genome shotgun sequence	3433..4075	enterobacteriales	IncFII(SARC14)	94.62	446 / 445	ABOHPE010000026.1 Salmonella enterica strain PNUSAS394468 SAMN37937584-rid19943903.denovo.27, whole genome shotgun sequence	43394..43838		enterobacteriales	IncFII(Yp)	91.67	216 / 230	ABOHPE010000026.1 Salmonella enterica strain PNUSAS394468 SAMN37937584-rid19943903.denovo.27, whole genome shotgun sequence	44099..44313		enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOHPE010000031.1 Salmonella enterica strain PNUSAS394468 SAMN37937584-rid19943903.denovo.32, whole genome shotgun sequence	10978..11204																																													
GCA_033004055.1_PDT001952528.1_genomic.fna	Salmonella_enterica	0.5192	593.234 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncI2(Delta)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHPF010000001.1 Salmonella enterica strain PNUSAS394428 SAMN37937587-rid19944353.denovo.01, whole genome shotgun sequence	510577..511014	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHPF010000033.1 Salmonella enterica strain PNUSAS394428 SAMN37937587-rid19944353.guided.23, whole genome shotgun sequence	4832..5269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOHPF010000013.1 Salmonella enterica strain PNUSAS394428 SAMN37937587-rid19944353.denovo.13, whole genome shotgun sequence	34957..35490	enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABOHPF010000016.1 Salmonella enterica strain PNUSAS394428 SAMN37937587-rid19944353.denovo.16, whole genome shotgun sequence	29110..29431																																																avrA	ABOHPF010000003.1	498013..498881	99.425	870	0						
GCA_033004075.1_PDT001952525.1_genomic.fna	Salmonella_enterica	0.5213	522.68 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOHPG010000001.1 Salmonella enterica strain PNUSAS394411 SAMN37937577-rid19943883.denovo.01, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOHPG010000028.1 Salmonella enterica strain PNUSAS394411 SAMN37937577-rid19943883.guided.21, whole genome shotgun sequence	14343..14780	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHPG010000002.1	160347..161216	99.54	870	0						
GCA_033004095.1_PDT001952526.1_genomic.fna	Salmonella_enterica	0.5207	464.136 KB	4	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOHPH010000001.1 Salmonella enterica strain PNUSAS394420 SAMN37937575-rid19944343.denovo.01, whole genome shotgun sequence	469422..469859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOHPH010000055.1 Salmonella enterica strain PNUSAS394420 SAMN37937575-rid19944343.guided.19, whole genome shotgun sequence	13167..13604	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABOHPH010000024.1 Salmonella enterica strain PNUSAS394420 SAMN37937575-rid19944343.denovo.26, whole genome shotgun sequence	12704..13346	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABOHPH010000023.1 Salmonella enterica strain PNUSAS394420 SAMN37937575-rid19944343.denovo.25, whole genome shotgun sequence	21066..21658																																																avrA	ABOHPH010000009.1	109074..109942	99.425	870	0						
GCA_033004115.1_PDT001952523.1_genomic.fna	Salmonella_enterica	0.5223	501.158 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOHPJ010000001.1 Salmonella enterica strain PNUSAS394423 SAMN37937583-rid19943873.denovo.01, whole genome shotgun sequence	652653..653090	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOHPJ010000030.1 Salmonella enterica strain PNUSAS394423 SAMN37937583-rid19943873.guided.23, whole genome shotgun sequence	1276..1713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHPJ010000002.1	131917..132786	98.966	870	0						
GCA_033004125.1_PDT001952524.1_genomic.fna	Salmonella_enterica	0.5222	537.377 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHPI010000001.1 Salmonella enterica strain PNUSAS394445 SAMN37937574-rid19944333.denovo.01, whole genome shotgun sequence	1364587..1365024	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOHPI010000023.1 Salmonella enterica strain PNUSAS394445 SAMN37937574-rid19944333.guided.18, whole genome shotgun sequence	10355..10792	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHPI010000003.1	507676..508545	99.77	870	0						
GCA_033004155.1_PDT001952522.1_genomic.fna	Salmonella_enterica	0.5205	230.845 KB	7	aroC_188,dnaN_199,hemD_21,hisD_62,purE_36,sucA_39,thrA_190	735	8:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_188	dnaN	100	100	dnaN_199	hemD	100	100	hemD_21	hisD	100	100	hisD_62	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_190	8	z4,z32	-	Salmonella enterica subspecies enterica (subspecies I)	Tallahassee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHPK010000005.1 Salmonella enterica strain PNUSAS394424 SAMN37937581-rid19943863.denovo.05, whole genome shotgun sequence	42614..43051	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHPK010000064.1 Salmonella enterica strain PNUSAS394424 SAMN37937581-rid19943863.guided.34, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOHPK010000009.1 Salmonella enterica strain PNUSAS394424 SAMN37937581-rid19943863.denovo.09, whole genome shotgun sequence	27251..27893																																																						avrA	ABOHPK010000001.1	109343..110212	99.655	870	0						
GCA_033004175.1_PDT001952520.1_genomic.fna	Salmonella_enterica	0.5154	257.799 KB	7	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABOHPL010000010.1 Salmonella enterica strain PNUSAS394454 SAMN37937556-rid19943853.denovo.10, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABOHPL010000054.1 Salmonella enterica strain PNUSAS394454 SAMN37937556-rid19943853.guided.33, whole genome shotgun sequence	465..902	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOHPL010000013.1 Salmonella enterica strain PNUSAS394454 SAMN37937556-rid19943853.denovo.13, whole genome shotgun sequence	38587..39229																																																																	
GCA_033004195.1_PDT001952519.1_genomic.fna	Salmonella_enterica	0.5214	181.813 KB	8	aroC_13,dnaN_109,hemD_49,hisD_13,purE_220,sucA_13,thrA_4	754	30:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_220	sucA	100	100	sucA_13	thrA	100	100	thrA_4	30	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Urbana		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHPM010000029.1 Salmonella enterica strain PNUSAS394432 SAMN37937566-rid19944313.denovo.029, whole genome shotgun sequence	8382..8819	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHPM010000117.1 Salmonella enterica strain PNUSAS394432 SAMN37937566-rid19944313.guided.052, whole genome shotgun sequence	6398..6835	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABOHPM010000023.1 Salmonella enterica strain PNUSAS394432 SAMN37937566-rid19944313.denovo.023, whole genome shotgun sequence	14947..15589	enterobacteriales	IncI1-I(Alpha)	98.6	143 / 142	ABOHPM010000035.1 Salmonella enterica strain PNUSAS394432 SAMN37937566-rid19944313.denovo.035, whole genome shotgun sequence	15197..15339																																																avrA	ABOHPM010000001.1	113069..113938	99.425	870	0						
GCA_033004215.1_PDT001952516.1_genomic.fna	Salmonella_enterica	0.5211	489.204 KB	3	aroC_50,dnaN_10,hemD_25,hisD_13,purE_10,sucA_13,thrA_4	93	4:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHPP010000002.1 Salmonella enterica strain PNUSAS394451 SAMN37937560-rid19944303.denovo.02, whole genome shotgun sequence	634034..634471	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHPP010000023.1 Salmonella enterica strain PNUSAS394451 SAMN37937560-rid19944303.guided.14, whole genome shotgun sequence	14346..14783	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHPP010000003.1	94142..95011	99.54	870	0						
GCA_033004235.1_PDT001952517.1_genomic.fna	Salmonella_enterica	0.5212	359.751 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHPO010000002.1 Salmonella enterica strain PNUSAS394452 SAMN37937562-rid19943833.denovo.02, whole genome shotgun sequence	407341..407778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHPO010000037.1 Salmonella enterica strain PNUSAS394452 SAMN37937562-rid19943833.guided.20, whole genome shotgun sequence	25971..26408	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHPO010000018.1	39466..40334	99.195	870	0						
GCA_033004255.1_PDT001952518.1_genomic.fna	Salmonella_enterica	0.5214	709.316 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOHPN010000001.1 Salmonella enterica strain PNUSAS394416 SAMN37937567-rid19943843.denovo.01, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOHPN010000022.1 Salmonella enterica strain PNUSAS394416 SAMN37937567-rid19943843.guided.16, whole genome shotgun sequence	2148..2585	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHPN010000003.1	160337..161206	99.54	870	0						
GCA_033004275.1_PDT001952513.1_genomic.fna	Salmonella_enterica	0.5218	371.392 KB	6	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHPR010000008.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.denovo.08, whole genome shotgun sequence	145366..145803	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOHPR010000030.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.denovo.34, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOHPR010000057.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.guided.18, whole genome shotgun sequence	22638..23075	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOHPR010000060.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.guided.33, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOHPR010000030.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.denovo.34, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOHPR010000060.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.guided.33, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOHPR010000029.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.denovo.32, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOHPR010000063.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.guided.43, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOHPR010000028.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.denovo.31, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOHPR010000061.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.guided.38, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOHPR010000030.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.denovo.34, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOHPR010000060.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.guided.33, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOHPR010000040.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.denovo.48, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOHPR010000064.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.guided.47, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOHPR010000028.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.denovo.31, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOHPR010000062.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.guided.39, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOHPR010000028.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.denovo.31, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOHPR010000062.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.guided.39, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOHPR010000024.1 Salmonella enterica strain PNUSAS394467 SAMN37937554-rid19943813.denovo.27, whole genome shotgun sequence	8402..8652																																																						avrA	ABOHPR010000004.1	138180..139049	99.77	870	0						
GCA_033004295.1_PDT001952510.1_genomic.fna	Salmonella_enterica	0.5206	406.057 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHPS010000001.1 Salmonella enterica strain PNUSAS394460 SAMN37937543-rid19944273.denovo.01, whole genome shotgun sequence	291615..292052	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHPS010000029.1 Salmonella enterica strain PNUSAS394460 SAMN37937543-rid19944273.guided.23, whole genome shotgun sequence	13349..13786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHPS010000018.1 Salmonella enterica strain PNUSAS394460 SAMN37937543-rid19944273.denovo.19, whole genome shotgun sequence	19181..19823	enterobacteriales	IncFII(S)	100	262 / 262	ABOHPS010000019.1 Salmonella enterica strain PNUSAS394460 SAMN37937543-rid19944273.denovo.20, whole genome shotgun sequence	4078..4339																																																avrA	ABOHPS010000002.1	552786..553655	99.54	870	0						
GCA_033004315.1_PDT001952515.1_genomic.fna	Salmonella_enterica	0.5211	720.961 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOHPQ010000001.1 Salmonella enterica strain PNUSAS394403 SAMN37937561-rid19943823.denovo.01, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOHPQ010000021.1 Salmonella enterica strain PNUSAS394403 SAMN37937561-rid19943823.guided.16, whole genome shotgun sequence	6432..6869	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHPQ010000004.1	160359..161228	99.54	870	0						
GCA_033004335.1_PDT001952506.1_genomic.fna	Salmonella_enterica	0.514	383.514 KB	6	aroC_33,dnaN_26,hemD_30,hisD_26,purE_21,sucA_32,thrA_28	63	60:r:e,n,x,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_21	sucA	100	100	sucA_32	thrA	100	100	thrA_28	60	r	e,n,x,z15	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 60:r:e,n,x,z15		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOHPV010000001.1 Salmonella enterica strain PNUSAS394391 SAMN37937544-rid19944243.denovo.01, whole genome shotgun sequence	453126..453563	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOHPV010000053.1 Salmonella enterica strain PNUSAS394391 SAMN37937544-rid19944243.guided.22, whole genome shotgun sequence	9058..9495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHPV010000002.1	108149..109018	96.667	870	0						
GCA_033004355.1_PDT001952509.1_genomic.fna	Salmonella_enterica	0.5213	478.495 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHPT010000001.1 Salmonella enterica strain PNUSAS394448 SAMN37937565-rid19944263.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHPT010000025.1 Salmonella enterica strain PNUSAS394448 SAMN37937565-rid19944263.guided.16, whole genome shotgun sequence	25505..25942	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABOHPT010000026.1 Salmonella enterica strain PNUSAS394448 SAMN37937565-rid19944263.guided.17, whole genome shotgun sequence	25505..25942	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHPT010000015.1 Salmonella enterica strain PNUSAS394448 SAMN37937565-rid19944263.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOHPT010000015.1 Salmonella enterica strain PNUSAS394448 SAMN37937565-rid19944263.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOHPT010000002.1	553187..554056	99.54	870	0						
GCA_033004375.1_PDT001952507.1_genomic.fna	Salmonella_enterica	0.5223	320.096 KB	6	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHPU010000004.1 Salmonella enterica strain PNUSAS394457 SAMN37937569-rid19943793.denovo.04, whole genome shotgun sequence	153916..154353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHPU010000031.1 Salmonella enterica strain PNUSAS394457 SAMN37937569-rid19943793.guided.17, whole genome shotgun sequence	16653..17090	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033004395.1_PDT001952505.1_genomic.fna	Salmonella_enterica	0.5219	378.933 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHPW010000002.1 Salmonella enterica strain PNUSAS394421 SAMN37937548-rid19943783.denovo.02, whole genome shotgun sequence	170660..171097	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHPW010000038.1 Salmonella enterica strain PNUSAS394421 SAMN37937548-rid19943783.guided.21, whole genome shotgun sequence	4346..4783	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHPW010000001.1	121197..122066	99.31	870	0						
GCA_033004415.1_PDT001952504.1_genomic.fna	Salmonella_enterica	0.5211	366.788 KB	5	aroC_41,dnaN_42,hemD_43,hisD_501,purE_9,sucA_12,thrA_2	1567	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_501	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHPX010000006.1 Salmonella enterica strain PNUSAS394456 SAMN37937564-rid19944233.denovo.06, whole genome shotgun sequence	218539..218976	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHPX010000048.1 Salmonella enterica strain PNUSAS394456 SAMN37937564-rid19944233.guided.17, whole genome shotgun sequence	36233..36670	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOHPX010000010.1 Salmonella enterica strain PNUSAS394456 SAMN37937564-rid19944233.denovo.10, whole genome shotgun sequence	38587..39229																																																						avrA	ABOHPX010000003.1	407667..408536	99.425	870	0						
GCA_033004435.1_PDT001952503.1_genomic.fna	Salmonella_enterica	0.521	382.677 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHPY010000001.1 Salmonella enterica strain PNUSAS394435 SAMN37937555-rid19943773.denovo.01, whole genome shotgun sequence	750593..751030	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHPY010000039.1 Salmonella enterica strain PNUSAS394435 SAMN37937555-rid19943773.guided.21, whole genome shotgun sequence	8783..9220	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHPY010000002.1	144854..145723	99.31	870	0						
GCA_033004455.1_PDT001952499.1_genomic.fna	Salmonella_enterica	0.521	171.947 KB	9	aroC_43,dnaN_41,hemD_16,hisD_85,purE_40,sucA_58,thrA_3	1392	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_3	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHQA010000003.1 Salmonella enterica strain PNUSAS394401 SAMN37937557-rid19944213.denovo.03, whole genome shotgun sequence	179130..179567	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHQA010000076.1 Salmonella enterica strain PNUSAS394401 SAMN37937557-rid19944213.guided.46, whole genome shotgun sequence	2362..2799	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOHQA010000023.1 Salmonella enterica strain PNUSAS394401 SAMN37937557-rid19944213.denovo.23, whole genome shotgun sequence	34270..34912																																																						avrA	ABOHQA010000002.1	100493..101362	99.54	870	0						
GCA_033004475.1_PDT001952500.1_genomic.fna	Salmonella_enterica	0.5204	340.478 KB	6	aroC_41,dnaN_42,hemD_43,hisD_612,purE_9,sucA_12,thrA_2	2229	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_612	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHPZ010000001.1 Salmonella enterica strain PNUSAS394415 SAMN37937550-rid19943753.denovo.01, whole genome shotgun sequence	530110..530547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHPZ010000066.1 Salmonella enterica strain PNUSAS394415 SAMN37937550-rid19943753.guided.30, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOHPZ010000027.1 Salmonella enterica strain PNUSAS394415 SAMN37937550-rid19943753.denovo.28, whole genome shotgun sequence	11451..12093	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABOHPZ010000026.1 Salmonella enterica strain PNUSAS394415 SAMN37937550-rid19943753.denovo.27, whole genome shotgun sequence	18874..19456																																																avrA	ABOHPZ010000004.1	134253..135122	99.425	870	0						
GCA_033004495.1_PDT001952498.1_genomic.fna	Salmonella_enterica	0.5212	522.704 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOHQB010000002.1 Salmonella enterica strain PNUSAS394398 SAMN37937553-rid19944203.denovo.02, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOHQB010000021.1 Salmonella enterica strain PNUSAS394398 SAMN37937553-rid19944203.guided.16, whole genome shotgun sequence	36708..37145	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHQB010000003.1	548111..548980	99.54	870	0						
GCA_033004515.1_PDT001952497.1_genomic.fna	Salmonella_enterica	0.5213	709.3 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOHQC010000001.1 Salmonella enterica strain PNUSAS394400 SAMN37937558-rid19943743.denovo.01, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOHQC010000018.1 Salmonella enterica strain PNUSAS394400 SAMN37937558-rid19943743.guided.13, whole genome shotgun sequence	30604..31041	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHQC010000003.1	160315..161184	99.54	870	0						
GCA_033004535.1_PDT001952495.1_genomic.fna	Salmonella_enterica	0.517	183.676 KB	9	aroC_488,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2058	48:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_488	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:z4,z32:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABOHQD010000035.1 Salmonella enterica strain PNUSAS394396 SAMN37937545-rid19943733.denovo.36, whole genome shotgun sequence	6573..7010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABOHQD010000071.1 Salmonella enterica strain PNUSAS394396 SAMN37937545-rid19943733.guided.38, whole genome shotgun sequence	4359..4796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOHQD010000015.1 Salmonella enterica strain PNUSAS394396 SAMN37937545-rid19943733.denovo.15, whole genome shotgun sequence	38587..39229																																																																	
GCA_033004555.1_PDT001952496.1_genomic.fna	Salmonella_enterica	0.5204	306.925 KB	5	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_58,thrA_4	239	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_4	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHQE010000001.1 Salmonella enterica strain PNUSAS394414 SAMN37937546-rid19944193.denovo.01, whole genome shotgun sequence	207659..208096	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHQE010000064.1 Salmonella enterica strain PNUSAS394414 SAMN37937546-rid19944193.guided.31, whole genome shotgun sequence	792..1229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOHQE010000028.1 Salmonella enterica strain PNUSAS394414 SAMN37937546-rid19944193.denovo.29, whole genome shotgun sequence	11465..12107																																																																	
GCA_033004575.1_PDT001952494.1_genomic.fna	Salmonella_enterica	0.5217	388.726 KB	5	aroC_13,dnaN_80,hemD_25,hisD_16,purE_40,sucA_58,thrA_4	2152	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_4	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHQF010000007.1 Salmonella enterica strain PNUSAS394437 SAMN37937542-rid19944183.denovo.07, whole genome shotgun sequence	149287..149724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHQF010000031.1 Salmonella enterica strain PNUSAS394437 SAMN37937542-rid19944183.guided.22, whole genome shotgun sequence	2787..3224	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033004595.1_PDT001952493.1_genomic.fna	Salmonella_enterica	0.5222	241.694 KB	6	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHQG010000003.1 Salmonella enterica strain PNUSAS394465 SAMN37937547-rid19943723.denovo.03, whole genome shotgun sequence	258786..259223	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHQG010000031.1 Salmonella enterica strain PNUSAS394465 SAMN37937547-rid19943723.guided.24, whole genome shotgun sequence	8108..8545	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHQG010000002.1	410794..411663	99.77	870	0						
GCA_033004615.1_PDT001952492.1_genomic.fna	Salmonella_enterica	0.5225	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHQH010000001.1 Salmonella enterica strain PNUSAS394409 SAMN37937535-rid19943713.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHQH010000031.1 Salmonella enterica strain PNUSAS394409 SAMN37937535-rid19943713.guided.17, whole genome shotgun sequence	9811..10248	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHQH010000002.1	129887..130756	98.966	870	0						
GCA_033004635.1_PDT001952543.1_genomic.fna	Salmonella_enterica	0.5212	255.333 KB	7	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHQJ010000009.1 Salmonella enterica strain PNUSAS394413 SAMN37937785-rid19944433.denovo.09, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHQJ010000053.1 Salmonella enterica strain PNUSAS394413 SAMN37937785-rid19944433.guided.19, whole genome shotgun sequence	9841..10278	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHQJ010000002.1	125491..126359	99.31	870	0						
GCA_033004655.1_PDT001952490.1_genomic.fna	Salmonella_enterica	0.5209	404.891 KB	4	aroC_180,dnaN_161,hemD_132,hisD_21,purE_12,sucA_13,thrA_4	532	16:d:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_180	dnaN	100	100	dnaN_161	hemD	100	100	hemD_132	hisD	100	100	hisD_21	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	16	d	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Barranquilla		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHQI010000002.1 Salmonella enterica strain PNUSAS394399 SAMN37937531-rid19943703.denovo.02, whole genome shotgun sequence	180132..180569	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHQI010000043.1 Salmonella enterica strain PNUSAS394399 SAMN37937531-rid19943703.guided.21, whole genome shotgun sequence	13328..13765	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHQI010000003.1	140338..141207	99.54	870	0						
GCA_033004675.1_PDT001952533.1_genomic.fna	Salmonella_enterica	0.5204	268.077 KB	5	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHQL010000002.1 Salmonella enterica strain PNUSAS394425 SAMN37937580-rid19943923.denovo.02, whole genome shotgun sequence	594922..595359	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHQL010000029.1 Salmonella enterica strain PNUSAS394425 SAMN37937580-rid19943923.guided.20, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHQL010000001.1	554730..555599	99.195	870	0						
GCA_033004695.1_PDT001952531.1_genomic.fna	Salmonella_enterica	0.5221	281.738 KB	5	aroC_127,dnaN_81,hemD_111,hisD_564,purE_39,sucA_226,thrA_41	2225	13:b:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_127	dnaN	100	100	dnaN_81	hemD	100	100	hemD_111	hisD	100	100	hisD_564	purE	100	100	purE_39	sucA	100	100	sucA_226	thrA	100	100	thrA_41	13	b	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Durham		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOHQM010000001.1 Salmonella enterica strain PNUSAS394464 SAMN37937578-rid19944373.denovo.01, whole genome shotgun sequence	307628..308065	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOHQM010000047.1 Salmonella enterica strain PNUSAS394464 SAMN37937578-rid19944373.guided.26, whole genome shotgun sequence	2005..2442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHQM010000003.1	140459..141328	98.966	870	0						
GCA_033004715.1_PDT001952541.1_genomic.fna	Salmonella_enterica	0.5211	430.002 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHQK010000001.1 Salmonella enterica strain PNUSAS394441 SAMN37937794-rid19944423.denovo.01, whole genome shotgun sequence	562533..562970	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHQK010000033.1 Salmonella enterica strain PNUSAS394441 SAMN37937794-rid19944423.guided.15, whole genome shotgun sequence	12662..13099	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHQK010000011.1	95244..96112	99.195	870	0						
GCA_033004735.1_PDT001952512.1_genomic.fna	Salmonella_enterica	0.5198	207.206 KB	9	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHQN010000019.1 Salmonella enterica strain PNUSAS394458 SAMN37937551-rid19943803.denovo.19, whole genome shotgun sequence	80571..81008	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHQN010000054.1 Salmonella enterica strain PNUSAS394458 SAMN37937551-rid19943803.guided.33, whole genome shotgun sequence	1318..1755	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHQN010000005.1	155278..156147	99.31	870	0						
GCA_033004755.1_PDT001952502.1_genomic.fna	Salmonella_enterica	0.5174	216.001 KB	8	aroC_488,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2058	48:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_488	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:z4,z32:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABOHQP010000030.1 Salmonella enterica strain PNUSAS394447 SAMN37937568-rid19943763.denovo.31, whole genome shotgun sequence	6573..7010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABOHQP010000054.1 Salmonella enterica strain PNUSAS394447 SAMN37937568-rid19943763.guided.34, whole genome shotgun sequence	4359..4796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOHQP010000014.1 Salmonella enterica strain PNUSAS394447 SAMN37937568-rid19943763.denovo.14, whole genome shotgun sequence	38587..39229																																																																	
GCA_033004775.1_PDT001952508.1_genomic.fna	Salmonella_enterica	0.5171	194.724 KB	9	aroC_488,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2058	48:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_488	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:z4,z32:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABOHQO010000036.1 Salmonella enterica strain PNUSAS394397 SAMN37937552-rid19944253.denovo.38, whole genome shotgun sequence	6573..7010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABOHQO010000072.1 Salmonella enterica strain PNUSAS394397 SAMN37937552-rid19944253.guided.42, whole genome shotgun sequence	4181..4618	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOHQO010000013.1 Salmonella enterica strain PNUSAS394397 SAMN37937552-rid19944253.denovo.13, whole genome shotgun sequence	38587..39229																																																																	
GCA_033004795.1_PDT001952501.1_genomic.fna	Salmonella_enterica	0.522	460.187 KB	4	aroC_127,dnaN_81,hemD_111,hisD_564,purE_39,sucA_226,thrA_41	2225	13:b:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_127	dnaN	100	100	dnaN_81	hemD	100	100	hemD_111	hisD	100	100	hisD_564	purE	100	100	purE_39	sucA	100	100	sucA_226	thrA	100	100	thrA_41	13	b	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Durham		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOHQQ010000001.1 Salmonella enterica strain PNUSAS394449 SAMN37937549-rid19944223.denovo.01, whole genome shotgun sequence	308850..309287	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOHQQ010000037.1 Salmonella enterica strain PNUSAS394449 SAMN37937549-rid19944223.guided.25, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHQQ010000003.1	140409..141278	98.966	870	0						
GCA_033004815.1_PDT001952491.1_genomic.fna	Salmonella_enterica	0.5215	144.396 KB	10	aroC_41,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	2129	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHQR010000002.1 Salmonella enterica strain PNUSAS394466 SAMN37937540-rid19944173.denovo.02, whole genome shotgun sequence	53021..53458	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHQR010000057.1 Salmonella enterica strain PNUSAS394466 SAMN37937540-rid19944173.guided.25, whole genome shotgun sequence	29214..29651	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033004835.1_PDT001952489.1_genomic.fna	Salmonella_enterica	0.5213	406.877 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87G	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHQS010000001.1 Salmonella enterica strain PNUSAS394453 SAMN37937539-rid19944163.denovo.01, whole genome shotgun sequence	812540..812977	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHQS010000028.1 Salmonella enterica strain PNUSAS394453 SAMN37937539-rid19944163.guided.20, whole genome shotgun sequence	262..699	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHQS010000016.1 Salmonella enterica strain PNUSAS394453 SAMN37937539-rid19944163.denovo.16, whole genome shotgun sequence	48367..49009	enterobacteriales	IncFII(S)	100	262 / 262	ABOHQS010000016.1 Salmonella enterica strain PNUSAS394453 SAMN37937539-rid19944163.denovo.16, whole genome shotgun sequence	4114..4375																																																avrA	ABOHQS010000002.1	552753..553622	99.54	870	0						
GCA_033004855.1_PDT001952488.1_genomic.fna	Salmonella_enterica	0.5203	720.839 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	pXuzhou21	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOHQT010000001.1 Salmonella enterica strain PNUSAS394419 SAMN37937532-rid19944153.denovo.01, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOHQT010000025.1 Salmonella enterica strain PNUSAS394419 SAMN37937532-rid19944153.guided.19, whole genome shotgun sequence	11710..12147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	pXuzhou21	91.92	718 / 720	ABOHQT010000014.1 Salmonella enterica strain PNUSAS394419 SAMN37937532-rid19944153.denovo.14, whole genome shotgun sequence	16989..17706																																																						avrA	ABOHQT010000004.1	160338..161207	99.54	870	0						
GCA_033004875.1_PDT001952487.1_genomic.fna	Salmonella_enterica	0.5165	371.349 KB	5	aroC_145,dnaN_26,hemD_30,hisD_144,purE_21,sucA_145,thrA_28	430	61:i:z53	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_145	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_144	purE	100	100	purE_21	sucA	100	100	sucA_145	thrA	100	100	thrA_28	61	i	z53	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:i:z53		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOHQV010000002.1 Salmonella enterica strain PNUSAS394431 SAMN37937537-rid19943693.denovo.02, whole genome shotgun sequence	112038..112475	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOHQV010000046.1 Salmonella enterica strain PNUSAS394431 SAMN37937537-rid19943693.guided.26, whole genome shotgun sequence	12777..13214	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHQV010000001.1	144686..145555	96.437	870	0						
GCA_033004895.1_PDT001952484.1_genomic.fna	Salmonella_enterica	0.5205	231.039 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOHQU010000001.1 Salmonella enterica strain PNUSAS394450 SAMN37937526-rid19944133.denovo.01, whole genome shotgun sequence	619874..620311	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOHQU010000062.1 Salmonella enterica strain PNUSAS394450 SAMN37937526-rid19944133.guided.24, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABOHQU010000026.1 Salmonella enterica strain PNUSAS394450 SAMN37937526-rid19944133.denovo.27, whole genome shotgun sequence	12646..13288	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABOHQU010000025.1 Salmonella enterica strain PNUSAS394450 SAMN37937526-rid19944133.denovo.26, whole genome shotgun sequence	21066..21658																																																avrA	ABOHQU010000010.1	95198..96066	99.425	870	0						
GCA_033004915.1_PDT001952482.1_genomic.fna	Salmonella_enterica	0.5192	207.8 KB	8	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHQX010000001.1 Salmonella enterica strain PNUSAS394417 SAMN37937527-rid19943663.denovo.01, whole genome shotgun sequence	411209..411646	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHQX010000080.1 Salmonella enterica strain PNUSAS394417 SAMN37937527-rid19943663.guided.31, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABOHQX010000035.1 Salmonella enterica strain PNUSAS394417 SAMN37937527-rid19943663.denovo.37, whole genome shotgun sequence	14445..15087																																																						avrA	ABOHQX010000006.1	140447..141316	99.425	870	0						
GCA_033004935.1_PDT001952481.1_genomic.fna	Salmonella_enterica	0.5219	391.763 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHQY010000001.1 Salmonella enterica strain PNUSAS394463 SAMN37937524-rid19944123.denovo.01, whole genome shotgun sequence	170660..171097	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHQY010000029.1 Salmonella enterica strain PNUSAS394463 SAMN37937524-rid19944123.guided.21, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHQY010000003.1	121197..122066	99.31	870	0						
GCA_033004955.1_PDT001952483.1_genomic.fna	Salmonella_enterica	0.52	350.898 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pCRY),IncI(Gamma)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHQW010000007.1 Salmonella enterica strain PNUSAS394405 SAMN37937536-rid19943673.denovo.07, whole genome shotgun sequence	83341..83778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHQW010000049.1 Salmonella enterica strain PNUSAS394405 SAMN37937536-rid19943673.guided.29, whole genome shotgun sequence	1872..2309	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABOHQW010000024.1 Salmonella enterica strain PNUSAS394405 SAMN37937536-rid19943673.denovo.24, whole genome shotgun sequence	21147..21739	enterobacteriales	IncI(Gamma)	100	137 / 141	ABOHQW010000017.1 Salmonella enterica strain PNUSAS394405 SAMN37937536-rid19943673.denovo.17, whole genome shotgun sequence	77314..77450																																																											
GCA_033004975.1_PDT001952478.1_genomic.fna	Salmonella_enterica	0.5211	404.714 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOHQZ010000001.1 Salmonella enterica strain PNUSAS394461 SAMN37937534-rid19944103.denovo.01, whole genome shotgun sequence	264235..264672	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOHQZ010000035.1 Salmonella enterica strain PNUSAS394461 SAMN37937534-rid19944103.guided.21, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOHQZ010000022.1 Salmonella enterica strain PNUSAS394461 SAMN37937534-rid19944103.denovo.23, whole genome shotgun sequence	4582..5224	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOHQZ010000024.1 Salmonella enterica strain PNUSAS394461 SAMN37937534-rid19944103.denovo.25, whole genome shotgun sequence	10978..11204																																																											
GCA_033004995.1_PDT001952477.1_genomic.fna	Salmonella_enterica	0.521	193.187 KB	10	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHRA010000005.1 Salmonella enterica strain PNUSAS394429 SAMN37937525-rid19943643.denovo.05, whole genome shotgun sequence	170669..171106	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHRA010000098.1 Salmonella enterica strain PNUSAS394429 SAMN37937525-rid19943643.guided.48, whole genome shotgun sequence	14969..15406	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOHRA010000044.1 Salmonella enterica strain PNUSAS394429 SAMN37937525-rid19943643.denovo.44, whole genome shotgun sequence	17106..17748	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABOHRA010000042.1 Salmonella enterica strain PNUSAS394429 SAMN37937525-rid19943643.denovo.42, whole genome shotgun sequence	21066..21658																																																avrA	ABOHRA010000003.1	94213..95082	99.425	870	0						
GCA_033005015.1_PDT001952475.1_genomic.fna	Salmonella_enterica	0.5207	270.981 KB	7	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOHRC010000002.1 Salmonella enterica strain PNUSAS394410 SAMN37937528-rid19943633.denovo.02, whole genome shotgun sequence	264290..264727	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOHRC010000042.1 Salmonella enterica strain PNUSAS394410 SAMN37937528-rid19943633.guided.29, whole genome shotgun sequence	14358..14795	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOHRC010000031.1 Salmonella enterica strain PNUSAS394410 SAMN37937528-rid19943633.denovo.33, whole genome shotgun sequence	3409..4051	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOHRC010000028.1 Salmonella enterica strain PNUSAS394410 SAMN37937528-rid19943633.denovo.28, whole genome shotgun sequence	10978..11204																																																											
GCA_033005035.1_PDT001952476.1_genomic.fna	Salmonella_enterica	0.5211	272.081 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHRB010000001.1 Salmonella enterica strain PNUSAS394408 SAMN37937538-rid19944093.denovo.01, whole genome shotgun sequence	418157..418594	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHRB010000034.1 Salmonella enterica strain PNUSAS394408 SAMN37937538-rid19944093.guided.18, whole genome shotgun sequence	24984..25421	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHRB010000012.1	183692..184560	99.195	870	0						
GCA_033005655.1_PDT001952521.1_genomic.fna	Salmonella_enterica	0.521	484.573 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOHRN010000001.1 Salmonella enterica strain PNUSAS394412 SAMN37937576-rid19944323.denovo.01, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOHRN010000022.1 Salmonella enterica strain PNUSAS394412 SAMN37937576-rid19944323.guided.16, whole genome shotgun sequence	13834..14271	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHRN010000002.1	160456..161325	99.54	870	0						
GCA_033005675.1_PDT001952511.1_genomic.fna	Salmonella_enterica	0.5214	456.285 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHRO010000001.1 Salmonella enterica strain PNUSAS394404 SAMN37937563-rid19944283.denovo.01, whole genome shotgun sequence	593527..593964	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHRO010000023.1 Salmonella enterica strain PNUSAS394404 SAMN37937563-rid19944283.guided.16, whole genome shotgun sequence	4271..4708	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHRO010000003.1	509479..510347	99.425	870	0						
GCA_033007675.1_PDT001952537.1_genomic.fna	Salmonella_enterica	0.5213	210.879 KB	7	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOHRR010000001.1 Salmonella enterica strain PNUSAS394393 SAMN37937573-rid19943943.denovo.01, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOHRR010000068.1 Salmonella enterica strain PNUSAS394393 SAMN37937573-rid19943943.guided.35, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHRR010000016.1	39457..40326	99.655	870	0						
GCA_033007695.1_PDT001952486.1_genomic.fna	Salmonella_enterica	0.5224	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHRQ010000001.1 Salmonella enterica strain PNUSAS394407 SAMN37937533-rid19944143.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHRQ010000027.1 Salmonella enterica strain PNUSAS394407 SAMN37937533-rid19944143.guided.16, whole genome shotgun sequence	9834..10271	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHRQ010000002.1	28833..29702	98.966	870	0						
GCA_033007715.1_PDT001952485.1_genomic.fna	Salmonella_enterica	0.5236	260.662 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHRT010000001.1 Salmonella enterica strain PNUSAS394433 SAMN37937523-rid19943683.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHRT010000043.1 Salmonella enterica strain PNUSAS394433 SAMN37937523-rid19943683.guided.27, whole genome shotgun sequence	5554..5991	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHRT010000004.1	39430..40299	99.655	870	0						
GCA_033007735.1_PDT001952480.1_genomic.fna	Salmonella_enterica	0.521	381.609 KB	5	aroC_13,dnaN_11,hemD_315,hisD_15,purE_12,sucA_15,thrA_4	1675	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_315	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHRS010000008.1 Salmonella enterica strain PNUSAS394462 SAMN37937529-rid19943653.denovo.08, whole genome shotgun sequence	149396..149833	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHRS010000030.1 Salmonella enterica strain PNUSAS394462 SAMN37937529-rid19943653.guided.16, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033007755.1_PDT001952479.1_genomic.fna	Salmonella_enterica	0.5171	190.553 KB	9	aroC_703,dnaN_176,hemD_580,hisD_22,purE_18,sucA_67,thrA_91	3767	47:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(SARC14)	aroC	100	100	aroC_703	dnaN	100	100	dnaN_176	hemD	100	100	hemD_580	hisD	100	100	hisD_22	purE	100	100	purE_18	sucA	100	100	sucA_67	thrA	100	100	thrA_91	47	b	-	Salmonella enterica subspecies salamae (subspecies II)	II 47:b:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	95.43	438/438	ABOHRU010000006.1 Salmonella enterica strain PNUSAS394455 SAMN37937530-rid19944113.denovo.06, whole genome shotgun sequence	98732..99169	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.43	438/438	ABOHRU010000066.1 Salmonella enterica strain PNUSAS394455 SAMN37937530-rid19944113.guided.44, whole genome shotgun sequence	5476..5913	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(SARC14)	94.62	446 / 445	ABOHRU010000031.1 Salmonella enterica strain PNUSAS394455 SAMN37937530-rid19944113.denovo.31, whole genome shotgun sequence	12009..12453																																																																	
GCA_033008775.1_PDT001952527.1_genomic.fna	Salmonella_enterica	0.5188	192.4 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(pB171),IncFII(Yp),IncHI1A(NDM-CIT),IncHI1B(R27)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHRW010000006.1 Salmonella enterica strain PNUSAS394469 SAMN37937585-rid19943893.denovo.06, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHRW010000059.1 Salmonella enterica strain PNUSAS394469 SAMN37937585-rid19943893.guided.43, whole genome shotgun sequence	8698..9135	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	90.82	643 / 643	ABOHRW010000039.1 Salmonella enterica strain PNUSAS394469 SAMN37937585-rid19943893.denovo.39, whole genome shotgun sequence	17979..18621	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOHRW010000041.1 Salmonella enterica strain PNUSAS394469 SAMN37937585-rid19943893.denovo.41, whole genome shotgun sequence	10979..11205		enterobacteriales	IncHI1A(NDM-CIT)	91.19	420 / 420	ABOHRW010000009.1 Salmonella enterica strain PNUSAS394469 SAMN37937585-rid19943893.denovo.09, whole genome shotgun sequence	92150..92569		enterobacteriales	IncHI1B(R27)	93.33	540 / 540	ABOHRW010000009.1 Salmonella enterica strain PNUSAS394469 SAMN37937585-rid19943893.denovo.09, whole genome shotgun sequence	106685..107224	R27																																	avrA	ABOHRW010000005.1	39707..40575	99.77	870	0						
GCA_033011575.1_PDT001952318.1_genomic.fna	Salmonella_enterica	0.5193	285.096 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHSB010000001.1 Salmonella enterica strain PNUSAS394837 SAMN37932650-rid19942143.denovo.01, whole genome shotgun sequence	486126..486563	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHSB010000038.1 Salmonella enterica strain PNUSAS394837 SAMN37932650-rid19942143.guided.26, whole genome shotgun sequence	21754..22191	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOHSB010000005.1 Salmonella enterica strain PNUSAS394837 SAMN37932650-rid19942143.denovo.05, whole genome shotgun sequence	268078..268500	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOHSB010000041.1 Salmonella enterica strain PNUSAS394837 SAMN37932650-rid19942143.guided.34, whole genome shotgun sequence	4862..5284	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHSB010000002.1	175728..176597	99.195	870	0						
GCA_033011615.1_PDT001952319.1_genomic.fna	Salmonella_enterica	0.5193	224.781 KB	6	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHSA010000002.1 Salmonella enterica strain PNUSAS394840 SAMN37932648-rid19942153.denovo.02, whole genome shotgun sequence	386386..386823	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHSA010000044.1 Salmonella enterica strain PNUSAS394840 SAMN37932648-rid19942153.guided.25, whole genome shotgun sequence	20589..21026	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033011655.1_PDT001952317.1_genomic.fna	Salmonella_enterica	0.5211	348.663 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,sul2,sul2,tet(A),tet(A),tet(A)	1	gyrA_p.S83Y	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHSC010000003.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.denovo.03, whole genome shotgun sequence	159434..159871	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHSC010000022.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.denovo.22, whole genome shotgun sequence	26369..27205	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHSC010000022.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.denovo.22, whole genome shotgun sequence	25566..26369	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOHSC010000037.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.guided.28, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHSC010000040.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.guided.33, whole genome shotgun sequence	3231..4067	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHSC010000040.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.guided.33, whole genome shotgun sequence	2428..3231	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOHSC010000041.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.guided.34, whole genome shotgun sequence	3230..4066	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHSC010000041.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.guided.34, whole genome shotgun sequence	2427..3230	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOHSC010000028.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.denovo.31, whole genome shotgun sequence	2089..3234	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOHSC010000039.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.guided.32, whole genome shotgun sequence	1161..2306	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOHSC010000022.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.denovo.22, whole genome shotgun sequence	30341..31554	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOHSC010000042.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.guided.37, whole genome shotgun sequence	199..1412	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOHSC010000022.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.denovo.22, whole genome shotgun sequence	24690..25505	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOHSC010000040.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.guided.33, whole genome shotgun sequence	1552..2367	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABOHSC010000041.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.guided.34, whole genome shotgun sequence	1552..2366	Sulfamethoxazole	AY232670	sul2	99.88	816/816	ABOHSC010000041.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.guided.34, whole genome shotgun sequence	1552..2366	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOHSC010000022.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.denovo.22, whole genome shotgun sequence	28466..29740	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOHSC010000040.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.guided.33, whole genome shotgun sequence	5328..6602	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOHSC010000041.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.guided.34, whole genome shotgun sequence	5327..6601	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																			gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncC	100	417 / 417	ABOHSC010000025.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.denovo.26, whole genome shotgun sequence	15025..15441	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOHSC010000021.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.denovo.21, whole genome shotgun sequence	16902..17161		enterobacteriales	IncX1	98.66	374 / 374	ABOHSC010000026.1 Salmonella enterica strain PNUSAS394839 SAMN37932652-rid19942133.denovo.27, whole genome shotgun sequence	8572..8945																																									avrA	ABOHSC010000005.1	173544..174412	99.54	870	0						
GCA_033011775.1_PDT001952312.1_genomic.fna	Salmonella_enterica	0.521	401.722 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHSH010000004.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.denovo.04, whole genome shotgun sequence	159451..159888	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHSH010000021.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.denovo.21, whole genome shotgun sequence	28247..29083	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHSH010000021.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.denovo.21, whole genome shotgun sequence	27444..28247	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOHSH010000031.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.denovo.39, whole genome shotgun sequence	137..952	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	aac(6')-Iaa	98.63	438/438	ABOHSH010000036.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.guided.25, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHSH010000038.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.guided.30, whole genome shotgun sequence	2968..3804	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHSH010000038.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.guided.30, whole genome shotgun sequence	2165..2968	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOHSH010000042.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.guided.38, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	blaCMY-2	100	1146/1146	ABOHSH010000024.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.denovo.27, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOHSH010000026.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.denovo.29, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOHSH010000026.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.denovo.29, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOHSH010000026.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.denovo.29, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOHSH010000040.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.guided.34, whole genome shotgun sequence	1773..2918	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOHSH010000041.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.guided.36, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOHSH010000041.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.guided.36, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOHSH010000041.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.guided.36, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABOHSH010000021.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.denovo.21, whole genome shotgun sequence	32219..33432	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOHSH010000039.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.guided.33, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOHSH010000021.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.denovo.21, whole genome shotgun sequence	26568..27383	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOHSH010000038.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.guided.30, whole genome shotgun sequence	1289..2104	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOHSH010000021.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.denovo.21, whole genome shotgun sequence	30344..31618	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOHSH010000038.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.guided.30, whole genome shotgun sequence	5065..6339	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncC	100	417 / 417	ABOHSH010000020.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.denovo.20, whole genome shotgun sequence	17491..17907	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOHSH010000016.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.denovo.16, whole genome shotgun sequence	16902..17161		enterobacteriales	IncX1	98.66	374 / 374	ABOHSH010000016.1 Salmonella enterica strain PNUSAS394826 SAMN37932554-rid19942103.denovo.16, whole genome shotgun sequence	52756..53129																																									avrA	ABOHSH010000001.1	505419..506287	99.54	870	0						
GCA_033011995.1_PDT001952299.1_genomic.fna	Salmonella_enterica	0.5212	489.496 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHSU010000001.1 Salmonella enterica strain PNUSAS394819 SAMN37932572-rid19942053.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHSU010000023.1 Salmonella enterica strain PNUSAS394819 SAMN37932572-rid19942053.guided.18, whole genome shotgun sequence	13054..13491	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHSU010000016.1 Salmonella enterica strain PNUSAS394819 SAMN37932572-rid19942053.denovo.17, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOHSU010000018.1 Salmonella enterica strain PNUSAS394819 SAMN37932572-rid19942053.denovo.20, whole genome shotgun sequence	3404..3665																																																avrA	ABOHSU010000002.1	553635..554504	99.54	870	0						
GCA_033012015.1_PDT001952300.1_genomic.fna	Salmonella_enterica	0.5214	322.455 KB	6	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHSR010000004.1 Salmonella enterica strain PNUSAS394827 SAMN37932569-rid19941903.denovo.04, whole genome shotgun sequence	380331..380768	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHSR010000034.1 Salmonella enterica strain PNUSAS394827 SAMN37932569-rid19941903.guided.27, whole genome shotgun sequence	4899..5336	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033012045.1_PDT001952297.1_genomic.fna	Salmonella_enterica	0.5212	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pSL483	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHSW010000001.1 Salmonella enterica strain PNUSAS394823 SAMN37932574-rid19942043.denovo.01, whole genome shotgun sequence	830081..830518	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHSW010000026.1 Salmonella enterica strain PNUSAS394823 SAMN37932574-rid19942043.guided.19, whole genome shotgun sequence	12429..12866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pSL483	98.79	995 / 995	ABOHSW010000015.1 Salmonella enterica strain PNUSAS394823 SAMN37932574-rid19942043.denovo.17, whole genome shotgun sequence	3564..4558																																																						avrA	ABOHSW010000002.1	183878..184747	98.966	870	0						
GCA_033012075.1_PDT001952295.1_genomic.fna	Salmonella_enterica	0.52	278.671 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	3	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,tet(B),tet(B)	0		5	Col(pHAD28),Col156,Col440I,Col440I,ColpVC,IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHTA010000001.1 Salmonella enterica strain PNUSAS394824 SAMN37932568-rid19941873.denovo.01, whole genome shotgun sequence	491054..491491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHTA010000056.1 Salmonella enterica strain PNUSAS394824 SAMN37932568-rid19941873.guided.34, whole genome shotgun sequence	3966..4403	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOHTA010000046.1 Salmonella enterica strain PNUSAS394824 SAMN37932568-rid19941873.denovo.49, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOHTA010000060.1 Salmonella enterica strain PNUSAS394824 SAMN37932568-rid19941873.guided.53, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(B)	100	1206/1206	ABOHTA010000002.1 Salmonella enterica strain PNUSAS394824 SAMN37932568-rid19941873.denovo.02, whole genome shotgun sequence	625944..627149	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOHTA010000057.1 Salmonella enterica strain PNUSAS394824 SAMN37932568-rid19941873.guided.35, whole genome shotgun sequence	4510..5715	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOHTA010000041.1 Salmonella enterica strain PNUSAS394824 SAMN37932568-rid19941873.denovo.44, whole genome shotgun sequence	186..316	enterobacteriales	Col156	94.81	154 / 154	ABOHTA010000042.1 Salmonella enterica strain PNUSAS394824 SAMN37932568-rid19941873.denovo.45, whole genome shotgun sequence	792..945		enterobacteriales	Col440I	93.81	113 / 114	ABOHTA010000043.1 Salmonella enterica strain PNUSAS394824 SAMN37932568-rid19941873.denovo.46, whole genome shotgun sequence	1333..1444		enterobacteriales	Col440I	93.64	110 / 114	ABOHTA010000044.1 Salmonella enterica strain PNUSAS394824 SAMN37932568-rid19941873.denovo.47, whole genome shotgun sequence	1568..1677		enterobacteriales	ColpVC	98.45	193 / 193	ABOHTA010000047.1 Salmonella enterica strain PNUSAS394824 SAMN37932568-rid19941873.denovo.51, whole genome shotgun sequence	519..711		enterobacteriales	IncY	99.74	765 / 765	ABOHTA010000016.1 Salmonella enterica strain PNUSAS394824 SAMN37932568-rid19941873.denovo.16, whole genome shotgun sequence	70841..71605																				avrA	ABOHTA010000002.1	540631..541500	99.885	870	0						
GCA_033012095.1_PDT001952296.1_genomic.fna	Salmonella_enterica	0.5212	489.487 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHSY010000001.1 Salmonella enterica strain PNUSAS394822 SAMN37932571-rid19941883.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHSY010000023.1 Salmonella enterica strain PNUSAS394822 SAMN37932571-rid19941883.guided.18, whole genome shotgun sequence	8024..8461	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHSY010000016.1 Salmonella enterica strain PNUSAS394822 SAMN37932571-rid19941883.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOHSY010000017.1 Salmonella enterica strain PNUSAS394822 SAMN37932571-rid19941883.denovo.19, whole genome shotgun sequence	3423..3684																																																avrA	ABOHSY010000002.1	553636..554505	99.54	870	0						
GCA_033012115.1_PDT001952294.1_genomic.fna	Salmonella_enterica	0.5215	379.7 KB	5	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOHSZ010000001.1 Salmonella enterica strain PNUSAS394825 SAMN37932565-rid19942033.denovo.01, whole genome shotgun sequence	790765..791202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOHSZ010000026.1 Salmonella enterica strain PNUSAS394825 SAMN37932565-rid19942033.guided.19, whole genome shotgun sequence	12404..12841	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOHSZ010000018.1 Salmonella enterica strain PNUSAS394825 SAMN37932565-rid19942033.denovo.21, whole genome shotgun sequence	239..369	enterobacteriales	Col440I	94.59	111 / 114	ABOHSZ010000020.1 Salmonella enterica strain PNUSAS394825 SAMN37932565-rid19942033.denovo.23, whole genome shotgun sequence	3175..3285																																																avrA	ABOHSZ010000007.1	175930..176799	99.425	870	0						
GCA_033012135.1_PDT001952293.1_genomic.fna	Salmonella_enterica	0.5212	412.51 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHTB010000001.1 Salmonella enterica strain PNUSAS394816 SAMN37932566-rid19941863.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHTB010000025.1 Salmonella enterica strain PNUSAS394816 SAMN37932566-rid19941863.guided.20, whole genome shotgun sequence	9924..10361	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHTB010000018.1 Salmonella enterica strain PNUSAS394816 SAMN37932566-rid19941863.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOHTB010000019.1 Salmonella enterica strain PNUSAS394816 SAMN37932566-rid19941863.denovo.22, whole genome shotgun sequence	3423..3684																																																avrA	ABOHTB010000002.1	553636..554505	99.54	870	0						
GCA_033012175.1_PDT001952266.1_genomic.fna	Salmonella_enterica	0.5212	342.227 KB	6	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHTD010000007.1 Salmonella enterica strain PNUSAS394744 SAMN37931310-rid19941653.denovo.07, whole genome shotgun sequence	144753..145190	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHTD010000029.1 Salmonella enterica strain PNUSAS394744 SAMN37931310-rid19941653.guided.21, whole genome shotgun sequence	27318..27755	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOHTD010000018.1 Salmonella enterica strain PNUSAS394744 SAMN37931310-rid19941653.denovo.18, whole genome shotgun sequence	6323..6856																																																						avrA	ABOHTD010000014.1	39475..40344	99.77	870	0						
GCA_033012235.1_PDT001952267.1_genomic.fna	Salmonella_enterica	0.5213	203.764 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHTC010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325940 SAMN37931316-rid19941663.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOHTC010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325940 SAMN37931316-rid19941663.denovo.28, whole genome shotgun sequence	1311..2102	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHTC010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325940 SAMN37931316-rid19941663.denovo.28, whole genome shotgun sequence	1311..2102	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOHTC010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325940 SAMN37931316-rid19941663.guided.34, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHTC010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325940 SAMN37931316-rid19941663.guided.34, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOHTC010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325940 SAMN37931316-rid19941663.guided.37, whole genome shotgun sequence	7017..7454	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABOHTC010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325940 SAMN37931316-rid19941663.denovo.28, whole genome shotgun sequence	2607..3446	Sulfamethoxazole	U12338	sul1	100	840/840	ABOHTC010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325940 SAMN37931316-rid19941663.guided.34, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOHTC010000026.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325940 SAMN37931316-rid19941663.denovo.28, whole genome shotgun sequence	15963..17162	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOHTC010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325940 SAMN37931316-rid19941663.guided.34, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOHTC010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325940 SAMN37931316-rid19941663.denovo.39, whole genome shotgun sequence	9059..9618																																																						avrA	ABOHTC010000002.1	95321..96190	99.655	870	0						
GCA_033012355.1_PDT001952265.1_genomic.fna	Salmonella_enterica	0.5195	215.158 KB	9	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	4:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	4	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Eko		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHTE010000004.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12325939 SAMN37931313-rid19941643.denovo.04, whole genome shotgun sequence	230358..230795	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHTE010000063.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12325939 SAMN37931313-rid19941643.guided.30, whole genome shotgun sequence	31721..32158	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOHTE010000047.1 Salmonella enterica subsp. enterica serovar Eko strain FSIS12325939 SAMN37931313-rid19941643.denovo.50, whole genome shotgun sequence	2209..2339																																																						avrA	ABOHTE010000027.1	39350..40219	99.54	870	0						
GCA_033012375.1_PDT001952262.1_genomic.fna	Salmonella_enterica	0.5209	286.334 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHTJ010000001.1 Salmonella enterica strain PNUSAS394741 SAMN37931314-rid19941613.denovo.01, whole genome shotgun sequence	149349..149786	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHTJ010000029.1 Salmonella enterica strain PNUSAS394741 SAMN37931314-rid19941613.guided.21, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOHTJ010000022.1 Salmonella enterica strain PNUSAS394741 SAMN37931314-rid19941613.denovo.25, whole genome shotgun sequence	1251..1381																																																																	
GCA_033012395.1_PDT001952264.1_genomic.fna	Salmonella_enterica	0.522	199.057 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHTF010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325941 SAMN37931317-rid19941633.denovo.01, whole genome shotgun sequence	379546..379983	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHTF010000063.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325941 SAMN37931317-rid19941633.guided.37, whole genome shotgun sequence	12446..12883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOHTF010000043.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325941 SAMN37931317-rid19941633.denovo.44, whole genome shotgun sequence	6832..7474	enterobacteriales	IncFII(S)	100	262 / 262	ABOHTF010000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12325941 SAMN37931317-rid19941633.denovo.30, whole genome shotgun sequence	29395..29656																																																avrA	ABOHTF010000007.1	123454..124322	100	869	0						
GCA_033012415.1_PDT001952325.1_genomic.fna	Salmonella_enterica	0.5212	304.38 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHTM010000001.1 Salmonella enterica strain PNUSAS394828 SAMN37932567-rid19942213.denovo.01, whole genome shotgun sequence	542695..543132	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHTM010000028.1 Salmonella enterica strain PNUSAS394828 SAMN37932567-rid19942213.guided.22, whole genome shotgun sequence	11024..11461	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHTM010000020.1 Salmonella enterica strain PNUSAS394828 SAMN37932567-rid19942213.denovo.21, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOHTM010000021.1 Salmonella enterica strain PNUSAS394828 SAMN37932567-rid19942213.denovo.24, whole genome shotgun sequence	3402..3663																																																avrA	ABOHTM010000002.1	553636..554505	99.54	870	0						
GCA_033012435.1_PDT001952263.1_genomic.fna	Salmonella_enterica	0.5219	177.843 KB	8	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOHTG010000001.1 Salmonella enterica strain PNUSAS394743 SAMN37931311-rid19941623.denovo.01, whole genome shotgun sequence	261219..261656	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOHTG010000042.1 Salmonella enterica strain PNUSAS394743 SAMN37931311-rid19941623.guided.26, whole genome shotgun sequence	4346..4783	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033012455.1_PDT001952261.1_genomic.fna	Salmonella_enterica	0.5202	408.165 KB	5	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col440I,ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHTH010000001.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325905 SAMN37931224-rid19941603.denovo.01, whole genome shotgun sequence	492455..492892	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHTH010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325905 SAMN37931224-rid19941603.guided.25, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABOHTH010000030.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325905 SAMN37931224-rid19941603.denovo.33, whole genome shotgun sequence	2246..2354	enterobacteriales	ColpVC	98.96	193 / 193	ABOHTH010000031.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325905 SAMN37931224-rid19941603.denovo.34, whole genome shotgun sequence	519..711		enterobacteriales	IncI1-I(Alpha)	94.93	138 / 142	ABOHTH010000015.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325905 SAMN37931224-rid19941603.denovo.15, whole genome shotgun sequence	77437..77572																																									avrA	ABOHTH010000007.1	39622..40491	99.655	870	0						
GCA_033012475.1_PDT001952260.1_genomic.fna	Salmonella_enterica	0.5194	408.892 KB	5	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHTI010000002.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12325904 SAMN37931183-rid19941593.denovo.02, whole genome shotgun sequence	104534..104971	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHTI010000046.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12325904 SAMN37931183-rid19941593.guided.19, whole genome shotgun sequence	3633..4070	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.59	111 / 114	ABOHTI010000031.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12325904 SAMN37931183-rid19941593.denovo.34, whole genome shotgun sequence	158..268																																																						avrA	ABOHTI010000001.1	145601..146470	98.851	870	0						
GCA_033012495.1_PDT001952259.1_genomic.fna	Salmonella_enterica	0.5201	160.518 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHTK010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325901 SAMN37931180-rid19941583.denovo.01, whole genome shotgun sequence	460173..460610	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOHTK010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325901 SAMN37931180-rid19941583.denovo.33, whole genome shotgun sequence	1318..2109	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHTK010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325901 SAMN37931180-rid19941583.denovo.33, whole genome shotgun sequence	1318..2109	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOHTK010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325901 SAMN37931180-rid19941583.guided.48, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHTK010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325901 SAMN37931180-rid19941583.guided.48, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOHTK010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325901 SAMN37931180-rid19941583.guided.53, whole genome shotgun sequence	5559..5996	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABOHTK010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325901 SAMN37931180-rid19941583.denovo.33, whole genome shotgun sequence	2614..3453	Sulfamethoxazole	U12338	sul1	100	840/840	ABOHTK010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325901 SAMN37931180-rid19941583.guided.48, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOHTK010000031.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325901 SAMN37931180-rid19941583.denovo.33, whole genome shotgun sequence	15970..17169	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOHTK010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325901 SAMN37931180-rid19941583.guided.42, whole genome shotgun sequence	1864..3063	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOHTK010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325901 SAMN37931180-rid19941583.denovo.40, whole genome shotgun sequence	9109..9668																																																						avrA	ABOHTK010000005.1	149828..150697	99.655	870	0						
GCA_033013535.1_PDT001952608.1_genomic.fna	Salmonella_enterica	0.5215	386.705 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOHTO010000001.1 Salmonella enterica strain PNUSAS394874 SAMN37945692-rid19945053.denovo.01, whole genome shotgun sequence	622755..623192	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOHTO010000037.1 Salmonella enterica strain PNUSAS394874 SAMN37945692-rid19945053.guided.20, whole genome shotgun sequence	44319..44756	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHTO010000003.1	414682..415551	99.655	870	0						
GCA_033013555.1_PDT001952597.1_genomic.fna	Salmonella_enterica	0.5218	737.378 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHTP010000001.1 Salmonella enterica strain PNUSAS394793 SAMN37942583-rid19944943.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOHTP010000019.1 Salmonella enterica strain PNUSAS394793 SAMN37942583-rid19944943.guided.14, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHTP010000002.1	561740..562610	99.656	871	0						
GCA_033013575.1_PDT001952596.1_genomic.fna	Salmonella_enterica	0.5227	711.266 KB	3	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHTQ010000001.1 Salmonella enterica strain PNUSAS394794 SAMN37942582-rid19944933.denovo.01, whole genome shotgun sequence	396198..396635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHTQ010000032.1 Salmonella enterica strain PNUSAS394794 SAMN37942582-rid19944933.guided.24, whole genome shotgun sequence	10980..11417	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033013595.1_PDT001952594.1_genomic.fna	Salmonella_enterica	0.5208	695.727 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHTR010000001.1 Salmonella enterica strain PNUSAS394786 SAMN37942579-rid19944913.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHTR010000024.1 Salmonella enterica strain PNUSAS394786 SAMN37942579-rid19944913.guided.13, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033013615.1_PDT001952593.1_genomic.fna	Salmonella_enterica	0.5202	720.564 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHTS010000001.1 Salmonella enterica strain PNUSAS394791 SAMN37942578-rid19944903.denovo.01, whole genome shotgun sequence	414575..415012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHTS010000019.1 Salmonella enterica strain PNUSAS394791 SAMN37942578-rid19944903.guided.11, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033013635.1_PDT001952589.1_genomic.fna	Salmonella_enterica	0.5209	729.177 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHTV010000001.1 Salmonella enterica strain PNUSAS394788 SAMN37942577-rid19944863.denovo.01, whole genome shotgun sequence	645095..645532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOHTV010000019.1 Salmonella enterica strain PNUSAS394788 SAMN37942577-rid19944863.guided.11, whole genome shotgun sequence	21247..21684	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHTV010000004.1	140050..140920	99.656	871	0						
GCA_033013655.1_PDT001952590.1_genomic.fna	Salmonella_enterica	0.5215	394.277 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHTU010000001.1 Salmonella enterica strain PNUSAS394787 SAMN37942586-rid19944873.denovo.01, whole genome shotgun sequence	398391..398828	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHTU010000027.1 Salmonella enterica strain PNUSAS394787 SAMN37942586-rid19944873.guided.20, whole genome shotgun sequence	10617..11054	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHTU010000007.1	163189..164057	99.425	870	0						
GCA_033013675.1_PDT001952587.1_genomic.fna	Salmonella_enterica	0.5219	263.453 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHTY010000001.1 Salmonella enterica strain PNUSAS394795 SAMN37942585-rid19944843.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHTY010000038.1 Salmonella enterica strain PNUSAS394795 SAMN37942585-rid19944843.guided.27, whole genome shotgun sequence	21812..22249	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHTY010000004.1	149828..150697	99.655	870	0						
GCA_033013695.1_PDT001952591.1_genomic.fna	Salmonella_enterica	0.5192	269.597 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHTT010000001.1 Salmonella enterica strain PNUSAS394792 SAMN37942584-rid19944883.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHTT010000039.1 Salmonella enterica strain PNUSAS394792 SAMN37942584-rid19944883.guided.18, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHTT010000004.1	179442..180311	99.655	870	0						
GCA_033013715.1_PDT001952586.1_genomic.fna	Salmonella_enterica	0.5233	396.904 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHTW010000001.1 Salmonella enterica strain PNUSAS394789 SAMN37942580-rid19944833.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHTW010000030.1 Salmonella enterica strain PNUSAS394789 SAMN37942580-rid19944833.guided.18, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHTW010000002.1	149828..150697	99.655	870	0						
GCA_033013735.1_PDT001952584.1_genomic.fna	Salmonella_enterica	0.5226	423.797 KB	4	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHTX010000001.1 Salmonella enterica strain PNUSAS394798 SAMN37942573-rid19944813.denovo.01, whole genome shotgun sequence	141600..142037	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHTX010000024.1 Salmonella enterica strain PNUSAS394798 SAMN37942573-rid19944813.guided.18, whole genome shotgun sequence	10869..11306	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHTX010000003.1	437551..438420	98.966	870	0						
GCA_033013755.1_PDT001952583.1_genomic.fna	Salmonella_enterica	0.5208	364.175 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHTZ010000001.1 Salmonella enterica strain PNUSAS394790 SAMN37942575-rid19944803.denovo.01, whole genome shotgun sequence	562092..562529	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHTZ010000035.1 Salmonella enterica strain PNUSAS394790 SAMN37942575-rid19944803.guided.20, whole genome shotgun sequence	36067..36504	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHTZ010000009.1	140203..141071	99.195	870	0						
GCA_033013815.1_PDT001952572.1_genomic.fna	Salmonella_enterica	0.5228	103.612 KB	16	aroC_2,dnaN_4,hemD_40,hisD_43,purE_481,sucA_2,thrA_425	2125	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_4	hemD	100	100	hemD_40	hisD	100	100	hisD_43	purE	100	100	purE_481	sucA	100	100	sucA_2	thrA	100	100	thrA_425	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOHUE010000027.1 Salmonella enterica strain PS02479A SAMN37939869-rid19944693.denovo.27, whole genome shotgun sequence	12505..12942	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOHUE010000089.1 Salmonella enterica strain PS02479A SAMN37939869-rid19944693.guided.70, whole genome shotgun sequence	480..917	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHUE010000003.1	141992..142861	99.77	870	0						
GCA_033013855.1_PDT001952573.1_genomic.fna	Salmonella_enterica	0.5222	364.788 KB	4	aroC_13,dnaN_109,hemD_49,hisD_13,purE_12,sucA_13,thrA_4	512	30:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	30	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Urbana		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHUD010000001.1 Salmonella enterica strain PS02473A SAMN37939868-rid19944703.denovo.01, whole genome shotgun sequence	268658..269095	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHUD010000041.1 Salmonella enterica strain PS02473A SAMN37939868-rid19944703.guided.35, whole genome shotgun sequence	116..553	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHUD010000004.1	95265..96134	99.425	870	0						
GCA_033014615.1_PDT001764869.1_genomic.fna	Salmonella_enterica	0.5216	707.806 KB	2	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHUL010000001.1 Salmonella enterica strain PNUSAS352582 SAMN35529575-rid18244833.denovo.01, whole genome shotgun sequence	624559..624996	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHUL010000022.1 Salmonella enterica strain PNUSAS352582 SAMN35529575-rid18244833.guided.14, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033014655.1_PDT001764868.1_genomic.fna	Salmonella_enterica	0.5202	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHUM010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322295 SAMN35529628-rid18243943.denovo.01, whole genome shotgun sequence	404284..404721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHUM010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322295 SAMN35529628-rid18243943.guided.37, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOHUM010000029.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322295 SAMN35529628-rid18243943.denovo.29, whole genome shotgun sequence	23028..23587	enterobacteriales	IncX1	98.66	374 / 374	ABOHUM010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322295 SAMN35529628-rid18243943.denovo.28, whole genome shotgun sequence	6956..7329																																																avrA	ABOHUM010000003.1	95321..96190	99.655	870	0						
GCA_033014675.1_PDT001764864.1_genomic.fna	Salmonella_enterica	0.5217	552.698 KB	4	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col(IMGS31)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHUP010000001.1 Salmonella enterica strain PNUSAS352570 SAMN35529578-rid18244793.denovo.01, whole genome shotgun sequence	481589..482026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOHUP010000036.1 Salmonella enterica strain PNUSAS352570 SAMN35529578-rid18244793.guided.18, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(IMGS31)	100	198 / 198	ABOHUP010000023.1 Salmonella enterica strain PNUSAS352570 SAMN35529578-rid18244793.denovo.26, whole genome shotgun sequence	1565..1762																																																						avrA	ABOHUP010000002.1	554059..554928	99.77	870	0						
GCA_033014695.1_PDT001764867.1_genomic.fna	Salmonella_enterica	0.5195	219.647 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHUN010000001.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322292 SAMN35529623-rid18244823.denovo.01, whole genome shotgun sequence	486107..486544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHUN010000045.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322292 SAMN35529623-rid18244823.guided.31, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOHUN010000011.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322292 SAMN35529623-rid18244823.denovo.11, whole genome shotgun sequence	17991..18413	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOHUN010000048.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322292 SAMN35529623-rid18244823.guided.36, whole genome shotgun sequence	6440..6862	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHUN010000002.1	180587..181456	99.195	870	0						
GCA_033014715.1_PDT001764866.1_genomic.fna	Salmonella_enterica	0.5205	184.688 KB	9	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHUO010000002.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322290 SAMN35529626-rid18244813.denovo.02, whole genome shotgun sequence	280485..280922	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOHUO010000048.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322290 SAMN35529626-rid18244813.denovo.51, whole genome shotgun sequence	6190..6992	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOHUO010000048.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322290 SAMN35529626-rid18244813.denovo.51, whole genome shotgun sequence	6190..6993	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOHUO010000048.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322290 SAMN35529626-rid18244813.denovo.51, whole genome shotgun sequence	6190..6993	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOHUO010000048.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322290 SAMN35529626-rid18244813.denovo.51, whole genome shotgun sequence	6190..6993	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOHUO010000048.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322290 SAMN35529626-rid18244813.denovo.51, whole genome shotgun sequence	5450..6190	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOHUO010000048.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322290 SAMN35529626-rid18244813.denovo.51, whole genome shotgun sequence	5450..6190	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABOHUO010000074.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322290 SAMN35529626-rid18244813.guided.42, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOHUO010000076.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322290 SAMN35529626-rid18244813.guided.53, whole genome shotgun sequence	1076..1878	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOHUO010000076.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322290 SAMN35529626-rid18244813.guided.53, whole genome shotgun sequence	1075..1878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOHUO010000076.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322290 SAMN35529626-rid18244813.guided.53, whole genome shotgun sequence	1075..1878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOHUO010000076.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322290 SAMN35529626-rid18244813.guided.53, whole genome shotgun sequence	1075..1878	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOHUO010000076.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322290 SAMN35529626-rid18244813.guided.53, whole genome shotgun sequence	1878..2618	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOHUO010000076.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322290 SAMN35529626-rid18244813.guided.53, whole genome shotgun sequence	1878..2618	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOHUO010000041.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322290 SAMN35529626-rid18244813.denovo.44, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABOHUO010000036.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12322290 SAMN35529626-rid18244813.denovo.36, whole genome shotgun sequence	5065..5561																																																avrA	ABOHUO010000012.1	123472..124341	98.966	870	0						
GCA_033014725.1_PDT001764863.1_genomic.fna	Salmonella_enterica	0.5207	385.574 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_167,sucA_15,thrA_4	3624	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_167	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHUQ010000001.1 Salmonella enterica strain PNUSAS352575 SAMN35529572-rid18243933.denovo.01, whole genome shotgun sequence	414568..415005	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHUQ010000029.1 Salmonella enterica strain PNUSAS352575 SAMN35529572-rid18243933.guided.21, whole genome shotgun sequence	3078..3515	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	96.89	193 / 193	ABOHUQ010000022.1 Salmonella enterica strain PNUSAS352575 SAMN35529572-rid18243933.denovo.25, whole genome shotgun sequence	203..395																																																																	
GCA_033014755.1_PDT001764862.1_genomic.fna	Salmonella_enterica	0.5221	496.398 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),ColpVC	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHUR010000001.1 Salmonella enterica strain PNUSAS352578 SAMN35529614-rid18244783.denovo.01, whole genome shotgun sequence	790269..790706	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHUR010000028.1 Salmonella enterica strain PNUSAS352578 SAMN35529614-rid18244783.guided.15, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOHUR010000018.1 Salmonella enterica strain PNUSAS352578 SAMN35529614-rid18244783.denovo.21, whole genome shotgun sequence	1861..1991	enterobacteriales	ColpVC	97.41	193 / 193	ABOHUR010000019.1 Salmonella enterica strain PNUSAS352578 SAMN35529614-rid18244783.denovo.22, whole genome shotgun sequence	280..472																																																avrA	ABOHUR010000002.1	187768..188637	98.966	870	0						
GCA_033014775.1_PDT001764861.1_genomic.fna	Salmonella_enterica	0.5208	349.279 KB	5	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHUS010000001.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12322291 SAMN35529627-rid18243923.denovo.01, whole genome shotgun sequence	502152..502589	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHUS010000031.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12322291 SAMN35529627-rid18243923.guided.25, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033014815.1_PDT001764859.1_genomic.fna	Salmonella_enterica	0.5207	288.245 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pHCM2),IncI1-I(Alpha),IncM1	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHUV010000001.1 Salmonella enterica strain PNUSAS352572 SAMN35529581-rid18244763.denovo.01, whole genome shotgun sequence	274979..275416	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHUV010000050.1 Salmonella enterica strain PNUSAS352572 SAMN35529581-rid18244763.guided.32, whole genome shotgun sequence	926..1363	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	98.63	875 / 875	ABOHUV010000016.1 Salmonella enterica strain PNUSAS352572 SAMN35529581-rid18244763.denovo.16, whole genome shotgun sequence	12149..13023	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOHUV010000028.1 Salmonella enterica strain PNUSAS352572 SAMN35529581-rid18244763.denovo.29, whole genome shotgun sequence	9345..9486		enterobacteriales	IncM1	97.71	742 / 739	ABOHUV010000023.1 Salmonella enterica strain PNUSAS352572 SAMN35529581-rid18244763.denovo.23, whole genome shotgun sequence	12654..13392																																									avrA	ABOHUV010000002.1	210364..211233	98.966	870	0						
GCA_033014825.1_PDT001764857.1_genomic.fna	Salmonella_enterica	0.5214	405.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHUY010000001.1 Salmonella enterica strain PNUSAS352574 SAMN35529611-rid18244753.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHUY010000031.1 Salmonella enterica strain PNUSAS352574 SAMN35529611-rid18244753.guided.15, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.76	643 / 643	ABOHUY010000019.1 Salmonella enterica strain PNUSAS352574 SAMN35529611-rid18244753.denovo.22, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOHUY010000016.1 Salmonella enterica strain PNUSAS352574 SAMN35529611-rid18244753.denovo.17, whole genome shotgun sequence	37108..37369																																																avrA	ABOHUY010000002.1	553499..554368	99.54	870	0						
GCA_033014855.1_PDT001764860.1_genomic.fna	Salmonella_enterica	0.5209	208.763 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHUT010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322293 SAMN35529624-rid18244773.denovo.01, whole genome shotgun sequence	358434..358871	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHUT010000063.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322293 SAMN35529624-rid18244773.guided.33, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOHUT010000021.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322293 SAMN35529624-rid18244773.denovo.21, whole genome shotgun sequence	14161..15306	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOHUT010000064.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322293 SAMN35529624-rid18244773.guided.36, whole genome shotgun sequence	13901..15046	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOHUT010000047.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322293 SAMN35529624-rid18244773.denovo.52, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOHUT010000067.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322293 SAMN35529624-rid18244773.guided.51, whole genome shotgun sequence	3336..4151	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOHUT010000023.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322293 SAMN35529624-rid18244773.denovo.23, whole genome shotgun sequence	951..2150	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOHUT010000068.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322293 SAMN35529624-rid18244773.guided.57, whole genome shotgun sequence	992..2191	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABOHUT010000044.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322293 SAMN35529624-rid18244773.denovo.48, whole genome shotgun sequence	1326..1445	enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOHUT010000048.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322293 SAMN35529624-rid18244773.denovo.53, whole genome shotgun sequence	371..501		enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOHUT010000049.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322293 SAMN35529624-rid18244773.denovo.54, whole genome shotgun sequence	3134..3264		enterobacteriales	IncC	100	417 / 417	ABOHUT010000023.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322293 SAMN35529624-rid18244773.denovo.23, whole genome shotgun sequence	43740..44156																																		avrA	ABOHUT010000015.1	102350..103219	99.885	870	0						
GCA_033014875.1_PDT001764858.1_genomic.fna	Salmonella_enterica	0.5197	204.144 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHUU010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322294 SAMN35529625-rid18243913.denovo.01, whole genome shotgun sequence	575258..575695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHUU010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322294 SAMN35529625-rid18243913.guided.39, whole genome shotgun sequence	13720..14157	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOHUU010000014.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322294 SAMN35529625-rid18243913.denovo.14, whole genome shotgun sequence	77542..78101	enterobacteriales	IncX1	98.66	374 / 374	ABOHUU010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322294 SAMN35529625-rid18243913.denovo.28, whole genome shotgun sequence	6956..7329																																																avrA	ABOHUU010000002.1	149828..150697	99.655	870	0						
GCA_033014895.1_PDT001764856.1_genomic.fna	Salmonella_enterica	0.5205	297.387 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHUX010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322287 SAMN35529617-rid18244743.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHUX010000034.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322287 SAMN35529617-rid18244743.guided.18, whole genome shotgun sequence	24944..25381	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHUX010000022.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322287 SAMN35529617-rid18244743.denovo.24, whole genome shotgun sequence	5993..6635	enterobacteriales	IncFII(S)	100	262 / 262	ABOHUX010000025.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322287 SAMN35529617-rid18244743.denovo.28, whole genome shotgun sequence	3381..3642		enterobacteriales	IncX1	98.93	374 / 374	ABOHUX010000018.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322287 SAMN35529617-rid18244743.denovo.19, whole genome shotgun sequence	32011..32384																																									avrA	ABOHUX010000007.1	175109..175978	99.54	870	0						
GCA_033014915.1_PDT001764850.1_genomic.fna	Salmonella_enterica	0.5212	153.932 KB	9	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHVA010000004.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12322282 SAMN35529570-rid18244703.denovo.04, whole genome shotgun sequence	141101..141538	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHVA010000057.1 Salmonella enterica subsp. enterica serovar Mbandaka strain FSIS12322282 SAMN35529570-rid18244703.guided.42, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHVA010000001.1	534484..535353	99.195	870	0						
GCA_033014935.1_PDT001764851.1_genomic.fna	Salmonella_enterica	0.5208	216.998 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHUZ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOHUZ010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.denovo.35, whole genome shotgun sequence	12848..13639	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHUZ010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.denovo.35, whole genome shotgun sequence	12848..13639	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOHUZ010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.denovo.41, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOHUZ010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.denovo.41, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABOHUZ010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.guided.38, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHUZ010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.guided.38, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOHUZ010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.guided.39, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOHUZ010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.guided.40, whole genome shotgun sequence	8768..9793	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOHUZ010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.guided.40, whole genome shotgun sequence	10022..10798	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOHUZ010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.denovo.41, whole genome shotgun sequence	8678..9891	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOHUZ010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.guided.40, whole genome shotgun sequence	956..2169	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOHUZ010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.denovo.35, whole genome shotgun sequence	11504..12343	Sulfamethoxazole	U12338	sul1	100	840/840	ABOHUZ010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.guided.38, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOHUZ010000016.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.denovo.16, whole genome shotgun sequence	928..2127	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOHUZ010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.guided.32, whole genome shotgun sequence	959..2158	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOHUZ010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.denovo.44, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOHUZ010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.guided.46, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOHUZ010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.denovo.27, whole genome shotgun sequence	32791..33350	enterobacteriales	IncX1	98.93	374 / 374	ABOHUZ010000029.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322286 SAMN35529615-rid18243893.denovo.30, whole genome shotgun sequence	30449..30822																																																avrA	ABOHUZ010000003.1	93817..94686	99.655	870	0						
GCA_033014955.1_PDT001952592.1_genomic.fna	Salmonella_enterica	0.5221	613.536 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHVB010000001.1 Salmonella enterica strain PNUSAS394784 SAMN37942587-rid19944893.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOHVB010000018.1 Salmonella enterica strain PNUSAS394784 SAMN37942587-rid19944893.guided.12, whole genome shotgun sequence	22479..22916	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHVB010000002.1	562129..562999	99.656	871	0						
GCA_033014975.1_PDT001952588.1_genomic.fna	Salmonella_enterica	0.5202	402.028 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHVC010000001.1 Salmonella enterica strain PNUSAS394796 SAMN37942576-rid19944853.denovo.01, whole genome shotgun sequence	643809..644246	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHVC010000025.1 Salmonella enterica strain PNUSAS394796 SAMN37942576-rid19944853.guided.15, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033015035.1_PDT001764855.1_genomic.fna	Salmonella_enterica	0.5223	762.483 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHVF010000001.1 Salmonella enterica strain PNUSAS351772 SAMN35529482-rid18244733.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOHVF010000016.1 Salmonella enterica strain PNUSAS351772 SAMN35529482-rid18244733.guided.12, whole genome shotgun sequence	20662..21099	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHVF010000004.1	553510..554379	99.655	870	0						
GCA_033015055.1_PDT001764849.1_genomic.fna	Salmonella_enterica	0.5216	357.567 KB	4	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHVG010000001.1 Salmonella enterica strain PNUSAS352580 SAMN35529616-rid18244693.denovo.01, whole genome shotgun sequence	933550..933987	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHVG010000029.1 Salmonella enterica strain PNUSAS352580 SAMN35529616-rid18244693.guided.19, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_033015095.1_PDT001764847.1_genomic.fna	Salmonella_enterica	0.5218	152.104 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	-	- 7:r:1,5	This antigenic profile has been associated with serotype 'Infantis' in the Kauffman-White scheme. The existence of the same antigenic formula in multiple species or subspecies is well documented in the Kauffman-White Scheme. The input genome cannot be identified as Salmonella. Check the input for taxonomic ID, contamination, or sequencing quality.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHVI010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOHVI010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.denovo.58, whole genome shotgun sequence	7849..8640	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHVI010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.denovo.58, whole genome shotgun sequence	7849..8640	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOHVI010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.denovo.66, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOHVI010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.denovo.66, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOHVI010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.guided.35, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOHVI010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.guided.63, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHVI010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.guided.63, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOHVI010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.guided.65, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOHVI010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.guided.65, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOHVI010000058.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.denovo.61, whole genome shotgun sequence	1591..2804	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOHVI010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.guided.62, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOHVI010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.denovo.58, whole genome shotgun sequence	6505..7344	Sulfamethoxazole	U12338	sul1	100	840/840	ABOHVI010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.guided.63, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOHVI010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.denovo.52, whole genome shotgun sequence	854..2053	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOHVI010000083.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.guided.70, whole genome shotgun sequence	884..2083	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOHVI010000047.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322289 SAMN35529610-rid18244683.denovo.49, whole genome shotgun sequence	9109..9668																																																						avrA	ABOHVI010000028.1	39430..40299	99.655	870	0						
GCA_033015115.1_PDT001764846.1_genomic.fna	Salmonella_enterica	0.519	168.252 KB	9	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHVK010000013.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322285 SAMN35529613-rid18244673.denovo.13, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHVK010000044.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322285 SAMN35529613-rid18244673.denovo.47, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOHVK010000044.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322285 SAMN35529613-rid18244673.denovo.47, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOHVK010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322285 SAMN35529613-rid18244673.guided.34, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHVK010000082.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322285 SAMN35529613-rid18244673.guided.53, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOHVK010000082.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322285 SAMN35529613-rid18244673.guided.53, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOHVK010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322285 SAMN35529613-rid18244673.denovo.55, whole genome shotgun sequence	2337..3542	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOHVK010000083.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322285 SAMN35529613-rid18244673.guided.57, whole genome shotgun sequence	2406..3611	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOHVK010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322285 SAMN35529613-rid18244673.denovo.58, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABOHVK010000044.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322285 SAMN35529613-rid18244673.denovo.47, whole genome shotgun sequence	5800..6061		enterobacteriales	IncFII	96.95	262 / 261	ABOHVK010000082.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322285 SAMN35529613-rid18244673.guided.53, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOHVK010000042.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322285 SAMN35529613-rid18244673.denovo.45, whole genome shotgun sequence	3740..3881		enterobacteriales	IncX1	100	373 / 373	ABOHVK010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322285 SAMN35529613-rid18244673.denovo.50, whole genome shotgun sequence	2732..3104																											avrA	ABOHVK010000028.1	39484..40353	99.655	870	0						
GCA_033015135.1_PDT001764845.1_genomic.fna	Salmonella_enterica	0.5221	732.017 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOHVL010000003.1 Salmonella enterica strain PNUSAS352579 SAMN35529612-rid18244663.denovo.03, whole genome shotgun sequence	644881..645318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOHVL010000015.1 Salmonella enterica strain PNUSAS352579 SAMN35529612-rid18244663.guided.10, whole genome shotgun sequence	34812..35249	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHVL010000002.1	561586..562454	99.655	870	0						
GCA_033015155.1_PDT001764844.1_genomic.fna	Salmonella_enterica	0.5211	380.381 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHVM010000001.1 Salmonella enterica strain PNUSAS352581 SAMN35529618-rid18244653.denovo.01, whole genome shotgun sequence	559058..559495	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHVM010000042.1 Salmonella enterica strain PNUSAS352581 SAMN35529618-rid18244653.guided.26, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHVM010000009.1	140203..141071	99.195	870	0						
GCA_033015195.1_PDT001764842.1_genomic.fna	Salmonella_enterica	0.5231	513.61 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOHVO010000001.1 Salmonella enterica strain PNUSAS351776 SAMN35529532-rid18244643.denovo.01, whole genome shotgun sequence	667526..667963	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOHVO010000030.1 Salmonella enterica strain PNUSAS351776 SAMN35529532-rid18244643.guided.21, whole genome shotgun sequence	8104..8541	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHVO010000003.1	508581..509450	99.31	870	0						
GCA_033015255.1_PDT001764837.1_genomic.fna	Salmonella_enterica	0.5211	406.325 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHVQ010000001.1 Salmonella enterica strain PNUSAS352568 SAMN35529582-rid18244603.denovo.01, whole genome shotgun sequence	815016..815453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHVQ010000030.1 Salmonella enterica strain PNUSAS352568 SAMN35529582-rid18244603.guided.16, whole genome shotgun sequence	21776..22213	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHVQ010000017.1 Salmonella enterica strain PNUSAS352568 SAMN35529582-rid18244603.denovo.19, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABOHVQ010000014.1 Salmonella enterica strain PNUSAS352568 SAMN35529582-rid18244603.denovo.15, whole genome shotgun sequence	4395..4656																																																avrA	ABOHVQ010000002.1	552927..553796	99.54	870	0						
GCA_033015275.1_PDT001764838.1_genomic.fna	Salmonella_enterica	0.5214	150.712 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHVP010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322277 SAMN35529555-rid18243863.denovo.01, whole genome shotgun sequence	180624..181061	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOHVP010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322277 SAMN35529555-rid18243863.denovo.52, whole genome shotgun sequence	7669..8460	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHVP010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322277 SAMN35529555-rid18243863.denovo.52, whole genome shotgun sequence	7669..8460	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOHVP010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322277 SAMN35529555-rid18243863.denovo.56, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOHVP010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322277 SAMN35529555-rid18243863.denovo.56, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOHVP010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322277 SAMN35529555-rid18243863.guided.47, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOHVP010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322277 SAMN35529555-rid18243863.guided.53, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHVP010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322277 SAMN35529555-rid18243863.guided.53, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOHVP010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322277 SAMN35529555-rid18243863.guided.55, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOHVP010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322277 SAMN35529555-rid18243863.guided.55, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABOHVP010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322277 SAMN35529555-rid18243863.denovo.52, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	sul1	100	840/840	ABOHVP010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322277 SAMN35529555-rid18243863.guided.53, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOHVP010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322277 SAMN35529555-rid18243863.denovo.43, whole genome shotgun sequence	910..2109	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOHVP010000073.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322277 SAMN35529555-rid18243863.guided.59, whole genome shotgun sequence	941..2140	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOHVP010000040.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322277 SAMN35529555-rid18243863.denovo.41, whole genome shotgun sequence	9109..9668																																																						avrA	ABOHVP010000007.1	39430..40299	99.655	870	0						
GCA_033015295.1_PDT001764836.1_genomic.fna	Salmonella_enterica	0.5217	277.732 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHVR010000001.1 Salmonella enterica strain PNUSAS351778 SAMN35529485-rid18244593.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHVR010000048.1 Salmonella enterica strain PNUSAS351778 SAMN35529485-rid18244593.guided.28, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOHVR010000027.1 Salmonella enterica strain PNUSAS351778 SAMN35529485-rid18244593.denovo.27, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABOHVR010000027.1 Salmonella enterica strain PNUSAS351778 SAMN35529485-rid18244593.denovo.27, whole genome shotgun sequence	9325..9586																																																avrA	ABOHVR010000006.1	94133..95002	99.885	870	0						
GCA_033015335.1_PDT001764834.1_genomic.fna	Salmonella_enterica	0.5209	454.935 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHVT010000001.1 Salmonella enterica strain PNUSAS352576 SAMN35529580-rid18244573.denovo.01, whole genome shotgun sequence	398462..398899	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHVT010000032.1 Salmonella enterica strain PNUSAS352576 SAMN35529580-rid18244573.guided.20, whole genome shotgun sequence	10647..11084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHVT010000002.1	496411..497279	99.425	870	0						
GCA_033015355.1_PDT001764832.1_genomic.fna	Salmonella_enterica	0.522	257.839 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHVW010000002.1 Salmonella enterica strain PNUSAS352170 SAMN35529547-rid18244563.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHVW010000047.1 Salmonella enterica strain PNUSAS352170 SAMN35529547-rid18244563.guided.36, whole genome shotgun sequence	2518..2955	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABOHVW010000035.1 Salmonella enterica strain PNUSAS352170 SAMN35529547-rid18244563.denovo.38, whole genome shotgun sequence	4021..4151	enterobacteriales	IncFIB(S)	100	643 / 643	ABOHVW010000022.1 Salmonella enterica strain PNUSAS352170 SAMN35529547-rid18244563.denovo.22, whole genome shotgun sequence	44709..45351		enterobacteriales	IncFII(S)	100	262 / 262	ABOHVW010000022.1 Salmonella enterica strain PNUSAS352170 SAMN35529547-rid18244563.denovo.22, whole genome shotgun sequence	29363..29624																																									avrA	ABOHVW010000004.1	175018..175886	100	869	0						
GCA_033015435.1_PDT001764828.1_genomic.fna	Salmonella_enterica	0.5214	299.252 KB	6	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHVZ010000001.1 Salmonella enterica strain PNUSAS352577 SAMN35529577-rid18243843.denovo.01, whole genome shotgun sequence	316666..317103	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHVZ010000036.1 Salmonella enterica strain PNUSAS352577 SAMN35529577-rid18243843.guided.25, whole genome shotgun sequence	10032..10469	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_033015455.1_PDT001764825.1_genomic.fna	Salmonella_enterica	0.5214	367.101 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHWC010000003.1 Salmonella enterica strain PNUSAS352569 SAMN35529574-rid18244503.denovo.03, whole genome shotgun sequence	147546..147983	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHWC010000038.1 Salmonella enterica strain PNUSAS352569 SAMN35529574-rid18244503.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHWC010000011.1	175905..176773	99.195	870	0						
GCA_033015475.1_PDT001764827.1_genomic.fna	Salmonella_enterica	0.5226	266.714 KB	7	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I,Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHWA010000001.1 Salmonella enterica strain PNUSAS352159 SAMN35529538-rid18244523.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHWA010000046.1 Salmonella enterica strain PNUSAS352159 SAMN35529538-rid18244523.guided.31, whole genome shotgun sequence	4322..4759	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOHWA010000032.1 Salmonella enterica strain PNUSAS352159 SAMN35529538-rid18244523.denovo.35, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	94.59	111 / 114	ABOHWA010000031.1 Salmonella enterica strain PNUSAS352159 SAMN35529538-rid18244523.denovo.34, whole genome shotgun sequence	3175..3285		enterobacteriales	Col440I	93.81	113 / 114	ABOHWA010000033.1 Salmonella enterica strain PNUSAS352159 SAMN35529538-rid18244523.denovo.36, whole genome shotgun sequence	2528..2639																																									avrA	ABOHWA010000006.1	94166..95034	99.425	870	0						
GCA_033015495.1_PDT001764826.1_genomic.fna	Salmonella_enterica	0.5214	312.827 KB	4	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHWB010000001.1 Salmonella enterica strain PNUSAS352573 SAMN35529579-rid18244513.denovo.01, whole genome shotgun sequence	933569..934006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHWB010000028.1 Salmonella enterica strain PNUSAS352573 SAMN35529579-rid18244513.guided.17, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_033015535.1_PDT001764823.1_genomic.fna	Salmonella_enterica	0.5201	180.794 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHWD010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321781 SAMN35529550-rid18243833.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOHWD010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321781 SAMN35529550-rid18243833.denovo.45, whole genome shotgun sequence	11872..12663	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHWD010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321781 SAMN35529550-rid18243833.denovo.45, whole genome shotgun sequence	11872..12663	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOHWD010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321781 SAMN35529550-rid18243833.guided.38, whole genome shotgun sequence	18735..19172	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOHWD010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321781 SAMN35529550-rid18243833.guided.51, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHWD010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321781 SAMN35529550-rid18243833.guided.51, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOHWD010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321781 SAMN35529550-rid18243833.denovo.45, whole genome shotgun sequence	10528..11367	Sulfamethoxazole	U12338	sul1	100	840/840	ABOHWD010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321781 SAMN35529550-rid18243833.guided.51, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOHWD010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321781 SAMN35529550-rid18243833.denovo.41, whole genome shotgun sequence	1869..3068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOHWD010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321781 SAMN35529550-rid18243833.guided.42, whole genome shotgun sequence	992..2191	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOHWD010000028.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321781 SAMN35529550-rid18243833.denovo.29, whole genome shotgun sequence	32791..33350	enterobacteriales	IncX1	98.93	374 / 374	ABOHWD010000029.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12321781 SAMN35529550-rid18243833.denovo.30, whole genome shotgun sequence	7449..7822																																																avrA	ABOHWD010000002.1	39430..40299	99.655	870	0						
GCA_033015555.1_PDT001764822.1_genomic.fna	Salmonella_enterica	0.5212	478.474 KB	3	aroC_5,dnaN_2,hemD_360,hisD_7,purE_6,sucA_6,thrA_11	1973	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_360	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHWE010000001.1 Salmonella enterica strain PNUSAS352571 SAMN35529576-rid18244483.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHWE010000030.1 Salmonella enterica strain PNUSAS352571 SAMN35529576-rid18244483.guided.14, whole genome shotgun sequence	24944..25381	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHWE010000017.1 Salmonella enterica strain PNUSAS352571 SAMN35529576-rid18244483.denovo.20, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABOHWE010000019.1 Salmonella enterica strain PNUSAS352571 SAMN35529576-rid18244483.denovo.22, whole genome shotgun sequence	3404..3665																																																avrA	ABOHWE010000002.1	553362..554231	99.54	870	0						
GCA_033015575.1_PDT001764808.1_genomic.fna	Salmonella_enterica	0.5205	402.455 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHWI010000001.1 Salmonella enterica strain PNUSAS352499 SAMN35529221-rid18243793.denovo.01, whole genome shotgun sequence	642724..643161	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHWI010000017.1 Salmonella enterica strain PNUSAS352499 SAMN35529221-rid18243793.guided.13, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033015595.1_PDT001764810.1_genomic.fna	Salmonella_enterica	0.5223	245.582 KB	6	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHWH010000001.1 Salmonella enterica subsp. enterica serovar London strain FSIS12322281 SAMN35529558-rid18244393.denovo.01, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHWH010000033.1 Salmonella enterica subsp. enterica serovar London strain FSIS12322281 SAMN35529558-rid18244393.guided.27, whole genome shotgun sequence	25020..25457	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHWH010000011.1	36961..37830	99.425	870	0						
GCA_033015615.1_PDT001764821.1_genomic.fna	Salmonella_enterica	0.5208	314.032 KB	5	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHWF010000001.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12322284 SAMN35529573-rid18244473.denovo.01, whole genome shotgun sequence	501835..502272	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHWF010000029.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS12322284 SAMN35529573-rid18244473.guided.21, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033015635.1_PDT001764802.1_genomic.fna	Salmonella_enterica	0.5232	517.393 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncB/O/K/Z	aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOHWJ010000001.1 Salmonella enterica strain PNUSAS352498 SAMN35529197-rid18244353.denovo.01, whole genome shotgun sequence	666962..667399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOHWJ010000025.1 Salmonella enterica strain PNUSAS352498 SAMN35529197-rid18244353.guided.20, whole genome shotgun sequence	3330..3767	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncB/O/K/Z	96.69	151 / 151	ABOHWJ010000012.1 Salmonella enterica strain PNUSAS352498 SAMN35529197-rid18244353.denovo.12, whole genome shotgun sequence	39093..39243																																																						avrA	ABOHWJ010000003.1	557247..558116	99.31	870	0						
GCA_033015675.1_PDT001764820.1_genomic.fna	Salmonella_enterica	0.5132	216.607 KB	7	aroC_65,dnaN_25,hemD_29,hisD_24,purE_20,sucA_50,thrA_497	2131	41:z4,z23:-	1	blaTEM-1B,blaTEM-1B	1	parC_p.T57S	1	IncM2,IncM2	aroC	100	100	aroC_65	dnaN	100	100	dnaN_25	hemD	100	100	hemD_29	hisD	100	100	hisD_24	purE	100	100	purE_20	sucA	100	100	sucA_50	thrA	100	100	thrA_497	41	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 41:z4,z23:-		O	H1_fliC	H2_fljB	blaTEM-1B	100	861/861	ABOHWK010000024.1 Salmonella enterica strain PNUSAS352160 SAMN35529535-rid18244463.denovo.24, whole genome shotgun sequence	25753..26613	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOHWK010000065.1 Salmonella enterica strain PNUSAS352160 SAMN35529535-rid18244463.guided.36, whole genome shotgun sequence	6913..7773	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncM2	100	664 / 664	ABOHWK010000024.1 Salmonella enterica strain PNUSAS352160 SAMN35529535-rid18244463.denovo.24, whole genome shotgun sequence	28604..29267	enterobacteriales	IncM2	100	664 / 664	ABOHWK010000065.1 Salmonella enterica strain PNUSAS352160 SAMN35529535-rid18244463.guided.36, whole genome shotgun sequence	9764..10427																																																											
GCA_033015715.1_PDT001764817.1_genomic.fna	Salmonella_enterica	0.5215	324.186 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHWM010000006.1 Salmonella enterica strain PNUSAS352167 SAMN35529479-rid18244443.denovo.06, whole genome shotgun sequence	178557..178994	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHWM010000058.1 Salmonella enterica strain PNUSAS352167 SAMN35529479-rid18244443.guided.38, whole genome shotgun sequence	1098..1535	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOHWM010000026.1 Salmonella enterica strain PNUSAS352167 SAMN35529479-rid18244443.denovo.26, whole genome shotgun sequence	6836..7478	enterobacteriales	IncFII(S)	100	262 / 262	ABOHWM010000026.1 Salmonella enterica strain PNUSAS352167 SAMN35529479-rid18244443.denovo.26, whole genome shotgun sequence	22563..22824																																																avrA	ABOHWM010000001.1	450730..451599	99.885	870	0						
GCA_033015735.1_PDT001764816.1_genomic.fna	Salmonella_enterica	0.5212	430.206 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHWN010000006.1 Salmonella enterica strain PNUSAS352501 SAMN35529218-rid18243813.denovo.06, whole genome shotgun sequence	78682..79119	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHWN010000021.1 Salmonella enterica strain PNUSAS352501 SAMN35529218-rid18243813.guided.16, whole genome shotgun sequence	711..1148	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHWN010000009.1	150691..151561	99.196	871	0						
GCA_033015755.1_PDT001764814.1_genomic.fna	Salmonella_enterica	0.5211	479.111 KB	4	aroC_11,dnaN_10,hemD_13,hisD_13,purE_10,sucA_13,thrA_4	20	4:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHWP010000002.1 Salmonella enterica strain 1154659001 SAMN35529167-rid18244423.denovo.02, whole genome shotgun sequence	624908..625345	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHWP010000027.1 Salmonella enterica strain 1154659001 SAMN35529167-rid18244423.guided.23, whole genome shotgun sequence	2018..2455	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABOHWP010000004.1 Salmonella enterica strain 1154659001 SAMN35529167-rid18244423.denovo.04, whole genome shotgun sequence	155082..155504	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABOHWP010000025.1 Salmonella enterica strain 1154659001 SAMN35529167-rid18244423.guided.18, whole genome shotgun sequence	37133..37555	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033015795.1_PDT001764811.1_genomic.fna	Salmonella_enterica	0.5212	477.349 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHWR010000001.1 Salmonella enterica strain PNUSAS352165 SAMN35529541-rid18244403.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHWR010000023.1 Salmonella enterica strain PNUSAS352165 SAMN35529541-rid18244403.guided.16, whole genome shotgun sequence	13530..13967	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHWR010000002.1	553187..554056	99.54	870	0						
GCA_033015815.1_PDT001764813.1_genomic.fna	Salmonella_enterica	0.5214	193.17 KB	9	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHWQ010000020.1 Salmonella enterica strain PNUSAS352500 SAMN35529215-rid18243803.denovo.20, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHWQ010000068.1 Salmonella enterica strain PNUSAS352500 SAMN35529215-rid18243803.guided.40, whole genome shotgun sequence	3334..3771	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHWQ010000001.1	54770..55638	99.31	870	0						
GCA_033015835.1_PDT001764812.1_genomic.fna	Salmonella_enterica	0.5211	230.378 KB	9	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_58,thrA_4	239	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_4	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHWS010000001.1 Salmonella enterica strain PNUSAS352488 SAMN35529203-rid18244413.denovo.001, whole genome shotgun sequence	187639..188076	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHWS010000158.1 Salmonella enterica strain PNUSAS352488 SAMN35529203-rid18244413.guided.053, whole genome shotgun sequence	2389..2826	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOHWS010000037.1 Salmonella enterica strain PNUSAS352488 SAMN35529203-rid18244413.denovo.037, whole genome shotgun sequence	11448..12090	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABOHWS010000031.1 Salmonella enterica strain PNUSAS352488 SAMN35529203-rid18244413.denovo.031, whole genome shotgun sequence	20762..21344																																																											
GCA_033015855.1_PDT001764807.1_genomic.fna	Salmonella_enterica	0.5204	246.349 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHWT010000001.1 Salmonella enterica strain PNUSAS352528 SAMN35529460-rid18244373.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHWT010000031.1 Salmonella enterica strain PNUSAS352528 SAMN35529460-rid18244373.guided.20, whole genome shotgun sequence	30267..30704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABOHWT010000021.1 Salmonella enterica strain PNUSAS352528 SAMN35529460-rid18244373.denovo.22, whole genome shotgun sequence	32011..32384																																																						avrA	ABOHWT010000015.1	39434..40303	99.54	870	0						
GCA_033015875.1_PDT001764805.1_genomic.fna	Salmonella_enterica	0.5207	490.103 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHWV010000001.1 Salmonella enterica strain PNUSAS352491 SAMN35529200-rid18244363.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHWV010000021.1 Salmonella enterica strain PNUSAS352491 SAMN35529200-rid18244363.guided.17, whole genome shotgun sequence	1428..1865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHWV010000012.1 Salmonella enterica strain PNUSAS352491 SAMN35529200-rid18244363.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOHWV010000015.1 Salmonella enterica strain PNUSAS352491 SAMN35529200-rid18244363.denovo.16, whole genome shotgun sequence	3404..3665		enterobacteriales	IncX1	98.93	374 / 374	ABOHWV010000014.1 Salmonella enterica strain PNUSAS352491 SAMN35529200-rid18244363.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABOHWV010000002.1	553577..554446	99.54	870	0						
GCA_033015915.1_PDT001764804.1_genomic.fna	Salmonella_enterica	0.5213	696.379 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHWW010000001.1 Salmonella enterica strain PNUSAS352508 SAMN35529212-rid18243773.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHWW010000020.1 Salmonella enterica strain PNUSAS352508 SAMN35529212-rid18243773.guided.14, whole genome shotgun sequence	4165..4602	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033015935.1_PDT001764803.1_genomic.fna	Salmonella_enterica	0.523	470.494 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHWX010000001.1 Salmonella enterica strain PNUSAS352492 SAMN35529205-rid18243763.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHWX010000029.1 Salmonella enterica strain PNUSAS352492 SAMN35529205-rid18243763.guided.20, whole genome shotgun sequence	9962..10399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOHWX010000030.1 Salmonella enterica strain PNUSAS352492 SAMN35529205-rid18243763.guided.21, whole genome shotgun sequence	9962..10399	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHWX010000003.1	94085..94954	99.655	870	0						
GCA_033015955.1_PDT001764801.1_genomic.fna	Salmonella_enterica	0.5217	343.495 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHWZ010000001.1 Salmonella enterica strain PNUSAS352162 SAMN35529544-rid18244343.denovo.01, whole genome shotgun sequence	454798..455235	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHWZ010000048.1 Salmonella enterica strain PNUSAS352162 SAMN35529544-rid18244343.guided.27, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOHWZ010000022.1 Salmonella enterica strain PNUSAS352162 SAMN35529544-rid18244343.denovo.22, whole genome shotgun sequence	5365..6570	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOHWZ010000049.1 Salmonella enterica strain PNUSAS352162 SAMN35529544-rid18244343.guided.29, whole genome shotgun sequence	1725..2930	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOHWZ010000033.1 Salmonella enterica strain PNUSAS352162 SAMN35529544-rid18244343.denovo.37, whole genome shotgun sequence	547..675	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOHWZ010000022.1 Salmonella enterica strain PNUSAS352162 SAMN35529544-rid18244343.denovo.22, whole genome shotgun sequence	12956..13097																																																avrA	ABOHWZ010000007.1	147045..147914	98.966	870	0						
GCA_033015995.1_PDT001764797.1_genomic.fna	Salmonella_enterica	0.5218	226.02 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHXB010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322279 SAMN35529559-rid18244313.denovo.01, whole genome shotgun sequence	389879..390316	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHXB010000041.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322279 SAMN35529559-rid18244313.guided.34, whole genome shotgun sequence	4051..4488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOHXB010000022.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12322279 SAMN35529559-rid18244313.denovo.22, whole genome shotgun sequence	16490..16631																																																																	
GCA_033016015.1_PDT001764798.1_genomic.fna	Salmonella_enterica	0.5206	188.226 KB	9	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOHXA010000006.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322283 SAMN35529571-rid18243753.denovo.06, whole genome shotgun sequence	49850..50287	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHXA010000037.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322283 SAMN35529571-rid18243753.denovo.41, whole genome shotgun sequence	5947..6783	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABOHXA010000037.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322283 SAMN35529571-rid18243753.denovo.41, whole genome shotgun sequence	4916..5729	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aph(3'')-Ib	100	804/804	ABOHXA010000037.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322283 SAMN35529571-rid18243753.denovo.41, whole genome shotgun sequence	6783..7586	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABOHXA010000051.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322283 SAMN35529571-rid18243753.guided.36, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHXA010000053.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322283 SAMN35529571-rid18243753.guided.40, whole genome shotgun sequence	7939..8775	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABOHXA010000053.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322283 SAMN35529571-rid18243753.guided.40, whole genome shotgun sequence	8993..9806	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aph(3'')-Ib	100	804/804	ABOHXA010000053.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322283 SAMN35529571-rid18243753.guided.40, whole genome shotgun sequence	7136..7939	Streptomycin	AF321551	sul2	99.88	816/816	ABOHXA010000004.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322283 SAMN35529571-rid18243753.denovo.04, whole genome shotgun sequence	298041..298856	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABOHXA010000052.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322283 SAMN35529571-rid18243753.guided.39, whole genome shotgun sequence	12297..13112	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOHXA010000040.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322283 SAMN35529571-rid18243753.denovo.45, whole genome shotgun sequence	1288..2493	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOHXA010000055.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322283 SAMN35529571-rid18243753.guided.46, whole genome shotgun sequence	4115..5320	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOHXA010000042.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS12322283 SAMN35529571-rid18243753.denovo.48, whole genome shotgun sequence	557..687																																																						avrA	ABOHXA010000011.1	147934..148802	99.655	869	0						
GCA_033016035.1_PDT001764795.1_genomic.fna	Salmonella_enterica	0.5224	88.857 KB	16	aroC_14,dnaN_112,hemD_43,No hit found,purE_118,sucA_115,thrA_120	Unknown	-:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD			No hit found	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOHXD010000013.1 Salmonella enterica subsp. enterica strain FSIS12322278 SAMN35529556-rid18244303.denovo.13, whole genome shotgun sequence	77293..77730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOHXD010000080.1 Salmonella enterica subsp. enterica strain FSIS12322278 SAMN35529556-rid18244303.guided.50, whole genome shotgun sequence	16453..16890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOHXD010000073.1 Salmonella enterica subsp. enterica strain FSIS12322278 SAMN35529556-rid18244303.denovo.76, whole genome shotgun sequence	1703..1833	enterobacteriales	Col440I	91.74	109 / 114	ABOHXD010000071.1 Salmonella enterica subsp. enterica strain FSIS12322278 SAMN35529556-rid18244303.denovo.74, whole genome shotgun sequence	2246..2354		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOHXD010000069.1 Salmonella enterica subsp. enterica strain FSIS12322278 SAMN35529556-rid18244303.denovo.72, whole genome shotgun sequence	257..398																																									avrA	ABOHXD010000021.1	64071..64940	99.425	870	0						
GCA_033016075.1_PDT001764796.1_genomic.fna	Salmonella_enterica	0.5218	274.006 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOHXC010000014.1 Salmonella enterica subsp. enterica serovar Panama strain FSIS12322280 SAMN35529557-rid18243743.denovo.14, whole genome shotgun sequence	70815..71252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOHXC010000033.1 Salmonella enterica subsp. enterica serovar Panama strain FSIS12322280 SAMN35529557-rid18243743.guided.27, whole genome shotgun sequence	14015..14452	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHXC010000004.1	131917..132786	98.966	870	0						
GCA_033016095.1_PDT001764793.1_genomic.fna	Salmonella_enterica	0.5225	202.873 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHXE010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322206 SAMN35529553-rid18243723.denovo.01, whole genome shotgun sequence	180478..180915	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHXE010000048.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322206 SAMN35529553-rid18243723.guided.32, whole genome shotgun sequence	13664..14101	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHXE010000002.1	149923..150792	99.655	870	0						
GCA_033016115.1_PDT001764792.1_genomic.fna	Salmonella_enterica	0.5226	336.631 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I,Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHXF010000001.1 Salmonella enterica strain PNUSAS352161 SAMN35529545-rid18244293.denovo.01, whole genome shotgun sequence	334999..335436	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHXF010000045.1 Salmonella enterica strain PNUSAS352161 SAMN35529545-rid18244293.guided.26, whole genome shotgun sequence	6492..6929	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOHXF010000028.1 Salmonella enterica strain PNUSAS352161 SAMN35529545-rid18244293.denovo.31, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	94.59	111 / 114	ABOHXF010000027.1 Salmonella enterica strain PNUSAS352161 SAMN35529545-rid18244293.denovo.30, whole genome shotgun sequence	3175..3285		enterobacteriales	Col440I	93.81	113 / 114	ABOHXF010000030.1 Salmonella enterica strain PNUSAS352161 SAMN35529545-rid18244293.denovo.33, whole genome shotgun sequence	2528..2639																																									avrA	ABOHXF010000005.1	191619..192487	99.425	870	0						
GCA_033016135.1_PDT001764791.1_genomic.fna	Salmonella_enterica	0.5227	128.312 KB	13	aroC_346,dnaN_4,hemD_8,hisD_125,purE_84,sucA_19,thrA_101	1296	9:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_346	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_19	thrA	100	100	thrA_101	9	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Lome		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOHXG010000001.1 Salmonella enterica strain PNUSAS352174 SAMN35529546-rid18244283.denovo.01, whole genome shotgun sequence	149858..150295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABOHXG010000071.1 Salmonella enterica strain PNUSAS352174 SAMN35529546-rid18244283.guided.67, whole genome shotgun sequence	152..589	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHXG010000005.1	93974..94843	98.966	870	0						
GCA_033016155.1_PDT001764789.1_genomic.fna	Salmonella_enterica	0.5206	490.114 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHXI010000001.1 Salmonella enterica strain PNUSAS352171 SAMN35529548-rid18244263.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHXI010000029.1 Salmonella enterica strain PNUSAS352171 SAMN35529548-rid18244263.guided.22, whole genome shotgun sequence	6174..6611	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHXI010000019.1 Salmonella enterica strain PNUSAS352171 SAMN35529548-rid18244263.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOHXI010000020.1 Salmonella enterica strain PNUSAS352171 SAMN35529548-rid18244263.denovo.23, whole genome shotgun sequence	2225..2486		enterobacteriales	IncX1	98.93	374 / 374	ABOHXI010000015.1 Salmonella enterica strain PNUSAS352171 SAMN35529548-rid18244263.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABOHXI010000002.1	553690..554559	99.54	870	0						
GCA_033016175.1_PDT001764790.1_genomic.fna	Salmonella_enterica	0.5228	222.357 KB	7	aroC_43,dnaN_41,hemD_16,hisD_13,purE_12,sucA_13,thrA_4	195	7:g,m,s:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHXH010000005.1 Salmonella enterica strain PNUSAS352168 SAMN35529549-rid18244273.denovo.05, whole genome shotgun sequence	153895..154332	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHXH010000039.1 Salmonella enterica strain PNUSAS352168 SAMN35529549-rid18244273.guided.33, whole genome shotgun sequence	2162..2599	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOHXH010000018.1 Salmonella enterica strain PNUSAS352168 SAMN35529549-rid18244273.denovo.18, whole genome shotgun sequence	93142..94002	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOHXH010000037.1 Salmonella enterica strain PNUSAS352168 SAMN35529549-rid18244273.guided.29, whole genome shotgun sequence	6350..7210	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033016195.1_PDT001764788.1_genomic.fna	Salmonella_enterica	0.5213	387.416 KB	6	aroC_46,dnaN_60,hemD_10,hisD_9,purE_6,sucA_12,thrA_17	1628	4:e,h:1,5	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	0		1	p0111	aroC	100	100	aroC_46	dnaN	100	100	dnaN_60	hemD	100	100	hemD_10	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Reading		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHXJ010000002.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12322203 SAMN35529534-rid18243713.denovo.02, whole genome shotgun sequence	218739..219176	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHXJ010000040.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12322203 SAMN35529534-rid18243713.guided.21, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	fosA7	99.76	423/423	ABOHXJ010000003.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12322203 SAMN35529534-rid18243713.denovo.03, whole genome shotgun sequence	402614..403036	Fosfomycin	LAPJ01000014	fosA7	99.76	423/423	ABOHXJ010000043.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12322203 SAMN35529534-rid18243713.guided.34, whole genome shotgun sequence	6823..7245	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	p0111	98.08	885 / 885	ABOHXJ010000016.1 Salmonella enterica subsp. enterica serovar Reading strain FSIS12322203 SAMN35529534-rid18243713.denovo.16, whole genome shotgun sequence	28298..29182																																																																	
GCA_033016215.1_PDT001764787.1_genomic.fna	Salmonella_enterica	0.5211	284.16 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHXK010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322204 SAMN35529536-rid18244253.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHXK010000033.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322204 SAMN35529536-rid18244253.guided.21, whole genome shotgun sequence	4035..4472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHXK010000022.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322204 SAMN35529536-rid18244253.denovo.24, whole genome shotgun sequence	6169..6811	enterobacteriales	IncFII(S)	100	262 / 262	ABOHXK010000023.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322204 SAMN35529536-rid18244253.denovo.26, whole genome shotgun sequence	3383..3644																																																avrA	ABOHXK010000007.1	174919..175788	99.54	870	0						
GCA_033016235.1_PDT001764785.1_genomic.fna	Salmonella_enterica	0.5208	180.068 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		2	Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHXM010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322205 SAMN35529539-rid18244243.denovo.01, whole genome shotgun sequence	358433..358870	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHXM010000064.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322205 SAMN35529539-rid18244243.guided.32, whole genome shotgun sequence	8612..9049	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOHXM010000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322205 SAMN35529539-rid18244243.denovo.22, whole genome shotgun sequence	14120..15265	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOHXM010000066.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322205 SAMN35529539-rid18244243.guided.39, whole genome shotgun sequence	10809..11954	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOHXM010000049.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322205 SAMN35529539-rid18244243.denovo.53, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOHXM010000067.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322205 SAMN35529539-rid18244243.guided.52, whole genome shotgun sequence	3336..4151	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOHXM010000054.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322205 SAMN35529539-rid18244243.denovo.59, whole genome shotgun sequence	1674..2873	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOHXM010000068.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322205 SAMN35529539-rid18244243.guided.58, whole genome shotgun sequence	864..2063	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOHXM010000052.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322205 SAMN35529539-rid18244243.denovo.56, whole genome shotgun sequence	371..501	enterobacteriales	IncC	100	417 / 417	ABOHXM010000028.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12322205 SAMN35529539-rid18244243.denovo.28, whole genome shotgun sequence	39895..40311																																																avrA	ABOHXM010000015.1	117336..118205	99.885	870	0						
GCA_033016255.1_PDT001764786.1_genomic.fna	Salmonella_enterica	0.5225	269.483 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHXL010000001.1 Salmonella enterica strain PNUSAS352163 SAMN35529540-rid18243703.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHXL010000037.1 Salmonella enterica strain PNUSAS352163 SAMN35529540-rid18243703.guided.29, whole genome shotgun sequence	623..1060	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHXL010000002.1	149828..150697	99.655	870	0						
GCA_033016275.1_PDT001764784.1_genomic.fna	Salmonella_enterica	0.5223	349.796 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I,Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHXN010000001.1 Salmonella enterica strain PNUSAS352169 SAMN35529543-rid18243693.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHXN010000037.1 Salmonella enterica strain PNUSAS352169 SAMN35529543-rid18243693.guided.23, whole genome shotgun sequence	1285..1722	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOHXN010000024.1 Salmonella enterica strain PNUSAS352169 SAMN35529543-rid18243693.denovo.27, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	94.59	111 / 114	ABOHXN010000023.1 Salmonella enterica strain PNUSAS352169 SAMN35529543-rid18243693.denovo.26, whole genome shotgun sequence	3175..3285		enterobacteriales	Col440I	93.81	113 / 114	ABOHXN010000026.1 Salmonella enterica strain PNUSAS352169 SAMN35529543-rid18243693.denovo.29, whole genome shotgun sequence	2528..2639																																									avrA	ABOHXN010000005.1	191619..192487	99.425	870	0						
GCA_033016295.1_PDT001764782.1_genomic.fna	Salmonella_enterica	0.5213	301.696 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,floR,floR,sul2,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHXR010000004.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHXR010000029.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.denovo.31, whole genome shotgun sequence	5465..6301	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHXR010000029.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.denovo.31, whole genome shotgun sequence	4662..5465	Streptomycin	AF321551	aac(6')-Iaa	99.77	438/438	ABOHXR010000048.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.guided.18, whole genome shotgun sequence	18167..18604	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHXR010000051.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.guided.36, whole genome shotgun sequence	3964..4800	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHXR010000051.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.guided.36, whole genome shotgun sequence	3161..3964	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOHXR010000052.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.guided.37, whole genome shotgun sequence	3964..4800	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHXR010000052.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.guided.37, whole genome shotgun sequence	3161..3964	Streptomycin	AF321551	floR	98.19	1214/1215	ABOHXR010000029.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.denovo.31, whole genome shotgun sequence	9437..10650	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOHXR010000053.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.guided.39, whole genome shotgun sequence	1766..2979	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOHXR010000029.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.denovo.31, whole genome shotgun sequence	3786..4601	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABOHXR010000051.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.guided.36, whole genome shotgun sequence	2285..3100	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOHXR010000052.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.guided.37, whole genome shotgun sequence	2285..3100	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOHXR010000029.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.denovo.31, whole genome shotgun sequence	7562..8836	Doxycycline, Tetracycline	AF534183	tet(A)	100	1172/1200	ABOHXR010000054.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.guided.42, whole genome shotgun sequence	20..1191	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																			enterobacteriales	IncC	100	417 / 417	ABOHXR010000025.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.denovo.26, whole genome shotgun sequence	17855..18271	enterobacteriales	IncFIB(S)	100	643 / 643	ABOHXR010000016.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.denovo.16, whole genome shotgun sequence	86317..86959		enterobacteriales	IncFII(S)	100	262 / 262	ABOHXR010000016.1 Salmonella enterica strain PNUSAS351777 SAMN35529533-rid18244233.denovo.16, whole genome shotgun sequence	70971..71232																																									avrA	ABOHXR010000001.1	447512..448380	100	869	0						
GCA_033016315.1_PDT001764783.1_genomic.fna	Salmonella_enterica	0.5221	335.442 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHXO010000001.1 Salmonella enterica strain PNUSAS352173 SAMN35529542-rid18243683.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHXO010000040.1 Salmonella enterica strain PNUSAS352173 SAMN35529542-rid18243683.guided.24, whole genome shotgun sequence	2514..2951	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.91	132 / 131	ABOHXO010000025.1 Salmonella enterica strain PNUSAS352173 SAMN35529542-rid18243683.denovo.27, whole genome shotgun sequence	2697..2827	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOHXO010000026.1 Salmonella enterica strain PNUSAS352173 SAMN35529542-rid18243683.denovo.28, whole genome shotgun sequence	1506..1636		enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOHXO010000029.1 Salmonella enterica strain PNUSAS352173 SAMN35529542-rid18243683.denovo.32, whole genome shotgun sequence	547..675																																									avrA	ABOHXO010000006.1	147020..147889	98.966	870	0						
GCA_033016335.1_PDT001764781.1_genomic.fna	Salmonella_enterica	0.5214	490.421 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_102,sucA_23,thrA_4	2330	9:a:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_102	sucA	100	100	sucA_23	thrA	100	100	thrA_4	9	a	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Durban		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOHXP010000001.1 Salmonella enterica strain PNUSAS352166 SAMN35529537-rid18244223.denovo.01, whole genome shotgun sequence	839508..839945	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOHXP010000031.1 Salmonella enterica strain PNUSAS352166 SAMN35529537-rid18244223.guided.24, whole genome shotgun sequence	3975..4412	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.44	534 / 534	ABOHXP010000018.1 Salmonella enterica strain PNUSAS352166 SAMN35529537-rid18244223.denovo.18, whole genome shotgun sequence	15582..16115																																																						avrA	ABOHXP010000004.1	128216..129086	99.426	871	0						
GCA_033016355.1_PDT001764780.1_genomic.fna	Salmonella_enterica	0.5225	397.626 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHXQ010000001.1 Salmonella enterica strain PNUSAS351770 SAMN35529483-rid18244213.denovo.01, whole genome shotgun sequence	568394..568831	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHXQ010000042.1 Salmonella enterica strain PNUSAS351770 SAMN35529483-rid18244213.guided.25, whole genome shotgun sequence	3794..4231	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOHXQ010000021.1 Salmonella enterica strain PNUSAS351770 SAMN35529483-rid18244213.denovo.22, whole genome shotgun sequence	512..642																																																						avrA	ABOHXQ010000002.1	127885..128754	98.966	870	0						
GCA_033016375.1_PDT001764779.1_genomic.fna	Salmonella_enterica	0.521	696.549 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHXS010000001.1 Salmonella enterica strain PNUSAS351773 SAMN35529486-rid18244203.denovo.01, whole genome shotgun sequence	482121..482558	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHXS010000023.1 Salmonella enterica strain PNUSAS351773 SAMN35529486-rid18244203.guided.19, whole genome shotgun sequence	5121..5558	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033016395.1_PDT001764778.1_genomic.fna	Salmonella_enterica	0.5213	490.184 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHXT010000001.1 Salmonella enterica strain PNUSAS352164 SAMN35529477-rid18243673.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHXT010000026.1 Salmonella enterica strain PNUSAS352164 SAMN35529477-rid18243673.guided.14, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHXT010000017.1 Salmonella enterica strain PNUSAS352164 SAMN35529477-rid18243673.denovo.18, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABOHXT010000018.1 Salmonella enterica strain PNUSAS352164 SAMN35529477-rid18243673.denovo.21, whole genome shotgun sequence	3402..3663																																																avrA	ABOHXT010000002.1	553187..554056	99.54	870	0						
GCA_033016415.1_PDT001764777.1_genomic.fna	Salmonella_enterica	0.5225	443.923 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHXU010000002.1 Salmonella enterica strain PNUSAS351775 SAMN35529487-rid18244193.denovo.02, whole genome shotgun sequence	52685..53122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHXU010000031.1 Salmonella enterica strain PNUSAS351775 SAMN35529487-rid18244193.guided.17, whole genome shotgun sequence	12388..12825	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOHXU010000020.1 Salmonella enterica strain PNUSAS351775 SAMN35529487-rid18244193.denovo.23, whole genome shotgun sequence	1506..1636																																																						avrA	ABOHXU010000003.1	39350..40219	98.966	870	0						
GCA_033016435.1_PDT001764776.1_genomic.fna	Salmonella_enterica	0.5219	432.733 KB	3	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHXV010000001.1 Salmonella enterica strain PNUSAS351771 SAMN35529481-rid18243663.denovo.01, whole genome shotgun sequence	1079985..1080422	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHXV010000022.1 Salmonella enterica strain PNUSAS351771 SAMN35529481-rid18243663.guided.18, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHXV010000004.1	179099..179969	99.426	871	0						
GCA_033016455.1_PDT001764775.1_genomic.fna	Salmonella_enterica	0.5218	649.99 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHXW010000001.1 Salmonella enterica strain PNUSAS351774 SAMN35529484-rid18244183.denovo.01, whole genome shotgun sequence	422369..422806	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHXW010000025.1 Salmonella enterica strain PNUSAS351774 SAMN35529484-rid18244183.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHXW010000003.1	498620..499488	99.425	870	0						
GCA_033016475.1_PDT001764774.1_genomic.fna	Salmonella_enterica	0.5211	490.177 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHXX010000001.1 Salmonella enterica strain PNUSAS352158 SAMN35529480-rid18243653.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHXX010000019.1 Salmonella enterica strain PNUSAS352158 SAMN35529480-rid18243653.guided.12, whole genome shotgun sequence	39..476	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHXX010000013.1 Salmonella enterica strain PNUSAS352158 SAMN35529480-rid18243653.denovo.14, whole genome shotgun sequence	6798..7440	enterobacteriales	IncFII(S)	100	262 / 262	ABOHXX010000014.1 Salmonella enterica strain PNUSAS352158 SAMN35529480-rid18243653.denovo.16, whole genome shotgun sequence	3385..3646																																																avrA	ABOHXX010000002.1	553499..554368	99.54	870	0						
GCA_033016495.1_PDT001764773.1_genomic.fna	Salmonella_enterica	0.5219	416.285 KB	3	aroC_50,dnaN_63,hemD_25,hisD_72,purE_59,sucA_71,thrA_63	174	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_63	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_59	sucA	100	100	sucA_71	thrA	100	100	thrA_63	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHXY010000001.1 Salmonella enterica strain PNUSAS352172 SAMN35529478-rid18243643.denovo.01, whole genome shotgun sequence	648061..648498	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHXY010000022.1 Salmonella enterica strain PNUSAS352172 SAMN35529478-rid18243643.guided.14, whole genome shotgun sequence	41351..41788	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033016535.1_PDT001764771.1_genomic.fna	Salmonella_enterica	0.5198	257.52 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHYA010000001.1 Salmonella enterica strain PNUSAS352529 SAMN35529459-rid18243633.denovo.01, whole genome shotgun sequence	291347..291784	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHYA010000035.1 Salmonella enterica strain PNUSAS352529 SAMN35529459-rid18243633.guided.19, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHYA010000024.1 Salmonella enterica strain PNUSAS352529 SAMN35529459-rid18243633.denovo.26, whole genome shotgun sequence	6838..7480	enterobacteriales	IncFII(S)	100	262 / 262	ABOHYA010000025.1 Salmonella enterica strain PNUSAS352529 SAMN35529459-rid18243633.denovo.28, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.67	377 / 377	ABOHYA010000019.1 Salmonella enterica strain PNUSAS352529 SAMN35529459-rid18243633.denovo.20, whole genome shotgun sequence	6390..6766																																									avrA	ABOHYA010000011.1	39351..40220	99.54	870	0						
GCA_033016575.1_PDT001764766.1_genomic.fna	Salmonella_enterica	0.5211	477.349 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHYE010000001.1 Salmonella enterica strain PNUSAS352530 SAMN35529461-rid18243613.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHYE010000034.1 Salmonella enterica strain PNUSAS352530 SAMN35529461-rid18243613.guided.21, whole genome shotgun sequence	5130..5567	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.88	538 / 643	ABOHYE010000018.1 Salmonella enterica strain PNUSAS352530 SAMN35529461-rid18243613.denovo.20, whole genome shotgun sequence	9516..10053	enterobacteriales	IncFII(S)	100	262 / 262	ABOHYE010000019.1 Salmonella enterica strain PNUSAS352530 SAMN35529461-rid18243613.denovo.22, whole genome shotgun sequence	3392..3653																																																avrA	ABOHYE010000002.1	552670..553539	99.54	870	0						
GCA_033016675.1_PDT001952514.1_genomic.fna	Salmonella_enterica	0.5222	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHYH010000001.1 Salmonella enterica strain PNUSAS394402 SAMN37937559-rid19944293.denovo.01, whole genome shotgun sequence	832533..832970	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOHYH010000024.1 Salmonella enterica strain PNUSAS394402 SAMN37937559-rid19944293.guided.13, whole genome shotgun sequence	26399..26836	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHYH010000002.1	95040..95909	98.851	870	0						
GCA_033017095.1_PDT001764730.1_genomic.fna	Salmonella_enterica	0.5221	592.232 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHZH010000001.1 Salmonella enterica strain PNUSAS352495 SAMN35529202-rid18243443.denovo.01, whole genome shotgun sequence	421980..422417	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHZH010000031.1 Salmonella enterica strain PNUSAS352495 SAMN35529202-rid18243443.guided.25, whole genome shotgun sequence	249..686	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABOHZH010000013.1 Salmonella enterica strain PNUSAS352495 SAMN35529202-rid18243443.denovo.13, whole genome shotgun sequence	51927..52188																																																						avrA	ABOHZH010000003.1	497146..498014	99.425	870	0						
GCA_033017115.1_PDT001764729.1_genomic.fna	Salmonella_enterica	0.5214	278.344 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOHZI010000001.1 Salmonella enterica strain PNUSAS352509 SAMN35529214-rid18243433.denovo.01, whole genome shotgun sequence	482767..483204	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOHZI010000035.1 Salmonella enterica strain PNUSAS352509 SAMN35529214-rid18243433.denovo.38, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOHZI010000035.1 Salmonella enterica strain PNUSAS352509 SAMN35529214-rid18243433.denovo.38, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOHZI010000044.1 Salmonella enterica strain PNUSAS352509 SAMN35529214-rid18243433.guided.34, whole genome shotgun sequence	6255..6692	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	804/804	ABOHZI010000046.1 Salmonella enterica strain PNUSAS352509 SAMN35529214-rid18243433.guided.40, whole genome shotgun sequence	1185..1988	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOHZI010000048.1 Salmonella enterica strain PNUSAS352509 SAMN35529214-rid18243433.guided.43, whole genome shotgun sequence	787..1623	Streptomycin	M28829	aph(3'')-Ib	100	787/804	ABOHZI010000048.1 Salmonella enterica strain PNUSAS352509 SAMN35529214-rid18243433.guided.43, whole genome shotgun sequence	1..787	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOHZI010000036.1 Salmonella enterica strain PNUSAS352509 SAMN35529214-rid18243433.denovo.42, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOHZI010000047.1 Salmonella enterica strain PNUSAS352509 SAMN35529214-rid18243433.guided.41, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOHZI010000035.1 Salmonella enterica strain PNUSAS352509 SAMN35529214-rid18243433.denovo.38, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOHZI010000046.1 Salmonella enterica strain PNUSAS352509 SAMN35529214-rid18243433.guided.40, whole genome shotgun sequence	309..1124	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOHZI010000029.1 Salmonella enterica strain PNUSAS352509 SAMN35529214-rid18243433.denovo.29, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOHZI010000043.1 Salmonella enterica strain PNUSAS352509 SAMN35529214-rid18243433.guided.31, whole genome shotgun sequence	7311..8516	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																												avrA	ABOHZI010000002.1	434643..435512	99.885	870	0						
GCA_033017135.1_PDT001764726.1_genomic.fna	Salmonella_enterica	0.5198	550.89 KB	2	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncI2(Delta),IncX4	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOHZL010000001.1 Salmonella enterica strain PNUSAS352503 SAMN35529213-rid18243403.denovo.01, whole genome shotgun sequence	1339522..1339959	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOHZL010000019.1 Salmonella enterica strain PNUSAS352503 SAMN35529213-rid18243403.guided.16, whole genome shotgun sequence	3911..4348	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABOHZL010000012.1 Salmonella enterica strain PNUSAS352503 SAMN35529213-rid18243403.denovo.12, whole genome shotgun sequence	30419..30740	enterobacteriales	IncX4	100	374 / 374	ABOHZL010000015.1 Salmonella enterica strain PNUSAS352503 SAMN35529213-rid18243403.denovo.15, whole genome shotgun sequence	7852..8225																																																avrA	ABOHZL010000002.1	149708..150577	99.425	870	0						
GCA_033017155.1_PDT001764724.1_genomic.fna	Salmonella_enterica	0.5217	671.569 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOHZN010000001.1 Salmonella enterica strain PNUSAS352504 SAMN35529216-rid18243383.denovo.01, whole genome shotgun sequence	408804..409241	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOHZN010000023.1 Salmonella enterica strain PNUSAS352504 SAMN35529216-rid18243383.guided.16, whole genome shotgun sequence	15018..15455	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHZN010000003.1	497008..497876	99.425	870	0						
GCA_033017175.1_PDT001764725.1_genomic.fna	Salmonella_enterica	0.5213	293.689 KB	6	aroC_140,dnaN_105,hemD_8,hisD_93,purE_2,sucA_10,thrA_58	1993	35:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_8	hisD	100	100	hisD_93	purE	100	100	purE_2	sucA	100	100	sucA_10	thrA	100	100	thrA_58	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHZM010000002.1 Salmonella enterica strain PNUSAS352506 SAMN35529217-rid18243393.denovo.02, whole genome shotgun sequence	486688..487125	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHZM010000048.1 Salmonella enterica strain PNUSAS352506 SAMN35529217-rid18243393.guided.25, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033017215.1_PDT001764733.1_genomic.fna	Salmonella_enterica	0.522	341.383 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOHZE010000003.1 Salmonella enterica strain PNUSAS352502 SAMN35529220-rid18243473.denovo.03, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOHZE010000040.1 Salmonella enterica strain PNUSAS352502 SAMN35529220-rid18243473.guided.28, whole genome shotgun sequence	3288..3725	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOHZE010000016.1 Salmonella enterica strain PNUSAS352502 SAMN35529220-rid18243473.denovo.16, whole genome shotgun sequence	14681..15323	enterobacteriales	IncFII(S)	100	262 / 262	ABOHZE010000016.1 Salmonella enterica strain PNUSAS352502 SAMN35529220-rid18243473.denovo.16, whole genome shotgun sequence	30408..30669																																																avrA	ABOHZE010000004.1	209589..210457	100	869	0						
GCA_033017255.1_PDT001764731.1_genomic.fna	Salmonella_enterica	0.5209	403.608 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHZG010000010.1 Salmonella enterica strain PNUSAS352468 SAMN35529207-rid18243453.denovo.10, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHZG010000036.1 Salmonella enterica strain PNUSAS352468 SAMN35529207-rid18243453.guided.28, whole genome shotgun sequence	6865..7302	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOHZG010000017.1 Salmonella enterica strain PNUSAS352468 SAMN35529207-rid18243453.denovo.17, whole genome shotgun sequence	34957..35490																																																						avrA	ABOHZG010000002.1	209205..210071	98.966	870	0						
GCA_033017295.1_PDT001764727.1_genomic.fna	Salmonella_enterica	0.5212	239.997 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHZK010000002.1 Salmonella enterica strain PNUSAS352507 SAMN35529219-rid18243413.denovo.02, whole genome shotgun sequence	103049..103486	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOHZK010000015.1 Salmonella enterica strain PNUSAS352507 SAMN35529219-rid18243413.denovo.15, whole genome shotgun sequence	74777..75568	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHZK010000015.1 Salmonella enterica strain PNUSAS352507 SAMN35529219-rid18243413.denovo.15, whole genome shotgun sequence	74777..75568	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOHZK010000049.1 Salmonella enterica strain PNUSAS352507 SAMN35529219-rid18243413.guided.33, whole genome shotgun sequence	18325..18762	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOHZK010000051.1 Salmonella enterica strain PNUSAS352507 SAMN35529219-rid18243413.guided.37, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOHZK010000051.1 Salmonella enterica strain PNUSAS352507 SAMN35529219-rid18243413.guided.37, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOHZK010000015.1 Salmonella enterica strain PNUSAS352507 SAMN35529219-rid18243413.denovo.15, whole genome shotgun sequence	76073..76912	Sulfamethoxazole	U12338	sul1	100	840/840	ABOHZK010000051.1 Salmonella enterica strain PNUSAS352507 SAMN35529219-rid18243413.guided.37, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOHZK010000015.1 Salmonella enterica strain PNUSAS352507 SAMN35529219-rid18243413.denovo.15, whole genome shotgun sequence	89429..90628	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOHZK010000051.1 Salmonella enterica strain PNUSAS352507 SAMN35529219-rid18243413.guided.37, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOHZK010000035.1 Salmonella enterica strain PNUSAS352507 SAMN35529219-rid18243413.denovo.39, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX1	94.92	374 / 374	ABOHZK010000030.1 Salmonella enterica strain PNUSAS352507 SAMN35529219-rid18243413.denovo.30, whole genome shotgun sequence	5488..5861																																																avrA	ABOHZK010000005.1	150439..151308	99.655	870	0						
GCA_033017305.1_PDT001764723.1_genomic.fna	Salmonella_enterica	0.5227	444.776 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOHZO010000001.1 Salmonella enterica strain PNUSAS352497 SAMN35529199-rid18243373.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOHZO010000026.1 Salmonella enterica strain PNUSAS352497 SAMN35529199-rid18243373.guided.20, whole genome shotgun sequence	6159..6596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHZO010000006.1	39430..40299	99.655	870	0						
GCA_033017335.1_PDT001764728.1_genomic.fna	Salmonella_enterica	0.5192	227.482 KB	6	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHZJ010000003.1 Salmonella enterica strain PNUSAS352489 SAMN35529204-rid18243423.denovo.03, whole genome shotgun sequence	370303..370740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHZJ010000043.1 Salmonella enterica strain PNUSAS352489 SAMN35529204-rid18243423.guided.30, whole genome shotgun sequence	3326..3763	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033017355.1_PDT001764722.1_genomic.fna	Salmonella_enterica	0.5217	375.1 KB	5	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOHZP010000002.1 Salmonella enterica strain PNUSAS352505 SAMN35529211-rid18243363.denovo.02, whole genome shotgun sequence	150117..150554	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOHZP010000030.1 Salmonella enterica strain PNUSAS352505 SAMN35529211-rid18243363.guided.26, whole genome shotgun sequence	1432..1869	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOHZP010000001.1	554429..555297	99.195	870	0						
GCA_033017375.1_PDT001764721.1_genomic.fna	Salmonella_enterica	0.5214	406.303 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHZQ010000001.1 Salmonella enterica strain PNUSAS352490 SAMN35529201-rid18243353.denovo.01, whole genome shotgun sequence	414738..415175	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHZQ010000026.1 Salmonella enterica strain PNUSAS352490 SAMN35529201-rid18243353.guided.17, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033017415.1_PDT001764720.1_genomic.fna	Salmonella_enterica	0.52	465.914 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOHZR010000001.1 Salmonella enterica strain PNUSAS352493 SAMN35529206-rid18243343.denovo.01, whole genome shotgun sequence	605391..605828	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOHZR010000033.1 Salmonella enterica strain PNUSAS352493 SAMN35529206-rid18243343.guided.23, whole genome shotgun sequence	1824..2261	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOHZR010000009.1	169424..170292	99.195	870	0						
GCA_033017455.1_PDT001764716.1_genomic.fna	Salmonella_enterica	0.5195	378.998 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHZV010000001.1 Salmonella enterica strain 1154735001 SAMN35529195-rid18243303.denovo.01, whole genome shotgun sequence	170653..171090	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHZV010000034.1 Salmonella enterica strain 1154735001 SAMN35529195-rid18243303.guided.21, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABOHZV010000016.1 Salmonella enterica strain 1154735001 SAMN35529195-rid18243303.denovo.16, whole genome shotgun sequence	3364..3625																																																						avrA	ABOHZV010000003.1	341650..342519	99.425	870	0						
GCA_033017475.1_PDT001764717.1_genomic.fna	Salmonella_enterica	0.5212	489.85 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOHZU010000001.1 Salmonella enterica strain PNUSAS352494 SAMN35529196-rid18243313.denovo.01, whole genome shotgun sequence	547674..548111	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOHZU010000026.1 Salmonella enterica strain PNUSAS352494 SAMN35529196-rid18243313.guided.18, whole genome shotgun sequence	10245..10682	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOHZU010000015.1 Salmonella enterica strain PNUSAS352494 SAMN35529196-rid18243313.denovo.15, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABOHZU010000018.1 Salmonella enterica strain PNUSAS352494 SAMN35529196-rid18243313.denovo.20, whole genome shotgun sequence	3446..3707																																																avrA	ABOHZU010000002.1	505310..506179	99.54	870	0						
GCA_033017515.1_PDT001764714.1_genomic.fna	Salmonella_enterica	0.5211	696.432 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOHZY010000001.1 Salmonella enterica strain PNUSAS352496 SAMN35529198-rid18243283.denovo.01, whole genome shotgun sequence	642138..642575	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOHZY010000017.1 Salmonella enterica strain PNUSAS352496 SAMN35529198-rid18243283.guided.13, whole genome shotgun sequence	3337..3774	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033017585.1_PDT001764710.1_genomic.fna	Salmonella_enterica	0.5219	278.356 KB	6	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOIAB010000001.1 Salmonella enterica strain 1155008001 SAMN35529165-rid18243243.denovo.01, whole genome shotgun sequence	177159..177596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOIAB010000045.1 Salmonella enterica strain 1155008001 SAMN35529165-rid18243243.guided.25, whole genome shotgun sequence	7917..8354	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	90.27	113 / 114	ABOIAB010000033.1 Salmonella enterica strain 1155008001 SAMN35529165-rid18243243.denovo.36, whole genome shotgun sequence	3345..3457																																																						avrA	ABOIAB010000008.1	39602..40471	99.77	870	0						
GCA_033017615.1_PDT001764709.1_genomic.fna	Salmonella_enterica	0.5211	272.667 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col156,IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIAC010000001.1 Salmonella enterica strain 1154936001 SAMN35529169-rid18243233.denovo.01, whole genome shotgun sequence	789976..790413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIAC010000050.1 Salmonella enterica strain 1154936001 SAMN35529169-rid18243233.guided.20, whole genome shotgun sequence	24816..25253	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOIAC010000036.1 Salmonella enterica strain 1154936001 SAMN35529169-rid18243233.denovo.39, whole genome shotgun sequence	1506..1636	enterobacteriales	Col156	94.81	154 / 154	ABOIAC010000033.1 Salmonella enterica strain 1154936001 SAMN35529169-rid18243233.denovo.36, whole genome shotgun sequence	4243..4396		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOIAC010000026.1 Salmonella enterica strain 1154936001 SAMN35529169-rid18243233.denovo.28, whole genome shotgun sequence	15843..15984																																									avrA	ABOIAC010000016.1	39350..40219	98.966	870	0						
GCA_033017635.1_PDT001764708.1_genomic.fna	Salmonella_enterica	0.5216	192.994 KB	10	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIAD010000014.1 Salmonella enterica strain 1154912001 SAMN35529166-rid18243223.denovo.14, whole genome shotgun sequence	105258..105695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIAD010000049.1 Salmonella enterica strain 1154912001 SAMN35529166-rid18243223.guided.34, whole genome shotgun sequence	34655..35092	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOIAD010000042.1 Salmonella enterica strain 1154912001 SAMN35529166-rid18243223.denovo.45, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	93.64	110 / 114	ABOIAD010000043.1 Salmonella enterica strain 1154912001 SAMN35529166-rid18243223.denovo.46, whole genome shotgun sequence	1566..1675																																																											
GCA_033017675.1_PDT001764707.1_genomic.fna	Salmonella_enterica	0.5206	213.816 KB	7	aroC_50,dnaN_80,hemD_25,hisD_85,purE_432,sucA_58,thrA_4	1607	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_432	sucA	100	100	sucA_58	thrA	100	100	thrA_4	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIAG010000001.1 Salmonella enterica strain 1155184001 SAMN35529161-rid18243213.denovo.01, whole genome shotgun sequence	654958..655395	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIAG010000048.1 Salmonella enterica strain 1155184001 SAMN35529161-rid18243213.guided.25, whole genome shotgun sequence	11969..12406	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOIAG010000028.1 Salmonella enterica strain 1155184001 SAMN35529161-rid18243213.denovo.30, whole genome shotgun sequence	11446..12088																																																																	
GCA_033017695.1_PDT001764705.1_genomic.fna	Salmonella_enterica	0.5214	406.116 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIAH010000001.1 Salmonella enterica strain 1155253001 SAMN35529163-rid18243193.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIAH010000036.1 Salmonella enterica strain 1155253001 SAMN35529163-rid18243193.guided.23, whole genome shotgun sequence	9276..9713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIAH010000022.1 Salmonella enterica strain 1155253001 SAMN35529163-rid18243193.denovo.24, whole genome shotgun sequence	8459..9101	enterobacteriales	IncFII(S)	100	262 / 262	ABOIAH010000024.1 Salmonella enterica strain 1155253001 SAMN35529163-rid18243193.denovo.27, whole genome shotgun sequence	3415..3676																																																avrA	ABOIAH010000007.1	174773..175642	99.54	870	0						
GCA_033017715.1_PDT001764706.1_genomic.fna	Salmonella_enterica	0.5209	406.794 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIAF010000001.1 Salmonella enterica strain 1155020001 SAMN35529162-rid18243203.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIAF010000028.1 Salmonella enterica strain 1155020001 SAMN35529162-rid18243203.guided.17, whole genome shotgun sequence	8844..9281	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	98.96	193 / 193	ABOIAF010000024.1 Salmonella enterica strain 1155020001 SAMN35529162-rid18243203.denovo.27, whole genome shotgun sequence	805..997	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIAF010000020.1 Salmonella enterica strain 1155020001 SAMN35529162-rid18243203.denovo.22, whole genome shotgun sequence	6820..7462		enterobacteriales	IncFII(S)	100	262 / 262	ABOIAF010000021.1 Salmonella enterica strain 1155020001 SAMN35529162-rid18243203.denovo.24, whole genome shotgun sequence	3413..3674																																									avrA	ABOIAF010000002.1	553180..554049	99.54	870	0						
GCA_033017735.1_PDT001764703.1_genomic.fna	Salmonella_enterica	0.5215	185.828 KB	5	aroC_13,dnaN_109,hemD_49,hisD_13,purE_220,sucA_13,thrA_4	754	30:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_220	sucA	100	100	sucA_13	thrA	100	100	thrA_4	30	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Urbana		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOIAJ010000001.1 Salmonella enterica strain 1155022001 SAMN35529164-rid18243173.denovo.01, whole genome shotgun sequence	145680..146117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOIAJ010000048.1 Salmonella enterica strain 1155022001 SAMN35529164-rid18243173.guided.36, whole genome shotgun sequence	3193..3630	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABOIAJ010000023.1 Salmonella enterica strain 1155022001 SAMN35529164-rid18243173.denovo.23, whole genome shotgun sequence	16741..17383	enterobacteriales	IncFII(p96A)	99.44	534 / 534	ABOIAJ010000022.1 Salmonella enterica strain 1155022001 SAMN35529164-rid18243173.denovo.22, whole genome shotgun sequence	15582..16115																																																avrA	ABOIAJ010000003.1	95198..96067	99.425	870	0						
GCA_033017755.1_PDT001764704.1_genomic.fna	Salmonella_enterica	0.5203	469.992 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIAI010000001.1 Salmonella enterica strain 1154442001 SAMN35529168-rid18243183.denovo.01, whole genome shotgun sequence	777942..778379	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIAI010000026.1 Salmonella enterica strain 1154442001 SAMN35529168-rid18243183.guided.16, whole genome shotgun sequence	20586..21023	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIAI010000019.1 Salmonella enterica strain 1154442001 SAMN35529168-rid18243183.denovo.22, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOIAI010000020.1 Salmonella enterica strain 1154442001 SAMN35529168-rid18243183.denovo.23, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.93	374 / 374	ABOIAI010000015.1 Salmonella enterica strain 1154442001 SAMN35529168-rid18243183.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABOIAI010000007.1	175109..175978	99.54	870	0						
GCA_033017795.1_PDT001764701.1_genomic.fna	Salmonella_enterica	0.5218	208.807 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIAK010000001.1 Salmonella enterica strain PNUSAS352255 SAMN35528962-rid18243153.denovo.01, whole genome shotgun sequence	460174..460611	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOIAK010000027.1 Salmonella enterica strain PNUSAS352255 SAMN35528962-rid18243153.denovo.27, whole genome shotgun sequence	1059..1850	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIAK010000027.1 Salmonella enterica strain PNUSAS352255 SAMN35528962-rid18243153.denovo.27, whole genome shotgun sequence	1059..1850	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOIAK010000049.1 Salmonella enterica strain PNUSAS352255 SAMN35528962-rid18243153.guided.38, whole genome shotgun sequence	6083..6520	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOIAK010000050.1 Salmonella enterica strain PNUSAS352255 SAMN35528962-rid18243153.guided.39, whole genome shotgun sequence	1100..1891	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIAK010000050.1 Salmonella enterica strain PNUSAS352255 SAMN35528962-rid18243153.guided.39, whole genome shotgun sequence	1100..1891	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABOIAK010000038.1 Salmonella enterica strain PNUSAS352255 SAMN35528962-rid18243153.denovo.43, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOIAK010000052.1 Salmonella enterica strain PNUSAS352255 SAMN35528962-rid18243153.guided.45, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABOIAK010000039.1 Salmonella enterica strain PNUSAS352255 SAMN35528962-rid18243153.denovo.44, whole genome shotgun sequence	322..738	Fosfomycin	AB522970	fosA3	100	417/417	ABOIAK010000053.1 Salmonella enterica strain PNUSAS352255 SAMN35528962-rid18243153.guided.46, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABOIAK010000027.1 Salmonella enterica strain PNUSAS352255 SAMN35528962-rid18243153.denovo.27, whole genome shotgun sequence	2355..3194	Sulfamethoxazole	U12338	sul1	100	840/840	ABOIAK010000050.1 Salmonella enterica strain PNUSAS352255 SAMN35528962-rid18243153.guided.39, whole genome shotgun sequence	2396..3235	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOIAK010000027.1 Salmonella enterica strain PNUSAS352255 SAMN35528962-rid18243153.denovo.27, whole genome shotgun sequence	15711..16910	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIAK010000048.1 Salmonella enterica strain PNUSAS352255 SAMN35528962-rid18243153.guided.36, whole genome shotgun sequence	6264..7463	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOIAK010000031.1 Salmonella enterica strain PNUSAS352255 SAMN35528962-rid18243153.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABOIAK010000002.1	94085..94954	99.655	870	0						
GCA_033017815.1_PDT001764698.1_genomic.fna	Salmonella_enterica	0.5209	489.854 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIAM010000001.1 Salmonella enterica strain PNUSAS352248 SAMN35528964-rid18243123.denovo.01, whole genome shotgun sequence	807943..808380	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIAM010000029.1 Salmonella enterica strain PNUSAS352248 SAMN35528964-rid18243123.guided.19, whole genome shotgun sequence	20551..20988	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABOIAM010000015.1 Salmonella enterica strain PNUSAS352248 SAMN35528964-rid18243123.denovo.15, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOIAM010000018.1 Salmonella enterica strain PNUSAS352248 SAMN35528964-rid18243123.denovo.21, whole genome shotgun sequence	3407..3668		enterobacteriales	IncX1	98.66	374 / 374	ABOIAM010000019.1 Salmonella enterica strain PNUSAS352248 SAMN35528964-rid18243123.denovo.22, whole genome shotgun sequence	5341..5714																																									avrA	ABOIAM010000002.1	553169..554038	99.54	870	0						
GCA_033017855.1_PDT001764695.1_genomic.fna	Salmonella_enterica	0.5133	283.068 KB	6	aroC_65,dnaN_451,hemD_29,hisD_82,purE_20,sucA_26,thrA_60	2775	48:g,z51:-	0		1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_65	dnaN	100	100	dnaN_451	hemD	100	100	hemD_29	hisD	100	100	hisD_82	purE	100	100	purE_20	sucA	100	100	sucA_26	thrA	100	100	thrA_60	48	g,z51	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 48:g,z51:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOIAN010000019.1 Salmonella enterica strain PNUSAS352251 SAMN35528963-rid18243093.denovo.19, whole genome shotgun sequence	70065..70206																																																																	
GCA_033017875.1_PDT001764697.1_genomic.fna	Salmonella_enterica	0.5214	334.696 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIAO010000001.1 Salmonella enterica strain PNUSAS352252 SAMN35528960-rid18243113.denovo.01, whole genome shotgun sequence	439834..440271	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIAO010000030.1 Salmonella enterica strain PNUSAS352252 SAMN35528960-rid18243113.guided.22, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIAO010000020.1 Salmonella enterica strain PNUSAS352252 SAMN35528960-rid18243113.denovo.20, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABOIAO010000022.1 Salmonella enterica strain PNUSAS352252 SAMN35528960-rid18243113.denovo.24, whole genome shotgun sequence	3368..3629																																																avrA	ABOIAO010000002.1	553678..554547	99.54	870	0						
GCA_033017895.1_PDT001764693.1_genomic.fna	Salmonella_enterica	0.5214	242.099 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIAP010000002.1 Salmonella enterica strain PNUSAS352250 SAMN35528961-rid18243073.denovo.02, whole genome shotgun sequence	384787..385224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIAP010000047.1 Salmonella enterica strain PNUSAS352250 SAMN35528961-rid18243073.guided.26, whole genome shotgun sequence	3004..3441	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIAP010000001.1	504091..504961	99.196	871	0						
GCA_033017915.1_PDT001764685.1_genomic.fna	Salmonella_enterica	0.5229	390.541 KB	4	aroC_10,dnaN_37,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	698	8:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_37	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Lindenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOIAQ010000001.1 Salmonella enterica strain PNUSAS352249 SAMN35528921-rid18242993.denovo.01, whole genome shotgun sequence	474490..474927	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOIAQ010000029.1 Salmonella enterica strain PNUSAS352249 SAMN35528921-rid18242993.guided.21, whole genome shotgun sequence	8859..9296	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIAQ010000002.1	658754..659623	99.77	870	0						
GCA_033018095.1_PDT001764660.1_genomic.fna	Salmonella_enterica	0.5206	245.652 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIAZ010000001.1 Salmonella enterica strain 23MD05CG01-S SAMN35528338-rid18242743.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOIAZ010000024.1 Salmonella enterica strain 23MD05CG01-S SAMN35528338-rid18242743.denovo.24, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIAZ010000024.1 Salmonella enterica strain 23MD05CG01-S SAMN35528338-rid18242743.denovo.24, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOIAZ010000048.1 Salmonella enterica strain 23MD05CG01-S SAMN35528338-rid18242743.guided.31, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIAZ010000048.1 Salmonella enterica strain 23MD05CG01-S SAMN35528338-rid18242743.guided.31, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOIAZ010000051.1 Salmonella enterica strain 23MD05CG01-S SAMN35528338-rid18242743.guided.43, whole genome shotgun sequence	2027..2464	Amikacin, Tobramycin	NC_003197	blaCTX-M-65	100	876/876	ABOIAZ010000036.1 Salmonella enterica strain 23MD05CG01-S SAMN35528338-rid18242743.denovo.39, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOIAZ010000050.1 Salmonella enterica strain 23MD05CG01-S SAMN35528338-rid18242743.guided.40, whole genome shotgun sequence	940..1815	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABOIAZ010000039.1 Salmonella enterica strain 23MD05CG01-S SAMN35528338-rid18242743.denovo.45, whole genome shotgun sequence	195..611	Fosfomycin	AB522970	fosA3	100	417/417	ABOIAZ010000052.1 Salmonella enterica strain 23MD05CG01-S SAMN35528338-rid18242743.guided.44, whole genome shotgun sequence	236..652	Fosfomycin	AB522970	sul1	100	840/840	ABOIAZ010000024.1 Salmonella enterica strain 23MD05CG01-S SAMN35528338-rid18242743.denovo.24, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOIAZ010000048.1 Salmonella enterica strain 23MD05CG01-S SAMN35528338-rid18242743.guided.31, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOIAZ010000024.1 Salmonella enterica strain 23MD05CG01-S SAMN35528338-rid18242743.denovo.24, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIAZ010000048.1 Salmonella enterica strain 23MD05CG01-S SAMN35528338-rid18242743.guided.31, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOIAZ010000026.1 Salmonella enterica strain 23MD05CG01-S SAMN35528338-rid18242743.denovo.27, whole genome shotgun sequence	25004..25563	enterobacteriales	IncX1	98.93	374 / 374	ABOIAZ010000023.1 Salmonella enterica strain 23MD05CG01-S SAMN35528338-rid18242743.denovo.23, whole genome shotgun sequence	7449..7822																																																avrA	ABOIAZ010000002.1	149828..150697	99.655	870	0						
GCA_033018115.1_PDT001764659.1_genomic.fna	Salmonella_enterica	0.5219	273.851 KB	6	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pRSB107)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOIBA010000012.1 Salmonella enterica strain PNUSAS351923 SAMN35528334-rid18242733.denovo.12, whole genome shotgun sequence	70815..71252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOIBA010000041.1 Salmonella enterica strain PNUSAS351923 SAMN35528334-rid18242733.guided.30, whole genome shotgun sequence	1523..1960	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pRSB107)	96.18	262 / 261	ABOIBA010000020.1 Salmonella enterica strain PNUSAS351923 SAMN35528334-rid18242733.denovo.20, whole genome shotgun sequence	61149..61410																																																						avrA	ABOIBA010000001.1	94228..95097	98.966	870	0						
GCA_033018135.1_PDT001764658.1_genomic.fna	Salmonella_enterica	0.5212	385.386 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIBB010000001.1 Salmonella enterica strain PNUSAS351926 SAMN35528332-rid18242723.denovo.01, whole genome shotgun sequence	414849..415286	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIBB010000025.1 Salmonella enterica strain PNUSAS351926 SAMN35528332-rid18242723.guided.17, whole genome shotgun sequence	15267..15704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_033018155.1_PDT001764657.1_genomic.fna	Salmonella_enterica	0.5216	204.018 KB	7	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOIBC010000001.1 Salmonella enterica strain PNUSAS351924 SAMN35528335-rid18242713.denovo.01, whole genome shotgun sequence	346928..347365	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOIBC010000048.1 Salmonella enterica strain PNUSAS351924 SAMN35528335-rid18242713.guided.30, whole genome shotgun sequence	6014..6451	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIBC010000008.1	39348..40217	99.54	870	0						
GCA_033018195.1_PDT001764655.1_genomic.fna	Salmonella_enterica	0.521	258.366 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIBE010000005.1 Salmonella enterica strain PNUSAS351925 SAMN35528333-rid18242693.denovo.05, whole genome shotgun sequence	140501..140938	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIBE010000051.1 Salmonella enterica strain PNUSAS351925 SAMN35528333-rid18242693.guided.40, whole genome shotgun sequence	792..1229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIBE010000003.1	39428..40297	99.195	870	0						
GCA_033018215.1_PDT001764654.1_genomic.fna	Salmonella_enterica	0.5218	273.224 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIBF010000001.1 Salmonella enterica strain PNUSAS351927 SAMN35528336-rid18242683.denovo.01, whole genome shotgun sequence	413071..413508	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIBF010000053.1 Salmonella enterica strain PNUSAS351927 SAMN35528336-rid18242683.guided.38, whole genome shotgun sequence	1115..1552	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIBF010000054.1 Salmonella enterica strain PNUSAS351927 SAMN35528336-rid18242683.guided.39, whole genome shotgun sequence	1115..1552	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																							enterobacteriales	IncFIB(S)	100	643 / 643	ABOIBF010000016.1 Salmonella enterica strain PNUSAS351927 SAMN35528336-rid18242683.denovo.16, whole genome shotgun sequence	68489..69131	enterobacteriales	IncFII(S)	100	262 / 262	ABOIBF010000016.1 Salmonella enterica strain PNUSAS351927 SAMN35528336-rid18242683.denovo.16, whole genome shotgun sequence	84216..84477																																																avrA	ABOIBF010000007.1	98459..99328	99.885	870	0						
GCA_033018235.1_PDT001764653.1_genomic.fna	Salmonella_enterica	0.51	297.611 KB	8	aroC_29,dnaN_173,hemD_30,hisD_212,purE_21,sucA_145,thrA_132	574	48:i:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_29	dnaN	100	100	dnaN_173	hemD	100	100	hemD_30	hisD	100	100	hisD_212	purE	100	100	purE_21	sucA	100	100	sucA_145	thrA	100	100	thrA_132	48	i	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:i:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIBG010000009.1 Salmonella enterica strain PNUSAS352139 SAMN35528328-rid18242673.denovo.09, whole genome shotgun sequence	95136..95573	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIBG010000076.1 Salmonella enterica strain PNUSAS352139 SAMN35528328-rid18242673.guided.26, whole genome shotgun sequence	53487..53924	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIBG010000010.1	144706..145575	96.667	870	0						
GCA_033018255.1_PDT001764652.1_genomic.fna	Salmonella_enterica	0.5214	406.91 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIBH010000001.1 Salmonella enterica strain PNUSAS352140 SAMN35528327-rid18242663.denovo.01, whole genome shotgun sequence	774530..774967	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIBH010000024.1 Salmonella enterica strain PNUSAS352140 SAMN35528327-rid18242663.guided.15, whole genome shotgun sequence	34243..34680	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIBH010000013.1 Salmonella enterica strain PNUSAS352140 SAMN35528327-rid18242663.denovo.13, whole genome shotgun sequence	40584..41226	enterobacteriales	IncFII(S)	100	262 / 262	ABOIBH010000018.1 Salmonella enterica strain PNUSAS352140 SAMN35528327-rid18242663.denovo.20, whole genome shotgun sequence	3388..3649																																																avrA	ABOIBH010000002.1	553545..554414	99.54	870	0						
GCA_033018315.1_PDT001764649.1_genomic.fna	Salmonella_enterica	0.5209	489.863 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIBJ010000001.1 Salmonella enterica strain PNUSAS352141 SAMN35528326-rid18242633.denovo.01, whole genome shotgun sequence	706580..707017	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIBJ010000024.1 Salmonella enterica strain PNUSAS352141 SAMN35528326-rid18242633.guided.15, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIBJ010000013.1 Salmonella enterica strain PNUSAS352141 SAMN35528326-rid18242633.denovo.14, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABOIBJ010000016.1 Salmonella enterica strain PNUSAS352141 SAMN35528326-rid18242633.denovo.19, whole genome shotgun sequence	3395..3656																																																avrA	ABOIBJ010000002.1	553636..554505	99.54	870	0						
GCA_033018335.1_PDT001764647.1_genomic.fna	Salmonella_enterica	0.5212	400.799 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIBL010000001.1 Salmonella enterica strain PNUSAS352108 SAMN35528096-rid18242613.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIBL010000027.1 Salmonella enterica strain PNUSAS352108 SAMN35528096-rid18242613.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIBL010000018.1 Salmonella enterica strain PNUSAS352108 SAMN35528096-rid18242613.denovo.20, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABOIBL010000015.1 Salmonella enterica strain PNUSAS352108 SAMN35528096-rid18242613.denovo.16, whole genome shotgun sequence	4260..4521																																																avrA	ABOIBL010000008.1	174740..175609	99.54	870	0						
GCA_033018355.1_PDT001764646.1_genomic.fna	Salmonella_enterica	0.5217	437.201 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_603	2783	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_603	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABOIBM010000001.1 Salmonella enterica strain PNUSAS352107 SAMN35528106-rid18242603.denovo.01, whole genome shotgun sequence	145022..145459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABOIBM010000025.1 Salmonella enterica strain PNUSAS352107 SAMN35528106-rid18242603.guided.20, whole genome shotgun sequence	8080..8517	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIBM010000003.1	499341..500210	99.54	870	0						
GCA_033018375.1_PDT001764645.1_genomic.fna	Salmonella_enterica	0.5214	389.399 KB	5	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	2	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-15,blaCTX-M-15	1	parC_p.T57S	3	ColpVC,IncFII(pHN7A8),IncFII(pSFO)	aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIBN010000001.1 Salmonella enterica strain PNUSAS352105 SAMN35528093-rid18242593.denovo.01, whole genome shotgun sequence	37910..38347	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIBN010000043.1 Salmonella enterica strain PNUSAS352105 SAMN35528093-rid18242593.guided.15, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197	blaCTX-M-15	100	876/876	ABOIBN010000020.1 Salmonella enterica strain PNUSAS352105 SAMN35528093-rid18242593.denovo.22, whole genome shotgun sequence	9024..9899	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	ABOIBN010000046.1 Salmonella enterica strain PNUSAS352105 SAMN35528093-rid18242593.guided.25, whole genome shotgun sequence	5672..6547	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	97.41	193 / 193	ABOIBN010000033.1 Salmonella enterica strain PNUSAS352105 SAMN35528093-rid18242593.denovo.37, whole genome shotgun sequence	279..471	enterobacteriales	IncFII(pHN7A8)	98.08	260 / 260	ABOIBN010000020.1 Salmonella enterica strain PNUSAS352105 SAMN35528093-rid18242593.denovo.22, whole genome shotgun sequence	16918..17177		enterobacteriales	IncFII(pSFO)	95.04	262 / 258	ABOIBN010000011.1 Salmonella enterica strain PNUSAS352105 SAMN35528093-rid18242593.denovo.11, whole genome shotgun sequence	109937..110198																																									avrA	ABOIBN010000002.1	512930..513799	98.851	870	0						
GCA_033018395.1_PDT001952585.1_genomic.fna	Salmonella_enterica	0.5216	265.24 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA17,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA17,blaTEM-1B,blaTEM-1B,lnu(F),lnu(F),floR,floR,qnrS1,qnrS1,sul2,sul2,tet(B),tet(B)	0		2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIBO010000003.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.denovo.03, whole genome shotgun sequence	52070..52507	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIBO010000040.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.denovo.45, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIBO010000040.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.denovo.45, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aadA17	98.86	792/792	ABOIBO010000046.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.denovo.53, whole genome shotgun sequence	944..1735	Spectinomycin, Streptomycin	FJ460181	aac(6')-Iaa	100	438/438	ABOIBO010000057.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.guided.32, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIBO010000061.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.guided.44, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIBO010000061.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.guided.44, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	aadA17	98.86	792/792	ABOIBO010000063.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.guided.50, whole genome shotgun sequence	985..1776	Spectinomycin, Streptomycin	FJ460181	blaTEM-1B	100	861/861	ABOIBO010000050.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.denovo.58, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOIBO010000065.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.guided.60, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	lnu(F)	99.88	822/822	ABOIBO010000046.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.denovo.53, whole genome shotgun sequence	1867..2688	Lincomycin	EU118119	lnu(F)	99.88	822/822	ABOIBO010000063.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.guided.50, whole genome shotgun sequence	1908..2729	Lincomycin	EU118119	floR	98.11	1214/1215	ABOIBO010000041.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.denovo.46, whole genome shotgun sequence	1100..2313	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABOIBO010000062.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.guided.48, whole genome shotgun sequence	2016..3229	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABOIBO010000049.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.denovo.57, whole genome shotgun sequence	737..1393	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOIBO010000064.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.guided.56, whole genome shotgun sequence	590..1246	Ciprofloxacin	AB187515	sul2	100	816/816	ABOIBO010000040.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.denovo.45, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOIBO010000061.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.guided.44, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOIBO010000038.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.denovo.42, whole genome shotgun sequence	63..1268	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOIBO010000060.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.guided.40, whole genome shotgun sequence	4114..5319	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOIBO010000037.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.denovo.41, whole genome shotgun sequence	2185..2866	enterobacteriales	IncFIC(FII)	94	500 / 499	ABOIBO010000024.1 Salmonella enterica strain PNUSAS394785 SAMN37942574-rid19944823.denovo.24, whole genome shotgun sequence	55553..56049																																																avrA	ABOIBO010000001.1	540735..541604	99.885	870	0						
GCA_033018455.1_PDT001764644.1_genomic.fna	Salmonella_enterica	0.5212	455.945 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIBR010000001.1 Salmonella enterica strain PNUSAS352100 SAMN35528110-rid18242583.denovo.01, whole genome shotgun sequence	767503..767940	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIBR010000029.1 Salmonella enterica strain PNUSAS352100 SAMN35528110-rid18242583.guided.15, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIBR010000015.1 Salmonella enterica strain PNUSAS352100 SAMN35528110-rid18242583.denovo.16, whole genome shotgun sequence	40542..41184	enterobacteriales	IncFII(S)	100	262 / 262	ABOIBR010000019.1 Salmonella enterica strain PNUSAS352100 SAMN35528110-rid18242583.denovo.22, whole genome shotgun sequence	3394..3655																																																avrA	ABOIBR010000007.1	176431..177300	99.54	870	0						
GCA_033018475.1_PDT001764642.1_genomic.fna	Salmonella_enterica	0.5214	219.376 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIBT010000001.1 Salmonella enterica strain PNUSAS352101 SAMN35528108-rid18242563.denovo.01, whole genome shotgun sequence	337830..338267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIBT010000050.1 Salmonella enterica strain PNUSAS352101 SAMN35528108-rid18242563.guided.20, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIBT010000003.1	171427..172295	99.77	870	0						
GCA_033018495.1_PDT001764643.1_genomic.fna	Salmonella_enterica	0.52	548.395 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIBS010000001.1 Salmonella enterica strain PNUSAS352099 SAMN35528090-rid18242573.denovo.01, whole genome shotgun sequence	493338..493775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIBS010000026.1 Salmonella enterica strain PNUSAS352099 SAMN35528090-rid18242573.guided.15, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIBS010000004.1	145457..146326	98.966	870	0						
GCA_033018515.1_PDT001764641.1_genomic.fna	Salmonella_enterica	0.5213	389.27 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIBU010000001.1 Salmonella enterica strain PNUSAS352056 SAMN35527825-rid18242553.denovo.01, whole genome shotgun sequence	414612..415049	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIBU010000019.1 Salmonella enterica strain PNUSAS352056 SAMN35527825-rid18242553.guided.18, whole genome shotgun sequence	6926..7363	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033018535.1_PDT001764639.1_genomic.fna	Salmonella_enterica	0.5207	382.099 KB	5	aroC_118,dnaN_175,hemD_8,hisD_115,purE_88,sucA_906,thrA_84	6063	35:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,Col440II	aroC	100	100	aroC_118	dnaN	100	100	dnaN_175	hemD	100	100	hemD_8	hisD	100	100	hisD_115	purE	100	100	purE_88	sucA	100	100	sucA_906	thrA	100	100	thrA_84	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIBW010000007.1 Salmonella enterica strain PNUSAS352050 SAMN35527989-rid18242533.denovo.07, whole genome shotgun sequence	276860..277297	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOIBW010000048.1 Salmonella enterica strain PNUSAS352050 SAMN35527989-rid18242533.guided.31, whole genome shotgun sequence	8067..8504	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	93.64	110 / 114	ABOIBW010000032.1 Salmonella enterica strain PNUSAS352050 SAMN35527989-rid18242533.denovo.35, whole genome shotgun sequence	1189..1298	enterobacteriales	Col440II	97.16	282 / 282	ABOIBW010000030.1 Salmonella enterica strain PNUSAS352050 SAMN35527989-rid18242533.denovo.33, whole genome shotgun sequence	5136..5417																																																avrA	ABOIBW010000003.1	39345..40214	99.08	870	0						
GCA_033018555.1_PDT001764636.1_genomic.fna	Salmonella_enterica	0.5217	275.099 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIBZ010000001.1 Salmonella enterica strain PNUSAS352102 SAMN35528107-rid18242503.denovo.01, whole genome shotgun sequence	261738..262175	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIBZ010000048.1 Salmonella enterica strain PNUSAS352102 SAMN35528107-rid18242503.guided.35, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIBZ010000003.1	171578..172446	99.77	870	0						
GCA_033018595.1_PDT001764638.1_genomic.fna	Salmonella_enterica	0.5214	273.787 KB	6	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),ColRNAI	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOIBY010000001.1 Salmonella enterica strain PNUSAS352112 SAMN35528111-rid18242523.denovo.01, whole genome shotgun sequence	479994..480431	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOIBY010000044.1 Salmonella enterica strain PNUSAS352112 SAMN35528111-rid18242523.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOIBY010000027.1 Salmonella enterica strain PNUSAS352112 SAMN35528111-rid18242523.denovo.30, whole genome shotgun sequence	239..369	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOIBY010000030.1 Salmonella enterica strain PNUSAS352112 SAMN35528111-rid18242523.denovo.33, whole genome shotgun sequence	186..316		enterobacteriales	ColRNAI	90.08	131 / 130	ABOIBY010000028.1 Salmonella enterica strain PNUSAS352112 SAMN35528111-rid18242523.denovo.31, whole genome shotgun sequence	3981..4111																																									avrA	ABOIBY010000003.1	409483..410352	99.425	870	0						
GCA_033018615.1_PDT001764640.1_genomic.fna	Salmonella_enterica	0.5229	513.196 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOIBV010000001.1 Salmonella enterica strain PNUSAS352059 SAMN35527822-rid18242543.denovo.01, whole genome shotgun sequence	659134..659571	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOIBV010000031.1 Salmonella enterica strain PNUSAS352059 SAMN35527822-rid18242543.guided.20, whole genome shotgun sequence	9096..9533	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIBV010000003.1	407822..408691	99.31	870	0						
GCA_033018635.1_PDT001764634.1_genomic.fna	Salmonella_enterica	0.5205	489.663 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOICA010000001.1 Salmonella enterica strain PNUSAS352052 SAMN35527819-rid18242483.denovo.01, whole genome shotgun sequence	293262..293699	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOICA010000026.1 Salmonella enterica strain PNUSAS352052 SAMN35527819-rid18242483.guided.19, whole genome shotgun sequence	8401..8838	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOICA010000013.1 Salmonella enterica strain PNUSAS352052 SAMN35527819-rid18242483.denovo.13, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABOICA010000013.1 Salmonella enterica strain PNUSAS352052 SAMN35527819-rid18242483.denovo.13, whole genome shotgun sequence	4078..4339		enterobacteriales	IncX1	98.4	374 / 374	ABOICA010000015.1 Salmonella enterica strain PNUSAS352052 SAMN35527819-rid18242483.denovo.15, whole genome shotgun sequence	10523..10896																																									avrA	ABOICA010000002.1	505369..506238	99.54	870	0						
GCA_033018655.1_PDT001764632.1_genomic.fna	Salmonella_enterica	0.5211	304.38 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOICC010000001.1 Salmonella enterica strain PNUSAS352082 SAMN35528017-rid18242463.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOICC010000026.1 Salmonella enterica strain PNUSAS352082 SAMN35528017-rid18242463.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOICC010000016.1 Salmonella enterica strain PNUSAS352082 SAMN35528017-rid18242463.denovo.16, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABOICC010000016.1 Salmonella enterica strain PNUSAS352082 SAMN35528017-rid18242463.denovo.16, whole genome shotgun sequence	53092..53353																																																avrA	ABOICC010000002.1	553322..554191	99.54	870	0						
GCA_033018675.1_PDT001764631.1_genomic.fna	Salmonella_enterica	0.5199	508.095 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(S),IncFII(SARC14)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOICD010000005.1 Salmonella enterica strain PNUSAS352048 SAMN35527813-rid18242453.denovo.05, whole genome shotgun sequence	145126..145563	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOICD010000028.1 Salmonella enterica strain PNUSAS352048 SAMN35527813-rid18242453.guided.18, whole genome shotgun sequence	9994..10431	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	93.63	251 / 262	ABOICD010000012.1 Salmonella enterica strain PNUSAS352048 SAMN35527813-rid18242453.denovo.12, whole genome shotgun sequence	23144..23391	enterobacteriales	IncFII(SARC14)	95.07	446 / 445	ABOICD010000012.1 Salmonella enterica strain PNUSAS352048 SAMN35527813-rid18242453.denovo.12, whole genome shotgun sequence	22440..22884																																																avrA	ABOICD010000002.1	510716..511585	99.425	870	0						
GCA_033018695.1_PDT001764630.1_genomic.fna	Salmonella_enterica	0.5197	250.382 KB	8	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440II,Col440II	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOICE010000003.1 Salmonella enterica strain PNUSAS352103 SAMN35528091-rid18242443.denovo.03, whole genome shotgun sequence	153902..154339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOICE010000049.1 Salmonella enterica strain PNUSAS352103 SAMN35528091-rid18242443.guided.22, whole genome shotgun sequence	11765..12202	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440II	97.16	282 / 282	ABOICE010000034.1 Salmonella enterica strain PNUSAS352103 SAMN35528091-rid18242443.denovo.37, whole genome shotgun sequence	5136..5417	enterobacteriales	Col440II	97.52	282 / 282	ABOICE010000038.1 Salmonella enterica strain PNUSAS352103 SAMN35528091-rid18242443.denovo.41, whole genome shotgun sequence	89..370																																																											
GCA_033018715.1_PDT001764629.1_genomic.fna	Salmonella_enterica	0.5221	506.084 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOICF010000001.1 Salmonella enterica strain PNUSAS352106 SAMN35528089-rid18242433.denovo.01, whole genome shotgun sequence	177321..177758	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOICF010000028.1 Salmonella enterica strain PNUSAS352106 SAMN35528089-rid18242433.guided.21, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOICF010000002.1	550463..551332	99.77	870	0						
GCA_033018735.1_PDT001764633.1_genomic.fna	Salmonella_enterica	0.5209	186.997 KB	11	aroC_48,dnaN_108,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	356	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI2(Delta)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_108	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOICB010000010.1 Salmonella enterica strain PNUSAS352081 SAMN35528036-rid18242473.denovo.10, whole genome shotgun sequence	37916..38353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOICB010000064.1 Salmonella enterica strain PNUSAS352081 SAMN35528036-rid18242473.guided.45, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI2(Delta)	100	316 / 316	ABOICB010000027.1 Salmonella enterica strain PNUSAS352081 SAMN35528036-rid18242473.denovo.27, whole genome shotgun sequence	26502..26817																																																																	
GCA_033018755.1_PDT001764628.1_genomic.fna	Salmonella_enterica	0.5225	397.626 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOICG010000001.1 Salmonella enterica strain PNUSAS352111 SAMN35528095-rid18242423.denovo.01, whole genome shotgun sequence	790285..790722	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOICG010000031.1 Salmonella enterica strain PNUSAS352111 SAMN35528095-rid18242423.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOICG010000006.1	94986..95855	98.851	870	0						
GCA_033018775.1_PDT001764627.1_genomic.fna	Salmonella_enterica	0.5206	411.548 KB	5	aroC_7,dnaN_107,hemD_79,hisD_235,purE_192,sucA_193,thrA_105*	647*	45:m,t:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_235	purE	100	100	purE_192	sucA	100	100	sucA_193	thrA	99.8003992015968	100	thrA_105*	45	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Apapa		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOICH010000003.1 Salmonella enterica strain PNUSAS352104 SAMN35528092-rid18242413.denovo.03, whole genome shotgun sequence	301285..301722	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOICH010000052.1 Salmonella enterica strain PNUSAS352104 SAMN35528092-rid18242413.guided.27, whole genome shotgun sequence	15913..16350	Amikacin, Tobramycin	NC_003197	fosA7	95.98	423/423	ABOICH010000001.1 Salmonella enterica strain PNUSAS352104 SAMN35528092-rid18242413.denovo.01, whole genome shotgun sequence	400404..400825	Fosfomycin	LAPJ01000014	fosA7	95.98	423/423	ABOICH010000054.1 Salmonella enterica strain PNUSAS352104 SAMN35528092-rid18242413.guided.33, whole genome shotgun sequence	3060..3481	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOICH010000002.1	125745..126614	99.655	870	0						
GCA_033018795.1_PDT001764625.1_genomic.fna	Salmonella_enterica	0.523	508.82 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOICI010000001.1 Salmonella enterica strain PNUSAS352046 SAMN35527991-rid18242393.denovo.01, whole genome shotgun sequence	667526..667963	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOICI010000032.1 Salmonella enterica strain PNUSAS352046 SAMN35527991-rid18242393.guided.23, whole genome shotgun sequence	3709..4146	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOICI010000002.1	407821..408690	99.31	870	0						
GCA_033018815.1_PDT001764624.1_genomic.fna	Salmonella_enterica	0.5209	399.302 KB	5	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	9	aac(6')-Iaa,aadA2,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aadA2,aph(6)-Id,aph(3'')-Ib,qnrB19,qnrB19,sul1,sul2,sul1,sul2,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncR	aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOICJ010000002.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.denovo.02, whole genome shotgun sequence	159089..159526	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOICJ010000023.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.denovo.26, whole genome shotgun sequence	4170..4961	Spectinomycin, Streptomycin	JQ364967	aph(3'')-Ib	99.88	804/804	ABOICJ010000036.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.denovo.44, whole genome shotgun sequence	732..1535	Streptomycin	AF321551	aph(6)-Id	99.86	732/837	ABOICJ010000036.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.denovo.44, whole genome shotgun sequence	1..732	Streptomycin	AF024602	aph(6)-Id	99.86	732/837	ABOICJ010000036.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.denovo.44, whole genome shotgun sequence	1..732	Streptomycin	18676889	aph(6)-Id	99.86	732/837	ABOICJ010000036.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.denovo.44, whole genome shotgun sequence	1..732	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABOICJ010000046.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.guided.22, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOICJ010000048.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.guided.29, whole genome shotgun sequence	1563..2354	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	99.88	837/837	ABOICJ010000051.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.guided.40, whole genome shotgun sequence	836..1672	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOICJ010000051.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.guided.40, whole genome shotgun sequence	33..836	Streptomycin	AF321551	qnrB19	100	645/645	ABOICJ010000030.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.denovo.36, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOICJ010000050.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.guided.35, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul1	100	840/840	ABOICJ010000023.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.denovo.26, whole genome shotgun sequence	2826..3665	Sulfamethoxazole	U12338	sul2	100	816/816	ABOICJ010000029.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.denovo.34, whole genome shotgun sequence	28..843	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOICJ010000048.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.guided.29, whole genome shotgun sequence	2859..3698	Sulfamethoxazole	U12338	sul2	100	816/816	ABOICJ010000052.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.guided.42, whole genome shotgun sequence	749..1564	Sulfamethoxazole	AY034138	tet(A)	99.92	1200/1200	ABOICJ010000027.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.denovo.32, whole genome shotgun sequence	2428..3627	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOICJ010000049.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.guided.31, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABOICJ010000023.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.denovo.26, whole genome shotgun sequence	5369..5866	Trimethoprim	AM040708	dfrA12	100	498/498	ABOICJ010000048.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.guided.29, whole genome shotgun sequence	658..1155	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOICJ010000030.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.denovo.36, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOICJ010000050.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.guided.35, whole genome shotgun sequence	2145..2275		enterobacteriales	IncR	100	251 / 251	ABOICJ010000022.1 Salmonella enterica strain PNUSAS352110 SAMN35528094-rid18242383.denovo.24, whole genome shotgun sequence	8306..8556																																																				
GCA_033018835.1_PDT001764623.1_genomic.fna	Salmonella_enterica	0.5212	283.015 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOICK010000003.1 Salmonella enterica strain PNUSAS352084 SAMN35528031-rid18242373.denovo.03, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOICK010000030.1 Salmonella enterica strain PNUSAS352084 SAMN35528031-rid18242373.guided.18, whole genome shotgun sequence	9688..10125	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOICK010000001.1	553395..554264	99.54	870	0						
GCA_033018855.1_PDT001764622.1_genomic.fna	Salmonella_enterica	0.5204	486.929 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOICM010000001.1 Salmonella enterica strain PNUSAS352086 SAMN35528037-rid18242363.denovo.01, whole genome shotgun sequence	487477..487914	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOICM010000039.1 Salmonella enterica strain PNUSAS352086 SAMN35528037-rid18242363.guided.19, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOICM010000023.1 Salmonella enterica strain PNUSAS352086 SAMN35528037-rid18242363.denovo.26, whole genome shotgun sequence	1480..1610	enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOICM010000026.1 Salmonella enterica strain PNUSAS352086 SAMN35528037-rid18242363.denovo.29, whole genome shotgun sequence	547..675																																																avrA	ABOICM010000003.1	145140..146009	98.966	870	0						
GCA_033018875.1_PDT001764621.1_genomic.fna	Salmonella_enterica	0.5221	249.125 KB	6	aroC_43,dnaN_41,hemD_16,hisD_13,purE_41,sucA_13,thrA_4	2328	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_41	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOICN010000006.1 Salmonella enterica strain PNUSAS352049 SAMN35527810-rid18242353.denovo.06, whole genome shotgun sequence	80769..81206	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOICN010000028.1 Salmonella enterica strain PNUSAS352049 SAMN35527810-rid18242353.guided.24, whole genome shotgun sequence	14928..15365	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033018915.1_PDT001952713.1_genomic.fna	Salmonella_enterica	0.5214	400.789 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOICP010000001.1 Salmonella enterica strain PNUSAS394861 SAMN37946748-rid19945513.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOICP010000036.1 Salmonella enterica strain PNUSAS394861 SAMN37946748-rid19945513.guided.27, whole genome shotgun sequence	2011..2448	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOICP010000020.1 Salmonella enterica strain PNUSAS394861 SAMN37946748-rid19945513.denovo.22, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOICP010000025.1 Salmonella enterica strain PNUSAS394861 SAMN37946748-rid19945513.denovo.28, whole genome shotgun sequence	3423..3684																																																avrA	ABOICP010000002.1	553077..553946	99.54	870	0						
GCA_033018935.1_PDT001764612.1_genomic.fna	Salmonella_enterica	0.5219	593.862 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOICO010000001.1 Salmonella enterica strain PNUSAS352083 SAMN35528030-rid18242263.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOICO010000018.1 Salmonella enterica strain PNUSAS352083 SAMN35528030-rid18242263.guided.13, whole genome shotgun sequence	9650..10087	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOICO010000003.1	553511..554380	99.655	870	0						
GCA_033018955.1_PDT001952703.1_genomic.fna	Salmonella_enterica	0.5208	412.174 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOICR010000001.1 Salmonella enterica strain PNUSAS395013 SAMN37946687-rid19945483.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOICR010000029.1 Salmonella enterica strain PNUSAS395013 SAMN37946687-rid19945483.guided.17, whole genome shotgun sequence	26227..26664	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABOICR010000020.1 Salmonella enterica strain PNUSAS395013 SAMN37946687-rid19945483.denovo.23, whole genome shotgun sequence	3981..4111	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOICR010000016.1 Salmonella enterica strain PNUSAS395013 SAMN37946687-rid19945483.denovo.18, whole genome shotgun sequence	48101..48743		enterobacteriales	IncFII(S)	100	262 / 262	ABOICR010000016.1 Salmonella enterica strain PNUSAS395013 SAMN37946687-rid19945483.denovo.18, whole genome shotgun sequence	3859..4120																																									avrA	ABOICR010000002.1	552776..553645	99.54	870	0						
GCA_033018975.1_PDT001952701.1_genomic.fna	Salmonella_enterica	0.5214	651.762 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOICS010000001.1 Salmonella enterica strain PNUSAS394905 SAMN37946181-rid19945473.denovo.01, whole genome shotgun sequence	594020..594457	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOICS010000027.1 Salmonella enterica strain PNUSAS394905 SAMN37946181-rid19945473.guided.13, whole genome shotgun sequence	17343..17780	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOICS010000004.1	556168..557036	99.425	870	0						
GCA_033018995.1_PDT001952711.1_genomic.fna	Salmonella_enterica	0.5212	399.529 KB	4	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOICQ010000001.1 Salmonella enterica strain PNUSAS395022 SAMN37946697-rid19945503.denovo.01, whole genome shotgun sequence	137349..137786	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOICQ010000025.1 Salmonella enterica strain PNUSAS395022 SAMN37946697-rid19945503.guided.18, whole genome shotgun sequence	21027..21464	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOICQ010000002.1	576536..577404	99.425	870	0						
GCA_033019015.1_PDT001952696.1_genomic.fna	Salmonella_enterica	0.5209	489.739 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOICU010000001.1 Salmonella enterica strain PNUSAS395025 SAMN37946684-rid19945453.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOICU010000027.1 Salmonella enterica strain PNUSAS395025 SAMN37946684-rid19945453.guided.14, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOICU010000015.1 Salmonella enterica strain PNUSAS395025 SAMN37946684-rid19945453.denovo.17, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABOICU010000015.1 Salmonella enterica strain PNUSAS395025 SAMN37946684-rid19945453.denovo.17, whole genome shotgun sequence	4078..4339																																																avrA	ABOICU010000002.1	553181..554050	99.54	870	0						
GCA_033019025.1_PDT001952700.1_genomic.fna	Salmonella_enterica	0.5213	331.834 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOICT010000001.1 Salmonella enterica strain PNUSAS394894 SAMN37944457-rid19946043.denovo.01, whole genome shotgun sequence	477376..477813	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOICT010000033.1 Salmonella enterica strain PNUSAS394894 SAMN37944457-rid19946043.guided.23, whole genome shotgun sequence	28799..29236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOICT010000012.1	93875..94745	99.196	871	0						
GCA_033019055.1_PDT001952691.1_genomic.fna	Salmonella_enterica	0.5218	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOICV010000001.1 Salmonella enterica strain PNUSAS394906 SAMN37944460-rid19945433.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOICV010000030.1 Salmonella enterica strain PNUSAS394906 SAMN37944460-rid19945433.guided.18, whole genome shotgun sequence	11073..11510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOICV010000002.1	151609..152478	98.966	870	0						
GCA_033019075.1_PDT001952678.1_genomic.fna	Salmonella_enterica	0.5207	670.228 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOICW010000001.1 Salmonella enterica strain PNUSAS394899 SAMN37945709-rid19945393.denovo.01, whole genome shotgun sequence	717725..718162	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOICW010000031.1 Salmonella enterica strain PNUSAS394899 SAMN37945709-rid19945393.guided.18, whole genome shotgun sequence	44263..44700	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOICW010000021.1 Salmonella enterica strain PNUSAS394899 SAMN37945709-rid19945393.denovo.23, whole genome shotgun sequence	11459..12101																																																						avrA	ABOICW010000003.1	529373..530242	99.425	870	0						
GCA_033019095.1_PDT001952660.1_genomic.fna	Salmonella_enterica	0.5155	346.561 KB	6	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX3	aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABOICX010000002.1 Salmonella enterica strain PNUSAS394870 SAMN37944471-rid19945783.denovo.02, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABOICX010000046.1 Salmonella enterica strain PNUSAS394870 SAMN37944471-rid19945783.guided.31, whole genome shotgun sequence	4349..4786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX3	99.2	374 / 374	ABOICX010000021.1 Salmonella enterica strain PNUSAS394870 SAMN37944471-rid19945783.denovo.22, whole genome shotgun sequence	24322..24695																																																																	
GCA_033019115.1_PDT001952656.1_genomic.fna	Salmonella_enterica	0.5171	193.493 KB	9	aroC_488,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2058	48:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_488	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:z4,z32:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABOICY010000034.1 Salmonella enterica strain PNUSAS394919 SAMN37945672-rid19945313.denovo.35, whole genome shotgun sequence	6573..7010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABOICY010000059.1 Salmonella enterica strain PNUSAS394919 SAMN37945672-rid19945313.guided.36, whole genome shotgun sequence	4359..4796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOICY010000011.1 Salmonella enterica strain PNUSAS394919 SAMN37945672-rid19945313.denovo.11, whole genome shotgun sequence	38587..39229																																																																	
GCA_033019135.1_PDT001952651.1_genomic.fna	Salmonella_enterica	0.521	508.713 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOICZ010000005.1 Salmonella enterica strain PNUSAS394929 SAMN37945689-rid19945293.denovo.05, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOICZ010000025.1 Salmonella enterica strain PNUSAS394929 SAMN37945689-rid19945293.guided.20, whole genome shotgun sequence	9628..10065	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOICZ010000002.1	160314..161183	99.54	870	0						
GCA_033019155.1_PDT001952641.1_genomic.fna	Salmonella_enterica	0.5208	396.715 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIDA010000009.1 Salmonella enterica strain PNUSAS394976 SAMN37946168-rid19945243.denovo.09, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIDA010000035.1 Salmonella enterica strain PNUSAS394976 SAMN37946168-rid19945243.guided.19, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOIDA010000019.1 Salmonella enterica strain PNUSAS394976 SAMN37946168-rid19945243.denovo.20, whole genome shotgun sequence	34963..35496																																																						avrA	ABOIDA010000001.1	39568..40434	98.966	870	0						
GCA_033019175.1_PDT001952635.1_genomic.fna	Salmonella_enterica	0.522	410.755 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOIDC010000001.1 Salmonella enterica strain PNUSAS394914 SAMN37945687-rid19945653.denovo.01, whole genome shotgun sequence	482163..482600	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOIDC010000027.1 Salmonella enterica strain PNUSAS394914 SAMN37945687-rid19945653.guided.23, whole genome shotgun sequence	3709..4146	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIDC010000002.1	563277..564146	99.77	870	0						
GCA_033019185.1_PDT001952639.1_genomic.fna	Salmonella_enterica	0.5223	296.976 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIDB010000001.1 Salmonella enterica strain PNUSAS394890 SAMN37945703-rid19945233.denovo.01, whole genome shotgun sequence	170676..171113	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIDB010000051.1 Salmonella enterica strain PNUSAS394890 SAMN37945703-rid19945233.guided.27, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIDB010000005.1	39343..40212	99.31	870	0						
GCA_033019215.1_PDT001952631.1_genomic.fna	Salmonella_enterica	0.5213	363.133 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIDE010000001.1 Salmonella enterica strain PNUSAS394888 SAMN37944458-rid19945193.denovo.01, whole genome shotgun sequence	477376..477813	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIDE010000034.1 Salmonella enterica strain PNUSAS394888 SAMN37944458-rid19945193.guided.23, whole genome shotgun sequence	12815..13252	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIDE010000011.1	93876..94746	99.196	871	0						
GCA_033019235.1_PDT001952633.1_genomic.fna	Salmonella_enterica	0.522	531.6 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIDD010000001.1 Salmonella enterica strain PNUSAS394884 SAMN37944466-rid19945643.denovo.01, whole genome shotgun sequence	145233..145670	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOIDD010000024.1 Salmonella enterica strain PNUSAS394884 SAMN37944466-rid19945643.guided.14, whole genome shotgun sequence	20691..21128	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIDD010000002.1	554602..555471	99.77	870	0						
GCA_033019255.1_PDT001952627.1_genomic.fna	Salmonella_enterica	0.5208	522.684 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOIDG010000001.1 Salmonella enterica strain PNUSAS394881 SAMN37944455-rid19945613.denovo.01, whole genome shotgun sequence	428007..428444	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOIDG010000020.1 Salmonella enterica strain PNUSAS394881 SAMN37944455-rid19945613.guided.13, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIDG010000003.1	160314..161183	99.54	870	0						
GCA_033019275.1_PDT001952620.1_genomic.fna	Salmonella_enterica	0.522	430.868 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(BS512),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOIDI010000001.1 Salmonella enterica strain PNUSAS394868 SAMN37945670-rid19945583.denovo.01, whole genome shotgun sequence	594156..594593	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOIDI010000029.1 Salmonella enterica strain PNUSAS394868 SAMN37945670-rid19945583.guided.21, whole genome shotgun sequence	9321..9758	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(BS512)	100	233 / 233	ABOIDI010000021.1 Salmonella enterica strain PNUSAS394868 SAMN37945670-rid19945583.denovo.24, whole genome shotgun sequence	400..632	enterobacteriales	IncI1-I(Alpha)	95.65	138 / 142	ABOIDI010000013.1 Salmonella enterica strain PNUSAS394868 SAMN37945670-rid19945583.denovo.13, whole genome shotgun sequence	70608..70743																																																avrA	ABOIDI010000003.1	149997..150865	99.425	870	0						
GCA_033019295.1_PDT001952621.1_genomic.fna	Salmonella_enterica	0.5216	189.787 KB	9	aroC_48,dnaN_108,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	356	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_108	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIDH010000009.1 Salmonella enterica strain PNUSAS394903 SAMN37944469-rid19945133.denovo.09, whole genome shotgun sequence	37958..38395	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIDH010000058.1 Salmonella enterica strain PNUSAS394903 SAMN37944469-rid19945133.guided.34, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033019315.1_PDT001952619.1_genomic.fna	Salmonella_enterica	0.5221	297.612 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIDJ010000002.1 Salmonella enterica strain PNUSAS394880 SAMN37944453-rid19945123.denovo.02, whole genome shotgun sequence	173843..174280	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIDJ010000029.1 Salmonella enterica strain PNUSAS394880 SAMN37944453-rid19945123.guided.22, whole genome shotgun sequence	25269..25706	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIDJ010000003.1	28833..29702	98.966	870	0						
GCA_033019335.1_PDT001952629.1_genomic.fna	Salmonella_enterica	0.5209	233.961 KB	7	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOIDF010000002.1 Salmonella enterica strain PNUSAS394912 SAMN37945684-rid19945183.denovo.02, whole genome shotgun sequence	239134..239571	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOIDF010000052.1 Salmonella enterica strain PNUSAS394912 SAMN37945684-rid19945183.guided.29, whole genome shotgun sequence	3149..3586	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOIDF010000033.1 Salmonella enterica strain PNUSAS394912 SAMN37945684-rid19945183.denovo.35, whole genome shotgun sequence	7807..8449	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOIDF010000031.1 Salmonella enterica strain PNUSAS394912 SAMN37945684-rid19945183.denovo.33, whole genome shotgun sequence	10978..11204																																																											
GCA_033019355.1_PDT001952616.1_genomic.fna	Salmonella_enterica	0.5216	493.034 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOIDK010000001.1 Salmonella enterica strain PNUSAS394926 SAMN37945674-rid19945103.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOIDK010000026.1 Salmonella enterica strain PNUSAS394926 SAMN37945674-rid19945103.guided.16, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIDK010000002.1	409459..410328	99.425	870	0						
GCA_033019375.1_PDT001952613.1_genomic.fna	Salmonella_enterica	0.5137	177.996 KB	10	aroC_380,dnaN_482,hemD_276,hisD_511,purE_240,sucA_360,thrA_208	2868	40:z4,z32:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_380	dnaN	100	100	dnaN_482	hemD	100	100	hemD_276	hisD	100	100	hisD_511	purE	100	100	purE_240	sucA	100	100	sucA_360	thrA	100	100	thrA_208	40	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV [1],40:z4,z32:-	SalmID reports this as ssp VII, which has not been formally recognized.	O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033019395.1_PDT001952615.1_genomic.fna	Salmonella_enterica	0.5209	510.841 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOIDL010000005.1 Salmonella enterica strain PNUSAS394927 SAMN37945671-rid19945563.denovo.05, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOIDL010000025.1 Salmonella enterica strain PNUSAS394927 SAMN37945671-rid19945563.guided.19, whole genome shotgun sequence	10176..10613	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIDL010000002.1	160347..161216	99.54	870	0						
GCA_033019415.1_PDT001952612.1_genomic.fna	Salmonella_enterica	0.5212	300.987 KB	6	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOIDN010000002.1 Salmonella enterica strain PNUSAS394891 SAMN37944459-rid19945553.denovo.02, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOIDN010000046.1 Salmonella enterica strain PNUSAS394891 SAMN37944459-rid19945553.guided.24, whole genome shotgun sequence	2849..3286	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIDN010000012.1	101941..102810	99.655	870	0						
GCA_033019435.1_PDT001952595.1_genomic.fna	Salmonella_enterica	0.5186	175.865 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	14	aac(6')-Iaa,aac(3)-IId,aadA22,aph(3')-Ia,aac(6')-Iaa,aac(3)-IId,aadA22,aph(3')-Ia,blaCTX-M-55,blaTEM-1B,blaLAP-2,blaTEM-1B,blaLAP-2,blaCTX-M-55,mph(A),lnu(F),mph(A),lnu(F),floR,floR,qnrS1,qnrB19,qnrB19,qnrS1,sul3,sul3,tet(B),tet(B)	0		4	Col(pHAD28),IncHI2,IncHI2A,IncN	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIDO010000001.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.01, whole genome shotgun sequence	589771..590208	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABOIDO010000049.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.56, whole genome shotgun sequence	263..1123	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABOIDO010000053.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.64, whole genome shotgun sequence	944..1735	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABOIDO010000054.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.68, whole genome shotgun sequence	239..1054	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EF015636	aac(6')-Iaa	100	438/438	ABOIDO010000065.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.guided.40, whole genome shotgun sequence	7353..7790	Amikacin, Tobramycin	NC_003197	aac(3)-IId	99.88	861/861	ABOIDO010000071.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.guided.57, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA22	100	792/792	ABOIDO010000074.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.guided.63, whole genome shotgun sequence	985..1776	Spectinomycin, Streptomycin	AM261837	aph(3')-Ia	99.88	816/816	ABOIDO010000077.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.guided.67, whole genome shotgun sequence	163..978	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EF015636	blaCTX-M-55	100	876/876	ABOIDO010000040.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.44, whole genome shotgun sequence	2355..3230	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaTEM-1B	100	861/861	ABOIDO010000046.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.51, whole genome shotgun sequence	469..1329	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABOIDO010000046.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.51, whole genome shotgun sequence	3533..4390	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaTEM-1B	100	861/861	ABOIDO010000068.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.guided.50, whole genome shotgun sequence	510..1370	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaLAP-2	100	858/858	ABOIDO010000068.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.guided.50, whole genome shotgun sequence	3574..4431	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaCTX-M-55	100	876/876	ABOIDO010000069.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.guided.54, whole genome shotgun sequence	87..962	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	mph(A)	100	906/906	ABOIDO010000050.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.59, whole genome shotgun sequence	2576..3481	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABOIDO010000053.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.64, whole genome shotgun sequence	1867..2688	Lincomycin	EU118119	mph(A)	100	906/906	ABOIDO010000072.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.guided.58, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABOIDO010000074.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.guided.63, whole genome shotgun sequence	1908..2729	Lincomycin	EU118119	floR	98.11	1214/1215	ABOIDO010000039.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.43, whole genome shotgun sequence	875..2088	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABOIDO010000070.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.guided.55, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABOIDO010000048.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.53, whole genome shotgun sequence	3130..3786	Ciprofloxacin	AB187515	qnrB19	100	645/645	ABOIDO010000052.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.61, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOIDO010000075.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.guided.65, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	qnrS1	100	657/657	ABOIDO010000076.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.guided.66, whole genome shotgun sequence	509..1165	Ciprofloxacin	AB187515	sul3	100	792/792	ABOIDO010000038.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.39, whole genome shotgun sequence	13388..14179	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOIDO010000073.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.guided.62, whole genome shotgun sequence	2060..2851	Sulfamethoxazole	AJ459418	tet(B)	100	1206/1206	ABOIDO010000037.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.38, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOIDO010000067.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.guided.42, whole genome shotgun sequence	5245..6450	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																								enterobacteriales	Col(pHAD28)	100	131 / 131	ABOIDO010000052.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.61, whole genome shotgun sequence	1522..1652	enterobacteriales	IncHI2	100	327 / 327	ABOIDO010000016.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.16, whole genome shotgun sequence	67148..67474		enterobacteriales	IncHI2A	99.52	630 / 630	ABOIDO010000016.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.16, whole genome shotgun sequence	85458..86087		enterobacteriales	IncN	100	513 / 514	ABOIDO010000055.1 Salmonella enterica strain PNUSAS394797 SAMN37942581-rid19944923.denovo.69, whole genome shotgun sequence	470..982																																		avrA	ABOIDO010000002.1	434659..435528	99.885	870	0						
GCA_033019455.1_PDT001764626.1_genomic.fna	Salmonella_enterica	0.5213	263 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIDQ010000002.1 Salmonella enterica strain PNUSAS352109 SAMN35528097-rid18242403.denovo.02, whole genome shotgun sequence	154159..154596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIDQ010000038.1 Salmonella enterica strain PNUSAS352109 SAMN35528097-rid18242403.guided.23, whole genome shotgun sequence	1357..1794	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033019475.1_PDT001764620.1_genomic.fna	Salmonella_enterica	0.521	432.527 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIDR010000001.1 Salmonella enterica strain PNUSAS352058 SAMN35527816-rid18242343.denovo.01, whole genome shotgun sequence	477404..477841	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIDR010000032.1 Salmonella enterica strain PNUSAS352058 SAMN35527816-rid18242343.guided.23, whole genome shotgun sequence	10684..11121	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOIDR010000017.1 Salmonella enterica strain PNUSAS352058 SAMN35527816-rid18242343.denovo.17, whole genome shotgun sequence	6697..7230																																																						avrA	ABOIDR010000012.1	93870..94740	99.196	871	0						
GCA_033019495.1_PDT001764635.1_genomic.fna	Salmonella_enterica	0.5209	222.974 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIDP010000001.1 Salmonella enterica strain PNUSAS352098 SAMN35528109-rid18242493.denovo.01, whole genome shotgun sequence	255336..255773	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIDP010000058.1 Salmonella enterica strain PNUSAS352098 SAMN35528109-rid18242493.guided.31, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOIDP010000036.1 Salmonella enterica strain PNUSAS352098 SAMN35528109-rid18242493.denovo.40, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOIDP010000060.1 Salmonella enterica strain PNUSAS352098 SAMN35528109-rid18242493.guided.39, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABOIDP010000002.1	402677..403546	99.885	870	0						
GCA_033019515.1_PDT001764619.1_genomic.fna	Salmonella_enterica	0.521	406.269 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIDS010000004.1 Salmonella enterica strain PNUSAS352085 SAMN35528034-rid18242333.denovo.04, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIDS010000025.1 Salmonella enterica strain PNUSAS352085 SAMN35528034-rid18242333.guided.16, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIDS010000008.1 Salmonella enterica strain PNUSAS352085 SAMN35528034-rid18242333.denovo.08, whole genome shotgun sequence	49240..49882	enterobacteriales	IncFII(S)	100	262 / 262	ABOIDS010000008.1 Salmonella enterica strain PNUSAS352085 SAMN35528034-rid18242333.denovo.08, whole genome shotgun sequence	4987..5248																																																avrA	ABOIDS010000001.1	585624..586493	99.54	870	0						
GCA_033019535.1_PDT001764616.1_genomic.fna	Salmonella_enterica	0.5203	293.183 KB	8	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIDU010000008.1 Salmonella enterica strain PNUSAS352078 SAMN35528033-rid18242303.denovo.08, whole genome shotgun sequence	90532..90969	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIDU010000070.1 Salmonella enterica strain PNUSAS352078 SAMN35528033-rid18242303.guided.31, whole genome shotgun sequence	10868..11305	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.6	643 / 643	ABOIDU010000028.1 Salmonella enterica strain PNUSAS352078 SAMN35528033-rid18242303.denovo.29, whole genome shotgun sequence	11451..12093																																																						avrA	ABOIDU010000001.1	335905..336774	99.425	870	0						
GCA_033019555.1_PDT001764617.1_genomic.fna	Salmonella_enterica	0.5215	275.099 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIDT010000001.1 Salmonella enterica strain PNUSAS352080 SAMN35528035-rid18242313.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIDT010000038.1 Salmonella enterica strain PNUSAS352080 SAMN35528035-rid18242313.guided.24, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIDT010000003.1	208058..208926	99.77	870	0						
GCA_033019575.1_PDT001764615.1_genomic.fna	Salmonella_enterica	0.5219	277.18 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIDV010000001.1 Salmonella enterica strain PNUSAS352079 SAMN35528032-rid18242293.denovo.01, whole genome shotgun sequence	727904..728341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIDV010000035.1 Salmonella enterica strain PNUSAS352079 SAMN35528032-rid18242293.guided.25, whole genome shotgun sequence	697..1134	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIDV010000003.1	95452..96321	99.195	870	0						
GCA_033019615.1_PDT001764611.1_genomic.fna	Salmonella_enterica	0.5228	275.54 KB	7	aroC_543,dnaN_69,hemD_101,hisD_12,purE_370,sucA_130,thrA_347	2553	-:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_543	dnaN	100	100	dnaN_69	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_370	sucA	100	100	sucA_130	thrA	100	100	thrA_347	-	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:y:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOIDX010000002.1 Salmonella enterica strain PNUSAS352057 SAMN35527992-rid18242253.denovo.02, whole genome shotgun sequence	247485..247922	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOIDX010000034.1 Salmonella enterica strain PNUSAS352057 SAMN35527992-rid18242253.guided.25, whole genome shotgun sequence	1650..2087	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIDX010000001.1	514046..514915	99.31	870	0						
GCA_033019635.1_PDT001764609.1_genomic.fna	Salmonella_enterica	0.5183	224.721 KB	6	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2	aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIEA010000003.1 Salmonella enterica strain PNUSAS352041 SAMN35527808-rid18242233.denovo.03, whole genome shotgun sequence	370303..370740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIEA010000050.1 Salmonella enterica strain PNUSAS352041 SAMN35527808-rid18242233.guided.31, whole genome shotgun sequence	5701..6138	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2	99.38	324 / 324	ABOIEA010000020.1 Salmonella enterica strain PNUSAS352041 SAMN35527808-rid18242233.denovo.20, whole genome shotgun sequence	27116..27439																																																																	
GCA_033019655.1_PDT001764610.1_genomic.fna	Salmonella_enterica	0.5231	508.601 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOIDY010000001.1 Salmonella enterica strain PNUSAS352039 SAMN35527990-rid18242243.denovo.01, whole genome shotgun sequence	667337..667774	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOIDY010000031.1 Salmonella enterica strain PNUSAS352039 SAMN35527990-rid18242243.guided.22, whole genome shotgun sequence	8540..8977	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIDY010000002.1	508462..509331	99.31	870	0						
GCA_033019675.1_PDT001764608.1_genomic.fna	Salmonella_enterica	0.522	202.866 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(pHN7A8)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIDZ010000002.1 Salmonella enterica strain PNUSAS352044 SAMN35527818-rid18242223.denovo.02, whole genome shotgun sequence	145345..145782	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIDZ010000051.1 Salmonella enterica strain PNUSAS352044 SAMN35527818-rid18242223.guided.42, whole genome shotgun sequence	2649..3086	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(pHN7A8)	98.08	260 / 260	ABOIDZ010000021.1 Salmonella enterica strain PNUSAS352044 SAMN35527818-rid18242223.denovo.21, whole genome shotgun sequence	37881..38140																																																						avrA	ABOIDZ010000003.1	171417..172285	99.77	870	0						
GCA_033019695.1_PDT001764605.1_genomic.fna	Salmonella_enterica	0.5209	331.807 KB	6	aroC_16,dnaN_2,hemD_95,hisD_117,purE_36,sucA_39,thrA_117	350	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_95	hisD	100	100	hisD_117	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_117	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIED010000001.1 Salmonella enterica strain PNUSAS352047 SAMN35527827-rid18242193.denovo.01, whole genome shotgun sequence	526442..526879	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIED010000041.1 Salmonella enterica strain PNUSAS352047 SAMN35527827-rid18242193.guided.31, whole genome shotgun sequence	3046..3483	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOIED010000020.1 Salmonella enterica strain PNUSAS352047 SAMN35527827-rid18242193.denovo.20, whole genome shotgun sequence	5854..6387																																																						avrA	ABOIED010000011.1	109933..110802	99.31	870	0						
GCA_033019715.1_PDT001764607.1_genomic.fna	Salmonella_enterica	0.5207	334.89 KB	5	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOIEB010000011.1 Salmonella enterica strain PNUSAS352038 SAMN35527820-rid18242213.denovo.11, whole genome shotgun sequence	80748..81185	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOIEB010000062.1 Salmonella enterica strain PNUSAS352038 SAMN35527820-rid18242213.guided.25, whole genome shotgun sequence	10170..10607	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABOIEB010000024.1 Salmonella enterica strain PNUSAS352038 SAMN35527820-rid18242213.denovo.24, whole genome shotgun sequence	12701..13343																																																						avrA	ABOIEB010000008.1	140547..141415	99.425	870	0						
GCA_033019735.1_PDT001764606.1_genomic.fna	Salmonella_enterica	0.5221	305.362 KB	6	aroC_654,dnaN_41,hemD_109,hisD_279,purE_2,sucA_100,thrA_126	3301	13:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_654	dnaN	100	100	dnaN_41	hemD	100	100	hemD_109	hisD	100	100	hisD_279	purE	100	100	purE_2	sucA	100	100	sucA_100	thrA	100	100	thrA_126	13	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Telelkebir		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOIEC010000002.1 Salmonella enterica strain PNUSAS352053 SAMN35527826-rid18242203.denovo.02, whole genome shotgun sequence	81537..81974	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOIEC010000037.1 Salmonella enterica strain PNUSAS352053 SAMN35527826-rid18242203.guided.26, whole genome shotgun sequence	8121..8558	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIEC010000014.1	39570..40439	99.08	870	0						
GCA_033019755.1_PDT001764604.1_genomic.fna	Salmonella_enterica	0.5204	257.779 KB	8	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOIEE010000004.1 Salmonella enterica strain PNUSAS352055 SAMN35527814-rid18242183.denovo.04, whole genome shotgun sequence	37879..38316	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOIEE010000078.1 Salmonella enterica strain PNUSAS352055 SAMN35527814-rid18242183.guided.33, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOIEE010000032.1 Salmonella enterica strain PNUSAS352055 SAMN35527814-rid18242183.denovo.34, whole genome shotgun sequence	11254..11896																																																						avrA	ABOIEE010000003.1	145336..146205	99.77	870	0						
GCA_033019775.1_PDT001764603.1_genomic.fna	Salmonella_enterica	0.5221	498.659 KB	5	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIEF010000005.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.denovo.05, whole genome shotgun sequence	352879..353316	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOIEF010000025.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.denovo.29, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOIEF010000036.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.guided.20, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOIEF010000038.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.guided.28, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOIEF010000025.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.denovo.29, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOIEF010000038.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.guided.28, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOIEF010000023.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.denovo.26, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOIEF010000041.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.guided.35, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOIEF010000022.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.denovo.25, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOIEF010000039.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.guided.33, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOIEF010000025.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.denovo.29, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOIEF010000038.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.guided.28, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOIEF010000029.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.denovo.37, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOIEF010000042.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.guided.36, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOIEF010000022.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.denovo.25, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOIEF010000040.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.guided.34, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOIEF010000022.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.denovo.25, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOIEF010000040.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.guided.34, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOIEF010000019.1 Salmonella enterica strain PNUSAS352045 SAMN35527817-rid18242173.denovo.21, whole genome shotgun sequence	4434..4684																																																						avrA	ABOIEF010000001.1	553310..554179	99.77	870	0						
GCA_033019795.1_PDT001764602.1_genomic.fna	Salmonella_enterica	0.5213	225.554 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIEG010000002.1 Salmonella enterica strain PNUSAS352061 SAMN35527823-rid18242163.denovo.02, whole genome shotgun sequence	145202..145639	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIEG010000037.1 Salmonella enterica strain PNUSAS352061 SAMN35527823-rid18242163.denovo.41, whole genome shotgun sequence	6786..7622	Streptomycin	M28829	aph(3'')-Ib	100	780/804	ABOIEG010000037.1 Salmonella enterica strain PNUSAS352061 SAMN35527823-rid18242163.denovo.41, whole genome shotgun sequence	7622..8401	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOIEG010000057.1 Salmonella enterica strain PNUSAS352061 SAMN35527823-rid18242163.guided.36, whole genome shotgun sequence	3874..4311	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIEG010000059.1 Salmonella enterica strain PNUSAS352061 SAMN35527823-rid18242163.guided.40, whole genome shotgun sequence	3388..4224	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIEG010000059.1 Salmonella enterica strain PNUSAS352061 SAMN35527823-rid18242163.guided.40, whole genome shotgun sequence	2585..3388	Streptomycin	AF321551	sul2	100	816/816	ABOIEG010000037.1 Salmonella enterica strain PNUSAS352061 SAMN35527823-rid18242163.denovo.41, whole genome shotgun sequence	85..900	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOIEG010000059.1 Salmonella enterica strain PNUSAS352061 SAMN35527823-rid18242163.guided.40, whole genome shotgun sequence	1709..2524	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOIEG010000037.1 Salmonella enterica strain PNUSAS352061 SAMN35527823-rid18242163.denovo.41, whole genome shotgun sequence	4251..5525	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOIEG010000059.1 Salmonella enterica strain PNUSAS352061 SAMN35527823-rid18242163.guided.40, whole genome shotgun sequence	5485..6759	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABOIEG010000037.1 Salmonella enterica strain PNUSAS352061 SAMN35527823-rid18242163.denovo.41, whole genome shotgun sequence	1427..1557	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABOIEG010000059.1 Salmonella enterica strain PNUSAS352061 SAMN35527823-rid18242163.guided.40, whole genome shotgun sequence	1052..1182		enterobacteriales	IncFIB(S)	100	643 / 643	ABOIEG010000016.1 Salmonella enterica strain PNUSAS352061 SAMN35527823-rid18242163.denovo.16, whole genome shotgun sequence	14689..15331		enterobacteriales	IncFII(S)	100	262 / 262	ABOIEG010000016.1 Salmonella enterica strain PNUSAS352061 SAMN35527823-rid18242163.denovo.16, whole genome shotgun sequence	30415..30676																																		avrA	ABOIEG010000001.1	401681..402550	99.885	870	0						
GCA_033019815.1_PDT001764600.1_genomic.fna	Salmonella_enterica	0.5212	238.979 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	17	aac(6')-Iaa,aadA1,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aph(3')-Ia,aadA17,aac(6')-Iaa,aadA1,aac(3)-IId,aadA2,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aadA17,blaTEM-1B,blaTEM-1B,lnu(F),lnu(F),cmlA1,floR,cmlA1,floR,sul2,sul3,sul3,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIEI010000001.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.01, whole genome shotgun sequence	145216..145653	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOIEI010000036.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.39, whole genome shotgun sequence	4690..5481	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOIEI010000041.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.45, whole genome shotgun sequence	5..841	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIEI010000041.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.45, whole genome shotgun sequence	841..1644	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABOIEI010000050.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.60, whole genome shotgun sequence	1027..1887	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aph(3')-Ia	100	816/816	ABOIEI010000056.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.71, whole genome shotgun sequence	136..951	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin	V00359	aadA17	98.86	792/792	ABOIEI010000059.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.75, whole genome shotgun sequence	75..866	Spectinomycin, Streptomycin	FJ460181	aac(6')-Iaa	100	438/438	ABOIEI010000073.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.34, whole genome shotgun sequence	8271..8708	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOIEI010000076.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.46, whole genome shotgun sequence	1596..2387	Spectinomycin, Streptomycin	JQ414041	aac(3)-IId	99.88	861/861	ABOIEI010000080.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.57, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA2	100	792/792	ABOIEI010000082.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.61, whole genome shotgun sequence	950..1741	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	837/837	ABOIEI010000083.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.62, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIEI010000083.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.62, whole genome shotgun sequence	69..872	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOIEI010000085.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.69, whole genome shotgun sequence	126..941	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Kanamycin	V00359	aadA17	98.86	792/792	ABOIEI010000087.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.74, whole genome shotgun sequence	46..837	Spectinomycin, Streptomycin	FJ460181	blaTEM-1B	100	861/861	ABOIEI010000051.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.64, whole genome shotgun sequence	109..969	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOIEI010000084.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.63, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	lnu(F)	100	822/822	ABOIEI010000058.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.73, whole genome shotgun sequence	73..894	Lincomycin	EU118119	lnu(F)	100	822/822	ABOIEI010000086.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.70, whole genome shotgun sequence	114..935	Lincomycin	EU118119	cmlA1	99.92	1260/1260	ABOIEI010000036.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.39, whole genome shotgun sequence	5574..6833	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOIEI010000045.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.50, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOIEI010000076.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.46, whole genome shotgun sequence	244..1503	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOIEI010000078.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.54, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOIEI010000041.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.45, whole genome shotgun sequence	1705..2520	Sulfamethoxazole	HQ840942	sul3	100	792/792	ABOIEI010000047.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.53, whole genome shotgun sequence	109..900	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOIEI010000077.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.52, whole genome shotgun sequence	2051..2842	Sulfamethoxazole	AJ459418	sul2	99.88	816/816	ABOIEI010000081.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.58, whole genome shotgun sequence	1239..2054	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOIEI010000088.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.76, whole genome shotgun sequence	50..865	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOIEI010000033.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.35, whole genome shotgun sequence	7275..8480	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOIEI010000036.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.39, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOIEI010000075.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.40, whole genome shotgun sequence	4844..6049	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOIEI010000079.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.56, whole genome shotgun sequence	283..2202	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABOIEI010000053.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.66, whole genome shotgun sequence	725..1222	Trimethoprim	AM040708	dfrA12	100	498/498	ABOIEI010000082.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.guided.61, whole genome shotgun sequence	45..542	Trimethoprim	AM040708																																																																																																																																																																																																																																														enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOIEI010000031.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.31, whole genome shotgun sequence	19808..20489	enterobacteriales	IncFIC(FII)	94	500 / 499	ABOIEI010000023.1 Salmonella enterica strain PNUSAS352040 SAMN35527821-rid18242143.denovo.23, whole genome shotgun sequence	55553..56049																																																avrA	ABOIEI010000002.1	434488..435357	99.885	870	0						
GCA_033019835.1_PDT001764601.1_genomic.fna	Salmonella_enterica	0.5213	184.09 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIEH010000001.1 Salmonella enterica strain PNUSAS352060 SAMN35527824-rid18242153.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOIEH010000027.1 Salmonella enterica strain PNUSAS352060 SAMN35527824-rid18242153.denovo.27, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIEH010000027.1 Salmonella enterica strain PNUSAS352060 SAMN35527824-rid18242153.denovo.27, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOIEH010000038.1 Salmonella enterica strain PNUSAS352060 SAMN35527824-rid18242153.denovo.43, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOIEH010000038.1 Salmonella enterica strain PNUSAS352060 SAMN35527824-rid18242153.denovo.43, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABOIEH010000060.1 Salmonella enterica strain PNUSAS352060 SAMN35527824-rid18242153.guided.37, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIEH010000060.1 Salmonella enterica strain PNUSAS352060 SAMN35527824-rid18242153.guided.37, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOIEH010000061.1 Salmonella enterica strain PNUSAS352060 SAMN35527824-rid18242153.guided.40, whole genome shotgun sequence	4729..5166	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOIEH010000064.1 Salmonella enterica strain PNUSAS352060 SAMN35527824-rid18242153.guided.51, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOIEH010000064.1 Salmonella enterica strain PNUSAS352060 SAMN35527824-rid18242153.guided.51, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABOIEH010000027.1 Salmonella enterica strain PNUSAS352060 SAMN35527824-rid18242153.denovo.27, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABOIEH010000060.1 Salmonella enterica strain PNUSAS352060 SAMN35527824-rid18242153.guided.37, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOIEH010000027.1 Salmonella enterica strain PNUSAS352060 SAMN35527824-rid18242153.denovo.27, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIEH010000059.1 Salmonella enterica strain PNUSAS352060 SAMN35527824-rid18242153.guided.33, whole genome shotgun sequence	717..1916	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOIEH010000030.1 Salmonella enterica strain PNUSAS352060 SAMN35527824-rid18242153.denovo.31, whole genome shotgun sequence	9109..9668																																																						avrA	ABOIEH010000003.1	94091..94960	99.655	870	0						
GCA_033019855.1_PDT001764598.1_genomic.fna	Salmonella_enterica	0.5231	297.107 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIEK010000003.1 Salmonella enterica strain PNUSAS352051 SAMN35527811-rid18242123.denovo.03, whole genome shotgun sequence	228414..228851	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIEK010000034.1 Salmonella enterica strain PNUSAS352051 SAMN35527811-rid18242123.guided.27, whole genome shotgun sequence	4409..4846	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033019875.1_PDT001764599.1_genomic.fna	Salmonella_enterica	0.5231	414.498 KB	5	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOIEJ010000005.1 Salmonella enterica strain PNUSAS352054 SAMN35527809-rid18242133.denovo.05, whole genome shotgun sequence	256215..256652	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOIEJ010000031.1 Salmonella enterica strain PNUSAS352054 SAMN35527809-rid18242133.guided.20, whole genome shotgun sequence	13744..14181	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIEJ010000002.1	508462..509331	99.31	870	0						
GCA_033019895.1_PDT001764597.1_genomic.fna	Salmonella_enterica	0.5214	478.496 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIEL010000001.1 Salmonella enterica strain PNUSAS352043 SAMN35527815-rid18242113.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIEL010000023.1 Salmonella enterica strain PNUSAS352043 SAMN35527815-rid18242113.guided.17, whole genome shotgun sequence	14569..15006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	ABOIEL010000002.1	553077..553946	99.54	870	0						
GCA_033019915.1_PDT001764596.1_genomic.fna	Salmonella_enterica	0.5217	321.1 KB	6	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIEN010000003.1 Salmonella enterica strain PNUSAS352042 SAMN35527812-rid18242103.denovo.03, whole genome shotgun sequence	380248..380685	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIEN010000041.1 Salmonella enterica strain PNUSAS352042 SAMN35527812-rid18242103.guided.29, whole genome shotgun sequence	2800..3237	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033019955.1_PDT001952712.1_genomic.fna	Salmonella_enterica	0.5207	392.805 KB	5	aroC_81,dnaN_69,hemD_36,hisD_12,purE_68,sucA_12,thrA_17	203	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX4	aroC	100	100	aroC_81	dnaN	100	100	dnaN_69	hemD	100	100	hemD_36	hisD	100	100	hisD_12	purE	100	100	purE_68	sucA	100	100	sucA_12	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOIEO010000003.1 Salmonella enterica strain PNUSAS394859 SAMN37946744-rid19946123.denovo.03, whole genome shotgun sequence	335164..335601	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOIEO010000032.1 Salmonella enterica strain PNUSAS394859 SAMN37946744-rid19946123.guided.19, whole genome shotgun sequence	8839..9276	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX4	98.88	712 / 712	ABOIEO010000018.1 Salmonella enterica strain PNUSAS394859 SAMN37946744-rid19946123.denovo.18, whole genome shotgun sequence	28681..29392																																																						avrA	ABOIEO010000001.1	554251..555120	99.655	870	0						
GCA_033019975.1_PDT001952685.1_genomic.fna	Salmonella_enterica	0.5198	257.719 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIES010000001.1 Salmonella enterica strain PNUSAS395027 SAMN37946694-rid19945953.denovo.01, whole genome shotgun sequence	483577..484014	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIES010000037.1 Salmonella enterica strain PNUSAS395027 SAMN37946694-rid19945953.guided.25, whole genome shotgun sequence	7448..7885	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOIES010000003.1 Salmonella enterica strain PNUSAS395027 SAMN37946694-rid19945953.denovo.03, whole genome shotgun sequence	388370..388792	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOIES010000040.1 Salmonella enterica strain PNUSAS395027 SAMN37946694-rid19945953.guided.32, whole genome shotgun sequence	2725..3147	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIES010000002.1	122297..123166	99.195	870	0						
GCA_033019995.1_PDT001952694.1_genomic.fna	Salmonella_enterica	0.5171	193.806 KB	9	aroC_488,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2058	48:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_488	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:z4,z32:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABOIEP010000033.1 Salmonella enterica strain PNUSAS394895 SAMN37945702-rid19946003.denovo.34, whole genome shotgun sequence	6573..7010	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABOIEP010000058.1 Salmonella enterica strain PNUSAS394895 SAMN37945702-rid19946003.guided.39, whole genome shotgun sequence	4359..4796	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOIEP010000015.1 Salmonella enterica strain PNUSAS394895 SAMN37945702-rid19946003.denovo.15, whole genome shotgun sequence	38587..39229																																																																	
GCA_033020015.1_PDT001952663.1_genomic.fna	Salmonella_enterica	0.5228	530.089 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(Yp)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIEU010000001.1 Salmonella enterica strain PNUSAS394909 SAMN37946179-rid19945803.denovo.01, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIEU010000031.1 Salmonella enterica strain PNUSAS394909 SAMN37946179-rid19945803.guided.21, whole genome shotgun sequence	10446..10883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	92.64	231 / 230	ABOIEU010000015.1 Salmonella enterica strain PNUSAS394909 SAMN37946179-rid19945803.denovo.15, whole genome shotgun sequence	38345..38573																																																						avrA	ABOIEU010000003.1	28833..29702	98.966	870	0						
GCA_033020035.1_PDT001952687.1_genomic.fna	Salmonella_enterica	0.5204	363.638 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIER010000001.1 Salmonella enterica strain PNUSAS394889 SAMN37945707-rid19945963.denovo.01, whole genome shotgun sequence	561490..561927	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIER010000037.1 Salmonella enterica strain PNUSAS394889 SAMN37945707-rid19945963.guided.15, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIER010000013.1	95049..95917	99.195	870	0						
GCA_033020055.1_PDT001952707.1_genomic.fna	Salmonella_enterica	0.522	394.205 KB	5	aroC_81,dnaN_283,hemD_101,hisD_12,purE_124,sucA_130,thrA_17	909	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_81	dnaN	100	100	dnaN_283	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_124	sucA	100	100	sucA_130	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIEQ010000001.1 Salmonella enterica strain PNUSAS394856 SAMN37946749-rid19946083.denovo.01, whole genome shotgun sequence	395332..395769	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIEQ010000051.1 Salmonella enterica strain PNUSAS394856 SAMN37946749-rid19946083.guided.21, whole genome shotgun sequence	8664..9101	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIEQ010000002.1	561680..562549	99.31	870	0						
GCA_033020075.1_PDT001952676.1_genomic.fna	Salmonella_enterica	0.5204	537.998 KB	4	aroC_41,dnaN_42,hemD_43,hisD_501,purE_9,sucA_12,thrA_2	1567	8:d:1,2	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	1	parC_p.T57S	2	IncFIB(pB171),IncI1-I(Alpha)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_501	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIET010000002.1 Salmonella enterica strain PNUSAS394922 SAMN37945678-rid19945383.denovo.02, whole genome shotgun sequence	508249..508686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIET010000061.1 Salmonella enterica strain PNUSAS394922 SAMN37945678-rid19945383.guided.33, whole genome shotgun sequence	1501..1938	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOIET010000020.1 Salmonella enterica strain PNUSAS394922 SAMN37945678-rid19945383.denovo.20, whole genome shotgun sequence	5742..6887	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOIET010000060.1 Salmonella enterica strain PNUSAS394922 SAMN37945678-rid19945383.guided.26, whole genome shotgun sequence	5759..6904	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOIET010000010.1 Salmonella enterica strain PNUSAS394922 SAMN37945678-rid19945383.denovo.10, whole genome shotgun sequence	38587..39229	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOIET010000021.1 Salmonella enterica strain PNUSAS394922 SAMN37945678-rid19945383.denovo.21, whole genome shotgun sequence	31043..31184																																																avrA	ABOIET010000003.1	407506..408375	99.425	870	0						
GCA_033020095.1_PDT001952662.1_genomic.fna	Salmonella_enterica	0.521	421.395 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIEV010000004.1 Salmonella enterica strain PNUSAS394866 SAMN37945710-rid19945793.denovo.04, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIEV010000029.1 Salmonella enterica strain PNUSAS394866 SAMN37945710-rid19945793.guided.17, whole genome shotgun sequence	11142..11579	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIEV010000016.1 Salmonella enterica strain PNUSAS394866 SAMN37945710-rid19945793.denovo.16, whole genome shotgun sequence	48371..49013	enterobacteriales	IncFII(S)	100	262 / 262	ABOIEV010000016.1 Salmonella enterica strain PNUSAS394866 SAMN37945710-rid19945793.denovo.16, whole genome shotgun sequence	4118..4379																																																avrA	ABOIEV010000001.1	585244..586113	99.54	870	0						
GCA_033020115.1_PDT001952661.1_genomic.fna	Salmonella_enterica	0.5199	214.181 KB	8	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pCRY)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIEW010000005.1 Salmonella enterica strain PNUSAS394867 SAMN37945705-rid19945333.denovo.05, whole genome shotgun sequence	209721..210158	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIEW010000081.1 Salmonella enterica strain PNUSAS394867 SAMN37945705-rid19945333.guided.36, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABOIEW010000039.1 Salmonella enterica strain PNUSAS394867 SAMN37945705-rid19945333.denovo.40, whole genome shotgun sequence	14445..15087	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABOIEW010000034.1 Salmonella enterica strain PNUSAS394867 SAMN37945705-rid19945333.denovo.34, whole genome shotgun sequence	1423..2015																																																avrA	ABOIEW010000020.1	39457..40326	99.425	870	0						
GCA_033020135.1_PDT001952655.1_genomic.fna	Salmonella_enterica	0.5157	272.253 KB	7	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABOIEY010000008.1 Salmonella enterica strain PNUSAS394915 SAMN37945681-rid19945753.denovo.08, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABOIEY010000047.1 Salmonella enterica strain PNUSAS394915 SAMN37945681-rid19945753.guided.22, whole genome shotgun sequence	3899..4336	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOIEY010000013.1 Salmonella enterica strain PNUSAS394915 SAMN37945681-rid19945753.denovo.13, whole genome shotgun sequence	38587..39229																																																																	
GCA_033020155.1_PDT001952657.1_genomic.fna	Salmonella_enterica	0.5216	394.09 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncL	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOIEX010000006.1 Salmonella enterica strain PNUSAS394913 SAMN37945686-rid19945763.denovo.06, whole genome shotgun sequence	255271..255708	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOIEX010000040.1 Salmonella enterica strain PNUSAS394913 SAMN37945686-rid19945763.guided.14, whole genome shotgun sequence	21318..21755	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncL	97.85	651 / 661	ABOIEX010000013.1 Salmonella enterica strain PNUSAS394913 SAMN37945686-rid19945763.denovo.13, whole genome shotgun sequence	51915..52565																																																						avrA	ABOIEX010000002.1	497480..498348	99.425	870	0						
GCA_033020175.1_PDT001952653.1_genomic.fna	Salmonella_enterica	0.5197	342.817 KB	5	aroC_41,dnaN_42,hemD_43,hisD_501,purE_9,sucA_12,thrA_2	1567	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncX5,pXuzhou21	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_501	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIEZ010000002.1 Salmonella enterica strain PNUSAS394928 SAMN37945675-rid19945743.denovo.02, whole genome shotgun sequence	494786..495223	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIEZ010000045.1 Salmonella enterica strain PNUSAS394928 SAMN37945675-rid19945743.guided.21, whole genome shotgun sequence	11714..12151	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOIEZ010000009.1 Salmonella enterica strain PNUSAS394928 SAMN37945675-rid19945743.denovo.09, whole genome shotgun sequence	38587..39229	enterobacteriales	IncX5	100	906 / 906	ABOIEZ010000023.1 Salmonella enterica strain PNUSAS394928 SAMN37945675-rid19945743.denovo.24, whole genome shotgun sequence	29922..30827		enterobacteriales	pXuzhou21	98.33	720 / 720	ABOIEZ010000021.1 Salmonella enterica strain PNUSAS394928 SAMN37945675-rid19945743.denovo.22, whole genome shotgun sequence	24199..24918																																									avrA	ABOIEZ010000004.1	407504..408373	99.425	870	0						
GCA_033020215.1_PDT001952636.1_genomic.fna	Salmonella_enterica	0.5207	275.834 KB	7	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOIFC010000002.1 Salmonella enterica strain PNUSAS394869 SAMN37945700-rid19945213.denovo.02, whole genome shotgun sequence	239427..239864	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOIFC010000050.1 Salmonella enterica strain PNUSAS394869 SAMN37945700-rid19945213.guided.21, whole genome shotgun sequence	11739..12176	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOIFC010000035.1 Salmonella enterica strain PNUSAS394869 SAMN37945700-rid19945213.denovo.38, whole genome shotgun sequence	4530..5172	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOIFC010000030.1 Salmonella enterica strain PNUSAS394869 SAMN37945700-rid19945213.denovo.33, whole genome shotgun sequence	10978..11204																																																											
GCA_033020235.1_PDT001952647.1_genomic.fna	Salmonella_enterica	0.521	510.017 KB	4	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIFB010000001.1 Salmonella enterica strain PNUSAS394975 SAMN37946205-rid19945713.denovo.01, whole genome shotgun sequence	830789..831226	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIFB010000029.1 Salmonella enterica strain PNUSAS394975 SAMN37946205-rid19945713.guided.21, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	94.81	154 / 154	ABOIFB010000019.1 Salmonella enterica strain PNUSAS394975 SAMN37946205-rid19945713.denovo.22, whole genome shotgun sequence	792..945																																																						avrA	ABOIFB010000002.1	542024..542893	99.425	870	0						
GCA_033020255.1_PDT001952630.1_genomic.fna	Salmonella_enterica	0.5202	331.805 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIFD010000001.1 Salmonella enterica strain PNUSAS394871 SAMN37945697-rid19945623.denovo.01, whole genome shotgun sequence	512666..513103	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIFD010000030.1 Salmonella enterica strain PNUSAS394871 SAMN37945697-rid19945623.guided.19, whole genome shotgun sequence	19560..19997	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOIFD010000016.1 Salmonella enterica strain PNUSAS394871 SAMN37945697-rid19945623.denovo.16, whole genome shotgun sequence	3429..4071	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOIFD010000016.1 Salmonella enterica strain PNUSAS394871 SAMN37945697-rid19945623.denovo.16, whole genome shotgun sequence	30186..30412																																																avrA	ABOIFD010000011.1	150682..151552	99.196	871	0						
GCA_033020275.1_PDT001952622.1_genomic.fna	Salmonella_enterica	0.5209	226.005 KB	9	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIFE010000006.1 Salmonella enterica strain PNUSAS394910 SAMN37945679-rid19945593.denovo.06, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIFE010000049.1 Salmonella enterica strain PNUSAS394910 SAMN37945679-rid19945593.guided.29, whole genome shotgun sequence	15263..15700	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOIFE010000024.1 Salmonella enterica strain PNUSAS394910 SAMN37945679-rid19945593.denovo.24, whole genome shotgun sequence	34958..35491																																																						avrA	ABOIFE010000009.1	188178..189047	99.54	870	0						
GCA_033020295.1_PDT001952609.1_genomic.fna	Salmonella_enterica	0.5207	240.002 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1A,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIFF010000001.1 Salmonella enterica strain PNUSAS394883 SAMN37944456-rid19945063.denovo.01, whole genome shotgun sequence	145567..146004	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIFF010000043.1 Salmonella enterica strain PNUSAS394883 SAMN37944456-rid19945063.denovo.48, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIFF010000043.1 Salmonella enterica strain PNUSAS394883 SAMN37944456-rid19945063.denovo.48, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOIFF010000058.1 Salmonella enterica strain PNUSAS394883 SAMN37944456-rid19945063.guided.26, whole genome shotgun sequence	10578..11015	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIFF010000062.1 Salmonella enterica strain PNUSAS394883 SAMN37944456-rid19945063.guided.47, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIFF010000062.1 Salmonella enterica strain PNUSAS394883 SAMN37944456-rid19945063.guided.47, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOIFF010000047.1 Salmonella enterica strain PNUSAS394883 SAMN37944456-rid19945063.denovo.52, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1A	100	861/861	ABOIFF010000063.1 Salmonella enterica strain PNUSAS394883 SAMN37944456-rid19945063.guided.55, whole genome shotgun sequence	24..884	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1B	100	861/861	ABOIFF010000064.1 Salmonella enterica strain PNUSAS394883 SAMN37944456-rid19945063.guided.56, whole genome shotgun sequence	24..884	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOIFF010000043.1 Salmonella enterica strain PNUSAS394883 SAMN37944456-rid19945063.denovo.48, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOIFF010000062.1 Salmonella enterica strain PNUSAS394883 SAMN37944456-rid19945063.guided.47, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOIFF010000037.1 Salmonella enterica strain PNUSAS394883 SAMN37944456-rid19945063.denovo.38, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOIFF010000059.1 Salmonella enterica strain PNUSAS394883 SAMN37944456-rid19945063.guided.39, whole genome shotgun sequence	5284..6489	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOIFF010000018.1 Salmonella enterica strain PNUSAS394883 SAMN37944456-rid19945063.denovo.18, whole genome shotgun sequence	3326..3467																																																						avrA	ABOIFF010000002.1	434659..435528	99.885	870	0						
GCA_033020655.1_PDT001764565.1_genomic.fna	Salmonella_enterica	0.5188	235.115 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	8	aac(6')-Iaa,aadA4,aph(6)-Id,aph(3')-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Id,aph(3'')-Ib,aadA4,sul1,sul2,sul2,sul1,tet(A),tet(A)	1	parC_p.T57S	3	IncHI2,IncHI2A,IncQ1,IncQ1	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIFX010000001.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.denovo.01, whole genome shotgun sequence	727905..728342	Amikacin, Tobramycin	NC_003197	aadA4	99.62	789/789	ABOIFX010000021.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.denovo.21, whole genome shotgun sequence	3017..3805	Spectinomycin, Streptomycin	Z50802	aph(6)-Id	100	837/837	ABOIFX010000029.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.denovo.32, whole genome shotgun sequence	10495..11331	Streptomycin	M28829	aph(3')-Id	99.51	817/816	ABOIFX010000029.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.denovo.32, whole genome shotgun sequence	1274..2089	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	Z48231	aph(3'')-Ib	100	780/804	ABOIFX010000029.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.denovo.32, whole genome shotgun sequence	11331..12110	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOIFX010000043.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.guided.23, whole genome shotgun sequence	15300..15737	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIFX010000046.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.guided.33, whole genome shotgun sequence	8375..9211	Streptomycin	M28829	aph(3')-Id	99.51	817/816	ABOIFX010000046.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.guided.33, whole genome shotgun sequence	5507..6322	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	Z48231	aph(3'')-Ib	100	804/804	ABOIFX010000046.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.guided.33, whole genome shotgun sequence	7572..8375	Streptomycin	AF321551	aadA4	99.62	789/789	ABOIFX010000047.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.guided.34, whole genome shotgun sequence	2217..3005	Spectinomycin, Streptomycin	Z50802	sul1	100	840/840	ABOIFX010000021.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.denovo.21, whole genome shotgun sequence	1632..2471	Sulfamethoxazole	U12338	sul2	100	816/816	ABOIFX010000029.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.denovo.32, whole genome shotgun sequence	85..900	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOIFX010000046.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.guided.33, whole genome shotgun sequence	6696..7511	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOIFX010000047.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.guided.34, whole genome shotgun sequence	3551..4390	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOIFX010000029.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.denovo.32, whole genome shotgun sequence	7960..9234	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOIFX010000046.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.guided.33, whole genome shotgun sequence	10472..11746	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOIFX010000020.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.denovo.20, whole genome shotgun sequence	46578..46904	enterobacteriales	IncHI2A	100	630 / 630	ABOIFX010000020.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.denovo.20, whole genome shotgun sequence	61770..62399		enterobacteriales	IncQ1	100	796 / 796	ABOIFX010000029.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.denovo.32, whole genome shotgun sequence	3438..4233		enterobacteriales	IncQ1	100	796 / 796	ABOIFX010000046.1 Salmonella enterica strain PNUSAS352037 SAMN35525685-rid18241793.guided.33, whole genome shotgun sequence	3363..4158																																		avrA	ABOIFX010000002.1	394821..395690	99.195	870	0						
GCA_033020675.1_PDT001764560.1_genomic.fna	Salmonella_enterica	0.5226	379.904 KB	4	aroC_543,dnaN_69,hemD_101,hisD_12,purE_370,sucA_130,thrA_347	2553	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_543	dnaN	100	100	dnaN_69	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_370	sucA	100	100	sucA_130	thrA	100	100	thrA_347	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOIFY010000001.1 Salmonella enterica strain PNUSAS351999 SAMN35525482-rid18241743.denovo.01, whole genome shotgun sequence	516217..516654	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOIFY010000030.1 Salmonella enterica strain PNUSAS351999 SAMN35525482-rid18241743.guided.25, whole genome shotgun sequence	3993..4430	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIFY010000002.1	514142..515011	99.31	870	0						
GCA_033020695.1_PDT001764559.1_genomic.fna	Salmonella_enterica	0.52	392.02 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOIFZ010000001.1 Salmonella enterica strain PNUSAS352011 SAMN35525483-rid18241733.denovo.01, whole genome shotgun sequence	503575..504012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOIFZ010000028.1 Salmonella enterica strain PNUSAS352011 SAMN35525483-rid18241733.guided.22, whole genome shotgun sequence	2134..2571	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIFZ010000002.1	556191..557059	99.425	870	0						
GCA_033020715.1_PDT001952672.1_genomic.fna	Salmonella_enterica	0.5207	556.416 KB	4	aroC_23,dnaN_9,hemD_15,hisD_12,purE_17,sucA_20,thrA_12	52	8:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_23	dnaN	100	100	dnaN_9	hemD	100	100	hemD_15	hisD	100	100	hisD_12	purE	100	100	purE_17	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Blockley		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOIGK010000003.1 Salmonella enterica strain PNUSAS395020 SAMN37946685-rid19945863.denovo.03, whole genome shotgun sequence	514582..515019	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOIGK010000020.1 Salmonella enterica strain PNUSAS395020 SAMN37946685-rid19945863.guided.15, whole genome shotgun sequence	14404..14841	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIGK010000002.1	568767..569636	99.425	870	0						
GCA_033020735.1_PDT001952718.1_genomic.fna	Salmonella_enterica	0.521	685.822 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(p14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOIGC010000001.1 Salmonella enterica strain PNUSAS394885 SAMN37944454-rid19946163.denovo.01, whole genome shotgun sequence	498046..498483	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOIGC010000021.1 Salmonella enterica strain PNUSAS394885 SAMN37944454-rid19946163.guided.17, whole genome shotgun sequence	10611..11048	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOIGC010000011.1 Salmonella enterica strain PNUSAS394885 SAMN37944454-rid19946163.denovo.11, whole genome shotgun sequence	17040..17682	enterobacteriales	IncFII(p14)	92.02	263 / 262	ABOIGC010000011.1 Salmonella enterica strain PNUSAS394885 SAMN37944454-rid19946163.denovo.11, whole genome shotgun sequence	33599..33857																																																avrA	ABOIGC010000003.1	498626..499494	99.425	870	0						
GCA_033020745.1_PDT001952695.1_genomic.fna	Salmonella_enterica	0.5211	480.935 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIGD010000001.1 Salmonella enterica strain PNUSAS395024 SAMN37946689-rid19946013.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIGD010000023.1 Salmonella enterica strain PNUSAS395024 SAMN37946689-rid19946013.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIGD010000014.1 Salmonella enterica strain PNUSAS395024 SAMN37946689-rid19946013.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOIGD010000014.1 Salmonella enterica strain PNUSAS395024 SAMN37946689-rid19946013.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOIGD010000002.1	553642..554511	99.54	870	0						
GCA_033020775.1_PDT001764558.1_genomic.fna	Salmonella_enterica	0.5213	406.877 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIGA010000001.1 Salmonella enterica strain PNUSAS352006 SAMN35525480-rid18241723.denovo.01, whole genome shotgun sequence	293249..293686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIGA010000028.1 Salmonella enterica strain PNUSAS352006 SAMN35525480-rid18241723.guided.22, whole genome shotgun sequence	4063..4500	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIGA010000019.1 Salmonella enterica strain PNUSAS352006 SAMN35525480-rid18241723.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOIGA010000020.1 Salmonella enterica strain PNUSAS352006 SAMN35525480-rid18241723.denovo.20, whole genome shotgun sequence	3406..3667																																																avrA	ABOIGA010000002.1	553176..554045	99.54	870	0						
GCA_033020795.1_PDT001952689.1_genomic.fna	Salmonella_enterica	0.5216	532.149 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOIGE010000010.1 Salmonella enterica strain PNUSAS394977 SAMN37946167-rid19945973.denovo.10, whole genome shotgun sequence	70822..71259	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOIGE010000029.1 Salmonella enterica strain PNUSAS394977 SAMN37946167-rid19945973.guided.15, whole genome shotgun sequence	16407..16844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIGE010000002.1	138357..139226	98.966	870	0						
GCA_033020815.1_PDT001952719.1_genomic.fna	Salmonella_enterica	0.5208	490.031 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIGB010000001.1 Salmonella enterica strain PNUSAS395073 SAMN37946762-rid19946173.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIGB010000025.1 Salmonella enterica strain PNUSAS395073 SAMN37946762-rid19946173.guided.13, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIGB010000017.1 Salmonella enterica strain PNUSAS395073 SAMN37946762-rid19946173.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOIGB010000014.1 Salmonella enterica strain PNUSAS395073 SAMN37946762-rid19946173.denovo.15, whole genome shotgun sequence	4078..4339																																																avrA	ABOIGB010000002.1	552977..553846	99.54	870	0						
GCA_033020855.1_PDT001952681.1_genomic.fna	Salmonella_enterica	0.5191	324.584 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		6	ColpVC,IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI2(Delta),IncP1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIGH010000003.1 Salmonella enterica strain PNUSAS395021 SAMN37946688-rid19945403.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIGH010000049.1 Salmonella enterica strain PNUSAS395021 SAMN37946688-rid19945403.guided.20, whole genome shotgun sequence	14362..14799	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColpVC	98.96	193 / 193	ABOIGH010000035.1 Salmonella enterica strain PNUSAS395021 SAMN37946688-rid19945403.denovo.38, whole genome shotgun sequence	194..386	enterobacteriales	IncFIB(S)	100	643 / 643	ABOIGH010000016.1 Salmonella enterica strain PNUSAS395021 SAMN37946688-rid19945403.denovo.16, whole genome shotgun sequence	44653..45295		enterobacteriales	IncFII(S)	100	262 / 262	ABOIGH010000016.1 Salmonella enterica strain PNUSAS395021 SAMN37946688-rid19945403.denovo.16, whole genome shotgun sequence	60380..60641		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOIGH010000018.1 Salmonella enterica strain PNUSAS395021 SAMN37946688-rid19945403.denovo.18, whole genome shotgun sequence	68961..69102		enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABOIGH010000021.1 Salmonella enterica strain PNUSAS395021 SAMN37946688-rid19945403.denovo.22, whole genome shotgun sequence	26894..27215		enterobacteriales	IncP1	98.52	745 / 745	ABOIGH010000022.1 Salmonella enterica strain PNUSAS395021 SAMN37946688-rid19945403.denovo.23, whole genome shotgun sequence	42057..42801																				avrA	ABOIGH010000001.1	451734..452602	100	869	0						
GCA_033020875.1_PDT001952693.1_genomic.fna	Salmonella_enterica	0.5225	228.069 KB	6	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIGF010000001.1 Salmonella enterica strain PNUSAS395029 SAMN37946683-rid19945443.denovo.01, whole genome shotgun sequence	493796..494233	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIGF010000037.1 Salmonella enterica strain PNUSAS395029 SAMN37946683-rid19945443.guided.22, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033020895.1_PDT001952680.1_genomic.fna	Salmonella_enterica	0.5198	389.813 KB	5	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIGI010000001.1 Salmonella enterica strain PNUSAS395031 SAMN37946682-rid19945913.denovo.01, whole genome shotgun sequence	110416..110853	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIGI010000036.1 Salmonella enterica strain PNUSAS395031 SAMN37946682-rid19945913.guided.14, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIGI010000004.1	94209..95078	98.966	870	0						
GCA_033020915.1_PDT001952665.1_genomic.fna	Salmonella_enterica	0.5213	480.935 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIGM010000006.1 Salmonella enterica strain PNUSAS394865 SAMN37945694-rid19945823.denovo.06, whole genome shotgun sequence	56448..56885	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIGM010000028.1 Salmonella enterica strain PNUSAS394865 SAMN37945694-rid19945823.guided.20, whole genome shotgun sequence	9224..9661	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIGM010000016.1 Salmonella enterica strain PNUSAS394865 SAMN37945694-rid19945823.denovo.16, whole genome shotgun sequence	50251..50893	enterobacteriales	IncFII(S)	100	262 / 262	ABOIGM010000016.1 Salmonella enterica strain PNUSAS394865 SAMN37945694-rid19945823.denovo.16, whole genome shotgun sequence	5998..6259																																																avrA	ABOIGM010000001.1	553077..553946	99.54	870	0						
GCA_033020935.1_PDT001952674.1_genomic.fna	Salmonella_enterica	0.5215	394.09 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOIGJ010000006.1 Salmonella enterica strain PNUSAS394898 SAMN37944465-rid19945873.denovo.06, whole genome shotgun sequence	255933..256370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOIGJ010000032.1 Salmonella enterica strain PNUSAS394898 SAMN37944465-rid19945873.guided.18, whole genome shotgun sequence	12993..13430	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIGJ010000002.1	509550..510418	99.425	870	0						
GCA_033020955.1_PDT001952659.1_genomic.fna	Salmonella_enterica	0.5218	292.652 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIGL010000001.1 Salmonella enterica strain PNUSAS394923 SAMN37946182-rid19945773.denovo.01, whole genome shotgun sequence	170660..171097	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIGL010000037.1 Salmonella enterica strain PNUSAS394923 SAMN37946182-rid19945773.guided.25, whole genome shotgun sequence	262..699	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIGL010000002.1	94213..95082	99.31	870	0						
GCA_033020975.1_PDT001952632.1_genomic.fna	Salmonella_enterica	0.5213	432.749 KB	5	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOIGO010000001.1 Salmonella enterica strain PNUSAS394882 SAMN37945690-rid19945633.denovo.01, whole genome shotgun sequence	385786..386223	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOIGO010000023.1 Salmonella enterica strain PNUSAS394882 SAMN37945690-rid19945633.guided.17, whole genome shotgun sequence	3385..3822	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIGO010000002.1	149711..150580	99.425	870	0						
GCA_033021015.1_PDT001952625.1_genomic.fna	Salmonella_enterica	0.5227	263.451 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIGR010000001.1 Salmonella enterica strain PNUSAS394918 SAMN37945676-rid19945603.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIGR010000035.1 Salmonella enterica strain PNUSAS394918 SAMN37945676-rid19945603.guided.24, whole genome shotgun sequence	22928..23365	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIGR010000003.1	39430..40299	99.655	870	0						
GCA_033021035.1_PDT001764562.1_genomic.fna	Salmonella_enterica	0.5216	201.537 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	3	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(4)-Ia,aac(3)-IV,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIGP010000001.1 Salmonella enterica strain PNUSAS352008 SAMN35525481-rid18241763.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	99.9	1026/1026	ABOIGP010000042.1 Salmonella enterica strain PNUSAS352008 SAMN35525481-rid18241763.denovo.44, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOIGP010000042.1 Salmonella enterica strain PNUSAS352008 SAMN35525481-rid18241763.denovo.44, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aph(4)-Ia	99.9	1026/1026	ABOIGP010000057.1 Salmonella enterica strain PNUSAS352008 SAMN35525481-rid18241763.guided.41, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOIGP010000057.1 Salmonella enterica strain PNUSAS352008 SAMN35525481-rid18241763.guided.41, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	aph(4)-Ia	99.9	1026/1026	ABOIGP010000058.1 Salmonella enterica strain PNUSAS352008 SAMN35525481-rid18241763.guided.42, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	99.87	777/777	ABOIGP010000058.1 Salmonella enterica strain PNUSAS352008 SAMN35525481-rid18241763.guided.42, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOIGP010000061.1 Salmonella enterica strain PNUSAS352008 SAMN35525481-rid18241763.guided.53, whole genome shotgun sequence	510..947	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOIGP010000034.1 Salmonella enterica strain PNUSAS352008 SAMN35525481-rid18241763.denovo.34, whole genome shotgun sequence	9109..9668																																																						avrA	ABOIGP010000005.1	95321..96190	99.655	870	0						
GCA_033021055.1_PDT001952637.1_genomic.fna	Salmonella_enterica	0.5187	293.007 KB	7	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIGN010000009.1 Salmonella enterica strain PNUSAS394877 SAMN37945695-rid19945663.denovo.09, whole genome shotgun sequence	80817..81254	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIGN010000080.1 Salmonella enterica strain PNUSAS394877 SAMN37945695-rid19945663.guided.37, whole genome shotgun sequence	2005..2442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOIGN010000029.1 Salmonella enterica strain PNUSAS394877 SAMN37945695-rid19945663.denovo.30, whole genome shotgun sequence	11451..12093																																																						avrA	ABOIGN010000003.1	140123..140992	99.425	870	0						
GCA_033021075.1_PDT001764561.1_genomic.fna	Salmonella_enterica	0.5214	175.672 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIGS010000001.1 Salmonella enterica strain PNUSAS352009 SAMN35525484-rid18241753.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIGS010000064.1 Salmonella enterica strain PNUSAS352009 SAMN35525484-rid18241753.guided.46, whole genome shotgun sequence	322..759	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOIGS010000028.1 Salmonella enterica strain PNUSAS352009 SAMN35525484-rid18241753.denovo.28, whole genome shotgun sequence	44706..45348	enterobacteriales	IncFII(S)	100	262 / 262	ABOIGS010000028.1 Salmonella enterica strain PNUSAS352009 SAMN35525484-rid18241753.denovo.28, whole genome shotgun sequence	29360..29621		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOIGS010000022.1 Salmonella enterica strain PNUSAS352009 SAMN35525484-rid18241753.denovo.22, whole genome shotgun sequence	71832..71973																																									avrA	ABOIGS010000003.1	174651..175519	100	869	0						
GCA_033021095.1_PDT001764556.1_genomic.fna	Salmonella_enterica	0.5212	337.574 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIGU010000001.1 Salmonella enterica strain PNUSAS351969 SAMN35525461-rid18241703.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIGU010000035.1 Salmonella enterica strain PNUSAS351969 SAMN35525461-rid18241703.guided.13, whole genome shotgun sequence	5345..5782	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOIGU010000014.1 Salmonella enterica strain PNUSAS351969 SAMN35525461-rid18241703.denovo.15, whole genome shotgun sequence	68979..70124	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOIGU010000038.1 Salmonella enterica strain PNUSAS351969 SAMN35525461-rid18241703.guided.22, whole genome shotgun sequence	20433..21578	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOIGU010000014.1 Salmonella enterica strain PNUSAS351969 SAMN35525461-rid18241703.denovo.15, whole genome shotgun sequence	74522..74663	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOIGU010000038.1 Salmonella enterica strain PNUSAS351969 SAMN35525461-rid18241703.guided.22, whole genome shotgun sequence	15894..16035																																																avrA	ABOIGU010000002.1	150006..150875	99.655	870	0						
GCA_033021115.1_PDT001764553.1_genomic.fna	Salmonella_enterica	0.5208	209.374 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIGX010000001.1 Salmonella enterica strain PNUSAS352001 SAMN35525449-rid18241673.denovo.01, whole genome shotgun sequence	462162..462599	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIGX010000046.1 Salmonella enterica strain PNUSAS352001 SAMN35525449-rid18241673.guided.26, whole genome shotgun sequence	9027..9464	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIGX010000003.1	153272..154141	99.195	870	0						
GCA_033021135.1_PDT001764554.1_genomic.fna	Salmonella_enterica	0.5225	762.315 KB	2	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIGW010000001.1 Salmonella enterica strain PNUSAS351983 SAMN35525464-rid18241683.denovo.01, whole genome shotgun sequence	640513..640950	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOIGW010000020.1 Salmonella enterica strain PNUSAS351983 SAMN35525464-rid18241683.guided.13, whole genome shotgun sequence	275..712	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABOIGW010000011.1 Salmonella enterica strain PNUSAS351983 SAMN35525464-rid18241683.denovo.14, whole genome shotgun sequence	3981..4111																																																						avrA	ABOIGW010000003.1	553822..554691	99.77	870	0						
GCA_033021155.1_PDT001764557.1_genomic.fna	Salmonella_enterica	0.5229	517.393 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOIGV010000001.1 Salmonella enterica strain PNUSAS351986 SAMN35525459-rid18241713.denovo.01, whole genome shotgun sequence	666961..667398	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOIGV010000025.1 Salmonella enterica strain PNUSAS351986 SAMN35525459-rid18241713.guided.13, whole genome shotgun sequence	13996..14433	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIGV010000003.1	557060..557929	99.31	870	0						
GCA_033021175.1_PDT001764555.1_genomic.fna	Salmonella_enterica	0.5218	207.445 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3')-Ia,qnrB19,qnrB19,tet(A),tet(A)	0		2	Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIGT010000002.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.denovo.02, whole genome shotgun sequence	145240..145677	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIGT010000033.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.denovo.33, whole genome shotgun sequence	12522..13358	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOIGT010000033.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.denovo.33, whole genome shotgun sequence	13358..14160	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOIGT010000033.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.denovo.33, whole genome shotgun sequence	13358..14161	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOIGT010000033.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.denovo.33, whole genome shotgun sequence	13358..14161	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOIGT010000033.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.denovo.33, whole genome shotgun sequence	13358..14161	Streptomycin	AF321550	aph(3')-Ia	100	816/816	ABOIGT010000045.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.denovo.53, whole genome shotgun sequence	367..1182	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aac(6')-Iaa	100	438/438	ABOIGT010000055.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.guided.39, whole genome shotgun sequence	2601..3038	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIGT010000059.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.guided.46, whole genome shotgun sequence	1414..2250	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOIGT010000059.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.guided.46, whole genome shotgun sequence	612..1414	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOIGT010000059.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.guided.46, whole genome shotgun sequence	611..1414	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOIGT010000059.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.guided.46, whole genome shotgun sequence	611..1414	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOIGT010000059.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.guided.46, whole genome shotgun sequence	611..1414	Streptomycin	AF321550	aph(3')-Ia	100	816/816	ABOIGT010000062.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.guided.52, whole genome shotgun sequence	107..922	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	qnrB19	100	645/645	ABOIGT010000043.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.denovo.49, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOIGT010000061.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.guided.50, whole genome shotgun sequence	606..1250	Ciprofloxacin	EU432277	tet(A)	100	1200/1200	ABOIGT010000033.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.denovo.33, whole genome shotgun sequence	5630..6829	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIGT010000060.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.guided.48, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOIGT010000042.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.denovo.47, whole genome shotgun sequence	2720..2850	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOIGT010000043.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.denovo.49, whole genome shotgun sequence	1522..1652		enterobacteriales	Col440I	90.2	102 / 114	ABOIGT010000061.1 Salmonella enterica strain PNUSAS351961 SAMN35525456-rid18241693.guided.50, whole genome shotgun sequence	1..102																																									avrA	ABOIGT010000004.1	174589..175457	99.77	870	0						
GCA_033021195.1_PDT001764551.1_genomic.fna	Salmonella_enterica	0.5216	282.835 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIGZ010000001.1 Salmonella enterica strain PNUSAS351976 SAMN35525453-rid18241653.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIGZ010000032.1 Salmonella enterica strain PNUSAS351976 SAMN35525453-rid18241653.denovo.37, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIGZ010000032.1 Salmonella enterica strain PNUSAS351976 SAMN35525453-rid18241653.denovo.37, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOIGZ010000042.1 Salmonella enterica strain PNUSAS351976 SAMN35525453-rid18241653.guided.29, whole genome shotgun sequence	4774..5211	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIGZ010000044.1 Salmonella enterica strain PNUSAS351976 SAMN35525453-rid18241653.guided.36, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIGZ010000044.1 Salmonella enterica strain PNUSAS351976 SAMN35525453-rid18241653.guided.36, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOIGZ010000033.1 Salmonella enterica strain PNUSAS351976 SAMN35525453-rid18241653.denovo.39, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOIGZ010000045.1 Salmonella enterica strain PNUSAS351976 SAMN35525453-rid18241653.guided.38, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOIGZ010000032.1 Salmonella enterica strain PNUSAS351976 SAMN35525453-rid18241653.denovo.37, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOIGZ010000044.1 Salmonella enterica strain PNUSAS351976 SAMN35525453-rid18241653.guided.36, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOIGZ010000026.1 Salmonella enterica strain PNUSAS351976 SAMN35525453-rid18241653.denovo.26, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOIGZ010000041.1 Salmonella enterica strain PNUSAS351976 SAMN35525453-rid18241653.guided.28, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABOIGZ010000002.1	540570..541439	99.885	870	0						
GCA_033021215.1_PDT001764552.1_genomic.fna	Salmonella_enterica	0.5223	407.646 KB	4	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOIGY010000001.1 Salmonella enterica strain PNUSAS351959 SAMN35525463-rid18241663.denovo.01, whole genome shotgun sequence	307821..308258	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOIGY010000022.1 Salmonella enterica strain PNUSAS351959 SAMN35525463-rid18241663.guided.17, whole genome shotgun sequence	1699..2136	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033021235.1_PDT001764550.1_genomic.fna	Salmonella_enterica	0.5206	412.664 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIHA010000001.1 Salmonella enterica strain PNUSAS351975 SAMN35525452-rid18241643.denovo.01, whole genome shotgun sequence	642564..643001	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIHA010000020.1 Salmonella enterica strain PNUSAS351975 SAMN35525452-rid18241643.guided.16, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033021255.1_PDT001764549.1_genomic.fna	Salmonella_enterica	0.5227	441.574 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIHC010000001.1 Salmonella enterica strain PNUSAS351998 SAMN35525450-rid18241633.denovo.01, whole genome shotgun sequence	454806..455243	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIHC010000029.1 Salmonella enterica strain PNUSAS351998 SAMN35525450-rid18241633.guided.19, whole genome shotgun sequence	5879..6316	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIHC010000002.1	158088..158957	98.966	870	0						
GCA_033021275.1_PDT001764548.1_genomic.fna	Salmonella_enterica	0.5224	508.398 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIHB010000001.1 Salmonella enterica strain PNUSAS352005 SAMN35525451-rid18241623.denovo.01, whole genome shotgun sequence	790295..790732	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIHB010000027.1 Salmonella enterica strain PNUSAS352005 SAMN35525451-rid18241623.guided.18, whole genome shotgun sequence	8102..8539	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIHB010000002.1	146983..147852	98.966	870	0						
GCA_033021315.1_PDT001952715.1_genomic.fna	Salmonella_enterica	0.5213	477.105 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIHE010000001.1 Salmonella enterica strain PNUSAS395016 SAMN37946692-rid19946143.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIHE010000023.1 Salmonella enterica strain PNUSAS395016 SAMN37946692-rid19946143.guided.16, whole genome shotgun sequence	24488..24925	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIHE010000008.1	174992..175861	99.54	870	0						
GCA_033021335.1_PDT001952716.1_genomic.fna	Salmonella_enterica	0.5232	320.286 KB	5	aroC_2,dnaN_2,hemD_43,hisD_7,purE_162,sucA_9,thrA_17	2026	7:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_43	hisD	100	100	hisD_7	purE	100	100	purE_162	sucA	100	100	sucA_9	thrA	100	100	thrA_17	7	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Irumu		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOIHD010000001.1 Salmonella enterica strain PNUSAS394862 SAMN37946746-rid19945523.denovo.01, whole genome shotgun sequence	454304..454741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.15	353/438	ABOIHD010000032.1 Salmonella enterica strain PNUSAS394862 SAMN37946746-rid19945523.guided.27, whole genome shotgun sequence	1..353	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIHD010000009.1	148013..148882	99.77	870	0						
GCA_033021355.1_PDT001952666.1_genomic.fna	Salmonella_enterica	0.5213	558.754 KB	3	aroC_11,dnaN_10,hemD_25,hisD_42,purE_40,sucA_13,thrA_4	411	4:e,h:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOIHI010000001.1 Salmonella enterica strain PNUSAS394892 SAMN37944468-rid19945343.denovo.01, whole genome shotgun sequence	153417..153854	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOIHI010000027.1 Salmonella enterica strain PNUSAS394892 SAMN37944468-rid19945343.guided.19, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIHI010000003.1	94151..95020	99.54	870	0						
GCA_033021375.1_PDT001952664.1_genomic.fna	Salmonella_enterica	0.5212	282.619 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aadA1,aac(6')-Iaa,aadA2,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(M),tet(B),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIHJ010000001.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOIHJ010000032.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.32, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOIHJ010000032.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.32, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOIHJ010000040.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.44, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIHJ010000040.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.44, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aadA1	100	792/792	ABOIHJ010000056.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.guided.37, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABOIHJ010000057.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.guided.38, whole genome shotgun sequence	1256..1693	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOIHJ010000059.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.guided.47, whole genome shotgun sequence	371..1162	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	837/837	ABOIHJ010000063.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.guided.57, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIHJ010000063.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.guided.57, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOIHJ010000047.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.54, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOIHJ010000064.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.guided.58, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOIHJ010000032.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.32, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOIHJ010000041.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.45, whole genome shotgun sequence	568..1781	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOIHJ010000056.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.guided.37, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOIHJ010000059.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.guided.47, whole genome shotgun sequence	1424..2683	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOIHJ010000061.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.guided.52, whole genome shotgun sequence	622..1835	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOIHJ010000040.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.44, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOIHJ010000065.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.guided.60, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOIHJ010000066.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.guided.61, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABOIHJ010000067.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.guided.62, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOIHJ010000068.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.guided.63, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOIHJ010000031.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.31, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOIHJ010000032.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.32, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABOIHJ010000056.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.guided.37, whole genome shotgun sequence	4527..6446	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOIHJ010000062.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.guided.56, whole genome shotgun sequence	151..1356	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABOIHJ010000032.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.32, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABOIHJ010000058.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.guided.40, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																								enterobacteriales	Col156	94.81	154 / 154	ABOIHJ010000036.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.39, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABOIHJ010000044.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.50, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABOIHJ010000048.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.55, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOIHJ010000028.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.28, whole genome shotgun sequence	19811..20492		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOIHJ010000024.1 Salmonella enterica strain PNUSAS391204 SAMN37946185-rid19945813.denovo.24, whole genome shotgun sequence	34897..35393																											avrA	ABOIHJ010000002.1	508765..509634	99.885	870	0						
GCA_033021415.1_PDT001952675.1_genomic.fna	Salmonella_enterica	0.5207	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIHH010000001.1 Salmonella enterica strain PNUSAS395030 SAMN37946693-rid19945883.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIHH010000028.1 Salmonella enterica strain PNUSAS395030 SAMN37946693-rid19945883.guided.16, whole genome shotgun sequence	31465..31902	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIHH010000016.1 Salmonella enterica strain PNUSAS395030 SAMN37946693-rid19945883.denovo.17, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOIHH010000016.1 Salmonella enterica strain PNUSAS395030 SAMN37946693-rid19945883.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABOIHH010000002.1	542930..543799	99.54	870	0						
GCA_033021455.1_PDT001952686.1_genomic.fna	Salmonella_enterica	0.5212	402.499 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIHF010000001.1 Salmonella enterica strain PNUSAS394917 SAMN37945680-rid19945413.denovo.01, whole genome shotgun sequence	149353..149790	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIHF010000027.1 Salmonella enterica strain PNUSAS394917 SAMN37945680-rid19945413.guided.22, whole genome shotgun sequence	3921..4358	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033021475.1_PDT001952628.1_genomic.fna	Salmonella_enterica	0.5218	306.926 KB	5	aroC_50,dnaN_80,hemD_25,hisD_85,purE_40,sucA_58,thrA_4	239	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_4	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIHO010000001.1 Salmonella enterica strain PNUSAS394864 SAMN37944452-rid19945173.denovo.01, whole genome shotgun sequence	660762..661199	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIHO010000041.1 Salmonella enterica strain PNUSAS394864 SAMN37944452-rid19945173.guided.24, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOIHO010000024.1 Salmonella enterica strain PNUSAS394864 SAMN37944452-rid19945173.denovo.25, whole genome shotgun sequence	11456..12098																																																																	
GCA_033021495.1_PDT001952634.1_genomic.fna	Salmonella_enterica	0.5152	301.116 KB	6	aroC_88,dnaN_26,hemD_30,hisD_87,purE_21,sucA_87,thrA_80	243	61:l,v:1,5,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_87	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_80	61	l,v	1,5,7	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:l,v:1,5,7		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIHN010000005.1 Salmonella enterica strain PNUSAS394896 SAMN37944464-rid19945203.denovo.05, whole genome shotgun sequence	127423..127860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIHN010000036.1 Salmonella enterica strain PNUSAS394896 SAMN37944464-rid19945203.guided.28, whole genome shotgun sequence	2807..3244	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIHN010000001.1	144602..145471	96.437	870	0						
GCA_033021515.1_PDT001952626.1_genomic.fna	Salmonella_enterica	0.5232	397.215 KB	5	aroC_46,dnaN_54,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	127	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_54	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOIHP010000003.1 Salmonella enterica strain PNUSAS394886 SAMN37945682-rid19945163.denovo.03, whole genome shotgun sequence	255780..256217	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOIHP010000030.1 Salmonella enterica strain PNUSAS394886 SAMN37945682-rid19945163.guided.21, whole genome shotgun sequence	14362..14799	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIHP010000001.1	508799..509668	99.31	870	0						
GCA_033021535.1_PDT001952638.1_genomic.fna	Salmonella_enterica	0.5209	575.179 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOIHM010000001.1 Salmonella enterica strain PNUSAS394863 SAMN37945708-rid19945223.denovo.01, whole genome shotgun sequence	498165..498602	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOIHM010000025.1 Salmonella enterica strain PNUSAS394863 SAMN37945708-rid19945223.guided.12, whole genome shotgun sequence	41432..41869	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIHM010000004.1	406574..407442	99.425	870	0						
GCA_033021555.1_PDT001952623.1_genomic.fna	Salmonella_enterica	0.5196	229.716 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIHQ010000001.1 Salmonella enterica strain PNUSAS394876 SAMN37945673-rid19945143.denovo.01, whole genome shotgun sequence	486127..486564	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIHQ010000037.1 Salmonella enterica strain PNUSAS394876 SAMN37945673-rid19945143.guided.26, whole genome shotgun sequence	6822..7259	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOIHQ010000003.1 Salmonella enterica strain PNUSAS394876 SAMN37945673-rid19945143.denovo.03, whole genome shotgun sequence	388761..389183	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOIHQ010000038.1 Salmonella enterica strain PNUSAS394876 SAMN37945673-rid19945143.guided.31, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIHQ010000002.1	122302..123171	99.195	870	0						
GCA_033021575.1_PDT001952611.1_genomic.fna	Salmonella_enterica	0.5216	417.747 KB	5	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOIHR010000002.1 Salmonella enterica strain PNUSAS394900 SAMN37944467-rid19945073.denovo.02, whole genome shotgun sequence	135845..136282	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOIHR010000053.1 Salmonella enterica strain PNUSAS394900 SAMN37944467-rid19945073.guided.34, whole genome shotgun sequence	10083..10520	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.53	643 / 643	ABOIHR010000021.1 Salmonella enterica strain PNUSAS394900 SAMN37944467-rid19945073.denovo.21, whole genome shotgun sequence	4053..4695																																																						avrA	ABOIHR010000001.1	516512..517381	99.655	870	0						
GCA_033021595.1_PDT001952610.1_genomic.fna	Salmonella_enterica	0.5164	346.068 KB	6	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABOIHS010000006.1 Salmonella enterica strain PNUSAS394887 SAMN37944462-rid19945543.denovo.06, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABOIHS010000068.1 Salmonella enterica strain PNUSAS394887 SAMN37944462-rid19945543.guided.37, whole genome shotgun sequence	3913..4350	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABOIHS010000011.1 Salmonella enterica strain PNUSAS394887 SAMN37944462-rid19945543.denovo.11, whole genome shotgun sequence	117013..117655	enterobacteriales	IncFII(pMET)	90.92	584 / 577	ABOIHS010000032.1 Salmonella enterica strain PNUSAS394887 SAMN37944462-rid19945543.denovo.34, whole genome shotgun sequence	22684..23266																																																											
GCA_033021615.1_PDT001764547.1_genomic.fna	Salmonella_enterica	0.5231	503.825 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOIHT010000001.1 Salmonella enterica strain PNUSAS351967 SAMN35525454-rid18241613.denovo.01, whole genome shotgun sequence	666962..667399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOIHT010000024.1 Salmonella enterica strain PNUSAS351967 SAMN35525454-rid18241613.guided.19, whole genome shotgun sequence	519..956	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIHT010000004.1	407982..408851	99.31	870	0						
GCA_033021635.1_PDT001764546.1_genomic.fna	Salmonella_enterica	0.522	762.315 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	ColRNAI	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIHU010000001.1 Salmonella enterica strain PNUSAS351985 SAMN35525460-rid18241603.denovo.01, whole genome shotgun sequence	640513..640950	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOIHU010000016.1 Salmonella enterica strain PNUSAS351985 SAMN35525460-rid18241603.guided.08, whole genome shotgun sequence	7538..7975	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABOIHU010000011.1 Salmonella enterica strain PNUSAS351985 SAMN35525460-rid18241603.denovo.14, whole genome shotgun sequence	3981..4111																																																						avrA	ABOIHU010000004.1	553822..554691	99.77	870	0						
GCA_033021655.1_PDT001952717.1_genomic.fna	Salmonella_enterica	0.5197	161.062 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOIHV010000009.1 Salmonella enterica strain PNUSAS394860 SAMN37946745-rid19946153.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOIHV010000064.1 Salmonella enterica strain PNUSAS394860 SAMN37946745-rid19946153.guided.41, whole genome shotgun sequence	5380..5814	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_033021675.1_PDT001952679.1_genomic.fna	Salmonella_enterica	0.5202	231.819 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIHX010000001.1 Salmonella enterica strain PNUSAS395028 SAMN37946680-rid19945903.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIHX010000039.1 Salmonella enterica strain PNUSAS395028 SAMN37946680-rid19945903.guided.32, whole genome shotgun sequence	9778..10215	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOIHX010000003.1 Salmonella enterica strain PNUSAS395028 SAMN37946680-rid19945903.denovo.03, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOIHX010000041.1 Salmonella enterica strain PNUSAS395028 SAMN37946680-rid19945903.guided.35, whole genome shotgun sequence	1355..1777	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIHX010000002.1	203264..204133	99.195	870	0						
GCA_033021695.1_PDT001952682.1_genomic.fna	Salmonella_enterica	0.5215	220.306 KB	8	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIHW010000008.1 Salmonella enterica strain PNUSAS395017 SAMN37946681-rid19945923.denovo.08, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIHW010000046.1 Salmonella enterica strain PNUSAS395017 SAMN37946681-rid19945923.guided.37, whole genome shotgun sequence	9239..9676	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIHW010000001.1	39479..40347	99.31	870	0						
GCA_033021735.1_PDT001952677.1_genomic.fna	Salmonella_enterica	0.522	230.368 KB	6	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIHY010000003.1 Salmonella enterica strain PNUSAS394921 SAMN37945677-rid19945893.denovo.03, whole genome shotgun sequence	258782..259219	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIHY010000033.1 Salmonella enterica strain PNUSAS394921 SAMN37945677-rid19945893.guided.23, whole genome shotgun sequence	18389..18826	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIHY010000001.1	510749..511618	99.77	870	0						
GCA_033021835.1_PDT001952640.1_genomic.fna	Salmonella_enterica	0.5201	233.971 KB	8	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIIF010000005.1 Salmonella enterica strain PNUSAS394878 SAMN37945706-rid19945673.denovo.05, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIIF010000040.1 Salmonella enterica strain PNUSAS394878 SAMN37945706-rid19945673.guided.28, whole genome shotgun sequence	9039..9476	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOIIF010000024.1 Salmonella enterica strain PNUSAS394878 SAMN37945706-rid19945673.denovo.24, whole genome shotgun sequence	34971..35504																																																						avrA	ABOIIF010000010.1	163066..163935	99.655	870	0						
GCA_033021855.1_PDT001952642.1_genomic.fna	Salmonella_enterica	0.5226	341.275 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIIE010000001.1 Salmonella enterica strain PNUSAS394916 SAMN37946180-rid19945683.denovo.01, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIIE010000028.1 Salmonella enterica strain PNUSAS394916 SAMN37946180-rid19945683.guided.17, whole genome shotgun sequence	34788..35225	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIIE010000005.1	28833..29702	98.966	870	0						
GCA_033021875.1_PDT001764545.1_genomic.fna	Salmonella_enterica	0.5215	139.919 KB	11	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOIIH010000038.1 Salmonella enterica strain PNUSAS351997 SAMN35525448-rid18241593.denovo.38, whole genome shotgun sequence	37657..38094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABOIIH010000081.1 Salmonella enterica strain PNUSAS351997 SAMN35525448-rid18241593.guided.58, whole genome shotgun sequence	2670..3107	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABOIIH010000024.1 Salmonella enterica strain PNUSAS351997 SAMN35525448-rid18241593.denovo.24, whole genome shotgun sequence	68874..69135																																																						avrA	ABOIIH010000009.1	93998..94867	98.966	870	0						
GCA_033021895.1_PDT001952624.1_genomic.fna	Salmonella_enterica	0.5165	246.066 KB	7	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(pMET),IncI1-I(Alpha)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABOIIG010000009.1 Salmonella enterica strain PNUSAS394902 SAMN37944461-rid19945153.denovo.09, whole genome shotgun sequence	7116..7553	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABOIIG010000061.1 Salmonella enterica strain PNUSAS394902 SAMN37944461-rid19945153.guided.36, whole genome shotgun sequence	4407..4844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABOIIG010000013.1 Salmonella enterica strain PNUSAS394902 SAMN37944461-rid19945153.denovo.13, whole genome shotgun sequence	117023..117665	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABOIIG010000034.1 Salmonella enterica strain PNUSAS394902 SAMN37944461-rid19945153.denovo.35, whole genome shotgun sequence	18865..19447		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOIIG010000018.1 Salmonella enterica strain PNUSAS394902 SAMN37944461-rid19945153.denovo.18, whole genome shotgun sequence	73044..73185																																																				
GCA_033021915.1_PDT001764544.1_genomic.fna	Salmonella_enterica	0.5218	279.769 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	0		1	ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIII010000001.1 Salmonella enterica strain PNUSAS351977 SAMN35525455-rid18241583.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIII010000032.1 Salmonella enterica strain PNUSAS351977 SAMN35525455-rid18241583.denovo.36, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIII010000032.1 Salmonella enterica strain PNUSAS351977 SAMN35525455-rid18241583.denovo.36, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOIII010000050.1 Salmonella enterica strain PNUSAS351977 SAMN35525455-rid18241583.guided.32, whole genome shotgun sequence	7785..8222	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIII010000051.1 Salmonella enterica strain PNUSAS351977 SAMN35525455-rid18241583.guided.35, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIII010000051.1 Salmonella enterica strain PNUSAS351977 SAMN35525455-rid18241583.guided.35, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOIII010000040.1 Salmonella enterica strain PNUSAS351977 SAMN35525455-rid18241583.denovo.45, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOIII010000052.1 Salmonella enterica strain PNUSAS351977 SAMN35525455-rid18241583.guided.44, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOIII010000032.1 Salmonella enterica strain PNUSAS351977 SAMN35525455-rid18241583.denovo.36, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOIII010000051.1 Salmonella enterica strain PNUSAS351977 SAMN35525455-rid18241583.guided.35, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	ColpVC	97.93	193 / 193	ABOIII010000041.1 Salmonella enterica strain PNUSAS351977 SAMN35525455-rid18241583.denovo.46, whole genome shotgun sequence	996..1188																																																						avrA	ABOIII010000002.1	434666..435535	99.885	870	0						
GCA_033021935.1_PDT001764543.1_genomic.fna	Salmonella_enterica	0.5223	737.384 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIIJ010000001.1 Salmonella enterica strain PNUSAS351984 SAMN35525465-rid18241573.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOIIJ010000016.1 Salmonella enterica strain PNUSAS351984 SAMN35525465-rid18241573.guided.11, whole genome shotgun sequence	9321..9758	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIIJ010000002.1	561746..562616	99.656	871	0						
GCA_033021955.1_PDT001764542.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIIK010000001.1 Salmonella enterica strain PNUSAS351990 SAMN35525462-rid18241563.denovo.01, whole genome shotgun sequence	496823..497260	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIIK010000024.1 Salmonella enterica strain PNUSAS351990 SAMN35525462-rid18241563.guided.18, whole genome shotgun sequence	7912..8349	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIIK010000013.1 Salmonella enterica strain PNUSAS351990 SAMN35525462-rid18241563.denovo.13, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABOIIK010000017.1 Salmonella enterica strain PNUSAS351990 SAMN35525462-rid18241563.denovo.19, whole genome shotgun sequence	3446..3707																																																avrA	ABOIIK010000002.1	553626..554495	99.54	870	0						
GCA_033021975.1_PDT001764541.1_genomic.fna	Salmonella_enterica	0.5214	375.777 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIIL010000001.1 Salmonella enterica strain PNUSAS352004 SAMN35525442-rid18241553.denovo.01, whole genome shotgun sequence	765075..765512	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIIL010000034.1 Salmonella enterica strain PNUSAS352004 SAMN35525442-rid18241553.guided.25, whole genome shotgun sequence	4061..4498	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABOIIL010000025.1 Salmonella enterica strain PNUSAS352004 SAMN35525442-rid18241553.denovo.28, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIIL010000020.1 Salmonella enterica strain PNUSAS352004 SAMN35525442-rid18241553.denovo.21, whole genome shotgun sequence	6796..7438		enterobacteriales	IncFII(S)	100	262 / 262	ABOIIL010000021.1 Salmonella enterica strain PNUSAS352004 SAMN35525442-rid18241553.denovo.22, whole genome shotgun sequence	3402..3663																																									avrA	ABOIIL010000002.1	553642..554511	99.54	870	0						
GCA_033021995.1_PDT001764537.1_genomic.fna	Salmonella_enterica	0.5222	581.461 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncB/O/K/Z	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIIP010000001.1 Salmonella enterica strain PNUSAS352007 SAMN35525443-rid18241513.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOIIP010000020.1 Salmonella enterica strain PNUSAS352007 SAMN35525443-rid18241513.guided.14, whole genome shotgun sequence	4763..5200	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncB/O/K/Z	96.69	151 / 151	ABOIIP010000011.1 Salmonella enterica strain PNUSAS352007 SAMN35525443-rid18241513.denovo.11, whole genome shotgun sequence	45969..46119																																																						avrA	ABOIIP010000002.1	553863..554732	99.655	870	0						
GCA_033022015.1_PDT001764540.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIIM010000001.1 Salmonella enterica strain PNUSAS351989 SAMN35525458-rid18241543.denovo.01, whole genome shotgun sequence	780554..780991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIIM010000021.1 Salmonella enterica strain PNUSAS351989 SAMN35525458-rid18241543.guided.17, whole genome shotgun sequence	3815..4252	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIIM010000012.1 Salmonella enterica strain PNUSAS351989 SAMN35525458-rid18241543.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOIIM010000015.1 Salmonella enterica strain PNUSAS351989 SAMN35525458-rid18241543.denovo.16, whole genome shotgun sequence	3423..3684																																																avrA	ABOIIM010000002.1	553636..554505	99.54	870	0						
GCA_033022025.1_PDT001764538.1_genomic.fna	Salmonella_enterica	0.5215	408.155 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIIO010000001.1 Salmonella enterica strain PNUSAS352002 SAMN35525447-rid18241523.denovo.01, whole genome shotgun sequence	477376..477813	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIIO010000027.1 Salmonella enterica strain PNUSAS352002 SAMN35525447-rid18241523.guided.24, whole genome shotgun sequence	347..784	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIIO010000010.1	150695..151565	99.196	871	0						
GCA_033022035.1_PDT001764539.1_genomic.fna	Salmonella_enterica	0.5208	494.776 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOIIN010000001.1 Salmonella enterica strain PNUSAS351968 SAMN35525457-rid18241533.denovo.01, whole genome shotgun sequence	767051..767488	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOIIN010000027.1 Salmonella enterica strain PNUSAS351968 SAMN35525457-rid18241533.guided.21, whole genome shotgun sequence	13107..13544	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABOIIN010000020.1 Salmonella enterica strain PNUSAS351968 SAMN35525457-rid18241533.denovo.23, whole genome shotgun sequence	3981..4111																																																						avrA	ABOIIN010000002.1	561313..562182	99.425	870	0						
GCA_033022075.1_PDT001764536.1_genomic.fna	Salmonella_enterica	0.5207	425.534 KB	6	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIIR010000001.1 Salmonella enterica strain PNUSAS352010 SAMN35525446-rid18241503.denovo.01, whole genome shotgun sequence	452979..453416	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIIR010000054.1 Salmonella enterica strain PNUSAS352010 SAMN35525446-rid18241503.guided.32, whole genome shotgun sequence	3106..3543	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOIIR010000022.1 Salmonella enterica strain PNUSAS352010 SAMN35525446-rid18241503.denovo.22, whole genome shotgun sequence	5946..6588																																																						avrA	ABOIIR010000006.1	139987..140856	99.31	870	0						
GCA_033022095.1_PDT001764533.1_genomic.fna	Salmonella_enterica	0.5216	268.715 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIIT010000001.1 Salmonella enterica strain PNUSAS351957 SAMN35525430-rid18241473.denovo.01, whole genome shotgun sequence	207028..207465	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIIT010000046.1 Salmonella enterica strain PNUSAS351957 SAMN35525430-rid18241473.guided.30, whole genome shotgun sequence	22223..22660	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOIIT010000018.1 Salmonella enterica strain PNUSAS351957 SAMN35525430-rid18241473.denovo.18, whole genome shotgun sequence	40552..41194	enterobacteriales	IncFII(S)	100	262 / 262	ABOIIT010000018.1 Salmonella enterica strain PNUSAS351957 SAMN35525430-rid18241473.denovo.18, whole genome shotgun sequence	56279..56540																																																avrA	ABOIIT010000007.1	94134..95003	99.885	870	0						
GCA_033022115.1_PDT001764535.1_genomic.fna	Salmonella_enterica	0.5216	390.275 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOIIS010000001.1 Salmonella enterica strain PNUSAS352003 SAMN35525444-rid18241493.denovo.01, whole genome shotgun sequence	547835..548272	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.34	355/438	ABOIIS010000030.1 Salmonella enterica strain PNUSAS352003 SAMN35525444-rid18241493.guided.26, whole genome shotgun sequence	1..355	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOIIS010000015.1 Salmonella enterica strain PNUSAS352003 SAMN35525444-rid18241493.denovo.15, whole genome shotgun sequence	68649..68790																																																						avrA	ABOIIS010000002.1	395038..395906	99.425	870	0						
GCA_033022135.1_PDT001764534.1_genomic.fna	Salmonella_enterica	0.5227	364.009 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIIQ010000001.1 Salmonella enterica strain PNUSAS352000 SAMN35525445-rid18241483.denovo.01, whole genome shotgun sequence	454795..455232	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIIQ010000031.1 Salmonella enterica strain PNUSAS352000 SAMN35525445-rid18241483.guided.19, whole genome shotgun sequence	11667..12104	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIIQ010000005.1	183135..184004	98.966	870	0						
GCA_033022155.1_PDT001764531.1_genomic.fna	Salmonella_enterica	0.521	202.344 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIIV010000001.1 Salmonella enterica strain PNUSAS351980 SAMN35525424-rid18241453.denovo.01, whole genome shotgun sequence	312780..313217	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIIV010000053.1 Salmonella enterica strain PNUSAS351980 SAMN35525424-rid18241453.guided.40, whole genome shotgun sequence	3031..3468	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABOIIV010000015.1 Salmonella enterica strain PNUSAS351980 SAMN35525424-rid18241453.denovo.15, whole genome shotgun sequence	108801..109443																																																																	
GCA_033022175.1_PDT001764532.1_genomic.fna	Salmonella_enterica	0.5224	526.332 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIIU010000001.1 Salmonella enterica strain PNUSAS351974 SAMN35525427-rid18241463.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIIU010000026.1 Salmonella enterica strain PNUSAS351974 SAMN35525427-rid18241463.guided.14, whole genome shotgun sequence	16576..17013	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIIU010000003.1	150300..151169	99.655	870	0						
GCA_033022195.1_PDT001764530.1_genomic.fna	Salmonella_enterica	0.5227	299.353 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIIW010000001.1 Salmonella enterica strain PNUSAS351979 SAMN35525423-rid18241443.denovo.01, whole genome shotgun sequence	108641..109078	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIIW010000029.1 Salmonella enterica strain PNUSAS351979 SAMN35525423-rid18241443.guided.25, whole genome shotgun sequence	1451..1888	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIIW010000004.1	149551..150420	99.655	870	0						
GCA_033022215.1_PDT001764528.1_genomic.fna	Salmonella_enterica	0.5139	310.071 KB	7	aroC_289,dnaN_26,hemD_30,hisD_84,purE_714,sucA_353,thrA_134	9173	-:z52:z53	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_289	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_84	purE	100	100	purE_714	sucA	100	100	sucA_353	thrA	100	100	thrA_134	-	z52	z53	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb -:z52:z53	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABOIIZ010000006.1 Salmonella enterica strain PNUSAS351982 SAMN35525431-rid18241423.denovo.06, whole genome shotgun sequence	216520..216957	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABOIIZ010000052.1 Salmonella enterica strain PNUSAS351982 SAMN35525431-rid18241423.guided.24, whole genome shotgun sequence	20528..20965	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	97.71	262 / 262	ABOIIZ010000020.1 Salmonella enterica strain PNUSAS351982 SAMN35525431-rid18241423.denovo.20, whole genome shotgun sequence	35415..35674																																																						avrA	ABOIIZ010000003.1	90791..91660	96.552	870	0						
GCA_033022235.1_PDT001764529.1_genomic.fna	Salmonella_enterica	0.5221	725.021 KB	2	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOIIX010000001.1 Salmonella enterica strain PNUSAS351987 SAMN35525426-rid18241433.denovo.01, whole genome shotgun sequence	1377044..1377481	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOIIX010000017.1 Salmonella enterica strain PNUSAS351987 SAMN35525426-rid18241433.guided.13, whole genome shotgun sequence	12585..13022	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIIX010000002.1	575638..576506	99.655	869	0						
GCA_033022255.1_PDT001764527.1_genomic.fna	Salmonella_enterica	0.5212	485.463 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIIY010000001.1 Salmonella enterica strain PNUSAS351962 SAMN35525435-rid18241413.denovo.01, whole genome shotgun sequence	308095..308532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIIY010000025.1 Salmonella enterica strain PNUSAS351962 SAMN35525435-rid18241413.guided.21, whole genome shotgun sequence	213..650	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033022275.1_PDT001764525.1_genomic.fna	Salmonella_enterica	0.5193	368.134 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIJB010000001.1 Salmonella enterica strain PNUSAS351970 SAMN35525434-rid18241393.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIJB010000034.1 Salmonella enterica strain PNUSAS351970 SAMN35525434-rid18241393.guided.26, whole genome shotgun sequence	3404..3841	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOIJB010000005.1 Salmonella enterica strain PNUSAS351970 SAMN35525434-rid18241393.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOIJB010000035.1 Salmonella enterica strain PNUSAS351970 SAMN35525434-rid18241393.guided.27, whole genome shotgun sequence	1764..2186	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIJB010000002.1	174412..175281	99.195	870	0						
GCA_033022295.1_PDT001764524.1_genomic.fna	Salmonella_enterica	0.5216	341.897 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIJC010000003.1 Salmonella enterica strain PNUSAS351963 SAMN35525429-rid18241383.denovo.03, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIJC010000042.1 Salmonella enterica strain PNUSAS351963 SAMN35525429-rid18241383.guided.25, whole genome shotgun sequence	14236..14673	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOIJC010000016.1 Salmonella enterica strain PNUSAS351963 SAMN35525429-rid18241383.denovo.16, whole genome shotgun sequence	48410..49052	enterobacteriales	IncFII(S)	100	262 / 262	ABOIJC010000016.1 Salmonella enterica strain PNUSAS351963 SAMN35525429-rid18241383.denovo.16, whole genome shotgun sequence	64137..64398		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOIJC010000017.1 Salmonella enterica strain PNUSAS351963 SAMN35525429-rid18241383.denovo.17, whole genome shotgun sequence	76549..76690																																									avrA	ABOIJC010000004.1	210114..210982	100	869	0						
GCA_033022315.1_PDT001764526.1_genomic.fna	Salmonella_enterica	0.5221	203.428 KB	7	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIJA010000001.1 Salmonella enterica strain PNUSAS351966 SAMN35525419-rid18241403.denovo.01, whole genome shotgun sequence	408731..409168	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIJA010000047.1 Salmonella enterica strain PNUSAS351966 SAMN35525419-rid18241403.guided.27, whole genome shotgun sequence	10986..11423	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033022335.1_PDT001764522.1_genomic.fna	Salmonella_enterica	0.5216	465.75 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIJE010000002.1 Salmonella enterica strain PNUSAS351958 SAMN35525436-rid18241363.denovo.02, whole genome shotgun sequence	374634..375071	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIJE010000032.1 Salmonella enterica strain PNUSAS351958 SAMN35525436-rid18241363.guided.25, whole genome shotgun sequence	5..442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIJE010000010.1	140203..141071	99.195	870	0						
GCA_033022355.1_PDT001764523.1_genomic.fna	Salmonella_enterica	0.5206	692.778 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	-	Salmonella enterica subspecies enterica (subspecies I)	I 9:l,z28:-	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOIJD010000001.1 Salmonella enterica strain PNUSAS351964 SAMN35525428-rid18241373.denovo.01, whole genome shotgun sequence	1356140..1356577	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOIJD010000025.1 Salmonella enterica strain PNUSAS351964 SAMN35525428-rid18241373.guided.16, whole genome shotgun sequence	2539..2976	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIJD010000002.1	545060..545928	99.425	870	0						
GCA_033022375.1_PDT001764521.1_genomic.fna	Salmonella_enterica	0.5213	225.554 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIJF010000002.1 Salmonella enterica strain PNUSAS351973 SAMN35525417-rid18241353.denovo.02, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOIJF010000024.1 Salmonella enterica strain PNUSAS351973 SAMN35525417-rid18241353.denovo.24, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABOIJF010000043.1 Salmonella enterica strain PNUSAS351973 SAMN35525417-rid18241353.guided.33, whole genome shotgun sequence	4755..5192	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOIJF010000048.1 Salmonella enterica strain PNUSAS351973 SAMN35525417-rid18241353.guided.46, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOIJF010000032.1 Salmonella enterica strain PNUSAS351973 SAMN35525417-rid18241353.denovo.35, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOIJF010000047.1 Salmonella enterica strain PNUSAS351973 SAMN35525417-rid18241353.guided.42, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABOIJF010000032.1 Salmonella enterica strain PNUSAS351973 SAMN35525417-rid18241353.denovo.35, whole genome shotgun sequence	6603..7817	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABOIJF010000046.1 Salmonella enterica strain PNUSAS351973 SAMN35525417-rid18241353.guided.37, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOIJF010000042.1 Salmonella enterica strain PNUSAS351973 SAMN35525417-rid18241353.guided.28, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABOIJF010000032.1 Salmonella enterica strain PNUSAS351973 SAMN35525417-rid18241353.denovo.35, whole genome shotgun sequence	4491..5666	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABOIJF010000046.1 Salmonella enterica strain PNUSAS351973 SAMN35525417-rid18241353.guided.37, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	Col440I	92.04	113 / 114	ABOIJF010000035.1 Salmonella enterica strain PNUSAS351973 SAMN35525417-rid18241353.denovo.40, whole genome shotgun sequence	1334..1446	enterobacteriales	IncFIB(S)	100	643 / 643	ABOIJF010000021.1 Salmonella enterica strain PNUSAS351973 SAMN35525417-rid18241353.denovo.21, whole genome shotgun sequence	36050..36692		enterobacteriales	IncFII(S)	100	262 / 262	ABOIJF010000021.1 Salmonella enterica strain PNUSAS351973 SAMN35525417-rid18241353.denovo.21, whole genome shotgun sequence	51777..52038																																									avrA	ABOIJF010000004.1	174490..175359	99.885	870	0						
GCA_033022395.1_PDT001764520.1_genomic.fna	Salmonella_enterica	0.5213	341.837 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA2b,aph(3')-IIa,aph(6)-Id,aph(3'')-Ib,aadA2b,aph(3')-IIa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,floR,floR,qnrB19,qnrB19,sul2,sul1,sul2,sul1,tet(A),tet(A)	0		4	Col(pHAD28),Col(pHAD28),IncC,IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIJH010000001.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.denovo.01, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIJH010000024.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.denovo.24, whole genome shotgun sequence	21486..22322	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIJH010000024.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.denovo.24, whole genome shotgun sequence	20683..21486	Streptomycin	AF321551	aadA2b	99.87	780/780	ABOIJH010000033.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.denovo.35, whole genome shotgun sequence	7459..8238	Spectinomycin, Streptomycin	D43625	aph(3')-IIa	100	795/795	ABOIJH010000037.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.denovo.40, whole genome shotgun sequence	5464..6258	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	aph(6)-Id	100	837/837	ABOIJH010000060.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.guided.30, whole genome shotgun sequence	21527..22363	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIJH010000060.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.guided.30, whole genome shotgun sequence	20724..21527	Streptomycin	AF321551	aadA2b	99.87	780/780	ABOIJH010000061.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.guided.34, whole genome shotgun sequence	7055..7834	Spectinomycin, Streptomycin	D43625	aph(3')-IIa	100	795/795	ABOIJH010000062.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.guided.39, whole genome shotgun sequence	3346..4140	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	aac(6')-Iaa	100	438/438	ABOIJH010000065.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.guided.47, whole genome shotgun sequence	3782..4219	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOIJH010000038.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.denovo.42, whole genome shotgun sequence	2884..3744	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOIJH010000063.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.guided.41, whole genome shotgun sequence	3982..4842	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABOIJH010000024.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.denovo.24, whole genome shotgun sequence	25458..26671	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOIJH010000066.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.guided.50, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABOIJH010000044.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.denovo.53, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOIJH010000068.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.guided.52, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABOIJH010000024.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.denovo.24, whole genome shotgun sequence	19807..20622	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOIJH010000033.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.denovo.35, whole genome shotgun sequence	6115..6954	Sulfamethoxazole	U12338	sul2	100	816/816	ABOIJH010000060.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.guided.30, whole genome shotgun sequence	19848..20663	Sulfamethoxazole	AY034138	sul1	100	840/840	ABOIJH010000061.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.guided.34, whole genome shotgun sequence	8339..9178	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOIJH010000024.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.denovo.24, whole genome shotgun sequence	23583..24857	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOIJH010000069.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.guided.55, whole genome shotgun sequence	1212..2486	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	100	131 / 131	ABOIJH010000044.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.denovo.53, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOIJH010000068.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.guided.52, whole genome shotgun sequence	2044..2174		enterobacteriales	IncC	100	417 / 417	ABOIJH010000024.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.denovo.24, whole genome shotgun sequence	52441..52857		enterobacteriales	IncFII(S)	100	262 / 262	ABOIJH010000017.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.denovo.17, whole genome shotgun sequence	1966..2227		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOIJH010000032.1 Salmonella enterica strain PNUSAS351965 SAMN35525433-rid18241343.denovo.33, whole genome shotgun sequence	2549..2690																											avrA	ABOIJH010000010.1	174231..175100	99.885	870	0						
GCA_033022415.1_PDT001764519.1_genomic.fna	Salmonella_enterica	0.5213	428.841 KB	5	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	3	Col8282,IncR,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIJI010000004.1 Salmonella enterica strain PNUSAS351960 SAMN35525418-rid18241333.denovo.04, whole genome shotgun sequence	258013..258450	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOIJI010000041.1 Salmonella enterica strain PNUSAS351960 SAMN35525418-rid18241333.guided.28, whole genome shotgun sequence	4481..4918	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABOIJI010000019.1 Salmonella enterica strain PNUSAS351960 SAMN35525418-rid18241333.denovo.19, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOIJI010000040.1 Salmonella enterica strain PNUSAS351960 SAMN35525418-rid18241333.guided.24, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOIJI010000019.1 Salmonella enterica strain PNUSAS351960 SAMN35525418-rid18241333.denovo.19, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOIJI010000042.1 Salmonella enterica strain PNUSAS351960 SAMN35525418-rid18241333.guided.33, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOIJI010000019.1 Salmonella enterica strain PNUSAS351960 SAMN35525418-rid18241333.denovo.19, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABOIJI010000040.1 Salmonella enterica strain PNUSAS351960 SAMN35525418-rid18241333.guided.24, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOIJI010000019.1 Salmonella enterica strain PNUSAS351960 SAMN35525418-rid18241333.denovo.19, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOIJI010000040.1 Salmonella enterica strain PNUSAS351960 SAMN35525418-rid18241333.guided.24, whole genome shotgun sequence	9840..11114	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOIJI010000019.1 Salmonella enterica strain PNUSAS351960 SAMN35525418-rid18241333.denovo.19, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABOIJI010000040.1 Salmonella enterica strain PNUSAS351960 SAMN35525418-rid18241333.guided.24, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col8282	100	207 / 207	ABOIJI010000027.1 Salmonella enterica strain PNUSAS351960 SAMN35525418-rid18241333.denovo.31, whole genome shotgun sequence	414..620	enterobacteriales	IncR	100	251 / 251	ABOIJI010000020.1 Salmonella enterica strain PNUSAS351960 SAMN35525418-rid18241333.denovo.21, whole genome shotgun sequence	4434..4684		enterobacteriales	IncX1	94.92	374 / 374	ABOIJI010000016.1 Salmonella enterica strain PNUSAS351960 SAMN35525418-rid18241333.denovo.16, whole genome shotgun sequence	13796..14169																																									avrA	ABOIJI010000001.1	585449..586318	99.77	870	0						
GCA_033022435.1_PDT001764518.1_genomic.fna	Salmonella_enterica	0.5214	550.793 KB	2	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOIJG010000001.1 Salmonella enterica strain PNUSAS351988 SAMN35525425-rid18241323.denovo.01, whole genome shotgun sequence	1339407..1339844	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOIJG010000019.1 Salmonella enterica strain PNUSAS351988 SAMN35525425-rid18241323.guided.16, whole genome shotgun sequence	15899..16336	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIJG010000002.1	149711..150580	99.425	870	0						
GCA_033022475.1_PDT001764517.1_genomic.fna	Salmonella_enterica	0.5212	489.917 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIJJ010000001.1 Salmonella enterica strain PNUSAS351981 SAMN35525432-rid18241313.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIJJ010000021.1 Salmonella enterica strain PNUSAS351981 SAMN35525432-rid18241313.guided.15, whole genome shotgun sequence	8300..8737	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIJJ010000012.1 Salmonella enterica strain PNUSAS351981 SAMN35525432-rid18241313.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOIJJ010000015.1 Salmonella enterica strain PNUSAS351981 SAMN35525432-rid18241313.denovo.16, whole genome shotgun sequence	3404..3665																																																avrA	ABOIJJ010000002.1	584093..584962	99.54	870	0						
GCA_033022535.1_PDT001764516.1_genomic.fna	Salmonella_enterica	0.5213	489.863 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIJN010000001.1 Salmonella enterica strain PNUSAS351978 SAMN35525420-rid18241303.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIJN010000022.1 Salmonella enterica strain PNUSAS351978 SAMN35525420-rid18241303.guided.16, whole genome shotgun sequence	4382..4819	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIJN010000012.1 Salmonella enterica strain PNUSAS351978 SAMN35525420-rid18241303.denovo.12, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABOIJN010000015.1 Salmonella enterica strain PNUSAS351978 SAMN35525420-rid18241303.denovo.18, whole genome shotgun sequence	3406..3667																																																avrA	ABOIJN010000002.1	553572..554441	99.54	870	0						
GCA_033022555.1_PDT001764515.1_genomic.fna	Salmonella_enterica	0.5229	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pHCM2)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIJP010000001.1 Salmonella enterica strain PNUSAS351971 SAMN35525421-rid18241293.denovo.01, whole genome shotgun sequence	626592..627029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIJP010000033.1 Salmonella enterica strain PNUSAS351971 SAMN35525421-rid18241293.guided.23, whole genome shotgun sequence	9221..9658	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	97.29	884 / 875	ABOIJP010000012.1 Salmonella enterica strain PNUSAS351971 SAMN35525421-rid18241293.denovo.12, whole genome shotgun sequence	12149..13032																																																						avrA	ABOIJP010000003.1	94091..94960	99.655	870	0						
GCA_033022575.1_PDT001764514.1_genomic.fna	Salmonella_enterica	0.5202	412.535 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIJO010000001.1 Salmonella enterica strain PNUSAS351972 SAMN35525422-rid18241283.denovo.01, whole genome shotgun sequence	642724..643161	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIJO010000017.1 Salmonella enterica strain PNUSAS351972 SAMN35525422-rid18241283.guided.12, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033023615.1_PDT001952652.1_genomic.fna	Salmonella_enterica	0.5202	283.245 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIJV010000002.1 Salmonella enterica strain PNUSAS394904 SAMN37944463-rid19945733.denovo.02, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIJV010000054.1 Salmonella enterica strain PNUSAS394904 SAMN37944463-rid19945733.guided.26, whole genome shotgun sequence	31439..31876	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	ABOIJV010000017.1 Salmonella enterica strain PNUSAS394904 SAMN37944463-rid19945733.denovo.17, whole genome shotgun sequence	69424..69563																																																						avrA	ABOIJV010000019.1	39491..40361	99.196	871	0						
GCA_033024615.1_PDT001953272.1_genomic.fna	Salmonella_enterica	0.5209	272.611 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIJX010000002.1 Salmonella enterica strain PNUSAS395235 SAMN37953971-rid19948763.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIJX010000051.1 Salmonella enterica strain PNUSAS395235 SAMN37953971-rid19948763.guided.31, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOIJX010000019.1 Salmonella enterica strain PNUSAS395235 SAMN37953971-rid19948763.denovo.19, whole genome shotgun sequence	71158..71299																																																						avrA	ABOIJX010000007.1	98459..99327	100	869	0						
GCA_033024635.1_PDT001953276.1_genomic.fna	Salmonella_enterica	0.5207	514.183 KB	4	aroC_19,dnaN_36,hemD_8,hisD_280,purE_140,sucA_298,thrA_102	4010	35:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_19	dnaN	100	100	dnaN_36	hemD	100	100	hemD_8	hisD	100	100	hisD_280	purE	100	100	purE_140	sucA	100	100	sucA_298	thrA	100	100	thrA_102	35	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Monschaui		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOIJW010000001.1 Salmonella enterica strain PNUSAS395215 SAMN37953949-rid19948803.denovo.01, whole genome shotgun sequence	123605..124042	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOIJW010000025.1 Salmonella enterica strain PNUSAS395215 SAMN37953949-rid19948803.guided.20, whole genome shotgun sequence	9074..9511	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOIJW010000015.1 Salmonella enterica strain PNUSAS395215 SAMN37953949-rid19948803.denovo.16, whole genome shotgun sequence	557..1090																																																						avrA	ABOIJW010000002.1	518347..519216	99.195	870	0						
GCA_033024655.1_PDT001953273.1_genomic.fna	Salmonella_enterica	0.5224	316.505 KB	5	aroC_43,dnaN_41,hemD_16,hisD_13,purE_12,sucA_13,thrA_4	195	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIKA010000005.1 Salmonella enterica strain PNUSAS395204 SAMN37953972-rid19948773.denovo.05, whole genome shotgun sequence	170337..170774	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIKA010000033.1 Salmonella enterica strain PNUSAS395204 SAMN37953972-rid19948773.guided.25, whole genome shotgun sequence	7908..8345	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033024675.1_PDT001953277.1_genomic.fna	Salmonella_enterica	0.522	273.33 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIKD010000002.1 Salmonella enterica strain PNUSAS395241 SAMN37953942-rid19948813.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIKD010000049.1 Salmonella enterica strain PNUSAS395241 SAMN37953942-rid19948813.guided.32, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOIKD010000022.1 Salmonella enterica strain PNUSAS395241 SAMN37953942-rid19948813.denovo.22, whole genome shotgun sequence	44749..45391	enterobacteriales	IncFII(S)	100	262 / 262	ABOIKD010000022.1 Salmonella enterica strain PNUSAS395241 SAMN37953942-rid19948813.denovo.22, whole genome shotgun sequence	29403..29664																																																avrA	ABOIKD010000005.1	157894..158762	100	869	0						
GCA_033024695.1_PDT001953274.1_genomic.fna	Salmonella_enterica	0.5207	466.459 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIKB010000001.1 Salmonella enterica strain PNUSAS395221 SAMN37953965-rid19948783.denovo.01, whole genome shotgun sequence	562114..562551	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIKB010000032.1 Salmonella enterica strain PNUSAS395221 SAMN37953965-rid19948783.guided.21, whole genome shotgun sequence	3168..3605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIKB010000011.1	93876..94744	99.195	870	0						
GCA_033024715.1_PDT001953271.1_genomic.fna	Salmonella_enterica	0.5194	431.526 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIKC010000001.1 Salmonella enterica strain PNUSAS395222 SAMN37953964-rid19948753.denovo.01, whole genome shotgun sequence	596374..596811	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIKC010000031.1 Salmonella enterica strain PNUSAS395222 SAMN37953964-rid19948753.guided.23, whole genome shotgun sequence	2341..2778	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIKC010000010.1	140310..141178	99.195	870	0						
GCA_033024735.1_PDT001953269.1_genomic.fna	Salmonella_enterica	0.52	670.727 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(p14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOIJZ010000001.1 Salmonella enterica strain PNUSAS395246 SAMN37953945-rid19948743.denovo.01, whole genome shotgun sequence	498161..498598	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOIJZ010000022.1 Salmonella enterica strain PNUSAS395246 SAMN37953945-rid19948743.guided.09, whole genome shotgun sequence	24001..24438	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOIJZ010000011.1 Salmonella enterica strain PNUSAS395246 SAMN37953945-rid19948743.denovo.13, whole genome shotgun sequence	17040..17682	enterobacteriales	IncFII(p14)	92.02	263 / 262	ABOIJZ010000011.1 Salmonella enterica strain PNUSAS395246 SAMN37953945-rid19948743.denovo.13, whole genome shotgun sequence	33586..33844																																																avrA	ABOIJZ010000003.1	498711..499579	99.425	870	0						
GCA_033024755.1_PDT001953268.1_genomic.fna	Salmonella_enterica	0.522	277.935 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIJY010000002.1 Salmonella enterica strain PNUSAS395236 SAMN37953943-rid19947473.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIJY010000048.1 Salmonella enterica strain PNUSAS395236 SAMN37953943-rid19947473.guided.41, whole genome shotgun sequence	896..1333	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOIJY010000025.1 Salmonella enterica strain PNUSAS395236 SAMN37953943-rid19947473.denovo.25, whole genome shotgun sequence	44728..45370	enterobacteriales	IncFII(S)	100	262 / 262	ABOIJY010000025.1 Salmonella enterica strain PNUSAS395236 SAMN37953943-rid19947473.denovo.25, whole genome shotgun sequence	29382..29643																																																avrA	ABOIJY010000007.1	208711..209579	100	869	0						
GCA_033024775.1_PDT001953266.1_genomic.fna	Salmonella_enterica	0.5213	737.677 KB	3	aroC_50,dnaN_10,hemD_25,hisD_72,purE_10,sucA_13,thrA_4	414	9:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Eastbourne		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOIKL010000002.1 Salmonella enterica strain PNUSAS395231 SAMN37953944-rid19948723.denovo.02, whole genome shotgun sequence	645692..646129	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOIKL010000022.1 Salmonella enterica strain PNUSAS395231 SAMN37953944-rid19948723.guided.16, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOIKL010000009.1 Salmonella enterica strain PNUSAS395231 SAMN37953944-rid19948723.denovo.09, whole genome shotgun sequence	80614..80755																																																						avrA	ABOIKL010000004.1	94298..95167	99.31	870	0						
GCA_033024795.1_PDT001953264.1_genomic.fna	Salmonella_enterica	0.5226	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIKE010000001.1 Salmonella enterica strain PNUSAS395203 SAMN37953948-rid19948703.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIKE010000022.1 Salmonella enterica strain PNUSAS395203 SAMN37953948-rid19948703.guided.16, whole genome shotgun sequence	9738..10175	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIKE010000002.1	147026..147895	98.966	870	0						
GCA_033024815.1_PDT001953267.1_genomic.fna	Salmonella_enterica	0.5207	655.982 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIKG010000001.1 Salmonella enterica strain PNUSAS395209 SAMN37953967-rid19948733.denovo.01, whole genome shotgun sequence	477449..477886	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIKG010000036.1 Salmonella enterica strain PNUSAS395209 SAMN37953967-rid19948733.guided.13, whole genome shotgun sequence	42069..42506	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIKG010000003.1	504319..505189	99.196	871	0						
GCA_033024835.1_PDT001953260.1_genomic.fna	Salmonella_enterica	0.5213	694.769 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIKK010000001.1 Salmonella enterica strain PNUSAS395228 SAMN37953966-rid19947463.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIKK010000023.1 Salmonella enterica strain PNUSAS395228 SAMN37953966-rid19947463.guided.17, whole genome shotgun sequence	197..634	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIKK010000011.1 Salmonella enterica strain PNUSAS395228 SAMN37953966-rid19947463.denovo.11, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABOIKK010000014.1 Salmonella enterica strain PNUSAS395228 SAMN37953966-rid19947463.denovo.16, whole genome shotgun sequence	3446..3707																																																avrA	ABOIKK010000003.1	553181..554050	99.54	870	0						
GCA_033024855.1_PDT001953263.1_genomic.fna	Salmonella_enterica	0.5215	492.441 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIKF010000001.1 Salmonella enterica strain PNUSAS395233 SAMN37953950-rid19948693.denovo.01, whole genome shotgun sequence	819642..820079	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIKF010000023.1 Salmonella enterica strain PNUSAS395233 SAMN37953950-rid19948693.guided.20, whole genome shotgun sequence	3314..3751	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIKF010000012.1 Salmonella enterica strain PNUSAS395233 SAMN37953950-rid19948693.denovo.12, whole genome shotgun sequence	40541..41183	enterobacteriales	IncFII(S)	100	262 / 262	ABOIKF010000015.1 Salmonella enterica strain PNUSAS395233 SAMN37953950-rid19948693.denovo.17, whole genome shotgun sequence	3395..3656																																																avrA	ABOIKF010000002.1	553193..554062	99.54	870	0						
GCA_033024875.1_PDT001953259.1_genomic.fna	Salmonella_enterica	0.5223	367.821 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOIKI010000001.1 Salmonella enterica strain PNUSAS395225 SAMN37953954-rid19948663.denovo.01, whole genome shotgun sequence	789131..789568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOIKI010000035.1 Salmonella enterica strain PNUSAS395225 SAMN37953954-rid19948663.guided.24, whole genome shotgun sequence	1783..2220	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIKI010000006.1	94222..95091	98.966	870	0						
GCA_033024895.1_PDT001953257.1_genomic.fna	Salmonella_enterica	0.5193	418.722 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIKJ010000001.1 Salmonella enterica strain PNUSAS395212 SAMN37953980-rid19948653.denovo.01, whole genome shotgun sequence	681077..681514	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIKJ010000020.1 Salmonella enterica strain PNUSAS395212 SAMN37953980-rid19948653.guided.15, whole genome shotgun sequence	769..1206	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033024915.1_PDT001953255.1_genomic.fna	Salmonella_enterica	0.5205	465.786 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIKH010000001.1 Salmonella enterica strain PNUSAS395240 SAMN37953939-rid19948633.denovo.01, whole genome shotgun sequence	563827..564264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIKH010000033.1 Salmonella enterica strain PNUSAS395240 SAMN37953939-rid19948633.guided.23, whole genome shotgun sequence	2134..2571	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIKH010000008.1	140241..141109	99.195	870	0						
GCA_033024935.1_PDT001953252.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIKM010000001.1 Salmonella enterica strain PNUSAS395315 SAMN37953768-rid19948603.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIKM010000026.1 Salmonella enterica strain PNUSAS395315 SAMN37953768-rid19948603.guided.16, whole genome shotgun sequence	10997..11434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIKM010000012.1 Salmonella enterica strain PNUSAS395315 SAMN37953768-rid19948603.denovo.13, whole genome shotgun sequence	22516..23158	enterobacteriales	IncFII(S)	100	262 / 262	ABOIKM010000014.1 Salmonella enterica strain PNUSAS395315 SAMN37953768-rid19948603.denovo.17, whole genome shotgun sequence	3448..3709																																																avrA	ABOIKM010000002.1	553636..554505	99.54	870	0						
GCA_033024955.1_PDT001953265.1_genomic.fna	Salmonella_enterica	0.5209	451.99 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIKO010000001.1 Salmonella enterica strain PNUSAS395205 SAMN37953968-rid19948713.denovo.01, whole genome shotgun sequence	643182..643619	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIKO010000022.1 Salmonella enterica strain PNUSAS395205 SAMN37953968-rid19948713.guided.16, whole genome shotgun sequence	5852..6289	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033024975.1_PDT001953275.1_genomic.fna	Salmonella_enterica	0.5205	342.665 KB	6	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIKN010000001.1 Salmonella enterica strain PNUSAS395234 SAMN37953969-rid19948793.denovo.01, whole genome shotgun sequence	509393..509830	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIKN010000034.1 Salmonella enterica strain PNUSAS395234 SAMN37953969-rid19948793.guided.26, whole genome shotgun sequence	8046..8483	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIKN010000004.1	103036..103904	99.31	870	0						
GCA_033025015.1_PDT001953262.1_genomic.fna	Salmonella_enterica	0.5209	529.294 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIKQ010000001.1 Salmonella enterica strain PNUSAS395226 SAMN37953970-rid19948683.denovo.01, whole genome shotgun sequence	777328..777765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIKQ010000025.1 Salmonella enterica strain PNUSAS395226 SAMN37953970-rid19948683.guided.18, whole genome shotgun sequence	6372..6809	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIKQ010000002.1	559048..559917	99.425	870	0						
GCA_033025025.1_PDT001953270.1_genomic.fna	Salmonella_enterica	0.5212	489.907 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),repUS2	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIKP010000001.1 Salmonella enterica strain PNUSAS395220 SAMN37953973-rid19947483.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIKP010000028.1 Salmonella enterica strain PNUSAS395220 SAMN37953973-rid19947483.guided.17, whole genome shotgun sequence	5786..6223	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIKP010000012.1 Salmonella enterica strain PNUSAS395220 SAMN37953973-rid19947483.denovo.12, whole genome shotgun sequence	48683..49325	enterobacteriales	IncFII(S)	100	262 / 262	ABOIKP010000012.1 Salmonella enterica strain PNUSAS395220 SAMN37953973-rid19947483.denovo.12, whole genome shotgun sequence	4430..4691		NT_Rep	repUS2	98.53	682 / 681	ABOIKP010000022.1 Salmonella enterica strain PNUSAS395220 SAMN37953973-rid19947483.denovo.25, whole genome shotgun sequence	1438..2117	repA(pBI143)																																								avrA	ABOIKP010000002.1	584148..585017	99.54	870	0						
GCA_033025055.1_PDT001953261.1_genomic.fna	Salmonella_enterica	0.518	321.314 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA17,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA17,blaCTX-M-55,blaCTX-M-55,mph(A),lnu(F),mph(A),lnu(F),qnrS1,qnrS1,sul2,sul2,dfrA14,dfrA14	2	gyrA_p.S83Y,parC_p.T57S	3	IncFIA(HI1),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIKR010000001.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.denovo.01, whole genome shotgun sequence	641183..641620	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIKR010000028.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.denovo.31, whole genome shotgun sequence	101..937	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIKR010000028.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.denovo.31, whole genome shotgun sequence	937..1740	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABOIKR010000029.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.denovo.35, whole genome shotgun sequence	1227..2087	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA17	98.86	792/792	ABOIKR010000032.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.denovo.39, whole genome shotgun sequence	448..1239	Spectinomycin, Streptomycin	FJ460181	aac(6')-Iaa	97.95	438/438	ABOIKR010000041.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.guided.22, whole genome shotgun sequence	2789..3226	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIKR010000043.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.guided.32, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIKR010000043.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.guided.32, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABOIKR010000047.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.guided.40, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA17	98.86	792/792	ABOIKR010000048.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.guided.41, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	FJ460181	blaCTX-M-55	100	876/876	ABOIKR010000025.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.denovo.27, whole genome shotgun sequence	6048..6923	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaCTX-M-55	100	876/876	ABOIKR010000042.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.guided.29, whole genome shotgun sequence	1534..2409	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	mph(A)	100	906/906	ABOIKR010000026.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.denovo.28, whole genome shotgun sequence	69..974	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABOIKR010000032.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.denovo.39, whole genome shotgun sequence	1371..2192	Lincomycin	EU118119	mph(A)	100	906/906	ABOIKR010000044.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.guided.33, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABOIKR010000048.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.guided.41, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	qnrS1	100	657/657	ABOIKR010000025.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.denovo.27, whole genome shotgun sequence	751..1407	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOIKR010000045.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.guided.34, whole genome shotgun sequence	1677..2333	Ciprofloxacin	AB187515	sul2	100	816/816	ABOIKR010000028.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.denovo.31, whole genome shotgun sequence	1801..2616	Sulfamethoxazole	FN995456	sul2	100	816/816	ABOIKR010000043.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.guided.32, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	FN995456	dfrA14	100	474/474	ABOIKR010000026.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.denovo.28, whole genome shotgun sequence	4680..5153	Trimethoprim	KF921535	dfrA14	100	474/474	ABOIKR010000049.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.guided.42, whole genome shotgun sequence	57..530	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																														gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIA(HI1)	100	388 / 388	ABOIKR010000013.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.denovo.13, whole genome shotgun sequence	24584..24971	enterobacteriales	IncHI1A	100	420 / 420	ABOIKR010000014.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.denovo.14, whole genome shotgun sequence	81373..81792		enterobacteriales	IncHI1B(R27)	100	540 / 540	ABOIKR010000014.1 Salmonella enterica strain PNUSAS395239 SAMN37953955-rid19948673.denovo.14, whole genome shotgun sequence	67757..68296	R27																																								avrA	ABOIKR010000008.1	100953..101822	98.966	870	0						
GCA_033025075.1_PDT001953258.1_genomic.fna	Salmonella_enterica	0.5216	367.101 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIKU010000001.1 Salmonella enterica strain PNUSAS395227 SAMN37953958-rid19947453.denovo.01, whole genome shotgun sequence	477423..477860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIKU010000030.1 Salmonella enterica strain PNUSAS395227 SAMN37953958-rid19947453.guided.21, whole genome shotgun sequence	2007..2444	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIKU010000014.1	94851..95719	99.195	870	0						
GCA_033025095.1_PDT001953256.1_genomic.fna	Salmonella_enterica	0.521	406.102 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIKT010000001.1 Salmonella enterica strain PNUSAS395243 SAMN37953947-rid19948643.denovo.01, whole genome shotgun sequence	774539..774976	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIKT010000028.1 Salmonella enterica strain PNUSAS395243 SAMN37953947-rid19948643.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	94.81	154 / 154	ABOIKT010000020.1 Salmonella enterica strain PNUSAS395243 SAMN37953947-rid19948643.denovo.23, whole genome shotgun sequence	978..1131	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIKT010000017.1 Salmonella enterica strain PNUSAS395243 SAMN37953947-rid19948643.denovo.19, whole genome shotgun sequence	18090..18732		enterobacteriales	IncFII(S)	100	262 / 262	ABOIKT010000017.1 Salmonella enterica strain PNUSAS395243 SAMN37953947-rid19948643.denovo.19, whole genome shotgun sequence	3446..3707																																									avrA	ABOIKT010000002.1	553432..554301	99.54	870	0						
GCA_033025115.1_PDT001953254.1_genomic.fna	Salmonella_enterica	0.5226	388.714 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOIKV010000003.1 Salmonella enterica strain PNUSAS395214 SAMN37953952-rid19948623.denovo.03, whole genome shotgun sequence	354225..354662	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOIKV010000028.1 Salmonella enterica strain PNUSAS395214 SAMN37953952-rid19948623.guided.22, whole genome shotgun sequence	4890..5327	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIKV010000008.1	131916..132785	98.966	870	0						
GCA_033025135.1_PDT001953253.1_genomic.fna	Salmonella_enterica	0.5192	403.837 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIKX010000001.1 Salmonella enterica strain PNUSAS395182 SAMN37953810-rid19948613.denovo.01, whole genome shotgun sequence	486124..486561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIKX010000034.1 Salmonella enterica strain PNUSAS395182 SAMN37953810-rid19948613.guided.25, whole genome shotgun sequence	12342..12779	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOIKX010000004.1 Salmonella enterica strain PNUSAS395182 SAMN37953810-rid19948613.denovo.04, whole genome shotgun sequence	388906..389328	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOIKX010000033.1 Salmonella enterica strain PNUSAS395182 SAMN37953810-rid19948613.guided.24, whole genome shotgun sequence	13823..14245	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIKX010000002.1	121179..122048	99.195	870	0						
GCA_033025155.1_PDT001953251.1_genomic.fna	Salmonella_enterica	0.5203	476.677 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pSE11)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOIKW010000001.1 Salmonella enterica strain PNUSAS395173 SAMN37953921-rid19948593.denovo.01, whole genome shotgun sequence	477888..478325	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOIKW010000028.1 Salmonella enterica strain PNUSAS395173 SAMN37953921-rid19948593.guided.12, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	93.98	266 / 264	ABOIKW010000014.1 Salmonella enterica strain PNUSAS395173 SAMN37953921-rid19948593.denovo.16, whole genome shotgun sequence	63838..64099																																																						avrA	ABOIKW010000002.1	145182..146051	99.31	870	0						
GCA_033025175.1_PDT001953250.1_genomic.fna	Salmonella_enterica	0.5221	162.189 KB	10	aroC_41,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	2129	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOIKZ010000001.1 Salmonella enterica strain PNUSAS395200 SAMN37953809-rid19947443.denovo.01, whole genome shotgun sequence	371073..371510	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOIKZ010000063.1 Salmonella enterica strain PNUSAS395200 SAMN37953809-rid19947443.guided.40, whole genome shotgun sequence	12326..12763	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033025195.1_PDT001953248.1_genomic.fna	Salmonella_enterica	0.5215	384.178 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOILA010000002.1 Salmonella enterica strain PNUSAS395201 SAMN37953804-rid19947433.denovo.02, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOILA010000037.1 Salmonella enterica strain PNUSAS395201 SAMN37953804-rid19947433.guided.29, whole genome shotgun sequence	319..756	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOILA010000008.1	192506..193374	99.195	870	0						
GCA_033025215.1_PDT001953249.1_genomic.fna	Salmonella_enterica	0.5219	737.677 KB	3	aroC_50,dnaN_10,hemD_25,hisD_72,purE_10,sucA_13,thrA_4	414	9:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Eastbourne		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOILB010000002.1 Salmonella enterica strain PNUSAS395210 SAMN37953935-rid19948583.denovo.02, whole genome shotgun sequence	645693..646130	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOILB010000022.1 Salmonella enterica strain PNUSAS395210 SAMN37953935-rid19948583.guided.17, whole genome shotgun sequence	2951..3388	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOILB010000004.1	94292..95161	99.31	870	0						
GCA_033025235.1_PDT001953247.1_genomic.fna	Salmonella_enterica	0.5213	359.682 KB	6	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38*	95*	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	99.8003992015968	100	thrA_38*	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOIKY010000002.1 Salmonella enterica strain PNUSAS395166 SAMN37953924-rid19948573.denovo.02, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOIKY010000043.1 Salmonella enterica strain PNUSAS395166 SAMN37953924-rid19948573.guided.34, whole genome shotgun sequence	2433..2870	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIKY010000012.1	101941..102810	99.655	870	0						
GCA_033025255.1_PDT001953246.1_genomic.fna	Salmonella_enterica	0.5209	412.066 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOILC010000001.1 Salmonella enterica strain PNUSAS395202 SAMN37953929-rid19948563.denovo.01, whole genome shotgun sequence	385102..385539	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOILC010000046.1 Salmonella enterica strain PNUSAS395202 SAMN37953929-rid19948563.guided.21, whole genome shotgun sequence	5382..5819	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOILC010000002.1	504322..505192	99.196	871	0						
GCA_033025275.1_PDT001953245.1_genomic.fna	Salmonella_enterica	0.5211	682.779 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOILD010000001.1 Salmonella enterica strain PNUSAS395176 SAMN37953927-rid19948553.denovo.01, whole genome shotgun sequence	596623..597060	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOILD010000021.1 Salmonella enterica strain PNUSAS395176 SAMN37953927-rid19948553.guided.12, whole genome shotgun sequence	42414..42851	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOILD010000004.1	544607..545475	99.425	870	0						
GCA_033025295.1_PDT001953243.1_genomic.fna	Salmonella_enterica	0.5209	489.917 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOILE010000001.1 Salmonella enterica strain PNUSAS395217 SAMN37953978-rid19948533.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOILE010000023.1 Salmonella enterica strain PNUSAS395217 SAMN37953978-rid19948533.guided.14, whole genome shotgun sequence	12800..13237	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOILE010000012.1 Salmonella enterica strain PNUSAS395217 SAMN37953978-rid19948533.denovo.12, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOILE010000012.1 Salmonella enterica strain PNUSAS395217 SAMN37953978-rid19948533.denovo.12, whole genome shotgun sequence	4416..4677																																																avrA	ABOILE010000002.1	584148..585017	99.54	870	0						
GCA_033025315.1_PDT001953244.1_genomic.fna	Salmonella_enterica	0.5212	430.367 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOILJ010000001.1 Salmonella enterica strain PNUSAS395162 SAMN37953923-rid19948543.denovo.01, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOILJ010000035.1 Salmonella enterica strain PNUSAS395162 SAMN37953923-rid19948543.guided.26, whole genome shotgun sequence	2443..2880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOILJ010000010.1	93874..94742	99.195	870	0						
GCA_033025335.1_PDT001953242.1_genomic.fna	Salmonella_enterica	0.5217	521.573 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOILK010000001.1 Salmonella enterica strain PNUSAS395301 SAMN37953754-rid19948523.denovo.01, whole genome shotgun sequence	814930..815367	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOILK010000028.1 Salmonella enterica strain PNUSAS395301 SAMN37953754-rid19948523.guided.18, whole genome shotgun sequence	6263..6700	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOILK010000016.1 Salmonella enterica strain PNUSAS395301 SAMN37953754-rid19948523.denovo.19, whole genome shotgun sequence	239..369																																																						avrA	ABOILK010000005.1	140114..140983	99.425	870	0						
GCA_033025355.1_PDT001953241.1_genomic.fna	Salmonella_enterica	0.5228	407.414 KB	4	aroC_22,dnaN_104,hemD_25,hisD_113,purE_12,sucA_83,thrA_4	308	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_25	hisD	100	100	hisD_113	purE	100	100	purE_12	sucA	100	100	sucA_83	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABOILG010000001.1 Salmonella enterica strain PNUSAS395208 SAMN37953959-rid19948513.denovo.01, whole genome shotgun sequence	456235..456672	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABOILG010000030.1 Salmonella enterica strain PNUSAS395208 SAMN37953959-rid19948513.guided.20, whole genome shotgun sequence	1716..2153	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOILG010000003.1	94209..95078	99.655	870	0						
GCA_033025375.1_PDT001953240.1_genomic.fna	Salmonella_enterica	0.5215	372.749 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOILF010000001.1 Salmonella enterica strain PNUSAS395216 SAMN37953979-rid19948503.denovo.01, whole genome shotgun sequence	498154..498591	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOILF010000031.1 Salmonella enterica strain PNUSAS395216 SAMN37953979-rid19948503.guided.20, whole genome shotgun sequence	1654..2091	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOILF010000008.1	140447..141316	99.54	870	0						
GCA_033025395.1_PDT001953238.1_genomic.fna	Salmonella_enterica	0.5209	655.806 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOILI010000001.1 Salmonella enterica strain PNUSAS395164 SAMN37953819-rid19948483.denovo.01, whole genome shotgun sequence	384885..385322	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOILI010000040.1 Salmonella enterica strain PNUSAS395164 SAMN37953819-rid19948483.guided.27, whole genome shotgun sequence	521..958	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOILI010000003.1	504152..505022	99.196	871	0						
GCA_033025415.1_PDT001953239.1_genomic.fna	Salmonella_enterica	0.5206	430.47 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOILH010000001.1 Salmonella enterica strain PNUSAS395165 SAMN37953776-rid19948493.denovo.01, whole genome shotgun sequence	407334..407771	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOILH010000041.1 Salmonella enterica strain PNUSAS395165 SAMN37953776-rid19948493.guided.16, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOILH010000002.1	504317..505187	99.196	871	0						
GCA_033025435.1_PDT001953237.1_genomic.fna	Salmonella_enterica	0.5211	279.77 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aac(6')-Iaa,aadA1,aadA2,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(M),tet(B),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOILL010000001.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOILL010000031.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.denovo.35, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOILL010000031.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.denovo.35, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOILL010000049.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.denovo.60, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOILL010000049.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.denovo.60, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	99.77	438/438	ABOILL010000066.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.33, whole genome shotgun sequence	16118..16555	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOILL010000067.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.34, whole genome shotgun sequence	16118..16555	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	ABOILL010000069.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.42, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aadA2	100	792/792	ABOILL010000070.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.44, whole genome shotgun sequence	560..1351	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	837/837	ABOILL010000074.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.59, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOILL010000074.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.59, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOILL010000047.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.denovo.57, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOILL010000075.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.61, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOILL010000031.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.denovo.35, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOILL010000039.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.denovo.46, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOILL010000069.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.42, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOILL010000070.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.44, whole genome shotgun sequence	1613..2872	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOILL010000073.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.54, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOILL010000076.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.66, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOILL010000077.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.67, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABOILL010000078.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.68, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOILL010000079.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.69, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOILL010000030.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.denovo.32, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOILL010000031.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.denovo.35, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABOILL010000071.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.49, whole genome shotgun sequence	873..2792	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOILL010000072.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.51, whole genome shotgun sequence	1164..2369	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABOILL010000031.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.denovo.35, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABOILL010000068.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.guided.41, whole genome shotgun sequence	3873..4370	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																								enterobacteriales	Col156	94.81	154 / 154	ABOILL010000035.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.denovo.39, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABOILL010000041.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.denovo.48, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABOILL010000048.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.denovo.58, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOILL010000028.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.denovo.29, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOILL010000022.1 Salmonella enterica strain PNUSAS395197 SAMN37953931-rid19948883.denovo.22, whole genome shotgun sequence	55745..56241																											avrA	ABOILL010000002.1	508765..509634	99.885	870	0						
GCA_033025455.1_PDT001953235.1_genomic.fna	Salmonella_enterica	0.5225	396.03 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOILM010000001.1 Salmonella enterica strain PNUSAS395206 SAMN37953961-rid19948873.denovo.01, whole genome shotgun sequence	789131..789568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOILM010000030.1 Salmonella enterica strain PNUSAS395206 SAMN37953961-rid19948873.guided.24, whole genome shotgun sequence	9503..9940	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOILM010000006.1	147872..148741	98.966	870	0						
GCA_033025495.1_PDT001953233.1_genomic.fna	Salmonella_enterica	0.521	518.156 KB	3	aroC_81,dnaN_69,hemD_36,hisD_12,purE_68,sucA_12,thrA_17	203	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX4	aroC	100	100	aroC_81	dnaN	100	100	dnaN_69	hemD	100	100	hemD_36	hisD	100	100	hisD_12	purE	100	100	purE_68	sucA	100	100	sucA_12	thrA	100	100	thrA_17	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOILQ010000001.1 Salmonella enterica strain PNUSAS395186 SAMN37953808-rid19948453.denovo.01, whole genome shotgun sequence	470599..471036	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOILQ010000025.1 Salmonella enterica strain PNUSAS395186 SAMN37953808-rid19948453.guided.19, whole genome shotgun sequence	2394..2831	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX4	98.88	712 / 712	ABOILQ010000013.1 Salmonella enterica strain PNUSAS395186 SAMN37953808-rid19948453.denovo.13, whole genome shotgun sequence	28681..29392																																																						avrA	ABOILQ010000002.1	554251..555120	99.655	870	0						
GCA_033025515.1_PDT001953236.1_genomic.fna	Salmonella_enterica	0.5209	489.863 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOILO010000001.1 Salmonella enterica strain PNUSAS395163 SAMN37953814-rid19948473.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOILO010000022.1 Salmonella enterica strain PNUSAS395163 SAMN37953814-rid19948473.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOILO010000012.1 Salmonella enterica strain PNUSAS395163 SAMN37953814-rid19948473.denovo.14, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABOILO010000015.1 Salmonella enterica strain PNUSAS395163 SAMN37953814-rid19948473.denovo.18, whole genome shotgun sequence	3404..3665																																																avrA	ABOILO010000002.1	553486..554355	99.54	870	0						
GCA_033025535.1_PDT001953232.1_genomic.fna	Salmonella_enterica	0.5211	682.666 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOILP010000001.1 Salmonella enterica strain PNUSAS395196 SAMN37953802-rid19948443.denovo.01, whole genome shotgun sequence	596406..596843	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOILP010000023.1 Salmonella enterica strain PNUSAS395196 SAMN37953802-rid19948443.guided.18, whole genome shotgun sequence	724..1161	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOILP010000004.1	544613..545481	99.425	870	0						
GCA_033025555.1_PDT001953234.1_genomic.fna	Salmonella_enterica	0.521	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOILN010000001.1 Salmonella enterica strain PNUSAS395303 SAMN37953756-rid19948463.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOILN010000023.1 Salmonella enterica strain PNUSAS395303 SAMN37953756-rid19948463.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOILN010000011.1 Salmonella enterica strain PNUSAS395303 SAMN37953756-rid19948463.denovo.13, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	ABOILN010000014.1 Salmonella enterica strain PNUSAS395303 SAMN37953756-rid19948463.denovo.17, whole genome shotgun sequence	3423..3684																																																avrA	ABOILN010000002.1	553636..554505	99.54	870	0						
GCA_033025575.1_PDT001953231.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOILR010000001.1 Salmonella enterica strain PNUSAS395185 SAMN37953818-rid19948433.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOILR010000023.1 Salmonella enterica strain PNUSAS395185 SAMN37953818-rid19948433.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOILR010000012.1 Salmonella enterica strain PNUSAS395185 SAMN37953818-rid19948433.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOILR010000016.1 Salmonella enterica strain PNUSAS395185 SAMN37953818-rid19948433.denovo.19, whole genome shotgun sequence	3436..3697																																																avrA	ABOILR010000002.1	553636..554505	99.54	870	0						
GCA_033025595.1_PDT001953230.1_genomic.fna	Salmonella_enterica	0.5178	397.632 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA17,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(3)-IId,aadA17,blaCTX-M-55,blaCTX-M-55,mph(A),lnu(F),mph(A),lnu(F),qnrS1,qnrS1,sul2,sul2,dfrA14,dfrA14	2	gyrA_p.S83Y,parC_p.T57S	3	IncFIA(HI1),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOILS010000001.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.denovo.01, whole genome shotgun sequence	635193..635630	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOILS010000027.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.denovo.32, whole genome shotgun sequence	101..937	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOILS010000027.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.denovo.32, whole genome shotgun sequence	937..1740	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABOILS010000028.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.denovo.33, whole genome shotgun sequence	1227..2087	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA17	98.86	792/792	ABOILS010000032.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.denovo.38, whole genome shotgun sequence	448..1239	Spectinomycin, Streptomycin	FJ460181	aac(6')-Iaa	97.95	438/438	ABOILS010000042.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.guided.24, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOILS010000046.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.guided.34, whole genome shotgun sequence	2019..2855	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOILS010000046.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.guided.34, whole genome shotgun sequence	1216..2019	Streptomycin	AF321551	aac(3)-IId	99.88	861/861	ABOILS010000047.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.guided.39, whole genome shotgun sequence	183..1043	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin	EU022314	aadA17	98.86	792/792	ABOILS010000048.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.guided.40, whole genome shotgun sequence	47..838	Spectinomycin, Streptomycin	FJ460181	blaCTX-M-55	100	876/876	ABOILS010000024.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.denovo.28, whole genome shotgun sequence	6048..6923	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaCTX-M-55	100	876/876	ABOILS010000044.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.guided.27, whole genome shotgun sequence	1534..2409	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	mph(A)	100	906/906	ABOILS010000025.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.denovo.29, whole genome shotgun sequence	69..974	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABOILS010000032.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.denovo.38, whole genome shotgun sequence	1371..2192	Lincomycin	EU118119	mph(A)	100	906/906	ABOILS010000045.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.guided.30, whole genome shotgun sequence	108..1013	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	lnu(F)	100	822/822	ABOILS010000048.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.guided.40, whole genome shotgun sequence	970..1791	Lincomycin	EU118119	qnrS1	100	657/657	ABOILS010000024.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.denovo.28, whole genome shotgun sequence	751..1407	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOILS010000044.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.guided.27, whole genome shotgun sequence	7050..7706	Ciprofloxacin	AB187515	sul2	100	816/816	ABOILS010000027.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.denovo.32, whole genome shotgun sequence	1801..2616	Sulfamethoxazole	FN995456	sul2	100	816/816	ABOILS010000046.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.guided.34, whole genome shotgun sequence	340..1155	Sulfamethoxazole	FN995456	dfrA14	100	474/474	ABOILS010000025.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.denovo.29, whole genome shotgun sequence	4680..5153	Trimethoprim	KF921535	dfrA14	100	474/474	ABOILS010000045.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.guided.30, whole genome shotgun sequence	4719..5192	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																														gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIA(HI1)	100	388 / 388	ABOILS010000013.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.denovo.13, whole genome shotgun sequence	24584..24971	enterobacteriales	IncHI1A	100	420 / 420	ABOILS010000014.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.denovo.14, whole genome shotgun sequence	81372..81791		enterobacteriales	IncHI1B(R27)	100	540 / 540	ABOILS010000014.1 Salmonella enterica strain PNUSAS395232 SAMN37953975-rid19948423.denovo.14, whole genome shotgun sequence	67756..68295	R27																																								avrA	ABOILS010000008.1	100953..101822	98.966	870	0						
GCA_033025615.1_PDT001953229.1_genomic.fna	Salmonella_enterica	0.5207	655.992 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOILY010000001.1 Salmonella enterica strain PNUSAS395181 SAMN37953807-rid19948413.denovo.01, whole genome shotgun sequence	384845..385282	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOILY010000047.1 Salmonella enterica strain PNUSAS395181 SAMN37953807-rid19948413.guided.15, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOILY010000003.1	504328..505198	99.196	871	0						
GCA_033025635.1_PDT001953227.1_genomic.fna	Salmonella_enterica	0.5211	489.917 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOILU010000001.1 Salmonella enterica strain PNUSAS395229 SAMN37953941-rid19948863.denovo.01, whole genome shotgun sequence	821246..821683	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOILU010000025.1 Salmonella enterica strain PNUSAS395229 SAMN37953941-rid19948863.guided.15, whole genome shotgun sequence	33973..34410	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOILU010000012.1 Salmonella enterica strain PNUSAS395229 SAMN37953941-rid19948863.denovo.13, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	ABOILU010000016.1 Salmonella enterica strain PNUSAS395229 SAMN37953941-rid19948863.denovo.19, whole genome shotgun sequence	3404..3665																																																avrA	ABOILU010000002.1	584148..585017	99.54	870	0						
GCA_033025655.1_PDT001953226.1_genomic.fna	Salmonella_enterica	0.5209	430.239 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOILV010000001.1 Salmonella enterica strain PNUSAS395193 SAMN37953933-rid19948393.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOILV010000049.1 Salmonella enterica strain PNUSAS395193 SAMN37953933-rid19948393.guided.21, whole genome shotgun sequence	8726..9163	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOILV010000010.1	150795..151665	99.196	871	0						
GCA_033025675.1_PDT001953225.1_genomic.fna	Salmonella_enterica	0.5228	599.171 KB	4	aroC_111,dnaN_109,hemD_17,hisD_149,purE_41,sucA_13,thrA_23	451	28:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_109	hemD	100	100	hemD_17	hisD	100	100	hisD_149	purE	100	100	purE_41	sucA	100	100	sucA_13	thrA	100	100	thrA_23	28	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Pomona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOILT010000001.1 Salmonella enterica strain PNUSAS395302 SAMN37953755-rid19948853.denovo.01, whole genome shotgun sequence	620459..620896	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOILT010000026.1 Salmonella enterica strain PNUSAS395302 SAMN37953755-rid19948853.guided.10, whole genome shotgun sequence	44260..44697	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOILT010000003.1	94367..95236	99.54	870	0						
GCA_033025695.1_PDT001953216.1_genomic.fna	Salmonella_enterica	0.5209	489.863 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIMH010000001.1 Salmonella enterica strain PNUSAS395169 SAMN37953812-rid19948303.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIMH010000025.1 Salmonella enterica strain PNUSAS395169 SAMN37953812-rid19948303.guided.14, whole genome shotgun sequence	3106..3543	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIMH010000012.1 Salmonella enterica strain PNUSAS395169 SAMN37953812-rid19948303.denovo.13, whole genome shotgun sequence	40524..41166	enterobacteriales	IncFII(S)	100	262 / 262	ABOIMH010000015.1 Salmonella enterica strain PNUSAS395169 SAMN37953812-rid19948303.denovo.18, whole genome shotgun sequence	3394..3655																																																avrA	ABOIMH010000002.1	553486..554355	99.54	870	0						
GCA_033025715.1_PDT001953222.1_genomic.fna	Salmonella_enterica	0.5194	616.349 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col156,IncI1-I(Alpha),IncI2(Delta)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOILW010000001.1 Salmonella enterica strain PNUSAS395248 SAMN37953953-rid19948363.denovo.01, whole genome shotgun sequence	719027..719464	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOILW010000021.1 Salmonella enterica strain PNUSAS395248 SAMN37953953-rid19948363.guided.16, whole genome shotgun sequence	11087..11524	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	ABOILW010000017.1 Salmonella enterica strain PNUSAS395248 SAMN37953953-rid19948363.denovo.19, whole genome shotgun sequence	816..967	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOILW010000009.1 Salmonella enterica strain PNUSAS395248 SAMN37953953-rid19948363.denovo.09, whole genome shotgun sequence	85892..86033		enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABOILW010000012.1 Salmonella enterica strain PNUSAS395248 SAMN37953953-rid19948363.denovo.12, whole genome shotgun sequence	7741..8062																																									avrA	ABOILW010000002.1	559604..560473	99.425	870	0						
GCA_033025735.1_PDT001953214.1_genomic.fna	Salmonella_enterica	0.5217	501.305 KB	3	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	ColRNAI,IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOIMI010000001.1 Salmonella enterica strain PNUSAS395183 SAMN37953930-rid19948283.denovo.01, whole genome shotgun sequence	750353..750790	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOIMI010000029.1 Salmonella enterica strain PNUSAS395183 SAMN37953930-rid19948283.guided.15, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.91	132 / 130	ABOIMI010000022.1 Salmonella enterica strain PNUSAS395183 SAMN37953930-rid19948283.denovo.25, whole genome shotgun sequence	1545..1675	enterobacteriales	IncFII(p96A)	100	534 / 534	ABOIMI010000013.1 Salmonella enterica strain PNUSAS395183 SAMN37953930-rid19948283.denovo.13, whole genome shotgun sequence	5790..6323																																																avrA	ABOIMI010000003.1	406271..407140	99.54	870	0						
GCA_033025755.1_PDT001953223.1_genomic.fna	Salmonella_enterica	0.521	655.998 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOILZ010000001.1 Salmonella enterica strain PNUSAS395172 SAMN37953803-rid19948373.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOILZ010000047.1 Salmonella enterica strain PNUSAS395172 SAMN37953803-rid19948373.guided.19, whole genome shotgun sequence	2860..3297	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOILZ010000003.1	504334..505204	99.196	871	0						
GCA_033025775.1_PDT001953221.1_genomic.fna	Salmonella_enterica	0.5209	449.561 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIMB010000001.1 Salmonella enterica strain PNUSAS395189 SAMN37953925-rid19948353.denovo.01, whole genome shotgun sequence	643437..643874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIMB010000024.1 Salmonella enterica strain PNUSAS395189 SAMN37953925-rid19948353.guided.14, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033025785.1_PDT001953224.1_genomic.fna	Salmonella_enterica	0.5219	346.372 KB	6	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIMA010000001.1 Salmonella enterica strain PNUSAS395242 SAMN37953937-rid19948383.denovo.01, whole genome shotgun sequence	487321..487758	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIMA010000025.1 Salmonella enterica strain PNUSAS395242 SAMN37953937-rid19948383.denovo.29, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOIMA010000025.1 Salmonella enterica strain PNUSAS395242 SAMN37953937-rid19948383.denovo.29, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOIMA010000025.1 Salmonella enterica strain PNUSAS395242 SAMN37953937-rid19948383.denovo.29, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOIMA010000025.1 Salmonella enterica strain PNUSAS395242 SAMN37953937-rid19948383.denovo.29, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOIMA010000025.1 Salmonella enterica strain PNUSAS395242 SAMN37953937-rid19948383.denovo.29, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOIMA010000036.1 Salmonella enterica strain PNUSAS395242 SAMN37953937-rid19948383.guided.20, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIMA010000039.1 Salmonella enterica strain PNUSAS395242 SAMN37953937-rid19948383.guided.28, whole genome shotgun sequence	2008..2844	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOIMA010000039.1 Salmonella enterica strain PNUSAS395242 SAMN37953937-rid19948383.guided.28, whole genome shotgun sequence	1206..2008	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOIMA010000039.1 Salmonella enterica strain PNUSAS395242 SAMN37953937-rid19948383.guided.28, whole genome shotgun sequence	1205..2008	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOIMA010000039.1 Salmonella enterica strain PNUSAS395242 SAMN37953937-rid19948383.guided.28, whole genome shotgun sequence	1205..2008	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOIMA010000039.1 Salmonella enterica strain PNUSAS395242 SAMN37953937-rid19948383.guided.28, whole genome shotgun sequence	1205..2008	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOIMA010000026.1 Salmonella enterica strain PNUSAS395242 SAMN37953937-rid19948383.denovo.30, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIMA010000040.1 Salmonella enterica strain PNUSAS395242 SAMN37953937-rid19948383.guided.31, whole genome shotgun sequence	906..2105	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	ABOIMA010000028.1 Salmonella enterica strain PNUSAS395242 SAMN37953937-rid19948383.denovo.33, whole genome shotgun sequence	967..1118																																																						avrA	ABOIMA010000002.1	140159..141028	99.655	870	0						
GCA_033025815.1_PDT001953228.1_genomic.fna	Salmonella_enterica	0.5211	282.835 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOILX010000002.1 Salmonella enterica strain PNUSAS395224 SAMN37953977-rid19948403.denovo.02, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	381/438	ABOILX010000044.1 Salmonella enterica strain PNUSAS395224 SAMN37953977-rid19948403.guided.37, whole genome shotgun sequence	1..381	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOILX010000001.1 Salmonella enterica strain PNUSAS395224 SAMN37953977-rid19948403.denovo.01, whole genome shotgun sequence	646453..647658	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOILX010000041.1 Salmonella enterica strain PNUSAS395224 SAMN37953977-rid19948403.guided.26, whole genome shotgun sequence	23060..24265	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOILX010000033.1 Salmonella enterica strain PNUSAS395224 SAMN37953977-rid19948403.denovo.36, whole genome shotgun sequence	186..316																																																						avrA	ABOILX010000001.1	540758..541627	99.885	870	0						
GCA_033025835.1_PDT001953220.1_genomic.fna	Salmonella_enterica	0.5212	420.219 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOIMC010000002.1 Salmonella enterica strain PNUSAS395244 SAMN37953976-rid19948343.denovo.02, whole genome shotgun sequence	223334..223771	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOIMC010000028.1 Salmonella enterica strain PNUSAS395244 SAMN37953976-rid19948343.guided.17, whole genome shotgun sequence	31340..31777	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIMC010000001.1	496818..497686	99.425	870	0						
GCA_033025855.1_PDT001953219.1_genomic.fna	Salmonella_enterica	0.5202	485.847 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pRSB107)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIMD010000001.1 Salmonella enterica strain PNUSAS395170 SAMN37953816-rid19948333.denovo.01, whole genome shotgun sequence	384845..385282	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIMD010000046.1 Salmonella enterica strain PNUSAS395170 SAMN37953816-rid19948333.guided.10, whole genome shotgun sequence	2350..2787	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pRSB107)	96.18	262 / 261	ABOIMD010000013.1 Salmonella enterica strain PNUSAS395170 SAMN37953816-rid19948333.denovo.14, whole genome shotgun sequence	53789..54050																																																						avrA	ABOIMD010000003.1	504322..505192	99.196	871	0						
GCA_033025875.1_PDT001953217.1_genomic.fna	Salmonella_enterica	0.5211	737.881 KB	3	aroC_11,dnaN_10,hemD_25,hisD_42,purE_337,sucA_13,thrA_4	1954	4:e,h:e,n,x	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_42	purE	100	100	purE_337	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOIME010000001.1 Salmonella enterica strain PNUSAS395314 SAMN37953767-rid19948313.denovo.01, whole genome shotgun sequence	642621..643058	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOIME010000025.1 Salmonella enterica strain PNUSAS395314 SAMN37953767-rid19948313.guided.15, whole genome shotgun sequence	13785..14222	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOIME010000017.1 Salmonella enterica strain PNUSAS395314 SAMN37953767-rid19948313.denovo.21, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOIME010000027.1 Salmonella enterica strain PNUSAS395314 SAMN37953767-rid19948313.guided.20, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOIME010000017.1 Salmonella enterica strain PNUSAS395314 SAMN37953767-rid19948313.denovo.21, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOIME010000027.1 Salmonella enterica strain PNUSAS395314 SAMN37953767-rid19948313.guided.20, whole genome shotgun sequence	2334..2464																																																avrA	ABOIME010000004.1	569989..570858	99.54	870	0						
GCA_033025895.1_PDT001953218.1_genomic.fna	Salmonella_enterica	0.5226	725.044 KB	3	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_7,thrA_12	473	8:z10:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIMF010000001.1 Salmonella enterica strain PNUSAS395223 SAMN37953951-rid19948323.denovo.01, whole genome shotgun sequence	1320105..1320542	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOIMF010000019.1 Salmonella enterica strain PNUSAS395223 SAMN37953951-rid19948323.guided.14, whole genome shotgun sequence	13325..13762	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIMF010000003.1	573155..574024	99.655	870	0						
GCA_033025915.1_PDT001953213.1_genomic.fna	Salmonella_enterica	0.5203	402.557 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIMJ010000001.1 Salmonella enterica strain PNUSAS395230 SAMN37953960-rid19947423.denovo.01, whole genome shotgun sequence	606318..606755	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIMJ010000026.1 Salmonella enterica strain PNUSAS395230 SAMN37953960-rid19947423.guided.16, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033025935.1_PDT001953215.1_genomic.fna	Salmonella_enterica	0.522	207.182 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIMG010000009.1 Salmonella enterica strain PNUSAS395168 SAMN37953815-rid19948293.denovo.09, whole genome shotgun sequence	144440..144877	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIMG010000054.1 Salmonella enterica strain PNUSAS395168 SAMN37953815-rid19948293.guided.46, whole genome shotgun sequence	1150..1587	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033025955.1_PDT001953211.1_genomic.fna	Salmonella_enterica	0.5212	351.544 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIMO010000004.1 Salmonella enterica strain PNUSAS395317 SAMN37953770-rid19948263.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIMO010000037.1 Salmonella enterica strain PNUSAS395317 SAMN37953770-rid19948263.guided.26, whole genome shotgun sequence	13194..13631	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOIMO010000015.1 Salmonella enterica strain PNUSAS395317 SAMN37953770-rid19948263.denovo.15, whole genome shotgun sequence	48424..49066	enterobacteriales	IncFII(S)	100	262 / 262	ABOIMO010000015.1 Salmonella enterica strain PNUSAS395317 SAMN37953770-rid19948263.denovo.15, whole genome shotgun sequence	64151..64412																																																avrA	ABOIMO010000001.1	446523..447391	100	869	0						
GCA_033025965.1_PDT001953212.1_genomic.fna	Salmonella_enterica	0.5205	503.417 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOIMK010000002.1 Salmonella enterica strain PNUSAS395188 SAMN37953922-rid19948273.denovo.02, whole genome shotgun sequence	425836..426273	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOIMK010000017.1 Salmonella enterica strain PNUSAS395188 SAMN37953922-rid19948273.guided.09, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIMK010000003.1	149711..150580	99.425	870	0						
GCA_033025995.1_PDT001953210.1_genomic.fna	Salmonella_enterica	0.5212	279.77 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,floR,sul2,sul2,sul2,sul2,tet(M),tet(B),tet(M),tet(B),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIMP010000001.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOIMP010000031.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.denovo.31, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOIMP010000031.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.denovo.31, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOIMP010000052.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.denovo.62, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIMP010000052.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.denovo.62, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOIMP010000063.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.36, whole genome shotgun sequence	7295..7732	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOIMP010000064.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.37, whole genome shotgun sequence	3833..4624	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOIMP010000067.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.49, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	99.88	837/837	ABOIMP010000071.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.60, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIMP010000071.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.60, whole genome shotgun sequence	69..872	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOIMP010000072.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.61, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIMP010000072.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.61, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOIMP010000050.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.denovo.58, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOIMP010000073.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.63, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOIMP010000031.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.denovo.31, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOIMP010000031.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.denovo.31, whole genome shotgun sequence	17356..18569	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOIMP010000064.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.37, whole genome shotgun sequence	4886..6145	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOIMP010000067.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.49, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOIMP010000074.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.64, whole genome shotgun sequence	16..1229	Chloramphenicol, Florfenicol	AF118107	floR	98.02	1214/1215	ABOIMP010000075.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.65, whole genome shotgun sequence	16..1229	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOIMP010000076.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.69, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOIMP010000077.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.70, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABOIMP010000078.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.71, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOIMP010000079.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.72, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(M)	96.15	1920/1920	ABOIMP010000031.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.denovo.31, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOIMP010000033.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.denovo.33, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOIMP010000066.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.42, whole genome shotgun sequence	873..2792	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOIMP010000070.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.57, whole genome shotgun sequence	246..1451	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABOIMP010000031.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.denovo.31, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABOIMP010000064.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.guided.37, whole genome shotgun sequence	2928..3425	Trimethoprim	AM040708																																																																																																																																																																																																																																																																										enterobacteriales	Col156	94.81	154 / 154	ABOIMP010000037.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.denovo.39, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABOIMP010000044.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.denovo.48, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABOIMP010000051.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.denovo.59, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOIMP010000028.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.denovo.28, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOIMP010000022.1 Salmonella enterica strain PNUSAS395190 SAMN37953811-rid19948253.denovo.22, whole genome shotgun sequence	55562..56058																											avrA	ABOIMP010000002.1	508765..509634	99.885	870	0						
GCA_033026015.1_PDT001953209.1_genomic.fna	Salmonella_enterica	0.5226	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIMM010000001.1 Salmonella enterica strain PNUSAS395211 SAMN37953936-rid19948243.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIMM010000024.1 Salmonella enterica strain PNUSAS395211 SAMN37953936-rid19948243.guided.18, whole genome shotgun sequence	189..626	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIMM010000002.1	147026..147895	98.966	870	0						
GCA_033026035.1_PDT001953208.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIML010000001.1 Salmonella enterica strain PNUSAS395175 SAMN37953928-rid19948233.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIML010000028.1 Salmonella enterica strain PNUSAS395175 SAMN37953928-rid19948233.guided.22, whole genome shotgun sequence	657..1094	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABOIML010000020.1 Salmonella enterica strain PNUSAS395175 SAMN37953928-rid19948233.denovo.23, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIML010000012.1 Salmonella enterica strain PNUSAS395175 SAMN37953928-rid19948233.denovo.12, whole genome shotgun sequence	40542..41184		enterobacteriales	IncFII(S)	100	262 / 262	ABOIML010000016.1 Salmonella enterica strain PNUSAS395175 SAMN37953928-rid19948233.denovo.18, whole genome shotgun sequence	3436..3697																																									avrA	ABOIML010000002.1	553636..554505	99.54	870	0						
GCA_033026055.1_PDT001953206.1_genomic.fna	Salmonella_enterica	0.52	153.963 KB	10	aroC_110,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2711	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_110	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOIMQ010000001.1 Salmonella enterica strain PNUSAS395171 SAMN37953805-rid19948213.denovo.01, whole genome shotgun sequence	42643..43080	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOIMQ010000062.1 Salmonella enterica strain PNUSAS395171 SAMN37953805-rid19948213.guided.28, whole genome shotgun sequence	16470..16907	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOIMQ010000036.1 Salmonella enterica strain PNUSAS395171 SAMN37953805-rid19948213.denovo.38, whole genome shotgun sequence	27576..28218																																																																	
GCA_033026075.1_PDT001953207.1_genomic.fna	Salmonella_enterica	0.5143	364.503 KB	5	aroC_56,dnaN_24,hemD_28,hisD_24,purE_357,sucA_86,thrA_79	Unknown	48:g,z51:-	0		1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_56	dnaN	100	100	dnaN_24	hemD	100	100	hemD_28	hisD	100	100	hisD_24	purE	100	100	purE_357	sucA	100	100	sucA_86	thrA	100	100	thrA_79	48	g,z51	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 48:g,z51:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABOIMN010000019.1 Salmonella enterica strain PNUSAS395213 SAMN37953962-rid19948223.denovo.20, whole genome shotgun sequence	10425..10686																																																																	
GCA_033026095.1_PDT001953205.1_genomic.fna	Salmonella_enterica	0.5216	377.351 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIMS010000002.1 Salmonella enterica strain PNUSAS395179 SAMN37953817-rid19948203.denovo.02, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIMS010000035.1 Salmonella enterica strain PNUSAS395179 SAMN37953817-rid19948203.guided.21, whole genome shotgun sequence	41172..41609	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOIMS010000015.1 Salmonella enterica strain PNUSAS395179 SAMN37953817-rid19948203.denovo.15, whole genome shotgun sequence	48443..49085	enterobacteriales	IncFII(S)	100	262 / 262	ABOIMS010000015.1 Salmonella enterica strain PNUSAS395179 SAMN37953817-rid19948203.denovo.15, whole genome shotgun sequence	64170..64431																																																avrA	ABOIMS010000001.1	452167..453036	99.885	870	0						
GCA_033026115.1_PDT001953204.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIMR010000001.1 Salmonella enterica strain PNUSAS395247 SAMN37953956-rid19948193.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIMR010000029.1 Salmonella enterica strain PNUSAS395247 SAMN37953956-rid19948193.guided.20, whole genome shotgun sequence	6793..7230	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIMR010000013.1 Salmonella enterica strain PNUSAS395247 SAMN37953956-rid19948193.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOIMR010000013.1 Salmonella enterica strain PNUSAS395247 SAMN37953956-rid19948193.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABOIMR010000002.1	505767..506636	99.54	870	0						
GCA_033026135.1_PDT001953203.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIMU010000001.1 Salmonella enterica strain PNUSAS395316 SAMN37953769-rid19947413.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIMU010000025.1 Salmonella enterica strain PNUSAS395316 SAMN37953769-rid19947413.guided.16, whole genome shotgun sequence	4130..4567	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIMU010000011.1 Salmonella enterica strain PNUSAS395316 SAMN37953769-rid19947413.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOIMU010000015.1 Salmonella enterica strain PNUSAS395316 SAMN37953769-rid19947413.denovo.18, whole genome shotgun sequence	3402..3663																																																avrA	ABOIMU010000002.1	553636..554505	99.54	870	0						
GCA_033026155.1_PDT001953202.1_genomic.fna	Salmonella_enterica	0.5218	527.836 KB	3	aroC_197,dnaN_532,hemD_15,hisD_115,purE_132,sucA_46,thrA_553	3997	4:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_197	dnaN	100	100	dnaN_532	hemD	100	100	hemD_15	hisD	100	100	hisD_115	purE	100	100	purE_132	sucA	100	100	sucA_46	thrA	100	100	thrA_553	4	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Hato		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIMT010000001.1 Salmonella enterica strain PNUSAS395237 SAMN37953957-rid19948183.denovo.01, whole genome shotgun sequence	651170..651607	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOIMT010000023.1 Salmonella enterica strain PNUSAS395237 SAMN37953957-rid19948183.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIMT010000002.1	95488..96357	99.54	870	0						
GCA_033026175.1_PDT001953201.1_genomic.fna	Salmonella_enterica	0.5207	362.922 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOIMW010000001.1 Salmonella enterica strain PNUSAS395218 SAMN37953974-rid19948173.denovo.01, whole genome shotgun sequence	302243..302680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOIMW010000048.1 Salmonella enterica strain PNUSAS395218 SAMN37953974-rid19948173.guided.33, whole genome shotgun sequence	2899..3336	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOIMW010000020.1 Salmonella enterica strain PNUSAS395218 SAMN37953974-rid19948173.denovo.20, whole genome shotgun sequence	7072..7714	enterobacteriales	IncFII	95.02	261 / 261	ABOIMW010000016.1 Salmonella enterica strain PNUSAS395218 SAMN37953974-rid19948173.denovo.16, whole genome shotgun sequence	58255..58513																																																											
GCA_033026195.1_PDT001953200.1_genomic.fna	Salmonella_enterica	0.5203	485.962 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pRSB107)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIMV010000001.1 Salmonella enterica strain PNUSAS395187 SAMN37953926-rid19948163.denovo.01, whole genome shotgun sequence	384845..385282	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIMV010000044.1 Salmonella enterica strain PNUSAS395187 SAMN37953926-rid19948163.guided.10, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pRSB107)	96.18	262 / 261	ABOIMV010000013.1 Salmonella enterica strain PNUSAS395187 SAMN37953926-rid19948163.denovo.14, whole genome shotgun sequence	53789..54050																																																						avrA	ABOIMV010000003.1	504322..505192	99.196	871	0						
GCA_033026215.1_PDT001953199.1_genomic.fna	Salmonella_enterica	0.5185	520.981 KB	3	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOIMY010000001.1 Salmonella enterica strain PNUSAS395184 SAMN37953801-rid19948153.denovo.01, whole genome shotgun sequence	173319..173756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOIMY010000031.1 Salmonella enterica strain PNUSAS395184 SAMN37953801-rid19948153.guided.09, whole genome shotgun sequence	16450..16887	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOIMY010000019.1 Salmonella enterica strain PNUSAS395184 SAMN37953801-rid19948153.denovo.23, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOIMY010000034.1 Salmonella enterica strain PNUSAS395184 SAMN37953801-rid19948153.guided.22, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOIMY010000019.1 Salmonella enterica strain PNUSAS395184 SAMN37953801-rid19948153.denovo.23, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOIMY010000034.1 Salmonella enterica strain PNUSAS395184 SAMN37953801-rid19948153.guided.22, whole genome shotgun sequence	2044..2174																																																avrA	ABOIMY010000002.1	572908..573777	99.425	870	0						
GCA_033026235.1_PDT001953197.1_genomic.fna	Salmonella_enterica	0.5208	683.898 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOINA010000001.1 Salmonella enterica strain PNUSAS395167 SAMN37953806-rid19948133.denovo.01, whole genome shotgun sequence	596592..597029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOINA010000022.1 Salmonella enterica strain PNUSAS395167 SAMN37953806-rid19948133.guided.13, whole genome shotgun sequence	31517..31954	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOINA010000002.1	544607..545475	99.425	870	0						
GCA_033026255.1_PDT001953198.1_genomic.fna	Salmonella_enterica	0.5216	423.864 KB	4	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIMX010000001.1 Salmonella enterica strain PNUSAS395207 SAMN37953940-rid19948143.denovo.01, whole genome shotgun sequence	540538..540975	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIMX010000022.1 Salmonella enterica strain PNUSAS395207 SAMN37953940-rid19948143.guided.19, whole genome shotgun sequence	10156..10593	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOIMX010000015.1 Salmonella enterica strain PNUSAS395207 SAMN37953940-rid19948143.denovo.15, whole genome shotgun sequence	14509..15042																																																						avrA	ABOIMX010000005.1	149727..150596	98.966	870	0						
GCA_033026275.1_PDT001953196.1_genomic.fna	Salmonella_enterica	0.5214	703.5 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOIMZ010000001.1 Salmonella enterica strain PNUSAS395219 SAMN37953946-rid19948123.denovo.01, whole genome shotgun sequence	408804..409241	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOIMZ010000024.1 Salmonella enterica strain PNUSAS395219 SAMN37953946-rid19948123.guided.18, whole genome shotgun sequence	10516..10953	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIMZ010000003.1	528997..529865	99.425	870	0						
GCA_033026315.1_PDT001953194.1_genomic.fna	Salmonella_enterica	0.522	737.5 KB	3	aroC_50,dnaN_10,hemD_25,hisD_72,purE_10,sucA_13,thrA_4	414	9:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Eastbourne		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOINC010000002.1 Salmonella enterica strain PNUSAS395245 SAMN37953963-rid19948103.denovo.02, whole genome shotgun sequence	645696..646133	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOINC010000022.1 Salmonella enterica strain PNUSAS395245 SAMN37953963-rid19948103.guided.18, whole genome shotgun sequence	2883..3320	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOINC010000004.1	94292..95161	99.31	870	0						
GCA_033026355.1_PDT001953192.1_genomic.fna	Salmonella_enterica	0.5225	568.742 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOING010000001.1 Salmonella enterica strain PNUSAS395238 SAMN37953938-rid19948093.denovo.01, whole genome shotgun sequence	693326..693763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOING010000031.1 Salmonella enterica strain PNUSAS395238 SAMN37953938-rid19948093.guided.20, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABOING010000016.1 Salmonella enterica strain PNUSAS395238 SAMN37953938-rid19948093.denovo.16, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOING010000030.1 Salmonella enterica strain PNUSAS395238 SAMN37953938-rid19948093.guided.19, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOING010000016.1 Salmonella enterica strain PNUSAS395238 SAMN37953938-rid19948093.denovo.16, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOING010000032.1 Salmonella enterica strain PNUSAS395238 SAMN37953938-rid19948093.guided.24, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOING010000016.1 Salmonella enterica strain PNUSAS395238 SAMN37953938-rid19948093.denovo.16, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABOING010000030.1 Salmonella enterica strain PNUSAS395238 SAMN37953938-rid19948093.guided.19, whole genome shotgun sequence	6325..7164	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOING010000016.1 Salmonella enterica strain PNUSAS395238 SAMN37953938-rid19948093.denovo.16, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOING010000030.1 Salmonella enterica strain PNUSAS395238 SAMN37953938-rid19948093.guided.19, whole genome shotgun sequence	9840..11114	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOING010000016.1 Salmonella enterica strain PNUSAS395238 SAMN37953938-rid19948093.denovo.16, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABOING010000030.1 Salmonella enterica strain PNUSAS395238 SAMN37953938-rid19948093.guided.19, whole genome shotgun sequence	8209..8682	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOING010000015.1 Salmonella enterica strain PNUSAS395238 SAMN37953938-rid19948093.denovo.15, whole genome shotgun sequence	4434..4684																																																						avrA	ABOING010000002.1	553473..554342	99.77	870	0						
GCA_033026375.1_PDT001953191.1_genomic.fna	Salmonella_enterica	0.5212	455.616 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIND010000005.1 Salmonella enterica strain PNUSAS395195 SAMN37953932-rid19948083.denovo.05, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIND010000029.1 Salmonella enterica strain PNUSAS395195 SAMN37953932-rid19948083.guided.27, whole genome shotgun sequence	352..789	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIND010000014.1 Salmonella enterica strain PNUSAS395195 SAMN37953932-rid19948083.denovo.14, whole genome shotgun sequence	40545..41187	enterobacteriales	IncFII(S)	100	262 / 262	ABOIND010000019.1 Salmonella enterica strain PNUSAS395195 SAMN37953932-rid19948083.denovo.19, whole genome shotgun sequence	3392..3653																																																avrA	ABOIND010000001.1	585348..586217	99.54	870	0						
GCA_033026405.1_PDT001953195.1_genomic.fna	Salmonella_enterica	0.5206	490.014 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOINE010000001.1 Salmonella enterica strain PNUSAS395192 SAMN37953813-rid19948113.denovo.01, whole genome shotgun sequence	815011..815448	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABOINE010000015.1 Salmonella enterica strain PNUSAS395192 SAMN37953813-rid19948113.denovo.16, whole genome shotgun sequence	5485..6315	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABOINE010000015.1 Salmonella enterica strain PNUSAS395192 SAMN37953813-rid19948113.denovo.16, whole genome shotgun sequence	6321..7124	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABOINE010000024.1 Salmonella enterica strain PNUSAS395192 SAMN37953813-rid19948113.guided.11, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABOINE010000027.1 Salmonella enterica strain PNUSAS395192 SAMN37953813-rid19948113.guided.20, whole genome shotgun sequence	5239..6069	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABOINE010000027.1 Salmonella enterica strain PNUSAS395192 SAMN37953813-rid19948113.guided.20, whole genome shotgun sequence	4430..5233	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOINE010000015.1 Salmonella enterica strain PNUSAS395192 SAMN37953813-rid19948113.denovo.16, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOINE010000028.1 Salmonella enterica strain PNUSAS395192 SAMN37953813-rid19948113.guided.23, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOINE010000015.1 Salmonella enterica strain PNUSAS395192 SAMN37953813-rid19948113.denovo.16, whole genome shotgun sequence	7185..8000	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOINE010000027.1 Salmonella enterica strain PNUSAS395192 SAMN37953813-rid19948113.guided.20, whole genome shotgun sequence	3554..4369	Sulfamethoxazole	AY034138																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOINE010000012.1 Salmonella enterica strain PNUSAS395192 SAMN37953813-rid19948113.denovo.13, whole genome shotgun sequence	32997..33639	enterobacteriales	IncFII(S)	100	262 / 262	ABOINE010000016.1 Salmonella enterica strain PNUSAS395192 SAMN37953813-rid19948113.denovo.18, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	95.76	377 / 377	ABOINE010000015.1 Salmonella enterica strain PNUSAS395192 SAMN37953813-rid19948113.denovo.16, whole genome shotgun sequence	18289..18665																																									avrA	ABOINE010000002.1	553355..554224	99.54	870	0						
GCA_033026425.1_PDT001953193.1_genomic.fna	Salmonella_enterica	0.5209	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOINB010000001.1 Salmonella enterica strain PNUSAS395291 SAMN37953744-rid19947403.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOINB010000022.1 Salmonella enterica strain PNUSAS395291 SAMN37953744-rid19947403.guided.13, whole genome shotgun sequence	4947..5384	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOINB010000011.1 Salmonella enterica strain PNUSAS395291 SAMN37953744-rid19947403.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOINB010000011.1 Salmonella enterica strain PNUSAS395291 SAMN37953744-rid19947403.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABOINB010000002.1	553636..554505	99.54	870	0						
GCA_033026455.1_PDT001953190.1_genomic.fna	Salmonella_enterica	0.5217	430.367 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOINF010000001.1 Salmonella enterica strain PNUSAS395177 SAMN37953934-rid19948073.denovo.01, whole genome shotgun sequence	644019..644456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.59	425/438	ABOINF010000028.1 Salmonella enterica strain PNUSAS395177 SAMN37953934-rid19948073.guided.23, whole genome shotgun sequence	1..425	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOINF010000003.1	514966..515834	99.195	870	0						
GCA_033026495.1_PDT001953189.1_genomic.fna	Salmonella_enterica	0.5209	640.452 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABOINH010000001.1 Salmonella enterica strain PNUSAS395198 SAMN37953778-rid19948063.denovo.01, whole genome shotgun sequence	643477..643914	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABOINH010000021.1 Salmonella enterica strain PNUSAS395198 SAMN37953778-rid19948063.guided.07, whole genome shotgun sequence	41004..41441	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOINH010000003.1	95200..96068	99.425	870	0						
GCA_033026515.1_PDT001953186.1_genomic.fna	Salmonella_enterica	0.5222	397.319 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOINK010000001.1 Salmonella enterica strain PNUSAS395318 SAMN37953771-rid19948033.denovo.01, whole genome shotgun sequence	396198..396635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOINK010000030.1 Salmonella enterica strain PNUSAS395318 SAMN37953771-rid19948033.guided.19, whole genome shotgun sequence	18132..18569	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033026535.1_PDT001953185.1_genomic.fna	Salmonella_enterica	0.5217	240.45 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOINM010000002.1 Salmonella enterica strain PNUSAS395180 SAMN37953772-rid19948023.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOINM010000046.1 Salmonella enterica strain PNUSAS395180 SAMN37953772-rid19948023.guided.26, whole genome shotgun sequence	15749..16186	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOINM010000017.1 Salmonella enterica strain PNUSAS395180 SAMN37953772-rid19948023.denovo.17, whole genome shotgun sequence	48047..48689	enterobacteriales	IncFII(S)	100	262 / 262	ABOINM010000017.1 Salmonella enterica strain PNUSAS395180 SAMN37953772-rid19948023.denovo.17, whole genome shotgun sequence	63774..64035																																																avrA	ABOINM010000006.1	94140..95008	100	869	0						
GCA_033026555.1_PDT001953188.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOINJ010000001.1 Salmonella enterica strain PNUSAS395312 SAMN37953765-rid19948053.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOINJ010000023.1 Salmonella enterica strain PNUSAS395312 SAMN37953765-rid19948053.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOINJ010000011.1 Salmonella enterica strain PNUSAS395312 SAMN37953765-rid19948053.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOINJ010000015.1 Salmonella enterica strain PNUSAS395312 SAMN37953765-rid19948053.denovo.18, whole genome shotgun sequence	3405..3666																																																avrA	ABOINJ010000002.1	553636..554505	99.54	870	0						
GCA_033026585.1_PDT001953187.1_genomic.fna	Salmonella_enterica	0.5211	699.692 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOINI010000001.1 Salmonella enterica strain PNUSAS395191 SAMN37953774-rid19948043.denovo.01, whole genome shotgun sequence	510590..511027	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOINI010000021.1 Salmonella enterica strain PNUSAS395191 SAMN37953774-rid19948043.guided.12, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOINI010000002.1	544607..545475	99.425	870	0						
GCA_033026625.1_PDT001953184.1_genomic.fna	Salmonella_enterica	0.5215	347.445 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOINL010000003.1 Salmonella enterica strain PNUSAS395304 SAMN37953757-rid19948013.denovo.03, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOINL010000038.1 Salmonella enterica strain PNUSAS395304 SAMN37953757-rid19948013.guided.20, whole genome shotgun sequence	34160..34597	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOINL010000016.1 Salmonella enterica strain PNUSAS395304 SAMN37953757-rid19948013.denovo.16, whole genome shotgun sequence	14681..15323	enterobacteriales	IncFII(S)	100	262 / 262	ABOINL010000016.1 Salmonella enterica strain PNUSAS395304 SAMN37953757-rid19948013.denovo.16, whole genome shotgun sequence	30408..30669																																																avrA	ABOINL010000004.1	209589..210457	100	869	0						
GCA_033026645.1_PDT001953182.1_genomic.fna	Salmonella_enterica	0.5206	489.789 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOINO010000001.1 Salmonella enterica strain PNUSAS395308 SAMN37953761-rid19948003.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOINO010000031.1 Salmonella enterica strain PNUSAS395308 SAMN37953761-rid19948003.guided.17, whole genome shotgun sequence	26447..26884	Amikacin, Tobramycin	NC_003197	tet(A)	99.92	1200/1200	ABOINO010000019.1 Salmonella enterica strain PNUSAS395308 SAMN37953761-rid19948003.denovo.22, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOINO010000033.1 Salmonella enterica strain PNUSAS395308 SAMN37953761-rid19948003.guided.23, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOINO010000013.1 Salmonella enterica strain PNUSAS395308 SAMN37953761-rid19948003.denovo.14, whole genome shotgun sequence	9142..9784	enterobacteriales	IncFII(S)	100	262 / 262	ABOINO010000013.1 Salmonella enterica strain PNUSAS395308 SAMN37953761-rid19948003.denovo.14, whole genome shotgun sequence	53776..54037		enterobacteriales	IncX1	95.76	377 / 377	ABOINO010000014.1 Salmonella enterica strain PNUSAS395308 SAMN37953761-rid19948003.denovo.15, whole genome shotgun sequence	4749..5125																																									avrA	ABOINO010000002.1	553068..553937	99.54	870	0						
GCA_033026665.1_PDT001953183.1_genomic.fna	Salmonella_enterica	0.52	489.747 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOINN010000001.1 Salmonella enterica strain PNUSAS395305 SAMN37953758-rid19947393.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOINN010000022.1 Salmonella enterica strain PNUSAS395305 SAMN37953758-rid19947393.guided.13, whole genome shotgun sequence	26878..27315	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOINN010000011.1 Salmonella enterica strain PNUSAS395305 SAMN37953758-rid19947393.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOINN010000015.1 Salmonella enterica strain PNUSAS395305 SAMN37953758-rid19947393.denovo.18, whole genome shotgun sequence	3408..3669		enterobacteriales	IncX1	98.66	374 / 374	ABOINN010000012.1 Salmonella enterica strain PNUSAS395305 SAMN37953758-rid19947393.denovo.14, whole genome shotgun sequence	6956..7329																																									avrA	ABOINN010000002.1	553205..554074	99.54	870	0						
GCA_033026685.1_PDT001953181.1_genomic.fna	Salmonella_enterica	0.5231	437.761 KB	4	aroC_46,dnaN_54,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	127	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_54	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOINP010000001.1 Salmonella enterica strain PNUSAS395199 SAMN37953779-rid19947993.denovo.01, whole genome shotgun sequence	667536..667973	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOINP010000026.1 Salmonella enterica strain PNUSAS395199 SAMN37953779-rid19947993.guided.14, whole genome shotgun sequence	42403..42840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOINP010000002.1	508933..509802	99.31	870	0						
GCA_033026705.1_PDT001953180.1_genomic.fna	Salmonella_enterica	0.522	513.952 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pHCM2)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOINQ010000001.1 Salmonella enterica strain PNUSAS395310 SAMN37953763-rid19948843.denovo.01, whole genome shotgun sequence	929980..930417	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOINQ010000022.1 Salmonella enterica strain PNUSAS395310 SAMN37953763-rid19948843.guided.17, whole genome shotgun sequence	5848..6285	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	98.63	875 / 875	ABOINQ010000010.1 Salmonella enterica strain PNUSAS395310 SAMN37953763-rid19948843.denovo.10, whole genome shotgun sequence	12149..13023																																																						avrA	ABOINQ010000002.1	563351..564219	99.655	870	0						
GCA_033026735.1_PDT001953179.1_genomic.fna	Salmonella_enterica	0.5215	699.69 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOINS010000001.1 Salmonella enterica strain PNUSAS395194 SAMN37953777-rid19947983.denovo.01, whole genome shotgun sequence	545567..546004	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOINS010000018.1 Salmonella enterica strain PNUSAS395194 SAMN37953777-rid19947983.guided.15, whole genome shotgun sequence	14046..14483	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOINS010000002.1	544404..545272	99.425	870	0						
GCA_033026755.1_PDT001953178.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOINR010000001.1 Salmonella enterica strain PNUSAS395306 SAMN37953759-rid19947973.denovo.01, whole genome shotgun sequence	774151..774588	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOINR010000026.1 Salmonella enterica strain PNUSAS395306 SAMN37953759-rid19947973.guided.14, whole genome shotgun sequence	886..1323	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOINR010000013.1 Salmonella enterica strain PNUSAS395306 SAMN37953759-rid19947973.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOINR010000017.1 Salmonella enterica strain PNUSAS395306 SAMN37953759-rid19947973.denovo.20, whole genome shotgun sequence	3388..3649																																																avrA	ABOINR010000002.1	553635..554504	99.54	870	0						
GCA_033026775.1_PDT001953177.1_genomic.fna	Salmonella_enterica	0.5208	466.204 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOINT010000001.1 Salmonella enterica strain PNUSAS395174 SAMN37953773-rid19947963.denovo.01, whole genome shotgun sequence	384606..385043	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOINT010000051.1 Salmonella enterica strain PNUSAS395174 SAMN37953773-rid19947963.guided.24, whole genome shotgun sequence	3799..4236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOINT010000009.1	93870..94740	99.196	871	0						
GCA_033026795.1_PDT001953176.1_genomic.fna	Salmonella_enterica	0.521	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOINU010000001.1 Salmonella enterica strain PNUSAS395313 SAMN37953766-rid19947953.denovo.01, whole genome shotgun sequence	774151..774588	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOINU010000022.1 Salmonella enterica strain PNUSAS395313 SAMN37953766-rid19947953.guided.14, whole genome shotgun sequence	6633..7070	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOINU010000011.1 Salmonella enterica strain PNUSAS395313 SAMN37953766-rid19947953.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOINU010000014.1 Salmonella enterica strain PNUSAS395313 SAMN37953766-rid19947953.denovo.17, whole genome shotgun sequence	3352..3613																																																avrA	ABOINU010000002.1	553635..554504	99.54	870	0						
GCA_033026815.1_PDT001953175.1_genomic.fna	Salmonella_enterica	0.5213	300.108 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOINV010000001.1 Salmonella enterica strain PNUSAS395307 SAMN37953760-rid19947943.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOINV010000044.1 Salmonella enterica strain PNUSAS395307 SAMN37953760-rid19947943.guided.30, whole genome shotgun sequence	929..1366	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOINV010000016.1 Salmonella enterica strain PNUSAS395307 SAMN37953760-rid19947943.denovo.16, whole genome shotgun sequence	48423..49065	enterobacteriales	IncFII(S)	100	262 / 262	ABOINV010000016.1 Salmonella enterica strain PNUSAS395307 SAMN37953760-rid19947943.denovo.16, whole genome shotgun sequence	64150..64411																																																avrA	ABOINV010000004.1	175000..175869	99.885	870	0						
GCA_033026835.1_PDT001953173.1_genomic.fna	Salmonella_enterica	0.5211	529.425 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOINX010000001.1 Salmonella enterica strain PNUSAS395311 SAMN37953764-rid19947383.denovo.01, whole genome shotgun sequence	779768..780205	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOINX010000022.1 Salmonella enterica strain PNUSAS395311 SAMN37953764-rid19947383.guided.13, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOINX010000014.1 Salmonella enterica strain PNUSAS395311 SAMN37953764-rid19947383.denovo.17, whole genome shotgun sequence	239..369																																																						avrA	ABOINX010000002.1	561201..562070	99.425	870	0						
GCA_033026855.1_PDT001953174.1_genomic.fna	Salmonella_enterica	0.5207	466.665 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOINW010000001.1 Salmonella enterica strain PNUSAS395178 SAMN37953775-rid19947933.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOINW010000046.1 Salmonella enterica strain PNUSAS395178 SAMN37953775-rid19947933.guided.18, whole genome shotgun sequence	22278..22715	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOINW010000008.1	37257..38127	99.196	871	0						
GCA_033026875.1_PDT001953172.1_genomic.fna	Salmonella_enterica	0.5209	478.777 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOINY010000001.1 Salmonella enterica strain PNUSAS395309 SAMN37953762-rid19947923.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOINY010000024.1 Salmonella enterica strain PNUSAS395309 SAMN37953762-rid19947923.guided.12, whole genome shotgun sequence	5823..6260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOINY010000011.1 Salmonella enterica strain PNUSAS395309 SAMN37953762-rid19947923.denovo.13, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABOINY010000015.1 Salmonella enterica strain PNUSAS395309 SAMN37953762-rid19947923.denovo.18, whole genome shotgun sequence	3225..3486																																																avrA	ABOINY010000002.1	553636..554505	99.54	870	0						
GCA_033026895.1_PDT001953170.1_genomic.fna	Salmonella_enterica	0.5225	761.786 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIOA010000001.1 Salmonella enterica strain PNUSAS395294 SAMN37953747-rid19947903.denovo.01, whole genome shotgun sequence	481928..482365	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOIOA010000018.1 Salmonella enterica strain PNUSAS395294 SAMN37953747-rid19947903.guided.16, whole genome shotgun sequence	295..732	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIOA010000005.1	151320..152189	99.77	870	0						
GCA_033026915.1_PDT001953171.1_genomic.fna	Salmonella_enterica	0.5227	332.888 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOINZ010000001.1 Salmonella enterica strain PNUSAS395297 SAMN37953750-rid19947913.denovo.01, whole genome shotgun sequence	573967..574404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOINZ010000036.1 Salmonella enterica strain PNUSAS395297 SAMN37953750-rid19947913.guided.28, whole genome shotgun sequence	2909..3346	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOINZ010000002.1	149828..150697	99.655	870	0						
GCA_033026935.1_PDT001953168.1_genomic.fna	Salmonella_enterica	0.521	401.721 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIOE010000004.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.denovo.04, whole genome shotgun sequence	159453..159890	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIOE010000019.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.denovo.20, whole genome shotgun sequence	31733..32569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIOE010000019.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.denovo.20, whole genome shotgun sequence	30930..31733	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOIOE010000030.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.denovo.37, whole genome shotgun sequence	137..952	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	aac(6')-Iaa	98.63	438/438	ABOIOE010000040.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.guided.24, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIOE010000042.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.guided.27, whole genome shotgun sequence	3877..4713	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIOE010000042.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.guided.27, whole genome shotgun sequence	3074..3877	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOIOE010000045.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.guided.36, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	blaCMY-2	100	1146/1146	ABOIOE010000019.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.denovo.20, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOIOE010000044.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.guided.34, whole genome shotgun sequence	66..1211	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOIOE010000019.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.denovo.20, whole genome shotgun sequence	35705..36918	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOIOE010000043.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.guided.33, whole genome shotgun sequence	545..1758	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOIOE010000019.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.denovo.20, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOIOE010000042.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.guided.27, whole genome shotgun sequence	2198..3013	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOIOE010000019.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.denovo.20, whole genome shotgun sequence	33830..35104	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOIOE010000042.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.guided.27, whole genome shotgun sequence	5974..7248	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABOIOE010000021.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.denovo.22, whole genome shotgun sequence	1729..2145	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOIOE010000015.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.denovo.16, whole genome shotgun sequence	29768..30027		enterobacteriales	IncX1	98.66	374 / 374	ABOIOE010000015.1 Salmonella enterica strain PNUSAS395299 SAMN37953752-rid19947883.denovo.16, whole genome shotgun sequence	65621..65994																																									avrA	ABOIOE010000008.1	173551..174419	99.54	870	0						
GCA_033026955.1_PDT001953169.1_genomic.fna	Salmonella_enterica	0.5218	348.753 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIOB010000003.1 Salmonella enterica strain PNUSAS395292 SAMN37953745-rid19947893.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.74	392/438	ABOIOB010000040.1 Salmonella enterica strain PNUSAS395292 SAMN37953745-rid19947893.guided.33, whole genome shotgun sequence	1..392	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOIOB010000016.1 Salmonella enterica strain PNUSAS395292 SAMN37953745-rid19947893.denovo.16, whole genome shotgun sequence	44751..45393	enterobacteriales	IncFII(S)	100	262 / 262	ABOIOB010000016.1 Salmonella enterica strain PNUSAS395292 SAMN37953745-rid19947893.denovo.16, whole genome shotgun sequence	29405..29666																																																avrA	ABOIOB010000006.1	174541..175409	100	869	0						
GCA_033026965.1_PDT001953167.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIOC010000001.1 Salmonella enterica strain PNUSAS395296 SAMN37953749-rid19947873.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIOC010000022.1 Salmonella enterica strain PNUSAS395296 SAMN37953749-rid19947873.guided.14, whole genome shotgun sequence	5538..5975	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIOC010000011.1 Salmonella enterica strain PNUSAS395296 SAMN37953749-rid19947873.denovo.11, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	ABOIOC010000015.1 Salmonella enterica strain PNUSAS395296 SAMN37953749-rid19947873.denovo.18, whole genome shotgun sequence	3392..3653																																																avrA	ABOIOC010000002.1	553636..554505	99.54	870	0						
GCA_033026995.1_PDT001953166.1_genomic.fna	Salmonella_enterica	0.5199	391.749 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIOD010000001.1 Salmonella enterica strain PNUSAS395298 SAMN37953751-rid19947863.denovo.01, whole genome shotgun sequence	563828..564265	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIOD010000034.1 Salmonella enterica strain PNUSAS395298 SAMN37953751-rid19947863.guided.25, whole genome shotgun sequence	2553..2990	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIOD010000011.1	140193..141061	99.195	870	0						
GCA_033027015.1_PDT001953165.1_genomic.fna	Salmonella_enterica	0.522	476.676 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_535,sucA_39,thrA_42	2371	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_535	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIOF010000002.1 Salmonella enterica strain PNUSAS395295 SAMN37953748-rid19947853.denovo.02, whole genome shotgun sequence	524563..525000	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIOF010000023.1 Salmonella enterica strain PNUSAS395295 SAMN37953748-rid19947853.guided.18, whole genome shotgun sequence	2511..2948	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIOF010000009.1	151371..152240	99.195	870	0						
GCA_033027035.1_PDT001953164.1_genomic.fna	Salmonella_enterica	0.5215	526.134 KB	3	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIOG010000001.1 Salmonella enterica strain PNUSAS395293 SAMN37953746-rid19947843.denovo.01, whole genome shotgun sequence	1310581..1311018	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIOG010000029.1 Salmonella enterica strain PNUSAS395293 SAMN37953746-rid19947843.guided.24, whole genome shotgun sequence	63..500	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIOG010000002.1	407672..408541	99.425	870	0						
GCA_033027055.1_PDT001953163.1_genomic.fna	Salmonella_enterica	0.5207	222.564 KB	7	aroC_10,dnaN_7!,dnaN_7!,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	Unknown	4:i:1,2	3	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,sul1,sul1	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7!	dnaN	100	100	dnaN_7!	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIOH010000003.1 Salmonella enterica strain PNUSAS395300 SAMN37953753-rid19947373.denovo.03, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOIOH010000015.1 Salmonella enterica strain PNUSAS395300 SAMN37953753-rid19947373.denovo.15, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABOIOH010000043.1 Salmonella enterica strain PNUSAS395300 SAMN37953753-rid19947373.guided.27, whole genome shotgun sequence	36798..37577	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABOIOH010000046.1 Salmonella enterica strain PNUSAS395300 SAMN37953753-rid19947373.guided.33, whole genome shotgun sequence	2868..3305	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABOIOH010000015.1 Salmonella enterica strain PNUSAS395300 SAMN37953753-rid19947373.denovo.15, whole genome shotgun sequence	60117..60956	Sulfamethoxazole	U12338	sul1	100	840/840	ABOIOH010000043.1 Salmonella enterica strain PNUSAS395300 SAMN37953753-rid19947373.guided.27, whole genome shotgun sequence	38082..38921	Sulfamethoxazole	U12338																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFIB(S)	100	643 / 643	ABOIOH010000018.1 Salmonella enterica strain PNUSAS395300 SAMN37953753-rid19947373.denovo.18, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOIOH010000018.1 Salmonella enterica strain PNUSAS395300 SAMN37953753-rid19947373.denovo.18, whole genome shotgun sequence	30407..30668																																																avrA	ABOIOH010000001.1	507887..508756	99.885	870	0						
GCA_033027075.1_PDT001953162.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIOI010000001.1 Salmonella enterica strain PNUSAS395288 SAMN37953741-rid19947833.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIOI010000027.1 Salmonella enterica strain PNUSAS395288 SAMN37953741-rid19947833.guided.19, whole genome shotgun sequence	2544..2981	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIOI010000012.1 Salmonella enterica strain PNUSAS395288 SAMN37953741-rid19947833.denovo.13, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOIOI010000016.1 Salmonella enterica strain PNUSAS395288 SAMN37953741-rid19947833.denovo.18, whole genome shotgun sequence	3415..3676																																																avrA	ABOIOI010000002.1	553643..554512	99.54	870	0						
GCA_033027095.1_PDT001953161.1_genomic.fna	Salmonella_enterica	0.5193	302.824 KB	6	aroC_3,dnaN_3!,dnaN_3!,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	Unknown	4:f,g,s:-	5	aac(6')-Iaa,aadA7,aadA7,aac(6')-Iaa,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3!	dnaN	100	100	dnaN_3!	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIOJ010000001.1 Salmonella enterica strain PNUSAS395289 SAMN37953742-rid19947823.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aadA7	99	798/798	ABOIOJ010000012.1 Salmonella enterica strain PNUSAS395289 SAMN37953742-rid19947823.denovo.12, whole genome shotgun sequence	55419..56216	Spectinomycin, Streptomycin	AF224733	aadA7	99	798/798	ABOIOJ010000055.1 Salmonella enterica strain PNUSAS395289 SAMN37953742-rid19947823.guided.23, whole genome shotgun sequence	47710..48507	Spectinomycin, Streptomycin	AF224733	aac(6')-Iaa	97.95	438/438	ABOIOJ010000056.1 Salmonella enterica strain PNUSAS395289 SAMN37953742-rid19947823.guided.26, whole genome shotgun sequence	6981..7418	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOIOJ010000005.1 Salmonella enterica strain PNUSAS395289 SAMN37953742-rid19947823.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOIOJ010000057.1 Salmonella enterica strain PNUSAS395289 SAMN37953742-rid19947823.guided.33, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABOIOJ010000012.1 Salmonella enterica strain PNUSAS395289 SAMN37953742-rid19947823.denovo.12, whole genome shotgun sequence	56721..57560	Sulfamethoxazole	U12338	sul1	100	840/840	ABOIOJ010000055.1 Salmonella enterica strain PNUSAS395289 SAMN37953742-rid19947823.guided.23, whole genome shotgun sequence	49012..49851	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOIOJ010000012.1 Salmonella enterica strain PNUSAS395289 SAMN37953742-rid19947823.denovo.12, whole genome shotgun sequence	66856..68055	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIOJ010000059.1 Salmonella enterica strain PNUSAS395289 SAMN37953742-rid19947823.guided.37, whole genome shotgun sequence	3931..5130	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIOJ010000002.1	67021..67890	99.195	870	0						
GCA_033027115.1_PDT001953160.1_genomic.fna	Salmonella_enterica	0.5216	273.328 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,sul2,sul2,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIOL010000015.1 Salmonella enterica strain PNUSAS395290 SAMN37953743-rid19948833.denovo.15, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIOL010000047.1 Salmonella enterica strain PNUSAS395290 SAMN37953743-rid19948833.guided.35, whole genome shotgun sequence	914..1351	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOIOL010000014.1 Salmonella enterica strain PNUSAS395290 SAMN37953743-rid19948833.denovo.14, whole genome shotgun sequence	80500..81360	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOIOL010000046.1 Salmonella enterica strain PNUSAS395290 SAMN37953743-rid19948833.guided.34, whole genome shotgun sequence	121..981	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOIOL010000014.1 Salmonella enterica strain PNUSAS395290 SAMN37953743-rid19948833.denovo.14, whole genome shotgun sequence	74862..75677	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOIOL010000046.1 Salmonella enterica strain PNUSAS395290 SAMN37953743-rid19948833.guided.34, whole genome shotgun sequence	5804..6619	Sulfamethoxazole	AY034138	dfrA1	99.79	474/474	ABOIOL010000014.1 Salmonella enterica strain PNUSAS395290 SAMN37953743-rid19948833.denovo.14, whole genome shotgun sequence	81904..82377	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABOIOL010000014.1 Salmonella enterica strain PNUSAS395290 SAMN37953743-rid19948833.denovo.14, whole genome shotgun sequence	81904..82377	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABOIOL010000014.1 Salmonella enterica strain PNUSAS395290 SAMN37953743-rid19948833.denovo.14, whole genome shotgun sequence	81904..82377	Trimethoprim	X00926	dfrA1	99.79	474/474	ABOIOL010000049.1 Salmonella enterica strain PNUSAS395290 SAMN37953743-rid19948833.guided.38, whole genome shotgun sequence	5501..5974	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABOIOL010000049.1 Salmonella enterica strain PNUSAS395290 SAMN37953743-rid19948833.guided.38, whole genome shotgun sequence	5501..5974	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABOIOL010000049.1 Salmonella enterica strain PNUSAS395290 SAMN37953743-rid19948833.guided.38, whole genome shotgun sequence	5501..5974	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncFIB(S)	100	643 / 643	ABOIOL010000016.1 Salmonella enterica strain PNUSAS395290 SAMN37953743-rid19948833.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOIOL010000016.1 Salmonella enterica strain PNUSAS395290 SAMN37953743-rid19948833.denovo.16, whole genome shotgun sequence	30407..30668		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOIOL010000014.1 Salmonella enterica strain PNUSAS395290 SAMN37953743-rid19948833.denovo.14, whole genome shotgun sequence	90875..91016																																									avrA	ABOIOL010000005.1	175008..175876	100	869	0						
GCA_033027135.1_PDT001953158.1_genomic.fna	Salmonella_enterica	0.5219	375.424 KB	5	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA7,aac(3)-Id,aph(3')-Ia,aac(6')-Iaa,aadA7,aac(3)-Id,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCTX-M-14b,blaCTX-M-14b,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87G,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIOM010000001.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.denovo.01, whole genome shotgun sequence	627852..628289	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIOM010000025.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.denovo.28, whole genome shotgun sequence	15961..16797	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIOM010000025.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.denovo.28, whole genome shotgun sequence	16797..17600	Streptomycin	AF321551	aadA7	100	798/798	ABOIOM010000025.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.denovo.28, whole genome shotgun sequence	1822..2619	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	ABOIOM010000025.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.denovo.28, whole genome shotgun sequence	1270..1746	Gentamicin, Astromicin, Fortimicin	AB114632	aph(3')-Ia	100	816/816	ABOIOM010000030.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.denovo.37, whole genome shotgun sequence	129..944	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	X62115	aac(6')-Iaa	98.63	438/438	ABOIOM010000036.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.guided.24, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	ABOIOM010000039.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.guided.29, whole genome shotgun sequence	1863..2660	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	ABOIOM010000039.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.guided.29, whole genome shotgun sequence	1311..1787	Gentamicin, Astromicin, Fortimicin	AB114632	aph(6)-Id	100	837/837	ABOIOM010000040.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.guided.30, whole genome shotgun sequence	2105..2941	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIOM010000040.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.guided.30, whole genome shotgun sequence	1302..2105	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOIOM010000042.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.guided.36, whole genome shotgun sequence	106..921	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	X62115	blaCTX-M-14b	100	876/876	ABOIOM010000006.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.denovo.06, whole genome shotgun sequence	319731..320606	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ359215	blaCTX-M-14b	100	876/876	ABOIOM010000041.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.guided.33, whole genome shotgun sequence	2814..3689	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ359215	sul1	100	840/840	ABOIOM010000025.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.denovo.28, whole genome shotgun sequence	3124..3963	Sulfamethoxazole	U12338	sul1	100	840/840	ABOIOM010000039.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.guided.29, whole genome shotgun sequence	3165..4004	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOIOM010000025.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.denovo.28, whole genome shotgun sequence	11022..12221	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIOM010000039.1 Salmonella enterica strain PNUSAS395268 SAMN37953713-rid19947803.guided.29, whole genome shotgun sequence	11063..12262	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	ABOIOM010000004.1	410819..411688	99.31	870	0						
GCA_033027155.1_PDT001953159.1_genomic.fna	Salmonella_enterica	0.5211	192.08 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIOK010000006.1 Salmonella enterica strain PNUSAS395272 SAMN37953715-rid19947813.denovo.06, whole genome shotgun sequence	145193..145630	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIOK010000053.1 Salmonella enterica strain PNUSAS395272 SAMN37953715-rid19947813.guided.31, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABOIOK010000041.1 Salmonella enterica strain PNUSAS395272 SAMN37953715-rid19947813.denovo.44, whole genome shotgun sequence	483..636																																																						avrA	ABOIOK010000004.1	184076..184944	99.77	870	0						
GCA_033027175.1_PDT001953157.1_genomic.fna	Salmonella_enterica	0.5222	298.971 KB	6	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOION010000003.1 Salmonella enterica strain PNUSAS395269 SAMN37953714-rid19947793.denovo.03, whole genome shotgun sequence	169694..170131	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOION010000037.1 Salmonella enterica strain PNUSAS395269 SAMN37953714-rid19947793.guided.26, whole genome shotgun sequence	17046..17483	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033027195.1_PDT001953156.1_genomic.fna	Salmonella_enterica	0.521	298.959 KB	7	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIOO010000006.1 Salmonella enterica strain PNUSAS395270 SAMN37953716-rid19947783.denovo.06, whole genome shotgun sequence	165715..166152	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIOO010000056.1 Salmonella enterica strain PNUSAS395270 SAMN37953716-rid19947783.guided.37, whole genome shotgun sequence	6047..6484	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIOO010000021.1	39471..40339	99.195	870	0						
GCA_033027255.1_PDT001953155.1_genomic.fna	Salmonella_enterica	0.5217	444.505 KB	4	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA7,aac(3)-Id,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA7,aac(3)-Id,aph(3')-Ia,blaCTX-M-14b,blaCTX-M-14b,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87G,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIOR010000001.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.denovo.01, whole genome shotgun sequence	627823..628260	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIOR010000021.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.denovo.23, whole genome shotgun sequence	15961..16797	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIOR010000021.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.denovo.23, whole genome shotgun sequence	16797..17600	Streptomycin	AF321551	aadA7	100	798/798	ABOIOR010000021.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.denovo.23, whole genome shotgun sequence	1822..2619	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	ABOIOR010000021.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.denovo.23, whole genome shotgun sequence	1270..1746	Gentamicin, Astromicin, Fortimicin	AB114632	aph(3')-Ia	100	816/816	ABOIOR010000026.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.denovo.33, whole genome shotgun sequence	129..944	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aac(6')-Iaa	98.63	438/438	ABOIOR010000041.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.guided.21, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIOR010000043.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.guided.25, whole genome shotgun sequence	8933..9769	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIOR010000043.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.guided.25, whole genome shotgun sequence	9769..10572	Streptomycin	AF321551	aadA7	100	798/798	ABOIOR010000044.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.guided.26, whole genome shotgun sequence	1863..2660	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	ABOIOR010000044.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.guided.26, whole genome shotgun sequence	1311..1787	Gentamicin, Astromicin, Fortimicin	AB114632	aph(3')-Ia	100	816/816	ABOIOR010000046.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.guided.32, whole genome shotgun sequence	106..921	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	blaCTX-M-14b	100	876/876	ABOIOR010000003.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.denovo.03, whole genome shotgun sequence	444854..445729	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ359215	blaCTX-M-14b	100	876/876	ABOIOR010000045.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.guided.30, whole genome shotgun sequence	2814..3689	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ359215	sul1	100	840/840	ABOIOR010000021.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.denovo.23, whole genome shotgun sequence	3124..3963	Sulfamethoxazole	U12338	sul1	100	840/840	ABOIOR010000044.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.guided.26, whole genome shotgun sequence	3165..4004	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOIOR010000021.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.denovo.23, whole genome shotgun sequence	11022..12221	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIOR010000043.1 Salmonella enterica strain PNUSAS395271 SAMN37953717-rid19947773.guided.25, whole genome shotgun sequence	3994..5193	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	ABOIOR010000002.1	410758..411627	99.31	870	0						
GCA_033027295.1_PDT001953148.1_genomic.fna	Salmonella_enterica	0.5211	299.55 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIOV010000001.1 Salmonella enterica strain PNUSAS395264 SAMN37953204-rid19947723.denovo.01, whole genome shotgun sequence	519287..519724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIOV010000038.1 Salmonella enterica strain PNUSAS395264 SAMN37953204-rid19947723.guided.27, whole genome shotgun sequence	7731..8168	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIOV010000010.1	150671..151539	99.195	870	0						
GCA_033027355.1_PDT001953147.1_genomic.fna	Salmonella_enterica	0.5211	321.66 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440II,IncFII(29)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIOW010000001.1 Salmonella enterica strain PNUSAS395267 SAMN37953214-rid19947713.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIOW010000042.1 Salmonella enterica strain PNUSAS395267 SAMN37953214-rid19947713.guided.30, whole genome shotgun sequence	1761..2198	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440II	97.16	282 / 282	ABOIOW010000030.1 Salmonella enterica strain PNUSAS395267 SAMN37953214-rid19947713.denovo.33, whole genome shotgun sequence	2796..3077	enterobacteriales	IncFII(29)	99.61	259 / 259	ABOIOW010000020.1 Salmonella enterica strain PNUSAS395267 SAMN37953214-rid19947713.denovo.20, whole genome shotgun sequence	23955..24213																																																avrA	ABOIOW010000018.1	39348..40218	99.196	871	0						
GCA_033027375.1_PDT001953146.1_genomic.fna	Salmonella_enterica	0.521	223.054 KB	7	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIOY010000001.1 Salmonella enterica strain PNUSAS395263 SAMN37953203-rid19947703.denovo.01, whole genome shotgun sequence	145179..145616	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIOY010000054.1 Salmonella enterica strain PNUSAS395263 SAMN37953203-rid19947703.guided.35, whole genome shotgun sequence	56..493	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOIOY010000017.1 Salmonella enterica strain PNUSAS395263 SAMN37953203-rid19947703.denovo.17, whole genome shotgun sequence	68507..69149	enterobacteriales	IncFII(S)	100	262 / 262	ABOIOY010000017.1 Salmonella enterica strain PNUSAS395263 SAMN37953203-rid19947703.denovo.17, whole genome shotgun sequence	84234..84495																																																avrA	ABOIOY010000007.1	39460..40329	99.885	870	0						
GCA_033027395.1_PDT001953145.1_genomic.fna	Salmonella_enterica	0.5207	267.971 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	ColRNAI	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIOX010000001.1 Salmonella enterica strain PNUSAS376980 SAMN37953398-rid19947693.denovo.01, whole genome shotgun sequence	145237..145674	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIOX010000040.1 Salmonella enterica strain PNUSAS376980 SAMN37953398-rid19947693.denovo.45, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIOX010000040.1 Salmonella enterica strain PNUSAS376980 SAMN37953398-rid19947693.denovo.45, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOIOX010000070.1 Salmonella enterica strain PNUSAS376980 SAMN37953398-rid19947693.guided.17, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIOX010000074.1 Salmonella enterica strain PNUSAS376980 SAMN37953398-rid19947693.guided.44, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIOX010000074.1 Salmonella enterica strain PNUSAS376980 SAMN37953398-rid19947693.guided.44, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOIOX010000044.1 Salmonella enterica strain PNUSAS376980 SAMN37953398-rid19947693.denovo.50, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOIOX010000075.1 Salmonella enterica strain PNUSAS376980 SAMN37953398-rid19947693.guided.49, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOIOX010000040.1 Salmonella enterica strain PNUSAS376980 SAMN37953398-rid19947693.denovo.45, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOIOX010000074.1 Salmonella enterica strain PNUSAS376980 SAMN37953398-rid19947693.guided.44, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOIOX010000032.1 Salmonella enterica strain PNUSAS376980 SAMN37953398-rid19947693.denovo.36, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOIOX010000073.1 Salmonella enterica strain PNUSAS376980 SAMN37953398-rid19947693.guided.35, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	ColRNAI	90.08	131 / 130	ABOIOX010000039.1 Salmonella enterica strain PNUSAS376980 SAMN37953398-rid19947693.denovo.43, whole genome shotgun sequence	3981..4111																																																						avrA	ABOIOX010000007.1	93863..94732	99.885	870	0						
GCA_033027405.1_PDT001953143.1_genomic.fna	Salmonella_enterica	0.5213	172.141 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIPC010000002.1 Salmonella enterica strain PNUSAS395265 SAMN37953212-rid19947673.denovo.02, whole genome shotgun sequence	162035..162472	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOIPC010000028.1 Salmonella enterica strain PNUSAS395265 SAMN37953212-rid19947673.denovo.28, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABOIPC010000073.1 Salmonella enterica strain PNUSAS395265 SAMN37953212-rid19947673.guided.55, whole genome shotgun sequence	3908..4345	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOIPC010000076.1 Salmonella enterica strain PNUSAS395265 SAMN37953212-rid19947673.guided.70, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOIPC010000062.1 Salmonella enterica strain PNUSAS395265 SAMN37953212-rid19947673.denovo.68, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOIPC010000075.1 Salmonella enterica strain PNUSAS395265 SAMN37953212-rid19947673.guided.66, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABOIPC010000047.1 Salmonella enterica strain PNUSAS395265 SAMN37953212-rid19947673.denovo.50, whole genome shotgun sequence	5127..6341	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABOIPC010000072.1 Salmonella enterica strain PNUSAS395265 SAMN37953212-rid19947673.guided.49, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOIPC010000074.1 Salmonella enterica strain PNUSAS395265 SAMN37953212-rid19947673.guided.60, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABOIPC010000047.1 Salmonella enterica strain PNUSAS395265 SAMN37953212-rid19947673.denovo.50, whole genome shotgun sequence	3015..4190	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABOIPC010000072.1 Salmonella enterica strain PNUSAS395265 SAMN37953212-rid19947673.guided.49, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	IncFIB(S)	100	643 / 643	ABOIPC010000021.1 Salmonella enterica strain PNUSAS395265 SAMN37953212-rid19947673.denovo.21, whole genome shotgun sequence	36050..36692	enterobacteriales	IncFII(S)	100	262 / 262	ABOIPC010000021.1 Salmonella enterica strain PNUSAS395265 SAMN37953212-rid19947673.denovo.21, whole genome shotgun sequence	51777..52038																																																avrA	ABOIPC010000015.1	39348..40217	99.885	870	0						
GCA_033027435.1_PDT001953144.1_genomic.fna	Salmonella_enterica	0.5222	335.858 KB	5	aroC_112,dnaN_105,hemD_3,hisD_98,purE_111,sucA_115,thrA_108	309	4:z:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_112	dnaN	100	100	dnaN_105	hemD	100	100	hemD_3	hisD	100	100	hisD_98	purE	100	100	purE_111	sucA	100	100	sucA_115	thrA	100	100	thrA_108	4	z	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kiambu		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOIOZ010000001.1 Salmonella enterica strain PNUSAS395266 SAMN37953213-rid19947683.denovo.01, whole genome shotgun sequence	269985..270422	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOIOZ010000039.1 Salmonella enterica strain PNUSAS395266 SAMN37953213-rid19947683.guided.22, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033027475.1_PDT001953140.1_genomic.fna	Salmonella_enterica	0.521	400.257 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOIPB010000001.1 Salmonella enterica strain PNUSAS395119 SAMN37952259-rid19947643.denovo.01, whole genome shotgun sequence	255152..255589	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOIPB010000043.1 Salmonella enterica strain PNUSAS395119 SAMN37952259-rid19947643.guided.17, whole genome shotgun sequence	41724..42161	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIPB010000002.1	497983..498851	99.425	870	0						
GCA_033027495.1_PDT001953138.1_genomic.fna	Salmonella_enterica	0.5215	280.92 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_105	3631	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_105	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIPE010000001.1 Salmonella enterica strain PNUSAS395120 SAMN37952257-rid19947353.denovo.01, whole genome shotgun sequence	458353..458790	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIPE010000050.1 Salmonella enterica strain PNUSAS395120 SAMN37952257-rid19947353.guided.36, whole genome shotgun sequence	2278..2715	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOIPE010000027.1 Salmonella enterica strain PNUSAS395120 SAMN37952257-rid19947353.denovo.27, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABOIPE010000027.1 Salmonella enterica strain PNUSAS395120 SAMN37952257-rid19947353.denovo.27, whole genome shotgun sequence	9325..9586																																																avrA	ABOIPE010000006.1	98011..98880	99.885	870	0						
GCA_033027515.1_PDT001953139.1_genomic.fna	Salmonella_enterica	0.5219	429.968 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIPD010000001.1 Salmonella enterica strain PNUSAS395114 SAMN37952255-rid19947633.denovo.01, whole genome shotgun sequence	477386..477823	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIPD010000028.1 Salmonella enterica strain PNUSAS395114 SAMN37952255-rid19947633.guided.20, whole genome shotgun sequence	19944..20381	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIPD010000014.1	95199..96069	99.196	871	0						
GCA_033027535.1_PDT001953137.1_genomic.fna	Salmonella_enterica	0.5214	183.906 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIPH010000001.1 Salmonella enterica strain PNUSAS395116 SAMN37952256-rid19947623.denovo.01, whole genome shotgun sequence	575032..575469	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOIPH010000030.1 Salmonella enterica strain PNUSAS395116 SAMN37952256-rid19947623.denovo.32, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIPH010000030.1 Salmonella enterica strain PNUSAS395116 SAMN37952256-rid19947623.denovo.32, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOIPH010000040.1 Salmonella enterica strain PNUSAS395116 SAMN37952256-rid19947623.denovo.46, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOIPH010000040.1 Salmonella enterica strain PNUSAS395116 SAMN37952256-rid19947623.denovo.46, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOIPH010000062.1 Salmonella enterica strain PNUSAS395116 SAMN37952256-rid19947623.guided.43, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOIPH010000063.1 Salmonella enterica strain PNUSAS395116 SAMN37952256-rid19947623.guided.44, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIPH010000063.1 Salmonella enterica strain PNUSAS395116 SAMN37952256-rid19947623.guided.44, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOIPH010000064.1 Salmonella enterica strain PNUSAS395116 SAMN37952256-rid19947623.guided.45, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOIPH010000064.1 Salmonella enterica strain PNUSAS395116 SAMN37952256-rid19947623.guided.45, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABOIPH010000030.1 Salmonella enterica strain PNUSAS395116 SAMN37952256-rid19947623.denovo.32, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOIPH010000063.1 Salmonella enterica strain PNUSAS395116 SAMN37952256-rid19947623.guided.44, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOIPH010000030.1 Salmonella enterica strain PNUSAS395116 SAMN37952256-rid19947623.denovo.32, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIPH010000061.1 Salmonella enterica strain PNUSAS395116 SAMN37952256-rid19947623.guided.35, whole genome shotgun sequence	7055..8254	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOIPH010000034.1 Salmonella enterica strain PNUSAS395116 SAMN37952256-rid19947623.denovo.37, whole genome shotgun sequence	9109..9668																																																						avrA	ABOIPH010000010.1	39526..40395	99.655	870	0						
GCA_033027575.1_PDT001953136.1_genomic.fna	Salmonella_enterica	0.5205	386.754 KB	3	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIPF010000001.1 Salmonella enterica strain PNUSAS395115 SAMN37952269-rid19947343.denovo.01, whole genome shotgun sequence	624551..624988	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIPF010000029.1 Salmonella enterica strain PNUSAS395115 SAMN37952269-rid19947343.guided.21, whole genome shotgun sequence	8093..8530	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033027595.1_PDT001953132.1_genomic.fna	Salmonella_enterica	0.5213	489.665 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIPJ010000001.1 Salmonella enterica strain PNUSAS395121 SAMN37952261-rid19947583.denovo.01, whole genome shotgun sequence	293258..293695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIPJ010000030.1 Salmonella enterica strain PNUSAS395121 SAMN37952261-rid19947583.guided.20, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIPJ010000019.1 Salmonella enterica strain PNUSAS395121 SAMN37952261-rid19947583.denovo.22, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABOIPJ010000016.1 Salmonella enterica strain PNUSAS395121 SAMN37952261-rid19947583.denovo.16, whole genome shotgun sequence	3859..4120																																																avrA	ABOIPJ010000002.1	584463..585332	99.54	870	0						
GCA_033027615.1_PDT001953131.1_genomic.fna	Salmonella_enterica	0.5205	162.8 KB	9	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOIPK010000009.1 Salmonella enterica strain PNUSAS395118 SAMN37952260-rid19947573.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOIPK010000059.1 Salmonella enterica strain PNUSAS395118 SAMN37952260-rid19947573.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033027675.1_PDT001953129.1_genomic.fna	Salmonella_enterica	0.5224	270.797 KB	6	aroC_114,dnaN_3,hemD_8,hisD_114,purE_76,sucA_9,thrA_109	312	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncFII(S),IncFII(SARC14)	aroC	100	100	aroC_114	dnaN	100	100	dnaN_3	hemD	100	100	hemD_8	hisD	100	100	hisD_114	purE	100	100	purE_76	sucA	100	100	sucA_9	thrA	100	100	thrA_109	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIPM010000001.1 Salmonella enterica strain PNUSAS395117 SAMN37952258-rid19947553.denovo.01, whole genome shotgun sequence	578397..578834	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIPM010000051.1 Salmonella enterica strain PNUSAS395117 SAMN37952258-rid19947553.guided.33, whole genome shotgun sequence	5334..5771	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.08	131 / 131	ABOIPM010000035.1 Salmonella enterica strain PNUSAS395117 SAMN37952258-rid19947553.denovo.38, whole genome shotgun sequence	2063..2193	enterobacteriales	IncFII(S)	93.63	251 / 262	ABOIPM010000017.1 Salmonella enterica strain PNUSAS395117 SAMN37952258-rid19947553.denovo.17, whole genome shotgun sequence	33664..33911		enterobacteriales	IncFII(SARC14)	95.07	446 / 445	ABOIPM010000017.1 Salmonella enterica strain PNUSAS395117 SAMN37952258-rid19947553.denovo.17, whole genome shotgun sequence	34171..34615																																									avrA	ABOIPM010000002.1	96474..97343	99.08	870	0						
GCA_033027695.1_PDT001953120.1_genomic.fna	Salmonella_enterica	0.522	395.587 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOIPO010000001.1 Salmonella enterica strain PNUSAS395095 SAMN37950006-rid19947313.denovo.01, whole genome shotgun sequence	831064..831501	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOIPO010000029.1 Salmonella enterica strain PNUSAS395095 SAMN37950006-rid19947313.guided.20, whole genome shotgun sequence	10439..10876	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIPO010000002.1	168373..169242	98.966	870	0						
GCA_033027835.1_PDT001953101.1_genomic.fna	Salmonella_enterica	0.5212	223.174 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIPU010000002.1 Salmonella enterica strain PNUSAS395094 SAMN37950008-rid19947223.denovo.02, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIPU010000051.1 Salmonella enterica strain PNUSAS395094 SAMN37950008-rid19947223.guided.35, whole genome shotgun sequence	7812..8249	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIPU010000007.1	154652..155520	99.77	870	0						
GCA_033027855.1_PDT001953096.1_genomic.fna	Salmonella_enterica	0.5216	228.05 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIPV010000001.1 Salmonella enterica strain PNUSAS395098 SAMN37950003-rid19947193.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIPV010000049.1 Salmonella enterica strain PNUSAS395098 SAMN37950003-rid19947193.guided.36, whole genome shotgun sequence	4830..5267	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOIPV010000025.1 Salmonella enterica strain PNUSAS395098 SAMN37950003-rid19947193.denovo.25, whole genome shotgun sequence	44755..45397	enterobacteriales	IncFII(S)	100	262 / 262	ABOIPV010000025.1 Salmonella enterica strain PNUSAS395098 SAMN37950003-rid19947193.denovo.25, whole genome shotgun sequence	29409..29670																																																avrA	ABOIPV010000006.1	97953..98821	100	869	0						
GCA_033027875.1_PDT001953099.1_genomic.fna	Salmonella_enterica	0.5214	406.327 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIPW010000001.1 Salmonella enterica strain PNUSAS395099 SAMN37950007-rid19946793.denovo.01, whole genome shotgun sequence	774368..774805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIPW010000027.1 Salmonella enterica strain PNUSAS395099 SAMN37950007-rid19946793.guided.20, whole genome shotgun sequence	3994..4431	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIPW010000017.1 Salmonella enterica strain PNUSAS395099 SAMN37950007-rid19946793.denovo.17, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOIPW010000018.1 Salmonella enterica strain PNUSAS395099 SAMN37950007-rid19946793.denovo.19, whole genome shotgun sequence	3382..3643																																																avrA	ABOIPW010000002.1	553642..554511	99.54	870	0						
GCA_033027895.1_PDT001953095.1_genomic.fna	Salmonella_enterica	0.5203	153.38 KB	11	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83F	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOIPX010000009.1 Salmonella enterica strain PNUSAS395097 SAMN37950004-rid19947183.denovo.09, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOIPX010000063.1 Salmonella enterica strain PNUSAS395097 SAMN37950004-rid19947183.guided.45, whole genome shotgun sequence	12406..12840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	ABOIPX010000021.1 Salmonella enterica strain PNUSAS395097 SAMN37950004-rid19947183.denovo.21, whole genome shotgun sequence	23493..24367																																																																	
GCA_033027915.1_PDT001953089.1_genomic.fna	Salmonella_enterica	0.5209	170.732 KB	10	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_150,thrA_22	464	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_150	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOIPZ010000001.1 Salmonella enterica strain PNUSAS395096 SAMN37950005-rid19946743.denovo.01, whole genome shotgun sequence	378085..378522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOIPZ010000060.1 Salmonella enterica strain PNUSAS395096 SAMN37950005-rid19946743.guided.47, whole genome shotgun sequence	3849..4286	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABOIPZ010000033.1 Salmonella enterica strain PNUSAS395096 SAMN37950005-rid19946743.denovo.33, whole genome shotgun sequence	11388..12030																																																																	
GCA_033027955.1_PDT001953077.1_genomic.fna	Salmonella_enterica	0.5212	728.608 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIQA010000001.1 Salmonella enterica strain PNUSAS394858 SAMN37946750-rid19946673.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOIQA010000038.1 Salmonella enterica strain PNUSAS394858 SAMN37946750-rid19946673.guided.13, whole genome shotgun sequence	4044..4481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIQA010000004.1	562152..563022	99.656	871	0						
GCA_033028925.1_PDT001953040.1_genomic.fna	Salmonella_enterica	0.521	480.934 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIRV010000001.1 Salmonella enterica strain PNUSAS394857 SAMN37946747-rid19946423.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIRV010000029.1 Salmonella enterica strain PNUSAS394857 SAMN37946747-rid19946423.guided.15, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIRV010000017.1 Salmonella enterica strain PNUSAS394857 SAMN37946747-rid19946423.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOIRV010000019.1 Salmonella enterica strain PNUSAS394857 SAMN37946747-rid19946423.denovo.22, whole genome shotgun sequence	3403..3664																																																avrA	ABOIRV010000002.1	553635..554504	99.54	870	0						
GCA_033028965.1_PDT001953039.1_genomic.fna	Salmonella_enterica	0.5216	301.116 KB	6	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOIRX010000001.1 Salmonella enterica strain PNUSAS394879 SAMN37945698-rid19946413.denovo.01, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOIRX010000044.1 Salmonella enterica strain PNUSAS394879 SAMN37945698-rid19946413.guided.29, whole genome shotgun sequence	4841..5278	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIRX010000012.1	101941..102810	99.655	870	0						
GCA_033028985.1_PDT001953038.1_genomic.fna	Salmonella_enterica	0.5207	400.983 KB	4	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIRW010000001.1 Salmonella enterica strain PNUSAS394930 SAMN37946204-rid19946983.denovo.01, whole genome shotgun sequence	498141..498578	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIRW010000026.1 Salmonella enterica strain PNUSAS394930 SAMN37946204-rid19946983.guided.11, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIRW010000003.1	140447..141316	99.425	870	0						
GCA_033029005.1_PDT001953037.1_genomic.fna	Salmonella_enterica	0.521	489.782 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIRY010000001.1 Salmonella enterica strain PNUSAS394974 SAMN37946166-rid19946403.denovo.01, whole genome shotgun sequence	293278..293715	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIRY010000027.1 Salmonella enterica strain PNUSAS394974 SAMN37946166-rid19946403.guided.17, whole genome shotgun sequence	30245..30682	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIRY010000014.1 Salmonella enterica strain PNUSAS394974 SAMN37946166-rid19946403.denovo.15, whole genome shotgun sequence	40537..41179	enterobacteriales	IncFII(S)	100	262 / 262	ABOIRY010000018.1 Salmonella enterica strain PNUSAS394974 SAMN37946166-rid19946403.denovo.21, whole genome shotgun sequence	3446..3707																																																avrA	ABOIRY010000002.1	505540..506409	99.54	870	0						
GCA_033029025.1_PDT001953036.1_genomic.fna	Salmonella_enterica	0.5199	558.277 KB	3	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOISA010000001.1 Salmonella enterica strain PNUSAS394973 SAMN37946206-rid19946973.denovo.01, whole genome shotgun sequence	256413..256850	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOISA010000032.1 Salmonella enterica strain PNUSAS394973 SAMN37946206-rid19946973.guided.20, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	93.48	230 / 230	ABOISA010000013.1 Salmonella enterica strain PNUSAS394973 SAMN37946206-rid19946973.denovo.13, whole genome shotgun sequence	67335..67561																																																																	
GCA_033029045.1_PDT001953034.1_genomic.fna	Salmonella_enterica	0.5215	210.222 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOISB010000001.1 Salmonella enterica strain PNUSAS395019 SAMN37946686-rid19946383.denovo.01, whole genome shotgun sequence	337830..338267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOISB010000045.1 Salmonella enterica strain PNUSAS395019 SAMN37946686-rid19946383.guided.20, whole genome shotgun sequence	31468..31905	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOISB010000003.1	204844..205712	99.77	870	0						
GCA_033029085.1_PDT001953032.1_genomic.fna	Salmonella_enterica	0.5216	304.857 KB	6	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOISD010000002.1 Salmonella enterica strain PNUSAS395014 SAMN37946705-rid19946373.denovo.02, whole genome shotgun sequence	177321..177758	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOISD010000029.1 Salmonella enterica strain PNUSAS395014 SAMN37946705-rid19946373.guided.15, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOISD010000001.1	563730..564599	99.77	870	0						
GCA_033029105.1_PDT001953033.1_genomic.fna	Salmonella_enterica	0.516	370.802 KB	6	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(S),IncFII(SARC14)	aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABOISC010000002.1 Salmonella enterica strain PNUSAS394875 SAMN37945693-rid19946963.denovo.02, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABOISC010000051.1 Salmonella enterica strain PNUSAS394875 SAMN37945693-rid19946963.guided.31, whole genome shotgun sequence	3914..4351	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOISC010000011.1 Salmonella enterica strain PNUSAS394875 SAMN37945693-rid19946963.denovo.11, whole genome shotgun sequence	75607..76249	enterobacteriales	IncFII(S)	94.82	251 / 262	ABOISC010000018.1 Salmonella enterica strain PNUSAS394875 SAMN37945693-rid19946963.denovo.19, whole genome shotgun sequence	20384..20631		enterobacteriales	IncFII(SARC14)	95.52	446 / 445	ABOISC010000018.1 Salmonella enterica strain PNUSAS394875 SAMN37945693-rid19946963.denovo.19, whole genome shotgun sequence	19680..20124																																																				
GCA_033029125.1_PDT001953031.1_genomic.fna	Salmonella_enterica	0.5218	281.188 KB	5	aroC_127,dnaN_81,hemD_111,hisD_564,purE_39,sucA_226,thrA_41	2225	13:b:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_127	dnaN	100	100	dnaN_81	hemD	100	100	hemD_111	hisD	100	100	hisD_564	purE	100	100	purE_39	sucA	100	100	sucA_226	thrA	100	100	thrA_41	13	b	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Durham		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOISF010000001.1 Salmonella enterica strain PNUSAS394873 SAMN37945696-rid19946363.denovo.01, whole genome shotgun sequence	307628..308065	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOISF010000042.1 Salmonella enterica strain PNUSAS394873 SAMN37945696-rid19946363.guided.28, whole genome shotgun sequence	3376..3813	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOISF010000003.1	140519..141388	98.966	870	0						
GCA_033029145.1_PDT001953029.1_genomic.fna	Salmonella_enterica	0.5215	324.688 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOISG010000003.1 Salmonella enterica strain PNUSAS395018 SAMN37946691-rid19946953.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOISG010000040.1 Salmonella enterica strain PNUSAS395018 SAMN37946691-rid19946953.guided.21, whole genome shotgun sequence	5701..6138	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOISG010000015.1 Salmonella enterica strain PNUSAS395018 SAMN37946691-rid19946953.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOISG010000015.1 Salmonella enterica strain PNUSAS395018 SAMN37946691-rid19946953.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABOISG010000001.1	446677..447545	100	869	0						
GCA_033029165.1_PDT001953030.1_genomic.fna	Salmonella_enterica	0.5207	225.56 KB	6	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOISE010000004.1 Salmonella enterica strain PNUSAS394925 SAMN37945691-rid19946353.denovo.04, whole genome shotgun sequence	239429..239866	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOISE010000043.1 Salmonella enterica strain PNUSAS394925 SAMN37945691-rid19946353.guided.19, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.82	643 / 643	ABOISE010000019.1 Salmonella enterica strain PNUSAS394925 SAMN37945691-rid19946353.denovo.20, whole genome shotgun sequence	60065..60707	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOISE010000027.1 Salmonella enterica strain PNUSAS394925 SAMN37945691-rid19946353.denovo.29, whole genome shotgun sequence	10978..11204																																																											
GCA_033029185.1_PDT001953028.1_genomic.fna	Salmonella_enterica	0.5201	385.864 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOISH010000001.1 Salmonella enterica strain PNUSAS394911 SAMN37945688-rid19946943.denovo.01, whole genome shotgun sequence	149414..149851	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOISH010000028.1 Salmonella enterica strain PNUSAS394911 SAMN37945688-rid19946943.guided.19, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOISH010000013.1 Salmonella enterica strain PNUSAS394911 SAMN37945688-rid19946943.denovo.13, whole genome shotgun sequence	64928..65570																																																																	
GCA_033029225.1_PDT001953027.1_genomic.fna	Salmonella_enterica	0.521	186.059 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOISI010000004.1 Salmonella enterica strain PNUSAS394920 SAMN37945683-rid19946343.denovo.04, whole genome shotgun sequence	145228..145665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOISI010000061.1 Salmonella enterica strain PNUSAS394920 SAMN37945683-rid19946343.guided.27, whole genome shotgun sequence	36667..37104	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOISI010000011.1	98459..99327	99.77	870	0						
GCA_033029245.1_PDT001953023.1_genomic.fna	Salmonella_enterica	0.5212	298.234 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncN	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOISL010000002.1 Salmonella enterica strain PNUSAS394893 SAMN37945701-rid19946913.denovo.02, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOISL010000042.1 Salmonella enterica strain PNUSAS394893 SAMN37945701-rid19946913.guided.29, whole genome shotgun sequence	9310..9747	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncN	99.81	514 / 514	ABOISL010000031.1 Salmonella enterica strain PNUSAS394893 SAMN37945701-rid19946913.denovo.34, whole genome shotgun sequence	274..787																																																						avrA	ABOISL010000009.1	150710..151578	99.195	870	0						
GCA_033029265.1_PDT001953025.1_genomic.fna	Salmonella_enterica	0.5209	293.226 KB	4	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOISK010000003.1 Salmonella enterica strain PNUSAS394907 SAMN37946178-rid19946333.denovo.03, whole genome shotgun sequence	618336..618773	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOISK010000038.1 Salmonella enterica strain PNUSAS394907 SAMN37946178-rid19946333.guided.26, whole genome shotgun sequence	14362..14799	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOISK010000001.1	554898..555767	99.31	870	0						
GCA_033029285.1_PDT001953022.1_genomic.fna	Salmonella_enterica	0.5202	238.811 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOISN010000001.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.01, whole genome shotgun sequence	581871..582308	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOISN010000035.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.38, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOISN010000035.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.38, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOISN010000056.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.64, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOISN010000056.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.64, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOISN010000068.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.guided.12, whole genome shotgun sequence	31468..31905	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOISN010000072.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.guided.42, whole genome shotgun sequence	6042..6833	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOISN010000073.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.guided.43, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOISN010000075.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.guided.63, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOISN010000075.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.guided.63, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOISN010000054.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.61, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOISN010000076.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.guided.65, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOISN010000035.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.38, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOISN010000047.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.53, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOISN010000072.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.guided.42, whole genome shotgun sequence	7095..8354	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOISN010000073.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.guided.43, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOISN010000074.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.guided.58, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	770/816	ABOISN010000052.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.59, whole genome shotgun sequence	1..770	Sulfamethoxazole	AB366440	sul2	100	770/816	ABOISN010000052.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.59, whole genome shotgun sequence	1..770	Sulfamethoxazole	FN995456	sul2	100	770/816	ABOISN010000052.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.59, whole genome shotgun sequence	1..770	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOISN010000077.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.guided.67, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOISN010000078.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.guided.68, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOISN010000034.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.37, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOISN010000035.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.38, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOISN010000071.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.guided.40, whole genome shotgun sequence	10180..11385	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOISN010000073.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.guided.43, whole genome shotgun sequence	4527..6446	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABOISN010000035.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.38, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABOISN010000072.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.guided.42, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																								enterobacteriales	Col156	94.81	154 / 154	ABOISN010000039.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.45, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABOISN010000049.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.55, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABOISN010000055.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.62, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOISN010000031.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.34, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOISN010000022.1 Salmonella enterica strain PNUSAS395026 SAMN37946696-rid19946323.denovo.23, whole genome shotgun sequence	55745..56241																											avrA	ABOISN010000002.1	402692..403561	99.885	870	0						
GCA_033029305.1_PDT001953021.1_genomic.fna	Salmonella_enterica	0.5207	439.951 KB	4	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOISM010000001.1 Salmonella enterica strain PNUSAS394908 SAMN37945685-rid19946903.denovo.01, whole genome shotgun sequence	917944..918381	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOISM010000038.1 Salmonella enterica strain PNUSAS394908 SAMN37945685-rid19946903.guided.26, whole genome shotgun sequence	2924..3361	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOISM010000020.1 Salmonella enterica strain PNUSAS394908 SAMN37945685-rid19946903.denovo.22, whole genome shotgun sequence	5946..6588																																																						avrA	ABOISM010000004.1	139986..140855	99.425	870	0						
GCA_033029345.1_PDT001952705.1_genomic.fna	Salmonella_enterica	0.521	737.881 KB	3	aroC_11,dnaN_10,hemD_25,hisD_42,purE_337,sucA_13,thrA_4	1954	4:e,h:e,n,x	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_42	purE	100	100	purE_337	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOISQ010000001.1 Salmonella enterica strain PNUSAS395023 SAMN37946695-rid19946073.denovo.01, whole genome shotgun sequence	643201..643638	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOISQ010000023.1 Salmonella enterica strain PNUSAS395023 SAMN37946695-rid19946073.guided.16, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOISQ010000018.1 Salmonella enterica strain PNUSAS395023 SAMN37946695-rid19946073.denovo.22, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOISQ010000024.1 Salmonella enterica strain PNUSAS395023 SAMN37946695-rid19946073.guided.21, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOISQ010000018.1 Salmonella enterica strain PNUSAS395023 SAMN37946695-rid19946073.denovo.22, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOISQ010000024.1 Salmonella enterica strain PNUSAS395023 SAMN37946695-rid19946073.guided.21, whole genome shotgun sequence	2334..2464																																																avrA	ABOISQ010000004.1	464625..465494	99.54	870	0						
GCA_033029365.1_PDT001952684.1_genomic.fna	Salmonella_enterica	0.5229	397.596 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOISP010000001.1 Salmonella enterica strain PNUSAS394897 SAMN37945704-rid19945943.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOISP010000031.1 Salmonella enterica strain PNUSAS394897 SAMN37945704-rid19945943.guided.21, whole genome shotgun sequence	16217..16654	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOISP010000002.1	149828..150697	99.655	870	0						
GCA_033029405.1_PDT001952658.1_genomic.fna	Salmonella_enterica	0.5209	300.885 KB	6	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38	95	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	100	100	thrA_38	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOISS010000003.1 Salmonella enterica strain PNUSAS394872 SAMN37945699-rid19945323.denovo.03, whole genome shotgun sequence	406389..406826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOISS010000047.1 Salmonella enterica strain PNUSAS394872 SAMN37945699-rid19945323.guided.29, whole genome shotgun sequence	22378..22815	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOISS010000001.1	444980..445849	99.655	870	0						
GCA_033029445.1_PDT001952618.1_genomic.fna	Salmonella_enterica	0.5207	403.074 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOISX010000002.1 Salmonella enterica strain PNUSAS394924 SAMN37944470-rid19945113.denovo.02, whole genome shotgun sequence	382862..383299	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOISX010000056.1 Salmonella enterica strain PNUSAS394924 SAMN37944470-rid19945113.guided.25, whole genome shotgun sequence	2212..2649	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOISX010000008.1	38108..38978	99.196	871	0						
GCA_033029525.1_PDT001763377.1_genomic.fna	Salmonella_enterica	0.5196	219.649 KB	8	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOITC010000001.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313005 SAMN35448695-rid18234313.denovo.01, whole genome shotgun sequence	258197..258634	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOITC010000048.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313005 SAMN35448695-rid18234313.guided.33, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOITC010000005.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313005 SAMN35448695-rid18234313.denovo.05, whole genome shotgun sequence	17991..18413	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOITC010000049.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313005 SAMN35448695-rid18234313.guided.36, whole genome shotgun sequence	16565..16987	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOITC010000010.1	96079..96948	99.195	870	0						
GCA_033029605.1_PDT001763400.1_genomic.fna	Salmonella_enterica	0.5229	65.863 KB	24	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOISY010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.denovo.003, whole genome shotgun sequence	83569..84006	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOISY010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.denovo.089, whole genome shotgun sequence	11972..12763	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOISY010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.denovo.089, whole genome shotgun sequence	11972..12763	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOISY010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.denovo.118, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOISY010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.denovo.118, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABOISY010000161.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.guided.096, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOISY010000161.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.guided.096, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOISY010000162.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.guided.099, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOISY010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.guided.116, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOISY010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.guided.116, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOISY010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.denovo.114, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOISY010000163.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.guided.113, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOISY010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.denovo.089, whole genome shotgun sequence	10628..11467	Sulfamethoxazole	U12338	sul1	100	840/840	ABOISY010000161.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.guided.096, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOISY010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.denovo.105, whole genome shotgun sequence	1796..2995	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOISY010000165.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.guided.126, whole genome shotgun sequence	1821..3020	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOISY010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313053 SAMN35448799-rid18234543.denovo.082, whole genome shotgun sequence	14638..15197																																																						avrA	ABOISY010000004.1	94091..94960	99.655	870	0						
GCA_033029625.1_PDT001763397.1_genomic.fna	Salmonella_enterica	0.522	159.348 KB	10	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOITE010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313051 SAMN35448797-rid18234513.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOITE010000034.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313051 SAMN35448797-rid18234513.denovo.35, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOITE010000034.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313051 SAMN35448797-rid18234513.denovo.35, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOITE010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313051 SAMN35448797-rid18234513.guided.41, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOITE010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313051 SAMN35448797-rid18234513.guided.41, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOITE010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313051 SAMN35448797-rid18234513.guided.44, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	fosA3	100	417/417	ABOITE010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313051 SAMN35448797-rid18234513.denovo.66, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABOITE010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313051 SAMN35448797-rid18234513.guided.71, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABOITE010000034.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313051 SAMN35448797-rid18234513.denovo.35, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABOITE010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313051 SAMN35448797-rid18234513.guided.41, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOITE010000034.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313051 SAMN35448797-rid18234513.denovo.35, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOITE010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313051 SAMN35448797-rid18234513.guided.41, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOITE010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313051 SAMN35448797-rid18234513.denovo.46, whole genome shotgun sequence	13994..14553																																																						avrA	ABOITE010000003.1	149828..150697	99.655	870	0						
GCA_033029645.1_PDT001763398.1_genomic.fna	Salmonella_enterica	0.5233	53.699 KB	28	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOITD010000066.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313052 SAMN35448798-rid18234523.denovo.068, whole genome shotgun sequence	11351..11788	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOITD010000118.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313052 SAMN35448798-rid18234523.denovo.123, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOITD010000118.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313052 SAMN35448798-rid18234523.denovo.123, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOITD010000118.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313052 SAMN35448798-rid18234523.denovo.123, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOITD010000118.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313052 SAMN35448798-rid18234523.denovo.123, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOITD010000118.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313052 SAMN35448798-rid18234523.denovo.123, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOITD010000151.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313052 SAMN35448798-rid18234523.guided.067, whole genome shotgun sequence	14180..14617	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOITD010000153.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313052 SAMN35448798-rid18234523.guided.120, whole genome shotgun sequence	1512..2348	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOITD010000153.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313052 SAMN35448798-rid18234523.guided.120, whole genome shotgun sequence	710..1512	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOITD010000153.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313052 SAMN35448798-rid18234523.guided.120, whole genome shotgun sequence	709..1512	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOITD010000153.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313052 SAMN35448798-rid18234523.guided.120, whole genome shotgun sequence	709..1512	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOITD010000153.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313052 SAMN35448798-rid18234523.guided.120, whole genome shotgun sequence	709..1512	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOITD010000119.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313052 SAMN35448798-rid18234523.denovo.124, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOITD010000154.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313052 SAMN35448798-rid18234523.guided.122, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOITD010000034.1	39546..40415	99.655	870	0						
GCA_033029665.1_PDT001763393.1_genomic.fna	Salmonella_enterica	0.5198	94.138 KB	18	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOITG010000021.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312880 SAMN35448793-rid18234473.denovo.021, whole genome shotgun sequence	52900..53337	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOITG010000063.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312880 SAMN35448793-rid18234473.denovo.065, whole genome shotgun sequence	13011..13847	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOITG010000063.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312880 SAMN35448793-rid18234473.denovo.065, whole genome shotgun sequence	13847..14650	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOITG010000107.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312880 SAMN35448793-rid18234473.guided.052, whole genome shotgun sequence	16071..16508	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOITG010000110.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312880 SAMN35448793-rid18234473.guided.076, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOITG010000110.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312880 SAMN35448793-rid18234473.guided.076, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOITG010000079.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312880 SAMN35448793-rid18234473.denovo.083, whole genome shotgun sequence	2304..3509	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOITG010000111.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312880 SAMN35448793-rid18234473.guided.087, whole genome shotgun sequence	2310..3515	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOITG010000081.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312880 SAMN35448793-rid18234473.denovo.085, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOITG010000063.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312880 SAMN35448793-rid18234473.denovo.065, whole genome shotgun sequence	12127..12388		enterobacteriales	IncFII	96.95	262 / 261	ABOITG010000110.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312880 SAMN35448793-rid18234473.guided.076, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOITG010000068.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312880 SAMN35448793-rid18234473.denovo.071, whole genome shotgun sequence	2153..2525																																		avrA	ABOITG010000024.1	5379..6248	99.655	870	0						
GCA_033029685.1_PDT001763394.1_genomic.fna	Salmonella_enterica	0.5227	84.257 KB	19	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOITF010000021.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313050 SAMN35448795-rid18234483.denovo.021, whole genome shotgun sequence	17244..17681	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOITF010000134.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313050 SAMN35448795-rid18234483.guided.058, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOITF010000080.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313050 SAMN35448795-rid18234483.denovo.082, whole genome shotgun sequence	6817..7459	enterobacteriales	IncFII(S)	100	262 / 262	ABOITF010000081.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313050 SAMN35448795-rid18234483.denovo.083, whole genome shotgun sequence	3413..3674																																																avrA	ABOITF010000003.1	81574..82443	99.54	870	0						
GCA_033029705.1_PDT001763391.1_genomic.fna	Salmonella_enterica	0.5226	66.122 KB	24	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOITI010000008.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313069 SAMN35448791-rid18234453.denovo.008, whole genome shotgun sequence	16099..16536	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOITI010000146.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313069 SAMN35448791-rid18234453.guided.067, whole genome shotgun sequence	16064..16501	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	100	262 / 262	ABOITI010000101.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313069 SAMN35448791-rid18234453.denovo.103, whole genome shotgun sequence	3009..3270																																																						avrA	ABOITI010000014.1	81685..82554	99.54	870	0						
GCA_033029715.1_PDT001763392.1_genomic.fna	Salmonella_enterica	0.5231	78.14 KB	17	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOITH010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313070 SAMN35448792-rid18234463.denovo.001, whole genome shotgun sequence	378164..378601	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOITH010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313070 SAMN35448792-rid18234463.denovo.096, whole genome shotgun sequence	4280..5071	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOITH010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313070 SAMN35448792-rid18234463.denovo.096, whole genome shotgun sequence	4280..5071	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOITH010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313070 SAMN35448792-rid18234463.guided.085, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOITH010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313070 SAMN35448792-rid18234463.guided.112, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOITH010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313070 SAMN35448792-rid18234463.guided.112, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOITH010000136.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313070 SAMN35448792-rid18234463.guided.126, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	X62115	dfrA14	100	474/474	ABOITH010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313070 SAMN35448792-rid18234463.denovo.096, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOITH010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313070 SAMN35448792-rid18234463.guided.112, whole genome shotgun sequence	2126..2599	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																																									gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOITH010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313070 SAMN35448792-rid18234463.denovo.114, whole genome shotgun sequence	877..1436																																																						avrA	ABOITH010000003.1	124267..125136	99.655	870	0						
GCA_033029745.1_PDT001763390.1_genomic.fna	Salmonella_enterica	0.5206	86.641 KB	20	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOITK010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313067 SAMN35448789-rid18234443.denovo.012, whole genome shotgun sequence	52275..52712	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOITK010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313067 SAMN35448789-rid18234443.denovo.076, whole genome shotgun sequence	6223..7059	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOITK010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313067 SAMN35448789-rid18234443.denovo.076, whole genome shotgun sequence	7059..7862	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOITK010000139.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313067 SAMN35448789-rid18234443.guided.056, whole genome shotgun sequence	14044..14481	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOITK010000140.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313067 SAMN35448789-rid18234443.guided.084, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOITK010000140.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313067 SAMN35448789-rid18234443.guided.084, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOITK010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313067 SAMN35448789-rid18234443.denovo.100, whole genome shotgun sequence	2317..3522	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOITK010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313067 SAMN35448789-rid18234443.guided.109, whole genome shotgun sequence	985..2190	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOITK010000092.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313067 SAMN35448789-rid18234443.denovo.096, whole genome shotgun sequence	1880..2561	enterobacteriales	IncFII	96.95	262 / 261	ABOITK010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313067 SAMN35448789-rid18234443.denovo.076, whole genome shotgun sequence	5339..5600		enterobacteriales	IncFII	96.95	262 / 261	ABOITK010000140.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313067 SAMN35448789-rid18234443.guided.084, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOITK010000093.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313067 SAMN35448789-rid18234443.denovo.097, whole genome shotgun sequence	2732..3104																																		avrA	ABOITK010000006.1	39495..40364	99.655	870	0						
GCA_033029765.1_PDT001763389.1_genomic.fna	Salmonella_enterica	0.5214	106.509 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOITJ010000013.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313068 SAMN35448790-rid18234433.denovo.013, whole genome shotgun sequence	52294..52731	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOITJ010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313068 SAMN35448790-rid18234433.denovo.053, whole genome shotgun sequence	18450..19241	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOITJ010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313068 SAMN35448790-rid18234433.denovo.053, whole genome shotgun sequence	18450..19241	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOITJ010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313068 SAMN35448790-rid18234433.guided.067, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOITJ010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313068 SAMN35448790-rid18234433.guided.077, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOITJ010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313068 SAMN35448790-rid18234433.guided.077, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOITJ010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313068 SAMN35448790-rid18234433.denovo.053, whole genome shotgun sequence	17106..17945	Sulfamethoxazole	U12338	sul1	100	840/840	ABOITJ010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313068 SAMN35448790-rid18234433.guided.077, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOITJ010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313068 SAMN35448790-rid18234433.denovo.053, whole genome shotgun sequence	3390..4589	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOITJ010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313068 SAMN35448790-rid18234433.guided.074, whole genome shotgun sequence	2234..3433	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOITJ010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313068 SAMN35448790-rid18234433.denovo.070, whole genome shotgun sequence	5628..6187	enterobacteriales	IncX1	98.93	374 / 374	ABOITJ010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313068 SAMN35448790-rid18234433.denovo.117, whole genome shotgun sequence	194..567																																																avrA	ABOITJ010000003.1	93814..94683	99.655	870	0						
GCA_033029785.1_PDT001763387.1_genomic.fna	Salmonella_enterica	0.5222	65.939 KB	21	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOITL010000061.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS22313065 SAMN35448787-rid18234413.denovo.061, whole genome shotgun sequence	12514..12951	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOITL010000129.1 Salmonella enterica subsp. enterica serovar Muenster strain FSIS22313065 SAMN35448787-rid18234413.guided.066, whole genome shotgun sequence	15447..15884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033029805.1_PDT001763386.1_genomic.fna	Salmonella_enterica	0.521	60.874 KB	30	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,fosA7,fosA7,floR,floR,qnrB19,qnrB19,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),IncC	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOITN010000022.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.denovo.022, whole genome shotgun sequence	16092..16529	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOITN010000117.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.denovo.122, whole genome shotgun sequence	2501..3337	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOITN010000117.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.denovo.122, whole genome shotgun sequence	3337..4140	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOITN010000182.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.guided.101, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOITN010000184.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.guided.121, whole genome shotgun sequence	1974..2810	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOITN010000184.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.guided.121, whole genome shotgun sequence	1171..1974	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOITN010000060.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.denovo.060, whole genome shotgun sequence	25929..27074	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOITN010000185.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.guided.126, whole genome shotgun sequence	363..1508	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	fosA7	97.16	423/423	ABOITN010000080.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.denovo.080, whole genome shotgun sequence	18016..18438	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOITN010000183.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.guided.111, whole genome shotgun sequence	6430..6852	Fosfomycin	LAPJ01000014	floR	98.27	1214/1215	ABOITN010000114.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.denovo.118, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABOITN010000186.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.guided.129, whole genome shotgun sequence	2067..3280	Chloramphenicol, Florfenicol	AF118107	qnrB19	100	645/645	ABOITN010000126.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.denovo.133, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOITN010000187.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.guided.140, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABOITN010000117.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.denovo.122, whole genome shotgun sequence	4201..5016	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOITN010000184.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.guided.121, whole genome shotgun sequence	295..1110	Sulfamethoxazole	AY034138	tet(A)	100	1240/1275	ABOITN010000117.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.denovo.122, whole genome shotgun sequence	1..1240	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOITN010000184.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.guided.121, whole genome shotgun sequence	4071..5345	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOITN010000126.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.denovo.133, whole genome shotgun sequence	1522..1652	enterobacteriales	IncC	100	417 / 417	ABOITN010000127.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313063 SAMN35448785-rid18234403.denovo.134, whole genome shotgun sequence	1602..2018																																																avrA	ABOITN010000006.1	95964..96833	99.195	870	0						
GCA_033029825.1_PDT001763388.1_genomic.fna	Salmonella_enterica	0.5229	39.691 KB	42	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),Col(pHAD28),ColpVC,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOITM010000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313066 SAMN35448788-rid18234423.denovo.011, whole genome shotgun sequence	11353..11790	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOITM010000225.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313066 SAMN35448788-rid18234423.guided.085, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOITM010000068.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313066 SAMN35448788-rid18234423.denovo.068, whole genome shotgun sequence	14271..15416	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOITM010000224.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313066 SAMN35448788-rid18234423.guided.078, whole genome shotgun sequence	10809..11954	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOITM010000140.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313066 SAMN35448788-rid18234423.denovo.145, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOITM010000228.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313066 SAMN35448788-rid18234423.guided.144, whole genome shotgun sequence	3336..4151	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOITM010000140.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313066 SAMN35448788-rid18234423.denovo.145, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOITM010000228.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313066 SAMN35448788-rid18234423.guided.144, whole genome shotgun sequence	6328..7527	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOITM010000165.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313066 SAMN35448788-rid18234423.denovo.170, whole genome shotgun sequence	371..501	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOITM010000166.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313066 SAMN35448788-rid18234423.denovo.171, whole genome shotgun sequence	3134..3264		enterobacteriales	ColpVC	96.89	193 / 193	ABOITM010000184.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313066 SAMN35448788-rid18234423.denovo.189, whole genome shotgun sequence	1525..1717		enterobacteriales	IncC	100	417 / 417	ABOITM010000036.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313066 SAMN35448788-rid18234423.denovo.036, whole genome shotgun sequence	38349..38765																																		avrA	ABOITM010000005.1	100977..101846	99.885	870	0						
GCA_033029845.1_PDT001763385.1_genomic.fna	Salmonella_enterica	0.5206	62.252 KB	26	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOITO010000023.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313060 SAMN35448783-rid18234393.denovo.023, whole genome shotgun sequence	52364..52801	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOITO010000107.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313060 SAMN35448783-rid18234393.denovo.110, whole genome shotgun sequence	2132..2968	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOITO010000107.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313060 SAMN35448783-rid18234393.denovo.110, whole genome shotgun sequence	2968..3771	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOITO010000171.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313060 SAMN35448783-rid18234393.guided.087, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOITO010000172.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313060 SAMN35448783-rid18234393.guided.111, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOITO010000172.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313060 SAMN35448783-rid18234393.guided.111, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOITO010000173.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313060 SAMN35448783-rid18234393.guided.112, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOITO010000173.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313060 SAMN35448783-rid18234393.guided.112, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOITO010000125.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313060 SAMN35448783-rid18234393.denovo.130, whole genome shotgun sequence	2209..3414	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOITO010000174.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313060 SAMN35448783-rid18234393.guided.133, whole genome shotgun sequence	1996..3201	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOITO010000122.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313060 SAMN35448783-rid18234393.denovo.127, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABOITO010000107.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313060 SAMN35448783-rid18234393.denovo.110, whole genome shotgun sequence	1248..1509		enterobacteriales	IncFII	96.95	262 / 261	ABOITO010000172.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313060 SAMN35448783-rid18234393.guided.111, whole genome shotgun sequence	4572..4833		enterobacteriales	IncFII	96.95	262 / 261	ABOITO010000173.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313060 SAMN35448783-rid18234393.guided.112, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOITO010000136.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313060 SAMN35448783-rid18234393.denovo.142, whole genome shotgun sequence	249..390		enterobacteriales	IncX1	100	373 / 373	ABOITO010000134.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313060 SAMN35448783-rid18234393.denovo.140, whole genome shotgun sequence	2153..2525																				avrA	ABOITO010000044.1	39484..40353	99.655	870	0						
GCA_033029865.1_PDT001763384.1_genomic.fna	Salmonella_enterica	0.5227	62.422 KB	21	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOITP010000019.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS22313064 SAMN35448786-rid18234383.denovo.019, whole genome shotgun sequence	12523..12960	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOITP010000118.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS22313064 SAMN35448786-rid18234383.guided.079, whole genome shotgun sequence	14147..14584	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033029885.1_PDT001763383.1_genomic.fna	Salmonella_enterica	0.5229	36.236 KB	36	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		3	Col440I,ColpVC,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOITQ010000014.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313061 SAMN35448784-rid18234373.denovo.014, whole genome shotgun sequence	12398..12835	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOITQ010000223.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313061 SAMN35448784-rid18234373.guided.135, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOITQ010000049.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313061 SAMN35448784-rid18234373.denovo.049, whole genome shotgun sequence	14271..15416	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOITQ010000224.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313061 SAMN35448784-rid18234373.guided.153, whole genome shotgun sequence	2123..3268	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOITQ010000065.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313061 SAMN35448784-rid18234373.denovo.065, whole genome shotgun sequence	10341..11156	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOITQ010000222.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313061 SAMN35448784-rid18234373.guided.122, whole genome shotgun sequence	7929..8744	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOITQ010000065.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313061 SAMN35448784-rid18234373.denovo.065, whole genome shotgun sequence	13333..14532	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOITQ010000222.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313061 SAMN35448784-rid18234373.guided.122, whole genome shotgun sequence	10921..12120	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																				enterobacteriales	Col440I	93.81	113 / 114	ABOITQ010000168.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313061 SAMN35448784-rid18234373.denovo.173, whole genome shotgun sequence	2528..2639	enterobacteriales	ColpVC	98.96	193 / 193	ABOITQ010000179.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313061 SAMN35448784-rid18234373.denovo.184, whole genome shotgun sequence	805..997		enterobacteriales	IncC	100	417 / 417	ABOITQ010000148.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313061 SAMN35448784-rid18234373.denovo.152, whole genome shotgun sequence	3289..3705																																									avrA	ABOITQ010000017.1	43805..44674	99.885	870	0						
GCA_033029905.1_PDT001763382.1_genomic.fna	Salmonella_enterica	0.5243	56.54 KB	25	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOITR010000021.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313059 SAMN35448782-rid18234363.denovo.021, whole genome shotgun sequence	12510..12947	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOITR010000142.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22313059 SAMN35448782-rid18234363.guided.057, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033029925.1_PDT001763381.1_genomic.fna	Salmonella_enterica	0.5218	50.985 KB	31	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		3	Col(pHAD28),Col440I,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOITS010000061.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313056 SAMN35448780-rid18234353.denovo.062, whole genome shotgun sequence	13409..13846	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOITS010000176.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313056 SAMN35448780-rid18234353.guided.080, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABOITS010000029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313056 SAMN35448780-rid18234353.denovo.029, whole genome shotgun sequence	4090..4905	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOITS010000178.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313056 SAMN35448780-rid18234353.guided.114, whole genome shotgun sequence	4112..4927	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOITS010000029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313056 SAMN35448780-rid18234353.denovo.029, whole genome shotgun sequence	7082..8281	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOITS010000178.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313056 SAMN35448780-rid18234353.guided.114, whole genome shotgun sequence	7104..8303	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOITS010000133.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313056 SAMN35448780-rid18234353.denovo.137, whole genome shotgun sequence	371..501	enterobacteriales	Col440I	93.81	113 / 114	ABOITS010000142.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313056 SAMN35448780-rid18234353.denovo.146, whole genome shotgun sequence	2528..2639		enterobacteriales	IncC	100	417 / 417	ABOITS010000029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22313056 SAMN35448780-rid18234353.denovo.029, whole genome shotgun sequence	49871..50287																																									avrA	ABOITS010000004.1	106209..107078	99.885	870	0						
GCA_033029945.1_PDT001763380.1_genomic.fna	Salmonella_enterica	0.5212	50.183 KB	32	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	-:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	-	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOITU010000017.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313055 SAMN35448779-rid18234343.denovo.017, whole genome shotgun sequence	16082..16519	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOITU010000184.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313055 SAMN35448779-rid18234343.guided.082, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOITU010000050.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313055 SAMN35448779-rid18234343.denovo.050, whole genome shotgun sequence	18027..18449	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOITU010000186.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22313055 SAMN35448779-rid18234343.guided.118, whole genome shotgun sequence	6429..6851	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOITU010000011.1	81794..82663	99.195	870	0						
GCA_033029965.1_PDT001763378.1_genomic.fna	Salmonella_enterica	0.5235	50.344 KB	30	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	7	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOITV010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313054 SAMN35448698-rid18234323.denovo.060, whole genome shotgun sequence	11334..11771	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOITV010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313054 SAMN35448698-rid18234323.denovo.145, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOITV010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313054 SAMN35448698-rid18234323.denovo.145, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOITV010000208.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313054 SAMN35448698-rid18234323.guided.123, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOITV010000209.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313054 SAMN35448698-rid18234323.guided.142, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOITV010000209.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313054 SAMN35448698-rid18234323.guided.142, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOITV010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313054 SAMN35448698-rid18234323.denovo.162, whole genome shotgun sequence	185..1060	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOITV010000210.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313054 SAMN35448698-rid18234323.guided.167, whole genome shotgun sequence	216..1091	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABOITV010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313054 SAMN35448698-rid18234323.denovo.068, whole genome shotgun sequence	354..1193	Sulfamethoxazole	U12338	sul1	100	840/840	ABOITV010000206.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313054 SAMN35448698-rid18234323.guided.086, whole genome shotgun sequence	395..1234	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOITV010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313054 SAMN35448698-rid18234323.denovo.068, whole genome shotgun sequence	13710..14909	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOITV010000206.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313054 SAMN35448698-rid18234323.guided.086, whole genome shotgun sequence	13751..14950	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOITV010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313054 SAMN35448698-rid18234323.denovo.157, whole genome shotgun sequence	65..538	Trimethoprim	AF393510	dfrA14	100	474/474	ABOITV010000211.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313054 SAMN35448698-rid18234323.guided.169, whole genome shotgun sequence	96..569	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOITV010000142.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313054 SAMN35448698-rid18234323.denovo.147, whole genome shotgun sequence	2135..2694																																																						avrA	ABOITV010000037.1	39534..40403	99.655	870	0						
GCA_033029985.1_PDT001763379.1_genomic.fna	Salmonella_enterica	0.5229	60.249 KB	24	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOITT010000021.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313058 SAMN35448781-rid18234333.denovo.021, whole genome shotgun sequence	13100..13537	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOITT010000096.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313058 SAMN35448781-rid18234333.denovo.098, whole genome shotgun sequence	5973..6809	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOITT010000096.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313058 SAMN35448781-rid18234333.denovo.098, whole genome shotgun sequence	6809..7611	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOITT010000096.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313058 SAMN35448781-rid18234333.denovo.098, whole genome shotgun sequence	6809..7612	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOITT010000096.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313058 SAMN35448781-rid18234333.denovo.098, whole genome shotgun sequence	6809..7612	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOITT010000096.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313058 SAMN35448781-rid18234333.denovo.098, whole genome shotgun sequence	6809..7612	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOITT010000131.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313058 SAMN35448781-rid18234333.guided.037, whole genome shotgun sequence	31333..31770	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOITT010000135.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313058 SAMN35448781-rid18234333.guided.112, whole genome shotgun sequence	1512..2348	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOITT010000135.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313058 SAMN35448781-rid18234333.guided.112, whole genome shotgun sequence	710..1512	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOITT010000135.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313058 SAMN35448781-rid18234333.guided.112, whole genome shotgun sequence	709..1512	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOITT010000135.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313058 SAMN35448781-rid18234333.guided.112, whole genome shotgun sequence	709..1512	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOITT010000135.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313058 SAMN35448781-rid18234333.guided.112, whole genome shotgun sequence	709..1512	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOITT010000103.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313058 SAMN35448781-rid18234333.denovo.107, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOITT010000134.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22313058 SAMN35448781-rid18234333.guided.106, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOITT010000022.1	61255..62124	99.655	870	0						
GCA_033030005.1_PDT001763374.1_genomic.fna	Salmonella_enterica	0.5227	62.929 KB	24	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOITW010000023.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309634 SAMN35448694-rid18234283.denovo.023, whole genome shotgun sequence	48338..48775	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOITW010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309634 SAMN35448694-rid18234283.denovo.046, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOITW010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309634 SAMN35448694-rid18234283.denovo.046, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOITW010000106.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309634 SAMN35448694-rid18234283.denovo.111, whole genome shotgun sequence	1042..2067	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOITW010000106.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309634 SAMN35448694-rid18234283.denovo.111, whole genome shotgun sequence	37..813	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABOITW010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309634 SAMN35448694-rid18234283.guided.065, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOITW010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309634 SAMN35448694-rid18234283.guided.065, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOITW010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309634 SAMN35448694-rid18234283.guided.070, whole genome shotgun sequence	8093..8530	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOITW010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309634 SAMN35448694-rid18234283.guided.110, whole genome shotgun sequence	1083..2108	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOITW010000156.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309634 SAMN35448694-rid18234283.guided.110, whole genome shotgun sequence	78..854	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABOITW010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309634 SAMN35448694-rid18234283.denovo.046, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOITW010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309634 SAMN35448694-rid18234283.guided.065, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOITW010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309634 SAMN35448694-rid18234283.denovo.046, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOITW010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309634 SAMN35448694-rid18234283.guided.065, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOITW010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309634 SAMN35448694-rid18234283.denovo.069, whole genome shotgun sequence	9109..9668																																																						avrA	ABOITW010000021.1	39536..40405	99.655	870	0						
GCA_033030025.1_PDT001763373.1_genomic.fna	Salmonella_enterica	0.5206	61.113 KB	26	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOITX010000010.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309633 SAMN35448693-rid18234273.denovo.010, whole genome shotgun sequence	84420..84857	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOITX010000109.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309633 SAMN35448693-rid18234273.denovo.112, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOITX010000109.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309633 SAMN35448693-rid18234273.denovo.112, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOITX010000198.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309633 SAMN35448693-rid18234273.guided.060, whole genome shotgun sequence	15443..15880	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOITX010000201.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309633 SAMN35448693-rid18234273.guided.119, whole genome shotgun sequence	2580..3416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOITX010000201.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309633 SAMN35448693-rid18234273.guided.119, whole genome shotgun sequence	1777..2580	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOITX010000129.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309633 SAMN35448693-rid18234273.denovo.133, whole genome shotgun sequence	2189..3394	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOITX010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309633 SAMN35448693-rid18234273.guided.151, whole genome shotgun sequence	138..1343	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOITX010000128.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309633 SAMN35448693-rid18234273.denovo.132, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABOITX010000109.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309633 SAMN35448693-rid18234273.denovo.112, whole genome shotgun sequence	1831..2092		enterobacteriales	IncFII	96.95	262 / 261	ABOITX010000201.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309633 SAMN35448693-rid18234273.guided.119, whole genome shotgun sequence	4039..4300		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOITX010000102.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309633 SAMN35448693-rid18234273.denovo.105, whole genome shotgun sequence	4489..4630		enterobacteriales	IncX1	100	373 / 373	ABOITX010000148.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309633 SAMN35448693-rid18234273.denovo.153, whole genome shotgun sequence	1128..1500																											avrA	ABOITX010000024.1	39484..40353	99.655	870	0						
GCA_033030065.1_PDT001763370.1_genomic.fna	Salmonella_enterica	0.5232	52.746 KB	31	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIUC010000019.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309629 SAMN35448690-rid18234243.denovo.019, whole genome shotgun sequence	52181..52618	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOIUC010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309629 SAMN35448690-rid18234243.denovo.081, whole genome shotgun sequence	18434..19225	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIUC010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309629 SAMN35448690-rid18234243.denovo.081, whole genome shotgun sequence	18434..19225	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOIUC010000202.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309629 SAMN35448690-rid18234243.guided.026, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOIUC010000203.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309629 SAMN35448690-rid18234243.guided.091, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIUC010000203.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309629 SAMN35448690-rid18234243.guided.091, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOIUC010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309629 SAMN35448690-rid18234243.denovo.081, whole genome shotgun sequence	17090..17929	Sulfamethoxazole	U12338	sul1	100	840/840	ABOIUC010000203.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309629 SAMN35448690-rid18234243.guided.091, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOIUC010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309629 SAMN35448690-rid18234243.denovo.081, whole genome shotgun sequence	3374..4573	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIUC010000203.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309629 SAMN35448690-rid18234243.guided.091, whole genome shotgun sequence	15912..17111	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOIUC010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309629 SAMN35448690-rid18234243.denovo.136, whole genome shotgun sequence	2130..2689																																																						avrA	ABOIUC010000040.1	39689..40558	99.655	870	0						
GCA_033030105.1_PDT001763372.1_genomic.fna	Salmonella_enterica	0.5211	68.287 KB	22	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOITY010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309631 SAMN35448692-rid18234263.denovo.055, whole genome shotgun sequence	12474..12911	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOITY010000172.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309631 SAMN35448692-rid18234263.guided.054, whole genome shotgun sequence	12387..12824	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOITY010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309631 SAMN35448692-rid18234263.denovo.102, whole genome shotgun sequence	5327..5886	enterobacteriales	IncX1	98.66	374 / 374	ABOITY010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309631 SAMN35448692-rid18234263.denovo.162, whole genome shotgun sequence	96..469																																																avrA	ABOITY010000044.1	39430..40299	99.655	870	0						
GCA_033030125.1_PDT001763369.1_genomic.fna	Salmonella_enterica	0.5203	61.514 KB	26	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIUD010000028.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309632 SAMN35448689-rid18234233.denovo.028, whole genome shotgun sequence	12411..12848	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIUD010000094.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309632 SAMN35448689-rid18234233.denovo.097, whole genome shotgun sequence	5734..6570	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIUD010000094.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309632 SAMN35448689-rid18234233.denovo.097, whole genome shotgun sequence	6570..7373	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOIUD010000182.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309632 SAMN35448689-rid18234233.guided.065, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIUD010000185.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309632 SAMN35448689-rid18234233.guided.118, whole genome shotgun sequence	1525..2361	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIUD010000185.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309632 SAMN35448689-rid18234233.guided.118, whole genome shotgun sequence	722..1525	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOIUD010000116.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309632 SAMN35448689-rid18234233.denovo.120, whole genome shotgun sequence	2219..3424	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOIUD010000186.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309632 SAMN35448689-rid18234233.guided.130, whole genome shotgun sequence	657..1862	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOIUD010000119.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309632 SAMN35448689-rid18234233.denovo.123, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOIUD010000094.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309632 SAMN35448689-rid18234233.denovo.097, whole genome shotgun sequence	4850..5111		enterobacteriales	IncFII	96.95	262 / 261	ABOIUD010000185.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309632 SAMN35448689-rid18234233.guided.118, whole genome shotgun sequence	2984..3245		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOIUD010000092.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309632 SAMN35448689-rid18234233.denovo.095, whole genome shotgun sequence	3770..3911		enterobacteriales	IncX1	100	373 / 373	ABOIUD010000104.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32309632 SAMN35448689-rid18234233.denovo.107, whole genome shotgun sequence	2153..2525																											avrA	ABOIUD010000082.1	13759..14628	99.655	870	0						
GCA_033030145.1_PDT001763371.1_genomic.fna	Salmonella_enterica	0.5219	48.71 KB	31	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIUA010000052.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309630 SAMN35448691-rid18234253.denovo.052, whole genome shotgun sequence	14031..14468	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIUA010000261.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309630 SAMN35448691-rid18234253.guided.160, whole genome shotgun sequence	2864..3301	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOIUA010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309630 SAMN35448691-rid18234253.denovo.147, whole genome shotgun sequence	2176..2735	enterobacteriales	IncX1	98.66	374 / 374	ABOIUA010000234.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309630 SAMN35448691-rid18234253.denovo.239, whole genome shotgun sequence	99..472																																																avrA	ABOIUA010000036.1	39349..40218	99.655	870	0						
GCA_033030445.1_PDT001763358.1_genomic.fna	Salmonella_enterica	0.5228	53.616 KB	32	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	10	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIUM010000006.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.denovo.006, whole genome shotgun sequence	87626..88063	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOIUM010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.denovo.051, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIUM010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.denovo.051, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOIUM010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.denovo.134, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOIUM010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.denovo.134, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOIUM010000175.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.denovo.184, whole genome shotgun sequence	91..906	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	X62115	aadA1	99.75	792/792	ABOIUM010000200.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.guided.091, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIUM010000200.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.guided.091, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOIUM010000203.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.guided.111, whole genome shotgun sequence	4801..5238	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOIUM010000205.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.guided.141, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOIUM010000205.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.guided.141, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOIUM010000208.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.guided.179, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	X62115	blaCTX-M-65	100	876/876	ABOIUM010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.denovo.158, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOIUM010000207.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.guided.164, whole genome shotgun sequence	246..1121	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOIUM010000132.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.denovo.137, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOIUM010000204.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.guided.136, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOIUM010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.denovo.051, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABOIUM010000200.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.guided.091, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOIUM010000051.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.denovo.051, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIUM010000200.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.guided.091, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOIUM010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.denovo.146, whole genome shotgun sequence	60..533	Trimethoprim	AF393510	dfrA14	100	474/474	ABOIUM010000206.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.guided.160, whole genome shotgun sequence	91..564	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOIUM010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32309608 SAMN35448678-rid18234123.denovo.130, whole genome shotgun sequence	2087..2646																																																						avrA	ABOIUM010000018.1	62098..62967	99.655	870	0						
GCA_033030485.1_PDT001763357.1_genomic.fna	Salmonella_enterica	0.523	58.96 KB	29	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIUN010000025.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313003 SAMN35448676-rid18234113.denovo.025, whole genome shotgun sequence	12412..12849	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOIUN010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313003 SAMN35448676-rid18234113.denovo.073, whole genome shotgun sequence	22673..23464	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIUN010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313003 SAMN35448676-rid18234113.denovo.073, whole genome shotgun sequence	22673..23464	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOIUN010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313003 SAMN35448676-rid18234113.guided.072, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIUN010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313003 SAMN35448676-rid18234113.guided.072, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOIUN010000181.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313003 SAMN35448676-rid18234113.guided.078, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	blaCTX-M-65	100	876/876	ABOIUN010000128.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313003 SAMN35448676-rid18234113.denovo.132, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOIUN010000183.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313003 SAMN35448676-rid18234113.guided.134, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABOIUN010000133.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313003 SAMN35448676-rid18234113.denovo.138, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABOIUN010000184.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313003 SAMN35448676-rid18234113.guided.149, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABOIUN010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313003 SAMN35448676-rid18234113.denovo.073, whole genome shotgun sequence	21329..22168	Sulfamethoxazole	U12338	sul1	100	840/840	ABOIUN010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313003 SAMN35448676-rid18234113.guided.072, whole genome shotgun sequence	2393..3232	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOIUN010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313003 SAMN35448676-rid18234113.denovo.073, whole genome shotgun sequence	7613..8812	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIUN010000180.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313003 SAMN35448676-rid18234113.guided.072, whole genome shotgun sequence	15749..16948	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOIUN010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313003 SAMN35448676-rid18234113.denovo.095, whole genome shotgun sequence	13966..14525																																																						avrA	ABOIUN010000016.1	79228..80097	99.655	870	0						
GCA_033030505.1_PDT001763356.1_genomic.fna	Salmonella_enterica	0.5198	47.323 KB	34	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIUP010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313004 SAMN35448677-rid18234103.denovo.053, whole genome shotgun sequence	15491..15928	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIUP010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313004 SAMN35448677-rid18234103.denovo.056, whole genome shotgun sequence	4033..4869	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOIUP010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313004 SAMN35448677-rid18234103.denovo.056, whole genome shotgun sequence	3231..4033	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOIUP010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313004 SAMN35448677-rid18234103.denovo.056, whole genome shotgun sequence	3230..4033	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOIUP010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313004 SAMN35448677-rid18234103.denovo.056, whole genome shotgun sequence	3230..4033	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOIUP010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313004 SAMN35448677-rid18234103.denovo.056, whole genome shotgun sequence	3230..4033	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABOIUP010000235.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313004 SAMN35448677-rid18234103.guided.114, whole genome shotgun sequence	4074..4910	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOIUP010000235.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313004 SAMN35448677-rid18234103.guided.114, whole genome shotgun sequence	3272..4074	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOIUP010000235.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313004 SAMN35448677-rid18234103.guided.114, whole genome shotgun sequence	3271..4074	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOIUP010000235.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313004 SAMN35448677-rid18234103.guided.114, whole genome shotgun sequence	3271..4074	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOIUP010000235.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313004 SAMN35448677-rid18234103.guided.114, whole genome shotgun sequence	3271..4074	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABOIUP010000236.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313004 SAMN35448677-rid18234103.guided.118, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOIUP010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313004 SAMN35448677-rid18234103.denovo.043, whole genome shotgun sequence	23143..23469	enterobacteriales	IncHI2A	99.52	630 / 630	ABOIUP010000170.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313004 SAMN35448677-rid18234103.denovo.174, whole genome shotgun sequence	545..1174		enterobacteriales	IncX1	100	373 / 373	ABOIUP010000173.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22313004 SAMN35448677-rid18234103.denovo.177, whole genome shotgun sequence	2218..2590																																									avrA	ABOIUP010000031.1	39489..40358	99.655	870	0						
GCA_033030615.1_PDT001763355.1_genomic.fna	Salmonella_enterica	0.5221	106.392 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIUO010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.denovo.001, whole genome shotgun sequence	575031..575468	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOIUO010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.denovo.051, whole genome shotgun sequence	22720..23511	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIUO010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.denovo.051, whole genome shotgun sequence	22720..23511	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOIUO010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.denovo.070, whole genome shotgun sequence	4224..5249	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOIUO010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.denovo.070, whole genome shotgun sequence	3219..3995	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOIUO010000104.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.guided.030, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOIUO010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.guided.071, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIUO010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.guided.071, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOIUO010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.guided.078, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOIUO010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.guided.078, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOIUO010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.denovo.076, whole genome shotgun sequence	3786..4999	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOIUO010000110.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.guided.083, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOIUO010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.denovo.051, whole genome shotgun sequence	21376..22215	Sulfamethoxazole	U12338	sul1	100	840/840	ABOIUO010000108.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.guided.071, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOIUO010000049.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.denovo.051, whole genome shotgun sequence	7660..8859	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIUO010000107.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.guided.067, whole genome shotgun sequence	1993..3192	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOIUO010000077.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22313002 SAMN35448675-rid18234093.denovo.084, whole genome shotgun sequence	983..1542																																																						avrA	ABOIUO010000006.1	124124..124993	99.655	870	0						
GCA_033031055.1_PDT001762162.1_genomic.fna	Salmonella_enterica	0.5205	174.595 KB	9	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIVE010000001.1 Salmonella enterica strain PNUSAS351945 SAMN35447052-rid18233923.denovo.01, whole genome shotgun sequence	261882..262319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIVE010000071.1 Salmonella enterica strain PNUSAS351945 SAMN35447052-rid18233923.guided.61, whole genome shotgun sequence	973..1410	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033031935.1_PDT001762161.1_genomic.fna	Salmonella_enterica	0.5207	394.679 KB	5	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOIVG010000003.1 Salmonella enterica strain PNUSAS351946 SAMN35447046-rid18233913.denovo.03, whole genome shotgun sequence	398418..398855	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOIVG010000033.1 Salmonella enterica strain PNUSAS351946 SAMN35447046-rid18233913.guided.22, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABOIVG010000026.1 Salmonella enterica strain PNUSAS351946 SAMN35447046-rid18233913.denovo.29, whole genome shotgun sequence	1293..1423																																																						avrA	ABOIVG010000004.1	154047..154916	98.851	870	0						
GCA_033031955.1_PDT001762159.1_genomic.fna	Salmonella_enterica	0.5213	268.244 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIVI010000001.1 Salmonella enterica strain PNUSAS351951 SAMN35447051-rid18233893.denovo.01, whole genome shotgun sequence	481437..481874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIVI010000034.1 Salmonella enterica strain PNUSAS351951 SAMN35447051-rid18233893.guided.23, whole genome shotgun sequence	11870..12307	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIVI010000018.1 Salmonella enterica strain PNUSAS351951 SAMN35447051-rid18233893.denovo.18, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABOIVI010000018.1 Salmonella enterica strain PNUSAS351951 SAMN35447051-rid18233893.denovo.18, whole genome shotgun sequence	53092..53353																																																avrA	ABOIVI010000002.1	553636..554505	99.54	870	0						
GCA_033031975.1_PDT001762163.1_genomic.fna	Salmonella_enterica	0.5216	392.908 KB	3	aroC_10,dnaN_71,hemD_43,hisD_12,purE_15,sucA_20,thrA_18	4851	8:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_71	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_18	8	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Kottbus		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOIVF010000001.1 Salmonella enterica strain PNUSAS351955 SAMN35447049-rid18233933.denovo.01, whole genome shotgun sequence	1035514..1035951	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOIVF010000025.1 Salmonella enterica strain PNUSAS351955 SAMN35447049-rid18233933.guided.17, whole genome shotgun sequence	10647..11084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIVF010000004.1	173508..174377	99.54	870	0						
GCA_033031995.1_PDT001762160.1_genomic.fna	Salmonella_enterica	0.5212	376.308 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIVH010000001.1 Salmonella enterica strain PNUSAS351954 SAMN35447050-rid18233903.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIVH010000032.1 Salmonella enterica strain PNUSAS351954 SAMN35447050-rid18233903.guided.23, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIVH010000022.1 Salmonella enterica strain PNUSAS351954 SAMN35447050-rid18233903.denovo.24, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOIVH010000017.1 Salmonella enterica strain PNUSAS351954 SAMN35447050-rid18233903.denovo.17, whole genome shotgun sequence	4416..4677																																																avrA	ABOIVH010000002.1	553075..553944	99.54	870	0						
GCA_033032015.1_PDT001762158.1_genomic.fna	Salmonella_enterica	0.5208	383.346 KB	5	aroC_417,dnaN_216,hemD_8,hisD_163,purE_140,sucA_207,thrA_86	3113	30:i:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_417	dnaN	100	100	dnaN_216	hemD	100	100	hemD_8	hisD	100	100	hisD_163	purE	100	100	purE_140	sucA	100	100	sucA_207	thrA	100	100	thrA_86	30	i	l,w	Salmonella enterica subspecies enterica (subspecies I)	Soerenga		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOIVJ010000004.1 Salmonella enterica strain PNUSAS351953 SAMN35447048-rid18233883.denovo.04, whole genome shotgun sequence	389232..389669	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOIVJ010000040.1 Salmonella enterica strain PNUSAS351953 SAMN35447048-rid18233883.guided.22, whole genome shotgun sequence	15862..16299	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIVJ010000002.1	140402..141271	99.655	870	0						
GCA_033032095.1_PDT001762157.1_genomic.fna	Salmonella_enterica	0.5226	216.561 KB	4	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIVK010000001.1 Salmonella enterica strain PNUSAS351956 SAMN35447047-rid18233873.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOIVK010000035.1 Salmonella enterica strain PNUSAS351956 SAMN35447047-rid18233873.guided.26, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033032135.1_PDT001762156.1_genomic.fna	Salmonella_enterica	0.5202	230.376 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIVL010000001.1 Salmonella enterica strain PNUSAS351950 SAMN35447043-rid18233863.denovo.01, whole genome shotgun sequence	146795..147232	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIVL010000044.1 Salmonella enterica strain PNUSAS351950 SAMN35447043-rid18233863.guided.32, whole genome shotgun sequence	14001..14438	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIVL010000026.1 Salmonella enterica strain PNUSAS351950 SAMN35447043-rid18233863.denovo.26, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOIVL010000026.1 Salmonella enterica strain PNUSAS351950 SAMN35447043-rid18233863.denovo.26, whole genome shotgun sequence	12910..13171		enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABOIVL010000022.1 Salmonella enterica strain PNUSAS351950 SAMN35447043-rid18233863.denovo.22, whole genome shotgun sequence	52624..52945																																									avrA	ABOIVL010000007.1	141082..141951	99.54	870	0						
GCA_033032155.1_PDT001762155.1_genomic.fna	Salmonella_enterica	0.5203	400.843 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		4	Col(pHAD28),IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIVM010000001.1 Salmonella enterica strain PNUSAS351952 SAMN35447045-rid18233853.denovo.01, whole genome shotgun sequence	692528..692965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIVM010000035.1 Salmonella enterica strain PNUSAS351952 SAMN35447045-rid18233853.guided.25, whole genome shotgun sequence	4008..4445	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOIVM010000025.1 Salmonella enterica strain PNUSAS351952 SAMN35447045-rid18233853.denovo.28, whole genome shotgun sequence	2190..2834	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOIVM010000036.1 Salmonella enterica strain PNUSAS351952 SAMN35447045-rid18233853.guided.29, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOIVM010000025.1 Salmonella enterica strain PNUSAS351952 SAMN35447045-rid18233853.denovo.28, whole genome shotgun sequence	1534..1664	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIVM010000022.1 Salmonella enterica strain PNUSAS351952 SAMN35447045-rid18233853.denovo.23, whole genome shotgun sequence	6825..7467		enterobacteriales	IncFII(S)	100	262 / 262	ABOIVM010000016.1 Salmonella enterica strain PNUSAS351952 SAMN35447045-rid18233853.denovo.16, whole genome shotgun sequence	3859..4120		enterobacteriales	IncX1	98.93	374 / 374	ABOIVM010000018.1 Salmonella enterica strain PNUSAS351952 SAMN35447045-rid18233853.denovo.18, whole genome shotgun sequence	30449..30822																																		avrA	ABOIVM010000002.1	553187..554056	99.54	870	0						
GCA_033032205.1_PDT001762154.1_genomic.fna	Salmonella_enterica	0.5209	227.963 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIVN010000001.1 Salmonella enterica strain PNUSAS351949 SAMN35447044-rid18233843.denovo.01, whole genome shotgun sequence	170829..171266	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIVN010000041.1 Salmonella enterica strain PNUSAS351949 SAMN35447044-rid18233843.guided.22, whole genome shotgun sequence	3994..4431	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIVN010000026.1 Salmonella enterica strain PNUSAS351949 SAMN35447044-rid18233843.denovo.27, whole genome shotgun sequence	5135..5777	enterobacteriales	IncFII(S)	100	262 / 262	ABOIVN010000028.1 Salmonella enterica strain PNUSAS351949 SAMN35447044-rid18233843.denovo.31, whole genome shotgun sequence	3403..3664																																																avrA	ABOIVN010000007.1	140720..141589	99.54	870	0						
GCA_033032225.1_PDT001762153.1_genomic.fna	Salmonella_enterica	0.5223	381.231 KB	4	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOIVO010000001.1 Salmonella enterica strain PNUSAS351947 SAMN35447040-rid18233833.denovo.01, whole genome shotgun sequence	346600..347037	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOIVO010000037.1 Salmonella enterica strain PNUSAS351947 SAMN35447040-rid18233833.guided.28, whole genome shotgun sequence	1799..2236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOIVO010000031.1 Salmonella enterica strain PNUSAS351947 SAMN35447040-rid18233833.denovo.34, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABOIVO010000028.1 Salmonella enterica strain PNUSAS351947 SAMN35447040-rid18233833.denovo.31, whole genome shotgun sequence	3175..3285																																																avrA	ABOIVO010000006.1	95269..96138	99.425	870	0						
GCA_033032255.1_PDT001762152.1_genomic.fna	Salmonella_enterica	0.5223	452.297 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIVP010000003.1 Salmonella enterica strain PNUSAS351944 SAMN35447041-rid18233823.denovo.03, whole genome shotgun sequence	263841..264278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOIVP010000031.1 Salmonella enterica strain PNUSAS351944 SAMN35447041-rid18233823.guided.17, whole genome shotgun sequence	29687..30124	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIVP010000001.1	740458..741326	99.655	870	0						
GCA_033032275.1_PDT001762151.1_genomic.fna	Salmonella_enterica	0.5205	372.865 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIVQ010000001.1 Salmonella enterica strain PNUSAS351948 SAMN35447042-rid18233813.denovo.01, whole genome shotgun sequence	477368..477805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIVQ010000034.1 Salmonella enterica strain PNUSAS351948 SAMN35447042-rid18233813.guided.20, whole genome shotgun sequence	30271..30708	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIVQ010000013.1	114662..115530	99.195	870	0						
GCA_033032415.1_PDT001759951.1_genomic.fna	Salmonella_enterica	0.5137	166.527 KB	11	aroC_33,dnaN_173,hemD_30,hisD_26,purE_141,sucA_275,thrA_28	1256	48:i:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_173	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_141	sucA	100	100	sucA_275	thrA	100	100	thrA_28	48	i	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:i:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIVX010000017.1 Salmonella enterica strain PNUSAS351939 SAMN35441005-rid18233663.denovo.17, whole genome shotgun sequence	105970..106407	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIVX010000085.1 Salmonella enterica strain PNUSAS351939 SAMN35441005-rid18233663.guided.54, whole genome shotgun sequence	4488..4925	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIVX010000009.1	63612..64481	96.667	870	0						
GCA_033032465.1_PDT001759950.1_genomic.fna	Salmonella_enterica	0.5205	605 KB	4	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	4	aac(6')-Iaa,aac(6')-Iaa,blaKPC-2,blaKPC-2,qnrS1,qnrS1,tet(A),tet(A)	1	parC_p.T57S	1	pKPC-CAV1193	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOIVY010000001.1 Salmonella enterica strain PNUSAS351942 SAMN35440998-rid18233653.denovo.01, whole genome shotgun sequence	51342..51779	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOIVY010000033.1 Salmonella enterica strain PNUSAS351942 SAMN35440998-rid18233653.guided.22, whole genome shotgun sequence	4734..5171	Amikacin, Tobramycin	NC_003197	blaKPC-2	100	882/882	ABOIVY010000014.1 Salmonella enterica strain PNUSAS351942 SAMN35440998-rid18233653.denovo.14, whole genome shotgun sequence	6263..7144	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Aztreonam, Cefepime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	AY034847	blaKPC-2	100	882/882	ABOIVY010000031.1 Salmonella enterica strain PNUSAS351942 SAMN35440998-rid18233653.guided.20, whole genome shotgun sequence	18729..19610	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Aztreonam, Cefepime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	AY034847	qnrS1	100	657/657	ABOIVY010000014.1 Salmonella enterica strain PNUSAS351942 SAMN35440998-rid18233653.denovo.14, whole genome shotgun sequence	22141..22797	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOIVY010000031.1 Salmonella enterica strain PNUSAS351942 SAMN35440998-rid18233653.guided.20, whole genome shotgun sequence	3076..3732	Ciprofloxacin	AB187515	tet(A)	100	1200/1200	ABOIVY010000022.1 Salmonella enterica strain PNUSAS351942 SAMN35440998-rid18233653.denovo.27, whole genome shotgun sequence	1448..2647	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIVY010000035.1 Salmonella enterica strain PNUSAS351942 SAMN35440998-rid18233653.guided.26, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pKPC-CAV1193	98.69	612 / 612	ABOIVY010000014.1 Salmonella enterica strain PNUSAS351942 SAMN35440998-rid18233653.denovo.14, whole genome shotgun sequence	173..784																																																						avrA	ABOIVY010000003.1	149011..149880	99.195	870	0						
GCA_033032485.1_PDT001759949.1_genomic.fna	Salmonella_enterica	0.5216	217.618 KB	8	aroC_20,dnaN_4,hemD_23,hisD_14,purE_16,sucA_19,thrA_140	423	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_20	dnaN	100	100	dnaN_4	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_19	thrA	100	100	thrA_140	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIVZ010000012.1 Salmonella enterica strain PNUSAS351933 SAMN35441004-rid18233643.denovo.12, whole genome shotgun sequence	37880..38317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIVZ010000044.1 Salmonella enterica strain PNUSAS351933 SAMN35441004-rid18233643.guided.40, whole genome shotgun sequence	1008..1445	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033032505.1_PDT001759947.1_genomic.fna	Salmonella_enterica	0.5217	390.651 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIWB010000001.1 Salmonella enterica strain PNUSAS351937 SAMN35441000-rid18233623.denovo.01, whole genome shotgun sequence	1374582..1375019	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIWB010000018.1 Salmonella enterica strain PNUSAS351937 SAMN35441000-rid18233623.denovo.21, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOIWB010000018.1 Salmonella enterica strain PNUSAS351937 SAMN35441000-rid18233623.denovo.21, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOIWB010000018.1 Salmonella enterica strain PNUSAS351937 SAMN35441000-rid18233623.denovo.21, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOIWB010000018.1 Salmonella enterica strain PNUSAS351937 SAMN35441000-rid18233623.denovo.21, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOIWB010000018.1 Salmonella enterica strain PNUSAS351937 SAMN35441000-rid18233623.denovo.21, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOIWB010000031.1 Salmonella enterica strain PNUSAS351937 SAMN35441000-rid18233623.guided.16, whole genome shotgun sequence	21981..22418	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIWB010000034.1 Salmonella enterica strain PNUSAS351937 SAMN35441000-rid18233623.guided.24, whole genome shotgun sequence	860..1696	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOIWB010000034.1 Salmonella enterica strain PNUSAS351937 SAMN35441000-rid18233623.guided.24, whole genome shotgun sequence	58..860	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOIWB010000034.1 Salmonella enterica strain PNUSAS351937 SAMN35441000-rid18233623.guided.24, whole genome shotgun sequence	57..860	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOIWB010000034.1 Salmonella enterica strain PNUSAS351937 SAMN35441000-rid18233623.guided.24, whole genome shotgun sequence	57..860	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOIWB010000034.1 Salmonella enterica strain PNUSAS351937 SAMN35441000-rid18233623.guided.24, whole genome shotgun sequence	57..860	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOIWB010000019.1 Salmonella enterica strain PNUSAS351937 SAMN35441000-rid18233623.denovo.23, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIWB010000033.1 Salmonella enterica strain PNUSAS351937 SAMN35441000-rid18233623.guided.22, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIWB010000007.1	140211..141080	99.655	870	0						
GCA_033032525.1_PDT001759946.1_genomic.fna	Salmonella_enterica	0.521	443.923 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIWC010000001.1 Salmonella enterica strain PNUSAS351943 SAMN35441008-rid18233613.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIWC010000028.1 Salmonella enterica strain PNUSAS351943 SAMN35441008-rid18233613.guided.10, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOIWC010000020.1 Salmonella enterica strain PNUSAS351943 SAMN35441008-rid18233613.denovo.23, whole genome shotgun sequence	547..675	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOIWC010000012.1 Salmonella enterica strain PNUSAS351943 SAMN35441008-rid18233613.denovo.13, whole genome shotgun sequence	72030..72171																																																avrA	ABOIWC010000002.1	39350..40219	98.966	870	0						
GCA_033032535.1_PDT001759948.1_genomic.fna	Salmonella_enterica	0.5219	681.385 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIWA010000001.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.denovo.01, whole genome shotgun sequence	639180..639617	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOIWA010000021.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.denovo.26, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOIWA010000031.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.guided.14, whole genome shotgun sequence	8970..9407	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOIWA010000034.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.guided.25, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOIWA010000021.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.denovo.26, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOIWA010000034.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.guided.25, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOIWA010000019.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.denovo.23, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOIWA010000033.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.guided.22, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOIWA010000018.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.denovo.21, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOIWA010000035.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOIWA010000021.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.denovo.26, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOIWA010000034.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.guided.25, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOIWA010000024.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.denovo.32, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOIWA010000037.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.guided.31, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOIWA010000018.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.denovo.21, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOIWA010000036.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.guided.28, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOIWA010000018.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.denovo.21, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOIWA010000036.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.guided.28, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOIWA010000015.1 Salmonella enterica strain PNUSAS351935 SAMN35441002-rid18233633.denovo.18, whole genome shotgun sequence	4434..4684																																																						avrA	ABOIWA010000003.1	586519..587388	99.77	870	0						
GCA_033032565.1_PDT001759944.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIWE010000001.1 Salmonella enterica strain PNUSAS351941 SAMN35441007-rid18233593.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIWE010000019.1 Salmonella enterica strain PNUSAS351941 SAMN35441007-rid18233593.guided.14, whole genome shotgun sequence	1441..1878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIWE010000012.1 Salmonella enterica strain PNUSAS351941 SAMN35441007-rid18233593.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOIWE010000012.1 Salmonella enterica strain PNUSAS351941 SAMN35441007-rid18233593.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABOIWE010000002.1	553642..554511	99.54	870	0						
GCA_033032585.1_PDT001759945.1_genomic.fna	Salmonella_enterica	0.5219	341.383 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5!,purE_5!,sucA_9,thrA_2	Unknown	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5!	purE	100	100	purE_5!	sucA	100	100	sucA_9	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIWD010000004.1 Salmonella enterica strain PNUSAS351936 SAMN35441009-rid18233603.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIWD010000035.1 Salmonella enterica strain PNUSAS351936 SAMN35441009-rid18233603.guided.22, whole genome shotgun sequence	37535..37972	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOIWD010000015.1 Salmonella enterica strain PNUSAS351936 SAMN35441009-rid18233603.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOIWD010000015.1 Salmonella enterica strain PNUSAS351936 SAMN35441009-rid18233603.denovo.16, whole genome shotgun sequence	30386..30647																																																avrA	ABOIWD010000001.1	479201..480069	100	869	0						
GCA_033032625.1_PDT001759942.1_genomic.fna	Salmonella_enterica	0.5201	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIWG010000001.1 Salmonella enterica strain PNUSAS351938 SAMN35441006-rid18233573.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIWG010000026.1 Salmonella enterica strain PNUSAS351938 SAMN35441006-rid18233573.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIWG010000012.1 Salmonella enterica strain PNUSAS351938 SAMN35441006-rid18233573.denovo.14, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABOIWG010000012.1 Salmonella enterica strain PNUSAS351938 SAMN35441006-rid18233573.denovo.14, whole genome shotgun sequence	53092..53353		enterobacteriales	IncX1	98.93	374 / 374	ABOIWG010000013.1 Salmonella enterica strain PNUSAS351938 SAMN35441006-rid18233573.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABOIWG010000002.1	553690..554559	99.54	870	0						
GCA_033032645.1_PDT001759943.1_genomic.fna	Salmonella_enterica	0.521	720.971 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOIWF010000001.1 Salmonella enterica strain PNUSAS351932 SAMN35440999-rid18233583.denovo.01, whole genome shotgun sequence	268870..269307	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOIWF010000019.1 Salmonella enterica strain PNUSAS351932 SAMN35440999-rid18233583.guided.15, whole genome shotgun sequence	14118..14555	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIWF010000004.1	160644..161513	99.54	870	0						
GCA_033032665.1_PDT001759941.1_genomic.fna	Salmonella_enterica	0.5213	437.192 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIWH010000001.1 Salmonella enterica strain PNUSAS351940 SAMN35441003-rid18233563.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIWH010000029.1 Salmonella enterica strain PNUSAS351940 SAMN35441003-rid18233563.guided.13, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOIWH010000020.1 Salmonella enterica strain PNUSAS351940 SAMN35441003-rid18233563.denovo.23, whole genome shotgun sequence	547..675	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOIWH010000012.1 Salmonella enterica strain PNUSAS351940 SAMN35441003-rid18233563.denovo.14, whole genome shotgun sequence	70673..70814																																																avrA	ABOIWH010000007.1	94986..95855	98.966	870	0						
GCA_033032685.1_PDT001759940.1_genomic.fna	Salmonella_enterica	0.5207	285.767 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		3	ColRNAI,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIWJ010000001.1 Salmonella enterica strain PNUSAS351934 SAMN35441001-rid18233553.denovo.01, whole genome shotgun sequence	581404..581841	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIWJ010000047.1 Salmonella enterica strain PNUSAS351934 SAMN35441001-rid18233553.guided.36, whole genome shotgun sequence	3268..3705	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOIWJ010000030.1 Salmonella enterica strain PNUSAS351934 SAMN35441001-rid18233553.denovo.32, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOIWJ010000046.1 Salmonella enterica strain PNUSAS351934 SAMN35441001-rid18233553.guided.34, whole genome shotgun sequence	7693..8898	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	ColRNAI	90.91	132 / 130	ABOIWJ010000038.1 Salmonella enterica strain PNUSAS351934 SAMN35441001-rid18233553.denovo.42, whole genome shotgun sequence	1304..1434	enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOIWJ010000031.1 Salmonella enterica strain PNUSAS351934 SAMN35441001-rid18233553.denovo.33, whole genome shotgun sequence	2113..2794		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOIWJ010000023.1 Salmonella enterica strain PNUSAS351934 SAMN35441001-rid18233553.denovo.23, whole genome shotgun sequence	49693..50189																																									avrA	ABOIWJ010000002.1	621476..622345	99.885	870	0						
GCA_033032745.1_PDT001759924.1_genomic.fna	Salmonella_enterica	0.5219	581.396 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIWM010000001.1 Salmonella enterica strain PNUSAS351929 SAMN35440492-rid18233393.denovo.01, whole genome shotgun sequence	458318..458755	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOIWM010000022.1 Salmonella enterica strain PNUSAS351929 SAMN35440492-rid18233393.guided.13, whole genome shotgun sequence	26541..26978	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIWM010000007.1	174012..174881	99.655	870	0						
GCA_033032765.1_PDT001759925.1_genomic.fna	Salmonella_enterica	0.5221	356.749 KB	6	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOIWL010000004.1 Salmonella enterica strain PNUSAS351930 SAMN35440489-rid18233403.denovo.04, whole genome shotgun sequence	252456..252893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIWL010000026.1 Salmonella enterica strain PNUSAS351930 SAMN35440489-rid18233403.denovo.30, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOIWL010000026.1 Salmonella enterica strain PNUSAS351930 SAMN35440489-rid18233403.denovo.30, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOIWL010000026.1 Salmonella enterica strain PNUSAS351930 SAMN35440489-rid18233403.denovo.30, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOIWL010000026.1 Salmonella enterica strain PNUSAS351930 SAMN35440489-rid18233403.denovo.30, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOIWL010000026.1 Salmonella enterica strain PNUSAS351930 SAMN35440489-rid18233403.denovo.30, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOIWL010000044.1 Salmonella enterica strain PNUSAS351930 SAMN35440489-rid18233403.guided.22, whole genome shotgun sequence	10601..11038	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOIWL010000046.1 Salmonella enterica strain PNUSAS351930 SAMN35440489-rid18233403.guided.29, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOIWL010000046.1 Salmonella enterica strain PNUSAS351930 SAMN35440489-rid18233403.guided.29, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOIWL010000046.1 Salmonella enterica strain PNUSAS351930 SAMN35440489-rid18233403.guided.29, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOIWL010000046.1 Salmonella enterica strain PNUSAS351930 SAMN35440489-rid18233403.guided.29, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOIWL010000046.1 Salmonella enterica strain PNUSAS351930 SAMN35440489-rid18233403.guided.29, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOIWL010000025.1 Salmonella enterica strain PNUSAS351930 SAMN35440489-rid18233403.denovo.28, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIWL010000047.1 Salmonella enterica strain PNUSAS351930 SAMN35440489-rid18233403.guided.31, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABOIWL010000031.1 Salmonella enterica strain PNUSAS351930 SAMN35440489-rid18233403.denovo.36, whole genome shotgun sequence	805..997																																																						avrA	ABOIWL010000009.1	39546..40415	99.655	870	0						
GCA_033033755.1_PDT001759922.1_genomic.fna	Salmonella_enterica	0.5222	344.947 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIWN010000001.1 Salmonella enterica strain PNUSAS351931 SAMN35440490-rid18233383.denovo.01, whole genome shotgun sequence	173787..174224	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIWN010000042.1 Salmonella enterica strain PNUSAS351931 SAMN35440490-rid18233383.guided.28, whole genome shotgun sequence	3120..3557	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOIWN010000028.1 Salmonella enterica strain PNUSAS351931 SAMN35440490-rid18233383.denovo.31, whole genome shotgun sequence	547..675																																																						avrA	ABOIWN010000006.1	146984..147853	98.966	870	0						
GCA_033034375.1_PDT001759923.1_genomic.fna	Salmonella_enterica	0.5209	180.298 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIXH010000002.1 Salmonella enterica strain PNUSAS351928 SAMN35440491-rid18232593.denovo.02, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOIXH010000061.1 Salmonella enterica strain PNUSAS351928 SAMN35440491-rid18232593.denovo.68, whole genome shotgun sequence	17..796	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABOIXH010000069.1 Salmonella enterica strain PNUSAS351928 SAMN35440491-rid18232593.guided.36, whole genome shotgun sequence	24942..25379	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOIXH010000074.1 Salmonella enterica strain PNUSAS351928 SAMN35440491-rid18232593.guided.65, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOIXH010000056.1 Salmonella enterica strain PNUSAS351928 SAMN35440491-rid18232593.denovo.62, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOIXH010000073.1 Salmonella enterica strain PNUSAS351928 SAMN35440491-rid18232593.guided.60, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	99.92	1215/1215	ABOIXH010000043.1 Salmonella enterica strain PNUSAS351928 SAMN35440491-rid18232593.denovo.47, whole genome shotgun sequence	5127..6341	Chloramphenicol, Florfenicol	AF118107	floR	99.92	1215/1215	ABOIXH010000072.1 Salmonella enterica strain PNUSAS351928 SAMN35440491-rid18232593.guided.51, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOIXH010000071.1 Salmonella enterica strain PNUSAS351928 SAMN35440491-rid18232593.guided.45, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABOIXH010000043.1 Salmonella enterica strain PNUSAS351928 SAMN35440491-rid18232593.denovo.47, whole genome shotgun sequence	3015..4190	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABOIXH010000072.1 Salmonella enterica strain PNUSAS351928 SAMN35440491-rid18232593.guided.51, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	IncFIB(S)	100	643 / 643	ABOIXH010000026.1 Salmonella enterica strain PNUSAS351928 SAMN35440491-rid18232593.denovo.26, whole genome shotgun sequence	36050..36692	enterobacteriales	IncFII(S)	100	262 / 262	ABOIXH010000026.1 Salmonella enterica strain PNUSAS351928 SAMN35440491-rid18232593.denovo.26, whole genome shotgun sequence	51777..52038																																																avrA	ABOIXH010000001.1	538440..539309	99.885	870	0						
GCA_033034615.1_PDT001759813.1_genomic.fna	Salmonella_enterica	0.5208	238.813 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(B),tet(B)	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIXU010000001.1 Salmonella enterica strain PNUSAS351863 SAMN35440217-rid18232223.denovo.01, whole genome shotgun sequence	458968..459405	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOIXU010000054.1 Salmonella enterica strain PNUSAS351863 SAMN35440217-rid18232223.guided.23, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOIXU010000046.1 Salmonella enterica strain PNUSAS351863 SAMN35440217-rid18232223.denovo.51, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOIXU010000058.1 Salmonella enterica strain PNUSAS351863 SAMN35440217-rid18232223.guided.50, whole genome shotgun sequence	920..1564	Ciprofloxacin	EU432277	tet(B)	100	1206/1206	ABOIXU010000036.1 Salmonella enterica strain PNUSAS351863 SAMN35440217-rid18232223.denovo.39, whole genome shotgun sequence	10940..12145	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOIXU010000057.1 Salmonella enterica strain PNUSAS351863 SAMN35440217-rid18232223.guided.40, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	100	131 / 131	ABOIXU010000046.1 Salmonella enterica strain PNUSAS351863 SAMN35440217-rid18232223.denovo.51, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOIXU010000058.1 Salmonella enterica strain PNUSAS351863 SAMN35440217-rid18232223.guided.50, whole genome shotgun sequence	264..394																																																avrA	ABOIXU010000002.1	93865..94734	99.885	870	0						
GCA_033035175.1_PDT001759811.1_genomic.fna	Salmonella_enterica	0.5206	406.451 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIXV010000001.1 Salmonella enterica strain PNUSAS351858 SAMN35440204-rid18232203.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIXV010000025.1 Salmonella enterica strain PNUSAS351858 SAMN35440204-rid18232203.guided.15, whole genome shotgun sequence	42731..43168	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABOIXV010000015.1 Salmonella enterica strain PNUSAS351858 SAMN35440204-rid18232203.denovo.16, whole genome shotgun sequence	32011..32384																																																						avrA	ABOIXV010000002.1	553690..554559	99.54	870	0						
GCA_033035195.1_PDT001759809.1_genomic.fna	Salmonella_enterica	0.5211	433.563 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIXY010000001.1 Salmonella enterica strain PNUSAS351860 SAMN35440211-rid18232183.denovo.01, whole genome shotgun sequence	747215..747652	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABOIXY010000024.1 Salmonella enterica strain PNUSAS351860 SAMN35440211-rid18232183.denovo.26, whole genome shotgun sequence	3237..4067	Streptomycin	CP000971	aph(3'')-Ib	100	780/804	ABOIXY010000024.1 Salmonella enterica strain PNUSAS351860 SAMN35440211-rid18232183.denovo.26, whole genome shotgun sequence	4073..4852	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABOIXY010000034.1 Salmonella enterica strain PNUSAS351860 SAMN35440211-rid18232183.guided.30, whole genome shotgun sequence	2112..2549	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABOIXY010000036.1 Salmonella enterica strain PNUSAS351860 SAMN35440211-rid18232183.guided.33, whole genome shotgun sequence	842..1672	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABOIXY010000036.1 Salmonella enterica strain PNUSAS351860 SAMN35440211-rid18232183.guided.33, whole genome shotgun sequence	33..836	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOIXY010000019.1 Salmonella enterica strain PNUSAS351860 SAMN35440211-rid18232183.denovo.20, whole genome shotgun sequence	21231..22091	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOIXY010000032.1 Salmonella enterica strain PNUSAS351860 SAMN35440211-rid18232183.guided.28, whole genome shotgun sequence	3517..4377	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOIXY010000019.1 Salmonella enterica strain PNUSAS351860 SAMN35440211-rid18232183.denovo.20, whole genome shotgun sequence	28..843	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOIXY010000033.1 Salmonella enterica strain PNUSAS351860 SAMN35440211-rid18232183.guided.29, whole genome shotgun sequence	2992..3807	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOIXY010000024.1 Salmonella enterica strain PNUSAS351860 SAMN35440211-rid18232183.denovo.26, whole genome shotgun sequence	984..2183	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOIXY010000035.1 Salmonella enterica strain PNUSAS351860 SAMN35440211-rid18232183.guided.31, whole genome shotgun sequence	988..2187	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIXY010000020.1 Salmonella enterica strain PNUSAS351860 SAMN35440211-rid18232183.denovo.21, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOIXY010000021.1 Salmonella enterica strain PNUSAS351860 SAMN35440211-rid18232183.denovo.23, whole genome shotgun sequence	3419..3680		enterobacteriales	IncX1	95.76	377 / 377	ABOIXY010000019.1 Salmonella enterica strain PNUSAS351860 SAMN35440211-rid18232183.denovo.20, whole genome shotgun sequence	11132..11508																																									avrA	ABOIXY010000002.1	553372..554241	99.54	870	0						
GCA_033035215.1_PDT001759808.1_genomic.fna	Salmonella_enterica	0.5193	309.652 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	11	aac(6')-Iaa,aadA1,aadA1,aph(3')-IIa,aac(6')-Iaa,aadA1,aadA1,aph(3')-IIa,blaOXA-10,blaOXA-10,fosA7,fosA7,floR,cmlA1,cmlA1,floR,qnrS1,qnrS1,ARR-2,ARR-2,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncX1	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIXZ010000001.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.denovo.01, whole genome shotgun sequence	151065..151502	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOIXZ010000032.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.denovo.36, whole genome shotgun sequence	730..1521	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIXZ010000032.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.denovo.36, whole genome shotgun sequence	730..1521	Spectinomycin, Streptomycin	JQ414041	aph(3')-IIa	100	795/795	ABOIXZ010000036.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.denovo.44, whole genome shotgun sequence	1457..2251	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	aac(6')-Iaa	97.95	438/438	ABOIXZ010000046.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.guided.23, whole genome shotgun sequence	30239..30676	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOIXZ010000050.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.guided.37, whole genome shotgun sequence	3510..4301	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIXZ010000050.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.guided.37, whole genome shotgun sequence	3510..4301	Spectinomycin, Streptomycin	JQ414041	aph(3')-IIa	100	795/795	ABOIXZ010000052.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.guided.42, whole genome shotgun sequence	1498..2292	Kanamycin, Neomycin, Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin	V00618	blaOXA-10	100	801/801	ABOIXZ010000032.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.denovo.36, whole genome shotgun sequence	1538..2338	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaOXA-10	100	801/801	ABOIXZ010000050.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.guided.37, whole genome shotgun sequence	2693..3493	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	fosA7	97.16	423/423	ABOIXZ010000005.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOIXZ010000047.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.guided.29, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014	floR	98.19	1214/1215	ABOIXZ010000028.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.denovo.31, whole genome shotgun sequence	8125..9338	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.68	1260/1260	ABOIXZ010000032.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.denovo.36, whole genome shotgun sequence	2603..3862	Chloramphenicol	M64556	cmlA1	99.68	1260/1260	ABOIXZ010000050.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.guided.37, whole genome shotgun sequence	1169..2428	Chloramphenicol	M64556	floR	98.19	1214/1215	ABOIXZ010000051.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.guided.39, whole genome shotgun sequence	1827..3040	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABOIXZ010000028.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.denovo.31, whole genome shotgun sequence	1014..1670	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOIXZ010000053.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.guided.43, whole genome shotgun sequence	1055..1711	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABOIXZ010000032.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.denovo.36, whole genome shotgun sequence	4183..4635	Rifampicin	HQ141279	ARR-2	100	453/453	ABOIXZ010000050.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.guided.37, whole genome shotgun sequence	396..848	Rifampicin	HQ141279	tet(A)	99.92	1275/1275	ABOIXZ010000028.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.denovo.31, whole genome shotgun sequence	6250..7524	Doxycycline, Tetracycline	AF534183	tet(A)	99.92	1275/1275	ABOIXZ010000054.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.guided.45, whole genome shotgun sequence	449..1723	Doxycycline, Tetracycline	AF534183	dfrA14	100	474/474	ABOIXZ010000032.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.denovo.36, whole genome shotgun sequence	182..655	Trimethoprim	KF921535	dfrA14	100	474/474	ABOIXZ010000050.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.guided.37, whole genome shotgun sequence	4376..4849	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncX1	98.4	374 / 374	ABOIXZ010000029.1 Salmonella enterica strain PNUSAS351859 SAMN35440214-rid18232173.denovo.32, whole genome shotgun sequence	7364..7737																																																						avrA	ABOIXZ010000002.1	99263..100132	99.195	870	0						
GCA_033035235.1_PDT001759812.1_genomic.fna	Salmonella_enterica	0.5216	213.495 KB	6	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOIXW010000001.1 Salmonella enterica strain PNUSAS351864 SAMN35440216-rid18232213.denovo.01, whole genome shotgun sequence	727904..728341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOIXW010000044.1 Salmonella enterica strain PNUSAS351864 SAMN35440216-rid18232213.guided.26, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIXW010000002.1	153057..153926	99.195	870	0						
GCA_033035255.1_PDT001759810.1_genomic.fna	Salmonella_enterica	0.521	691.689 KB	3	aroC_50,dnaN_10,hemD_25,hisD_72,purE_10,sucA_13,thrA_4	414	9:e,h:1,5	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1D,blaTEM-1D	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_50	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	9	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Eastbourne		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOIXX010000002.1 Salmonella enterica strain PNUSAS351855 SAMN35440215-rid18232193.denovo.02, whole genome shotgun sequence	645701..646138	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.82	413/438	ABOIXX010000020.1 Salmonella enterica strain PNUSAS351855 SAMN35440215-rid18232193.guided.15, whole genome shotgun sequence	1..413	Amikacin, Tobramycin	NC_003197	blaTEM-1D	100	861/861	ABOIXX010000011.1 Salmonella enterica strain PNUSAS351855 SAMN35440215-rid18232193.denovo.11, whole genome shotgun sequence	7212..8072	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AF188200	blaTEM-1D	100	861/861	ABOIXX010000022.1 Salmonella enterica strain PNUSAS351855 SAMN35440215-rid18232193.guided.18, whole genome shotgun sequence	1314..2174	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AF188200																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.94	377 / 377	ABOIXX010000011.1 Salmonella enterica strain PNUSAS351855 SAMN35440215-rid18232193.denovo.11, whole genome shotgun sequence	14227..14603																																																						avrA	ABOIXX010000003.1	152397..153266	99.31	870	0						
GCA_033035275.1_PDT001759807.1_genomic.fna	Salmonella_enterica	0.5213	273.639 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOIYA010000001.1 Salmonella enterica strain PNUSAS351857 SAMN35440208-rid18232163.denovo.01, whole genome shotgun sequence	481486..481923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOIYA010000047.1 Salmonella enterica strain PNUSAS351857 SAMN35440208-rid18232163.guided.27, whole genome shotgun sequence	7534..7971	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOIYA010000024.1 Salmonella enterica strain PNUSAS351857 SAMN35440208-rid18232163.denovo.25, whole genome shotgun sequence	24670..25312	enterobacteriales	IncFII(S)	100	262 / 262	ABOIYA010000024.1 Salmonella enterica strain PNUSAS351857 SAMN35440208-rid18232163.denovo.25, whole genome shotgun sequence	9324..9585																																																avrA	ABOIYA010000002.1	209583..210452	99.885	870	0						
GCA_033035295.1_PDT001759806.1_genomic.fna	Salmonella_enterica	0.5203	264.951 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIYB010000001.1 Salmonella enterica strain PNUSAS351856 SAMN35440213-rid18232293.denovo.01, whole genome shotgun sequence	458981..459418	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOIYB010000033.1 Salmonella enterica strain PNUSAS351856 SAMN35440213-rid18232293.denovo.38, whole genome shotgun sequence	555..1370	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABOIYB010000036.1 Salmonella enterica strain PNUSAS351856 SAMN35440213-rid18232293.denovo.42, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIYB010000036.1 Salmonella enterica strain PNUSAS351856 SAMN35440213-rid18232293.denovo.42, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOIYB010000047.1 Salmonella enterica strain PNUSAS351856 SAMN35440213-rid18232293.guided.26, whole genome shotgun sequence	30260..30697	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOIYB010000051.1 Salmonella enterica strain PNUSAS351856 SAMN35440213-rid18232293.guided.37, whole genome shotgun sequence	1840..2655	Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	EU722351	aph(6)-Id	100	837/837	ABOIYB010000052.1 Salmonella enterica strain PNUSAS351856 SAMN35440213-rid18232293.guided.41, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOIYB010000052.1 Salmonella enterica strain PNUSAS351856 SAMN35440213-rid18232293.guided.41, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOIYB010000038.1 Salmonella enterica strain PNUSAS351856 SAMN35440213-rid18232293.denovo.45, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOIYB010000053.1 Salmonella enterica strain PNUSAS351856 SAMN35440213-rid18232293.guided.44, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOIYB010000036.1 Salmonella enterica strain PNUSAS351856 SAMN35440213-rid18232293.denovo.42, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOIYB010000052.1 Salmonella enterica strain PNUSAS351856 SAMN35440213-rid18232293.guided.41, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOIYB010000030.1 Salmonella enterica strain PNUSAS351856 SAMN35440213-rid18232293.denovo.34, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOIYB010000050.1 Salmonella enterica strain PNUSAS351856 SAMN35440213-rid18232293.guided.33, whole genome shotgun sequence	4117..5322	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncY	99.74	765 / 765	ABOIYB010000017.1 Salmonella enterica strain PNUSAS351856 SAMN35440213-rid18232293.denovo.17, whole genome shotgun sequence	63909..64673																																																						avrA	ABOIYB010000002.1	540741..541610	99.885	870	0						
GCA_033035315.1_PDT001759805.1_genomic.fna	Salmonella_enterica	0.522	328.585 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOIYC010000001.1 Salmonella enterica strain PNUSAS351850 SAMN35440203-rid18232153.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOIYC010000034.1 Salmonella enterica strain PNUSAS351850 SAMN35440203-rid18232153.guided.19, whole genome shotgun sequence	4705..5142	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIYC010000002.1	149828..150697	99.655	870	0						
GCA_033035335.1_PDT001759804.1_genomic.fna	Salmonella_enterica	0.5207	406.041 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIYD010000001.1 Salmonella enterica strain PNUSAS351852 SAMN35440212-rid18232143.denovo.01, whole genome shotgun sequence	813447..813884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIYD010000028.1 Salmonella enterica strain PNUSAS351852 SAMN35440212-rid18232143.guided.20, whole genome shotgun sequence	11102..11539	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIYD010000018.1 Salmonella enterica strain PNUSAS351852 SAMN35440212-rid18232143.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOIYD010000019.1 Salmonella enterica strain PNUSAS351852 SAMN35440212-rid18232143.denovo.21, whole genome shotgun sequence	3390..3651																																																avrA	ABOIYD010000002.1	552546..553415	99.54	870	0						
GCA_033035355.1_PDT001759803.1_genomic.fna	Salmonella_enterica	0.5196	296.338 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	11	aac(6')-Iaa,aph(3')-IIa,aadA1,aadA1,aac(6')-Iaa,aph(3')-IIa,aadA1,aadA1,blaOXA-10,blaOXA-10,fosA7,fosA7,floR,cmlA1,cmlA1,floR,qnrS1,qnrS1,ARR-2,ARR-2,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncX1	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIYE010000001.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.denovo.01, whole genome shotgun sequence	486111..486548	Amikacin, Tobramycin	NC_003197	aph(3')-IIa	100	795/795	ABOIYE010000025.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.denovo.28, whole genome shotgun sequence	14425..15219	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	aadA1	99.75	792/792	ABOIYE010000029.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.denovo.36, whole genome shotgun sequence	3046..3837	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIYE010000029.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.denovo.36, whole genome shotgun sequence	3046..3837	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.95	438/438	ABOIYE010000041.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.guided.16, whole genome shotgun sequence	19147..19584	Amikacin, Tobramycin	NC_003197	aph(3')-IIa	100	795/795	ABOIYE010000045.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.guided.32, whole genome shotgun sequence	4650..5444	Kanamycin, Neomycin, Paromomycin, Ribostamycin, Butiromycin, Gentamicin, Kanamycin, Neomycin	V00618	aadA1	99.75	792/792	ABOIYE010000047.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.guided.34, whole genome shotgun sequence	3087..3878	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOIYE010000047.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.guided.34, whole genome shotgun sequence	3087..3878	Spectinomycin, Streptomycin	JQ414041	blaOXA-10	100	801/801	ABOIYE010000029.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.denovo.36, whole genome shotgun sequence	2229..3029	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaOXA-10	100	801/801	ABOIYE010000047.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.guided.34, whole genome shotgun sequence	2270..3070	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	fosA7	97.16	423/423	ABOIYE010000006.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.denovo.06, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOIYE010000044.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.guided.31, whole genome shotgun sequence	6662..7084	Fosfomycin	LAPJ01000014	floR	98.19	1214/1215	ABOIYE010000026.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.denovo.29, whole genome shotgun sequence	8125..9338	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.68	1260/1260	ABOIYE010000029.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.denovo.36, whole genome shotgun sequence	705..1964	Chloramphenicol	M64556	cmlA1	99.68	1260/1260	ABOIYE010000047.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.guided.34, whole genome shotgun sequence	746..2005	Chloramphenicol	M64556	floR	98.19	1214/1215	ABOIYE010000048.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.guided.38, whole genome shotgun sequence	1825..3038	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABOIYE010000026.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.denovo.29, whole genome shotgun sequence	1014..1670	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOIYE010000049.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.guided.40, whole genome shotgun sequence	1055..1711	Ciprofloxacin	AB187515	ARR-2	100	384/453	ABOIYE010000029.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.denovo.36, whole genome shotgun sequence	1..384	Rifampicin	HQ141279	ARR-2	100	385/453	ABOIYE010000047.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.guided.34, whole genome shotgun sequence	41..425	Rifampicin	HQ141279	tet(A)	100	1275/1275	ABOIYE010000026.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.denovo.29, whole genome shotgun sequence	6250..7524	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOIYE010000046.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.guided.33, whole genome shotgun sequence	3634..4908	Doxycycline, Tetracycline	AF534183	dfrA14	100	474/474	ABOIYE010000029.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.denovo.36, whole genome shotgun sequence	3912..4385	Trimethoprim	KF921535	dfrA14	100	474/474	ABOIYE010000047.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.guided.34, whole genome shotgun sequence	3953..4426	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncX1	98.4	374 / 374	ABOIYE010000025.1 Salmonella enterica strain PNUSAS351861 SAMN35440209-rid18232133.denovo.28, whole genome shotgun sequence	7364..7737																																																						avrA	ABOIYE010000002.1	139991..140860	99.195	870	0						
GCA_033035375.1_PDT001759802.1_genomic.fna	Salmonella_enterica	0.523	404.955 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOIYF010000001.1 Salmonella enterica strain PNUSAS351853 SAMN35440206-rid18232123.denovo.01, whole genome shotgun sequence	667175..667612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOIYF010000029.1 Salmonella enterica strain PNUSAS351853 SAMN35440206-rid18232123.guided.21, whole genome shotgun sequence	2242..2679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOIYF010000002.1	508581..509450	99.31	870	0						
GCA_033035395.1_PDT001759801.1_genomic.fna	Salmonella_enterica	0.5213	405.996 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIYG010000001.1 Salmonella enterica strain PNUSAS351854 SAMN35440205-rid18232113.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIYG010000035.1 Salmonella enterica strain PNUSAS351854 SAMN35440205-rid18232113.guided.18, whole genome shotgun sequence	2986..3423	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIYG010000018.1 Salmonella enterica strain PNUSAS351854 SAMN35440205-rid18232113.denovo.20, whole genome shotgun sequence	4567..5209	enterobacteriales	IncFII(S)	100	262 / 262	ABOIYG010000027.1 Salmonella enterica strain PNUSAS351854 SAMN35440205-rid18232113.denovo.30, whole genome shotgun sequence	804..1065																																																avrA	ABOIYG010000002.1	553572..554441	99.54	870	0						
GCA_033035415.1_PDT001759800.1_genomic.fna	Salmonella_enterica	0.5192	253.496 KB	8	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOIYH010000008.1 Salmonella enterica strain PNUSAS351851 SAMN35440210-rid18232103.denovo.08, whole genome shotgun sequence	98691..99128	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOIYH010000005.1 Salmonella enterica strain PNUSAS351851 SAMN35440210-rid18232103.denovo.05, whole genome shotgun sequence	268065..268487	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOIYH010000039.1 Salmonella enterica strain PNUSAS351851 SAMN35440210-rid18232103.guided.35, whole genome shotgun sequence	2852..3274	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOIYH010000001.1	124115..124984	99.195	870	0						
GCA_033035435.1_PDT001759799.1_genomic.fna	Salmonella_enterica	0.5203	241.124 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	5	aac(6')-Iaa,aph(3')-Ia,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,blaTEM-1B,blaTEM-1B,tet(B),tet(B)	0		1	IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOIYI010000001.1 Salmonella enterica strain PNUSAS351862 SAMN35440207-rid18232093.denovo.01, whole genome shotgun sequence	570055..570492	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.88	816/816	ABOIYI010000036.1 Salmonella enterica strain PNUSAS351862 SAMN35440207-rid18232093.denovo.41, whole genome shotgun sequence	6890..7705	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EF015636	aadA1	99.62	792/792	ABOIYI010000036.1 Salmonella enterica strain PNUSAS351862 SAMN35440207-rid18232093.denovo.41, whole genome shotgun sequence	151..942	Spectinomycin, Streptomycin	JX185132	aadA1	99.62	792/792	ABOIYI010000036.1 Salmonella enterica strain PNUSAS351862 SAMN35440207-rid18232093.denovo.41, whole genome shotgun sequence	151..942	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABOIYI010000055.1 Salmonella enterica strain PNUSAS351862 SAMN35440207-rid18232093.guided.33, whole genome shotgun sequence	13113..13550	Amikacin, Tobramycin	NC_003197	aadA1	99.62	792/792	ABOIYI010000059.1 Salmonella enterica strain PNUSAS351862 SAMN35440207-rid18232093.guided.44, whole genome shotgun sequence	4114..4905	Spectinomycin, Streptomycin	JX185132	aadA1	99.62	792/792	ABOIYI010000059.1 Salmonella enterica strain PNUSAS351862 SAMN35440207-rid18232093.guided.44, whole genome shotgun sequence	4114..4905	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	99.88	816/816	ABOIYI010000060.1 Salmonella enterica strain PNUSAS351862 SAMN35440207-rid18232093.guided.52, whole genome shotgun sequence	1834..2649	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EF015636	blaTEM-1B	100	861/861	ABOIYI010000027.1 Salmonella enterica strain PNUSAS351862 SAMN35440207-rid18232093.denovo.27, whole genome shotgun sequence	2799..3659	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOIYI010000058.1 Salmonella enterica strain PNUSAS351862 SAMN35440207-rid18232093.guided.40, whole genome shotgun sequence	2840..3700	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(B)	100	1206/1206	ABOIYI010000034.1 Salmonella enterica strain PNUSAS351862 SAMN35440207-rid18232093.denovo.37, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOIYI010000057.1 Salmonella enterica strain PNUSAS351862 SAMN35440207-rid18232093.guided.39, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncX1	99.47	377 / 377	ABOIYI010000027.1 Salmonella enterica strain PNUSAS351862 SAMN35440207-rid18232093.denovo.27, whole genome shotgun sequence	10997..11373																																																						avrA	ABOIYI010000002.1	93865..94734	99.885	870	0						
GCA_033036215.1_PDT001759732.1_genomic.fna	Salmonella_enterica	0.5151	158.18 KB	10	aroC_470,dnaN_28,hemD_31,hisD_151,purE_22,sucA_29,thrA_30	2197	50:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_470	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_151	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.98	438/438	ABOIZU010000016.1 Salmonella enterica strain PNUSAS351810 SAMN35439902-rid18231523.denovo.17, whole genome shotgun sequence	5166..5603	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.98	438/438	ABOIZU010000073.1 Salmonella enterica strain PNUSAS351810 SAMN35439902-rid18231523.guided.50, whole genome shotgun sequence	1411..1848	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033036295.1_PDT001759694.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOIZZ010000001.1 Salmonella enterica strain PNUSAS351708 SAMN35439795-rid18231233.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOIZZ010000025.1 Salmonella enterica strain PNUSAS351708 SAMN35439795-rid18231233.guided.14, whole genome shotgun sequence	18131..18568	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOIZZ010000012.1 Salmonella enterica strain PNUSAS351708 SAMN35439795-rid18231233.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOIZZ010000016.1 Salmonella enterica strain PNUSAS351708 SAMN35439795-rid18231233.denovo.19, whole genome shotgun sequence	3402..3663																																																avrA	ABOIZZ010000002.1	553636..554505	99.54	870	0						
GCA_033036315.1_PDT001759639.1_genomic.fna	Salmonella_enterica	0.5217	181.737 KB	10	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOJAA010000001.1 Salmonella enterica strain PNUSAS351671 SAMN35439656-rid18230883.denovo.01, whole genome shotgun sequence	155941..156378	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOJAA010000054.1 Salmonella enterica strain PNUSAS351671 SAMN35439656-rid18230883.guided.38, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOJAA010000043.1 Salmonella enterica strain PNUSAS351671 SAMN35439656-rid18230883.denovo.46, whole genome shotgun sequence	239..369																																																						avrA	ABOJAA010000014.1	81527..82396	99.425	870	0						
GCA_033036355.1_PDT001742231.1_genomic.fna	Salmonella_enterica	0.5209	52.125 KB	29	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJAB010000007.1 Salmonella enterica strain PNUSAS342528 SAMN35216824-rid18066093.denovo.007, whole genome shotgun sequence	44035..44472	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJAB010000221.1 Salmonella enterica strain PNUSAS342528 SAMN35216824-rid18066093.guided.137, whole genome shotgun sequence	1845..2282	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABOJAB010000150.1 Salmonella enterica strain PNUSAS342528 SAMN35216824-rid18066093.denovo.153, whole genome shotgun sequence	544..1186	enterobacteriales	IncFII(S)	100	262 / 262	ABOJAB010000154.1 Salmonella enterica strain PNUSAS342528 SAMN35216824-rid18066093.denovo.157, whole genome shotgun sequence	496..757		enterobacteriales	IncX1	98.66	374 / 374	ABOJAB010000116.1 Salmonella enterica strain PNUSAS342528 SAMN35216824-rid18066093.denovo.117, whole genome shotgun sequence	4077..4450																																									avrA	ABOJAB010000004.1	21722..22591	99.54	870	0						
GCA_033036875.1_PDT001953322.1_genomic.fna	Salmonella_enterica	0.5213	327.075 KB	4	aroC_22,dnaN_11,hemD_25,hisD_72,purE_655,sucA_123,thrA_4	3253	9:a:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_655	sucA	100	100	sucA_123	thrA	100	100	thrA_4	9	a	1,7	Salmonella enterica subspecies enterica (subspecies I)	Saarbruecken		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJAD010000001.1 Salmonella enterica strain PNUSAS395325 SAMN37976446-rid19949313.denovo.01, whole genome shotgun sequence	622909..623346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJAD010000027.1 Salmonella enterica strain PNUSAS395325 SAMN37976446-rid19949313.guided.16, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJAD010000002.1	139512..140381	99.425	870	0						
GCA_033036895.1_PDT001953319.1_genomic.fna	Salmonella_enterica	0.5213	480.934 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJAG010000001.1 Salmonella enterica strain PNUSAS395329 SAMN37976448-rid19949163.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJAG010000027.1 Salmonella enterica strain PNUSAS395329 SAMN37976448-rid19949163.guided.17, whole genome shotgun sequence	28560..28997	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJAG010000016.1 Salmonella enterica strain PNUSAS395329 SAMN37976448-rid19949163.denovo.16, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOJAG010000016.1 Salmonella enterica strain PNUSAS395329 SAMN37976448-rid19949163.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABOJAG010000002.1	553076..553945	99.54	870	0						
GCA_033036915.1_PDT001953317.1_genomic.fna	Salmonella_enterica	0.5214	480.935 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJAE010000001.1 Salmonella enterica strain PNUSAS395320 SAMN37976443-rid19949303.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJAE010000029.1 Salmonella enterica strain PNUSAS395320 SAMN37976443-rid19949303.guided.19, whole genome shotgun sequence	15075..15512	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJAE010000015.1 Salmonella enterica strain PNUSAS395320 SAMN37976443-rid19949303.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOJAE010000015.1 Salmonella enterica strain PNUSAS395320 SAMN37976443-rid19949303.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOJAE010000002.1	506265..507134	99.54	870	0						
GCA_033036925.1_PDT001953321.1_genomic.fna	Salmonella_enterica	0.5211	421.395 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJAF010000001.1 Salmonella enterica strain PNUSAS395323 SAMN37976439-rid19949183.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJAF010000027.1 Salmonella enterica strain PNUSAS395323 SAMN37976439-rid19949183.guided.18, whole genome shotgun sequence	14474..14911	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJAF010000013.1 Salmonella enterica strain PNUSAS395323 SAMN37976439-rid19949183.denovo.13, whole genome shotgun sequence	48422..49064	enterobacteriales	IncFII(S)	100	262 / 262	ABOJAF010000013.1 Salmonella enterica strain PNUSAS395323 SAMN37976439-rid19949183.denovo.13, whole genome shotgun sequence	4169..4430																																																avrA	ABOJAF010000002.1	553077..553946	99.54	870	0						
GCA_033036955.1_PDT001953318.1_genomic.fna	Salmonella_enterica	0.5204	386.024 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJAJ010000002.1 Salmonella enterica strain PNUSAS395328 SAMN37976444-rid19949153.denovo.02, whole genome shotgun sequence	149321..149758	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJAJ010000048.1 Salmonella enterica strain PNUSAS395328 SAMN37976444-rid19949153.guided.21, whole genome shotgun sequence	16094..16531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033036975.1_PDT001953316.1_genomic.fna	Salmonella_enterica	0.5223	337.24 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJAH010000001.1 Salmonella enterica strain PNUSAS395324 SAMN37976450-rid19949143.denovo.01, whole genome shotgun sequence	833827..834264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJAH010000032.1 Salmonella enterica strain PNUSAS395324 SAMN37976450-rid19949143.guided.23, whole genome shotgun sequence	1002..1439	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJAH010000033.1 Salmonella enterica strain PNUSAS395324 SAMN37976450-rid19949143.guided.24, whole genome shotgun sequence	1002..1439	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJAH010000002.1	146984..147852	98.851	870	0						
GCA_033036995.1_PDT001953314.1_genomic.fna	Salmonella_enterica	0.5218	392.513 KB	4	aroC_22,dnaN_11,hemD_25,hisD_72,purE_655,sucA_123,thrA_4	3253	9:a:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_655	sucA	100	100	sucA_123	thrA	100	100	thrA_4	9	a	1,7	Salmonella enterica subspecies enterica (subspecies I)	Saarbruecken		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJAK010000001.1 Salmonella enterica strain PNUSAS395326 SAMN37976440-rid19949293.denovo.01, whole genome shotgun sequence	624036..624473	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJAK010000026.1 Salmonella enterica strain PNUSAS395326 SAMN37976440-rid19949293.guided.21, whole genome shotgun sequence	8966..9403	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJAK010000002.1	139506..140375	99.425	870	0						
GCA_033037015.1_PDT001953312.1_genomic.fna	Salmonella_enterica	0.5214	478.497 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJAI010000001.1 Salmonella enterica strain PNUSAS395330 SAMN37976449-rid19949283.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJAI010000030.1 Salmonella enterica strain PNUSAS395330 SAMN37976449-rid19949283.guided.21, whole genome shotgun sequence	8070..8507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJAI010000016.1 Salmonella enterica strain PNUSAS395330 SAMN37976449-rid19949283.denovo.16, whole genome shotgun sequence	49204..49846	enterobacteriales	IncFII(S)	100	262 / 262	ABOJAI010000016.1 Salmonella enterica strain PNUSAS395330 SAMN37976449-rid19949283.denovo.16, whole genome shotgun sequence	4951..5212																																																avrA	ABOJAI010000002.1	553175..554044	99.54	870	0						
GCA_033037035.1_PDT001953311.1_genomic.fna	Salmonella_enterica	0.5221	412.858 KB	5	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJAL010000001.1 Salmonella enterica strain PNUSAS395322 SAMN37976442-rid19949113.denovo.01, whole genome shotgun sequence	136548..136985	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJAL010000029.1 Salmonella enterica strain PNUSAS395322 SAMN37976442-rid19949113.guided.24, whole genome shotgun sequence	712..1149	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJAL010000002.1	510215..511081	99.08	870	0						
GCA_033037115.1_PDT001953320.1_genomic.fna	Salmonella_enterica	0.5146	331.663 KB	6	aroC_33,dnaN_26,hemD_30,hisD_144,purE_464,sucA_87,thrA_134	1848	61:z52:z53	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_144	purE	100	100	purE_464	sucA	100	100	sucA_87	thrA	100	100	thrA_134	61	z52	z53	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:z52:z53		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJAN010000002.1 Salmonella enterica strain PNUSAS395319 SAMN37976447-rid19949173.denovo.02, whole genome shotgun sequence	90160..90597	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJAN010000047.1 Salmonella enterica strain PNUSAS395319 SAMN37976447-rid19949173.guided.34, whole genome shotgun sequence	2624..3061	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJAN010000006.1	154459..155328	96.437	870	0						
GCA_033037775.1_PDT001953375.1_genomic.fna	Salmonella_enterica	0.5212	394.104 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJAX010000001.1 Salmonella enterica strain PNUSAS395344 SAMN37978793-rid19949843.denovo.01, whole genome shotgun sequence	477714..478151	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJAX010000037.1 Salmonella enterica strain PNUSAS395344 SAMN37978793-rid19949843.guided.21, whole genome shotgun sequence	12726..13163	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	92.11	114 / 114	ABOJAX010000021.1 Salmonella enterica strain PNUSAS395344 SAMN37978793-rid19949843.denovo.25, whole genome shotgun sequence	2591..2704	enterobacteriales	Col440I	93.81	113 / 114	ABOJAX010000025.1 Salmonella enterica strain PNUSAS395344 SAMN37978793-rid19949843.denovo.29, whole genome shotgun sequence	2528..2639		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOJAX010000012.1 Salmonella enterica strain PNUSAS395344 SAMN37978793-rid19949843.denovo.12, whole genome shotgun sequence	74864..75005																																									avrA	ABOJAX010000002.1	144854..145723	99.31	870	0						
GCA_033037815.1_PDT001953362.1_genomic.fna	Salmonella_enterica	0.5222	396.728 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJBC010000001.1 Salmonella enterica strain PNUSAS395143 SAMN37977706-rid19949713.denovo.01, whole genome shotgun sequence	683871..684308	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJBC010000022.1 Salmonella enterica strain PNUSAS395143 SAMN37977706-rid19949713.guided.14, whole genome shotgun sequence	38547..38984	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJBC010000007.1	148520..149389	99.77	870	0						
GCA_033037835.1_PDT001953313.1_genomic.fna	Salmonella_enterica	0.5216	392.363 KB	4	aroC_22,dnaN_11,hemD_25,hisD_72,purE_655,sucA_123,thrA_4	3253	9:a:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_72	purE	100	100	purE_655	sucA	100	100	sucA_123	thrA	100	100	thrA_4	9	a	1,7	Salmonella enterica subspecies enterica (subspecies I)	Saarbruecken		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJAY010000001.1 Salmonella enterica strain PNUSAS395321 SAMN37976441-rid19949123.denovo.01, whole genome shotgun sequence	624552..624989	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJAY010000029.1 Salmonella enterica strain PNUSAS395321 SAMN37976441-rid19949123.guided.22, whole genome shotgun sequence	10739..11176	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJAY010000002.1	139524..140393	99.425	870	0						
GCA_033037995.1_PDT001953333.1_genomic.fna	Salmonella_enterica	0.5214	169.472 KB	10	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJBD010000009.1 Salmonella enterica strain PNUSAS395331 SAMN37977141-rid19949423.denovo.09, whole genome shotgun sequence	144691..145128	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJBD010000059.1 Salmonella enterica strain PNUSAS395331 SAMN37977141-rid19949423.guided.38, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033038245.1_PDT001953366.1_genomic.fna	Salmonella_enterica	0.52	724.932 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOJBT010000001.1 Salmonella enterica strain PNUSAS395146 SAMN37977710-rid19949753.denovo.01, whole genome shotgun sequence	503576..504013	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOJBT010000024.1 Salmonella enterica strain PNUSAS395146 SAMN37977710-rid19949753.guided.17, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJBT010000003.1	556185..557053	99.425	870	0						
GCA_033038305.1_PDT001953365.1_genomic.fna	Salmonella_enterica	0.5209	271.912 KB	7	aroC_92,dnaN_125,hemD_78,hisD_128,purE_138,sucA_9,thrA_141	463	3,10:e,h:l,w	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_92	dnaN	100	100	dnaN_125	hemD	100	100	hemD_78	hisD	100	100	hisD_128	purE	100	100	purE_138	sucA	100	100	sucA_9	thrA	100	100	thrA_141	3,10	e,h	l,w	Salmonella enterica subspecies enterica (subspecies I)	Meleagridis		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOJBR010000007.1 Salmonella enterica strain PNUSAS395145 SAMN37977707-rid19949743.denovo.07, whole genome shotgun sequence	117379..117816	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABOJBR010000043.1 Salmonella enterica strain PNUSAS395145 SAMN37977707-rid19949743.guided.25, whole genome shotgun sequence	2238..2675	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABOJBR010000001.1 Salmonella enterica strain PNUSAS395145 SAMN37977707-rid19949743.denovo.01, whole genome shotgun sequence	160102..160524	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABOJBR010000045.1 Salmonella enterica strain PNUSAS395145 SAMN37977707-rid19949743.guided.31, whole genome shotgun sequence	2991..3413	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJBR010000012.1	94332..95201	98.851	870	0						
GCA_033038325.1_PDT001953364.1_genomic.fna	Salmonella_enterica	0.5212	503.995 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncR,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJBU010000001.1 Salmonella enterica strain PNUSAS395144 SAMN37977708-rid19949733.denovo.01, whole genome shotgun sequence	172242..172679	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJBU010000029.1 Salmonella enterica strain PNUSAS395144 SAMN37977708-rid19949733.guided.14, whole genome shotgun sequence	24936..25373	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABOJBU010000019.1 Salmonella enterica strain PNUSAS395144 SAMN37977708-rid19949733.denovo.21, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOJBU010000032.1 Salmonella enterica strain PNUSAS395144 SAMN37977708-rid19949733.guided.25, whole genome shotgun sequence	6161..7066	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOJBU010000019.1 Salmonella enterica strain PNUSAS395144 SAMN37977708-rid19949733.denovo.21, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOJBU010000033.1 Salmonella enterica strain PNUSAS395144 SAMN37977708-rid19949733.guided.29, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOJBU010000019.1 Salmonella enterica strain PNUSAS395144 SAMN37977708-rid19949733.denovo.21, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJBU010000032.1 Salmonella enterica strain PNUSAS395144 SAMN37977708-rid19949733.guided.25, whole genome shotgun sequence	11..850	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOJBU010000019.1 Salmonella enterica strain PNUSAS395144 SAMN37977708-rid19949733.denovo.21, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOJBU010000034.1 Salmonella enterica strain PNUSAS395144 SAMN37977708-rid19949733.guided.30, whole genome shotgun sequence	2706..3980	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOJBU010000019.1 Salmonella enterica strain PNUSAS395144 SAMN37977708-rid19949733.denovo.21, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABOJBU010000034.1 Salmonella enterica strain PNUSAS395144 SAMN37977708-rid19949733.guided.30, whole genome shotgun sequence	1075..1548	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOJBU010000018.1 Salmonella enterica strain PNUSAS395144 SAMN37977708-rid19949733.denovo.20, whole genome shotgun sequence	4434..4684	enterobacteriales	IncX1	99.2	377 / 377	ABOJBU010000013.1 Salmonella enterica strain PNUSAS395144 SAMN37977708-rid19949733.denovo.13, whole genome shotgun sequence	8926..9302																																																avrA	ABOJBU010000002.1	553473..554342	99.77	870	0						
GCA_033038885.1_PDT001953363.1_genomic.fna	Salmonella_enterica	0.522	728.817 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJCR010000001.1 Salmonella enterica strain PNUSAS395142 SAMN37977709-rid19949723.denovo.01, whole genome shotgun sequence	640510..640947	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJCR010000023.1 Salmonella enterica strain PNUSAS395142 SAMN37977709-rid19949723.guided.16, whole genome shotgun sequence	12036..12473	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJCR010000012.1 Salmonella enterica strain PNUSAS395142 SAMN37977709-rid19949723.denovo.12, whole genome shotgun sequence	67508..67649																																																						avrA	ABOJCR010000003.1	553821..554690	99.77	870	0						
GCA_033039095.1_PDT001953502.1_genomic.fna	Salmonella_enterica	0.5221	217.708 KB	8	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOJDB010000001.1 Salmonella enterica strain PNUSAS395504 SAMN37982022-rid19950613.denovo.01, whole genome shotgun sequence	293540..293977	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJDB010000047.1 Salmonella enterica strain PNUSAS395504 SAMN37982022-rid19950613.guided.30, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOJDB010000032.1 Salmonella enterica strain PNUSAS395504 SAMN37982022-rid19950613.denovo.35, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABOJDB010000033.1 Salmonella enterica strain PNUSAS395504 SAMN37982022-rid19950613.denovo.36, whole genome shotgun sequence	2528..2639																																																avrA	ABOJDB010000008.1	39695..40563	99.425	870	0						
GCA_033039115.1_PDT001953501.1_genomic.fna	Salmonella_enterica	0.5217	219.391 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJDC010000001.1 Salmonella enterica strain PNUSAS395507 SAMN37982025-rid19951123.denovo.01, whole genome shotgun sequence	381672..382109	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJDC010000042.1 Salmonella enterica strain PNUSAS395507 SAMN37982025-rid19951123.guided.34, whole genome shotgun sequence	6510..6947	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJDC010000002.1	207907..208775	99.77	870	0						
GCA_033039135.1_PDT001953499.1_genomic.fna	Salmonella_enterica	0.5208	185.371 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJDG010000001.1 Salmonella enterica strain PNUSAS395513 SAMN37982027-rid19951113.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJDG010000054.1 Salmonella enterica strain PNUSAS395513 SAMN37982027-rid19951113.guided.24, whole genome shotgun sequence	39521..39958	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJDG010000005.1	174491..175359	99.77	870	0						
GCA_033039155.1_PDT001953500.1_genomic.fna	Salmonella_enterica	0.5207	337.207 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJDE010000001.1 Salmonella enterica strain PNUSAS395506 SAMN37982024-rid19950603.denovo.01, whole genome shotgun sequence	424114..424551	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJDE010000041.1 Salmonella enterica strain PNUSAS395506 SAMN37982024-rid19950603.guided.19, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJDE010000021.1 Salmonella enterica strain PNUSAS395506 SAMN37982024-rid19950603.denovo.22, whole genome shotgun sequence	20230..20371																																																						avrA	ABOJDE010000002.1	144742..145611	99.31	870	0						
GCA_033039175.1_PDT001953505.1_genomic.fna	Salmonella_enterica	0.5211	399.222 KB	4	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOJDD010000001.1 Salmonella enterica strain PNUSAS395505 SAMN37982023-rid19950623.denovo.01, whole genome shotgun sequence	540044..540481	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOJDD010000032.1 Salmonella enterica strain PNUSAS395505 SAMN37982023-rid19950623.guided.24, whole genome shotgun sequence	22513..22950	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJDD010000002.1	496942..497810	99.655	869	0						
GCA_033039195.1_PDT001953498.1_genomic.fna	Salmonella_enterica	0.5212	296.234 KB	6	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJDI010000001.1 Salmonella enterica strain PNUSAS395510 SAMN37982017-rid19951103.denovo.01, whole genome shotgun sequence	494533..494970	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJDI010000042.1 Salmonella enterica strain PNUSAS395510 SAMN37982017-rid19951103.guided.30, whole genome shotgun sequence	4206..4643	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJDI010000002.1	144854..145723	99.31	870	0						
GCA_033039215.1_PDT001953492.1_genomic.fna	Salmonella_enterica	0.52	309.604 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJDH010000001.1 Salmonella enterica strain PNUSAS395511 SAMN37982019-rid19950573.denovo.01, whole genome shotgun sequence	167933..168370	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJDH010000041.1 Salmonella enterica strain PNUSAS395511 SAMN37982019-rid19950573.guided.28, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOJDH010000015.1 Salmonella enterica strain PNUSAS395511 SAMN37982019-rid19950573.denovo.15, whole genome shotgun sequence	66395..67600	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJDH010000039.1 Salmonella enterica strain PNUSAS395511 SAMN37982019-rid19950573.guided.22, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJDH010000015.1 Salmonella enterica strain PNUSAS395511 SAMN37982019-rid19950573.denovo.15, whole genome shotgun sequence	73986..74127	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJDH010000039.1 Salmonella enterica strain PNUSAS395511 SAMN37982019-rid19950573.guided.22, whole genome shotgun sequence	3169..3310																																																avrA	ABOJDH010000002.1	144854..145723	99.31	870	0						
GCA_033039235.1_PDT001953497.1_genomic.fna	Salmonella_enterica	0.5217	207.446 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJDF010000001.1 Salmonella enterica strain PNUSAS395516 SAMN37982013-rid19950593.denovo.01, whole genome shotgun sequence	145424..145861	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJDF010000042.1 Salmonella enterica strain PNUSAS395516 SAMN37982013-rid19950593.guided.33, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJDF010000002.1	207907..208775	99.77	870	0						
GCA_033039255.1_PDT001953487.1_genomic.fna	Salmonella_enterica	0.5224	45.988 KB	35	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	ColpVC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJDL010000063.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314629 SAMN37982370-rid19950553.denovo.063, whole genome shotgun sequence	12500..12937	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJDL010000197.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314629 SAMN37982370-rid19950553.guided.073, whole genome shotgun sequence	15468..15905	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABOJDL010000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314629 SAMN37982370-rid19950553.denovo.011, whole genome shotgun sequence	39886..40701	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOJDL010000199.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314629 SAMN37982370-rid19950553.guided.113, whole genome shotgun sequence	631..1446	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOJDL010000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314629 SAMN37982370-rid19950553.denovo.011, whole genome shotgun sequence	42878..44077	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJDL010000199.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314629 SAMN37982370-rid19950553.guided.113, whole genome shotgun sequence	3623..4822	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	ColpVC	98.96	193 / 193	ABOJDL010000161.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314629 SAMN37982370-rid19950553.denovo.165, whole genome shotgun sequence	805..997																																																						avrA	ABOJDL010000015.1	61666..62535	99.885	870	0						
GCA_033039275.1_PDT001953486.1_genomic.fna	Salmonella_enterica	0.5239	53.459 KB	29	aroC_341,dnaN_11,hemD_8,hisD_404,purE_61,sucA_504,thrA_341	2398	-:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_341	dnaN	100	100	dnaN_11	hemD	100	100	hemD_8	hisD	100	100	hisD_404	purE	100	100	purE_61	sucA	100	100	sucA_504	thrA	100	100	thrA_341	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOJDK010000018.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS22314627 SAMN37982368-rid19951033.denovo.018, whole genome shotgun sequence	12438..12875	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOJDK010000186.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS22314627 SAMN37982368-rid19951033.guided.083, whole genome shotgun sequence	15600..16037	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJDK010000010.1	81405..82274	98.966	870	0						
GCA_033039295.1_PDT001953484.1_genomic.fna	Salmonella_enterica	0.5217	49.692 KB	30	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJDN010000085.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314631 SAMN37982366-rid19951023.denovo.086, whole genome shotgun sequence	12500..12937	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJDN010000204.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314631 SAMN37982366-rid19951023.guided.085, whole genome shotgun sequence	6136..6573	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	ABOJDN010000130.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314631 SAMN37982366-rid19951023.denovo.133, whole genome shotgun sequence	1973..2654	enterobacteriales	IncFII	96.56	262 / 261	ABOJDN010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314631 SAMN37982366-rid19951023.denovo.046, whole genome shotgun sequence	34133..34394		enterobacteriales	IncX1	100	373 / 373	ABOJDN010000101.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314631 SAMN37982366-rid19951023.denovo.104, whole genome shotgun sequence	2242..2614																																									avrA	ABOJDN010000036.1	39484..40353	99.655	870	0						
GCA_033039315.1_PDT001953481.1_genomic.fna	Salmonella_enterica	0.5215	41.626 KB	37	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJDM010000013.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314466 SAMN37982194-rid19951003.denovo.013, whole genome shotgun sequence	12477..12914	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJDM010000088.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314466 SAMN37982194-rid19951003.denovo.089, whole genome shotgun sequence	2374..3210	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJDM010000088.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314466 SAMN37982194-rid19951003.denovo.089, whole genome shotgun sequence	3210..4013	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOJDM010000249.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314466 SAMN37982194-rid19951003.guided.094, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJDM010000252.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314466 SAMN37982194-rid19951003.guided.198, whole genome shotgun sequence	832..1668	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJDM010000252.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314466 SAMN37982194-rid19951003.guided.198, whole genome shotgun sequence	29..832	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOJDM010000171.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314466 SAMN37982194-rid19951003.denovo.174, whole genome shotgun sequence	1741..2946	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJDM010000251.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314466 SAMN37982194-rid19951003.guided.177, whole genome shotgun sequence	1574..2779	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOJDM010000159.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314466 SAMN37982194-rid19951003.denovo.162, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOJDM010000088.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314466 SAMN37982194-rid19951003.denovo.089, whole genome shotgun sequence	1490..1751		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOJDM010000172.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314466 SAMN37982194-rid19951003.denovo.175, whole genome shotgun sequence	110..251		enterobacteriales	IncX1	100	373 / 373	ABOJDM010000179.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314466 SAMN37982194-rid19951003.denovo.183, whole genome shotgun sequence	1156..1528																																		avrA	ABOJDM010000037.1	39484..40353	99.655	870	0						
GCA_033039355.1_PDT001953480.1_genomic.fna	Salmonella_enterica	0.5214	50.1 KB	30	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJDQ010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314609 SAMN37982189-rid19950523.denovo.073, whole genome shotgun sequence	10446..10883	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJDQ010000218.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314609 SAMN37982189-rid19950523.guided.071, whole genome shotgun sequence	14098..14535	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	100	373 / 373	ABOJDQ010000150.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314609 SAMN37982189-rid19950523.denovo.153, whole genome shotgun sequence	2153..2525																																																						avrA	ABOJDQ010000040.1	39475..40344	99.655	870	0						
GCA_033039375.1_PDT001953477.1_genomic.fna	Salmonella_enterica	0.522	46.718 KB	34	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJDP010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.denovo.060, whole genome shotgun sequence	14067..14504	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJDP010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.denovo.068, whole genome shotgun sequence	22844..23635	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJDP010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.denovo.068, whole genome shotgun sequence	22844..23635	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOJDP010000151.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.denovo.155, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOJDP010000151.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.denovo.155, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOJDP010000193.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.denovo.201, whole genome shotgun sequence	93..908	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	X62115	aac(6')-Iaa	97.49	438/438	ABOJDP010000214.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.guided.085, whole genome shotgun sequence	7391..7828	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJDP010000218.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.guided.157, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJDP010000218.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.guided.157, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOJDP010000219.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.guided.161, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOJDP010000219.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.guided.161, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOJDP010000220.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.guided.198, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	X62115	blaCTX-M-65	100	858/876	ABOJDP010000199.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.denovo.208, whole genome shotgun sequence	19..876	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	858/876	ABOJDP010000221.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.guided.203, whole genome shotgun sequence	40..897	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOJDP010000147.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.denovo.151, whole genome shotgun sequence	3299..4512	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOJDP010000217.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.guided.156, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOJDP010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.denovo.068, whole genome shotgun sequence	21500..22339	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJDP010000218.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.guided.157, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOJDP010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.denovo.068, whole genome shotgun sequence	7784..8983	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJDP010000216.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.guided.107, whole genome shotgun sequence	6202..7401	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOJDP010000146.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314607 SAMN37982187-rid19950513.denovo.150, whole genome shotgun sequence	2163..2722																																																						avrA	ABOJDP010000016.1	61404..62273	99.655	870	0						
GCA_033039395.1_PDT001953474.1_genomic.fna	Salmonella_enterica	0.5216	201.034 KB	9	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOJDO010000001.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310394 SAMN37982108-rid19950963.denovo.01, whole genome shotgun sequence	249910..250347	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOJDO010000054.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310394 SAMN37982108-rid19950963.guided.42, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOJDO010000041.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310394 SAMN37982108-rid19950963.denovo.44, whole genome shotgun sequence	557..687	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOJDO010000042.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS32310394 SAMN37982108-rid19950963.denovo.45, whole genome shotgun sequence	186..316																																																avrA	ABOJDO010000010.1	62030..62898	99.655	869	0						
GCA_033039415.1_PDT001953473.1_genomic.fna	Salmonella_enterica	0.5228	74.1 KB	19	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJDR010000013.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310397 SAMN37982111-rid19950953.denovo.013, whole genome shotgun sequence	56307..56744	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJDR010000123.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310397 SAMN37982111-rid19950953.guided.067, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOJDR010000087.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310397 SAMN37982111-rid19950953.denovo.090, whole genome shotgun sequence	6835..7477	enterobacteriales	IncFII(S)	100	262 / 262	ABOJDR010000059.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS32310397 SAMN37982111-rid19950953.denovo.060, whole genome shotgun sequence	12629..12890																																																avrA	ABOJDR010000012.1	107905..108773	100	869	0						
GCA_033039435.1_PDT001953471.1_genomic.fna	Salmonella_enterica	0.5199	135.038 KB	12	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJDT010000018.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310399 SAMN37982105-rid19950943.denovo.18, whole genome shotgun sequence	12398..12835	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJDT010000095.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310399 SAMN37982105-rid19950943.guided.48, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABOJDT010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310399 SAMN37982105-rid19950943.denovo.54, whole genome shotgun sequence	4356..4615	enterobacteriales	IncX1	100	373 / 373	ABOJDT010000071.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310399 SAMN37982105-rid19950943.denovo.74, whole genome shotgun sequence	2153..2525																																																avrA	ABOJDT010000033.1	39484..40353	99.655	870	0						
GCA_033039455.1_PDT001953468.1_genomic.fna	Salmonella_enterica	0.5197	489.647 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJDX010000001.1 Salmonella enterica strain PNUSAS395470 SAMN37981097-rid19950913.denovo.01, whole genome shotgun sequence	733719..734156	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJDX010000023.1 Salmonella enterica strain PNUSAS395470 SAMN37981097-rid19950913.guided.16, whole genome shotgun sequence	8261..8698	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABOJDX010000024.1 Salmonella enterica strain PNUSAS395470 SAMN37981097-rid19950913.guided.17, whole genome shotgun sequence	8261..8698	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																							enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJDX010000011.1 Salmonella enterica strain PNUSAS395470 SAMN37981097-rid19950913.denovo.11, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	ABOJDX010000011.1 Salmonella enterica strain PNUSAS395470 SAMN37981097-rid19950913.denovo.11, whole genome shotgun sequence	51846..52107		enterobacteriales	IncX1	98.67	377 / 377	ABOJDX010000012.1 Salmonella enterica strain PNUSAS395470 SAMN37981097-rid19950913.denovo.12, whole genome shotgun sequence	6390..6766																																									avrA	ABOJDX010000002.1	553108..553977	99.54	870	0						
GCA_033039495.1_PDT001953461.1_genomic.fna	Salmonella_enterica	0.5211	161.302 KB	10	aroC_188,dnaN_112,hemD_121,hisD_14,purE_176,sucA_183,thrA_1	590	3,10:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI2(Delta)	aroC	100	100	aroC_188	dnaN	100	100	dnaN_112	hemD	100	100	hemD_121	hisD	100	100	hisD_14	purE	100	100	purE_176	sucA	100	100	sucA_183	thrA	100	100	thrA_1	3,10	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Amsterdam		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJDV010000001.1 Salmonella enterica subsp. enterica serovar Amsterdam strain FSIS32310396 SAMN37982110-rid19950873.denovo.01, whole genome shotgun sequence	154375..154812	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJDV010000065.1 Salmonella enterica subsp. enterica serovar Amsterdam strain FSIS32310396 SAMN37982110-rid19950873.guided.32, whole genome shotgun sequence	16433..16870	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI2(Delta)	100	316 / 316	ABOJDV010000051.1 Salmonella enterica subsp. enterica serovar Amsterdam strain FSIS32310396 SAMN37982110-rid19950873.denovo.54, whole genome shotgun sequence	3061..3376																																																						avrA	ABOJDV010000013.1	39484..40353	98.851	870	0						
GCA_033039515.1_PDT001953465.1_genomic.fna	Salmonella_enterica	0.5196	92.712 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncI1-I(Alpha)	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJDW010000021.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310393 SAMN37982107-rid19950473.denovo.021, whole genome shotgun sequence	37900..38337	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJDW010000077.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310393 SAMN37982107-rid19950473.denovo.080, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOJDW010000077.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310393 SAMN37982107-rid19950473.denovo.080, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOJDW010000120.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310393 SAMN37982107-rid19950473.guided.037, whole genome shotgun sequence	8046..8483	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJDW010000123.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310393 SAMN37982107-rid19950473.guided.100, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOJDW010000123.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310393 SAMN37982107-rid19950473.guided.100, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOJDW010000095.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310393 SAMN37982107-rid19950473.denovo.098, whole genome shotgun sequence	1155..1836	enterobacteriales	IncFII	96.95	262 / 261	ABOJDW010000077.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310393 SAMN37982107-rid19950473.denovo.080, whole genome shotgun sequence	5800..6061		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOJDW010000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310393 SAMN37982107-rid19950473.denovo.047, whole genome shotgun sequence	29881..30022																																									avrA	ABOJDW010000037.1	39499..40368	99.655	870	0						
GCA_033039535.1_PDT001953460.1_genomic.fna	Salmonella_enterica	0.5218	187.765 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJDU010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310398 SAMN37982104-rid19950863.denovo.01, whole genome shotgun sequence	44035..44472	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJDU010000058.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310398 SAMN37982104-rid19950863.guided.36, whole genome shotgun sequence	13922..14359	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJDU010000047.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310398 SAMN37982104-rid19950863.denovo.50, whole genome shotgun sequence	2264..2906	enterobacteriales	IncFII(S)	100	262 / 262	ABOJDU010000044.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310398 SAMN37982104-rid19950863.denovo.47, whole genome shotgun sequence	3382..3643																																																avrA	ABOJDU010000005.1	149439..150308	99.54	870	0						
GCA_033039555.1_PDT001953458.1_genomic.fna	Salmonella_enterica	0.5225	155.571 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJDZ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310395 SAMN37982109-rid19950453.denovo.01, whole genome shotgun sequence	382125..382562	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJDZ010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310395 SAMN37982109-rid19950453.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJDZ010000009.1	125820..126689	99.655	870	0						
GCA_033039575.1_PDT001953459.1_genomic.fna	Salmonella_enterica	0.5204	755.413 KB	2	aroC_60,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	1547	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_60	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOJDY010000001.1 Salmonella enterica strain PNUSAS395472 SAMN37981100-rid19950853.denovo.01, whole genome shotgun sequence	643288..643725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOJDY010000016.1 Salmonella enterica strain PNUSAS395472 SAMN37981100-rid19950853.guided.06, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJDY010000003.1	174914..175783	99.54	870	0						
GCA_033039595.1_PDT001953456.1_genomic.fna	Salmonella_enterica	0.5223	388.092 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOJEB010000001.1 Salmonella enterica strain PNUSAS395468 SAMN37981094-rid19950843.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJEB010000032.1 Salmonella enterica strain PNUSAS395468 SAMN37981094-rid19950843.guided.19, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJEB010000007.1	174279..175147	99.425	870	0						
GCA_033039615.1_PDT001953457.1_genomic.fna	Salmonella_enterica	0.5219	642.586 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJEA010000001.1 Salmonella enterica strain PNUSAS395479 SAMN37981109-rid19950443.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJEA010000023.1 Salmonella enterica strain PNUSAS395479 SAMN37981109-rid19950443.guided.09, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJEA010000003.1	129887..130756	98.966	870	0						
GCA_033039635.1_PDT001953455.1_genomic.fna	Salmonella_enterica	0.5214	761.836 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	8	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJEE010000001.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.denovo.01, whole genome shotgun sequence	638992..639429	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOJEE010000016.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.denovo.19, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOJEE010000027.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.guided.08, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOJEE010000030.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.guided.22, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOJEE010000016.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.denovo.19, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOJEE010000030.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.guided.22, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOJEE010000018.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.denovo.21, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOJEE010000032.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.guided.26, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	qnrA1	100	657/657	ABOJEE010000016.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.denovo.19, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOJEE010000030.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.guided.22, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOJEE010000016.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.denovo.19, whole genome shotgun sequence	5021..5860	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJEE010000033.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.guided.27, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOJEE010000016.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.denovo.19, whole genome shotgun sequence	8536..9810	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOJEE010000031.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.guided.24, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOJEE010000016.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.denovo.19, whole genome shotgun sequence	6905..7378	Trimethoprim	X00926	dfrA1	100	474/474	ABOJEE010000031.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.guided.24, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOJEE010000014.1 Salmonella enterica strain PNUSAS395485 SAMN37981115-rid19950433.denovo.17, whole genome shotgun sequence	4434..4684																																																						avrA	ABOJEE010000002.1	586519..587388	99.77	870	0						
GCA_033039655.1_PDT001953452.1_genomic.fna	Salmonella_enterica	0.5202	695.479 KB	2	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJEC010000001.1 Salmonella enterica strain PNUSAS395474 SAMN37981104-rid19950413.denovo.01, whole genome shotgun sequence	643310..643747	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJEC010000021.1 Salmonella enterica strain PNUSAS395474 SAMN37981104-rid19950413.guided.15, whole genome shotgun sequence	3218..3655	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033039675.1_PDT001953453.1_genomic.fna	Salmonella_enterica	0.5224	390.651 KB	3	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJED010000001.1 Salmonella enterica strain PNUSAS395483 SAMN37981113-rid19950423.denovo.01, whole genome shotgun sequence	1374582..1375019	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJED010000018.1 Salmonella enterica strain PNUSAS395483 SAMN37981113-rid19950423.denovo.21, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOJED010000018.1 Salmonella enterica strain PNUSAS395483 SAMN37981113-rid19950423.denovo.21, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJED010000018.1 Salmonella enterica strain PNUSAS395483 SAMN37981113-rid19950423.denovo.21, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJED010000018.1 Salmonella enterica strain PNUSAS395483 SAMN37981113-rid19950423.denovo.21, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJED010000018.1 Salmonella enterica strain PNUSAS395483 SAMN37981113-rid19950423.denovo.21, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOJED010000034.1 Salmonella enterica strain PNUSAS395483 SAMN37981113-rid19950423.guided.19, whole genome shotgun sequence	4734..5171	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJED010000036.1 Salmonella enterica strain PNUSAS395483 SAMN37981113-rid19950423.guided.24, whole genome shotgun sequence	1215..2051	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOJED010000036.1 Salmonella enterica strain PNUSAS395483 SAMN37981113-rid19950423.guided.24, whole genome shotgun sequence	413..1215	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJED010000036.1 Salmonella enterica strain PNUSAS395483 SAMN37981113-rid19950423.guided.24, whole genome shotgun sequence	412..1215	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJED010000036.1 Salmonella enterica strain PNUSAS395483 SAMN37981113-rid19950423.guided.24, whole genome shotgun sequence	412..1215	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJED010000036.1 Salmonella enterica strain PNUSAS395483 SAMN37981113-rid19950423.guided.24, whole genome shotgun sequence	412..1215	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOJED010000019.1 Salmonella enterica strain PNUSAS395483 SAMN37981113-rid19950423.denovo.23, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJED010000035.1 Salmonella enterica strain PNUSAS395483 SAMN37981113-rid19950423.guided.22, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABOJED010000023.1 Salmonella enterica strain PNUSAS395483 SAMN37981113-rid19950423.denovo.28, whole genome shotgun sequence	805..997																																																						avrA	ABOJED010000007.1	140341..141210	99.655	870	0						
GCA_033039695.1_PDT001953449.1_genomic.fna	Salmonella_enterica	0.5209	453.384 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJEF010000001.1 Salmonella enterica strain PNUSAS395467 SAMN37981093-rid19950813.denovo.01, whole genome shotgun sequence	477437..477874	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJEF010000026.1 Salmonella enterica strain PNUSAS395467 SAMN37981093-rid19950813.guided.20, whole genome shotgun sequence	5400..5837	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJEF010000011.1	105903..106771	99.195	870	0						
GCA_033039715.1_PDT001953448.1_genomic.fna	Salmonella_enterica	0.5211	359.939 KB	3	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJEG010000001.1 Salmonella enterica strain PNUSAS395471 SAMN37981098-rid19950393.denovo.01, whole genome shotgun sequence	1291404..1291841	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJEG010000027.1 Salmonella enterica strain PNUSAS395471 SAMN37981098-rid19950393.guided.14, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_033039735.1_PDT001953443.1_genomic.fna	Salmonella_enterica	0.522	380.165 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOJEK010000001.1 Salmonella enterica strain PNUSAS395481 SAMN37981111-rid19950363.denovo.01, whole genome shotgun sequence	405412..405849	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJEK010000037.1 Salmonella enterica strain PNUSAS395481 SAMN37981111-rid19950363.guided.19, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOJEK010000023.1 Salmonella enterica strain PNUSAS395481 SAMN37981111-rid19950363.denovo.26, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABOJEK010000024.1 Salmonella enterica strain PNUSAS395481 SAMN37981111-rid19950363.denovo.27, whole genome shotgun sequence	2528..2639																																																avrA	ABOJEK010000009.1	94166..95034	99.425	870	0						
GCA_033039755.1_PDT001953447.1_genomic.fna	Salmonella_enterica	0.5215	394.632 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOJEH010000001.1 Salmonella enterica strain PNUSAS395466 SAMN37981092-rid19950383.denovo.01, whole genome shotgun sequence	596331..596768	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOJEH010000042.1 Salmonella enterica strain PNUSAS395466 SAMN37981092-rid19950383.guided.28, whole genome shotgun sequence	2152..2589	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJEH010000003.1	394949..395817	99.425	870	0						
GCA_033039775.1_PDT001953444.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJEJ010000001.1 Salmonella enterica strain PNUSAS395480 SAMN37981110-rid19950793.denovo.01, whole genome shotgun sequence	774351..774788	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJEJ010000023.1 Salmonella enterica strain PNUSAS395480 SAMN37981110-rid19950793.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJEJ010000012.1 Salmonella enterica strain PNUSAS395480 SAMN37981110-rid19950793.denovo.12, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	ABOJEJ010000016.1 Salmonella enterica strain PNUSAS395480 SAMN37981110-rid19950793.denovo.19, whole genome shotgun sequence	3402..3663																																																avrA	ABOJEJ010000002.1	550606..551475	99.54	870	0						
GCA_033039795.1_PDT001953442.1_genomic.fna	Salmonella_enterica	0.5226	761.796 KB	3	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJEM010000001.1 Salmonella enterica strain PNUSAS395477 SAMN37981107-rid19950353.denovo.01, whole genome shotgun sequence	473750..474187	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJEM010000019.1 Salmonella enterica strain PNUSAS395477 SAMN37981107-rid19950353.guided.14, whole genome shotgun sequence	5736..6173	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJEM010000005.1	151330..152199	99.77	870	0						
GCA_033039815.1_PDT001953440.1_genomic.fna	Salmonella_enterica	0.5207	519.931 KB	4	aroC_15,dnaN_126,hemD_101,hisD_88,purE_8,sucA_19,thrA_18	446	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(p96A)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_126	hemD	100	100	hemD_101	hisD	100	100	hisD_88	purE	100	100	purE_8	sucA	100	100	sucA_19	thrA	100	100	thrA_18	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOJEL010000001.1 Salmonella enterica strain PNUSAS395469 SAMN37981095-rid19950343.denovo.01, whole genome shotgun sequence	631476..631913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOJEL010000025.1 Salmonella enterica strain PNUSAS395469 SAMN37981095-rid19950343.guided.11, whole genome shotgun sequence	11441..11878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(p96A)	99.44	534 / 534	ABOJEL010000013.1 Salmonella enterica strain PNUSAS395469 SAMN37981095-rid19950343.denovo.16, whole genome shotgun sequence	15582..16115																																																						avrA	ABOJEL010000009.1	140140..141009	99.655	870	0						
GCA_033039855.1_PDT001953438.1_genomic.fna	Salmonella_enterica	0.5203	276.15 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJEN010000001.1 Salmonella enterica strain PNUSAS395473 SAMN37981102-rid19950333.denovo.01, whole genome shotgun sequence	591136..591573	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOJEN010000033.1 Salmonella enterica strain PNUSAS395473 SAMN37981102-rid19950333.denovo.38, whole genome shotgun sequence	555..1370	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABOJEN010000034.1 Salmonella enterica strain PNUSAS395473 SAMN37981102-rid19950333.denovo.40, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJEN010000034.1 Salmonella enterica strain PNUSAS395473 SAMN37981102-rid19950333.denovo.40, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOJEN010000047.1 Salmonella enterica strain PNUSAS395473 SAMN37981102-rid19950333.guided.25, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOJEN010000050.1 Salmonella enterica strain PNUSAS395473 SAMN37981102-rid19950333.guided.37, whole genome shotgun sequence	1..816	Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	EU722351	aph(6)-Id	100	837/837	ABOJEN010000051.1 Salmonella enterica strain PNUSAS395473 SAMN37981102-rid19950333.guided.39, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJEN010000051.1 Salmonella enterica strain PNUSAS395473 SAMN37981102-rid19950333.guided.39, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOJEN010000036.1 Salmonella enterica strain PNUSAS395473 SAMN37981102-rid19950333.denovo.43, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOJEN010000052.1 Salmonella enterica strain PNUSAS395473 SAMN37981102-rid19950333.guided.42, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOJEN010000034.1 Salmonella enterica strain PNUSAS395473 SAMN37981102-rid19950333.denovo.40, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOJEN010000051.1 Salmonella enterica strain PNUSAS395473 SAMN37981102-rid19950333.guided.39, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOJEN010000028.1 Salmonella enterica strain PNUSAS395473 SAMN37981102-rid19950333.denovo.32, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJEN010000049.1 Salmonella enterica strain PNUSAS395473 SAMN37981102-rid19950333.guided.31, whole genome shotgun sequence	7025..8230	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncX1	98.66	374 / 374	ABOJEN010000025.1 Salmonella enterica strain PNUSAS395473 SAMN37981102-rid19950333.denovo.27, whole genome shotgun sequence	6956..7329																																																						avrA	ABOJEN010000002.1	540735..541604	99.885	870	0						
GCA_033039875.1_PDT001953437.1_genomic.fna	Salmonella_enterica	0.5177	366.364 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJEO010000001.1 Salmonella enterica strain PNUSAS395484 SAMN37981114-rid19950323.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJEO010000037.1 Salmonella enterica strain PNUSAS395484 SAMN37981114-rid19950323.guided.28, whole genome shotgun sequence	1521..1958	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOJEO010000004.1 Salmonella enterica strain PNUSAS395484 SAMN37981114-rid19950323.denovo.04, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOJEO010000036.1 Salmonella enterica strain PNUSAS395484 SAMN37981114-rid19950323.guided.27, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOJEO010000016.1 Salmonella enterica strain PNUSAS395484 SAMN37981114-rid19950323.denovo.16, whole genome shotgun sequence	72198..72339																																																						avrA	ABOJEO010000002.1	150594..151463	99.195	870	0						
GCA_033039895.1_PDT001953434.1_genomic.fna	Salmonella_enterica	0.5216	69.182 KB	23	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.S83F	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJEQ010000013.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.denovo.013, whole genome shotgun sequence	12388..12825	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJEQ010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.denovo.049, whole genome shotgun sequence	31733..32569	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJEQ010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.denovo.049, whole genome shotgun sequence	30930..31733	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOJEQ010000107.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.denovo.113, whole genome shotgun sequence	134..949	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	V00359	aph(6)-Id	100	837/837	ABOJEQ010000117.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.guided.058, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJEQ010000117.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.guided.058, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOJEQ010000120.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.guided.088, whole genome shotgun sequence	8084..8521	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOJEQ010000122.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.guided.112, whole genome shotgun sequence	129..944	Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside	V00359	blaCMY-2	100	1146/1146	ABOJEQ010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.denovo.049, whole genome shotgun sequence	568..1713	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOJEQ010000117.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.guided.058, whole genome shotgun sequence	33398..34543	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOJEQ010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.denovo.049, whole genome shotgun sequence	35705..36918	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOJEQ010000121.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.guided.101, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOJEQ010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.denovo.049, whole genome shotgun sequence	30054..30869	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOJEQ010000117.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.guided.058, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOJEQ010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.denovo.049, whole genome shotgun sequence	33830..35104	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOJEQ010000117.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.guided.058, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABOJEQ010000063.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.denovo.064, whole genome shotgun sequence	17489..17905	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOJEQ010000040.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.denovo.040, whole genome shotgun sequence	30011..30270		enterobacteriales	IncX1	98.66	374 / 374	ABOJEQ010000069.1 Salmonella enterica subsp. enterica serovar Dublin strain FSIS12325836 SAMN37981070-rid19950753.denovo.070, whole genome shotgun sequence	8312..8685																																									avrA	ABOJEQ010000005.1	148276..149144	99.54	870	0						
GCA_033039915.1_PDT001953433.1_genomic.fna	Salmonella_enterica	0.5235	132.482 KB	10	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJEP010000001.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325832 SAMN37981067-rid19950303.denovo.01, whole genome shotgun sequence	487887..488324	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJEP010000076.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325832 SAMN37981067-rid19950303.guided.53, whole genome shotgun sequence	4085..4522	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033039935.1_PDT001953431.1_genomic.fna	Salmonella_enterica	0.522	67.168 KB	25	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	-:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	-	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJES010000009.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12325955 SAMN37981099-rid19950743.denovo.009, whole genome shotgun sequence	17240..17677	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJES010000139.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12325955 SAMN37981099-rid19950743.guided.070, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOJES010000004.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12325955 SAMN37981099-rid19950743.denovo.004, whole genome shotgun sequence	17991..18413	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOJES010000140.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12325955 SAMN37981099-rid19950743.guided.074, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJES010000011.1	95882..96751	99.195	870	0						
GCA_033039955.1_PDT001953430.1_genomic.fna	Salmonella_enterica	0.5222	94.559 KB	17	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOJEU010000003.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325956 SAMN37981101-rid19950283.denovo.003, whole genome shotgun sequence	206466..206903	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJEU010000099.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325956 SAMN37981101-rid19950283.guided.027, whole genome shotgun sequence	42405..42842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABOJEU010000079.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325956 SAMN37981101-rid19950283.denovo.082, whole genome shotgun sequence	4738..4868	enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOJEU010000081.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325956 SAMN37981101-rid19950283.denovo.084, whole genome shotgun sequence	2209..2339		enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOJEU010000084.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12325956 SAMN37981101-rid19950283.denovo.087, whole genome shotgun sequence	557..687																																									avrA	ABOJEU010000020.1	84022..84891	99.54	870	0						
GCA_033039975.1_PDT001953432.1_genomic.fna	Salmonella_enterica	0.5203	49.952 KB	34	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	5	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncI2,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJER010000007.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325957 SAMN37981103-rid19950293.denovo.007, whole genome shotgun sequence	75551..75988	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJER010000113.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325957 SAMN37981103-rid19950293.denovo.116, whole genome shotgun sequence	6166..7002	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJER010000113.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325957 SAMN37981103-rid19950293.denovo.116, whole genome shotgun sequence	7002..7805	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOJER010000237.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325957 SAMN37981103-rid19950293.guided.062, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJER010000239.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325957 SAMN37981103-rid19950293.guided.144, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJER010000239.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325957 SAMN37981103-rid19950293.guided.144, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOJER010000157.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325957 SAMN37981103-rid19950293.denovo.161, whole genome shotgun sequence	2163..3368	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJER010000240.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325957 SAMN37981103-rid19950293.guided.165, whole genome shotgun sequence	2005..3210	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOJER010000117.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325957 SAMN37981103-rid19950293.denovo.120, whole genome shotgun sequence	6803..7484	enterobacteriales	IncFII	96.95	262 / 261	ABOJER010000113.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325957 SAMN37981103-rid19950293.denovo.116, whole genome shotgun sequence	5282..5543		enterobacteriales	IncFII	96.95	262 / 261	ABOJER010000239.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325957 SAMN37981103-rid19950293.guided.144, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOJER010000171.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325957 SAMN37981103-rid19950293.denovo.176, whole genome shotgun sequence	247..388		enterobacteriales	IncI2	100	324 / 324	ABOJER010000124.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325957 SAMN37981103-rid19950293.denovo.127, whole genome shotgun sequence	1844..2167		enterobacteriales	IncX1	100	373 / 373	ABOJER010000179.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325957 SAMN37981103-rid19950293.denovo.184, whole genome shotgun sequence	1127..1499																				avrA	ABOJER010000042.1	39484..40353	99.655	870	0						
GCA_033039995.1_PDT001953429.1_genomic.fna	Salmonella_enterica	0.5225	64.047 KB	21	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJET010000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325954 SAMN37981096-rid19950733.denovo.004, whole genome shotgun sequence	16050..16487	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJET010000140.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325954 SAMN37981096-rid19950733.guided.097, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJET010000044.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325954 SAMN37981096-rid19950733.denovo.044, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABOJET010000093.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325954 SAMN37981096-rid19950733.denovo.095, whole genome shotgun sequence	3405..3666																																																avrA	ABOJET010000012.1	81622..82491	99.54	870	0						
GCA_033040015.1_PDT001953421.1_genomic.fna	Salmonella_enterica	0.5233	74.648 KB	20	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	-:l,v:1,6	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	-	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:l,v:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJEV010000016.1 Salmonella enterica subsp. enterica serovar London strain FSIS12325776 SAMN37981057-rid19950703.denovo.016, whole genome shotgun sequence	13062..13499	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJEV010000116.1 Salmonella enterica subsp. enterica serovar London strain FSIS12325776 SAMN37981057-rid19950703.guided.069, whole genome shotgun sequence	4987..5424	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOJEV010000100.1 Salmonella enterica subsp. enterica serovar London strain FSIS12325776 SAMN37981057-rid19950703.denovo.102, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOJEV010000119.1 Salmonella enterica subsp. enterica serovar London strain FSIS12325776 SAMN37981057-rid19950703.guided.106, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJEV010000100.1 Salmonella enterica subsp. enterica serovar London strain FSIS12325776 SAMN37981057-rid19950703.denovo.102, whole genome shotgun sequence	1150..1280																																																						avrA	ABOJEV010000019.1	35197..36066	99.425	870	0						
GCA_033040035.1_PDT001953427.1_genomic.fna	Salmonella_enterica	0.5199	302.532 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_70,sucA_627,thrA_2	3405	4:i:1,2	14	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA2b,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA2b,blaCMY-2,blaTEM-1B,blaCMY-2,blaTEM-1B,floR,floR,OqxB,OqxA,qnrB19,OqxB,OqxA,qnrB19,sul2,sul3,sul2,sul3,tet(A),tet(A),bleO,bleO	1	gyrA_p.S83Y	5	Col(pHAD28),Col(pHAD28),Col(pHAD28),IncC,IncFIB(K),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_70	sucA	100	100	sucA_627	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJEW010000001.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.01, whole genome shotgun sequence	673521..673958	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJEW010000024.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.27, whole genome shotgun sequence	18736..19572	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJEW010000024.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.27, whole genome shotgun sequence	17933..18736	Streptomycin	AF321551	aadA2b	99.87	780/780	ABOJEW010000029.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.35, whole genome shotgun sequence	4493..5272	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABOJEW010000050.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.guided.22, whole genome shotgun sequence	41758..42195	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJEW010000052.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.guided.29, whole genome shotgun sequence	18777..19613	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJEW010000052.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.guided.29, whole genome shotgun sequence	17974..18777	Streptomycin	AF321551	aadA2b	99.87	780/780	ABOJEW010000054.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.guided.34, whole genome shotgun sequence	4532..5311	Spectinomycin, Streptomycin	D43625	blaCMY-2	100	1146/1146	ABOJEW010000019.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.19, whole genome shotgun sequence	45553..46698	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-1B	100	861/861	ABOJEW010000023.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.25, whole genome shotgun sequence	35144..36004	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOJEW010000051.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.guided.26, whole genome shotgun sequence	11330..12475	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-1B	100	861/861	ABOJEW010000057.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.guided.43, whole genome shotgun sequence	619..1479	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.27	1214/1215	ABOJEW010000024.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.27, whole genome shotgun sequence	22708..23921	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABOJEW010000056.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.guided.41, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	OqxB	100	3153/3153	ABOJEW010000032.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.39, whole genome shotgun sequence	597..3749	Chloramphenicol, Nalidixic acid, Ciprofloxacin, Trimethoprim	EU370913	OqxA	100	1176/1176	ABOJEW010000032.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.39, whole genome shotgun sequence	3773..4948	Chloramphenicol, Nalidixic acid, Ciprofloxacin, Trimethoprim	EU370913	qnrB19	100	645/645	ABOJEW010000034.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.42, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	OqxB	100	3153/3153	ABOJEW010000055.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.guided.38, whole genome shotgun sequence	1495..4647	Chloramphenicol, Nalidixic acid, Ciprofloxacin, Trimethoprim	EU370913	OqxA	100	1176/1176	ABOJEW010000055.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.guided.38, whole genome shotgun sequence	296..1471	Chloramphenicol, Nalidixic acid, Ciprofloxacin, Trimethoprim	EU370913	qnrB19	100	645/645	ABOJEW010000058.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.guided.45, whole genome shotgun sequence	687..1331	Ciprofloxacin	EU432277	sul2	100	816/816	ABOJEW010000024.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.27, whole genome shotgun sequence	17057..17872	Sulfamethoxazole	AY034138	sul3	100	792/792	ABOJEW010000029.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.35, whole genome shotgun sequence	2020..2811	Sulfamethoxazole	AJ459418	sul2	100	816/816	ABOJEW010000052.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.guided.29, whole genome shotgun sequence	17098..17913	Sulfamethoxazole	AY034138	sul3	100	792/792	ABOJEW010000054.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.guided.34, whole genome shotgun sequence	2059..2850	Sulfamethoxazole	AJ459418	tet(A)	100	1275/1275	ABOJEW010000024.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.27, whole genome shotgun sequence	20833..22107	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOJEW010000052.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.guided.29, whole genome shotgun sequence	20874..22148	Doxycycline, Tetracycline	AF534183	bleO	100	392/399	ABOJEW010000036.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.47, whole genome shotgun sequence	134..525	Bleomycin	AF051917	bleO	100	392/399	ABOJEW010000059.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.guided.46, whole genome shotgun sequence	175..566	Bleomycin	AF051917																																																																																																																																																																																																																																																																				gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJEW010000034.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.42, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	92.5	120 / 131	ABOJEW010000035.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.44, whole genome shotgun sequence	1958..2077		enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJEW010000058.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.guided.45, whole genome shotgun sequence	31..161		enterobacteriales	IncC	100	417 / 417	ABOJEW010000027.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.32, whole genome shotgun sequence	7660..8076		enterobacteriales	IncFIB(K)	98.93	560 / 560	ABOJEW010000031.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.37, whole genome shotgun sequence	4488..5047		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOJEW010000015.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.15, whole genome shotgun sequence	14769..14910		enterobacteriales	IncX1	98.66	374 / 374	ABOJEW010000023.1 Salmonella enterica strain PNUSAS395464 SAMN37981071-rid19950263.denovo.25, whole genome shotgun sequence	7393..7766													avrA	ABOJEW010000002.1	507947..508816	99.885	870	0						
GCA_033040055.1_PDT001953418.1_genomic.fna	Salmonella_enterica	0.5211	77.178 KB	21	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJEZ010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325806 SAMN37981059-rid19950213.denovo.012, whole genome shotgun sequence	86589..87026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJEZ010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325806 SAMN37981059-rid19950213.guided.065, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	ABOJEZ010000081.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325806 SAMN37981059-rid19950213.denovo.084, whole genome shotgun sequence	7750..8431	enterobacteriales	IncFII	96.56	262 / 261	ABOJEZ010000044.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325806 SAMN37981059-rid19950213.denovo.044, whole genome shotgun sequence	36475..36736		enterobacteriales	IncX1	100	373 / 373	ABOJEZ010000078.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325806 SAMN37981059-rid19950213.denovo.081, whole genome shotgun sequence	2153..2525																																									avrA	ABOJEZ010000042.1	39484..40353	99.655	870	0						
GCA_033040075.1_PDT001953419.1_genomic.fna	Salmonella_enterica	0.5201	66.465 KB	26	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJEY010000017.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325830 SAMN37981062-rid19950693.denovo.017, whole genome shotgun sequence	52262..52699	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJEY010000094.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325830 SAMN37981062-rid19950693.denovo.097, whole genome shotgun sequence	6411..7247	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOJEY010000094.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325830 SAMN37981062-rid19950693.denovo.097, whole genome shotgun sequence	7247..8050	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOJEY010000161.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325830 SAMN37981062-rid19950693.guided.070, whole genome shotgun sequence	12447..12884	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJEY010000163.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325830 SAMN37981062-rid19950693.guided.111, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOJEY010000163.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325830 SAMN37981062-rid19950693.guided.111, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOJEY010000114.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325830 SAMN37981062-rid19950693.denovo.118, whole genome shotgun sequence	2359..3564	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJEY010000164.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325830 SAMN37981062-rid19950693.guided.119, whole genome shotgun sequence	2310..3515	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOJEY010000120.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325830 SAMN37981062-rid19950693.denovo.125, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABOJEY010000094.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325830 SAMN37981062-rid19950693.denovo.097, whole genome shotgun sequence	5527..5788		enterobacteriales	IncFII	96.95	262 / 261	ABOJEY010000163.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325830 SAMN37981062-rid19950693.guided.111, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOJEY010000100.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325830 SAMN37981062-rid19950693.denovo.103, whole genome shotgun sequence	4198..4339		enterobacteriales	IncX1	100	373 / 373	ABOJEY010000101.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325830 SAMN37981062-rid19950693.denovo.104, whole genome shotgun sequence	2153..2525																											avrA	ABOJEY010000045.1	39484..40353	99.655	870	0						
GCA_033040215.1_PDT001953315.1_genomic.fna	Salmonella_enterica	0.5169	220.84 KB	9	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	11	aac(6')-Iaa,aac(3)-VIa,aadA1,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(3')-Ia,aac(3)-VIa,aadA1,aph(6)-Id,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,fosA7,fosA7,mph(A),mph(A),sul1,sul1,tet(B),tet(B)	1	parC_p.T57S	2	IncHI2,IncX4	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJFF010000001.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.denovo.01, whole genome shotgun sequence	265277..265714	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOJFF010000040.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.denovo.42, whole genome shotgun sequence	8524..9426	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABOJFF010000040.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.denovo.42, whole genome shotgun sequence	9590..10381	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	99.88	816/816	ABOJFF010000042.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.denovo.45, whole genome shotgun sequence	6733..7548	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EF015636	aph(6)-Id	100	806/837	ABOJFF010000056.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.denovo.68, whole genome shotgun sequence	1..806	Streptomycin	M28829	aph(3'')-Ib	99.87	791/804	ABOJFF010000057.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.denovo.70, whole genome shotgun sequence	1..791	Streptomycin	AF321551	aph(3'')-Ib	99.87	791/804	ABOJFF010000057.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.denovo.70, whole genome shotgun sequence	1..791	Streptomycin	AF313472	aph(3'')-Ib	99.87	791/804	ABOJFF010000057.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.denovo.70, whole genome shotgun sequence	1..791	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABOJFF010000063.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.guided.38, whole genome shotgun sequence	5721..6158	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.88	816/816	ABOJFF010000065.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.guided.46, whole genome shotgun sequence	148..963	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EF015636	aac(3)-VIa	100	903/903	ABOJFF010000066.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.guided.48, whole genome shotgun sequence	37..939	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	100	792/792	ABOJFF010000070.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.guided.58, whole genome shotgun sequence	1395..2186	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOJFF010000072.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.guided.65, whole genome shotgun sequence	32..868	Streptomycin	M28829	aph(6)-Id	99.88	837/837	ABOJFF010000073.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.guided.66, whole genome shotgun sequence	32..868	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOJFF010000074.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.guided.69, whole genome shotgun sequence	30..832	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJFF010000074.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.guided.69, whole genome shotgun sequence	29..832	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJFF010000074.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.guided.69, whole genome shotgun sequence	29..832	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJFF010000074.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.guided.69, whole genome shotgun sequence	29..832	Streptomycin	AF321550	blaTEM-1B	100	861/861	ABOJFF010000042.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.denovo.45, whole genome shotgun sequence	335..1195	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOJFF010000065.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.guided.46, whole genome shotgun sequence	6501..7361	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	fosA7	97.16	423/423	ABOJFF010000008.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.denovo.08, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOJFF010000064.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.guided.44, whole genome shotgun sequence	8107..8529	Fosfomycin	LAPJ01000014	mph(A)	100	906/906	ABOJFF010000047.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.denovo.52, whole genome shotgun sequence	3117..4022	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	ABOJFF010000067.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.guided.53, whole genome shotgun sequence	110..1015	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	sul1	100	840/840	ABOJFF010000040.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.denovo.42, whole genome shotgun sequence	1685..2524	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJFF010000069.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.guided.56, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABOJFF010000045.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.denovo.50, whole genome shotgun sequence	320..1525	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJFF010000068.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.guided.55, whole genome shotgun sequence	1663..2868	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOJFF010000043.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.denovo.47, whole genome shotgun sequence	1017..1343	enterobacteriales	IncX4	98.88	712 / 712	ABOJFF010000031.1 Salmonella enterica strain PNUSAS395327 SAMN37976445-rid19949133.denovo.31, whole genome shotgun sequence	28681..29392																																																avrA	ABOJFF010000002.1	39459..40328	99.195	870	0						
GCA_033040235.1_PDT001953506.1_genomic.fna	Salmonella_enterica	0.5206	306.395 KB	6	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJFH010000001.1 Salmonella enterica strain PNUSAS395514 SAMN37982026-rid19951153.denovo.01, whole genome shotgun sequence	503336..503773	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJFH010000034.1 Salmonella enterica strain PNUSAS395514 SAMN37982026-rid19951153.guided.20, whole genome shotgun sequence	12447..12884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJFH010000002.1	144854..145723	99.31	870	0						
GCA_033040255.1_PDT001953494.1_genomic.fna	Salmonella_enterica	0.5203	469.992 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJFL010000001.1 Salmonella enterica strain PNUSAS395509 SAMN37982015-rid19951083.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJFL010000029.1 Salmonella enterica strain PNUSAS395509 SAMN37982015-rid19951083.guided.16, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJFL010000021.1 Salmonella enterica strain PNUSAS395509 SAMN37982015-rid19951083.denovo.22, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOJFL010000023.1 Salmonella enterica strain PNUSAS395509 SAMN37982015-rid19951083.denovo.26, whole genome shotgun sequence	3436..3697		enterobacteriales	IncX1	98.93	374 / 374	ABOJFL010000017.1 Salmonella enterica strain PNUSAS395509 SAMN37982015-rid19951083.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABOJFL010000007.1	175109..175978	99.54	870	0						
GCA_033040275.1_PDT001953491.1_genomic.fna	Salmonella_enterica	0.5214	494.612 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOJFM010000001.1 Salmonella enterica strain PNUSAS395486 SAMN37981116-rid19951063.denovo.01, whole genome shotgun sequence	814928..815365	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOJFM010000028.1 Salmonella enterica strain PNUSAS395486 SAMN37981116-rid19951063.guided.23, whole genome shotgun sequence	2581..3018	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOJFM010000019.1 Salmonella enterica strain PNUSAS395486 SAMN37981116-rid19951063.denovo.21, whole genome shotgun sequence	239..369																																																						avrA	ABOJFM010000005.1	140114..140983	99.425	870	0						
GCA_033040295.1_PDT001953503.1_genomic.fna	Salmonella_enterica	0.5208	453.214 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	6	aac(6')-Iaa,aadA2,aac(6')-Iaa,aadA2,blaTEM-1C,blaTEM-1C,mph(A),mph(A),sul1,sul1,dfrA12,dfrA12	1	parC_p.T57S	2	IncFII,IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOJFJ010000001.1 Salmonella enterica strain PNUSAS395517 SAMN37982020-rid19951133.denovo.01, whole genome shotgun sequence	510588..511025	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOJFJ010000011.1 Salmonella enterica strain PNUSAS395517 SAMN37982020-rid19951133.denovo.11, whole genome shotgun sequence	33301..34092	Spectinomycin, Streptomycin	JQ364967	aac(6')-Iaa	96.58	438/438	ABOJFJ010000025.1 Salmonella enterica strain PNUSAS395517 SAMN37982020-rid19951133.guided.21, whole genome shotgun sequence	20599..21036	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOJFJ010000026.1 Salmonella enterica strain PNUSAS395517 SAMN37982020-rid19951133.guided.22, whole genome shotgun sequence	15774..16565	Spectinomycin, Streptomycin	JQ364967	blaTEM-1C	100	861/861	ABOJFJ010000011.1 Salmonella enterica strain PNUSAS395517 SAMN37982020-rid19951133.denovo.11, whole genome shotgun sequence	2393..3253	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1C	100	861/861	ABOJFJ010000027.1 Salmonella enterica strain PNUSAS395517 SAMN37982020-rid19951133.guided.23, whole genome shotgun sequence	10534..11394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	mph(A)	100	906/906	ABOJFJ010000011.1 Salmonella enterica strain PNUSAS395517 SAMN37982020-rid19951133.denovo.11, whole genome shotgun sequence	25741..26646	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	100	906/906	ABOJFJ010000028.1 Salmonella enterica strain PNUSAS395517 SAMN37982020-rid19951133.guided.24, whole genome shotgun sequence	1082..1987	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	sul1	100	840/840	ABOJFJ010000011.1 Salmonella enterica strain PNUSAS395517 SAMN37982020-rid19951133.denovo.11, whole genome shotgun sequence	31957..32796	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJFJ010000026.1 Salmonella enterica strain PNUSAS395517 SAMN37982020-rid19951133.guided.22, whole genome shotgun sequence	17070..17909	Sulfamethoxazole	U12338	dfrA12	100	498/498	ABOJFJ010000011.1 Salmonella enterica strain PNUSAS395517 SAMN37982020-rid19951133.denovo.11, whole genome shotgun sequence	34500..34997	Trimethoprim	AM040708	dfrA12	100	498/498	ABOJFJ010000026.1 Salmonella enterica strain PNUSAS395517 SAMN37982020-rid19951133.guided.22, whole genome shotgun sequence	14869..15366	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII	100	261 / 261	ABOJFJ010000011.1 Salmonella enterica strain PNUSAS395517 SAMN37982020-rid19951133.denovo.11, whole genome shotgun sequence	17622..17882	enterobacteriales	IncFII(p96A)	100	534 / 534	ABOJFJ010000014.1 Salmonella enterica strain PNUSAS395517 SAMN37982020-rid19951133.denovo.14, whole genome shotgun sequence	34958..35491																																																avrA	ABOJFJ010000002.1	496630..497498	99.425	870	0						
GCA_033040315.1_PDT001953496.1_genomic.fna	Salmonella_enterica	0.5211	412.406 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJFI010000001.1 Salmonella enterica strain PNUSAS395508 SAMN37982016-rid19951093.denovo.01, whole genome shotgun sequence	414583..415020	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJFI010000020.1 Salmonella enterica strain PNUSAS395508 SAMN37982016-rid19951093.guided.19, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033040335.1_PDT001953482.1_genomic.fna	Salmonella_enterica	0.5219	47.25 KB	30	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJFG010000019.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314608 SAMN37982188-rid19950533.denovo.019, whole genome shotgun sequence	12462..12899	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJFG010000209.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314608 SAMN37982188-rid19950533.guided.074, whole genome shotgun sequence	10647..11084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.68	682 / 682	ABOJFG010000134.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314608 SAMN37982188-rid19950533.denovo.137, whole genome shotgun sequence	1986..2667	enterobacteriales	IncFII	96.56	262 / 261	ABOJFG010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314608 SAMN37982188-rid19950533.denovo.043, whole genome shotgun sequence	3238..3499		enterobacteriales	IncX1	100	373 / 373	ABOJFG010000155.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314608 SAMN37982188-rid19950533.denovo.158, whole genome shotgun sequence	2153..2525																																									avrA	ABOJFG010000034.1	39484..40353	99.655	870	0						
GCA_033040355.1_PDT001953450.1_genomic.fna	Salmonella_enterica	0.5214	302.102 KB	6	aroC_301,dnaN_272,hemD_48,hisD_16,purE_40,sucA_13,thrA_3	864	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_301	dnaN	100	100	dnaN_272	hemD	100	100	hemD_48	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_3	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOJFN010000003.1 Salmonella enterica strain PNUSAS395478 SAMN37981108-rid19950403.denovo.03, whole genome shotgun sequence	287429..287866	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOJFN010000036.1 Salmonella enterica strain PNUSAS395478 SAMN37981108-rid19950403.guided.22, whole genome shotgun sequence	16272..16709	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033040375.1_PDT001953463.1_genomic.fna	Salmonella_enterica	0.521	489.888 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJFK010000001.1 Salmonella enterica strain PNUSAS395475 SAMN37981105-rid19950883.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJFK010000024.1 Salmonella enterica strain PNUSAS395475 SAMN37981105-rid19950883.guided.14, whole genome shotgun sequence	14816..15253	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJFK010000012.1 Salmonella enterica strain PNUSAS395475 SAMN37981105-rid19950883.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOJFK010000012.1 Salmonella enterica strain PNUSAS395475 SAMN37981105-rid19950883.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABOJFK010000002.1	553636..554505	99.54	870	0						
GCA_033040395.1_PDT001953436.1_genomic.fna	Salmonella_enterica	0.521	489.888 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJFR010000001.1 Salmonella enterica strain PNUSAS395476 SAMN37981106-rid19950763.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJFR010000022.1 Salmonella enterica strain PNUSAS395476 SAMN37981106-rid19950763.guided.12, whole genome shotgun sequence	25193..25630	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJFR010000012.1 Salmonella enterica strain PNUSAS395476 SAMN37981106-rid19950763.denovo.14, whole genome shotgun sequence	40578..41220	enterobacteriales	IncFII(S)	100	262 / 262	ABOJFR010000015.1 Salmonella enterica strain PNUSAS395476 SAMN37981106-rid19950763.denovo.18, whole genome shotgun sequence	3403..3664																																																avrA	ABOJFR010000002.1	553636..554505	99.54	870	0						
GCA_033040415.1_PDT001953422.1_genomic.fna	Salmonella_enterica	0.5225	87.752 KB	18	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJFP010000005.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12325838 SAMN37981072-rid19950233.denovo.005, whole genome shotgun sequence	52263..52700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJFP010000112.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12325838 SAMN37981072-rid19950233.guided.076, whole genome shotgun sequence	7496..7933	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJFP010000010.1	102241..103110	99.77	870	0						
GCA_033040455.1_PDT001953435.1_genomic.fna	Salmonella_enterica	0.5216	89.287 KB	20	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJFO010000012.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325831 SAMN37981064-rid19950313.denovo.12, whole genome shotgun sequence	52486..52923	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJFO010000098.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325831 SAMN37981064-rid19950313.guided.43, whole genome shotgun sequence	14068..14505	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJFO010000010.1	109091..109960	99.54	870	0						
GCA_033040475.1_PDT001953489.1_genomic.fna	Salmonella_enterica	0.5233	58.539 KB	29	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJFU010000012.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.denovo.012, whole genome shotgun sequence	76131..76568	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJFU010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.denovo.079, whole genome shotgun sequence	18442..19233	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJFU010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.denovo.079, whole genome shotgun sequence	18442..19233	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOJFU010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.denovo.125, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOJFU010000118.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.denovo.125, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOJFU010000168.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.guided.057, whole genome shotgun sequence	29387..29824	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJFU010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.guided.111, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJFU010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.guided.111, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOJFU010000174.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.guided.124, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOJFU010000174.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.guided.124, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOJFU010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.denovo.119, whole genome shotgun sequence	3168..4381	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOJFU010000173.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.guided.123, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOJFU010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.denovo.079, whole genome shotgun sequence	17098..17937	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJFU010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.guided.111, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOJFU010000078.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.denovo.079, whole genome shotgun sequence	3382..4581	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJFU010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.guided.102, whole genome shotgun sequence	7874..9073	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOJFU010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314628 SAMN37982369-rid19951053.denovo.117, whole genome shotgun sequence	2137..2696																																																						avrA	ABOJFU010000006.1	81700..82569	99.655	870	0						
GCA_033040495.1_PDT001953417.1_genomic.fna	Salmonella_enterica	0.5238	60.845 KB	26	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	4	aac(6')-Iaa,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	1	IncQ1,IncQ1	aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJFS010000018.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325087 SAMN37981053-rid19950203.denovo.018, whole genome shotgun sequence	58825..59262	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	671/804	ABOJFS010000095.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325087 SAMN37981053-rid19950203.denovo.100, whole genome shotgun sequence	8803..9473	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOJFS010000143.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325087 SAMN37981053-rid19950203.guided.086, whole genome shotgun sequence	13899..14336	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	695/804	ABOJFS010000144.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325087 SAMN37981053-rid19950203.guided.099, whole genome shotgun sequence	7879..8573	Streptomycin	AF321551	sul2	100	816/816	ABOJFS010000095.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325087 SAMN37981053-rid19950203.denovo.100, whole genome shotgun sequence	85..900	Sulfamethoxazole	FN995456	sul2	100	816/816	ABOJFS010000144.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325087 SAMN37981053-rid19950203.guided.099, whole genome shotgun sequence	7003..7818	Sulfamethoxazole	FN995456	tet(A)	100	1200/1200	ABOJFS010000095.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325087 SAMN37981053-rid19950203.denovo.100, whole genome shotgun sequence	6703..7902	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJFS010000144.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325087 SAMN37981053-rid19950203.guided.099, whole genome shotgun sequence	1..1200	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncQ1	100	796 / 796	ABOJFS010000095.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325087 SAMN37981053-rid19950203.denovo.100, whole genome shotgun sequence	2240..3035	enterobacteriales	IncQ1	100	796 / 796	ABOJFS010000144.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325087 SAMN37981053-rid19950203.guided.099, whole genome shotgun sequence	4868..5663																																																											
GCA_033040515.1_PDT001953488.1_genomic.fna	Salmonella_enterica	0.5211	49.876 KB	31	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJFT010000030.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314630 SAMN37982371-rid19951043.denovo.030, whole genome shotgun sequence	12511..12948	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJFT010000104.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314630 SAMN37982371-rid19951043.denovo.107, whole genome shotgun sequence	6223..7059	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOJFT010000104.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314630 SAMN37982371-rid19951043.denovo.107, whole genome shotgun sequence	7059..7862	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOJFT010000203.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314630 SAMN37982371-rid19951043.guided.094, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJFT010000205.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314630 SAMN37982371-rid19951043.guided.144, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOJFT010000205.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314630 SAMN37982371-rid19951043.guided.144, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOJFT010000145.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314630 SAMN37982371-rid19951043.denovo.149, whole genome shotgun sequence	1155..1836	enterobacteriales	IncFII	96.95	262 / 261	ABOJFT010000104.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314630 SAMN37982371-rid19951043.denovo.107, whole genome shotgun sequence	5339..5600		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOJFT010000124.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314630 SAMN37982371-rid19951043.denovo.127, whole genome shotgun sequence	4467..4608		enterobacteriales	IncX1	100	373 / 373	ABOJFT010000102.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314630 SAMN37982371-rid19951043.denovo.104, whole genome shotgun sequence	1136..1508																																		avrA	ABOJFT010000041.1	39484..40353	99.655	870	0						
GCA_033040535.1_PDT001953495.1_genomic.fna	Salmonella_enterica	0.5201	248.284 KB	7	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJFW010000007.1 Salmonella enterica strain PNUSAS395512 SAMN37982018-rid19950583.denovo.07, whole genome shotgun sequence	79916..80353	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJFW010000040.1 Salmonella enterica strain PNUSAS395512 SAMN37982018-rid19950583.guided.25, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJFW010000001.1	144854..145723	99.31	870	0						
GCA_033040555.1_PDT001953493.1_genomic.fna	Salmonella_enterica	0.5213	207.446 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJFV010000001.1 Salmonella enterica strain PNUSAS395515 SAMN37982014-rid19951073.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJFV010000048.1 Salmonella enterica strain PNUSAS395515 SAMN37982014-rid19951073.guided.35, whole genome shotgun sequence	9457..9894	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJFV010000008.1	174491..175359	99.77	870	0						
GCA_033043295.1_PDT001953850.1_genomic.fna	Salmonella_enterica	0.5195	65.268 KB	23	aroC_353*,dnaN_288,hemD_883,hisD_424,purE_523,sucA_492,thrA_291	Unknown	1,3,19:z4,z23:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	99.6007984031936	100	aroC_353*	dnaN	100	100	dnaN_288	hemD	100	100	hemD_883	hisD	100	100	hisD_424	purE	100	100	purE_523	sucA	100	100	sucA_492	thrA	100	100	thrA_291	1,3,19	z4,z23	1,2	Salmonella enterica subspecies enterica (subspecies I)	I 1,3,19:z4,z23:1,2	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	DAQMYA010000058.1 TPA_asm: Salmonella enterica strain AUSMDU00041726 SAMN37985511-rid19954423.denovo.060, whole genome shotgun sequence	14088..14525	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	DAQMYA010000184.1 TPA_asm: Salmonella enterica strain AUSMDU00041726 SAMN37985511-rid19954423.guided.071, whole genome shotgun sequence	7433..7870	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033043305.1_PDT001953849.1_genomic.fna	Salmonella_enterica	0.5234	33.094 KB	41	aroC_147,dnaN_14,hemD_21,hisD_88,purE_6,sucA_676,thrA_12	3774	-:l,v:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_88	purE	100	100	purE_6	sucA	100	100	sucA_676	thrA	100	100	thrA_12	-	l,v	-	Salmonella enterica subspecies enterica (subspecies I)	I -:l,v:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQMXZ010000084.1 TPA_asm: Salmonella enterica strain AUSMDU00072216 SAMN37985512-rid19954413.denovo.084, whole genome shotgun sequence	11313..11750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQMXZ010000259.1 TPA_asm: Salmonella enterica strain AUSMDU00072216 SAMN37985512-rid19954413.guided.185, whole genome shotgun sequence	2648..3085	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQMXZ010000012.1	60668..61537	99.77	870	0						
GCA_033043335.1_PDT001953851.1_genomic.fna	Salmonella_enterica	0.5206	97.993 KB	15	aroC_95,dnaN_245,hemD_870*,hisD_449,purE_55,sucA_67,thrA_1084*	Unknown	2:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_95	dnaN	100	100	dnaN_245	hemD	99.7685185185185	100	hemD_870*	hisD	100	100	hisD_449	purE	100	100	purE_55	sucA	100	100	sucA_67	thrA	99.8003992015968	100	thrA_1084*	2	b	e,n,x	Salmonella enterica subspecies salamae (subspecies II)	II 2:b:e,n,x	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	95.66	438/438	DAQMYB010000014.1 TPA_asm: Salmonella enterica strain AUSMDU00040676 SAMN37985510-rid19954433.denovo.14, whole genome shotgun sequence	40338..40775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.66	438/438	DAQMYB010000096.1 TPA_asm: Salmonella enterica strain AUSMDU00040676 SAMN37985510-rid19954433.guided.18, whole genome shotgun sequence	44206..44643	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033043355.1_PDT001953852.1_genomic.fna	Salmonella_enterica	0.5183	81.653 KB	18	aroC_353,dnaN_288,hemD_219,hisD_275,purE_523,sucA_295,thrA_1511*	Unknown	-:k:z35	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_353	dnaN	100	100	dnaN_288	hemD	100	100	hemD_219	hisD	100	100	hisD_275	purE	100	100	purE_523	sucA	100	100	sucA_295	thrA	99.8003992015968	100	thrA_1511*	-	k	z35	Salmonella enterica subspecies enterica (subspecies I)	I -:k:z35	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	DAQMXY010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00026636 SAMN37985509-rid19954443.denovo.009, whole genome shotgun sequence	105294..105731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	DAQMXY010000133.1 TPA_asm: Salmonella enterica strain AUSMDU00026636 SAMN37985509-rid19954443.guided.055, whole genome shotgun sequence	16471..16908	Amikacin, Tobramycin	NC_003197	fosA7	94.33	423/423	DAQMXY010000057.1 TPA_asm: Salmonella enterica strain AUSMDU00026636 SAMN37985509-rid19954443.denovo.061, whole genome shotgun sequence	1984..2406	Fosfomycin	LAPJ01000014	fosA7	94.33	423/423	DAQMXY010000136.1 TPA_asm: Salmonella enterica strain AUSMDU00026636 SAMN37985509-rid19954443.guided.062, whole genome shotgun sequence	20640..21062	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033043395.1_PDT001953848.1_genomic.fna	Salmonella_enterica	0.5212	162.036 KB	11	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOJFX010000001.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32310517 SAMN37985517-rid19954403.denovo.01, whole genome shotgun sequence	223451..223888	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJFX010000066.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32310517 SAMN37985517-rid19954403.guided.46, whole genome shotgun sequence	13932..14369	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJFX010000040.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS32310517 SAMN37985517-rid19954403.denovo.41, whole genome shotgun sequence	6429..6570																																																						avrA	ABOJFX010000006.1	149711..150580	99.425	870	0						
GCA_033043415.1_PDT001953846.1_genomic.fna	Salmonella_enterica	0.5181	73.156 KB	19	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	5	IncFIA(HI1),IncFII(pSE11),IncHI1A,IncHI1B(R27),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJGA010000022.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310514 SAMN37985514-rid19954383.denovo.023, whole genome shotgun sequence	48278..48715	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJGA010000166.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310514 SAMN37985514-rid19954383.guided.052, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOJGA010000110.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310514 SAMN37985514-rid19954383.denovo.114, whole genome shotgun sequence	2235..3440	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJGA010000168.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310514 SAMN37985514-rid19954383.guided.113, whole genome shotgun sequence	2348..3553	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIA(HI1)	100	388 / 388	ABOJGA010000068.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310514 SAMN37985514-rid19954383.denovo.070, whole genome shotgun sequence	767..1154	enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABOJGA010000081.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310514 SAMN37985514-rid19954383.denovo.084, whole genome shotgun sequence	4655..4914		enterobacteriales	IncHI1A	99.76	420 / 420	ABOJGA010000083.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310514 SAMN37985514-rid19954383.denovo.086, whole genome shotgun sequence	598..1017		enterobacteriales	IncHI1B(R27)	100	540 / 540	ABOJGA010000046.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310514 SAMN37985514-rid19954383.denovo.047, whole genome shotgun sequence	23142..23681	R27	enterobacteriales	IncX1	100	373 / 373	ABOJGA010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS32310514 SAMN37985514-rid19954383.denovo.135, whole genome shotgun sequence	1156..1528																											avrA	ABOJGA010000035.1	39484..40353	99.655	870	0						
GCA_033043435.1_PDT001953847.1_genomic.fna	Salmonella_enterica	0.5217	62.31 KB	22	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJFY010000020.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310516 SAMN37985516-rid19954393.denovo.020, whole genome shotgun sequence	15447..15884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJFY010000153.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310516 SAMN37985516-rid19954393.guided.073, whole genome shotgun sequence	15470..15907	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJFY010000115.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310516 SAMN37985516-rid19954393.denovo.118, whole genome shotgun sequence	2061..2703	enterobacteriales	IncFII(S)	100	262 / 262	ABOJFY010000105.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310516 SAMN37985516-rid19954393.denovo.108, whole genome shotgun sequence	3397..3658		enterobacteriales	IncX1	98.93	374 / 374	ABOJFY010000068.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS32310516 SAMN37985516-rid19954393.denovo.068, whole genome shotgun sequence	21633..22006																																									avrA	ABOJFY010000006.1	43604..44473	99.54	870	0						
GCA_033043455.1_PDT001953845.1_genomic.fna	Salmonella_enterica	0.5221	95.397 KB	16	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJGG010000047.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310515 SAMN37985515-rid19954373.denovo.047, whole genome shotgun sequence	14089..14526	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJGG010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310515 SAMN37985515-rid19954373.denovo.067, whole genome shotgun sequence	11925..12716	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJGG010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310515 SAMN37985515-rid19954373.denovo.067, whole genome shotgun sequence	11925..12716	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOJGG010000113.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310515 SAMN37985515-rid19954373.denovo.120, whole genome shotgun sequence	92..907	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	X62115	aac(6')-Iaa	97.49	438/438	ABOJGG010000137.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310515 SAMN37985515-rid19954373.guided.071, whole genome shotgun sequence	909..1346	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJGG010000138.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310515 SAMN37985515-rid19954373.guided.079, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJGG010000138.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310515 SAMN37985515-rid19954373.guided.079, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOJGG010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310515 SAMN37985515-rid19954373.guided.119, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin	X62115	sul1	100	840/840	ABOJGG010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310515 SAMN37985515-rid19954373.denovo.067, whole genome shotgun sequence	10581..11420	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJGG010000138.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310515 SAMN37985515-rid19954373.guided.079, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOJGG010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310515 SAMN37985515-rid19954373.denovo.083, whole genome shotgun sequence	1864..3063	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJGG010000139.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310515 SAMN37985515-rid19954373.guided.099, whole genome shotgun sequence	1811..3010	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOJGG010000090.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310515 SAMN37985515-rid19954373.denovo.094, whole genome shotgun sequence	664..1137	Trimethoprim	AF393510	dfrA14	100	474/474	ABOJGG010000140.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310515 SAMN37985515-rid19954373.guided.106, whole genome shotgun sequence	156..629	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOJGG010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS32310515 SAMN37985515-rid19954373.denovo.097, whole genome shotgun sequence	1005..1564																																																						avrA	ABOJGG010000009.1	28858..29727	99.655	870	0						
GCA_033043515.1_PDT001953841.1_genomic.fna	Salmonella_enterica	0.5212	78.488 KB	21	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJGI010000002.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310376 SAMN37985508-rid19954333.denovo.002, whole genome shotgun sequence	32156..32593	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJGI010000125.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310376 SAMN37985508-rid19954333.guided.056, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOJGI010000097.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS32310376 SAMN37985508-rid19954333.denovo.100, whole genome shotgun sequence	1708..1838																																																						avrA	ABOJGI010000029.1	62207..63076	98.966	870	0						
GCA_033043555.1_PDT001953844.1_genomic.fna	Salmonella_enterica	0.5236	45.843 KB	32	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	2	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-55,blaCTX-M-55	1	parC_p.T57S	3	Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJGH010000063.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32310513 SAMN37985513-rid19954363.denovo.064, whole genome shotgun sequence	12471..12908	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJGH010000209.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32310513 SAMN37985513-rid19954363.guided.096, whole genome shotgun sequence	14089..14526	Amikacin, Tobramycin	NC_003197	blaCTX-M-55	100	876/876	ABOJGH010000157.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32310513 SAMN37985513-rid19954363.denovo.161, whole genome shotgun sequence	244..1119	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789	blaCTX-M-55	100	876/876	ABOJGH010000210.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32310513 SAMN37985513-rid19954363.guided.160, whole genome shotgun sequence	275..1150	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	DQ810789																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOJGH010000152.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32310513 SAMN37985513-rid19954363.denovo.155, whole genome shotgun sequence	186..316	enterobacteriales	Col440I	94.59	111 / 114	ABOJGH010000141.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32310513 SAMN37985513-rid19954363.denovo.144, whole genome shotgun sequence	3175..3285		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJGH010000164.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS32310513 SAMN37985513-rid19954363.denovo.168, whole genome shotgun sequence	254..395																																									avrA	ABOJGH010000001.1	2346..3215	99.425	870	0						
GCA_033044035.1_PDT001953791.1_genomic.fna	Salmonella_enterica	0.5213	397.165 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	pSL483	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJHH010000001.1 Salmonella enterica strain PNUSAS395673 SAMN37983935-rid19953753.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJHH010000030.1 Salmonella enterica strain PNUSAS395673 SAMN37983935-rid19953753.guided.12, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	pSL483	100	995 / 995	ABOJHH010000018.1 Salmonella enterica strain PNUSAS395673 SAMN37983935-rid19953753.denovo.20, whole genome shotgun sequence	27845..28839																																																						avrA	ABOJHH010000003.1	39524..40393	99.655	870	0						
GCA_033044055.1_PDT001953792.1_genomic.fna	Salmonella_enterica	0.5215	691.893 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJHG010000001.1 Salmonella enterica strain PNUSAS395652 SAMN37983913-rid19953763.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJHG010000016.1 Salmonella enterica strain PNUSAS395652 SAMN37983913-rid19953763.guided.08, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJHG010000002.1	516255..517125	99.656	871	0						
GCA_033044115.1_PDT001953789.1_genomic.fna	Salmonella_enterica	0.5217	681.425 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOJHJ010000001.1 Salmonella enterica strain PNUSAS395648 SAMN37983916-rid19952143.denovo.01, whole genome shotgun sequence	594419..594856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOJHJ010000020.1 Salmonella enterica strain PNUSAS395648 SAMN37983916-rid19952143.guided.11, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJHJ010000004.1	498755..499623	99.425	870	0						
GCA_033044135.1_PDT001953790.1_genomic.fna	Salmonella_enterica	0.5219	550.554 KB	3	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	6	aac(6')-Iaa,aadA7,aac(3)-Id,aac(6')-Iaa,aadA7,aac(3)-Id,blaTEM-1B,blaTEM-1B,sul1,sul1,tet(A),tet(A)	4	gyrA_p.S83F,gyrA_p.D87Y,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJHI010000001.1 Salmonella enterica strain PNUSAS395675 SAMN37983926-rid19954033.denovo.01, whole genome shotgun sequence	988070..988507	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	ABOJHI010000019.1 Salmonella enterica strain PNUSAS395675 SAMN37983926-rid19954033.denovo.23, whole genome shotgun sequence	11943..12740	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	ABOJHI010000019.1 Salmonella enterica strain PNUSAS395675 SAMN37983926-rid19954033.denovo.23, whole genome shotgun sequence	12816..13292	Gentamicin, Astromicin, Fortimicin	AB114632	aac(6')-Iaa	98.63	438/438	ABOJHI010000029.1 Salmonella enterica strain PNUSAS395675 SAMN37983926-rid19954033.guided.17, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	ABOJHI010000030.1 Salmonella enterica strain PNUSAS395675 SAMN37983926-rid19954033.guided.21, whole genome shotgun sequence	1699..2496	Spectinomycin, Streptomycin	AF224733	aac(3)-Id	100	477/477	ABOJHI010000030.1 Salmonella enterica strain PNUSAS395675 SAMN37983926-rid19954033.guided.21, whole genome shotgun sequence	1147..1623	Gentamicin, Astromicin, Fortimicin	AB114632	blaTEM-1B	100	861/861	ABOJHI010000022.1 Salmonella enterica strain PNUSAS395675 SAMN37983926-rid19954033.denovo.27, whole genome shotgun sequence	406..1266	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOJHI010000032.1 Salmonella enterica strain PNUSAS395675 SAMN37983926-rid19954033.guided.26, whole genome shotgun sequence	966..1826	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul1	100	840/840	ABOJHI010000019.1 Salmonella enterica strain PNUSAS395675 SAMN37983926-rid19954033.denovo.23, whole genome shotgun sequence	10599..11438	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJHI010000030.1 Salmonella enterica strain PNUSAS395675 SAMN37983926-rid19954033.guided.21, whole genome shotgun sequence	3001..3840	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOJHI010000019.1 Salmonella enterica strain PNUSAS395675 SAMN37983926-rid19954033.denovo.23, whole genome shotgun sequence	2341..3540	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJHI010000030.1 Salmonella enterica strain PNUSAS395675 SAMN37983926-rid19954033.guided.21, whole genome shotgun sequence	10899..12098	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	ABOJHI010000003.1	39545..40414	99.31	870	0						
GCA_033044145.1_PDT001953788.1_genomic.fna	Salmonella_enterica	0.5216	407.17 KB	3	aroC_485,dnaN_71,hemD_365,hisD_130,purE_6,sucA_162,thrA_115	2059	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_485	dnaN	100	100	dnaN_71	hemD	100	100	hemD_365	hisD	100	100	hisD_130	purE	100	100	purE_6	sucA	100	100	sucA_162	thrA	100	100	thrA_115	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJHK010000001.1 Salmonella enterica strain PNUSAS394568 SAMN37984252-rid19953743.denovo.01, whole genome shotgun sequence	764585..765022	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJHK010000026.1 Salmonella enterica strain PNUSAS394568 SAMN37984252-rid19953743.guided.19, whole genome shotgun sequence	979..1416	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJHK010000002.1	150267..151135	99.425	870	0						
GCA_033044175.1_PDT001953787.1_genomic.fna	Salmonella_enterica	0.5209	345.029 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJHL010000002.1 Salmonella enterica strain PNUSAS395672 SAMN37983924-rid19953733.denovo.02, whole genome shotgun sequence	342460..342897	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJHL010000037.1 Salmonella enterica strain PNUSAS395672 SAMN37983924-rid19953733.guided.27, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJHL010000011.1	94913..95781	99.195	870	0						
GCA_033044195.1_PDT001953786.1_genomic.fna	Salmonella_enterica	0.5205	424.392 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOJHN010000002.1 Salmonella enterica strain PNUSAS395655 SAMN37983933-rid19953723.denovo.02, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.34	355/438	ABOJHN010000026.1 Salmonella enterica strain PNUSAS395655 SAMN37983933-rid19953723.guided.20, whole genome shotgun sequence	1..355	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOJHN010000014.1 Salmonella enterica strain PNUSAS395655 SAMN37983933-rid19953723.denovo.14, whole genome shotgun sequence	34929..35462																																																						avrA	ABOJHN010000003.1	491327..492195	99.425	870	0						
GCA_033044215.1_PDT001953785.1_genomic.fna	Salmonella_enterica	0.5206	406.452 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJHM010000001.1 Salmonella enterica strain PNUSAS394569 SAMN37984251-rid19953713.denovo.01, whole genome shotgun sequence	292090..292527	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJHM010000032.1 Salmonella enterica strain PNUSAS394569 SAMN37984251-rid19953713.guided.27, whole genome shotgun sequence	3604..4041	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJHM010000020.1 Salmonella enterica strain PNUSAS394569 SAMN37984251-rid19953713.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOJHM010000022.1 Salmonella enterica strain PNUSAS394569 SAMN37984251-rid19953713.denovo.24, whole genome shotgun sequence	3388..3649		enterobacteriales	IncX1	98.66	374 / 374	ABOJHM010000016.1 Salmonella enterica strain PNUSAS394569 SAMN37984251-rid19953713.denovo.16, whole genome shotgun sequence	18242..18615																																									avrA	ABOJHM010000002.1	505852..506721	99.54	870	0						
GCA_033044235.1_PDT001953783.1_genomic.fna	Salmonella_enterica	0.5214	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJHQ010000001.1 Salmonella enterica strain PNUSAS394567 SAMN37983937-rid19953703.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJHQ010000025.1 Salmonella enterica strain PNUSAS394567 SAMN37983937-rid19953703.guided.18, whole genome shotgun sequence	4970..5407	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJHQ010000017.1 Salmonella enterica strain PNUSAS394567 SAMN37983937-rid19953703.denovo.17, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABOJHQ010000019.1 Salmonella enterica strain PNUSAS394567 SAMN37983937-rid19953703.denovo.21, whole genome shotgun sequence	3392..3653																																																avrA	ABOJHQ010000002.1	553648..554517	99.54	870	0						
GCA_033044255.1_PDT001953784.1_genomic.fna	Salmonella_enterica	0.5208	592.885 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOJHO010000001.1 Salmonella enterica strain PNUSAS395671 SAMN37983925-rid19952133.denovo.01, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOJHO010000026.1 Salmonella enterica strain PNUSAS395671 SAMN37983925-rid19952133.guided.15, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOJHO010000013.1 Salmonella enterica strain PNUSAS395671 SAMN37983925-rid19952133.denovo.14, whole genome shotgun sequence	34930..35463																																																						avrA	ABOJHO010000003.1	496812..497680	99.425	870	0						
GCA_033044275.1_PDT001953782.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJHP010000001.1 Salmonella enterica strain PNUSAS394566 SAMN37984253-rid19953693.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJHP010000028.1 Salmonella enterica strain PNUSAS394566 SAMN37984253-rid19953693.guided.23, whole genome shotgun sequence	2234..2671	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJHP010000016.1 Salmonella enterica strain PNUSAS394566 SAMN37984253-rid19953693.denovo.16, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOJHP010000019.1 Salmonella enterica strain PNUSAS394566 SAMN37984253-rid19953693.denovo.20, whole genome shotgun sequence	3402..3663																																																avrA	ABOJHP010000002.1	553636..554505	99.54	870	0						
GCA_033044295.1_PDT001953781.1_genomic.fna	Salmonella_enterica	0.5215	342.138 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJHR010000002.1 Salmonella enterica strain PNUSAS394559 SAMN37984250-rid19953683.denovo.02, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJHR010000032.1 Salmonella enterica strain PNUSAS394559 SAMN37984250-rid19953683.guided.22, whole genome shotgun sequence	5637..6074	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJHR010000020.1 Salmonella enterica strain PNUSAS394559 SAMN37984250-rid19953683.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOJHR010000026.1 Salmonella enterica strain PNUSAS394559 SAMN37984250-rid19953683.denovo.28, whole genome shotgun sequence	439..700																																																avrA	ABOJHR010000001.1	553424..554293	99.54	870	0						
GCA_033044315.1_PDT001953779.1_genomic.fna	Salmonella_enterica	0.5208	244.985 KB	8	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJHT010000018.1 Salmonella enterica strain PNUSAS395670 SAMN37983920-rid19952123.denovo.18, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJHT010000056.1 Salmonella enterica strain PNUSAS395670 SAMN37983920-rid19952123.guided.32, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJHT010000001.1	126672..127540	99.31	870	0						
GCA_033044335.1_PDT001953780.1_genomic.fna	Salmonella_enterica	0.5218	416.621 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJHS010000001.1 Salmonella enterica strain PNUSAS395654 SAMN37983917-rid19954023.denovo.01, whole genome shotgun sequence	790293..790730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJHS010000025.1 Salmonella enterica strain PNUSAS395654 SAMN37983917-rid19954023.guided.12, whole genome shotgun sequence	36683..37120	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJHS010000002.1	94005..94874	98.966	870	0						
GCA_033044355.1_PDT001953777.1_genomic.fna	Salmonella_enterica	0.5232	374.319 KB	4	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOJHV010000001.1 Salmonella enterica strain PNUSAS394564 SAMN37983936-rid19953663.denovo.01, whole genome shotgun sequence	789377..789814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJHV010000027.1 Salmonella enterica strain PNUSAS394564 SAMN37983936-rid19953663.guided.20, whole genome shotgun sequence	5199..5636	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJHV010000002.1	406256..407124	99.425	870	0						
GCA_033044375.1_PDT001953778.1_genomic.fna	Salmonella_enterica	0.5214	406.794 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJHU010000001.1 Salmonella enterica strain PNUSAS394563 SAMN37984254-rid19953673.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJHU010000024.1 Salmonella enterica strain PNUSAS394563 SAMN37984254-rid19953673.guided.17, whole genome shotgun sequence	14499..14936	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJHU010000017.1 Salmonella enterica strain PNUSAS394563 SAMN37984254-rid19953673.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOJHU010000019.1 Salmonella enterica strain PNUSAS394563 SAMN37984254-rid19953673.denovo.21, whole genome shotgun sequence	3404..3665																																																avrA	ABOJHU010000002.1	553636..554505	99.54	870	0						
GCA_033044395.1_PDT001953776.1_genomic.fna	Salmonella_enterica	0.52	701.911 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJHW010000001.1 Salmonella enterica strain PNUSAS395649 SAMN37983919-rid19953653.denovo.01, whole genome shotgun sequence	262868..263305	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJHW010000019.1 Salmonella enterica strain PNUSAS395649 SAMN37983919-rid19953653.guided.09, whole genome shotgun sequence	42442..42879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJHW010000004.1	560992..561862	99.656	871	0						
GCA_033044415.1_PDT001953774.1_genomic.fna	Salmonella_enterica	0.5206	260.231 KB	7	aroC_92,dnaN_107,hemD_79,hisD_156,purE_64,sucA_151,thrA_87	469	7:f,g:-	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(B),tet(B)	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_92	dnaN	100	100	dnaN_107	hemD	100	100	hemD_79	hisD	100	100	hisD_156	purE	100	100	purE_64	sucA	100	100	sucA_151	thrA	100	100	thrA_87	7	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Rissen		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOJHY010000009.1 Salmonella enterica strain PNUSAS394570 SAMN37983938-rid19952113.denovo.09, whole genome shotgun sequence	157452..157889	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOJHY010000048.1 Salmonella enterica strain PNUSAS394570 SAMN37983938-rid19952113.guided.30, whole genome shotgun sequence	4419..4856	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOJHY010000034.1 Salmonella enterica strain PNUSAS394570 SAMN37983938-rid19952113.denovo.38, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOJHY010000051.1 Salmonella enterica strain PNUSAS394570 SAMN37983938-rid19952113.guided.40, whole genome shotgun sequence	513..1157	Ciprofloxacin	EU432277	tet(B)	100	1206/1206	ABOJHY010000018.1 Salmonella enterica strain PNUSAS394570 SAMN37983938-rid19952113.denovo.18, whole genome shotgun sequence	65917..67122	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJHY010000047.1 Salmonella enterica strain PNUSAS394570 SAMN37983938-rid19952113.guided.29, whole genome shotgun sequence	2293..3498	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOJHY010000032.1 Salmonella enterica strain PNUSAS394570 SAMN37983938-rid19952113.denovo.36, whole genome shotgun sequence	557..687	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJHY010000034.1 Salmonella enterica strain PNUSAS394570 SAMN37983938-rid19952113.denovo.38, whole genome shotgun sequence	1522..1652		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJHY010000018.1 Salmonella enterica strain PNUSAS394570 SAMN37983938-rid19952113.denovo.18, whole genome shotgun sequence	73508..73649																																									avrA	ABOJHY010000004.1	131947..132816	99.195	870	0						
GCA_033044435.1_PDT001953775.1_genomic.fna	Salmonella_enterica	0.5213	394.338 KB	3	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJHX010000001.1 Salmonella enterica strain PNUSAS394565 SAMN37984255-rid19953643.denovo.01, whole genome shotgun sequence	482802..483239	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJHX010000032.1 Salmonella enterica strain PNUSAS394565 SAMN37984255-rid19953643.guided.26, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJHX010000002.1	145172..146041	99.31	870	0						
GCA_033044455.1_PDT001953773.1_genomic.fna	Salmonella_enterica	0.5223	367.997 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI(Gamma)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJID010000001.1 Salmonella enterica strain PNUSAS395653 SAMN37983934-rid19953633.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJID010000035.1 Salmonella enterica strain PNUSAS395653 SAMN37983934-rid19953633.guided.13, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI(Gamma)	90.52	116 / 141	ABOJID010000014.1 Salmonella enterica strain PNUSAS395653 SAMN37983934-rid19953633.denovo.15, whole genome shotgun sequence	17019..17133																																																						avrA	ABOJID010000002.1	150017..150886	99.655	870	0						
GCA_033044475.1_PDT001953772.1_genomic.fna	Salmonella_enterica	0.5211	321.219 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJHZ010000002.1 Salmonella enterica strain PNUSAS395669 SAMN37983923-rid19953623.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJHZ010000045.1 Salmonella enterica strain PNUSAS395669 SAMN37983923-rid19953623.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOJHZ010000015.1 Salmonella enterica strain PNUSAS395669 SAMN37983923-rid19953623.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOJHZ010000015.1 Salmonella enterica strain PNUSAS395669 SAMN37983923-rid19953623.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABOJHZ010000001.1	401213..402081	100	869	0						
GCA_033044495.1_PDT001953771.1_genomic.fna	Salmonella_enterica	0.5206	365.107 KB	6	aroC_13,dnaN_127,hemD_506,hisD_113,purE_114,sucA_107,thrA_4	3095	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_506	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJIC010000002.1 Salmonella enterica strain PNUSAS395657 SAMN37983914-rid19953613.denovo.02, whole genome shotgun sequence	396032..396469	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJIC010000033.1 Salmonella enterica strain PNUSAS395657 SAMN37983914-rid19953613.guided.21, whole genome shotgun sequence	16441..16878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJIC010000009.1	140447..141316	99.425	870	0						
GCA_033044515.1_PDT001953769.1_genomic.fna	Salmonella_enterica	0.5231	309.984 KB	4	aroC_140,dnaN_105,hemD_85,hisD_93,purE_14,sucA_10,thrA_3	440	35:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_140	dnaN	100	100	dnaN_105	hemD	100	100	hemD_85	hisD	100	100	hisD_93	purE	100	100	purE_14	sucA	100	100	sucA_10	thrA	100	100	thrA_3	35	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Adelaide		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJIB010000001.1 Salmonella enterica strain PNUSAS394560 SAMN37984249-rid19952103.denovo.01, whole genome shotgun sequence	477515..477952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJIB010000032.1 Salmonella enterica strain PNUSAS394560 SAMN37984249-rid19952103.guided.21, whole genome shotgun sequence	15826..16263	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOJIB010000026.1 Salmonella enterica strain PNUSAS394560 SAMN37984249-rid19952103.denovo.29, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOJIB010000035.1 Salmonella enterica strain PNUSAS394560 SAMN37984249-rid19952103.guided.31, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOJIB010000025.1 Salmonella enterica strain PNUSAS394560 SAMN37984249-rid19952103.denovo.28, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJIB010000026.1 Salmonella enterica strain PNUSAS394560 SAMN37984249-rid19952103.denovo.29, whole genome shotgun sequence	1150..1280		enterobacteriales	Col(pHAD28)	92.5	120 / 131	ABOJIB010000027.1 Salmonella enterica strain PNUSAS394560 SAMN37984249-rid19952103.denovo.30, whole genome shotgun sequence	1958..2077																																																				
GCA_033044535.1_PDT001953770.1_genomic.fna	Salmonella_enterica	0.5211	735.976 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJIA010000001.1 Salmonella enterica strain PNUSAS395677 SAMN37983930-rid19954013.denovo.01, whole genome shotgun sequence	644886..645323	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJIA010000017.1 Salmonella enterica strain PNUSAS395677 SAMN37983930-rid19954013.guided.09, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJIA010000003.1	561816..562684	99.655	870	0						
GCA_033044555.1_PDT001953768.1_genomic.fna	Salmonella_enterica	0.5213	236.954 KB	8	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJIE010000009.1 Salmonella enterica strain PNUSAS395674 SAMN37983918-rid19953603.denovo.09, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJIE010000035.1 Salmonella enterica strain PNUSAS395674 SAMN37983918-rid19953603.guided.19, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJIE010000001.1	178607..179475	99.31	870	0						
GCA_033044575.1_PDT001953767.1_genomic.fna	Salmonella_enterica	0.5206	279.77 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	13	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cml,floR,cmlA1,sul2,sul2,sul2,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(B),tet(B),tet(M),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJIF010000001.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOJIF010000032.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.34, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOJIF010000032.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.34, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOJIF010000053.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.64, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJIF010000053.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.64, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOJIF010000061.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.31, whole genome shotgun sequence	19562..19999	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOJIF010000066.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.41, whole genome shotgun sequence	5791..6582	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOJIF010000068.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.45, whole genome shotgun sequence	1110..1901	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOJIF010000071.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.63, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJIF010000071.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.63, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOJIF010000050.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.60, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOJIF010000072.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.65, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOJIF010000032.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.34, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOJIF010000038.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.46, whole genome shotgun sequence	1097..2310	Chloramphenicol, Florfenicol	AF118107	cml	96.66	929/909	ABOJIF010000068.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.45, whole genome shotgun sequence	170..1091	Chloramphenicol	M22614	floR	98.11	1214/1215	ABOJIF010000069.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.55, whole genome shotgun sequence	864..2077	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOJIF010000070.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.57, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	sul2	100	770/816	ABOJIF010000047.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.56, whole genome shotgun sequence	1..770	Sulfamethoxazole	AB366440	sul2	100	770/816	ABOJIF010000047.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.56, whole genome shotgun sequence	1..770	Sulfamethoxazole	FN995456	sul2	100	770/816	ABOJIF010000047.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.56, whole genome shotgun sequence	1..770	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOJIF010000073.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.68, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	99.88	816/816	ABOJIF010000074.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.69, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOJIF010000075.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.70, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	100	816/816	ABOJIF010000076.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.71, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOJIF010000031.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.33, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOJIF010000032.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.34, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	99.92	1206/1206	ABOJIF010000064.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.37, whole genome shotgun sequence	9632..10837	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJIF010000065.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.38, whole genome shotgun sequence	9632..10837	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOJIF010000067.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.44, whole genome shotgun sequence	873..2792	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABOJIF010000032.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.34, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABOJIF010000066.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.guided.41, whole genome shotgun sequence	4886..5383	Trimethoprim	AM040708																																																																																																																																																																																																																																																																			enterobacteriales	Col156	94.81	154 / 154	ABOJIF010000036.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.42, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABOJIF010000043.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.51, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABOJIF010000052.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.62, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOJIF010000028.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.28, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOJIF010000022.1 Salmonella enterica strain PNUSAS394562 SAMN37984247-rid19953593.denovo.22, whole genome shotgun sequence	55562..56058																											avrA	ABOJIF010000002.1	508765..509634	99.885	870	0						
GCA_033044595.1_PDT001953766.1_genomic.fna	Salmonella_enterica	0.5217	441.754 KB	5	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12*,thrA_17	50*	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	99.8003992015968	100	sucA_12*	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJIG010000002.1 Salmonella enterica strain PNUSAS395678 SAMN37983931-rid19953583.denovo.02, whole genome shotgun sequence	145426..145863	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJIG010000032.1 Salmonella enterica strain PNUSAS395678 SAMN37983931-rid19953583.guided.20, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJIG010000005.1	401403..402272	99.655	870	0						
GCA_033044615.1_PDT001953765.1_genomic.fna	Salmonella_enterica	0.5212	480.249 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJIH010000001.1 Salmonella enterica strain PNUSAS394561 SAMN37984248-rid19953573.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJIH010000029.1 Salmonella enterica strain PNUSAS394561 SAMN37984248-rid19953573.guided.24, whole genome shotgun sequence	1062..1499	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJIH010000019.1 Salmonella enterica strain PNUSAS394561 SAMN37984248-rid19953573.denovo.20, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOJIH010000020.1 Salmonella enterica strain PNUSAS394561 SAMN37984248-rid19953573.denovo.21, whole genome shotgun sequence	3413..3674																																																avrA	ABOJIH010000002.1	553432..554301	99.54	870	0						
GCA_033044635.1_PDT001953763.1_genomic.fna	Salmonella_enterica	0.5212	382.233 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJII010000001.1 Salmonella enterica strain PNUSAS394619 SAMN37984246-rid19953563.denovo.01, whole genome shotgun sequence	477714..478151	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJII010000042.1 Salmonella enterica strain PNUSAS394619 SAMN37984246-rid19953563.guided.29, whole genome shotgun sequence	2488..2925	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOJII010000014.1 Salmonella enterica strain PNUSAS394619 SAMN37984246-rid19953563.denovo.14, whole genome shotgun sequence	67779..67920																																																						avrA	ABOJII010000002.1	145172..146041	99.31	870	0						
GCA_033044655.1_PDT001953764.1_genomic.fna	Salmonella_enterica	0.5226	263.347 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJIL010000001.1 Salmonella enterica strain PNUSAS395656 SAMN37983927-rid19952093.denovo.01, whole genome shotgun sequence	622353..622790	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJIL010000033.1 Salmonella enterica strain PNUSAS395656 SAMN37983927-rid19952093.guided.20, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJIL010000002.1	149551..150420	99.655	870	0						
GCA_033044675.1_PDT001953762.1_genomic.fna	Salmonella_enterica	0.5219	406.124 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJIK010000001.1 Salmonella enterica strain PNUSAS395676 SAMN37983915-rid19953553.denovo.01, whole genome shotgun sequence	573962..574399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJIK010000033.1 Salmonella enterica strain PNUSAS395676 SAMN37983915-rid19953553.guided.17, whole genome shotgun sequence	1620..2057	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJIK010000004.1	39534..40403	99.655	870	0						
GCA_033044695.1_PDT001953761.1_genomic.fna	Salmonella_enterica	0.5221	342.65 KB	5	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJIJ010000007.1 Salmonella enterica strain PNUSAS395650 SAMN37983928-rid19953543.denovo.07, whole genome shotgun sequence	153902..154339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJIJ010000029.1 Salmonella enterica strain PNUSAS395650 SAMN37983928-rid19953543.guided.15, whole genome shotgun sequence	42396..42833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033044715.1_PDT001953760.1_genomic.fna	Salmonella_enterica	0.521	407.429 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJIM010000001.1 Salmonella enterica strain PNUSAS395651 SAMN37983929-rid19953533.denovo.01, whole genome shotgun sequence	558157..558594	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJIM010000039.1 Salmonella enterica strain PNUSAS395651 SAMN37983929-rid19953533.guided.16, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJIM010000010.1	94901..95769	99.195	870	0						
GCA_033044735.1_PDT001953758.1_genomic.fna	Salmonella_enterica	0.5205	490.113 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJIO010000001.1 Salmonella enterica strain PNUSAS395453 SAMN37983652-rid19953523.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJIO010000024.1 Salmonella enterica strain PNUSAS395453 SAMN37983652-rid19953523.guided.15, whole genome shotgun sequence	26625..27062	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJIO010000012.1 Salmonella enterica strain PNUSAS395453 SAMN37983652-rid19953523.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOJIO010000016.1 Salmonella enterica strain PNUSAS395453 SAMN37983652-rid19953523.denovo.18, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.93	374 / 374	ABOJIO010000013.1 Salmonella enterica strain PNUSAS395453 SAMN37983652-rid19953523.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABOJIO010000002.1	553690..554559	99.54	870	0						
GCA_033044755.1_PDT001953755.1_genomic.fna	Salmonella_enterica	0.5212	729.341 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJIS010000001.1 Salmonella enterica strain PNUSAS395588 SAMN37982746-rid19953493.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJIS010000021.1 Salmonella enterica strain PNUSAS395588 SAMN37982746-rid19953493.guided.13, whole genome shotgun sequence	32788..33225	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJIS010000011.1 Salmonella enterica strain PNUSAS395588 SAMN37982746-rid19953493.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOJIS010000011.1 Salmonella enterica strain PNUSAS395588 SAMN37982746-rid19953493.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABOJIS010000003.1	553636..554505	99.54	870	0						
GCA_033044765.1_PDT001953759.1_genomic.fna	Salmonella_enterica	0.5199	429.953 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJIN010000001.1 Salmonella enterica strain PNUSAS395668 SAMN37983932-rid19952083.denovo.01, whole genome shotgun sequence	562114..562551	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJIN010000025.1 Salmonella enterica strain PNUSAS395668 SAMN37983932-rid19952083.guided.17, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJIN010000010.1	157329..158197	99.195	870	0						
GCA_033044795.1_PDT001953809.1_genomic.fna	Salmonella_enterica	0.5163	55.548 KB	31	aroC_111,dnaN_109,hemD_8,hisD_120,purE_117,sucA_45,thrA_4	357	6,14:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_109	hemD	100	100	hemD_8	hisD	100	100	hisD_120	purE	100	100	purE_117	sucA	100	100	sucA_45	thrA	100	100	thrA_4	6,14	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Florida		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOJIR010000029.1 Salmonella enterica strain PNUSAS395692 SAMN37984282-rid19952213.denovo.029, whole genome shotgun sequence	11351..11788	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOJIR010000269.1 Salmonella enterica strain PNUSAS395692 SAMN37984282-rid19952213.guided.170, whole genome shotgun sequence	3559..3996	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033044815.1_PDT001953757.1_genomic.fna	Salmonella_enterica	0.5211	283.778 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJIT010000001.1 Salmonella enterica strain PNUSAS395431 SAMN37982761-rid19953513.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJIT010000040.1 Salmonella enterica strain PNUSAS395431 SAMN37982761-rid19953513.guided.33, whole genome shotgun sequence	2806..3243	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOJIT010000031.1 Salmonella enterica strain PNUSAS395431 SAMN37982761-rid19953513.denovo.35, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOJIT010000041.1 Salmonella enterica strain PNUSAS395431 SAMN37982761-rid19953513.guided.34, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJIT010000031.1 Salmonella enterica strain PNUSAS395431 SAMN37982761-rid19953513.denovo.35, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJIT010000041.1 Salmonella enterica strain PNUSAS395431 SAMN37982761-rid19953513.guided.34, whole genome shotgun sequence	2416..2546																																																avrA	ABOJIT010000002.1	540747..541616	99.885	870	0						
GCA_033044835.1_PDT001953753.1_genomic.fna	Salmonella_enterica	0.5215	682.831 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOJIP010000001.1 Salmonella enterica strain PNUSAS395439 SAMN37983672-rid19953483.denovo.01, whole genome shotgun sequence	596592..597029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOJIP010000021.1 Salmonella enterica strain PNUSAS395439 SAMN37983672-rid19953483.guided.11, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJIP010000004.1	544606..545474	99.425	870	0						
GCA_033044855.1_PDT001953751.1_genomic.fna	Salmonella_enterica	0.5195	180.306 KB	8	aroC_188,dnaN_199,hemD_21,hisD_62,purE_36,sucA_39,thrA_190	735	8:z4,z32:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_188	dnaN	100	100	dnaN_199	hemD	100	100	hemD_21	hisD	100	100	hisD_62	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_190	8	z4,z32	-	Salmonella enterica subspecies enterica (subspecies I)	Tallahassee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJIQ010000002.1 Salmonella enterica strain PNUSAS395434 SAMN37983664-rid19953463.denovo.02, whole genome shotgun sequence	42613..43050	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJIQ010000059.1 Salmonella enterica strain PNUSAS395434 SAMN37983664-rid19953463.guided.33, whole genome shotgun sequence	9994..10431	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOJIQ010000026.1 Salmonella enterica strain PNUSAS395434 SAMN37983664-rid19953463.denovo.26, whole genome shotgun sequence	7673..8206																																																						avrA	ABOJIQ010000009.1	93829..94698	99.655	870	0						
GCA_033044875.1_PDT001953746.1_genomic.fna	Salmonella_enterica	0.5217	332.877 KB	6	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOJIU010000004.1 Salmonella enterica strain PNUSAS395593 SAMN37982737-rid19953423.denovo.04, whole genome shotgun sequence	213341..213778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOJIU010000059.1 Salmonella enterica strain PNUSAS395593 SAMN37982737-rid19953423.guided.51, whole genome shotgun sequence	402..839	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOJIU010000060.1 Salmonella enterica strain PNUSAS395593 SAMN37982737-rid19953423.guided.52, whole genome shotgun sequence	402..839	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033044895.1_PDT001953743.1_genomic.fna	Salmonella_enterica	0.5222	354.932 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOJIV010000001.1 Salmonella enterica strain PNUSAS395583 SAMN37982740-rid19954003.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJIV010000040.1 Salmonella enterica strain PNUSAS395583 SAMN37982740-rid19954003.guided.20, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOJIV010000023.1 Salmonella enterica strain PNUSAS395583 SAMN37982740-rid19954003.denovo.26, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABOJIV010000025.1 Salmonella enterica strain PNUSAS395583 SAMN37982740-rid19954003.denovo.28, whole genome shotgun sequence	2528..2639																																																avrA	ABOJIV010000009.1	94027..94895	99.425	870	0						
GCA_033044915.1_PDT001953737.1_genomic.fna	Salmonella_enterica	0.5213	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJIZ010000001.1 Salmonella enterica strain PNUSAS395586 SAMN37982750-rid19953363.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJIZ010000023.1 Salmonella enterica strain PNUSAS395586 SAMN37982750-rid19953363.guided.14, whole genome shotgun sequence	25657..26094	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJIZ010000012.1 Salmonella enterica strain PNUSAS395586 SAMN37982750-rid19953363.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOJIZ010000012.1 Salmonella enterica strain PNUSAS395586 SAMN37982750-rid19953363.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABOJIZ010000002.1	553636..554505	99.54	870	0						
GCA_033044935.1_PDT001953741.1_genomic.fna	Salmonella_enterica	0.5213	278.995 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_112,sucA_9,thrA_2	313	4:i:1,2	1	aac(6')-Iaa	0		3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_112	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJIW010000001.1 Salmonella enterica strain PNUSAS395430 SAMN37983659-rid19953393.denovo.01, whole genome shotgun sequence	396922..397359	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	Col440I	94.74	114 / 114	ABOJIW010000035.1 Salmonella enterica strain PNUSAS395430 SAMN37983659-rid19953393.denovo.37, whole genome shotgun sequence	337..450	enterobacteriales	IncFIB(S)	100	643 / 643	ABOJIW010000015.1 Salmonella enterica strain PNUSAS395430 SAMN37983659-rid19953393.denovo.15, whole genome shotgun sequence	48450..49092		enterobacteriales	IncFII(S)	100	262 / 262	ABOJIW010000015.1 Salmonella enterica strain PNUSAS395430 SAMN37983659-rid19953393.denovo.15, whole genome shotgun sequence	64178..64439																																									avrA	ABOJIW010000005.1	174466..175335	99.885	870	0						
GCA_033044955.1_PDT001953738.1_genomic.fna	Salmonella_enterica	0.5218	577.285 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOJIY010000001.1 Salmonella enterica strain PNUSAS395445 SAMN37982767-rid19953373.denovo.01, whole genome shotgun sequence	639283..639720	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOJIY010000034.1 Salmonella enterica strain PNUSAS395445 SAMN37982767-rid19953373.guided.12, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJIY010000002.1	499231..500099	99.425	870	0						
GCA_033044975.1_PDT001953739.1_genomic.fna	Salmonella_enterica	0.5217	521.585 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOJIX010000001.1 Salmonella enterica strain PNUSAS395568 SAMN37982728-rid19952043.denovo.01, whole genome shotgun sequence	814929..815366	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOJIX010000029.1 Salmonella enterica strain PNUSAS395568 SAMN37982728-rid19952043.guided.20, whole genome shotgun sequence	571..1008	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOJIX010000018.1 Salmonella enterica strain PNUSAS395568 SAMN37982728-rid19952043.denovo.21, whole genome shotgun sequence	239..369																																																						avrA	ABOJIX010000006.1	140114..140983	99.425	870	0						
GCA_033044995.1_PDT001953735.1_genomic.fna	Salmonella_enterica	0.5212	492.603 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJJB010000001.1 Salmonella enterica strain PNUSAS395579 SAMN37982739-rid19953993.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJJB010000024.1 Salmonella enterica strain PNUSAS395579 SAMN37982739-rid19953993.guided.16, whole genome shotgun sequence	10914..11351	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJJB010000012.1 Salmonella enterica strain PNUSAS395579 SAMN37982739-rid19953993.denovo.13, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABOJJB010000015.1 Salmonella enterica strain PNUSAS395579 SAMN37982739-rid19953993.denovo.18, whole genome shotgun sequence	3395..3656																																																avrA	ABOJJB010000002.1	553499..554368	99.54	870	0						
GCA_033045015.1_PDT001953736.1_genomic.fna	Salmonella_enterica	0.5208	421.782 KB	5	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOJJA010000001.1 Salmonella enterica strain PNUSAS395441 SAMN37983669-rid19953353.denovo.01, whole genome shotgun sequence	346963..347400	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOJJA010000029.1 Salmonella enterica strain PNUSAS395441 SAMN37983669-rid19953353.guided.17, whole genome shotgun sequence	16434..16871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJJA010000008.1	150990..151859	99.54	870	0						
GCA_033045035.1_PDT001953732.1_genomic.fna	Salmonella_enterica	0.5219	380.132 KB	5	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOJJE010000001.1 Salmonella enterica strain PNUSAS395566 SAMN37982756-rid19953333.denovo.01, whole genome shotgun sequence	750480..750917	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJJE010000029.1 Salmonella enterica strain PNUSAS395566 SAMN37982756-rid19953333.guided.23, whole genome shotgun sequence	5818..6255	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOJJE010000016.1 Salmonella enterica strain PNUSAS395566 SAMN37982756-rid19953333.denovo.16, whole genome shotgun sequence	34958..35491																																																						avrA	ABOJJE010000007.1	174276..175144	99.425	870	0						
GCA_033045055.1_PDT001953734.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJJC010000001.1 Salmonella enterica strain PNUSAS395582 SAMN37982734-rid19952033.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJJC010000025.1 Salmonella enterica strain PNUSAS395582 SAMN37982734-rid19952033.guided.14, whole genome shotgun sequence	43645..44082	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJJC010000012.1 Salmonella enterica strain PNUSAS395582 SAMN37982734-rid19952033.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOJJC010000016.1 Salmonella enterica strain PNUSAS395582 SAMN37982734-rid19952033.denovo.19, whole genome shotgun sequence	3395..3656																																																avrA	ABOJJC010000002.1	553635..554504	99.54	870	0						
GCA_033045075.1_PDT001953733.1_genomic.fna	Salmonella_enterica	0.5215	761.787 KB	2	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJJD010000001.1 Salmonella enterica strain PNUSAS395573 SAMN37982755-rid19953343.denovo.01, whole genome shotgun sequence	1370965..1371402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJJD010000018.1 Salmonella enterica strain PNUSAS395573 SAMN37982755-rid19953343.guided.12, whole genome shotgun sequence	13395..13832	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJJD010000004.1	151321..152190	99.77	870	0						
GCA_033045095.1_PDT001953731.1_genomic.fna	Salmonella_enterica	0.5215	639.828 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOJJF010000002.1 Salmonella enterica strain PNUSAS395443 SAMN37982764-rid19953323.denovo.02, whole genome shotgun sequence	46768..47205	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOJJF010000021.1 Salmonella enterica strain PNUSAS395443 SAMN37982764-rid19953323.guided.13, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJJF010000004.1	544607..545475	99.425	870	0						
GCA_033045115.1_PDT001953730.1_genomic.fna	Salmonella_enterica	0.5199	594.329 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOJJG010000001.1 Salmonella enterica strain PNUSAS395436 SAMN37982766-rid19953313.denovo.01, whole genome shotgun sequence	639468..639905	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOJJG010000041.1 Salmonella enterica strain PNUSAS395436 SAMN37982766-rid19953313.guided.10, whole genome shotgun sequence	17238..17675	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	98.44	320 / 316	ABOJJG010000011.1 Salmonella enterica strain PNUSAS395436 SAMN37982766-rid19953313.denovo.13, whole genome shotgun sequence	26501..26820																																																						avrA	ABOJJG010000003.1	499102..499970	99.425	870	0						
GCA_033045135.1_PDT001953728.1_genomic.fna	Salmonella_enterica	0.5213	489.888 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJJI010000001.1 Salmonella enterica strain PNUSAS395585 SAMN37982731-rid19953303.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJJI010000024.1 Salmonella enterica strain PNUSAS395585 SAMN37982731-rid19953303.guided.19, whole genome shotgun sequence	53..490	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJJI010000012.1 Salmonella enterica strain PNUSAS395585 SAMN37982731-rid19953303.denovo.13, whole genome shotgun sequence	49284..49926	enterobacteriales	IncFII(S)	100	262 / 262	ABOJJI010000012.1 Salmonella enterica strain PNUSAS395585 SAMN37982731-rid19953303.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABOJJI010000002.1	553636..554505	99.54	870	0						
GCA_033045145.1_PDT001953729.1_genomic.fna	Salmonella_enterica	0.5206	655.936 KB	3	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJJH010000001.1 Salmonella enterica strain PNUSAS395427 SAMN37983666-rid19952023.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJJH010000045.1 Salmonella enterica strain PNUSAS395427 SAMN37983666-rid19952023.guided.17, whole genome shotgun sequence	23361..23798	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJJH010000003.1	504273..505143	99.196	871	0						
GCA_033045175.1_PDT001953727.1_genomic.fna	Salmonella_enterica	0.5215	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJJJ010000001.1 Salmonella enterica strain PNUSAS395449 SAMN37983662-rid19953293.denovo.01, whole genome shotgun sequence	773788..774225	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJJJ010000023.1 Salmonella enterica strain PNUSAS395449 SAMN37983662-rid19953293.guided.19, whole genome shotgun sequence	1228..1665	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJJJ010000012.1 Salmonella enterica strain PNUSAS395449 SAMN37983662-rid19953293.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOJJJ010000015.1 Salmonella enterica strain PNUSAS395449 SAMN37983662-rid19953293.denovo.17, whole genome shotgun sequence	3391..3652																																																avrA	ABOJJJ010000002.1	553642..554511	99.54	870	0						
GCA_033045195.1_PDT001953726.1_genomic.fna	Salmonella_enterica	0.522	761.836 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	6	aac(6')-Iaa,aac(6')-Iaa,mph(A),mph(A),floR,floR,floR,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJJK010000001.1 Salmonella enterica strain PNUSAS395574 SAMN37982742-rid19953283.denovo.01, whole genome shotgun sequence	638994..639431	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJJK010000028.1 Salmonella enterica strain PNUSAS395574 SAMN37982742-rid19953283.guided.11, whole genome shotgun sequence	17297..17734	Amikacin, Tobramycin	NC_003197	mph(A)	99.89	906/906	ABOJJK010000014.1 Salmonella enterica strain PNUSAS395574 SAMN37982742-rid19953283.denovo.16, whole genome shotgun sequence	68..973	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOJJK010000030.1 Salmonella enterica strain PNUSAS395574 SAMN37982742-rid19953283.guided.23, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOJJK010000014.1 Salmonella enterica strain PNUSAS395574 SAMN37982742-rid19953283.denovo.16, whole genome shotgun sequence	11674..12887	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABOJJK010000032.1 Salmonella enterica strain PNUSAS395574 SAMN37982742-rid19953283.guided.26, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOJJK010000033.1 Salmonella enterica strain PNUSAS395574 SAMN37982742-rid19953283.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOJJK010000014.1 Salmonella enterica strain PNUSAS395574 SAMN37982742-rid19953283.denovo.16, whole genome shotgun sequence	6284..7123	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJJK010000031.1 Salmonella enterica strain PNUSAS395574 SAMN37982742-rid19953283.guided.25, whole genome shotgun sequence	3301..4140	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOJJK010000014.1 Salmonella enterica strain PNUSAS395574 SAMN37982742-rid19953283.denovo.16, whole genome shotgun sequence	9799..11073	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOJJK010000034.1 Salmonella enterica strain PNUSAS395574 SAMN37982742-rid19953283.guided.28, whole genome shotgun sequence	2510..3784	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOJJK010000014.1 Salmonella enterica strain PNUSAS395574 SAMN37982742-rid19953283.denovo.16, whole genome shotgun sequence	8168..8641	Trimethoprim	X00926	dfrA1	100	474/474	ABOJJK010000031.1 Salmonella enterica strain PNUSAS395574 SAMN37982742-rid19953283.guided.25, whole genome shotgun sequence	1783..2256	Trimethoprim	X00926	dfrA1	100	474/474	ABOJJK010000034.1 Salmonella enterica strain PNUSAS395574 SAMN37982742-rid19953283.guided.28, whole genome shotgun sequence	879..1352	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOJJK010000015.1 Salmonella enterica strain PNUSAS395574 SAMN37982742-rid19953283.denovo.18, whole genome shotgun sequence	8485..8735																																																						avrA	ABOJJK010000002.1	586525..587394	99.77	870	0						
GCA_033045215.1_PDT001953725.1_genomic.fna	Salmonella_enterica	0.5219	723.691 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJJM010000001.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.denovo.01, whole genome shotgun sequence	172160..172597	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOJJM010000020.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.denovo.25, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOJJM010000032.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.guided.13, whole genome shotgun sequence	4048..4485	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOJJM010000035.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.guided.24, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOJJM010000020.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.denovo.25, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOJJM010000035.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.guided.24, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOJJM010000019.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.denovo.23, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOJJM010000034.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.guided.22, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOJJM010000018.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.denovo.21, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOJJM010000036.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOJJM010000020.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.denovo.25, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOJJM010000035.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.guided.24, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOJJM010000023.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.denovo.31, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJJM010000038.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.guided.30, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOJJM010000018.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.denovo.21, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOJJM010000037.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.guided.28, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOJJM010000018.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.denovo.21, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOJJM010000037.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.guided.28, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOJJM010000015.1 Salmonella enterica strain PNUSAS395580 SAMN37982753-rid19953273.denovo.18, whole genome shotgun sequence	4434..4684																																																						avrA	ABOJJM010000002.1	586519..587388	99.77	870	0						
GCA_033045235.1_PDT001953723.1_genomic.fna	Salmonella_enterica	0.5213	478.499 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJJN010000001.1 Salmonella enterica strain PNUSAS395590 SAMN37982736-rid19953983.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJJN010000027.1 Salmonella enterica strain PNUSAS395590 SAMN37982736-rid19953983.guided.21, whole genome shotgun sequence	2580..3017	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJJN010000012.1 Salmonella enterica strain PNUSAS395590 SAMN37982736-rid19953983.denovo.13, whole genome shotgun sequence	40523..41165	enterobacteriales	IncFII(S)	100	262 / 262	ABOJJN010000016.1 Salmonella enterica strain PNUSAS395590 SAMN37982736-rid19953983.denovo.18, whole genome shotgun sequence	3393..3654																																																avrA	ABOJJN010000002.1	553647..554516	99.54	870	0						
GCA_033045255.1_PDT001953724.1_genomic.fna	Salmonella_enterica	0.5225	393.277 KB	3	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJJL010000001.1 Salmonella enterica strain PNUSAS395426 SAMN37983667-rid19952013.denovo.01, whole genome shotgun sequence	169976..170413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJJL010000037.1 Salmonella enterica strain PNUSAS395426 SAMN37983667-rid19952013.guided.24, whole genome shotgun sequence	2106..2543	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033045275.1_PDT001953722.1_genomic.fna	Salmonella_enterica	0.5203	430.457 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJJO010000001.1 Salmonella enterica strain PNUSAS395451 SAMN37982760-rid19953263.denovo.01, whole genome shotgun sequence	384315..384752	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJJO010000037.1 Salmonella enterica strain PNUSAS395451 SAMN37982760-rid19953263.guided.25, whole genome shotgun sequence	781..1218	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJJO010000003.1	504140..505010	99.196	871	0						
GCA_033045295.1_PDT001953720.1_genomic.fna	Salmonella_enterica	0.521	279.776 KB	6	aroC_10,dnaN_19,hemD_363,hisD_9,purE_5,sucA_9,thrA_2	2379	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_363	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJJQ010000001.1 Salmonella enterica strain PNUSAS395577 SAMN37982745-rid19953243.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJJQ010000032.1 Salmonella enterica strain PNUSAS395577 SAMN37982745-rid19953243.denovo.36, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJJQ010000032.1 Salmonella enterica strain PNUSAS395577 SAMN37982745-rid19953243.denovo.36, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOJJQ010000050.1 Salmonella enterica strain PNUSAS395577 SAMN37982745-rid19953243.guided.33, whole genome shotgun sequence	6881..7318	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJJQ010000051.1 Salmonella enterica strain PNUSAS395577 SAMN37982745-rid19953243.guided.38, whole genome shotgun sequence	1986..2822	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJJQ010000051.1 Salmonella enterica strain PNUSAS395577 SAMN37982745-rid19953243.guided.38, whole genome shotgun sequence	1183..1986	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOJJQ010000036.1 Salmonella enterica strain PNUSAS395577 SAMN37982745-rid19953243.denovo.42, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOJJQ010000052.1 Salmonella enterica strain PNUSAS395577 SAMN37982745-rid19953243.guided.41, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOJJQ010000032.1 Salmonella enterica strain PNUSAS395577 SAMN37982745-rid19953243.denovo.36, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOJJQ010000051.1 Salmonella enterica strain PNUSAS395577 SAMN37982745-rid19953243.guided.38, whole genome shotgun sequence	307..1122	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOJJQ010000029.1 Salmonella enterica strain PNUSAS395577 SAMN37982745-rid19953243.denovo.30, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJJQ010000049.1 Salmonella enterica strain PNUSAS395577 SAMN37982745-rid19953243.guided.32, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABOJJQ010000002.1	540747..541616	99.885	870	0						
GCA_033045315.1_PDT001953721.1_genomic.fna	Salmonella_enterica	0.5201	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa	2	gyrA_p.S83F,parC_p.S80I	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOJJP010000010.1 Salmonella enterica strain PNUSAS395587 SAMN37982730-rid19953253.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_033045335.1_PDT001953719.1_genomic.fna	Salmonella_enterica	0.5176	391.742 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFII(pSE11),IncI1-I(Alpha),IncI2(Delta)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJJR010000001.1 Salmonella enterica strain PNUSAS395591 SAMN37982758-rid19952003.denovo.01, whole genome shotgun sequence	563827..564264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJJR010000043.1 Salmonella enterica strain PNUSAS395591 SAMN37982758-rid19952003.guided.15, whole genome shotgun sequence	6562..6999	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	97.73	264 / 264	ABOJJR010000025.1 Salmonella enterica strain PNUSAS395591 SAMN37982758-rid19952003.denovo.28, whole genome shotgun sequence	6279..6542	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJJR010000014.1 Salmonella enterica strain PNUSAS395591 SAMN37982758-rid19952003.denovo.14, whole genome shotgun sequence	68994..69135		enterobacteriales	IncI2(Delta)	98.42	316 / 316	ABOJJR010000017.1 Salmonella enterica strain PNUSAS395591 SAMN37982758-rid19952003.denovo.19, whole genome shotgun sequence	26088..26403																																									avrA	ABOJJR010000012.1	93870..94738	99.195	870	0						
GCA_033045355.1_PDT001953718.1_genomic.fna	Salmonella_enterica	0.5207	337.844 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col156,IncI1-I(Alpha)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJJS010000001.1 Salmonella enterica strain PNUSAS395442 SAMN37983671-rid19953233.denovo.01, whole genome shotgun sequence	772111..772548	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJJS010000050.1 Salmonella enterica strain PNUSAS395442 SAMN37983671-rid19953233.guided.20, whole genome shotgun sequence	10610..11047	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	ABOJJS010000028.1 Salmonella enterica strain PNUSAS395442 SAMN37983671-rid19953233.denovo.31, whole genome shotgun sequence	3280..3431	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJJS010000015.1 Salmonella enterica strain PNUSAS395442 SAMN37983671-rid19953233.denovo.15, whole genome shotgun sequence	70005..70146																																																avrA	ABOJJS010000003.1	94085..94954	99.195	870	0						
GCA_033045375.1_PDT001953716.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJJT010000001.1 Salmonella enterica strain PNUSAS395446 SAMN37983653-rid19953213.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJJT010000024.1 Salmonella enterica strain PNUSAS395446 SAMN37983653-rid19953213.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJJT010000012.1 Salmonella enterica strain PNUSAS395446 SAMN37983653-rid19953213.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOJJT010000016.1 Salmonella enterica strain PNUSAS395446 SAMN37983653-rid19953213.denovo.19, whole genome shotgun sequence	3403..3664																																																avrA	ABOJJT010000002.1	553636..554505	99.54	870	0						
GCA_033045395.1_PDT001953714.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJJW010000001.1 Salmonella enterica strain PNUSAS395572 SAMN37982743-rid19951993.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJJW010000022.1 Salmonella enterica strain PNUSAS395572 SAMN37982743-rid19951993.guided.13, whole genome shotgun sequence	42420..42857	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJJW010000011.1 Salmonella enterica strain PNUSAS395572 SAMN37982743-rid19951993.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOJJW010000011.1 Salmonella enterica strain PNUSAS395572 SAMN37982743-rid19951993.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABOJJW010000002.1	553636..554505	99.54	870	0						
GCA_033045415.1_PDT001953715.1_genomic.fna	Salmonella_enterica	0.5216	405.443 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(Yp)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJJV010000002.1 Salmonella enterica strain PNUSAS395425 SAMN37983661-rid19953203.denovo.02, whole genome shotgun sequence	414155..414592	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJJV010000030.1 Salmonella enterica strain PNUSAS395425 SAMN37983661-rid19953203.guided.23, whole genome shotgun sequence	771..1208	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	92.64	231 / 230	ABOJJV010000015.1 Salmonella enterica strain PNUSAS395425 SAMN37983661-rid19953203.denovo.15, whole genome shotgun sequence	31763..31991																																																						avrA	ABOJJV010000010.1	150736..151604	99.195	870	0						
GCA_033045435.1_PDT001953713.1_genomic.fna	Salmonella_enterica	0.5211	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJJX010000001.1 Salmonella enterica strain PNUSAS395596 SAMN37982752-rid19953973.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJJX010000024.1 Salmonella enterica strain PNUSAS395596 SAMN37982752-rid19953973.guided.16, whole genome shotgun sequence	24127..24564	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJJX010000012.1 Salmonella enterica strain PNUSAS395596 SAMN37982752-rid19953973.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOJJX010000016.1 Salmonella enterica strain PNUSAS395596 SAMN37982752-rid19953973.denovo.19, whole genome shotgun sequence	3378..3639																																																avrA	ABOJJX010000002.1	553635..554504	99.54	870	0						
GCA_033045455.1_PDT001953717.1_genomic.fna	Salmonella_enterica	0.5197	188.166 KB	10	aroC_41,dnaN_4,hemD_23,hisD_14,purE_16,sucA_19,thrA_18	74	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_4	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_19	thrA	100	100	thrA_18	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJJU010000003.1 Salmonella enterica strain PNUSAS395570 SAMN37982733-rid19953223.denovo.03, whole genome shotgun sequence	37880..38317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJJU010000057.1 Salmonella enterica strain PNUSAS395570 SAMN37982733-rid19953223.guided.29, whole genome shotgun sequence	7822..8259	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJJU010000004.1	146753..147621	99.425	870	0						
GCA_033045475.1_PDT001953711.1_genomic.fna	Salmonella_enterica	0.5225	212.285 KB	9	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(SARC14),IncFII(Yp)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJJZ010000010.1 Salmonella enterica strain PNUSAS395452 SAMN37982763-rid19953183.denovo.10, whole genome shotgun sequence	144280..144717	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJJZ010000049.1 Salmonella enterica strain PNUSAS395452 SAMN37982763-rid19953183.guided.24, whole genome shotgun sequence	2420..2857	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(SARC14)	94.78	441 / 445	ABOJJZ010000022.1 Salmonella enterica strain PNUSAS395452 SAMN37982763-rid19953183.denovo.22, whole genome shotgun sequence	41234..41673	enterobacteriales	IncFII(Yp)	91.67	216 / 230	ABOJJZ010000022.1 Salmonella enterica strain PNUSAS395452 SAMN37982763-rid19953183.denovo.22, whole genome shotgun sequence	41934..42148																																																											
GCA_033045495.1_PDT001953712.1_genomic.fna	Salmonella_enterica	0.5212	598.83 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJJY010000003.1 Salmonella enterica strain PNUSAS395424 SAMN37983658-rid19953193.denovo.03, whole genome shotgun sequence	383862..384299	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJJY010000045.1 Salmonella enterica strain PNUSAS395424 SAMN37983658-rid19953193.guided.20, whole genome shotgun sequence	5792..6229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.08	131 / 131	ABOJJY010000024.1 Salmonella enterica strain PNUSAS395424 SAMN37983658-rid19953193.denovo.27, whole genome shotgun sequence	2275..2405																																																						avrA	ABOJJY010000004.1	504085..504955	99.196	871	0						
GCA_033045515.1_PDT001953710.1_genomic.fna	Salmonella_enterica	0.5208	485.847 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJKA010000001.1 Salmonella enterica strain PNUSAS395432 SAMN37983655-rid19953173.denovo.01, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJKA010000045.1 Salmonella enterica strain PNUSAS395432 SAMN37983655-rid19953173.guided.16, whole genome shotgun sequence	20435..20872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJKA010000003.1	504334..505204	99.196	871	0						
GCA_033045535.1_PDT001953709.1_genomic.fna	Salmonella_enterica	0.5206	282.836 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aadA2,aadA1,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,sul2,sul2,tet(B),tet(M),tet(M),tet(M),tet(B),dfrA12,dfrA12	0		4	Col156,Col440I,Col440I,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJKC010000001.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.denovo.01, whole genome shotgun sequence	582055..582492	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOJKC010000031.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.denovo.34, whole genome shotgun sequence	7084..7875	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOJKC010000031.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.denovo.34, whole genome shotgun sequence	4679..5470	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOJKC010000046.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.denovo.54, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJKC010000046.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.denovo.54, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOJKC010000061.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.20, whole genome shotgun sequence	6313..6750	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOJKC010000064.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.38, whole genome shotgun sequence	6042..6833	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOJKC010000065.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.40, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	aph(6)-Id	100	837/837	ABOJKC010000069.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.59, whole genome shotgun sequence	872..1708	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJKC010000069.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.59, whole genome shotgun sequence	69..872	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOJKC010000049.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.denovo.57, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOJKC010000070.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.60, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	cmlA1	99.92	1260/1260	ABOJKC010000031.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.denovo.34, whole genome shotgun sequence	5563..6822	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOJKC010000039.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.denovo.45, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOJKC010000064.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.38, whole genome shotgun sequence	7095..8354	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOJKC010000065.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.40, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOJKC010000067.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.50, whole genome shotgun sequence	878..2091	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOJKC010000071.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.62, whole genome shotgun sequence	19..834	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOJKC010000072.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.63, whole genome shotgun sequence	19..834	Sulfamethoxazole	FN995456	sul2	99.88	816/816	ABOJKC010000073.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.64, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOJKC010000074.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.65, whole genome shotgun sequence	19..834	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOJKC010000030.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.denovo.33, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(M)	96.15	1920/1920	ABOJKC010000031.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.denovo.34, whole genome shotgun sequence	832..2751	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.19	1705/1920	ABOJKC010000065.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.40, whole genome shotgun sequence	4527..6231	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABOJKC010000066.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.42, whole genome shotgun sequence	873..2792	Doxycycline, Tetracycline, Minocycline	X04388	tet(B)	100	1206/1206	ABOJKC010000068.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.52, whole genome shotgun sequence	705..1910	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	498/498	ABOJKC010000031.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.denovo.34, whole genome shotgun sequence	8283..8780	Trimethoprim	AM040708	dfrA12	100	498/498	ABOJKC010000064.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.guided.38, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																								enterobacteriales	Col156	94.81	154 / 154	ABOJKC010000036.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.denovo.41, whole genome shotgun sequence	1417..1570	enterobacteriales	Col440I	92.04	113 / 114	ABOJKC010000041.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.denovo.47, whole genome shotgun sequence	335..447		enterobacteriales	Col440I	92.98	114 / 114	ABOJKC010000050.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.denovo.58, whole genome shotgun sequence	571..684		enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOJKC010000027.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.denovo.30, whole genome shotgun sequence	19808..20489		enterobacteriales	IncFIC(FII)	94	500 / 499	ABOJKC010000022.1 Salmonella enterica strain PNUSAS395433 SAMN37983654-rid19951983.denovo.23, whole genome shotgun sequence	55745..56241																											avrA	ABOJKC010000002.1	508765..509634	99.885	870	0						
GCA_033045555.1_PDT001953706.1_genomic.fna	Salmonella_enterica	0.5219	400.782 KB	4	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJKE010000001.1 Salmonella enterica strain PNUSAS395448 SAMN37983663-rid19953143.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJKE010000029.1 Salmonella enterica strain PNUSAS395448 SAMN37983663-rid19953143.guided.16, whole genome shotgun sequence	3522..3959	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJKE010000003.1	94208..95077	99.31	870	0						
GCA_033045575.1_PDT001953708.1_genomic.fna	Salmonella_enterica	0.5203	430.34 KB	4	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	8	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,blaTEM-176,blaTEM-176,fosA7,fosA7,floR,floR,qnrS1,qnrS1,tet(A),tet(A),dfrA14,dfrA14	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOJKB010000001.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.denovo.01, whole genome shotgun sequence	383907..384344	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.88	816/816	ABOJKB010000018.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.denovo.21, whole genome shotgun sequence	26141..26956	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	EF015636	aac(6')-Iaa	97.26	438/438	ABOJKB010000029.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.guided.17, whole genome shotgun sequence	678..1115	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.88	816/816	ABOJKB010000033.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.guided.24, whole genome shotgun sequence	148..963	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	EF015636	blaTEM-176	100	861/861	ABOJKB010000018.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.denovo.21, whole genome shotgun sequence	211..1071	Unknown Beta-lactam	GU550123	blaTEM-176	100	861/861	ABOJKB010000035.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.guided.27, whole genome shotgun sequence	252..1112	Unknown Beta-lactam	GU550123	fosA7	100	423/423	ABOJKB010000004.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.denovo.04, whole genome shotgun sequence	101622..102044	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABOJKB010000031.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.guided.19, whole genome shotgun sequence	44020..44442	Fosfomycin	LAPJ01000014	floR	98.11	1214/1215	ABOJKB010000020.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.denovo.26, whole genome shotgun sequence	914..2127	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABOJKB010000034.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.guided.25, whole genome shotgun sequence	3744..4957	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABOJKB010000021.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.denovo.29, whole genome shotgun sequence	737..1393	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOJKB010000036.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.guided.28, whole genome shotgun sequence	592..1248	Ciprofloxacin	AB187515	tet(A)	100	1275/1275	ABOJKB010000020.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.denovo.26, whole genome shotgun sequence	2728..4002	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOJKB010000034.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.guided.25, whole genome shotgun sequence	1869..3143	Doxycycline, Tetracycline	AF534183	dfrA14	100	474/474	ABOJKB010000022.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.denovo.31, whole genome shotgun sequence	182..655	Trimethoprim	KF921535	dfrA14	100	474/474	ABOJKB010000037.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.guided.30, whole genome shotgun sequence	1202..1675	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.93	374 / 374	ABOJKB010000018.1 Salmonella enterica strain PNUSAS395429 SAMN37983670-rid19953163.denovo.21, whole genome shotgun sequence	5198..5571																																																						avrA	ABOJKB010000002.1	564275..565144	99.54	870	0						
GCA_033045595.1_PDT001953707.1_genomic.fna	Salmonella_enterica	0.5218	466.658 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJKD010000001.1 Salmonella enterica strain PNUSAS395440 SAMN37983657-rid19953153.denovo.01, whole genome shotgun sequence	1370517..1370954	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJKD010000020.1 Salmonella enterica strain PNUSAS395440 SAMN37983657-rid19953153.guided.15, whole genome shotgun sequence	2654..3091	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJKD010000008.1	150693..151563	99.196	871	0						
GCA_033045615.1_PDT001953705.1_genomic.fna	Salmonella_enterica	0.5209	485.962 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJKF010000002.1 Salmonella enterica strain PNUSAS395444 SAMN37983660-rid19953133.denovo.02, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJKF010000043.1 Salmonella enterica strain PNUSAS395444 SAMN37983660-rid19953133.guided.22, whole genome shotgun sequence	1018..1455	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJKF010000003.1	504334..505204	99.196	871	0						
GCA_033045635.1_PDT001953704.1_genomic.fna	Salmonella_enterica	0.5223	395.207 KB	4	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJKG010000001.1 Salmonella enterica strain PNUSAS395438 SAMN37983668-rid19951973.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.91	431/438	ABOJKG010000030.1 Salmonella enterica strain PNUSAS395438 SAMN37983668-rid19951973.guided.22, whole genome shotgun sequence	1..431	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJKG010000003.1	122095..122964	99.31	870	0						
GCA_033045655.1_PDT001953703.1_genomic.fna	Salmonella_enterica	0.5211	273.824 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJKH010000003.1 Salmonella enterica strain PNUSAS395447 SAMN37983656-rid19953963.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJKH010000050.1 Salmonella enterica strain PNUSAS395447 SAMN37983656-rid19953963.guided.23, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJKH010000005.1	175017..175885	100	869	0						
GCA_033045675.1_PDT001953702.1_genomic.fna	Salmonella_enterica	0.5212	727.277 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOJKI010000001.1 Salmonella enterica strain PNUSAS395428 SAMN37983665-rid19951963.denovo.01, whole genome shotgun sequence	510742..511179	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOJKI010000021.1 Salmonella enterica strain PNUSAS395428 SAMN37983665-rid19951963.guided.16, whole genome shotgun sequence	2420..2857	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJKI010000003.1	544607..545475	99.425	870	0						
GCA_033046175.1_PDT001953554.1_genomic.fna	Salmonella_enterica	0.5202	604.687 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOJKJ010000001.1 Salmonella enterica strain PNUSAS395594 SAMN37982757-rid19951493.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOJKJ010000019.1 Salmonella enterica strain PNUSAS395594 SAMN37982757-rid19951493.guided.09, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOJKJ010000013.1 Salmonella enterica strain PNUSAS395594 SAMN37982757-rid19951493.denovo.16, whole genome shotgun sequence	239..369																																																						avrA	ABOJKJ010000002.1	561368..562237	99.425	870	0						
GCA_033046215.1_PDT001953552.1_genomic.fna	Salmonella_enterica	0.5213	666.245 KB	2	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJKL010000001.1 Salmonella enterica strain PNUSAS395450 SAMN37982762-rid19951473.denovo.01, whole genome shotgun sequence	1429892..1430329	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJKL010000025.1 Salmonella enterica strain PNUSAS395450 SAMN37982762-rid19951473.guided.18, whole genome shotgun sequence	4808..5245	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJKL010000002.1	514670..515538	99.195	870	0						
GCA_033046235.1_PDT001953553.1_genomic.fna	Salmonella_enterica	0.521	714.887 KB	4	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOJKK010000001.1 Salmonella enterica strain PNUSAS395578 SAMN37982751-rid19951483.denovo.01, whole genome shotgun sequence	300197..300634	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOJKK010000021.1 Salmonella enterica strain PNUSAS395578 SAMN37982751-rid19951483.guided.09, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOJKK010000015.1 Salmonella enterica strain PNUSAS395578 SAMN37982751-rid19951483.denovo.18, whole genome shotgun sequence	186..316																																																						avrA	ABOJKK010000003.1	575526..576394	99.655	869	0						
GCA_033046255.1_PDT001953551.1_genomic.fna	Salmonella_enterica	0.5224	627.806 KB	4	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJKM010000004.1 Salmonella enterica strain PNUSAS395575 SAMN37982754-rid19951463.denovo.04, whole genome shotgun sequence	145354..145791	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJKM010000018.1 Salmonella enterica strain PNUSAS395575 SAMN37982754-rid19951463.guided.14, whole genome shotgun sequence	25392..25829	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJKM010000003.1	553743..554612	99.77	870	0						
GCA_033046275.1_PDT001953550.1_genomic.fna	Salmonella_enterica	0.5228	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJKN010000001.1 Salmonella enterica strain PNUSAS395437 SAMN37982759-rid19951453.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJKN010000021.1 Salmonella enterica strain PNUSAS395437 SAMN37982759-rid19951453.guided.14, whole genome shotgun sequence	25778..26215	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJKN010000002.1	157308..158177	98.966	870	0						
GCA_033046295.1_PDT001953549.1_genomic.fna	Salmonella_enterica	0.5209	397.32 KB	6	aroC_3,dnaN_36,hemD_43,hisD_38,purE_16,sucA_42,thrA_38*	95*	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_36	hemD	100	100	hemD_43	hisD	100	100	hisD_38	purE	100	100	purE_16	sucA	100	100	sucA_42	thrA	99.8003992015968	100	thrA_38*	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOJKO010000002.1 Salmonella enterica strain PNUSAS395435 SAMN37982765-rid19951443.denovo.02, whole genome shotgun sequence	136207..136644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOJKO010000041.1 Salmonella enterica strain PNUSAS395435 SAMN37982765-rid19951443.guided.19, whole genome shotgun sequence	44320..44757	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJKO010000012.1	101941..102810	99.655	870	0						
GCA_033046315.1_PDT001953548.1_genomic.fna	Salmonella_enterica	0.5224	354.932 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOJKP010000001.1 Salmonella enterica strain PNUSAS395595 SAMN37982744-rid19951433.denovo.01, whole genome shotgun sequence	394608..395045	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJKP010000038.1 Salmonella enterica strain PNUSAS395595 SAMN37982744-rid19951433.guided.24, whole genome shotgun sequence	664..1101	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOJKP010000024.1 Salmonella enterica strain PNUSAS395595 SAMN37982744-rid19951433.denovo.27, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABOJKP010000026.1 Salmonella enterica strain PNUSAS395595 SAMN37982744-rid19951433.denovo.29, whole genome shotgun sequence	2528..2639																																																avrA	ABOJKP010000009.1	94166..95034	99.425	870	0						
GCA_033046335.1_PDT001953547.1_genomic.fna	Salmonella_enterica	0.5211	489.496 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJKQ010000001.1 Salmonella enterica strain PNUSAS395565 SAMN37982748-rid19951423.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJKQ010000024.1 Salmonella enterica strain PNUSAS395565 SAMN37982748-rid19951423.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJKQ010000011.1 Salmonella enterica strain PNUSAS395565 SAMN37982748-rid19951423.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOJKQ010000011.1 Salmonella enterica strain PNUSAS395565 SAMN37982748-rid19951423.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABOJKQ010000002.1	553636..554505	99.54	870	0						
GCA_033046355.1_PDT001953546.1_genomic.fna	Salmonella_enterica	0.5216	761.787 KB	2	aroC_5,dnaN_14,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	27	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX4	aroC	100	100	aroC_5	dnaN	100	100	dnaN_14	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJKS010000001.1 Salmonella enterica strain PNUSAS395592 SAMN37982724-rid19951413.denovo.01, whole genome shotgun sequence	1370963..1371400	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJKS010000021.1 Salmonella enterica strain PNUSAS395592 SAMN37982724-rid19951413.guided.16, whole genome shotgun sequence	7634..8071	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX4	100	374 / 374	ABOJKS010000012.1 Salmonella enterica strain PNUSAS395592 SAMN37982724-rid19951413.denovo.13, whole genome shotgun sequence	7851..8224																																																						avrA	ABOJKS010000004.1	151320..152189	99.77	870	0						
GCA_033046375.1_PDT001953543.1_genomic.fna	Salmonella_enterica	0.519	294.115 KB	7	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncI1-I(Alpha)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJKT010000002.1 Salmonella enterica strain PNUSAS395569 SAMN37982738-rid19951383.denovo.02, whole genome shotgun sequence	381566..382003	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJKT010000060.1 Salmonella enterica strain PNUSAS395569 SAMN37982738-rid19951383.guided.23, whole genome shotgun sequence	44263..44700	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABOJKT010000028.1 Salmonella enterica strain PNUSAS395569 SAMN37982738-rid19951383.denovo.30, whole genome shotgun sequence	17959..18601	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOJKT010000018.1 Salmonella enterica strain PNUSAS395569 SAMN37982738-rid19951383.denovo.18, whole genome shotgun sequence	71247..71388																																																avrA	ABOJKT010000005.1	168790..169658	99.31	870	0						
GCA_033046395.1_PDT001953544.1_genomic.fna	Salmonella_enterica	0.5204	430.185 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJKR010000001.1 Salmonella enterica strain PNUSAS395571 SAMN37982741-rid19951393.denovo.01, whole genome shotgun sequence	793206..793643	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJKR010000028.1 Salmonella enterica strain PNUSAS395571 SAMN37982741-rid19951393.guided.22, whole genome shotgun sequence	721..1158	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJKR010000010.1	140193..141061	99.195	870	0						
GCA_033046415.1_PDT001953542.1_genomic.fna	Salmonella_enterica	0.5208	279.746 KB	6	aroC_784*,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	Unknown	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	99.8003992015968	100	aroC_784*	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJKU010000001.1 Salmonella enterica strain PNUSAS395581 SAMN37982729-rid19951373.denovo.01, whole genome shotgun sequence	588290..588727	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJKU010000044.1 Salmonella enterica strain PNUSAS395581 SAMN37982729-rid19951373.guided.20, whole genome shotgun sequence	34233..34670	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOJKU010000016.1 Salmonella enterica strain PNUSAS395581 SAMN37982729-rid19951373.denovo.16, whole genome shotgun sequence	44623..45265	enterobacteriales	IncFII(S)	100	262 / 262	ABOJKU010000016.1 Salmonella enterica strain PNUSAS395581 SAMN37982729-rid19951373.denovo.16, whole genome shotgun sequence	60249..60510																																																avrA	ABOJKU010000006.1	95312..96181	99.885	870	0						
GCA_033046435.1_PDT001953541.1_genomic.fna	Salmonella_enterica	0.5221	558.057 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOJKV010000001.1 Salmonella enterica strain PNUSAS395576 SAMN37982732-rid19951363.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97	433/438	ABOJKV010000023.1 Salmonella enterica strain PNUSAS395576 SAMN37982732-rid19951363.guided.19, whole genome shotgun sequence	3639..4071	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJKV010000003.1	138375..139244	98.966	870	0						
GCA_033046455.1_PDT001953540.1_genomic.fna	Salmonella_enterica	0.5218	263.61 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJKX010000001.1 Salmonella enterica strain PNUSAS395567 SAMN37982735-rid19951353.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJKX010000034.1 Salmonella enterica strain PNUSAS395567 SAMN37982735-rid19951353.guided.26, whole genome shotgun sequence	4987..5424	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOJKX010000015.1 Salmonella enterica strain PNUSAS395567 SAMN37982735-rid19951353.denovo.15, whole genome shotgun sequence	80673..80814																																																						avrA	ABOJKX010000003.1	66915..67784	99.655	870	0						
GCA_033046475.1_PDT001953523.1_genomic.fna	Salmonella_enterica	0.5187	143.947 KB	12	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJKY010000014.1 Salmonella enterica strain 23CT09CH01-S1 SAMN37982683-rid19951323.denovo.14, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJKY010000041.1 Salmonella enterica strain 23CT09CH01-S1 SAMN37982683-rid19951323.denovo.43, whole genome shotgun sequence	19475..20311	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOJKY010000041.1 Salmonella enterica strain 23CT09CH01-S1 SAMN37982683-rid19951323.denovo.43, whole genome shotgun sequence	20311..21114	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOJKY010000075.1 Salmonella enterica strain 23CT09CH01-S1 SAMN37982683-rid19951323.guided.32, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJKY010000079.1 Salmonella enterica strain 23CT09CH01-S1 SAMN37982683-rid19951323.guided.61, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOJKY010000079.1 Salmonella enterica strain 23CT09CH01-S1 SAMN37982683-rid19951323.guided.61, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOJKY010000054.1 Salmonella enterica strain 23CT09CH01-S1 SAMN37982683-rid19951323.denovo.57, whole genome shotgun sequence	1638..2843	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJKY010000078.1 Salmonella enterica strain 23CT09CH01-S1 SAMN37982683-rid19951323.guided.58, whole genome shotgun sequence	4199..5404	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOJKY010000042.1 Salmonella enterica strain 23CT09CH01-S1 SAMN37982683-rid19951323.denovo.44, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABOJKY010000041.1 Salmonella enterica strain 23CT09CH01-S1 SAMN37982683-rid19951323.denovo.43, whole genome shotgun sequence	18591..18852		enterobacteriales	IncFII	96.95	262 / 261	ABOJKY010000079.1 Salmonella enterica strain 23CT09CH01-S1 SAMN37982683-rid19951323.guided.61, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOJKY010000048.1 Salmonella enterica strain 23CT09CH01-S1 SAMN37982683-rid19951323.denovo.50, whole genome shotgun sequence	5664..5805		enterobacteriales	IncX1	100	373 / 373	ABOJKY010000055.1 Salmonella enterica strain 23CT09CH01-S1 SAMN37982683-rid19951323.denovo.59, whole genome shotgun sequence	2153..2525																											avrA	ABOJKY010000033.1	39484..40353	99.655	870	0						
GCA_033046495.1_PDT001953524.1_genomic.fna	Salmonella_enterica	0.5213	370.127 KB	6	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,tet(A),tet(A)	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJKW010000004.1 Salmonella enterica strain 23CT09GT01-S1 SAMN37982681-rid19951333.denovo.04, whole genome shotgun sequence	252456..252893	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJKW010000029.1 Salmonella enterica strain 23CT09GT01-S1 SAMN37982681-rid19951333.denovo.32, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOJKW010000029.1 Salmonella enterica strain 23CT09GT01-S1 SAMN37982681-rid19951333.denovo.32, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJKW010000029.1 Salmonella enterica strain 23CT09GT01-S1 SAMN37982681-rid19951333.denovo.32, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJKW010000029.1 Salmonella enterica strain 23CT09GT01-S1 SAMN37982681-rid19951333.denovo.32, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJKW010000029.1 Salmonella enterica strain 23CT09GT01-S1 SAMN37982681-rid19951333.denovo.32, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOJKW010000045.1 Salmonella enterica strain 23CT09GT01-S1 SAMN37982681-rid19951333.guided.30, whole genome shotgun sequence	585..1022	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOJKW010000047.1 Salmonella enterica strain 23CT09GT01-S1 SAMN37982681-rid19951333.guided.39, whole genome shotgun sequence	674..1476	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJKW010000047.1 Salmonella enterica strain 23CT09GT01-S1 SAMN37982681-rid19951333.guided.39, whole genome shotgun sequence	673..1476	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJKW010000047.1 Salmonella enterica strain 23CT09GT01-S1 SAMN37982681-rid19951333.guided.39, whole genome shotgun sequence	673..1476	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJKW010000047.1 Salmonella enterica strain 23CT09GT01-S1 SAMN37982681-rid19951333.guided.39, whole genome shotgun sequence	673..1476	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABOJKW010000048.1 Salmonella enterica strain 23CT09GT01-S1 SAMN37982681-rid19951333.guided.40, whole genome shotgun sequence	38..874	Streptomycin	M28829	tet(A)	100	1200/1200	ABOJKW010000030.1 Salmonella enterica strain 23CT09GT01-S1 SAMN37982681-rid19951333.denovo.34, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJKW010000046.1 Salmonella enterica strain 23CT09GT01-S1 SAMN37982681-rid19951333.guided.33, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.93	374 / 374	ABOJKW010000025.1 Salmonella enterica strain 23CT09GT01-S1 SAMN37982681-rid19951333.denovo.25, whole genome shotgun sequence	772..1145																																																						avrA	ABOJKW010000009.1	39546..40415	99.655	870	0						
GCA_033046535.1_PDT001953521.1_genomic.fna	Salmonella_enterica	0.5213	178.185 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A),tet(A)	0		2	Col(pHAD28),Col(pHAD28),Col(pHAD28),IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJKZ010000001.1 Salmonella enterica strain 23CT09CL01-S1 SAMN37982682-rid19951303.denovo.01, whole genome shotgun sequence	145228..145665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJKZ010000076.1 Salmonella enterica strain 23CT09CL01-S1 SAMN37982682-rid19951303.guided.60, whole genome shotgun sequence	1476..1913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJKZ010000077.1 Salmonella enterica strain 23CT09CL01-S1 SAMN37982682-rid19951303.guided.61, whole genome shotgun sequence	1476..1913	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOJKZ010000024.1 Salmonella enterica strain 23CT09CL01-S1 SAMN37982682-rid19951303.denovo.24, whole genome shotgun sequence	14236..15381	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOJKZ010000072.1 Salmonella enterica strain 23CT09CL01-S1 SAMN37982682-rid19951303.guided.36, whole genome shotgun sequence	588..1733	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOJKZ010000050.1 Salmonella enterica strain 23CT09CL01-S1 SAMN37982682-rid19951303.denovo.52, whole genome shotgun sequence	3295..4110	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOJKZ010000074.1 Salmonella enterica strain 23CT09CL01-S1 SAMN37982682-rid19951303.guided.53, whole genome shotgun sequence	3336..4151	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOJKZ010000050.1 Salmonella enterica strain 23CT09CL01-S1 SAMN37982682-rid19951303.denovo.52, whole genome shotgun sequence	6287..7486	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1203/1275	ABOJKZ010000074.1 Salmonella enterica strain 23CT09CL01-S1 SAMN37982682-rid19951303.guided.53, whole genome shotgun sequence	6253..7455	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	ABOJKZ010000075.1 Salmonella enterica strain 23CT09CL01-S1 SAMN37982682-rid19951303.guided.59, whole genome shotgun sequence	2397..3596	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABOJKZ010000054.1 Salmonella enterica strain 23CT09CL01-S1 SAMN37982682-rid19951303.denovo.57, whole genome shotgun sequence	1326..1445	enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOJKZ010000056.1 Salmonella enterica strain 23CT09CL01-S1 SAMN37982682-rid19951303.denovo.63, whole genome shotgun sequence	371..501		enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOJKZ010000057.1 Salmonella enterica strain 23CT09CL01-S1 SAMN37982682-rid19951303.denovo.64, whole genome shotgun sequence	3134..3264		enterobacteriales	IncC	100	417 / 417	ABOJKZ010000029.1 Salmonella enterica strain 23CT09CL01-S1 SAMN37982682-rid19951303.denovo.29, whole genome shotgun sequence	38349..38765																																		avrA	ABOJKZ010000011.1	98027..98896	99.885	870	0						
GCA_033046555.1_PDT001953519.1_genomic.fna	Salmonella_enterica	0.5207	400.804 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJLC010000001.1 Salmonella enterica strain 23CT09CG01-S1 SAMN37982680-rid19951283.denovo.01, whole genome shotgun sequence	767554..767991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJLC010000034.1 Salmonella enterica strain 23CT09CG01-S1 SAMN37982680-rid19951283.guided.25, whole genome shotgun sequence	2286..2723	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJLC010000022.1 Salmonella enterica strain 23CT09CG01-S1 SAMN37982680-rid19951283.denovo.24, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABOJLC010000025.1 Salmonella enterica strain 23CT09CG01-S1 SAMN37982680-rid19951283.denovo.28, whole genome shotgun sequence	3390..3651		enterobacteriales	IncX1	98.93	374 / 374	ABOJLC010000018.1 Salmonella enterica strain 23CT09CG01-S1 SAMN37982680-rid19951283.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABOJLC010000005.1	174754..175623	99.54	870	0						
GCA_033046595.1_PDT001953516.1_genomic.fna	Salmonella_enterica	0.5203	203.759 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJLF010000001.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJLF010000027.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.denovo.28, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJLF010000027.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.denovo.28, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOJLF010000039.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.denovo.43, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOJLF010000039.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.denovo.43, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOJLF010000048.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.denovo.56, whole genome shotgun sequence	93..908	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	aac(6')-Iaa	97.49	438/438	ABOJLF010000060.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.guided.35, whole genome shotgun sequence	8847..9284	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJLF010000062.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.guided.46, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJLF010000062.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.guided.46, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOJLF010000064.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.guided.50, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOJLF010000064.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.guided.50, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOJLF010000065.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.guided.55, whole genome shotgun sequence	125..940	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	X62115	sul1	100	840/840	ABOJLF010000027.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.denovo.28, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJLF010000062.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.guided.46, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOJLF010000027.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.denovo.28, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJLF010000061.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.guided.41, whole genome shotgun sequence	5135..6334	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOJLF010000038.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.denovo.42, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOJLF010000063.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.guided.49, whole genome shotgun sequence	1114..1587	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOJLF010000031.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.denovo.32, whole genome shotgun sequence	9109..9668	enterobacteriales	IncX1	98.93	374 / 374	ABOJLF010000024.1 Salmonella enterica strain PNUSAS395365 SAMN37982554-rid19951253.denovo.24, whole genome shotgun sequence	7449..7822																																																avrA	ABOJLF010000002.1	149828..150697	99.655	870	0						
GCA_033046635.1_PDT001953515.1_genomic.fna	Salmonella_enterica	0.5221	594.045 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJLE010000001.1 Salmonella enterica strain PNUSAS395372 SAMN37982561-rid19951243.denovo.01, whole genome shotgun sequence	529930..530367	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJLE010000022.1 Salmonella enterica strain PNUSAS395372 SAMN37982561-rid19951243.guided.16, whole genome shotgun sequence	32124..32561	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJLE010000003.1	553694..554563	99.655	870	0						
GCA_033046655.1_PDT001953514.1_genomic.fna	Salmonella_enterica	0.5206	166.041 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		1	p0111	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJLG010000001.1 Salmonella enterica strain PNUSAS395366 SAMN37982555-rid19951233.denovo.01, whole genome shotgun sequence	349019..349456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJLG010000076.1 Salmonella enterica strain PNUSAS395366 SAMN37982555-rid19951233.guided.61, whole genome shotgun sequence	3391..3828	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOJLG010000045.1 Salmonella enterica strain PNUSAS395366 SAMN37982555-rid19951233.denovo.46, whole genome shotgun sequence	424..1629	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJLG010000074.1 Salmonella enterica strain PNUSAS395366 SAMN37982555-rid19951233.guided.50, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	p0111	99.66	885 / 885	ABOJLG010000036.1 Salmonella enterica strain PNUSAS395366 SAMN37982555-rid19951233.denovo.37, whole genome shotgun sequence	13088..13972																																																						avrA	ABOJLG010000009.1	93865..94734	99.885	870	0						
GCA_033046675.1_PDT001953513.1_genomic.fna	Salmonella_enterica	0.5211	406.117 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJLH010000001.1 Salmonella enterica strain PNUSAS395371 SAMN37982559-rid19951223.denovo.01, whole genome shotgun sequence	774495..774932	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJLH010000027.1 Salmonella enterica strain PNUSAS395371 SAMN37982559-rid19951223.guided.14, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJLH010000017.1 Salmonella enterica strain PNUSAS395371 SAMN37982559-rid19951223.denovo.18, whole genome shotgun sequence	6829..7471	enterobacteriales	IncFII(S)	100	262 / 262	ABOJLH010000019.1 Salmonella enterica strain PNUSAS395371 SAMN37982559-rid19951223.denovo.22, whole genome shotgun sequence	3344..3605																																																avrA	ABOJLH010000002.1	553637..554506	99.54	870	0						
GCA_033046695.1_PDT001953512.1_genomic.fna	Salmonella_enterica	0.5214	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJLI010000001.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJLI010000025.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.denovo.27, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJLI010000025.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.denovo.27, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOJLI010000040.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.denovo.46, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOJLI010000040.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.denovo.46, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABOJLI010000056.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.guided.29, whole genome shotgun sequence	937..1728	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJLI010000056.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.guided.29, whole genome shotgun sequence	937..1728	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOJLI010000057.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.guided.37, whole genome shotgun sequence	10439..10876	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOJLI010000059.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.guided.45, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOJLI010000059.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.guided.45, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOJLI010000041.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.denovo.47, whole genome shotgun sequence	1263..2138	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOJLI010000060.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.guided.48, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOJLI010000035.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.denovo.39, whole genome shotgun sequence	3320..4533	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOJLI010000058.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.guided.40, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOJLI010000025.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.denovo.27, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJLI010000056.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.guided.29, whole genome shotgun sequence	2233..3072	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOJLI010000025.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.denovo.27, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJLI010000056.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.guided.29, whole genome shotgun sequence	15589..16788	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOJLI010000029.1 Salmonella enterica strain PNUSAS395364 SAMN37982553-rid19951213.denovo.32, whole genome shotgun sequence	9109..9668																																																						avrA	ABOJLI010000002.1	149828..150697	99.655	870	0						
GCA_033046715.1_PDT001953511.1_genomic.fna	Salmonella_enterica	0.5219	191.426 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJLJ010000001.1 Salmonella enterica strain PNUSAS395368 SAMN37982556-rid19951203.denovo.01, whole genome shotgun sequence	381667..382104	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJLJ010000045.1 Salmonella enterica strain PNUSAS395368 SAMN37982556-rid19951203.guided.37, whole genome shotgun sequence	1920..2357	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJLJ010000002.1	208058..208926	99.77	870	0						
GCA_033046735.1_PDT001953510.1_genomic.fna	Salmonella_enterica	0.5206	307.021 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJLK010000012.1 Salmonella enterica strain PNUSAS395370 SAMN37982560-rid19951193.denovo.12, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJLK010000039.1 Salmonella enterica strain PNUSAS395370 SAMN37982560-rid19951193.guided.21, whole genome shotgun sequence	40070..40507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOJLK010000018.1 Salmonella enterica strain PNUSAS395370 SAMN37982560-rid19951193.denovo.18, whole genome shotgun sequence	3063..3596																																																						avrA	ABOJLK010000001.1	187842..188708	98.966	870	0						
GCA_033046755.1_PDT001953509.1_genomic.fna	Salmonella_enterica	0.5212	339.883 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJLL010000001.1 Salmonella enterica strain PNUSAS395369 SAMN37982558-rid19951183.denovo.01, whole genome shotgun sequence	77774..78211	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJLL010000046.1 Salmonella enterica strain PNUSAS395369 SAMN37982558-rid19951183.guided.30, whole genome shotgun sequence	3419..3856	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	94.74	114 / 114	ABOJLL010000028.1 Salmonella enterica strain PNUSAS395369 SAMN37982558-rid19951183.denovo.31, whole genome shotgun sequence	2725..2838																																																						avrA	ABOJLL010000005.1	183135..184004	98.966	870	0						
GCA_033046775.1_PDT001953508.1_genomic.fna	Salmonella_enterica	0.52	472.946 KB	4	aroC_11,dnaN_10,hemD_25,hisD_42,purE_40,sucA_13,thrA_4	411	4:e,h:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJLM010000001.1 Salmonella enterica strain PNUSAS395367 SAMN37982557-rid19951173.denovo.01, whole genome shotgun sequence	623645..624082	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJLM010000029.1 Salmonella enterica strain PNUSAS395367 SAMN37982557-rid19951173.guided.18, whole genome shotgun sequence	5165..5602	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJLM010000007.1	94145..95014	99.54	870	0						
GCA_033046795.1_PDT001953507.1_genomic.fna	Salmonella_enterica	0.5203	396.794 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJLN010000011.1 Salmonella enterica strain PNUSAS395373 SAMN37982562-rid19951163.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJLN010000037.1 Salmonella enterica strain PNUSAS395373 SAMN37982562-rid19951163.guided.23, whole genome shotgun sequence	30311..30748	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOJLN010000018.1 Salmonella enterica strain PNUSAS395373 SAMN37982562-rid19951163.denovo.18, whole genome shotgun sequence	34956..35489	enterobacteriales	IncX1	98.93	374 / 374	ABOJLN010000022.1 Salmonella enterica strain PNUSAS395373 SAMN37982562-rid19951163.denovo.22, whole genome shotgun sequence	3887..4260																																																avrA	ABOJLN010000001.1	219099..219965	98.966	870	0						
GCA_033046815.1_PDT001953504.1_genomic.fna	Salmonella_enterica	0.5221	368.476 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJLO010000001.1 Salmonella enterica strain PNUSAS395518 SAMN37982021-rid19951143.denovo.01, whole genome shotgun sequence	834313..834750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJLO010000024.1 Salmonella enterica strain PNUSAS395518 SAMN37982021-rid19951143.guided.18, whole genome shotgun sequence	24943..25380	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJLO010000006.1	147981..148850	99.77	870	0						
GCA_033046825.1_PDT001953469.1_genomic.fna	Salmonella_enterica	0.5203	707.807 KB	3	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJLP010000002.1 Salmonella enterica strain PNUSAS395482 SAMN37981112-rid19950923.denovo.02, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJLP010000024.1 Salmonella enterica strain PNUSAS395482 SAMN37981112-rid19950923.guided.16, whole genome shotgun sequence	3301..3738	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033046855.1_PDT001953464.1_genomic.fna	Salmonella_enterica	0.5219	466.716 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJLQ010000001.1 Salmonella enterica strain PNUSAS395465 SAMN37981091-rid19950893.denovo.01, whole genome shotgun sequence	674296..674733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJLQ010000023.1 Salmonella enterica strain PNUSAS395465 SAMN37981091-rid19950893.guided.16, whole genome shotgun sequence	3275..3712	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOJLQ010000016.1 Salmonella enterica strain PNUSAS395465 SAMN37981091-rid19950893.denovo.19, whole genome shotgun sequence	239..369																																																						avrA	ABOJLQ010000009.1	150695..151565	99.196	871	0						
GCA_033046975.1_PDT001759736.1_genomic.fna	Salmonella_enterica	0.5214	174.992 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJLY010000001.1 Salmonella enterica strain PNUSAS351830 SAMN35439905-rid18231553.denovo.01, whole genome shotgun sequence	481380..481817	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJLY010000058.1 Salmonella enterica strain PNUSAS351830 SAMN35439905-rid18231553.guided.38, whole genome shotgun sequence	3894..4331	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColRNAI	90.08	131 / 130	ABOJLY010000047.1 Salmonella enterica strain PNUSAS351830 SAMN35439905-rid18231553.denovo.50, whole genome shotgun sequence	1949..2079	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJLY010000037.1 Salmonella enterica strain PNUSAS351830 SAMN35439905-rid18231553.denovo.37, whole genome shotgun sequence	6825..7467		enterobacteriales	IncFII(S)	100	262 / 262	ABOJLY010000026.1 Salmonella enterica strain PNUSAS351830 SAMN35439905-rid18231553.denovo.26, whole genome shotgun sequence	37108..37369																																									avrA	ABOJLY010000004.1	132287..133156	99.54	870	0						
GCA_033047035.1_PDT001759733.1_genomic.fna	Salmonella_enterica	0.5213	469.98 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJLZ010000001.1 Salmonella enterica strain PNUSAS351811 SAMN35439903-rid18231533.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJLZ010000029.1 Salmonella enterica strain PNUSAS351811 SAMN35439903-rid18231533.guided.19, whole genome shotgun sequence	20586..21023	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJLZ010000019.1 Salmonella enterica strain PNUSAS351811 SAMN35439903-rid18231533.denovo.21, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABOJLZ010000021.1 Salmonella enterica strain PNUSAS351811 SAMN35439903-rid18231533.denovo.24, whole genome shotgun sequence	3415..3676																																																avrA	ABOJLZ010000007.1	175109..175978	99.54	870	0						
GCA_033047075.1_PDT001759730.1_genomic.fna	Salmonella_enterica	0.5206	183.7 KB	9	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOJMB010000010.1 Salmonella enterica strain PNUSAS351750 SAMN35439898-rid18230703.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOJMB010000058.1 Salmonella enterica strain PNUSAS351750 SAMN35439898-rid18230703.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_033047095.1_PDT001759728.1_genomic.fna	Salmonella_enterica	0.5203	477.505 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncI2(Delta)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJMC010000001.1 Salmonella enterica strain PNUSAS351752 SAMN35439896-rid18231493.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJMC010000026.1 Salmonella enterica strain PNUSAS351752 SAMN35439896-rid18231493.guided.20, whole genome shotgun sequence	8507..8944	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJMC010000018.1 Salmonella enterica strain PNUSAS351752 SAMN35439896-rid18231493.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOJMC010000015.1 Salmonella enterica strain PNUSAS351752 SAMN35439896-rid18231493.denovo.15, whole genome shotgun sequence	3714..3975		enterobacteriales	IncI2(Delta)	97.83	322 / 316	ABOJMC010000014.1 Salmonella enterica strain PNUSAS351752 SAMN35439896-rid18231493.denovo.14, whole genome shotgun sequence	56941..57262																																									avrA	ABOJMC010000002.1	553626..554495	99.54	870	0						
GCA_033047115.1_PDT001759729.1_genomic.fna	Salmonella_enterica	0.52	338.783 KB	6	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	10	aac(6')-Iaa,aadA2,aadA1,aac(6')-Iaa,aadA2,aadA1,blaCTX-M-15,blaCTX-M-15,erm(B),erm(B),cmlA1,cmlA1,cmlA1,qnrS1,qnrS1,sul3,sul3,tet(A),tet(A),dfrA12,dfrA12	1	parC_p.T57S	4	Col(pHAD28),ColRNAI,IncFII,IncI1-I(Alpha)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJMD010000001.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.denovo.01, whole genome shotgun sequence	110416..110853	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOJMD010000025.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.denovo.26, whole genome shotgun sequence	6385..7176	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOJMD010000025.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.denovo.26, whole genome shotgun sequence	3980..4771	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.95	438/438	ABOJMD010000048.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.guided.27, whole genome shotgun sequence	2196..2633	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOJMD010000050.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.guided.33, whole genome shotgun sequence	6057..6848	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOJMD010000051.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.guided.34, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-15	100	876/876	ABOJMD010000029.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.denovo.32, whole genome shotgun sequence	200..1075	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	ABOJMD010000054.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.guided.42, whole genome shotgun sequence	175..1050	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	erm(B)	99.86	738/738	ABOJMD010000034.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.denovo.41, whole genome shotgun sequence	291..1028	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	JN899585	erm(B)	99.86	738/738	ABOJMD010000053.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.guided.40, whole genome shotgun sequence	332..1069	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	JN899585	cmlA1	99.92	1260/1260	ABOJMD010000025.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.denovo.26, whole genome shotgun sequence	4864..6123	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOJMD010000050.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.guided.33, whole genome shotgun sequence	7110..8369	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOJMD010000051.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.guided.34, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	qnrS1	100	657/657	ABOJMD010000029.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.denovo.32, whole genome shotgun sequence	5716..6372	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOJMD010000055.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.guided.43, whole genome shotgun sequence	1460..2116	Ciprofloxacin	AB187515	sul3	100	792/792	ABOJMD010000025.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.denovo.26, whole genome shotgun sequence	2018..2809	Sulfamethoxazole	AJ459418	sul3	100	792/792	ABOJMD010000051.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.guided.34, whole genome shotgun sequence	3770..4561	Sulfamethoxazole	AJ459418	tet(A)	100	1200/1200	ABOJMD010000026.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.denovo.29, whole genome shotgun sequence	4076..5275	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJMD010000052.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.guided.36, whole genome shotgun sequence	1333..2532	Doxycycline, Tetracycline	AJ517790	dfrA12	100	498/498	ABOJMD010000025.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.denovo.26, whole genome shotgun sequence	7584..8081	Trimethoprim	AM040708	dfrA12	100	498/498	ABOJMD010000050.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.guided.33, whole genome shotgun sequence	5152..5649	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOJMD010000036.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.denovo.45, whole genome shotgun sequence	1708..1838	enterobacteriales	ColRNAI	91.07	112 / 130	ABOJMD010000035.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.denovo.44, whole genome shotgun sequence	2005..2116		enterobacteriales	IncFII	100	261 / 261	ABOJMD010000028.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.denovo.31, whole genome shotgun sequence	4389..4649		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJMD010000026.1 Salmonella enterica strain PNUSAS351751 SAMN35439895-rid18231503.denovo.29, whole genome shotgun sequence	10638..10779																																		avrA	ABOJMD010000010.1	162746..163615	98.966	870	0						
GCA_033047135.1_PDT001759727.1_genomic.fna	Salmonella_enterica	0.5223	208.447 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJME010000001.1 Salmonella enterica strain PNUSAS351793 SAMN35439892-rid18231483.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJME010000044.1 Salmonella enterica strain PNUSAS351793 SAMN35439892-rid18231483.guided.23, whole genome shotgun sequence	8093..8530	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJME010000003.1	149828..150697	99.655	870	0						
GCA_033047155.1_PDT001759726.1_genomic.fna	Salmonella_enterica	0.5222	417.161 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJMG010000001.1 Salmonella enterica strain PNUSAS351792 SAMN35439893-rid18231473.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJMG010000034.1 Salmonella enterica strain PNUSAS351792 SAMN35439893-rid18231473.guided.16, whole genome shotgun sequence	32294..32731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJMG010000002.1	183093..183962	98.966	870	0						
GCA_033047175.1_PDT001759725.1_genomic.fna	Salmonella_enterica	0.5209	412.517 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJMF010000001.1 Salmonella enterica strain PNUSAS351795 SAMN35439891-rid18230693.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJMF010000030.1 Salmonella enterica strain PNUSAS351795 SAMN35439891-rid18230693.guided.16, whole genome shotgun sequence	7748..8185	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJMF010000018.1 Salmonella enterica strain PNUSAS351795 SAMN35439891-rid18230693.denovo.20, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOJMF010000020.1 Salmonella enterica strain PNUSAS351795 SAMN35439891-rid18230693.denovo.23, whole genome shotgun sequence	3414..3675																																																avrA	ABOJMF010000008.1	175109..175978	99.54	870	0						
GCA_033047195.1_PDT001759724.1_genomic.fna	Salmonella_enterica	0.5212	194.508 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJMH010000001.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJMH010000027.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.denovo.27, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJMH010000027.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.denovo.27, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOJMH010000040.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.denovo.48, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOJMH010000040.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.denovo.48, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOJMH010000049.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.denovo.58, whole genome shotgun sequence	93..908	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	X62115	aadA1	99.75	792/792	ABOJMH010000064.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.guided.40, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJMH010000064.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.guided.40, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOJMH010000067.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.guided.47, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOJMH010000067.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.guided.47, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOJMH010000068.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.guided.56, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	X62115	floR	98.19	1214/1215	ABOJMH010000038.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.denovo.43, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOJMH010000065.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.guided.44, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOJMH010000027.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.denovo.27, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJMH010000064.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.guided.40, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOJMH010000027.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.denovo.27, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJMH010000063.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.guided.39, whole genome shotgun sequence	2638..3837	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOJMH010000036.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.denovo.41, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOJMH010000066.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.guided.45, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOJMH010000031.1 Salmonella enterica strain PNUSAS351800 SAMN35439889-rid18231463.denovo.33, whole genome shotgun sequence	9109..9668																																																						avrA	ABOJMH010000003.1	39430..40299	99.655	870	0						
GCA_033047215.1_PDT001759723.1_genomic.fna	Salmonella_enterica	0.5208	489.739 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJMI010000001.1 Salmonella enterica strain PNUSAS351799 SAMN35439886-rid18231453.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJMI010000029.1 Salmonella enterica strain PNUSAS351799 SAMN35439886-rid18231453.guided.16, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJMI010000014.1 Salmonella enterica strain PNUSAS351799 SAMN35439886-rid18231453.denovo.14, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABOJMI010000014.1 Salmonella enterica strain PNUSAS351799 SAMN35439886-rid18231453.denovo.14, whole genome shotgun sequence	4078..4339																																																avrA	ABOJMI010000002.1	552776..553645	99.54	870	0						
GCA_033047235.1_PDT001759722.1_genomic.fna	Salmonella_enterica	0.5137	216.464 KB	7	aroC_56,dnaN_25,hemD_29,hisD_56,purE_48,sucA_50,thrA_51	106	-:z4,z23:-	0		1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_56	dnaN	100	100	dnaN_25	hemD	100	100	hemD_29	hisD	100	100	hisD_56	purE	100	100	purE_48	sucA	100	100	sucA_50	thrA	100	100	thrA_51	-	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	98.85	524 / 534	ABOJMJ010000023.1 Salmonella enterica strain PNUSAS351801 SAMN35439882-rid18230683.denovo.23, whole genome shotgun sequence	1264..1787																																																																	
GCA_033047255.1_PDT001759721.1_genomic.fna	Salmonella_enterica	0.5214	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI(Gamma)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJML010000004.1 Salmonella enterica strain PNUSAS351790 SAMN35439888-rid18231443.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJML010000060.1 Salmonella enterica strain PNUSAS351790 SAMN35439888-rid18231443.guided.23, whole genome shotgun sequence	31762..32199	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOJML010000037.1 Salmonella enterica strain PNUSAS351790 SAMN35439888-rid18231443.denovo.38, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOJML010000034.1 Salmonella enterica strain PNUSAS351790 SAMN35439888-rid18231443.denovo.35, whole genome shotgun sequence	29382..29643		enterobacteriales	IncI(Gamma)	97.81	137 / 141	ABOJML010000016.1 Salmonella enterica strain PNUSAS351790 SAMN35439888-rid18231443.denovo.16, whole genome shotgun sequence	72268..72404																																									avrA	ABOJML010000002.1	401523..402391	100	869	0						
GCA_033047275.1_PDT001759720.1_genomic.fna	Salmonella_enterica	0.5205	148.613 KB	12	aroC_2,dnaN_15,hemD_21,hisD_138,purE_130,sucA_139,thrA_12	405	7:y:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_15	hemD	100	100	hemD_21	hisD	100	100	hisD_138	purE	100	100	purE_130	sucA	100	100	sucA_139	thrA	100	100	thrA_12	7	y	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hartford		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJMK010000004.1 Salmonella enterica strain PNUSAS351797 SAMN35439887-rid18230673.denovo.04, whole genome shotgun sequence	37876..38313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJMK010000056.1 Salmonella enterica strain PNUSAS351797 SAMN35439887-rid18230673.guided.44, whole genome shotgun sequence	10463..10900	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOJMK010000028.1 Salmonella enterica strain PNUSAS351797 SAMN35439887-rid18230673.denovo.28, whole genome shotgun sequence	5905..6438																																																						avrA	ABOJMK010000027.1	39342..40211	99.425	870	0						
GCA_033047295.1_PDT001759719.1_genomic.fna	Salmonella_enterica	0.5206	249.311 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJMM010000001.1 Salmonella enterica strain PNUSAS351794 SAMN35439890-rid18231433.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJMM010000038.1 Salmonella enterica strain PNUSAS351794 SAMN35439890-rid18231433.guided.28, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJMM010000026.1 Salmonella enterica strain PNUSAS351794 SAMN35439890-rid18231433.denovo.27, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOJMM010000028.1 Salmonella enterica strain PNUSAS351794 SAMN35439890-rid18231433.denovo.31, whole genome shotgun sequence	3388..3649		enterobacteriales	IncX1	98.93	374 / 374	ABOJMM010000022.1 Salmonella enterica strain PNUSAS351794 SAMN35439890-rid18231433.denovo.22, whole genome shotgun sequence	32011..32384																																									avrA	ABOJMM010000005.1	174875..175744	99.54	870	0						
GCA_033047315.1_PDT001759718.1_genomic.fna	Salmonella_enterica	0.5221	397.923 KB	6	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOJMN010000003.1 Salmonella enterica strain PNUSAS351798 SAMN35439884-rid18231423.denovo.03, whole genome shotgun sequence	256215..256652	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOJMN010000039.1 Salmonella enterica strain PNUSAS351798 SAMN35439884-rid18231423.guided.11, whole genome shotgun sequence	42403..42840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJMN010000001.1	407821..408690	99.31	870	0						
GCA_033047335.1_PDT001759717.1_genomic.fna	Salmonella_enterica	0.5149	264.656 KB	7	aroC_33,dnaN_26,hemD_30,hisD_144,purE_464,sucA_87,thrA_134	1848	61:z52:z53	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_33	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_144	purE	100	100	purE_464	sucA	100	100	sucA_87	thrA	100	100	thrA_134	61	z52	z53	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:z52:z53		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJMO010000002.1 Salmonella enterica strain PNUSAS351791 SAMN35439885-rid18231413.denovo.02, whole genome shotgun sequence	96196..96633	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJMO010000094.1 Salmonella enterica strain PNUSAS351791 SAMN35439885-rid18231413.guided.24, whole genome shotgun sequence	21034..21471	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOJMO010000037.1 Salmonella enterica strain PNUSAS351791 SAMN35439885-rid18231413.denovo.41, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOJMO010000097.1 Salmonella enterica strain PNUSAS351791 SAMN35439885-rid18231413.guided.40, whole genome shotgun sequence	920..1564	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJMO010000037.1 Salmonella enterica strain PNUSAS351791 SAMN35439885-rid18231413.denovo.41, whole genome shotgun sequence	1519..1649	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJMO010000097.1 Salmonella enterica strain PNUSAS351791 SAMN35439885-rid18231413.guided.40, whole genome shotgun sequence	264..394																																																avrA	ABOJMO010000008.1	38393..39262	96.437	870	0						
GCA_033047355.1_PDT001759713.1_genomic.fna	Salmonella_enterica	0.5206	180.806 KB	9	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJMQ010000012.1 Salmonella enterica strain PNUSAS351735 SAMN35439861-rid18231383.denovo.12, whole genome shotgun sequence	31197..31634	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOJMQ010000039.1 Salmonella enterica strain PNUSAS351735 SAMN35439861-rid18231383.denovo.40, whole genome shotgun sequence	6190..6992	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJMQ010000039.1 Salmonella enterica strain PNUSAS351735 SAMN35439861-rid18231383.denovo.40, whole genome shotgun sequence	6190..6993	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJMQ010000039.1 Salmonella enterica strain PNUSAS351735 SAMN35439861-rid18231383.denovo.40, whole genome shotgun sequence	6190..6993	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJMQ010000039.1 Salmonella enterica strain PNUSAS351735 SAMN35439861-rid18231383.denovo.40, whole genome shotgun sequence	6190..6993	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOJMQ010000039.1 Salmonella enterica strain PNUSAS351735 SAMN35439861-rid18231383.denovo.40, whole genome shotgun sequence	5450..6190	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOJMQ010000039.1 Salmonella enterica strain PNUSAS351735 SAMN35439861-rid18231383.denovo.40, whole genome shotgun sequence	5450..6190	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABOJMQ010000064.1 Salmonella enterica strain PNUSAS351735 SAMN35439861-rid18231383.guided.41, whole genome shotgun sequence	698..1135	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOJMQ010000066.1 Salmonella enterica strain PNUSAS351735 SAMN35439861-rid18231383.guided.44, whole genome shotgun sequence	7549..8351	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJMQ010000066.1 Salmonella enterica strain PNUSAS351735 SAMN35439861-rid18231383.guided.44, whole genome shotgun sequence	7548..8351	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJMQ010000066.1 Salmonella enterica strain PNUSAS351735 SAMN35439861-rid18231383.guided.44, whole genome shotgun sequence	7548..8351	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJMQ010000066.1 Salmonella enterica strain PNUSAS351735 SAMN35439861-rid18231383.guided.44, whole genome shotgun sequence	7548..8351	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOJMQ010000066.1 Salmonella enterica strain PNUSAS351735 SAMN35439861-rid18231383.guided.44, whole genome shotgun sequence	8351..9091	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOJMQ010000066.1 Salmonella enterica strain PNUSAS351735 SAMN35439861-rid18231383.guided.44, whole genome shotgun sequence	8351..9091	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOJMQ010000050.1 Salmonella enterica strain PNUSAS351735 SAMN35439861-rid18231383.denovo.54, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABOJMQ010000027.1 Salmonella enterica strain PNUSAS351735 SAMN35439861-rid18231383.denovo.27, whole genome shotgun sequence	4946..5442																																																avrA	ABOJMQ010000003.1	174733..175602	98.966	870	0						
GCA_033047375.1_PDT001759716.1_genomic.fna	Salmonella_enterica	0.5212	476.617 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJMP010000001.1 Salmonella enterica strain PNUSAS351796 SAMN35439883-rid18231403.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJMP010000030.1 Salmonella enterica strain PNUSAS351796 SAMN35439883-rid18231403.guided.20, whole genome shotgun sequence	10980..11417	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJMP010000018.1 Salmonella enterica strain PNUSAS351796 SAMN35439883-rid18231403.denovo.21, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABOJMP010000015.1 Salmonella enterica strain PNUSAS351796 SAMN35439883-rid18231403.denovo.15, whole genome shotgun sequence	3704..3965																																																avrA	ABOJMP010000002.1	505400..506269	99.54	870	0						
GCA_033047395.1_PDT001759712.1_genomic.fna	Salmonella_enterica	0.5137	166.504 KB	9	aroC_33,dnaN_173,hemD_30,hisD_26,purE_141,sucA_275,thrA_28	1256	48:i:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_33	dnaN	100	100	dnaN_173	hemD	100	100	hemD_30	hisD	100	100	hisD_26	purE	100	100	purE_141	sucA	100	100	sucA_275	thrA	100	100	thrA_28	48	i	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:i:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJMR010000017.1 Salmonella enterica strain PNUSAS351744 SAMN35439855-rid18231373.denovo.17, whole genome shotgun sequence	79085..79522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJMR010000065.1 Salmonella enterica strain PNUSAS351744 SAMN35439855-rid18231373.guided.44, whole genome shotgun sequence	3649..4086	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJMR010000001.1	76937..77806	96.667	870	0						
GCA_033047415.1_PDT001759710.1_genomic.fna	Salmonella_enterica	0.522	257.833 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJMT010000001.1 Salmonella enterica strain PNUSAS351733 SAMN35439852-rid18230653.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJMT010000050.1 Salmonella enterica strain PNUSAS351733 SAMN35439852-rid18230653.guided.35, whole genome shotgun sequence	274..711	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABOJMT010000035.1 Salmonella enterica strain PNUSAS351733 SAMN35439852-rid18230653.denovo.38, whole genome shotgun sequence	3981..4111	enterobacteriales	IncFIB(S)	100	643 / 643	ABOJMT010000024.1 Salmonella enterica strain PNUSAS351733 SAMN35439852-rid18230653.denovo.24, whole genome shotgun sequence	44717..45359		enterobacteriales	IncFII(S)	100	262 / 262	ABOJMT010000024.1 Salmonella enterica strain PNUSAS351733 SAMN35439852-rid18230653.denovo.24, whole genome shotgun sequence	29371..29632																																									avrA	ABOJMT010000005.1	155216..156084	100	869	0						
GCA_033047435.1_PDT001759711.1_genomic.fna	Salmonella_enterica	0.5217	278.672 KB	5	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJMS010000001.1 Salmonella enterica strain PNUSAS351741 SAMN35439866-rid18231363.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJMS010000031.1 Salmonella enterica strain PNUSAS351741 SAMN35439866-rid18231363.denovo.33, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJMS010000031.1 Salmonella enterica strain PNUSAS351741 SAMN35439866-rid18231363.denovo.33, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOJMS010000050.1 Salmonella enterica strain PNUSAS351741 SAMN35439866-rid18231363.guided.30, whole genome shotgun sequence	40..477	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJMS010000051.1 Salmonella enterica strain PNUSAS351741 SAMN35439866-rid18231363.guided.34, whole genome shotgun sequence	2726..3562	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJMS010000051.1 Salmonella enterica strain PNUSAS351741 SAMN35439866-rid18231363.guided.34, whole genome shotgun sequence	1923..2726	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOJMS010000036.1 Salmonella enterica strain PNUSAS351741 SAMN35439866-rid18231363.denovo.40, whole genome shotgun sequence	533..1393	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOJMS010000053.1 Salmonella enterica strain PNUSAS351741 SAMN35439866-rid18231363.guided.41, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOJMS010000031.1 Salmonella enterica strain PNUSAS351741 SAMN35439866-rid18231363.denovo.33, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOJMS010000051.1 Salmonella enterica strain PNUSAS351741 SAMN35439866-rid18231363.guided.34, whole genome shotgun sequence	1047..1862	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOJMS010000028.1 Salmonella enterica strain PNUSAS351741 SAMN35439866-rid18231363.denovo.28, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJMS010000052.1 Salmonella enterica strain PNUSAS351741 SAMN35439866-rid18231363.guided.35, whole genome shotgun sequence	1917..3122	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABOJMS010000002.1	555303..556172	99.885	870	0						
GCA_033047455.1_PDT001759709.1_genomic.fna	Salmonella_enterica	0.5219	258.657 KB	7	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOJMU010000002.1 Salmonella enterica strain PNUSAS351742 SAMN35439864-rid18231353.denovo.02, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOJMU010000044.1 Salmonella enterica strain PNUSAS351742 SAMN35439864-rid18231353.guided.36, whole genome shotgun sequence	4107..4544	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJMU010000006.1	99220..100089	99.77	870	0						
GCA_033047475.1_PDT001759708.1_genomic.fna	Salmonella_enterica	0.5225	265.396 KB	7	aroC_13,dnaN_80,hemD_25,hisD_649,purE_40,sucA_58,thrA_4	2440	16:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(Yp)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_80	hemD	100	100	hemD_25	hisD	100	100	hisD_649	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_4	16	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Gaminara		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJMV010000005.1 Salmonella enterica strain PNUSAS351732 SAMN35439863-rid18231343.denovo.05, whole genome shotgun sequence	149293..149730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJMV010000045.1 Salmonella enterica strain PNUSAS351732 SAMN35439863-rid18231343.guided.37, whole genome shotgun sequence	741..1178	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	92.61	230 / 230	ABOJMV010000021.1 Salmonella enterica strain PNUSAS351732 SAMN35439863-rid18231343.denovo.21, whole genome shotgun sequence	52020..52248																																																																	
GCA_033047495.1_PDT001759707.1_genomic.fna	Salmonella_enterica	0.5223	277.605 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJMW010000003.1 Salmonella enterica strain PNUSAS351743 SAMN35439860-rid18231333.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJMW010000043.1 Salmonella enterica strain PNUSAS351743 SAMN35439860-rid18231333.guided.33, whole genome shotgun sequence	2355..2792	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOJMW010000021.1 Salmonella enterica strain PNUSAS351743 SAMN35439860-rid18231333.denovo.21, whole genome shotgun sequence	44718..45360	enterobacteriales	IncFII(S)	100	262 / 262	ABOJMW010000021.1 Salmonella enterica strain PNUSAS351743 SAMN35439860-rid18231333.denovo.21, whole genome shotgun sequence	29372..29633																																																avrA	ABOJMW010000001.1	446731..447599	100	869	0						
GCA_033047515.1_PDT001759705.1_genomic.fna	Salmonella_enterica	0.5214	439.991 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJMY010000001.1 Salmonella enterica strain PNUSAS351740 SAMN35439857-rid18230643.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJMY010000028.1 Salmonella enterica strain PNUSAS351740 SAMN35439857-rid18230643.guided.13, whole genome shotgun sequence	36766..37203	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJMY010000018.1 Salmonella enterica strain PNUSAS351740 SAMN35439857-rid18230643.denovo.19, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABOJMY010000015.1 Salmonella enterica strain PNUSAS351740 SAMN35439857-rid18230643.denovo.16, whole genome shotgun sequence	3704..3965																																																avrA	ABOJMY010000003.1	175109..175978	99.54	870	0						
GCA_033047535.1_PDT001759706.1_genomic.fna	Salmonella_enterica	0.5211	273.33 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJMX010000002.1 Salmonella enterica strain PNUSAS351734 SAMN35439858-rid18231323.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJMX010000054.1 Salmonella enterica strain PNUSAS351734 SAMN35439858-rid18231323.guided.36, whole genome shotgun sequence	1855..2292	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOJMX010000021.1 Salmonella enterica strain PNUSAS351734 SAMN35439858-rid18231323.denovo.21, whole genome shotgun sequence	44729..45371	enterobacteriales	IncFII(S)	100	262 / 262	ABOJMX010000021.1 Salmonella enterica strain PNUSAS351734 SAMN35439858-rid18231323.denovo.21, whole genome shotgun sequence	29383..29644		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJMX010000024.1 Salmonella enterica strain PNUSAS351734 SAMN35439858-rid18231323.denovo.24, whole genome shotgun sequence	31844..31985																																									avrA	ABOJMX010000004.1	209222..210090	100	869	0						
GCA_033047555.1_PDT001759703.1_genomic.fna	Salmonella_enterica	0.5213	382.677 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJMZ010000001.1 Salmonella enterica strain PNUSAS351737 SAMN35439859-rid18231303.denovo.01, whole genome shotgun sequence	482304..482741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJMZ010000034.1 Salmonella enterica strain PNUSAS351737 SAMN35439859-rid18231303.guided.19, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJMZ010000002.1	144915..145784	99.31	870	0						
GCA_033047575.1_PDT001759704.1_genomic.fna	Salmonella_enterica	0.5213	278.184 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJNA010000003.1 Salmonella enterica strain PNUSAS351731 SAMN35439854-rid18231313.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJNA010000048.1 Salmonella enterica strain PNUSAS351731 SAMN35439854-rid18231313.guided.28, whole genome shotgun sequence	2648..3085	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOJNA010000021.1 Salmonella enterica strain PNUSAS351731 SAMN35439854-rid18231313.denovo.21, whole genome shotgun sequence	44719..45361	enterobacteriales	IncFII(S)	100	262 / 262	ABOJNA010000021.1 Salmonella enterica strain PNUSAS351731 SAMN35439854-rid18231313.denovo.21, whole genome shotgun sequence	29373..29634		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOJNA010000017.1 Salmonella enterica strain PNUSAS351731 SAMN35439854-rid18231313.denovo.17, whole genome shotgun sequence	67395..67536																																									avrA	ABOJNA010000001.1	446492..447360	100	869	0						
GCA_033047595.1_PDT001759702.1_genomic.fna	Salmonella_enterica	0.5213	696.117 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJNB010000001.1 Salmonella enterica strain PNUSAS351736 SAMN35439853-rid18231293.denovo.01, whole genome shotgun sequence	647808..648245	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJNB010000020.1 Salmonella enterica strain PNUSAS351736 SAMN35439853-rid18231293.guided.15, whole genome shotgun sequence	3045..3482	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033047615.1_PDT001759700.1_genomic.fna	Salmonella_enterica	0.5211	707.807 KB	3	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJND010000002.1 Salmonella enterica strain PNUSAS351730 SAMN35439862-rid18230633.denovo.02, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJND010000030.1 Salmonella enterica strain PNUSAS351730 SAMN35439862-rid18230633.guided.21, whole genome shotgun sequence	1654..2091	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033047635.1_PDT001759701.1_genomic.fna	Salmonella_enterica	0.521	216.188 KB	7	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJNC010000002.1 Salmonella enterica strain PNUSAS351739 SAMN35439865-rid18231283.denovo.02, whole genome shotgun sequence	415782..416219	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJNC010000046.1 Salmonella enterica strain PNUSAS351739 SAMN35439865-rid18231283.guided.34, whole genome shotgun sequence	957..1394	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033047655.1_PDT001759699.1_genomic.fna	Salmonella_enterica	0.5222	411.847 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJNE010000001.1 Salmonella enterica strain PNUSAS351738 SAMN35439856-rid18231273.denovo.01, whole genome shotgun sequence	784223..784660	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJNE010000022.1 Salmonella enterica strain PNUSAS351738 SAMN35439856-rid18231273.guided.16, whole genome shotgun sequence	4263..4700	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJNE010000002.1	563737..564606	99.77	870	0						
GCA_033047675.1_PDT001759693.1_genomic.fna	Salmonella_enterica	0.5216	438.791 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJNF010000001.1 Salmonella enterica strain PNUSAS351713 SAMN35439792-rid18231223.denovo.01, whole genome shotgun sequence	684259..684696	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJNF010000019.1 Salmonella enterica strain PNUSAS351713 SAMN35439792-rid18231223.guided.10, whole genome shotgun sequence	11818..12255	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJNF010000007.1	148520..149389	99.77	870	0						
GCA_033047695.1_PDT001759692.1_genomic.fna	Salmonella_enterica	0.5221	337.584 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJNG010000001.1 Salmonella enterica strain PNUSAS351710 SAMN35439789-rid18231213.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJNG010000035.1 Salmonella enterica strain PNUSAS351710 SAMN35439789-rid18231213.guided.19, whole genome shotgun sequence	18938..19375	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJNG010000002.1	149828..150697	99.655	870	0						
GCA_033047715.1_PDT001759691.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJNH010000001.1 Salmonella enterica strain PNUSAS351702 SAMN35439767-rid18231203.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJNH010000024.1 Salmonella enterica strain PNUSAS351702 SAMN35439767-rid18231203.guided.14, whole genome shotgun sequence	22735..23172	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJNH010000012.1 Salmonella enterica strain PNUSAS351702 SAMN35439767-rid18231203.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOJNH010000015.1 Salmonella enterica strain PNUSAS351702 SAMN35439767-rid18231203.denovo.18, whole genome shotgun sequence	3382..3643																																																avrA	ABOJNH010000002.1	553636..554505	99.54	870	0						
GCA_033047735.1_PDT001759690.1_genomic.fna	Salmonella_enterica	0.5217	109.437 KB	12	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJNI010000031.1 Salmonella enterica strain PNUSAS351707 SAMN35439794-rid18230613.denovo.32, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJNI010000067.1 Salmonella enterica strain PNUSAS351707 SAMN35439794-rid18230613.guided.51, whole genome shotgun sequence	10144..10581	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABOJNI010000037.1 Salmonella enterica strain PNUSAS351707 SAMN35439794-rid18230613.denovo.38, whole genome shotgun sequence	26921..27180																																																																	
GCA_033047755.1_PDT001759689.1_genomic.fna	Salmonella_enterica	0.5207	401.357 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJNJ010000001.1 Salmonella enterica strain PNUSAS351696 SAMN35439761-rid18231193.denovo.01, whole genome shotgun sequence	645054..645491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJNJ010000023.1 Salmonella enterica strain PNUSAS351696 SAMN35439761-rid18231193.guided.17, whole genome shotgun sequence	34582..35019	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJNJ010000003.1	514772..515640	99.54	870	0						
GCA_033047775.1_PDT001759688.1_genomic.fna	Salmonella_enterica	0.5194	761.836 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	10	aac(6')-Iaa,aph(3')-Ia,aac(3)-VIa,aadA24,aac(6')-Iaa,aac(3)-VIa,aph(3')-Ia,aadA24,mph(A),mph(A),floR,floR,sul1,sul1,tet(A),tet(M),tet(M),tet(A),dfrA1,dfrA1	1	parC_p.T57S	3	IncHI2,IncHI2A,IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJNK010000001.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.denovo.01, whole genome shotgun sequence	638994..639431	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.75	816/816	ABOJNK010000014.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.denovo.17, whole genome shotgun sequence	28007..28822	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU855787	aac(3)-VIa	100	903/903	ABOJNK010000022.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.denovo.25, whole genome shotgun sequence	983..1885	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA24	100	780/780	ABOJNK010000022.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.denovo.25, whole genome shotgun sequence	40..819	Spectinomycin, Streptomycin	DQ677333	aac(6')-Iaa	99.54	438/438	ABOJNK010000040.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.guided.16, whole genome shotgun sequence	14797..15234	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOJNK010000045.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.guided.36, whole genome shotgun sequence	37..939	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aph(3')-Ia	99.75	816/816	ABOJNK010000049.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.guided.42, whole genome shotgun sequence	107..922	Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU855787	aadA24	100	780/780	ABOJNK010000050.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.guided.44, whole genome shotgun sequence	57..836	Spectinomycin, Streptomycin	DQ677333	mph(A)	99.89	906/906	ABOJNK010000025.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.denovo.30, whole genome shotgun sequence	2257..3162	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOJNK010000042.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.guided.29, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOJNK010000019.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.denovo.22, whole genome shotgun sequence	5077..6290	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOJNK010000041.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.guided.28, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOJNK010000046.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.guided.39, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338	sul1	99.88	840/840	ABOJNK010000047.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.guided.40, whole genome shotgun sequence	378..1217	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOJNK010000019.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.denovo.22, whole genome shotgun sequence	3202..4476	Doxycycline, Tetracycline	AF534183	tet(M)	99.17	1920/1920	ABOJNK010000024.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.denovo.27, whole genome shotgun sequence	1555..3474	Doxycycline, Tetracycline, Minocycline	U58985	tet(M)	99.17	1920/1920	ABOJNK010000043.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.guided.33, whole genome shotgun sequence	17..1936	Doxycycline, Tetracycline, Minocycline	U58985	tet(A)	100	1275/1275	ABOJNK010000044.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.guided.35, whole genome shotgun sequence	1022..2296	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOJNK010000019.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.denovo.22, whole genome shotgun sequence	1571..2044	Trimethoprim	X00926	dfrA1	100	474/474	ABOJNK010000048.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.guided.41, whole genome shotgun sequence	58..531	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOJNK010000008.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.denovo.08, whole genome shotgun sequence	67522..67848	enterobacteriales	IncHI2A	99.52	630 / 630	ABOJNK010000008.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.denovo.08, whole genome shotgun sequence	87168..87797		enterobacteriales	IncR	100	251 / 251	ABOJNK010000017.1 Salmonella enterica strain PNUSAS351693 SAMN35439758-rid18231183.denovo.20, whole genome shotgun sequence	4434..4684																																									avrA	ABOJNK010000002.1	586519..587388	99.77	870	0						
GCA_033047795.1_PDT001759687.1_genomic.fna	Salmonella_enterica	0.521	358.562 KB	3	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJNL010000001.1 Salmonella enterica strain PNUSAS351699 SAMN35439764-rid18231173.denovo.01, whole genome shotgun sequence	1291306..1291743	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJNL010000028.1 Salmonella enterica strain PNUSAS351699 SAMN35439764-rid18231173.guided.11, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_033047815.1_PDT001759686.1_genomic.fna	Salmonella_enterica	0.52	430.193 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJNM010000001.1 Salmonella enterica strain PNUSAS351695 SAMN35439760-rid18231163.denovo.01, whole genome shotgun sequence	563826..564263	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJNM010000026.1 Salmonella enterica strain PNUSAS351695 SAMN35439760-rid18231163.guided.19, whole genome shotgun sequence	9741..10178	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJNM010000010.1	140199..141067	99.195	870	0						
GCA_033047835.1_PDT001759685.1_genomic.fna	Salmonella_enterica	0.5216	397.496 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJNN010000001.1 Salmonella enterica strain PNUSAS351701 SAMN35439766-rid18230603.denovo.01, whole genome shotgun sequence	834178..834615	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJNN010000024.1 Salmonella enterica strain PNUSAS351701 SAMN35439766-rid18230603.guided.12, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJNN010000008.1	129915..130784	98.966	870	0						
GCA_033047855.1_PDT001759683.1_genomic.fna	Salmonella_enterica	0.5209	490.138 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJNP010000001.1 Salmonella enterica strain PNUSAS351698 SAMN35439763-rid18231143.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJNP010000025.1 Salmonella enterica strain PNUSAS351698 SAMN35439763-rid18231143.guided.15, whole genome shotgun sequence	24477..24914	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJNP010000013.1 Salmonella enterica strain PNUSAS351698 SAMN35439763-rid18231143.denovo.14, whole genome shotgun sequence	40632..41274	enterobacteriales	IncFII(S)	100	262 / 262	ABOJNP010000016.1 Salmonella enterica strain PNUSAS351698 SAMN35439763-rid18231143.denovo.19, whole genome shotgun sequence	3339..3600																																																avrA	ABOJNP010000002.1	585348..586217	99.54	870	0						
GCA_033047875.1_PDT001759682.1_genomic.fna	Salmonella_enterica	0.5195	204.123 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	7	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-15,blaTEM-1B,blaCTX-M-15,blaTEM-1B,catA1,catA1,catA1,qnrS1,qnrS1,sul1,sul1,dfrA7,dfrA7	1	gyrA_p.S83F	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOJNQ010000012.1 Salmonella enterica strain PNUSAS351714 SAMN35439793-rid18231133.denovo.12, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOJNQ010000059.1 Salmonella enterica strain PNUSAS351714 SAMN35439793-rid18231133.guided.36, whole genome shotgun sequence	1786..2220	Amikacin, Tobramycin	NC_003197	blaCTX-M-15	100	876/876	ABOJNQ010000036.1 Salmonella enterica strain PNUSAS351714 SAMN35439793-rid18231133.denovo.39, whole genome shotgun sequence	14193..15068	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	ABOJNQ010000036.1 Salmonella enterica strain PNUSAS351714 SAMN35439793-rid18231133.denovo.39, whole genome shotgun sequence	17890..18750	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCTX-M-15	100	876/876	ABOJNQ010000060.1 Salmonella enterica strain PNUSAS351714 SAMN35439793-rid18231133.guided.40, whole genome shotgun sequence	2244..3119	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaTEM-1B	100	861/861	ABOJNQ010000064.1 Salmonella enterica strain PNUSAS351714 SAMN35439793-rid18231133.guided.58, whole genome shotgun sequence	578..1438	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	ABOJNQ010000039.1 Salmonella enterica strain PNUSAS351714 SAMN35439793-rid18231133.denovo.43, whole genome shotgun sequence	8088..8747	Chloramphenicol	V00622	catA1	99.85	660/660	ABOJNQ010000062.1 Salmonella enterica strain PNUSAS351714 SAMN35439793-rid18231133.guided.56, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	catA1	99.7	660/660	ABOJNQ010000063.1 Salmonella enterica strain PNUSAS351714 SAMN35439793-rid18231133.guided.57, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	qnrS1	100	657/657	ABOJNQ010000036.1 Salmonella enterica strain PNUSAS351714 SAMN35439793-rid18231133.denovo.39, whole genome shotgun sequence	8896..9552	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOJNQ010000060.1 Salmonella enterica strain PNUSAS351714 SAMN35439793-rid18231133.guided.40, whole genome shotgun sequence	7760..8416	Ciprofloxacin	AB187515	sul1	100	840/840	ABOJNQ010000039.1 Salmonella enterica strain PNUSAS351714 SAMN35439793-rid18231133.denovo.43, whole genome shotgun sequence	181..1020	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJNQ010000061.1 Salmonella enterica strain PNUSAS351714 SAMN35439793-rid18231133.guided.49, whole genome shotgun sequence	4845..5684	Sulfamethoxazole	U12338	dfrA7	100	474/474	ABOJNQ010000039.1 Salmonella enterica strain PNUSAS351714 SAMN35439793-rid18231133.denovo.43, whole genome shotgun sequence	1591..2064	Trimethoprim	AB161450	dfrA7	100	474/474	ABOJNQ010000061.1 Salmonella enterica strain PNUSAS351714 SAMN35439793-rid18231133.guided.49, whole genome shotgun sequence	3801..4274	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																															gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_033047895.1_PDT001759681.1_genomic.fna	Salmonella_enterica	0.5146	371.777 KB	5	aroC_88,dnaN_26,hemD_30,hisD_87,purE_21,sucA_87,thrA_80	243	61:l,v:1,5,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_87	purE	100	100	purE_21	sucA	100	100	sucA_87	thrA	100	100	thrA_80	61	l,v	1,5,7	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:l,v:1,5,7		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJNR010000003.1 Salmonella enterica strain PNUSAS351712 SAMN35439791-rid18231123.denovo.03, whole genome shotgun sequence	127423..127860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJNR010000030.1 Salmonella enterica strain PNUSAS351712 SAMN35439791-rid18231123.guided.17, whole genome shotgun sequence	47412..47849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJNR010000001.1	144599..145468	96.437	870	0						
GCA_033047915.1_PDT001759680.1_genomic.fna	Salmonella_enterica	0.5202	490.152 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJNS010000001.1 Salmonella enterica strain PNUSAS351697 SAMN35439762-rid18230593.denovo.01, whole genome shotgun sequence	774424..774861	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJNS010000023.1 Salmonella enterica strain PNUSAS351697 SAMN35439762-rid18230593.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJNS010000012.1 Salmonella enterica strain PNUSAS351697 SAMN35439762-rid18230593.denovo.14, whole genome shotgun sequence	40524..41166	enterobacteriales	IncFII(S)	100	262 / 262	ABOJNS010000016.1 Salmonella enterica strain PNUSAS351697 SAMN35439762-rid18230593.denovo.19, whole genome shotgun sequence	3415..3676		enterobacteriales	IncX1	98.93	374 / 374	ABOJNS010000013.1 Salmonella enterica strain PNUSAS351697 SAMN35439762-rid18230593.denovo.15, whole genome shotgun sequence	32011..32384																																									avrA	ABOJNS010000002.1	553543..554412	99.54	870	0						
GCA_033047935.1_PDT001759684.1_genomic.fna	Salmonella_enterica	0.5206	234.026 KB	6	aroC_18,dnaN_14,hemD_12,hisD_9,purE_5,sucA_18,thrA_21	36	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_14	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_18	thrA	100	100	thrA_21	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJNO010000001.1 Salmonella enterica strain PNUSAS351709 SAMN35439788-rid18231153.denovo.01, whole genome shotgun sequence	287867..288304	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJNO010000037.1 Salmonella enterica strain PNUSAS351709 SAMN35439788-rid18231153.guided.17, whole genome shotgun sequence	8335..8772	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJNO010000002.1	174490..175359	99.885	870	0						
GCA_033047955.1_PDT001759679.1_genomic.fna	Salmonella_enterica	0.5211	523.99 KB	4	aroC_41,dnaN_42,hemD_43,hisD_733,purE_9,sucA_558,thrA_2	2881	8:d:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),ColpVC	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_733	purE	100	100	purE_9	sucA	100	100	sucA_558	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJNT010000003.1 Salmonella enterica strain PNUSAS351703 SAMN35439768-rid18231113.denovo.03, whole genome shotgun sequence	477699..478136	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJNT010000028.1 Salmonella enterica strain PNUSAS351703 SAMN35439768-rid18231113.guided.17, whole genome shotgun sequence	4351..4788	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOJNT010000021.1 Salmonella enterica strain PNUSAS351703 SAMN35439768-rid18231113.denovo.22, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOJNT010000030.1 Salmonella enterica strain PNUSAS351703 SAMN35439768-rid18231113.guided.24, whole genome shotgun sequence	687..1331	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOJNT010000017.1 Salmonella enterica strain PNUSAS351703 SAMN35439768-rid18231113.denovo.18, whole genome shotgun sequence	611..741	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJNT010000021.1 Salmonella enterica strain PNUSAS351703 SAMN35439768-rid18231113.denovo.22, whole genome shotgun sequence	1150..1280		enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJNT010000030.1 Salmonella enterica strain PNUSAS351703 SAMN35439768-rid18231113.guided.24, whole genome shotgun sequence	31..161		enterobacteriales	ColpVC	97.38	191 / 193	ABOJNT010000023.1 Salmonella enterica strain PNUSAS351703 SAMN35439768-rid18231113.denovo.26, whole genome shotgun sequence	1517..1707																																		avrA	ABOJNT010000004.1	139987..140856	99.425	870	0						
GCA_033047975.1_PDT001759677.1_genomic.fna	Salmonella_enterica	0.5207	490.179 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJNV010000001.1 Salmonella enterica strain PNUSAS351706 SAMN35439771-rid18230583.denovo.01, whole genome shotgun sequence	162520..162957	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJNV010000022.1 Salmonella enterica strain PNUSAS351706 SAMN35439771-rid18230583.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJNV010000013.1 Salmonella enterica strain PNUSAS351706 SAMN35439771-rid18230583.denovo.15, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOJNV010000016.1 Salmonella enterica strain PNUSAS351706 SAMN35439771-rid18230583.denovo.19, whole genome shotgun sequence	3389..3650																																																avrA	ABOJNV010000002.1	585474..586343	99.54	870	0						
GCA_033047995.1_PDT001759678.1_genomic.fna	Salmonella_enterica	0.5208	519.242 KB	4	aroC_104,dnaN_100,hemD_54,hisD_78,purE_104,sucA_9,thrA_48	292	8:z4,z24:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_104	dnaN	100	100	dnaN_100	hemD	100	100	hemD_54	hisD	100	100	hisD_78	purE	100	100	purE_104	sucA	100	100	sucA_9	thrA	100	100	thrA_48	8	z4,z24	-	Salmonella enterica subspecies enterica (subspecies I)	Albany or Duesseldorf	The predicted serotypes share the same general formula: 8:z4,z24:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJNU010000002.1 Salmonella enterica strain PNUSAS351690 SAMN35439755-rid18231103.denovo.02, whole genome shotgun sequence	483344..483781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJNU010000020.1 Salmonella enterica strain PNUSAS351690 SAMN35439755-rid18231103.guided.13, whole genome shotgun sequence	9715..10152	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJNU010000001.1	145655..146524	99.08	870	0						
GCA_033048015.1_PDT001759676.1_genomic.fna	Salmonella_enterica	0.521	407.991 KB	5	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJNW010000002.1 Salmonella enterica strain PNUSAS351694 SAMN35439759-rid18231093.denovo.02, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJNW010000036.1 Salmonella enterica strain PNUSAS351694 SAMN35439759-rid18231093.guided.23, whole genome shotgun sequence	9310..9747	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOJNW010000027.1 Salmonella enterica strain PNUSAS351694 SAMN35439759-rid18231093.denovo.31, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOJNW010000038.1 Salmonella enterica strain PNUSAS351694 SAMN35439759-rid18231093.guided.30, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJNW010000027.1 Salmonella enterica strain PNUSAS351694 SAMN35439759-rid18231093.denovo.31, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJNW010000038.1 Salmonella enterica strain PNUSAS351694 SAMN35439759-rid18231093.guided.30, whole genome shotgun sequence	2044..2174																																																avrA	ABOJNW010000010.1	36962..37831	99.425	870	0						
GCA_033048035.1_PDT001759670.1_genomic.fna	Salmonella_enterica	0.5209	282.217 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	0		2	IncC,IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJOA010000001.1 Salmonella enterica strain PNUSAS351691 SAMN35439756-rid18230553.denovo.01, whole genome shotgun sequence	569503..569940	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJOA010000017.1 Salmonella enterica strain PNUSAS351691 SAMN35439756-rid18230553.denovo.17, whole genome shotgun sequence	80667..81503	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJOA010000017.1 Salmonella enterica strain PNUSAS351691 SAMN35439756-rid18230553.denovo.17, whole genome shotgun sequence	79864..80667	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOJOA010000043.1 Salmonella enterica strain PNUSAS351691 SAMN35439756-rid18230553.guided.33, whole genome shotgun sequence	3044..3880	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJOA010000043.1 Salmonella enterica strain PNUSAS351691 SAMN35439756-rid18230553.guided.33, whole genome shotgun sequence	2241..3044	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOJOA010000044.1 Salmonella enterica strain PNUSAS351691 SAMN35439756-rid18230553.guided.34, whole genome shotgun sequence	5262..5699	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOJOA010000017.1 Salmonella enterica strain PNUSAS351691 SAMN35439756-rid18230553.denovo.17, whole genome shotgun sequence	49502..50647	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOJOA010000041.1 Salmonella enterica strain PNUSAS351691 SAMN35439756-rid18230553.guided.29, whole genome shotgun sequence	24835..25980	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.27	1214/1215	ABOJOA010000017.1 Salmonella enterica strain PNUSAS351691 SAMN35439756-rid18230553.denovo.17, whole genome shotgun sequence	84639..85852	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABOJOA010000045.1 Salmonella enterica strain PNUSAS351691 SAMN35439756-rid18230553.guided.36, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOJOA010000017.1 Salmonella enterica strain PNUSAS351691 SAMN35439756-rid18230553.denovo.17, whole genome shotgun sequence	78988..79803	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOJOA010000043.1 Salmonella enterica strain PNUSAS351691 SAMN35439756-rid18230553.guided.33, whole genome shotgun sequence	1365..2180	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOJOA010000017.1 Salmonella enterica strain PNUSAS351691 SAMN35439756-rid18230553.denovo.17, whole genome shotgun sequence	82764..84038	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOJOA010000043.1 Salmonella enterica strain PNUSAS351691 SAMN35439756-rid18230553.guided.33, whole genome shotgun sequence	5141..6415	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncC	100	417 / 417	ABOJOA010000022.1 Salmonella enterica strain PNUSAS351691 SAMN35439756-rid18230553.denovo.23, whole genome shotgun sequence	17493..17909	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJOA010000018.1 Salmonella enterica strain PNUSAS351691 SAMN35439756-rid18230553.denovo.18, whole genome shotgun sequence	71906..72047																																																avrA	ABOJOA010000004.1	174926..175795	99.885	870	0						
GCA_033048055.1_PDT001759674.1_genomic.fna	Salmonella_enterica	0.5215	213.669 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		4	Col440I,IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJNZ010000001.1 Salmonella enterica strain PNUSAS351655 SAMN35439652-rid18231083.denovo.01, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJNZ010000079.1 Salmonella enterica strain PNUSAS351655 SAMN35439652-rid18231083.guided.29, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOJNZ010000038.1 Salmonella enterica strain PNUSAS351655 SAMN35439652-rid18231083.denovo.40, whole genome shotgun sequence	7117..8322	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJNZ010000081.1 Salmonella enterica strain PNUSAS351655 SAMN35439652-rid18231083.guided.44, whole genome shotgun sequence	2979..4184	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col440I	93.64	110 / 114	ABOJNZ010000052.1 Salmonella enterica strain PNUSAS351655 SAMN35439652-rid18231083.denovo.56, whole genome shotgun sequence	1566..1675	enterobacteriales	IncFIB(S)	100	643 / 643	ABOJNZ010000017.1 Salmonella enterica strain PNUSAS351655 SAMN35439652-rid18231083.denovo.17, whole genome shotgun sequence	14681..15323		enterobacteriales	IncFII(S)	100	262 / 262	ABOJNZ010000017.1 Salmonella enterica strain PNUSAS351655 SAMN35439652-rid18231083.denovo.17, whole genome shotgun sequence	30408..30669		enterobacteriales	IncI1-I(Alpha)	95.65	138 / 142	ABOJNZ010000034.1 Salmonella enterica strain PNUSAS351655 SAMN35439652-rid18231083.denovo.36, whole genome shotgun sequence	17345..17480		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJNZ010000038.1 Salmonella enterica strain PNUSAS351655 SAMN35439652-rid18231083.denovo.40, whole genome shotgun sequence	590..731																											avrA	ABOJNZ010000009.1	39467..40335	100	869	0						
GCA_033048075.1_PDT001759675.1_genomic.fna	Salmonella_enterica	0.5212	652.207 KB	3	aroC_11,dnaN_10,hemD_13,hisD_13,purE_10,sucA_13,thrA_4	20	4:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJNX010000002.1 Salmonella enterica strain PNUSAS351705 SAMN35439770-rid18230573.denovo.02, whole genome shotgun sequence	624908..625345	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.96	393/438	ABOJNX010000023.1 Salmonella enterica strain PNUSAS351705 SAMN35439770-rid18230573.guided.17, whole genome shotgun sequence	1..393	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABOJNX010000004.1 Salmonella enterica strain PNUSAS351705 SAMN35439770-rid18230573.denovo.04, whole genome shotgun sequence	155083..155505	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABOJNX010000020.1 Salmonella enterica strain PNUSAS351705 SAMN35439770-rid18230573.guided.09, whole genome shotgun sequence	131576..131998	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033048095.1_PDT001759673.1_genomic.fna	Salmonella_enterica	0.5212	489.916 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJNY010000001.1 Salmonella enterica strain PNUSAS351692 SAMN35439757-rid18230563.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJNY010000024.1 Salmonella enterica strain PNUSAS351692 SAMN35439757-rid18230563.guided.18, whole genome shotgun sequence	5621..6058	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJNY010000012.1 Salmonella enterica strain PNUSAS351692 SAMN35439757-rid18230563.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOJNY010000016.1 Salmonella enterica strain PNUSAS351692 SAMN35439757-rid18230563.denovo.19, whole genome shotgun sequence	3352..3613																																																avrA	ABOJNY010000002.1	584132..585001	99.54	870	0						
GCA_033048115.1_PDT001759669.1_genomic.fna	Salmonella_enterica	0.5209	492.596 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJOB010000001.1 Salmonella enterica strain PNUSAS351700 SAMN35439765-rid18231053.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJOB010000021.1 Salmonella enterica strain PNUSAS351700 SAMN35439765-rid18231053.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJOB010000011.1 Salmonella enterica strain PNUSAS351700 SAMN35439765-rid18231053.denovo.13, whole genome shotgun sequence	40536..41178	enterobacteriales	IncFII(S)	100	262 / 262	ABOJOB010000014.1 Salmonella enterica strain PNUSAS351700 SAMN35439765-rid18231053.denovo.17, whole genome shotgun sequence	3402..3663																																																avrA	ABOJOB010000002.1	553636..554505	99.54	870	0						
GCA_033048135.1_PDT001759664.1_genomic.fna	Salmonella_enterica	0.5214	97.663 KB	15	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJOD010000021.1 Salmonella enterica strain PNUSAS351672 SAMN35439655-rid18231033.denovo.21, whole genome shotgun sequence	25625..26062	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJOD010000083.1 Salmonella enterica strain PNUSAS351672 SAMN35439655-rid18231033.guided.63, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABOJOD010000030.1 Salmonella enterica strain PNUSAS351672 SAMN35439655-rid18231033.denovo.30, whole genome shotgun sequence	48112..48754	enterobacteriales	IncFII(S)	100	262 / 262	ABOJOD010000030.1 Salmonella enterica strain PNUSAS351672 SAMN35439655-rid18231033.denovo.30, whole genome shotgun sequence	3859..4120		enterobacteriales	IncX1	98.66	374 / 374	ABOJOD010000062.1 Salmonella enterica strain PNUSAS351672 SAMN35439655-rid18231033.denovo.64, whole genome shotgun sequence	6809..7182																																									avrA	ABOJOD010000009.1	43554..44423	99.54	870	0						
GCA_033048155.1_PDT001759666.1_genomic.fna	Salmonella_enterica	0.5208	455.786 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJOC010000005.1 Salmonella enterica strain PNUSAS351663 SAMN35439649-rid18231043.denovo.05, whole genome shotgun sequence	162087..162524	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABOJOC010000023.1 Salmonella enterica strain PNUSAS351663 SAMN35439649-rid18231043.denovo.30, whole genome shotgun sequence	86..916	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABOJOC010000023.1 Salmonella enterica strain PNUSAS351663 SAMN35439649-rid18231043.denovo.30, whole genome shotgun sequence	922..1725	Streptomycin	AF321551	aac(6')-Iaa	96.35	438/438	ABOJOC010000031.1 Salmonella enterica strain PNUSAS351663 SAMN35439649-rid18231043.guided.15, whole genome shotgun sequence	32034..32471	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	831/831	ABOJOC010000036.1 Salmonella enterica strain PNUSAS351663 SAMN35439649-rid18231043.guided.29, whole genome shotgun sequence	842..1672	Streptomycin	CP000971	aph(3'')-Ib	100	804/804	ABOJOC010000036.1 Salmonella enterica strain PNUSAS351663 SAMN35439649-rid18231043.guided.29, whole genome shotgun sequence	33..836	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOJOC010000019.1 Salmonella enterica strain PNUSAS351663 SAMN35439649-rid18231043.denovo.23, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOJOC010000033.1 Salmonella enterica strain PNUSAS351663 SAMN35439649-rid18231043.guided.22, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOJOC010000017.1 Salmonella enterica strain PNUSAS351663 SAMN35439649-rid18231043.denovo.19, whole genome shotgun sequence	28..843	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOJOC010000034.1 Salmonella enterica strain PNUSAS351663 SAMN35439649-rid18231043.guided.25, whole genome shotgun sequence	3554..4369	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOJOC010000021.1 Salmonella enterica strain PNUSAS351663 SAMN35439649-rid18231043.denovo.27, whole genome shotgun sequence	947..2146	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJOC010000035.1 Salmonella enterica strain PNUSAS351663 SAMN35439649-rid18231043.guided.26, whole genome shotgun sequence	988..2187	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJOC010000014.1 Salmonella enterica strain PNUSAS351663 SAMN35439649-rid18231043.denovo.16, whole genome shotgun sequence	32997..33639	enterobacteriales	IncFII(S)	100	262 / 262	ABOJOC010000018.1 Salmonella enterica strain PNUSAS351663 SAMN35439649-rid18231043.denovo.20, whole genome shotgun sequence	4078..4339		enterobacteriales	IncX1	95.76	377 / 377	ABOJOC010000017.1 Salmonella enterica strain PNUSAS351663 SAMN35439649-rid18231043.denovo.19, whole genome shotgun sequence	11132..11508																																									avrA	ABOJOC010000001.1	553024..553893	99.54	870	0						
GCA_033048195.1_PDT001759659.1_genomic.fna	Salmonella_enterica	0.5223	227.398 KB	8	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOJOF010000002.1 Salmonella enterica strain PNUSAS351651 SAMN35439646-rid18231003.denovo.02, whole genome shotgun sequence	149743..150180	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJOF010000055.1 Salmonella enterica strain PNUSAS351651 SAMN35439646-rid18231003.guided.39, whole genome shotgun sequence	1147..1584	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOJOF010000033.1 Salmonella enterica strain PNUSAS351651 SAMN35439646-rid18231003.denovo.35, whole genome shotgun sequence	2209..2339	enterobacteriales	Col440I	93.81	113 / 114	ABOJOF010000036.1 Salmonella enterica strain PNUSAS351651 SAMN35439646-rid18231003.denovo.38, whole genome shotgun sequence	2528..2639																																																avrA	ABOJOF010000001.1	406032..406900	99.425	870	0						
GCA_033048215.1_PDT001759658.1_genomic.fna	Salmonella_enterica	0.5217	122.86 KB	11	aroC_10,dnaN_7,hemD_12,hisD_9,purE_110,sucA_9,thrA_2	302	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_110	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJOG010000001.1 Salmonella enterica strain PNUSAS351673 SAMN35439654-rid18230493.denovo.01, whole genome shotgun sequence	207029..207466	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJOG010000069.1 Salmonella enterica strain PNUSAS351673 SAMN35439654-rid18230493.guided.49, whole genome shotgun sequence	8058..8495	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOJOG010000017.1 Salmonella enterica strain PNUSAS351673 SAMN35439654-rid18230493.denovo.17, whole genome shotgun sequence	6821..7463	enterobacteriales	IncFII(S)	100	262 / 262	ABOJOG010000017.1 Salmonella enterica strain PNUSAS351673 SAMN35439654-rid18230493.denovo.17, whole genome shotgun sequence	22548..22809																																																avrA	ABOJOG010000004.1	108516..109385	99.885	870	0						
GCA_033048235.1_PDT001759654.1_genomic.fna	Salmonella_enterica	0.5229	192.913 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJOH010000001.1 Salmonella enterica strain PNUSAS351662 SAMN35439648-rid18230973.denovo.01, whole genome shotgun sequence	572209..572646	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJOH010000041.1 Salmonella enterica strain PNUSAS351662 SAMN35439648-rid18230973.guided.35, whole genome shotgun sequence	1647..2084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJOH010000002.1	149610..150479	99.655	870	0						
GCA_033048245.1_PDT001759643.1_genomic.fna	Salmonella_enterica	0.522	267.145 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJOI010000001.1 Salmonella enterica strain PNUSAS351670 SAMN35439657-rid18230423.denovo.01, whole genome shotgun sequence	388982..389419	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJOI010000045.1 Salmonella enterica strain PNUSAS351670 SAMN35439657-rid18230423.guided.29, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJOI010000002.1	563798..564667	99.77	870	0						
GCA_033048275.1_PDT001759642.1_genomic.fna	Salmonella_enterica	0.5212	462.666 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOJOJ010000001.1 Salmonella enterica strain PNUSAS351665 SAMN35439650-rid18230913.denovo.01, whole genome shotgun sequence	223511..223948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJOJ010000031.1 Salmonella enterica strain PNUSAS351665 SAMN35439650-rid18230913.guided.22, whole genome shotgun sequence	5..442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOJOJ010000016.1 Salmonella enterica strain PNUSAS351665 SAMN35439650-rid18230913.denovo.16, whole genome shotgun sequence	2465..2998																																																						avrA	ABOJOJ010000002.1	149573..150441	99.425	870	0						
GCA_033048295.1_PDT001759632.1_genomic.fna	Salmonella_enterica	0.5196	214.302 KB	8	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOJOL010000004.1 Salmonella enterica strain PNUSAS351652 SAMN35439631-rid18230833.denovo.04, whole genome shotgun sequence	147878..148315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOJOL010000072.1 Salmonella enterica strain PNUSAS351652 SAMN35439631-rid18230833.guided.29, whole genome shotgun sequence	8554..8991	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOJOL010000009.1 Salmonella enterica strain PNUSAS351652 SAMN35439631-rid18230833.denovo.09, whole genome shotgun sequence	2742..3164	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOJOL010000074.1 Salmonella enterica strain PNUSAS351652 SAMN35439631-rid18230833.guided.42, whole genome shotgun sequence	3762..4184	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.08	131 / 131	ABOJOL010000041.1 Salmonella enterica strain PNUSAS351652 SAMN35439631-rid18230833.denovo.44, whole genome shotgun sequence	709..839	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOJOL010000045.1 Salmonella enterica strain PNUSAS351652 SAMN35439631-rid18230833.denovo.49, whole genome shotgun sequence	186..316		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJOL010000033.1 Salmonella enterica strain PNUSAS351652 SAMN35439631-rid18230833.denovo.34, whole genome shotgun sequence	12686..12827																																									avrA	ABOJOL010000005.1	39461..40330	99.655	870	0						
GCA_033048315.1_PDT001759640.1_genomic.fna	Salmonella_enterica	0.5209	405.327 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJOK010000001.1 Salmonella enterica strain PNUSAS351661 SAMN35439653-rid18230893.denovo.01, whole genome shotgun sequence	477389..477826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJOK010000049.1 Salmonella enterica strain PNUSAS351661 SAMN35439653-rid18230893.guided.25, whole genome shotgun sequence	23805..24242	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJOK010000008.1	150722..151592	99.196	871	0						
GCA_033048335.1_PDT001759625.1_genomic.fna	Salmonella_enterica	0.5212	698.687 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOJOM010000001.1 Salmonella enterica strain PNUSAS351664 SAMN35439638-rid18230773.denovo.01, whole genome shotgun sequence	510589..511026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOJOM010000023.1 Salmonella enterica strain PNUSAS351664 SAMN35439638-rid18230773.guided.17, whole genome shotgun sequence	15481..15918	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOJOM010000012.1 Salmonella enterica strain PNUSAS351664 SAMN35439638-rid18230773.denovo.13, whole genome shotgun sequence	34956..35489																																																						avrA	ABOJOM010000002.1	576132..577000	99.425	870	0						
GCA_033048355.1_PDT001759624.1_genomic.fna	Salmonella_enterica	0.5203	234.9 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJON010000001.1 Salmonella enterica strain PNUSAS351650 SAMN35439647-rid18230763.denovo.01, whole genome shotgun sequence	727905..728342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJON010000044.1 Salmonella enterica strain PNUSAS351650 SAMN35439647-rid18230763.guided.28, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJON010000002.1	550819..551688	99.195	870	0						
GCA_033048375.1_PDT001759622.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJOP010000001.1 Salmonella enterica strain PNUSAS351704 SAMN35439769-rid18230373.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJOP010000024.1 Salmonella enterica strain PNUSAS351704 SAMN35439769-rid18230373.guided.20, whole genome shotgun sequence	2090..2527	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJOP010000012.1 Salmonella enterica strain PNUSAS351704 SAMN35439769-rid18230373.denovo.12, whole genome shotgun sequence	40533..41175	enterobacteriales	IncFII(S)	100	262 / 262	ABOJOP010000016.1 Salmonella enterica strain PNUSAS351704 SAMN35439769-rid18230373.denovo.18, whole genome shotgun sequence	3428..3689																																																avrA	ABOJOP010000002.1	553636..554505	99.54	870	0						
GCA_033048395.1_PDT001759615.1_genomic.fna	Salmonella_enterica	0.5209	489.739 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJOQ010000001.1 Salmonella enterica strain PNUSAS351656 SAMN35439651-rid18230303.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJOQ010000029.1 Salmonella enterica strain PNUSAS351656 SAMN35439651-rid18230303.guided.19, whole genome shotgun sequence	32244..32681	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJOQ010000017.1 Salmonella enterica strain PNUSAS351656 SAMN35439651-rid18230303.denovo.17, whole genome shotgun sequence	48335..48977	enterobacteriales	IncFII(S)	100	262 / 262	ABOJOQ010000017.1 Salmonella enterica strain PNUSAS351656 SAMN35439651-rid18230303.denovo.17, whole genome shotgun sequence	4082..4343		enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	ABOJOQ010000015.1 Salmonella enterica strain PNUSAS351656 SAMN35439651-rid18230303.denovo.15, whole genome shotgun sequence	80415..80554																																									avrA	ABOJOQ010000002.1	505310..506179	99.54	870	0						
GCA_033048415.1_PDT001759621.1_genomic.fna	Salmonella_enterica	0.5212	489.869 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJOO010000001.1 Salmonella enterica strain PNUSAS351711 SAMN35439790-rid18230363.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJOO010000024.1 Salmonella enterica strain PNUSAS351711 SAMN35439790-rid18230363.guided.17, whole genome shotgun sequence	82..519	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJOO010000012.1 Salmonella enterica strain PNUSAS351711 SAMN35439790-rid18230363.denovo.13, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	ABOJOO010000015.1 Salmonella enterica strain PNUSAS351711 SAMN35439790-rid18230363.denovo.18, whole genome shotgun sequence	3395..3656																																																avrA	ABOJOO010000002.1	553678..554547	99.54	870	0						
GCA_033048435.1_PDT001759598.1_genomic.fna	Salmonella_enterica	0.5206	469.82 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJOU010000001.1 Salmonella enterica strain PNUSAS351654 SAMN35439636-rid18230133.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJOU010000028.1 Salmonella enterica strain PNUSAS351654 SAMN35439636-rid18230133.guided.20, whole genome shotgun sequence	23361..23798	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJOU010000017.1 Salmonella enterica strain PNUSAS351654 SAMN35439636-rid18230133.denovo.17, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOJOU010000017.1 Salmonella enterica strain PNUSAS351654 SAMN35439636-rid18230133.denovo.17, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABOJOU010000018.1 Salmonella enterica strain PNUSAS351654 SAMN35439636-rid18230133.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABOJOU010000012.1	39465..40334	99.54	870	0						
GCA_033048455.1_PDT001759596.1_genomic.fna	Salmonella_enterica	0.5211	303.961 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJOV010000001.1 Salmonella enterica strain PNUSAS351659 SAMN35439633-rid18230113.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJOV010000031.1 Salmonella enterica strain PNUSAS351659 SAMN35439633-rid18230113.guided.23, whole genome shotgun sequence	10017..10454	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJOV010000019.1 Salmonella enterica strain PNUSAS351659 SAMN35439633-rid18230113.denovo.19, whole genome shotgun sequence	48660..49302	enterobacteriales	IncFII(S)	100	262 / 262	ABOJOV010000019.1 Salmonella enterica strain PNUSAS351659 SAMN35439633-rid18230113.denovo.19, whole genome shotgun sequence	4416..4677																																																avrA	ABOJOV010000012.1	39351..40220	99.54	870	0						
GCA_033048475.1_PDT001759611.1_genomic.fna	Salmonella_enterica	0.5208	547.708 KB	4	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABOJOR010000001.1 Salmonella enterica strain PNUSAS351657 SAMN35439635-rid18230263.denovo.01, whole genome shotgun sequence	643324..643761	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABOJOR010000026.1 Salmonella enterica strain PNUSAS351657 SAMN35439635-rid18230263.guided.19, whole genome shotgun sequence	7808..8245	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJOR010000003.1	543868..544736	99.425	870	0						
GCA_033048495.1_PDT001759607.1_genomic.fna	Salmonella_enterica	0.5219	324.585 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJOS010000003.1 Salmonella enterica strain PNUSAS351660 SAMN35439632-rid18230223.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJOS010000046.1 Salmonella enterica strain PNUSAS351660 SAMN35439632-rid18230223.guided.22, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOJOS010000014.1 Salmonella enterica strain PNUSAS351660 SAMN35439632-rid18230223.denovo.14, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOJOS010000014.1 Salmonella enterica strain PNUSAS351660 SAMN35439632-rid18230223.denovo.14, whole genome shotgun sequence	30407..30668																																																avrA	ABOJOS010000001.1	451153..452021	100	869	0						
GCA_033048515.1_PDT001759600.1_genomic.fna	Salmonella_enterica	0.5215	280.963 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJOT010000001.1 Salmonella enterica strain PNUSAS351653 SAMN35439637-rid18230153.denovo.01, whole genome shotgun sequence	790041..790478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJOT010000044.1 Salmonella enterica strain PNUSAS351653 SAMN35439637-rid18230153.guided.25, whole genome shotgun sequence	12960..13397	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOJOT010000016.1 Salmonella enterica strain PNUSAS351653 SAMN35439637-rid18230153.denovo.16, whole genome shotgun sequence	68631..69836	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJOT010000043.1 Salmonella enterica strain PNUSAS351653 SAMN35439637-rid18230153.guided.23, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOJOT010000030.1 Salmonella enterica strain PNUSAS351653 SAMN35439637-rid18230153.denovo.34, whole genome shotgun sequence	547..675	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJOT010000016.1 Salmonella enterica strain PNUSAS351653 SAMN35439637-rid18230153.denovo.16, whole genome shotgun sequence	76222..76363		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJOT010000043.1 Salmonella enterica strain PNUSAS351653 SAMN35439637-rid18230153.guided.23, whole genome shotgun sequence	3169..3310																																									avrA	ABOJOT010000002.1	39548..40417	98.966	870	0						
GCA_033048535.1_PDT001759582.1_genomic.fna	Salmonella_enterica	0.5202	469.757 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJOW010000001.1 Salmonella enterica strain PNUSAS351658 SAMN35439634-rid18228913.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJOW010000029.1 Salmonella enterica strain PNUSAS351658 SAMN35439634-rid18228913.guided.18, whole genome shotgun sequence	11019..11456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJOW010000017.1 Salmonella enterica strain PNUSAS351658 SAMN35439634-rid18228913.denovo.17, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOJOW010000017.1 Salmonella enterica strain PNUSAS351658 SAMN35439634-rid18228913.denovo.17, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABOJOW010000018.1 Salmonella enterica strain PNUSAS351658 SAMN35439634-rid18228913.denovo.20, whole genome shotgun sequence	32011..32384																																									avrA	ABOJOW010000007.1	174479..175348	99.54	870	0						
GCA_033048875.1_PDT001759453.1_genomic.fna	Salmonella_enterica	0.52	368.039 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFIB(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJPO010000001.1 Salmonella enterica strain PNUSAS351610 SAMN35436909-rid18228683.denovo.01, whole genome shotgun sequence	293265..293702	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJPO010000044.1 Salmonella enterica strain PNUSAS351610 SAMN35436909-rid18228683.guided.15, whole genome shotgun sequence	40049..40486	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABOJPO010000031.1 Salmonella enterica strain PNUSAS351610 SAMN35436909-rid18228683.denovo.34, whole genome shotgun sequence	4022..4152	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJPO010000021.1 Salmonella enterica strain PNUSAS351610 SAMN35436909-rid18228683.denovo.23, whole genome shotgun sequence	34369..35011		enterobacteriales	IncX1	98.66	374 / 374	ABOJPO010000028.1 Salmonella enterica strain PNUSAS351610 SAMN35436909-rid18228683.denovo.30, whole genome shotgun sequence	18958..19331																																									avrA	ABOJPO010000002.1	505833..506702	99.54	870	0						
GCA_033048895.1_PDT001759452.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJPP010000001.1 Salmonella enterica strain PNUSAS351616 SAMN35436882-rid18228673.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJPP010000026.1 Salmonella enterica strain PNUSAS351616 SAMN35436882-rid18228673.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFII(S)	100	262 / 262	ABOJPP010000017.1 Salmonella enterica strain PNUSAS351616 SAMN35436882-rid18228673.denovo.20, whole genome shotgun sequence	3268..3529																																																						avrA	ABOJPP010000002.1	553642..554511	99.54	870	0						
GCA_033048935.1_PDT001759451.1_genomic.fna	Salmonella_enterica	0.5212	275.098 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJPQ010000001.1 Salmonella enterica strain PNUSAS351618 SAMN35436881-rid18228663.denovo.01, whole genome shotgun sequence	337830..338267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJPQ010000050.1 Salmonella enterica strain PNUSAS351618 SAMN35436881-rid18228663.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJPQ010000003.1	171578..172446	99.77	870	0						
GCA_033048955.1_PDT001759450.1_genomic.fna	Salmonella_enterica	0.522	417.219 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJPR010000001.1 Salmonella enterica strain PNUSAS351619 SAMN35436883-rid18228653.denovo.01, whole genome shotgun sequence	790286..790723	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJPR010000028.1 Salmonella enterica strain PNUSAS351619 SAMN35436883-rid18228653.guided.12, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJPR010000002.1	129887..130756	98.966	870	0						
GCA_033048975.1_PDT001759449.1_genomic.fna	Salmonella_enterica	0.5208	489.739 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJPS010000001.1 Salmonella enterica strain PNUSAS351611 SAMN35436876-rid18228643.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJPS010000028.1 Salmonella enterica strain PNUSAS351611 SAMN35436876-rid18228643.guided.14, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJPS010000015.1 Salmonella enterica strain PNUSAS351611 SAMN35436876-rid18228643.denovo.17, whole genome shotgun sequence	48158..48800	enterobacteriales	IncFII(S)	100	262 / 262	ABOJPS010000015.1 Salmonella enterica strain PNUSAS351611 SAMN35436876-rid18228643.denovo.17, whole genome shotgun sequence	3905..4166																																																avrA	ABOJPS010000002.1	552782..553651	99.54	870	0						
GCA_033048995.1_PDT001759447.1_genomic.fna	Salmonella_enterica	0.5212	210.222 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJPT010000001.1 Salmonella enterica strain PNUSAS351613 SAMN35436875-rid18228623.denovo.01, whole genome shotgun sequence	337830..338267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJPT010000047.1 Salmonella enterica strain PNUSAS351613 SAMN35436875-rid18228623.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJPT010000003.1	171578..172446	99.77	870	0						
GCA_033049015.1_PDT001759443.1_genomic.fna	Salmonella_enterica	0.52	368.039 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	ColRNAI,IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJPX010000001.1 Salmonella enterica strain PNUSAS351617 SAMN35436878-rid18228603.denovo.01, whole genome shotgun sequence	293265..293702	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJPX010000050.1 Salmonella enterica strain PNUSAS351617 SAMN35436878-rid18228603.guided.19, whole genome shotgun sequence	39896..40333	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABOJPX010000034.1 Salmonella enterica strain PNUSAS351617 SAMN35436878-rid18228603.denovo.37, whole genome shotgun sequence	4022..4152	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJPX010000026.1 Salmonella enterica strain PNUSAS351617 SAMN35436878-rid18228603.denovo.28, whole genome shotgun sequence	16227..16869		enterobacteriales	IncFII(S)	100	262 / 262	ABOJPX010000032.1 Salmonella enterica strain PNUSAS351617 SAMN35436878-rid18228603.denovo.35, whole genome shotgun sequence	2851..3112		enterobacteriales	IncX1	98.66	374 / 374	ABOJPX010000021.1 Salmonella enterica strain PNUSAS351617 SAMN35436878-rid18228603.denovo.23, whole genome shotgun sequence	30338..30711																																		avrA	ABOJPX010000002.1	505833..506702	99.54	870	0						
GCA_033049035.1_PDT001759448.1_genomic.fna	Salmonella_enterica	0.5212	210.222 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJPU010000001.1 Salmonella enterica strain PNUSAS351614 SAMN35436880-rid18228633.denovo.01, whole genome shotgun sequence	337830..338267	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJPU010000051.1 Salmonella enterica strain PNUSAS351614 SAMN35436880-rid18228633.guided.14, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJPU010000003.1	171578..172446	99.77	870	0						
GCA_033049055.1_PDT001759442.1_genomic.fna	Salmonella_enterica	0.5202	304.487 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJPY010000002.1 Salmonella enterica strain PNUSAS351612 SAMN35436877-rid18228593.denovo.02, whole genome shotgun sequence	15960..16397	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJPY010000040.1 Salmonella enterica strain PNUSAS351612 SAMN35436877-rid18228593.guided.21, whole genome shotgun sequence	16001..16438	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJPY010000021.1 Salmonella enterica strain PNUSAS351612 SAMN35436877-rid18228593.denovo.23, whole genome shotgun sequence	34371..35013	enterobacteriales	IncFII(S)	100	262 / 262	ABOJPY010000027.1 Salmonella enterica strain PNUSAS351612 SAMN35436877-rid18228593.denovo.30, whole genome shotgun sequence	5032..5293		enterobacteriales	IncX1	98.66	374 / 374	ABOJPY010000022.1 Salmonella enterica strain PNUSAS351612 SAMN35436877-rid18228593.denovo.24, whole genome shotgun sequence	30551..30924																																									avrA	ABOJPY010000001.1	505815..506684	99.54	870	0						
GCA_033049075.1_PDT001759446.1_genomic.fna	Salmonella_enterica	0.5204	450.776 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJPV010000001.1 Salmonella enterica strain PNUSAS351615 SAMN35436879-rid18228613.denovo.01, whole genome shotgun sequence	290556..290993	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJPV010000026.1 Salmonella enterica strain PNUSAS351615 SAMN35436879-rid18228613.guided.12, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJPV010000014.1 Salmonella enterica strain PNUSAS351615 SAMN35436879-rid18228613.denovo.16, whole genome shotgun sequence	40515..41157																																																						avrA	ABOJPV010000002.1	505376..506245	99.54	870	0						
GCA_033049135.1_PDT001759429.1_genomic.fna	Salmonella_enterica	0.5207	333.491 KB	5	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	DAQMZB010000001.1 TPA_asm: Salmonella enterica strain FR13-RH-2 SAMN35436640-rid18228463.denovo.01, whole genome shotgun sequence	604759..605196	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	DAQMZB010000043.1 TPA_asm: Salmonella enterica strain FR13-RH-2 SAMN35436640-rid18228463.guided.28, whole genome shotgun sequence	4759..5196	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	DAQMZB010000033.1 TPA_asm: Salmonella enterica strain FR13-RH-2 SAMN35436640-rid18228463.denovo.35, whole genome shotgun sequence	2246..2354	enterobacteriales	IncI1-I(Alpha)	94.93	138 / 142	DAQMZB010000016.1 TPA_asm: Salmonella enterica strain FR13-RH-2 SAMN35436640-rid18228463.denovo.16, whole genome shotgun sequence	77432..77567																																																avrA	DAQMZB010000003.1	39456..40325	99.655	870	0						
GCA_033049175.1_PDT001759423.1_genomic.fna	Salmonella_enterica	0.5222	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJQA010000001.1 Salmonella enterica strain PNUSAS351566 SAMN35421631-rid18228123.denovo.01, whole genome shotgun sequence	790295..790732	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJQA010000031.1 Salmonella enterica strain PNUSAS351566 SAMN35421631-rid18228123.guided.14, whole genome shotgun sequence	40280..40717	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJQA010000002.1	183123..183992	98.966	870	0						
GCA_033049195.1_PDT001759422.1_genomic.fna	Salmonella_enterica	0.5224	386.371 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJQB010000001.1 Salmonella enterica strain PNUSAS351568 SAMN35421624-rid18228113.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJQB010000031.1 Salmonella enterica strain PNUSAS351568 SAMN35421624-rid18228113.guided.18, whole genome shotgun sequence	13462..13899	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJQB010000002.1	183123..183992	98.966	870	0						
GCA_033049215.1_PDT001759420.1_genomic.fna	Salmonella_enterica	0.5214	406.327 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJQC010000001.1 Salmonella enterica strain PNUSAS351567 SAMN35421633-rid18228103.denovo.01, whole genome shotgun sequence	780560..780997	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJQC010000028.1 Salmonella enterica strain PNUSAS351567 SAMN35421633-rid18228103.guided.22, whole genome shotgun sequence	4007..4444	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJQC010000017.1 Salmonella enterica strain PNUSAS351567 SAMN35421633-rid18228103.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOJQC010000019.1 Salmonella enterica strain PNUSAS351567 SAMN35421633-rid18228103.denovo.20, whole genome shotgun sequence	3398..3659																																																avrA	ABOJQC010000002.1	553642..554511	99.54	870	0						
GCA_033049235.1_PDT001759419.1_genomic.fna	Salmonella_enterica	0.5199	224.781 KB	6	aroC_8,dnaN_8,hemD_11,hisD_11,purE_5,sucA_11,thrA_15	17	4:z:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_8	dnaN	100	100	dnaN_8	hemD	100	100	hemD_11	hisD	100	100	hisD_11	purE	100	100	purE_5	sucA	100	100	sucA_11	thrA	100	100	thrA_15	4	z	1,7	Salmonella enterica subspecies enterica (subspecies I)	Indiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJQD010000005.1 Salmonella enterica strain PNUSAS351565 SAMN35421629-rid18228093.denovo.05, whole genome shotgun sequence	277383..277820	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJQD010000049.1 Salmonella enterica strain PNUSAS351565 SAMN35421629-rid18228093.guided.31, whole genome shotgun sequence	12239..12676	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033049255.1_PDT001759418.1_genomic.fna	Salmonella_enterica	0.5222	291.096 KB	5	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJQH010000002.1 Salmonella enterica strain PNUSAS351569 SAMN35421627-rid18228083.denovo.02, whole genome shotgun sequence	298754..299191	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.93	373/438	ABOJQH010000040.1 Salmonella enterica strain PNUSAS351569 SAMN35421627-rid18228083.guided.35, whole genome shotgun sequence	1..373	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJQH010000001.1	509853..510719	99.08	870	0						
GCA_033049415.1_PDT001759409.1_genomic.fna	Salmonella_enterica	0.5202	489.494 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJQM010000001.1 Salmonella enterica strain PNUSAS351408 SAMN35368878-rid18228003.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJQM010000022.1 Salmonella enterica strain PNUSAS351408 SAMN35368878-rid18228003.guided.11, whole genome shotgun sequence	11418..11855	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJQM010000010.1 Salmonella enterica strain PNUSAS351408 SAMN35368878-rid18228003.denovo.12, whole genome shotgun sequence	40465..41107	enterobacteriales	IncFII(S)	100	262 / 262	ABOJQM010000015.1 Salmonella enterica strain PNUSAS351408 SAMN35368878-rid18228003.denovo.18, whole genome shotgun sequence	3361..3622		enterobacteriales	IncX1	98.93	374 / 374	ABOJQM010000011.1 Salmonella enterica strain PNUSAS351408 SAMN35368878-rid18228003.denovo.13, whole genome shotgun sequence	32011..32384																																									avrA	ABOJQM010000002.1	553690..554559	99.54	870	0						
GCA_033049435.1_PDT001759408.1_genomic.fna	Salmonella_enterica	0.5217	341.943 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJQO010000003.1 Salmonella enterica strain PNUSAS351388 SAMN35368887-rid18227993.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJQO010000044.1 Salmonella enterica strain PNUSAS351388 SAMN35368887-rid18227993.guided.27, whole genome shotgun sequence	3028..3465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOJQO010000016.1 Salmonella enterica strain PNUSAS351388 SAMN35368887-rid18227993.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOJQO010000016.1 Salmonella enterica strain PNUSAS351388 SAMN35368887-rid18227993.denovo.16, whole genome shotgun sequence	30395..30656																																																avrA	ABOJQO010000004.1	209211..210079	100	869	0						
GCA_033049455.1_PDT001759407.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJQN010000001.1 Salmonella enterica strain PNUSAS351413 SAMN35368872-rid18227983.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJQN010000022.1 Salmonella enterica strain PNUSAS351413 SAMN35368872-rid18227983.guided.13, whole genome shotgun sequence	41912..42349	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJQN010000012.1 Salmonella enterica strain PNUSAS351413 SAMN35368872-rid18227983.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOJQN010000015.1 Salmonella enterica strain PNUSAS351413 SAMN35368872-rid18227983.denovo.17, whole genome shotgun sequence	3392..3653																																																avrA	ABOJQN010000002.1	553636..554505	99.54	870	0						
GCA_033049475.1_PDT001759406.1_genomic.fna	Salmonella_enterica	0.5223	109.437 KB	12	aroC_234,dnaN_198,hemD_96,hisD_267,purE_231,sucA_208,thrA_142	816	9:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_234	dnaN	100	100	dnaN_198	hemD	100	100	hemD_96	hisD	100	100	hisD_267	purE	100	100	purE_231	sucA	100	100	sucA_208	thrA	100	100	thrA_142	9	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Lomalinda		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJQQ010000031.1 Salmonella enterica strain PNUSAS351406 SAMN35368875-rid18227973.denovo.31, whole genome shotgun sequence	10104..10541	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJQQ010000067.1 Salmonella enterica strain PNUSAS351406 SAMN35368875-rid18227973.guided.55, whole genome shotgun sequence	6025..6462	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.34	263 / 262	ABOJQQ010000037.1 Salmonella enterica strain PNUSAS351406 SAMN35368875-rid18227973.denovo.37, whole genome shotgun sequence	26921..27180																																																																	
GCA_033049495.1_PDT001759404.1_genomic.fna	Salmonella_enterica	0.5204	393.937 KB	5	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOJQP010000001.1 Salmonella enterica strain PNUSAS351412 SAMN35368884-rid18227953.denovo.01, whole genome shotgun sequence	346944..347381	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOJQP010000033.1 Salmonella enterica strain PNUSAS351412 SAMN35368884-rid18227953.guided.25, whole genome shotgun sequence	1249..1686	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJQP010000008.1	150992..151861	99.54	870	0						
GCA_033049515.1_PDT001759402.1_genomic.fna	Salmonella_enterica	0.5198	620.143 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),ColRNAI,IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOJQS010000001.1 Salmonella enterica strain PNUSAS351405 SAMN35368600-rid18227933.denovo.01, whole genome shotgun sequence	594156..594593	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOJQS010000035.1 Salmonella enterica strain PNUSAS351405 SAMN35368600-rid18227933.guided.16, whole genome shotgun sequence	40441..40878	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOJQS010000026.1 Salmonella enterica strain PNUSAS351405 SAMN35368600-rid18227933.denovo.29, whole genome shotgun sequence	186..316	enterobacteriales	ColRNAI	90.08	131 / 130	ABOJQS010000024.1 Salmonella enterica strain PNUSAS351405 SAMN35368600-rid18227933.denovo.27, whole genome shotgun sequence	3981..4111		enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOJQS010000013.1 Salmonella enterica strain PNUSAS351405 SAMN35368600-rid18227933.denovo.14, whole genome shotgun sequence	15755..16288																																									avrA	ABOJQS010000004.1	102014..102882	99.425	870	0						
GCA_033049535.1_PDT001759403.1_genomic.fna	Salmonella_enterica	0.5209	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJQR010000001.1 Salmonella enterica strain PNUSAS351400 SAMN35368881-rid18227943.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJQR010000020.1 Salmonella enterica strain PNUSAS351400 SAMN35368881-rid18227943.guided.13, whole genome shotgun sequence	11141..11578	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJQR010000011.1 Salmonella enterica strain PNUSAS351400 SAMN35368881-rid18227943.denovo.12, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	ABOJQR010000015.1 Salmonella enterica strain PNUSAS351400 SAMN35368881-rid18227943.denovo.18, whole genome shotgun sequence	3397..3658																																																avrA	ABOJQR010000002.1	553635..554504	99.54	870	0						
GCA_033049555.1_PDT001759398.1_genomic.fna	Salmonella_enterica	0.5218	701.214 KB	3	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJQU010000001.1 Salmonella enterica strain PNUSAS351398 SAMN35368606-rid18227893.denovo.01, whole genome shotgun sequence	704107..704544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJQU010000018.1 Salmonella enterica strain PNUSAS351398 SAMN35368606-rid18227893.guided.12, whole genome shotgun sequence	34178..34615	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJQU010000002.1	589078..589944	99.08	870	0						
GCA_033049575.1_PDT001759395.1_genomic.fna	Salmonella_enterica	0.5211	489.738 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJQX010000001.1 Salmonella enterica strain PNUSAS351407 SAMN35368874-rid18227863.denovo.01, whole genome shotgun sequence	815094..815531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJQX010000022.1 Salmonella enterica strain PNUSAS351407 SAMN35368874-rid18227863.guided.14, whole genome shotgun sequence	11917..12354	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJQX010000011.1 Salmonella enterica strain PNUSAS351407 SAMN35368874-rid18227863.denovo.12, whole genome shotgun sequence	40508..41150	enterobacteriales	IncFII(S)	100	262 / 262	ABOJQX010000014.1 Salmonella enterica strain PNUSAS351407 SAMN35368874-rid18227863.denovo.17, whole genome shotgun sequence	3320..3581																																																avrA	ABOJQX010000002.1	553187..554056	99.54	870	0						
GCA_033049595.1_PDT001759397.1_genomic.fna	Salmonella_enterica	0.5204	478.724 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJQV010000001.1 Salmonella enterica strain PNUSAS351414 SAMN35368882-rid18227883.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJQV010000026.1 Salmonella enterica strain PNUSAS351414 SAMN35368882-rid18227883.guided.19, whole genome shotgun sequence	307..744	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJQV010000014.1 Salmonella enterica strain PNUSAS351414 SAMN35368882-rid18227883.denovo.15, whole genome shotgun sequence	18329..18971	enterobacteriales	IncFII(S)	100	262 / 262	ABOJQV010000018.1 Salmonella enterica strain PNUSAS351414 SAMN35368882-rid18227883.denovo.21, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	98.93	374 / 374	ABOJQV010000012.1 Salmonella enterica strain PNUSAS351414 SAMN35368882-rid18227883.denovo.13, whole genome shotgun sequence	32011..32384																																									avrA	ABOJQV010000002.1	553684..554553	99.54	870	0						
GCA_033049615.1_PDT001759396.1_genomic.fna	Salmonella_enterica	0.5212	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJQW010000001.1 Salmonella enterica strain PNUSAS351410 SAMN35368876-rid18227873.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJQW010000022.1 Salmonella enterica strain PNUSAS351410 SAMN35368876-rid18227873.guided.17, whole genome shotgun sequence	8259..8696	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJQW010000012.1 Salmonella enterica strain PNUSAS351410 SAMN35368876-rid18227873.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOJQW010000015.1 Salmonella enterica strain PNUSAS351410 SAMN35368876-rid18227873.denovo.18, whole genome shotgun sequence	3361..3622																																																avrA	ABOJQW010000002.1	553636..554505	99.54	870	0						
GCA_033049635.1_PDT001759399.1_genomic.fna	Salmonella_enterica	0.5207	707.807 KB	2	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJQT010000001.1 Salmonella enterica strain PNUSAS351391 SAMN35368890-rid18227903.denovo.01, whole genome shotgun sequence	624569..625006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJQT010000022.1 Salmonella enterica strain PNUSAS351391 SAMN35368890-rid18227903.guided.15, whole genome shotgun sequence	1004..1441	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033049655.1_PDT001759394.1_genomic.fna	Salmonella_enterica	0.5201	490.114 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJQY010000001.1 Salmonella enterica strain PNUSAS351397 SAMN35368886-rid18227853.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJQY010000022.1 Salmonella enterica strain PNUSAS351397 SAMN35368886-rid18227853.guided.13, whole genome shotgun sequence	17437..17874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJQY010000011.1 Salmonella enterica strain PNUSAS351397 SAMN35368886-rid18227853.denovo.11, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	ABOJQY010000015.1 Salmonella enterica strain PNUSAS351397 SAMN35368886-rid18227853.denovo.17, whole genome shotgun sequence	3388..3649		enterobacteriales	IncX1	98.93	374 / 374	ABOJQY010000012.1 Salmonella enterica strain PNUSAS351397 SAMN35368886-rid18227853.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABOJQY010000002.1	553690..554559	99.54	870	0						
GCA_033049675.1_PDT001759393.1_genomic.fna	Salmonella_enterica	0.5208	744.297 KB	2	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,sucA_64,thrA_67	198	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA	100	100	sucA_64	thrA	100	100	thrA_67	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOJQZ010000001.1 Salmonella enterica strain PNUSAS351402 SAMN35368880-rid18227843.denovo.01, whole genome shotgun sequence	1361631..1362068	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABOJQZ010000020.1 Salmonella enterica strain PNUSAS351402 SAMN35368880-rid18227843.guided.13, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOJQZ010000015.1 Salmonella enterica strain PNUSAS351402 SAMN35368880-rid18227843.denovo.18, whole genome shotgun sequence	1708..1838	enterobacteriales	Col440I	90.27	113 / 114	ABOJQZ010000013.1 Salmonella enterica strain PNUSAS351402 SAMN35368880-rid18227843.denovo.16, whole genome shotgun sequence	3345..3457																																																avrA	ABOJQZ010000002.1	556553..557422	99.31	870	0						
GCA_033049695.1_PDT001759392.1_genomic.fna	Salmonella_enterica	0.5228	470.506 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJRA010000002.1 Salmonella enterica strain PNUSAS351401 SAMN35368889-rid18227833.denovo.02, whole genome shotgun sequence	80055..80492	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJRA010000027.1 Salmonella enterica strain PNUSAS351401 SAMN35368889-rid18227833.guided.18, whole genome shotgun sequence	29171..29608	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJRA010000004.1	94091..94960	99.655	870	0						
GCA_033049715.1_PDT001759391.1_genomic.fna	Salmonella_enterica	0.5211	278.34 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJRB010000001.1 Salmonella enterica strain PNUSAS351395 SAMN35368883-rid18227823.denovo.01, whole genome shotgun sequence	570674..571111	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJRB010000037.1 Salmonella enterica strain PNUSAS351395 SAMN35368883-rid18227823.denovo.42, whole genome shotgun sequence	7..843	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJRB010000037.1 Salmonella enterica strain PNUSAS351395 SAMN35368883-rid18227823.denovo.42, whole genome shotgun sequence	843..1646	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOJRB010000053.1 Salmonella enterica strain PNUSAS351395 SAMN35368883-rid18227823.guided.30, whole genome shotgun sequence	12243..12680	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJRB010000056.1 Salmonella enterica strain PNUSAS351395 SAMN35368883-rid18227823.guided.41, whole genome shotgun sequence	3283..4119	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJRB010000056.1 Salmonella enterica strain PNUSAS351395 SAMN35368883-rid18227823.guided.41, whole genome shotgun sequence	2480..3283	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOJRB010000040.1 Salmonella enterica strain PNUSAS351395 SAMN35368883-rid18227823.denovo.46, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOJRB010000057.1 Salmonella enterica strain PNUSAS351395 SAMN35368883-rid18227823.guided.45, whole genome shotgun sequence	560..1420	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOJRB010000037.1 Salmonella enterica strain PNUSAS351395 SAMN35368883-rid18227823.denovo.42, whole genome shotgun sequence	1707..2522	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOJRB010000056.1 Salmonella enterica strain PNUSAS351395 SAMN35368883-rid18227823.guided.41, whole genome shotgun sequence	1604..2419	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOJRB010000032.1 Salmonella enterica strain PNUSAS351395 SAMN35368883-rid18227823.denovo.36, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJRB010000055.1 Salmonella enterica strain PNUSAS351395 SAMN35368883-rid18227823.guided.35, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																			avrA	ABOJRB010000002.1	77578..78447	99.885	870	0						
GCA_033049735.1_PDT001759390.1_genomic.fna	Salmonella_enterica	0.5211	301.437 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		1	Col440I	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJRC010000001.1 Salmonella enterica strain PNUSAS351403 SAMN35368888-rid18227813.denovo.01, whole genome shotgun sequence	255957..256394	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJRC010000033.1 Salmonella enterica strain PNUSAS351403 SAMN35368888-rid18227813.denovo.38, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJRC010000033.1 Salmonella enterica strain PNUSAS351403 SAMN35368888-rid18227813.denovo.38, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOJRC010000045.1 Salmonella enterica strain PNUSAS351403 SAMN35368888-rid18227813.guided.36, whole genome shotgun sequence	1739..2176	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJRC010000046.1 Salmonella enterica strain PNUSAS351403 SAMN35368888-rid18227813.guided.37, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOJRC010000046.1 Salmonella enterica strain PNUSAS351403 SAMN35368888-rid18227813.guided.37, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOJRC010000036.1 Salmonella enterica strain PNUSAS351403 SAMN35368888-rid18227813.denovo.42, whole genome shotgun sequence	369..1229	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOJRC010000047.1 Salmonella enterica strain PNUSAS351403 SAMN35368888-rid18227813.guided.41, whole genome shotgun sequence	561..1421	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOJRC010000033.1 Salmonella enterica strain PNUSAS351403 SAMN35368888-rid18227813.denovo.38, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOJRC010000046.1 Salmonella enterica strain PNUSAS351403 SAMN35368888-rid18227813.guided.37, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOJRC010000027.1 Salmonella enterica strain PNUSAS351403 SAMN35368888-rid18227813.denovo.27, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJRC010000042.1 Salmonella enterica strain PNUSAS351403 SAMN35368888-rid18227813.guided.28, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	Col440I	93.64	110 / 114	ABOJRC010000035.1 Salmonella enterica strain PNUSAS351403 SAMN35368888-rid18227813.denovo.40, whole genome shotgun sequence	1568..1677																																																						avrA	ABOJRC010000002.1	508772..509641	99.885	870	0						
GCA_033049755.1_PDT001759389.1_genomic.fna	Salmonella_enterica	0.5207	502.106 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJRD010000001.1 Salmonella enterica strain PNUSAS351392 SAMN35368877-rid18227803.denovo.01, whole genome shotgun sequence	645054..645491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJRD010000022.1 Salmonella enterica strain PNUSAS351392 SAMN35368877-rid18227803.guided.18, whole genome shotgun sequence	3168..3605	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJRD010000003.1	514772..515640	99.54	870	0						
GCA_033049775.1_PDT001759386.1_genomic.fna	Salmonella_enterica	0.521	217.716 KB	7	aroC_20,dnaN_4,hemD_23,hisD_14,purE_16,sucA_19,thrA_140	423	4:b:-	2	aac(6')-Iaa,aac(6')-Iaa,blaCTX-M-14,blaCTX-M-14	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_20	dnaN	100	100	dnaN_4	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_19	thrA	100	100	thrA_140	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJRE010000011.1 Salmonella enterica strain PNUSAS351415 SAMN35368879-rid18227773.denovo.11, whole genome shotgun sequence	37880..38317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJRE010000041.1 Salmonella enterica strain PNUSAS351415 SAMN35368879-rid18227773.guided.31, whole genome shotgun sequence	13170..13607	Amikacin, Tobramycin	NC_003197	blaCTX-M-14	100	876/876	ABOJRE010000019.1 Salmonella enterica strain PNUSAS351415 SAMN35368879-rid18227773.denovo.19, whole genome shotgun sequence	17746..18621	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AF252622	blaCTX-M-14	100	876/876	ABOJRE010000043.1 Salmonella enterica strain PNUSAS351415 SAMN35368879-rid18227773.guided.37, whole genome shotgun sequence	5814..6689	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AF252622																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJRE010000019.1 Salmonella enterica strain PNUSAS351415 SAMN35368879-rid18227773.denovo.19, whole genome shotgun sequence	85341..85482																																																																	
GCA_033049795.1_PDT001759385.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJRF010000001.1 Salmonella enterica strain PNUSAS351409 SAMN35368885-rid18227763.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJRF010000022.1 Salmonella enterica strain PNUSAS351409 SAMN35368885-rid18227763.guided.17, whole genome shotgun sequence	2665..3102	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJRF010000011.1 Salmonella enterica strain PNUSAS351409 SAMN35368885-rid18227763.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOJRF010000015.1 Salmonella enterica strain PNUSAS351409 SAMN35368885-rid18227763.denovo.18, whole genome shotgun sequence	3268..3529																																																avrA	ABOJRF010000002.1	553636..554505	99.54	870	0						
GCA_033049815.1_PDT001759384.1_genomic.fna	Salmonella_enterica	0.5215	731.091 KB	4	aroC_2,dnaN_59,hemD_23,hisD_64,purE_38,sucA_19,thrA_12	1499	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_59	hemD	100	100	hemD_23	hisD	100	100	hisD_64	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJRG010000002.1 Salmonella enterica strain PNUSAS351404 SAMN35368873-rid18227753.denovo.02, whole genome shotgun sequence	264363..264800	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJRG010000019.1 Salmonella enterica strain PNUSAS351404 SAMN35368873-rid18227753.guided.15, whole genome shotgun sequence	16023..16460	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJRG010000003.1	558822..559691	99.31	870	0						
GCA_033049835.1_PDT001759381.1_genomic.fna	Salmonella_enterica	0.5222	465.173 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	10	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaLAP-2,blaOXA-10,blaOXA-10,blaLAP-2,cmlA1,cmlA1,qnrS1,qnrS1,ARR-2,ARR-2,sul2,sul2,tet(A),tet(A),dfrA14,dfrA14	1	gyrA_p.S83Y	1	IncFIB(K)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJRH010000004.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.denovo.04, whole genome shotgun sequence	51531..51968	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJRH010000019.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.denovo.24, whole genome shotgun sequence	729..1520	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJRH010000019.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.denovo.24, whole genome shotgun sequence	729..1520	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	99.54	438/438	ABOJRH010000029.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.guided.17, whole genome shotgun sequence	6394..6831	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJRH010000032.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.guided.23, whole genome shotgun sequence	4333..5124	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJRH010000032.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.guided.23, whole genome shotgun sequence	4333..5124	Spectinomycin, Streptomycin	JQ414041	blaLAP-2	100	858/858	ABOJRH010000014.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.denovo.15, whole genome shotgun sequence	1141..1998	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	blaOXA-10	100	801/801	ABOJRH010000019.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.denovo.24, whole genome shotgun sequence	1537..2337	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaOXA-10	100	801/801	ABOJRH010000032.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.guided.23, whole genome shotgun sequence	3516..4316	Amoxicillin, Ampicillin, Aztreonam, Piperacillin, Piperacillin+Tazobactam	J03427	blaLAP-2	100	858/858	ABOJRH010000033.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.guided.25, whole genome shotgun sequence	980..1837	Amoxicillin, Ampicillin, Cephalotin, Piperacillin, Ticarcillin	EU159120	cmlA1	99.68	1260/1260	ABOJRH010000019.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.denovo.24, whole genome shotgun sequence	2602..3861	Chloramphenicol	M64556	cmlA1	99.68	1260/1260	ABOJRH010000032.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.guided.23, whole genome shotgun sequence	1992..3251	Chloramphenicol	M64556	qnrS1	100	657/657	ABOJRH010000014.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.denovo.15, whole genome shotgun sequence	3595..4251	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOJRH010000033.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.guided.25, whole genome shotgun sequence	3434..4090	Ciprofloxacin	AB187515	ARR-2	100	453/453	ABOJRH010000019.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.denovo.24, whole genome shotgun sequence	4182..4634	Rifampicin	HQ141279	ARR-2	100	453/453	ABOJRH010000032.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.guided.23, whole genome shotgun sequence	1219..1671	Rifampicin	HQ141279	sul2	100	816/816	ABOJRH010000017.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.denovo.19, whole genome shotgun sequence	3535..4350	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOJRH010000030.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.guided.20, whole genome shotgun sequence	2823..3638	Sulfamethoxazole	AY034138	tet(A)	99.92	1200/1200	ABOJRH010000020.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.denovo.26, whole genome shotgun sequence	1838..3037	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOJRH010000034.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.guided.27, whole genome shotgun sequence	38..1237	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOJRH010000019.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.denovo.24, whole genome shotgun sequence	181..654	Trimethoprim	KF921535	dfrA14	100	474/474	ABOJRH010000032.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.guided.23, whole genome shotgun sequence	5199..5672	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																														gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(K)	98.93	560 / 560	ABOJRH010000014.1 Salmonella enterica strain PNUSAS351394 SAMN35368871-rid18227723.denovo.15, whole genome shotgun sequence	9745..10304																																																						avrA	ABOJRH010000002.1	554151..555009	98.506	870	0						
GCA_033049855.1_PDT001759377.1_genomic.fna	Salmonella_enterica	0.5214	649.245 KB	2	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOJRI010000001.1 Salmonella enterica strain PNUSAS351389 SAMN35368602-rid18227683.denovo.01, whole genome shotgun sequence	1390062..1390499	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJRI010000016.1 Salmonella enterica strain PNUSAS351389 SAMN35368602-rid18227683.guided.14, whole genome shotgun sequence	9677..10114	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJRI010000002.1	149712..150581	99.425	870	0						
GCA_033049875.1_PDT001759376.1_genomic.fna	Salmonella_enterica	0.52	489.647 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJRJ010000001.1 Salmonella enterica strain PNUSAS351396 SAMN35368604-rid18227673.denovo.01, whole genome shotgun sequence	733719..734156	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJRJ010000023.1 Salmonella enterica strain PNUSAS351396 SAMN35368604-rid18227673.guided.17, whole genome shotgun sequence	5216..5653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJRJ010000011.1 Salmonella enterica strain PNUSAS351396 SAMN35368604-rid18227673.denovo.11, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOJRJ010000011.1 Salmonella enterica strain PNUSAS351396 SAMN35368604-rid18227673.denovo.11, whole genome shotgun sequence	55622..55883		enterobacteriales	IncX1	98.67	377 / 377	ABOJRJ010000012.1 Salmonella enterica strain PNUSAS351396 SAMN35368604-rid18227673.denovo.12, whole genome shotgun sequence	6390..6766																																									avrA	ABOJRJ010000002.1	553108..553977	99.54	870	0						
GCA_033049895.1_PDT001759375.1_genomic.fna	Salmonella_enterica	0.5222	518.986 KB	4	aroC_15,dnaN_126,hemD_101,hisD_88,purE_8,sucA_19,thrA_18	446	16:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_126	hemD	100	100	hemD_101	hisD	100	100	hisD_88	purE	100	100	purE_8	sucA	100	100	sucA_19	thrA	100	100	thrA_18	16	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hvittingfoss		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOJRK010000001.1 Salmonella enterica strain PNUSAS351399 SAMN35368601-rid18227663.denovo.01, whole genome shotgun sequence	561463..561900	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOJRK010000022.1 Salmonella enterica strain PNUSAS351399 SAMN35368601-rid18227663.guided.15, whole genome shotgun sequence	12946..13383	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJRK010000009.1	140140..141008	99.655	870	0						
GCA_033049915.1_PDT001759374.1_genomic.fna	Salmonella_enterica	0.5228	421.995 KB	5	aroC_111,dnaN_109,hemD_17,hisD_149,purE_41,sucA_13,thrA_23	451	28:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_109	hemD	100	100	hemD_17	hisD	100	100	hisD_149	purE	100	100	purE_41	sucA	100	100	sucA_13	thrA	100	100	thrA_23	28	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Pomona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJRL010000005.1 Salmonella enterica strain PNUSAS351416 SAMN35368605-rid18227653.denovo.05, whole genome shotgun sequence	285313..285750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.31	355/438	ABOJRL010000029.1 Salmonella enterica strain PNUSAS351416 SAMN35368605-rid18227653.guided.22, whole genome shotgun sequence	1..355	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJRL010000004.1	140265..141134	99.54	870	0						
GCA_033049935.1_PDT001759369.1_genomic.fna	Salmonella_enterica	0.5209	204.124 KB	9	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOJRN010000010.1 Salmonella enterica strain PNUSAS351411 SAMN35368598-rid18227603.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOJRN010000058.1 Salmonella enterica strain PNUSAS351411 SAMN35368598-rid18227603.guided.40, whole genome shotgun sequence	11146..11580	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																																																																																						
GCA_033049955.1_PDT001759373.1_genomic.fna	Salmonella_enterica	0.5221	438.241 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJRM010000001.1 Salmonella enterica strain PNUSAS351390 SAMN35368599-rid18227643.denovo.01, whole genome shotgun sequence	835211..835648	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJRM010000021.1 Salmonella enterica strain PNUSAS351390 SAMN35368599-rid18227643.guided.16, whole genome shotgun sequence	6620..7057	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJRM010000006.1	148520..149389	99.77	870	0						
GCA_033049975.1_PDT001759368.1_genomic.fna	Salmonella_enterica	0.522	436.325 KB	5	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJRP010000001.1 Salmonella enterica strain PNUSAS351393 SAMN35368603-rid18227593.denovo.01, whole genome shotgun sequence	692438..692875	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJRP010000039.1 Salmonella enterica strain PNUSAS351393 SAMN35368603-rid18227593.guided.25, whole genome shotgun sequence	1922..2359	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOJRP010000011.1 Salmonella enterica strain PNUSAS351393 SAMN35368603-rid18227593.denovo.11, whole genome shotgun sequence	11447..12089																																																						avrA	ABOJRP010000003.1	174772..175642	99.656	871	0						
GCA_033050295.1_PDT001759329.1_genomic.fna	Salmonella_enterica	0.5218	290.405 KB	6	aroC_2,dnaN_2,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	31	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncQ1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOJSF010000004.1 Salmonella enterica strain PNUSAS351366 SAMN35366687-rid18227203.denovo.04, whole genome shotgun sequence	145284..145721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOJSF010000036.1 Salmonella enterica strain PNUSAS351366 SAMN35366687-rid18227203.guided.23, whole genome shotgun sequence	25264..25701	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncQ1	100	796 / 796	ABOJSF010000028.1 Salmonella enterica strain PNUSAS351366 SAMN35366687-rid18227203.denovo.31, whole genome shotgun sequence	292..1087																																																						avrA	ABOJSF010000001.1	617175..618045	99.656	871	0						
GCA_033050315.1_PDT001759331.1_genomic.fna	Salmonella_enterica	0.5197	187.75 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJSE010000001.1 Salmonella enterica strain PNUSAS351362 SAMN35366689-rid18227223.denovo.01, whole genome shotgun sequence	298863..299300	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJSE010000048.1 Salmonella enterica strain PNUSAS351362 SAMN35366689-rid18227223.guided.42, whole genome shotgun sequence	1429..1866	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOJSE010000012.1 Salmonella enterica strain PNUSAS351362 SAMN35366689-rid18227223.denovo.12, whole genome shotgun sequence	17980..18402	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOJSE010000046.1 Salmonella enterica strain PNUSAS351362 SAMN35366689-rid18227223.guided.35, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJSE010000013.1	28859..29728	99.195	870	0						
GCA_033050335.1_PDT001759328.1_genomic.fna	Salmonella_enterica	0.5212	568.743 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJSH010000001.1 Salmonella enterica strain PNUSAS351364 SAMN35366681-rid18227193.denovo.01, whole genome shotgun sequence	463788..464225	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOJSH010000031.1 Salmonella enterica strain PNUSAS351364 SAMN35366681-rid18227193.guided.22, whole genome shotgun sequence	8796..9233	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	94.92	374 / 374	ABOJSH010000014.1 Salmonella enterica strain PNUSAS351364 SAMN35366681-rid18227193.denovo.14, whole genome shotgun sequence	13796..14169																																																						avrA	ABOJSH010000002.1	553473..554342	99.77	870	0						
GCA_033050355.1_PDT001759326.1_genomic.fna	Salmonella_enterica	0.5216	430.045 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJSI010000001.1 Salmonella enterica strain PNUSAS351363 SAMN35366678-rid18227173.denovo.01, whole genome shotgun sequence	477367..477804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJSI010000025.1 Salmonella enterica strain PNUSAS351363 SAMN35366678-rid18227173.guided.19, whole genome shotgun sequence	4008..4445	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJSI010000011.1	140203..141071	99.195	870	0						
GCA_033050415.1_PDT001759325.1_genomic.fna	Salmonella_enterica	0.5214	375.637 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJSL010000001.1 Salmonella enterica strain PNUSAS351361 SAMN35366683-rid18227163.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJSL010000031.1 Salmonella enterica strain PNUSAS351361 SAMN35366683-rid18227163.guided.25, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJSL010000023.1 Salmonella enterica strain PNUSAS351361 SAMN35366683-rid18227163.denovo.24, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOJSL010000018.1 Salmonella enterica strain PNUSAS351361 SAMN35366683-rid18227163.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABOJSL010000009.1	175197..176066	99.54	870	0						
GCA_033050675.1_PDT001759330.1_genomic.fna	Salmonella_enterica	0.5207	208.668 KB	7	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJSX010000002.1 Salmonella enterica strain PNUSAS351367 SAMN35366691-rid18227213.denovo.02, whole genome shotgun sequence	170145..170582	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJSX010000051.1 Salmonella enterica strain PNUSAS351367 SAMN35366691-rid18227213.guided.44, whole genome shotgun sequence	2234..2671	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033050715.1_PDT001759327.1_genomic.fna	Salmonella_enterica	0.5207	238.812 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJSZ010000001.1 Salmonella enterica strain PNUSAS351365 SAMN35366685-rid18227183.denovo.01, whole genome shotgun sequence	458961..459398	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJSZ010000048.1 Salmonella enterica strain PNUSAS351365 SAMN35366685-rid18227183.guided.39, whole genome shotgun sequence	1779..2216	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOJSZ010000030.1 Salmonella enterica strain PNUSAS351365 SAMN35366685-rid18227183.denovo.32, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJSZ010000047.1 Salmonella enterica strain PNUSAS351365 SAMN35366685-rid18227183.guided.33, whole genome shotgun sequence	9820..11025	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABOJSZ010000002.1	540730..541599	99.885	870	0						
GCA_033050735.1_PDT001759322.1_genomic.fna	Salmonella_enterica	0.5228	235.57 KB	6	aroC_313,dnaN_445,hemD_3,hisD_507,purE_480,sucA_388,thrA_333	1959	1,3,19:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_313	dnaN	100	100	dnaN_445	hemD	100	100	hemD_3	hisD	100	100	hisD_507	purE	100	100	purE_480	sucA	100	100	sucA_388	thrA	100	100	thrA_333	1,3,19	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Liverpool		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOJTG010000001.1 Salmonella enterica strain PNUSAS351359 SAMN35366348-rid18227133.denovo.01, whole genome shotgun sequence	384685..385122	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOJTG010000043.1 Salmonella enterica strain PNUSAS351359 SAMN35366348-rid18227133.guided.26, whole genome shotgun sequence	24886..25323	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033050775.1_PDT001759321.1_genomic.fna	Salmonella_enterica	0.5201	281.989 KB	6	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	2	aac(6')-Iaa,aac(6')-If,aac(6')-Iaa,aac(6')-If	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOJTH010000001.1 Salmonella enterica strain PNUSAS351358 SAMN35366349-rid18227123.denovo.01, whole genome shotgun sequence	486981..487418	Amikacin, Tobramycin	NC_003197	aac(6')-If	90.63	427/435	ABOJTH010000015.1 Salmonella enterica strain PNUSAS351358 SAMN35366349-rid18227123.denovo.15, whole genome shotgun sequence	81151..81577	Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin	X55353	aac(6')-Iaa	96.58	438/438	ABOJTH010000037.1 Salmonella enterica strain PNUSAS351358 SAMN35366349-rid18227123.guided.23, whole genome shotgun sequence	30205..30642	Amikacin, Tobramycin	NC_003197	aac(6')-If	90.63	427/435	ABOJTH010000038.1 Salmonella enterica strain PNUSAS351358 SAMN35366349-rid18227123.guided.30, whole genome shotgun sequence	3277..3703	Tobramycin, Dibekacin, Amikacin, Sisomicin, Netilmicin	X55353																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJTH010000007.1	106799..107667	99.425	870	0						
GCA_033051155.1_PDT001759044.1_genomic.fna	Salmonella_enterica	0.5211	284.152 KB	5	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJTW010000001.1 Salmonella enterica strain PNUSAS351302 SAMN35365678-rid18224353.denovo.01, whole genome shotgun sequence	90824..91261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJTW010000044.1 Salmonella enterica strain PNUSAS351302 SAMN35365678-rid18224353.guided.26, whole genome shotgun sequence	5577..6014	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJTW010000020.1 Salmonella enterica strain PNUSAS351302 SAMN35365678-rid18224353.denovo.20, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOJTW010000020.1 Salmonella enterica strain PNUSAS351302 SAMN35365678-rid18224353.denovo.20, whole genome shotgun sequence	4416..4677																																																avrA	ABOJTW010000002.1	140844..141713	99.54	870	0						
GCA_033051175.1_PDT001759045.1_genomic.fna	Salmonella_enterica	0.5215	206.448 KB	9	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	3	aac(6')-Iaa,aac(6')-Iaa,qnrS1,qnrS1,tet(A),tet(A)	1	parC_p.T57S	1	p0111	aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJTV010000023.1 Salmonella enterica strain PNUSAS351301 SAMN35365674-rid18224363.denovo.23, whole genome shotgun sequence	15766..16203	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJTV010000059.1 Salmonella enterica strain PNUSAS351301 SAMN35365674-rid18224363.guided.35, whole genome shotgun sequence	11522..11959	Amikacin, Tobramycin	NC_003197	qnrS1	100	657/657	ABOJTV010000027.1 Salmonella enterica strain PNUSAS351301 SAMN35365674-rid18224363.denovo.27, whole genome shotgun sequence	12079..12735	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOJTV010000061.1 Salmonella enterica strain PNUSAS351301 SAMN35365674-rid18224363.guided.42, whole genome shotgun sequence	2473..3129	Ciprofloxacin	AB187515	tet(A)	99.92	1200/1200	ABOJTV010000027.1 Salmonella enterica strain PNUSAS351301 SAMN35365674-rid18224363.denovo.27, whole genome shotgun sequence	6225..7424	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOJTV010000062.1 Salmonella enterica strain PNUSAS351301 SAMN35365674-rid18224363.guided.44, whole genome shotgun sequence	105..1304	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	p0111	98.64	885 / 885	ABOJTV010000035.1 Salmonella enterica strain PNUSAS351301 SAMN35365674-rid18224363.denovo.37, whole genome shotgun sequence	1843..2727																																																						avrA	ABOJTV010000005.1	93862..94728	99.08	870	0						
GCA_033051195.1_PDT001759043.1_genomic.fna	Salmonella_enterica	0.5221	313.75 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJTX010000001.1 Salmonella enterica strain PNUSAS351298 SAMN35365677-rid18224343.denovo.01, whole genome shotgun sequence	517829..518266	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJTX010000055.1 Salmonella enterica strain PNUSAS351298 SAMN35365677-rid18224343.guided.28, whole genome shotgun sequence	985..1422	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOJTX010000033.1 Salmonella enterica strain PNUSAS351298 SAMN35365677-rid18224343.denovo.37, whole genome shotgun sequence	1153..1797	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOJTX010000058.1 Salmonella enterica strain PNUSAS351298 SAMN35365677-rid18224343.guided.40, whole genome shotgun sequence	54..698	Ciprofloxacin	EU432277	tet(A)	100	1200/1200	ABOJTX010000025.1 Salmonella enterica strain PNUSAS351298 SAMN35365677-rid18224343.denovo.25, whole genome shotgun sequence	841..2040	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJTX010000057.1 Salmonella enterica strain PNUSAS351298 SAMN35365677-rid18224343.guided.34, whole genome shotgun sequence	882..2081	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.91	132 / 131	ABOJTX010000027.1 Salmonella enterica strain PNUSAS351298 SAMN35365677-rid18224343.denovo.30, whole genome shotgun sequence	2840..2970	enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOJTX010000032.1 Salmonella enterica strain PNUSAS351298 SAMN35365677-rid18224343.denovo.36, whole genome shotgun sequence	967..1095		enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJTX010000033.1 Salmonella enterica strain PNUSAS351298 SAMN35365677-rid18224343.denovo.37, whole genome shotgun sequence	497..627		enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABOJTX010000035.1 Salmonella enterica strain PNUSAS351298 SAMN35365677-rid18224343.denovo.39, whole genome shotgun sequence	496..626		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJTX010000025.1 Salmonella enterica strain PNUSAS351298 SAMN35365677-rid18224343.denovo.25, whole genome shotgun sequence	7409..7550																											avrA	ABOJTX010000011.1	94980..95849	98.966	870	0						
GCA_033051215.1_PDT001759042.1_genomic.fna	Salmonella_enterica	0.5211	227.881 KB	8	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJTY010000003.1 Salmonella enterica strain PNUSAS351299 SAMN35365676-rid18224333.denovo.03, whole genome shotgun sequence	90824..91261	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJTY010000046.1 Salmonella enterica strain PNUSAS351299 SAMN35365676-rid18224333.guided.28, whole genome shotgun sequence	11055..11492	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJTY010000027.1 Salmonella enterica strain PNUSAS351299 SAMN35365676-rid18224333.denovo.29, whole genome shotgun sequence	6842..7484	enterobacteriales	IncFII(S)	100	262 / 262	ABOJTY010000028.1 Salmonella enterica strain PNUSAS351299 SAMN35365676-rid18224333.denovo.30, whole genome shotgun sequence	3395..3656																																																avrA	ABOJTY010000001.1	140844..141713	99.54	870	0						
GCA_033051275.1_PDT001759041.1_genomic.fna	Salmonella_enterica	0.5211	270.4 KB	5	aroC_5,dnaN_2,hemD_378,hisD_7,purE_6,sucA_6,thrA_11	1974	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_378	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJTZ010000001.1 Salmonella enterica strain PNUSAS351300 SAMN35365675-rid18224323.denovo.01, whole genome shotgun sequence	773827..774264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJTZ010000044.1 Salmonella enterica strain PNUSAS351300 SAMN35365675-rid18224323.guided.29, whole genome shotgun sequence	6966..7403	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJTZ010000026.1 Salmonella enterica strain PNUSAS351300 SAMN35365675-rid18224323.denovo.28, whole genome shotgun sequence	6849..7491	enterobacteriales	IncFII(S)	100	262 / 262	ABOJTZ010000023.1 Salmonella enterica strain PNUSAS351300 SAMN35365675-rid18224323.denovo.23, whole genome shotgun sequence	4416..4677																																																avrA	ABOJTZ010000002.1	140844..141713	99.54	870	0						
GCA_033051855.1_PDT001759000.1_genomic.fna	Salmonella_enterica	0.5235	41.271 KB	39	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJVF010000053.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312994 SAMN35365134-rid18223913.denovo.053, whole genome shotgun sequence	15451..15888	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOJVF010000171.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312994 SAMN35365134-rid18223913.denovo.175, whole genome shotgun sequence	50..829	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABOJVF010000220.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312994 SAMN35365134-rid18223913.guided.127, whole genome shotgun sequence	9693..10130	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOJVF010000225.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312994 SAMN35365134-rid18223913.guided.210, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOJVF010000134.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312994 SAMN35365134-rid18223913.denovo.137, whole genome shotgun sequence	1066..1932	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOJVF010000224.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312994 SAMN35365134-rid18223913.guided.205, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	99.92	1215/1215	ABOJVF010000134.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312994 SAMN35365134-rid18223913.denovo.137, whole genome shotgun sequence	7566..8780	Chloramphenicol, Florfenicol	AF118107	floR	99.92	1215/1215	ABOJVF010000222.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312994 SAMN35365134-rid18223913.guided.153, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOJVF010000223.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312994 SAMN35365134-rid18223913.guided.192, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABOJVF010000134.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312994 SAMN35365134-rid18223913.denovo.137, whole genome shotgun sequence	5454..6629	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABOJVF010000222.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312994 SAMN35365134-rid18223913.guided.153, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	Col440I	92.04	113 / 114	ABOJVF010000178.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312994 SAMN35365134-rid18223913.denovo.182, whole genome shotgun sequence	1334..1446	enterobacteriales	IncFIB(S)	100	643 / 643	ABOJVF010000187.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312994 SAMN35365134-rid18223913.denovo.191, whole genome shotgun sequence	1560..2202		enterobacteriales	IncFII(S)	100	262 / 262	ABOJVF010000130.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312994 SAMN35365134-rid18223913.denovo.133, whole genome shotgun sequence	9322..9583																																									avrA	ABOJVF010000005.1	81732..82601	99.885	870	0						
GCA_033051875.1_PDT001758999.1_genomic.fna	Salmonella_enterica	0.5234	48.985 KB	32	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJVE010000018.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312989 SAMN35365133-rid18223903.denovo.018, whole genome shotgun sequence	11329..11766	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJVE010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312989 SAMN35365133-rid18223903.denovo.103, whole genome shotgun sequence	11961..12752	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJVE010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312989 SAMN35365133-rid18223903.denovo.103, whole genome shotgun sequence	11961..12752	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOJVE010000215.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312989 SAMN35365133-rid18223903.guided.094, whole genome shotgun sequence	15495..15932	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJVE010000217.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312989 SAMN35365133-rid18223903.guided.106, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJVE010000217.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312989 SAMN35365133-rid18223903.guided.106, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABOJVE010000148.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312989 SAMN35365133-rid18223903.denovo.154, whole genome shotgun sequence	901..1776	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOJVE010000219.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312989 SAMN35365133-rid18223903.guided.153, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABOJVE010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312989 SAMN35365133-rid18223903.denovo.103, whole genome shotgun sequence	10617..11456	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJVE010000217.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312989 SAMN35365133-rid18223903.guided.106, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOJVE010000136.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312989 SAMN35365133-rid18223903.denovo.141, whole genome shotgun sequence	1837..3036	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJVE010000218.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312989 SAMN35365133-rid18223903.guided.138, whole genome shotgun sequence	1905..3104	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOJVE010000161.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312989 SAMN35365133-rid18223903.denovo.167, whole genome shotgun sequence	924..1483																																																						avrA	ABOJVE010000039.1	39534..40403	99.655	870	0						
GCA_033051895.1_PDT001758995.1_genomic.fna	Salmonella_enterica	0.5232	52.406 KB	26	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	-:l,v:1,6	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	3	Col(pHAD28),ColRNAI,IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	-	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:l,v:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJVH010000053.1 Salmonella enterica subsp. enterica serovar London strain FSIS22312957 SAMN35365104-rid18223863.denovo.053, whole genome shotgun sequence	12504..12941	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJVH010000168.1 Salmonella enterica subsp. enterica serovar London strain FSIS22312957 SAMN35365104-rid18223863.guided.084, whole genome shotgun sequence	15492..15929	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOJVH010000135.1 Salmonella enterica subsp. enterica serovar London strain FSIS22312957 SAMN35365104-rid18223863.denovo.138, whole genome shotgun sequence	1551..2756	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJVH010000171.1 Salmonella enterica subsp. enterica serovar London strain FSIS22312957 SAMN35365104-rid18223863.guided.144, whole genome shotgun sequence	899..2104	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOJVH010000128.1 Salmonella enterica subsp. enterica serovar London strain FSIS22312957 SAMN35365104-rid18223863.denovo.131, whole genome shotgun sequence	557..687	enterobacteriales	ColRNAI	90.83	109 / 130	ABOJVH010000116.1 Salmonella enterica subsp. enterica serovar London strain FSIS22312957 SAMN35365104-rid18223863.denovo.119, whole genome shotgun sequence	1016..1124		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJVH010000118.1 Salmonella enterica subsp. enterica serovar London strain FSIS22312957 SAMN35365104-rid18223863.denovo.121, whole genome shotgun sequence	118..259																																									avrA	ABOJVH010000018.1	63585..64454	99.425	870	0						
GCA_033051915.1_PDT001758994.1_genomic.fna	Salmonella_enterica	0.5231	57.149 KB	27	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJVG010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312986 SAMN35365119-rid18223853.denovo.061, whole genome shotgun sequence	11321..11758	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJVG010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312986 SAMN35365119-rid18223853.denovo.097, whole genome shotgun sequence	11987..12778	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJVG010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312986 SAMN35365119-rid18223853.denovo.097, whole genome shotgun sequence	11987..12778	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOJVG010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312986 SAMN35365119-rid18223853.guided.096, whole genome shotgun sequence	1257..2048	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJVG010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312986 SAMN35365119-rid18223853.guided.096, whole genome shotgun sequence	1257..2048	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOJVG010000166.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312986 SAMN35365119-rid18223853.guided.108, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABOJVG010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312986 SAMN35365119-rid18223853.denovo.097, whole genome shotgun sequence	10643..11482	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJVG010000164.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312986 SAMN35365119-rid18223853.guided.096, whole genome shotgun sequence	2553..3392	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOJVG010000116.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312986 SAMN35365119-rid18223853.denovo.120, whole genome shotgun sequence	1784..2983	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJVG010000167.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312986 SAMN35365119-rid18223853.guided.123, whole genome shotgun sequence	1815..3014	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOJVG010000119.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312986 SAMN35365119-rid18223853.denovo.124, whole genome shotgun sequence	2159..2718																																																						avrA	ABOJVG010000015.1	81676..82545	99.655	870	0						
GCA_033051935.1_PDT001758993.1_genomic.fna	Salmonella_enterica	0.5231	40.088 KB	39	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aadA1,aadA1,aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aadA1	99.75	792/792	ABOJVI010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312987 SAMN35365120-rid18223843.denovo.056, whole genome shotgun sequence	10996..11787	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJVI010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312987 SAMN35365120-rid18223843.denovo.056, whole genome shotgun sequence	10996..11787	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOJVI010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312987 SAMN35365120-rid18223843.denovo.073, whole genome shotgun sequence	11361..11798	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOJVI010000211.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312987 SAMN35365120-rid18223843.denovo.218, whole genome shotgun sequence	93..908	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aac(6')-Iaa	97.49	438/438	ABOJVI010000231.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312987 SAMN35365120-rid18223843.guided.109, whole genome shotgun sequence	14096..14533	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJVI010000232.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312987 SAMN35365120-rid18223843.guided.113, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJVI010000232.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312987 SAMN35365120-rid18223843.guided.113, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOJVI010000234.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312987 SAMN35365120-rid18223843.guided.215, whole genome shotgun sequence	127..942	Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	sul1	100	840/840	ABOJVI010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312987 SAMN35365120-rid18223843.denovo.056, whole genome shotgun sequence	12292..13131	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJVI010000232.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312987 SAMN35365120-rid18223843.guided.113, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOJVI010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312987 SAMN35365120-rid18223843.denovo.056, whole genome shotgun sequence	25648..26847	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJVI010000233.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312987 SAMN35365120-rid18223843.guided.155, whole genome shotgun sequence	1838..3037	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOJVI010000151.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312987 SAMN35365120-rid18223843.denovo.156, whole genome shotgun sequence	2135..2694																																																						avrA	ABOJVI010000037.1	39526..40395	99.655	870	0						
GCA_033051955.1_PDT001758992.1_genomic.fna	Salmonella_enterica	0.5236	61.437 KB	21	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	-:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	-	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	I -:z4,z23:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOJVJ010000018.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS22312988 SAMN35365121-rid18223833.denovo.018, whole genome shotgun sequence	11378..11815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOJVJ010000136.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS22312988 SAMN35365121-rid18223833.guided.049, whole genome shotgun sequence	16453..16890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	98.4	374 / 374	ABOJVJ010000114.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS22312988 SAMN35365121-rid18223833.denovo.117, whole genome shotgun sequence	574..947																																																						avrA	ABOJVJ010000006.1	83905..84774	99.425	870	0						
GCA_033051975.1_PDT001758991.1_genomic.fna	Salmonella_enterica	0.5208	126.522 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJVK010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313001 SAMN35365101-rid18223823.denovo.01, whole genome shotgun sequence	241578..242015	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJVK010000078.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313001 SAMN35365101-rid18223823.guided.38, whole genome shotgun sequence	14160..14597	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJVK010000051.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313001 SAMN35365101-rid18223823.denovo.54, whole genome shotgun sequence	6775..7417	enterobacteriales	IncFII(S)	100	262 / 262	ABOJVK010000055.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313001 SAMN35365101-rid18223823.denovo.58, whole genome shotgun sequence	7106..7367		enterobacteriales	IncX1	98.93	374 / 374	ABOJVK010000036.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22313001 SAMN35365101-rid18223823.denovo.36, whole genome shotgun sequence	32011..32384																																									avrA	ABOJVK010000004.1	149426..150295	99.54	870	0						
GCA_033052015.1_PDT001758986.1_genomic.fna	Salmonella_enterica	0.5235	43.532 KB	42	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJVP010000010.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312984 SAMN35365107-rid18223773.denovo.010, whole genome shotgun sequence	12467..12904	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJVP010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312984 SAMN35365107-rid18223773.denovo.115, whole genome shotgun sequence	11983..12774	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJVP010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312984 SAMN35365107-rid18223773.denovo.115, whole genome shotgun sequence	11983..12774	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOJVP010000219.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312984 SAMN35365107-rid18223773.guided.128, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJVP010000220.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312984 SAMN35365107-rid18223773.guided.166, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJVP010000220.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312984 SAMN35365107-rid18223773.guided.166, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOJVP010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312984 SAMN35365107-rid18223773.denovo.115, whole genome shotgun sequence	10639..11478	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJVP010000220.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312984 SAMN35365107-rid18223773.guided.166, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOJVP010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312984 SAMN35365107-rid18223773.denovo.132, whole genome shotgun sequence	1827..3026	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJVP010000222.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312984 SAMN35365107-rid18223773.guided.182, whole genome shotgun sequence	968..2167	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOJVP010000148.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312984 SAMN35365107-rid18223773.denovo.150, whole genome shotgun sequence	5310..5869																																																						avrA	ABOJVP010000036.1	43304..44173	99.655	870	0						
GCA_033052035.1_PDT001758988.1_genomic.fna	Salmonella_enterica	0.5213	245.651 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJVM010000001.1 Salmonella enterica strain 23MO05CH01-S1 SAMN35365089-rid18223793.denovo.01, whole genome shotgun sequence	373587..374024	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.77	359/438	ABOJVM010000049.1 Salmonella enterica strain 23MO05CH01-S1 SAMN35365089-rid18223793.guided.40, whole genome shotgun sequence	1..359	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOJVM010000030.1 Salmonella enterica strain 23MO05CH01-S1 SAMN35365089-rid18223793.denovo.30, whole genome shotgun sequence	9109..9668																																																						avrA	ABOJVM010000002.1	150300..151169	99.655	870	0						
GCA_033052055.1_PDT001758987.1_genomic.fna	Salmonella_enterica	0.5229	46.105 KB	35	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	-:f,g:-	5	aac(6')-Iaa,aadA2b,aadA2b,aac(6')-Iaa,fosA7,fosA7,sul1,sul1,tet(A),tet(A)	1	parC_p.T57S	2	Col(BS512),Col156	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	-	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOJVR010000013.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312958 SAMN35365105-rid18223783.denovo.013, whole genome shotgun sequence	11438..11875	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOJVR010000060.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312958 SAMN35365105-rid18223783.denovo.061, whole genome shotgun sequence	22100..22879	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABOJVR010000230.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312958 SAMN35365105-rid18223783.guided.060, whole genome shotgun sequence	22141..22920	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	98.17	438/438	ABOJVR010000231.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312958 SAMN35365105-rid18223783.guided.065, whole genome shotgun sequence	15046..15483	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOJVR010000066.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312958 SAMN35365105-rid18223783.denovo.068, whole genome shotgun sequence	2742..3164	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOJVR010000232.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312958 SAMN35365105-rid18223783.guided.082, whole genome shotgun sequence	16731..17153	Fosfomycin	LAPJ01000014	sul1	100	840/840	ABOJVR010000060.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312958 SAMN35365105-rid18223783.denovo.061, whole genome shotgun sequence	23384..24223	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJVR010000230.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312958 SAMN35365105-rid18223783.guided.060, whole genome shotgun sequence	23425..24264	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOJVR010000124.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312958 SAMN35365105-rid18223783.denovo.129, whole genome shotgun sequence	6632..7831	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJVR010000235.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312958 SAMN35365105-rid18223783.guided.163, whole genome shotgun sequence	1882..3081	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(BS512)	100	233 / 233	ABOJVR010000182.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312958 SAMN35365105-rid18223783.denovo.188, whole genome shotgun sequence	400..632	enterobacteriales	Col156	94.81	154 / 154	ABOJVR010000159.1 Salmonella enterica subsp. enterica serovar Derby strain FSIS22312958 SAMN35365105-rid18223783.denovo.165, whole genome shotgun sequence	792..945																																																avrA	ABOJVR010000039.1	39484..40353	99.655	870	0						
GCA_033052095.1_PDT001758985.1_genomic.fna	Salmonella_enterica	0.5223	354.37 KB	5	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJVO010000001.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22312956 SAMN35365103-rid18223763.denovo.01, whole genome shotgun sequence	145502..145939	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJVO010000022.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22312956 SAMN35365103-rid18223763.denovo.25, whole genome shotgun sequence	5973..6809	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOJVO010000022.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22312956 SAMN35365103-rid18223763.denovo.25, whole genome shotgun sequence	6809..7611	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJVO010000022.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22312956 SAMN35365103-rid18223763.denovo.25, whole genome shotgun sequence	6809..7612	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJVO010000022.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22312956 SAMN35365103-rid18223763.denovo.25, whole genome shotgun sequence	6809..7612	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJVO010000022.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22312956 SAMN35365103-rid18223763.denovo.25, whole genome shotgun sequence	6809..7612	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOJVO010000038.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22312956 SAMN35365103-rid18223763.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJVO010000040.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22312956 SAMN35365103-rid18223763.guided.29, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOJVO010000040.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22312956 SAMN35365103-rid18223763.guided.29, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJVO010000040.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22312956 SAMN35365103-rid18223763.guided.29, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJVO010000040.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22312956 SAMN35365103-rid18223763.guided.29, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJVO010000040.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22312956 SAMN35365103-rid18223763.guided.29, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOJVO010000026.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22312956 SAMN35365103-rid18223763.denovo.31, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJVO010000041.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS22312956 SAMN35365103-rid18223763.guided.30, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJVO010000002.1	573274..574143	99.655	870	0						
GCA_033052115.1_PDT001758984.1_genomic.fna	Salmonella_enterica	0.5229	61.886 KB	24	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJVQ010000005.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312955 SAMN35365102-rid18223753.denovo.005, whole genome shotgun sequence	83566..84003	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJVQ010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312955 SAMN35365102-rid18223753.denovo.061, whole genome shotgun sequence	22731..23522	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJVQ010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312955 SAMN35365102-rid18223753.denovo.061, whole genome shotgun sequence	22731..23522	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOJVQ010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312955 SAMN35365102-rid18223753.guided.074, whole genome shotgun sequence	7389..7826	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJVQ010000143.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312955 SAMN35365102-rid18223753.guided.087, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJVQ010000143.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312955 SAMN35365102-rid18223753.guided.087, whole genome shotgun sequence	1260..2051	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOJVQ010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312955 SAMN35365102-rid18223753.denovo.061, whole genome shotgun sequence	21387..22226	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJVQ010000143.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312955 SAMN35365102-rid18223753.guided.087, whole genome shotgun sequence	2556..3395	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOJVQ010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312955 SAMN35365102-rid18223753.denovo.061, whole genome shotgun sequence	7671..8870	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJVQ010000144.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312955 SAMN35365102-rid18223753.guided.100, whole genome shotgun sequence	1316..2515	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOJVQ010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312955 SAMN35365102-rid18223753.denovo.098, whole genome shotgun sequence	7783..8342																																																						avrA	ABOJVQ010000008.1	81424..82293	99.655	870	0						
GCA_033052135.1_PDT001758983.1_genomic.fna	Salmonella_enterica	0.5228	43.425 KB	36	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJVS010000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312998 SAMN35365090-rid18223743.denovo.018, whole genome shotgun sequence	12390..12827	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJVS010000196.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312998 SAMN35365090-rid18223743.guided.109, whole genome shotgun sequence	14113..14550	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABOJVS010000037.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312998 SAMN35365090-rid18223743.denovo.037, whole genome shotgun sequence	21681..22496	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOJVS010000194.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312998 SAMN35365090-rid18223743.guided.049, whole genome shotgun sequence	21722..22537	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOJVS010000037.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312998 SAMN35365090-rid18223743.denovo.037, whole genome shotgun sequence	24673..25872	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJVS010000194.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312998 SAMN35365090-rid18223743.guided.049, whole genome shotgun sequence	24714..25913	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOJVS010000142.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22312998 SAMN35365090-rid18223743.denovo.146, whole genome shotgun sequence	371..501																																																						avrA	ABOJVS010000017.1	63844..64713	99.885	870	0						
GCA_033052155.1_PDT001758982.1_genomic.fna	Salmonella_enterica	0.5204	211.752 KB	8	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	1	IncFIB(AP001918)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJVT010000001.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312999 SAMN35365091-rid18223733.denovo.01, whole genome shotgun sequence	438812..439249	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOJVT010000040.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312999 SAMN35365091-rid18223733.denovo.43, whole genome shotgun sequence	6180..6982	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJVT010000040.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312999 SAMN35365091-rid18223733.denovo.43, whole genome shotgun sequence	6180..6983	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJVT010000040.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312999 SAMN35365091-rid18223733.denovo.43, whole genome shotgun sequence	6180..6983	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJVT010000040.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312999 SAMN35365091-rid18223733.denovo.43, whole genome shotgun sequence	6180..6983	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOJVT010000040.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312999 SAMN35365091-rid18223733.denovo.43, whole genome shotgun sequence	5440..6180	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOJVT010000040.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312999 SAMN35365091-rid18223733.denovo.43, whole genome shotgun sequence	5440..6180	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABOJVT010000065.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312999 SAMN35365091-rid18223733.guided.38, whole genome shotgun sequence	10204..10641	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOJVT010000066.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312999 SAMN35365091-rid18223733.guided.47, whole genome shotgun sequence	869..1671	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJVT010000066.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312999 SAMN35365091-rid18223733.guided.47, whole genome shotgun sequence	868..1671	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJVT010000066.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312999 SAMN35365091-rid18223733.guided.47, whole genome shotgun sequence	868..1671	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJVT010000066.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312999 SAMN35365091-rid18223733.guided.47, whole genome shotgun sequence	868..1671	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOJVT010000066.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312999 SAMN35365091-rid18223733.guided.47, whole genome shotgun sequence	1671..2411	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOJVT010000066.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312999 SAMN35365091-rid18223733.guided.47, whole genome shotgun sequence	1671..2411	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOJVT010000036.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312999 SAMN35365091-rid18223733.denovo.39, whole genome shotgun sequence	1834..2515																																																						avrA	ABOJVT010000002.1	174733..175602	98.966	870	0						
GCA_033052175.1_PDT001758981.1_genomic.fna	Salmonella_enterica	0.5218	84.71 KB	17	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX1	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJVU010000011.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.denovo.011, whole genome shotgun sequence	93644..94081	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJVU010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.denovo.058, whole genome shotgun sequence	22835..23626	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJVU010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.denovo.058, whole genome shotgun sequence	22835..23626	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOJVU010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.denovo.089, whole genome shotgun sequence	2513..3538	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOJVU010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.denovo.089, whole genome shotgun sequence	1508..2284	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOJVU010000132.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.guided.049, whole genome shotgun sequence	15475..15912	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJVU010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.guided.080, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJVU010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.guided.080, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOJVU010000137.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.guided.101, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOJVU010000137.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.guided.101, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOJVU010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.denovo.090, whole genome shotgun sequence	1591..2804	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOJVU010000136.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.guided.099, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOJVU010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.denovo.058, whole genome shotgun sequence	21491..22330	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJVU010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.guided.080, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOJVU010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.denovo.058, whole genome shotgun sequence	7775..8974	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJVU010000138.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.guided.106, whole genome shotgun sequence	1883..3082	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOJVU010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.denovo.067, whole genome shotgun sequence	13980..14539	enterobacteriales	IncX1	98.66	374 / 374	ABOJVU010000115.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22312996 SAMN35364915-rid18223723.denovo.122, whole genome shotgun sequence	242..615																																																avrA	ABOJVU010000014.1	94091..94960	99.655	870	0						
GCA_033052195.1_PDT001758980.1_genomic.fna	Salmonella_enterica	0.5182	53.962 KB	28	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	-:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJVV010000018.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312997 SAMN35364916-rid18223713.denovo.018, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJVV010000115.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312997 SAMN35364916-rid18223713.denovo.119, whole genome shotgun sequence	4660..5496	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOJVV010000115.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312997 SAMN35364916-rid18223713.denovo.119, whole genome shotgun sequence	5496..6298	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJVV010000115.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312997 SAMN35364916-rid18223713.denovo.119, whole genome shotgun sequence	5496..6299	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJVV010000115.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312997 SAMN35364916-rid18223713.denovo.119, whole genome shotgun sequence	5496..6299	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJVV010000115.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312997 SAMN35364916-rid18223713.denovo.119, whole genome shotgun sequence	5496..6299	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABOJVV010000206.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312997 SAMN35364916-rid18223713.guided.085, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJVV010000208.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312997 SAMN35364916-rid18223713.guided.118, whole genome shotgun sequence	2356..3192	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOJVV010000208.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312997 SAMN35364916-rid18223713.guided.118, whole genome shotgun sequence	1554..2356	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJVV010000208.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312997 SAMN35364916-rid18223713.guided.118, whole genome shotgun sequence	1553..2356	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJVV010000208.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312997 SAMN35364916-rid18223713.guided.118, whole genome shotgun sequence	1553..2356	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJVV010000208.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312997 SAMN35364916-rid18223713.guided.118, whole genome shotgun sequence	1553..2356	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOJVV010000054.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312997 SAMN35364916-rid18223713.denovo.054, whole genome shotgun sequence	28959..29285	enterobacteriales	IncHI2A	99.52	630 / 630	ABOJVV010000130.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312997 SAMN35364916-rid18223713.denovo.134, whole genome shotgun sequence	1569..2198		enterobacteriales	IncX1	100	373 / 373	ABOJVV010000128.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312997 SAMN35364916-rid18223713.denovo.132, whole genome shotgun sequence	2218..2590																																									avrA	ABOJVV010000036.1	39489..40358	99.655	870	0						
GCA_033052235.1_PDT001758979.1_genomic.fna	Salmonella_enterica	0.5215	48.868 KB	36	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	-:i:-	3	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,tet(B),tet(B)	0		3	Col(MG828),Col(pHAD28),IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	-	Salmonella enterica subspecies enterica (subspecies I)	I -:i:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJVX010000068.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312993 SAMN35364913-rid18223703.denovo.069, whole genome shotgun sequence	12503..12940	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOJVX010000139.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312993 SAMN35364913-rid18223703.denovo.142, whole genome shotgun sequence	555..1370	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	EU722351	aac(6')-Iaa	100	438/438	ABOJVX010000206.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312993 SAMN35364913-rid18223703.guided.068, whole genome shotgun sequence	14097..14534	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOJVX010000209.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312993 SAMN35364913-rid18223703.guided.161, whole genome shotgun sequence	1840..2655	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Kanamycin	EU722351	tet(B)	100	1206/1206	ABOJVX010000115.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312993 SAMN35364913-rid18223703.denovo.118, whole genome shotgun sequence	2352..3557	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJVX010000210.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312993 SAMN35364913-rid18223703.guided.162, whole genome shotgun sequence	2383..3588	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(MG828)	91.98	262 / 262	ABOJVX010000148.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312993 SAMN35364913-rid18223703.denovo.151, whole genome shotgun sequence	2133..2394	enterobacteriales	Col(pHAD28)	93.8	129 / 131	ABOJVX010000148.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312993 SAMN35364913-rid18223703.denovo.151, whole genome shotgun sequence	3388..3516		enterobacteriales	IncX1	98.66	374 / 374	ABOJVX010000195.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS22312993 SAMN35364913-rid18223703.denovo.200, whole genome shotgun sequence	118..491																																									avrA	ABOJVX010000017.1	61696..62565	99.885	870	0						
GCA_033052255.1_PDT001758978.1_genomic.fna	Salmonella_enterica	0.5225	58.823 KB	24	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	2	aac(6')-Iaa,aac(6')-Iaa,tet(C),tet(C)	1	parC_p.T57S	3	Col(pHAD28),Col440I,ColE10	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOJVY010000065.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22312995 SAMN35364914-rid18223693.denovo.067, whole genome shotgun sequence	11355..11792	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJVY010000163.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22312995 SAMN35364914-rid18223693.guided.066, whole genome shotgun sequence	14096..14533	Amikacin, Tobramycin	NC_003197	tet(C)	99.83	1191/1191	ABOJVY010000108.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22312995 SAMN35364914-rid18223693.denovo.112, whole genome shotgun sequence	1317..2507	Doxycycline, Tetracycline	AF055345	tet(C)	99.83	1191/1191	ABOJVY010000165.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22312995 SAMN35364914-rid18223693.guided.111, whole genome shotgun sequence	1469..2659	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOJVY010000107.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22312995 SAMN35364914-rid18223693.denovo.110, whole genome shotgun sequence	557..687	enterobacteriales	Col440I	94.74	114 / 114	ABOJVY010000121.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22312995 SAMN35364914-rid18223693.denovo.125, whole genome shotgun sequence	787..900		enterobacteriales	ColE10	100	177 / 177	ABOJVY010000104.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22312995 SAMN35364914-rid18223693.denovo.107, whole genome shotgun sequence	3465..3641																																									avrA	ABOJVY010000038.1	43681..44550	99.54	870	0						
GCA_033052875.1_PDT001758977.1_genomic.fna	Salmonella_enterica	0.5193	45.366 KB	36	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJVZ010000028.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312992 SAMN35364837-rid18223683.denovo.028, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJVZ010000253.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312992 SAMN35364837-rid18223683.guided.119, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOJVZ010000043.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312992 SAMN35364837-rid18223683.denovo.043, whole genome shotgun sequence	22833..23159	enterobacteriales	IncHI2A	99.52	630 / 630	ABOJVZ010000164.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312992 SAMN35364837-rid18223683.denovo.167, whole genome shotgun sequence	1568..2197		enterobacteriales	IncX1	100	373 / 373	ABOJVZ010000195.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312992 SAMN35364837-rid18223683.denovo.198, whole genome shotgun sequence	1122..1494																																									avrA	ABOJVZ010000039.1	39504..40373	99.655	870	0						
GCA_033052895.1_PDT001758975.1_genomic.fna	Salmonella_enterica	0.5224	62.98 KB	24	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJWA010000022.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312990 SAMN35364835-rid18223663.denovo.022, whole genome shotgun sequence	15432..15869	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJWA010000169.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312990 SAMN35364835-rid18223663.guided.056, whole genome shotgun sequence	15444..15881	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOJWA010000109.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312990 SAMN35364835-rid18223663.denovo.111, whole genome shotgun sequence	2159..2840	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABOJWA010000088.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22312990 SAMN35364835-rid18223663.denovo.089, whole genome shotgun sequence	1609..2105																																																avrA	ABOJWA010000014.1	81842..82711	98.966	870	0						
GCA_033052915.1_PDT001758976.1_genomic.fna	Salmonella_enterica	0.5211	46.492 KB	31	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	12	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-220,blaTEM-32,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-20,blaTEM-1C,blaTEM-1B,blaTEM-220,blaTEM-32,blaTEM-135,blaTEM-126,blaTEM-106,blaTEM-20,blaTEM-1C,blaTEM-1B,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJWB010000061.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.denovo.062, whole genome shotgun sequence	12482..12919	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJWB010000135.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.denovo.139, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOJWB010000135.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.denovo.139, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOJWB010000255.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.guided.097, whole genome shotgun sequence	2574..3011	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJWB010000258.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.guided.162, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOJWB010000258.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.guided.162, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	blaTEM-220	99.77	861/861	ABOJWB010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.denovo.056, whole genome shotgun sequence	192..1052	Unknown Beta-lactam	KM998962	blaTEM-32	99.77	861/861	ABOJWB010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.denovo.056, whole genome shotgun sequence	192..1052	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	CXLQ01000061	blaTEM-135	99.77	861/861	ABOJWB010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.denovo.056, whole genome shotgun sequence	192..1052	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.77	861/861	ABOJWB010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.denovo.056, whole genome shotgun sequence	192..1052	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.77	861/861	ABOJWB010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.denovo.056, whole genome shotgun sequence	192..1052	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-20	99.77	861/861	ABOJWB010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.denovo.056, whole genome shotgun sequence	192..1052	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EU527189	blaTEM-1C	99.77	861/861	ABOJWB010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.denovo.056, whole genome shotgun sequence	192..1052	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1B	99.77	861/861	ABOJWB010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.denovo.056, whole genome shotgun sequence	192..1052	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-220	99.77	861/861	ABOJWB010000257.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.guided.136, whole genome shotgun sequence	904..1764	Unknown Beta-lactam	KM998962	blaTEM-32	99.77	861/861	ABOJWB010000257.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.guided.136, whole genome shotgun sequence	904..1764	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	CXLQ01000061	blaTEM-135	99.77	861/861	ABOJWB010000257.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.guided.136, whole genome shotgun sequence	904..1764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	GQ896333	blaTEM-126	99.77	861/861	ABOJWB010000257.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.guided.136, whole genome shotgun sequence	904..1764	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY628199	blaTEM-106	99.77	861/861	ABOJWB010000257.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.guided.136, whole genome shotgun sequence	904..1764	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY101578	blaTEM-20	99.77	861/861	ABOJWB010000257.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.guided.136, whole genome shotgun sequence	904..1764	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EU527189	blaTEM-1C	99.77	861/861	ABOJWB010000257.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.guided.136, whole genome shotgun sequence	904..1764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	FJ560503	blaTEM-1B	99.77	861/861	ABOJWB010000257.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.guided.136, whole genome shotgun sequence	904..1764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(B)	100	1206/1206	ABOJWB010000166.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.denovo.172, whole genome shotgun sequence	2174..3379	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJWB010000259.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.guided.169, whole genome shotgun sequence	2205..3410	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOJWB010000160.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.denovo.165, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABOJWB010000135.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.denovo.139, whole genome shotgun sequence	1831..2092		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOJWB010000141.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.denovo.145, whole genome shotgun sequence	3873..4014		enterobacteriales	IncX1	100	373 / 373	ABOJWB010000172.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22312991 SAMN35364836-rid18223673.denovo.178, whole genome shotgun sequence	2732..3104																																		avrA	ABOJWB010000033.1	39484..40353	99.655	870	0						
GCA_033054565.1_PDT001758730.1_genomic.fna	Salmonella_enterica	0.521	406.452 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJWH010000001.1 Salmonella enterica strain 23MO05CL01-S1 SAMN35364223-rid18223023.denovo.01, whole genome shotgun sequence	162124..162561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJWH010000031.1 Salmonella enterica strain 23MO05CL01-S1 SAMN35364223-rid18223023.guided.21, whole genome shotgun sequence	8568..9005	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJWH010000020.1 Salmonella enterica strain 23MO05CL01-S1 SAMN35364223-rid18223023.denovo.22, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOJWH010000021.1 Salmonella enterica strain 23MO05CL01-S1 SAMN35364223-rid18223023.denovo.23, whole genome shotgun sequence	3388..3649																																																avrA	ABOJWH010000002.1	585481..586350	99.54	870	0						
GCA_033054585.1_PDT001758729.1_genomic.fna	Salmonella_enterica	0.5221	243.86 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJWI010000001.1 Salmonella enterica strain PNUSAS351066 SAMN35364214-rid18220703.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJWI010000042.1 Salmonella enterica strain PNUSAS351066 SAMN35364214-rid18220703.guided.33, whole genome shotgun sequence	10772..11209	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOJWI010000019.1 Salmonella enterica strain PNUSAS351066 SAMN35364214-rid18220703.denovo.19, whole genome shotgun sequence	48412..49054	enterobacteriales	IncFII(S)	100	262 / 262	ABOJWI010000019.1 Salmonella enterica strain PNUSAS351066 SAMN35364214-rid18220703.denovo.19, whole genome shotgun sequence	64139..64400																																																avrA	ABOJWI010000008.1	174651..175519	100	869	0						
GCA_033054605.1_PDT001758728.1_genomic.fna	Salmonella_enterica	0.5211	714.135 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOJWJ010000001.1 Salmonella enterica strain PNUSAS351084 SAMN35364724-rid18220693.denovo.01, whole genome shotgun sequence	683864..684301	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOJWJ010000022.1 Salmonella enterica strain PNUSAS351084 SAMN35364724-rid18220693.guided.17, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOJWJ010000006.1 Salmonella enterica strain PNUSAS351084 SAMN35364724-rid18220693.denovo.06, whole genome shotgun sequence	268413..268946																																																						avrA	ABOJWJ010000002.1	563126..563995	99.77	870	0						
GCA_033054625.1_PDT001758727.1_genomic.fna	Salmonella_enterica	0.5212	129.191 KB	11	aroC_130,dnaN_97,hemD_25,hisD_125,purE_84,sucA_9,thrA_101	365	3,10:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_130	dnaN	100	100	dnaN_97	hemD	100	100	hemD_25	hisD	100	100	hisD_125	purE	100	100	purE_84	sucA	100	100	sucA_9	thrA	100	100	thrA_101	3,10	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Weltevreden		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOJWK010000005.1 Salmonella enterica strain PNUSAS351080 SAMN35364211-rid18221773.denovo.005, whole genome shotgun sequence	261764..262201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABOJWK010000107.1 Salmonella enterica strain PNUSAS351080 SAMN35364211-rid18221773.guided.037, whole genome shotgun sequence	31896..32333	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	99.62	262 / 262	ABOJWK010000046.1 Salmonella enterica strain PNUSAS351080 SAMN35364211-rid18221773.denovo.048, whole genome shotgun sequence	6639..6900																																																						avrA	ABOJWK010000004.1	93997..94866	98.851	870	0						
GCA_033054645.1_PDT001758726.1_genomic.fna	Salmonella_enterica	0.5219	255.292 KB	6	aroC_43,dnaN_41,hemD_16,hisD_42,purE_34,sucA_13,thrA_23	305	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_23	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJWL010000002.1 Salmonella enterica strain PNUSAS351069 SAMN35364217-rid18220173.denovo.02, whole genome shotgun sequence	577425..577862	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJWL010000039.1 Salmonella enterica strain PNUSAS351069 SAMN35364217-rid18220173.guided.19, whole genome shotgun sequence	42408..42845	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033054665.1_PDT001758724.1_genomic.fna	Salmonella_enterica	0.5208	196.383 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJWM010000003.1 Salmonella enterica strain PNUSAS351081 SAMN35364727-rid18220163.denovo.03, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOJWM010000026.1 Salmonella enterica strain PNUSAS351081 SAMN35364727-rid18220163.denovo.26, whole genome shotgun sequence	58833..59612	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABOJWM010000055.1 Salmonella enterica strain PNUSAS351081 SAMN35364727-rid18220163.guided.33, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOJWM010000061.1 Salmonella enterica strain PNUSAS351081 SAMN35364727-rid18220163.guided.53, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOJWM010000040.1 Salmonella enterica strain PNUSAS351081 SAMN35364727-rid18220163.denovo.42, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOJWM010000060.1 Salmonella enterica strain PNUSAS351081 SAMN35364727-rid18220163.guided.50, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABOJWM010000040.1 Salmonella enterica strain PNUSAS351081 SAMN35364727-rid18220163.denovo.42, whole genome shotgun sequence	6603..7817	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABOJWM010000058.1 Salmonella enterica strain PNUSAS351081 SAMN35364727-rid18220163.guided.46, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOJWM010000059.1 Salmonella enterica strain PNUSAS351081 SAMN35364727-rid18220163.guided.47, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABOJWM010000040.1 Salmonella enterica strain PNUSAS351081 SAMN35364727-rid18220163.denovo.42, whole genome shotgun sequence	4491..5666	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABOJWM010000057.1 Salmonella enterica strain PNUSAS351081 SAMN35364727-rid18220163.guided.45, whole genome shotgun sequence	382..1557	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																											gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	100	643 / 643	ABOJWM010000031.1 Salmonella enterica strain PNUSAS351081 SAMN35364727-rid18220163.denovo.32, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABOJWM010000031.1 Salmonella enterica strain PNUSAS351081 SAMN35364727-rid18220163.denovo.32, whole genome shotgun sequence	9325..9586																																																avrA	ABOJWM010000001.1	506669..507538	99.885	870	0						
GCA_033054685.1_PDT001758718.1_genomic.fna	Salmonella_enterica	0.5215	333.003 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,qnrB19,qnrB19,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col(pHAD28),Col(pHAD28),IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJWP010000001.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJWP010000024.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.denovo.24, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJWP010000024.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.denovo.24, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOJWP010000033.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.denovo.37, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOJWP010000033.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.denovo.37, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOJWP010000048.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.denovo.57, whole genome shotgun sequence	92..907	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	aadA1	99.75	792/792	ABOJWP010000059.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.guided.35, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJWP010000059.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.guided.35, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOJWP010000061.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.guided.38, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOJWP010000061.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.guided.38, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOJWP010000062.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.guided.40, whole genome shotgun sequence	5977..6414	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOJWP010000065.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.guided.56, whole genome shotgun sequence	126..941	Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	X62115	blaCTX-M-65	100	876/876	ABOJWP010000044.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.denovo.51, whole genome shotgun sequence	1174..2049	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOJWP010000063.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.guided.50, whole genome shotgun sequence	1214..2089	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	qnrB19	100	645/645	ABOJWP010000043.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.denovo.49, whole genome shotgun sequence	2189..2833	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOJWP010000064.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.guided.54, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul1	100	840/840	ABOJWP010000024.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.denovo.24, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJWP010000059.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.guided.35, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOJWP010000024.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.denovo.24, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJWP010000058.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.guided.30, whole genome shotgun sequence	4687..5886	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOJWP010000040.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.denovo.46, whole genome shotgun sequence	3134..3264	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJWP010000043.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.denovo.49, whole genome shotgun sequence	1533..1663		enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOJWP010000045.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.denovo.52, whole genome shotgun sequence	1479..1609		enterobacteriales	Col(pHAD28)	92.5	120 / 131	ABOJWP010000046.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.denovo.53, whole genome shotgun sequence	1958..2077		enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOJWP010000029.1 Salmonella enterica strain PNUSAS351082 SAMN35364728-rid18220663.denovo.31, whole genome shotgun sequence	9109..9668																											avrA	ABOJWP010000003.1	94085..94954	99.655	870	0						
GCA_033054705.1_PDT001758719.1_genomic.fna	Salmonella_enterica	0.5212	416.621 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJWO010000001.1 Salmonella enterica strain PNUSAS351079 SAMN35364729-rid18220673.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJWO010000034.1 Salmonella enterica strain PNUSAS351079 SAMN35364729-rid18220673.guided.18, whole genome shotgun sequence	9609..10046	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOJWO010000015.1 Salmonella enterica strain PNUSAS351079 SAMN35364729-rid18220673.denovo.15, whole genome shotgun sequence	28407..29552	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOJWO010000035.1 Salmonella enterica strain PNUSAS351079 SAMN35364729-rid18220673.guided.19, whole genome shotgun sequence	25020..26165	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJWO010000015.1 Salmonella enterica strain PNUSAS351079 SAMN35364729-rid18220673.denovo.15, whole genome shotgun sequence	38535..38676	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJWO010000035.1 Salmonella enterica strain PNUSAS351079 SAMN35364729-rid18220673.guided.19, whole genome shotgun sequence	15896..16037																																																avrA	ABOJWO010000002.1	183135..184004	98.966	870	0						
GCA_033054725.1_PDT001758723.1_genomic.fna	Salmonella_enterica	0.5214	666.01 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJWN010000001.1 Salmonella enterica strain PNUSAS351072 SAMN35364220-rid18221763.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJWN010000029.1 Salmonella enterica strain PNUSAS351072 SAMN35364220-rid18221763.guided.24, whole genome shotgun sequence	8113..8550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJWN010000021.1 Salmonella enterica strain PNUSAS351072 SAMN35364220-rid18221763.denovo.23, whole genome shotgun sequence	6828..7470	enterobacteriales	IncFII(S)	100	262 / 262	ABOJWN010000022.1 Salmonella enterica strain PNUSAS351072 SAMN35364220-rid18221763.denovo.25, whole genome shotgun sequence	3340..3601																																																avrA	ABOJWN010000002.1	553636..554505	99.54	870	0						
GCA_033054735.1_PDT001758717.1_genomic.fna	Salmonella_enterica	0.5214	477.515 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJWQ010000001.1 Salmonella enterica strain PNUSAS351067 SAMN35364215-rid18221743.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJWQ010000028.1 Salmonella enterica strain PNUSAS351067 SAMN35364215-rid18221743.guided.23, whole genome shotgun sequence	1313..1750	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABOJWQ010000023.1 Salmonella enterica strain PNUSAS351067 SAMN35364215-rid18221743.denovo.26, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJWQ010000018.1 Salmonella enterica strain PNUSAS351067 SAMN35364215-rid18221743.denovo.18, whole genome shotgun sequence	6817..7459		enterobacteriales	IncFII(S)	100	262 / 262	ABOJWQ010000020.1 Salmonella enterica strain PNUSAS351067 SAMN35364215-rid18221743.denovo.20, whole genome shotgun sequence	2258..2519																																									avrA	ABOJWQ010000002.1	553636..554505	99.54	870	0						
GCA_033054765.1_PDT001758715.1_genomic.fna	Salmonella_enterica	0.5217	264.121 KB	7	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJWR010000001.1 Salmonella enterica strain PNUSAS351070 SAMN35364218-rid18222993.denovo.01, whole genome shotgun sequence	179115..179552	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJWR010000043.1 Salmonella enterica strain PNUSAS351070 SAMN35364218-rid18222993.guided.28, whole genome shotgun sequence	4790..5227	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOJWR010000020.1 Salmonella enterica strain PNUSAS351070 SAMN35364218-rid18222993.denovo.20, whole genome shotgun sequence	62291..63496	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJWR010000044.1 Salmonella enterica strain PNUSAS351070 SAMN35364218-rid18222993.guided.30, whole genome shotgun sequence	443..1648	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOJWR010000031.1 Salmonella enterica strain PNUSAS351070 SAMN35364218-rid18222993.denovo.35, whole genome shotgun sequence	547..675	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJWR010000020.1 Salmonella enterica strain PNUSAS351070 SAMN35364218-rid18222993.denovo.20, whole genome shotgun sequence	69882..70023																																																avrA	ABOJWR010000004.1	147023..147892	98.966	870	0						
GCA_033054805.1_PDT001758708.1_genomic.fna	Salmonella_enterica	0.5197	148.444 KB	10	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFII(pSE11),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJWT010000014.1 Salmonella enterica strain 23MO05CG01-S1 SAMN35364224-rid18220633.denovo.14, whole genome shotgun sequence	80588..81025	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJWT010000079.1 Salmonella enterica strain 23MO05CG01-S1 SAMN35364224-rid18220633.guided.44, whole genome shotgun sequence	12247..12684	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABOJWT010000037.1 Salmonella enterica strain 23MO05CG01-S1 SAMN35364224-rid18220633.denovo.37, whole genome shotgun sequence	12987..13246	enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOJWT010000043.1 Salmonella enterica strain 23MO05CG01-S1 SAMN35364224-rid18220633.denovo.45, whole genome shotgun sequence	4123..4264		enterobacteriales	IncX1	100	373 / 373	ABOJWT010000046.1 Salmonella enterica strain 23MO05CG01-S1 SAMN35364224-rid18220633.denovo.49, whole genome shotgun sequence	2153..2525																																									avrA	ABOJWT010000016.1	100719..101588	99.655	870	0						
GCA_033054825.1_PDT001758710.1_genomic.fna	Salmonella_enterica	0.5215	490.04 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJWU010000001.1 Salmonella enterica strain PNUSAS351086 SAMN35364726-rid18222983.denovo.01, whole genome shotgun sequence	774541..774978	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJWU010000031.1 Salmonella enterica strain PNUSAS351086 SAMN35364726-rid18222983.guided.18, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJWU010000018.1 Salmonella enterica strain PNUSAS351086 SAMN35364726-rid18222983.denovo.20, whole genome shotgun sequence	6776..7418	enterobacteriales	IncFII(S)	100	262 / 262	ABOJWU010000020.1 Salmonella enterica strain PNUSAS351086 SAMN35364726-rid18222983.denovo.22, whole genome shotgun sequence	3382..3643																																																avrA	ABOJWU010000002.1	505461..506330	99.54	870	0						
GCA_033054845.1_PDT001758706.1_genomic.fna	Salmonella_enterica	0.5214	407.022 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJWV010000001.1 Salmonella enterica strain PNUSAS351085 SAMN35364725-rid18220133.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJWV010000024.1 Salmonella enterica strain PNUSAS351085 SAMN35364725-rid18220133.guided.18, whole genome shotgun sequence	10875..11312	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJWV010000016.1 Salmonella enterica strain PNUSAS351085 SAMN35364725-rid18220133.denovo.17, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABOJWV010000017.1 Salmonella enterica strain PNUSAS351085 SAMN35364725-rid18220133.denovo.20, whole genome shotgun sequence	3404..3665																																																avrA	ABOJWV010000002.1	553635..554504	99.54	870	0						
GCA_033054865.1_PDT001758703.1_genomic.fna	Salmonella_enterica	0.5229	247.473 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOJWX010000001.1 Salmonella enterica strain PNUSAS351083 SAMN35364723-rid18221703.denovo.01, whole genome shotgun sequence	403962..404399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJWX010000036.1 Salmonella enterica strain PNUSAS351083 SAMN35364723-rid18221703.guided.25, whole genome shotgun sequence	10251..10688	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJWX010000008.1	39484..40352	99.425	870	0						
GCA_033054885.1_PDT001758704.1_genomic.fna	Salmonella_enterica	0.5215	213.341 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJWW010000002.1 Salmonella enterica strain PNUSAS351073 SAMN35364221-rid18220623.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJWW010000044.1 Salmonella enterica strain PNUSAS351073 SAMN35364221-rid18220623.guided.31, whole genome shotgun sequence	11275..11712	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOJWW010000019.1 Salmonella enterica strain PNUSAS351073 SAMN35364221-rid18220623.denovo.19, whole genome shotgun sequence	6816..7458	enterobacteriales	IncFII(S)	100	262 / 262	ABOJWW010000019.1 Salmonella enterica strain PNUSAS351073 SAMN35364221-rid18220623.denovo.19, whole genome shotgun sequence	22543..22804		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJWW010000023.1 Salmonella enterica strain PNUSAS351073 SAMN35364221-rid18220623.denovo.23, whole genome shotgun sequence	20080..20221																																									avrA	ABOJWW010000008.1	144120..144988	100	869	0						
GCA_033054905.1_PDT001758702.1_genomic.fna	Salmonella_enterica	0.5215	458.337 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOJWZ010000001.1 Salmonella enterica strain PNUSAS351074 SAMN35364222-rid18221693.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOJWZ010000027.1 Salmonella enterica strain PNUSAS351074 SAMN35364222-rid18221693.guided.17, whole genome shotgun sequence	16407..16844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJWZ010000002.1	138354..139223	98.966	870	0						
GCA_033054925.1_PDT001758701.1_genomic.fna	Salmonella_enterica	0.5203	368.134 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJWY010000001.1 Salmonella enterica strain 23MO05GT01-S1 SAMN35364225-rid18220613.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJWY010000034.1 Salmonella enterica strain 23MO05GT01-S1 SAMN35364225-rid18220613.guided.26, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOJWY010000005.1 Salmonella enterica strain 23MO05GT01-S1 SAMN35364225-rid18220613.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOJWY010000036.1 Salmonella enterica strain 23MO05GT01-S1 SAMN35364225-rid18220613.guided.28, whole genome shotgun sequence	6430..6852	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJWY010000002.1	203292..204161	99.195	870	0						
GCA_033054945.1_PDT001758699.1_genomic.fna	Salmonella_enterica	0.5225	405.269 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJXA010000001.1 Salmonella enterica strain PNUSAS351068 SAMN35364216-rid18220603.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJXA010000033.1 Salmonella enterica strain PNUSAS351068 SAMN35364216-rid18220603.guided.22, whole genome shotgun sequence	20569..21006	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJXA010000004.1	28861..29730	99.655	870	0						
GCA_033054965.1_PDT001758700.1_genomic.fna	Salmonella_enterica	0.5201	386.014 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pEH01)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJXB010000001.1 Salmonella enterica strain PNUSAS351071 SAMN35364219-rid18222963.denovo.01, whole genome shotgun sequence	643174..643611	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJXB010000027.1 Salmonella enterica strain PNUSAS351071 SAMN35364219-rid18222963.guided.20, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pEH01)	97.93	726 / 726	ABOJXB010000017.1 Salmonella enterica strain PNUSAS351071 SAMN35364219-rid18222963.denovo.18, whole genome shotgun sequence	6758..7483																																																																	
GCA_033054985.1_PDT001758698.1_genomic.fna	Salmonella_enterica	0.5221	257.839 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJXC010000002.1 Salmonella enterica strain PNUSAS351065 SAMN35364213-rid18221683.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJXC010000042.1 Salmonella enterica strain PNUSAS351065 SAMN35364213-rid18221683.guided.31, whole genome shotgun sequence	10514..10951	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOJXC010000031.1 Salmonella enterica strain PNUSAS351065 SAMN35364213-rid18221683.denovo.32, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABOJXC010000030.1 Salmonella enterica strain PNUSAS351065 SAMN35364213-rid18221683.denovo.30, whole genome shotgun sequence	29372..29633																																																avrA	ABOJXC010000001.1	401580..402448	100	869	0						
GCA_033056975.1_PDT001758596.1_genomic.fna	Salmonella_enterica	0.5211	504.555 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJXE010000001.1 Salmonella enterica strain PNUSAS351213 SAMN35363995-rid18219793.denovo.01, whole genome shotgun sequence	477373..477810	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJXE010000029.1 Salmonella enterica strain PNUSAS351213 SAMN35363995-rid18219793.guided.17, whole genome shotgun sequence	24943..25380	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJXE010000002.1	551516..552385	99.195	870	0						
GCA_033057295.1_PDT001758570.1_genomic.fna	Salmonella_enterica	0.522	93.398 KB	17	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOJXW010000001.1 Salmonella enterica subsp. enterica serovar Litchfield strain FSIS12322202 SAMN35363323-rid18219873.denovo.001, whole genome shotgun sequence	37869..38306	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOJXW010000100.1 Salmonella enterica subsp. enterica serovar Litchfield strain FSIS12322202 SAMN35363323-rid18219873.guided.049, whole genome shotgun sequence	13871..14308	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOJXW010000018.1 Salmonella enterica subsp. enterica serovar Litchfield strain FSIS12322202 SAMN35363323-rid18219873.denovo.018, whole genome shotgun sequence	76550..76691																																																						avrA	ABOJXW010000016.1	98447..99316	99.77	870	0						
GCA_033058155.1_PDT001758569.1_genomic.fna	Salmonella_enterica	0.5201	90.325 KB	18	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJXX010000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322201 SAMN35363316-rid18219713.denovo.008, whole genome shotgun sequence	86587..87024	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJXX010000076.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322201 SAMN35363316-rid18219713.denovo.079, whole genome shotgun sequence	6684..7520	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOJXX010000076.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322201 SAMN35363316-rid18219713.denovo.079, whole genome shotgun sequence	7520..8323	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOJXX010000132.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322201 SAMN35363316-rid18219713.guided.074, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJXX010000134.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322201 SAMN35363316-rid18219713.guided.092, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOJXX010000134.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322201 SAMN35363316-rid18219713.guided.092, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOJXX010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322201 SAMN35363316-rid18219713.denovo.101, whole genome shotgun sequence	2307..3512	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOJXX010000135.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322201 SAMN35363316-rid18219713.guided.098, whole genome shotgun sequence	2330..3535	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOJXX010000095.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322201 SAMN35363316-rid18219713.denovo.100, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABOJXX010000076.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322201 SAMN35363316-rid18219713.denovo.079, whole genome shotgun sequence	5800..6061		enterobacteriales	IncFII	96.95	262 / 261	ABOJXX010000134.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322201 SAMN35363316-rid18219713.guided.092, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOJXX010000074.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322201 SAMN35363316-rid18219713.denovo.077, whole genome shotgun sequence	6576..6717		enterobacteriales	IncX1	100	373 / 373	ABOJXX010000100.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322201 SAMN35363316-rid18219713.denovo.105, whole genome shotgun sequence	2732..3104																											avrA	ABOJXX010000038.1	39484..40353	99.655	870	0						
GCA_033058175.1_PDT001758568.1_genomic.fna	Salmonella_enterica	0.5208	80.522 KB	20	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	-:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	-	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJXY010000025.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322198 SAMN35363313-rid18219863.denovo.025, whole genome shotgun sequence	14350..14787	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJXY010000123.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322198 SAMN35363313-rid18219863.guided.049, whole genome shotgun sequence	14381..14818	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOJXY010000042.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322198 SAMN35363313-rid18219863.denovo.042, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOJXY010000125.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS12322198 SAMN35363313-rid18219863.guided.080, whole genome shotgun sequence	10712..11134	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJXY010000002.1	95917..96786	99.195	870	0						
GCA_033058195.1_PDT001758567.1_genomic.fna	Salmonella_enterica	0.5212	93.217 KB	14	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJXZ010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322199 SAMN35363314-rid18219853.denovo.01, whole genome shotgun sequence	232704..233141	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJXZ010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322199 SAMN35363314-rid18219853.guided.50, whole genome shotgun sequence	16064..16501	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOJXZ010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322199 SAMN35363314-rid18219853.denovo.66, whole genome shotgun sequence	8981..9540																																																						avrA	ABOJXZ010000006.1	124359..125228	99.655	870	0						
GCA_033058215.1_PDT001758563.1_genomic.fna	Salmonella_enterica	0.5221	96.578 KB	16	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJYD010000019.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322196 SAMN35363276-rid18219833.denovo.019, whole genome shotgun sequence	16044..16481	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJYD010000110.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322196 SAMN35363276-rid18219833.guided.066, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJYD010000077.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322196 SAMN35363276-rid18219833.denovo.079, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABOJYD010000080.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322196 SAMN35363276-rid18219833.denovo.082, whole genome shotgun sequence	3405..3666																																																avrA	ABOJYD010000014.1	98962..99831	99.54	870	0						
GCA_033058235.1_PDT001758566.1_genomic.fna	Salmonella_enterica	0.5217	141.85 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJYA010000008.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322200 SAMN35363315-rid18219703.denovo.08, whole genome shotgun sequence	17185..17622	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJYA010000075.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322200 SAMN35363315-rid18219703.guided.41, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJYA010000053.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322200 SAMN35363315-rid18219703.denovo.56, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABOJYA010000057.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322200 SAMN35363315-rid18219703.denovo.60, whole genome shotgun sequence	3414..3675																																																avrA	ABOJYA010000007.1	174836..175705	99.54	870	0						
GCA_033058245.1_PDT001758565.1_genomic.fna	Salmonella_enterica	0.5217	159.573 KB	11	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJYB010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJYB010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.denovo.38, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJYB010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.denovo.38, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOJYB010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.denovo.63, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOJYB010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.denovo.63, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOJYB010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.guided.30, whole genome shotgun sequence	32657..33094	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOJYB010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.guided.55, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOJYB010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.guided.55, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOJYB010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.guided.62, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOJYB010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.guided.62, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOJYB010000053.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.denovo.59, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOJYB010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.guided.58, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOJYB010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.denovo.38, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABOJYB010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.guided.55, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOJYB010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.denovo.38, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJYB010000085.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.guided.56, whole genome shotgun sequence	1677..2876	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOJYB010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12322193 SAMN35363273-rid18219843.denovo.43, whole genome shotgun sequence	9109..9668																																																						avrA	ABOJYB010000007.1	149831..150700	99.655	870	0						
GCA_033058275.1_PDT001758564.1_genomic.fna	Salmonella_enterica	0.5223	134.89 KB	13	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	-:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col156	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	-	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:b:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJYC010000022.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS12322197 SAMN35363277-rid18219693.denovo.22, whole genome shotgun sequence	52314..52751	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJYC010000090.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS12322197 SAMN35363277-rid18219693.guided.67, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOJYC010000072.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS12322197 SAMN35363277-rid18219693.denovo.75, whole genome shotgun sequence	2208..2338	enterobacteriales	Col156	94.81	154 / 154	ABOJYC010000069.1 Salmonella enterica subsp. enterica serovar Ohio strain FSIS12322197 SAMN35363277-rid18219693.denovo.72, whole genome shotgun sequence	792..945																																																											
GCA_033058295.1_PDT001758562.1_genomic.fna	Salmonella_enterica	0.5198	84.858 KB	20	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJYE010000012.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322195 SAMN35363275-rid18219823.denovo.012, whole genome shotgun sequence	75483..75920	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJYE010000138.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322195 SAMN35363275-rid18219823.guided.049, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOJYE010000097.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322195 SAMN35363275-rid18219823.denovo.100, whole genome shotgun sequence	763..893	enterobacteriales	IncHI2A	99.52	630 / 630	ABOJYE010000083.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322195 SAMN35363275-rid18219823.denovo.086, whole genome shotgun sequence	5615..6244		enterobacteriales	IncX1	100	373 / 373	ABOJYE010000072.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12322195 SAMN35363275-rid18219823.denovo.074, whole genome shotgun sequence	5658..6030																																									avrA	ABOJYE010000035.1	39612..40481	99.655	870	0						
GCA_033058495.1_PDT001758561.1_genomic.fna	Salmonella_enterica	0.5225	85.278 KB	19	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJYF010000001.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322194 SAMN35363274-rid18219683.denovo.01, whole genome shotgun sequence	231851..232288	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJYF010000080.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322194 SAMN35363274-rid18219683.denovo.83, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOJYF010000080.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322194 SAMN35363274-rid18219683.denovo.83, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJYF010000080.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322194 SAMN35363274-rid18219683.denovo.83, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJYF010000080.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322194 SAMN35363274-rid18219683.denovo.83, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJYF010000080.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322194 SAMN35363274-rid18219683.denovo.83, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABOJYF010000097.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322194 SAMN35363274-rid18219683.guided.82, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOJYF010000097.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322194 SAMN35363274-rid18219683.guided.82, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJYF010000097.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322194 SAMN35363274-rid18219683.guided.82, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJYF010000097.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322194 SAMN35363274-rid18219683.guided.82, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJYF010000097.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322194 SAMN35363274-rid18219683.guided.82, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOJYF010000099.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322194 SAMN35363274-rid18219683.guided.87, whole genome shotgun sequence	2481..2918	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABOJYF010000081.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322194 SAMN35363274-rid18219683.denovo.85, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJYF010000098.1 Salmonella enterica subsp. enterica serovar Hadar strain FSIS12322194 SAMN35363274-rid18219683.guided.84, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJYF010000042.1	39546..40415	99.655	870	0						
GCA_033058535.1_PDT001758560.1_genomic.fna	Salmonella_enterica	0.5214	136.532 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJYG010000021.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322191 SAMN35363271-rid18219813.denovo.21, whole genome shotgun sequence	25615..26052	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJYG010000076.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322191 SAMN35363271-rid18219813.guided.38, whole genome shotgun sequence	10637..11074	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJYG010000054.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322191 SAMN35363271-rid18219813.denovo.57, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOJYG010000055.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12322191 SAMN35363271-rid18219813.denovo.58, whole genome shotgun sequence	3402..3663																																																avrA	ABOJYG010000003.1	174863..175732	99.54	870	0						
GCA_033058755.1_PDT001758426.1_genomic.fna	Salmonella_enterica	0.5203	266.034 KB	6	aroC_197,dnaN_187,hemD_10,hisD_234,purE_8,sucA_65,thrA_22	1541	8:z4,z23:-	3	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),ColpVC	aroC	100	100	aroC_197	dnaN	100	100	dnaN_187	hemD	100	100	hemD_10	hisD	100	100	hisD_234	purE	100	100	purE_8	sucA	100	100	sucA_65	thrA	100	100	thrA_22	8	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Corvallis		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOJYR010000001.1 Salmonella enterica strain PNUSAS351181 SAMN35361947-rid18219423.denovo.01, whole genome shotgun sequence	173108..173545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJYR010000036.1 Salmonella enterica strain PNUSAS351181 SAMN35361947-rid18219423.guided.27, whole genome shotgun sequence	2330..2767	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOJYR010000037.1 Salmonella enterica strain PNUSAS351181 SAMN35361947-rid18219423.guided.28, whole genome shotgun sequence	2330..2767	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOJYR010000030.1 Salmonella enterica strain PNUSAS351181 SAMN35361947-rid18219423.denovo.35, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOJYR010000041.1 Salmonella enterica strain PNUSAS351181 SAMN35361947-rid18219423.guided.38, whole genome shotgun sequence	687..1331	Ciprofloxacin	EU432277	tet(A)	99.83	1200/1200	ABOJYR010000027.1 Salmonella enterica strain PNUSAS351181 SAMN35361947-rid18219423.denovo.30, whole genome shotgun sequence	3910..5109	Doxycycline, Tetracycline	AJ517790	tet(A)	99.83	1200/1200	ABOJYR010000040.1 Salmonella enterica strain PNUSAS351181 SAMN35361947-rid18219423.guided.33, whole genome shotgun sequence	1599..2798	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																							parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJYR010000030.1 Salmonella enterica strain PNUSAS351181 SAMN35361947-rid18219423.denovo.35, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOJYR010000041.1 Salmonella enterica strain PNUSAS351181 SAMN35361947-rid18219423.guided.38, whole genome shotgun sequence	31..161		enterobacteriales	ColpVC	98.96	193 / 193	ABOJYR010000032.1 Salmonella enterica strain PNUSAS351181 SAMN35361947-rid18219423.denovo.37, whole genome shotgun sequence	1159..1351																																									avrA	ABOJYR010000012.1	39424..40293	99.425	870	0						
GCA_033058775.1_PDT001758425.1_genomic.fna	Salmonella_enterica	0.5192	406.114 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJYS010000001.1 Salmonella enterica strain PNUSAS351150 SAMN35361971-rid18219413.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJYS010000038.1 Salmonella enterica strain PNUSAS351150 SAMN35361971-rid18219413.guided.24, whole genome shotgun sequence	8625..9062	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJYS010000020.1 Salmonella enterica strain PNUSAS351150 SAMN35361971-rid18219413.denovo.22, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABOJYS010000024.1 Salmonella enterica strain PNUSAS351150 SAMN35361971-rid18219413.denovo.27, whole genome shotgun sequence	2397..2658																																																avrA	ABOJYS010000007.1	140720..141589	99.54	870	0						
GCA_033058795.1_PDT001758424.1_genomic.fna	Salmonella_enterica	0.5225	367.997 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJYT010000001.1 Salmonella enterica strain PNUSAS351154 SAMN35361978-rid18219403.denovo.01, whole genome shotgun sequence	460175..460612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJYT010000037.1 Salmonella enterica strain PNUSAS351154 SAMN35361978-rid18219403.guided.26, whole genome shotgun sequence	10241..10678	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJYT010000002.1	149889..150758	99.655	870	0						
GCA_033058815.1_PDT001758423.1_genomic.fna	Salmonella_enterica	0.5112	367.737 KB	6	aroC_88,dnaN_26,hemD_30,hisD_84,purE_21,sucA_92,thrA_80	1845	61:c:z35	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_84	purE	100	100	purE_21	sucA	100	100	sucA_92	thrA	100	100	thrA_80	61	c	z35	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:c:z35		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOJYU010000011.1 Salmonella enterica strain PNUSAS351163 SAMN35361970-rid18219613.denovo.11, whole genome shotgun sequence	111586..112023	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOJYU010000046.1 Salmonella enterica strain PNUSAS351163 SAMN35361970-rid18219613.guided.24, whole genome shotgun sequence	9768..10205	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJYU010000001.1	154557..155426	96.552	870	0						
GCA_033058875.1_PDT001758420.1_genomic.fna	Salmonella_enterica	0.5204	405.883 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJYX010000001.1 Salmonella enterica strain PNUSAS351156 SAMN35361972-rid18219383.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJYX010000030.1 Salmonella enterica strain PNUSAS351156 SAMN35361972-rid18219383.guided.22, whole genome shotgun sequence	20511..20948	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncX1	98.93	374 / 374	ABOJYX010000018.1 Salmonella enterica strain PNUSAS351156 SAMN35361972-rid18219383.denovo.19, whole genome shotgun sequence	32011..32384																																																						avrA	ABOJYX010000013.1	39473..40342	99.54	870	0						
GCA_033058895.1_PDT001758421.1_genomic.fna	Salmonella_enterica	0.5197	411.872 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJYW010000002.1 Salmonella enterica strain PNUSAS351161 SAMN35361975-rid18219393.denovo.02, whole genome shotgun sequence	387955..388392	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJYW010000034.1 Salmonella enterica strain PNUSAS351161 SAMN35361975-rid18219393.guided.19, whole genome shotgun sequence	7465..7902	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJYW010000018.1 Salmonella enterica strain PNUSAS351161 SAMN35361975-rid18219393.denovo.20, whole genome shotgun sequence	10557..10698																																																						avrA	ABOJYW010000003.1	407475..408344	99.425	870	0						
GCA_033058915.1_PDT001758422.1_genomic.fna	Salmonella_enterica	0.5207	192.247 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJYV010000001.1 Salmonella enterica strain PNUSAS351149 SAMN35361980-rid18219603.denovo.01, whole genome shotgun sequence	145377..145814	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJYV010000071.1 Salmonella enterica strain PNUSAS351149 SAMN35361980-rid18219603.guided.33, whole genome shotgun sequence	15209..15646	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJYV010000003.1	208058..208926	99.77	870	0						
GCA_033058935.1_PDT001758418.1_genomic.fna	Salmonella_enterica	0.5216	326.3 KB	4	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	3,10:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	3,10	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Anatum		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOJYY010000001.1 Salmonella enterica strain PNUSAS351155 SAMN35361968-rid18219593.denovo.01, whole genome shotgun sequence	806466..806903	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJYY010000023.1 Salmonella enterica strain PNUSAS351155 SAMN35361968-rid18219593.guided.19, whole genome shotgun sequence	11999..12436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJYY010000005.1	149711..150581	99.426	871	0						
GCA_033058955.1_PDT001758419.1_genomic.fna	Salmonella_enterica	0.5206	236.501 KB	5	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJYZ010000001.1 Salmonella enterica strain PNUSAS351162 SAMN35361969-rid18219373.denovo.01, whole genome shotgun sequence	462173..462610	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJYZ010000050.1 Salmonella enterica strain PNUSAS351162 SAMN35361969-rid18219373.guided.28, whole genome shotgun sequence	9478..9915	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJYZ010000002.1	551169..552038	99.195	870	0						
GCA_033058975.1_PDT001758417.1_genomic.fna	Salmonella_enterica	0.5217	224.917 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJZA010000001.1 Salmonella enterica strain PNUSAS351152 SAMN35361974-rid18219583.denovo.01, whole genome shotgun sequence	37883..38320	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJZA010000074.1 Salmonella enterica strain PNUSAS351152 SAMN35361974-rid18219583.guided.40, whole genome shotgun sequence	3783..4220	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOJZA010000039.1 Salmonella enterica strain PNUSAS351152 SAMN35361974-rid18219583.denovo.42, whole genome shotgun sequence	2978..3620	enterobacteriales	IncFII(S)	100	221 / 262	ABOJZA010000052.1 Salmonella enterica strain PNUSAS351152 SAMN35361974-rid18219583.denovo.55, whole genome shotgun sequence	4140..4360																																																avrA	ABOJZA010000008.1	94139..95007	100	869	0						
GCA_033058995.1_PDT001758415.1_genomic.fna	Salmonella_enterica	0.5209	412.38 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJZC010000004.1 Salmonella enterica strain PNUSAS351189 isolate 23-000765-BAC-01 SAMN35361952-rid18219353.denovo.04, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJZC010000029.1 Salmonella enterica strain PNUSAS351189 isolate 23-000765-BAC-01 SAMN35361952-rid18219353.guided.18, whole genome shotgun sequence	21776..22213	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJZC010000016.1 Salmonella enterica strain PNUSAS351189 isolate 23-000765-BAC-01 SAMN35361952-rid18219353.denovo.17, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOJZC010000020.1 Salmonella enterica strain PNUSAS351189 isolate 23-000765-BAC-01 SAMN35361952-rid18219353.denovo.23, whole genome shotgun sequence	3397..3658																																																avrA	ABOJZC010000001.1	584704..585573	99.54	870	0						
GCA_033059015.1_PDT001758416.1_genomic.fna	Salmonella_enterica	0.5219	222.768 KB	8	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	2	ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOJZB010000002.1 Salmonella enterica strain PNUSAS351159 SAMN35361977-rid18219363.denovo.02, whole genome shotgun sequence	252640..253077	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJZB010000038.1 Salmonella enterica strain PNUSAS351159 SAMN35361977-rid18219363.denovo.42, whole genome shotgun sequence	2457..3293	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOJZB010000038.1 Salmonella enterica strain PNUSAS351159 SAMN35361977-rid18219363.denovo.42, whole genome shotgun sequence	3293..4095	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJZB010000038.1 Salmonella enterica strain PNUSAS351159 SAMN35361977-rid18219363.denovo.42, whole genome shotgun sequence	3293..4096	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJZB010000038.1 Salmonella enterica strain PNUSAS351159 SAMN35361977-rid18219363.denovo.42, whole genome shotgun sequence	3293..4096	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJZB010000038.1 Salmonella enterica strain PNUSAS351159 SAMN35361977-rid18219363.denovo.42, whole genome shotgun sequence	3293..4096	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOJZB010000078.1 Salmonella enterica strain PNUSAS351159 SAMN35361977-rid18219363.guided.26, whole genome shotgun sequence	39052..39489	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOJZB010000080.1 Salmonella enterica strain PNUSAS351159 SAMN35361977-rid18219363.guided.41, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOJZB010000080.1 Salmonella enterica strain PNUSAS351159 SAMN35361977-rid18219363.guided.41, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOJZB010000080.1 Salmonella enterica strain PNUSAS351159 SAMN35361977-rid18219363.guided.41, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOJZB010000080.1 Salmonella enterica strain PNUSAS351159 SAMN35361977-rid18219363.guided.41, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOJZB010000080.1 Salmonella enterica strain PNUSAS351159 SAMN35361977-rid18219363.guided.41, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOJZB010000040.1 Salmonella enterica strain PNUSAS351159 SAMN35361977-rid18219363.denovo.45, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOJZB010000081.1 Salmonella enterica strain PNUSAS351159 SAMN35361977-rid18219363.guided.44, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABOJZB010000053.1 Salmonella enterica strain PNUSAS351159 SAMN35361977-rid18219363.denovo.58, whole genome shotgun sequence	805..997	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJZB010000031.1 Salmonella enterica strain PNUSAS351159 SAMN35361977-rid18219363.denovo.34, whole genome shotgun sequence	986..1127																																																avrA	ABOJZB010000008.1	39349..40218	99.655	870	0						
GCA_033059035.1_PDT001758414.1_genomic.fna	Salmonella_enterica	0.521	199.229 KB	8	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJZD010000003.1 Salmonella enterica strain PNUSAS351153 SAMN35361981-rid18219343.denovo.03, whole genome shotgun sequence	148899..149336	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJZD010000073.1 Salmonella enterica strain PNUSAS351153 SAMN35361981-rid18219343.guided.35, whole genome shotgun sequence	4..441	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJZD010000002.1	95060..95929	99.195	870	0						
GCA_033059055.1_PDT001758413.1_genomic.fna	Salmonella_enterica	0.5216	391.615 KB	6	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJZE010000003.1 Salmonella enterica strain PNUSAS351158 SAMN35361979-rid18219573.denovo.03, whole genome shotgun sequence	51640..52077	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJZE010000031.1 Salmonella enterica strain PNUSAS351158 SAMN35361979-rid18219573.guided.25, whole genome shotgun sequence	3321..3758	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033059075.1_PDT001758412.1_genomic.fna	Salmonella_enterica	0.5215	208.854 KB	7	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	3	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(6')-Iaa,aac(3)-VIa,aadA1	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJZG010000001.1 Salmonella enterica strain PNUSAS351151 SAMN35361976-rid18219563.denovo.01, whole genome shotgun sequence	462162..462599	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOJZG010000019.1 Salmonella enterica strain PNUSAS351151 SAMN35361976-rid18219563.denovo.19, whole genome shotgun sequence	84883..85785	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	99.87	792/792	ABOJZG010000019.1 Salmonella enterica strain PNUSAS351151 SAMN35361976-rid18219563.denovo.19, whole genome shotgun sequence	83928..84719	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	98.63	438/438	ABOJZG010000046.1 Salmonella enterica strain PNUSAS351151 SAMN35361976-rid18219563.guided.28, whole genome shotgun sequence	2337..2774	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOJZG010000048.1 Salmonella enterica strain PNUSAS351151 SAMN35361976-rid18219563.guided.32, whole genome shotgun sequence	6823..7725	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	99.87	792/792	ABOJZG010000048.1 Salmonella enterica strain PNUSAS351151 SAMN35361976-rid18219563.guided.32, whole genome shotgun sequence	5868..6659	Spectinomycin, Streptomycin	JQ414041																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJZG010000019.1 Salmonella enterica strain PNUSAS351151 SAMN35361976-rid18219563.denovo.19, whole genome shotgun sequence	92308..92449	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJZG010000048.1 Salmonella enterica strain PNUSAS351151 SAMN35361976-rid18219563.guided.32, whole genome shotgun sequence	14248..14389																																																avrA	ABOJZG010000002.1	153057..153926	99.195	870	0						
GCA_033059095.1_PDT001758410.1_genomic.fna	Salmonella_enterica	0.5196	325.137 KB	6	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJZI010000002.1 Salmonella enterica strain PNUSAS351157 SAMN35361973-rid18219323.denovo.02, whole genome shotgun sequence	384538..384975	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJZI010000050.1 Salmonella enterica strain PNUSAS351157 SAMN35361973-rid18219323.guided.20, whole genome shotgun sequence	19812..20249	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJZI010000027.1 Salmonella enterica strain PNUSAS351157 SAMN35361973-rid18219323.denovo.30, whole genome shotgun sequence	5748..5889																																																						avrA	ABOJZI010000003.1	407475..408344	99.425	870	0						
GCA_033059115.1_PDT001758411.1_genomic.fna	Salmonella_enterica	0.5223	225.553 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJZH010000002.1 Salmonella enterica strain PNUSAS351160 SAMN35361967-rid18219333.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJZH010000064.1 Salmonella enterica strain PNUSAS351160 SAMN35361967-rid18219333.guided.35, whole genome shotgun sequence	13052..13489	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOJZH010000038.1 Salmonella enterica strain PNUSAS351160 SAMN35361967-rid18219333.denovo.41, whole genome shotgun sequence	6826..7468	enterobacteriales	IncFII(S)	100	262 / 262	ABOJZH010000034.1 Salmonella enterica strain PNUSAS351160 SAMN35361967-rid18219333.denovo.37, whole genome shotgun sequence	9245..9506																																																avrA	ABOJZH010000001.1	446742..447610	100	869	0						
GCA_033059155.1_PDT001758408.1_genomic.fna	Salmonella_enterica	0.5209	196.232 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		1	IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJZJ010000002.1 Salmonella enterica strain PNUSAS351192 SAMN35361954-rid18219543.denovo.02, whole genome shotgun sequence	162384..162821	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOJZJ010000023.1 Salmonella enterica strain PNUSAS351192 SAMN35361954-rid18219543.denovo.23, whole genome shotgun sequence	71694..72473	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABOJZJ010000061.1 Salmonella enterica strain PNUSAS351192 SAMN35361954-rid18219543.guided.39, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOJZJ010000066.1 Salmonella enterica strain PNUSAS351192 SAMN35361954-rid18219543.guided.61, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOJZJ010000042.1 Salmonella enterica strain PNUSAS351192 SAMN35361954-rid18219543.denovo.45, whole genome shotgun sequence	103..969	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOJZJ010000065.1 Salmonella enterica strain PNUSAS351192 SAMN35361954-rid18219543.guided.58, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABOJZJ010000042.1 Salmonella enterica strain PNUSAS351192 SAMN35361954-rid18219543.denovo.45, whole genome shotgun sequence	6603..7817	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABOJZJ010000063.1 Salmonella enterica strain PNUSAS351192 SAMN35361954-rid18219543.guided.46, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOJZJ010000064.1 Salmonella enterica strain PNUSAS351192 SAMN35361954-rid18219543.guided.51, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABOJZJ010000042.1 Salmonella enterica strain PNUSAS351192 SAMN35361954-rid18219543.denovo.45, whole genome shotgun sequence	4491..5666	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABOJZJ010000063.1 Salmonella enterica strain PNUSAS351192 SAMN35361954-rid18219543.guided.46, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	IncFII(S)	100	262 / 262	ABOJZJ010000041.1 Salmonella enterica strain PNUSAS351192 SAMN35361954-rid18219543.denovo.43, whole genome shotgun sequence	9330..9591																																																						avrA	ABOJZJ010000001.1	506651..507520	99.885	870	0						
GCA_033059165.1_PDT001758407.1_genomic.fna	Salmonella_enterica	0.522	386.877 KB	5	aroC_6,dnaN_7,hemD_10,hisD_10,purE_8,sucA_10,thrA_14	16	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_6	dnaN	100	100	dnaN_7	hemD	100	100	hemD_10	hisD	100	100	hisD_10	purE	100	100	purE_8	sucA	100	100	sucA_10	thrA	100	100	thrA_14	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOJZK010000001.1 Salmonella enterica strain PNUSAS351191 SAMN35361953-rid18219533.denovo.01, whole genome shotgun sequence	149959..150396	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOJZK010000027.1 Salmonella enterica strain PNUSAS351191 SAMN35361953-rid18219533.guided.19, whole genome shotgun sequence	13013..13450	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOJZK010000008.1	149619..150488	99.195	870	0						
GCA_033059195.1_PDT001758406.1_genomic.fna	Salmonella_enterica	0.5211	455.493 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJZL010000005.1 Salmonella enterica strain PNUSAS351190 isolate 23-000766-BAC-01 SAMN35361951-rid18219313.denovo.05, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJZL010000029.1 Salmonella enterica strain PNUSAS351190 isolate 23-000766-BAC-01 SAMN35361951-rid18219313.guided.18, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJZL010000022.1 Salmonella enterica strain PNUSAS351190 isolate 23-000766-BAC-01 SAMN35361951-rid18219313.denovo.24, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOJZL010000024.1 Salmonella enterica strain PNUSAS351190 isolate 23-000766-BAC-01 SAMN35361951-rid18219313.denovo.26, whole genome shotgun sequence	3423..3684																																																avrA	ABOJZL010000001.1	585485..586354	99.54	870	0						
GCA_033059235.1_PDT001758404.1_genomic.fna	Salmonella_enterica	0.5212	304.38 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJZN010000001.1 Salmonella enterica strain PNUSAS351179 SAMN35361948-rid18219293.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABOJZN010000026.1 Salmonella enterica strain PNUSAS351179 SAMN35361948-rid18219293.guided.21, whole genome shotgun sequence	8799..9236	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJZN010000027.1 Salmonella enterica strain PNUSAS351179 SAMN35361948-rid18219293.guided.22, whole genome shotgun sequence	8799..9236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJZN010000019.1 Salmonella enterica strain PNUSAS351179 SAMN35361948-rid18219293.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOJZN010000020.1 Salmonella enterica strain PNUSAS351179 SAMN35361948-rid18219293.denovo.23, whole genome shotgun sequence	3390..3651																																																avrA	ABOJZN010000002.1	553636..554505	99.54	870	0						
GCA_033059255.1_PDT001758403.1_genomic.fna	Salmonella_enterica	0.5203	152.128 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOJZO010000008.1 Salmonella enterica strain PNUSAS351169 SAMN35361938-rid18219523.denovo.08, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOJZO010000063.1 Salmonella enterica strain PNUSAS351169 SAMN35361938-rid18219523.guided.56, whole genome shotgun sequence	307..741	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																																						
GCA_033059275.1_PDT001758402.1_genomic.fna	Salmonella_enterica	0.5217	257.839 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJZP010000001.1 Salmonella enterica strain PNUSAS351176 SAMN35361935-rid18219513.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJZP010000047.1 Salmonella enterica strain PNUSAS351176 SAMN35361935-rid18219513.guided.38, whole genome shotgun sequence	1528..1965	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOJZP010000025.1 Salmonella enterica strain PNUSAS351176 SAMN35361935-rid18219513.denovo.25, whole genome shotgun sequence	44717..45359	enterobacteriales	IncFII(S)	100	262 / 262	ABOJZP010000025.1 Salmonella enterica strain PNUSAS351176 SAMN35361935-rid18219513.denovo.25, whole genome shotgun sequence	29372..29633																																																avrA	ABOJZP010000002.1	174651..175519	100	869	0						
GCA_033059315.1_PDT001758400.1_genomic.fna	Salmonella_enterica	0.5224	397.497 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOJZR010000001.1 Salmonella enterica strain PNUSAS351173 SAMN35361929-rid18219273.denovo.01, whole genome shotgun sequence	397569..398006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOJZR010000027.1 Salmonella enterica strain PNUSAS351173 SAMN35361929-rid18219273.guided.23, whole genome shotgun sequence	2242..2679	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJZR010000002.1	183141..184010	98.966	870	0						
GCA_033059335.1_PDT001758399.1_genomic.fna	Salmonella_enterica	0.5214	238.871 KB	5	aroC_84,dnaN_342,hemD_256,hisD_435,purE_378,sucA_182,thrA_362	1456	18:b:1,5	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_342	hemD	100	100	hemD_256	hisD	100	100	hisD_435	purE	100	100	purE_378	sucA	100	100	sucA_182	thrA	100	100	thrA_362	18	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Fluntern		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJZS010000001.1 Salmonella enterica strain PNUSAS351171 SAMN35361932-rid18219263.denovo.01, whole genome shotgun sequence	457040..457477	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOJZS010000046.1 Salmonella enterica strain PNUSAS351171 SAMN35361932-rid18219263.guided.31, whole genome shotgun sequence	5172..5609	Amikacin, Tobramycin	NC_003197	fosA7	99.76	423/423	ABOJZS010000002.1 Salmonella enterica strain PNUSAS351171 SAMN35361932-rid18219263.denovo.02, whole genome shotgun sequence	266531..266953	Fosfomycin	LAPJ01000014	fosA7	99.76	423/423	ABOJZS010000044.1 Salmonella enterica strain PNUSAS351171 SAMN35361932-rid18219263.guided.26, whole genome shotgun sequence	15750..16172	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJZS010000003.1	414386..415255	98.621	870	0						
GCA_033059455.1_PDT001758396.1_genomic.fna	Salmonella_enterica	0.522	231.954 KB	7	aroC_654,dnaN_41,hemD_109,hisD_279,purE_2,sucA_100,thrA_126	3301	13:d:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_654	dnaN	100	100	dnaN_41	hemD	100	100	hemD_109	hisD	100	100	hisD_279	purE	100	100	purE_2	sucA	100	100	sucA_100	thrA	100	100	thrA_126	13	d	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Telelkebir		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOJZV010000001.1 Salmonella enterica strain PNUSAS351174 SAMN35361937-rid18219483.denovo.01, whole genome shotgun sequence	80872..81309	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOJZV010000048.1 Salmonella enterica strain PNUSAS351174 SAMN35361937-rid18219483.guided.37, whole genome shotgun sequence	2342..2779	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOJZV010000007.1	140428..141297	99.08	870	0						
GCA_033059475.1_PDT001758397.1_genomic.fna	Salmonella_enterica	0.5206	133.097 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJZU010000001.1 Salmonella enterica strain PNUSAS351178 SAMN35361930-rid18219493.denovo.01, whole genome shotgun sequence	91920..92357	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJZU010000059.1 Salmonella enterica strain PNUSAS351178 SAMN35361930-rid18219493.guided.45, whole genome shotgun sequence	5286..5723	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJZU010000040.1 Salmonella enterica strain PNUSAS351178 SAMN35361930-rid18219493.denovo.40, whole genome shotgun sequence	6810..7452	enterobacteriales	IncFII(S)	100	262 / 262	ABOJZU010000043.1 Salmonella enterica strain PNUSAS351178 SAMN35361930-rid18219493.denovo.46, whole genome shotgun sequence	3392..3653																																																avrA	ABOJZU010000003.1	39465..40334	99.54	870	0						
GCA_033059495.1_PDT001758398.1_genomic.fna	Salmonella_enterica	0.521	389.813 KB	5	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOJZT010000004.1 Salmonella enterica strain PNUSAS351170 SAMN35361933-rid18219503.denovo.04, whole genome shotgun sequence	110416..110853	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.31	413/438	ABOJZT010000037.1 Salmonella enterica strain PNUSAS351170 SAMN35361933-rid18219503.guided.29, whole genome shotgun sequence	1..413	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOJZT010000029.1 Salmonella enterica strain PNUSAS351170 SAMN35361933-rid18219503.denovo.31, whole genome shotgun sequence	1708..1838	enterobacteriales	Col440I	90.27	113 / 114	ABOJZT010000028.1 Salmonella enterica strain PNUSAS351170 SAMN35361933-rid18219503.denovo.30, whole genome shotgun sequence	3345..3457																																																avrA	ABOJZT010000001.1	196336..197205	98.966	870	0						
GCA_033059515.1_PDT001758395.1_genomic.fna	Salmonella_enterica	0.5213	400.834 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOJZW010000001.1 Salmonella enterica strain PNUSAS351172 SAMN35361931-rid18219253.denovo.01, whole genome shotgun sequence	40911..41348	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOJZW010000030.1 Salmonella enterica strain PNUSAS351172 SAMN35361931-rid18219253.guided.22, whole genome shotgun sequence	9709..10146	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOJZW010000022.1 Salmonella enterica strain PNUSAS351172 SAMN35361931-rid18219253.denovo.23, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOJZW010000023.1 Salmonella enterica strain PNUSAS351172 SAMN35361931-rid18219253.denovo.25, whole genome shotgun sequence	3393..3654																																																avrA	ABOJZW010000002.1	552782..553651	99.54	870	0						
GCA_033059535.1_PDT001758394.1_genomic.fna	Salmonella_enterica	0.5212	215.085 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOJZY010000002.1 Salmonella enterica strain PNUSAS351175 SAMN35361936-rid18219243.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOJZY010000049.1 Salmonella enterica strain PNUSAS351175 SAMN35361936-rid18219243.guided.33, whole genome shotgun sequence	25529..25966	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOJZY010000016.1 Salmonella enterica strain PNUSAS351175 SAMN35361936-rid18219243.denovo.16, whole genome shotgun sequence	99959..100100																																																						avrA	ABOJZY010000001.1	433891..434759	100	869	0						
GCA_033059555.1_PDT001758393.1_genomic.fna	Salmonella_enterica	0.5209	306.598 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOJZZ010000010.1 Salmonella enterica strain PNUSAS351177 SAMN35361934-rid18219473.denovo.10, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOJZZ010000041.1 Salmonella enterica strain PNUSAS351177 SAMN35361934-rid18219473.guided.30, whole genome shotgun sequence	16759..17196	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOJZZ010000020.1 Salmonella enterica strain PNUSAS351177 SAMN35361934-rid18219473.denovo.20, whole genome shotgun sequence	34957..35490																																																						avrA	ABOJZZ010000001.1	187853..188719	98.966	870	0						
GCA_033059775.1_PDT001758242.1_genomic.fna	Salmonella_enterica	0.5214	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKAK010000001.1 Salmonella enterica strain PNUSAS351143 SAMN35360788-rid18218793.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKAK010000030.1 Salmonella enterica strain PNUSAS351143 SAMN35360788-rid18218793.guided.21, whole genome shotgun sequence	4528..4965	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKAK010000018.1 Salmonella enterica strain PNUSAS351143 SAMN35360788-rid18218793.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOKAK010000020.1 Salmonella enterica strain PNUSAS351143 SAMN35360788-rid18218793.denovo.23, whole genome shotgun sequence	3403..3664																																																avrA	ABOKAK010000002.1	553636..554505	99.54	870	0						
GCA_033059795.1_PDT001758244.1_genomic.fna	Salmonella_enterica	0.5222	195.369 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,sul1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKAJ010000001.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKAJ010000015.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.denovo.15, whole genome shotgun sequence	395..1186	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKAJ010000015.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.denovo.15, whole genome shotgun sequence	395..1186	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOKAJ010000038.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.denovo.46, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOKAJ010000038.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.denovo.46, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABOKAJ010000051.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.guided.32, whole genome shotgun sequence	436..1227	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKAJ010000051.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.guided.32, whole genome shotgun sequence	436..1227	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOKAJ010000052.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.guided.33, whole genome shotgun sequence	436..1227	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKAJ010000052.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.guided.33, whole genome shotgun sequence	436..1227	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOKAJ010000056.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.guided.40, whole genome shotgun sequence	203..640	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOKAJ010000058.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.guided.45, whole genome shotgun sequence	1096..2121	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOKAJ010000058.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.guided.45, whole genome shotgun sequence	91..867	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOKAJ010000035.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.denovo.42, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOKAJ010000057.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.guided.41, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOKAJ010000015.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.denovo.15, whole genome shotgun sequence	1691..2530	Sulfamethoxazole	U12338	sul1	99.88	840/840	ABOKAJ010000051.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.guided.32, whole genome shotgun sequence	1732..2571	Sulfamethoxazole	U12338	sul1	100	840/840	ABOKAJ010000052.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.guided.33, whole genome shotgun sequence	1732..2571	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOKAJ010000015.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.denovo.15, whole genome shotgun sequence	15047..16246	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOKAJ010000055.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.guided.38, whole genome shotgun sequence	141..1340	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOKAJ010000029.1 Salmonella enterica strain 23MD02CH01-S SAMN35360791-rid18219053.denovo.29, whole genome shotgun sequence	9109..9668																																																						avrA	ABOKAJ010000003.1	39615..40484	99.655	870	0						
GCA_033059815.1_PDT001758241.1_genomic.fna	Salmonella_enterica	0.5217	529.071 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOKAL010000001.1 Salmonella enterica strain PNUSAS351148 SAMN35360785-rid18219033.denovo.01, whole genome shotgun sequence	821447..821884	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOKAL010000022.1 Salmonella enterica strain PNUSAS351148 SAMN35360785-rid18219033.guided.13, whole genome shotgun sequence	16407..16844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKAL010000003.1	138357..139226	98.966	870	0						
GCA_033059835.1_PDT001758240.1_genomic.fna	Salmonella_enterica	0.5207	447.635 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKAM010000001.1 Salmonella enterica strain PNUSAS351142 SAMN35360786-rid18218783.denovo.01, whole genome shotgun sequence	821403..821840	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKAM010000026.1 Salmonella enterica strain PNUSAS351142 SAMN35360786-rid18218783.guided.20, whole genome shotgun sequence	2269..2706	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKAM010000002.1	551349..552218	99.195	870	0						
GCA_033059855.1_PDT001758239.1_genomic.fna	Salmonella_enterica	0.5212	284.02 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKAN010000001.1 Salmonella enterica strain PNUSAS351147 SAMN35360781-rid18219023.denovo.01, whole genome shotgun sequence	294040..294477	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKAN010000035.1 Salmonella enterica strain PNUSAS351147 SAMN35360781-rid18219023.guided.20, whole genome shotgun sequence	2204..2641	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	ABOKAN010000016.1 Salmonella enterica strain PNUSAS351147 SAMN35360781-rid18219023.denovo.16, whole genome shotgun sequence	17586..17845																																																						avrA	ABOKAN010000002.1	140565..141433	99.425	869	0						
GCA_033059875.1_PDT001758238.1_genomic.fna	Salmonella_enterica	0.5205	426.139 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKAP010000002.1 Salmonella enterica strain PNUSAS351146 SAMN35360787-rid18219013.denovo.02, whole genome shotgun sequence	529125..529562	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKAP010000045.1 Salmonella enterica strain PNUSAS351146 SAMN35360787-rid18219013.guided.17, whole genome shotgun sequence	44263..44700	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOKAP010000020.1 Salmonella enterica strain PNUSAS351146 SAMN35360787-rid18219013.denovo.21, whole genome shotgun sequence	5946..6588																																																						avrA	ABOKAP010000005.1	140592..141461	99.31	870	0						
GCA_033059895.1_PDT001758237.1_genomic.fna	Salmonella_enterica	0.5212	478.017 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKAO010000001.1 Salmonella enterica strain PNUSAS351129 SAMN35360782-rid18218773.denovo.01, whole genome shotgun sequence	774554..774991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKAO010000023.1 Salmonella enterica strain PNUSAS351129 SAMN35360782-rid18218773.guided.16, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKAO010000002.1	585485..586354	99.54	870	0						
GCA_033059915.1_PDT001758236.1_genomic.fna	Salmonella_enterica	0.5224	443.894 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I,Col440I	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKAQ010000001.1 Salmonella enterica strain PNUSAS348115 SAMN35360779-rid18219003.denovo.01, whole genome shotgun sequence	789108..789545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKAQ010000029.1 Salmonella enterica strain PNUSAS348115 SAMN35360779-rid18219003.guided.17, whole genome shotgun sequence	34183..34620	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOKAQ010000019.1 Salmonella enterica strain PNUSAS348115 SAMN35360779-rid18219003.denovo.22, whole genome shotgun sequence	547..675	enterobacteriales	Col440I	90.27	113 / 114	ABOKAQ010000016.1 Salmonella enterica strain PNUSAS348115 SAMN35360779-rid18219003.denovo.19, whole genome shotgun sequence	1832..1944		enterobacteriales	Col440I	96.49	114 / 114	ABOKAQ010000020.1 Salmonella enterica strain PNUSAS348115 SAMN35360779-rid18219003.denovo.23, whole genome shotgun sequence	155..268																																									avrA	ABOKAQ010000002.1	174869..175738	98.966	870	0						
GCA_033059935.1_PDT001758235.1_genomic.fna	Salmonella_enterica	0.5208	406.073 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKAR010000001.1 Salmonella enterica strain PNUSAS351132 SAMN35360784-rid18218763.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKAR010000028.1 Salmonella enterica strain PNUSAS351132 SAMN35360784-rid18218763.guided.17, whole genome shotgun sequence	21201..21638	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKAR010000020.1 Salmonella enterica strain PNUSAS351132 SAMN35360784-rid18218763.denovo.21, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOKAR010000005.1 Salmonella enterica strain PNUSAS351132 SAMN35360784-rid18218763.denovo.05, whole genome shotgun sequence	3436..3697		enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOKAR010000014.1 Salmonella enterica strain PNUSAS351132 SAMN35360784-rid18218763.denovo.14, whole genome shotgun sequence	84154..84295																																									avrA	ABOKAR010000004.1	140720..141589	99.54	870	0						
GCA_033059955.1_PDT001758234.1_genomic.fna	Salmonella_enterica	0.5214	489.496 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKAS010000001.1 Salmonella enterica strain PNUSAS351141 SAMN35360783-rid18218993.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKAS010000020.1 Salmonella enterica strain PNUSAS351141 SAMN35360783-rid18218993.guided.16, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKAS010000016.1 Salmonella enterica strain PNUSAS351141 SAMN35360783-rid18218993.denovo.17, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOKAS010000013.1 Salmonella enterica strain PNUSAS351141 SAMN35360783-rid18218993.denovo.13, whole genome shotgun sequence	37108..37369																																																avrA	ABOKAS010000002.1	553636..554505	99.54	870	0						
GCA_033059975.1_PDT001758233.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKAT010000001.1 Salmonella enterica strain PNUSAS351140 SAMN35360780-rid18218753.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKAT010000024.1 Salmonella enterica strain PNUSAS351140 SAMN35360780-rid18218753.guided.17, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKAT010000012.1 Salmonella enterica strain PNUSAS351140 SAMN35360780-rid18218753.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOKAT010000016.1 Salmonella enterica strain PNUSAS351140 SAMN35360780-rid18218753.denovo.18, whole genome shotgun sequence	3373..3634																																																avrA	ABOKAT010000002.1	553636..554505	99.54	870	0						
GCA_033059995.1_PDT001758230.1_genomic.fna	Salmonella_enterica	0.5215	185.93 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	Col8282,IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKAY010000001.1 Salmonella enterica strain PNUSAS351130 SAMN35360773-rid18218733.denovo.01, whole genome shotgun sequence	380041..380478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKAY010000046.1 Salmonella enterica strain PNUSAS351130 SAMN35360773-rid18218733.guided.32, whole genome shotgun sequence	6639..7076	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col8282	90.1	202 / 207	ABOKAY010000039.1 Salmonella enterica strain PNUSAS351130 SAMN35360773-rid18218733.denovo.42, whole genome shotgun sequence	191..392	enterobacteriales	IncI1-I(Alpha)	98.59	142 / 142	ABOKAY010000021.1 Salmonella enterica strain PNUSAS351130 SAMN35360773-rid18218733.denovo.21, whole genome shotgun sequence	67957..68098																																																avrA	ABOKAY010000002.1	218734..219602	99.77	870	0						
GCA_033060015.1_PDT001758229.1_genomic.fna	Salmonella_enterica	0.5214	407.05 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKAW010000001.1 Salmonella enterica strain PNUSAS351137 SAMN35360776-rid18218973.denovo.01, whole genome shotgun sequence	294040..294477	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKAW010000034.1 Salmonella enterica strain PNUSAS351137 SAMN35360776-rid18218973.guided.23, whole genome shotgun sequence	2423..2860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	ABOKAW010000016.1 Salmonella enterica strain PNUSAS351137 SAMN35360776-rid18218973.denovo.16, whole genome shotgun sequence	17586..17845																																																						avrA	ABOKAW010000002.1	140565..141433	99.425	869	0						
GCA_033060035.1_PDT001758232.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKAU010000001.1 Salmonella enterica strain PNUSAS351133 SAMN35360775-rid18218743.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKAU010000028.1 Salmonella enterica strain PNUSAS351133 SAMN35360775-rid18218743.guided.23, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKAU010000019.1 Salmonella enterica strain PNUSAS351133 SAMN35360775-rid18218743.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOKAU010000020.1 Salmonella enterica strain PNUSAS351133 SAMN35360775-rid18218743.denovo.22, whole genome shotgun sequence	3402..3663																																																avrA	ABOKAU010000002.1	553636..554505	99.54	870	0						
GCA_033060045.1_PDT001758231.1_genomic.fna	Salmonella_enterica	0.5207	729.667 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKAV010000001.1 Salmonella enterica strain PNUSAS351136 SAMN35360774-rid18218983.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKAV010000026.1 Salmonella enterica strain PNUSAS351136 SAMN35360774-rid18218983.guided.20, whole genome shotgun sequence	8956..9393	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKAV010000017.1 Salmonella enterica strain PNUSAS351136 SAMN35360774-rid18218983.denovo.18, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOKAV010000018.1 Salmonella enterica strain PNUSAS351136 SAMN35360774-rid18218983.denovo.21, whole genome shotgun sequence	3391..3652		enterobacteriales	IncX1	98.93	374 / 374	ABOKAV010000013.1 Salmonella enterica strain PNUSAS351136 SAMN35360774-rid18218983.denovo.13, whole genome shotgun sequence	32011..32384																																									avrA	ABOKAV010000003.1	553690..554559	99.54	870	0						
GCA_033060075.1_PDT001758228.1_genomic.fna	Salmonella_enterica	0.5209	406.08 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKAX010000001.1 Salmonella enterica strain PNUSAS351138 SAMN35360771-rid18218963.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKAX010000030.1 Salmonella enterica strain PNUSAS351138 SAMN35360771-rid18218963.guided.15, whole genome shotgun sequence	20999..21436	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKAX010000017.1 Salmonella enterica strain PNUSAS351138 SAMN35360771-rid18218963.denovo.19, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOKAX010000018.1 Salmonella enterica strain PNUSAS351138 SAMN35360771-rid18218963.denovo.21, whole genome shotgun sequence	3402..3663																																																avrA	ABOKAX010000002.1	553181..554050	99.54	870	0						
GCA_033060115.1_PDT001758227.1_genomic.fna	Salmonella_enterica	0.522	441.648 KB	4	aroC_2,dnaN_2,hemD_9,hisD_7,purE_105,sucA_19,thrA_86	2039	7:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_9	hisD	100	100	hisD_7	purE	100	100	purE_105	sucA	100	100	sucA_19	thrA	100	100	thrA_86	7	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Potsdam		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOKAZ010000001.1 Salmonella enterica strain PNUSAS351139 SAMN35360772-rid18218723.denovo.01, whole genome shotgun sequence	568263..568700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOKAZ010000027.1 Salmonella enterica strain PNUSAS351139 SAMN35360772-rid18218723.guided.18, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKAZ010000007.1	146821..147690	99.655	870	0						
GCA_033060135.1_PDT001758226.1_genomic.fna	Salmonella_enterica	0.5209	422.995 KB	4	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKBA010000001.1 Salmonella enterica strain PNUSAS351145 SAMN35360766-rid18218953.denovo.01, whole genome shotgun sequence	593971..594408	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKBA010000019.1 Salmonella enterica strain PNUSAS351145 SAMN35360766-rid18218953.denovo.23, whole genome shotgun sequence	6775..7611	Streptomycin	M28829	aph(3'')-Ib	100	780/804	ABOKBA010000019.1 Salmonella enterica strain PNUSAS351145 SAMN35360766-rid18218953.denovo.23, whole genome shotgun sequence	7611..8390	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOKBA010000027.1 Salmonella enterica strain PNUSAS351145 SAMN35360766-rid18218953.guided.19, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKBA010000029.1 Salmonella enterica strain PNUSAS351145 SAMN35360766-rid18218953.guided.22, whole genome shotgun sequence	7556..8392	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKBA010000029.1 Salmonella enterica strain PNUSAS351145 SAMN35360766-rid18218953.guided.22, whole genome shotgun sequence	6753..7556	Streptomycin	AF321551	sul2	100	816/816	ABOKBA010000019.1 Salmonella enterica strain PNUSAS351145 SAMN35360766-rid18218953.denovo.23, whole genome shotgun sequence	85..900	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOKBA010000029.1 Salmonella enterica strain PNUSAS351145 SAMN35360766-rid18218953.guided.22, whole genome shotgun sequence	5877..6692	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOKBA010000019.1 Salmonella enterica strain PNUSAS351145 SAMN35360766-rid18218953.denovo.23, whole genome shotgun sequence	4240..5514	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOKBA010000029.1 Salmonella enterica strain PNUSAS351145 SAMN35360766-rid18218953.guided.22, whole genome shotgun sequence	1263..2537	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABOKBA010000019.1 Salmonella enterica strain PNUSAS351145 SAMN35360766-rid18218953.denovo.23, whole genome shotgun sequence	1427..1557	enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABOKBA010000029.1 Salmonella enterica strain PNUSAS351145 SAMN35360766-rid18218953.guided.22, whole genome shotgun sequence	5220..5350																																																											
GCA_033060165.1_PDT001758225.1_genomic.fna	Salmonella_enterica	0.5213	406.326 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKBB010000001.1 Salmonella enterica strain PNUSAS351134 SAMN35360767-rid18218713.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKBB010000026.1 Salmonella enterica strain PNUSAS351134 SAMN35360767-rid18218713.guided.18, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKBB010000016.1 Salmonella enterica strain PNUSAS351134 SAMN35360767-rid18218713.denovo.17, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOKBB010000018.1 Salmonella enterica strain PNUSAS351134 SAMN35360767-rid18218713.denovo.21, whole genome shotgun sequence	3397..3658																																																avrA	ABOKBB010000002.1	553511..554380	99.54	870	0						
GCA_033060185.1_PDT001758223.1_genomic.fna	Salmonella_enterica	0.5211	492.513 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKBD010000001.1 Salmonella enterica strain PNUSAS351135 SAMN35360769-rid18218933.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKBD010000024.1 Salmonella enterica strain PNUSAS351135 SAMN35360769-rid18218933.guided.18, whole genome shotgun sequence	5005..5442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKBD010000015.1 Salmonella enterica strain PNUSAS351135 SAMN35360769-rid18218933.denovo.16, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABOKBD010000016.1 Salmonella enterica strain PNUSAS351135 SAMN35360769-rid18218933.denovo.19, whole genome shotgun sequence	3397..3658																																																avrA	ABOKBD010000002.1	552782..553651	99.54	870	0						
GCA_033060205.1_PDT001758224.1_genomic.fna	Salmonella_enterica	0.5221	273.33 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKBC010000003.1 Salmonella enterica strain PNUSAS351131 SAMN35360770-rid18218943.denovo.03, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKBC010000049.1 Salmonella enterica strain PNUSAS351131 SAMN35360770-rid18218943.guided.29, whole genome shotgun sequence	8017..8454	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOKBC010000023.1 Salmonella enterica strain PNUSAS351131 SAMN35360770-rid18218943.denovo.23, whole genome shotgun sequence	44721..45363	enterobacteriales	IncFII(S)	100	262 / 262	ABOKBC010000023.1 Salmonella enterica strain PNUSAS351131 SAMN35360770-rid18218943.denovo.23, whole genome shotgun sequence	29375..29636																																																avrA	ABOKBC010000007.1	94133..95001	100	869	0						
GCA_033060245.1_PDT001758222.1_genomic.fna	Salmonella_enterica	0.5213	400.332 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		3	Col(pHAD28),Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKBF010000001.1 Salmonella enterica strain PNUSAS351144 SAMN35360768-rid18218703.denovo.01, whole genome shotgun sequence	771929..772366	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKBF010000031.1 Salmonella enterica strain PNUSAS351144 SAMN35360768-rid18218703.guided.27, whole genome shotgun sequence	1187..1624	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOKBF010000022.1 Salmonella enterica strain PNUSAS351144 SAMN35360768-rid18218703.denovo.25, whole genome shotgun sequence	2176..2820	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOKBF010000030.1 Salmonella enterica strain PNUSAS351144 SAMN35360768-rid18218703.guided.24, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOKBF010000022.1 Salmonella enterica strain PNUSAS351144 SAMN35360768-rid18218703.denovo.25, whole genome shotgun sequence	1520..1650	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOKBF010000030.1 Salmonella enterica strain PNUSAS351144 SAMN35360768-rid18218703.guided.24, whole genome shotgun sequence	2515..2645		enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKBF010000019.1 Salmonella enterica strain PNUSAS351144 SAMN35360768-rid18218703.denovo.20, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABOKBF010000020.1 Salmonella enterica strain PNUSAS351144 SAMN35360768-rid18218703.denovo.22, whole genome shotgun sequence	3361..3622																																		avrA	ABOKBF010000002.1	553624..554493	99.54	870	0						
GCA_033060265.1_PDT001758208.1_genomic.fna	Salmonella_enterica	0.5221	203.729 KB	10	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKBH010000006.1 Salmonella enterica strain PNUSAS348148 SAMN35360580-rid18218573.denovo.06, whole genome shotgun sequence	160010..160447	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKBH010000046.1 Salmonella enterica strain PNUSAS348148 SAMN35360580-rid18218573.guided.35, whole genome shotgun sequence	10565..11002	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033060285.1_PDT001758209.1_genomic.fna	Salmonella_enterica	0.5202	428.809 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKBE010000001.1 Salmonella enterica strain PNUSAS348110 SAMN35360597-rid18218583.denovo.01, whole genome shotgun sequence	417242..417679	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKBE010000017.1 Salmonella enterica strain PNUSAS348110 SAMN35360597-rid18218583.guided.13, whole genome shotgun sequence	20611..21048	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKBE010000006.1	185153..186023	99.656	871	0						
GCA_033060305.1_PDT001758207.1_genomic.fna	Salmonella_enterica	0.5221	389.34 KB	4	aroC_22,dnaN_104,hemD_25,hisD_113,purE_12,sucA_107,thrA_4	2174	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_22	dnaN	100	100	dnaN_104	hemD	100	100	hemD_25	hisD	100	100	hisD_113	purE	100	100	purE_12	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABOKBI010000001.1 Salmonella enterica strain PNUSAS348108 SAMN35360586-rid18218563.denovo.01, whole genome shotgun sequence	505592..506029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABOKBI010000029.1 Salmonella enterica strain PNUSAS348108 SAMN35360586-rid18218563.guided.18, whole genome shotgun sequence	31714..32151	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKBI010000007.1	176067..176936	99.54	870	0						
GCA_033060325.1_PDT001758205.1_genomic.fna	Salmonella_enterica	0.5221	202.333 KB	10	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKBK010000002.1 Salmonella enterica strain PNUSAS348149 SAMN35360581-rid18218543.denovo.02, whole genome shotgun sequence	160010..160447	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKBK010000048.1 Salmonella enterica strain PNUSAS348149 SAMN35360581-rid18218543.guided.35, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033060345.1_PDT001758206.1_genomic.fna	Salmonella_enterica	0.5213	199.234 KB	7	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKBJ010000001.1 Salmonella enterica strain PNUSAS346700 SAMN35360590-rid18218553.denovo.01, whole genome shotgun sequence	404928..405365	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKBJ010000043.1 Salmonella enterica strain PNUSAS346700 SAMN35360590-rid18218553.guided.27, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKBJ010000002.1	153272..154141	99.195	870	0						
GCA_033060365.1_PDT001758204.1_genomic.fna	Salmonella_enterica	0.5216	160.166 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncQ1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKBL010000001.1 Salmonella enterica strain PNUSAS348111 SAMN35360584-rid18218533.denovo.01, whole genome shotgun sequence	207360..207797	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKBL010000036.1 Salmonella enterica strain PNUSAS348111 SAMN35360584-rid18218533.denovo.39, whole genome shotgun sequence	9417..10253	Streptomycin	M28829	aph(3'')-Ib	100	780/804	ABOKBL010000036.1 Salmonella enterica strain PNUSAS348111 SAMN35360584-rid18218533.denovo.39, whole genome shotgun sequence	10253..11032	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOKBL010000051.1 Salmonella enterica strain PNUSAS348111 SAMN35360584-rid18218533.guided.37, whole genome shotgun sequence	10166..10603	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKBL010000052.1 Salmonella enterica strain PNUSAS348111 SAMN35360584-rid18218533.guided.38, whole genome shotgun sequence	3413..4249	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKBL010000052.1 Salmonella enterica strain PNUSAS348111 SAMN35360584-rid18218533.guided.38, whole genome shotgun sequence	2610..3413	Streptomycin	AF321551	sul2	100	816/816	ABOKBL010000036.1 Salmonella enterica strain PNUSAS348111 SAMN35360584-rid18218533.denovo.39, whole genome shotgun sequence	85..900	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOKBL010000052.1 Salmonella enterica strain PNUSAS348111 SAMN35360584-rid18218533.guided.38, whole genome shotgun sequence	1734..2549	Sulfamethoxazole	AY034138	tet(A)	99.92	1200/1200	ABOKBL010000036.1 Salmonella enterica strain PNUSAS348111 SAMN35360584-rid18218533.denovo.39, whole genome shotgun sequence	6838..8037	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOKBL010000052.1 Salmonella enterica strain PNUSAS348111 SAMN35360584-rid18218533.guided.38, whole genome shotgun sequence	5629..6828	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	IncFIB(S)	100	643 / 643	ABOKBL010000028.1 Salmonella enterica strain PNUSAS348111 SAMN35360584-rid18218533.denovo.28, whole genome shotgun sequence	44751..45393	enterobacteriales	IncFII(S)	100	262 / 262	ABOKBL010000028.1 Salmonella enterica strain PNUSAS348111 SAMN35360584-rid18218533.denovo.28, whole genome shotgun sequence	29426..29687		enterobacteriales	IncQ1	100	796 / 796	ABOKBL010000036.1 Salmonella enterica strain PNUSAS348111 SAMN35360584-rid18218533.denovo.39, whole genome shotgun sequence	2239..3034																																									avrA	ABOKBL010000003.1	208685..209554	99.885	870	0						
GCA_033060715.1_PDT001758202.1_genomic.fna	Salmonella_enterica	0.5212	696.278 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKBO010000001.1 Salmonella enterica strain PNUSAS348114 SAMN35360587-rid18218513.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKBO010000024.1 Salmonella enterica strain PNUSAS348114 SAMN35360587-rid18218513.guided.18, whole genome shotgun sequence	24507..24944	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKBO010000015.1 Salmonella enterica strain PNUSAS348114 SAMN35360587-rid18218513.denovo.15, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOKBO010000018.1 Salmonella enterica strain PNUSAS348114 SAMN35360587-rid18218513.denovo.21, whole genome shotgun sequence	3391..3652																																																avrA	ABOKBO010000002.1	553636..554505	99.54	870	0						
GCA_033060755.1_PDT001758203.1_genomic.fna	Salmonella_enterica	0.521	478.48 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKBP010000001.1 Salmonella enterica strain PNUSAS348112 SAMN35360585-rid18218523.denovo.01, whole genome shotgun sequence	780652..781089	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKBP010000024.1 Salmonella enterica strain PNUSAS348112 SAMN35360585-rid18218523.guided.16, whole genome shotgun sequence	4008..4445	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKBP010000016.1 Salmonella enterica strain PNUSAS348112 SAMN35360585-rid18218523.denovo.18, whole genome shotgun sequence	6830..7472	enterobacteriales	IncFII(S)	100	262 / 262	ABOKBP010000013.1 Salmonella enterica strain PNUSAS348112 SAMN35360585-rid18218523.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABOKBP010000002.1	553678..554547	99.54	870	0						
GCA_033060775.1_PDT001758201.1_genomic.fna	Salmonella_enterica	0.5221	326.847 KB	5	aroC_2,dnaN_2,hemD_9,hisD_7,purE_105,sucA_19,thrA_86	2039	7:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_9	hisD	100	100	hisD_7	purE	100	100	purE_105	sucA	100	100	sucA_19	thrA	100	100	thrA_86	7	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Potsdam		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOKBQ010000001.1 Salmonella enterica strain PNUSAS348113 SAMN35360582-rid18218503.denovo.01, whole genome shotgun sequence	568263..568700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOKBQ010000028.1 Salmonella enterica strain PNUSAS348113 SAMN35360582-rid18218503.guided.21, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKBQ010000005.1	146821..147690	99.655	870	0						
GCA_033060805.1_PDT001758183.1_genomic.fna	Salmonella_enterica	0.5226	398.969 KB	6	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOKBT010000003.1 Salmonella enterica strain PNUSAS351125 SAMN35360541-rid18218323.denovo.03, whole genome shotgun sequence	256215..256652	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOKBT010000036.1 Salmonella enterica strain PNUSAS351125 SAMN35360541-rid18218323.guided.22, whole genome shotgun sequence	24947..25384	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKBT010000001.1	508462..509331	99.31	870	0						
GCA_033060825.1_PDT001758180.1_genomic.fna	Salmonella_enterica	0.5211	489.221 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKBV010000001.1 Salmonella enterica strain PNUSAS351120 SAMN35360519-rid18218293.denovo.01, whole genome shotgun sequence	293249..293686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKBV010000026.1 Salmonella enterica strain PNUSAS351120 SAMN35360519-rid18218293.guided.14, whole genome shotgun sequence	6049..6486	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKBV010000018.1 Salmonella enterica strain PNUSAS351120 SAMN35360519-rid18218293.denovo.20, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOKBV010000019.1 Salmonella enterica strain PNUSAS351120 SAMN35360519-rid18218293.denovo.22, whole genome shotgun sequence	3402..3663																																																avrA	ABOKBV010000002.1	140720..141589	99.54	870	0						
GCA_033060845.1_PDT001758181.1_genomic.fna	Salmonella_enterica	0.5201	283.029 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),pSL483	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKBU010000001.1 Salmonella enterica strain PNUSAS351127 SAMN35360540-rid18218303.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKBU010000032.1 Salmonella enterica strain PNUSAS351127 SAMN35360540-rid18218303.guided.20, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKBU010000023.1 Salmonella enterica strain PNUSAS351127 SAMN35360540-rid18218303.denovo.26, whole genome shotgun sequence	6824..7466	enterobacteriales	IncFII(S)	100	262 / 262	ABOKBU010000025.1 Salmonella enterica strain PNUSAS351127 SAMN35360540-rid18218303.denovo.28, whole genome shotgun sequence	3390..3651		enterobacteriales	pSL483	99.6	995 / 995	ABOKBU010000019.1 Salmonella enterica strain PNUSAS351127 SAMN35360540-rid18218303.denovo.21, whole genome shotgun sequence	26717..27711																																									avrA	ABOKBU010000006.1	174740..175609	99.54	870	0						
GCA_033060875.1_PDT001758200.1_genomic.fna	Salmonella_enterica	0.521	406.452 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKBR010000001.1 Salmonella enterica strain PNUSAS348109 SAMN35360583-rid18218493.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKBR010000027.1 Salmonella enterica strain PNUSAS348109 SAMN35360583-rid18218493.guided.18, whole genome shotgun sequence	31708..32145	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKBR010000016.1 Salmonella enterica strain PNUSAS348109 SAMN35360583-rid18218493.denovo.16, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABOKBR010000016.1 Salmonella enterica strain PNUSAS348109 SAMN35360583-rid18218493.denovo.16, whole genome shotgun sequence	53092..53353																																																avrA	ABOKBR010000002.1	585481..586350	99.54	870	0						
GCA_033060895.1_PDT001758187.1_genomic.fna	Salmonella_enterica	0.5192	544.454 KB	4	aroC_13,dnaN_181,hemD_49,hisD_13,purE_183,sucA_71,thrA_4	617	28:i:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col440II	aroC	100	100	aroC_13	dnaN	100	100	dnaN_181	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_183	sucA	100	100	sucA_71	thrA	100	100	thrA_4	28	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	Cotham		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKBS010000001.1 Salmonella enterica strain PNUSAS351126 SAMN35360539-rid18218363.denovo.01, whole genome shotgun sequence	149397..149834	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKBS010000035.1 Salmonella enterica strain PNUSAS351126 SAMN35360539-rid18218363.guided.24, whole genome shotgun sequence	3858..4295	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440II	97.16	282 / 282	ABOKBS010000022.1 Salmonella enterica strain PNUSAS351126 SAMN35360539-rid18218363.denovo.25, whole genome shotgun sequence	5136..5417																																																						avrA	ABOKBS010000004.1	402946..403815	99.425	870	0						
GCA_033060945.1_PDT001758179.1_genomic.fna	Salmonella_enterica	0.5217	263.191 KB	6	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOKBW010000001.1 Salmonella enterica strain PNUSAS351124 SAMN35360525-rid18218283.denovo.01, whole genome shotgun sequence	346964..347401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOKBW010000038.1 Salmonella enterica strain PNUSAS351124 SAMN35360525-rid18218283.guided.28, whole genome shotgun sequence	475..912	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKBW010000005.1	150413..151282	99.54	870	0						
GCA_033060965.1_PDT001758178.1_genomic.fna	Salmonella_enterica	0.521	476.569 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKBX010000001.1 Salmonella enterica strain PNUSAS351121 SAMN35360518-rid18218273.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKBX010000021.1 Salmonella enterica strain PNUSAS351121 SAMN35360518-rid18218273.denovo.23, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOKBX010000023.1 Salmonella enterica strain PNUSAS351121 SAMN35360518-rid18218273.denovo.25, whole genome shotgun sequence	3429..3690																																																avrA	ABOKBX010000002.1	553425..554294	99.54	870	0						
GCA_033060995.1_PDT001758177.1_genomic.fna	Salmonella_enterica	0.5218	404.955 KB	5	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOKBY010000001.1 Salmonella enterica strain PNUSAS351119 SAMN35360524-rid18218263.denovo.01, whole genome shotgun sequence	667315..667752	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOKBY010000039.1 Salmonella enterica strain PNUSAS351119 SAMN35360524-rid18218263.guided.26, whole genome shotgun sequence	5121..5558	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOKBY010000016.1 Salmonella enterica strain PNUSAS351119 SAMN35360524-rid18218263.denovo.16, whole genome shotgun sequence	65914..67119	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOKBY010000038.1 Salmonella enterica strain PNUSAS351119 SAMN35360524-rid18218263.guided.25, whole genome shotgun sequence	9696..10901	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOKBY010000016.1 Salmonella enterica strain PNUSAS351119 SAMN35360524-rid18218263.denovo.16, whole genome shotgun sequence	73505..73646	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOKBY010000038.1 Salmonella enterica strain PNUSAS351119 SAMN35360524-rid18218263.guided.25, whole genome shotgun sequence	3169..3310																																																avrA	ABOKBY010000002.1	407821..408690	99.31	870	0						
GCA_033061015.1_PDT001758176.1_genomic.fna	Salmonella_enterica	0.5211	257.763 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKBZ010000001.1 Salmonella enterica strain PNUSAS351123 SAMN35360521-rid18218253.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKBZ010000034.1 Salmonella enterica strain PNUSAS351123 SAMN35360521-rid18218253.guided.26, whole genome shotgun sequence	8793..9230	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKBZ010000024.1 Salmonella enterica strain PNUSAS351123 SAMN35360521-rid18218253.denovo.25, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOKBZ010000025.1 Salmonella enterica strain PNUSAS351123 SAMN35360521-rid18218253.denovo.27, whole genome shotgun sequence	3333..3594																																																avrA	ABOKBZ010000002.1	553077..553946	99.54	870	0						
GCA_033061035.1_PDT001758175.1_genomic.fna	Salmonella_enterica	0.5225	331.735 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKCA010000001.1 Salmonella enterica strain PNUSAS351117 SAMN35360522-rid18218243.denovo.01, whole genome shotgun sequence	454797..455234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKCA010000036.1 Salmonella enterica strain PNUSAS351117 SAMN35360522-rid18218243.guided.26, whole genome shotgun sequence	15383..15820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKCA010000007.1	39350..40219	98.966	870	0						
GCA_033061055.1_PDT001758173.1_genomic.fna	Salmonella_enterica	0.5224	513.742 KB	4	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOKCC010000001.1 Salmonella enterica strain PNUSAS351128 SAMN35360517-rid18218223.denovo.01, whole genome shotgun sequence	666962..667399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOKCC010000033.1 Salmonella enterica strain PNUSAS351128 SAMN35360517-rid18218223.guided.16, whole genome shotgun sequence	42403..42840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKCC010000003.1	407821..408690	99.31	870	0						
GCA_033061075.1_PDT001758174.1_genomic.fna	Salmonella_enterica	0.522	276.029 KB	5	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKCB010000001.1 Salmonella enterica strain PNUSAS351118 SAMN35360523-rid18218233.denovo.01, whole genome shotgun sequence	458316..458753	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKCB010000038.1 Salmonella enterica strain PNUSAS351118 SAMN35360523-rid18218233.guided.24, whole genome shotgun sequence	17435..17872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKCB010000008.1	39617..40486	99.77	870	0						
GCA_033061095.1_PDT001758170.1_genomic.fna	Salmonella_enterica	0.5219	207.445 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKCD010000001.1 Salmonella enterica strain PNUSAS351122 SAMN35360520-rid18218193.denovo.01, whole genome shotgun sequence	337481..337918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKCD010000052.1 Salmonella enterica strain PNUSAS351122 SAMN35360520-rid18218193.guided.31, whole genome shotgun sequence	20997..21434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKCD010000007.1	39714..40582	99.77	870	0						
GCA_033064585.1_PDT001953997.1_genomic.fna	Salmonella_enterica	0.5213	401.221 KB	4	aroC_13,dnaN_127,hemD_506,hisD_113,purE_114,sucA_107,thrA_4	3095	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_506	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKCK010000001.1 Salmonella enterica strain PNUSAS395705 SAMN37992585-rid19955833.denovo.01, whole genome shotgun sequence	498131..498568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKCK010000034.1 Salmonella enterica strain PNUSAS395705 SAMN37992585-rid19955833.guided.22, whole genome shotgun sequence	3072..3509	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKCK010000002.1	140447..141316	99.425	870	0						
GCA_033064605.1_PDT001953995.1_genomic.fna	Salmonella_enterica	0.5227	679.078 KB	2	aroC_111,dnaN_109,hemD_17,hisD_149,purE_161,sucA_13,thrA_23	536	28:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_109	hemD	100	100	hemD_17	hisD	100	100	hisD_149	purE	100	100	purE_161	sucA	100	100	sucA_13	thrA	100	100	thrA_23	28	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Pomona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKCL010000001.1 Salmonella enterica strain PNUSAS395699 SAMN37992582-rid19955813.denovo.01, whole genome shotgun sequence	405334..405771	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKCL010000025.1 Salmonella enterica strain PNUSAS395699 SAMN37992582-rid19955813.guided.17, whole genome shotgun sequence	4002..4439	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKCL010000002.1	149843..150712	99.54	870	0						
GCA_033064625.1_PDT001953996.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKCM010000001.1 Salmonella enterica strain PNUSAS395703 SAMN37992584-rid19955823.denovo.01, whole genome shotgun sequence	774364..774801	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKCM010000026.1 Salmonella enterica strain PNUSAS395703 SAMN37992584-rid19955823.guided.15, whole genome shotgun sequence	8853..9290	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKCM010000013.1 Salmonella enterica strain PNUSAS395703 SAMN37992584-rid19955823.denovo.13, whole genome shotgun sequence	8458..9100	enterobacteriales	IncFII(S)	100	262 / 262	ABOKCM010000013.1 Salmonella enterica strain PNUSAS395703 SAMN37992584-rid19955823.denovo.13, whole genome shotgun sequence	53092..53353																																																avrA	ABOKCM010000002.1	553691..554560	99.54	870	0						
GCA_033064645.1_PDT001953993.1_genomic.fna	Salmonella_enterica	0.5212	332.747 KB	4	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKCN010000001.1 Salmonella enterica strain PNUSAS395707 SAMN37992576-rid19955793.denovo.01, whole genome shotgun sequence	838366..838803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKCN010000028.1 Salmonella enterica strain PNUSAS395707 SAMN37992576-rid19955793.guided.20, whole genome shotgun sequence	15710..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_033064665.1_PDT001953990.1_genomic.fna	Salmonella_enterica	0.5222	263.963 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKCO010000003.1 Salmonella enterica strain PNUSAS395704 SAMN37992577-rid19955763.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKCO010000044.1 Salmonella enterica strain PNUSAS395704 SAMN37992577-rid19955763.guided.33, whole genome shotgun sequence	10590..11027	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOKCO010000036.1 Salmonella enterica strain PNUSAS395704 SAMN37992577-rid19955763.denovo.39, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOKCO010000046.1 Salmonella enterica strain PNUSAS395704 SAMN37992577-rid19955763.guided.40, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOKCO010000036.1 Salmonella enterica strain PNUSAS395704 SAMN37992577-rid19955763.denovo.39, whole genome shotgun sequence	1150..1280	enterobacteriales	IncFIB(S)	100	643 / 643	ABOKCO010000023.1 Salmonella enterica strain PNUSAS395704 SAMN37992577-rid19955763.denovo.23, whole genome shotgun sequence	44721..45363		enterobacteriales	IncFII(S)	100	262 / 262	ABOKCO010000023.1 Salmonella enterica strain PNUSAS395704 SAMN37992577-rid19955763.denovo.23, whole genome shotgun sequence	29375..29636																																									avrA	ABOKCO010000001.1	446730..447598	100	869	0						
GCA_033065595.1_PDT001954003.1_genomic.fna	Salmonella_enterica	0.5194	604.687 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOKCT010000001.1 Salmonella enterica strain PNUSAS395706 SAMN37992587-rid19955893.denovo.01, whole genome shotgun sequence	771552..771989	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOKCT010000026.1 Salmonella enterica strain PNUSAS395706 SAMN37992587-rid19955893.guided.11, whole genome shotgun sequence	11625..12062	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOKCT010000019.1 Salmonella enterica strain PNUSAS395706 SAMN37992587-rid19955893.denovo.22, whole genome shotgun sequence	239..369																																																						avrA	ABOKCT010000002.1	561362..562231	99.425	870	0						
GCA_033065635.1_PDT001954001.1_genomic.fna	Salmonella_enterica	0.5187	366.364 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKCU010000001.1 Salmonella enterica strain PNUSAS395701 SAMN37992583-rid19955873.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKCU010000041.1 Salmonella enterica strain PNUSAS395701 SAMN37992583-rid19955873.guided.22, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOKCU010000008.1 Salmonella enterica strain PNUSAS395701 SAMN37992583-rid19955873.denovo.08, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOKCU010000042.1 Salmonella enterica strain PNUSAS395701 SAMN37992583-rid19955873.guided.28, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKCU010000002.1	170681..171550	99.195	870	0						
GCA_033065655.1_PDT001953999.1_genomic.fna	Salmonella_enterica	0.5197	153.393 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.E84G	0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOKCV010000009.1 Salmonella enterica strain PNUSAS395700 SAMN37992588-rid19955853.denovo.09, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOKCV010000068.1 Salmonella enterica strain PNUSAS395700 SAMN37992588-rid19955853.guided.43, whole genome shotgun sequence	6034..6468	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.E84G	GAA -> GGA	E -> G	Nalidixic Acid, Ciprofloxacin	27221661																																																																																	
GCA_033065675.1_PDT001953989.1_genomic.fna	Salmonella_enterica	0.5213	381.834 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKCX010000001.1 Salmonella enterica strain PNUSAS395696 SAMN37992579-rid19955753.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKCX010000029.1 Salmonella enterica strain PNUSAS395696 SAMN37992579-rid19955753.guided.23, whole genome shotgun sequence	4060..4497	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKCX010000021.1 Salmonella enterica strain PNUSAS395696 SAMN37992579-rid19955753.denovo.22, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOKCX010000017.1 Salmonella enterica strain PNUSAS395696 SAMN37992579-rid19955753.denovo.18, whole genome shotgun sequence	37108..37369																																																avrA	ABOKCX010000002.1	553636..554505	99.54	870	0						
GCA_033065715.1_PDT001953994.1_genomic.fna	Salmonella_enterica	0.5225	276.204 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_112,sucA_9,thrA_2	313	4:i:1,2	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_112	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKCW010000001.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.denovo.01, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKCW010000029.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.denovo.30, whole genome shotgun sequence	13991..14827	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKCW010000029.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.denovo.30, whole genome shotgun sequence	14827..15630	Streptomycin	AF321551	aadA1	100	792/792	ABOKCW010000029.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.denovo.30, whole genome shotgun sequence	11387..12178	Spectinomycin, Streptomycin	JX185132	aadA1	100	792/792	ABOKCW010000058.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.guided.32, whole genome shotgun sequence	1811..2602	Spectinomycin, Streptomycin	JX185132	aph(6)-Id	100	837/837	ABOKCW010000059.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.guided.39, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKCW010000059.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.guided.39, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOKCW010000060.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.guided.40, whole genome shotgun sequence	2634..3071	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOKCW010000039.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.denovo.45, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOKCW010000061.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.guided.44, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	ABOKCW010000029.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.denovo.30, whole genome shotgun sequence	3311..3970	Chloramphenicol	V00622	catA1	99.85	660/660	ABOKCW010000058.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.guided.32, whole genome shotgun sequence	10019..10678	Chloramphenicol	V00622	sul1	100	840/840	ABOKCW010000029.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.denovo.30, whole genome shotgun sequence	10043..10882	Sulfamethoxazole	U12338	sul2	100	816/816	ABOKCW010000029.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.denovo.30, whole genome shotgun sequence	15691..16506	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABOKCW010000058.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.guided.32, whole genome shotgun sequence	3107..3946	Sulfamethoxazole	U12338	sul2	100	816/816	ABOKCW010000059.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.guided.39, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	dfrA1	99.79	474/474	ABOKCW010000029.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.denovo.30, whole genome shotgun sequence	12271..12744	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABOKCW010000029.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.denovo.30, whole genome shotgun sequence	12271..12744	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABOKCW010000029.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.denovo.30, whole genome shotgun sequence	12271..12744	Trimethoprim	X00926	dfrA1	99.79	474/474	ABOKCW010000058.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.guided.32, whole genome shotgun sequence	1245..1718	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABOKCW010000058.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.guided.32, whole genome shotgun sequence	1245..1718	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABOKCW010000058.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.guided.32, whole genome shotgun sequence	1245..1718	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFIB(S)	100	643 / 643	ABOKCW010000019.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.denovo.19, whole genome shotgun sequence	62685..63327	enterobacteriales	IncFII(S)	100	262 / 262	ABOKCW010000019.1 Salmonella enterica strain PNUSAS395698 SAMN37992578-rid19955803.denovo.19, whole genome shotgun sequence	47363..47624																																																avrA	ABOKCW010000002.1	483290..484159	99.885	870	0						
GCA_033065775.1_PDT001751214.1_genomic.fna	Salmonella_enterica	0.5209	278.344 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	3	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19,tet(B),tet(B)	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKCZ010000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-SD-IA-0037 SAMN35305505-rid18228443.denovo.01, whole genome shotgun sequence	337846..338283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKCZ010000053.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-SD-IA-0037 SAMN35305505-rid18228443.guided.28, whole genome shotgun sequence	9915..10352	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOKCZ010000037.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-SD-IA-0037 SAMN35305505-rid18228443.denovo.41, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOKCZ010000056.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-SD-IA-0037 SAMN35305505-rid18228443.guided.42, whole genome shotgun sequence	720..1364	Ciprofloxacin	EU432277	tet(B)	100	1206/1206	ABOKCZ010000027.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-SD-IA-0037 SAMN35305505-rid18228443.denovo.29, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOKCZ010000054.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-SD-IA-0037 SAMN35305505-rid18228443.guided.31, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	100	131 / 131	ABOKCZ010000037.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-SD-IA-0037 SAMN35305505-rid18228443.denovo.41, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOKCZ010000056.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain SAL-22-VL-SD-IA-0037 SAMN35305505-rid18228443.guided.42, whole genome shotgun sequence	64..194																																																avrA	ABOKCZ010000002.1	540743..541612	99.885	870	0						
GCA_033065795.1_PDT001751213.1_genomic.fna	Salmonella_enterica	0.5188	401.508 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKDB010000001.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-22-VL-SD-IA-0043 SAMN35305506-rid18228413.denovo.01, whole genome shotgun sequence	486124..486561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKDB010000043.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-22-VL-SD-IA-0043 SAMN35305506-rid18228413.guided.29, whole genome shotgun sequence	4033..4470	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOKDB010000003.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-22-VL-SD-IA-0043 SAMN35305506-rid18228413.denovo.03, whole genome shotgun sequence	388761..389183	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOKDB010000041.1 Salmonella enterica subsp. enterica serovar Agona strain SAL-22-VL-SD-IA-0043 SAMN35305506-rid18228413.guided.27, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKDB010000002.1	122302..123171	99.195	870	0						
GCA_033065815.1_PDT001751212.1_genomic.fna	Salmonella_enterica	0.5211	338.002 KB	6	aroC_84,dnaN_76,hemD_38,hisD_16,purE_12,sucA_13,thrA_4	226	6,14:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_76	hemD	100	100	hemD_38	hisD	100	100	hisD_16	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	6,14	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Carrau		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKDD010000001.1 Salmonella enterica subsp. enterica serovar Carrau strain SAL-22-VL-SD-NC-0021 SAMN35305515-rid18228403.denovo.01, whole genome shotgun sequence	214723..215160	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKDD010000062.1 Salmonella enterica subsp. enterica serovar Carrau strain SAL-22-VL-SD-NC-0021 SAMN35305515-rid18228403.guided.13, whole genome shotgun sequence	44272..44709	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKDD010000004.1	126730..127598	98.851	870	0						
GCA_033065835.1_PDT001751210.1_genomic.fna	Salmonella_enterica	0.5203	284.754 KB	6	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKDF010000001.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-SD-NC-0025 SAMN35305517-rid18228433.denovo.01, whole genome shotgun sequence	383528..383965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKDF010000058.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-SD-NC-0025 SAMN35305517-rid18228433.guided.19, whole genome shotgun sequence	11141..11578	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKDF010000011.1	150798..151668	99.196	871	0						
GCA_033065865.1_PDT001751211.1_genomic.fna	Salmonella_enterica	0.5215	639.935 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKDE010000001.1 Salmonella enterica subsp. enterica serovar Javiana strain SAL-22-VL-SD-NC-0023 SAMN35305516-rid18228393.denovo.01, whole genome shotgun sequence	597027..597464	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKDE010000021.1 Salmonella enterica subsp. enterica serovar Javiana strain SAL-22-VL-SD-NC-0023 SAMN35305516-rid18228393.guided.14, whole genome shotgun sequence	26812..27249	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKDE010000004.1	544714..545582	99.425	870	0						
GCA_033065885.1_PDT001751209.1_genomic.fna	Salmonella_enterica	0.5225	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKDG010000001.1 Salmonella enterica subsp. houtenae serovar 43:z4,z32:- strain SAL-22-VL-SD-NC-0026 SAMN35305518-rid18228383.denovo.01, whole genome shotgun sequence	873477..873914	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKDG010000032.1 Salmonella enterica subsp. houtenae serovar 43:z4,z32:- strain SAL-22-VL-SD-NC-0026 SAMN35305518-rid18228383.guided.17, whole genome shotgun sequence	41926..42363	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKDG010000002.1	129887..130756	98.966	870	0						
GCA_033065905.1_PDT001751204.1_genomic.fna	Salmonella_enterica	0.522	174.139 KB	10	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOKDJ010000014.1 Salmonella enterica subsp. enterica serovar Cerro strain SAL-22-VL-SD-MI-0038 SAMN35305510-rid18228363.denovo.14, whole genome shotgun sequence	98145..98582	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOKDJ010000066.1 Salmonella enterica subsp. enterica serovar Cerro strain SAL-22-VL-SD-MI-0038 SAMN35305510-rid18228363.guided.52, whole genome shotgun sequence	4282..4719	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOKDJ010000054.1 Salmonella enterica subsp. enterica serovar Cerro strain SAL-22-VL-SD-MI-0038 SAMN35305510-rid18228363.denovo.57, whole genome shotgun sequence	1319..1449	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOKDJ010000055.1 Salmonella enterica subsp. enterica serovar Cerro strain SAL-22-VL-SD-MI-0038 SAMN35305510-rid18228363.denovo.58, whole genome shotgun sequence	1077..1207		enterobacteriales	Col440I	91.74	109 / 114	ABOKDJ010000053.1 Salmonella enterica subsp. enterica serovar Cerro strain SAL-22-VL-SD-MI-0038 SAMN35305510-rid18228363.denovo.56, whole genome shotgun sequence	2246..2354		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOKDJ010000029.1 Salmonella enterica subsp. enterica serovar Cerro strain SAL-22-VL-SD-MI-0038 SAMN35305510-rid18228363.denovo.29, whole genome shotgun sequence	8691..8832																																		avrA	ABOKDJ010000008.1	145454..146323	99.425	870	0						
GCA_033065925.1_PDT001751207.1_genomic.fna	Salmonella_enterica	0.5218	728.715 KB	3	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOKDH010000001.1 Salmonella enterica subsp. enterica serovar Uganda strain SAL-22-VL-SD-IA-0044 SAMN35305507-rid18228373.denovo.01, whole genome shotgun sequence	540044..540481	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOKDH010000027.1 Salmonella enterica subsp. enterica serovar Uganda strain SAL-22-VL-SD-IA-0044 SAMN35305507-rid18228373.guided.15, whole genome shotgun sequence	5037..5474	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKDH010000003.1	545591..546459	99.655	869	0						
GCA_033065945.1_PDT001751202.1_genomic.fna	Salmonella_enterica	0.5204	401.726 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	11	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKDK010000003.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.denovo.03, whole genome shotgun sequence	159455..159892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKDK010000020.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.denovo.22, whole genome shotgun sequence	7072..7908	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKDK010000020.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.denovo.22, whole genome shotgun sequence	7908..8711	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOKDK010000030.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.denovo.38, whole genome shotgun sequence	136..951	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	aac(6')-Iaa	98.63	438/438	ABOKDK010000045.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.guided.13, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKDK010000048.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.guided.27, whole genome shotgun sequence	1701..2537	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKDK010000048.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.guided.27, whole genome shotgun sequence	898..1701	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOKDK010000052.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.guided.37, whole genome shotgun sequence	127..942	Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	blaCMY-2	100	1146/1146	ABOKDK010000020.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.denovo.22, whole genome shotgun sequence	37928..39073	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	823/861	ABOKDK010000025.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.denovo.29, whole genome shotgun sequence	3300..4122	Unknown Beta-lactam	KP050491	blaTEM-206	100	823/861	ABOKDK010000025.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.denovo.29, whole genome shotgun sequence	3300..4122	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	823/861	ABOKDK010000025.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.denovo.29, whole genome shotgun sequence	3300..4122	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOKDK010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.guided.32, whole genome shotgun sequence	1240..2385	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOKDK010000051.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.guided.35, whole genome shotgun sequence	41..864	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOKDK010000051.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.guided.35, whole genome shotgun sequence	41..864	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOKDK010000051.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.guided.35, whole genome shotgun sequence	41..864	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABOKDK010000020.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.denovo.22, whole genome shotgun sequence	2723..3936	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOKDK010000050.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.guided.34, whole genome shotgun sequence	33..1246	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOKDK010000020.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.denovo.22, whole genome shotgun sequence	8772..9587	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOKDK010000048.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.guided.27, whole genome shotgun sequence	22..837	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOKDK010000020.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.denovo.22, whole genome shotgun sequence	4537..5811	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOKDK010000048.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.guided.27, whole genome shotgun sequence	3798..5072	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncC	100	417 / 417	ABOKDK010000017.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.denovo.19, whole genome shotgun sequence	17838..18254	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOKDK010000015.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.denovo.16, whole genome shotgun sequence	29618..29877		enterobacteriales	IncX1	98.66	374 / 374	ABOKDK010000015.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0040 SAMN35305512-rid18228343.denovo.16, whole genome shotgun sequence	65472..65845																																									avrA	ABOKDK010000008.1	173549..174417	99.54	870	0						
GCA_033065965.1_PDT001751203.1_genomic.fna	Salmonella_enterica	0.5211	401.704 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	10	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(6)-Id,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,blaCMY-2,blaTEM-214,blaTEM-206,blaTEM-1B,floR,floR,sul2,sul2,tet(A),tet(A)	0		3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKDI010000003.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.denovo.03, whole genome shotgun sequence	159453..159890	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKDI010000021.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.denovo.21, whole genome shotgun sequence	7072..7908	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKDI010000021.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.denovo.21, whole genome shotgun sequence	7908..8711	Streptomycin	AF321551	aac(6')-Iaa	98.63	438/438	ABOKDI010000046.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.guided.26, whole genome shotgun sequence	7634..8071	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	804/804	ABOKDI010000048.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.guided.32, whole genome shotgun sequence	3458..4261	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOKDI010000053.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.guided.42, whole genome shotgun sequence	24..860	Streptomycin	M28829	blaCMY-2	100	1146/1146	ABOKDI010000021.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.denovo.21, whole genome shotgun sequence	37928..39073	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOKDI010000028.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.denovo.31, whole genome shotgun sequence	3300..4123	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOKDI010000028.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.denovo.31, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOKDI010000028.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.denovo.31, whole genome shotgun sequence	3300..4123	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaCMY-2	100	1146/1146	ABOKDI010000049.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.guided.35, whole genome shotgun sequence	766..1911	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaTEM-214	100	824/861	ABOKDI010000052.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.guided.41, whole genome shotgun sequence	37..860	Unknown Beta-lactam	KP050491	blaTEM-206	100	824/861	ABOKDI010000052.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.guided.41, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	KC783461	blaTEM-1B	100	824/861	ABOKDI010000052.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.guided.41, whole genome shotgun sequence	37..860	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	floR	98.19	1214/1215	ABOKDI010000021.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.denovo.21, whole genome shotgun sequence	2723..3936	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOKDI010000051.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.guided.38, whole genome shotgun sequence	297..1510	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOKDI010000021.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.denovo.21, whole genome shotgun sequence	8772..9587	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOKDI010000048.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.guided.32, whole genome shotgun sequence	2582..3397	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOKDI010000021.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.denovo.21, whole genome shotgun sequence	4537..5811	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOKDI010000050.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.guided.36, whole genome shotgun sequence	756..2030	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncC	100	417 / 417	ABOKDI010000019.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.denovo.19, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOKDI010000017.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.denovo.17, whole genome shotgun sequence	29618..29877		enterobacteriales	IncX1	98.66	374 / 374	ABOKDI010000024.1 Salmonella enterica subsp. enterica serovar Dublin strain SAL-22-VL-SD-MI-0039 SAMN35305511-rid18228353.denovo.25, whole genome shotgun sequence	8722..9095																																									avrA	ABOKDI010000008.1	173549..174417	99.54	870	0						
GCA_033066005.1_PDT001751200.1_genomic.fna	Salmonella_enterica	0.5207	364.555 KB	6	aroC_16,dnaN_2,hemD_95,hisD_117,purE_36,sucA_39,thrA_117	350	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	ColRNAI,IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_95	hisD	100	100	hisD_117	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_117	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKDM010000001.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-SD-MI-0048 SAMN35305514-rid18228423.denovo.01, whole genome shotgun sequence	526442..526879	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKDM010000035.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-SD-MI-0048 SAMN35305514-rid18228423.guided.25, whole genome shotgun sequence	3650..4087	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABOKDM010000023.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-SD-MI-0048 SAMN35305514-rid18228423.denovo.26, whole genome shotgun sequence	3981..4111	enterobacteriales	IncFII(p96A)	100	534 / 534	ABOKDM010000019.1 Salmonella enterica subsp. enterica serovar Newport strain SAL-22-VL-SD-MI-0048 SAMN35305514-rid18228423.denovo.20, whole genome shotgun sequence	2465..2998																																																avrA	ABOKDM010000012.1	109930..110799	99.31	870	0						
GCA_033066025.1_PDT001751201.1_genomic.fna	Salmonella_enterica	0.5206	129.584 KB	13	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col440I,IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOKDL010000022.1 Salmonella enterica subsp. enterica serovar Cerro strain SAL-22-VL-SD-MI-0044 SAMN35305513-rid18228333.denovo.22, whole genome shotgun sequence	77751..78188	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOKDL010000067.1 Salmonella enterica subsp. enterica serovar Cerro strain SAL-22-VL-SD-MI-0044 SAMN35305513-rid18228333.guided.43, whole genome shotgun sequence	16453..16890	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	91.74	109 / 114	ABOKDL010000055.1 Salmonella enterica subsp. enterica serovar Cerro strain SAL-22-VL-SD-MI-0044 SAMN35305513-rid18228333.denovo.58, whole genome shotgun sequence	2246..2354	enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOKDL010000045.1 Salmonella enterica subsp. enterica serovar Cerro strain SAL-22-VL-SD-MI-0044 SAMN35305513-rid18228333.denovo.47, whole genome shotgun sequence	15100..15633																																																avrA	ABOKDL010000016.1	62014..62883	99.425	870	0						
GCA_033066625.1_PDT001953998.1_genomic.fna	Salmonella_enterica	0.5208	442.387 KB	5	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKDN010000008.1 Salmonella enterica strain PNUSAS395694 SAMN37992589-rid19955843.denovo.08, whole genome shotgun sequence	145169..145606	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKDN010000024.1 Salmonella enterica strain PNUSAS395694 SAMN37992589-rid19955843.guided.20, whole genome shotgun sequence	18007..18444	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABOKDN010000015.1 Salmonella enterica strain PNUSAS395694 SAMN37992589-rid19955843.denovo.15, whole genome shotgun sequence	38594..38855																																																						avrA	ABOKDN010000001.1	559516..560385	99.425	870	0						
GCA_033069585.1_PDT001953992.1_genomic.fna	Salmonella_enterica	0.5209	489.739 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKDO010000001.1 Salmonella enterica strain PNUSAS395702 SAMN37992580-rid19955783.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKDO010000030.1 Salmonella enterica strain PNUSAS395702 SAMN37992580-rid19955783.guided.19, whole genome shotgun sequence	11142..11579	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKDO010000019.1 Salmonella enterica strain PNUSAS395702 SAMN37992580-rid19955783.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOKDO010000020.1 Salmonella enterica strain PNUSAS395702 SAMN37992580-rid19955783.denovo.23, whole genome shotgun sequence	3391..3652		enterobacteriales	IncI1-I(Alpha)	91.49	141 / 142	ABOKDO010000013.1 Salmonella enterica strain PNUSAS395702 SAMN37992580-rid19955783.denovo.13, whole genome shotgun sequence	80249..80388																																									avrA	ABOKDO010000002.1	553181..554050	99.54	870	0						
GCA_033069615.1_PDT001953991.1_genomic.fna	Salmonella_enterica	0.5219	219.315 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKDP010000001.1 Salmonella enterica strain PNUSAS395695 SAMN37992581-rid19955773.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKDP010000050.1 Salmonella enterica strain PNUSAS395695 SAMN37992581-rid19955773.guided.33, whole genome shotgun sequence	2906..3343	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKDP010000005.1	95321..96189	99.77	870	0						
GCA_033074475.1_PDT001954035.1_genomic.fna	Salmonella_enterica	0.5196	142.929 KB	10	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(pSE11),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKDS010000011.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325984 SAMN37993359-rid19956213.denovo.11, whole genome shotgun sequence	83316..83753	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKDS010000086.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325984 SAMN37993359-rid19956213.guided.25, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pSE11)	94.34	265 / 264	ABOKDS010000048.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325984 SAMN37993359-rid19956213.denovo.51, whole genome shotgun sequence	4356..4615	enterobacteriales	IncX1	100	373 / 373	ABOKDS010000062.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325984 SAMN37993359-rid19956213.denovo.65, whole genome shotgun sequence	1191..1563																																																avrA	ABOKDS010000030.1	39484..40353	99.655	870	0						
GCA_033074495.1_PDT001954034.1_genomic.fna	Salmonella_enterica	0.5212	333.186 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	10	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aph(3')-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKDT010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKDT010000024.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.denovo.26, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKDT010000024.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.denovo.26, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOKDT010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.denovo.50, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOKDT010000043.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.denovo.50, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aph(3')-Ia	100	816/816	ABOKDT010000050.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.denovo.60, whole genome shotgun sequence	93..908	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	X62115	aac(6')-Iaa	97.49	438/438	ABOKDT010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.guided.34, whole genome shotgun sequence	16091..16528	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKDT010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.guided.36, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKDT010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.guided.36, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOKDT010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.guided.52, whole genome shotgun sequence	210..1235	Hygromycin	V01499	aph(3')-Ia	100	816/816	ABOKDT010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.guided.58, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	X62115	aac(3)-IV	100	777/777	ABOKDT010000067.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.guided.62, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOKDT010000046.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.denovo.54, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOKDT010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.guided.55, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOKDT010000039.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.denovo.44, whole genome shotgun sequence	2857..4070	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOKDT010000062.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.guided.46, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOKDT010000024.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.denovo.26, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABOKDT010000060.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.guided.36, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOKDT010000024.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.denovo.26, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOKDT010000061.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.guided.38, whole genome shotgun sequence	2915..4114	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOKDT010000037.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.denovo.42, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOKDT010000063.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.guided.47, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOKDT010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325960 SAMN37993356-rid19956203.denovo.29, whole genome shotgun sequence	12237..12796																																																						avrA	ABOKDT010000003.1	149828..150697	99.655	870	0						
GCA_033074515.1_PDT001954032.1_genomic.fna	Salmonella_enterica	0.5206	163.496 KB	10	aroC_7,dnaN_1216,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	9285	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_7	dnaN	100	100	dnaN_1216	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKDU010000001.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12325908 SAMN37993312-rid19956183.denovo.01, whole genome shotgun sequence	376219..376656	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKDU010000082.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12325908 SAMN37993312-rid19956183.guided.40, whole genome shotgun sequence	10129..10566	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOKDU010000059.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12325908 SAMN37993312-rid19956183.denovo.62, whole genome shotgun sequence	1480..1610	enterobacteriales	Col440I	94.74	114 / 114	ABOKDU010000067.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12325908 SAMN37993312-rid19956183.denovo.70, whole genome shotgun sequence	787..900																																																avrA	ABOKDU010000002.1	99740..100609	98.966	870	0						
GCA_033074535.1_PDT001954024.1_genomic.fna	Salmonella_enterica	0.5208	526.124 KB	4	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQOGH010000001.1 TPA_asm: Salmonella enterica strain Salmonella enterica subsp. enterica serovar Muenchen SAMN37939468-rid19956103.denovo.01, whole genome shotgun sequence	823038..823475	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQOGH010000027.1 TPA_asm: Salmonella enterica strain Salmonella enterica subsp. enterica serovar Muenchen SAMN37939468-rid19956103.guided.14, whole genome shotgun sequence	44283..44720	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQOGH010000002.1	407501..408370	99.425	870	0						
GCA_033074555.1_PDT001954029.1_genomic.fna	Salmonella_enterica	0.5218	508.461 KB	3	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKDV010000001.1 Salmonella enterica strain PNUSAS395597 SAMN37992755-rid19956153.denovo.01, whole genome shotgun sequence	499296..499733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKDV010000022.1 Salmonella enterica strain PNUSAS395597 SAMN37992755-rid19956153.guided.17, whole genome shotgun sequence	2653..3090	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKDV010000003.1	160504..161373	98.966	870	0						
GCA_033074575.1_PDT001954012.1_genomic.fna	Salmonella_enterica	0.52	358.452 KB	6	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28!,purE_28!,sucA_14,thrA_96*	1384*!,2036*!,2224*!,3841*!	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28!	purE	100	100	purE_28!	sucA	100	100	sucA_14	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQOGL010000001.1 TPA_asm: Salmonella enterica strain U8A3 SAMN37050968-rid19955983.denovo.01, whole genome shotgun sequence	608596..609033	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQOGL010000057.1 TPA_asm: Salmonella enterica strain U8A3 SAMN37050968-rid19955983.guided.12, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQOGL010000013.1 TPA_asm: Salmonella enterica strain U8A3 SAMN37050968-rid19955983.denovo.15, whole genome shotgun sequence	109072..109714	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQOGL010000025.1 TPA_asm: Salmonella enterica strain U8A3 SAMN37050968-rid19955983.denovo.28, whole genome shotgun sequence	18873..19455																																																avrA	DAQOGL010000003.1	505370..506239	99.54	870	0						
GCA_033074595.1_PDT001954020.1_genomic.fna	Salmonella_enterica	0.52	403.412 KB	6	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28!,purE_28!,sucA_14,thrA_96*	1384*!,2036*!,2224*!,3841*!	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28!	purE	100	100	purE_28!	sucA	100	100	sucA_14	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQOGJ010000001.1 TPA_asm: Salmonella enterica strain F1C1 SAMN37050952-rid19956063.denovo.01, whole genome shotgun sequence	607018..607455	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQOGJ010000053.1 TPA_asm: Salmonella enterica strain F1C1 SAMN37050952-rid19956063.guided.12, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQOGJ010000012.1 TPA_asm: Salmonella enterica strain F1C1 SAMN37050952-rid19956063.denovo.14, whole genome shotgun sequence	109072..109714	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQOGJ010000023.1 TPA_asm: Salmonella enterica strain F1C1 SAMN37050952-rid19956063.denovo.26, whole genome shotgun sequence	18873..19455																																																avrA	DAQOGJ010000003.1	505370..506239	99.54	870	0						
GCA_033074615.1_PDT001954016.1_genomic.fna	Salmonella_enterica	0.52	342.271 KB	7	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28!,purE_28!,sucA_14,thrA_96*	1384!*,2036!*,2224!*,3841!*	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28!	purE	100	100	purE_28!	sucA	100	100	sucA_14	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQOGK010000001.1 TPA_asm: Salmonella enterica strain U5A2 SAMN37050964-rid19956023.denovo.01, whole genome shotgun sequence	607018..607455	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQOGK010000059.1 TPA_asm: Salmonella enterica strain U5A2 SAMN37050964-rid19956023.guided.13, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQOGK010000013.1 TPA_asm: Salmonella enterica strain U5A2 SAMN37050964-rid19956023.denovo.15, whole genome shotgun sequence	109072..109714	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQOGK010000027.1 TPA_asm: Salmonella enterica strain U5A2 SAMN37050964-rid19956023.denovo.30, whole genome shotgun sequence	18873..19455																																																avrA	DAQOGK010000002.1	401076..401945	99.54	870	0						
GCA_033074625.1_PDT001954022.1_genomic.fna	Salmonella_enterica	0.5212	261.041 KB	6	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQOGI010000001.1 TPA_asm: Salmonella enterica strain Salmonella enterica subsp. enterica serovar Muenchen SAMN37871446-rid19956083.denovo.01, whole genome shotgun sequence	823038..823475	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQOGI010000039.1 TPA_asm: Salmonella enterica strain Salmonella enterica subsp. enterica serovar Muenchen SAMN37871446-rid19956083.guided.25, whole genome shotgun sequence	23744..24181	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQOGI010000007.1	39554..40423	99.425	870	0						
GCA_033074655.1_PDT001954009.1_genomic.fna	Salmonella_enterica	0.5198	297.87 KB	7	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28,sucA_14,thrA_96*	Unknown	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28	sucA	100	100	sucA_14	thrA	99.8003992015968	100	thrA_96*	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQOGM010000001.1 TPA_asm: Salmonella enterica strain F6B2 SAMN37050955-rid19955953.denovo.01, whole genome shotgun sequence	144797..145234	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQOGM010000062.1 TPA_asm: Salmonella enterica strain F6B2 SAMN37050955-rid19955953.guided.22, whole genome shotgun sequence	9802..10239	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQOGM010000017.1 TPA_asm: Salmonella enterica strain F6B2 SAMN37050955-rid19955953.denovo.18, whole genome shotgun sequence	77765..78407	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQOGM010000029.1 TPA_asm: Salmonella enterica strain F6B2 SAMN37050955-rid19955953.denovo.32, whole genome shotgun sequence	18873..19455																																																avrA	DAQOGM010000002.1	401063..401932	99.54	870	0						
GCA_033074695.1_PDT001954006.1_genomic.fna	Salmonella_enterica	0.5197	331.312 KB	6	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28,sucA_14,thrA_96*	Unknown	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28	sucA	100	100	sucA_14	thrA	99.8003992015968	100	thrA_96*	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQOGN010000001.1 TPA_asm: Salmonella enterica strain F12B3 SAMN37050958-rid19955923.denovo.01, whole genome shotgun sequence	608596..609033	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQOGN010000058.1 TPA_asm: Salmonella enterica strain F12B3 SAMN37050958-rid19955923.guided.12, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQOGN010000014.1 TPA_asm: Salmonella enterica strain F12B3 SAMN37050958-rid19955923.denovo.15, whole genome shotgun sequence	109072..109714	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQOGN010000029.1 TPA_asm: Salmonella enterica strain F12B3 SAMN37050958-rid19955923.denovo.31, whole genome shotgun sequence	18873..19455																																																avrA	DAQOGN010000002.1	401033..401902	99.54	870	0						
GCA_033074735.1_PDT001954033.1_genomic.fna	Salmonella_enterica	0.5199	106.996 KB	14	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,qnrB19,qnrB19,tet(B),tet(B)	1	parC_p.T57S	7	Col(pHAD28),Col(pHAD28),Col156,Col440I,Col440I,IncFIB(AP001918),IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKDZ010000006.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.denovo.06, whole genome shotgun sequence	52346..52783	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKDZ010000062.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.denovo.65, whole genome shotgun sequence	4286..5122	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKDZ010000062.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.denovo.65, whole genome shotgun sequence	5122..5925	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOKDZ010000095.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.guided.45, whole genome shotgun sequence	16445..16882	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKDZ010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.guided.72, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKDZ010000096.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.guided.72, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	qnrB19	100	645/645	ABOKDZ010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.denovo.78, whole genome shotgun sequence	1841..2485	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOKDZ010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.guided.84, whole genome shotgun sequence	620..1264	Ciprofloxacin	EU432277	tet(B)	100	1206/1206	ABOKDZ010000066.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.denovo.69, whole genome shotgun sequence	2339..3544	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOKDZ010000097.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.guided.73, whole genome shotgun sequence	2336..3541	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOKDZ010000069.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.denovo.74, whole genome shotgun sequence	186..316	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOKDZ010000073.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.denovo.78, whole genome shotgun sequence	1185..1315		enterobacteriales	Col156	94.81	154 / 154	ABOKDZ010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.denovo.68, whole genome shotgun sequence	792..945		enterobacteriales	Col440I	93.64	110 / 114	ABOKDZ010000075.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.denovo.80, whole genome shotgun sequence	341..450		enterobacteriales	Col440I	91.23	114 / 114	ABOKDZ010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.guided.84, whole genome shotgun sequence	3..116		enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOKDZ010000061.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.denovo.64, whole genome shotgun sequence	1824..2505		enterobacteriales	IncFII	96.95	262 / 261	ABOKDZ010000062.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.denovo.65, whole genome shotgun sequence	3402..3663	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOKDZ010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.denovo.58, whole genome shotgun sequence	4554..4695	enterobacteriales	IncX1	100	373 / 373	ABOKDZ010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12325959 SAMN37993314-rid19956193.denovo.58, whole genome shotgun sequence	9570..9942	avrA	ABOKDZ010000037.1	39484..40353	99.655	870	0						
GCA_033074755.1_PDT001954037.1_genomic.fna	Salmonella_enterica	0.522	136.613 KB	12	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKDX010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325907 SAMN37993311-rid19956233.denovo.01, whole genome shotgun sequence	382054..382491	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKDX010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325907 SAMN37993311-rid19956233.denovo.15, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKDX010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325907 SAMN37993311-rid19956233.denovo.15, whole genome shotgun sequence	1219..2010	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOKDX010000093.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325907 SAMN37993311-rid19956233.guided.57, whole genome shotgun sequence	4767..5204	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKDX010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325907 SAMN37993311-rid19956233.guided.58, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKDX010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325907 SAMN37993311-rid19956233.guided.58, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	fosA3	100	417/417	ABOKDX010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325907 SAMN37993311-rid19956233.denovo.81, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABOKDX010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325907 SAMN37993311-rid19956233.guided.79, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABOKDX010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325907 SAMN37993311-rid19956233.denovo.15, whole genome shotgun sequence	2515..3354	Sulfamethoxazole	U12338	sul1	100	840/840	ABOKDX010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325907 SAMN37993311-rid19956233.guided.58, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOKDX010000015.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325907 SAMN37993311-rid19956233.denovo.15, whole genome shotgun sequence	15871..17070	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOKDX010000092.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325907 SAMN37993311-rid19956233.guided.52, whole genome shotgun sequence	5579..6778	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOKDX010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325907 SAMN37993311-rid19956233.denovo.59, whole genome shotgun sequence	6983..7542																																																						avrA	ABOKDX010000008.1	39349..40218	99.655	870	0						
GCA_033074775.1_PDT001954031.1_genomic.fna	Salmonella_enterica	0.5212	406.326 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKDY010000002.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325958 SAMN37993313-rid19956173.denovo.02, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKDY010000033.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325958 SAMN37993313-rid19956173.guided.22, whole genome shotgun sequence	333..770	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKDY010000021.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325958 SAMN37993313-rid19956173.denovo.24, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOKDY010000023.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325958 SAMN37993313-rid19956173.denovo.26, whole genome shotgun sequence	3423..3684																																																avrA	ABOKDY010000001.1	553312..554181	99.54	870	0						
GCA_033074795.1_PDT001954028.1_genomic.fna	Salmonella_enterica	0.5206	528.778 KB	3	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQOGP010000001.1 TPA_asm: Salmonella enterica strain Salmonella enterica subsp. enterica serovar Muenchen SAMN37939464-rid19956143.denovo.01, whole genome shotgun sequence	671550..671987	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQOGP010000031.1 TPA_asm: Salmonella enterica strain Salmonella enterica subsp. enterica serovar Muenchen SAMN37939464-rid19956143.guided.09, whole genome shotgun sequence	24977..25414	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQOGP010000002.1	407410..408279	99.425	870	0						
GCA_033074805.1_PDT001954027.1_genomic.fna	Salmonella_enterica	0.5212	273.709 KB	5	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQOGQ010000001.1 TPA_asm: Salmonella enterica strain Salmonella enterica subsp. enterica serovar Muenchen SAMN37939465-rid19956133.denovo.01, whole genome shotgun sequence	823038..823475	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQOGQ010000043.1 TPA_asm: Salmonella enterica strain Salmonella enterica subsp. enterica serovar Muenchen SAMN37939465-rid19956133.guided.27, whole genome shotgun sequence	10361..10798	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQOGQ010000002.1	407505..408374	99.425	870	0						
GCA_033074835.1_PDT001954026.1_genomic.fna	Salmonella_enterica	0.5209	548.49 KB	3	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQOGR010000001.1 TPA_asm: Salmonella enterica strain Salmonella enterica subsp. enterica serovar Muenchen SAMN37939466-rid19956123.denovo.01, whole genome shotgun sequence	671550..671987	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQOGR010000027.1 TPA_asm: Salmonella enterica strain Salmonella enterica subsp. enterica serovar Muenchen SAMN37939466-rid19956123.guided.15, whole genome shotgun sequence	44283..44720	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQOGR010000003.1	407607..408476	99.425	870	0						
GCA_033074855.1_PDT001954017.1_genomic.fna	Salmonella_enterica	0.52	374.935 KB	6	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28!,purE_28!,sucA_14,thrA_96*	1384*!,2036*!,2224*!,3841*!	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28!	purE	100	100	purE_28!	sucA	100	100	sucA_14	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQOGS010000001.1 TPA_asm: Salmonella enterica strain U5A1 SAMN37050963-rid19956033.denovo.01, whole genome shotgun sequence	607018..607455	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQOGS010000053.1 TPA_asm: Salmonella enterica strain U5A1 SAMN37050963-rid19956033.guided.12, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQOGS010000012.1 TPA_asm: Salmonella enterica strain U5A1 SAMN37050963-rid19956033.denovo.14, whole genome shotgun sequence	109072..109714	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQOGS010000024.1 TPA_asm: Salmonella enterica strain U5A1 SAMN37050963-rid19956033.denovo.27, whole genome shotgun sequence	18873..19455																																																avrA	DAQOGS010000003.1	505370..506239	99.54	870	0						
GCA_033074875.1_PDT001954015.1_genomic.fna	Salmonella_enterica	0.52	407.787 KB	5	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28!,purE_28!,sucA_14,thrA_96*	1384*!,2036*!,2224*!,3841*!	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28!	purE	100	100	purE_28!	sucA	100	100	sucA_14	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQOGT010000001.1 TPA_asm: Salmonella enterica strain U6A1 SAMN37050965-rid19956013.denovo.01, whole genome shotgun sequence	607018..607455	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQOGT010000053.1 TPA_asm: Salmonella enterica strain U6A1 SAMN37050965-rid19956013.guided.12, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQOGT010000013.1 TPA_asm: Salmonella enterica strain U6A1 SAMN37050965-rid19956013.denovo.15, whole genome shotgun sequence	109072..109714	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQOGT010000022.1 TPA_asm: Salmonella enterica strain U6A1 SAMN37050965-rid19956013.denovo.25, whole genome shotgun sequence	18873..19455																																																avrA	DAQOGT010000002.1	505370..506239	99.54	870	0						
GCA_033074895.1_PDT001954011.1_genomic.fna	Salmonella_enterica	0.52	374.923 KB	6	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28!,purE_28!,sucA_14,thrA_96*	1384!*,2036!*,2224!*,3841!*	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28!	purE	100	100	purE_28!	sucA	100	100	sucA_14	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQOGU010000001.1 TPA_asm: Salmonella enterica strain F3A1 SAMN37050953-rid19955973.denovo.01, whole genome shotgun sequence	607018..607455	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQOGU010000056.1 TPA_asm: Salmonella enterica strain F3A1 SAMN37050953-rid19955973.guided.12, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQOGU010000013.1 TPA_asm: Salmonella enterica strain F3A1 SAMN37050953-rid19955973.denovo.15, whole genome shotgun sequence	109072..109714	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQOGU010000025.1 TPA_asm: Salmonella enterica strain F3A1 SAMN37050953-rid19955973.denovo.28, whole genome shotgun sequence	18873..19455																																																avrA	DAQOGU010000003.1	401011..401880	99.54	870	0						
GCA_033074915.1_PDT001954010.1_genomic.fna	Salmonella_enterica	0.52	374.901 KB	6	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28!,purE_28!,sucA_14,thrA_96*	1384*!,2036*!,2224*!,3841*!	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28!	purE	100	100	purE_28!	sucA	100	100	sucA_14	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQOGW010000001.1 TPA_asm: Salmonella enterica strain F6A4 SAMN37050954-rid19955963.denovo.01, whole genome shotgun sequence	607018..607455	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQOGW010000053.1 TPA_asm: Salmonella enterica strain F6A4 SAMN37050954-rid19955963.guided.13, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQOGW010000013.1 TPA_asm: Salmonella enterica strain F6A4 SAMN37050954-rid19955963.denovo.15, whole genome shotgun sequence	109072..109714	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQOGW010000023.1 TPA_asm: Salmonella enterica strain F6A4 SAMN37050954-rid19955963.denovo.26, whole genome shotgun sequence	18873..19455																																																avrA	DAQOGW010000002.1	505370..506239	99.54	870	0						
GCA_033074935.1_PDT001954004.1_genomic.fna	Salmonella_enterica	0.5199	374.903 KB	6	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28,sucA_14,thrA_96*	Unknown	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28	sucA	100	100	sucA_14	thrA	99.8003992015968	100	thrA_96*	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQOGV010000003.1 TPA_asm: Salmonella enterica strain U1C2 SAMN37050960-rid19955903.denovo.03, whole genome shotgun sequence	145203..145640	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQOGV010000056.1 TPA_asm: Salmonella enterica strain U1C2 SAMN37050960-rid19955903.guided.21, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQOGV010000017.1 TPA_asm: Salmonella enterica strain U1C2 SAMN37050960-rid19955903.denovo.18, whole genome shotgun sequence	78455..79097	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQOGV010000027.1 TPA_asm: Salmonella enterica strain U1C2 SAMN37050960-rid19955903.denovo.30, whole genome shotgun sequence	18873..19455																																																avrA	DAQOGV010000001.1	505370..506239	99.54	870	0						
GCA_033074955.1_PDT001954002.1_genomic.fna	Salmonella_enterica	0.522	185.93 KB	8	aroC_10,dnaN_7,hemD_370,hisD_9,purE_5,sucA_9,thrA_2	2076	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_370	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKEA010000001.1 Salmonella enterica strain PNUSAS395693 SAMN37992586-rid19955883.denovo.01, whole genome shotgun sequence	233303..233740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKEA010000049.1 Salmonella enterica strain PNUSAS395693 SAMN37992586-rid19955883.guided.30, whole genome shotgun sequence	33942..34379	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKEA010000002.1	209258..210126	99.77	870	0						
GCA_033074975.1_PDT001954018.1_genomic.fna	Salmonella_enterica	0.5194	407.787 KB	5	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28,sucA_14,thrA_96*	Unknown	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28	sucA	100	100	sucA_14	thrA	99.8003992015968	100	thrA_96*	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQOGZ010000001.1 TPA_asm: Salmonella enterica strain U2A3 SAMN37050962-rid19956043.denovo.01, whole genome shotgun sequence	610722..611159	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQOGZ010000053.1 TPA_asm: Salmonella enterica strain U2A3 SAMN37050962-rid19956043.guided.11, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQOGZ010000013.1 TPA_asm: Salmonella enterica strain U2A3 SAMN37050962-rid19956043.denovo.14, whole genome shotgun sequence	109072..109714	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQOGZ010000024.1 TPA_asm: Salmonella enterica strain U2A3 SAMN37050962-rid19956043.denovo.27, whole genome shotgun sequence	18873..19455																																																avrA	DAQOGZ010000003.1	505370..506239	99.54	870	0						
GCA_033074995.1_PDT001954008.1_genomic.fna	Salmonella_enterica	0.52	331.309 KB	6	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28!,purE_28!,sucA_14,thrA_96*	1384*!,2036*!,2224*!,3841*!	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28!	purE	100	100	purE_28!	sucA	100	100	sucA_14	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQOHA010000001.1 TPA_asm: Salmonella enterica strain F7A1 SAMN37050956-rid19955943.denovo.01, whole genome shotgun sequence	520087..520524	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQOHA010000056.1 TPA_asm: Salmonella enterica strain F7A1 SAMN37050956-rid19955943.guided.12, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQOHA010000013.1 TPA_asm: Salmonella enterica strain F7A1 SAMN37050956-rid19955943.denovo.15, whole genome shotgun sequence	109072..109714	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQOHA010000028.1 TPA_asm: Salmonella enterica strain F7A1 SAMN37050956-rid19955943.denovo.31, whole genome shotgun sequence	18873..19455																																																avrA	DAQOHA010000002.1	505370..506239	99.54	870	0						
GCA_033075015.1_PDT001954019.1_genomic.fna	Salmonella_enterica	0.52	342.271 KB	5	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28!,purE_28!,sucA_14,thrA_96*	1384*!,2036*!,2224*!,3841*!	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28!	purE	100	100	purE_28!	sucA	100	100	sucA_14	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQOGY010000001.1 TPA_asm: Salmonella enterica strain U2A1 SAMN37050961-rid19956053.denovo.01, whole genome shotgun sequence	520087..520524	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQOGY010000058.1 TPA_asm: Salmonella enterica strain U2A1 SAMN37050961-rid19956053.guided.12, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQOGY010000013.1 TPA_asm: Salmonella enterica strain U2A1 SAMN37050961-rid19956053.denovo.15, whole genome shotgun sequence	109072..109714	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQOGY010000025.1 TPA_asm: Salmonella enterica strain U2A1 SAMN37050961-rid19956053.denovo.28, whole genome shotgun sequence	18873..19455																																																avrA	DAQOGY010000002.1	505370..506239	99.54	870	0						
GCA_033075035.1_PDT001954021.1_genomic.fna	Salmonella_enterica	0.52	342.271 KB	6	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28!,purE_28!,sucA_14,thrA_96*	1384*!,2036*!,2224*!,3841*!	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28!	purE	100	100	purE_28!	sucA	100	100	sucA_14	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQOGX010000001.1 TPA_asm: Salmonella enterica strain F1A1 SAMN37050951-rid19956073.denovo.01, whole genome shotgun sequence	608596..609033	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQOGX010000054.1 TPA_asm: Salmonella enterica strain F1A1 SAMN37050951-rid19956073.guided.13, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQOGX010000014.1 TPA_asm: Salmonella enterica strain F1A1 SAMN37050951-rid19956073.denovo.16, whole genome shotgun sequence	109072..109714	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQOGX010000026.1 TPA_asm: Salmonella enterica strain F1A1 SAMN37050951-rid19956073.denovo.29, whole genome shotgun sequence	18873..19455																																																avrA	DAQOGX010000002.1	505370..506239	99.54	870	0						
GCA_033075055.1_PDT001954007.1_genomic.fna	Salmonella_enterica	0.52	342.271 KB	5	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28!,purE_28!,sucA_14,thrA_96*	1384*!,2036*!,2224*!,3841*!	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28!	purE	100	100	purE_28!	sucA	100	100	sucA_14	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQOHD010000001.1 TPA_asm: Salmonella enterica strain F12B1 SAMN37050957-rid19955933.denovo.01, whole genome shotgun sequence	520087..520524	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQOHD010000053.1 TPA_asm: Salmonella enterica strain F12B1 SAMN37050957-rid19955933.guided.12, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQOHD010000013.1 TPA_asm: Salmonella enterica strain F12B1 SAMN37050957-rid19955933.denovo.15, whole genome shotgun sequence	109072..109714	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQOHD010000023.1 TPA_asm: Salmonella enterica strain F12B1 SAMN37050957-rid19955933.denovo.26, whole genome shotgun sequence	18873..19455																																																avrA	DAQOHD010000002.1	505370..506239	99.54	870	0						
GCA_033077195.1_PDT001954025.1_genomic.fna	Salmonella_enterica	0.5207	528.778 KB	3	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQOLE010000001.1 TPA_asm: Salmonella enterica strain Salmonella enterica subsp. enterica serovar Muenchen SAMN37939467-rid19956113.denovo.01, whole genome shotgun sequence	671550..671987	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQOLE010000023.1 TPA_asm: Salmonella enterica strain Salmonella enterica subsp. enterica serovar Muenchen SAMN37939467-rid19956113.guided.10, whole genome shotgun sequence	44283..44720	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQOLE010000002.1	407449..408318	99.425	870	0						
GCA_033078195.1_PDT001954013.1_genomic.fna	Salmonella_enterica	0.52	374.899 KB	6	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28!,purE_28!,sucA_14,thrA_96*	1384*!,2036*!,2224*!,3841*!	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28!	purE	100	100	purE_28!	sucA	100	100	sucA_14	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQONE010000001.1 TPA_asm: Salmonella enterica strain U6B1 SAMN37050967-rid19955993.denovo.01, whole genome shotgun sequence	608596..609033	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQONE010000052.1 TPA_asm: Salmonella enterica strain U6B1 SAMN37050967-rid19955993.guided.12, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQONE010000013.1 TPA_asm: Salmonella enterica strain U6B1 SAMN37050967-rid19955993.denovo.15, whole genome shotgun sequence	109072..109714	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQONE010000023.1 TPA_asm: Salmonella enterica strain U6B1 SAMN37050967-rid19955993.denovo.26, whole genome shotgun sequence	18873..19455																																																avrA	DAQONE010000002.1	505370..506239	99.54	870	0						
GCA_033079195.1_PDT001954023.1_genomic.fna	Salmonella_enterica	0.5211	273.452 KB	5	aroC_41,dnaN_42,hemD_43,hisD_12,purE_9,sucA_12,thrA_2	82	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	DAQOPA010000001.1 TPA_asm: Salmonella enterica strain Salmonella enterica subsp. enterica serovar Muenchen SAMN37871445-rid19956093.denovo.01, whole genome shotgun sequence	823038..823475	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	DAQOPA010000035.1 TPA_asm: Salmonella enterica strain Salmonella enterica subsp. enterica serovar Muenchen SAMN37871445-rid19956093.guided.21, whole genome shotgun sequence	8004..8441	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQOPA010000006.1	39355..40224	99.425	870	0						
GCA_033082335.1_PDT001954005.1_genomic.fna	Salmonella_enterica	0.52	342.271 KB	7	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28!,purE_28!,sucA_14,thrA_96*	1384!*,2036!*,2224!*,3841!*	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28!	purE	100	100	purE_28!	sucA	100	100	sucA_14	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQOVA010000001.1 TPA_asm: Salmonella enterica strain U1C1 SAMN37050959-rid19955913.denovo.01, whole genome shotgun sequence	608596..609033	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQOVA010000056.1 TPA_asm: Salmonella enterica strain U1C1 SAMN37050959-rid19955913.guided.13, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQOVA010000013.1 TPA_asm: Salmonella enterica strain U1C1 SAMN37050959-rid19955913.denovo.15, whole genome shotgun sequence	109072..109714	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQOVA010000028.1 TPA_asm: Salmonella enterica strain U1C1 SAMN37050959-rid19955913.denovo.31, whole genome shotgun sequence	18873..19455																																																avrA	DAQOVA010000002.1	401023..401892	99.54	870	0						
GCA_033082415.1_PDT001954000.1_genomic.fna	Salmonella_enterica	0.5223	285.249 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOKEF010000001.1 Salmonella enterica strain PNUSAS395697 SAMN37992590-rid19955863.denovo.01, whole genome shotgun sequence	750296..750733	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOKEF010000035.1 Salmonella enterica strain PNUSAS395697 SAMN37992590-rid19955863.guided.26, whole genome shotgun sequence	5121..5558	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(S)	93.16	643 / 643	ABOKEF010000019.1 Salmonella enterica strain PNUSAS395697 SAMN37992590-rid19955863.denovo.19, whole genome shotgun sequence	45760..46402	enterobacteriales	IncFII(S)	97.34	263 / 262	ABOKEF010000019.1 Salmonella enterica strain PNUSAS395697 SAMN37992590-rid19955863.denovo.19, whole genome shotgun sequence	8613..8872																																																avrA	ABOKEF010000007.1	94166..95034	99.425	870	0						
GCA_033086075.1_PDT001954356.1_genomic.fna	Salmonella_enterica	0.5209	362.968 KB	6	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,tet(A),tet(A)	0		4	ColRNAI,IncFII(S),IncN,IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQPBU010000003.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.denovo.03, whole genome shotgun sequence	155747..156184	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQPBU010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.denovo.24, whole genome shotgun sequence	10608..11444	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	DAQPBU010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.denovo.24, whole genome shotgun sequence	11444..12246	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	DAQPBU010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.denovo.24, whole genome shotgun sequence	11444..12247	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	DAQPBU010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.denovo.24, whole genome shotgun sequence	11444..12247	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	DAQPBU010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.denovo.24, whole genome shotgun sequence	11444..12247	Streptomycin	AF321550	aph(6)-Id	100	837/837	DAQPBU010000043.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.guided.26, whole genome shotgun sequence	6511..7347	Streptomycin	M28829	aph(3'')-Ib	99.88	803/804	DAQPBU010000043.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.guided.26, whole genome shotgun sequence	5709..6511	Streptomycin	AF024602	aph(3'')-Ib	99.75	804/804	DAQPBU010000043.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.guided.26, whole genome shotgun sequence	5708..6511	Streptomycin	AF321551	aph(3'')-Ib	99.75	804/804	DAQPBU010000043.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.guided.26, whole genome shotgun sequence	5708..6511	Streptomycin	AF313472	aph(3'')-Ib	99.75	804/804	DAQPBU010000043.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.guided.26, whole genome shotgun sequence	5708..6511	Streptomycin	AF321550	aac(6')-Iaa	98.63	438/438	DAQPBU010000047.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.guided.36, whole genome shotgun sequence	274..711	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQPBU010000028.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.denovo.32, whole genome shotgun sequence	3904..4764	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQPBU010000045.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.guided.30, whole genome shotgun sequence	3943..4803	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(A)	100	1200/1200	DAQPBU010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.denovo.24, whole genome shotgun sequence	15934..17133	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQPBU010000043.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.guided.26, whole genome shotgun sequence	822..2021	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																												enterobacteriales	ColRNAI	90.08	131 / 130	DAQPBU010000030.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.denovo.34, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQPBU010000017.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.denovo.17, whole genome shotgun sequence	66025..66284		enterobacteriales	IncN	100	514 / 514	DAQPBU010000026.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.denovo.28, whole genome shotgun sequence	615..1128		enterobacteriales	IncX1	98.66	374 / 374	DAQPBU010000017.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759810-rid19959363.denovo.17, whole genome shotgun sequence	27290..27663																																		avrA	DAQPBU010000001.1	504282..505150	99.655	870	0						
GCA_033086095.1_PDT001954357.1_genomic.fna	Salmonella_enterica	0.5206	405.765 KB	4	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQPBV010000001.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759864-rid19959373.denovo.01, whole genome shotgun sequence	799509..799946	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQPBV010000036.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759864-rid19959373.guided.17, whole genome shotgun sequence	15527..15964	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQPBV010000024.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759864-rid19959373.denovo.26, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQPBV010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759864-rid19959373.denovo.13, whole genome shotgun sequence	63428..63687		enterobacteriales	IncX1	98.66	374 / 374	DAQPBV010000013.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759864-rid19959373.denovo.13, whole genome shotgun sequence	24684..25057																																									avrA	DAQPBV010000002.1	504306..505174	99.655	870	0						
GCA_033086115.1_PDT001954355.1_genomic.fna	Salmonella_enterica	0.521	244.9 KB	8	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQPBW010000002.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759745-rid19959353.denovo.02, whole genome shotgun sequence	140782..141219	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.21	382/438	DAQPBW010000061.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759745-rid19959353.guided.51, whole genome shotgun sequence	1..382	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQPBW010000044.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759745-rid19959353.denovo.45, whole genome shotgun sequence	1293..1423	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQPBW010000019.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759745-rid19959353.denovo.19, whole genome shotgun sequence	63446..63705		enterobacteriales	IncX1	98.66	374 / 374	DAQPBW010000019.1 TPA_asm: Salmonella enterica subsp. enterica strain ST10 isolate S. Dublin SAMEA112759745-rid19959353.denovo.19, whole genome shotgun sequence	24684..25057																																									avrA	DAQPBW010000006.1	173652..174520	99.655	870	0						
GCA_033086135.1_PDT001954352.1_genomic.fna	Salmonella_enterica	0.5212	180.937 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKEM010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325987 SAMN37998465-rid19959323.denovo.01, whole genome shotgun sequence	384203..384640	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKEM010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325987 SAMN37998465-rid19959323.denovo.33, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKEM010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325987 SAMN37998465-rid19959323.denovo.33, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOKEM010000071.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325987 SAMN37998465-rid19959323.guided.43, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKEM010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325987 SAMN37998465-rid19959323.guided.53, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKEM010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325987 SAMN37998465-rid19959323.guided.53, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOKEM010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325987 SAMN37998465-rid19959323.denovo.33, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOKEM010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325987 SAMN37998465-rid19959323.guided.53, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOKEM010000032.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325987 SAMN37998465-rid19959323.denovo.33, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOKEM010000069.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325987 SAMN37998465-rid19959323.guided.37, whole genome shotgun sequence	4983..6182	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOKEM010000036.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12325987 SAMN37998465-rid19959323.denovo.38, whole genome shotgun sequence	9109..9668																																																						avrA	ABOKEM010000002.1	95072..95941	99.655	870	0						
GCA_033086155.1_PDT001954354.1_genomic.fna	Salmonella_enterica	0.5207	285.732 KB	6	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	4	aac(6')-Iaa,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	2	Col(pHAD28),IncQ1,IncQ1	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKEJ010000001.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325988 SAMN37998468-rid19959343.denovo.01, whole genome shotgun sequence	799067..799504	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	671/804	ABOKEJ010000033.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325988 SAMN37998468-rid19959343.denovo.35, whole genome shotgun sequence	8803..9473	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOKEJ010000051.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325988 SAMN37998468-rid19959343.guided.11, whole genome shotgun sequence	15039..15476	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	695/804	ABOKEJ010000052.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325988 SAMN37998468-rid19959343.guided.34, whole genome shotgun sequence	7879..8573	Streptomycin	AF321551	sul2	100	816/816	ABOKEJ010000033.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325988 SAMN37998468-rid19959343.denovo.35, whole genome shotgun sequence	85..900	Sulfamethoxazole	FN995456	sul2	100	816/816	ABOKEJ010000052.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325988 SAMN37998468-rid19959343.guided.34, whole genome shotgun sequence	7003..7818	Sulfamethoxazole	FN995456	tet(A)	100	1200/1200	ABOKEJ010000033.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325988 SAMN37998468-rid19959343.denovo.35, whole genome shotgun sequence	6703..7902	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOKEJ010000052.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325988 SAMN37998468-rid19959343.guided.34, whole genome shotgun sequence	1..1200	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOKEJ010000040.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325988 SAMN37998468-rid19959343.denovo.44, whole genome shotgun sequence	1708..1838	enterobacteriales	IncQ1	100	796 / 796	ABOKEJ010000033.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325988 SAMN37998468-rid19959343.denovo.35, whole genome shotgun sequence	2240..3035		enterobacteriales	IncQ1	100	796 / 796	ABOKEJ010000052.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325988 SAMN37998468-rid19959343.guided.34, whole genome shotgun sequence	4868..5663																																									avrA	ABOKEJ010000005.1	99769..100638	98.966	870	0						
GCA_033086175.1_PDT001954351.1_genomic.fna	Salmonella_enterica	0.5206	227.742 KB	7	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKEK010000001.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325986 SAMN37998464-rid19959313.denovo.01, whole genome shotgun sequence	110416..110853	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKEK010000051.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325986 SAMN37998464-rid19959313.guided.33, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOKEK010000039.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12325986 SAMN37998464-rid19959313.denovo.42, whole genome shotgun sequence	1708..1838																																																						avrA	ABOKEK010000004.1	99423..100292	98.966	870	0						
GCA_033086195.1_PDT001954350.1_genomic.fna	Salmonella_enterica	0.5212	309.651 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKEL010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325985 SAMN37998463-rid19958743.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKEL010000039.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325985 SAMN37998463-rid19958743.guided.19, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	98.96	193 / 193	ABOKEL010000030.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325985 SAMN37998463-rid19958743.denovo.33, whole genome shotgun sequence	805..997	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKEL010000024.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325985 SAMN37998463-rid19958743.denovo.26, whole genome shotgun sequence	6831..7473		enterobacteriales	IncFII(S)	100	262 / 262	ABOKEL010000025.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS12325985 SAMN37998463-rid19958743.denovo.28, whole genome shotgun sequence	3403..3664																																									avrA	ABOKEL010000002.1	553496..554365	99.54	870	0						
GCA_033086215.1_PDT001954349.1_genomic.fna	Salmonella_enterica	0.5202	385.585 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_706,thrA_4	4034	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_706	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKEQ010000002.1 Salmonella enterica strain PNUSAS395784 SAMN37997819-rid19959303.denovo.02, whole genome shotgun sequence	149462..149899	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKEQ010000026.1 Salmonella enterica strain PNUSAS395784 SAMN37997819-rid19959303.guided.13, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033086235.1_PDT001954348.1_genomic.fna	Salmonella_enterica	0.5212	531.709 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKEP010000001.1 Salmonella enterica strain PNUSAS395785 SAMN37997818-rid19959293.denovo.01, whole genome shotgun sequence	145242..145679	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKEP010000028.1 Salmonella enterica strain PNUSAS395785 SAMN37997818-rid19959293.guided.17, whole genome shotgun sequence	24487..24924	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKEP010000003.1	401377..402246	99.655	870	0						
GCA_033086255.1_PDT001954347.1_genomic.fna	Salmonella_enterica	0.5231	382.208 KB	5	aroC_111,dnaN_109,hemD_17,hisD_149,purE_41,sucA_13,thrA_23	451	28:y:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_111	dnaN	100	100	dnaN_109	hemD	100	100	hemD_17	hisD	100	100	hisD_149	purE	100	100	purE_41	sucA	100	100	sucA_13	thrA	100	100	thrA_23	28	y	1,7	Salmonella enterica subspecies enterica (subspecies I)	Pomona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKEO010000007.1 Salmonella enterica strain PNUSAS395774 SAMN37997817-rid19959283.denovo.07, whole genome shotgun sequence	152212..152649	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKEO010000024.1 Salmonella enterica strain PNUSAS395774 SAMN37997817-rid19959283.guided.17, whole genome shotgun sequence	43623..44060	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKEO010000001.1	140457..141326	99.54	870	0						
GCA_033086295.1_PDT001954345.1_genomic.fna	Salmonella_enterica	0.5208	363.638 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKER010000001.1 Salmonella enterica strain PNUSAS395773 SAMN37997816-rid19958733.denovo.01, whole genome shotgun sequence	477346..477783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKER010000036.1 Salmonella enterica strain PNUSAS395773 SAMN37997816-rid19958733.guided.28, whole genome shotgun sequence	12706..13143	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKER010000019.1	39479..40347	99.195	870	0						
GCA_033086435.1_PDT001954553.1_genomic.fna	Salmonella_enterica	0.5223	76.955 KB	20	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPBX010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_01520_3SR2 isolate VISAVET_ZTA14_01520_3SR2 SAMEA112356863-rid19960713.denovo.017, whole genome shotgun sequence	16034..16471	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPBX010000124.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_01520_3SR2 isolate VISAVET_ZTA14_01520_3SR2 SAMEA112356863-rid19960713.guided.101, whole genome shotgun sequence	2159..2596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPBX010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_01520_3SR2 isolate VISAVET_ZTA14_01520_3SR2 SAMEA112356863-rid19960713.denovo.072, whole genome shotgun sequence	9049..9691	enterobacteriales	IncFII(S)	100	262 / 262	DAQPBX010000088.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_01520_3SR2 isolate VISAVET_ZTA14_01520_3SR2 SAMEA112356863-rid19960713.denovo.088, whole genome shotgun sequence	3414..3675																																																avrA	DAQPBX010000001.1	149558..150427	99.54	870	0						
GCA_033086515.1_PDT001954336.1_genomic.fna	Salmonella_enterica	0.5217	249.63 KB	7	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOKFB010000002.1 Salmonella enterica strain PNUSAS395875 SAMN37997778-rid19959193.denovo.02, whole genome shotgun sequence	346928..347365	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOKFB010000036.1 Salmonella enterica strain PNUSAS395875 SAMN37997778-rid19959193.guided.27, whole genome shotgun sequence	5677..6114	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKFB010000011.1	39537..40406	99.54	870	0						
GCA_033086535.1_PDT001954334.1_genomic.fna	Salmonella_enterica	0.5113	302.19 KB	7	aroC_88,dnaN_26,hemD_30,hisD_84,purE_21,sucA_92,thrA_80	1845	61:c:z35	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_88	dnaN	100	100	dnaN_26	hemD	100	100	hemD_30	hisD	100	100	hisD_84	purE	100	100	purE_21	sucA	100	100	sucA_92	thrA	100	100	thrA_80	61	c	z35	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 61:c:z35		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKFD010000010.1 Salmonella enterica strain PNUSAS395872 SAMN37997784-rid19959183.denovo.10, whole genome shotgun sequence	112509..112946	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKFD010000049.1 Salmonella enterica strain PNUSAS395872 SAMN37997784-rid19959183.guided.28, whole genome shotgun sequence	15725..16162	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKFD010000001.1	38510..39379	96.552	870	0						
GCA_033086555.1_PDT001954335.1_genomic.fna	Salmonella_enterica	0.5217	219.3 KB	9	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKFC010000007.1 Salmonella enterica strain PNUSAS395874 SAMN37997782-rid19958713.denovo.07, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKFC010000054.1 Salmonella enterica strain PNUSAS395874 SAMN37997782-rid19958713.guided.39, whole genome shotgun sequence	7130..7567	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKFC010000001.1	39625..40493	99.31	870	0						
GCA_033086575.1_PDT001954332.1_genomic.fna	Salmonella_enterica	0.5217	191.425 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKFE010000001.1 Salmonella enterica strain PNUSAS395870 SAMN37997779-rid19959163.denovo.01, whole genome shotgun sequence	145243..145680	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKFE010000052.1 Salmonella enterica strain PNUSAS395870 SAMN37997779-rid19959163.guided.35, whole genome shotgun sequence	11932..12369	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKFE010000006.1	39596..40464	99.77	870	0						
GCA_033086595.1_PDT001954333.1_genomic.fna	Salmonella_enterica	0.5212	283.351 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKFG010000003.1 Salmonella enterica strain PNUSAS395869 SAMN37997780-rid19959173.denovo.03, whole genome shotgun sequence	162564..163001	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKFG010000036.1 Salmonella enterica strain PNUSAS395869 SAMN37997780-rid19959173.guided.23, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKFG010000021.1 Salmonella enterica strain PNUSAS395869 SAMN37997780-rid19959173.denovo.21, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOKFG010000021.1 Salmonella enterica strain PNUSAS395869 SAMN37997780-rid19959173.denovo.21, whole genome shotgun sequence	5032..5293																																																avrA	ABOKFG010000014.1	39351..40220	99.54	870	0						
GCA_033086615.1_PDT001954331.1_genomic.fna	Salmonella_enterica	0.5225	223.503 KB	7	aroC_301,dnaN_272,hemD_48,hisD_16,purE_40,sucA_13,thrA_3	864	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_301	dnaN	100	100	dnaN_272	hemD	100	100	hemD_48	hisD	100	100	hisD_16	purE	100	100	purE_40	sucA	100	100	sucA_13	thrA	100	100	thrA_3	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOKFF010000003.1 Salmonella enterica strain PNUSAS395868 SAMN37997781-rid19959153.denovo.03, whole genome shotgun sequence	169871..170308	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOKFF010000035.1 Salmonella enterica strain PNUSAS395868 SAMN37997781-rid19959153.guided.30, whole genome shotgun sequence	24..461	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033086635.1_PDT001954330.1_genomic.fna	Salmonella_enterica	0.5211	195.924 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	6	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,floR,floR,sul1,tet(G),tet(G)	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKFH010000001.1 Salmonella enterica strain PNUSAS395873 SAMN37997783-rid19958703.denovo.01, whole genome shotgun sequence	144771..145208	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOKFH010000056.1 Salmonella enterica strain PNUSAS395873 SAMN37997783-rid19958703.denovo.62, whole genome shotgun sequence	50..829	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	100	438/438	ABOKFH010000067.1 Salmonella enterica strain PNUSAS395873 SAMN37997783-rid19958703.guided.31, whole genome shotgun sequence	20123..20560	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOKFH010000073.1 Salmonella enterica strain PNUSAS395873 SAMN37997783-rid19958703.guided.63, whole genome shotgun sequence	58..837	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOKFH010000043.1 Salmonella enterica strain PNUSAS395873 SAMN37997783-rid19958703.denovo.44, whole genome shotgun sequence	8411..9277	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOKFH010000072.1 Salmonella enterica strain PNUSAS395873 SAMN37997783-rid19958703.guided.61, whole genome shotgun sequence	106..972	Ampicillin, Amoxicillin, Piperacillin	M69058	floR	100	1215/1215	ABOKFH010000043.1 Salmonella enterica strain PNUSAS395873 SAMN37997783-rid19958703.denovo.44, whole genome shotgun sequence	5451..6665	Chloramphenicol, Florfenicol	AF118107	floR	100	1215/1215	ABOKFH010000068.1 Salmonella enterica strain PNUSAS395873 SAMN37997783-rid19958703.guided.45, whole genome shotgun sequence	700..1914	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOKFH010000071.1 Salmonella enterica strain PNUSAS395873 SAMN37997783-rid19958703.guided.57, whole genome shotgun sequence	455..1294	Sulfamethoxazole	U12338	tet(G)	100	1176/1176	ABOKFH010000043.1 Salmonella enterica strain PNUSAS395873 SAMN37997783-rid19958703.denovo.44, whole genome shotgun sequence	3339..4514	Doxycycline, Tetracycline	AF133140	tet(G)	100	1176/1176	ABOKFH010000068.1 Salmonella enterica strain PNUSAS395873 SAMN37997783-rid19958703.guided.45, whole genome shotgun sequence	2851..4026	Doxycycline, Tetracycline	AF133140																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	IncFIB(S)	100	643 / 643	ABOKFH010000018.1 Salmonella enterica strain PNUSAS395873 SAMN37997783-rid19958703.denovo.18, whole genome shotgun sequence	36050..36692	enterobacteriales	IncFII(S)	100	262 / 262	ABOKFH010000018.1 Salmonella enterica strain PNUSAS395873 SAMN37997783-rid19958703.denovo.18, whole genome shotgun sequence	51777..52038																																																avrA	ABOKFH010000002.1	39474..40343	99.885	870	0						
GCA_033086655.1_PDT001954328.1_genomic.fna	Salmonella_enterica	0.5226	386.934 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKFJ010000001.1 Salmonella enterica strain PNUSAS395769 SAMN37997768-rid19959133.denovo.01, whole genome shotgun sequence	536687..537124	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKFJ010000032.1 Salmonella enterica strain PNUSAS395769 SAMN37997768-rid19959133.guided.15, whole genome shotgun sequence	36733..37170	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKFJ010000003.1	149740..150609	99.655	870	0						
GCA_033086675.1_PDT001954329.1_genomic.fna	Salmonella_enterica	0.5212	350.78 KB	6	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncI2(Delta),IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKFI010000001.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.denovo.01, whole genome shotgun sequence	477991..478428	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOKFI010000034.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.denovo.39, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOKFI010000048.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.guided.32, whole genome shotgun sequence	2292..2729	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOKFI010000050.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.guided.38, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOKFI010000034.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.denovo.39, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOKFI010000050.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.guided.38, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOKFI010000032.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.denovo.36, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOKFI010000049.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.guided.35, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOKFI010000031.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.denovo.34, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOKFI010000051.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.guided.41, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOKFI010000034.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.denovo.39, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOKFI010000050.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.guided.38, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOKFI010000037.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.denovo.45, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOKFI010000053.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.guided.44, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOKFI010000031.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.denovo.34, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOKFI010000052.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.guided.42, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOKFI010000031.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.denovo.34, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOKFI010000052.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.guided.42, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	98.14	322 / 316	ABOKFI010000020.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.denovo.20, whole genome shotgun sequence	26222..26543	enterobacteriales	IncR	100	251 / 251	ABOKFI010000028.1 Salmonella enterica strain PNUSAS395871 SAMN37997785-rid19959143.denovo.28, whole genome shotgun sequence	4434..4684																																																avrA	ABOKFI010000006.1	39475..40344	99.77	870	0						
GCA_033086715.1_PDT001954325.1_genomic.fna	Salmonella_enterica	0.5218	397.467 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKFL010000001.1 Salmonella enterica strain PNUSAS395763 SAMN37997766-rid19959103.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKFL010000029.1 Salmonella enterica strain PNUSAS395763 SAMN37997766-rid19959103.guided.12, whole genome shotgun sequence	13834..14271	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	98.59	142 / 142	ABOKFL010000013.1 Salmonella enterica strain PNUSAS395763 SAMN37997766-rid19959103.denovo.14, whole genome shotgun sequence	69806..69947																																																						avrA	ABOKFL010000002.1	149740..150609	99.655	870	0						
GCA_033086755.1_PDT001954324.1_genomic.fna	Salmonella_enterica	0.5209	480.935 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKFM010000001.1 Salmonella enterica strain PNUSAS395766 SAMN37997754-rid19959093.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKFM010000023.1 Salmonella enterica strain PNUSAS395766 SAMN37997754-rid19959093.guided.14, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKFM010000015.1 Salmonella enterica strain PNUSAS395766 SAMN37997754-rid19959093.denovo.17, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOKFM010000015.1 Salmonella enterica strain PNUSAS395766 SAMN37997754-rid19959093.denovo.17, whole genome shotgun sequence	4416..4677																																																avrA	ABOKFM010000002.1	553077..553946	99.54	870	0						
GCA_033086795.1_PDT001954321.1_genomic.fna	Salmonella_enterica	0.5227	415.939 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKFP010000001.1 Salmonella enterica strain PNUSAS395767 SAMN37997689-rid19959063.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKFP010000028.1 Salmonella enterica strain PNUSAS395767 SAMN37997689-rid19959063.guided.19, whole genome shotgun sequence	7604..8041	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKFP010000004.1	39524..40393	99.655	870	0						
GCA_033086815.1_PDT001954315.1_genomic.fna	Salmonella_enterica	0.5217	593.938 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKFQ010000001.1 Salmonella enterica strain PNUSAS395772 SAMN37997684-rid19959013.denovo.01, whole genome shotgun sequence	132782..133219	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKFQ010000032.1 Salmonella enterica strain PNUSAS395772 SAMN37997684-rid19959013.guided.16, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKFQ010000004.1	553587..554456	99.655	870	0						
GCA_033086855.1_PDT001954279.1_genomic.fna	Salmonella_enterica	0.5207	377.364 KB	4	aroC_10,dnaN_7,hemD_12,hisD_9,purE_70,sucA_9,thrA_2	213	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_70	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKFR010000002.1 Salmonella enterica strain PNUSAS395768 SAMN37997677-rid19957843.denovo.02, whole genome shotgun sequence	673533..673970	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKFR010000029.1 Salmonella enterica strain PNUSAS395768 SAMN37997677-rid19957843.guided.10, whole genome shotgun sequence	40341..40778	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKFR010000001.1	402515..403384	99.885	870	0						
GCA_033087015.1_PDT001954256.1_genomic.fna	Salmonella_enterica	0.5206	582.747 KB	2	aroC_41,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	112	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_41	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKGB010000001.1 Salmonella enterica strain PNUSAS395822 SAMN37997500-rid19957723.denovo.01, whole genome shotgun sequence	671406..671843	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKGB010000021.1 Salmonella enterica strain PNUSAS395822 SAMN37997500-rid19957723.guided.15, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKGB010000002.1	407414..408282	99.31	870	0						
GCA_033087055.1_PDT001954253.1_genomic.fna	Salmonella_enterica	0.5226	407.388 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKGA010000001.1 Salmonella enterica strain PNUSAS395824 SAMN37997503-rid19958483.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKGA010000027.1 Salmonella enterica strain PNUSAS395824 SAMN37997503-rid19958483.guided.14, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKGA010000002.1	149551..150420	99.655	870	0						
GCA_033087075.1_PDT001954252.1_genomic.fna	Salmonella_enterica	0.5197	280.79 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncL	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKGC010000001.1 Salmonella enterica strain PNUSAS395823 SAMN37997504-rid19958473.denovo.01, whole genome shotgun sequence	477368..477805	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKGC010000039.1 Salmonella enterica strain PNUSAS395823 SAMN37997504-rid19958473.guided.11, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncL	97.14	664 / 661	ABOKGC010000022.1 Salmonella enterica strain PNUSAS395823 SAMN37997504-rid19958473.denovo.23, whole genome shotgun sequence	16087..16749																																																						avrA	ABOKGC010000009.1	140075..140943	99.195	870	0						
GCA_033087095.1_PDT001954251.1_genomic.fna	Salmonella_enterica	0.5219	849.228 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKFZ010000001.1 Salmonella enterica strain PNUSAS395825 SAMN37997505-rid19957693.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKFZ010000016.1 Salmonella enterica strain PNUSAS395825 SAMN37997505-rid19957693.guided.13, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKFZ010000004.1	561391..562261	99.656	871	0						
GCA_033087115.1_PDT001954249.1_genomic.fna	Salmonella_enterica	0.5209	680.305 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKGD010000001.1 Salmonella enterica strain PNUSAS395819 SAMN37997470-rid19957683.denovo.01, whole genome shotgun sequence	510328..510765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKGD010000027.1 Salmonella enterica strain PNUSAS395819 SAMN37997470-rid19957683.guided.18, whole genome shotgun sequence	19729..20166	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKGD010000002.1	544763..545631	99.425	870	0						
GCA_033087135.1_PDT001954244.1_genomic.fna	Salmonella_enterica	0.5217	499.221 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,aadA2b,blaCARB-2,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKGG010000001.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.denovo.01, whole genome shotgun sequence	699249..699686	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOKGG010000023.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.denovo.29, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOKGG010000028.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.guided.12, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOKGG010000032.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.guided.27, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	aadA2b	99.87	780/780	ABOKGG010000033.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.guided.28, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	99.88	867/867	ABOKGG010000023.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.denovo.29, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOKGG010000032.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.guided.27, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	99.88	867/867	ABOKGG010000033.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.guided.28, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOKGG010000022.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.denovo.26, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOKGG010000031.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.guided.25, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOKGG010000020.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.denovo.23, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOKGG010000034.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.guided.30, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOKGG010000023.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.denovo.29, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOKGG010000032.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.guided.27, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOKGG010000033.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.guided.28, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOKGG010000024.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.denovo.33, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOKGG010000036.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.guided.32, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOKGG010000020.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.denovo.23, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOKGG010000035.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.guided.31, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOKGG010000020.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.denovo.23, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOKGG010000035.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.guided.31, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																					parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOKGG010000019.1 Salmonella enterica strain PNUSAS395814 SAMN37997478-rid19957643.denovo.22, whole genome shotgun sequence	8402..8652																																																						avrA	ABOKGG010000002.1	586519..587388	99.77	870	0						
GCA_033087155.1_PDT001954248.1_genomic.fna	Salmonella_enterica	0.5217	736.459 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKGF010000001.1 Salmonella enterica strain PNUSAS395817 SAMN37997467-rid19958453.denovo.01, whole genome shotgun sequence	395257..395694	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKGF010000016.1 Salmonella enterica strain PNUSAS395817 SAMN37997467-rid19958453.guided.10, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKGF010000002.1	562179..563047	99.655	870	0						
GCA_033087215.1_PDT001954255.1_genomic.fna	Salmonella_enterica	0.5207	344.8 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_167,sucA_15,thrA_4	3624	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_167	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKGK010000001.1 Salmonella enterica strain PNUSAS395826 SAMN37997502-rid19957713.denovo.01, whole genome shotgun sequence	149648..150085	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKGK010000020.1 Salmonella enterica strain PNUSAS395826 SAMN37997502-rid19957713.guided.18, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033087235.1_PDT001954254.1_genomic.fna	Salmonella_enterica	0.5218	366.725 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKGJ010000001.1 Salmonella enterica strain PNUSAS395827 SAMN37997501-rid19957703.denovo.01, whole genome shotgun sequence	558097..558534	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKGJ010000031.1 Salmonella enterica strain PNUSAS395827 SAMN37997501-rid19957703.guided.19, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKGJ010000011.1	93876..94744	99.195	870	0						
GCA_033087315.1_PDT001954245.1_genomic.fna	Salmonella_enterica	0.5198	740.12 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKGN010000001.1 Salmonella enterica strain PNUSAS395811 SAMN37997466-rid19957653.denovo.01, whole genome shotgun sequence	254890..255327	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKGN010000025.1 Salmonella enterica strain PNUSAS395811 SAMN37997466-rid19957653.guided.11, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKGN010000004.1	555958..556826	99.425	870	0						
GCA_033087335.1_PDT001954243.1_genomic.fna	Salmonella_enterica	0.5208	356.315 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKGO010000006.1 Salmonella enterica strain PNUSAS395813 SAMN37997460-rid19958443.denovo.06, whole genome shotgun sequence	219180..219617	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKGO010000041.1 Salmonella enterica strain PNUSAS395813 SAMN37997460-rid19958443.guided.12, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKGO010000010.1	140140..141008	99.195	870	0						
GCA_033087355.1_PDT001954242.1_genomic.fna	Salmonella_enterica	0.5217	222.497 KB	6	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKGP010000001.1 Salmonella enterica strain PNUSAS395809 SAMN37997463-rid19958433.denovo.01, whole genome shotgun sequence	406764..407201	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKGP010000046.1 Salmonella enterica strain PNUSAS395809 SAMN37997463-rid19958433.guided.31, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	93.53	139 / 142	ABOKGP010000018.1 Salmonella enterica strain PNUSAS395809 SAMN37997463-rid19958433.denovo.18, whole genome shotgun sequence	70705..70842																																																																	
GCA_033087375.1_PDT001954241.1_genomic.fna	Salmonella_enterica	0.5214	219.372 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKGQ010000001.1 Salmonella enterica strain PNUSAS395812 SAMN37997477-rid19957633.denovo.01, whole genome shotgun sequence	337477..337914	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKGQ010000044.1 Salmonella enterica strain PNUSAS395812 SAMN37997477-rid19957633.guided.22, whole genome shotgun sequence	30885..31322	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOKGQ010000016.1 Salmonella enterica strain PNUSAS395812 SAMN37997477-rid19957633.denovo.16, whole genome shotgun sequence	44635..45277	enterobacteriales	IncFII(S)	100	262 / 262	ABOKGQ010000016.1 Salmonella enterica strain PNUSAS395812 SAMN37997477-rid19957633.denovo.16, whole genome shotgun sequence	60362..60623																																																avrA	ABOKGQ010000004.1	95117..95986	99.885	870	0						
GCA_033087395.1_PDT001954239.1_genomic.fna	Salmonella_enterica	0.521	489.437 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKGS010000001.1 Salmonella enterica strain PNUSAS395820 SAMN37997468-rid19957623.denovo.01, whole genome shotgun sequence	706503..706940	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKGS010000022.1 Salmonella enterica strain PNUSAS395820 SAMN37997468-rid19957623.guided.13, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKGS010000013.1 Salmonella enterica strain PNUSAS395820 SAMN37997468-rid19957623.denovo.15, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	ABOKGS010000013.1 Salmonella enterica strain PNUSAS395820 SAMN37997468-rid19957623.denovo.15, whole genome shotgun sequence	4078..4339																																																avrA	ABOKGS010000005.1	140720..141589	99.54	870	0						
GCA_033087455.1_PDT001954240.1_genomic.fna	Salmonella_enterica	0.5211	250.327 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKGR010000001.1 Salmonella enterica strain PNUSAS395815 SAMN37997479-rid19958423.denovo.01, whole genome shotgun sequence	622355..622792	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKGR010000041.1 Salmonella enterica strain PNUSAS395815 SAMN37997479-rid19958423.guided.26, whole genome shotgun sequence	17529..17966	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	100	316 / 316	ABOKGR010000020.1 Salmonella enterica strain PNUSAS395815 SAMN37997479-rid19958423.denovo.20, whole genome shotgun sequence	26496..26811																																																						avrA	ABOKGR010000003.1	39524..40393	99.655	870	0						
GCA_033087475.1_PDT001954237.1_genomic.fna	Salmonella_enterica	0.52	403.617 KB	5	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKGU010000001.1 Salmonella enterica strain PNUSAS395821 SAMN37997469-rid19957613.denovo.01, whole genome shotgun sequence	658387..658824	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKGU010000057.1 Salmonella enterica strain PNUSAS395821 SAMN37997469-rid19957613.guided.14, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOKGU010000024.1 Salmonella enterica strain PNUSAS395821 SAMN37997469-rid19957613.denovo.27, whole genome shotgun sequence	11595..12237																																																						avrA	ABOKGU010000004.1	150722..151591	99.77	870	0						
GCA_033087495.1_PDT001954234.1_genomic.fna	Salmonella_enterica	0.5215	640.815 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKGW010000001.1 Salmonella enterica strain PNUSAS395816 SAMN37997461-rid19957583.denovo.01, whole genome shotgun sequence	596123..596560	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKGW010000021.1 Salmonella enterica strain PNUSAS395816 SAMN37997461-rid19957583.guided.15, whole genome shotgun sequence	21006..21443	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKGW010000004.1	544607..545475	99.425	870	0						
GCA_033087515.1_PDT001954235.1_genomic.fna	Salmonella_enterica	0.5208	233.765 KB	8	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKGV010000016.1 Salmonella enterica strain PNUSAS395818 SAMN37997471-rid19957593.denovo.16, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKGV010000062.1 Salmonella enterica strain PNUSAS395818 SAMN37997471-rid19957593.guided.31, whole genome shotgun sequence	16455..16892	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKGV010000001.1	145039..145907	99.31	870	0						
GCA_033087555.1_PDT001954606.1_genomic.fna	Salmonella_enterica	0.5214	489.998 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00791 isolate VISAVET_ZTA20_00791 SAMEA112356991-rid19961093.denovo.01, whole genome shotgun sequence	815083..815520	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCB010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00791 isolate VISAVET_ZTA20_00791 SAMEA112356991-rid19961093.guided.20, whole genome shotgun sequence	345..782	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPCB010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00791 isolate VISAVET_ZTA20_00791 SAMEA112356991-rid19961093.denovo.12, whole genome shotgun sequence	40537..41179	enterobacteriales	IncFII(S)	100	262 / 262	DAQPCB010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00791 isolate VISAVET_ZTA20_00791 SAMEA112356991-rid19961093.denovo.16, whole genome shotgun sequence	3429..3690																																																avrA	DAQPCB010000002.1	552958..553827	99.54	870	0						
GCA_033087575.1_PDT001954615.1_genomic.fna	Salmonella_enterica	0.5214	183.312 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCA010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00813 isolate VISAVET_ZTA20_00813 SAMEA112357013-rid19961123.denovo.09, whole genome shotgun sequence	5643..6080	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCA010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00813 isolate VISAVET_ZTA20_00813 SAMEA112357013-rid19961123.guided.33, whole genome shotgun sequence	3762..4199	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																																																																											avrA	DAQPCA010000001.1	553075..553944	99.54	870	0						
GCA_033087595.1_PDT001954586.1_genomic.fna	Salmonella_enterica	0.5213	400.834 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQPCC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00756 isolate VISAVET_ZTA20_00756 SAMEA112356956-rid19961013.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQPCC010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00756 isolate VISAVET_ZTA20_00756 SAMEA112356956-rid19961013.guided.27, whole genome shotgun sequence	1177..1614	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	90.84	131 / 131	DAQPCC010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00756 isolate VISAVET_ZTA20_00756 SAMEA112356956-rid19961013.denovo.22, whole genome shotgun sequence	3852..3982	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPCC010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00756 isolate VISAVET_ZTA20_00756 SAMEA112356956-rid19961013.denovo.13, whole genome shotgun sequence	35899..36541		enterobacteriales	IncFII(S)	100	262 / 262	DAQPCC010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00756 isolate VISAVET_ZTA20_00756 SAMEA112356956-rid19961013.denovo.20, whole genome shotgun sequence	3413..3674																																									avrA	DAQPCC010000006.1	140720..141589	99.54	870	0						
GCA_033087605.1_PDT001954588.1_genomic.fna	Salmonella_enterica	0.5213	489.989 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQPCD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00758 isolate VISAVET_ZTA20_00758 SAMEA112356958-rid19961023.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQPCD010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00758 isolate VISAVET_ZTA20_00758 SAMEA112356958-rid19961023.guided.25, whole genome shotgun sequence	406..843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	90.84	131 / 131	DAQPCD010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00758 isolate VISAVET_ZTA20_00758 SAMEA112356958-rid19961023.denovo.21, whole genome shotgun sequence	3852..3982	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPCD010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00758 isolate VISAVET_ZTA20_00758 SAMEA112356958-rid19961023.denovo.13, whole genome shotgun sequence	40543..41185		enterobacteriales	IncFII(S)	100	262 / 262	DAQPCD010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00758 isolate VISAVET_ZTA20_00758 SAMEA112356958-rid19961023.denovo.19, whole genome shotgun sequence	3395..3656																																									avrA	DAQPCD010000002.1	553175..554044	99.54	870	0						
GCA_033087635.1_PDT001954573.1_genomic.fna	Salmonella_enterica	0.5213	406.409 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCE010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00316 isolate VISAVET_ZTA20_00316 SAMEA112356938-rid19960963.denovo.02, whole genome shotgun sequence	222835..223272	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCE010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00316 isolate VISAVET_ZTA20_00316 SAMEA112356938-rid19960963.guided.27, whole genome shotgun sequence	3130..3567	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPCE010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00316 isolate VISAVET_ZTA20_00316 SAMEA112356938-rid19960963.denovo.22, whole genome shotgun sequence	40531..41173	enterobacteriales	IncFII(S)	100	262 / 262	DAQPCE010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00316 isolate VISAVET_ZTA20_00316 SAMEA112356938-rid19960963.denovo.26, whole genome shotgun sequence	3436..3697																																																avrA	DAQPCE010000001.1	553081..553950	99.54	870	0						
GCA_033087655.1_PDT001954563.1_genomic.fna	Salmonella_enterica	0.5219	59.697 KB	23	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCG010000072.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02392_5SR2 isolate VISAVET_ZTA16_02392_5SR2 SAMEA112356887-rid19960923.denovo.072, whole genome shotgun sequence	14113..14550	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCG010000155.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02392_5SR2 isolate VISAVET_ZTA16_02392_5SR2 SAMEA112356887-rid19960923.guided.128, whole genome shotgun sequence	1124..1561	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPCG010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02392_5SR2 isolate VISAVET_ZTA16_02392_5SR2 SAMEA112356887-rid19960923.denovo.032, whole genome shotgun sequence	36647..37289	enterobacteriales	IncFII(S)	100	262 / 262	DAQPCG010000103.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02392_5SR2 isolate VISAVET_ZTA16_02392_5SR2 SAMEA112356887-rid19960923.denovo.103, whole genome shotgun sequence	3407..3668																																																avrA	DAQPCG010000078.1	15855..16724	99.54	870	0						
GCA_033087675.1_PDT001954565.1_genomic.fna	Salmonella_enterica	0.5216	177.778 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCF010000009.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02991_1SR2 isolate VISAVET_ZTA16_02991_1SR2 SAMEA112356890-rid19960933.denovo.09, whole genome shotgun sequence	25497..25934	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCF010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02991_1SR2 isolate VISAVET_ZTA16_02991_1SR2 SAMEA112356890-rid19960933.guided.44, whole genome shotgun sequence	5566..6003	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQPCF010000005.1	149516..150385	99.54	870	0						
GCA_033087695.1_PDT001954555.1_genomic.fna	Salmonella_enterica	0.5214	284.117 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCI010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_01656_3SR2 isolate VISAVET_ZTA14_01656_3SR2 SAMEA112356865-rid19960723.denovo.04, whole genome shotgun sequence	62356..62793	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCI010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_01656_3SR2 isolate VISAVET_ZTA14_01656_3SR2 SAMEA112356865-rid19960723.guided.37, whole genome shotgun sequence	110..547	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPCI010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_01656_3SR2 isolate VISAVET_ZTA14_01656_3SR2 SAMEA112356865-rid19960723.denovo.22, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	DAQPCI010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_01656_3SR2 isolate VISAVET_ZTA14_01656_3SR2 SAMEA112356865-rid19960723.denovo.29, whole genome shotgun sequence	3401..3662																																																avrA	DAQPCI010000001.1	553636..554505	99.54	870	0						
GCA_033087715.1_PDT001954560.1_genomic.fna	Salmonella_enterica	0.5215	216.899 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCH010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA15_01568_4SR2 isolate VISAVET_ZTA15_01568_4SR2 SAMEA112356878-rid19960913.denovo.02, whole genome shotgun sequence	20073..20510	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCH010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA15_01568_4SR2 isolate VISAVET_ZTA15_01568_4SR2 SAMEA112356878-rid19960913.guided.45, whole genome shotgun sequence	2207..2644	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPCH010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA15_01568_4SR2 isolate VISAVET_ZTA15_01568_4SR2 SAMEA112356878-rid19960913.denovo.26, whole genome shotgun sequence	35782..36424	enterobacteriales	IncFII(S)	100	262 / 262	DAQPCH010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA15_01568_4SR2 isolate VISAVET_ZTA15_01568_4SR2 SAMEA112356878-rid19960913.denovo.38, whole genome shotgun sequence	3859..4120																																																avrA	DAQPCH010000008.1	140720..141589	99.54	870	0						
GCA_033087735.1_PDT001954551.1_genomic.fna	Salmonella_enterica	0.522	62.188 KB	22	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCJ010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_00566 isolate VISAVET_ZTA14_00566 SAMEA112356861-rid19960893.denovo.065, whole genome shotgun sequence	3678..4115	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCJ010000171.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_00566 isolate VISAVET_ZTA14_00566 SAMEA112356861-rid19960893.guided.137, whole genome shotgun sequence	615..1052	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPCJ010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_00566 isolate VISAVET_ZTA14_00566 SAMEA112356861-rid19960893.denovo.039, whole genome shotgun sequence	35772..36414	enterobacteriales	IncFII(S)	100	262 / 262	DAQPCJ010000092.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_00566 isolate VISAVET_ZTA14_00566 SAMEA112356861-rid19960893.denovo.092, whole genome shotgun sequence	1759..2020																																																avrA	DAQPCJ010000032.1	48989..49858	99.54	870	0						
GCA_033087755.1_PDT001954538.1_genomic.fna	Salmonella_enterica	0.5243	30.583 KB	44	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCK010000073.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA11_00897SM2 isolate VISAVET_ZTA11_00897SM2 SAMEA112356833-rid19960853.denovo.073, whole genome shotgun sequence	14085..14522	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCK010000306.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA11_00897SM2 isolate VISAVET_ZTA11_00897SM2 SAMEA112356833-rid19960853.guided.215, whole genome shotgun sequence	676..1113	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPCK010000222.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA11_00897SM2 isolate VISAVET_ZTA11_00897SM2 SAMEA112356833-rid19960853.denovo.225, whole genome shotgun sequence	1580..2222	enterobacteriales	IncFII(S)	100	262 / 262	DAQPCK010000124.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA11_00897SM2 isolate VISAVET_ZTA11_00897SM2 SAMEA112356833-rid19960853.denovo.124, whole genome shotgun sequence	4073..4334																																																avrA	DAQPCK010000036.1	24751..25620	99.54	870	0						
GCA_033087775.1_PDT001954528.1_genomic.fna	Salmonella_enterica	0.5213	345.73 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_00515_SK1 isolate VISAVET_ZTA09_00515_SK1 SAMEA112356809-rid19960823.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCL010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_00515_SK1 isolate VISAVET_ZTA09_00515_SK1 SAMEA112356809-rid19960823.guided.24, whole genome shotgun sequence	1284..1721	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPCL010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_00515_SK1 isolate VISAVET_ZTA09_00515_SK1 SAMEA112356809-rid19960823.denovo.15, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	DAQPCL010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_00515_SK1 isolate VISAVET_ZTA09_00515_SK1 SAMEA112356809-rid19960823.denovo.15, whole genome shotgun sequence	4416..4677																																																avrA	DAQPCL010000004.1	140720..141589	99.54	870	0						
GCA_033087795.1_PDT001954232.1_genomic.fna	Salmonella_enterica	0.5214	231.101 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKGZ010000003.1 Salmonella enterica strain PNUSAS395807 SAMN37997465-rid19958403.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKGZ010000042.1 Salmonella enterica strain PNUSAS395807 SAMN37997465-rid19958403.guided.15, whole genome shotgun sequence	36713..37150	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOKGZ010000015.1 Salmonella enterica strain PNUSAS395807 SAMN37997465-rid19958403.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOKGZ010000015.1 Salmonella enterica strain PNUSAS395807 SAMN37997465-rid19958403.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABOKGZ010000002.1	401480..402348	100	869	0						
GCA_033087815.1_PDT001954518.1_genomic.fna	Salmonella_enterica	0.5215	490.137 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM09_00296_2SM1 isolate VISAVET_DICM09_00296_2SM1 SAMEA112356783-rid19960793.denovo.01, whole genome shotgun sequence	733921..734358	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCM010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM09_00296_2SM1 isolate VISAVET_DICM09_00296_2SM1 SAMEA112356783-rid19960793.guided.19, whole genome shotgun sequence	2592..3029	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPCM010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM09_00296_2SM1 isolate VISAVET_DICM09_00296_2SM1 SAMEA112356783-rid19960793.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	DAQPCM010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM09_00296_2SM1 isolate VISAVET_DICM09_00296_2SM1 SAMEA112356783-rid19960793.denovo.18, whole genome shotgun sequence	3414..3675																																																avrA	DAQPCM010000002.1	553505..554374	99.54	870	0						
GCA_033087835.1_PDT001954233.1_genomic.fna	Salmonella_enterica	0.5213	682.831 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKGX010000001.1 Salmonella enterica strain PNUSAS395810 SAMN37997462-rid19958413.denovo.01, whole genome shotgun sequence	510589..511026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKGX010000028.1 Salmonella enterica strain PNUSAS395810 SAMN37997462-rid19958413.guided.13, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKGX010000004.1	544151..545019	99.425	870	0						
GCA_033087855.1_PDT001954231.1_genomic.fna	Salmonella_enterica	0.5204	492.355 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKHA010000001.1 Salmonella enterica strain PNUSAS395808 SAMN37997464-rid19957573.denovo.01, whole genome shotgun sequence	422056..422493	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKHA010000026.1 Salmonella enterica strain PNUSAS395808 SAMN37997464-rid19957573.guided.09, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOKHA010000012.1 Salmonella enterica strain PNUSAS395808 SAMN37997464-rid19957573.denovo.13, whole genome shotgun sequence	34930..35463																																																						avrA	ABOKHA010000003.1	392674..393542	99.425	870	0						
GCA_033088015.1_PDT001954210.1_genomic.fna	Salmonella_enterica	0.5218	257.54 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKHI010000001.1 Salmonella enterica strain PNUSAS395739 SAMN37997216-rid19957413.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKHI010000050.1 Salmonella enterica strain PNUSAS395739 SAMN37997216-rid19957413.guided.36, whole genome shotgun sequence	3681..4118	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKHI010000002.1	208425..209293	99.77	870	0						
GCA_033088035.1_PDT001954211.1_genomic.fna	Salmonella_enterica	0.5222	440.458 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKHH010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain 23MI09PC01-L-S1 SAMN37993869-rid19957423.denovo.01, whole genome shotgun sequence	460175..460612	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKHH010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain 23MI09PC01-L-S1 SAMN37993869-rid19957423.guided.22, whole genome shotgun sequence	10019..10456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKHH010000002.1	151256..152125	99.655	870	0						
GCA_033088055.1_PDT001954209.1_genomic.fna	Salmonella_enterica	0.5219	411.847 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOKHJ010000001.1 Salmonella enterica strain PNUSAS395737 SAMN37997215-rid19957403.denovo.01, whole genome shotgun sequence	834600..835037	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOKHJ010000028.1 Salmonella enterica strain PNUSAS395737 SAMN37997215-rid19957403.guided.22, whole genome shotgun sequence	1278..1715	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKHJ010000002.1	563804..564673	99.77	870	0						
GCA_033088075.1_PDT001954208.1_genomic.fna	Salmonella_enterica	0.5209	584.988 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKHK010000001.1 Salmonella enterica strain PNUSAS395731 SAMN37997212-rid19958343.denovo.01, whole genome shotgun sequence	644847..645284	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKHK010000028.1 Salmonella enterica strain PNUSAS395731 SAMN37997212-rid19958343.guided.21, whole genome shotgun sequence	2929..3366	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOKHK010000013.1 Salmonella enterica strain PNUSAS395731 SAMN37997212-rid19958343.denovo.13, whole genome shotgun sequence	80789..80930																																																																	
GCA_033088095.1_PDT001954207.1_genomic.fna	Salmonella_enterica	0.5214	729.55 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKHL010000001.1 Salmonella enterica strain PNUSAS395736 SAMN37997214-rid19957393.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKHL010000026.1 Salmonella enterica strain PNUSAS395736 SAMN37997214-rid19957393.guided.22, whole genome shotgun sequence	2147..2584	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKHL010000017.1 Salmonella enterica strain PNUSAS395736 SAMN37997214-rid19957393.denovo.17, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOKHL010000018.1 Salmonella enterica strain PNUSAS395736 SAMN37997214-rid19957393.denovo.19, whole genome shotgun sequence	3393..3654																																																avrA	ABOKHL010000003.1	553636..554505	99.54	870	0						
GCA_033088115.1_PDT001954206.1_genomic.fna	Salmonella_enterica	0.5203	406.451 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKHM010000001.1 Salmonella enterica strain PNUSAS395730 SAMN37997210-rid19957383.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKHM010000030.1 Salmonella enterica strain PNUSAS395730 SAMN37997210-rid19957383.guided.16, whole genome shotgun sequence	32238..32675	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKHM010000020.1 Salmonella enterica strain PNUSAS395730 SAMN37997210-rid19957383.denovo.23, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOKHM010000021.1 Salmonella enterica strain PNUSAS395730 SAMN37997210-rid19957383.denovo.24, whole genome shotgun sequence	3391..3652		enterobacteriales	IncX1	98.93	374 / 374	ABOKHM010000016.1 Salmonella enterica strain PNUSAS395730 SAMN37997210-rid19957383.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABOKHM010000002.1	553584..554453	99.54	870	0						
GCA_033088255.1_PDT001954205.1_genomic.fna	Salmonella_enterica	0.5193	123.873 KB	13	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKHN010000020.1 Salmonella enterica strain PNUSAS395741 SAMN37997211-rid19958333.denovo.020, whole genome shotgun sequence	75482..75919	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKHN010000114.1 Salmonella enterica strain PNUSAS395741 SAMN37997211-rid19958333.guided.089, whole genome shotgun sequence	1081..1518	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOKHN010000078.1 Salmonella enterica strain PNUSAS395741 SAMN37997211-rid19958333.denovo.080, whole genome shotgun sequence	763..893	enterobacteriales	IncHI2A	99.52	630 / 630	ABOKHN010000062.1 Salmonella enterica strain PNUSAS395741 SAMN37997211-rid19958333.denovo.063, whole genome shotgun sequence	5615..6244		enterobacteriales	IncX1	100	373 / 373	ABOKHN010000057.1 Salmonella enterica strain PNUSAS395741 SAMN37997211-rid19958333.denovo.057, whole genome shotgun sequence	2153..2525																																									avrA	ABOKHN010000027.1	62009..62878	99.655	870	0						
GCA_033088275.1_PDT001954201.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKHQ010000001.1 Salmonella enterica strain PNUSAS395740 SAMN37997133-rid19957353.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKHQ010000018.1 Salmonella enterica strain PNUSAS395740 SAMN37997133-rid19957353.denovo.18, whole genome shotgun sequence	6834..7476	enterobacteriales	IncFII(S)	100	262 / 262	ABOKHQ010000020.1 Salmonella enterica strain PNUSAS395740 SAMN37997133-rid19957353.denovo.22, whole genome shotgun sequence	3403..3664																																																avrA	ABOKHQ010000002.1	553636..554505	99.54	870	0						
GCA_033088285.1_PDT001954204.1_genomic.fna	Salmonella_enterica	0.5179	223.805 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	6	aac(6')-Iaa,aadA7,aph(3')-Ia,aac(6')-Iaa,aadA7,aph(3')-Ia,sul1,sul1,tet(B),tet(C),tet(B),tet(C)	0		3	IncHI2,IncHI2A,IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKHO010000001.1 Salmonella enterica strain PNUSAS395738 SAMN37997213-rid19957373.denovo.01, whole genome shotgun sequence	482680..483117	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	ABOKHO010000036.1 Salmonella enterica strain PNUSAS395738 SAMN37997213-rid19957373.denovo.36, whole genome shotgun sequence	2976..3773	Spectinomycin, Streptomycin	AF224733	aph(3')-Ia	99.75	816/816	ABOKHO010000044.1 Salmonella enterica strain PNUSAS395738 SAMN37997213-rid19957373.denovo.51, whole genome shotgun sequence	524..1339	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EU855787	aac(6')-Iaa	100	438/438	ABOKHO010000061.1 Salmonella enterica strain PNUSAS395738 SAMN37997213-rid19957373.guided.39, whole genome shotgun sequence	5528..5965	Amikacin, Tobramycin	NC_003197	aadA7	100	798/798	ABOKHO010000063.1 Salmonella enterica strain PNUSAS395738 SAMN37997213-rid19957373.guided.43, whole genome shotgun sequence	3119..3916	Spectinomycin, Streptomycin	AF224733	aph(3')-Ia	99.75	816/816	ABOKHO010000066.1 Salmonella enterica strain PNUSAS395738 SAMN37997213-rid19957373.guided.52, whole genome shotgun sequence	107..922	Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin	EU855787	sul1	100	840/840	ABOKHO010000036.1 Salmonella enterica strain PNUSAS395738 SAMN37997213-rid19957373.denovo.36, whole genome shotgun sequence	1632..2471	Sulfamethoxazole	U12338	sul1	100	840/840	ABOKHO010000065.1 Salmonella enterica strain PNUSAS395738 SAMN37997213-rid19957373.guided.50, whole genome shotgun sequence	28..867	Sulfamethoxazole	U12338	tet(B)	100	1206/1206	ABOKHO010000034.1 Salmonella enterica strain PNUSAS395738 SAMN37997213-rid19957373.denovo.34, whole genome shotgun sequence	10139..11344	Doxycycline, Tetracycline, Minocycline	AF326777	tet(C)	99.83	1191/1191	ABOKHO010000036.1 Salmonella enterica strain PNUSAS395738 SAMN37997213-rid19957373.denovo.36, whole genome shotgun sequence	9600..10790	Doxycycline, Tetracycline	AF055345	tet(B)	100	1206/1206	ABOKHO010000060.1 Salmonella enterica strain PNUSAS395738 SAMN37997213-rid19957373.guided.38, whole genome shotgun sequence	3258..4463	Doxycycline, Tetracycline, Minocycline	AF326777	tet(C)	99.83	1191/1191	ABOKHO010000064.1 Salmonella enterica strain PNUSAS395738 SAMN37997213-rid19957373.guided.46, whole genome shotgun sequence	1191..2381	Doxycycline, Tetracycline	AF055345																																																																																																																																																																																																																																																																																																																																																																																																								enterobacteriales	IncHI2	100	327 / 327	ABOKHO010000009.1 Salmonella enterica strain PNUSAS395738 SAMN37997213-rid19957373.denovo.09, whole genome shotgun sequence	81773..82099	enterobacteriales	IncHI2A	99.52	630 / 630	ABOKHO010000009.1 Salmonella enterica strain PNUSAS395738 SAMN37997213-rid19957373.denovo.09, whole genome shotgun sequence	100083..100712		enterobacteriales	IncI2(Delta)	97.83	322 / 316	ABOKHO010000032.1 Salmonella enterica strain PNUSAS395738 SAMN37997213-rid19957373.denovo.32, whole genome shotgun sequence	7443..7764																																									avrA	ABOKHO010000004.1	93865..94734	99.885	870	0						
GCA_033088305.1_PDT001954202.1_genomic.fna	Salmonella_enterica	0.5204	386.287 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKHP010000001.1 Salmonella enterica strain PNUSAS395734 SAMN37997135-rid19957363.denovo.01, whole genome shotgun sequence	414766..415203	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKHP010000023.1 Salmonella enterica strain PNUSAS395734 SAMN37997135-rid19957363.guided.14, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033088435.1_PDT001954617.1_genomic.fna	Salmonella_enterica	0.5214	284.063 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCS010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00817 isolate VISAVET_ZTA20_00817 SAMEA112357017-rid19964053.denovo.08, whole genome shotgun sequence	137941..138378	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCS010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00817 isolate VISAVET_ZTA20_00817 SAMEA112357017-rid19964053.guided.26, whole genome shotgun sequence	1333..1770	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPCS010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00817 isolate VISAVET_ZTA20_00817 SAMEA112357017-rid19964053.denovo.20, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	DAQPCS010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00817 isolate VISAVET_ZTA20_00817 SAMEA112357017-rid19964053.denovo.27, whole genome shotgun sequence	3399..3660																																																avrA	DAQPCS010000001.1	553620..554489	99.54	870	0						
GCA_033088475.1_PDT001954618.1_genomic.fna	Salmonella_enterica	0.5203	438.974 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00818 isolate VISAVET_ZTA20_00818 SAMEA112357018-rid19961133.denovo.01, whole genome shotgun sequence	815099..815536	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCU010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00818 isolate VISAVET_ZTA20_00818 SAMEA112357018-rid19961133.guided.31, whole genome shotgun sequence	341..778	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQPCU010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00818 isolate VISAVET_ZTA20_00818 SAMEA112357018-rid19961133.denovo.16, whole genome shotgun sequence	42212..43072	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQPCU010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00818 isolate VISAVET_ZTA20_00818 SAMEA112357018-rid19961133.guided.29, whole genome shotgun sequence	2466..3326	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPCU010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00818 isolate VISAVET_ZTA20_00818 SAMEA112357018-rid19961133.denovo.23, whole genome shotgun sequence	14659..15301	enterobacteriales	IncFII(S)	100	262 / 262	DAQPCU010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00818 isolate VISAVET_ZTA20_00818 SAMEA112357018-rid19961133.denovo.24, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	99.47	377 / 377	DAQPCU010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00818 isolate VISAVET_ZTA20_00818 SAMEA112357018-rid19961133.denovo.16, whole genome shotgun sequence	767..1143																																									avrA	DAQPCU010000002.1	553082..553951	99.54	870	0						
GCA_033088495.1_PDT001954616.1_genomic.fna	Salmonella_enterica	0.5213	311.94 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00815 isolate VISAVET_ZTA20_00815 SAMEA112357015-rid19964043.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCW010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00815 isolate VISAVET_ZTA20_00815 SAMEA112357015-rid19964043.guided.24, whole genome shotgun sequence	1402..1839	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPCW010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00815 isolate VISAVET_ZTA20_00815 SAMEA112357015-rid19964043.denovo.21, whole genome shotgun sequence	8025..8667	enterobacteriales	IncFII(S)	100	262 / 262	DAQPCW010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00815 isolate VISAVET_ZTA20_00815 SAMEA112357015-rid19964043.denovo.22, whole genome shotgun sequence	3418..3679																																																avrA	DAQPCW010000002.1	140720..141589	99.54	870	0						
GCA_033088515.1_PDT001954614.1_genomic.fna	Salmonella_enterica	0.5213	441.338 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCV010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00807 isolate VISAVET_ZTA20_00807 SAMEA112357007-rid19964033.denovo.02, whole genome shotgun sequence	26519..26956	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCV010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00807 isolate VISAVET_ZTA20_00807 SAMEA112357007-rid19964033.guided.23, whole genome shotgun sequence	607..1044	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQPCV010000001.1	553181..554050	99.54	870	0						
GCA_033088525.1_PDT001954619.1_genomic.fna	Salmonella_enterica	0.5213	291.393 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00819 isolate VISAVET_ZTA20_00819 SAMEA112357019-rid19964063.denovo.01, whole genome shotgun sequence	151858..152295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCT010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00819 isolate VISAVET_ZTA20_00819 SAMEA112357019-rid19964063.guided.28, whole genome shotgun sequence	74..511	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPCT010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00819 isolate VISAVET_ZTA20_00819 SAMEA112357019-rid19964063.denovo.18, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	DAQPCT010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00819 isolate VISAVET_ZTA20_00819 SAMEA112357019-rid19964063.denovo.23, whole genome shotgun sequence	3436..3697																																																avrA	DAQPCT010000002.1	553187..554056	99.54	870	0						
GCA_033088555.1_PDT001954611.1_genomic.fna	Salmonella_enterica	0.5214	348.856 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00802 isolate VISAVET_ZTA20_00802 SAMEA112357002-rid19962623.denovo.01, whole genome shotgun sequence	481457..481894	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCX010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00802 isolate VISAVET_ZTA20_00802 SAMEA112357002-rid19962623.guided.29, whole genome shotgun sequence	457..894	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPCX010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00802 isolate VISAVET_ZTA20_00802 SAMEA112357002-rid19962623.denovo.21, whole genome shotgun sequence	36138..36780	enterobacteriales	IncFII(S)	100	262 / 262	DAQPCX010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00802 isolate VISAVET_ZTA20_00802 SAMEA112357002-rid19962623.denovo.26, whole genome shotgun sequence	3309..3570																																																avrA	DAQPCX010000006.1	140720..141589	99.54	870	0						
GCA_033088575.1_PDT001954613.1_genomic.fna	Salmonella_enterica	0.5213	477.313 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPCY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00805 isolate VISAVET_ZTA20_00805 SAMEA112357005-rid19962643.denovo.01, whole genome shotgun sequence	185071..185508	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPCY010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00805 isolate VISAVET_ZTA20_00805 SAMEA112357005-rid19962643.guided.21, whole genome shotgun sequence	692..1129	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQPCY010000002.1	553171..554040	99.54	870	0						
GCA_033088595.1_PDT001954608.1_genomic.fna	Salmonella_enterica	0.5213	375.704 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00798 isolate VISAVET_ZTA20_00798 SAMEA112356998-rid19961103.denovo.01, whole genome shotgun sequence	537462..537899	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDC010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00798 isolate VISAVET_ZTA20_00798 SAMEA112356998-rid19961103.guided.27, whole genome shotgun sequence	588..1025	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDC010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00798 isolate VISAVET_ZTA20_00798 SAMEA112356998-rid19961103.denovo.15, whole genome shotgun sequence	9588..10230	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDC010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00798 isolate VISAVET_ZTA20_00798 SAMEA112356998-rid19961103.denovo.15, whole genome shotgun sequence	54222..54483																																																avrA	DAQPDC010000002.1	553069..553938	99.54	870	0						
GCA_033088615.1_PDT001954605.1_genomic.fna	Salmonella_enterica	0.5213	489.747 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00790 isolate VISAVET_ZTA20_00790 SAMEA112356990-rid19961083.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDF010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00790 isolate VISAVET_ZTA20_00790 SAMEA112356990-rid19961083.guided.22, whole genome shotgun sequence	26..463	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDF010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00790 isolate VISAVET_ZTA20_00790 SAMEA112356990-rid19961083.denovo.13, whole genome shotgun sequence	48331..48973	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDF010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00790 isolate VISAVET_ZTA20_00790 SAMEA112356990-rid19961083.denovo.13, whole genome shotgun sequence	4078..4339																																																avrA	DAQPDF010000002.1	553187..554056	99.54	870	0						
GCA_033088625.1_PDT001954607.1_genomic.fna	Salmonella_enterica	0.5205	439.018 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col(pHAD28),IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDA010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00794 isolate VISAVET_ZTA20_00794 SAMEA112356994-rid19964023.denovo.01, whole genome shotgun sequence	758444..758881	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDA010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00794 isolate VISAVET_ZTA20_00794 SAMEA112356994-rid19964023.guided.26, whole genome shotgun sequence	1000..1437	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQPDA010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00794 isolate VISAVET_ZTA20_00794 SAMEA112356994-rid19964023.denovo.23, whole genome shotgun sequence	856..986	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDA010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00794 isolate VISAVET_ZTA20_00794 SAMEA112356994-rid19964023.denovo.14, whole genome shotgun sequence	40539..41181		enterobacteriales	IncFII(S)	100	262 / 262	DAQPDA010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00794 isolate VISAVET_ZTA20_00794 SAMEA112356994-rid19964023.denovo.20, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	98.4	374 / 374	DAQPDA010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00794 isolate VISAVET_ZTA20_00794 SAMEA112356994-rid19964023.denovo.17, whole genome shotgun sequence	10523..10896																																		avrA	DAQPDA010000002.1	553187..554056	99.54	870	0						
GCA_033088655.1_PDT001954600.1_genomic.fna	Salmonella_enterica	0.5211	376.098 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00779 isolate VISAVET_ZTA20_00779 SAMEA112356979-rid19961073.denovo.01, whole genome shotgun sequence	508698..509135	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.18	419/438	DAQPDH010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00779 isolate VISAVET_ZTA20_00779 SAMEA112356979-rid19961073.guided.32, whole genome shotgun sequence	1..419	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDH010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00779 isolate VISAVET_ZTA20_00779 SAMEA112356979-rid19961073.denovo.17, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDH010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00779 isolate VISAVET_ZTA20_00779 SAMEA112356979-rid19961073.denovo.25, whole genome shotgun sequence	3412..3673																																																avrA	DAQPDH010000002.1	553241..554110	99.54	870	0						
GCA_033088675.1_PDT001954603.1_genomic.fna	Salmonella_enterica	0.521	217.053 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.denovo.01, whole genome shotgun sequence	18052..18489	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	DAQPDB010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.denovo.25, whole genome shotgun sequence	33381..34172	Spectinomycin, Streptomycin	JX185132	aadA1	100	792/792	DAQPDB010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.guided.49, whole genome shotgun sequence	1074..1865	Spectinomycin, Streptomycin	JX185132	aac(6')-Iaa	96.35	438/438	DAQPDB010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.guided.50, whole genome shotgun sequence	966..1403	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	DAQPDB010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.denovo.25, whole genome shotgun sequence	34677..35516	Sulfamethoxazole	U12338	sul1	100	840/840	DAQPDB010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.guided.52, whole genome shotgun sequence	328..1167	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQPDB010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.denovo.25, whole genome shotgun sequence	48033..49232	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQPDB010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.guided.45, whole genome shotgun sequence	1449..2648	Doxycycline, Tetracycline	AJ517790	dfrA1	99.79	474/474	DAQPDB010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.denovo.25, whole genome shotgun sequence	32815..33288	Trimethoprim	AF203818	dfrA1	99.79	474/474	DAQPDB010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.denovo.25, whole genome shotgun sequence	32815..33288	Trimethoprim	AJ238350	dfrA1	99.79	474/474	DAQPDB010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.denovo.25, whole genome shotgun sequence	32815..33288	Trimethoprim	X00926	dfrA1	99.79	474/474	DAQPDB010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.guided.49, whole genome shotgun sequence	508..981	Trimethoprim	AF203818	dfrA1	99.79	474/474	DAQPDB010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.guided.49, whole genome shotgun sequence	508..981	Trimethoprim	AJ238350	dfrA1	99.79	474/474	DAQPDB010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.guided.49, whole genome shotgun sequence	508..981	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDB010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.denovo.28, whole genome shotgun sequence	35846..36488	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDB010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.denovo.38, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	94.92	374 / 374	DAQPDB010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00786 isolate VISAVET_ZTA20_00786 SAMEA112356986-rid19962613.denovo.25, whole genome shotgun sequence	53436..53809																																									avrA	DAQPDB010000008.1	140720..141589	99.54	870	0						
GCA_033088695.1_PDT001954601.1_genomic.fna	Salmonella_enterica	0.5214	230.189 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col156,ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDG010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00784 isolate VISAVET_ZTA20_00784 SAMEA112356984-rid19962593.denovo.10, whole genome shotgun sequence	50943..51380	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDG010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00784 isolate VISAVET_ZTA20_00784 SAMEA112356984-rid19962593.guided.34, whole genome shotgun sequence	2997..3434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	DAQPDG010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00784 isolate VISAVET_ZTA20_00784 SAMEA112356984-rid19962593.denovo.33, whole genome shotgun sequence	967..1118	enterobacteriales	ColpVC	97.93	193 / 193	DAQPDG010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00784 isolate VISAVET_ZTA20_00784 SAMEA112356984-rid19962593.denovo.36, whole genome shotgun sequence	195..387		enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDG010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00784 isolate VISAVET_ZTA20_00784 SAMEA112356984-rid19962593.denovo.23, whole genome shotgun sequence	40558..41200		enterobacteriales	IncFII(S)	100	262 / 262	DAQPDG010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00784 isolate VISAVET_ZTA20_00784 SAMEA112356984-rid19962593.denovo.29, whole genome shotgun sequence	3403..3664																																		avrA	DAQPDG010000008.1	140719..141588	99.54	870	0						
GCA_033088715.1_PDT001954595.1_genomic.fna	Salmonella_enterica	0.5214	183.536 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDE010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00772 isolate VISAVET_ZTA20_00772 SAMEA112356972-rid19961043.denovo.32, whole genome shotgun sequence	14263..14700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.45	366/438	DAQPDE010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00772 isolate VISAVET_ZTA20_00772 SAMEA112356972-rid19961043.guided.49, whole genome shotgun sequence	1..366	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDE010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00772 isolate VISAVET_ZTA20_00772 SAMEA112356972-rid19961043.denovo.33, whole genome shotgun sequence	9125..9767	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDE010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00772 isolate VISAVET_ZTA20_00772 SAMEA112356972-rid19961043.denovo.38, whole genome shotgun sequence	3392..3653																																																avrA	DAQPDE010000001.1	553175..554044	99.54	870	0						
GCA_033088735.1_PDT001954585.1_genomic.fna	Salmonella_enterica	0.5205	401.094 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00755 isolate VISAVET_ZTA20_00755 SAMEA112356955-rid19961003.denovo.01, whole genome shotgun sequence	646657..647094	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.32	353/438	DAQPDI010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00755 isolate VISAVET_ZTA20_00755 SAMEA112356955-rid19961003.guided.25, whole genome shotgun sequence	1..353	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDI010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00755 isolate VISAVET_ZTA20_00755 SAMEA112356955-rid19961003.denovo.14, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDI010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00755 isolate VISAVET_ZTA20_00755 SAMEA112356955-rid19961003.denovo.21, whole genome shotgun sequence	3423..3684		enterobacteriales	IncX1	94.65	374 / 374	DAQPDI010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00755 isolate VISAVET_ZTA20_00755 SAMEA112356955-rid19961003.denovo.16, whole genome shotgun sequence	31592..31965																																									avrA	DAQPDI010000005.1	140720..141589	99.54	870	0						
GCA_033088755.1_PDT001954589.1_genomic.fna	Salmonella_enterica	0.5213	400.827 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDD010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00760 isolate VISAVET_ZTA20_00760 SAMEA112356960-rid19965063.denovo.10, whole genome shotgun sequence	73344..73781	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDD010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00760 isolate VISAVET_ZTA20_00760 SAMEA112356960-rid19965063.guided.26, whole genome shotgun sequence	537..974	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDD010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00760 isolate VISAVET_ZTA20_00760 SAMEA112356960-rid19965063.denovo.16, whole genome shotgun sequence	40520..41162	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDD010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00760 isolate VISAVET_ZTA20_00760 SAMEA112356960-rid19965063.denovo.21, whole genome shotgun sequence	3402..3663																																																avrA	DAQPDD010000002.1	553181..554050	99.54	870	0						
GCA_033088775.1_PDT001954590.1_genomic.fna	Salmonella_enterica	0.5214	489.768 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00761 isolate VISAVET_ZTA20_00761 SAMEA112356961-rid19961033.denovo.01, whole genome shotgun sequence	812549..812986	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDK010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00761 isolate VISAVET_ZTA20_00761 SAMEA112356961-rid19961033.guided.22, whole genome shotgun sequence	159..596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDK010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00761 isolate VISAVET_ZTA20_00761 SAMEA112356961-rid19961033.denovo.13, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDK010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00761 isolate VISAVET_ZTA20_00761 SAMEA112356961-rid19961033.denovo.16, whole genome shotgun sequence	3388..3649																																																avrA	DAQPDK010000002.1	553087..553956	99.54	870	0						
GCA_033088795.1_PDT001954623.1_genomic.fna	Salmonella_enterica	0.5221	258.92 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	8	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA2,catA2,sul2,sul1,sul1,sul2,tet(A),tet(A),dfrA7,dfrA7	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.denovo.01, whole genome shotgun sequence	331160..331597	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	DAQPDJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.denovo.33, whole genome shotgun sequence	649..1451	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAQPDJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.denovo.33, whole genome shotgun sequence	649..1452	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAQPDJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.denovo.33, whole genome shotgun sequence	649..1452	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAQPDJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.denovo.33, whole genome shotgun sequence	649..1452	Streptomycin	AF321550	aac(6')-Iaa	96.35	438/438	DAQPDJ010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.guided.20, whole genome shotgun sequence	44293..44730	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	DAQPDJ010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.guided.36, whole genome shotgun sequence	2197..2999	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAQPDJ010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.guided.36, whole genome shotgun sequence	2196..2999	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAQPDJ010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.guided.36, whole genome shotgun sequence	2196..2999	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAQPDJ010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.guided.36, whole genome shotgun sequence	2196..2999	Streptomycin	AF321550	blaTEM-1B	100	861/861	DAQPDJ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.denovo.38, whole genome shotgun sequence	977..1837	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQPDJ010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.guided.44, whole genome shotgun sequence	1018..1878	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA2	96.11	642/642	DAQPDJ010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.denovo.41, whole genome shotgun sequence	1627..2268	Chloramphenicol	X53796	catA2	96.11	642/642	DAQPDJ010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.guided.40, whole genome shotgun sequence	705..1346	Chloramphenicol	X53796	sul2	100	816/816	DAQPDJ010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.denovo.33, whole genome shotgun sequence	1513..2328	Sulfamethoxazole	FN995456	sul1	100	840/840	DAQPDJ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.denovo.35, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul1	100	840/840	DAQPDJ010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.guided.34, whole genome shotgun sequence	2953..3792	Sulfamethoxazole	U12338	sul2	100	816/816	DAQPDJ010000057.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.guided.36, whole genome shotgun sequence	1320..2135	Sulfamethoxazole	FN995456	tet(A)	100	1200/1200	DAQPDJ010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.denovo.31, whole genome shotgun sequence	3214..4413	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQPDJ010000058.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.guided.39, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790	dfrA7	100	474/474	DAQPDJ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.denovo.35, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQPDJ010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.guided.34, whole genome shotgun sequence	1909..2382	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDJ010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.denovo.26, whole genome shotgun sequence	5877..6519	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDJ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate C10522XXXX SAMEA114028043-rid19962663.denovo.24, whole genome shotgun sequence	3709..3970																																																avrA	DAQPDJ010000002.1	552738..553607	99.54	870	0						
GCA_033088815.1_PDT001954597.1_genomic.fna	Salmonella_enterica	0.5205	410.096 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00774 isolate VISAVET_ZTA20_00774 SAMEA112356974-rid19964003.denovo.01, whole genome shotgun sequence	404967..405404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDM010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00774 isolate VISAVET_ZTA20_00774 SAMEA112356974-rid19964003.guided.26, whole genome shotgun sequence	375..812	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDM010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00774 isolate VISAVET_ZTA20_00774 SAMEA112356974-rid19964003.denovo.15, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDM010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00774 isolate VISAVET_ZTA20_00774 SAMEA112356974-rid19964003.denovo.23, whole genome shotgun sequence	3400..3661		enterobacteriales	IncX1	94.65	374 / 374	DAQPDM010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00774 isolate VISAVET_ZTA20_00774 SAMEA112356974-rid19964003.denovo.18, whole genome shotgun sequence	31592..31965																																									avrA	DAQPDM010000009.1	140720..141589	99.54	870	0						
GCA_033088835.1_PDT001954584.1_genomic.fna	Salmonella_enterica	0.5213	412.518 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDL010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00753 isolate VISAVET_ZTA20_00753 SAMEA112356953-rid19963973.denovo.03, whole genome shotgun sequence	73492..73929	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDL010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00753 isolate VISAVET_ZTA20_00753 SAMEA112356953-rid19963973.guided.25, whole genome shotgun sequence	1718..2155	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDL010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00753 isolate VISAVET_ZTA20_00753 SAMEA112356953-rid19963973.denovo.17, whole genome shotgun sequence	9351..9993	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDL010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00753 isolate VISAVET_ZTA20_00753 SAMEA112356953-rid19963973.denovo.17, whole genome shotgun sequence	53985..54246																																																avrA	DAQPDL010000002.1	505547..506416	99.54	870	0						
GCA_033088875.1_PDT001954632.1_genomic.fna	Salmonella_enterica	0.5222	258.922 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	8	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA2,catA2,sul2,sul1,sul1,sul2,tet(A),tet(A),dfrA7,dfrA7	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.denovo.01, whole genome shotgun sequence	281400..281837	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	DAQPDN010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.denovo.37, whole genome shotgun sequence	649..1451	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAQPDN010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.denovo.37, whole genome shotgun sequence	649..1452	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAQPDN010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.denovo.37, whole genome shotgun sequence	649..1452	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAQPDN010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.denovo.37, whole genome shotgun sequence	649..1452	Streptomycin	AF321550	aac(6')-Iaa	96.35	438/438	DAQPDN010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.guided.21, whole genome shotgun sequence	35704..36141	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	DAQPDN010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.guided.40, whole genome shotgun sequence	2197..2999	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	DAQPDN010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.guided.40, whole genome shotgun sequence	2196..2999	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	DAQPDN010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.guided.40, whole genome shotgun sequence	2196..2999	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	DAQPDN010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.guided.40, whole genome shotgun sequence	2196..2999	Streptomycin	AF321550	blaTEM-1B	100	861/861	DAQPDN010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.denovo.35, whole genome shotgun sequence	977..1837	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQPDN010000065.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.guided.51, whole genome shotgun sequence	1018..1878	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA2	96.11	642/642	DAQPDN010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.denovo.46, whole genome shotgun sequence	1627..2268	Chloramphenicol	X53796	catA2	96.11	642/642	DAQPDN010000064.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.guided.45, whole genome shotgun sequence	705..1346	Chloramphenicol	X53796	sul2	100	816/816	DAQPDN010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.denovo.37, whole genome shotgun sequence	1513..2328	Sulfamethoxazole	FN995456	sul1	100	840/840	DAQPDN010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.denovo.39, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul1	100	840/840	DAQPDN010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.guided.38, whole genome shotgun sequence	2953..3792	Sulfamethoxazole	U12338	sul2	100	816/816	DAQPDN010000063.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.guided.40, whole genome shotgun sequence	1320..2135	Sulfamethoxazole	FN995456	tet(A)	100	1200/1200	DAQPDN010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.denovo.33, whole genome shotgun sequence	3214..4413	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQPDN010000061.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.guided.34, whole genome shotgun sequence	1095..2294	Doxycycline, Tetracycline	AJ517790	dfrA7	100	474/474	DAQPDN010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.denovo.39, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQPDN010000062.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.guided.38, whole genome shotgun sequence	1909..2382	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	91.6	131 / 131	DAQPDN010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.denovo.42, whole genome shotgun sequence	1251..1381	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDN010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.denovo.28, whole genome shotgun sequence	5879..6521		enterobacteriales	IncFII(S)	100	262 / 262	DAQPDN010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK066005S3AKIA1 SAMEA114028058-rid19962683.denovo.25, whole genome shotgun sequence	3709..3970																																									avrA	DAQPDN010000002.1	552739..553608	99.54	870	0						
GCA_033088935.1_PDT001954621.1_genomic.fna	Salmonella_enterica	0.5215	111.81 KB	15	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDP010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00823 isolate VISAVET_ZTA20_00823 SAMEA112357023-rid19964073.denovo.24, whole genome shotgun sequence	26575..27012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDP010000085.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00823 isolate VISAVET_ZTA20_00823 SAMEA112357023-rid19964073.guided.69, whole genome shotgun sequence	2373..2810	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDP010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00823 isolate VISAVET_ZTA20_00823 SAMEA112357023-rid19964073.denovo.60, whole genome shotgun sequence	2939..3581	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDP010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00823 isolate VISAVET_ZTA20_00823 SAMEA112357023-rid19964073.denovo.71, whole genome shotgun sequence	3413..3674																																																avrA	DAQPDP010000008.1	43841..44710	99.54	870	0						
GCA_033088955.1_PDT001954609.1_genomic.fna	Salmonella_enterica	0.5214	492.869 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00799 isolate VISAVET_ZTA20_00799 SAMEA112356999-rid19965083.denovo.01, whole genome shotgun sequence	553549..553986	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDO010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00799 isolate VISAVET_ZTA20_00799 SAMEA112356999-rid19965083.guided.25, whole genome shotgun sequence	3584..4021	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDO010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00799 isolate VISAVET_ZTA20_00799 SAMEA112356999-rid19965083.denovo.14, whole genome shotgun sequence	40561..41203	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDO010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00799 isolate VISAVET_ZTA20_00799 SAMEA112356999-rid19965083.denovo.22, whole genome shotgun sequence	3403..3664																																																avrA	DAQPDO010000002.1	553187..554056	99.54	870	0						
GCA_033088975.1_PDT001954602.1_genomic.fna	Salmonella_enterica	0.5212	158.374 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDQ010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.denovo.03, whole genome shotgun sequence	192976..193413	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	DAQPDQ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.denovo.29, whole genome shotgun sequence	37231..38022	Spectinomycin, Streptomycin	JX185132	aadA1	100	792/792	DAQPDQ010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.guided.36, whole genome shotgun sequence	7724..8515	Spectinomycin, Streptomycin	JX185132	aac(6')-Iaa	96.35	438/438	DAQPDQ010000060.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.guided.46, whole genome shotgun sequence	2199..2636	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	DAQPDQ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.denovo.29, whole genome shotgun sequence	38527..39366	Sulfamethoxazole	U12338	sul1	100	840/840	DAQPDQ010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.guided.36, whole genome shotgun sequence	9020..9859	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQPDQ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.denovo.29, whole genome shotgun sequence	51883..53082	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQPDQ010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.guided.36, whole genome shotgun sequence	22376..23575	Doxycycline, Tetracycline	AJ517790	dfrA1	99.79	474/474	DAQPDQ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.denovo.29, whole genome shotgun sequence	36665..37138	Trimethoprim	AF203818	dfrA1	99.79	474/474	DAQPDQ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.denovo.29, whole genome shotgun sequence	36665..37138	Trimethoprim	AJ238350	dfrA1	99.79	474/474	DAQPDQ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.denovo.29, whole genome shotgun sequence	36665..37138	Trimethoprim	X00926	dfrA1	99.79	474/474	DAQPDQ010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.guided.36, whole genome shotgun sequence	7158..7631	Trimethoprim	AF203818	dfrA1	99.79	474/474	DAQPDQ010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.guided.36, whole genome shotgun sequence	7158..7631	Trimethoprim	AJ238350	dfrA1	99.79	474/474	DAQPDQ010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.guided.36, whole genome shotgun sequence	7158..7631	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDQ010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.denovo.28, whole genome shotgun sequence	9588..10230	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDQ010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.denovo.28, whole genome shotgun sequence	54222..54483		enterobacteriales	IncX1	94.92	374 / 374	DAQPDQ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00785 isolate VISAVET_ZTA20_00785 SAMEA112356985-rid19962603.denovo.29, whole genome shotgun sequence	57286..57659																																									avrA	DAQPDQ010000005.1	115373..116242	99.54	870	0						
GCA_033088995.1_PDT001954579.1_genomic.fna	Salmonella_enterica	0.5213	171.199 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDS010000003.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00748 isolate VISAVET_ZTA20_00748 SAMEA112356948-rid19965053.denovo.03, whole genome shotgun sequence	44426..44863	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDS010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00748 isolate VISAVET_ZTA20_00748 SAMEA112356948-rid19965053.guided.44, whole genome shotgun sequence	558..995	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDS010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00748 isolate VISAVET_ZTA20_00748 SAMEA112356948-rid19965053.denovo.27, whole genome shotgun sequence	40383..41025	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDS010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00748 isolate VISAVET_ZTA20_00748 SAMEA112356948-rid19965053.denovo.35, whole genome shotgun sequence	3402..3663																																																avrA	DAQPDS010000001.1	553087..553956	99.54	870	0						
GCA_033089015.1_PDT001954582.1_genomic.fna	Salmonella_enterica	0.5214	375.806 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDT010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00751 isolate VISAVET_ZTA20_00751 SAMEA112356951-rid19962543.denovo.01, whole genome shotgun sequence	481649..482086	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDT010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00751 isolate VISAVET_ZTA20_00751 SAMEA112356951-rid19962543.guided.27, whole genome shotgun sequence	4501..4938	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDT010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00751 isolate VISAVET_ZTA20_00751 SAMEA112356951-rid19962543.denovo.15, whole genome shotgun sequence	40567..41209	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDT010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00751 isolate VISAVET_ZTA20_00751 SAMEA112356951-rid19962543.denovo.25, whole genome shotgun sequence	3395..3656																																																avrA	DAQPDT010000002.1	505839..506708	99.54	870	0						
GCA_033089035.1_PDT001954578.1_genomic.fna	Salmonella_enterica	0.5214	375.821 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00745 isolate VISAVET_ZTA20_00745 SAMEA112356945-rid19960983.denovo.01, whole genome shotgun sequence	52398..52835	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDV010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00745 isolate VISAVET_ZTA20_00745 SAMEA112356945-rid19960983.guided.29, whole genome shotgun sequence	2867..3304	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDV010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00745 isolate VISAVET_ZTA20_00745 SAMEA112356945-rid19960983.denovo.16, whole genome shotgun sequence	40526..41168	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDV010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00745 isolate VISAVET_ZTA20_00745 SAMEA112356945-rid19960983.denovo.25, whole genome shotgun sequence	3423..3684																																																avrA	DAQPDV010000002.1	505838..506707	99.54	870	0						
GCA_033089055.1_PDT001954576.1_genomic.fna	Salmonella_enterica	0.5215	230.29 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEA010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00320_1 isolate VISAVET_ZTA20_00320_1 SAMEA112356942-rid19962523.denovo.02, whole genome shotgun sequence	69669..70106	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEA010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00320_1 isolate VISAVET_ZTA20_00320_1 SAMEA112356942-rid19962523.guided.35, whole genome shotgun sequence	179..616	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEA010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00320_1 isolate VISAVET_ZTA20_00320_1 SAMEA112356942-rid19962523.denovo.23, whole genome shotgun sequence	48659..49301	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEA010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00320_1 isolate VISAVET_ZTA20_00320_1 SAMEA112356942-rid19962523.denovo.23, whole genome shotgun sequence	4406..4667																																																avrA	DAQPEA010000007.1	140720..141589	99.54	870	0						
GCA_033089075.1_PDT001954575.1_genomic.fna	Salmonella_enterica	0.5215	406.409 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDW010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00319 isolate VISAVET_ZTA20_00319 SAMEA112356941-rid19960973.denovo.01, whole genome shotgun sequence	733712..734149	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDW010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00319 isolate VISAVET_ZTA20_00319 SAMEA112356941-rid19960973.guided.29, whole genome shotgun sequence	3325..3762	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDW010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00319 isolate VISAVET_ZTA20_00319 SAMEA112356941-rid19960973.denovo.18, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDW010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00319 isolate VISAVET_ZTA20_00319 SAMEA112356941-rid19960973.denovo.24, whole genome shotgun sequence	3390..3651																																																avrA	DAQPDW010000008.1	115204..116073	99.54	870	0						
GCA_033089095.1_PDT001954574.1_genomic.fna	Salmonella_enterica	0.5213	489.746 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00318 isolate VISAVET_ZTA20_00318 SAMEA112356940-rid19963953.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDX010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00318 isolate VISAVET_ZTA20_00318 SAMEA112356940-rid19963953.guided.19, whole genome shotgun sequence	2696..3133	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDX010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00318 isolate VISAVET_ZTA20_00318 SAMEA112356940-rid19963953.denovo.14, whole genome shotgun sequence	48101..48743	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDX010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00318 isolate VISAVET_ZTA20_00318 SAMEA112356940-rid19963953.denovo.14, whole genome shotgun sequence	3849..4110																																																avrA	DAQPDX010000002.1	553075..553944	99.54	870	0						
GCA_033089115.1_PDT001954572.1_genomic.fna	Salmonella_enterica	0.5199	360.924 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEC010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00315 isolate VISAVET_ZTA20_00315 SAMEA112356937-rid19962513.denovo.01, whole genome shotgun sequence	124589..125026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEC010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00315 isolate VISAVET_ZTA20_00315 SAMEA112356937-rid19962513.guided.25, whole genome shotgun sequence	5291..5728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	DAQPEC010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00315 isolate VISAVET_ZTA20_00315 SAMEA112356937-rid19962513.denovo.30, whole genome shotgun sequence	4021..4151	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEC010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00315 isolate VISAVET_ZTA20_00315 SAMEA112356937-rid19962513.denovo.18, whole genome shotgun sequence	36511..37153		enterobacteriales	IncFII(S)	100	262 / 262	DAQPEC010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00315 isolate VISAVET_ZTA20_00315 SAMEA112356937-rid19962513.denovo.24, whole genome shotgun sequence	3423..3684																																									avrA	DAQPEC010000006.1	174784..175653	99.54	870	0						
GCA_033089135.1_PDT001954571.1_genomic.fna	Salmonella_enterica	0.5214	299.565 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDY010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00314_1 isolate VISAVET_ZTA20_00314_1 SAMEA112356935-rid19962503.denovo.18, whole genome shotgun sequence	17268..17705	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDY010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00314_1 isolate VISAVET_ZTA20_00314_1 SAMEA112356935-rid19962503.guided.34, whole genome shotgun sequence	2071..2508	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDY010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00314_1 isolate VISAVET_ZTA20_00314_1 SAMEA112356935-rid19962503.denovo.23, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	DAQPDY010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00314_1 isolate VISAVET_ZTA20_00314_1 SAMEA112356935-rid19962503.denovo.29, whole genome shotgun sequence	3410..3671																																																avrA	DAQPDY010000009.1	140720..141589	99.54	870	0						
GCA_033089155.1_PDT001954569.1_genomic.fna	Salmonella_enterica	0.5213	441.248 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00310 isolate VISAVET_ZTA20_00310 SAMEA112356931-rid19965043.denovo.01, whole genome shotgun sequence	162575..163012	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEB010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00310 isolate VISAVET_ZTA20_00310 SAMEA112356931-rid19965043.guided.24, whole genome shotgun sequence	1215..1652	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEB010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00310 isolate VISAVET_ZTA20_00310 SAMEA112356931-rid19965043.denovo.17, whole genome shotgun sequence	40507..41149	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEB010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00310 isolate VISAVET_ZTA20_00310 SAMEA112356931-rid19965043.denovo.20, whole genome shotgun sequence	3405..3666																																																avrA	DAQPEB010000002.1	553075..553944	99.54	870	0						
GCA_033089175.1_PDT001954570.1_genomic.fna	Salmonella_enterica	0.5209	489.999 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	Col(pHAD28),IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPDZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00312 isolate VISAVET_ZTA20_00312 SAMEA112356933-rid19960953.denovo.01, whole genome shotgun sequence	815094..815531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPDZ010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00312 isolate VISAVET_ZTA20_00312 SAMEA112356933-rid19960953.guided.23, whole genome shotgun sequence	1182..1619	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	93.13	131 / 131	DAQPDZ010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00312 isolate VISAVET_ZTA20_00312 SAMEA112356933-rid19960953.denovo.21, whole genome shotgun sequence	856..986	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPDZ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00312 isolate VISAVET_ZTA20_00312 SAMEA112356933-rid19960953.denovo.13, whole genome shotgun sequence	48332..48974		enterobacteriales	IncFII(S)	100	262 / 262	DAQPDZ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00312 isolate VISAVET_ZTA20_00312 SAMEA112356933-rid19960953.denovo.13, whole genome shotgun sequence	4079..4340		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQPDZ010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00312 isolate VISAVET_ZTA20_00312 SAMEA112356933-rid19960953.denovo.11, whole genome shotgun sequence	47059..47200																																		avrA	DAQPDZ010000002.1	553187..554056	99.54	870	0						
GCA_033089195.1_PDT001954567.1_genomic.fna	Salmonella_enterica	0.5213	353.229 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA17_01660_SM2 isolate VISAVET_ZTA17_01660_SM2 SAMEA112356903-rid19963943.denovo.01, whole genome shotgun sequence	48389..48826	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEF010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA17_01660_SM2 isolate VISAVET_ZTA17_01660_SM2 SAMEA112356903-rid19963943.guided.35, whole genome shotgun sequence	206..643	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEF010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA17_01660_SM2 isolate VISAVET_ZTA17_01660_SM2 SAMEA112356903-rid19963943.denovo.24, whole genome shotgun sequence	18141..18783	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEF010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA17_01660_SM2 isolate VISAVET_ZTA17_01660_SM2 SAMEA112356903-rid19963943.denovo.24, whole genome shotgun sequence	3402..3663																																																avrA	DAQPEF010000012.1	140715..141584	99.54	870	0						
GCA_033089215.1_PDT001954568.1_genomic.fna	Salmonella_enterica	0.522	91.835 KB	15	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEJ010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00309_2 isolate VISAVET_ZTA20_00309_2 SAMEA112356930-rid19960943.denovo.22, whole genome shotgun sequence	25604..26041	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEJ010000096.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00309_2 isolate VISAVET_ZTA20_00309_2 SAMEA112356930-rid19960943.guided.86, whole genome shotgun sequence	494..931	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEJ010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00309_2 isolate VISAVET_ZTA20_00309_2 SAMEA112356930-rid19960943.denovo.54, whole genome shotgun sequence	9043..9685	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEJ010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00309_2 isolate VISAVET_ZTA20_00309_2 SAMEA112356930-rid19960943.denovo.69, whole genome shotgun sequence	3395..3656																																																avrA	DAQPEJ010000011.1	99095..99964	99.54	870	0						
GCA_033089235.1_PDT001954564.1_genomic.fna	Salmonella_enterica	0.5215	178.398 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPED010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02954_4SR2 isolate VISAVET_ZTA16_02954_4SR2 SAMEA112356889-rid19963933.denovo.04, whole genome shotgun sequence	193098..193535	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPED010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02954_4SR2 isolate VISAVET_ZTA16_02954_4SR2 SAMEA112356889-rid19963933.denovo.33, whole genome shotgun sequence	9278..9920	enterobacteriales	IncFII(S)	100	262 / 262	DAQPED010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02954_4SR2 isolate VISAVET_ZTA16_02954_4SR2 SAMEA112356889-rid19963933.denovo.38, whole genome shotgun sequence	3390..3651																																																avrA	DAQPED010000003.1	149444..150313	99.54	870	0						
GCA_033089255.1_PDT001954566.1_genomic.fna	Salmonella_enterica	0.5214	349.232 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02991_4SR2 isolate VISAVET_ZTA16_02991_4SR2 SAMEA112356891-rid19962493.denovo.01, whole genome shotgun sequence	497378..497815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEH010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02991_4SR2 isolate VISAVET_ZTA16_02991_4SR2 SAMEA112356891-rid19962493.guided.27, whole genome shotgun sequence	5545..5982	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEH010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02991_4SR2 isolate VISAVET_ZTA16_02991_4SR2 SAMEA112356891-rid19962493.denovo.19, whole genome shotgun sequence	35713..36355	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEH010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02991_4SR2 isolate VISAVET_ZTA16_02991_4SR2 SAMEA112356891-rid19962493.denovo.26, whole genome shotgun sequence	3413..3674																																																avrA	DAQPEH010000004.1	149590..150459	99.54	870	0						
GCA_033089275.1_PDT001954562.1_genomic.fna	Salmonella_enterica	0.5215	187.421 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEE010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02392_1SR2 isolate VISAVET_ZTA16_02392_1SR2 SAMEA112356886-rid19962483.denovo.01, whole genome shotgun sequence	193776..194213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEE010000051.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02392_1SR2 isolate VISAVET_ZTA16_02392_1SR2 SAMEA112356886-rid19962483.guided.47, whole genome shotgun sequence	64..501	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEE010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02392_1SR2 isolate VISAVET_ZTA16_02392_1SR2 SAMEA112356886-rid19962483.denovo.28, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEE010000040.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA16_02392_1SR2 isolate VISAVET_ZTA16_02392_1SR2 SAMEA112356886-rid19962483.denovo.42, whole genome shotgun sequence	3395..3656																																																avrA	DAQPEE010000007.1	140720..141589	99.54	870	0						
GCA_033089295.1_PDT001954561.1_genomic.fna	Salmonella_enterica	0.5213	272.04 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA15_01880_2SR2 isolate VISAVET_ZTA15_01880_2SR2 SAMEA112356879-rid19962473.denovo.01, whole genome shotgun sequence	384251..384688	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEK010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA15_01880_2SR2 isolate VISAVET_ZTA15_01880_2SR2 SAMEA112356879-rid19962473.guided.32, whole genome shotgun sequence	335..772	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEK010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA15_01880_2SR2 isolate VISAVET_ZTA15_01880_2SR2 SAMEA112356879-rid19962473.denovo.23, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEK010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA15_01880_2SR2 isolate VISAVET_ZTA15_01880_2SR2 SAMEA112356879-rid19962473.denovo.30, whole genome shotgun sequence	3391..3652																																																avrA	DAQPEK010000008.1	140720..141589	99.54	870	0						
GCA_033089315.1_PDT001954556.1_genomic.fna	Salmonella_enterica	0.5215	250.384 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_02013_1SR2 isolate VISAVET_ZTA14_02013_1SR2 SAMEA112356866-rid19962453.denovo.01, whole genome shotgun sequence	223040..223477	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEG010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_02013_1SR2 isolate VISAVET_ZTA14_02013_1SR2 SAMEA112356866-rid19962453.guided.36, whole genome shotgun sequence	1972..2409	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEG010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_02013_1SR2 isolate VISAVET_ZTA14_02013_1SR2 SAMEA112356866-rid19962453.denovo.24, whole genome shotgun sequence	36664..37306	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEG010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_02013_1SR2 isolate VISAVET_ZTA14_02013_1SR2 SAMEA112356866-rid19962453.denovo.30, whole genome shotgun sequence	3859..4120																																																avrA	DAQPEG010000008.1	39488..40357	99.54	870	0						
GCA_033089335.1_PDT001954558.1_genomic.fna	Salmonella_enterica	0.5216	348.959 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEI010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA15_01025_SM1 isolate VISAVET_ZTA15_01025_SM1 SAMEA112356872-rid19960903.denovo.01, whole genome shotgun sequence	481497..481934	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEI010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA15_01025_SM1 isolate VISAVET_ZTA15_01025_SM1 SAMEA112356872-rid19960903.guided.26, whole genome shotgun sequence	2468..2905	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEI010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA15_01025_SM1 isolate VISAVET_ZTA15_01025_SM1 SAMEA112356872-rid19960903.denovo.16, whole genome shotgun sequence	40178..40820	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQPEI010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA15_01025_SM1 isolate VISAVET_ZTA15_01025_SM1 SAMEA112356872-rid19960903.denovo.22, whole genome shotgun sequence	9358..9617																																																avrA	DAQPEI010000004.1	173372..174241	99.54	870	0						
GCA_033089355.1_PDT001954550.1_genomic.fna	Salmonella_enterica	0.5215	111.078 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEM010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA13_01839_4SR2 isolate VISAVET_ZTA13_01839_4SR2 SAMEA112356858-rid19962433.denovo.45, whole genome shotgun sequence	14379..14816	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEM010000097.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA13_01839_4SR2 isolate VISAVET_ZTA13_01839_4SR2 SAMEA112356858-rid19962433.guided.66, whole genome shotgun sequence	1537..1974	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEM010000054.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA13_01839_4SR2 isolate VISAVET_ZTA13_01839_4SR2 SAMEA112356858-rid19962433.denovo.54, whole genome shotgun sequence	14526..15168	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEM010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA13_01839_4SR2 isolate VISAVET_ZTA13_01839_4SR2 SAMEA112356858-rid19962433.denovo.44, whole genome shotgun sequence	1759..2020																																																avrA	DAQPEM010000025.1	62051..62920	99.54	870	0						
GCA_033089375.1_PDT001954554.1_genomic.fna	Salmonella_enterica	0.5213	305.029 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_01623_2SK2 isolate VISAVET_ZTA14_01623_2SK2 SAMEA112356864-rid19963913.denovo.01, whole genome shotgun sequence	643686..644123	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEQ010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_01623_2SK2 isolate VISAVET_ZTA14_01623_2SK2 SAMEA112356864-rid19963913.guided.28, whole genome shotgun sequence	3778..4215	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEQ010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_01623_2SK2 isolate VISAVET_ZTA14_01623_2SK2 SAMEA112356864-rid19963913.denovo.19, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEQ010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_01623_2SK2 isolate VISAVET_ZTA14_01623_2SK2 SAMEA112356864-rid19963913.denovo.25, whole genome shotgun sequence	3349..3610																																																avrA	DAQPEQ010000007.1	140720..141589	99.54	870	0						
GCA_033089395.1_PDT001954537.1_genomic.fna	Salmonella_enterica	0.521	472.996 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(K),tet(K)	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),rep7a	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEL010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA10_02120_5CSR2 isolate VISAVET_ZTA10_02120_5CSR2 SAMEA112356828-rid19962383.denovo.07, whole genome shotgun sequence	62341..62778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEL010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA10_02120_5CSR2 isolate VISAVET_ZTA10_02120_5CSR2 SAMEA112356828-rid19962383.guided.20, whole genome shotgun sequence	948..1385	Amikacin, Tobramycin	NC_003197	tet(K)	99.82	1119/1380	DAQPEL010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA10_02120_5CSR2 isolate VISAVET_ZTA10_02120_5CSR2 SAMEA112356828-rid19962383.guided.24, whole genome shotgun sequence	1..1119	Doxycycline, Tetracycline	U38656	tet(K)	99.73	1119/1380	DAQPEL010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA10_02120_5CSR2 isolate VISAVET_ZTA10_02120_5CSR2 SAMEA112356828-rid19962383.guided.25, whole genome shotgun sequence	1..1119	Doxycycline, Tetracycline	U38656																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEL010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA10_02120_5CSR2 isolate VISAVET_ZTA10_02120_5CSR2 SAMEA112356828-rid19962383.denovo.15, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEL010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA10_02120_5CSR2 isolate VISAVET_ZTA10_02120_5CSR2 SAMEA112356828-rid19962383.denovo.17, whole genome shotgun sequence	3402..3663		Rep_trans	rep7a	100	500 / 570	DAQPEL010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA10_02120_5CSR2 isolate VISAVET_ZTA10_02120_5CSR2 SAMEA112356828-rid19962383.denovo.29, whole genome shotgun sequence	1..500	ORF(pKH1)																																								avrA	DAQPEL010000001.1	553075..553944	99.54	870	0						
GCA_033089415.1_PDT001954539.1_genomic.fna	Salmonella_enterica	0.5212	401.023 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPES010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA11_02201_5SR2 isolate VISAVET_ZTA11_02201_5SR2 SAMEA112356834-rid19963873.denovo.02, whole genome shotgun sequence	52022..52459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPES010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA11_02201_5SR2 isolate VISAVET_ZTA11_02201_5SR2 SAMEA112356834-rid19963873.guided.22, whole genome shotgun sequence	3801..4238	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPES010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA11_02201_5SR2 isolate VISAVET_ZTA11_02201_5SR2 SAMEA112356834-rid19963873.denovo.16, whole genome shotgun sequence	48112..48754	enterobacteriales	IncFII(S)	100	262 / 262	DAQPES010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA11_02201_5SR2 isolate VISAVET_ZTA11_02201_5SR2 SAMEA112356834-rid19963873.denovo.16, whole genome shotgun sequence	3859..4120																																																avrA	DAQPES010000007.1	140720..141589	99.54	870	0						
GCA_033089435.1_PDT001954536.1_genomic.fna	Salmonella_enterica	0.52	489.988 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(K),tet(K)	1	gyrA_p.D87Y	4	IncFIB(S),IncFII(S),IncX1,rep7a,rep7a	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA10_01443_1CSR2 isolate VISAVET_ZTA10_01443_1CSR2 SAMEA112356827-rid19962373.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEO010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA10_01443_1CSR2 isolate VISAVET_ZTA10_01443_1CSR2 SAMEA112356827-rid19962373.guided.18, whole genome shotgun sequence	7750..8187	Amikacin, Tobramycin	NC_003197	tet(K)	99.89	888/888	DAQPEO010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA10_01443_1CSR2 isolate VISAVET_ZTA10_01443_1CSR2 SAMEA112356827-rid19962373.denovo.21, whole genome shotgun sequence	2814..3700	Doxycycline, Tetracycline	J01764	tet(K)	100	1380/1380	DAQPEO010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA10_01443_1CSR2 isolate VISAVET_ZTA10_01443_1CSR2 SAMEA112356827-rid19962373.guided.23, whole genome shotgun sequence	966..2345	Doxycycline, Tetracycline	U38656																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEO010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA10_01443_1CSR2 isolate VISAVET_ZTA10_01443_1CSR2 SAMEA112356827-rid19962373.denovo.12, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEO010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA10_01443_1CSR2 isolate VISAVET_ZTA10_01443_1CSR2 SAMEA112356827-rid19962373.denovo.19, whole genome shotgun sequence	3429..3690		enterobacteriales	IncX1	99.47	377 / 377	DAQPEO010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA10_01443_1CSR2 isolate VISAVET_ZTA10_01443_1CSR2 SAMEA112356827-rid19962373.denovo.14, whole genome shotgun sequence	767..1143		Rep_trans	rep7a	100	945 / 945	DAQPEO010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA10_01443_1CSR2 isolate VISAVET_ZTA10_01443_1CSR2 SAMEA112356827-rid19962373.denovo.21, whole genome shotgun sequence	1708..2652	repC(Cassette)	Rep_trans	rep7a	100	750 / 750	DAQPEO010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA10_01443_1CSR2 isolate VISAVET_ZTA10_01443_1CSR2 SAMEA112356827-rid19962373.guided.23, whole genome shotgun sequence	55..804	repC(pS0385p1)																										avrA	DAQPEO010000002.1	553087..553956	99.54	870	0						
GCA_033089455.1_PDT001954533.1_genomic.fna	Salmonella_enterica	0.5204	406.409 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPER010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_02149_2CR2 isolate VISAVET_ZTA09_02149_2CR2 SAMEA112356820-rid19960843.denovo.01, whole genome shotgun sequence	383795..384232	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPER010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_02149_2CR2 isolate VISAVET_ZTA09_02149_2CR2 SAMEA112356820-rid19960843.guided.27, whole genome shotgun sequence	511..948	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPER010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_02149_2CR2 isolate VISAVET_ZTA09_02149_2CR2 SAMEA112356820-rid19960843.denovo.17, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	DAQPER010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_02149_2CR2 isolate VISAVET_ZTA09_02149_2CR2 SAMEA112356820-rid19960843.denovo.24, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	98.93	374 / 374	DAQPER010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_02149_2CR2 isolate VISAVET_ZTA09_02149_2CR2 SAMEA112356820-rid19960843.denovo.19, whole genome shotgun sequence	6654..7027																																									avrA	DAQPER010000002.1	506694..507563	99.54	870	0						
GCA_033089475.1_PDT001954535.1_genomic.fna	Salmonella_enterica	0.5207	489.987 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncI1-I(Alpha)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_04045_SM1 isolate VISAVET_ZTA09_04045_SM1 SAMEA112356824-rid19962363.denovo.01, whole genome shotgun sequence	815079..815516	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEN010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_04045_SM1 isolate VISAVET_ZTA09_04045_SM1 SAMEA112356824-rid19962363.guided.22, whole genome shotgun sequence	3151..3588	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	DAQPEN010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_04045_SM1 isolate VISAVET_ZTA09_04045_SM1 SAMEA112356824-rid19962363.denovo.10, whole genome shotgun sequence	81429..82574	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	DAQPEN010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_04045_SM1 isolate VISAVET_ZTA09_04045_SM1 SAMEA112356824-rid19962363.guided.18, whole genome shotgun sequence	2343..3488	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEN010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_04045_SM1 isolate VISAVET_ZTA09_04045_SM1 SAMEA112356824-rid19962363.denovo.13, whole genome shotgun sequence	9588..10230	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEN010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_04045_SM1 isolate VISAVET_ZTA09_04045_SM1 SAMEA112356824-rid19962363.denovo.19, whole genome shotgun sequence	3349..3610		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQPEN010000010.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_04045_SM1 isolate VISAVET_ZTA09_04045_SM1 SAMEA112356824-rid19962363.denovo.10, whole genome shotgun sequence	86912..87053																																									avrA	DAQPEN010000002.1	553007..553876	99.54	870	0						
GCA_033089495.1_PDT001954532.1_genomic.fna	Salmonella_enterica	0.5213	489.997 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_02131_SK1 isolate VISAVET_ZTA09_02131_SK1 SAMEA112356819-rid19962353.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEP010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_02131_SK1 isolate VISAVET_ZTA09_02131_SK1 SAMEA112356819-rid19962353.guided.20, whole genome shotgun sequence	618..1055	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEP010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_02131_SK1 isolate VISAVET_ZTA09_02131_SK1 SAMEA112356819-rid19962353.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEP010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_02131_SK1 isolate VISAVET_ZTA09_02131_SK1 SAMEA112356819-rid19962353.denovo.18, whole genome shotgun sequence	3395..3656																																																avrA	DAQPEP010000002.1	553075..553944	99.54	870	0						
GCA_033089515.1_PDT001954531.1_genomic.fna	Salmonella_enterica	0.5215	401.018 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPET010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_01701_3CSR2 isolate VISAVET_ZTA09_01701_3CSR2 SAMEA112356817-rid19960833.denovo.01, whole genome shotgun sequence	17207..17644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPET010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_01701_3CSR2 isolate VISAVET_ZTA09_01701_3CSR2 SAMEA112356817-rid19960833.guided.24, whole genome shotgun sequence	2166..2603	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPET010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_01701_3CSR2 isolate VISAVET_ZTA09_01701_3CSR2 SAMEA112356817-rid19960833.denovo.17, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	DAQPET010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_01701_3CSR2 isolate VISAVET_ZTA09_01701_3CSR2 SAMEA112356817-rid19960833.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	DAQPET010000003.1	174784..175653	99.54	870	0						
GCA_033089635.1_PDT001954620.1_genomic.fna	Salmonella_enterica	0.5213	406.409 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEZ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00820 isolate VISAVET_ZTA20_00820 SAMEA112357020-rid19960733.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEZ010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00820 isolate VISAVET_ZTA20_00820 SAMEA112357020-rid19960733.guided.26, whole genome shotgun sequence	407..844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEZ010000008.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00820 isolate VISAVET_ZTA20_00820 SAMEA112357020-rid19960733.denovo.08, whole genome shotgun sequence	181474..182116	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEZ010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00820 isolate VISAVET_ZTA20_00820 SAMEA112357020-rid19960733.denovo.21, whole genome shotgun sequence	3390..3651																																																avrA	DAQPEZ010000002.1	553083..553952	99.54	870	0						
GCA_033089655.1_PDT001954610.1_genomic.fna	Salmonella_enterica	0.5214	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00801 isolate VISAVET_ZTA20_00801 SAMEA112357001-rid19961113.denovo.01, whole genome shotgun sequence	814342..814779	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEU010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00801 isolate VISAVET_ZTA20_00801 SAMEA112357001-rid19961113.guided.27, whole genome shotgun sequence	95..532	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEU010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00801 isolate VISAVET_ZTA20_00801 SAMEA112357001-rid19961113.denovo.14, whole genome shotgun sequence	9588..10230	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEU010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00801 isolate VISAVET_ZTA20_00801 SAMEA112357001-rid19961113.denovo.14, whole genome shotgun sequence	54222..54483																																																avrA	DAQPEU010000002.1	553266..554135	99.54	870	0						
GCA_033089675.1_PDT001954635.1_genomic.fna	Salmonella_enterica	0.5202	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEX010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK272901S3AKIA1 SAMEA114028072-rid19961163.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEX010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK272901S3AKIA1 SAMEA114028072-rid19961163.guided.15, whole genome shotgun sequence	2347..2784	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEX010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK272901S3AKIA1 SAMEA114028072-rid19961163.denovo.14, whole genome shotgun sequence	48285..48927	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEX010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK272901S3AKIA1 SAMEA114028072-rid19961163.denovo.14, whole genome shotgun sequence	4032..4293		enterobacteriales	IncX1	98.4	374 / 374	DAQPEX010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK272901S3AKIA1 SAMEA114028072-rid19961163.denovo.17, whole genome shotgun sequence	34340..34713																																									avrA	DAQPEX010000002.1	553619..554488	99.54	870	0						
GCA_033089695.1_PDT001954624.1_genomic.fna	Salmonella_enterica	0.5213	341.96 KB	5	aroC_10,dnaN_7,hemD_12,hisD_9,purE_112,sucA_9,thrA_2	313	4:i:1,2	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	0		3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_112	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQPEW010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate C10533XXXX SAMEA114028044-rid19964083.denovo.02, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQPEW010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate C10533XXXX SAMEA114028044-rid19964083.guided.19, whole genome shotgun sequence	13792..14229	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQPEW010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate C10533XXXX SAMEA114028044-rid19964083.denovo.41, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQPEW010000056.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate C10533XXXX SAMEA114028044-rid19964083.guided.39, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	ColRNAI	90.08	131 / 130	DAQPEW010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate C10533XXXX SAMEA114028044-rid19964083.denovo.37, whole genome shotgun sequence	3981..4111	enterobacteriales	IncFIB(S)	100	643 / 643	DAQPEW010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate C10533XXXX SAMEA114028044-rid19964083.denovo.16, whole genome shotgun sequence	15098..15740		enterobacteriales	IncFII(S)	100	262 / 262	DAQPEW010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Typhimurium isolate C10533XXXX SAMEA114028044-rid19964083.denovo.16, whole genome shotgun sequence	30801..31062																																									avrA	DAQPEW010000001.1	452866..453735	99.885	870	0						
GCA_033089715.1_PDT001954583.1_genomic.fna	Salmonella_enterica	0.5214	478.751 KB	3	aroC_5,dnaN_580,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	3233	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_580	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00752 isolate VISAVET_ZTA20_00752 SAMEA112356952-rid19962553.denovo.01, whole genome shotgun sequence	774493..774930	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEV010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00752 isolate VISAVET_ZTA20_00752 SAMEA112356952-rid19962553.guided.23, whole genome shotgun sequence	811..1248	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEV010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00752 isolate VISAVET_ZTA20_00752 SAMEA112356952-rid19962553.denovo.13, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEV010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00752 isolate VISAVET_ZTA20_00752 SAMEA112356952-rid19962553.denovo.18, whole genome shotgun sequence	3392..3653																																																avrA	DAQPEV010000002.1	553633..554502	99.54	870	0						
GCA_033089835.1_PDT001954577.1_genomic.fna	Salmonella_enterica	0.5213	329.662 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFA010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00321_1 isolate VISAVET_ZTA20_00321_1 SAMEA112356943-rid19963963.denovo.02, whole genome shotgun sequence	151867..152304	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFA010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00321_1 isolate VISAVET_ZTA20_00321_1 SAMEA112356943-rid19963963.guided.34, whole genome shotgun sequence	1986..2423	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFA010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00321_1 isolate VISAVET_ZTA20_00321_1 SAMEA112356943-rid19963963.denovo.23, whole genome shotgun sequence	35157..35799	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFA010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00321_1 isolate VISAVET_ZTA20_00321_1 SAMEA112356943-rid19963963.denovo.27, whole genome shotgun sequence	3395..3656																																																avrA	DAQPFA010000010.1	141075..141944	99.54	870	0						
GCA_033089855.1_PDT001954580.1_genomic.fna	Salmonella_enterica	0.5222	401.108 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPEY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00749 isolate VISAVET_ZTA20_00749 SAMEA112356949-rid19960993.denovo.01, whole genome shotgun sequence	384428..384865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPEY010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00749 isolate VISAVET_ZTA20_00749 SAMEA112356949-rid19960993.guided.25, whole genome shotgun sequence	1862..2299	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPEY010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00749 isolate VISAVET_ZTA20_00749 SAMEA112356949-rid19960993.denovo.15, whole genome shotgun sequence	28741..29383	enterobacteriales	IncFII(S)	100	262 / 262	DAQPEY010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00749 isolate VISAVET_ZTA20_00749 SAMEA112356949-rid19960993.denovo.22, whole genome shotgun sequence	3404..3665																																																avrA	DAQPEY010000002.1	174827..175696	99.54	870	0						
GCA_033089895.1_PDT001954559.1_genomic.fna	Salmonella_enterica	0.5218	206.293 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFB010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA15_01568_1SR2 isolate VISAVET_ZTA15_01568_1SR2 SAMEA112356876-rid19963923.denovo.01, whole genome shotgun sequence	50921..51358	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFB010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA15_01568_1SR2 isolate VISAVET_ZTA15_01568_1SR2 SAMEA112356876-rid19963923.guided.58, whole genome shotgun sequence	939..1376	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFB010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA15_01568_1SR2 isolate VISAVET_ZTA15_01568_1SR2 SAMEA112356876-rid19963923.denovo.38, whole genome shotgun sequence	10292..10934	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFB010000044.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA15_01568_1SR2 isolate VISAVET_ZTA15_01568_1SR2 SAMEA112356876-rid19963923.denovo.46, whole genome shotgun sequence	3423..3684																																																avrA	DAQPFB010000007.1	140720..141589	99.54	870	0						
GCA_033089935.1_PDT001954552.1_genomic.fna	Salmonella_enterica	0.5216	113.746 KB	16	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	2:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	2	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFE010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_01520_2SR2 isolate VISAVET_ZTA14_01520_2SR2 SAMEA112356862-rid19962443.denovo.042, whole genome shotgun sequence	17217..17654	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFE010000111.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_01520_2SR2 isolate VISAVET_ZTA14_01520_2SR2 SAMEA112356862-rid19962443.guided.088, whole genome shotgun sequence	345..782	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFE010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_01520_2SR2 isolate VISAVET_ZTA14_01520_2SR2 SAMEA112356862-rid19962443.denovo.032, whole genome shotgun sequence	40549..41191	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFE010000075.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_01520_2SR2 isolate VISAVET_ZTA14_01520_2SR2 SAMEA112356862-rid19962443.denovo.075, whole genome shotgun sequence	3401..3662																																																avrA	DAQPFE010000008.1	140715..141584	99.54	870	0						
GCA_033089955.1_PDT001954557.1_genomic.fna	Salmonella_enterica	0.5213	228.794 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_02013_5SR2 isolate VISAVET_ZTA14_02013_5SR2 SAMEA112356867-rid19962463.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFD010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_02013_5SR2 isolate VISAVET_ZTA14_02013_5SR2 SAMEA112356867-rid19962463.guided.36, whole genome shotgun sequence	537..974	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFD010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_02013_5SR2 isolate VISAVET_ZTA14_02013_5SR2 SAMEA112356867-rid19962463.denovo.25, whole genome shotgun sequence	48112..48754	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFD010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA14_02013_5SR2 isolate VISAVET_ZTA14_02013_5SR2 SAMEA112356867-rid19962463.denovo.25, whole genome shotgun sequence	3859..4120																																																avrA	DAQPFD010000020.1	39488..40357	99.54	870	0						
GCA_033089995.1_PDT001954549.1_genomic.fna	Salmonella_enterica	0.5214	153.137 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFF010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA13_01834_5SR2 isolate VISAVET_ZTA13_01834_5SR2 SAMEA112356857-rid19963903.denovo.28, whole genome shotgun sequence	4985..5422	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFF010000069.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA13_01834_5SR2 isolate VISAVET_ZTA13_01834_5SR2 SAMEA112356857-rid19963903.guided.56, whole genome shotgun sequence	717..1154	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFF010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA13_01834_5SR2 isolate VISAVET_ZTA13_01834_5SR2 SAMEA112356857-rid19963903.denovo.27, whole genome shotgun sequence	48321..48963	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFF010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA13_01834_5SR2 isolate VISAVET_ZTA13_01834_5SR2 SAMEA112356857-rid19963903.denovo.27, whole genome shotgun sequence	4068..4329																																																avrA	DAQPFF010000005.1	115432..116301	99.54	870	0						
GCA_033090035.1_PDT001954548.1_genomic.fna	Salmonella_enterica	0.5216	155.192 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFC010000006.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA12_02278_3SK2 isolate VISAVET_ZTA12_02278_3SK2 SAMEA112356854-rid19960883.denovo.06, whole genome shotgun sequence	50976..51413	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFC010000059.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA12_02278_3SK2 isolate VISAVET_ZTA12_02278_3SK2 SAMEA112356854-rid19960883.guided.51, whole genome shotgun sequence	285..722	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFC010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA12_02278_3SK2 isolate VISAVET_ZTA12_02278_3SK2 SAMEA112356854-rid19960883.denovo.32, whole genome shotgun sequence	35883..36525	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFC010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA12_02278_3SK2 isolate VISAVET_ZTA12_02278_3SK2 SAMEA112356854-rid19960883.denovo.46, whole genome shotgun sequence	3413..3674																																																avrA	DAQPFC010000001.1	140720..141589	99.54	870	0						
GCA_033091735.1_PDT001954534.1_genomic.fna	Salmonella_enterica	0.5211	489.998 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),rep7a	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_03278_SR1 isolate VISAVET_ZTA09_03278_SR1 SAMEA112356822-rid19965033.denovo.01, whole genome shotgun sequence	815342..815779	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFK010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_03278_SR1 isolate VISAVET_ZTA09_03278_SR1 SAMEA112356822-rid19965033.guided.22, whole genome shotgun sequence	1407..1844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFK010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_03278_SR1 isolate VISAVET_ZTA09_03278_SR1 SAMEA112356822-rid19965033.denovo.14, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFK010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_03278_SR1 isolate VISAVET_ZTA09_03278_SR1 SAMEA112356822-rid19965033.denovo.14, whole genome shotgun sequence	4416..4677		Rep_trans	rep7a	100	539 / 570	DAQPFK010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_03278_SR1 isolate VISAVET_ZTA09_03278_SR1 SAMEA112356822-rid19965033.denovo.23, whole genome shotgun sequence	1544..2082	ORF(pKH1)																																								avrA	DAQPFK010000002.1	553075..553944	99.54	870	0						
GCA_033091755.1_PDT001954629.1_genomic.fna	Salmonella_enterica	0.521	480.706 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK017212S2AKIA3 SAMEA114028054-rid19964103.denovo.01, whole genome shotgun sequence	293259..293696	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFJ010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK017212S2AKIA3 SAMEA114028054-rid19964103.guided.14, whole genome shotgun sequence	44292..44729	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFJ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK017212S2AKIA3 SAMEA114028054-rid19964103.denovo.15, whole genome shotgun sequence	75458..76100	enterobacteriales	IncFII(S)	97.71	262 / 262	DAQPFJ010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis isolate KIK017212S2AKIA3 SAMEA114028054-rid19964103.denovo.15, whole genome shotgun sequence	3732..3991																																																avrA	DAQPFJ010000002.1	505015..505884	99.54	870	0						
GCA_033091765.1_PDT001954604.1_genomic.fna	Salmonella_enterica	0.5214	375.77 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFG010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00787 isolate VISAVET_ZTA20_00787 SAMEA112356987-rid19964013.denovo.02, whole genome shotgun sequence	192990..193427	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFG010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00787 isolate VISAVET_ZTA20_00787 SAMEA112356987-rid19964013.guided.28, whole genome shotgun sequence	4107..4544	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFG010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00787 isolate VISAVET_ZTA20_00787 SAMEA112356987-rid19964013.denovo.19, whole genome shotgun sequence	35850..36492	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFG010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00787 isolate VISAVET_ZTA20_00787 SAMEA112356987-rid19964013.denovo.25, whole genome shotgun sequence	3436..3697																																																avrA	DAQPFG010000001.1	553075..553944	99.54	870	0						
GCA_033091815.1_PDT001954591.1_genomic.fna	Salmonella_enterica	0.5213	439.031 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00762 isolate VISAVET_ZTA20_00762 SAMEA112356962-rid19962563.denovo.01, whole genome shotgun sequence	481589..482026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFH010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00762 isolate VISAVET_ZTA20_00762 SAMEA112356962-rid19962563.guided.22, whole genome shotgun sequence	39..476	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFH010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00762 isolate VISAVET_ZTA20_00762 SAMEA112356962-rid19962563.denovo.14, whole genome shotgun sequence	40522..41164	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFH010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00762 isolate VISAVET_ZTA20_00762 SAMEA112356962-rid19962563.denovo.18, whole genome shotgun sequence	3450..3711																																																avrA	DAQPFH010000002.1	553087..553956	99.54	870	0						
GCA_033091835.1_PDT001954530.1_genomic.fna	Salmonella_enterica	0.5213	489.833 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFM010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_01127_SM1 isolate VISAVET_ZTA09_01127_SM1 SAMEA112356813-rid19963863.denovo.02, whole genome shotgun sequence	14068..14505	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFM010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_01127_SM1 isolate VISAVET_ZTA09_01127_SM1 SAMEA112356813-rid19963863.guided.20, whole genome shotgun sequence	3232..3669	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFM010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_01127_SM1 isolate VISAVET_ZTA09_01127_SM1 SAMEA112356813-rid19963863.denovo.14, whole genome shotgun sequence	40539..41181	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFM010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_01127_SM1 isolate VISAVET_ZTA09_01127_SM1 SAMEA112356813-rid19963863.denovo.19, whole genome shotgun sequence	3403..3664																																																avrA	DAQPFM010000003.1	553247..554116	99.54	870	0						
GCA_033091855.1_PDT001954529.1_genomic.fna	Salmonella_enterica	0.5205	381.893 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_00896_4CSR2 isolate VISAVET_ZTA09_00896_4CSR2 SAMEA112356812-rid19963853.denovo.01, whole genome shotgun sequence	537144..537581	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFN010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_00896_4CSR2 isolate VISAVET_ZTA09_00896_4CSR2 SAMEA112356812-rid19963853.guided.31, whole genome shotgun sequence	1489..1926	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFN010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_00896_4CSR2 isolate VISAVET_ZTA09_00896_4CSR2 SAMEA112356812-rid19963853.denovo.18, whole genome shotgun sequence	40541..41183	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFN010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_00896_4CSR2 isolate VISAVET_ZTA09_00896_4CSR2 SAMEA112356812-rid19963853.denovo.28, whole genome shotgun sequence	3413..3674		enterobacteriales	IncX1	98.93	374 / 374	DAQPFN010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA09_00896_4CSR2 isolate VISAVET_ZTA09_00896_4CSR2 SAMEA112356812-rid19963853.denovo.21, whole genome shotgun sequence	6654..7027																																									avrA	DAQPFN010000002.1	505198..506067	99.54	870	0						
GCA_033091875.1_PDT001954525.1_genomic.fna	Salmonella_enterica	0.5203	269.341 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFU010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02107_1_CSK2 isolate VISAVET_VE08_02107_1_CSK2 SAMEA112356804-rid19962323.denovo.01, whole genome shotgun sequence	552280..552717	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.39	415/438	DAQPFU010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02107_1_CSK2 isolate VISAVET_VE08_02107_1_CSK2 SAMEA112356804-rid19962323.guided.34, whole genome shotgun sequence	2..416	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQPFU010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02107_1_CSK2 isolate VISAVET_VE08_02107_1_CSK2 SAMEA112356804-rid19962323.denovo.19, whole genome shotgun sequence	42212..43072	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQPFU010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02107_1_CSK2 isolate VISAVET_VE08_02107_1_CSK2 SAMEA112356804-rid19962323.guided.35, whole genome shotgun sequence	925..1785	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFU010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02107_1_CSK2 isolate VISAVET_VE08_02107_1_CSK2 SAMEA112356804-rid19962323.denovo.24, whole genome shotgun sequence	14661..15303	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFU010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02107_1_CSK2 isolate VISAVET_VE08_02107_1_CSK2 SAMEA112356804-rid19962323.denovo.30, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	99.47	377 / 377	DAQPFU010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02107_1_CSK2 isolate VISAVET_VE08_02107_1_CSK2 SAMEA112356804-rid19962323.denovo.19, whole genome shotgun sequence	767..1143																																									avrA	DAQPFU010000002.1	553075..553944	99.54	870	0						
GCA_033091895.1_PDT001954526.1_genomic.fna	Salmonella_enterica	0.5203	216.891 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02109_1CSR2 isolate VISAVET_VE08_02109_1CSR2 SAMEA112356806-rid19962333.denovo.01, whole genome shotgun sequence	151852..152289	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFP010000052.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02109_1CSR2 isolate VISAVET_VE08_02109_1CSR2 SAMEA112356806-rid19962333.guided.45, whole genome shotgun sequence	335..772	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQPFP010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02109_1CSR2 isolate VISAVET_VE08_02109_1CSR2 SAMEA112356806-rid19962333.denovo.25, whole genome shotgun sequence	42212..43072	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQPFP010000050.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02109_1CSR2 isolate VISAVET_VE08_02109_1CSR2 SAMEA112356806-rid19962333.guided.38, whole genome shotgun sequence	2994..3854	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFP010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02109_1CSR2 isolate VISAVET_VE08_02109_1CSR2 SAMEA112356806-rid19962333.denovo.26, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFP010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02109_1CSR2 isolate VISAVET_VE08_02109_1CSR2 SAMEA112356806-rid19962333.denovo.36, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	99.47	377 / 377	DAQPFP010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02109_1CSR2 isolate VISAVET_VE08_02109_1CSR2 SAMEA112356806-rid19962333.denovo.25, whole genome shotgun sequence	767..1143																																									avrA	DAQPFP010000008.1	140582..141451	99.54	870	0						
GCA_033091915.1_PDT001954527.1_genomic.fna	Salmonella_enterica	0.5201	165.607 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	3	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,lnu(A),lnu(A)	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFQ010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02112_1CSK2 isolate VISAVET_VE08_02112_1CSK2 SAMEA112356807-rid19962343.denovo.17, whole genome shotgun sequence	62375..62812	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFQ010000066.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02112_1CSK2 isolate VISAVET_VE08_02112_1CSK2 SAMEA112356807-rid19962343.guided.41, whole genome shotgun sequence	8698..9135	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQPFQ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02112_1CSK2 isolate VISAVET_VE08_02112_1CSK2 SAMEA112356807-rid19962343.denovo.33, whole genome shotgun sequence	40664..41524	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQPFQ010000068.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02112_1CSK2 isolate VISAVET_VE08_02112_1CSK2 SAMEA112356807-rid19962343.guided.54, whole genome shotgun sequence	1173..2033	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	lnu(A)	92.8	486/486	DAQPFQ010000053.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02112_1CSK2 isolate VISAVET_VE08_02112_1CSK2 SAMEA112356807-rid19962343.denovo.56, whole genome shotgun sequence	697..1182	Lincomycin	M14039	lnu(A)	92.8	486/486	DAQPFQ010000070.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02112_1CSK2 isolate VISAVET_VE08_02112_1CSK2 SAMEA112356807-rid19962343.guided.67, whole genome shotgun sequence	90..575	Lincomycin	M14039																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFQ010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02112_1CSK2 isolate VISAVET_VE08_02112_1CSK2 SAMEA112356807-rid19962343.denovo.32, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFQ010000043.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02112_1CSK2 isolate VISAVET_VE08_02112_1CSK2 SAMEA112356807-rid19962343.denovo.44, whole genome shotgun sequence	3390..3651		enterobacteriales	IncX1	99.47	377 / 377	DAQPFQ010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02112_1CSK2 isolate VISAVET_VE08_02112_1CSK2 SAMEA112356807-rid19962343.denovo.33, whole genome shotgun sequence	47399..47775																																									avrA	DAQPFQ010000005.1	140582..141451	99.54	870	0						
GCA_033091935.1_PDT001954523.1_genomic.fna	Salmonella_enterica	0.5214	269.363 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFO010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_01977_SM1 isolate VISAVET_VE08_01977_SM1 SAMEA112356801-rid19960813.denovo.02, whole genome shotgun sequence	51118..51555	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFO010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_01977_SM1 isolate VISAVET_VE08_01977_SM1 SAMEA112356801-rid19960813.guided.33, whole genome shotgun sequence	2287..2724	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFO010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_01977_SM1 isolate VISAVET_VE08_01977_SM1 SAMEA112356801-rid19960813.denovo.21, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFO010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_01977_SM1 isolate VISAVET_VE08_01977_SM1 SAMEA112356801-rid19960813.denovo.21, whole genome shotgun sequence	4416..4677																																																avrA	DAQPFO010000001.1	553074..553943	99.54	870	0						
GCA_033091955.1_PDT001954524.1_genomic.fna	Salmonella_enterica	0.5198	489.999 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFV010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02105_3_CSK2 isolate VISAVET_VE08_02105_3_CSK2 SAMEA112356802-rid19965023.denovo.01, whole genome shotgun sequence	815099..815536	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFV010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02105_3_CSK2 isolate VISAVET_VE08_02105_3_CSK2 SAMEA112356802-rid19965023.guided.10, whole genome shotgun sequence	44276..44713	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQPFV010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02105_3_CSK2 isolate VISAVET_VE08_02105_3_CSK2 SAMEA112356802-rid19965023.denovo.14, whole genome shotgun sequence	42212..43072	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQPFV010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02105_3_CSK2 isolate VISAVET_VE08_02105_3_CSK2 SAMEA112356802-rid19965023.guided.19, whole genome shotgun sequence	3945..4805	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFV010000011.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02105_3_CSK2 isolate VISAVET_VE08_02105_3_CSK2 SAMEA112356802-rid19965023.denovo.13, whole genome shotgun sequence	40543..41185	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFV010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02105_3_CSK2 isolate VISAVET_VE08_02105_3_CSK2 SAMEA112356802-rid19965023.denovo.17, whole genome shotgun sequence	3402..3663		enterobacteriales	IncX1	99.47	377 / 377	DAQPFV010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_02105_3_CSK2 isolate VISAVET_VE08_02105_3_CSK2 SAMEA112356802-rid19965023.denovo.14, whole genome shotgun sequence	767..1143																																									avrA	DAQPFV010000002.1	553075..553944	99.54	870	0						
GCA_033091975.1_PDT001954522.1_genomic.fna	Salmonella_enterica	0.5214	161.562 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFT010000007.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_01612_SM1 isolate VISAVET_VE08_01612_SM1 SAMEA112356799-rid19963843.denovo.07, whole genome shotgun sequence	15412..15849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFT010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_01612_SM1 isolate VISAVET_VE08_01612_SM1 SAMEA112356799-rid19963843.denovo.27, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFT010000039.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE08_01612_SM1 isolate VISAVET_VE08_01612_SM1 SAMEA112356799-rid19963843.denovo.39, whole genome shotgun sequence	3388..3649																																																avrA	DAQPFT010000002.1	140720..141589	99.54	870	0						
GCA_033091995.1_PDT001954521.1_genomic.fna	Salmonella_enterica	0.5213	489.999 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFS010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE07_05208_SM1 isolate VISAVET_VE07_05208_SM1 SAMEA112356795-rid19960803.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFS010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE07_05208_SM1 isolate VISAVET_VE07_05208_SM1 SAMEA112356795-rid19960803.guided.20, whole genome shotgun sequence	1521..1958	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFS010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE07_05208_SM1 isolate VISAVET_VE07_05208_SM1 SAMEA112356795-rid19960803.denovo.12, whole genome shotgun sequence	48659..49301	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFS010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_VE07_05208_SM1 isolate VISAVET_VE07_05208_SM1 SAMEA112356795-rid19960803.denovo.12, whole genome shotgun sequence	4406..4667																																																avrA	DAQPFS010000002.1	553181..554050	99.54	870	0						
GCA_033092015.1_PDT001954520.1_genomic.fna	Salmonella_enterica	0.5207	514.028 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_60,sucA_6,thrA_11	183	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(K),tet(K),tet(K),tet(K)	0		2	IncFII(S),rep7a	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_60	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Gallinarum or Enteritidis	Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis was not detected. The predicted serotypes share the same general formula: 9:g,m:- and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFR010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM11_00126_2SM1 isolate VISAVET_DICM11_00126_2SM1 SAMEA112356785-rid19963833.denovo.01, whole genome shotgun sequence	479925..480362	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFR010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM11_00126_2SM1 isolate VISAVET_DICM11_00126_2SM1 SAMEA112356785-rid19963833.guided.19, whole genome shotgun sequence	14824..15261	Amikacin, Tobramycin	NC_003197	tet(K)	99.93	1380/1380	DAQPFR010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM11_00126_2SM1 isolate VISAVET_DICM11_00126_2SM1 SAMEA112356785-rid19963833.denovo.24, whole genome shotgun sequence	1921..3300	Doxycycline, Tetracycline	U38656	tet(K)	99.93	1380/1380	DAQPFR010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM11_00126_2SM1 isolate VISAVET_DICM11_00126_2SM1 SAMEA112356785-rid19963833.guided.25, whole genome shotgun sequence	50..1429	Doxycycline, Tetracycline	U38656	tet(K)	99.86	1380/1380	DAQPFR010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM11_00126_2SM1 isolate VISAVET_DICM11_00126_2SM1 SAMEA112356785-rid19963833.guided.26, whole genome shotgun sequence	50..1429	Doxycycline, Tetracycline	U38656	tet(K)	99.78	1380/1380	DAQPFR010000036.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM11_00126_2SM1 isolate VISAVET_DICM11_00126_2SM1 SAMEA112356785-rid19963833.guided.27, whole genome shotgun sequence	50..1429	Doxycycline, Tetracycline	U38656																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFII(S)	97.71	262 / 262	DAQPFR010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM11_00126_2SM1 isolate VISAVET_DICM11_00126_2SM1 SAMEA112356785-rid19963833.denovo.14, whole genome shotgun sequence	8593..8852	Rep_trans	rep7a	100	750 / 750	DAQPFR010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM11_00126_2SM1 isolate VISAVET_DICM11_00126_2SM1 SAMEA112356785-rid19963833.denovo.31, whole genome shotgun sequence	22..771	repC(pS0385p1)																																															avrA	DAQPFR010000003.1	523023..523892	99.54	870	0						
GCA_033092035.1_PDT001954517.1_genomic.fna	Salmonella_enterica	0.5214	438.954 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPFY010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM09_00292_2SM1 isolate VISAVET_DICM09_00292_2SM1 SAMEA112356782-rid19963813.denovo.01, whole genome shotgun sequence	733675..734112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPFY010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM09_00292_2SM1 isolate VISAVET_DICM09_00292_2SM1 SAMEA112356782-rid19963813.guided.25, whole genome shotgun sequence	337..774	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPFY010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM09_00292_2SM1 isolate VISAVET_DICM09_00292_2SM1 SAMEA112356782-rid19963813.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	DAQPFY010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM09_00292_2SM1 isolate VISAVET_DICM09_00292_2SM1 SAMEA112356782-rid19963813.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	DAQPFY010000002.1	553505..554374	99.54	870	0						
GCA_033092055.1_PDT001954519.1_genomic.fna	Salmonella_enterica	0.5215	261.676 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPGA010000002.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM09_00297_2SM1 isolate VISAVET_DICM09_00297_2SM1 SAMEA112356784-rid19963823.denovo.02, whole genome shotgun sequence	52174..52611	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.3	433/438	DAQPGA010000042.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM09_00297_2SM1 isolate VISAVET_DICM09_00297_2SM1 SAMEA112356784-rid19963823.guided.40, whole genome shotgun sequence	961..1393	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPGA010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM09_00297_2SM1 isolate VISAVET_DICM09_00297_2SM1 SAMEA112356784-rid19963823.denovo.24, whole genome shotgun sequence	14655..15297	enterobacteriales	IncFII(S)	100	262 / 262	DAQPGA010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_DICM09_00297_2SM1 isolate VISAVET_DICM09_00297_2SM1 SAMEA112356784-rid19963823.denovo.29, whole genome shotgun sequence	3299..3560																																																avrA	DAQPGA010000001.1	553505..554374	99.54	870	0						
GCA_033092095.1_PDT001954200.1_genomic.fna	Salmonella_enterica	0.5221	360.359 KB	3	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_746	3848	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_746	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOKHS010000001.1 Salmonella enterica strain PNUSAS395733 SAMN37997136-rid19957343.denovo.01, whole genome shotgun sequence	750320..750757	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOKHS010000029.1 Salmonella enterica strain PNUSAS395733 SAMN37997136-rid19957343.guided.23, whole genome shotgun sequence	2696..3133	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOKHS010000015.1 Salmonella enterica strain PNUSAS395733 SAMN37997136-rid19957343.denovo.15, whole genome shotgun sequence	6323..6856																																																						avrA	ABOKHS010000005.1	94167..95036	99.54	870	0						
GCA_033092115.1_PDT001954199.1_genomic.fna	Salmonella_enterica	0.5223	235.895 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKHT010000002.1 Salmonella enterica strain PNUSAS395735 SAMN37997134-rid19957333.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKHT010000047.1 Salmonella enterica strain PNUSAS395735 SAMN37997134-rid19957333.guided.34, whole genome shotgun sequence	2336..2773	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOKHT010000023.1 Salmonella enterica strain PNUSAS395735 SAMN37997134-rid19957333.denovo.23, whole genome shotgun sequence	44738..45380	enterobacteriales	IncFII(S)	100	262 / 262	ABOKHT010000023.1 Salmonella enterica strain PNUSAS395735 SAMN37997134-rid19957333.denovo.23, whole genome shotgun sequence	29392..29653																																																avrA	ABOKHT010000001.1	446736..447604	100	869	0						
GCA_033092175.1_PDT001954198.1_genomic.fna	Salmonella_enterica	0.5216	399.297 KB	5	aroC_189,dnaN_70,hemD_152,hisD_132,purE_34,sucA_9,thrA_172	872	13:f,g:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_189	dnaN	100	100	dnaN_70	hemD	100	100	hemD_152	hisD	100	100	hisD_132	purE	100	100	purE_34	sucA	100	100	sucA_9	thrA	100	100	thrA_172	13	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Havana		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOKHU010000001.1 Salmonella enterica strain PNUSAS395732 SAMN37997137-rid19958313.denovo.01, whole genome shotgun sequence	116871..117308	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOKHU010000028.1 Salmonella enterica strain PNUSAS395732 SAMN37997137-rid19958313.guided.21, whole genome shotgun sequence	7823..8260	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKHU010000002.1	140087..140956	99.54	870	0						
GCA_033092465.1_PDT001954581.1_genomic.fna	Salmonella_enterica	0.5212	489.737 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPGM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00750 isolate VISAVET_ZTA20_00750 SAMEA112356950-rid19962533.denovo.01, whole genome shotgun sequence	815308..815745	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPGM010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00750 isolate VISAVET_ZTA20_00750 SAMEA112356950-rid19962533.denovo.13, whole genome shotgun sequence	40557..41199	enterobacteriales	IncFII(S)	100	262 / 262	DAQPGM010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00750 isolate VISAVET_ZTA20_00750 SAMEA112356950-rid19962533.denovo.20, whole genome shotgun sequence	3418..3679																																																avrA	DAQPGM010000002.1	505553..506422	99.54	870	0						
GCA_033092475.1_PDT001954540.1_genomic.fna	Salmonella_enterica	0.5213	406.409 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),rep21	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPGN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA11_02576_3SR2 isolate VISAVET_ZTA11_02576_3SR2 SAMEA112356836-rid19963883.denovo.01, whole genome shotgun sequence	644878..645315	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPGN010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA11_02576_3SR2 isolate VISAVET_ZTA11_02576_3SR2 SAMEA112356836-rid19963883.guided.26, whole genome shotgun sequence	550..987	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPGN010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA11_02576_3SR2 isolate VISAVET_ZTA11_02576_3SR2 SAMEA112356836-rid19963883.denovo.16, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	DAQPGN010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA11_02576_3SR2 isolate VISAVET_ZTA11_02576_3SR2 SAMEA112356836-rid19963883.denovo.22, whole genome shotgun sequence	3413..3674		Rep1	rep21	98.41	1006 / 1005	DAQPGN010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA11_02576_3SR2 isolate VISAVET_ZTA11_02576_3SR2 SAMEA112356836-rid19963883.denovo.27, whole genome shotgun sequence	603..1607	rep(pLNU3)																																								avrA	DAQPGN010000002.1	553187..554056	99.54	870	0						
GCA_033092545.1_PDT001954612.1_genomic.fna	Salmonella_enterica	0.5205	375.803 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1D,blaTEM-1D	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPGK010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00803 isolate VISAVET_ZTA20_00803 SAMEA112357003-rid19962633.denovo.04, whole genome shotgun sequence	192953..193390	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPGK010000046.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00803 isolate VISAVET_ZTA20_00803 SAMEA112357003-rid19962633.guided.41, whole genome shotgun sequence	499..936	Amikacin, Tobramycin	NC_003197	blaTEM-1D	100	861/861	DAQPGK010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00803 isolate VISAVET_ZTA20_00803 SAMEA112357003-rid19962633.denovo.22, whole genome shotgun sequence	89..949	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AF188200	blaTEM-1D	100	861/861	DAQPGK010000045.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00803 isolate VISAVET_ZTA20_00803 SAMEA112357003-rid19962633.guided.38, whole genome shotgun sequence	130..990	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AF188200																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPGK010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00803 isolate VISAVET_ZTA20_00803 SAMEA112357003-rid19962633.denovo.21, whole genome shotgun sequence	35911..36553	enterobacteriales	IncFII(S)	100	262 / 262	DAQPGK010000031.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00803 isolate VISAVET_ZTA20_00803 SAMEA112357003-rid19962633.denovo.32, whole genome shotgun sequence	3436..3697		enterobacteriales	IncX1	98.94	377 / 377	DAQPGK010000022.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00803 isolate VISAVET_ZTA20_00803 SAMEA112357003-rid19962633.denovo.22, whole genome shotgun sequence	7104..7480																																									avrA	DAQPGK010000001.1	553069..553938	99.54	870	0						
GCA_033092565.1_PDT001954196.1_genomic.fna	Salmonella_enterica	0.5207	425.835 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOKHW010000001.1 Salmonella enterica strain PNUSAS395710 SAMN37996687-rid19957313.denovo.01, whole genome shotgun sequence	253103..253540	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOKHW010000036.1 Salmonella enterica strain PNUSAS395710 SAMN37996687-rid19957313.guided.27, whole genome shotgun sequence	6053..6490	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033092585.1_PDT001954197.1_genomic.fna	Salmonella_enterica	0.5217	192.093 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_110,sucA_9,thrA_2	302	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_110	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKHX010000001.1 Salmonella enterica strain PNUSAS395711 SAMN37996688-rid19957323.denovo.01, whole genome shotgun sequence	207030..207467	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKHX010000093.1 Salmonella enterica strain PNUSAS395711 SAMN37996688-rid19957323.guided.36, whole genome shotgun sequence	20997..21434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOKHX010000045.1 Salmonella enterica strain PNUSAS395711 SAMN37996688-rid19957323.denovo.48, whole genome shotgun sequence	459..1101	enterobacteriales	IncFII(S)	100	262 / 262	ABOKHX010000059.1 Salmonella enterica strain PNUSAS395711 SAMN37996688-rid19957323.denovo.62, whole genome shotgun sequence	1371..1632																																																avrA	ABOKHX010000005.1	165837..166706	99.885	870	0						
GCA_033094085.1_PDT001954014.1_genomic.fna	Salmonella_enterica	0.5195	374.935 KB	6	aroC_41,dnaN_332,hemD_79,hisD_625,purE_28,sucA_14,thrA_96*	Unknown	16:k:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_332	hemD	100	100	hemD_79	hisD	100	100	hisD_625	purE	100	100	purE_28	sucA	100	100	sucA_14	thrA	99.8003992015968	100	thrA_96*	16	k	1,6	Salmonella enterica subspecies enterica (subspecies I)	Maumee		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	DAQPJG010000001.1 TPA_asm: Salmonella enterica strain U6A2 SAMN37050966-rid19956003.denovo.01, whole genome shotgun sequence	613786..614223	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	DAQPJG010000053.1 TPA_asm: Salmonella enterica strain U6A2 SAMN37050966-rid19956003.guided.12, whole genome shotgun sequence	42412..42849	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.22	643 / 643	DAQPJG010000013.1 TPA_asm: Salmonella enterica strain U6A2 SAMN37050966-rid19956003.denovo.14, whole genome shotgun sequence	109072..109714	enterobacteriales	IncFII(pMET)	90.58	584 / 577	DAQPJG010000025.1 TPA_asm: Salmonella enterica strain U6A2 SAMN37050966-rid19956003.denovo.28, whole genome shotgun sequence	18873..19455																																																avrA	DAQPJG010000002.1	505370..506239	99.54	870	0						
GCA_033099245.1_PDT001955281.1_genomic.fna	Salmonella_enterica	0.5213	160.379 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPPY010000001.1 TPA_asm: Salmonella enterica strain YA00473555 SAMEA114526794-rid19967533.denovo.01, whole genome shotgun sequence	4993..5430	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQPPY010000065.1 TPA_asm: Salmonella enterica strain YA00473555 SAMEA114526794-rid19967533.guided.58, whole genome shotgun sequence	858..1295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPPY010000066.1 TPA_asm: Salmonella enterica strain YA00473555 SAMEA114526794-rid19967533.guided.59, whole genome shotgun sequence	858..1295	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																							enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPPY010000028.1 TPA_asm: Salmonella enterica strain YA00473555 SAMEA114526794-rid19967533.denovo.28, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	DAQPPY010000028.1 TPA_asm: Salmonella enterica strain YA00473555 SAMEA114526794-rid19967533.denovo.28, whole genome shotgun sequence	5032..5293																																																avrA	DAQPPY010000017.1	28822..29691	99.54	870	0						
GCA_033099285.1_PDT001955279.1_genomic.fna	Salmonella_enterica	0.5223	121.41 KB	13	aroC_2,dnaN_5,hemD_116,hisD_88,purE_5,sucA_7,thrA_12	473	8:z10:e,n,x	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col156	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_116	hisD	100	100	hisD_88	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	DAQPPZ010000004.1 TPA_asm: Salmonella enterica strain YA00472474 SAMEA114526783-rid19967523.denovo.04, whole genome shotgun sequence	96910..97347	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	DAQPPZ010000087.1 TPA_asm: Salmonella enterica strain YA00472474 SAMEA114526783-rid19967523.guided.59, whole genome shotgun sequence	2284..2721	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	DAQPPZ010000067.1 TPA_asm: Salmonella enterica strain YA00472474 SAMEA114526783-rid19967523.denovo.69, whole genome shotgun sequence	2167..2811	Ciprofloxacin	EU432277	qnrB19	100	645/645	DAQPPZ010000089.1 TPA_asm: Salmonella enterica strain YA00472474 SAMEA114526783-rid19967523.guided.70, whole genome shotgun sequence	545..1189	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	DAQPPZ010000067.1 TPA_asm: Salmonella enterica strain YA00472474 SAMEA114526783-rid19967523.denovo.69, whole genome shotgun sequence	1511..1641	enterobacteriales	Col156	97.37	152 / 154	DAQPPZ010000063.1 TPA_asm: Salmonella enterica strain YA00472474 SAMEA114526783-rid19967523.denovo.64, whole genome shotgun sequence	957..1108																																																avrA	DAQPPZ010000025.1	39546..40415	99.655	870	0						
GCA_033099305.1_PDT001955276.1_genomic.fna	Salmonella_enterica	0.5209	172.14 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,qnrS1,qnrS1,tet(A),tet(A),dfrA14,dfrA14,dfrA14	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPQA010000017.1 TPA_asm: Salmonella enterica strain YA00472472 SAMEA114526776-rid19966763.denovo.17, whole genome shotgun sequence	4994..5431	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.88	816/816	DAQPQA010000034.1 TPA_asm: Salmonella enterica strain YA00472472 SAMEA114526776-rid19966763.denovo.34, whole genome shotgun sequence	26953..27768	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	EF015636	aac(6')-Iaa	96.35	438/438	DAQPQA010000062.1 TPA_asm: Salmonella enterica strain YA00472472 SAMEA114526776-rid19966763.guided.52, whole genome shotgun sequence	1051..1488	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	99.88	816/816	DAQPQA010000066.1 TPA_asm: Salmonella enterica strain YA00472472 SAMEA114526776-rid19966763.guided.57, whole genome shotgun sequence	148..963	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin	EF015636	qnrS1	100	657/657	DAQPQA010000043.1 TPA_asm: Salmonella enterica strain YA00472472 SAMEA114526776-rid19966763.denovo.43, whole genome shotgun sequence	6868..7524	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQPQA010000065.1 TPA_asm: Salmonella enterica strain YA00472472 SAMEA114526776-rid19966763.guided.56, whole genome shotgun sequence	1055..1711	Ciprofloxacin	AB187515	tet(A)	99.92	1200/1200	DAQPQA010000043.1 TPA_asm: Salmonella enterica strain YA00472472 SAMEA114526776-rid19966763.denovo.43, whole genome shotgun sequence	1014..2213	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	DAQPQA010000064.1 TPA_asm: Salmonella enterica strain YA00472472 SAMEA114526776-rid19966763.guided.54, whole genome shotgun sequence	637..1836	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	DAQPQA010000051.1 TPA_asm: Salmonella enterica strain YA00472472 SAMEA114526776-rid19966763.denovo.60, whole genome shotgun sequence	251..724	Trimethoprim	KF921535	dfrA14	100	474/474	DAQPQA010000067.1 TPA_asm: Salmonella enterica strain YA00472472 SAMEA114526776-rid19966763.guided.58, whole genome shotgun sequence	1199..1672	Trimethoprim	KF921535	dfrA14	99.79	474/474	DAQPQA010000068.1 TPA_asm: Salmonella enterica strain YA00472472 SAMEA114526776-rid19966763.guided.59, whole genome shotgun sequence	1199..1672	Trimethoprim	KF921535																																																																																																																																																																																																																																																																																																																																																																																																															enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPQA010000029.1 TPA_asm: Salmonella enterica strain YA00472472 SAMEA114526776-rid19966763.denovo.29, whole genome shotgun sequence	42591..43233	enterobacteriales	IncFII(S)	100	262 / 262	DAQPQA010000044.1 TPA_asm: Salmonella enterica strain YA00472472 SAMEA114526776-rid19966763.denovo.46, whole genome shotgun sequence	1342..1603		enterobacteriales	IncX1	98.93	374 / 374	DAQPQA010000034.1 TPA_asm: Salmonella enterica strain YA00472472 SAMEA114526776-rid19966763.denovo.34, whole genome shotgun sequence	6018..6391																																									avrA	DAQPQA010000001.1	60945..61814	99.54	870	0						
GCA_033099325.1_PDT001955269.1_genomic.fna	Salmonella_enterica	0.5214	160.625 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPQC010000027.1 TPA_asm: Salmonella enterica strain YA00473344 SAMEA114526761-rid19967463.denovo.27, whole genome shotgun sequence	4998..5435	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPQC010000063.1 TPA_asm: Salmonella enterica strain YA00473344 SAMEA114526761-rid19967463.guided.53, whole genome shotgun sequence	1142..1579	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPQC010000025.1 TPA_asm: Salmonella enterica strain YA00473344 SAMEA114526761-rid19967463.denovo.25, whole genome shotgun sequence	48474..49116	enterobacteriales	IncFII(S)	100	262 / 262	DAQPQC010000025.1 TPA_asm: Salmonella enterica strain YA00473344 SAMEA114526761-rid19967463.denovo.25, whole genome shotgun sequence	4221..4482																																																avrA	DAQPQC010000001.1	553033..553902	99.54	870	0						
GCA_033099365.1_PDT001955274.1_genomic.fna	Salmonella_enterica	0.5214	126.257 KB	13	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPQB010000016.1 TPA_asm: Salmonella enterica strain YA00473554 SAMEA114526771-rid19966753.denovo.16, whole genome shotgun sequence	4999..5436	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.34	437/438	DAQPQB010000067.1 TPA_asm: Salmonella enterica strain YA00473554 SAMEA114526771-rid19966753.guided.60, whole genome shotgun sequence	1..437	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPQB010000031.1 TPA_asm: Salmonella enterica strain YA00473554 SAMEA114526771-rid19966753.denovo.31, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	DAQPQB010000031.1 TPA_asm: Salmonella enterica strain YA00473554 SAMEA114526771-rid19966753.denovo.31, whole genome shotgun sequence	5032..5293																																																avrA	DAQPQB010000018.1	28822..29691	99.54	870	0						
GCA_033099385.1_PDT001955251.1_genomic.fna	Salmonella_enterica	0.5213	152.259 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87G	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPQE010000017.1 TPA_asm: Salmonella enterica strain YA00473340 SAMEA114526728-rid19967353.denovo.17, whole genome shotgun sequence	4994..5431	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPQE010000072.1 TPA_asm: Salmonella enterica strain YA00473340 SAMEA114526728-rid19967353.guided.59, whole genome shotgun sequence	902..1339	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87G	GAC -> GGC	D -> G	Nalidixic Acid, Ciprofloxacin	11283069																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPQE010000049.1 TPA_asm: Salmonella enterica strain YA00473340 SAMEA114526728-rid19967353.denovo.49, whole genome shotgun sequence	6157..6799	enterobacteriales	IncFII(S)	100	262 / 262	DAQPQE010000051.1 TPA_asm: Salmonella enterica strain YA00473340 SAMEA114526728-rid19967353.denovo.51, whole genome shotgun sequence	1777..2038																																																avrA	DAQPQE010000028.1	28822..29691	99.54	870	0						
GCA_033099405.1_PDT001955234.1_genomic.fna	Salmonella_enterica	0.5206	269.151 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPQD010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00816 isolate VISAVET_ZTA20_00816 SAMEA112357016-rid19967253.denovo.01, whole genome shotgun sequence	291802..292239	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPQD010000041.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00816 isolate VISAVET_ZTA20_00816 SAMEA112357016-rid19967253.guided.39, whole genome shotgun sequence	44..481	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPQD010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00816 isolate VISAVET_ZTA20_00816 SAMEA112357016-rid19967253.denovo.19, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	DAQPQD010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00816 isolate VISAVET_ZTA20_00816 SAMEA112357016-rid19967253.denovo.30, whole genome shotgun sequence	3324..3585		enterobacteriales	IncX1	98.93	374 / 374	DAQPQD010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00816 isolate VISAVET_ZTA20_00816 SAMEA112357016-rid19967253.denovo.21, whole genome shotgun sequence	6654..7027																																									avrA	DAQPQD010000004.1	174784..175653	99.54	870	0						
GCA_033099425.1_PDT001955232.1_genomic.fna	Salmonella_enterica	0.5213	406.409 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPQF010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00812 isolate VISAVET_ZTA20_00812 SAMEA112357012-rid19967233.denovo.01, whole genome shotgun sequence	815198..815635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPQF010000027.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00812 isolate VISAVET_ZTA20_00812 SAMEA112357012-rid19967233.guided.22, whole genome shotgun sequence	3175..3612	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPQF010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00812 isolate VISAVET_ZTA20_00812 SAMEA112357012-rid19967233.denovo.16, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	DAQPQF010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00812 isolate VISAVET_ZTA20_00812 SAMEA112357012-rid19967233.denovo.21, whole genome shotgun sequence	3397..3658																																																avrA	DAQPQF010000002.1	553217..554086	99.54	870	0						
GCA_033099445.1_PDT001955229.1_genomic.fna	Salmonella_enterica	0.5206	339.106 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aadA1,aac(6')-Iaa,aadA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	0		4	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPQH010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.denovo.01, whole genome shotgun sequence	178014..178451	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	DAQPQH010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.denovo.17, whole genome shotgun sequence	33370..34161	Spectinomycin, Streptomycin	JX185132	aac(6')-Iaa	96.35	438/438	DAQPQH010000034.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.guided.29, whole genome shotgun sequence	1325..1762	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	DAQPQH010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.guided.35, whole genome shotgun sequence	242..1033	Spectinomycin, Streptomycin	JX185132	sul1	100	840/840	DAQPQH010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.denovo.17, whole genome shotgun sequence	34666..35505	Sulfamethoxazole	U12338	sul1	100	840/840	DAQPQH010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.guided.31, whole genome shotgun sequence	449..1288	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQPQH010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.denovo.17, whole genome shotgun sequence	48022..49221	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQPQH010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.guided.26, whole genome shotgun sequence	1898..3097	Doxycycline, Tetracycline	AJ517790	dfrA1	99.79	474/474	DAQPQH010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.denovo.17, whole genome shotgun sequence	32804..33277	Trimethoprim	AF203818	dfrA1	99.79	474/474	DAQPQH010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.denovo.17, whole genome shotgun sequence	32804..33277	Trimethoprim	AJ238350	dfrA1	99.79	474/474	DAQPQH010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.denovo.17, whole genome shotgun sequence	32804..33277	Trimethoprim	X00926	dfrA1	99.79	474/474	DAQPQH010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.guided.36, whole genome shotgun sequence	39..512	Trimethoprim	AF203818	dfrA1	99.79	474/474	DAQPQH010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.guided.36, whole genome shotgun sequence	39..512	Trimethoprim	AJ238350	dfrA1	99.79	474/474	DAQPQH010000038.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.guided.36, whole genome shotgun sequence	39..512	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPQH010000019.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.denovo.19, whole genome shotgun sequence	40525..41167	enterobacteriales	IncFII(S)	100	262 / 262	DAQPQH010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.denovo.24, whole genome shotgun sequence	3324..3585		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	DAQPQH010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.denovo.15, whole genome shotgun sequence	80050..80191		enterobacteriales	IncX1	94.92	374 / 374	DAQPQH010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00809 isolate VISAVET_ZTA20_00809 SAMEA112357009-rid19967213.denovo.17, whole genome shotgun sequence	53425..53798																																		avrA	DAQPQH010000002.1	553363..554232	99.54	870	0						
GCA_033099465.1_PDT001955231.1_genomic.fna	Salmonella_enterica	0.5214	477.414 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPQG010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00811 isolate VISAVET_ZTA20_00811 SAMEA112357011-rid19967223.denovo.01, whole genome shotgun sequence	504973..505410	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPQG010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00811 isolate VISAVET_ZTA20_00811 SAMEA112357011-rid19967223.guided.30, whole genome shotgun sequence	29..466	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPQG010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00811 isolate VISAVET_ZTA20_00811 SAMEA112357011-rid19967223.denovo.14, whole genome shotgun sequence	35935..36577	enterobacteriales	IncFII(S)	100	262 / 262	DAQPQG010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00811 isolate VISAVET_ZTA20_00811 SAMEA112357011-rid19967223.denovo.20, whole genome shotgun sequence	5032..5293																																																avrA	DAQPQG010000002.1	553426..554295	99.54	870	0						
GCA_033099485.1_PDT001955226.1_genomic.fna	Salmonella_enterica	0.5209	284.254 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	1	gyrA_p.S83F	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPQI010000004.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.denovo.04, whole genome shotgun sequence	17681..18118	Amikacin, Tobramycin	NC_003197	aadA1	100	792/792	DAQPQI010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.denovo.18, whole genome shotgun sequence	33370..34161	Spectinomycin, Streptomycin	JX185132	aadA1	100	792/792	DAQPQI010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.guided.26, whole genome shotgun sequence	7303..8094	Spectinomycin, Streptomycin	JX185132	aac(6')-Iaa	96.35	438/438	DAQPQI010000037.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.guided.37, whole genome shotgun sequence	582..1019	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	DAQPQI010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.denovo.18, whole genome shotgun sequence	34666..35505	Sulfamethoxazole	U12338	sul1	100	840/840	DAQPQI010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.guided.26, whole genome shotgun sequence	8599..9438	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	DAQPQI010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.denovo.18, whole genome shotgun sequence	48022..49221	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	DAQPQI010000035.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.guided.33, whole genome shotgun sequence	1839..3038	Doxycycline, Tetracycline	AJ517790	dfrA1	99.79	474/474	DAQPQI010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.denovo.18, whole genome shotgun sequence	32804..33277	Trimethoprim	AF203818	dfrA1	99.79	474/474	DAQPQI010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.denovo.18, whole genome shotgun sequence	32804..33277	Trimethoprim	AJ238350	dfrA1	99.79	474/474	DAQPQI010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.denovo.18, whole genome shotgun sequence	32804..33277	Trimethoprim	X00926	dfrA1	99.79	474/474	DAQPQI010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.guided.26, whole genome shotgun sequence	6737..7210	Trimethoprim	AF203818	dfrA1	99.79	474/474	DAQPQI010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.guided.26, whole genome shotgun sequence	6737..7210	Trimethoprim	AJ238350	dfrA1	99.79	474/474	DAQPQI010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.guided.26, whole genome shotgun sequence	6737..7210	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																						gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPQI010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.denovo.21, whole genome shotgun sequence	35832..36474	enterobacteriales	IncFII(S)	100	262 / 262	DAQPQI010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.denovo.27, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	94.92	374 / 374	DAQPQI010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00804 isolate VISAVET_ZTA20_00804 SAMEA112357004-rid19967203.denovo.18, whole genome shotgun sequence	53425..53798																																									avrA	DAQPQI010000002.1	553178..554047	99.54	870	0						
GCA_033099505.1_PDT001955221.1_genomic.fna	Salmonella_enterica	0.5213	490 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPQM010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00793 isolate VISAVET_ZTA20_00793 SAMEA112356993-rid19967183.denovo.01, whole genome shotgun sequence	774497..774934	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPQM010000023.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00793 isolate VISAVET_ZTA20_00793 SAMEA112356993-rid19967183.guided.19, whole genome shotgun sequence	126..563	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	DAQPQM010000002.1	553630..554499	99.54	870	0						
GCA_033099525.1_PDT001955224.1_genomic.fna	Salmonella_enterica	0.5213	489.748 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPQJ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00797 isolate VISAVET_ZTA20_00797 SAMEA112356997-rid19966703.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPQJ010000025.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00797 isolate VISAVET_ZTA20_00797 SAMEA112356997-rid19966703.guided.20, whole genome shotgun sequence	1207..1644	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPQJ010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00797 isolate VISAVET_ZTA20_00797 SAMEA112356997-rid19966703.denovo.12, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	DAQPQJ010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00797 isolate VISAVET_ZTA20_00797 SAMEA112356997-rid19966703.denovo.17, whole genome shotgun sequence	3395..3656																																																avrA	DAQPQJ010000002.1	553081..553950	99.54	870	0						
GCA_033099545.1_PDT001955222.1_genomic.fna	Salmonella_enterica	0.5211	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPQK010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00795 isolate VISAVET_ZTA20_00795 SAMEA112356995-rid19967193.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPQK010000026.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00795 isolate VISAVET_ZTA20_00795 SAMEA112356995-rid19967193.guided.22, whole genome shotgun sequence	1706..2143	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPQK010000014.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00795 isolate VISAVET_ZTA20_00795 SAMEA112356995-rid19967193.denovo.14, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	DAQPQK010000017.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00795 isolate VISAVET_ZTA20_00795 SAMEA112356995-rid19967193.denovo.18, whole genome shotgun sequence	3423..3684																																																avrA	DAQPQK010000002.1	553093..553962	99.54	870	0						
GCA_033099565.1_PDT001955219.1_genomic.fna	Salmonella_enterica	0.5203	489.745 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1D,blaTEM-1D	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPQL010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00789 isolate VISAVET_ZTA20_00789 SAMEA112356989-rid19967173.denovo.01, whole genome shotgun sequence	545733..546170	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPQL010000033.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00789 isolate VISAVET_ZTA20_00789 SAMEA112356989-rid19967173.guided.26, whole genome shotgun sequence	2373..2810	Amikacin, Tobramycin	NC_003197	blaTEM-1D	100	861/861	DAQPQL010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00789 isolate VISAVET_ZTA20_00789 SAMEA112356989-rid19967173.denovo.16, whole genome shotgun sequence	91..951	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AF188200	blaTEM-1D	100	861/861	DAQPQL010000032.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00789 isolate VISAVET_ZTA20_00789 SAMEA112356989-rid19967173.guided.24, whole genome shotgun sequence	132..992	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AF188200																																																																																																																																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPQL010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00789 isolate VISAVET_ZTA20_00789 SAMEA112356989-rid19967173.denovo.15, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	DAQPQL010000021.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00789 isolate VISAVET_ZTA20_00789 SAMEA112356989-rid19967173.denovo.23, whole genome shotgun sequence	3446..3707		enterobacteriales	IncX1	98.94	377 / 377	DAQPQL010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00789 isolate VISAVET_ZTA20_00789 SAMEA112356989-rid19967173.denovo.16, whole genome shotgun sequence	7106..7482																																									avrA	DAQPQL010000002.1	553075..553944	99.54	870	0						
GCA_033099585.1_PDT001955207.1_genomic.fna	Salmonella_enterica	0.5213	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPQO010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00764 isolate VISAVET_ZTA20_00764 SAMEA112356964-rid19967123.denovo.01, whole genome shotgun sequence	539163..539600	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPQO010000028.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00764 isolate VISAVET_ZTA20_00764 SAMEA112356964-rid19967123.guided.25, whole genome shotgun sequence	898..1335	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPQO010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00764 isolate VISAVET_ZTA20_00764 SAMEA112356964-rid19967123.denovo.16, whole genome shotgun sequence	40541..41183	enterobacteriales	IncFII(S)	100	262 / 262	DAQPQO010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00764 isolate VISAVET_ZTA20_00764 SAMEA112356964-rid19967123.denovo.20, whole genome shotgun sequence	3395..3656																																																avrA	DAQPQO010000002.1	553084..553953	99.54	870	0						
GCA_033099605.1_PDT001955216.1_genomic.fna	Salmonella_enterica	0.5212	489.627 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPQN010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00782 isolate VISAVET_ZTA20_00782 SAMEA112356982-rid19967163.denovo.01, whole genome shotgun sequence	814342..814779	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQPQN010000024.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00782 isolate VISAVET_ZTA20_00782 SAMEA112356982-rid19967163.guided.20, whole genome shotgun sequence	69..506	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPQN010000012.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00782 isolate VISAVET_ZTA20_00782 SAMEA112356982-rid19967163.denovo.12, whole genome shotgun sequence	40576..41218	enterobacteriales	IncFII(S)	100	262 / 262	DAQPQN010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00782 isolate VISAVET_ZTA20_00782 SAMEA112356982-rid19967163.denovo.17, whole genome shotgun sequence	3446..3707																																																avrA	DAQPQN010000002.1	553254..554123	99.54	870	0						
GCA_033099625.1_PDT001955206.1_genomic.fna	Salmonella_enterica	0.5204	366.422 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	3	aac(6')-Iaa,blaTEM-1B,blaTEM-1B,qnrS1,qnrS1	1	gyrA_p.D87Y	3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQPQP010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00763 isolate VISAVET_ZTA20_00763 SAMEA112356963-rid19967113.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	DAQPQP010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00763 isolate VISAVET_ZTA20_00763 SAMEA112356963-rid19967113.denovo.16, whole genome shotgun sequence	38136..38996	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQPQP010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00763 isolate VISAVET_ZTA20_00763 SAMEA112356963-rid19967113.guided.24, whole genome shotgun sequence	2612..3472	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrS1	100	657/657	DAQPQP010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00763 isolate VISAVET_ZTA20_00763 SAMEA112356963-rid19967113.denovo.16, whole genome shotgun sequence	32118..32774	Ciprofloxacin	AB187515	qnrS1	100	657/657	DAQPQP010000030.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00763 isolate VISAVET_ZTA20_00763 SAMEA112356963-rid19967113.guided.26, whole genome shotgun sequence	688..1344	Ciprofloxacin	AB187515																																																																																																																																																																																																																																																																																																																																																																																																																																					gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPQP010000015.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00763 isolate VISAVET_ZTA20_00763 SAMEA112356963-rid19967113.denovo.15, whole genome shotgun sequence	40558..41200	enterobacteriales	IncFII(S)	100	262 / 262	DAQPQP010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00763 isolate VISAVET_ZTA20_00763 SAMEA112356963-rid19967113.denovo.21, whole genome shotgun sequence	3404..3665		enterobacteriales	IncX1	98.93	374 / 374	DAQPQP010000016.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00763 isolate VISAVET_ZTA20_00763 SAMEA112356963-rid19967113.denovo.16, whole genome shotgun sequence	45547..45920																																									avrA	DAQPQP010000002.1	553087..553956	99.54	870	0						
GCA_033103365.1_PDT001954587.1_genomic.fna	Salmonella_enterica	0.5214	435.356 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	DAQPQQ010000001.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00757 isolate VISAVET_ZTA20_00757 SAMEA112356957-rid19963983.denovo.01, whole genome shotgun sequence	815096..815533	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQPQQ010000029.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00757 isolate VISAVET_ZTA20_00757 SAMEA112356957-rid19963983.guided.26, whole genome shotgun sequence	1938..2375	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	90.84	131 / 131	DAQPQQ010000020.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00757 isolate VISAVET_ZTA20_00757 SAMEA112356957-rid19963983.denovo.21, whole genome shotgun sequence	3852..3982	enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQPQQ010000013.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00757 isolate VISAVET_ZTA20_00757 SAMEA112356957-rid19963983.denovo.13, whole genome shotgun sequence	40525..41167		enterobacteriales	IncFII(S)	100	262 / 262	DAQPQQ010000018.1 TPA_asm: Salmonella enterica subsp. enterica serovar Enteritidis strain VISAVET_ZTA20_00757 isolate VISAVET_ZTA20_00757 SAMEA112356957-rid19963983.denovo.19, whole genome shotgun sequence	3395..3656																																									avrA	DAQPQQ010000002.1	553360..554229	99.54	870	0						
GCA_033108405.1_PDT001960805.1_genomic.fna	Salmonella_enterica	0.5223	456.858 KB	4	aroC_10,dnaN_436,hemD_46,hisD_126,purE_25,sucA_872,thrA_22	Unknown	11:k:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_436	hemD	100	100	hemD_46	hisD	100	100	hisD_126	purE	100	100	purE_25	sucA	100	100	sucA_872	thrA	100	100	thrA_22	11	k	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Kisarawe		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQQAE010000004.1 TPA_asm: Salmonella enterica strain YA00435449 SAMEA114538332-rid20005423.denovo.04, whole genome shotgun sequence	207925..208362	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQQAE010000036.1 TPA_asm: Salmonella enterica strain YA00435449 SAMEA114538332-rid20005423.guided.23, whole genome shotgun sequence	9224..9661	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	DAQQAE010000010.1	94952..95821	99.425	870	0						
GCA_033111075.1_PDT001955560.1_genomic.fna	Salmonella_enterica	0.5209	518.428 KB	3	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOKID010000001.1 Salmonella enterica strain PNUSAS394324 SAMN38016028-rid19966913.denovo.01, whole genome shotgun sequence	779768..780205	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOKID010000023.1 Salmonella enterica strain PNUSAS394324 SAMN38016028-rid19966913.guided.16, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOKID010000018.1 Salmonella enterica strain PNUSAS394324 SAMN38016028-rid19966913.denovo.21, whole genome shotgun sequence	239..369																																																						avrA	ABOKID010000004.1	409500..410369	99.425	870	0						
GCA_033111115.1_PDT001955413.1_genomic.fna	Salmonella_enterica	0.5206	804.361 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKIK010000002.1 Salmonella enterica strain PNUSAS395778 SAMN38015999-rid19968263.denovo.02, whole genome shotgun sequence	236090..236527	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKIK010000042.1 Salmonella enterica strain PNUSAS395778 SAMN38015999-rid19968263.guided.18, whole genome shotgun sequence	14404..14841	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKIK010000004.1	140050..140920	99.656	871	0						
GCA_033111135.1_PDT001955414.1_genomic.fna	Salmonella_enterica	0.5206	401.518 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOKII010000001.1 Salmonella enterica strain PNUSAS395848 SAMN38016014-rid19968273.denovo.01, whole genome shotgun sequence	771552..771989	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOKII010000028.1 Salmonella enterica strain PNUSAS395848 SAMN38016014-rid19968273.guided.23, whole genome shotgun sequence	4907..5344	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOKII010000022.1 Salmonella enterica strain PNUSAS395848 SAMN38016014-rid19968273.denovo.25, whole genome shotgun sequence	239..369																																																						avrA	ABOKII010000007.1	140114..140983	99.425	870	0						
GCA_033111175.1_PDT001955406.1_genomic.fna	Salmonella_enterica	0.5203	470.316 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKIM010000001.1 Salmonella enterica strain PNUSAS395770 SAMN38015986-rid19966883.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKIM010000028.1 Salmonella enterica strain PNUSAS395770 SAMN38015986-rid19966883.guided.16, whole genome shotgun sequence	29747..30184	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKIM010000016.1 Salmonella enterica strain PNUSAS395770 SAMN38015986-rid19966883.denovo.17, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOKIM010000016.1 Salmonella enterica strain PNUSAS395770 SAMN38015986-rid19966883.denovo.17, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABOKIM010000017.1 Salmonella enterica strain PNUSAS395770 SAMN38015986-rid19966883.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABOKIM010000007.1	175109..175978	99.54	870	0						
GCA_033111195.1_PDT001955408.1_genomic.fna	Salmonella_enterica	0.5224	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKIL010000001.1 Salmonella enterica strain PNUSAS395775 SAMN38015989-rid19966893.denovo.01, whole genome shotgun sequence	790282..790719	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKIL010000027.1 Salmonella enterica strain PNUSAS395775 SAMN38015989-rid19966893.guided.17, whole genome shotgun sequence	14365..14802	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKIL010000002.1	127356..128225	98.966	870	0						
GCA_033111205.1_PDT001955405.1_genomic.fna	Salmonella_enterica	0.5227	616.928 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKIN010000001.1 Salmonella enterica strain PNUSAS395771 SAMN38015987-rid19968223.denovo.01, whole genome shotgun sequence	573961..574398	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKIN010000031.1 Salmonella enterica strain PNUSAS395771 SAMN38015987-rid19968223.guided.18, whole genome shotgun sequence	39600..40037	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKIN010000003.1	149551..150420	99.655	870	0						
GCA_033111225.1_PDT001955404.1_genomic.fna	Salmonella_enterica	0.5211	504.66 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKIO010000001.1 Salmonella enterica strain PNUSAS395781 SAMN38015990-rid19968213.denovo.01, whole genome shotgun sequence	477373..477810	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKIO010000027.1 Salmonella enterica strain PNUSAS395781 SAMN38015990-rid19968213.guided.19, whole genome shotgun sequence	13793..14230	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKIO010000002.1	551516..552385	99.195	870	0						
GCA_033111255.1_PDT001955400.1_genomic.fna	Salmonella_enterica	0.5219	207.445 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKIQ010000002.1 Salmonella enterica strain PNUSAS395777 SAMN38015996-rid19968183.denovo.02, whole genome shotgun sequence	145343..145780	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKIQ010000047.1 Salmonella enterica strain PNUSAS395777 SAMN38015996-rid19968183.guided.42, whole genome shotgun sequence	381..818	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKIQ010000003.1	208058..208926	99.77	870	0						
GCA_033111275.1_PDT001955402.1_genomic.fna	Salmonella_enterica	0.5143	193.297 KB	9	aroC_225,dnaN_25,hemD_29,hisD_487,purE_48,sucA_209,thrA_27	3554	56:z4,z23:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_225	dnaN	100	100	dnaN_25	hemD	100	100	hemD_29	hisD	100	100	hisD_487	purE	100	100	purE_48	sucA	100	100	sucA_209	thrA	100	100	thrA_27	56	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 56:z4,z23:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033111335.1_PDT001955395.1_genomic.fna	Salmonella_enterica	0.5208	418.767 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKIT010000002.1 Salmonella enterica strain PNUSAS395782 SAMN38015997-rid19968173.denovo.02, whole genome shotgun sequence	383335..383772	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKIT010000032.1 Salmonella enterica strain PNUSAS395782 SAMN38015997-rid19968173.guided.22, whole genome shotgun sequence	13835..14272	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKIT010000001.1	504044..504912	99.195	870	0						
GCA_033123685.1_PDT001958006.1_genomic.fna	Salmonella_enterica	0.5218	736.879 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKIU010000001.1 Salmonella enterica strain PNUSAS312354 SAMN38022370-rid19992303.denovo.01, whole genome shotgun sequence	645040..645477	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKIU010000019.1 Salmonella enterica strain PNUSAS312354 SAMN38022370-rid19992303.guided.11, whole genome shotgun sequence	10356..10793	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKIU010000002.1	561253..562123	99.656	871	0						
GCA_033123765.1_PDT001957998.1_genomic.fna	Salmonella_enterica	0.5215	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKIY010000001.1 Salmonella enterica strain PNUSAS396245 SAMN38020804-rid19992243.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKIY010000025.1 Salmonella enterica strain PNUSAS396245 SAMN38020804-rid19992243.guided.18, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKIY010000013.1 Salmonella enterica strain PNUSAS396245 SAMN38020804-rid19992243.denovo.13, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOKIY010000013.1 Salmonella enterica strain PNUSAS396245 SAMN38020804-rid19992243.denovo.13, whole genome shotgun sequence	5032..5293																																																avrA	ABOKIY010000002.1	553636..554505	99.54	870	0						
GCA_033123785.1_PDT001957996.1_genomic.fna	Salmonella_enterica	0.5207	155.026 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOKJA010000009.1 Salmonella enterica strain PNUSAS396246 SAMN38020802-rid19992233.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOKJA010000055.1 Salmonella enterica strain PNUSAS396246 SAMN38020802-rid19992233.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033123805.1_PDT001957997.1_genomic.fna	Salmonella_enterica	0.5205	400.834 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKIZ010000006.1 Salmonella enterica strain PNUSAS396250 SAMN38020806-rid19991243.denovo.06, whole genome shotgun sequence	74815..75252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKIZ010000032.1 Salmonella enterica strain PNUSAS396250 SAMN38020806-rid19991243.guided.16, whole genome shotgun sequence	20551..20988	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABOKIZ010000020.1 Salmonella enterica strain PNUSAS396250 SAMN38020806-rid19991243.denovo.23, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOKIZ010000017.1 Salmonella enterica strain PNUSAS396250 SAMN38020806-rid19991243.denovo.19, whole genome shotgun sequence	3823..4084		enterobacteriales	IncX1	98.66	374 / 374	ABOKIZ010000021.1 Salmonella enterica strain PNUSAS396250 SAMN38020806-rid19991243.denovo.24, whole genome shotgun sequence	4078..4451																																									avrA	ABOKIZ010000001.1	552776..553645	99.54	870	0						
GCA_033123825.1_PDT001957994.1_genomic.fna	Salmonella_enterica	0.5199	301.288 KB	7	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOKJC010000001.1 Salmonella enterica strain PNUSAS396247 SAMN38020803-rid19992213.denovo.01, whole genome shotgun sequence	346944..347381	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOKJC010000036.1 Salmonella enterica strain PNUSAS396247 SAMN38020803-rid19992213.guided.20, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKJC010000007.1	150797..151666	99.54	870	0						
GCA_033123865.1_PDT001957992.1_genomic.fna	Salmonella_enterica	0.521	593.789 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKJE010000001.1 Salmonella enterica strain PNUSAS396242 SAMN38020800-rid19991233.denovo.01, whole genome shotgun sequence	602451..602888	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKJE010000033.1 Salmonella enterica strain PNUSAS396242 SAMN38020800-rid19991233.guided.10, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKJE010000003.1	553438..554307	99.655	870	0						
GCA_033123885.1_PDT001957993.1_genomic.fna	Salmonella_enterica	0.5205	162.8 KB	10	aroC_1,dnaN_1,hemD_2,hisD_1,purE_1,sucA_1,thrA_5	2	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_2	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	ABOKJD010000010.1 Salmonella enterica strain PNUSAS396244 SAMN38020807-rid19992203.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	ABOKJD010000065.1 Salmonella enterica strain PNUSAS396244 SAMN38020807-rid19992203.guided.42, whole genome shotgun sequence	8076..8510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033123905.1_PDT001957991.1_genomic.fna	Salmonella_enterica	0.5213	489.665 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKJF010000001.1 Salmonella enterica strain PNUSAS396248 SAMN38020801-rid19992193.denovo.01, whole genome shotgun sequence	293258..293695	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKJF010000026.1 Salmonella enterica strain PNUSAS396248 SAMN38020801-rid19992193.guided.20, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKJF010000019.1 Salmonella enterica strain PNUSAS396248 SAMN38020801-rid19992193.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOKJF010000010.1 Salmonella enterica strain PNUSAS396248 SAMN38020801-rid19992193.denovo.10, whole genome shotgun sequence	129854..130115																																																avrA	ABOKJF010000002.1	583737..584606	99.54	870	0						
GCA_033123925.1_PDT001957986.1_genomic.fna	Salmonella_enterica	0.5214	132.183 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQRBM010000031.1 TPA_asm: Salmonella enterica strain YA00473369 SAMEA114526793-rid19992153.denovo.31, whole genome shotgun sequence	4996..5433	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQRBM010000067.1 TPA_asm: Salmonella enterica strain YA00473369 SAMEA114526793-rid19992153.guided.57, whole genome shotgun sequence	820..1257	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQRBM010000029.1 TPA_asm: Salmonella enterica strain YA00473369 SAMEA114526793-rid19992153.denovo.29, whole genome shotgun sequence	48513..49155	enterobacteriales	IncFII(S)	100	262 / 262	DAQRBM010000029.1 TPA_asm: Salmonella enterica strain YA00473369 SAMEA114526793-rid19992153.denovo.29, whole genome shotgun sequence	4260..4521																																																avrA	DAQRBM010000001.1	552903..553772	99.54	870	0						
GCA_033123945.1_PDT001957990.1_genomic.fna	Salmonella_enterica	0.5191	390.187 KB	5	aroC_43,dnaN_47,hemD_49,hisD_16,purE_41,sucA_15,thrA_3	241	4:d:1,7	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKJG010000001.1 Salmonella enterica strain PNUSAS396243 SAMN38020799-rid19992183.denovo.01, whole genome shotgun sequence	267424..267861	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKJG010000040.1 Salmonella enterica strain PNUSAS396243 SAMN38020799-rid19992183.guided.12, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOKJG010000021.1 Salmonella enterica strain PNUSAS396243 SAMN38020799-rid19992183.denovo.25, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOKJG010000043.1 Salmonella enterica strain PNUSAS396243 SAMN38020799-rid19992183.guided.24, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOKJG010000021.1 Salmonella enterica strain PNUSAS396243 SAMN38020799-rid19992183.denovo.25, whole genome shotgun sequence	1522..1652	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOKJG010000043.1 Salmonella enterica strain PNUSAS396243 SAMN38020799-rid19992183.guided.24, whole genome shotgun sequence	2416..2546		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOKJG010000013.1 Salmonella enterica strain PNUSAS396243 SAMN38020799-rid19992183.denovo.14, whole genome shotgun sequence	28833..28974																																									avrA	ABOKJG010000007.1	162754..163623	98.966	870	0						
GCA_033123965.1_PDT001957985.1_genomic.fna	Salmonella_enterica	0.5213	176.912 KB	10	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQRBN010000016.1 TPA_asm: Salmonella enterica strain YA00473132 SAMEA114526792-rid19991213.denovo.16, whole genome shotgun sequence	4994..5431	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQRBN010000059.1 TPA_asm: Salmonella enterica strain YA00473132 SAMEA114526792-rid19991213.guided.53, whole genome shotgun sequence	1148..1585	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQRBN010000030.1 TPA_asm: Salmonella enterica strain YA00473132 SAMEA114526792-rid19991213.denovo.30, whole genome shotgun sequence	35974..36616	enterobacteriales	IncFII(S)	100	262 / 262	DAQRBN010000043.1 TPA_asm: Salmonella enterica strain YA00473132 SAMEA114526792-rid19991213.denovo.43, whole genome shotgun sequence	5032..5293																																																avrA	DAQRBN010000012.1	60945..61814	99.54	870	0						
GCA_033123985.1_PDT001957983.1_genomic.fna	Salmonella_enterica	0.5213	133.95 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQRBP010000017.1 TPA_asm: Salmonella enterica strain YA00473063 SAMEA114526789-rid19991203.denovo.17, whole genome shotgun sequence	4994..5431	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQRBP010000071.1 TPA_asm: Salmonella enterica strain YA00473063 SAMEA114526789-rid19991203.guided.59, whole genome shotgun sequence	574..1011	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQRBP010000028.1 TPA_asm: Salmonella enterica strain YA00473063 SAMEA114526789-rid19991203.denovo.28, whole genome shotgun sequence	48512..49154	enterobacteriales	IncFII(S)	100	262 / 262	DAQRBP010000028.1 TPA_asm: Salmonella enterica strain YA00473063 SAMEA114526789-rid19991203.denovo.28, whole genome shotgun sequence	4260..4521																																																avrA	DAQRBP010000029.1	28822..29691	99.54	870	0						
GCA_033124005.1_PDT001957984.1_genomic.fna	Salmonella_enterica	0.5211	126.717 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQRBO010000003.1 TPA_asm: Salmonella enterica strain YA00472347/YA00472348 SAMEA114526790-rid19992143.denovo.03, whole genome shotgun sequence	96910..97347	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQRBO010000088.1 TPA_asm: Salmonella enterica strain YA00472347/YA00472348 SAMEA114526790-rid19992143.guided.65, whole genome shotgun sequence	3916..4353	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	DAQRBO010000017.1 TPA_asm: Salmonella enterica strain YA00472347/YA00472348 SAMEA114526790-rid19992143.denovo.17, whole genome shotgun sequence	68574..69216	enterobacteriales	IncFII(S)	100	262 / 262	DAQRBO010000017.1 TPA_asm: Salmonella enterica strain YA00472347/YA00472348 SAMEA114526790-rid19992143.denovo.17, whole genome shotgun sequence	84301..84562																																																avrA	DAQRBO010000001.1	61077..61946	99.885	870	0						
GCA_033124025.1_PDT001957977.1_genomic.fna	Salmonella_enterica	0.522	29.433 KB	52	aroC_10,dnaN_7,hemD_12,hisD_9,purE_112,sucA_9,thrA_2	313	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_112	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQRBR010000015.1 TPA_asm: Salmonella enterica strain YA00471635 SAMEA114526782-rid19991183.denovo.015, whole genome shotgun sequence	9828..10265	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	DAQRBR010000309.1 TPA_asm: Salmonella enterica strain YA00471635 SAMEA114526782-rid19991183.guided.257, whole genome shotgun sequence	73..510	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col440I	94.74	114 / 114	DAQRBR010000245.1 TPA_asm: Salmonella enterica strain YA00471635 SAMEA114526782-rid19991183.denovo.246, whole genome shotgun sequence	337..450	enterobacteriales	IncFIB(S)	100	643 / 643	DAQRBR010000004.1 TPA_asm: Salmonella enterica strain YA00471635 SAMEA114526782-rid19991183.denovo.004, whole genome shotgun sequence	76443..77085		enterobacteriales	IncFII(S)	100	262 / 262	DAQRBR010000231.1 TPA_asm: Salmonella enterica strain YA00471635 SAMEA114526782-rid19991183.denovo.232, whole genome shotgun sequence	1386..1647																																									avrA	DAQRBR010000006.1	39578..40447	99.885	870	0						
GCA_033124045.1_PDT001957973.1_genomic.fna	Salmonella_enterica	0.5211	133.76 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	3	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aac(6')-Iaa,dfrA1,dfrA1	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQRBQ010000015.1 TPA_asm: Salmonella enterica strain YA00471637 SAMEA114526775-rid19991173.denovo.15, whole genome shotgun sequence	4994..5431	Amikacin, Tobramycin	NC_003197	aadA1	100	789/789	DAQRBQ010000028.1 TPA_asm: Salmonella enterica strain YA00471637 SAMEA114526775-rid19991173.denovo.28, whole genome shotgun sequence	12420..13208	Spectinomycin, Streptomycin	JQ480156	aadA1	100	789/789	DAQRBQ010000064.1 TPA_asm: Salmonella enterica strain YA00471637 SAMEA114526775-rid19991173.guided.54, whole genome shotgun sequence	591..1379	Spectinomycin, Streptomycin	JQ480156	aac(6')-Iaa	96.35	438/438	DAQRBQ010000065.1 TPA_asm: Salmonella enterica strain YA00471637 SAMEA114526775-rid19991173.guided.56, whole genome shotgun sequence	1312..1749	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQRBQ010000066.1 TPA_asm: Salmonella enterica strain YA00471637 SAMEA114526775-rid19991173.guided.57, whole genome shotgun sequence	1312..1749	Amikacin, Tobramycin	NC_003197	dfrA1	100	474/474	DAQRBQ010000028.1 TPA_asm: Salmonella enterica strain YA00471637 SAMEA114526775-rid19991173.denovo.28, whole genome shotgun sequence	11270..11743	Trimethoprim	X00926	dfrA1	100	474/474	DAQRBQ010000067.1 TPA_asm: Salmonella enterica strain YA00471637 SAMEA114526775-rid19991173.guided.58, whole genome shotgun sequence	794..1267	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																																																																																																																											enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQRBQ010000026.1 TPA_asm: Salmonella enterica strain YA00471637 SAMEA114526775-rid19991173.denovo.26, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	DAQRBQ010000026.1 TPA_asm: Salmonella enterica strain YA00471637 SAMEA114526775-rid19991173.denovo.26, whole genome shotgun sequence	5032..5293																																																avrA	DAQRBQ010000030.1	28821..29690	99.54	870	0						
GCA_033124065.1_PDT001957968.1_genomic.fna	Salmonella_enterica	0.5214	148.727 KB	9	aroC_5,dnaN_2,hemD_3,hisD_7,purE_1401?,sucA_6,thrA_11	9238?	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	64.0102827763496	purE_1401?	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQRBT010000016.1 TPA_asm: Salmonella enterica strain YA00473093 SAMEA114526768-rid19992043.denovo.16, whole genome shotgun sequence	4994..5431	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQRBT010000061.1 TPA_asm: Salmonella enterica strain YA00473093 SAMEA114526768-rid19992043.guided.52, whole genome shotgun sequence	1316..1753	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQRBT010000027.1 TPA_asm: Salmonella enterica strain YA00473093 SAMEA114526768-rid19992043.denovo.27, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	DAQRBT010000027.1 TPA_asm: Salmonella enterica strain YA00473093 SAMEA114526768-rid19992043.denovo.27, whole genome shotgun sequence	4416..4677																																																avrA	DAQRBT010000001.1	60945..61814	99.54	870	0						
GCA_033124085.1_PDT001957971.1_genomic.fna	Salmonella_enterica	0.5215	142.623 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		4	Col(pHAD28),Col(pHAD28),Col440I,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	DAQRBU010000004.1 TPA_asm: Salmonella enterica strain YA00474471/YA00473363 SAMEA114526772-rid19992063.denovo.004, whole genome shotgun sequence	96914..97351	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQRBU010000058.1 TPA_asm: Salmonella enterica strain YA00474471/YA00473363 SAMEA114526772-rid19992063.denovo.059, whole genome shotgun sequence	6786..7622	Streptomycin	M28829	aph(3'')-Ib	100	780/804	DAQRBU010000058.1 TPA_asm: Salmonella enterica strain YA00474471/YA00473363 SAMEA114526772-rid19992063.denovo.059, whole genome shotgun sequence	7622..8401	Streptomycin	AF321551	aph(6)-Id	100	837/837	DAQRBU010000103.1 TPA_asm: Salmonella enterica strain YA00474471/YA00473363 SAMEA114526772-rid19992063.guided.071, whole genome shotgun sequence	2658..3494	Streptomycin	M28829	aph(3'')-Ib	100	804/804	DAQRBU010000103.1 TPA_asm: Salmonella enterica strain YA00474471/YA00473363 SAMEA114526772-rid19992063.guided.071, whole genome shotgun sequence	1855..2658	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	DAQRBU010000105.1 TPA_asm: Salmonella enterica strain YA00474471/YA00473363 SAMEA114526772-rid19992063.guided.078, whole genome shotgun sequence	1490..1927	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	DAQRBU010000058.1 TPA_asm: Salmonella enterica strain YA00474471/YA00473363 SAMEA114526772-rid19992063.denovo.059, whole genome shotgun sequence	85..900	Sulfamethoxazole	AY034138	sul2	100	816/816	DAQRBU010000103.1 TPA_asm: Salmonella enterica strain YA00474471/YA00473363 SAMEA114526772-rid19992063.guided.071, whole genome shotgun sequence	979..1794	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	DAQRBU010000058.1 TPA_asm: Salmonella enterica strain YA00474471/YA00473363 SAMEA114526772-rid19992063.denovo.059, whole genome shotgun sequence	4251..5525	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	DAQRBU010000104.1 TPA_asm: Salmonella enterica strain YA00474471/YA00473363 SAMEA114526772-rid19992063.guided.072, whole genome shotgun sequence	819..2093	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQRBU010000058.1 TPA_asm: Salmonella enterica strain YA00474471/YA00473363 SAMEA114526772-rid19992063.denovo.059, whole genome shotgun sequence	1427..1557	enterobacteriales	Col(pHAD28)	92.37	131 / 131	DAQRBU010000103.1 TPA_asm: Salmonella enterica strain YA00474471/YA00473363 SAMEA114526772-rid19992063.guided.071, whole genome shotgun sequence	322..452		enterobacteriales	Col440I	92.04	113 / 114	DAQRBU010000070.1 TPA_asm: Salmonella enterica strain YA00474471/YA00473363 SAMEA114526772-rid19992063.denovo.075, whole genome shotgun sequence	335..447		enterobacteriales	IncFIB(S)	100	643 / 643	DAQRBU010000015.1 TPA_asm: Salmonella enterica strain YA00474471/YA00473363 SAMEA114526772-rid19992063.denovo.015, whole genome shotgun sequence	14689..15331		enterobacteriales	IncFII(S)	100	262 / 262	DAQRBU010000015.1 TPA_asm: Salmonella enterica strain YA00474471/YA00473363 SAMEA114526772-rid19992063.denovo.015, whole genome shotgun sequence	30415..30676																											avrA	DAQRBU010000011.1	94133..95002	99.885	870	0						
GCA_033124105.1_PDT001957970.1_genomic.fna	Salmonella_enterica	0.5214	227.877 KB	7	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQRBS010000014.1 TPA_asm: Salmonella enterica strain YA00473374 SAMEA114526770-rid19992053.denovo.14, whole genome shotgun sequence	4998..5435	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQRBS010000058.1 TPA_asm: Salmonella enterica strain YA00473374 SAMEA114526770-rid19992053.guided.50, whole genome shotgun sequence	1814..2251	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQRBS010000021.1 TPA_asm: Salmonella enterica strain YA00473374 SAMEA114526770-rid19992053.denovo.21, whole genome shotgun sequence	50251..50893	enterobacteriales	IncFII(S)	100	262 / 262	DAQRBS010000021.1 TPA_asm: Salmonella enterica strain YA00473374 SAMEA114526770-rid19992053.denovo.21, whole genome shotgun sequence	5998..6259																																																avrA	DAQRBS010000001.1	552900..553769	99.54	870	0						
GCA_033124165.1_PDT001957953.1_genomic.fna	Salmonella_enterica	0.521	130.088 KB	12	aroC_5,dnaN_678,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	4293	9:g,p:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_678	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	DAQRCA010000012.1 TPA_asm: Salmonella enterica strain YA00473065 SAMEA114526738-rid19991953.denovo.12, whole genome shotgun sequence	28152..28589	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	DAQRCA010000080.1 TPA_asm: Salmonella enterica strain YA00473065 SAMEA114526738-rid19991953.guided.56, whole genome shotgun sequence	638..1075	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	97.71	262 / 262	DAQRCA010000022.1 TPA_asm: Salmonella enterica strain YA00473065 SAMEA114526738-rid19991953.denovo.22, whole genome shotgun sequence	63409..63668	enterobacteriales	IncX1	98.66	374 / 374	DAQRCA010000022.1 TPA_asm: Salmonella enterica strain YA00473065 SAMEA114526738-rid19991953.denovo.22, whole genome shotgun sequence	24683..25056																																																avrA	DAQRCA010000028.1	39466..40334	99.655	870	0						
GCA_033124185.1_PDT001957963.1_genomic.fna	Salmonella_enterica	0.5214	153.408 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQRBW010000001.1 TPA_asm: Salmonella enterica strain YA00471622/YA00471634 SAMEA114526753-rid19992013.denovo.01, whole genome shotgun sequence	4993..5430	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQRBW010000063.1 TPA_asm: Salmonella enterica strain YA00471622/YA00471634 SAMEA114526753-rid19992013.guided.58, whole genome shotgun sequence	337..774	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQRBW010000027.1 TPA_asm: Salmonella enterica strain YA00471622/YA00471634 SAMEA114526753-rid19992013.denovo.27, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	DAQRBW010000027.1 TPA_asm: Salmonella enterica strain YA00471622/YA00471634 SAMEA114526753-rid19992013.denovo.27, whole genome shotgun sequence	4416..4677																																																avrA	DAQRBW010000008.1	60945..61814	99.54	870	0						
GCA_033124225.1_PDT001957958.1_genomic.fna	Salmonella_enterica	0.5214	150.063 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQRBY010000017.1 TPA_asm: Salmonella enterica strain YA00472541 SAMEA114526745-rid19991983.denovo.17, whole genome shotgun sequence	4994..5431	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQRBY010000063.1 TPA_asm: Salmonella enterica strain YA00472541 SAMEA114526745-rid19991983.guided.52, whole genome shotgun sequence	2336..2773	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	DAQRBY010000064.1 TPA_asm: Salmonella enterica strain YA00472541 SAMEA114526745-rid19991983.guided.53, whole genome shotgun sequence	2336..2773	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																							enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQRBY010000031.1 TPA_asm: Salmonella enterica strain YA00472541 SAMEA114526745-rid19991983.denovo.31, whole genome shotgun sequence	48513..49155	enterobacteriales	IncFII(S)	100	262 / 262	DAQRBY010000031.1 TPA_asm: Salmonella enterica strain YA00472541 SAMEA114526745-rid19991983.denovo.31, whole genome shotgun sequence	4260..4521																																																avrA	DAQRBY010000002.1	60945..61814	99.54	870	0						
GCA_033124235.1_PDT001957967.1_genomic.fna	Salmonella_enterica	0.5214	130.325 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQRBV010000016.1 TPA_asm: Salmonella enterica strain YA00473102 SAMEA114526767-rid19991153.denovo.16, whole genome shotgun sequence	4993..5430	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQRBV010000069.1 TPA_asm: Salmonella enterica strain YA00473102 SAMEA114526767-rid19991153.guided.60, whole genome shotgun sequence	107..544	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQRBV010000030.1 TPA_asm: Salmonella enterica strain YA00473102 SAMEA114526767-rid19991153.denovo.30, whole genome shotgun sequence	48449..49091	enterobacteriales	IncFII(S)	100	262 / 262	DAQRBV010000030.1 TPA_asm: Salmonella enterica strain YA00473102 SAMEA114526767-rid19991153.denovo.30, whole genome shotgun sequence	4197..4458																																																avrA	DAQRBV010000002.1	28822..29691	99.54	870	0						
GCA_033124265.1_PDT001957954.1_genomic.fna	Salmonella_enterica	0.5213	132.168 KB	12	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQRBZ010000017.1 TPA_asm: Salmonella enterica strain YA00473136/YA00473139 SAMEA114526741-rid19991963.denovo.17, whole genome shotgun sequence	4993..5430	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQRBZ010000064.1 TPA_asm: Salmonella enterica strain YA00473136/YA00473139 SAMEA114526741-rid19991963.guided.55, whole genome shotgun sequence	858..1295	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQRBZ010000029.1 TPA_asm: Salmonella enterica strain YA00473136/YA00473139 SAMEA114526741-rid19991963.denovo.29, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	DAQRBZ010000029.1 TPA_asm: Salmonella enterica strain YA00473136/YA00473139 SAMEA114526741-rid19991963.denovo.29, whole genome shotgun sequence	4416..4677																																																avrA	DAQRBZ010000018.1	28822..29691	99.54	870	0						
GCA_033124325.1_PDT001957959.1_genomic.fna	Salmonella_enterica	0.5213	114.227 KB	14	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	DAQRBX010000014.1 TPA_asm: Salmonella enterica strain YA00473091 SAMEA114526747-rid19991993.denovo.14, whole genome shotgun sequence	5005..5442	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	DAQRBX010000081.1 TPA_asm: Salmonella enterica strain YA00473091 SAMEA114526747-rid19991993.guided.69, whole genome shotgun sequence	1051..1488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	DAQRBX010000033.1 TPA_asm: Salmonella enterica strain YA00473091 SAMEA114526747-rid19991993.denovo.33, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	DAQRBX010000033.1 TPA_asm: Salmonella enterica strain YA00473091 SAMEA114526747-rid19991993.denovo.33, whole genome shotgun sequence	4416..4677																																																avrA	DAQRBX010000027.1	28821..29690	99.54	870	0						
GCA_033124545.1_PDT001957835.1_genomic.fna	Salmonella_enterica	0.5214	225.556 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKJW010000006.1 Salmonella enterica strain PNUSAS396339 SAMN38019581-rid19990773.denovo.06, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKJW010000042.1 Salmonella enterica strain PNUSAS396339 SAMN38019581-rid19990773.guided.23, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOKJW010000018.1 Salmonella enterica strain PNUSAS396339 SAMN38019581-rid19990773.denovo.18, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOKJW010000018.1 Salmonella enterica strain PNUSAS396339 SAMN38019581-rid19990773.denovo.18, whole genome shotgun sequence	30407..30668																																																avrA	ABOKJW010000002.1	401461..402329	100	869	0						
GCA_033124565.1_PDT001957836.1_genomic.fna	Salmonella_enterica	0.5213	334.517 KB	6	aroC_2,dnaN_59,hemD_23,hisD_64,purE_38,sucA_19,thrA_12	1499	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_59	hemD	100	100	hemD_23	hisD	100	100	hisD_64	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOKJV010000004.1 Salmonella enterica strain PNUSAS396315 SAMN38019528-rid19989673.denovo.04, whole genome shotgun sequence	19218..19655	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOKJV010000039.1 Salmonella enterica strain PNUSAS396315 SAMN38019528-rid19989673.guided.24, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKJV010000001.1	409369..410239	99.311	871	0						
GCA_033124585.1_PDT001957837.1_genomic.fna	Salmonella_enterica	0.5215	324.277 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKJU010000003.1 Salmonella enterica strain PNUSAS396340 SAMN38019585-rid19988253.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKJU010000045.1 Salmonella enterica strain PNUSAS396340 SAMN38019585-rid19988253.guided.16, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOKJU010000015.1 Salmonella enterica strain PNUSAS396340 SAMN38019585-rid19988253.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOKJU010000015.1 Salmonella enterica strain PNUSAS396340 SAMN38019585-rid19988253.denovo.15, whole genome shotgun sequence	30407..30668																																																avrA	ABOKJU010000002.1	401529..402397	100	869	0						
GCA_033124605.1_PDT001957834.1_genomic.fna	Salmonella_enterica	0.5211	307.433 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOKJX010000001.1 Salmonella enterica strain PNUSAS396337 SAMN38019584-rid19989663.denovo.01, whole genome shotgun sequence	170806..171243	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOKJX010000035.1 Salmonella enterica strain PNUSAS396337 SAMN38019584-rid19989663.guided.14, whole genome shotgun sequence	6863..7300	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKJX010000005.1	121602..122471	99.31	870	0						
GCA_033124625.1_PDT001957833.1_genomic.fna	Salmonella_enterica	0.5219	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKJY010000001.1 Salmonella enterica strain PNUSAS396341 SAMN38019583-rid19990763.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKJY010000027.1 Salmonella enterica strain PNUSAS396341 SAMN38019583-rid19990763.guided.10, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKJY010000002.1	94005..94874	98.851	870	0						
GCA_033124645.1_PDT001957832.1_genomic.fna	Salmonella_enterica	0.5205	363.75 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKJZ010000001.1 Salmonella enterica strain PNUSAS396327 SAMN38019556-rid19988243.denovo.01, whole genome shotgun sequence	477346..477783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKJZ010000031.1 Salmonella enterica strain PNUSAS396327 SAMN38019556-rid19988243.guided.18, whole genome shotgun sequence	10735..11172	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKJZ010000010.1	140193..141061	99.195	870	0						
GCA_033124665.1_PDT001957831.1_genomic.fna	Salmonella_enterica	0.5213	238.812 KB	8	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	12	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aadA2,aac(3)-IIa,aac(6')-Iaa,aadA2,aph(3')-Ia,aac(3)-IIa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul1,sul1,sul2,sul2,tet(B),tet(B),dfrA12,dfrA12	0		4	Col(pHAD28),Col(pHAD28),IncFIA,IncFIB(AP001918),IncFII(pCoo)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKKA010000002.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.denovo.02, whole genome shotgun sequence	145530..145967	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKKA010000042.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.denovo.45, whole genome shotgun sequence	5368..6204	Streptomycin	M28829	aph(3')-Ia	99.88	816/816	ABOKKA010000042.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.denovo.45, whole genome shotgun sequence	4217..5032	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	EF015636	aph(3'')-Ib	100	804/804	ABOKKA010000042.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.denovo.45, whole genome shotgun sequence	6204..7007	Streptomycin	AF321551	aadA2	100	792/792	ABOKKA010000055.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.denovo.59, whole genome shotgun sequence	1652..2443	Spectinomycin, Streptomycin	JQ364967	aac(3)-IIa	100	861/861	ABOKKA010000062.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.denovo.68, whole genome shotgun sequence	741..1601	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin, Gentamicin, Tobramycin	X51534	aac(6')-Iaa	100	438/438	ABOKKA010000075.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.42, whole genome shotgun sequence	8091..8528	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOKKA010000076.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.57, whole genome shotgun sequence	1405..2196	Spectinomycin, Streptomycin	JQ364967	aph(3')-Ia	99.88	816/816	ABOKKA010000078.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.65, whole genome shotgun sequence	334..1149	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin	EF015636	aac(3)-IIa	100	861/861	ABOKKA010000079.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.69, whole genome shotgun sequence	82..942	Apramycin, Gentamicin, Tobramycin, Dibekacin, Netilmicin, Sisomicin, Gentamicin, Tobramycin	X51534	aph(6)-Id	100	837/837	ABOKKA010000080.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.71, whole genome shotgun sequence	836..1672	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKKA010000080.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.71, whole genome shotgun sequence	33..836	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOKKA010000081.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.72, whole genome shotgun sequence	836..1672	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOKKA010000081.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.72, whole genome shotgun sequence	34..836	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOKKA010000081.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.72, whole genome shotgun sequence	33..836	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOKKA010000081.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.72, whole genome shotgun sequence	33..836	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOKKA010000081.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.72, whole genome shotgun sequence	33..836	Streptomycin	AF321550	blaTEM-1B	100	861/861	ABOKKA010000061.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.denovo.67, whole genome shotgun sequence	531..1391	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOKKA010000084.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.76, whole genome shotgun sequence	522..1382	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABOKKA010000058.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.denovo.63, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOKKA010000077.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.62, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul1	100	840/840	ABOKKA010000055.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.denovo.59, whole genome shotgun sequence	308..1147	Sulfamethoxazole	U12338	sul1	100	840/840	ABOKKA010000076.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.57, whole genome shotgun sequence	2701..3540	Sulfamethoxazole	U12338	sul2	100	816/816	ABOKKA010000085.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.82, whole genome shotgun sequence	11..826	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOKKA010000086.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.83, whole genome shotgun sequence	11..826	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOKKA010000082.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.73, whole genome shotgun sequence	2..1207	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABOKKA010000083.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.74, whole genome shotgun sequence	2..1207	Doxycycline, Tetracycline, Minocycline	AP000342	dfrA12	100	498/498	ABOKKA010000055.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.denovo.59, whole genome shotgun sequence	2851..3348	Trimethoprim	AM040708	dfrA12	100	498/498	ABOKKA010000076.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.57, whole genome shotgun sequence	500..997	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOKKA010000058.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.denovo.63, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOKKA010000077.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.guided.62, whole genome shotgun sequence	2044..2174		enterobacteriales	IncFIA	99.74	388 / 388	ABOKKA010000032.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.denovo.33, whole genome shotgun sequence	22081..22467		enterobacteriales	IncFIB(AP001918)	98.09	682 / 682	ABOKKA010000036.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.denovo.37, whole genome shotgun sequence	14841..15522		enterobacteriales	IncFII(pCoo)	96.18	262 / 262	ABOKKA010000029.1 Salmonella enterica strain PNUSAS396338 SAMN38019580-rid19989653.denovo.30, whole genome shotgun sequence	126..387																											avrA	ABOKKA010000001.1	434658..435527	99.885	870	0						
GCA_033124685.1_PDT001957830.1_genomic.fna	Salmonella_enterica	0.5221	445.042 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKKB010000001.1 Salmonella enterica strain PNUSAS396335 SAMN38019586-rid19990753.denovo.01, whole genome shotgun sequence	384202..384639	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKKB010000029.1 Salmonella enterica strain PNUSAS396335 SAMN38019586-rid19990753.guided.13, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKB010000003.1	151717..152586	99.655	870	0						
GCA_033124705.1_PDT001957828.1_genomic.fna	Salmonella_enterica	0.5216	762.325 KB	2	aroC_10,dnaN_7,hemD_138*,hisD_14,purE_15,sucA_12,thrA_12	Unknown	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	99.7685185185185	100	hemD_138*	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKKD010000001.1 Salmonella enterica strain PNUSAS396342 SAMN38019579-rid19990743.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKKD010000016.1 Salmonella enterica strain PNUSAS396342 SAMN38019579-rid19990743.guided.11, whole genome shotgun sequence	18471..18908	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKD010000003.1	561746..562616	99.656	871	0						
GCA_033124725.1_PDT001957827.1_genomic.fna	Salmonella_enterica	0.5218	631.022 KB	4	aroC_13,dnaN_208,hemD_49,hisD_719,purE_33,sucA_16,thrA_4	2940	38:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_208	hemD	100	100	hemD_49	hisD	100	100	hisD_719	purE	100	100	purE_33	sucA	100	100	sucA_16	thrA	100	100	thrA_4	38	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Freetown		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKKE010000001.1 Salmonella enterica strain PNUSAS396329 SAMN38019561-rid19988233.denovo.01, whole genome shotgun sequence	181791..182228	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKKE010000021.1 Salmonella enterica strain PNUSAS396329 SAMN38019561-rid19988233.guided.13, whole genome shotgun sequence	10787..11224	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKE010000003.1	152802..153670	99.31	870	0						
GCA_033124745.1_PDT001957826.1_genomic.fna	Salmonella_enterica	0.5211	335.214 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOKKC010000001.1 Salmonella enterica strain PNUSAS396331 SAMN38019563-rid19989633.denovo.01, whole genome shotgun sequence	494528..494965	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOKKC010000036.1 Salmonella enterica strain PNUSAS396331 SAMN38019563-rid19989633.guided.18, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKC010000002.1	144915..145784	99.31	870	0						
GCA_033124765.1_PDT001957824.1_genomic.fna	Salmonella_enterica	0.5217	594.001 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKKG010000001.1 Salmonella enterica strain PNUSAS396334 SAMN38019562-rid19989623.denovo.01, whole genome shotgun sequence	261921..262358	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKKG010000029.1 Salmonella enterica strain PNUSAS396334 SAMN38019562-rid19989623.guided.13, whole genome shotgun sequence	36384..36821	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABOKKG010000012.1 Salmonella enterica strain PNUSAS396334 SAMN38019562-rid19989623.denovo.12, whole genome shotgun sequence	51927..52188																																																						avrA	ABOKKG010000003.1	498909..499777	99.425	870	0						
GCA_033124785.1_PDT001957825.1_genomic.fna	Salmonella_enterica	0.5212	737.378 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKKF010000001.1 Salmonella enterica strain PNUSAS396330 SAMN38019558-rid19990733.denovo.01, whole genome shotgun sequence	651267..651704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKKF010000014.1 Salmonella enterica strain PNUSAS396330 SAMN38019558-rid19990733.guided.07, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKF010000002.1	561740..562610	99.656	871	0						
GCA_033124805.1_PDT001957822.1_genomic.fna	Salmonella_enterica	0.5219	430.295 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKKI010000001.1 Salmonella enterica strain PNUSAS396325 SAMN38019522-rid19988223.denovo.01, whole genome shotgun sequence	560073..560510	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKKI010000035.1 Salmonella enterica strain PNUSAS396325 SAMN38019522-rid19988223.guided.25, whole genome shotgun sequence	1033..1470	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKI010000010.1	140075..140943	99.195	870	0						
GCA_033124825.1_PDT001957823.1_genomic.fna	Salmonella_enterica	0.5206	198.101 KB	8	aroC_46,dnaN_55,hemD_23,hisD_14,purE_16,sucA_54,thrA_56	135	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_55	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_54	thrA	100	100	thrA_56	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKKH010000003.1 Salmonella enterica strain PNUSAS396328 SAMN38019557-rid19990723.denovo.03, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKKH010000050.1 Salmonella enterica strain PNUSAS396328 SAMN38019557-rid19990723.guided.39, whole genome shotgun sequence	6822..7259	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKH010000009.1	39496..40366	99.311	871	0						
GCA_033124845.1_PDT001957821.1_genomic.fna	Salmonella_enterica	0.5217	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKKK010000001.1 Salmonella enterica strain PNUSAS396333 SAMN38019559-rid19989613.denovo.01, whole genome shotgun sequence	790275..790712	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKKK010000028.1 Salmonella enterica strain PNUSAS396333 SAMN38019559-rid19989613.guided.10, whole genome shotgun sequence	14365..14802	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKK010000002.1	183093..183962	98.966	870	0						
GCA_033124865.1_PDT001957819.1_genomic.fna	Salmonella_enterica	0.5211	540.549 KB	4	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOKKJ010000004.1 Salmonella enterica strain PNUSAS396318 SAMN38019527-rid19989603.denovo.04, whole genome shotgun sequence	393609..394046	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOKKJ010000037.1 Salmonella enterica strain PNUSAS396318 SAMN38019527-rid19989603.guided.14, whole genome shotgun sequence	34706..35143	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKJ010000003.1	497369..498237	99.655	869	0						
GCA_033124945.1_PDT001957818.1_genomic.fna	Salmonella_enterica	0.5216	163.723 KB	8	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKKM010000001.1 Salmonella enterica strain PNUSAS396326 SAMN38019519-rid19990703.denovo.01, whole genome shotgun sequence	367785..368222	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKKM010000047.1 Salmonella enterica strain PNUSAS396326 SAMN38019519-rid19990703.guided.28, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABOKKM010000015.1 Salmonella enterica strain PNUSAS396326 SAMN38019519-rid19990703.denovo.15, whole genome shotgun sequence	108583..109225																																																																	
GCA_033124965.1_PDT001957820.1_genomic.fna	Salmonella_enterica	0.5225	498.704 KB	3	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(Yp)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKKL010000001.1 Salmonella enterica strain PNUSAS396332 SAMN38019560-rid19990713.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKKL010000032.1 Salmonella enterica strain PNUSAS396332 SAMN38019560-rid19990713.guided.22, whole genome shotgun sequence	4437..4874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(Yp)	91.96	224 / 230	ABOKKL010000017.1 Salmonella enterica strain PNUSAS396332 SAMN38019560-rid19990713.denovo.17, whole genome shotgun sequence	27119..27339																																																						avrA	ABOKKL010000003.1	39430..40299	99.54	870	0						
GCA_033125005.1_PDT001957816.1_genomic.fna	Salmonella_enterica	0.5213	223.106 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKKO010000002.1 Salmonella enterica strain PNUSAS396314 SAMN38019529-rid19989593.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKKO010000048.1 Salmonella enterica strain PNUSAS396314 SAMN38019529-rid19989593.guided.17, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABOKKO010000038.1 Salmonella enterica strain PNUSAS396314 SAMN38019529-rid19989593.denovo.41, whole genome shotgun sequence	4021..4151	enterobacteriales	IncFIB(S)	100	643 / 643	ABOKKO010000017.1 Salmonella enterica strain PNUSAS396314 SAMN38019529-rid19989593.denovo.18, whole genome shotgun sequence	14680..15322		enterobacteriales	IncFII(S)	100	262 / 262	ABOKKO010000017.1 Salmonella enterica strain PNUSAS396314 SAMN38019529-rid19989593.denovo.18, whole genome shotgun sequence	30407..30668																																									avrA	ABOKKO010000004.1	155216..156084	100	869	0						
GCA_033125025.1_PDT001957817.1_genomic.fna	Salmonella_enterica	0.5223	378.694 KB	5	aroC_42,dnaN_11,hemD_48,hisD_149,purE_12,sucA_13,thrA_4	1575	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKKN010000001.1 Salmonella enterica strain PNUSAS396320 SAMN38019521-rid19988213.denovo.01, whole genome shotgun sequence	37897..38334	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKKN010000035.1 Salmonella enterica strain PNUSAS396320 SAMN38019521-rid19988213.guided.24, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033125045.1_PDT001957815.1_genomic.fna	Salmonella_enterica	0.5222	367.995 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKKP010000001.1 Salmonella enterica strain PNUSAS396324 SAMN38019524-rid19990693.denovo.01, whole genome shotgun sequence	473791..474228	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKKP010000030.1 Salmonella enterica strain PNUSAS396324 SAMN38019524-rid19990693.guided.17, whole genome shotgun sequence	8927..9364	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKP010000002.1	150110..150979	99.655	870	0						
GCA_033125065.1_PDT001957813.1_genomic.fna	Salmonella_enterica	0.5187	451.908 KB	5	aroC_391,dnaN_101,hemD_21,hisD_62,purE_36,sucA_19,thrA_307	5447	17:a:e,n,x	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_391	dnaN	100	100	dnaN_101	hemD	100	100	hemD_21	hisD	100	100	hisD_62	purE	100	100	purE_36	sucA	100	100	sucA_19	thrA	100	100	thrA_307	17	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Kinondoni		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKKT010000001.1 Salmonella enterica strain PNUSAS396321 SAMN38019526-rid19990683.denovo.01, whole genome shotgun sequence	175619..176056	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKKT010000028.1 Salmonella enterica strain PNUSAS396321 SAMN38019526-rid19990683.guided.13, whole genome shotgun sequence	14332..14769	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABOKKT010000005.1 Salmonella enterica strain PNUSAS396321 SAMN38019526-rid19990683.denovo.05, whole genome shotgun sequence	138804..139226	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABOKKT010000030.1 Salmonella enterica strain PNUSAS396321 SAMN38019526-rid19990683.guided.23, whole genome shotgun sequence	6973..7395	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKT010000003.1	569932..570801	99.54	870	0						
GCA_033125085.1_PDT001957814.1_genomic.fna	Salmonella_enterica	0.5225	269.483 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKKQ010000001.1 Salmonella enterica strain PNUSAS396293 SAMN38019516-rid19989583.denovo.01, whole genome shotgun sequence	573964..574401	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKKQ010000035.1 Salmonella enterica strain PNUSAS396293 SAMN38019516-rid19989583.guided.25, whole genome shotgun sequence	20237..20674	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKQ010000002.1	149828..150697	99.655	870	0						
GCA_033125105.1_PDT001957812.1_genomic.fna	Salmonella_enterica	0.5207	453.394 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKKU010000002.1 Salmonella enterica strain PNUSAS396322 SAMN38019523-rid19988203.denovo.02, whole genome shotgun sequence	344236..344673	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKKU010000029.1 Salmonella enterica strain PNUSAS396322 SAMN38019523-rid19988203.guided.11, whole genome shotgun sequence	42316..42753	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKU010000012.1	95226..96094	99.195	870	0						
GCA_033125125.1_PDT001957811.1_genomic.fna	Salmonella_enterica	0.5213	300.068 KB	6	aroC_2,dnaN_59,hemD_23,hisD_64,purE_38,sucA_19,thrA_12	1499	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_59	hemD	100	100	hemD_23	hisD	100	100	hisD_64	purE	100	100	purE_38	sucA	100	100	sucA_19	thrA	100	100	thrA_12	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOKKR010000008.1 Salmonella enterica strain PNUSAS396323 SAMN38019525-rid19989573.denovo.08, whole genome shotgun sequence	20373..20810	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOKKR010000042.1 Salmonella enterica strain PNUSAS396323 SAMN38019525-rid19989573.guided.26, whole genome shotgun sequence	16456..16893	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKKR010000001.1	511284..512154	99.311	871	0						
GCA_033125145.1_PDT001957810.1_genomic.fna	Salmonella_enterica	0.5205	718.558 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKKS010000001.1 Salmonella enterica strain PNUSAS396319 SAMN38019520-rid19988193.denovo.01, whole genome shotgun sequence	643300..643737	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKKS010000018.1 Salmonella enterica strain PNUSAS396319 SAMN38019520-rid19988193.guided.11, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKS010000003.1	544609..545477	99.425	870	0						
GCA_033125165.1_PDT001957809.1_genomic.fna	Salmonella_enterica	0.5223	361.677 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKKV010000001.1 Salmonella enterica strain PNUSAS396294 SAMN38019518-rid19989563.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKKV010000037.1 Salmonella enterica strain PNUSAS396294 SAMN38019518-rid19989563.guided.23, whole genome shotgun sequence	8030..8467	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOKKV010000024.1 Salmonella enterica strain PNUSAS396294 SAMN38019518-rid19989563.denovo.27, whole genome shotgun sequence	1506..1636																																																						avrA	ABOKKV010000006.1	39350..40219	98.966	870	0						
GCA_033125185.1_PDT001957806.1_genomic.fna	Salmonella_enterica	0.5194	740.223 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKKY010000001.1 Salmonella enterica strain PNUSAS396317 SAMN38019510-rid19989553.denovo.01, whole genome shotgun sequence	1233554..1233991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKKY010000021.1 Salmonella enterica strain PNUSAS396317 SAMN38019510-rid19989553.guided.08, whole genome shotgun sequence	31428..31865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKY010000003.1	556447..557315	99.425	870	0						
GCA_033125195.1_PDT001957808.1_genomic.fna	Salmonella_enterica	0.523	415.95 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKKW010000001.1 Salmonella enterica strain PNUSAS396313 SAMN38019509-rid19990673.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKKW010000032.1 Salmonella enterica strain PNUSAS396313 SAMN38019509-rid19990673.guided.25, whole genome shotgun sequence	1052..1489	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKW010000004.1	39535..40404	99.655	870	0						
GCA_033125225.1_PDT001957807.1_genomic.fna	Salmonella_enterica	0.5218	414.835 KB	5	aroC_18,dnaN_7,hemD_47,hisD_9,purE_5,sucA_526,thrA_22	2562	4:z4,z23:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_7	hemD	100	100	hemD_47	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_526	thrA	100	100	thrA_22	4	z4,z23	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanleyville		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKKX010000002.1 Salmonella enterica strain PNUSAS396292 SAMN38019515-rid19988183.denovo.02, whole genome shotgun sequence	486041..486478	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKKX010000031.1 Salmonella enterica strain PNUSAS396292 SAMN38019515-rid19988183.guided.20, whole genome shotgun sequence	2168..2605	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABOKKX010000004.1 Salmonella enterica strain PNUSAS396292 SAMN38019515-rid19988183.denovo.04, whole genome shotgun sequence	167140..167562	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABOKKX010000030.1 Salmonella enterica strain PNUSAS396292 SAMN38019515-rid19988183.guided.19, whole genome shotgun sequence	10626..11048	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKX010000001.1	519198..520067	99.54	870	0						
GCA_033125245.1_PDT001957805.1_genomic.fna	Salmonella_enterica	0.5207	263.246 KB	6	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKKZ010000002.1 Salmonella enterica strain PNUSAS396291 SAMN38019514-rid19988173.denovo.02, whole genome shotgun sequence	489013..489450	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKKZ010000045.1 Salmonella enterica strain PNUSAS396291 SAMN38019514-rid19988173.guided.30, whole genome shotgun sequence	10060..10497	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKKZ010000001.1	554421..555290	99.31	870	0						
GCA_033125265.1_PDT001957804.1_genomic.fna	Salmonella_enterica	0.5219	493.392 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKLA010000001.1 Salmonella enterica strain PNUSAS396311 SAMN38019513-rid19990663.denovo.01, whole genome shotgun sequence	145460..145897	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKLA010000030.1 Salmonella enterica strain PNUSAS396311 SAMN38019513-rid19990663.guided.16, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKLA010000005.1	401359..402228	99.655	870	0						
GCA_033125285.1_PDT001957802.1_genomic.fna	Salmonella_enterica	0.5215	391.761 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKLC010000001.1 Salmonella enterica strain PNUSAS396316 SAMN38019511-rid19988163.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKLC010000033.1 Salmonella enterica strain PNUSAS396316 SAMN38019511-rid19988163.guided.23, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKLC010000003.1	256205..257074	99.31	870	0						
GCA_033125305.1_PDT001957803.1_genomic.fna	Salmonella_enterica	0.5186	764.759 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKLB010000001.1 Salmonella enterica strain PNUSAS396312 SAMN38019512-rid19990653.denovo.01, whole genome shotgun sequence	408641..409078	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKLB010000018.1 Salmonella enterica strain PNUSAS396312 SAMN38019512-rid19990653.guided.09, whole genome shotgun sequence	42442..42879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKLB010000004.1	560981..561851	99.656	871	0						
GCA_033125335.1_PDT001957801.1_genomic.fna	Salmonella_enterica	0.5202	400.829 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	4	IncFIB(S),IncFII(S),IncI2(Delta),IncL	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKLD010000001.1 Salmonella enterica strain PNUSAS396295 SAMN38019517-rid19989543.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKLD010000026.1 Salmonella enterica strain PNUSAS396295 SAMN38019517-rid19989543.guided.16, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKLD010000021.1 Salmonella enterica strain PNUSAS396295 SAMN38019517-rid19989543.denovo.22, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOKLD010000022.1 Salmonella enterica strain PNUSAS396295 SAMN38019517-rid19989543.denovo.24, whole genome shotgun sequence	3413..3674		enterobacteriales	IncI2(Delta)	97.83	322 / 316	ABOKLD010000017.1 Salmonella enterica strain PNUSAS396295 SAMN38019517-rid19989543.denovo.18, whole genome shotgun sequence	52103..52424		enterobacteriales	IncL	98.64	663 / 661	ABOKLD010000016.1 Salmonella enterica strain PNUSAS396295 SAMN38019517-rid19989543.denovo.17, whole genome shotgun sequence	49378..50039																																		avrA	ABOKLD010000002.1	553635..554504	99.54	870	0						
GCA_033125505.1_PDT001957530.1_genomic.fna	Salmonella_enterica	0.5208	373.059 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKLN010000002.1 Salmonella enterica strain PNUSAS395981 SAMN38019433-rid19975473.denovo.02, whole genome shotgun sequence	384846..385283	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKLN010000050.1 Salmonella enterica strain PNUSAS395981 SAMN38019433-rid19975473.guided.23, whole genome shotgun sequence	9248..9685	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKLN010000008.1	150719..151589	99.196	871	0						
GCA_033125525.1_PDT001957528.1_genomic.fna	Salmonella_enterica	0.5201	229.718 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKLP010000001.1 Salmonella enterica strain PNUSAS395960 SAMN38019434-rid19975463.denovo.01, whole genome shotgun sequence	486071..486508	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKLP010000045.1 Salmonella enterica strain PNUSAS395960 SAMN38019434-rid19975463.guided.20, whole genome shotgun sequence	44275..44712	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOKLP010000003.1 Salmonella enterica strain PNUSAS395960 SAMN38019434-rid19975463.denovo.03, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOKLP010000046.1 Salmonella enterica strain PNUSAS395960 SAMN38019434-rid19975463.guided.33, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKLP010000002.1	39477..40346	99.195	870	0						
GCA_033125585.1_PDT001957525.1_genomic.fna	Salmonella_enterica	0.5213	456.257 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKLR010000001.1 Salmonella enterica strain PNUSAS395988 SAMN38019438-rid19976693.denovo.01, whole genome shotgun sequence	136618..137055	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKLR010000026.1 Salmonella enterica strain PNUSAS395988 SAMN38019438-rid19976693.guided.18, whole genome shotgun sequence	13996..14433	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKLR010000002.1	494049..494917	99.425	870	0						
GCA_033125625.1_PDT001957526.1_genomic.fna	Salmonella_enterica	0.523	344.87 KB	6	aroC_43,dnaN_41,hemD_16,hisD_13,purE_12,sucA_13,thrA_4	195	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKLQ010000008.1 Salmonella enterica strain PNUSAS395943 SAMN38019440-rid19982523.denovo.08, whole genome shotgun sequence	153966..154403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKLQ010000033.1 Salmonella enterica strain PNUSAS395943 SAMN38019440-rid19982523.guided.26, whole genome shotgun sequence	1100..1537	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033125645.1_PDT001957524.1_genomic.fna	Salmonella_enterica	0.5223	203.735 KB	7	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKLS010000003.1 Salmonella enterica strain PNUSAS395987 SAMN38019436-rid19978703.denovo.03, whole genome shotgun sequence	259112..259549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKLS010000036.1 Salmonella enterica strain PNUSAS395987 SAMN38019436-rid19978703.guided.30, whole genome shotgun sequence	7733..8170	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKLS010000002.1	411101..411970	99.77	870	0						
GCA_033125665.1_PDT001957521.1_genomic.fna	Salmonella_enterica	0.5207	284.132 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKLU010000001.1 Salmonella enterica strain PNUSAS395940 SAMN38019446-rid19981713.denovo.01, whole genome shotgun sequence	292825..293262	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKLU010000033.1 Salmonella enterica strain PNUSAS395940 SAMN38019446-rid19981713.guided.20, whole genome shotgun sequence	18273..18710	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKLU010000019.1 Salmonella enterica strain PNUSAS395940 SAMN38019446-rid19981713.denovo.19, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOKLU010000019.1 Salmonella enterica strain PNUSAS395940 SAMN38019446-rid19981713.denovo.19, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABOKLU010000020.1 Salmonella enterica strain PNUSAS395940 SAMN38019446-rid19981713.denovo.21, whole genome shotgun sequence	32011..32384																																									avrA	ABOKLU010000016.1	28834..29703	99.54	870	0						
GCA_033125705.1_PDT001957522.1_genomic.fna	Salmonella_enterica	0.5206	430.479 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKLV010000002.1 Salmonella enterica strain PNUSAS395930 SAMN38019445-rid19986613.denovo.02, whole genome shotgun sequence	386030..386467	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKLV010000042.1 Salmonella enterica strain PNUSAS395930 SAMN38019445-rid19986613.guided.17, whole genome shotgun sequence	14405..14842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKLV010000008.1	150757..151627	99.196	871	0						
GCA_033125725.1_PDT001957520.1_genomic.fna	Salmonella_enterica	0.5206	275.083 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKLW010000001.1 Salmonella enterica strain PNUSAS395983 SAMN38019431-rid19975453.denovo.01, whole genome shotgun sequence	407341..407778	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKLW010000052.1 Salmonella enterica strain PNUSAS395983 SAMN38019431-rid19975453.guided.24, whole genome shotgun sequence	6880..7317	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKLW010000011.1	150710..151578	99.195	870	0						
GCA_033125785.1_PDT001957517.1_genomic.fna	Salmonella_enterica	0.5213	430.171 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKLZ010000001.1 Salmonella enterica strain PNUSAS395917 SAMN38019441-rid19984103.denovo.01, whole genome shotgun sequence	477346..477783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKLZ010000036.1 Salmonella enterica strain PNUSAS395917 SAMN38019441-rid19984103.guided.20, whole genome shotgun sequence	26975..27412	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKLZ010000009.1	140181..141049	99.195	870	0						
GCA_033125805.1_PDT001957516.1_genomic.fna	Salmonella_enterica	0.52	410.031 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_4	371	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABOKLY010000004.1 Salmonella enterica strain PNUSAS395968 SAMN38019435-rid19982793.denovo.04, whole genome shotgun sequence	255339..255776	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABOKLY010000031.1 Salmonella enterica strain PNUSAS395968 SAMN38019435-rid19982793.guided.23, whole genome shotgun sequence	14887..15324	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKLY010000001.1	140399..141267	99.425	870	0						
GCA_033125825.1_PDT001957515.1_genomic.fna	Salmonella_enterica	0.5193	234.337 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKMC010000001.1 Salmonella enterica strain PNUSAS395942 SAMN38019442-rid19973943.denovo.01, whole genome shotgun sequence	486073..486510	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKMC010000039.1 Salmonella enterica strain PNUSAS395942 SAMN38019442-rid19973943.guided.28, whole genome shotgun sequence	21412..21849	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOKMC010000003.1 Salmonella enterica strain PNUSAS395942 SAMN38019442-rid19973943.denovo.03, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOKMC010000040.1 Salmonella enterica strain PNUSAS395942 SAMN38019442-rid19973943.guided.32, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKMC010000002.1	169343..170212	99.195	870	0						
GCA_033125865.1_PDT001957513.1_genomic.fna	Salmonella_enterica	0.5229	374.735 KB	6	aroC_46,dnaN_54,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	127	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_54	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOKMD010000003.1 Salmonella enterica strain PNUSAS395979 SAMN38019432-rid19973933.denovo.03, whole genome shotgun sequence	256213..256650	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOKMD010000029.1 Salmonella enterica strain PNUSAS395979 SAMN38019432-rid19973933.guided.23, whole genome shotgun sequence	6841..7278	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKMD010000001.1	408134..409003	99.31	870	0						
GCA_033125885.1_PDT001957512.1_genomic.fna	Salmonella_enterica	0.521	273.992 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKME010000001.1 Salmonella enterica strain PNUSAS395932 SAMN38019437-rid19986603.denovo.01, whole genome shotgun sequence	512666..513103	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKME010000042.1 Salmonella enterica strain PNUSAS395932 SAMN38019437-rid19986603.guided.33, whole genome shotgun sequence	5122..5559	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOKME010000019.1 Salmonella enterica strain PNUSAS395932 SAMN38019437-rid19986603.denovo.19, whole genome shotgun sequence	37351..37993	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOKME010000019.1 Salmonella enterica strain PNUSAS395932 SAMN38019437-rid19986603.denovo.19, whole genome shotgun sequence	10979..11205																																																avrA	ABOKME010000011.1	93857..94727	99.196	871	0						
GCA_033125905.1_PDT001957511.1_genomic.fna	Salmonella_enterica	0.5212	469.87 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKMF010000001.1 Salmonella enterica strain PNUSAS395936 SAMN38019439-rid19981703.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKMF010000026.1 Salmonella enterica strain PNUSAS395936 SAMN38019439-rid19981703.guided.18, whole genome shotgun sequence	4404..4841	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKMF010000017.1 Salmonella enterica strain PNUSAS395936 SAMN38019439-rid19981703.denovo.17, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABOKMF010000017.1 Salmonella enterica strain PNUSAS395936 SAMN38019439-rid19981703.denovo.17, whole genome shotgun sequence	5032..5293																																																avrA	ABOKMF010000014.1	28834..29703	99.54	870	0						
GCA_033125985.1_PDT001957507.1_genomic.fna	Salmonella_enterica	0.5204	284.989 KB	6	aroC_2,dnaN_2,hemD_3,hisD_124,purE_2,sucA_2,thrA_6	435	9:f,g,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_124	purE	100	100	purE_2	sucA	100	100	sucA_2	thrA	100	100	thrA_6	9	f,g,t	-	Salmonella enterica subspecies enterica (subspecies I)	Berta		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOKMJ010000004.1 Salmonella enterica strain PNUSAS395931 SAMN38019444-rid19984093.denovo.04, whole genome shotgun sequence	149879..150316	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOKMJ010000038.1 Salmonella enterica strain PNUSAS395931 SAMN38019444-rid19984093.guided.29, whole genome shotgun sequence	7669..8106	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOKMJ010000021.1 Salmonella enterica strain PNUSAS395931 SAMN38019444-rid19984093.denovo.21, whole genome shotgun sequence	34957..35490	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOKMJ010000019.1 Salmonella enterica strain PNUSAS395931 SAMN38019444-rid19984093.denovo.19, whole genome shotgun sequence	80191..80332																																																avrA	ABOKMJ010000001.1	510395..511264	99.54	870	0						
GCA_033126005.1_PDT001957506.1_genomic.fna	Salmonella_enterica	0.5192	304.403 KB	7	aroC_42,dnaN_40,hemD_17,hisD_41,purE_33,sucA_36,thrA_41	80	9:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_40	hemD	100	100	hemD_17	hisD	100	100	hisD_41	purE	100	100	purE_33	sucA	100	100	sucA_36	thrA	100	100	thrA_41	9	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Miami		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKMK010000001.1 Salmonella enterica strain PNUSAS395933 SAMN38019443-rid19982513.denovo.01, whole genome shotgun sequence	520862..521299	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKMK010000044.1 Salmonella enterica strain PNUSAS395933 SAMN38019443-rid19982513.guided.26, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKMK010000006.1	140105..140974	99.31	870	0						
GCA_033126065.1_PDT001957505.1_genomic.fna	Salmonella_enterica	0.5205	488.502 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOKML010000001.1 Salmonella enterica strain PNUSAS395965 SAMN38019430-rid19985443.denovo.01, whole genome shotgun sequence	272755..273192	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOKML010000022.1 Salmonella enterica strain PNUSAS395965 SAMN38019430-rid19985443.guided.14, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKML010000004.1	160314..161183	99.54	870	0						
GCA_033126105.1_PDT001957501.1_genomic.fna	Salmonella_enterica	0.5208	230.847 KB	7	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOKMP010000001.1 Salmonella enterica strain PNUSAS395947 SAMN38019424-rid19981693.denovo.01, whole genome shotgun sequence	239428..239865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOKMP010000047.1 Salmonella enterica strain PNUSAS395947 SAMN38019424-rid19981693.guided.36, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOKMP010000035.1 Salmonella enterica strain PNUSAS395947 SAMN38019424-rid19981693.denovo.35, whole genome shotgun sequence	3423..4065	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOKMP010000031.1 Salmonella enterica strain PNUSAS395947 SAMN38019424-rid19981693.denovo.31, whole genome shotgun sequence	10978..11204																																																											
GCA_033126125.1_PDT001957500.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKMQ010000001.1 Salmonella enterica strain PNUSAS395921 SAMN38019413-rid19986573.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKMQ010000026.1 Salmonella enterica strain PNUSAS395921 SAMN38019413-rid19986573.guided.15, whole genome shotgun sequence	37251..37688	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKMQ010000014.1 Salmonella enterica strain PNUSAS395921 SAMN38019413-rid19986573.denovo.14, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOKMQ010000014.1 Salmonella enterica strain PNUSAS395921 SAMN38019413-rid19986573.denovo.14, whole genome shotgun sequence	5032..5293																																																avrA	ABOKMQ010000002.1	506088..506957	99.54	870	0						
GCA_033126145.1_PDT001957499.1_genomic.fna	Salmonella_enterica	0.5167	307.468 KB	5	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABOKMR010000003.1 Salmonella enterica strain PNUSAS395977 SAMN38019416-rid19976663.denovo.03, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABOKMR010000057.1 Salmonella enterica strain PNUSAS395977 SAMN38019416-rid19976663.guided.30, whole genome shotgun sequence	4407..4844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABOKMR010000009.1 Salmonella enterica strain PNUSAS395977 SAMN38019416-rid19976663.denovo.09, whole genome shotgun sequence	166749..167391																																																																	
GCA_033126165.1_PDT001957498.1_genomic.fna	Salmonella_enterica	0.5205	287.62 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKMS010000002.1 Salmonella enterica strain PNUSAS395915 SAMN38019409-rid19976653.denovo.02, whole genome shotgun sequence	317930..318367	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKMS010000052.1 Salmonella enterica strain PNUSAS395915 SAMN38019409-rid19976653.guided.23, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKMS010000001.1	183108..183977	98.966	870	0						
GCA_033126205.1_PDT001957496.1_genomic.fna	Salmonella_enterica	0.5185	279.759 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOKMU010000001.1 Salmonella enterica strain PNUSAS395935 SAMN38019410-rid19982783.denovo.01, whole genome shotgun sequence	694204..694641	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOKMU010000040.1 Salmonella enterica strain PNUSAS395935 SAMN38019410-rid19982783.guided.26, whole genome shotgun sequence	7146..7583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKMU010000004.1	93982..94851	99.425	870	0						
GCA_033126225.1_PDT001957495.1_genomic.fna	Salmonella_enterica	0.516	304.525 KB	7	aroC_30,dnaN_28,hemD_31,hisD_27,purE_22,sucA_29,thrA_30	433	48:g,z51:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_30	dnaN	100	100	dnaN_28	hemD	100	100	hemD_31	hisD	100	100	hisD_27	purE	100	100	purE_22	sucA	100	100	sucA_29	thrA	100	100	thrA_30	48	g,z51	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 48:g,z51:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	95.21	438/438	ABOKMV010000001.1 Salmonella enterica strain PNUSAS395924 SAMN38019411-rid19985433.denovo.01, whole genome shotgun sequence	4981..5418	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	95.21	438/438	ABOKMV010000051.1 Salmonella enterica strain PNUSAS395924 SAMN38019411-rid19985433.guided.20, whole genome shotgun sequence	4349..4786	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033126245.1_PDT001957494.1_genomic.fna	Salmonella_enterica	0.5208	529.845 KB	4	aroC_595,dnaN_42,hemD_43,hisD_58,purE_9,sucA_12,thrA_2	2870	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_595	dnaN	100	100	dnaN_42	hemD	100	100	hemD_43	hisD	100	100	hisD_58	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKMW010000001.1 Salmonella enterica strain PNUSAS395962 SAMN38019421-rid19980133.denovo.01, whole genome shotgun sequence	221023..221460	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKMW010000035.1 Salmonella enterica strain PNUSAS395962 SAMN38019421-rid19980133.guided.21, whole genome shotgun sequence	13835..14272	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOKMW010000021.1 Salmonella enterica strain PNUSAS395962 SAMN38019421-rid19980133.denovo.23, whole genome shotgun sequence	11459..12101																																																						avrA	ABOKMW010000005.1	39349..40218	99.425	870	0						
GCA_033126265.1_PDT001957493.1_genomic.fna	Salmonella_enterica	0.5215	478.472 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKMX010000001.1 Salmonella enterica strain PNUSAS395920 SAMN38019408-rid19973913.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKMX010000027.1 Salmonella enterica strain PNUSAS395920 SAMN38019408-rid19973913.guided.16, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKMX010000015.1 Salmonella enterica strain PNUSAS395920 SAMN38019408-rid19973913.denovo.15, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABOKMX010000015.1 Salmonella enterica strain PNUSAS395920 SAMN38019408-rid19973913.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOKMX010000002.1	553064..553933	99.54	870	0						
GCA_033126285.1_PDT001957492.1_genomic.fna	Salmonella_enterica	0.522	394.076 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKMY010000005.1 Salmonella enterica strain PNUSAS395955 SAMN38019403-rid19986563.denovo.05, whole genome shotgun sequence	255287..255724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKMY010000025.1 Salmonella enterica strain PNUSAS395955 SAMN38019403-rid19986563.guided.15, whole genome shotgun sequence	21586..22023	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKMY010000001.1	557591..558459	99.425	870	0						
GCA_033126305.1_PDT001957491.1_genomic.fna	Salmonella_enterica	0.5201	394.088 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKMZ010000001.1 Salmonella enterica strain PNUSAS395986 SAMN38019417-rid19981683.denovo.01, whole genome shotgun sequence	636663..637100	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKMZ010000052.1 Salmonella enterica strain PNUSAS395986 SAMN38019417-rid19981683.guided.20, whole genome shotgun sequence	24835..25272	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKMZ010000053.1 Salmonella enterica strain PNUSAS395986 SAMN38019417-rid19981683.guided.21, whole genome shotgun sequence	24835..25272	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	97.83	322 / 316	ABOKMZ010000015.1 Salmonella enterica strain PNUSAS395986 SAMN38019417-rid19981683.denovo.15, whole genome shotgun sequence	30951..31272																																																						avrA	ABOKMZ010000004.1	394792..395660	99.425	870	0						
GCA_033126325.1_PDT001957490.1_genomic.fna	Salmonella_enterica	0.5128	146.569 KB	10	aroC_380,dnaN_482,hemD_276,hisD_511,purE_240,sucA_360,thrA_208	2868	40:z4,z32:-	0		1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_380	dnaN	100	100	dnaN_482	hemD	100	100	hemD_276	hisD	100	100	hisD_511	purE	100	100	purE_240	sucA	100	100	sucA_360	thrA	100	100	thrA_208	40	z4,z32	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV [1],40:z4,z32:-	SalmID reports this as ssp VII, which has not been formally recognized.	O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOKNA010000043.1 Salmonella enterica strain PNUSAS395985 SAMN38019414-rid19986553.denovo.45, whole genome shotgun sequence	11445..12087																																																																	
GCA_033126345.1_PDT001957489.1_genomic.fna	Salmonella_enterica	0.5207	435.399 KB	4	aroC_210,dnaN_11,hemD_17,hisD_113,purE_33,sucA_107,thrA_4	2519	8:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_210	dnaN	100	100	dnaN_11	hemD	100	100	hemD_17	hisD	100	100	hisD_113	purE	100	100	purE_33	sucA	100	100	sucA_107	thrA	100	100	thrA_4	8	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Glostrup or Chomedey	The predicted serotypes share the same general formula: 8:z10:e,n,z15 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOKND010000001.1 Salmonella enterica strain PNUSAS395957 SAMN38019420-rid19976643.denovo.01, whole genome shotgun sequence	366027..366464	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOKND010000051.1 Salmonella enterica strain PNUSAS395957 SAMN38019420-rid19976643.guided.23, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOKND010000022.1 Salmonella enterica strain PNUSAS395957 SAMN38019420-rid19976643.denovo.24, whole genome shotgun sequence	17225..17867																																																																	
GCA_033126365.1_PDT001957488.1_genomic.fna	Salmonella_enterica	0.5212	406.225 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKNC010000004.1 Salmonella enterica strain PNUSAS395927 SAMN38019407-rid19975423.denovo.04, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKNC010000032.1 Salmonella enterica strain PNUSAS395927 SAMN38019407-rid19975423.guided.21, whole genome shotgun sequence	16533..16970	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKNC010000017.1 Salmonella enterica strain PNUSAS395927 SAMN38019407-rid19975423.denovo.17, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOKNC010000017.1 Salmonella enterica strain PNUSAS395927 SAMN38019407-rid19975423.denovo.17, whole genome shotgun sequence	4416..4677																																																avrA	ABOKNC010000001.1	553268..554137	99.54	870	0						
GCA_033126385.1_PDT001957487.1_genomic.fna	Salmonella_enterica	0.5212	365.034 KB	5	aroC_13,dnaN_127,hemD_92,hisD_113,purE_114,sucA_107,thrA_4	447	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_92	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKNB010000001.1 Salmonella enterica strain PNUSAS395923 SAMN38019412-rid19985423.denovo.01, whole genome shotgun sequence	415432..415869	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKNB010000034.1 Salmonella enterica strain PNUSAS395923 SAMN38019412-rid19985423.guided.26, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKNB010000009.1	140447..141316	99.54	870	0						
GCA_033126405.1_PDT001957486.1_genomic.fna	Salmonella_enterica	0.5201	234.337 KB	8	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKNE010000002.1 Salmonella enterica strain PNUSAS395925 SAMN38019404-rid19984073.denovo.02, whole genome shotgun sequence	226610..227047	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKNE010000045.1 Salmonella enterica strain PNUSAS395925 SAMN38019404-rid19984073.guided.30, whole genome shotgun sequence	29749..30186	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOKNE010000003.1 Salmonella enterica strain PNUSAS395925 SAMN38019404-rid19984073.denovo.03, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOKNE010000047.1 Salmonella enterica strain PNUSAS395925 SAMN38019404-rid19984073.guided.35, whole genome shotgun sequence	5482..5904	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKNE010000001.1	169358..170227	99.195	870	0						
GCA_033126425.1_PDT001957485.1_genomic.fna	Salmonella_enterica	0.5211	405.996 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKNF010000001.1 Salmonella enterica strain PNUSAS395975 SAMN38019419-rid19985413.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKNF010000031.1 Salmonella enterica strain PNUSAS395975 SAMN38019419-rid19985413.guided.18, whole genome shotgun sequence	11053..11490	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKNF010000016.1 Salmonella enterica strain PNUSAS395975 SAMN38019419-rid19985413.denovo.16, whole genome shotgun sequence	47948..48590	enterobacteriales	IncFII(S)	100	262 / 262	ABOKNF010000016.1 Salmonella enterica strain PNUSAS395975 SAMN38019419-rid19985413.denovo.16, whole genome shotgun sequence	3704..3965																																																avrA	ABOKNF010000013.1	28834..29703	99.54	870	0						
GCA_033126445.1_PDT001957484.1_genomic.fna	Salmonella_enterica	0.5212	366.629 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKNG010000001.1 Salmonella enterica strain PNUSAS395922 SAMN38019415-rid19980123.denovo.01, whole genome shotgun sequence	443174..443611	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKNG010000034.1 Salmonella enterica strain PNUSAS395922 SAMN38019415-rid19980123.guided.25, whole genome shotgun sequence	12940..13377	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKNG010000019.1	39345..40213	99.195	870	0						
GCA_033126465.1_PDT001957483.1_genomic.fna	Salmonella_enterica	0.5232	397.01 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKNH010000001.1 Salmonella enterica strain PNUSAS395991 SAMN38019406-rid19975413.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKNH010000036.1 Salmonella enterica strain PNUSAS395991 SAMN38019406-rid19975413.guided.27, whole genome shotgun sequence	4955..5392	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKNH010000003.1	39424..40293	99.655	870	0						
GCA_033126505.1_PDT001957476.1_genomic.fna	Salmonella_enterica	0.5116	267.678 KB	7	aroC_451,dnaN_26,hemD_339,hisD_460,purE_21,sucA_353,thrA_471	2631	48:z52:z	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_451	dnaN	100	100	dnaN_26	hemD	100	100	hemD_339	hisD	100	100	hisD_460	purE	100	100	purE_21	sucA	100	100	sucA_353	thrA	100	100	thrA_471	48	z52	z	Salmonella enterica subspecies diarizonae (subspecies IIIb)	IIIb 48:z52:z		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKNM010000011.1 Salmonella enterica strain PNUSAS395989 SAMN38019400-rid19984063.denovo.11, whole genome shotgun sequence	117565..118002	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKNM010000051.1 Salmonella enterica strain PNUSAS395989 SAMN38019400-rid19984063.guided.34, whole genome shotgun sequence	8308..8745	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKNM010000008.1	38505..39374	96.552	870	0						
GCA_033126545.1_PDT001957478.1_genomic.fna	Salmonella_enterica	0.5218	639.395 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKNK010000001.1 Salmonella enterica strain PNUSAS395950 SAMN38019397-rid19976623.denovo.01, whole genome shotgun sequence	510589..511026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKNK010000022.1 Salmonella enterica strain PNUSAS395950 SAMN38019397-rid19976623.guided.16, whole genome shotgun sequence	17520..17957	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKNK010000003.1	544174..545042	99.425	870	0						
GCA_033126565.1_PDT001957479.1_genomic.fna	Salmonella_enterica	0.5214	379.572 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOKNJ010000001.1 Salmonella enterica strain PNUSAS395969 SAMN38019398-rid19976633.denovo.01, whole genome shotgun sequence	630476..630913	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOKNJ010000040.1 Salmonella enterica strain PNUSAS395969 SAMN38019398-rid19976633.guided.24, whole genome shotgun sequence	14357..14794	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOKNJ010000021.1 Salmonella enterica strain PNUSAS395969 SAMN38019398-rid19976633.denovo.21, whole genome shotgun sequence	21146..21788	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOKNJ010000024.1 Salmonella enterica strain PNUSAS395969 SAMN38019398-rid19976633.denovo.25, whole genome shotgun sequence	10978..11204																																																											
GCA_033126585.1_PDT001957482.1_genomic.fna	Salmonella_enterica	0.5212	703.286 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOKNI010000004.1 Salmonella enterica strain PNUSAS395926 SAMN38019405-rid19986543.denovo.04, whole genome shotgun sequence	268870..269307	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOKNI010000023.1 Salmonella enterica strain PNUSAS395926 SAMN38019405-rid19986543.guided.18, whole genome shotgun sequence	7418..7855	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKNI010000003.1	160347..161216	99.54	870	0						
GCA_033126605.1_PDT001957477.1_genomic.fna	Salmonella_enterica	0.5205	228.021 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		4	IncFIB(S),IncFII(S),IncI1-I(Alpha),IncI2(Delta)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKNL010000002.1 Salmonella enterica strain PNUSAS395976 SAMN38019401-rid19978683.denovo.02, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKNL010000058.1 Salmonella enterica strain PNUSAS395976 SAMN38019401-rid19978683.guided.36, whole genome shotgun sequence	4526..4963	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOKNL010000016.1 Salmonella enterica strain PNUSAS395976 SAMN38019401-rid19978683.denovo.16, whole genome shotgun sequence	14681..15323	enterobacteriales	IncFII(S)	100	262 / 262	ABOKNL010000016.1 Salmonella enterica strain PNUSAS395976 SAMN38019401-rid19978683.denovo.16, whole genome shotgun sequence	30408..30669		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOKNL010000017.1 Salmonella enterica strain PNUSAS395976 SAMN38019401-rid19978683.denovo.17, whole genome shotgun sequence	77355..77496		enterobacteriales	IncI2(Delta)	98.1	316 / 316	ABOKNL010000028.1 Salmonella enterica strain PNUSAS395976 SAMN38019401-rid19978683.denovo.28, whole genome shotgun sequence	29970..30285																																		avrA	ABOKNL010000003.1	209086..209954	100	869	0						
GCA_033126625.1_PDT001957474.1_genomic.fna	Salmonella_enterica	0.5215	532.196 KB	4	aroC_22,dnaN_11,hemD_25,hisD_21,purE_10,sucA_23,thrA_23	48	9:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_22	dnaN	100	100	dnaN_11	hemD	100	100	hemD_25	hisD	100	100	hisD_21	purE	100	100	purE_10	sucA	100	100	sucA_23	thrA	100	100	thrA_23	9	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Panama		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOKNO010000010.1 Salmonella enterica strain PNUSAS395954 SAMN38019402-rid19980113.denovo.10, whole genome shotgun sequence	70924..71361	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOKNO010000034.1 Salmonella enterica strain PNUSAS395954 SAMN38019402-rid19980113.guided.22, whole genome shotgun sequence	16407..16844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOKNO010000013.1 Salmonella enterica strain PNUSAS395954 SAMN38019402-rid19980113.denovo.13, whole genome shotgun sequence	15902..16043																																																						avrA	ABOKNO010000002.1	94228..95097	98.966	870	0						
GCA_033126645.1_PDT001957475.1_genomic.fna	Salmonella_enterica	0.5232	397.464 KB	5	aroC_46,dnaN_54,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	127	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_54	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOKNN010000004.1 Salmonella enterica strain PNUSAS395944 SAMN38019375-rid19985403.denovo.04, whole genome shotgun sequence	256215..256652	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOKNN010000032.1 Salmonella enterica strain PNUSAS395944 SAMN38019375-rid19985403.guided.21, whole genome shotgun sequence	12696..13133	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKNN010000001.1	408015..408884	99.31	870	0						
GCA_033126665.1_PDT001957473.1_genomic.fna	Salmonella_enterica	0.5214	204.712 KB	8	aroC_13,dnaN_109,hemD_49,hisD_13,purE_220,sucA_13,thrA_4	754	30:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_220	sucA	100	100	sucA_13	thrA	100	100	thrA_4	30	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Urbana		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOKNP010000004.1 Salmonella enterica strain PNUSAS395994 SAMN38019399-rid19973903.denovo.04, whole genome shotgun sequence	6566..7003	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOKNP010000091.1 Salmonella enterica strain PNUSAS395994 SAMN38019399-rid19973903.guided.48, whole genome shotgun sequence	6398..6835	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABOKNP010000025.1 Salmonella enterica strain PNUSAS395994 SAMN38019399-rid19973903.denovo.25, whole genome shotgun sequence	14955..15597	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOKNP010000019.1 Salmonella enterica strain PNUSAS395994 SAMN38019399-rid19973903.denovo.19, whole genome shotgun sequence	69705..69846																																																avrA	ABOKNP010000001.1	95290..96159	99.425	870	0						
GCA_033126685.1_PDT001957471.1_genomic.fna	Salmonella_enterica	0.5213	203.759 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKNR010000001.1 Salmonella enterica strain PNUSAS395993 SAMN38019396-rid19981663.denovo.01, whole genome shotgun sequence	573956..574393	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKNR010000028.1 Salmonella enterica strain PNUSAS395993 SAMN38019396-rid19981663.denovo.31, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKNR010000028.1 Salmonella enterica strain PNUSAS395993 SAMN38019396-rid19981663.denovo.31, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOKNR010000055.1 Salmonella enterica strain PNUSAS395993 SAMN38019396-rid19981663.guided.18, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKNR010000057.1 Salmonella enterica strain PNUSAS395993 SAMN38019396-rid19981663.guided.30, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKNR010000057.1 Salmonella enterica strain PNUSAS395993 SAMN38019396-rid19981663.guided.30, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABOKNR010000042.1 Salmonella enterica strain PNUSAS395993 SAMN38019396-rid19981663.denovo.46, whole genome shotgun sequence	599..1474	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOKNR010000059.1 Salmonella enterica strain PNUSAS395993 SAMN38019396-rid19981663.guided.50, whole genome shotgun sequence	589..1464	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	sul1	100	840/840	ABOKNR010000028.1 Salmonella enterica strain PNUSAS395993 SAMN38019396-rid19981663.denovo.31, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOKNR010000057.1 Salmonella enterica strain PNUSAS395993 SAMN38019396-rid19981663.guided.30, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOKNR010000028.1 Salmonella enterica strain PNUSAS395993 SAMN38019396-rid19981663.denovo.31, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOKNR010000057.1 Salmonella enterica strain PNUSAS395993 SAMN38019396-rid19981663.guided.30, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOKNR010000033.1 Salmonella enterica strain PNUSAS395993 SAMN38019396-rid19981663.denovo.37, whole genome shotgun sequence	9109..9668																																																						avrA	ABOKNR010000010.1	39430..40299	99.655	870	0						
GCA_033126705.1_PDT001957472.1_genomic.fna	Salmonella_enterica	0.5219	205.558 KB	7	aroC_13,dnaN_109,hemD_49,hisD_13,purE_220,sucA_13,thrA_4	754	30:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_109	hemD	100	100	hemD_49	hisD	100	100	hisD_13	purE	100	100	purE_220	sucA	100	100	sucA_13	thrA	100	100	thrA_4	30	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Urbana		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOKNQ010000021.1 Salmonella enterica strain PNUSAS395953 SAMN38019393-rid19980103.denovo.21, whole genome shotgun sequence	11227..11664	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOKNQ010000080.1 Salmonella enterica strain PNUSAS395953 SAMN38019393-rid19980103.guided.42, whole genome shotgun sequence	2805..3242	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABOKNQ010000028.1 Salmonella enterica strain PNUSAS395953 SAMN38019393-rid19980103.denovo.29, whole genome shotgun sequence	17827..18469																																																						avrA	ABOKNQ010000002.1	95245..96114	99.425	870	0						
GCA_033126725.1_PDT001957468.1_genomic.fna	Salmonella_enterica	0.5181	219.645 KB	7	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncY	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOKNU010000001.1 Salmonella enterica strain PNUSAS395951 SAMN38019374-rid19976613.denovo.01, whole genome shotgun sequence	486110..486547	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOKNU010000038.1 Salmonella enterica strain PNUSAS395951 SAMN38019374-rid19976613.guided.24, whole genome shotgun sequence	2730..3167	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOKNU010000010.1 Salmonella enterica strain PNUSAS395951 SAMN38019374-rid19976613.denovo.10, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOKNU010000039.1 Salmonella enterica strain PNUSAS395951 SAMN38019374-rid19976613.guided.31, whole genome shotgun sequence	6488..6910	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncY	99.74	765 / 765	ABOKNU010000018.1 Salmonella enterica strain PNUSAS395951 SAMN38019374-rid19976613.denovo.18, whole genome shotgun sequence	88723..89487																																																						avrA	ABOKNU010000002.1	150431..151300	99.195	870	0						
GCA_033126745.1_PDT001957470.1_genomic.fna	Salmonella_enterica	0.5193	300.246 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKNS010000001.1 Salmonella enterica strain PNUSAS395963 SAMN38019388-rid19986533.denovo.01, whole genome shotgun sequence	486124..486561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKNS010000041.1 Salmonella enterica strain PNUSAS395963 SAMN38019388-rid19986533.guided.22, whole genome shotgun sequence	41841..42278	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOKNS010000002.1 Salmonella enterica strain PNUSAS395963 SAMN38019388-rid19986533.denovo.02, whole genome shotgun sequence	388370..388792	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOKNS010000043.1 Salmonella enterica strain PNUSAS395963 SAMN38019388-rid19986533.guided.32, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOKNS010000017.1 Salmonella enterica strain PNUSAS395963 SAMN38019388-rid19986533.denovo.17, whole genome shotgun sequence	68654..68795																																																						avrA	ABOKNS010000004.1	39347..40216	99.195	870	0						
GCA_033126765.1_PDT001957469.1_genomic.fna	Salmonella_enterica	0.5218	214.451 KB	7	aroC_14,dnaN_14,hemD_21,hisD_172,purE_5,sucA_19,thrA_17	2166	9,46:a:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFIB(pB171),IncFII(S),IncFII(SARC14)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_14	hemD	100	100	hemD_21	hisD	100	100	hisD_172	purE	100	100	purE_5	sucA	100	100	sucA_19	thrA	100	100	thrA_17	9,46	a	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Baildon		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKNT010000004.1 Salmonella enterica strain PNUSAS395958 SAMN38019382-rid19978673.denovo.04, whole genome shotgun sequence	139980..140417	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKNT010000038.1 Salmonella enterica strain PNUSAS395958 SAMN38019382-rid19978673.guided.26, whole genome shotgun sequence	21716..22153	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOKNT010000011.1 Salmonella enterica strain PNUSAS395958 SAMN38019382-rid19978673.denovo.11, whole genome shotgun sequence	38587..39229	enterobacteriales	IncFII(S)	94.82	251 / 262	ABOKNT010000024.1 Salmonella enterica strain PNUSAS395958 SAMN38019382-rid19978673.denovo.24, whole genome shotgun sequence	20338..20585		enterobacteriales	IncFII(SARC14)	95.52	446 / 445	ABOKNT010000024.1 Salmonella enterica strain PNUSAS395958 SAMN38019382-rid19978673.denovo.24, whole genome shotgun sequence	19634..20078																																									avrA	ABOKNT010000001.1	510684..511553	99.77	870	0						
GCA_033126785.1_PDT001957467.1_genomic.fna	Salmonella_enterica	0.5184	393.933 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOKNW010000001.1 Salmonella enterica strain PNUSAS395948 SAMN38019367-rid19978663.denovo.01, whole genome shotgun sequence	692281..692718	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOKNW010000038.1 Salmonella enterica strain PNUSAS395948 SAMN38019367-rid19978663.guided.25, whole genome shotgun sequence	3726..4163	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKNW010000005.1	93982..94851	99.425	870	0						
GCA_033126805.1_PDT001957466.1_genomic.fna	Salmonella_enterica	0.5211	720.929 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOKNV010000002.1 Salmonella enterica strain PNUSAS395972 SAMN38019378-rid19988453.denovo.02, whole genome shotgun sequence	714828..715265	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOKNV010000019.1 Salmonella enterica strain PNUSAS395972 SAMN38019378-rid19988453.guided.12, whole genome shotgun sequence	8263..8700	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKNV010000004.1	160349..161218	99.54	870	0						
GCA_033126825.1_PDT001957465.1_genomic.fna	Salmonella_enterica	0.5208	570.678 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKNX010000001.1 Salmonella enterica strain PNUSAS395919 SAMN38019379-rid19985393.denovo.01, whole genome shotgun sequence	149577..150014	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKNX010000024.1 Salmonella enterica strain PNUSAS395919 SAMN38019379-rid19985393.guided.15, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033126845.1_PDT001957463.1_genomic.fna	Salmonella_enterica	0.5213	480.935 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKNY010000001.1 Salmonella enterica strain PNUSAS395939 SAMN38019372-rid19975403.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKNY010000024.1 Salmonella enterica strain PNUSAS395939 SAMN38019372-rid19975403.guided.18, whole genome shotgun sequence	6926..7363	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKNY010000015.1 Salmonella enterica strain PNUSAS395939 SAMN38019372-rid19975403.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOKNY010000015.1 Salmonella enterica strain PNUSAS395939 SAMN38019372-rid19975403.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOKNY010000002.1	553077..553946	99.54	870	0						
GCA_033126865.1_PDT001957464.1_genomic.fna	Salmonella_enterica	0.5205	211.88 KB	8	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOKNZ010000003.1 Salmonella enterica strain PNUSAS395973 SAMN38019389-rid19980093.denovo.03, whole genome shotgun sequence	239428..239865	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOKNZ010000049.1 Salmonella enterica strain PNUSAS395973 SAMN38019389-rid19980093.guided.32, whole genome shotgun sequence	12438..12875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOKNZ010000024.1 Salmonella enterica strain PNUSAS395973 SAMN38019389-rid19980093.denovo.24, whole genome shotgun sequence	48582..49224	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOKNZ010000032.1 Salmonella enterica strain PNUSAS395973 SAMN38019389-rid19980093.denovo.34, whole genome shotgun sequence	10978..11204																																																											
GCA_033126885.1_PDT001957462.1_genomic.fna	Salmonella_enterica	0.5191	203.714 KB	8	aroC_13,dnaN_127,hemD_48,hisD_113,purE_41,sucA_23,thrA_4	964	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_48	hisD	100	100	hisD_113	purE	100	100	purE_41	sucA	100	100	sucA_23	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOKOA010000016.1 Salmonella enterica strain PNUSAS395970 SAMN38019392-rid19981653.denovo.16, whole genome shotgun sequence	80553..80990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOKOA010000096.1 Salmonella enterica strain PNUSAS395970 SAMN38019392-rid19981653.guided.30, whole genome shotgun sequence	9118..9555	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.91	643 / 643	ABOKOA010000028.1 Salmonella enterica strain PNUSAS395970 SAMN38019392-rid19981653.denovo.29, whole genome shotgun sequence	17375..18017																																																						avrA	ABOKOA010000006.1	160128..160997	99.311	871	0						
GCA_033126905.1_PDT001957460.1_genomic.fna	Salmonella_enterica	0.5199	308.109 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKOC010000001.1 Salmonella enterica strain PNUSAS395941 SAMN38019383-rid19987283.denovo.01, whole genome shotgun sequence	134338..134775	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKOC010000038.1 Salmonella enterica strain PNUSAS395941 SAMN38019383-rid19987283.guided.31, whole genome shotgun sequence	9420..9857	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOKOC010000003.1 Salmonella enterica strain PNUSAS395941 SAMN38019383-rid19987283.denovo.03, whole genome shotgun sequence	388368..388790	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOKOC010000037.1 Salmonella enterica strain PNUSAS395941 SAMN38019383-rid19987283.guided.30, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKOC010000002.1	122302..123171	99.195	870	0						
GCA_033126925.1_PDT001957461.1_genomic.fna	Salmonella_enterica	0.5216	298.792 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKOB010000001.1 Salmonella enterica strain PNUSAS395980 SAMN38019380-rid19982503.denovo.01, whole genome shotgun sequence	443022..443459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKOB010000044.1 Salmonella enterica strain PNUSAS395980 SAMN38019380-rid19982503.guided.25, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKOB010000008.1	225622..226490	99.195	870	0						
GCA_033126945.1_PDT001957458.1_genomic.fna	Salmonella_enterica	0.5211	476.57 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKOD010000001.1 Salmonella enterica strain PNUSAS395990 SAMN38019384-rid19976603.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKOD010000024.1 Salmonella enterica strain PNUSAS395990 SAMN38019384-rid19976603.guided.16, whole genome shotgun sequence	690..1127	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKOD010000015.1 Salmonella enterica strain PNUSAS395990 SAMN38019384-rid19976603.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOKOD010000015.1 Salmonella enterica strain PNUSAS395990 SAMN38019384-rid19976603.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOKOD010000002.1	553015..553884	99.54	870	0						
GCA_033126965.1_PDT001957457.1_genomic.fna	Salmonella_enterica	0.5211	709.035 KB	3	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOKOF010000001.1 Salmonella enterica strain PNUSAS395967 SAMN38019385-rid19978643.denovo.01, whole genome shotgun sequence	722284..722721	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOKOF010000019.1 Salmonella enterica strain PNUSAS395967 SAMN38019385-rid19978643.guided.13, whole genome shotgun sequence	3088..3525	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKOF010000003.1	160292..161161	99.54	870	0						
GCA_033127005.1_PDT001957459.1_genomic.fna	Salmonella_enterica	0.5222	762.374 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKOE010000001.1 Salmonella enterica strain PNUSAS395974 SAMN38019369-rid19978653.denovo.01, whole genome shotgun sequence	481949..482386	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKOE010000020.1 Salmonella enterica strain PNUSAS395974 SAMN38019369-rid19978653.guided.11, whole genome shotgun sequence	12679..13116	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKOE010000004.1	553600..554469	99.77	870	0						
GCA_033127025.1_PDT001957455.1_genomic.fna	Salmonella_enterica	0.5166	271.666 KB	7	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABOKOH010000006.1 Salmonella enterica strain PNUSAS395978 SAMN38019370-rid19985383.denovo.06, whole genome shotgun sequence	197676..198113	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABOKOH010000071.1 Salmonella enterica strain PNUSAS395978 SAMN38019370-rid19985383.guided.36, whole genome shotgun sequence	4407..4844	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABOKOH010000012.1 Salmonella enterica strain PNUSAS395978 SAMN38019370-rid19985383.denovo.12, whole genome shotgun sequence	11196..11838	enterobacteriales	IncFII(pMET)	90.58	584 / 577	ABOKOH010000030.1 Salmonella enterica strain PNUSAS395978 SAMN38019370-rid19985383.denovo.32, whole genome shotgun sequence	18875..19457																																																											
GCA_033127045.1_PDT001957456.1_genomic.fna	Salmonella_enterica	0.5197	399.518 KB	5	aroC_210,dnaN_11,hemD_17,hisD_113,purE_33,sucA_107,thrA_4	2519	8:z10:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_210	dnaN	100	100	dnaN_11	hemD	100	100	hemD_17	hisD	100	100	hisD_113	purE	100	100	purE_33	sucA	100	100	sucA_107	thrA	100	100	thrA_4	8	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Glostrup or Chomedey	The predicted serotypes share the same general formula: 8:z10:e,n,z15 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOKOG010000001.1 Salmonella enterica strain PNUSAS395916 SAMN38019377-rid19988443.denovo.01, whole genome shotgun sequence	631714..632151	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOKOG010000053.1 Salmonella enterica strain PNUSAS395916 SAMN38019377-rid19988443.guided.24, whole genome shotgun sequence	17605..18042	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOKOG010000015.1 Salmonella enterica strain PNUSAS395916 SAMN38019377-rid19988443.denovo.15, whole genome shotgun sequence	17225..17867																																																																	
GCA_033127065.1_PDT001957454.1_genomic.fna	Salmonella_enterica	0.5184	393.615 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOKOI010000001.1 Salmonella enterica strain PNUSAS395938 SAMN38019368-rid19980083.denovo.01, whole genome shotgun sequence	694204..694641	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOKOI010000037.1 Salmonella enterica strain PNUSAS395938 SAMN38019368-rid19980083.guided.15, whole genome shotgun sequence	11218..11655	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKOI010000006.1	39480..40349	99.425	870	0						
GCA_033127085.1_PDT001957453.1_genomic.fna	Salmonella_enterica	0.5226	388.762 KB	5	aroC_543,dnaN_69,hemD_101,hisD_12,purE_370,sucA_130,thrA_347	2553	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_543	dnaN	100	100	dnaN_69	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_370	sucA	100	100	sucA_130	thrA	100	100	thrA_347	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOKOJ010000004.1 Salmonella enterica strain PNUSAS395929 SAMN38019381-rid19975393.denovo.04, whole genome shotgun sequence	247485..247922	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOKOJ010000033.1 Salmonella enterica strain PNUSAS395929 SAMN38019381-rid19975393.guided.21, whole genome shotgun sequence	11701..12138	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKOJ010000002.1	514136..515005	99.31	870	0						
GCA_033127105.1_PDT001957452.1_genomic.fna	Salmonella_enterica	0.5202	469.763 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKOK010000001.1 Salmonella enterica strain PNUSAS395964 SAMN38019387-rid19980073.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKOK010000025.1 Salmonella enterica strain PNUSAS395964 SAMN38019387-rid19980073.guided.19, whole genome shotgun sequence	7057..7494	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABOKOK010000015.1 Salmonella enterica strain PNUSAS395964 SAMN38019387-rid19980073.denovo.15, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOKOK010000015.1 Salmonella enterica strain PNUSAS395964 SAMN38019387-rid19980073.denovo.15, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABOKOK010000016.1 Salmonella enterica strain PNUSAS395964 SAMN38019387-rid19980073.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABOKOK010000008.1	174806..175675	99.54	870	0						
GCA_033127125.1_PDT001957450.1_genomic.fna	Salmonella_enterica	0.522	314.943 KB	5	aroC_43,dnaN_41,hemD_16,hisD_42,purE_35,sucA_13,thrA_4	81	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_35	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKOM010000001.1 Salmonella enterica strain PNUSAS395949 SAMN38019371-rid19987273.denovo.01, whole genome shotgun sequence	169627..170064	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKOM010000057.1 Salmonella enterica strain PNUSAS395949 SAMN38019371-rid19987273.guided.19, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033127145.1_PDT001957451.1_genomic.fna	Salmonella_enterica	0.5225	286.627 KB	6	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKOL010000003.1 Salmonella enterica strain PNUSAS395937 SAMN38019390-rid19982493.denovo.03, whole genome shotgun sequence	173853..174290	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKOL010000037.1 Salmonella enterica strain PNUSAS395937 SAMN38019390-rid19982493.guided.26, whole genome shotgun sequence	1718..2155	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKOL010000001.1	147123..147992	98.966	870	0						
GCA_033127165.1_PDT001957449.1_genomic.fna	Salmonella_enterica	0.5211	738.552 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKON010000001.1 Salmonella enterica strain PNUSAS395934 SAMN38019376-rid19981643.denovo.01, whole genome shotgun sequence	510588..511025	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKON010000019.1 Salmonella enterica strain PNUSAS395934 SAMN38019376-rid19981643.guided.15, whole genome shotgun sequence	8953..9390	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKON010000002.1	726186..727054	99.425	870	0						
GCA_033127185.1_PDT001957448.1_genomic.fna	Salmonella_enterica	0.523	263.626 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKOO010000001.1 Salmonella enterica strain PNUSAS395945 SAMN38019391-rid19976593.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKOO010000033.1 Salmonella enterica strain PNUSAS395945 SAMN38019391-rid19976593.guided.21, whole genome shotgun sequence	13625..14062	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKOO010000003.1	39430..40299	99.655	870	0						
GCA_033127205.1_PDT001957447.1_genomic.fna	Salmonella_enterica	0.5212	469.751 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKOP010000001.1 Salmonella enterica strain PNUSAS395946 SAMN38019373-rid19980063.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKOP010000029.1 Salmonella enterica strain PNUSAS395946 SAMN38019373-rid19980063.guided.20, whole genome shotgun sequence	13794..14231	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKOP010000016.1 Salmonella enterica strain PNUSAS395946 SAMN38019373-rid19980063.denovo.16, whole genome shotgun sequence	49276..49918	enterobacteriales	IncFII(S)	100	262 / 262	ABOKOP010000016.1 Salmonella enterica strain PNUSAS395946 SAMN38019373-rid19980063.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABOKOP010000007.1	174749..175618	99.54	870	0						
GCA_033127225.1_PDT001957446.1_genomic.fna	Salmonella_enterica	0.521	385.453 KB	4	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(Yp)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOKOQ010000001.1 Salmonella enterica strain PNUSAS395956 SAMN38019386-rid19981633.denovo.01, whole genome shotgun sequence	625294..625731	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOKOQ010000039.1 Salmonella enterica strain PNUSAS395956 SAMN38019386-rid19981633.guided.25, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.82	643 / 643	ABOKOQ010000026.1 Salmonella enterica strain PNUSAS395956 SAMN38019386-rid19981633.denovo.29, whole genome shotgun sequence	6368..7010	enterobacteriales	IncFII(Yp)	93.51	231 / 230	ABOKOQ010000024.1 Salmonella enterica strain PNUSAS395956 SAMN38019386-rid19981633.denovo.24, whole genome shotgun sequence	10976..11202																																																											
GCA_033127245.1_PDT001957444.1_genomic.fna	Salmonella_enterica	0.5225	299.34 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKOS010000001.1 Salmonella enterica strain PNUSAS395952 SAMN38019360-rid19981623.denovo.01, whole genome shotgun sequence	790293..790730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKOS010000032.1 Salmonella enterica strain PNUSAS395952 SAMN38019360-rid19981623.guided.21, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKOS010000002.1	94005..94874	98.966	870	0						
GCA_033127265.1_PDT001957445.1_genomic.fna	Salmonella_enterica	0.5211	522.923 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOKOR010000001.1 Salmonella enterica strain PNUSAS395992 SAMN38019364-rid19986523.denovo.01, whole genome shotgun sequence	305918..306355	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOKOR010000023.1 Salmonella enterica strain PNUSAS395992 SAMN38019364-rid19986523.guided.14, whole genome shotgun sequence	11203..11640	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKOR010000002.1	160314..161183	99.54	870	0						
GCA_033127305.1_PDT001957442.1_genomic.fna	Salmonella_enterica	0.5203	274.718 KB	7	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKOU010000001.1 Salmonella enterica strain PNUSAS395918 SAMN38019365-rid19976583.denovo.01, whole genome shotgun sequence	419430..419867	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKOU010000059.1 Salmonella enterica strain PNUSAS395918 SAMN38019365-rid19976583.guided.27, whole genome shotgun sequence	300..737	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKOU010000012.1	130473..131343	99.196	871	0						
GCA_033127325.1_PDT001957443.1_genomic.fna	Salmonella_enterica	0.5218	491.231 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKOT010000001.1 Salmonella enterica strain PNUSAS395982 SAMN38019366-rid19975383.denovo.01, whole genome shotgun sequence	510630..511067	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKOT010000038.1 Salmonella enterica strain PNUSAS395982 SAMN38019366-rid19975383.guided.24, whole genome shotgun sequence	8108..8545	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKOT010000003.1	394816..395684	99.425	870	0						
GCA_033127345.1_PDT001957441.1_genomic.fna	Salmonella_enterica	0.5226	286.627 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKOV010000001.1 Salmonella enterica strain PNUSAS395959 SAMN38019362-rid19982773.denovo.01, whole genome shotgun sequence	517922..518359	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKOV010000030.1 Salmonella enterica strain PNUSAS395959 SAMN38019362-rid19982773.guided.17, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKOV010000002.1	28833..29702	98.966	870	0						
GCA_033127355.1_PDT001957440.1_genomic.fna	Salmonella_enterica	0.5215	684.737 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKOW010000001.1 Salmonella enterica strain PNUSAS395971 SAMN38019363-rid19984053.denovo.01, whole genome shotgun sequence	596451..596888	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKOW010000021.1 Salmonella enterica strain PNUSAS395971 SAMN38019363-rid19984053.guided.11, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKOW010000004.1	406353..407221	99.425	870	0						
GCA_033127385.1_PDT001957439.1_genomic.fna	Salmonella_enterica	0.5217	416.92 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKOX010000002.1 Salmonella enterica strain PNUSAS395966 SAMN38019361-rid19982483.denovo.02, whole genome shotgun sequence	173788..174225	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKOX010000031.1 Salmonella enterica strain PNUSAS395966 SAMN38019361-rid19982483.guided.23, whole genome shotgun sequence	222..659	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKOX010000003.1	95178..96047	98.966	870	0						
GCA_033127425.1_PDT001957438.1_genomic.fna	Salmonella_enterica	0.5225	129.411 KB	11	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	-:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	-	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:k:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOKOY010000001.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12326063 SAMN38019329-rid19973893.denovo.01, whole genome shotgun sequence	131820..132257	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOKOY010000082.1 Salmonella enterica subsp. enterica serovar Thompson strain FSIS12326063 SAMN38019329-rid19973893.guided.58, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKOY010000004.1	102539..103408	99.77	870	0						
GCA_033127445.1_PDT001957436.1_genomic.fna	Salmonella_enterica	0.5215	164.952 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKPA010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326085 SAMN38019331-rid19981613.denovo.01, whole genome shotgun sequence	384203..384640	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKPA010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326085 SAMN38019331-rid19981613.denovo.35, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKPA010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326085 SAMN38019331-rid19981613.denovo.35, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOKPA010000072.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326085 SAMN38019331-rid19981613.guided.39, whole genome shotgun sequence	17755..18192	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKPA010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326085 SAMN38019331-rid19981613.guided.53, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKPA010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326085 SAMN38019331-rid19981613.guided.53, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOKPA010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326085 SAMN38019331-rid19981613.denovo.35, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOKPA010000075.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326085 SAMN38019331-rid19981613.guided.53, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOKPA010000035.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326085 SAMN38019331-rid19981613.denovo.35, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOKPA010000073.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326085 SAMN38019331-rid19981613.guided.46, whole genome shotgun sequence	9038..10237	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOKPA010000027.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326085 SAMN38019331-rid19981613.denovo.27, whole genome shotgun sequence	36951..37510																																																						avrA	ABOKPA010000008.1	95321..96190	99.655	870	0						
GCA_033127465.1_PDT001957434.1_genomic.fna	Salmonella_enterica	0.5189	60.064 KB	27	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	3	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,tet(B),tet(B)	1	parC_p.T57S	6	Col(MG828),Col(pHAD28),Col440I,IncFIA(HI1),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKPB010000003.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12326056 SAMN38018666-rid19981603.denovo.003, whole genome shotgun sequence	105680..106117	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKPB010000182.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12326056 SAMN38018666-rid19981603.guided.091, whole genome shotgun sequence	14221..14658	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOKPB010000142.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12326056 SAMN38018666-rid19981603.denovo.147, whole genome shotgun sequence	361..1221	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOKPB010000184.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12326056 SAMN38018666-rid19981603.guided.146, whole genome shotgun sequence	602..1462	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	tet(B)	99.92	1206/1206	ABOKPB010000114.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12326056 SAMN38018666-rid19981603.denovo.117, whole genome shotgun sequence	2425..3630	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	99.92	1206/1206	ABOKPB010000183.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12326056 SAMN38018666-rid19981603.guided.133, whole genome shotgun sequence	1366..2571	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(MG828)	95	260 / 262	ABOKPB010000143.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12326056 SAMN38018666-rid19981603.denovo.148, whole genome shotgun sequence	20..279	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOKPB010000130.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12326056 SAMN38018666-rid19981603.denovo.134, whole genome shotgun sequence	1480..1610		enterobacteriales	Col440I	94.74	114 / 114	ABOKPB010000131.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12326056 SAMN38018666-rid19981603.denovo.135, whole genome shotgun sequence	336..449		enterobacteriales	IncFIA(HI1)	100	388 / 388	ABOKPB010000102.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12326056 SAMN38018666-rid19981603.denovo.105, whole genome shotgun sequence	1027..1414		enterobacteriales	IncHI1A	100	420 / 420	ABOKPB010000101.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12326056 SAMN38018666-rid19981603.denovo.104, whole genome shotgun sequence	527..946		enterobacteriales	IncHI1B(R27)	100	540 / 540	ABOKPB010000015.1 Salmonella enterica subsp. enterica serovar Senftenberg strain FSIS12326056 SAMN38018666-rid19981603.denovo.015, whole genome shotgun sequence	68421..68960	R27																			avrA	ABOKPB010000009.1	99734..100603	98.966	870	0						
GCA_033127505.1_PDT001957432.1_genomic.fna	Salmonella_enterica	0.519	45.209 KB	34	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aph(6)-Id	100	837/837	ABOKPE010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326058 SAMN38018668-rid19976573.denovo.047, whole genome shotgun sequence	2754..3590	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOKPE010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326058 SAMN38018668-rid19976573.denovo.047, whole genome shotgun sequence	1952..2754	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOKPE010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326058 SAMN38018668-rid19976573.denovo.047, whole genome shotgun sequence	1951..2754	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOKPE010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326058 SAMN38018668-rid19976573.denovo.047, whole genome shotgun sequence	1951..2754	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOKPE010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326058 SAMN38018668-rid19976573.denovo.047, whole genome shotgun sequence	1951..2754	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABOKPE010000098.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326058 SAMN38018668-rid19976573.denovo.099, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKPE010000261.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326058 SAMN38018668-rid19976573.guided.123, whole genome shotgun sequence	8005..8442	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKPE010000262.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326058 SAMN38018668-rid19976573.guided.126, whole genome shotgun sequence	2795..3631	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOKPE010000262.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326058 SAMN38018668-rid19976573.guided.126, whole genome shotgun sequence	1993..2795	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOKPE010000262.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326058 SAMN38018668-rid19976573.guided.126, whole genome shotgun sequence	1992..2795	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOKPE010000262.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326058 SAMN38018668-rid19976573.guided.126, whole genome shotgun sequence	1992..2795	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOKPE010000262.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326058 SAMN38018668-rid19976573.guided.126, whole genome shotgun sequence	1992..2795	Streptomycin	AF321550																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOKPE010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326058 SAMN38018668-rid19976573.denovo.051, whole genome shotgun sequence	28959..29285	enterobacteriales	IncHI2A	99.52	630 / 630	ABOKPE010000152.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326058 SAMN38018668-rid19976573.denovo.156, whole genome shotgun sequence	1569..2198		enterobacteriales	IncX1	99.73	373 / 373	ABOKPE010000203.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326058 SAMN38018668-rid19976573.denovo.207, whole genome shotgun sequence	1127..1499																																									avrA	ABOKPE010000038.1	39489..40358	99.655	870	0						
GCA_033127525.1_PDT001957433.1_genomic.fna	Salmonella_enterica	0.5236	61.001 KB	26	aroC_11,dnaN_41,hemD_55,hisD_42,purE_34,sucA_58,thrA_4	138	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_34	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKPD010000054.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325676 SAMN38018669-rid19975373.denovo.054, whole genome shotgun sequence	12396..12833	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKPD010000161.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS12325676 SAMN38018669-rid19975373.guided.077, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033127545.1_PDT001957431.1_genomic.fna	Salmonella_enterica	0.5225	58.314 KB	25	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKPF010000014.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326057 SAMN38018667-rid19982473.denovo.014, whole genome shotgun sequence	76097..76534	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKPF010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326057 SAMN38018667-rid19982473.denovo.065, whole genome shotgun sequence	22729..23520	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKPF010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326057 SAMN38018667-rid19982473.denovo.065, whole genome shotgun sequence	22729..23520	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOKPF010000149.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326057 SAMN38018667-rid19982473.guided.074, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKPF010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326057 SAMN38018667-rid19982473.guided.110, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKPF010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326057 SAMN38018667-rid19982473.guided.110, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOKPF010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326057 SAMN38018667-rid19982473.denovo.065, whole genome shotgun sequence	21385..22224	Sulfamethoxazole	U12338	sul1	100	840/840	ABOKPF010000153.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326057 SAMN38018667-rid19982473.guided.110, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOKPF010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326057 SAMN38018667-rid19982473.denovo.065, whole genome shotgun sequence	7669..8868	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOKPF010000152.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326057 SAMN38018667-rid19982473.guided.105, whole genome shotgun sequence	1877..3076	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOKPF010000109.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326057 SAMN38018667-rid19982473.denovo.114, whole genome shotgun sequence	2607..3166																																																						avrA	ABOKPF010000016.1	81691..82560	99.655	870	0						
GCA_033127565.1_PDT001957430.1_genomic.fna	Salmonella_enterica	0.5225	64.102 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKPG010000025.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326055 SAMN38018665-rid19984043.denovo.025, whole genome shotgun sequence	12584..13021	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKPG010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326055 SAMN38018665-rid19984043.denovo.066, whole genome shotgun sequence	22677..23468	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKPG010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326055 SAMN38018665-rid19984043.denovo.066, whole genome shotgun sequence	22677..23468	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOKPG010000147.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326055 SAMN38018665-rid19984043.denovo.154, whole genome shotgun sequence	93..908	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	X62115	aac(6')-Iaa	97.49	438/438	ABOKPG010000154.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326055 SAMN38018665-rid19984043.guided.028, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKPG010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326055 SAMN38018665-rid19984043.guided.099, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKPG010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326055 SAMN38018665-rid19984043.guided.099, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOKPG010000160.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326055 SAMN38018665-rid19984043.guided.151, whole genome shotgun sequence	127..942	Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin, Unknown Aminoglycoside	X62115	sul1	100	840/840	ABOKPG010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326055 SAMN38018665-rid19984043.denovo.066, whole genome shotgun sequence	21333..22172	Sulfamethoxazole	U12338	sul1	100	840/840	ABOKPG010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326055 SAMN38018665-rid19984043.guided.099, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOKPG010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326055 SAMN38018665-rid19984043.denovo.066, whole genome shotgun sequence	7617..8816	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOKPG010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326055 SAMN38018665-rid19984043.guided.116, whole genome shotgun sequence	1895..3094	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOKPG010000112.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326055 SAMN38018665-rid19984043.denovo.117, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOKPG010000159.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326055 SAMN38018665-rid19984043.guided.130, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOKPG010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326055 SAMN38018665-rid19984043.denovo.101, whole genome shotgun sequence	7345..7904																																																						avrA	ABOKPG010000038.1	39526..40395	99.655	870	0						
GCA_033127575.1_PDT001957429.1_genomic.fna	Salmonella_enterica	0.5198	115.428 KB	14	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKPH010000001.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326062 SAMN38018664-rid19982763.denovo.01, whole genome shotgun sequence	163767..164204	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKPH010000059.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326062 SAMN38018664-rid19982763.denovo.61, whole genome shotgun sequence	6716..7552	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKPH010000059.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326062 SAMN38018664-rid19982763.denovo.61, whole genome shotgun sequence	7552..8355	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOKPH010000089.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326062 SAMN38018664-rid19982763.guided.70, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKPH010000089.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326062 SAMN38018664-rid19982763.guided.70, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOKPH010000090.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326062 SAMN38018664-rid19982763.guided.76, whole genome shotgun sequence	1124..1561	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOKPH010000065.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326062 SAMN38018664-rid19982763.denovo.67, whole genome shotgun sequence	1409..2614	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOKPH010000088.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326062 SAMN38018664-rid19982763.guided.68, whole genome shotgun sequence	4199..5404	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOKPH010000070.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326062 SAMN38018664-rid19982763.denovo.74, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOKPH010000059.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326062 SAMN38018664-rid19982763.denovo.61, whole genome shotgun sequence	5832..6093		enterobacteriales	IncFII	96.95	262 / 261	ABOKPH010000089.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326062 SAMN38018664-rid19982763.guided.70, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOKPH010000056.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326062 SAMN38018664-rid19982763.denovo.58, whole genome shotgun sequence	2153..2525																																		avrA	ABOKPH010000013.1	39350..40219	99.655	870	0						
GCA_033127605.1_PDT001957428.1_genomic.fna	Salmonella_enterica	0.5194	122.501 KB	13	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKPI010000001.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326059 SAMN38018661-rid19973883.denovo.01, whole genome shotgun sequence	234780..235217	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKPI010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326059 SAMN38018661-rid19973883.denovo.58, whole genome shotgun sequence	6218..7054	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKPI010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326059 SAMN38018661-rid19973883.denovo.58, whole genome shotgun sequence	7054..7857	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOKPI010000087.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326059 SAMN38018661-rid19973883.guided.51, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKPI010000088.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326059 SAMN38018661-rid19973883.guided.65, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKPI010000088.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326059 SAMN38018661-rid19973883.guided.65, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOKPI010000063.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326059 SAMN38018661-rid19973883.denovo.67, whole genome shotgun sequence	2379..3584	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOKPI010000089.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326059 SAMN38018661-rid19973883.guided.68, whole genome shotgun sequence	2397..3602	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOKPI010000062.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326059 SAMN38018661-rid19973883.denovo.66, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOKPI010000055.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326059 SAMN38018661-rid19973883.denovo.58, whole genome shotgun sequence	5334..5595		enterobacteriales	IncFII	96.95	262 / 261	ABOKPI010000088.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326059 SAMN38018661-rid19973883.guided.65, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOKPI010000053.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326059 SAMN38018661-rid19973883.denovo.56, whole genome shotgun sequence	2153..2525																																		avrA	ABOKPI010000003.1	39484..40353	99.655	870	0						
GCA_033127645.1_PDT001957427.1_genomic.fna	Salmonella_enterica	0.5193	131.931 KB	11	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKPJ010000001.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326060 SAMN38018662-rid19980053.denovo.01, whole genome shotgun sequence	425413..425850	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKPJ010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326060 SAMN38018662-rid19980053.denovo.54, whole genome shotgun sequence	6683..7519	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKPJ010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326060 SAMN38018662-rid19980053.denovo.54, whole genome shotgun sequence	7519..8322	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOKPJ010000080.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326060 SAMN38018662-rid19980053.guided.37, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKPJ010000082.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326060 SAMN38018662-rid19980053.guided.56, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKPJ010000082.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326060 SAMN38018662-rid19980053.guided.56, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOKPJ010000057.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326060 SAMN38018662-rid19980053.denovo.61, whole genome shotgun sequence	2381..3586	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOKPJ010000083.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326060 SAMN38018662-rid19980053.guided.62, whole genome shotgun sequence	2220..3425	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOKPJ010000059.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326060 SAMN38018662-rid19980053.denovo.64, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOKPJ010000051.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326060 SAMN38018662-rid19980053.denovo.54, whole genome shotgun sequence	5799..6060		enterobacteriales	IncFII	96.95	262 / 261	ABOKPJ010000082.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326060 SAMN38018662-rid19980053.guided.56, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOKPJ010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326060 SAMN38018662-rid19980053.denovo.53, whole genome shotgun sequence	2153..2525																																		avrA	ABOKPJ010000014.1	39460..40329	99.655	870	0						
GCA_033127665.1_PDT001957424.1_genomic.fna	Salmonella_enterica	0.5226	44.897 KB	28	aroC_83,dnaN_11,hemD_16,hisD_13,purE_77,sucA_71,thrA_4	225	8:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_83	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_77	sucA	100	100	sucA_71	thrA	100	100	thrA_4	8	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Gatuni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKPL010000015.1 Salmonella enterica subsp. enterica serovar Gatuni strain FSIS12325646 SAMN38018610-rid19981583.denovo.015, whole genome shotgun sequence	11319..11756	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKPL010000204.1 Salmonella enterica subsp. enterica serovar Gatuni strain FSIS12325646 SAMN38018610-rid19981583.guided.123, whole genome shotgun sequence	7577..8014	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.82	643 / 643	ABOKPL010000094.1 Salmonella enterica subsp. enterica serovar Gatuni strain FSIS12325646 SAMN38018610-rid19981583.denovo.096, whole genome shotgun sequence	6266..6908																																																						avrA	ABOKPL010000007.1	43539..44408	99.655	870	0						
GCA_033127685.1_PDT001957426.1_genomic.fna	Salmonella_enterica	0.5211	117.155 KB	13	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	4	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		3	Col440I,ColpVC,IncC	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKPK010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326061 SAMN38018663-rid19981593.denovo.01, whole genome shotgun sequence	145228..145665	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKPK010000082.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326061 SAMN38018663-rid19981593.guided.49, whole genome shotgun sequence	24305..24742	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKPK010000083.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326061 SAMN38018663-rid19981593.guided.50, whole genome shotgun sequence	24305..24742	Amikacin, Tobramycin	NC_003197	blaCMY-2	100	1146/1146	ABOKPK010000061.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326061 SAMN38018663-rid19981593.denovo.66, whole genome shotgun sequence	2102..3247	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOKPK010000087.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326061 SAMN38018663-rid19981593.guided.67, whole genome shotgun sequence	2123..3268	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOKPK010000053.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326061 SAMN38018663-rid19981593.denovo.57, whole genome shotgun sequence	10341..11156	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOKPK010000085.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326061 SAMN38018663-rid19981593.guided.56, whole genome shotgun sequence	10382..11197	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOKPK010000053.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326061 SAMN38018663-rid19981593.denovo.57, whole genome shotgun sequence	13333..14532	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOKPK010000085.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326061 SAMN38018663-rid19981593.guided.56, whole genome shotgun sequence	13374..14573	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																													enterobacteriales	Col440I	93.81	113 / 114	ABOKPK010000069.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326061 SAMN38018663-rid19981593.denovo.75, whole genome shotgun sequence	2528..2639	enterobacteriales	ColpVC	98.96	193 / 193	ABOKPK010000073.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326061 SAMN38018663-rid19981593.denovo.79, whole genome shotgun sequence	805..997		enterobacteriales	IncC	100	417 / 417	ABOKPK010000037.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326061 SAMN38018663-rid19981593.denovo.37, whole genome shotgun sequence	38348..38764																																									avrA	ABOKPK010000006.1	108442..109311	99.885	870	0						
GCA_033128765.1_PDT001957377.1_genomic.fna	Salmonella_enterica	0.5211	224.134 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKQY010000001.1 Salmonella enterica strain PNUSAS396202 SAMN38018601-rid19980013.denovo.01, whole genome shotgun sequence	482671..483108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKQY010000048.1 Salmonella enterica strain PNUSAS396202 SAMN38018601-rid19980013.guided.33, whole genome shotgun sequence	2542..2979	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOKQY010000019.1 Salmonella enterica strain PNUSAS396202 SAMN38018601-rid19980013.denovo.19, whole genome shotgun sequence	68495..69137	enterobacteriales	IncFII(S)	100	262 / 262	ABOKQY010000019.1 Salmonella enterica strain PNUSAS396202 SAMN38018601-rid19980013.denovo.19, whole genome shotgun sequence	84222..84483																																																avrA	ABOKQY010000007.1	39748..40617	99.885	870	0						
GCA_033128785.1_PDT001957380.1_genomic.fna	Salmonella_enterica	0.5214	479.166 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKQX010000001.1 Salmonella enterica strain PNUSAS396201 SAMN38018600-rid19985323.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKQX010000027.1 Salmonella enterica strain PNUSAS396201 SAMN38018600-rid19985323.guided.18, whole genome shotgun sequence	19007..19444	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKQX010000015.1 Salmonella enterica strain PNUSAS396201 SAMN38018600-rid19985323.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOKQX010000015.1 Salmonella enterica strain PNUSAS396201 SAMN38018600-rid19985323.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOKQX010000002.1	553181..554050	99.54	870	0						
GCA_033128805.1_PDT001957376.1_genomic.fna	Salmonella_enterica	0.522	343.861 KB	5	aroC_75,dnaN_67,hemD_10,hisD_17,purE_15,sucA_9,thrA_66	197	7:r:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_75	dnaN	100	100	dnaN_67	hemD	100	100	hemD_10	hisD	100	100	hisD_17	purE	100	100	purE_15	sucA	100	100	sucA_9	thrA	100	100	thrA_66	7	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Virchow		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOKQZ010000001.1 Salmonella enterica strain PNUSAS396200 SAMN38018599-rid19975313.denovo.01, whole genome shotgun sequence	567474..567911	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOKQZ010000043.1 Salmonella enterica strain PNUSAS396200 SAMN38018599-rid19975313.guided.23, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKQZ010000002.1	527163..528032	99.77	870	0						
GCA_033129375.1_PDT001957481.1_genomic.fna	Salmonella_enterica	0.5205	400.804 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKRB010000001.1 Salmonella enterica strain PNUSAS395961 SAMN38019422-rid19981673.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKRB010000032.1 Salmonella enterica strain PNUSAS395961 SAMN38019422-rid19981673.guided.21, whole genome shotgun sequence	6822..7259	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKRB010000014.1 Salmonella enterica strain PNUSAS395961 SAMN38019422-rid19981673.denovo.14, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOKRB010000014.1 Salmonella enterica strain PNUSAS395961 SAMN38019422-rid19981673.denovo.14, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABOKRB010000017.1 Salmonella enterica strain PNUSAS395961 SAMN38019422-rid19981673.denovo.18, whole genome shotgun sequence	32011..32384																																									avrA	ABOKRB010000008.1	174749..175618	99.54	870	0						
GCA_033129385.1_PDT001957480.1_genomic.fna	Salmonella_enterica	0.521	483.849 KB	4	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOKRC010000001.1 Salmonella enterica strain PNUSAS395984 SAMN38019423-rid19987293.denovo.01, whole genome shotgun sequence	267094..267531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOKRC010000024.1 Salmonella enterica strain PNUSAS395984 SAMN38019423-rid19987293.guided.20, whole genome shotgun sequence	2005..2442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKRC010000002.1	160331..161200	99.54	870	0						
GCA_033129465.1_PDT001957829.1_genomic.fna	Salmonella_enterica	0.5202	245.639 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	2	IncFIB(pN55391),IncX4	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKRA010000001.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKRA010000026.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.denovo.28, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKRA010000026.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.denovo.28, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOKRA010000045.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.denovo.53, whole genome shotgun sequence	92..907	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin	X62115	aac(6')-Iaa	97.49	438/438	ABOKRA010000050.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.guided.20, whole genome shotgun sequence	5661..6098	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOKRA010000052.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.guided.29, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOKRA010000052.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.guided.29, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOKRA010000057.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.guided.52, whole genome shotgun sequence	128..943	Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Kanamycin, Neomycin	X62115	blaCTX-M-65	100	876/876	ABOKRA010000040.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.denovo.46, whole genome shotgun sequence	954..1829	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOKRA010000055.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.guided.45, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABOKRA010000042.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.denovo.49, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABOKRA010000056.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.guided.48, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	floR	98.19	1214/1215	ABOKRA010000035.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.denovo.39, whole genome shotgun sequence	3786..4999	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOKRA010000054.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.guided.41, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOKRA010000026.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.denovo.28, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABOKRA010000052.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.guided.29, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOKRA010000026.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.denovo.28, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOKRA010000052.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.guided.29, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOKRA010000029.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.denovo.32, whole genome shotgun sequence	8975..9534	enterobacteriales	IncX4	98.88	712 / 712	ABOKRA010000025.1 Salmonella enterica strain PNUSAS396336 SAMN38019582-rid19989643.denovo.26, whole genome shotgun sequence	2444..3155																																																avrA	ABOKRA010000003.1	39430..40299	99.655	870	0						
GCA_033129605.1_PDT001961233.1_genomic.fna	Salmonella_enterica	0.5219	170.01 KB	10	aroC_124,dnaN_4,hemD_283,hisD_943,purE_5,sucA_12,thrA_38	4075	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_124	dnaN	100	100	dnaN_4	hemD	100	100	hemD_283	hisD	100	100	hisD_943	purE	100	100	purE_5	sucA	100	100	sucA_12	thrA	100	100	thrA_38	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKRF010000016.1 Salmonella enterica strain PNUSAS396375 SAMN38034814-rid20008953.denovo.16, whole genome shotgun sequence	42618..43055	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKRF010000049.1 Salmonella enterica strain PNUSAS396375 SAMN38034814-rid20008953.guided.36, whole genome shotgun sequence	2434..2871	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKRF010000007.1	145002..145870	99.08	870	0						
GCA_033129625.1_PDT001961230.1_genomic.fna	Salmonella_enterica	0.5214	321.639 KB	6	aroC_13,dnaN_127,hemD_506,hisD_113,purE_114,sucA_107,thrA_4	3095	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_506	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKRG010000001.1 Salmonella enterica strain PNUSAS396373 SAMN38034805-rid20009053.denovo.01, whole genome shotgun sequence	498131..498568	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKRG010000037.1 Salmonella enterica strain PNUSAS396373 SAMN38034805-rid20009053.guided.28, whole genome shotgun sequence	3911..4348	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKRG010000009.1	140447..141316	99.425	870	0						
GCA_033130775.1_PDT001961238.1_genomic.fna	Salmonella_enterica	0.5207	182.666 KB	9	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKRJ010000013.1 Salmonella enterica strain PNUSAS396370 SAMN38034818-rid20009123.denovo.13, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKRJ010000056.1 Salmonella enterica strain PNUSAS396370 SAMN38034818-rid20009123.guided.42, whole genome shotgun sequence	3414..3851	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOKRJ010000025.1 Salmonella enterica strain PNUSAS396370 SAMN38034818-rid20009123.denovo.25, whole genome shotgun sequence	34957..35490																																																						avrA	ABOKRJ010000001.1	123895..124761	98.851	870	0						
GCA_033130795.1_PDT001961229.1_genomic.fna	Salmonella_enterica	0.5214	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	7	aac(6')-Iaa,aadA2,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aadA2,aph(6)-Id,aph(6)-Id,qnrB19,qnrB19,sul2,sul2,tet(B),tet(B),dfrA12,dfrA12,dfrA12,dfrA12,dfrA12,dfrA12	0		4	Col(pHAD28),Col156,IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKRM010000001.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.denovo.01, whole genome shotgun sequence	458967..459404	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOKRM010000054.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.denovo.60, whole genome shotgun sequence	242..1033	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	772/837	ABOKRM010000057.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.denovo.65, whole genome shotgun sequence	1..772	Streptomycin	AF024602	aph(6)-Id	100	772/837	ABOKRM010000057.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.denovo.65, whole genome shotgun sequence	1..772	Streptomycin	M28829	aac(6')-Iaa	100	438/438	ABOKRM010000072.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.guided.48, whole genome shotgun sequence	1753..2190	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOKRM010000074.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.guided.57, whole genome shotgun sequence	874..1665	Spectinomycin, Streptomycin	JQ364967	aph(6)-Id	100	773/837	ABOKRM010000077.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.guided.64, whole genome shotgun sequence	670..1442	Streptomycin	AF024602	aph(6)-Id	100	773/837	ABOKRM010000077.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.guided.64, whole genome shotgun sequence	670..1442	Streptomycin	M28829	qnrB19	100	645/645	ABOKRM010000049.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.denovo.53, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOKRM010000076.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.guided.61, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABOKRM010000048.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.denovo.52, whole genome shotgun sequence	76..891	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOKRM010000073.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.guided.51, whole genome shotgun sequence	1900..2715	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOKRM010000041.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.denovo.42, whole genome shotgun sequence	68..1273	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOKRM010000070.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.guided.41, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777	dfrA12	100	425/498	ABOKRM010000054.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.denovo.60, whole genome shotgun sequence	1441..1865	Trimethoprim	AM040708	dfrA12	100	425/498	ABOKRM010000054.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.denovo.60, whole genome shotgun sequence	1441..1865	Trimethoprim	FR875302	dfrA12	100	425/498	ABOKRM010000054.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.denovo.60, whole genome shotgun sequence	1441..1865	Trimethoprim	EU650399	dfrA12	100	429/498	ABOKRM010000074.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.guided.57, whole genome shotgun sequence	38..466	Trimethoprim	AM040708	dfrA12	100	429/498	ABOKRM010000074.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.guided.57, whole genome shotgun sequence	38..466	Trimethoprim	FR875302	dfrA12	100	429/498	ABOKRM010000074.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.guided.57, whole genome shotgun sequence	38..466	Trimethoprim	EU650399																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOKRM010000049.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.denovo.53, whole genome shotgun sequence	1150..1280	enterobacteriales	Col156	94.81	154 / 154	ABOKRM010000046.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.denovo.49, whole genome shotgun sequence	791..944		enterobacteriales	IncFIB(S)	100	643 / 643	ABOKRM010000025.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.denovo.25, whole genome shotgun sequence	19588..20230		enterobacteriales	IncFII(S)	100	262 / 262	ABOKRM010000025.1 Salmonella enterica strain PNUSAS396367 SAMN38034815-rid20009043.denovo.25, whole genome shotgun sequence	35315..35576																																		avrA	ABOKRM010000008.1	143228..144097	99.885	870	0						
GCA_033130815.1_PDT001961228.1_genomic.fna	Salmonella_enterica	0.5202	439.498 KB	4	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKRL010000001.1 Salmonella enterica strain PNUSAS396374 SAMN38034806-rid20009033.denovo.01, whole genome shotgun sequence	647586..648023	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKRL010000030.1 Salmonella enterica strain PNUSAS396374 SAMN38034806-rid20009033.guided.22, whole genome shotgun sequence	5628..6065	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOKRL010000021.1 Salmonella enterica strain PNUSAS396374 SAMN38034806-rid20009033.denovo.24, whole genome shotgun sequence	1905..2035																																																						avrA	ABOKRL010000002.1	162699..163568	98.966	870	0						
GCA_033130835.1_PDT001961227.1_genomic.fna	Salmonella_enterica	0.5229	263.615 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKRN010000001.1 Salmonella enterica strain PNUSAS396380 SAMN38034811-rid20009023.denovo.01, whole genome shotgun sequence	573965..574402	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKRN010000037.1 Salmonella enterica strain PNUSAS396380 SAMN38034811-rid20009023.guided.27, whole genome shotgun sequence	8102..8539	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKRN010000004.1	151256..152125	99.655	870	0						
GCA_033131835.1_PDT001961236.1_genomic.fna	Salmonella_enterica	0.5203	478.383 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKRU010000001.1 Salmonella enterica strain PNUSAS396371 SAMN38034816-rid20009103.denovo.01, whole genome shotgun sequence	774424..774861	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKRU010000025.1 Salmonella enterica strain PNUSAS396371 SAMN38034816-rid20009103.guided.12, whole genome shotgun sequence	17117..17554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKRU010000016.1 Salmonella enterica strain PNUSAS396371 SAMN38034816-rid20009103.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOKRU010000018.1 Salmonella enterica strain PNUSAS396371 SAMN38034816-rid20009103.denovo.21, whole genome shotgun sequence	3395..3656		enterobacteriales	IncX1	98.93	374 / 374	ABOKRU010000012.1 Salmonella enterica strain PNUSAS396371 SAMN38034816-rid20009103.denovo.13, whole genome shotgun sequence	32011..32384																																									avrA	ABOKRU010000002.1	553553..554422	99.54	870	0						
GCA_033131855.1_PDT001961240.1_genomic.fna	Salmonella_enterica	0.5218	401.357 KB	4	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKRW010000001.1 Salmonella enterica strain PNUSAS396378 SAMN38034822-rid20009143.denovo.01, whole genome shotgun sequence	674207..674644	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKRW010000034.1 Salmonella enterica strain PNUSAS396378 SAMN38034822-rid20009143.guided.24, whole genome shotgun sequence	3335..3772	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKRW010000002.1	514772..515640	99.655	870	0						
GCA_033131875.1_PDT001961235.1_genomic.fna	Salmonella_enterica	0.5211	278.344 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKRX010000001.1 Salmonella enterica strain PNUSAS396369 SAMN38034809-rid20009093.denovo.01, whole genome shotgun sequence	482679..483116	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKRX010000050.1 Salmonella enterica strain PNUSAS396369 SAMN38034809-rid20009093.guided.34, whole genome shotgun sequence	2894..3331	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOKRX010000021.1 Salmonella enterica strain PNUSAS396369 SAMN38034809-rid20009093.denovo.21, whole genome shotgun sequence	59649..60854	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOKRX010000048.1 Salmonella enterica strain PNUSAS396369 SAMN38034809-rid20009093.guided.31, whole genome shotgun sequence	4116..5321	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABOKRX010000002.1	508649..509518	99.885	870	0						
GCA_033131895.1_PDT001961234.1_genomic.fna	Salmonella_enterica	0.5206	402.8 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_547	2370	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_547	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKRY010000001.1 Salmonella enterica strain PNUSAS396372 SAMN38034823-rid20009083.denovo.01, whole genome shotgun sequence	786719..787156	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKRY010000027.1 Salmonella enterica strain PNUSAS396372 SAMN38034823-rid20009083.guided.21, whole genome shotgun sequence	2326..2763	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKRY010000010.1	160857..161726	99.08	870	0						
GCA_033132955.1_PDT001961241.1_genomic.fna	Salmonella_enterica	0.5216	389.35 KB	4	aroC_13,dnaN_127,hemD_506,hisD_113,purE_114,sucA_107,thrA_4	3095	13:z:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_127	hemD	100	100	hemD_506	hisD	100	100	hisD_113	purE	100	100	purE_114	sucA	100	100	sucA_107	thrA	100	100	thrA_4	13	z	1,6	Salmonella enterica subspecies enterica (subspecies I)	Poona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKSO010000001.1 Salmonella enterica strain PNUSAS396365 SAMN38034817-rid20009153.denovo.01, whole genome shotgun sequence	502784..503221	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKSO010000033.1 Salmonella enterica strain PNUSAS396365 SAMN38034817-rid20009153.guided.22, whole genome shotgun sequence	3885..4322	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKSO010000009.1	94271..95140	99.425	870	0						
GCA_033132975.1_PDT001961237.1_genomic.fna	Salmonella_enterica	0.5212	402.519 KB	4	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKSP010000001.1 Salmonella enterica strain PNUSAS396379 SAMN38034821-rid20009113.denovo.01, whole genome shotgun sequence	482423..482860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKSP010000024.1 Salmonella enterica strain PNUSAS396379 SAMN38034821-rid20009113.guided.15, whole genome shotgun sequence	4074..4511	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033132995.1_PDT001961226.1_genomic.fna	Salmonella_enterica	0.5213	304.515 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKSN010000001.1 Salmonella enterica strain PNUSAS396366 SAMN38034808-rid20009013.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKSN010000034.1 Salmonella enterica strain PNUSAS396366 SAMN38034808-rid20009013.guided.24, whole genome shotgun sequence	9680..10117	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKSN010000021.1 Salmonella enterica strain PNUSAS396366 SAMN38034808-rid20009013.denovo.23, whole genome shotgun sequence	6825..7467	enterobacteriales	IncFII(S)	100	262 / 262	ABOKSN010000022.1 Salmonella enterica strain PNUSAS396366 SAMN38034808-rid20009013.denovo.25, whole genome shotgun sequence	3446..3707																																																avrA	ABOKSN010000002.1	585353..586222	99.54	870	0						
GCA_033133035.1_PDT001961225.1_genomic.fna	Salmonella_enterica	0.5218	191.425 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKSQ010000001.1 Salmonella enterica strain PNUSAS396368 SAMN38034810-rid20009003.denovo.01, whole genome shotgun sequence	233303..233740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKSQ010000049.1 Salmonella enterica strain PNUSAS396368 SAMN38034810-rid20009003.guided.37, whole genome shotgun sequence	1842..2279	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKSQ010000002.1	208058..208926	99.77	870	0						
GCA_033133735.1_PDT001961249.1_genomic.fna	Salmonella_enterica	0.5207	385 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_1284*	Unknown	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	99.8003992015968	100	thrA_1284*	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKSU010000008.1 Salmonella enterica strain PNUSAS396069 SAMN38035052-rid20009223.denovo.08, whole genome shotgun sequence	148962..149399	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKSU010000026.1 Salmonella enterica strain PNUSAS396069 SAMN38035052-rid20009223.guided.19, whole genome shotgun sequence	16415..16852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033135665.1_PDT001961454.1_genomic.fna	Salmonella_enterica	0.5213	307.243 KB	6	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKSX010000001.1 Salmonella enterica strain PNUSAS396407 SAMN38035983-rid20010203.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKSX010000035.1 Salmonella enterica strain PNUSAS396407 SAMN38035983-rid20010203.guided.15, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKSX010000005.1	94201..95070	99.31	870	0						
GCA_033135685.1_PDT001961453.1_genomic.fna	Salmonella_enterica	0.5222	375.565 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKSY010000001.1 Salmonella enterica strain PNUSAS396437 SAMN38035991-rid20010193.denovo.01, whole genome shotgun sequence	622355..622792	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKSY010000031.1 Salmonella enterica strain PNUSAS396437 SAMN38035991-rid20010193.guided.16, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKSY010000002.1	149551..150420	99.655	870	0						
GCA_033135705.1_PDT001961451.1_genomic.fna	Salmonella_enterica	0.5216	619.866 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKSZ010000001.1 Salmonella enterica strain PNUSAS396414 SAMN38035990-rid20010173.denovo.01, whole genome shotgun sequence	566161..566598	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKSZ010000031.1 Salmonella enterica strain PNUSAS396414 SAMN38035990-rid20010173.guided.16, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKSZ010000004.1	401405..402274	99.655	870	0						
GCA_033135725.1_PDT001961446.1_genomic.fna	Salmonella_enterica	0.5218	263.606 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKTB010000001.1 Salmonella enterica strain PNUSAS396425 SAMN38035971-rid20010123.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKTB010000031.1 Salmonella enterica strain PNUSAS396425 SAMN38035971-rid20010123.guided.14, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKTB010000002.1	149551..150420	99.655	870	0						
GCA_033135745.1_PDT001961445.1_genomic.fna	Salmonella_enterica	0.5229	415.778 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKTC010000001.1 Salmonella enterica strain PNUSAS396416 SAMN38035977-rid20010113.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKTC010000026.1 Salmonella enterica strain PNUSAS396416 SAMN38035977-rid20010113.guided.16, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKTC010000004.1	39430..40299	99.655	870	0						
GCA_033135765.1_PDT001961449.1_genomic.fna	Salmonella_enterica	0.5205	660.524 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKTA010000001.1 Salmonella enterica strain PNUSAS396433 SAMN38035972-rid20010153.denovo.01, whole genome shotgun sequence	398384..398821	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKTA010000022.1 Salmonella enterica strain PNUSAS396433 SAMN38035972-rid20010153.guided.09, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKTA010000003.1	496410..497278	99.425	870	0						
GCA_033135785.1_PDT001961444.1_genomic.fna	Salmonella_enterica	0.5217	494.126 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKTD010000003.1 Salmonella enterica strain PNUSAS396436 SAMN38035978-rid20010103.denovo.03, whole genome shotgun sequence	145592..146029	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKTD010000031.1 Salmonella enterica strain PNUSAS396436 SAMN38035978-rid20010103.guided.13, whole genome shotgun sequence	42426..42863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKTD010000005.1	401381..402250	99.655	870	0						
GCA_033135805.1_PDT001961443.1_genomic.fna	Salmonella_enterica	0.5221	456.53 KB	4	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	40:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col(pHAD28),Col440I	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	40	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Johannesburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOKTE010000001.1 Salmonella enterica strain PNUSAS396413 SAMN38035987-rid20010093.denovo.01, whole genome shotgun sequence	452723..453160	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOKTE010000048.1 Salmonella enterica strain PNUSAS396413 SAMN38035987-rid20010093.guided.17, whole genome shotgun sequence	14363..14800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOKTE010000025.1 Salmonella enterica strain PNUSAS396413 SAMN38035987-rid20010093.denovo.28, whole genome shotgun sequence	1506..1636	enterobacteriales	Col(pHAD28)	93.89	131 / 131	ABOKTE010000031.1 Salmonella enterica strain PNUSAS396413 SAMN38035987-rid20010093.denovo.34, whole genome shotgun sequence	1709..1839		enterobacteriales	Col440I	90.27	113 / 114	ABOKTE010000024.1 Salmonella enterica strain PNUSAS396413 SAMN38035987-rid20010093.denovo.27, whole genome shotgun sequence	3345..3457																																									avrA	ABOKTE010000004.1	95554..96423	99.425	870	0						
GCA_033135825.1_PDT001961442.1_genomic.fna	Salmonella_enterica	0.5216	758.53 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKTF010000001.1 Salmonella enterica strain PNUSAS396406 SAMN38035980-rid20010083.denovo.01, whole genome shotgun sequence	676474..676911	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKTF010000026.1 Salmonella enterica strain PNUSAS396406 SAMN38035980-rid20010083.guided.12, whole genome shotgun sequence	42415..42852	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKTF010000004.1	94981..95850	99.655	870	0						
GCA_033135845.1_PDT001961440.1_genomic.fna	Salmonella_enterica	0.5201	406.016 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKTH010000001.1 Salmonella enterica strain PNUSAS396411 SAMN38035975-rid20010063.denovo.01, whole genome shotgun sequence	293149..293586	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKTH010000030.1 Salmonella enterica strain PNUSAS396411 SAMN38035975-rid20010063.guided.16, whole genome shotgun sequence	38009..38446	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKTH010000016.1 Salmonella enterica strain PNUSAS396411 SAMN38035975-rid20010063.denovo.17, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOKTH010000016.1 Salmonella enterica strain PNUSAS396411 SAMN38035975-rid20010063.denovo.17, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABOKTH010000018.1 Salmonella enterica strain PNUSAS396411 SAMN38035975-rid20010063.denovo.20, whole genome shotgun sequence	32011..32384																																									avrA	ABOKTH010000007.1	174749..175618	99.54	870	0						
GCA_033135865.1_PDT001961441.1_genomic.fna	Salmonella_enterica	0.5207	452.332 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKTG010000003.1 Salmonella enterica strain PNUSAS396420 SAMN38035988-rid20010073.denovo.03, whole genome shotgun sequence	257277..257714	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKTG010000022.1 Salmonella enterica strain PNUSAS396420 SAMN38035988-rid20010073.guided.11, whole genome shotgun sequence	37731..38168	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABOKTG010000013.1 Salmonella enterica strain PNUSAS396420 SAMN38035988-rid20010073.denovo.14, whole genome shotgun sequence	51927..52188																																																						avrA	ABOKTG010000002.1	499536..500404	99.425	870	0						
GCA_033135885.1_PDT001961438.1_genomic.fna	Salmonella_enterica	0.5197	383.888 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKTI010000011.1 Salmonella enterica strain PNUSAS396422 SAMN38035950-rid20010043.denovo.11, whole genome shotgun sequence	120980..121417	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKTI010000026.1 Salmonella enterica strain PNUSAS396422 SAMN38035950-rid20010043.guided.15, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKTI010000001.1	556173..557041	99.425	870	0						
GCA_033135905.1_PDT001961439.1_genomic.fna	Salmonella_enterica	0.521	238.812 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul2,tet(B),tet(B)	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKTK010000002.1 Salmonella enterica strain PNUSAS396405 SAMN38035955-rid20010053.denovo.02, whole genome shotgun sequence	194735..195172	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKTK010000043.1 Salmonella enterica strain PNUSAS396405 SAMN38035955-rid20010053.denovo.48, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKTK010000043.1 Salmonella enterica strain PNUSAS396405 SAMN38035955-rid20010053.denovo.48, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOKTK010000061.1 Salmonella enterica strain PNUSAS396405 SAMN38035955-rid20010053.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKTK010000065.1 Salmonella enterica strain PNUSAS396405 SAMN38035955-rid20010053.guided.47, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKTK010000065.1 Salmonella enterica strain PNUSAS396405 SAMN38035955-rid20010053.guided.47, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOKTK010000048.1 Salmonella enterica strain PNUSAS396405 SAMN38035955-rid20010053.denovo.55, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOKTK010000067.1 Salmonella enterica strain PNUSAS396405 SAMN38035955-rid20010053.guided.54, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABOKTK010000046.1 Salmonella enterica strain PNUSAS396405 SAMN38035955-rid20010053.denovo.52, whole genome shotgun sequence	1806..2450	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOKTK010000066.1 Salmonella enterica strain PNUSAS396405 SAMN38035955-rid20010053.guided.51, whole genome shotgun sequence	1..645	Ciprofloxacin	EU432277	sul2	100	816/816	ABOKTK010000043.1 Salmonella enterica strain PNUSAS396405 SAMN38035955-rid20010053.denovo.48, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOKTK010000065.1 Salmonella enterica strain PNUSAS396405 SAMN38035955-rid20010053.guided.47, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOKTK010000038.1 Salmonella enterica strain PNUSAS396405 SAMN38035955-rid20010053.denovo.42, whole genome shotgun sequence	423..1628	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOKTK010000064.1 Salmonella enterica strain PNUSAS396405 SAMN38035955-rid20010053.guided.41, whole genome shotgun sequence	4116..5321	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	100	131 / 131	ABOKTK010000046.1 Salmonella enterica strain PNUSAS396405 SAMN38035955-rid20010053.denovo.52, whole genome shotgun sequence	1150..1280	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOKTK010000066.1 Salmonella enterica strain PNUSAS396405 SAMN38035955-rid20010053.guided.51, whole genome shotgun sequence	2044..2174																																																avrA	ABOKTK010000001.1	540631..541500	99.885	870	0						
GCA_033135925.1_PDT001961436.1_genomic.fna	Salmonella_enterica	0.5193	728.781 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKTJ010000001.1 Salmonella enterica strain PNUSAS396427 SAMN38035957-rid20010023.denovo.01, whole genome shotgun sequence	395460..395897	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKTJ010000019.1 Salmonella enterica strain PNUSAS396427 SAMN38035957-rid20010023.guided.09, whole genome shotgun sequence	35023..35460	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKTJ010000004.1	560986..561856	99.656	871	0						
GCA_033135945.1_PDT001961433.1_genomic.fna	Salmonella_enterica	0.5216	702.361 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKTL010000001.1 Salmonella enterica strain PNUSAS396404 SAMN38035956-rid20009993.denovo.01, whole genome shotgun sequence	594841..595278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKTL010000017.1 Salmonella enterica strain PNUSAS396404 SAMN38035956-rid20009993.guided.12, whole genome shotgun sequence	8749..9186	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKTL010000002.1	606464..607332	99.655	870	0						
GCA_033135965.1_PDT001961430.1_genomic.fna	Salmonella_enterica	0.521	534.535 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKTN010000001.1 Salmonella enterica strain PNUSAS396412 SAMN38035960-rid20009963.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKTN010000026.1 Salmonella enterica strain PNUSAS396412 SAMN38035960-rid20009963.guided.15, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.76	643 / 643	ABOKTN010000015.1 Salmonella enterica strain PNUSAS396412 SAMN38035960-rid20009963.denovo.16, whole genome shotgun sequence	36764..37406	enterobacteriales	IncFII(S)	100	262 / 262	ABOKTN010000015.1 Salmonella enterica strain PNUSAS396412 SAMN38035960-rid20009963.denovo.16, whole genome shotgun sequence	51883..52144																																																avrA	ABOKTN010000002.1	553187..554056	99.54	870	0						
GCA_033135985.1_PDT001961426.1_genomic.fna	Salmonella_enterica	0.5211	400.035 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKTO010000003.1 Salmonella enterica strain PNUSAS396423 SAMN38035954-rid20009923.denovo.03, whole genome shotgun sequence	149623..150060	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKTO010000028.1 Salmonella enterica strain PNUSAS396423 SAMN38035954-rid20009923.guided.21, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033136005.1_PDT001961431.1_genomic.fna	Salmonella_enterica	0.5208	283.969 KB	6	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKTM010000003.1 Salmonella enterica strain PNUSAS396418 SAMN38035959-rid20009973.denovo.03, whole genome shotgun sequence	162378..162815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKTM010000028.1 Salmonella enterica strain PNUSAS396418 SAMN38035959-rid20009973.guided.17, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKTM010000018.1 Salmonella enterica strain PNUSAS396418 SAMN38035959-rid20009973.denovo.20, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOKTM010000018.1 Salmonella enterica strain PNUSAS396418 SAMN38035959-rid20009973.denovo.20, whole genome shotgun sequence	5032..5293																																																avrA	ABOKTM010000001.1	584926..585795	99.54	870	0						
GCA_033136025.1_PDT001961424.1_genomic.fna	Salmonella_enterica	0.5221	273.33 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKTQ010000002.1 Salmonella enterica strain PNUSAS396386 SAMN38035617-rid20009903.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKTQ010000048.1 Salmonella enterica strain PNUSAS396386 SAMN38035617-rid20009903.guided.32, whole genome shotgun sequence	8405..8842	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOKTQ010000024.1 Salmonella enterica strain PNUSAS396386 SAMN38035617-rid20009903.denovo.24, whole genome shotgun sequence	44729..45371	enterobacteriales	IncFII(S)	100	262 / 262	ABOKTQ010000024.1 Salmonella enterica strain PNUSAS396386 SAMN38035617-rid20009903.denovo.24, whole genome shotgun sequence	29383..29644																																																avrA	ABOKTQ010000005.1	155205..156073	100	869	0						
GCA_033136045.1_PDT001961423.1_genomic.fna	Salmonella_enterica	0.5212	396.912 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKTR010000011.1 Salmonella enterica strain PNUSAS396392 SAMN38035615-rid20009893.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKTR010000039.1 Salmonella enterica strain PNUSAS396392 SAMN38035615-rid20009893.guided.31, whole genome shotgun sequence	852..1289	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOKTR010000017.1 Salmonella enterica strain PNUSAS396392 SAMN38035615-rid20009893.denovo.17, whole genome shotgun sequence	34957..35490																																																						avrA	ABOKTR010000001.1	187683..188549	98.966	870	0						
GCA_033136085.1_PDT001961419.1_genomic.fna	Salmonella_enterica	0.5217	385.943 KB	4	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOKTP010000001.1 Salmonella enterica strain PNUSAS396387 SAMN38035614-rid20009853.denovo.01, whole genome shotgun sequence	415065..415502	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOKTP010000033.1 Salmonella enterica strain PNUSAS396387 SAMN38035614-rid20009853.guided.21, whole genome shotgun sequence	14888..15325	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKTP010000002.1	144965..145834	99.31	870	0						
GCA_033136105.1_PDT001961391.1_genomic.fna	Salmonella_enterica	0.5213	406.92 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKTV010000001.1 Salmonella enterica strain PNUSAS396390 SAMN38035611-rid20009573.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKTV010000031.1 Salmonella enterica strain PNUSAS396390 SAMN38035611-rid20009573.guided.25, whole genome shotgun sequence	4651..5088	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKTV010000022.1 Salmonella enterica strain PNUSAS396390 SAMN38035611-rid20009573.denovo.22, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOKTV010000005.1 Salmonella enterica strain PNUSAS396390 SAMN38035611-rid20009573.denovo.05, whole genome shotgun sequence	3395..3656																																																avrA	ABOKTV010000002.1	585481..586350	99.54	870	0						
GCA_033136125.1_PDT001961418.1_genomic.fna	Salmonella_enterica	0.5212	489.889 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKTT010000001.1 Salmonella enterica strain PNUSAS396382 SAMN38035610-rid20009843.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKTT010000027.1 Salmonella enterica strain PNUSAS396382 SAMN38035610-rid20009843.guided.18, whole genome shotgun sequence	12267..12704	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKTT010000018.1 Salmonella enterica strain PNUSAS396382 SAMN38035610-rid20009843.denovo.19, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABOKTT010000019.1 Salmonella enterica strain PNUSAS396382 SAMN38035610-rid20009843.denovo.22, whole genome shotgun sequence	3395..3656																																																avrA	ABOKTT010000002.1	585481..586350	99.54	870	0						
GCA_033136145.1_PDT001961407.1_genomic.fna	Salmonella_enterica	0.5213	412.518 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKTU010000001.1 Salmonella enterica strain PNUSAS396391 SAMN38035612-rid20009733.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKTU010000027.1 Salmonella enterica strain PNUSAS396391 SAMN38035612-rid20009733.guided.20, whole genome shotgun sequence	13663..14100	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKTU010000019.1 Salmonella enterica strain PNUSAS396391 SAMN38035612-rid20009733.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOKTU010000020.1 Salmonella enterica strain PNUSAS396391 SAMN38035612-rid20009733.denovo.22, whole genome shotgun sequence	3403..3664																																																avrA	ABOKTU010000002.1	585481..586350	99.54	870	0						
GCA_033136165.1_PDT001961390.1_genomic.fna	Salmonella_enterica	0.5199	430.206 KB	4	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncX1	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKTW010000001.1 Salmonella enterica strain PNUSAS396383 SAMN38035578-rid20009563.denovo.01, whole genome shotgun sequence	1100399..1100836	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKTW010000026.1 Salmonella enterica strain PNUSAS396383 SAMN38035578-rid20009563.guided.19, whole genome shotgun sequence	20671..21108	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOKTW010000014.1 Salmonella enterica strain PNUSAS396383 SAMN38035578-rid20009563.denovo.14, whole genome shotgun sequence	6118..6651	enterobacteriales	IncX1	98.4	374 / 374	ABOKTW010000017.1 Salmonella enterica strain PNUSAS396383 SAMN38035578-rid20009563.denovo.17, whole genome shotgun sequence	6956..7329																																																avrA	ABOKTW010000009.1	150695..151565	99.196	871	0						
GCA_033136205.1_PDT001961387.1_genomic.fna	Salmonella_enterica	0.5222	263.342 KB	6	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKTX010000001.1 Salmonella enterica strain PNUSAS396384 SAMN38035577-rid20009533.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKTX010000040.1 Salmonella enterica strain PNUSAS396384 SAMN38035577-rid20009533.guided.27, whole genome shotgun sequence	13811..14248	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKTX010000002.1	149829..150698	99.655	870	0						
GCA_033136285.1_PDT001961239.1_genomic.fna	Salmonella_enterica	0.5213	406.794 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKUF010000001.1 Salmonella enterica strain PNUSAS396381 SAMN38034812-rid20009133.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKUF010000026.1 Salmonella enterica strain PNUSAS396381 SAMN38034812-rid20009133.guided.20, whole genome shotgun sequence	4616..5053	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKUF010000016.1 Salmonella enterica strain PNUSAS396381 SAMN38034812-rid20009133.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOKUF010000017.1 Salmonella enterica strain PNUSAS396381 SAMN38034812-rid20009133.denovo.19, whole genome shotgun sequence	3393..3654																																																avrA	ABOKUF010000002.1	553636..554505	99.54	870	0						
GCA_033136305.1_PDT001961386.1_genomic.fna	Salmonella_enterica	0.5214	439.906 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKUA010000001.1 Salmonella enterica strain PNUSAS396394 SAMN38035576-rid20009523.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKUA010000028.1 Salmonella enterica strain PNUSAS396394 SAMN38035576-rid20009523.guided.24, whole genome shotgun sequence	2321..2758	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKUA010000020.1 Salmonella enterica strain PNUSAS396394 SAMN38035576-rid20009523.denovo.20, whole genome shotgun sequence	6819..7461	enterobacteriales	IncFII(S)	100	262 / 262	ABOKUA010000021.1 Salmonella enterica strain PNUSAS396394 SAMN38035576-rid20009523.denovo.21, whole genome shotgun sequence	3384..3645																																																avrA	ABOKUA010000002.1	553684..554553	99.54	870	0						
GCA_033136345.1_PDT001961232.1_genomic.fna	Salmonella_enterica	0.5217	312.88 KB	5	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_56,thrA_8	129	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	0		aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_56	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKUE010000001.1 Salmonella enterica strain PNUSAS396377 SAMN38034813-rid20009073.denovo.01, whole genome shotgun sequence	570074..570511	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKUE010000036.1 Salmonella enterica strain PNUSAS396377 SAMN38034813-rid20009073.guided.27, whole genome shotgun sequence	3334..3771	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																	
GCA_033136385.1_PDT001961231.1_genomic.fna	Salmonella_enterica	0.5226	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_112,sucA_9,thrA_2	313	4:i:1,2	9	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aadA1,aadA1,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1,dfrA1	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_112	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKUG010000002.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.denovo.02, whole genome shotgun sequence	207378..207815	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKUG010000033.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.denovo.34, whole genome shotgun sequence	13992..14828	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKUG010000033.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.denovo.34, whole genome shotgun sequence	14828..15631	Streptomycin	AF321551	aadA1	100	792/792	ABOKUG010000033.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.denovo.34, whole genome shotgun sequence	11388..12179	Spectinomycin, Streptomycin	JX185132	aadA1	100	792/792	ABOKUG010000058.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.guided.39, whole genome shotgun sequence	1811..2602	Spectinomycin, Streptomycin	JX185132	aph(6)-Id	100	837/837	ABOKUG010000061.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.guided.44, whole genome shotgun sequence	3580..4416	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKUG010000061.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.guided.44, whole genome shotgun sequence	2777..3580	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOKUG010000062.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.guided.45, whole genome shotgun sequence	1695..2132	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOKUG010000043.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.denovo.50, whole genome shotgun sequence	534..1394	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOKUG010000063.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.guided.49, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	ABOKUG010000033.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.denovo.34, whole genome shotgun sequence	3312..3971	Chloramphenicol	V00622	catA1	99.85	660/660	ABOKUG010000059.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.guided.40, whole genome shotgun sequence	1893..2552	Chloramphenicol	V00622	sul1	100	840/840	ABOKUG010000033.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.denovo.34, whole genome shotgun sequence	10044..10883	Sulfamethoxazole	U12338	sul2	100	816/816	ABOKUG010000033.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.denovo.34, whole genome shotgun sequence	15692..16507	Sulfamethoxazole	HQ840942	sul1	100	840/840	ABOKUG010000058.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.guided.39, whole genome shotgun sequence	3107..3946	Sulfamethoxazole	U12338	sul2	100	816/816	ABOKUG010000061.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.guided.44, whole genome shotgun sequence	1901..2716	Sulfamethoxazole	HQ840942	dfrA1	99.79	474/474	ABOKUG010000033.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.denovo.34, whole genome shotgun sequence	12272..12745	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABOKUG010000033.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.denovo.34, whole genome shotgun sequence	12272..12745	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABOKUG010000033.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.denovo.34, whole genome shotgun sequence	12272..12745	Trimethoprim	X00926	dfrA1	99.79	474/474	ABOKUG010000058.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.guided.39, whole genome shotgun sequence	1245..1718	Trimethoprim	AF203818	dfrA1	99.79	474/474	ABOKUG010000058.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.guided.39, whole genome shotgun sequence	1245..1718	Trimethoprim	AJ238350	dfrA1	99.79	474/474	ABOKUG010000058.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.guided.39, whole genome shotgun sequence	1245..1718	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																		enterobacteriales	IncFIB(S)	100	643 / 643	ABOKUG010000020.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.denovo.20, whole genome shotgun sequence	6821..7463	enterobacteriales	IncFII(S)	100	262 / 262	ABOKUG010000020.1 Salmonella enterica strain PNUSAS396376 SAMN38034807-rid20009063.denovo.20, whole genome shotgun sequence	22524..22785																																																avrA	ABOKUG010000001.1	483290..484159	99.885	870	0						
GCA_033136625.1_PDT001961457.1_genomic.fna	Salmonella_enterica	0.519	492.928 KB	4	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),IncFII(p96A)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOKUH010000001.1 Salmonella enterica strain PNUSAS396408 SAMN38035985-rid20010233.denovo.01, whole genome shotgun sequence	779765..780202	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOKUH010000030.1 Salmonella enterica strain PNUSAS396408 SAMN38035985-rid20010233.guided.13, whole genome shotgun sequence	16458..16895	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOKUH010000024.1 Salmonella enterica strain PNUSAS396408 SAMN38035985-rid20010233.denovo.27, whole genome shotgun sequence	239..369	enterobacteriales	IncFII(p96A)	99.06	534 / 534	ABOKUH010000017.1 Salmonella enterica strain PNUSAS396408 SAMN38035985-rid20010233.denovo.19, whole genome shotgun sequence	557..1090																																																avrA	ABOKUH010000002.1	655694..656563	99.425	870	0						
GCA_033136645.1_PDT001961456.1_genomic.fna	Salmonella_enterica	0.5208	430.266 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKUJ010000001.1 Salmonella enterica strain PNUSAS396417 SAMN38035976-rid20010223.denovo.01, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKUJ010000034.1 Salmonella enterica strain PNUSAS396417 SAMN38035976-rid20010223.guided.14, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABOKUJ010000024.1 Salmonella enterica strain PNUSAS396417 SAMN38035976-rid20010223.denovo.27, whole genome shotgun sequence	3981..4111																																																						avrA	ABOKUJ010000012.1	94937..95805	99.195	870	0						
GCA_033136665.1_PDT001961452.1_genomic.fna	Salmonella_enterica	0.5193	655.587 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI2(Delta)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKUI010000003.1 Salmonella enterica strain PNUSAS396430 SAMN38035992-rid20010183.denovo.03, whole genome shotgun sequence	257278..257715	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKUI010000026.1 Salmonella enterica strain PNUSAS396430 SAMN38035992-rid20010183.guided.10, whole genome shotgun sequence	11386..11823	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI2(Delta)	98.42	316 / 316	ABOKUI010000012.1 Salmonella enterica strain PNUSAS396430 SAMN38035992-rid20010183.denovo.14, whole genome shotgun sequence	28461..28776																																																						avrA	ABOKUI010000002.1	496416..497284	99.425	870	0						
GCA_033136685.1_PDT001961434.1_genomic.fna	Salmonella_enterica	0.5211	331.263 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKUK010000001.1 Salmonella enterica strain PNUSAS396419 SAMN38035958-rid20010003.denovo.01, whole genome shotgun sequence	586438..586875	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKUK010000034.1 Salmonella enterica strain PNUSAS396419 SAMN38035958-rid20010003.guided.17, whole genome shotgun sequence	17772..18209	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKUK010000010.1	140193..141061	99.195	870	0						
GCA_033136705.1_PDT001961427.1_genomic.fna	Salmonella_enterica	0.5201	403.037 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKUL010000001.1 Salmonella enterica strain PNUSAS396426 SAMN38035951-rid20009933.denovo.01, whole genome shotgun sequence	516968..517405	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKUL010000033.1 Salmonella enterica strain PNUSAS396426 SAMN38035951-rid20009933.guided.15, whole genome shotgun sequence	36681..37118	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKUL010000011.1	94945..95813	99.195	870	0						
GCA_033137685.1_PDT001961450.1_genomic.fna	Salmonella_enterica	0.5194	256.172 KB	7	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKUT010000005.1 Salmonella enterica strain PNUSAS396403 SAMN38035981-rid20010163.denovo.05, whole genome shotgun sequence	221074..221511	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKUT010000044.1 Salmonella enterica strain PNUSAS396403 SAMN38035981-rid20010163.guided.23, whole genome shotgun sequence	28629..29066	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOKUT010000021.1 Salmonella enterica strain PNUSAS396403 SAMN38035981-rid20010163.denovo.22, whole genome shotgun sequence	22224..22757																																																						avrA	ABOKUT010000010.1	140157..141025	99.195	870	0						
GCA_033137705.1_PDT001961448.1_genomic.fna	Salmonella_enterica	0.5216	524.669 KB	3	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKUV010000001.1 Salmonella enterica strain PNUSAS396435 SAMN38035989-rid20010143.denovo.01, whole genome shotgun sequence	597230..597667	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKUV010000021.1 Salmonella enterica strain PNUSAS396435 SAMN38035989-rid20010143.guided.09, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKUV010000002.1	553583..554452	99.77	870	0						
GCA_033137725.1_PDT001961437.1_genomic.fna	Salmonella_enterica	0.5217	523.206 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKUU010000001.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.denovo.01, whole genome shotgun sequence	172199..172636	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOKUU010000020.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.denovo.24, whole genome shotgun sequence	1348..2127	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOKUU010000026.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.guided.13, whole genome shotgun sequence	14364..14801	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOKUU010000030.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.guided.26, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOKUU010000020.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.denovo.24, whole genome shotgun sequence	2257..3123	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOKUU010000030.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.guided.26, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOKUU010000021.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.denovo.25, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOKUU010000029.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.guided.23, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOKUU010000018.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.denovo.21, whole genome shotgun sequence	4098..5311	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOKUU010000031.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.guided.27, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOKUU010000020.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.denovo.24, whole genome shotgun sequence	3383..4039	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOKUU010000030.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.guided.26, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOKUU010000020.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.denovo.24, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOKUU010000033.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.guided.29, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOKUU010000018.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.denovo.21, whole genome shotgun sequence	2223..3497	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOKUU010000032.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.guided.28, whole genome shotgun sequence	2264..3538	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOKUU010000018.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.denovo.21, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOKUU010000032.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.guided.28, whole genome shotgun sequence	633..1106	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOKUU010000016.1 Salmonella enterica strain PNUSAS396428 SAMN38035948-rid20010033.denovo.19, whole genome shotgun sequence	8402..8652																																																						avrA	ABOKUU010000002.1	553473..554342	99.77	870	0						
GCA_033137745.1_PDT001961432.1_genomic.fna	Salmonella_enterica	0.5225	375.566 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKUX010000001.1 Salmonella enterica strain PNUSAS396429 SAMN38035949-rid20009983.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKUX010000031.1 Salmonella enterica strain PNUSAS396429 SAMN38035949-rid20009983.guided.14, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKUX010000004.1	39534..40403	99.655	870	0						
GCA_033137765.1_PDT001961420.1_genomic.fna	Salmonella_enterica	0.521	489.889 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKUZ010000001.1 Salmonella enterica strain PNUSAS396388 SAMN38035613-rid20009863.denovo.01, whole genome shotgun sequence	161912..162349	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKUZ010000025.1 Salmonella enterica strain PNUSAS396388 SAMN38035613-rid20009863.guided.14, whole genome shotgun sequence	4035..4472	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKUZ010000017.1 Salmonella enterica strain PNUSAS396388 SAMN38035613-rid20009863.denovo.19, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOKUZ010000018.1 Salmonella enterica strain PNUSAS396388 SAMN38035613-rid20009863.denovo.20, whole genome shotgun sequence	3423..3684																																																avrA	ABOKUZ010000002.1	585481..586350	99.54	870	0						
GCA_033137785.1_PDT001961435.1_genomic.fna	Salmonella_enterica	0.5219	619.867 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	2	aac(6')-Iaa,aac(6')-Iaa,blaTEM-1B,blaTEM-1B	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKUW010000001.1 Salmonella enterica strain PNUSAS396431 SAMN38035961-rid20010013.denovo.01, whole genome shotgun sequence	604231..604668	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKUW010000033.1 Salmonella enterica strain PNUSAS396431 SAMN38035961-rid20010013.guided.15, whole genome shotgun sequence	31282..31719	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOKUW010000022.1 Salmonella enterica strain PNUSAS396431 SAMN38035961-rid20010013.denovo.25, whole genome shotgun sequence	1946..2806	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOKUW010000036.1 Salmonella enterica strain PNUSAS396431 SAMN38035961-rid20010013.guided.28, whole genome shotgun sequence	1064..1924	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABOKUW010000004.1	401481..402350	99.655	870	0						
GCA_033137805.1_PDT001961421.1_genomic.fna	Salmonella_enterica	0.5214	342.904 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKUY010000001.1 Salmonella enterica strain PNUSAS396389 SAMN38035616-rid20009873.denovo.01, whole genome shotgun sequence	724150..724587	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKUY010000031.1 Salmonella enterica strain PNUSAS396389 SAMN38035616-rid20009873.guided.27, whole genome shotgun sequence	226..663	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKUY010000016.1 Salmonella enterica strain PNUSAS396389 SAMN38035616-rid20009873.denovo.16, whole genome shotgun sequence	53897..54539	enterobacteriales	IncFII(S)	100	262 / 262	ABOKUY010000022.1 Salmonella enterica strain PNUSAS396389 SAMN38035616-rid20009873.denovo.23, whole genome shotgun sequence	3439..3700																																																avrA	ABOKUY010000002.1	553642..554511	99.54	870	0						
GCA_033138025.1_PDT001961455.1_genomic.fna	Salmonella_enterica	0.5214	189.134 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKVO010000001.1 Salmonella enterica strain PNUSAS396409 SAMN38035984-rid20010213.denovo.01, whole genome shotgun sequence	145462..145899	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKVO010000051.1 Salmonella enterica strain PNUSAS396409 SAMN38035984-rid20010213.guided.23, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKVO010000004.1	174642..175510	99.77	870	0						
GCA_033138045.1_PDT001961385.1_genomic.fna	Salmonella_enterica	0.521	430.195 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKVN010000001.1 Salmonella enterica strain PNUSAS396385 SAMN38035574-rid20009513.denovo.01, whole genome shotgun sequence	628391..628828	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKVN010000029.1 Salmonella enterica strain PNUSAS396385 SAMN38035574-rid20009513.guided.21, whole genome shotgun sequence	8837..9274	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOKVN010000015.1 Salmonella enterica strain PNUSAS396385 SAMN38035574-rid20009513.denovo.15, whole genome shotgun sequence	7738..8271																																																						avrA	ABOKVN010000008.1	192358..193228	99.196	871	0						
GCA_033138105.1_PDT001961428.1_genomic.fna	Salmonella_enterica	0.5221	337.574 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKVL010000001.1 Salmonella enterica strain PNUSAS396421 SAMN38035952-rid20009943.denovo.01, whole genome shotgun sequence	622355..622792	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKVL010000027.1 Salmonella enterica strain PNUSAS396421 SAMN38035952-rid20009943.guided.14, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKVL010000002.1	149646..150515	99.655	870	0						
GCA_033138345.1_PDT001961429.1_genomic.fna	Salmonella_enterica	0.5205	300.272 KB	7	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKVS010000005.1 Salmonella enterica strain PNUSAS396424 SAMN38035953-rid20009953.denovo.05, whole genome shotgun sequence	170806..171243	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKVS010000034.1 Salmonella enterica strain PNUSAS396424 SAMN38035953-rid20009953.guided.15, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKVS010000002.1	256211..257080	99.31	870	0						
GCA_033138685.1_PDT001955960.1_genomic.fna	Salmonella_enterica	0.5206	537.34 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKWA010000003.1 Salmonella enterica strain PNUSAS396190 SAMN38018360-rid19971253.denovo.03, whole genome shotgun sequence	397391..397828	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKWA010000037.1 Salmonella enterica strain PNUSAS396190 SAMN38018360-rid19971253.guided.22, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKWA010000002.1	555923..556791	99.425	870	0						
GCA_033138705.1_PDT001961447.1_genomic.fna	Salmonella_enterica	0.5213	253.826 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKVZ010000004.1 Salmonella enterica strain PNUSAS396410 SAMN38035974-rid20010133.denovo.04, whole genome shotgun sequence	68378..68815	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKVZ010000040.1 Salmonella enterica strain PNUSAS396410 SAMN38035974-rid20010133.guided.20, whole genome shotgun sequence	1154..1591	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOKVZ010000015.1 Salmonella enterica strain PNUSAS396410 SAMN38035974-rid20010133.denovo.15, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOKVZ010000015.1 Salmonella enterica strain PNUSAS396410 SAMN38035974-rid20010133.denovo.15, whole genome shotgun sequence	30406..30667																																																avrA	ABOKVZ010000001.1	434462..435330	100	869	0						
GCA_033138725.1_PDT001955959.1_genomic.fna	Salmonella_enterica	0.5207	257.621 KB	7	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKWG010000013.1 Salmonella enterica strain PNUSAS396187 SAMN38018362-rid19972443.denovo.13, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKWG010000062.1 Salmonella enterica strain PNUSAS396187 SAMN38018362-rid19972443.guided.25, whole genome shotgun sequence	42435..42872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOKWG010000021.1 Salmonella enterica strain PNUSAS396187 SAMN38018362-rid19972443.denovo.21, whole genome shotgun sequence	34957..35490																																																						avrA	ABOKWG010000002.1	39478..40344	98.966	870	0						
GCA_033138745.1_PDT001955958.1_genomic.fna	Salmonella_enterica	0.5209	215.724 KB	7	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKWB010000001.1 Salmonella enterica strain PNUSAS396191 SAMN38018361-rid19972853.denovo.01, whole genome shotgun sequence	384678..385115	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKWB010000054.1 Salmonella enterica strain PNUSAS396191 SAMN38018361-rid19972853.guided.30, whole genome shotgun sequence	17104..17541	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKWB010000008.1	150788..151658	99.196	871	0						
GCA_033138765.1_PDT001955956.1_genomic.fna	Salmonella_enterica	0.5221	397.493 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKWF010000001.1 Salmonella enterica strain PNUSAS396194 SAMN38018355-rid19972423.denovo.01, whole genome shotgun sequence	833828..834265	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKWF010000040.1 Salmonella enterica strain PNUSAS396194 SAMN38018355-rid19972423.guided.18, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	90.91	132 / 131	ABOKWF010000020.1 Salmonella enterica strain PNUSAS396194 SAMN38018355-rid19972423.denovo.23, whole genome shotgun sequence	5384..5514																																																						avrA	ABOKWF010000006.1	129887..130756	98.966	870	0						
GCA_033138785.1_PDT001955955.1_genomic.fna	Salmonella_enterica	0.521	401.504 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKWD010000001.1 Salmonella enterica strain PNUSAS396195 SAMN38018349-rid19971243.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKWD010000032.1 Salmonella enterica strain PNUSAS396195 SAMN38018349-rid19971243.guided.21, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKWD010000020.1 Salmonella enterica strain PNUSAS396195 SAMN38018349-rid19971243.denovo.22, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABOKWD010000022.1 Salmonella enterica strain PNUSAS396195 SAMN38018349-rid19971243.denovo.25, whole genome shotgun sequence	3380..3641																																																avrA	ABOKWD010000007.1	174782..175651	99.54	870	0						
GCA_033138805.1_PDT001955951.1_genomic.fna	Salmonella_enterica	0.5217	204.881 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKWC010000001.1 Salmonella enterica strain PNUSAS396198 SAMN38018353-rid19972393.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKWC010000049.1 Salmonella enterica strain PNUSAS396198 SAMN38018353-rid19972393.guided.23, whole genome shotgun sequence	31736..32173	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKWC010000006.1	39584..40453	99.655	870	0						
GCA_033138825.1_PDT001955952.1_genomic.fna	Salmonella_enterica	0.5207	410.978 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOKWE010000002.1 Salmonella enterica strain PNUSAS396199 SAMN38018356-rid19972743.denovo.02, whole genome shotgun sequence	177159..177596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOKWE010000042.1 Salmonella enterica strain PNUSAS396199 SAMN38018356-rid19972743.guided.14, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOKWE010000015.1 Salmonella enterica strain PNUSAS396199 SAMN38018356-rid19972743.denovo.16, whole genome shotgun sequence	2465..2998																																																						avrA	ABOKWE010000001.1	517003..517872	99.77	870	0						
GCA_033138845.1_PDT001955949.1_genomic.fna	Salmonella_enterica	0.5209	370.243 KB	4	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKWJ010000001.1 Salmonella enterica strain PNUSAS396185 SAMN38018351-rid19972383.denovo.01, whole genome shotgun sequence	1079059..1079496	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKWJ010000024.1 Salmonella enterica strain PNUSAS396185 SAMN38018351-rid19972383.denovo.27, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOKWJ010000024.1 Salmonella enterica strain PNUSAS396185 SAMN38018351-rid19972383.denovo.27, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOKWJ010000024.1 Salmonella enterica strain PNUSAS396185 SAMN38018351-rid19972383.denovo.27, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOKWJ010000024.1 Salmonella enterica strain PNUSAS396185 SAMN38018351-rid19972383.denovo.27, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOKWJ010000024.1 Salmonella enterica strain PNUSAS396185 SAMN38018351-rid19972383.denovo.27, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOKWJ010000048.1 Salmonella enterica strain PNUSAS396185 SAMN38018351-rid19972383.guided.12, whole genome shotgun sequence	42432..42869	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKWJ010000051.1 Salmonella enterica strain PNUSAS396185 SAMN38018351-rid19972383.guided.28, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOKWJ010000051.1 Salmonella enterica strain PNUSAS396185 SAMN38018351-rid19972383.guided.28, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOKWJ010000051.1 Salmonella enterica strain PNUSAS396185 SAMN38018351-rid19972383.guided.28, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOKWJ010000051.1 Salmonella enterica strain PNUSAS396185 SAMN38018351-rid19972383.guided.28, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOKWJ010000051.1 Salmonella enterica strain PNUSAS396185 SAMN38018351-rid19972383.guided.28, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOKWJ010000025.1 Salmonella enterica strain PNUSAS396185 SAMN38018351-rid19972383.denovo.30, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOKWJ010000052.1 Salmonella enterica strain PNUSAS396185 SAMN38018351-rid19972383.guided.29, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOKWJ010000014.1 Salmonella enterica strain PNUSAS396185 SAMN38018351-rid19972383.denovo.15, whole genome shotgun sequence	69143..69284																																																						avrA	ABOKWJ010000006.1	39546..40415	99.655	870	0						
GCA_033138865.1_PDT001955950.1_genomic.fna	Salmonella_enterica	0.5212	198.606 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKWH010000001.1 Salmonella enterica strain PNUSAS396196 SAMN38018346-rid19971233.denovo.01, whole genome shotgun sequence	233303..233740	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKWH010000052.1 Salmonella enterica strain PNUSAS396196 SAMN38018346-rid19971233.guided.22, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKWH010000005.1	95312..96180	99.77	870	0						
GCA_033138885.1_PDT001955931.1_genomic.fna	Salmonella_enterica	0.5207	406.451 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKWO010000001.1 Salmonella enterica strain PNUSAS396167 SAMN38018306-rid19972273.denovo.01, whole genome shotgun sequence	706522..706959	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKWO010000028.1 Salmonella enterica strain PNUSAS396167 SAMN38018306-rid19972273.guided.22, whole genome shotgun sequence	8840..9277	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKWO010000016.1 Salmonella enterica strain PNUSAS396167 SAMN38018306-rid19972273.denovo.16, whole genome shotgun sequence	40532..41174	enterobacteriales	IncFII(S)	100	262 / 262	ABOKWO010000020.1 Salmonella enterica strain PNUSAS396167 SAMN38018306-rid19972273.denovo.23, whole genome shotgun sequence	3428..3689		enterobacteriales	IncX1	98.93	374 / 374	ABOKWO010000017.1 Salmonella enterica strain PNUSAS396167 SAMN38018306-rid19972273.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABOKWO010000002.1	553684..554553	99.54	870	0						
GCA_033138905.1_PDT001955946.1_genomic.fna	Salmonella_enterica	0.5207	489.741 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKWK010000001.1 Salmonella enterica strain PNUSAS396189 SAMN38018350-rid19971223.denovo.01, whole genome shotgun sequence	293263..293700	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKWK010000030.1 Salmonella enterica strain PNUSAS396189 SAMN38018350-rid19971223.guided.14, whole genome shotgun sequence	38632..39069	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKWK010000018.1 Salmonella enterica strain PNUSAS396189 SAMN38018350-rid19971223.denovo.21, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOKWK010000019.1 Salmonella enterica strain PNUSAS396189 SAMN38018350-rid19971223.denovo.22, whole genome shotgun sequence	3415..3676																																																avrA	ABOKWK010000002.1	552776..553645	99.54	870	0						
GCA_033138945.1_PDT001955930.1_genomic.fna	Salmonella_enterica	0.5222	398.019 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKWM010000001.1 Salmonella enterica strain PNUSAS396165 SAMN38018305-rid19971163.denovo.01, whole genome shotgun sequence	814328..814765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKWM010000023.1 Salmonella enterica strain PNUSAS396165 SAMN38018305-rid19971163.guided.18, whole genome shotgun sequence	8799..9236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKWM010000005.1	174128..174997	99.655	870	0						
GCA_033138965.1_PDT001955926.1_genomic.fna	Salmonella_enterica	0.5211	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKWN010000001.1 Salmonella enterica strain PNUSAS396166 SAMN38018307-rid19972243.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKWN010000030.1 Salmonella enterica strain PNUSAS396166 SAMN38018307-rid19972243.guided.22, whole genome shotgun sequence	8853..9290	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKWN010000019.1 Salmonella enterica strain PNUSAS396166 SAMN38018307-rid19972243.denovo.20, whole genome shotgun sequence	6839..7481	enterobacteriales	IncFII(S)	100	262 / 262	ABOKWN010000020.1 Salmonella enterica strain PNUSAS396166 SAMN38018307-rid19972243.denovo.23, whole genome shotgun sequence	3382..3643																																																avrA	ABOKWN010000004.1	140648..141517	99.54	870	0						
GCA_033138985.1_PDT001955925.1_genomic.fna	Salmonella_enterica	0.5212	345.6 KB	4	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKWL010000001.1 Salmonella enterica strain PNUSAS396168 SAMN38018302-rid19971153.denovo.01, whole genome shotgun sequence	593008..593445	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKWL010000027.1 Salmonella enterica strain PNUSAS396168 SAMN38018302-rid19971153.guided.22, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033139165.1_PDT001955953.1_genomic.fna	Salmonella_enterica	0.5187	210.092 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		6	ColRNAI,IncFIA(HI1),IncFIB(S),IncFII(S),IncHI1A,IncHI1B(R27)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKWR010000001.1 Salmonella enterica strain PNUSAS396186 SAMN38018354-rid19972403.denovo.01, whole genome shotgun sequence	23479..23916	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKWR010000077.1 Salmonella enterica strain PNUSAS396186 SAMN38018354-rid19972403.guided.48, whole genome shotgun sequence	347..784	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOKWR010000022.1 Salmonella enterica strain PNUSAS396186 SAMN38018354-rid19972403.denovo.22, whole genome shotgun sequence	290..1495	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOKWR010000078.1 Salmonella enterica strain PNUSAS396186 SAMN38018354-rid19972403.guided.52, whole genome shotgun sequence	4291..5496	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	ColRNAI	90.08	131 / 130	ABOKWR010000051.1 Salmonella enterica strain PNUSAS396186 SAMN38018354-rid19972403.denovo.55, whole genome shotgun sequence	3981..4111	enterobacteriales	IncFIA(HI1)	100	388 / 388	ABOKWR010000057.1 Salmonella enterica strain PNUSAS396186 SAMN38018354-rid19972403.denovo.61, whole genome shotgun sequence	958..1345		enterobacteriales	IncFIB(S)	100	643 / 643	ABOKWR010000039.1 Salmonella enterica strain PNUSAS396186 SAMN38018354-rid19972403.denovo.40, whole genome shotgun sequence	6824..7466		enterobacteriales	IncFII(S)	100	262 / 262	ABOKWR010000045.1 Salmonella enterica strain PNUSAS396186 SAMN38018354-rid19972403.denovo.47, whole genome shotgun sequence	10433..10694		enterobacteriales	IncHI1A	99.76	420 / 420	ABOKWR010000025.1 Salmonella enterica strain PNUSAS396186 SAMN38018354-rid19972403.denovo.25, whole genome shotgun sequence	36751..37170		enterobacteriales	IncHI1B(R27)	100	540 / 540	ABOKWR010000025.1 Salmonella enterica strain PNUSAS396186 SAMN38018354-rid19972403.denovo.25, whole genome shotgun sequence	23135..23674	R27																			avrA	ABOKWR010000009.1	35890..36758	100	869	0						
GCA_033139185.1_PDT001961458.1_genomic.fna	Salmonella_enterica	0.5212	538.095 KB	4	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncL	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOKWQ010000001.1 Salmonella enterica strain PNUSAS396415 SAMN38035982-rid20010243.denovo.01, whole genome shotgun sequence	492161..492598	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOKWQ010000024.1 Salmonella enterica strain PNUSAS396415 SAMN38035982-rid20010243.guided.11, whole genome shotgun sequence	42430..42867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncL	97.14	664 / 661	ABOKWQ010000013.1 Salmonella enterica strain PNUSAS396415 SAMN38035982-rid20010243.denovo.15, whole genome shotgun sequence	16088..16750																																																						avrA	ABOKWQ010000002.1	545457..546325	99.655	869	0						
GCA_033139245.1_PDT001955948.1_genomic.fna	Salmonella_enterica	0.5214	221.557 KB	8	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	4	aac(6')-Iaa,aph(3'')-Ib,aac(6')-Iaa,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	3	Col(pHAD28),ColRNAI,IncQ1,IncQ1	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOKWV010000003.1 Salmonella enterica strain PNUSAS396188 SAMN38018357-rid19972843.denovo.03, whole genome shotgun sequence	223402..223839	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	671/804	ABOKWV010000031.1 Salmonella enterica strain PNUSAS396188 SAMN38018357-rid19972843.denovo.35, whole genome shotgun sequence	8803..9473	Streptomycin	AF321551	aac(6')-Iaa	98.17	438/438	ABOKWV010000042.1 Salmonella enterica strain PNUSAS396188 SAMN38018357-rid19972843.guided.30, whole genome shotgun sequence	9431..9868	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	695/804	ABOKWV010000044.1 Salmonella enterica strain PNUSAS396188 SAMN38018357-rid19972843.guided.34, whole genome shotgun sequence	1184..1878	Streptomycin	AF321551	sul2	100	816/816	ABOKWV010000031.1 Salmonella enterica strain PNUSAS396188 SAMN38018357-rid19972843.denovo.35, whole genome shotgun sequence	85..900	Sulfamethoxazole	FN995456	sul2	100	816/816	ABOKWV010000044.1 Salmonella enterica strain PNUSAS396188 SAMN38018357-rid19972843.guided.34, whole genome shotgun sequence	308..1123	Sulfamethoxazole	FN995456	tet(A)	99.92	1200/1200	ABOKWV010000031.1 Salmonella enterica strain PNUSAS396188 SAMN38018357-rid19972843.denovo.35, whole genome shotgun sequence	6703..7902	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOKWV010000044.1 Salmonella enterica strain PNUSAS396188 SAMN38018357-rid19972843.guided.34, whole genome shotgun sequence	2779..3978	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOKWV010000032.1 Salmonella enterica strain PNUSAS396188 SAMN38018357-rid19972843.denovo.36, whole genome shotgun sequence	239..369	enterobacteriales	ColRNAI	90.08	131 / 130	ABOKWV010000033.1 Salmonella enterica strain PNUSAS396188 SAMN38018357-rid19972843.denovo.37, whole genome shotgun sequence	3981..4111		enterobacteriales	IncQ1	100	796 / 796	ABOKWV010000031.1 Salmonella enterica strain PNUSAS396188 SAMN38018357-rid19972843.denovo.35, whole genome shotgun sequence	2240..3035		enterobacteriales	IncQ1	100	796 / 796	ABOKWV010000044.1 Salmonella enterica strain PNUSAS396188 SAMN38018357-rid19972843.guided.34, whole genome shotgun sequence	7646..8441																																		avrA	ABOKWV010000008.1	39348..40217	99.425	870	0						
GCA_033139265.1_PDT001955947.1_genomic.fna	Salmonella_enterica	0.5217	497.173 KB	4	aroC_11,dnaN_10,hemD_25,hisD_118,purE_10,sucA_13,thrA_4	343	4:e,h:e,n,x	2	aac(6')-Iaa,blaTEM-1B,blaTEM-1B	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_118	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	e,h	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Chester		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOKWT010000002.1 Salmonella enterica strain PNUSAS396193 SAMN38018347-rid19972373.denovo.02, whole genome shotgun sequence	623127..623564	Amikacin, Tobramycin	NC_003197	blaTEM-1B	100	861/861	ABOKWT010000015.1 Salmonella enterica strain PNUSAS396193 SAMN38018347-rid19972373.denovo.15, whole genome shotgun sequence	62210..63070	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOKWT010000037.1 Salmonella enterica strain PNUSAS396193 SAMN38018347-rid19972373.guided.24, whole genome shotgun sequence	6001..6861	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	94.93	138 / 142	ABOKWT010000015.1 Salmonella enterica strain PNUSAS396193 SAMN38018347-rid19972373.denovo.15, whole genome shotgun sequence	67403..67538																																																						avrA	ABOKWT010000003.1	94146..95015	99.54	870	0						
GCA_033139285.1_PDT001955945.1_genomic.fna	Salmonella_enterica	0.5224	413.941 KB	4	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKWS010000008.1 Salmonella enterica strain PNUSAS396192 SAMN38018348-rid19971213.denovo.08, whole genome shotgun sequence	145342..145779	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKWS010000032.1 Salmonella enterica strain PNUSAS396192 SAMN38018348-rid19971213.guided.22, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKWS010000003.1	507878..508747	99.77	870	0						
GCA_033139305.1_PDT001955944.1_genomic.fna	Salmonella_enterica	0.5215	400.257 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKWX010000001.1 Salmonella enterica strain PNUSAS396197 SAMN38018352-rid19971203.denovo.01, whole genome shotgun sequence	510589..511026	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKWX010000026.1 Salmonella enterica strain PNUSAS396197 SAMN38018352-rid19971203.guided.17, whole genome shotgun sequence	21731..22168	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKWX010000002.1	544416..545284	99.425	870	0						
GCA_033139365.1_PDT001955939.1_genomic.fna	Salmonella_enterica	0.5211	171.122 KB	8	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	ColRNAI	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKWZ010000003.1 Salmonella enterica strain PNUSAS396044 SAMN38018345-rid19972333.denovo.03, whole genome shotgun sequence	266249..266686	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKWZ010000054.1 Salmonella enterica strain PNUSAS396044 SAMN38018345-rid19972333.guided.31, whole genome shotgun sequence	10543..10980	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColRNAI	90.08	131 / 130	ABOKWZ010000042.1 Salmonella enterica strain PNUSAS396044 SAMN38018345-rid19972333.denovo.45, whole genome shotgun sequence	3981..4111																																																						avrA	ABOKWZ010000001.1	514960..515828	99.195	870	0						
GCA_033139385.1_PDT001955937.1_genomic.fna	Salmonella_enterica	0.5192	234.229 KB	9	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKXE010000002.1 Salmonella enterica strain PNUSAS396043 SAMN38018344-rid19972313.denovo.02, whole genome shotgun sequence	154464..154901	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKXE010000051.1 Salmonella enterica strain PNUSAS396043 SAMN38018344-rid19972313.guided.35, whole genome shotgun sequence	16447..16884	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOKXE010000038.1 Salmonella enterica strain PNUSAS396043 SAMN38018344-rid19972313.denovo.41, whole genome shotgun sequence	1480..1610	enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOKXE010000040.1 Salmonella enterica strain PNUSAS396043 SAMN38018344-rid19972313.denovo.43, whole genome shotgun sequence	547..675																																																avrA	ABOKXE010000011.1	39428..40297	98.966	870	0						
GCA_033139505.1_PDT001955928.1_genomic.fna	Salmonella_enterica	0.521	386.207 KB	4	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKXK010000001.1 Salmonella enterica strain PNUSAS396169 SAMN38018301-rid19972253.denovo.01, whole genome shotgun sequence	715327..715764	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKXK010000020.1 Salmonella enterica strain PNUSAS396169 SAMN38018301-rid19972253.guided.17, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKXK010000002.1	561986..562855	99.54	870	0						
GCA_033139525.1_PDT001955929.1_genomic.fna	Salmonella_enterica	0.5212	324.583 KB	6	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKXL010000001.1 Salmonella enterica strain PNUSAS396170 SAMN38018303-rid19972263.denovo.01, whole genome shotgun sequence	458967..459404	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKXL010000046.1 Salmonella enterica strain PNUSAS396170 SAMN38018303-rid19972263.guided.26, whole genome shotgun sequence	18005..18442	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col(pHAD28)	92.37	131 / 131	ABOKXL010000035.1 Salmonella enterica strain PNUSAS396170 SAMN38018303-rid19972263.denovo.38, whole genome shotgun sequence	358..488	enterobacteriales	IncFIB(S)	100	643 / 643	ABOKXL010000024.1 Salmonella enterica strain PNUSAS396170 SAMN38018303-rid19972263.denovo.24, whole genome shotgun sequence	24674..25316		enterobacteriales	IncFII(S)	100	262 / 262	ABOKXL010000024.1 Salmonella enterica strain PNUSAS396170 SAMN38018303-rid19972263.denovo.24, whole genome shotgun sequence	9328..9589																																									avrA	ABOKXL010000004.1	174642..175511	99.885	870	0						
GCA_033139545.1_PDT001955927.1_genomic.fna	Salmonella_enterica	0.5211	342.974 KB	3	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKXM010000001.1 Salmonella enterica strain PNUSAS396171 SAMN38018304-rid19972733.denovo.01, whole genome shotgun sequence	1100569..1101006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKXM010000025.1 Salmonella enterica strain PNUSAS396171 SAMN38018304-rid19972733.guided.20, whole genome shotgun sequence	15274..15711	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033139585.1_PDT001955901.1_genomic.fna	Salmonella_enterica	0.5215	178.599 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKXR010000001.1 Salmonella enterica strain PNUSAS395894 SAMN38017789-rid19972113.denovo.01, whole genome shotgun sequence	115023..115460	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKXR010000067.1 Salmonella enterica strain PNUSAS395894 SAMN38017789-rid19972113.guided.31, whole genome shotgun sequence	42423..42860	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABOKXR010000051.1 Salmonella enterica strain PNUSAS395894 SAMN38017789-rid19972113.denovo.54, whole genome shotgun sequence	483..636																																																						avrA	ABOKXR010000007.1	122865..123733	99.77	870	0						
GCA_033139645.1_PDT001955902.1_genomic.fna	Salmonella_enterica	0.5214	159.595 KB	9	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	6	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKXS010000001.1 Salmonella enterica strain PNUSAS395891 SAMN38017788-rid19972123.denovo.01, whole genome shotgun sequence	460177..460614	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOKXS010000054.1 Salmonella enterica strain PNUSAS395891 SAMN38017788-rid19972123.denovo.60, whole genome shotgun sequence	1053..2078	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOKXS010000054.1 Salmonella enterica strain PNUSAS395891 SAMN38017788-rid19972123.denovo.60, whole genome shotgun sequence	48..824	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOKXS010000068.1 Salmonella enterica strain PNUSAS395891 SAMN38017788-rid19972123.guided.47, whole genome shotgun sequence	15564..16001	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOKXS010000070.1 Salmonella enterica strain PNUSAS395891 SAMN38017788-rid19972123.guided.59, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOKXS010000070.1 Salmonella enterica strain PNUSAS395891 SAMN38017788-rid19972123.guided.59, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOKXS010000056.1 Salmonella enterica strain PNUSAS395891 SAMN38017788-rid19972123.denovo.63, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOKXS010000071.1 Salmonella enterica strain PNUSAS395891 SAMN38017788-rid19972123.guided.62, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOKXS010000051.1 Salmonella enterica strain PNUSAS395891 SAMN38017788-rid19972123.denovo.56, whole genome shotgun sequence	2741..3954	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOKXS010000069.1 Salmonella enterica strain PNUSAS395891 SAMN38017788-rid19972123.guided.55, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	tet(A)	100	1200/1200	ABOKXS010000036.1 Salmonella enterica strain PNUSAS395891 SAMN38017788-rid19972123.denovo.37, whole genome shotgun sequence	11639..12838	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOKXS010000067.1 Salmonella enterica strain PNUSAS395891 SAMN38017788-rid19972123.guided.44, whole genome shotgun sequence	1709..2908	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOKXS010000040.1 Salmonella enterica strain PNUSAS395891 SAMN38017788-rid19972123.denovo.41, whole genome shotgun sequence	9109..9668																																																						avrA	ABOKXS010000002.1	149551..150420	99.655	870	0						
GCA_033139665.1_PDT001955904.1_genomic.fna	Salmonella_enterica	0.5224	253.003 KB	7	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKXN010000001.1 Salmonella enterica strain PNUSAS395897 SAMN38017787-rid19971073.denovo.01, whole genome shotgun sequence	472443..472880	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKXN010000048.1 Salmonella enterica strain PNUSAS395897 SAMN38017787-rid19971073.guided.34, whole genome shotgun sequence	11142..11579	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKXN010000011.1	94005..94874	98.966	870	0						
GCA_033139685.1_PDT001955900.1_genomic.fna	Salmonella_enterica	0.5203	67.491 KB	22	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKXQ010000049.1 Salmonella enterica strain PNUSAS395892 SAMN38017784-rid19971053.denovo.049, whole genome shotgun sequence	14067..14504	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKXQ010000150.1 Salmonella enterica strain PNUSAS395892 SAMN38017784-rid19971053.guided.050, whole genome shotgun sequence	13979..14416	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOKXQ010000070.1 Salmonella enterica strain PNUSAS395892 SAMN38017784-rid19971053.denovo.072, whole genome shotgun sequence	17980..18402	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOKXQ010000152.1 Salmonella enterica strain PNUSAS395892 SAMN38017784-rid19971053.guided.073, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOKXQ010000074.1 Salmonella enterica strain PNUSAS395892 SAMN38017784-rid19971053.denovo.077, whole genome shotgun sequence	4720..4861																																																						avrA	ABOKXQ010000002.1	96024..96893	99.195	870	0						
GCA_033139705.1_PDT001955899.1_genomic.fna	Salmonella_enterica	0.521	215.982 KB	7	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	-:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	-	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	I -:m,t:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKXT010000001.1 Salmonella enterica strain PNUSAS395895 SAMN38017785-rid19972103.denovo.01, whole genome shotgun sequence	84620..85057	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKXT010000046.1 Salmonella enterica strain PNUSAS395895 SAMN38017785-rid19972103.guided.31, whole genome shotgun sequence	15903..16340	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033139725.1_PDT001955898.1_genomic.fna	Salmonella_enterica	0.5149	221.756 KB	7	aroC_235,dnaN_25,hemD_28,hisD_24,purE_237,sucA_26,thrA_78	869	18:z4,z23:-	0		1	parC_p.T57S	0		aroC	100	100	aroC_235	dnaN	100	100	dnaN_25	hemD	100	100	hemD_28	hisD	100	100	hisD_24	purE	100	100	purE_237	sucA	100	100	sucA_26	thrA	100	100	thrA_78	18	z4,z23	-	Salmonella enterica subspecies arizonae (subspecies IIIa)	IIIa 18:z4,z23:-		O	H1_fliC	H2_fljB																																																																																																																																																																																																																																																																																																																																																																																																																																																																								parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033139745.1_PDT001955897.1_genomic.fna	Salmonella_enterica	0.5214	375.794 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKXV010000001.1 Salmonella enterica strain PNUSAS395888 SAMN38017786-rid19972703.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKXV010000027.1 Salmonella enterica strain PNUSAS395888 SAMN38017786-rid19972703.guided.19, whole genome shotgun sequence	13785..14222	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKXV010000015.1 Salmonella enterica strain PNUSAS395888 SAMN38017786-rid19972703.denovo.15, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOKXV010000019.1 Salmonella enterica strain PNUSAS395888 SAMN38017786-rid19972703.denovo.22, whole genome shotgun sequence	3415..3676																																																avrA	ABOKXV010000002.1	553684..554553	99.54	870	0						
GCA_033139765.1_PDT001955893.1_genomic.fna	Salmonella_enterica	0.5217	198.872 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_412,thrA_2	Unknown	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_412	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKYC010000002.1 Salmonella enterica strain PNUSAS396090 SAMN38017769-rid19971023.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKYC010000044.1 Salmonella enterica strain PNUSAS396090 SAMN38017769-rid19971023.guided.26, whole genome shotgun sequence	37907..38344	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOKYC010000018.1 Salmonella enterica strain PNUSAS396090 SAMN38017769-rid19971023.denovo.18, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOKYC010000018.1 Salmonella enterica strain PNUSAS396090 SAMN38017769-rid19971023.denovo.18, whole genome shotgun sequence	30407..30668																																																avrA	ABOKYC010000009.1	94133..95001	100	869	0						
GCA_033139785.1_PDT001955896.1_genomic.fna	Salmonella_enterica	0.5217	138.472 KB	11	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKXW010000002.1 Salmonella enterica strain PNUSAS395889 SAMN38017791-rid19972093.denovo.02, whole genome shotgun sequence	134729..135166	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKXW010000064.1 Salmonella enterica strain PNUSAS395889 SAMN38017791-rid19972093.guided.51, whole genome shotgun sequence	6094..6531	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKXW010000030.1 Salmonella enterica strain PNUSAS395889 SAMN38017791-rid19972093.denovo.30, whole genome shotgun sequence	35860..36502	enterobacteriales	IncFII(S)	100	262 / 262	ABOKXW010000030.1 Salmonella enterica strain PNUSAS395889 SAMN38017791-rid19972093.denovo.30, whole genome shotgun sequence	50979..51240																																																avrA	ABOKXW010000008.1	175197..176066	99.54	870	0						
GCA_033139805.1_PDT001955895.1_genomic.fna	Salmonella_enterica	0.5222	432.425 KB	3	aroC_11,dnaN_10,hemD_13,hisD_32,purE_10,sucA_13,thrA_4	65	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_32	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKXY010000001.1 Salmonella enterica strain PNUSAS395896 SAMN38017792-rid19971033.denovo.01, whole genome shotgun sequence	302267..302704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKXY010000026.1 Salmonella enterica strain PNUSAS395896 SAMN38017792-rid19971033.guided.17, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033139845.1_PDT001955891.1_genomic.fna	Salmonella_enterica	0.5215	472.894 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_117,sucA_16,thrA_603	2783	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_117	sucA	100	100	sucA_16	thrA	100	100	thrA_603	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.8	438/438	ABOKYB010000001.1 Salmonella enterica strain PNUSAS396089 SAMN38017774-rid19972063.denovo.01, whole genome shotgun sequence	485735..486172	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.8	438/438	ABOKYB010000024.1 Salmonella enterica strain PNUSAS396089 SAMN38017774-rid19972063.guided.17, whole genome shotgun sequence	26639..27076	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKYB010000002.1	498938..499807	99.54	870	0						
GCA_033139865.1_PDT001955889.1_genomic.fna	Salmonella_enterica	0.5219	334.124 KB	6	aroC_82,dnaN_38,hemD_26,hisD_12,purE_115,sucA_78,thrA_70	329	7:b:l,w	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_82	dnaN	100	100	dnaN_38	hemD	100	100	hemD_26	hisD	100	100	hisD_12	purE	100	100	purE_115	sucA	100	100	sucA_78	thrA	100	100	thrA_70	7	b	l,w	Salmonella enterica subspecies enterica (subspecies I)	Ohio		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKYA010000012.1 Salmonella enterica strain PNUSAS396083 SAMN38017773-rid19972053.denovo.12, whole genome shotgun sequence	105019..105456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKYA010000037.1 Salmonella enterica strain PNUSAS396083 SAMN38017773-rid19972053.guided.25, whole genome shotgun sequence	15858..16295	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOKYA010000027.1 Salmonella enterica strain PNUSAS396083 SAMN38017773-rid19972053.denovo.29, whole genome shotgun sequence	557..687																																																																	
GCA_033139885.1_PDT001955890.1_genomic.fna	Salmonella_enterica	0.5214	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKXX010000001.1 Salmonella enterica strain PNUSAS396084 SAMN38017776-rid19971013.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKXX010000026.1 Salmonella enterica strain PNUSAS396084 SAMN38017776-rid19971013.guided.14, whole genome shotgun sequence	24944..25381	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKXX010000015.1 Salmonella enterica strain PNUSAS396084 SAMN38017776-rid19971013.denovo.18, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOKXX010000012.1 Salmonella enterica strain PNUSAS396084 SAMN38017776-rid19971013.denovo.12, whole genome shotgun sequence	37108..37369																																																avrA	ABOKXX010000002.1	553636..554505	99.54	870	0						
GCA_033139905.1_PDT001955888.1_genomic.fna	Salmonella_enterica	0.5189	263.534 KB	8	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	6	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,blaCTX-M-15,blaCTX-M-15,fosA7,fosA7,qnrS13,qnrS13,tet(A),tet(A)	2	gyrA_p.S83F,parC_p.T57S	2	ColpVC,IncI1-I(Alpha)	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKYD010000002.1 Salmonella enterica strain PNUSAS396091 SAMN38017779-rid19971003.denovo.02, whole genome shotgun sequence	375806..376243	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOKYD010000032.1 Salmonella enterica strain PNUSAS396091 SAMN38017779-rid19971003.denovo.34, whole genome shotgun sequence	134..949	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	aac(6')-Iaa	97.95	438/438	ABOKYD010000050.1 Salmonella enterica strain PNUSAS396091 SAMN38017779-rid19971003.guided.24, whole genome shotgun sequence	40012..40449	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOKYD010000057.1 Salmonella enterica strain PNUSAS396091 SAMN38017779-rid19971003.guided.46, whole genome shotgun sequence	126..941	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin, Neomycin	V00359	blaCTX-M-15	100	876/876	ABOKYD010000003.1 Salmonella enterica strain PNUSAS396091 SAMN38017779-rid19971003.denovo.03, whole genome shotgun sequence	2636..3511	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	blaCTX-M-15	100	876/876	ABOKYD010000052.1 Salmonella enterica strain PNUSAS396091 SAMN38017779-rid19971003.guided.35, whole genome shotgun sequence	11171..12046	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	AY044436	fosA7	97.16	423/423	ABOKYD010000005.1 Salmonella enterica strain PNUSAS396091 SAMN38017779-rid19971003.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOKYD010000055.1 Salmonella enterica strain PNUSAS396091 SAMN38017779-rid19971003.guided.39, whole genome shotgun sequence	1024..1446	Fosfomycin	LAPJ01000014	qnrS13	100	657/657	ABOKYD010000020.1 Salmonella enterica strain PNUSAS396091 SAMN38017779-rid19971003.denovo.20, whole genome shotgun sequence	83812..84468	Ciprofloxacin	LUYD01000008	qnrS13	100	657/657	ABOKYD010000056.1 Salmonella enterica strain PNUSAS396091 SAMN38017779-rid19971003.guided.43, whole genome shotgun sequence	1054..1710	Ciprofloxacin	LUYD01000008	tet(A)	99.92	1200/1200	ABOKYD010000020.1 Salmonella enterica strain PNUSAS396091 SAMN38017779-rid19971003.denovo.20, whole genome shotgun sequence	77958..79157	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOKYD010000054.1 Salmonella enterica strain PNUSAS396091 SAMN38017779-rid19971003.guided.37, whole genome shotgun sequence	3504..4703	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																				gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	ColpVC	97.41	193 / 193	ABOKYD010000038.1 Salmonella enterica strain PNUSAS396091 SAMN38017779-rid19971003.denovo.45, whole genome shotgun sequence	279..471	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOKYD010000032.1 Salmonella enterica strain PNUSAS396091 SAMN38017779-rid19971003.denovo.34, whole genome shotgun sequence	6846..6987																																																avrA	ABOKYD010000001.1	139991..140860	99.195	870	0						
GCA_033139945.1_PDT001955887.1_genomic.fna	Salmonella_enterica	0.5213	271.145 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,qnrB19,qnrB19,sul2,sul2,tet(B),tet(B)	0		2	Col(pHAD28),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKYE010000001.1 Salmonella enterica strain PNUSAS396085 SAMN38017775-rid19972693.denovo.01, whole genome shotgun sequence	581409..581846	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKYE010000034.1 Salmonella enterica strain PNUSAS396085 SAMN38017775-rid19972693.denovo.39, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKYE010000034.1 Salmonella enterica strain PNUSAS396085 SAMN38017775-rid19972693.denovo.39, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOKYE010000058.1 Salmonella enterica strain PNUSAS396085 SAMN38017775-rid19972693.guided.24, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKYE010000062.1 Salmonella enterica strain PNUSAS396085 SAMN38017775-rid19972693.guided.38, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKYE010000062.1 Salmonella enterica strain PNUSAS396085 SAMN38017775-rid19972693.guided.38, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	blaTEM-1B	100	861/861	ABOKYE010000042.1 Salmonella enterica strain PNUSAS396085 SAMN38017775-rid19972693.denovo.48, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOKYE010000063.1 Salmonella enterica strain PNUSAS396085 SAMN38017775-rid19972693.guided.47, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	qnrB19	100	645/645	ABOKYE010000038.1 Salmonella enterica strain PNUSAS396085 SAMN38017775-rid19972693.denovo.43, whole genome shotgun sequence	2178..2822	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOKYE010000064.1 Salmonella enterica strain PNUSAS396085 SAMN38017775-rid19972693.guided.49, whole genome shotgun sequence	102..746	Ciprofloxacin	EU432277	sul2	100	816/816	ABOKYE010000034.1 Salmonella enterica strain PNUSAS396085 SAMN38017775-rid19972693.denovo.39, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOKYE010000062.1 Salmonella enterica strain PNUSAS396085 SAMN38017775-rid19972693.guided.38, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOKYE010000029.1 Salmonella enterica strain PNUSAS396085 SAMN38017775-rid19972693.denovo.32, whole genome shotgun sequence	10140..11345	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOKYE010000061.1 Salmonella enterica strain PNUSAS396085 SAMN38017775-rid19972693.guided.33, whole genome shotgun sequence	10181..11386	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	100	131 / 131	ABOKYE010000038.1 Salmonella enterica strain PNUSAS396085 SAMN38017775-rid19972693.denovo.43, whole genome shotgun sequence	1522..1652	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOKYE010000014.1 Salmonella enterica strain PNUSAS396085 SAMN38017775-rid19972693.denovo.14, whole genome shotgun sequence	2749..2890																																																avrA	ABOKYE010000002.1	540741..541610	99.885	870	0						
GCA_033139965.1_PDT001955884.1_genomic.fna	Salmonella_enterica	0.5219	215.006 KB	9	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOKYK010000002.1 Salmonella enterica strain PNUSAS396086 SAMN38017777-rid19972033.denovo.02, whole genome shotgun sequence	37881..38318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOKYK010000055.1 Salmonella enterica strain PNUSAS396086 SAMN38017777-rid19972033.guided.31, whole genome shotgun sequence	12401..12838	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKYK010000007.1	43271..44140	99.77	870	0						
GCA_033139985.1_PDT001955885.1_genomic.fna	Salmonella_enterica	0.5203	388.425 KB	5	aroC_11,dnaN_10,hemD_25,hisD_13,purE_10,sucA_35,thrA_4	126	4:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_25	hisD	100	100	hisD_13	purE	100	100	purE_10	sucA	100	100	sucA_35	thrA	100	100	thrA_4	4	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Sandiego		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOKYI010000001.1 Salmonella enterica strain PNUSAS396088 SAMN38017780-rid19970993.denovo.01, whole genome shotgun sequence	260688..261125	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOKYI010000098.1 Salmonella enterica strain PNUSAS396088 SAMN38017780-rid19970993.guided.27, whole genome shotgun sequence	16427..16864	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.82	643 / 643	ABOKYI010000025.1 Salmonella enterica strain PNUSAS396088 SAMN38017780-rid19970993.denovo.25, whole genome shotgun sequence	19377..20019																																																																	
GCA_033140025.1_PDT001955882.1_genomic.fna	Salmonella_enterica	0.5218	228.071 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKYH010000001.1 Salmonella enterica strain PNUSAS396093 SAMN38017772-rid19972023.denovo.01, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKYH010000062.1 Salmonella enterica strain PNUSAS396093 SAMN38017772-rid19972023.guided.41, whole genome shotgun sequence	5912..6349	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOKYH010000018.1 Salmonella enterica strain PNUSAS396093 SAMN38017772-rid19972023.denovo.18, whole genome shotgun sequence	48446..49088	enterobacteriales	IncFII(S)	100	262 / 262	ABOKYH010000018.1 Salmonella enterica strain PNUSAS396093 SAMN38017772-rid19972023.denovo.18, whole genome shotgun sequence	64173..64434																																																avrA	ABOKYH010000006.1	95476..96344	100	869	0						
GCA_033140045.1_PDT001955881.1_genomic.fna	Salmonella_enterica	0.521	191.426 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKYJ010000001.1 Salmonella enterica strain PNUSAS396092 SAMN38017771-rid19972833.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKYJ010000056.1 Salmonella enterica strain PNUSAS396092 SAMN38017771-rid19972833.guided.33, whole genome shotgun sequence	12446..12883	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	98.03	152 / 154	ABOKYJ010000041.1 Salmonella enterica strain PNUSAS396092 SAMN38017771-rid19972833.denovo.44, whole genome shotgun sequence	967..1118																																																						avrA	ABOKYJ010000011.1	94133..95001	99.77	870	0						
GCA_033140065.1_PDT001955880.1_genomic.fna	Salmonella_enterica	0.5201	656.783 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	parC_p.T57S	2	IncC,IncFII(p96A)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKYM010000001.1 Salmonella enterica strain PNUSAS396087 SAMN38017770-rid19970973.denovo.01, whole genome shotgun sequence	645016..645453	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKYM010000014.1 Salmonella enterica strain PNUSAS396087 SAMN38017770-rid19970973.denovo.15, whole genome shotgun sequence	33294..34130	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKYM010000014.1 Salmonella enterica strain PNUSAS396087 SAMN38017770-rid19970973.denovo.15, whole genome shotgun sequence	32491..33294	Streptomycin	AF321551	aac(6')-Iaa	99.54	438/438	ABOKYM010000034.1 Salmonella enterica strain PNUSAS396087 SAMN38017770-rid19970973.guided.09, whole genome shotgun sequence	42443..42880	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKYM010000035.1 Salmonella enterica strain PNUSAS396087 SAMN38017770-rid19970973.guided.16, whole genome shotgun sequence	2542..3378	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOKYM010000035.1 Salmonella enterica strain PNUSAS396087 SAMN38017770-rid19970973.guided.16, whole genome shotgun sequence	3378..4181	Streptomycin	AF321551	blaCMY-2	100	1146/1146	ABOKYM010000014.1 Salmonella enterica strain PNUSAS396087 SAMN38017770-rid19970973.denovo.15, whole genome shotgun sequence	2126..3271	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOKYM010000035.1 Salmonella enterica strain PNUSAS396087 SAMN38017770-rid19970973.guided.16, whole genome shotgun sequence	33401..34546	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.27	1214/1215	ABOKYM010000014.1 Salmonella enterica strain PNUSAS396087 SAMN38017770-rid19970973.denovo.15, whole genome shotgun sequence	37266..38479	Chloramphenicol, Florfenicol	AF118107	floR	98.27	1214/1215	ABOKYM010000038.1 Salmonella enterica strain PNUSAS396087 SAMN38017770-rid19970973.guided.26, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOKYM010000014.1 Salmonella enterica strain PNUSAS396087 SAMN38017770-rid19970973.denovo.15, whole genome shotgun sequence	31615..32430	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOKYM010000035.1 Salmonella enterica strain PNUSAS396087 SAMN38017770-rid19970973.guided.16, whole genome shotgun sequence	4242..5057	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOKYM010000014.1 Salmonella enterica strain PNUSAS396087 SAMN38017770-rid19970973.denovo.15, whole genome shotgun sequence	35391..36665	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOKYM010000035.1 Salmonella enterica strain PNUSAS396087 SAMN38017770-rid19970973.guided.16, whole genome shotgun sequence	7..1281	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncC	100	417 / 417	ABOKYM010000012.1 Salmonella enterica strain PNUSAS396087 SAMN38017770-rid19970973.denovo.13, whole genome shotgun sequence	17493..17909	enterobacteriales	IncFII(p96A)	99.81	534 / 534	ABOKYM010000013.1 Salmonella enterica strain PNUSAS396087 SAMN38017770-rid19970973.denovo.14, whole genome shotgun sequence	15755..16288																																																avrA	ABOKYM010000003.1	561918..562788	99.656	871	0						
GCA_033140085.1_PDT001955879.1_genomic.fna	Salmonella_enterica	0.5213	376.351 KB	6	aroC_10,dnaN_60,hemD_58,hisD_66,purE_6,sucA_65,thrA_16	155	3,10:l,v:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_60	hemD	100	100	hemD_58	hisD	100	100	hisD_66	purE	100	100	purE_6	sucA	100	100	sucA_65	thrA	100	100	thrA_16	3,10	l,v	1,6	Salmonella enterica subspecies enterica (subspecies I)	London		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKYL010000001.1 Salmonella enterica strain PNUSAS396036 SAMN38017379-rid19972013.denovo.01, whole genome shotgun sequence	378841..379278	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKYL010000030.1 Salmonella enterica strain PNUSAS396036 SAMN38017379-rid19972013.guided.25, whole genome shotgun sequence	4012..4449	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKYL010000011.1	36961..37830	99.425	870	0						
GCA_033140105.1_PDT001955877.1_genomic.fna	Salmonella_enterica	0.5213	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		3	ColRNAI,IncFIB(S),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKYO010000002.1 Salmonella enterica strain PNUSAS396037 SAMN38017381-rid19972683.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKYO010000054.1 Salmonella enterica strain PNUSAS396037 SAMN38017381-rid19972683.guided.31, whole genome shotgun sequence	3216..3653	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABOKYO010000039.1 Salmonella enterica strain PNUSAS396037 SAMN38017381-rid19972683.denovo.42, whole genome shotgun sequence	4021..4151	enterobacteriales	IncFIB(S)	100	643 / 643	ABOKYO010000033.1 Salmonella enterica strain PNUSAS396037 SAMN38017381-rid19972683.denovo.36, whole genome shotgun sequence	1115..1757		enterobacteriales	IncI1-I(Alpha)	98.59	142 / 142	ABOKYO010000030.1 Salmonella enterica strain PNUSAS396037 SAMN38017381-rid19972683.denovo.30, whole genome shotgun sequence	20233..20374																																									avrA	ABOKYO010000003.1	209222..210090	100	869	0						
GCA_033140125.1_PDT001955878.1_genomic.fna	Salmonella_enterica	0.5214	302.893 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87N	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKYS010000001.1 Salmonella enterica strain PNUSAS396035 SAMN38017382-rid19970963.denovo.01, whole genome shotgun sequence	479569..480006	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKYS010000045.1 Salmonella enterica strain PNUSAS396035 SAMN38017382-rid19970963.guided.23, whole genome shotgun sequence	18112..18549	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncFIB(S)	100	643 / 643	ABOKYS010000016.1 Salmonella enterica strain PNUSAS396035 SAMN38017382-rid19970963.denovo.16, whole genome shotgun sequence	44674..45316	enterobacteriales	IncFII(S)	100	262 / 262	ABOKYS010000016.1 Salmonella enterica strain PNUSAS396035 SAMN38017382-rid19970963.denovo.16, whole genome shotgun sequence	60401..60662																																																avrA	ABOKYS010000004.1	175008..175877	99.885	870	0						
GCA_033140145.1_PDT001955876.1_genomic.fna	Salmonella_enterica	0.5221	406.451 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	ABOKYN010000001.1 Salmonella enterica strain PNUSAS396040 SAMN38017378-rid19972003.denovo.01, whole genome shotgun sequence	745545..745982	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABOKYN010000025.1 Salmonella enterica strain PNUSAS396040 SAMN38017378-rid19972003.guided.17, whole genome shotgun sequence	789..1226	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKYN010000013.1 Salmonella enterica strain PNUSAS396040 SAMN38017378-rid19972003.denovo.13, whole genome shotgun sequence	47171..47813	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOKYN010000018.1 Salmonella enterica strain PNUSAS396040 SAMN38017378-rid19972003.denovo.20, whole genome shotgun sequence	9289..9548																																																avrA	ABOKYN010000002.1	505008..505877	99.54	870	0						
GCA_033140155.1_PDT001955874.1_genomic.fna	Salmonella_enterica	0.5212	405.99 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKYP010000001.1 Salmonella enterica strain PNUSAS396042 SAMN38017375-rid19971993.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKYP010000026.1 Salmonella enterica strain PNUSAS396042 SAMN38017375-rid19971993.guided.20, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKYP010000016.1 Salmonella enterica strain PNUSAS396042 SAMN38017375-rid19971993.denovo.18, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOKYP010000018.1 Salmonella enterica strain PNUSAS396042 SAMN38017375-rid19971993.denovo.21, whole genome shotgun sequence	3403..3664																																																avrA	ABOKYP010000002.1	553635..554504	99.54	870	0						
GCA_033140185.1_PDT001955875.1_genomic.fna	Salmonella_enterica	0.5213	406.452 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKYQ010000001.1 Salmonella enterica strain PNUSAS396038 SAMN38017380-rid19972673.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKYQ010000029.1 Salmonella enterica strain PNUSAS396038 SAMN38017380-rid19972673.guided.21, whole genome shotgun sequence	4008..4445	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKYQ010000019.1 Salmonella enterica strain PNUSAS396038 SAMN38017380-rid19972673.denovo.20, whole genome shotgun sequence	6831..7473	enterobacteriales	IncFII(S)	100	262 / 262	ABOKYQ010000020.1 Salmonella enterica strain PNUSAS396038 SAMN38017380-rid19972673.denovo.22, whole genome shotgun sequence	3392..3653																																																avrA	ABOKYQ010000002.1	585348..586217	99.54	870	0						
GCA_033140205.1_PDT001955873.1_genomic.fna	Salmonella_enterica	0.5225	687.726 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncP6	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKYR010000001.1 Salmonella enterica strain PNUSAS396039 SAMN38017377-rid19970953.denovo.01, whole genome shotgun sequence	651305..651742	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKYR010000024.1 Salmonella enterica strain PNUSAS396039 SAMN38017377-rid19970953.guided.18, whole genome shotgun sequence	1648..2085	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncP6	98.88	806 / 806	ABOKYR010000016.1 Salmonella enterica strain PNUSAS396039 SAMN38017377-rid19970953.denovo.16, whole genome shotgun sequence	19696..20501																																																						avrA	ABOKYR010000003.1	546810..547678	99.655	870	0						
GCA_033140225.1_PDT001955872.1_genomic.fna	Salmonella_enterica	0.5214	396.592 KB	5	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKYT010000011.1 Salmonella enterica strain PNUSAS396041 SAMN38017376-rid19971983.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKYT010000037.1 Salmonella enterica strain PNUSAS396041 SAMN38017376-rid19971983.guided.30, whole genome shotgun sequence	568..1005	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOKYT010000017.1 Salmonella enterica strain PNUSAS396041 SAMN38017376-rid19971983.denovo.17, whole genome shotgun sequence	6311..6844																																																						avrA	ABOKYT010000003.1	39478..40344	98.966	870	0						
GCA_033140245.1_PDT001955871.1_genomic.fna	Salmonella_enterica	0.5217	191.55 KB	9	aroC_2,dnaN_31,hemD_10,hisD_62,purE_14,sucA_19,thrA_34	2119	7:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_31	hemD	100	100	hemD_10	hisD	100	100	hisD_62	purE	100	100	purE_14	sucA	100	100	sucA_19	thrA	100	100	thrA_34	7	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	Norwich		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKYV010000018.1 Salmonella enterica strain PNUSAS396065 SAMN38017340-rid19971973.denovo.18, whole genome shotgun sequence	78461..78898	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKYV010000075.1 Salmonella enterica strain PNUSAS396065 SAMN38017340-rid19971973.guided.52, whole genome shotgun sequence	2201..2638	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKYV010000002.1	39349..40217	99.31	870	0						
GCA_033140265.1_PDT001955869.1_genomic.fna	Salmonella_enterica	0.521	410.224 KB	5	aroC_10,dnaN_7,hemD_21,hisD_12,purE_15,sucA_12,thrA_12	46	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOKYY010000001.1 Salmonella enterica strain PNUSAS396067 SAMN38017338-rid19970943.denovo.01, whole genome shotgun sequence	266738..267175	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOKYY010000029.1 Salmonella enterica strain PNUSAS396067 SAMN38017338-rid19970943.guided.20, whole genome shotgun sequence	15108..15545	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKYY010000002.1	500141..501010	99.54	870	0						
GCA_033140285.1_PDT001955868.1_genomic.fna	Salmonella_enterica	0.5216	409.274 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOKYX010000001.1 Salmonella enterica strain PNUSAS396064 SAMN38017341-rid19970933.denovo.01, whole genome shotgun sequence	558328..558765	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOKYX010000041.1 Salmonella enterica strain PNUSAS396064 SAMN38017341-rid19970933.guided.20, whole genome shotgun sequence	5364..5801	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKYX010000016.1	39417..40285	99.195	870	0						
GCA_033140305.1_PDT001955870.1_genomic.fna	Salmonella_enterica	0.5227	303.194 KB	6	aroC_46,dnaN_44,hemD_46,hisD_46,purE_38,sucA_18,thrA_34	88	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_44	hemD	100	100	hemD_46	hisD	100	100	hisD_46	purE	100	100	purE_38	sucA	100	100	sucA_18	thrA	100	100	thrA_34	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOKYZ010000006.1 Salmonella enterica strain PNUSAS396066 SAMN38017339-rid19971963.denovo.06, whole genome shotgun sequence	144913..145350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOKYZ010000037.1 Salmonella enterica strain PNUSAS396066 SAMN38017339-rid19971963.guided.24, whole genome shotgun sequence	29610..30047	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKYZ010000001.1	509466..510335	99.31	870	0						
GCA_033140325.1_PDT001955867.1_genomic.fna	Salmonella_enterica	0.5219	328.216 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKZA010000001.1 Salmonella enterica strain PNUSAS396063 SAMN38017279-rid19971953.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKZA010000046.1 Salmonella enterica strain PNUSAS396063 SAMN38017279-rid19971953.guided.20, whole genome shotgun sequence	1816..2253	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKZA010000002.1	149551..150420	99.655	870	0						
GCA_033140345.1_PDT001955866.1_genomic.fna	Salmonella_enterica	0.5213	350.032 KB	5	aroC_119,dnaN_10,hemD_17,hisD_42,purE_12,sucA_13,thrA_4	321	3,10:e,h:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_119	dnaN	100	100	dnaN_10	hemD	100	100	hemD_17	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	3,10	e,h	1,5	Salmonella enterica subspecies enterica (subspecies I)	Muenster		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKYW010000001.1 Salmonella enterica strain PNUSAS396068 SAMN38017280-rid19971943.denovo.01, whole genome shotgun sequence	501741..502178	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKYW010000029.1 Salmonella enterica strain PNUSAS396068 SAMN38017280-rid19971943.guided.22, whole genome shotgun sequence	3847..4284	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033140365.1_PDT001955864.1_genomic.fna	Salmonella_enterica	0.5211	225.555 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKZB010000002.1 Salmonella enterica strain PNUSAS395998 SAMN38016631-rid19971923.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKZB010000056.1 Salmonella enterica strain PNUSAS395998 SAMN38016631-rid19971923.guided.36, whole genome shotgun sequence	9729..10166	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOKZB010000004.1	175553..176421	100	869	0						
GCA_033140405.1_PDT001955860.1_genomic.fna	Salmonella_enterica	0.5218	419.843 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOKZF010000002.1 Salmonella enterica strain PNUSAS395996 SAMN38016629-rid19971893.denovo.02, whole genome shotgun sequence	486957..487394	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOKZF010000027.1 Salmonella enterica strain PNUSAS395996 SAMN38016629-rid19971893.guided.22, whole genome shotgun sequence	6323..6760	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKZF010000006.1	94360..95228	99.425	870	0						
GCA_033140425.1_PDT001955863.1_genomic.fna	Salmonella_enterica	0.5213	379.477 KB	4	aroC_172,dnaN_166,hemD_10,hisD_122,purE_61,sucA_90,thrA_86	555	8:i:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_172	dnaN	100	100	dnaN_166	hemD	100	100	hemD_10	hisD	100	100	hisD_122	purE	100	100	purE_61	sucA	100	100	sucA_90	thrA	100	100	thrA_86	8	i	1,5	Salmonella enterica subspecies enterica (subspecies I)	Takoradi or Bargny	The predicted serotypes share the same general formula: 8:i:1,5 and can be differentiated by additional analysis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKZC010000001.1 Salmonella enterica strain PNUSAS396000 SAMN38016632-rid19970923.denovo.01, whole genome shotgun sequence	803108..803545	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKZC010000030.1 Salmonella enterica strain PNUSAS396000 SAMN38016632-rid19970923.guided.23, whole genome shotgun sequence	1753..2190	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKZC010000003.1	150746..151615	99.08	870	0						
GCA_033140445.1_PDT001955861.1_genomic.fna	Salmonella_enterica	0.521	489.495 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKZE010000001.1 Salmonella enterica strain PNUSAS395995 SAMN38016634-rid19971903.denovo.01, whole genome shotgun sequence	774553..774990	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKZE010000032.1 Salmonella enterica strain PNUSAS395995 SAMN38016634-rid19971903.guided.26, whole genome shotgun sequence	2397..2834	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKZE010000020.1 Salmonella enterica strain PNUSAS395995 SAMN38016634-rid19971903.denovo.21, whole genome shotgun sequence	6814..7456	enterobacteriales	IncFII(S)	100	262 / 262	ABOKZE010000022.1 Salmonella enterica strain PNUSAS395995 SAMN38016634-rid19971903.denovo.24, whole genome shotgun sequence	3415..3676																																																avrA	ABOKZE010000007.1	175196..176065	99.54	870	0						
GCA_033140465.1_PDT001955862.1_genomic.fna	Salmonella_enterica	0.5226	257.966 KB	5	aroC_543,dnaN_69,hemD_101,hisD_12,purE_370,sucA_130,thrA_347	2553	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_543	dnaN	100	100	dnaN_69	hemD	100	100	hemD_101	hisD	100	100	hisD_12	purE	100	100	purE_370	sucA	100	100	sucA_130	thrA	100	100	thrA_347	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOKZD010000001.1 Salmonella enterica strain PNUSAS395997 SAMN38016633-rid19971913.denovo.01, whole genome shotgun sequence	516218..516655	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOKZD010000030.1 Salmonella enterica strain PNUSAS395997 SAMN38016633-rid19971913.guided.26, whole genome shotgun sequence	1069..1506	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKZD010000002.1	514148..515017	99.31	870	0						
GCA_033140485.1_PDT001955859.1_genomic.fna	Salmonella_enterica	0.5211	175.443 KB	8	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKZH010000003.1 Salmonella enterica strain PNUSAS395999 SAMN38016630-rid19970913.denovo.03, whole genome shotgun sequence	74815..75252	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKZH010000045.1 Salmonella enterica strain PNUSAS395999 SAMN38016630-rid19970913.guided.41, whole genome shotgun sequence	2124..2561	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.76	643 / 643	ABOKZH010000031.1 Salmonella enterica strain PNUSAS395999 SAMN38016630-rid19970913.denovo.31, whole genome shotgun sequence	6815..7457	enterobacteriales	IncFII(S)	100	262 / 262	ABOKZH010000035.1 Salmonella enterica strain PNUSAS395999 SAMN38016630-rid19970913.denovo.36, whole genome shotgun sequence	3392..3653		enterobacteriales	IncX1	98.66	374 / 374	ABOKZH010000033.1 Salmonella enterica strain PNUSAS395999 SAMN38016630-rid19970913.denovo.33, whole genome shotgun sequence	4078..4451																																									avrA	ABOKZH010000007.1	140720..141589	99.54	870	0						
GCA_033142855.1_PDT001962800.1_genomic.fna	Salmonella_enterica	0.5213	489.659 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKZK010000001.1 Salmonella enterica strain PNUSAS396781 SAMN38042470-rid20023603.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKZK010000027.1 Salmonella enterica strain PNUSAS396781 SAMN38042470-rid20023603.guided.17, whole genome shotgun sequence	7239..7676	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKZK010000012.1 Salmonella enterica strain PNUSAS396781 SAMN38042470-rid20023603.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOKZK010000017.1 Salmonella enterica strain PNUSAS396781 SAMN38042470-rid20023603.denovo.19, whole genome shotgun sequence	3392..3653																																																avrA	ABOKZK010000002.1	553087..553956	99.54	870	0						
GCA_033142875.1_PDT001962799.1_genomic.fna	Salmonella_enterica	0.5206	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKZI010000001.1 Salmonella enterica strain PNUSAS396777 SAMN38042475-rid20022433.denovo.01, whole genome shotgun sequence	774423..774860	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKZI010000024.1 Salmonella enterica strain PNUSAS396777 SAMN38042475-rid20022433.guided.17, whole genome shotgun sequence	5296..5733	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKZI010000016.1 Salmonella enterica strain PNUSAS396777 SAMN38042475-rid20022433.denovo.16, whole genome shotgun sequence	15050..15692	enterobacteriales	IncFII(S)	100	262 / 262	ABOKZI010000018.1 Salmonella enterica strain PNUSAS396777 SAMN38042475-rid20022433.denovo.20, whole genome shotgun sequence	3380..3641		enterobacteriales	IncX1	98.93	374 / 374	ABOKZI010000012.1 Salmonella enterica strain PNUSAS396777 SAMN38042475-rid20022433.denovo.12, whole genome shotgun sequence	32011..32384																																									avrA	ABOKZI010000002.1	553479..554348	99.54	870	0						
GCA_033142895.1_PDT001962797.1_genomic.fna	Salmonella_enterica	0.5197	288.744 KB	6	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	4	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKZP010000001.1 Salmonella enterica strain PNUSAS396755 SAMN38042456-rid20023583.denovo.01, whole genome shotgun sequence	486024..486461	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKZP010000058.1 Salmonella enterica strain PNUSAS396755 SAMN38042456-rid20023583.guided.42, whole genome shotgun sequence	1393..1830	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOKZP010000009.1 Salmonella enterica strain PNUSAS396755 SAMN38042456-rid20023583.denovo.09, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOKZP010000059.1 Salmonella enterica strain PNUSAS396755 SAMN38042456-rid20023583.guided.43, whole genome shotgun sequence	445..867	Fosfomycin	LAPJ01000014	sul2	100	816/816	ABOKZP010000036.1 Salmonella enterica strain PNUSAS396755 SAMN38042456-rid20023583.denovo.36, whole genome shotgun sequence	2647..3462	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOKZP010000061.1 Salmonella enterica strain PNUSAS396755 SAMN38042456-rid20023583.guided.48, whole genome shotgun sequence	1590..2405	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOKZP010000038.1 Salmonella enterica strain PNUSAS396755 SAMN38042456-rid20023583.denovo.40, whole genome shotgun sequence	1203..2408	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOKZP010000060.1 Salmonella enterica strain PNUSAS396755 SAMN38042456-rid20023583.guided.45, whole genome shotgun sequence	710..1915	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKZP010000017.1	64444..65313	99.195	870	0						
GCA_033142905.1_PDT001962798.1_genomic.fna	Salmonella_enterica	0.5231	397.893 KB	4	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOKZL010000001.1 Salmonella enterica strain PNUSAS396776 SAMN38042465-rid20023593.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOKZL010000034.1 Salmonella enterica strain PNUSAS396776 SAMN38042465-rid20023593.guided.30, whole genome shotgun sequence	706..1143	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKZL010000002.1	149828..150697	99.655	870	0						
GCA_033142935.1_PDT001962801.1_genomic.fna	Salmonella_enterica	0.5214	266.637 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKZN010000002.1 Salmonella enterica strain PNUSAS396758 SAMN38042472-rid20023613.denovo.02, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKZN010000047.1 Salmonella enterica strain PNUSAS396758 SAMN38042472-rid20023613.guided.36, whole genome shotgun sequence	2404..2841	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABOKZN010000033.1 Salmonella enterica strain PNUSAS396758 SAMN38042472-rid20023613.denovo.34, whole genome shotgun sequence	483..636																																																						avrA	ABOKZN010000006.1	184453..185321	99.77	870	0						
GCA_033142955.1_PDT001962796.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKZO010000001.1 Salmonella enterica strain PNUSAS396767 SAMN38042448-rid20023573.denovo.01, whole genome shotgun sequence	774151..774588	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKZO010000025.1 Salmonella enterica strain PNUSAS396767 SAMN38042448-rid20023573.guided.19, whole genome shotgun sequence	1721..2158	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKZO010000012.1 Salmonella enterica strain PNUSAS396767 SAMN38042448-rid20023573.denovo.12, whole genome shotgun sequence	40536..41178	enterobacteriales	IncFII(S)	100	262 / 262	ABOKZO010000016.1 Salmonella enterica strain PNUSAS396767 SAMN38042448-rid20023573.denovo.18, whole genome shotgun sequence	3268..3529																																																avrA	ABOKZO010000002.1	553635..554504	99.54	870	0						
GCA_033142975.1_PDT001962795.1_genomic.fna	Salmonella_enterica	0.5224	556.748 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKZM010000001.1 Salmonella enterica strain PNUSAS396753 SAMN38042467-rid20023563.denovo.01, whole genome shotgun sequence	170408..170845	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKZM010000034.1 Salmonella enterica strain PNUSAS396753 SAMN38042467-rid20023563.guided.25, whole genome shotgun sequence	4934..5371	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033142995.1_PDT001962794.1_genomic.fna	Salmonella_enterica	0.5226	556.85 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKZJ010000001.1 Salmonella enterica strain PNUSAS396778 SAMN38042474-rid20023553.denovo.01, whole genome shotgun sequence	170334..170771	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKZJ010000031.1 Salmonella enterica strain PNUSAS396778 SAMN38042474-rid20023553.guided.24, whole genome shotgun sequence	3651..4088	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033143015.1_PDT001962793.1_genomic.fna	Salmonella_enterica	0.5213	489.917 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKZS010000001.1 Salmonella enterica strain PNUSAS396757 SAMN38042464-rid20023543.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKZS010000028.1 Salmonella enterica strain PNUSAS396757 SAMN38042464-rid20023543.guided.20, whole genome shotgun sequence	3742..4179	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKZS010000012.1 Salmonella enterica strain PNUSAS396757 SAMN38042464-rid20023543.denovo.12, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	ABOKZS010000016.1 Salmonella enterica strain PNUSAS396757 SAMN38042464-rid20023543.denovo.17, whole genome shotgun sequence	3392..3653																																																avrA	ABOKZS010000002.1	584148..585017	99.54	870	0						
GCA_033143025.1_PDT001962790.1_genomic.fna	Salmonella_enterica	0.5212	489.907 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKZQ010000001.1 Salmonella enterica strain PNUSAS396752 SAMN38042468-rid20023513.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKZQ010000023.1 Salmonella enterica strain PNUSAS396752 SAMN38042468-rid20023513.guided.15, whole genome shotgun sequence	5606..6043	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKZQ010000011.1 Salmonella enterica strain PNUSAS396752 SAMN38042468-rid20023513.denovo.11, whole genome shotgun sequence	48100..48742	enterobacteriales	IncFII(S)	100	262 / 262	ABOKZQ010000011.1 Salmonella enterica strain PNUSAS396752 SAMN38042468-rid20023513.denovo.11, whole genome shotgun sequence	3847..4108																																																avrA	ABOKZQ010000002.1	584142..585011	99.54	870	0						
GCA_033143045.1_PDT001962792.1_genomic.fna	Salmonella_enterica	0.5225	426.997 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKZR010000001.1 Salmonella enterica strain PNUSAS396756 SAMN38042454-rid20023533.denovo.01, whole genome shotgun sequence	170334..170771	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKZR010000030.1 Salmonella enterica strain PNUSAS396756 SAMN38042454-rid20023533.guided.24, whole genome shotgun sequence	1685..2122	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033143075.1_PDT001962788.1_genomic.fna	Salmonella_enterica	0.5218	452.891 KB	4	aroC_2,dnaN_2,hemD_43,hisD_7,purE_162,sucA_9,thrA_17	2026	7:l,v:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFII(S),IncFII(pCRY)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_2	hemD	100	100	hemD_43	hisD	100	100	hisD_7	purE	100	100	purE_162	sucA	100	100	sucA_9	thrA	100	100	thrA_17	7	l,v	1,5	Salmonella enterica subspecies enterica (subspecies I)	Irumu		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOKZU010000001.1 Salmonella enterica strain PNUSAS396762 SAMN38042463-rid20023503.denovo.01, whole genome shotgun sequence	332828..333265	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOKZU010000049.1 Salmonella enterica strain PNUSAS396762 SAMN38042463-rid20023503.guided.37, whole genome shotgun sequence	1165..1602	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(S)	93.87	261 / 262	ABOKZU010000012.1 Salmonella enterica strain PNUSAS396762 SAMN38042463-rid20023503.denovo.12, whole genome shotgun sequence	44317..44575	enterobacteriales	IncFII(pCRY)	94.1	593 / 593	ABOKZU010000015.1 Salmonella enterica strain PNUSAS396762 SAMN38042463-rid20023503.denovo.15, whole genome shotgun sequence	21147..21739																																																avrA	ABOKZU010000003.1	619811..620680	99.77	870	0						
GCA_033143095.1_PDT001962789.1_genomic.fna	Salmonella_enterica	0.5226	735.413 KB	2	aroC_2,dnaN_5,hemD_6,hisD_7,purE_5,sucA_7,thrA_12	33	8:z10:e,n,x	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(A),tet(A)	1	parC_p.T57S	1	ColpVC	aroC	100	100	aroC_2	dnaN	100	100	dnaN_5	hemD	100	100	hemD_6	hisD	100	100	hisD_7	purE	100	100	purE_5	sucA	100	100	sucA_7	thrA	100	100	thrA_12	8	z10	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Hadar		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKZT010000001.1 Salmonella enterica strain PNUSAS396754 SAMN38042476-rid20022423.denovo.01, whole genome shotgun sequence	1374582..1375019	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKZT010000015.1 Salmonella enterica strain PNUSAS396754 SAMN38042476-rid20022423.denovo.18, whole genome shotgun sequence	3239..4075	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOKZT010000015.1 Salmonella enterica strain PNUSAS396754 SAMN38042476-rid20022423.denovo.18, whole genome shotgun sequence	4075..4877	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOKZT010000015.1 Salmonella enterica strain PNUSAS396754 SAMN38042476-rid20022423.denovo.18, whole genome shotgun sequence	4075..4878	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOKZT010000015.1 Salmonella enterica strain PNUSAS396754 SAMN38042476-rid20022423.denovo.18, whole genome shotgun sequence	4075..4878	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOKZT010000015.1 Salmonella enterica strain PNUSAS396754 SAMN38042476-rid20022423.denovo.18, whole genome shotgun sequence	4075..4878	Streptomycin	AF321550	aac(6')-Iaa	99.54	438/438	ABOKZT010000029.1 Salmonella enterica strain PNUSAS396754 SAMN38042476-rid20022423.guided.17, whole genome shotgun sequence	2854..3291	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOKZT010000030.1 Salmonella enterica strain PNUSAS396754 SAMN38042476-rid20022423.guided.19, whole genome shotgun sequence	1682..2518	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOKZT010000030.1 Salmonella enterica strain PNUSAS396754 SAMN38042476-rid20022423.guided.19, whole genome shotgun sequence	880..1682	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOKZT010000030.1 Salmonella enterica strain PNUSAS396754 SAMN38042476-rid20022423.guided.19, whole genome shotgun sequence	879..1682	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOKZT010000030.1 Salmonella enterica strain PNUSAS396754 SAMN38042476-rid20022423.guided.19, whole genome shotgun sequence	879..1682	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOKZT010000030.1 Salmonella enterica strain PNUSAS396754 SAMN38042476-rid20022423.guided.19, whole genome shotgun sequence	879..1682	Streptomycin	AF321550	tet(A)	100	1200/1200	ABOKZT010000016.1 Salmonella enterica strain PNUSAS396754 SAMN38042476-rid20022423.denovo.21, whole genome shotgun sequence	2433..3632	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOKZT010000031.1 Salmonella enterica strain PNUSAS396754 SAMN38042476-rid20022423.guided.20, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABOKZT010000020.1 Salmonella enterica strain PNUSAS396754 SAMN38042476-rid20022423.denovo.25, whole genome shotgun sequence	805..997																																																						avrA	ABOKZT010000003.1	573274..574143	99.655	870	0						
GCA_033143115.1_PDT001962781.1_genomic.fna	Salmonella_enterica	0.5223	493.53 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOKZX010000001.1 Salmonella enterica strain PNUSAS396770 SAMN38042379-rid20023433.denovo.01, whole genome shotgun sequence	396198..396635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOKZX010000031.1 Salmonella enterica strain PNUSAS396770 SAMN38042379-rid20023433.guided.26, whole genome shotgun sequence	1742..2179	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033143135.1_PDT001962786.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKZW010000001.1 Salmonella enterica strain PNUSAS396774 SAMN38042453-rid20023483.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKZW010000023.1 Salmonella enterica strain PNUSAS396774 SAMN38042453-rid20023483.guided.15, whole genome shotgun sequence	3804..4241	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKZW010000012.1 Salmonella enterica strain PNUSAS396774 SAMN38042453-rid20023483.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOKZW010000016.1 Salmonella enterica strain PNUSAS396774 SAMN38042453-rid20023483.denovo.17, whole genome shotgun sequence	3417..3678																																																avrA	ABOKZW010000002.1	553636..554505	99.54	870	0						
GCA_033143155.1_PDT001962787.1_genomic.fna	Salmonella_enterica	0.5214	266.637 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOKZV010000002.1 Salmonella enterica strain PNUSAS396764 SAMN38042471-rid20023493.denovo.02, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOKZV010000049.1 Salmonella enterica strain PNUSAS396764 SAMN38042471-rid20023493.guided.34, whole genome shotgun sequence	5568..6005	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABOKZV010000034.1 Salmonella enterica strain PNUSAS396764 SAMN38042471-rid20023493.denovo.36, whole genome shotgun sequence	483..636																																																						avrA	ABOKZV010000006.1	184453..185321	99.77	870	0						
GCA_033143175.1_PDT001962776.1_genomic.fna	Salmonella_enterica	0.5217	762.364 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	2	aac(6')-Iaa,aac(6')-Iaa,qnrB19,qnrB19	0		1	Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOKZZ010000001.1 Salmonella enterica strain PNUSAS396769 SAMN38042383-rid20023393.denovo.01, whole genome shotgun sequence	482094..482531	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOKZZ010000025.1 Salmonella enterica strain PNUSAS396769 SAMN38042383-rid20023393.guided.19, whole genome shotgun sequence	787..1224	Amikacin, Tobramycin	NC_003197	qnrB19	100	645/645	ABOKZZ010000016.1 Salmonella enterica strain PNUSAS396769 SAMN38042383-rid20023393.denovo.18, whole genome shotgun sequence	349..993	Ciprofloxacin	EU432277	qnrB19	100	645/645	ABOKZZ010000024.1 Salmonella enterica strain PNUSAS396769 SAMN38042383-rid20023393.guided.17, whole genome shotgun sequence	4227..4871	Ciprofloxacin	EU432277																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	100	131 / 131	ABOKZZ010000016.1 Salmonella enterica strain PNUSAS396769 SAMN38042383-rid20023393.denovo.18, whole genome shotgun sequence	1519..1649	enterobacteriales	Col(pHAD28)	100	131 / 131	ABOKZZ010000024.1 Salmonella enterica strain PNUSAS396769 SAMN38042383-rid20023393.guided.17, whole genome shotgun sequence	3571..3701																																																avrA	ABOKZZ010000004.1	553715..554584	99.655	870	0						
GCA_033143195.1_PDT001962763.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOKZY010000001.1 Salmonella enterica strain PNUSAS396760 SAMN38042449-rid20023273.denovo.01, whole genome shotgun sequence	774151..774588	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOKZY010000022.1 Salmonella enterica strain PNUSAS396760 SAMN38042449-rid20023273.guided.13, whole genome shotgun sequence	29836..30273	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOKZY010000011.1 Salmonella enterica strain PNUSAS396760 SAMN38042449-rid20023273.denovo.12, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOKZY010000011.1 Salmonella enterica strain PNUSAS396760 SAMN38042449-rid20023273.denovo.12, whole genome shotgun sequence	5032..5293																																																avrA	ABOKZY010000002.1	553635..554504	99.54	870	0						
GCA_033143215.1_PDT001962749.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLAC010000001.1 Salmonella enterica strain PNUSAS396771 SAMN38042381-rid20022373.denovo.01, whole genome shotgun sequence	780560..780997	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLAC010000024.1 Salmonella enterica strain PNUSAS396771 SAMN38042381-rid20022373.guided.18, whole genome shotgun sequence	3189..3626	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLAC010000011.1 Salmonella enterica strain PNUSAS396771 SAMN38042381-rid20022373.denovo.11, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABOLAC010000015.1 Salmonella enterica strain PNUSAS396771 SAMN38042381-rid20022373.denovo.17, whole genome shotgun sequence	3375..3636																																																avrA	ABOLAC010000002.1	553635..554504	99.54	870	0						
GCA_033143235.1_PDT001962755.1_genomic.fna	Salmonella_enterica	0.5214	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLAB010000001.1 Salmonella enterica strain PNUSAS396759 SAMN38042450-rid20023213.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLAB010000026.1 Salmonella enterica strain PNUSAS396759 SAMN38042450-rid20023213.guided.25, whole genome shotgun sequence	221..658	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLAB010000012.1 Salmonella enterica strain PNUSAS396759 SAMN38042450-rid20023213.denovo.12, whole genome shotgun sequence	40580..41222	enterobacteriales	IncFII(S)	100	262 / 262	ABOLAB010000016.1 Salmonella enterica strain PNUSAS396759 SAMN38042450-rid20023213.denovo.18, whole genome shotgun sequence	3335..3596																																																avrA	ABOLAB010000002.1	553636..554505	99.54	870	0						
GCA_033143255.1_PDT001962758.1_genomic.fna	Salmonella_enterica	0.5212	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLAA010000001.1 Salmonella enterica strain PNUSAS396772 SAMN38042457-rid20023233.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLAA010000024.1 Salmonella enterica strain PNUSAS396772 SAMN38042457-rid20023233.guided.14, whole genome shotgun sequence	27643..28080	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLAA010000012.1 Salmonella enterica strain PNUSAS396772 SAMN38042457-rid20023233.denovo.13, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOLAA010000016.1 Salmonella enterica strain PNUSAS396772 SAMN38042457-rid20023233.denovo.19, whole genome shotgun sequence	3402..3663																																																avrA	ABOLAA010000002.1	553642..554511	99.54	870	0						
GCA_033143355.1_PDT001962777.1_genomic.fna	Salmonella_enterica	0.5211	266.637 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLAJ010000002.1 Salmonella enterica strain PNUSAS396779 SAMN38042385-rid20023403.denovo.02, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLAJ010000049.1 Salmonella enterica strain PNUSAS396779 SAMN38042385-rid20023403.guided.37, whole genome shotgun sequence	1812..2249	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABOLAJ010000034.1 Salmonella enterica strain PNUSAS396779 SAMN38042385-rid20023403.denovo.36, whole genome shotgun sequence	483..636																																																						avrA	ABOLAJ010000006.1	184086..184954	99.77	870	0						
GCA_033143455.1_PDT001962771.1_genomic.fna	Salmonella_enterica	0.5211	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLAO010000001.1 Salmonella enterica strain PNUSAS396761 SAMN38042451-rid20023343.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLAO010000023.1 Salmonella enterica strain PNUSAS396761 SAMN38042451-rid20023343.guided.15, whole genome shotgun sequence	17831..18268	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLAO010000011.1 Salmonella enterica strain PNUSAS396761 SAMN38042451-rid20023343.denovo.12, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABOLAO010000014.1 Salmonella enterica strain PNUSAS396761 SAMN38042451-rid20023343.denovo.17, whole genome shotgun sequence	3402..3663																																																avrA	ABOLAO010000002.1	553636..554505	99.54	870	0						
GCA_033143495.1_PDT001962770.1_genomic.fna	Salmonella_enterica	0.5214	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLAP010000001.1 Salmonella enterica strain PNUSAS396773 SAMN38042380-rid20023333.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLAP010000023.1 Salmonella enterica strain PNUSAS396773 SAMN38042380-rid20023333.guided.19, whole genome shotgun sequence	2480..2917	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLAP010000012.1 Salmonella enterica strain PNUSAS396773 SAMN38042380-rid20023333.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOLAP010000015.1 Salmonella enterica strain PNUSAS396773 SAMN38042380-rid20023333.denovo.16, whole genome shotgun sequence	3341..3602																																																avrA	ABOLAP010000002.1	553636..554505	99.54	870	0						
GCA_033143515.1_PDT001962768.1_genomic.fna	Salmonella_enterica	0.5215	489.887 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLAR010000001.1 Salmonella enterica strain PNUSAS396780 SAMN38042382-rid20023323.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLAR010000020.1 Salmonella enterica strain PNUSAS396780 SAMN38042382-rid20023323.guided.16, whole genome shotgun sequence	3325..3762	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLAR010000011.1 Salmonella enterica strain PNUSAS396780 SAMN38042382-rid20023323.denovo.11, whole genome shotgun sequence	40493..41135	enterobacteriales	IncFII(S)	100	262 / 262	ABOLAR010000014.1 Salmonella enterica strain PNUSAS396780 SAMN38042382-rid20023323.denovo.15, whole genome shotgun sequence	3385..3646																																																avrA	ABOLAR010000002.1	553635..554504	99.54	870	0						
GCA_033143575.1_PDT001962766.1_genomic.fna	Salmonella_enterica	0.521	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLAS010000001.1 Salmonella enterica strain PNUSAS396782 SAMN38042460-rid20023303.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLAS010000026.1 Salmonella enterica strain PNUSAS396782 SAMN38042460-rid20023303.guided.14, whole genome shotgun sequence	1591..2028	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLAS010000012.1 Salmonella enterica strain PNUSAS396782 SAMN38042460-rid20023303.denovo.13, whole genome shotgun sequence	40530..41172	enterobacteriales	IncFII(S)	100	262 / 262	ABOLAS010000016.1 Salmonella enterica strain PNUSAS396782 SAMN38042460-rid20023303.denovo.19, whole genome shotgun sequence	3348..3609																																																avrA	ABOLAS010000002.1	553636..554505	99.54	870	0						
GCA_033143635.1_PDT001962761.1_genomic.fna	Salmonella_enterica	0.5214	266.637 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLAX010000002.1 Salmonella enterica strain PNUSAS396765 SAMN38042461-rid20023253.denovo.02, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLAX010000047.1 Salmonella enterica strain PNUSAS396765 SAMN38042461-rid20023253.guided.35, whole genome shotgun sequence	738..1175	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABOLAX010000032.1 Salmonella enterica strain PNUSAS396765 SAMN38042461-rid20023253.denovo.33, whole genome shotgun sequence	483..636																																																						avrA	ABOLAX010000006.1	184086..184954	99.77	870	0						
GCA_033143675.1_PDT001962751.1_genomic.fna	Salmonella_enterica	0.5219	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLAZ010000001.1 Salmonella enterica strain PNUSAS396763 SAMN38042458-rid20023173.denovo.01, whole genome shotgun sequence	621265..621702	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLAZ010000030.1 Salmonella enterica strain PNUSAS396763 SAMN38042458-rid20023173.guided.20, whole genome shotgun sequence	2228..2665	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLAZ010000002.1	129911..130780	98.966	870	0						
GCA_033143735.1_PDT001962748.1_genomic.fna	Salmonella_enterica	0.5213	478.498 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLBA010000001.1 Salmonella enterica strain PNUSAS396783 SAMN38042388-rid20023153.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLBA010000024.1 Salmonella enterica strain PNUSAS396783 SAMN38042388-rid20023153.guided.17, whole genome shotgun sequence	8252..8689	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLBA010000012.1 Salmonella enterica strain PNUSAS396783 SAMN38042388-rid20023153.denovo.12, whole genome shotgun sequence	40531..41173	enterobacteriales	IncFII(S)	100	262 / 262	ABOLBA010000016.1 Salmonella enterica strain PNUSAS396783 SAMN38042388-rid20023153.denovo.19, whole genome shotgun sequence	3398..3659																																																avrA	ABOLBA010000002.1	553636..554505	99.54	870	0						
GCA_033143755.1_PDT001962746.1_genomic.fna	Salmonella_enterica	0.5224	407.373 KB	5	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	8:d:1,2	1	aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	8	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Muenchen		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOLBC010000010.1 Salmonella enterica strain PNUSAS396775 SAMN38042378-rid20023143.denovo.10, whole genome shotgun sequence	145303..145740	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOLBC010000022.1 Salmonella enterica strain PNUSAS396775 SAMN38042378-rid20023143.denovo.24, whole genome shotgun sequence	239..369																																																						avrA	ABOLBC010000008.1	140114..140983	99.425	870	0						
GCA_033143805.1_PDT001962739.1_genomic.fna	Salmonella_enterica	0.5213	696.002 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_167,sucA_15,thrA_4	3624	7:m,t:-	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_167	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLBE010000001.1 Salmonella enterica strain PNUSAS396766 SAMN38042377-rid20022333.denovo.01, whole genome shotgun sequence	648022..648459	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033143835.1_PDT001962737.1_genomic.fna	Salmonella_enterica	0.5214	266.637 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	Col156	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLBG010000002.1 Salmonella enterica strain PNUSAS396768 SAMN38042386-rid20022323.denovo.02, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLBG010000046.1 Salmonella enterica strain PNUSAS396768 SAMN38042386-rid20022323.guided.36, whole genome shotgun sequence	1492..1929	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	Col156	96.1	154 / 154	ABOLBG010000032.1 Salmonella enterica strain PNUSAS396768 SAMN38042386-rid20022323.denovo.34, whole genome shotgun sequence	483..636																																																						avrA	ABOLBG010000006.1	184453..185321	99.77	870	0						
GCA_033143995.1_PDT001962716.1_genomic.fna	Salmonella_enterica	0.5235	57.098 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	5	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,floR,floR,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLBO010000008.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314680 SAMN38042675-rid20022923.denovo.008, whole genome shotgun sequence	15516..15953	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOLBO010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314680 SAMN38042675-rid20022923.denovo.126, whole genome shotgun sequence	1116..2141	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOLBO010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314680 SAMN38042675-rid20022923.denovo.126, whole genome shotgun sequence	111..887	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOLBO010000158.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314680 SAMN38042675-rid20022923.guided.063, whole genome shotgun sequence	12442..12879	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOLBO010000159.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314680 SAMN38042675-rid20022923.guided.131, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOLBO010000159.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314680 SAMN38042675-rid20022923.guided.131, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	floR	98.19	1214/1215	ABOLBO010000117.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314680 SAMN38042675-rid20022923.denovo.120, whole genome shotgun sequence	1591..2804	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOLBO010000160.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314680 SAMN38042675-rid20022923.guided.139, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	dfrA14	100	474/474	ABOLBO010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314680 SAMN38042675-rid20022923.denovo.138, whole genome shotgun sequence	53..526	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																																																																									gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOLBO010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314680 SAMN38042675-rid20022923.denovo.124, whole genome shotgun sequence	2117..2676																																																						avrA	ABOLBO010000021.1	61413..62282	99.655	870	0						
GCA_033144035.1_PDT001962715.1_genomic.fna	Salmonella_enterica	0.5225	44.213 KB	36	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	-:i:1,2	5	aac(6')-Iaa,aph(3')-Ia,aac(6')-Iaa,aph(3')-Ia,blaCMY-2,blaCMY-2,sul2,sul2,tet(A),tet(A)	0		3	ColpVC,IncC,IncX1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	-	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:i:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLBQ010000074.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314682 SAMN38042677-rid20022913.denovo.074, whole genome shotgun sequence	11343..11780	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOLBQ010000191.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314682 SAMN38042677-rid20022913.denovo.197, whole genome shotgun sequence	137..952	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aac(6')-Iaa	100	438/438	ABOLBQ010000205.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314682 SAMN38042677-rid20022913.guided.075, whole genome shotgun sequence	15504..15941	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOLBQ010000210.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314682 SAMN38042677-rid20022913.guided.194, whole genome shotgun sequence	127..942	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	blaCMY-2	100	1146/1146	ABOLBQ010000100.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314682 SAMN38042677-rid20022913.denovo.102, whole genome shotgun sequence	1510..2655	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOLBQ010000208.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314682 SAMN38042677-rid20022913.guided.137, whole genome shotgun sequence	1541..2686	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	ABOLBQ010000128.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314682 SAMN38042677-rid20022913.denovo.131, whole genome shotgun sequence	6586..7401	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOLBQ010000209.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314682 SAMN38042677-rid20022913.guided.140, whole genome shotgun sequence	213..1028	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOLBQ010000128.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314682 SAMN38042677-rid20022913.denovo.131, whole genome shotgun sequence	3210..4409	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOLBQ010000209.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314682 SAMN38042677-rid20022913.guided.140, whole genome shotgun sequence	3205..4404	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	ColpVC	96.89	193 / 193	ABOLBQ010000168.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314682 SAMN38042677-rid20022913.denovo.173, whole genome shotgun sequence	1524..1716	enterobacteriales	IncC	100	417 / 417	ABOLBQ010000131.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314682 SAMN38042677-rid20022913.denovo.134, whole genome shotgun sequence	3283..3699		enterobacteriales	IncX1	98.66	374 / 374	ABOLBQ010000200.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS22314682 SAMN38042677-rid20022913.denovo.207, whole genome shotgun sequence	142..515																																									avrA	ABOLBQ010000031.1	43801..44670	99.885	870	0						
GCA_033144055.1_PDT001962713.1_genomic.fna	Salmonella_enterica	0.5221	57.793 KB	25	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLBP010000047.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314677 SAMN38042672-rid20022893.denovo.047, whole genome shotgun sequence	15436..15873	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLBP010000179.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314677 SAMN38042672-rid20022893.guided.075, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncX1	100	373 / 373	ABOLBP010000127.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314677 SAMN38042672-rid20022893.denovo.130, whole genome shotgun sequence	2690..3062																																																						avrA	ABOLBP010000040.1	39484..40353	99.655	870	0						
GCA_033144095.1_PDT001962710.1_genomic.fna	Salmonella_enterica	0.5223	65.611 KB	26	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLBT010000025.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314646 SAMN38042662-rid20022873.denovo.025, whole genome shotgun sequence	52321..52758	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOLBT010000106.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314646 SAMN38042662-rid20022873.denovo.107, whole genome shotgun sequence	6287..7089	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOLBT010000106.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314646 SAMN38042662-rid20022873.denovo.107, whole genome shotgun sequence	6287..7090	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOLBT010000106.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314646 SAMN38042662-rid20022873.denovo.107, whole genome shotgun sequence	6287..7090	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOLBT010000106.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314646 SAMN38042662-rid20022873.denovo.107, whole genome shotgun sequence	6287..7090	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOLBT010000106.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314646 SAMN38042662-rid20022873.denovo.107, whole genome shotgun sequence	5547..6287	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOLBT010000106.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314646 SAMN38042662-rid20022873.denovo.107, whole genome shotgun sequence	5547..6287	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABOLBT010000175.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314646 SAMN38042662-rid20022873.guided.069, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOLBT010000176.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314646 SAMN38042662-rid20022873.guided.112, whole genome shotgun sequence	499..1301	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOLBT010000176.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314646 SAMN38042662-rid20022873.guided.112, whole genome shotgun sequence	498..1301	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOLBT010000176.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314646 SAMN38042662-rid20022873.guided.112, whole genome shotgun sequence	498..1301	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOLBT010000176.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314646 SAMN38042662-rid20022873.guided.112, whole genome shotgun sequence	498..1301	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOLBT010000176.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314646 SAMN38042662-rid20022873.guided.112, whole genome shotgun sequence	1301..2041	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOLBT010000176.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314646 SAMN38042662-rid20022873.guided.112, whole genome shotgun sequence	1301..2041	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOLBT010000122.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314646 SAMN38042662-rid20022873.denovo.125, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABOLBT010000045.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314646 SAMN38042662-rid20022873.denovo.045, whole genome shotgun sequence	4947..5443																																																avrA	ABOLBT010000013.1	61525..62394	98.966	870	0						
GCA_033144115.1_PDT001962709.1_genomic.fna	Salmonella_enterica	0.5233	49.984 KB	32	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	10	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLBU010000066.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.denovo.066, whole genome shotgun sequence	14131..14568	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOLBU010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.denovo.083, whole genome shotgun sequence	18455..19246	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLBU010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.denovo.083, whole genome shotgun sequence	18455..19246	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOLBU010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.denovo.136, whole genome shotgun sequence	1055..2080	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOLBU010000131.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.denovo.136, whole genome shotgun sequence	50..826	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABOLBU010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.guided.086, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLBU010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.guided.086, whole genome shotgun sequence	1259..2050	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOLBU010000188.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.guided.116, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOLBU010000191.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.guided.137, whole genome shotgun sequence	1094..2119	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOLBU010000191.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.guided.137, whole genome shotgun sequence	89..865	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOLBU010000160.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.denovo.169, whole genome shotgun sequence	922..1797	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOLBU010000194.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.guided.164, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABOLBU010000144.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.denovo.151, whole genome shotgun sequence	320..736	Fosfomycin	AB522970	fosA3	100	417/417	ABOLBU010000193.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.guided.154, whole genome shotgun sequence	361..777	Fosfomycin	AB522970	floR	98.19	1214/1215	ABOLBU010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.denovo.130, whole genome shotgun sequence	3189..4402	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOLBU010000189.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.guided.133, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOLBU010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.denovo.083, whole genome shotgun sequence	17111..17950	Sulfamethoxazole	U12338	sul1	100	840/840	ABOLBU010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.guided.086, whole genome shotgun sequence	2555..3394	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOLBU010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.denovo.083, whole genome shotgun sequence	3395..4594	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOLBU010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.guided.086, whole genome shotgun sequence	15911..17110	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOLBU010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.denovo.127, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOLBU010000190.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.guided.134, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																														gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOLBU010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314678 SAMN38042673-rid20022863.denovo.098, whole genome shotgun sequence	13998..14557																																																						avrA	ABOLBU010000017.1	72142..73011	99.655	870	0						
GCA_033144135.1_PDT001962711.1_genomic.fna	Salmonella_enterica	0.5234	61.806 KB	26	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	ColpVC,IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLBS010000009.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314679 SAMN38042674-rid20022883.denovo.009, whole genome shotgun sequence	87646..88083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLBS010000176.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314679 SAMN38042674-rid20022883.guided.070, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	ColpVC	98.96	193 / 193	ABOLBS010000146.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314679 SAMN38042674-rid20022883.denovo.149, whole genome shotgun sequence	806..998	enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOLBS010000125.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314679 SAMN38042674-rid20022883.denovo.126, whole genome shotgun sequence	1834..2515		enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABOLBS010000081.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314679 SAMN38042674-rid20022883.denovo.082, whole genome shotgun sequence	4946..5442																																									avrA	ABOLBS010000023.1	62202..63071	98.966	870	0						
GCA_033144155.1_PDT001962712.1_genomic.fna	Salmonella_enterica	0.5242	57.727 KB	27	aroC_11,dnaN_41,hemD_55,hisD_42,purE_525,sucA_58,thrA_4	2269	-:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_41	hemD	100	100	hemD_55	hisD	100	100	hisD_42	purE	100	100	purE_525	sucA	100	100	sucA_58	thrA	100	100	thrA_4	-	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:g,m,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLBR010000022.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22314681 SAMN38042676-rid20022273.denovo.022, whole genome shotgun sequence	12479..12916	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLBR010000145.1 Salmonella enterica subsp. enterica serovar Montevideo strain FSIS22314681 SAMN38042676-rid20022273.guided.086, whole genome shotgun sequence	2254..2691	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033144175.1_PDT001962708.1_genomic.fna	Salmonella_enterica	0.5224	60.872 KB	25	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	-:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	-	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:l,z13:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOLBV010000014.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314676 SAMN38042665-rid20022853.denovo.014, whole genome shotgun sequence	15396..15833	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLBV010000073.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314676 SAMN38042665-rid20022853.denovo.075, whole genome shotgun sequence	11903..12739	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABOLBV010000073.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314676 SAMN38042665-rid20022853.denovo.075, whole genome shotgun sequence	10872..11685	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aph(3'')-Ib	100	804/804	ABOLBV010000073.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314676 SAMN38042665-rid20022853.denovo.075, whole genome shotgun sequence	12739..13542	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABOLBV010000137.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314676 SAMN38042665-rid20022853.guided.068, whole genome shotgun sequence	7725..8162	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLBV010000139.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314676 SAMN38042665-rid20022853.guided.091, whole genome shotgun sequence	7939..8775	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABOLBV010000139.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314676 SAMN38042665-rid20022853.guided.091, whole genome shotgun sequence	8993..9806	Kanamycin, Neomycin, Kanamycin, Unknown Aminoglycoside, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aph(3'')-Ib	100	804/804	ABOLBV010000139.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314676 SAMN38042665-rid20022853.guided.091, whole genome shotgun sequence	7136..7939	Streptomycin	AF321551	sul2	99.88	816/816	ABOLBV010000046.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314676 SAMN38042665-rid20022853.denovo.046, whole genome shotgun sequence	2699..3514	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABOLBV010000138.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314676 SAMN38042665-rid20022853.guided.089, whole genome shotgun sequence	12299..13114	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOLBV010000073.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314676 SAMN38042665-rid20022853.denovo.075, whole genome shotgun sequence	2224..3429	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOLBV010000141.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314676 SAMN38042665-rid20022853.guided.114, whole genome shotgun sequence	2255..3460	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLBV010000009.1	95004..95872	99.655	869	0						
GCA_033144195.1_PDT001962707.1_genomic.fna	Salmonella_enterica	0.523	58.952 KB	29	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLBX010000022.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.denovo.022, whole genome shotgun sequence	12417..12854	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOLBX010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.denovo.069, whole genome shotgun sequence	22658..23449	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLBX010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.denovo.069, whole genome shotgun sequence	22658..23449	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOLBX010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.denovo.135, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOLBX010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.denovo.135, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOLBX010000186.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.guided.066, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOLBX010000189.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.guided.118, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLBX010000189.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.guided.118, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOLBX010000193.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.guided.171, whole genome shotgun sequence	247..1272	Hygromycin	V01499	aac(3)-IV	99.87	777/777	ABOLBX010000194.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.guided.181, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	aac(3)-IV	100	777/777	ABOLBX010000195.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.guided.182, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOLBX010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.denovo.140, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOLBX010000191.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.guided.138, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOLBX010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.denovo.132, whole genome shotgun sequence	3299..4512	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOLBX010000192.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.guided.148, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOLBX010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.denovo.069, whole genome shotgun sequence	21314..22153	Sulfamethoxazole	U12338	sul1	100	840/840	ABOLBX010000189.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.guided.118, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOLBX010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.denovo.069, whole genome shotgun sequence	7598..8797	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOLBX010000190.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.guided.125, whole genome shotgun sequence	1878..3077	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																			gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOLBX010000095.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314648 SAMN38042664-rid20022843.denovo.098, whole genome shotgun sequence	11439..11998																																																						avrA	ABOLBX010000039.1	39528..40397	99.655	870	0						
GCA_033144215.1_PDT001962706.1_genomic.fna	Salmonella_enterica	0.5229	63.543 KB	24	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLBY010000031.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314645 SAMN38042661-rid20022833.denovo.031, whole genome shotgun sequence	6390..6827	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLBY010000161.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314645 SAMN38042661-rid20022833.guided.068, whole genome shotgun sequence	14099..14536	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLBY010000092.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314645 SAMN38042661-rid20022833.denovo.093, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOLBY010000109.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314645 SAMN38042661-rid20022833.denovo.111, whole genome shotgun sequence	3391..3652																																																avrA	ABOLBY010000002.1	81622..82491	99.54	870	0						
GCA_033144235.1_PDT001962705.1_genomic.fna	Salmonella_enterica	0.5212	58.656 KB	26	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	-:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	-	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	I -:f,g,s:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLBW010000004.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314647 SAMN38042663-rid20022823.denovo.004, whole genome shotgun sequence	6396..6833	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLBW010000169.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314647 SAMN38042663-rid20022823.guided.093, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOLBW010000072.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314647 SAMN38042663-rid20022823.denovo.073, whole genome shotgun sequence	17993..18415	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOLBW010000171.1 Salmonella enterica subsp. enterica serovar Agona strain FSIS22314647 SAMN38042663-rid20022823.guided.115, whole genome shotgun sequence	4873..5295	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLBW010000021.1	62207..63076	99.195	870	0						
GCA_033144255.1_PDT001962703.1_genomic.fna	Salmonella_enterica	0.5212	66.002 KB	23	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLCD010000013.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314644 SAMN38042660-rid20022803.denovo.013, whole genome shotgun sequence	12521..12958	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLCD010000175.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314644 SAMN38042660-rid20022803.guided.057, whole genome shotgun sequence	14383..14820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII	94.27	262 / 261	ABOLCD010000089.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314644 SAMN38042660-rid20022803.denovo.092, whole genome shotgun sequence	4654..4913	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOLCD010000105.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314644 SAMN38042660-rid20022803.denovo.108, whole genome shotgun sequence	4394..4535		enterobacteriales	IncX1	100	373 / 373	ABOLCD010000127.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS22314644 SAMN38042660-rid20022803.denovo.130, whole genome shotgun sequence	1128..1500																																									avrA	ABOLCD010000006.1	128668..129537	99.655	870	0						
GCA_033144275.1_PDT001962702.1_genomic.fna	Salmonella_enterica	0.5218	60.681 KB	25	aroC_41,dnaN_9,hemD_21,hisD_12,purE_8,sucA_37,thrA_17	83	-:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_41	dnaN	100	100	dnaN_9	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_8	sucA	100	100	sucA_37	thrA	100	100	thrA_17	-	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,2	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOLBZ010000020.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22314637 SAMN38042473-rid20022263.denovo.020, whole genome shotgun sequence	11313..11750	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOLBZ010000142.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22314637 SAMN38042473-rid20022263.guided.064, whole genome shotgun sequence	15580..16017	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOLBZ010000106.1 Salmonella enterica subsp. enterica serovar Muenchen strain FSIS22314637 SAMN38042473-rid20022263.denovo.109, whole genome shotgun sequence	239..369																																																						avrA	ABOLBZ010000022.1	61390..62259	99.425	870	0						
GCA_033144635.1_PDT001962701.1_genomic.fna	Salmonella_enterica	0.5232	57.696 KB	27	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	-:l,z13:1,5	6	aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3')-Ia,aph(3'')-Ib,sul2,sul2,tet(B),tet(B)	1	parC_p.T57S	0		aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	-	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:l,z13:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOLCU010000020.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314635 SAMN38042466-rid20022793.denovo.020, whole genome shotgun sequence	11341..11778	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLCU010000074.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314635 SAMN38042466-rid20022793.denovo.076, whole genome shotgun sequence	13753..14589	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABOLCU010000074.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314635 SAMN38042466-rid20022793.denovo.076, whole genome shotgun sequence	12722..13535	Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aph(3'')-Ib	100	804/804	ABOLCU010000074.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314635 SAMN38042466-rid20022793.denovo.076, whole genome shotgun sequence	14589..15392	Streptomycin	AF321551	aac(6')-Iaa	98.4	438/438	ABOLCU010000175.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314635 SAMN38042466-rid20022793.guided.075, whole genome shotgun sequence	7420..7857	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLCU010000177.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314635 SAMN38042466-rid20022793.guided.104, whole genome shotgun sequence	3276..4112	Streptomycin	M28829	aph(3')-Ia	99.75	814/816	ABOLCU010000177.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314635 SAMN38042466-rid20022793.guided.104, whole genome shotgun sequence	4330..5143	Unknown Aminoglycoside, Kanamycin, Kanamycin, Neomycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aph(3'')-Ib	100	804/804	ABOLCU010000177.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314635 SAMN38042466-rid20022793.guided.104, whole genome shotgun sequence	2473..3276	Streptomycin	AF321551	sul2	99.88	816/816	ABOLCU010000035.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314635 SAMN38042466-rid20022793.denovo.035, whole genome shotgun sequence	2913..3728	Sulfamethoxazole	AY034138	sul2	99.88	816/816	ABOLCU010000176.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314635 SAMN38042466-rid20022793.guided.089, whole genome shotgun sequence	12299..13114	Sulfamethoxazole	AY034138	tet(B)	100	1206/1206	ABOLCU010000074.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314635 SAMN38042466-rid20022793.denovo.076, whole genome shotgun sequence	4074..5279	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOLCU010000179.1 Salmonella enterica subsp. enterica serovar Uganda strain FSIS22314635 SAMN38042466-rid20022793.guided.151, whole genome shotgun sequence	224..1429	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLCU010000019.1	61534..62402	99.655	869	0						
GCA_033144655.1_PDT001962700.1_genomic.fna	Salmonella_enterica	0.5229	58.739 KB	23	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	-:e,h:1,6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	-	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:1,6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOLCS010000002.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314638 SAMN38042459-rid20022783.denovo.002, whole genome shotgun sequence	206333..206770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.09	438/438	ABOLCS010000156.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS22314638 SAMN38042459-rid20022783.guided.100, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLCS010000020.1	61521..62390	99.54	870	0						
GCA_033144675.1_PDT001962699.1_genomic.fna	Salmonella_enterica	0.5232	59.668 KB	27	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLCV010000022.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314639 SAMN38042462-rid20022773.denovo.022, whole genome shotgun sequence	16084..16521	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLCV010000167.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314639 SAMN38042462-rid20022773.guided.088, whole genome shotgun sequence	14740..15177	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLCV010000103.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314639 SAMN38042462-rid20022773.denovo.106, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOLCV010000118.1 Salmonella enterica subsp. enterica serovar Enteritidis strain FSIS22314639 SAMN38042462-rid20022773.denovo.121, whole genome shotgun sequence	3436..3697																																																avrA	ABOLCV010000013.1	81599..82468	99.54	870	0						
GCA_033144715.1_PDT001962696.1_genomic.fna	Salmonella_enterica	0.5233	58.372 KB	29	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLCY010000025.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314643 SAMN38042452-rid20022743.denovo.025, whole genome shotgun sequence	12512..12949	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOLCY010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314643 SAMN38042452-rid20022743.denovo.099, whole genome shotgun sequence	11910..12701	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLCY010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314643 SAMN38042452-rid20022743.denovo.099, whole genome shotgun sequence	11910..12701	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOLCY010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314643 SAMN38042452-rid20022743.guided.107, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOLCY010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314643 SAMN38042452-rid20022743.guided.110, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLCY010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314643 SAMN38042452-rid20022743.guided.110, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JQ414041	blaCTX-M-65	100	876/876	ABOLCY010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314643 SAMN38042452-rid20022743.denovo.130, whole genome shotgun sequence	1109..1984	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOLCY010000172.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314643 SAMN38042452-rid20022743.guided.131, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABOLCY010000130.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314643 SAMN38042452-rid20022743.denovo.136, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABOLCY010000174.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314643 SAMN38042452-rid20022743.guided.144, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABOLCY010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314643 SAMN38042452-rid20022743.denovo.099, whole genome shotgun sequence	10566..11405	Sulfamethoxazole	U12338	sul1	100	840/840	ABOLCY010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314643 SAMN38042452-rid20022743.guided.110, whole genome shotgun sequence	2393..3232	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOLCY010000103.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314643 SAMN38042452-rid20022743.denovo.105, whole genome shotgun sequence	1907..3106	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOLCY010000173.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314643 SAMN38042452-rid20022743.guided.134, whole genome shotgun sequence	1931..3130	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOLCY010000114.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314643 SAMN38042452-rid20022743.denovo.118, whole genome shotgun sequence	5558..6117																																																						avrA	ABOLCY010000008.1	101963..102832	99.655	870	0						
GCA_033144735.1_PDT001962697.1_genomic.fna	Salmonella_enterica	0.5238	38.192 KB	43	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLCW010000068.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314640 SAMN38042455-rid20022753.denovo.069, whole genome shotgun sequence	11319..11756	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOLCW010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314640 SAMN38042455-rid20022753.denovo.095, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLCW010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314640 SAMN38042455-rid20022753.denovo.095, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOLCW010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314640 SAMN38042455-rid20022753.denovo.162, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOLCW010000157.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314640 SAMN38042455-rid20022753.denovo.162, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABOLCW010000224.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314640 SAMN38042455-rid20022753.guided.096, whole genome shotgun sequence	936..1727	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLCW010000224.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314640 SAMN38042455-rid20022753.guided.096, whole genome shotgun sequence	936..1727	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOLCW010000226.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314640 SAMN38042455-rid20022753.guided.122, whole genome shotgun sequence	9862..10299	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOLCW010000227.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314640 SAMN38042455-rid20022753.guided.161, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOLCW010000227.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314640 SAMN38042455-rid20022753.guided.161, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABOLCW010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314640 SAMN38042455-rid20022753.denovo.095, whole genome shotgun sequence	17100..17939	Sulfamethoxazole	U12338	sul1	100	840/840	ABOLCW010000224.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314640 SAMN38042455-rid20022753.guided.096, whole genome shotgun sequence	2232..3071	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOLCW010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314640 SAMN38042455-rid20022753.denovo.095, whole genome shotgun sequence	3384..4583	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOLCW010000224.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314640 SAMN38042455-rid20022753.guided.096, whole genome shotgun sequence	15588..16787	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOLCW010000141.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314640 SAMN38042455-rid20022753.denovo.145, whole genome shotgun sequence	5614..6173																																																						avrA	ABOLCW010000012.1	61449..62318	99.655	870	0						
GCA_033144755.1_PDT001962695.1_genomic.fna	Salmonella_enterica	0.5232	52.231 KB	30	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLCX010000064.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.denovo.065, whole genome shotgun sequence	12386..12823	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOLCX010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.denovo.083, whole genome shotgun sequence	18442..19233	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLCX010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.denovo.083, whole genome shotgun sequence	18442..19233	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOLCX010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.denovo.127, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOLCX010000123.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.denovo.127, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABOLCX010000179.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.guided.082, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLCX010000179.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.guided.082, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOLCX010000181.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.guided.103, whole genome shotgun sequence	12121..12558	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOLCX010000183.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.guided.135, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOLCX010000183.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.guided.135, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOLCX010000134.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.denovo.141, whole genome shotgun sequence	900..1775	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOLCX010000184.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.guided.138, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOLCX010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.denovo.131, whole genome shotgun sequence	2792..4005	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOLCX010000182.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.guided.130, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOLCX010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.denovo.083, whole genome shotgun sequence	17098..17937	Sulfamethoxazole	U12338	sul1	100	840/840	ABOLCX010000179.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.guided.082, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOLCX010000081.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.denovo.083, whole genome shotgun sequence	3382..4581	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOLCX010000179.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.guided.082, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOLCX010000096.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314633 SAMN38042384-rid20022733.denovo.098, whole genome shotgun sequence	9109..9668																																																						avrA	ABOLCX010000006.1	39536..40405	99.655	870	0						
GCA_033144775.1_PDT001962694.1_genomic.fna	Salmonella_enterica	0.5234	57.707 KB	27	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	9	aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,blaCTX-M-65,blaCTX-M-65,floR,floR,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLCZ010000022.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.denovo.022, whole genome shotgun sequence	12462..12899	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOLCZ010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.denovo.076, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLCZ010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.denovo.076, whole genome shotgun sequence	18444..19235	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOLCZ010000132.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.denovo.139, whole genome shotgun sequence	1054..2079	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOLCZ010000132.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.denovo.139, whole genome shotgun sequence	49..825	Gentamicin, Tobramycin	DQ241380	aac(6')-Iaa	97.49	438/438	ABOLCZ010000187.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.guided.040, whole genome shotgun sequence	40137..40574	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOLCZ010000190.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.guided.097, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLCZ010000190.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.guided.097, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOLCZ010000193.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.guided.138, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOLCZ010000193.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.guided.138, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	blaCTX-M-65	100	876/876	ABOLCZ010000160.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.denovo.169, whole genome shotgun sequence	925..1800	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOLCZ010000195.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.guided.168, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	floR	98.19	1214/1215	ABOLCZ010000127.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.denovo.132, whole genome shotgun sequence	3189..4402	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOLCZ010000192.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.guided.137, whole genome shotgun sequence	1269..2482	Chloramphenicol, Florfenicol	AF118107	sul1	100	840/840	ABOLCZ010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.denovo.076, whole genome shotgun sequence	17100..17939	Sulfamethoxazole	U12338	sul1	100	840/840	ABOLCZ010000190.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.guided.097, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOLCZ010000074.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.denovo.076, whole genome shotgun sequence	3384..4583	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOLCZ010000191.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.guided.125, whole genome shotgun sequence	1838..3037	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOLCZ010000121.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.denovo.126, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOLCZ010000194.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.guided.155, whole genome shotgun sequence	142..615	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																												gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOLCZ010000145.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS22314632 SAMN38042389-rid20022723.denovo.152, whole genome shotgun sequence	955..1514																																																						avrA	ABOLCZ010000018.1	81701..82570	99.655	870	0						
GCA_033144795.1_PDT001962693.1_genomic.fna	Salmonella_enterica	0.5227	51.916 KB	31	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLDA010000060.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314634 SAMN38042387-rid20022713.denovo.060, whole genome shotgun sequence	12511..12948	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLDA010000193.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314634 SAMN38042387-rid20022713.guided.139, whole genome shotgun sequence	4018..4455	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOLDA010000131.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314634 SAMN38042387-rid20022713.denovo.133, whole genome shotgun sequence	1916..2597	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABOLDA010000090.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS22314634 SAMN38042387-rid20022713.denovo.091, whole genome shotgun sequence	5338..5834																																																avrA	ABOLDA010000031.1	48800..49669	98.966	870	0						
GCA_033145395.1_PDT001962654.1_genomic.fna	Salmonella_enterica	0.5218	377.644 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOLEA010000001.1 Salmonella enterica strain PNUSAS396729 SAMN38041571-rid20022143.denovo.01, whole genome shotgun sequence	605887..606324	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOLEA010000037.1 Salmonella enterica strain PNUSAS396729 SAMN38041571-rid20022143.guided.27, whole genome shotgun sequence	3544..3981	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOLEA010000030.1 Salmonella enterica strain PNUSAS396729 SAMN38041571-rid20022143.denovo.33, whole genome shotgun sequence	1506..1636	enterobacteriales	Col440I	90.27	113 / 114	ABOLEA010000029.1 Salmonella enterica strain PNUSAS396729 SAMN38041571-rid20022143.denovo.32, whole genome shotgun sequence	3345..3457																																																avrA	ABOLEA010000002.1	563627..564496	99.77	870	0						
GCA_033145415.1_PDT001962653.1_genomic.fna	Salmonella_enterica	0.5204	364.096 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLEB010000001.1 Salmonella enterica strain PNUSAS396731 SAMN38041573-rid20022133.denovo.01, whole genome shotgun sequence	563827..564264	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLEB010000030.1 Salmonella enterica strain PNUSAS396731 SAMN38041573-rid20022133.guided.21, whole genome shotgun sequence	12465..12902	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLEB010000011.1	140470..141338	99.195	870	0						
GCA_033145435.1_PDT001962652.1_genomic.fna	Salmonella_enterica	0.5219	345.074 KB	6	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLEC010000001.1 Salmonella enterica strain PNUSAS396730 SAMN38041572-rid20022123.denovo.01, whole genome shotgun sequence	475473..475910	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLEC010000027.1 Salmonella enterica strain PNUSAS396730 SAMN38041572-rid20022123.guided.23, whole genome shotgun sequence	3769..4206	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLEC010000011.1	140203..141071	99.195	870	0						
GCA_033145455.1_PDT001962651.1_genomic.fna	Salmonella_enterica	0.5214	242.334 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLED010000001.1 Salmonella enterica strain PNUSAS396732 SAMN38041570-rid20022113.denovo.01, whole genome shotgun sequence	569491..569928	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLED010000043.1 Salmonella enterica strain PNUSAS396732 SAMN38041570-rid20022113.guided.34, whole genome shotgun sequence	4647..5084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOLED010000007.1	174926..175795	99.885	870	0						
GCA_033145475.1_PDT001962650.1_genomic.fna	Salmonella_enterica	0.5215	338.84 KB	4	aroC_2,dnaN_57,hemD_15,hisD_14,purE_15,sucA_20,thrA_12	132	8:e,h:1,2	9	aac(6')-Iaa,aadA2b,aac(6')-Iaa,aadA2b,blaCARB-2,blaCARB-2,mph(A),mph(A),floR,floR,floR,qnrA1,qnrA1,sul1,sul1,tet(A),tet(A),dfrA1,dfrA1	1	parC_p.T57S	2	IncR,IncX1	aroC	100	100	aroC_2	dnaN	100	100	dnaN_57	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_20	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOLEE010000001.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.denovo.01, whole genome shotgun sequence	336137..336574	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOLEE010000030.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.denovo.34, whole genome shotgun sequence	52..831	Spectinomycin, Streptomycin	D43625	aac(6')-Iaa	99.54	438/438	ABOLEE010000041.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.guided.32, whole genome shotgun sequence	1385..1822	Amikacin, Tobramycin	NC_003197	aadA2b	99.87	780/780	ABOLEE010000042.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.guided.33, whole genome shotgun sequence	4206..4985	Spectinomycin, Streptomycin	D43625	blaCARB-2	100	867/867	ABOLEE010000030.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.denovo.34, whole genome shotgun sequence	961..1827	Ampicillin, Amoxicillin, Piperacillin	M69058	blaCARB-2	100	867/867	ABOLEE010000042.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.guided.33, whole genome shotgun sequence	3210..4076	Ampicillin, Amoxicillin, Piperacillin	M69058	mph(A)	99.89	906/906	ABOLEE010000026.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.denovo.28, whole genome shotgun sequence	5286..6191	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	mph(A)	99.89	906/906	ABOLEE010000043.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.guided.35, whole genome shotgun sequence	109..1014	Erythromycin, Azithromycin, Spiramycin, Telithromycin	D16251	floR	98.19	1214/1215	ABOLEE010000029.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.denovo.31, whole genome shotgun sequence	2688..3901	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOLEE010000044.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.guided.37, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	floR	98.11	1214/1215	ABOLEE010000045.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.guided.38, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrA1	100	657/657	ABOLEE010000030.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.denovo.34, whole genome shotgun sequence	2087..2743	Ciprofloxacin	AY070235	qnrA1	100	657/657	ABOLEE010000042.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.guided.33, whole genome shotgun sequence	2294..2950	Ciprofloxacin	AY070235	sul1	100	840/840	ABOLEE010000033.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.denovo.43, whole genome shotgun sequence	4..843	Sulfamethoxazole	U12338	sul1	100	840/840	ABOLEE010000047.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.guided.41, whole genome shotgun sequence	453..1292	Sulfamethoxazole	U12338	tet(A)	100	1275/1275	ABOLEE010000029.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.denovo.31, whole genome shotgun sequence	813..2087	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOLEE010000046.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.guided.40, whole genome shotgun sequence	844..2118	Doxycycline, Tetracycline	AF534183	dfrA1	100	474/474	ABOLEE010000034.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.denovo.44, whole genome shotgun sequence	592..1065	Trimethoprim	X00926	dfrA1	100	474/474	ABOLEE010000048.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.guided.42, whole genome shotgun sequence	189..662	Trimethoprim	X00926																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOLEE010000025.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.denovo.26, whole genome shotgun sequence	4434..4684	enterobacteriales	IncX1	94.92	374 / 374	ABOLEE010000022.1 Salmonella enterica strain PNUSAS396733 SAMN38041574-rid20022103.denovo.23, whole genome shotgun sequence	13796..14169																																																avrA	ABOLEE010000002.1	553479..554348	99.77	870	0						
GCA_033145495.1_PDT001962648.1_genomic.fna	Salmonella_enterica	0.5229	222.048 KB	9	aroC_147,dnaN_13,hemD_15,hisD_123,purE_15,sucA_19,thrA_17	684	3,10:l,z13:1,5	2	aac(6')-Iaa,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	1	IncQ1	aroC	100	100	aroC_147	dnaN	100	100	dnaN_13	hemD	100	100	hemD_15	hisD	100	100	hisD_123	purE	100	100	purE_15	sucA	100	100	sucA_19	thrA	100	100	thrA_17	3,10	l,z13	1,5	Salmonella enterica subspecies enterica (subspecies I)	Uganda		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOLEF010000001.1 Salmonella enterica strain PNUSAS396727 SAMN38041561-rid20022083.denovo.01, whole genome shotgun sequence	230054..230491	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOLEF010000042.1 Salmonella enterica strain PNUSAS396727 SAMN38041561-rid20022083.guided.38, whole genome shotgun sequence	1780..2217	Amikacin, Tobramycin	NC_003197	tet(A)	100	1275/1275	ABOLEF010000035.1 Salmonella enterica strain PNUSAS396727 SAMN38041561-rid20022083.denovo.37, whole genome shotgun sequence	2969..4243	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOLEF010000043.1 Salmonella enterica strain PNUSAS396727 SAMN38041561-rid20022083.guided.39, whole genome shotgun sequence	924..2198	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncQ1	100	796 / 796	ABOLEF010000035.1 Salmonella enterica strain PNUSAS396727 SAMN38041561-rid20022083.denovo.37, whole genome shotgun sequence	292..1087																																																						avrA	ABOLEF010000012.1	95196..96064	99.655	869	0						
GCA_033145515.1_PDT001962645.1_genomic.fna	Salmonella_enterica	0.5222	231.198 KB	6	aroC_111,dnaN_47,hemD_49,hisD_42,purE_12,sucA_58,thrA_3	654	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_111	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_42	purE	100	100	purE_12	sucA	100	100	sucA_58	thrA	100	100	thrA_3	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLEH010000001.1 Salmonella enterica strain PNUSAS396726 SAMN38041564-rid20022053.denovo.01, whole genome shotgun sequence	498176..498613	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLEH010000033.1 Salmonella enterica strain PNUSAS396726 SAMN38041564-rid20022053.guided.25, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	100	262 / 262	ABOLEH010000015.1 Salmonella enterica strain PNUSAS396726 SAMN38041564-rid20022053.denovo.15, whole genome shotgun sequence	55399..55660																																																						avrA	ABOLEH010000002.1	101009..101878	98.966	870	0						
GCA_033145535.1_PDT001962646.1_genomic.fna	Salmonella_enterica	0.5208	273.887 KB	7	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLEG010000002.1 Salmonella enterica strain PNUSAS396725 SAMN38041563-rid20022063.denovo.02, whole genome shotgun sequence	380333..380770	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLEG010000041.1 Salmonella enterica strain PNUSAS396725 SAMN38041563-rid20022063.guided.30, whole genome shotgun sequence	19695..20132	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOLEG010000017.1 Salmonella enterica strain PNUSAS396725 SAMN38041563-rid20022063.denovo.17, whole genome shotgun sequence	71534..71675																																																																	
GCA_033145575.1_PDT001962644.1_genomic.fna	Salmonella_enterica	0.5206	230.217 KB	7	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLEK010000001.1 Salmonella enterica strain PNUSAS396728 SAMN38041565-rid20022043.denovo.01, whole genome shotgun sequence	374266..374703	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLEK010000045.1 Salmonella enterica strain PNUSAS396728 SAMN38041565-rid20022043.guided.38, whole genome shotgun sequence	1506..1943	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLEK010000010.1	140203..141071	99.195	870	0						
GCA_033145635.1_PDT001962642.1_genomic.fna	Salmonella_enterica	0.5201	546.56 KB	4	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	Col(pHAD28),Col440I	aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLEM010000001.1 Salmonella enterica strain PNUSAS396724 SAMN38041562-rid20022023.denovo.01, whole genome shotgun sequence	462090..462527	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLEM010000065.1 Salmonella enterica strain PNUSAS396724 SAMN38041562-rid20022023.guided.28, whole genome shotgun sequence	10859..11296	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.02	129 / 131	ABOLEM010000036.1 Salmonella enterica strain PNUSAS396724 SAMN38041562-rid20022023.denovo.39, whole genome shotgun sequence	636..764	enterobacteriales	Col440I	94.55	110 / 114	ABOLEM010000033.1 Salmonella enterica strain PNUSAS396724 SAMN38041562-rid20022023.denovo.36, whole genome shotgun sequence	1189..1298																																																avrA	ABOLEM010000003.1	145579..146448	98.966	870	0						
GCA_033146115.1_PDT001962610.1_genomic.fna	Salmonella_enterica	0.5201	389.426 KB	5	aroC_7,dnaN_6,hemD_8,hisD_8,purE_7,sucA_8,thrA_13	14	1,3,19:g,s,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_7	dnaN	100	100	dnaN_6	hemD	100	100	hemD_8	hisD	100	100	hisD_8	purE	100	100	purE_7	sucA	100	100	sucA_8	thrA	100	100	thrA_13	1,3,19	g,s,t	-	Salmonella enterica subspecies enterica (subspecies I)	Senftenberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLFH010000001.1 Salmonella enterica subsp. enterica strain 23IA10PC01-L-S1 SAMN38041058-rid20021703.denovo.01, whole genome shotgun sequence	462105..462542	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLFH010000046.1 Salmonella enterica subsp. enterica strain 23IA10PC01-L-S1 SAMN38041058-rid20021703.guided.32, whole genome shotgun sequence	2294..2731	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLFH010000003.1	39599..40468	98.966	870	0						
GCA_033146135.1_PDT001962609.1_genomic.fna	Salmonella_enterica	0.5217	263.682 KB	7	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncY	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLFI010000003.1 Salmonella enterica subsp. enterica strain 23IA10PC04-L-S1 SAMN38041059-rid20021693.denovo.03, whole genome shotgun sequence	34032..34469	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOLFI010000040.1 Salmonella enterica subsp. enterica strain 23IA10PC04-L-S1 SAMN38041059-rid20021693.guided.33, whole genome shotgun sequence	2337..2774	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncY	99.74	765 / 765	ABOLFI010000016.1 Salmonella enterica subsp. enterica strain 23IA10PC04-L-S1 SAMN38041059-rid20021693.denovo.16, whole genome shotgun sequence	63571..64335																																																						avrA	ABOLFI010000002.1	149828..150697	99.655	870	0						
GCA_033146155.1_PDT001962605.1_genomic.fna	Salmonella_enterica	0.521	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOLFL010000003.1 Salmonella enterica strain PNUSAS396688 SAMN38040158-rid20021653.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOLFL010000041.1 Salmonella enterica strain PNUSAS396688 SAMN38040158-rid20021653.guided.26, whole genome shotgun sequence	19471..19908	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOLFL010000023.1 Salmonella enterica strain PNUSAS396688 SAMN38040158-rid20021653.denovo.23, whole genome shotgun sequence	44730..45372	enterobacteriales	IncFII(S)	100	262 / 262	ABOLFL010000023.1 Salmonella enterica strain PNUSAS396688 SAMN38040158-rid20021653.denovo.23, whole genome shotgun sequence	29384..29645																																																avrA	ABOLFL010000005.1	175008..175876	100	869	0						
GCA_033146175.1_PDT001962604.1_genomic.fna	Salmonella_enterica	0.521	207.445 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLFM010000001.1 Salmonella enterica strain PNUSAS396678 SAMN38040169-rid20021643.denovo.01, whole genome shotgun sequence	115022..115459	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLFM010000048.1 Salmonella enterica strain PNUSAS396678 SAMN38040169-rid20021643.guided.32, whole genome shotgun sequence	8799..9236	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOLFM010000022.1 Salmonella enterica strain PNUSAS396678 SAMN38040169-rid20021643.denovo.22, whole genome shotgun sequence	73236..73377																																																						avrA	ABOLFM010000006.1	174998..175866	99.77	870	0						
GCA_033146215.1_PDT001962602.1_genomic.fna	Salmonella_enterica	0.5208	387.654 KB	4	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLFO010000001.1 Salmonella enterica strain PNUSAS396681 SAMN38040172-rid20021623.denovo.01, whole genome shotgun sequence	477388..477825	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLFO010000045.1 Salmonella enterica strain PNUSAS396681 SAMN38040172-rid20021623.guided.20, whole genome shotgun sequence	32157..32594	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLFO010000002.1	503249..504119	99.196	871	0						
GCA_033146235.1_PDT001962601.1_genomic.fna	Salmonella_enterica	0.5212	380.045 KB	5	aroC_16,dnaN_43,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	5	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_43	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLFQ010000001.1 Salmonella enterica strain PNUSAS396677 SAMN38040171-rid20021613.denovo.01, whole genome shotgun sequence	386732..387169	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLFQ010000049.1 Salmonella enterica strain PNUSAS396677 SAMN38040171-rid20021613.guided.23, whole genome shotgun sequence	10647..11084	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLFQ010000005.1	150793..151663	99.196	871	0						
GCA_033146255.1_PDT001962597.1_genomic.fna	Salmonella_enterica	0.5222	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLFS010000001.1 Salmonella enterica strain PNUSAS396684 SAMN38040160-rid20021573.denovo.01, whole genome shotgun sequence	790288..790725	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLFS010000024.1 Salmonella enterica strain PNUSAS396684 SAMN38040160-rid20021573.guided.17, whole genome shotgun sequence	18114..18551	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLFS010000002.1	183135..184004	98.966	870	0						
GCA_033146275.1_PDT001962600.1_genomic.fna	Salmonella_enterica	0.52	194.322 KB	8	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOLFR010000002.1 Salmonella enterica strain PNUSAS396676 SAMN38040163-rid20021603.denovo.02, whole genome shotgun sequence	313693..314130	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOLFR010000053.1 Salmonella enterica strain PNUSAS396676 SAMN38040163-rid20021603.guided.40, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABOLFR010000021.1 Salmonella enterica strain PNUSAS396676 SAMN38040163-rid20021603.denovo.21, whole genome shotgun sequence	59161..59803																																																																	
GCA_033146315.1_PDT001962593.1_genomic.fna	Salmonella_enterica	0.5219	219.532 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLFU010000001.1 Salmonella enterica strain PNUSAS396679 SAMN38040173-rid20021533.denovo.01, whole genome shotgun sequence	381671..382108	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLFU010000044.1 Salmonella enterica strain PNUSAS396679 SAMN38040173-rid20021533.guided.35, whole genome shotgun sequence	14877..15314	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOLFU010000005.1	94139..95007	99.77	870	0						
GCA_033146335.1_PDT001962594.1_genomic.fna	Salmonella_enterica	0.5205	579.005 KB	3	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOLFT010000001.1 Salmonella enterica strain PNUSAS396680 SAMN38040162-rid20021543.denovo.01, whole genome shotgun sequence	534304..534741	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOLFT010000023.1 Salmonella enterica strain PNUSAS396680 SAMN38040162-rid20021543.guided.17, whole genome shotgun sequence	5070..5507	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLFT010000002.1	556197..557065	99.425	870	0						
GCA_033146395.1_PDT001962588.1_genomic.fna	Salmonella_enterica	0.5202	697.079 KB	2	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOLFX010000001.1 Salmonella enterica strain PNUSAS396675 SAMN38040161-rid20021483.denovo.01, whole genome shotgun sequence	996115..996552	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOLFX010000023.1 Salmonella enterica strain PNUSAS396675 SAMN38040161-rid20021483.guided.18, whole genome shotgun sequence	8225..8662	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	ABOLFX010000011.1 Salmonella enterica strain PNUSAS396675 SAMN38040161-rid20021483.denovo.11, whole genome shotgun sequence	71718..71859																																																						avrA	ABOLFX010000001.1	555947..556815	99.425	870	0						
GCA_033146435.1_PDT001962591.1_genomic.fna	Salmonella_enterica	0.5213	343.899 KB	5	aroC_45,dnaN_4,hemD_8,hisD_44,purE_27,sucA_9,thrA_8	85	2:a:1,5	1	aac(6')-Iaa,aac(6')-Iaa	2	gyrA_p.S83F,parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_45	dnaN	100	100	dnaN_4	hemD	100	100	hemD_8	hisD	100	100	hisD_44	purE	100	100	purE_27	sucA	100	100	sucA_9	thrA	100	100	thrA_8	2	a	1,5	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi A		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLFW010000001.1 Salmonella enterica strain PNUSAS396674 SAMN38040168-rid20021513.denovo.01, whole genome shotgun sequence	133775..134212	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOLFW010000040.1 Salmonella enterica strain PNUSAS396674 SAMN38040168-rid20021513.guided.30, whole genome shotgun sequence	2250..2687	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOLFW010000028.1 Salmonella enterica strain PNUSAS396674 SAMN38040168-rid20021513.denovo.31, whole genome shotgun sequence	1604..1734																																																																	
GCA_033146455.1_PDT001962585.1_genomic.fna	Salmonella_enterica	0.5206	879.204 KB	2	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLGB010000001.1 Salmonella enterica strain PNUSAS396685 SAMN38040170-rid20021453.denovo.01, whole genome shotgun sequence	1305232..1305669	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLGB010000025.1 Salmonella enterica strain PNUSAS396685 SAMN38040170-rid20021453.guided.18, whole genome shotgun sequence	7669..8106	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOLGB010000013.1 Salmonella enterica strain PNUSAS396685 SAMN38040170-rid20021453.denovo.13, whole genome shotgun sequence	6118..6651																																																						avrA	ABOLGB010000006.1	150694..151564	99.196	871	0						
GCA_033146475.1_PDT001962587.1_genomic.fna	Salmonella_enterica	0.5217	304.688 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_19,thrA_1	679	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLFY010000007.1 Salmonella enterica strain PNUSAS396673 SAMN38040159-rid20021473.denovo.07, whole genome shotgun sequence	136419..136856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLFY010000043.1 Salmonella enterica strain PNUSAS396673 SAMN38040159-rid20021473.guided.25, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLFY010000008.1	100892..101757	98.966	870	0						
GCA_033146515.1_PDT001962584.1_genomic.fna	Salmonella_enterica	0.522	410.978 KB	3	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOLFZ010000001.1 Salmonella enterica strain PNUSAS396683 SAMN38040164-rid20021443.denovo.01, whole genome shotgun sequence	634038..634475	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOLFZ010000025.1 Salmonella enterica strain PNUSAS396683 SAMN38040164-rid20021443.guided.15, whole genome shotgun sequence	18113..18550	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLFZ010000002.1	563810..564679	99.77	870	0						
GCA_033146555.1_PDT001962578.1_genomic.fna	Salmonella_enterica	0.5203	389.881 KB	5	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOLGK010000002.1 Salmonella enterica strain PNUSAS396689 SAMN38040165-rid20021383.denovo.02, whole genome shotgun sequence	119686..120123	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOLGK010000033.1 Salmonella enterica strain PNUSAS396689 SAMN38040165-rid20021383.guided.22, whole genome shotgun sequence	9924..10361	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLGK010000001.1	556069..556937	99.425	870	0						
GCA_033146575.1_PDT001962577.1_genomic.fna	Salmonella_enterica	0.5218	273.329 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOLGI010000002.1 Salmonella enterica strain PNUSAS396682 SAMN38040157-rid20021373.denovo.02, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOLGI010000041.1 Salmonella enterica strain PNUSAS396682 SAMN38040157-rid20021373.guided.23, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOLGI010000024.1 Salmonella enterica strain PNUSAS396682 SAMN38040157-rid20021373.denovo.25, whole genome shotgun sequence	44723..45365	enterobacteriales	IncFII(S)	100	262 / 262	ABOLGI010000024.1 Salmonella enterica strain PNUSAS396682 SAMN38040157-rid20021373.denovo.25, whole genome shotgun sequence	29377..29638																																																avrA	ABOLGI010000005.1	175018..175886	100	869	0						
GCA_033146595.1_PDT001962576.1_genomic.fna	Salmonella_enterica	0.5213	257.297 KB	6	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	2	aac(6')-Iaa,aac(6')-Iaa,tet(B),tet(B)	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLGJ010000001.1 Salmonella enterica strain PNUSAS396687 SAMN38040167-rid20021363.denovo.01, whole genome shotgun sequence	349019..349456	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLGJ010000054.1 Salmonella enterica strain PNUSAS396687 SAMN38040167-rid20021363.guided.31, whole genome shotgun sequence	8014..8451	Amikacin, Tobramycin	NC_003197	tet(B)	100	1206/1206	ABOLGJ010000032.1 Salmonella enterica strain PNUSAS396687 SAMN38040167-rid20021363.denovo.36, whole genome shotgun sequence	5918..7123	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOLGJ010000056.1 Salmonella enterica strain PNUSAS396687 SAMN38040167-rid20021363.guided.35, whole genome shotgun sequence	4118..5323	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																											avrA	ABOLGJ010000002.1	540570..541439	99.885	870	0						
GCA_033146695.1_PDT001962570.1_genomic.fna	Salmonella_enterica	0.5213	413.513 KB	5	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLGM010000001.1 Salmonella enterica strain PNUSAS396686 SAMN38040166-rid20021303.denovo.01, whole genome shotgun sequence	383535..383972	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLGM010000031.1 Salmonella enterica strain PNUSAS396686 SAMN38040166-rid20021303.guided.18, whole genome shotgun sequence	20662..21099	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLGM010000002.1	514960..515828	99.195	870	0						
GCA_033147195.1_PDT001962555.1_genomic.fna	Salmonella_enterica	0.5212	281.583 KB	5	aroC_18,dnaN_14,hemD_12,hisD_9,purE_5,sucA_18,thrA_21	36	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_18	dnaN	100	100	dnaN_14	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_18	thrA	100	100	thrA_21	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLHK010000001.1 Salmonella enterica strain PNUSAS396666 SAMN38039597-rid20020123.denovo.01, whole genome shotgun sequence	287867..288304	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLHK010000042.1 Salmonella enterica strain PNUSAS396666 SAMN38039597-rid20020123.guided.24, whole genome shotgun sequence	9778..10215	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOLHK010000004.1	174490..175359	99.885	870	0						
GCA_033147235.1_PDT001962554.1_genomic.fna	Salmonella_enterica	0.5214	478.496 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLHL010000001.1 Salmonella enterica strain PNUSAS396668 SAMN38039610-rid20021163.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLHL010000029.1 Salmonella enterica strain PNUSAS396668 SAMN38039610-rid20021163.guided.21, whole genome shotgun sequence	710..1147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLHL010000015.1 Salmonella enterica strain PNUSAS396668 SAMN38039610-rid20021163.denovo.15, whole genome shotgun sequence	49285..49927	enterobacteriales	IncFII(S)	100	262 / 262	ABOLHL010000015.1 Salmonella enterica strain PNUSAS396668 SAMN38039610-rid20021163.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOLHL010000002.1	553077..553946	99.54	870	0						
GCA_033147255.1_PDT001962553.1_genomic.fna	Salmonella_enterica	0.521	361.73 KB	5	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOLHM010000001.1 Salmonella enterica strain PNUSAS396656 SAMN38039594-rid20021153.denovo.01, whole genome shotgun sequence	503326..503763	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOLHM010000033.1 Salmonella enterica strain PNUSAS396656 SAMN38039594-rid20021153.guided.19, whole genome shotgun sequence	2552..2989	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLHM010000002.1	144854..145723	99.31	870	0						
GCA_033147275.1_PDT001962552.1_genomic.fna	Salmonella_enterica	0.519	727.149 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFII(p96A),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOLHQ010000001.1 Salmonella enterica strain PNUSAS396660 SAMN38039604-rid20021143.denovo.01, whole genome shotgun sequence	594881..595318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOLHQ010000025.1 Salmonella enterica strain PNUSAS396660 SAMN38039604-rid20021143.guided.17, whole genome shotgun sequence	1566..2003	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOLHQ010000010.1 Salmonella enterica strain PNUSAS396660 SAMN38039604-rid20021143.denovo.11, whole genome shotgun sequence	4335..4868	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOLHQ010000007.1 Salmonella enterica strain PNUSAS396660 SAMN38039604-rid20021143.denovo.07, whole genome shotgun sequence	86746..86887																																																avrA	ABOLHQ010000003.1	561504..562374	99.656	871	0						
GCA_033147295.1_PDT001962551.1_genomic.fna	Salmonella_enterica	0.5204	469.757 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLHO010000001.1 Salmonella enterica strain PNUSAS396671 SAMN38039603-rid20021133.denovo.01, whole genome shotgun sequence	771876..772313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLHO010000029.1 Salmonella enterica strain PNUSAS396671 SAMN38039603-rid20021133.guided.20, whole genome shotgun sequence	1704..2141	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLHO010000015.1 Salmonella enterica strain PNUSAS396671 SAMN38039603-rid20021133.denovo.15, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOLHO010000015.1 Salmonella enterica strain PNUSAS396671 SAMN38039603-rid20021133.denovo.15, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABOLHO010000016.1 Salmonella enterica strain PNUSAS396671 SAMN38039603-rid20021133.denovo.17, whole genome shotgun sequence	32011..32384																																									avrA	ABOLHO010000007.1	174787..175656	99.54	870	0						
GCA_033147315.1_PDT001962550.1_genomic.fna	Salmonella_enterica	0.5218	207.445 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLHN010000001.1 Salmonella enterica strain PNUSAS396659 SAMN38039601-rid20020113.denovo.01, whole genome shotgun sequence	232954..233391	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLHN010000054.1 Salmonella enterica strain PNUSAS396659 SAMN38039601-rid20020113.guided.46, whole genome shotgun sequence	1051..1488	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOLHN010000003.1	207907..208775	99.77	870	0						
GCA_033147335.1_PDT001962549.1_genomic.fna	Salmonella_enterica	0.5225	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLHP010000001.1 Salmonella enterica strain PNUSAS396662 SAMN38039593-rid20021123.denovo.01, whole genome shotgun sequence	790286..790723	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLHP010000031.1 Salmonella enterica strain PNUSAS396662 SAMN38039593-rid20021123.guided.20, whole genome shotgun sequence	7422..7859	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOLHP010000021.1 Salmonella enterica strain PNUSAS396662 SAMN38039593-rid20021123.denovo.24, whole genome shotgun sequence	1251..1381																																																						avrA	ABOLHP010000002.1	183111..183980	98.966	870	0						
GCA_033147395.1_PDT001962546.1_genomic.fna	Salmonella_enterica	0.522	330.235 KB	5	aroC_42,dnaN_11,hemD_48,hisD_149,purE_12,sucA_13,thrA_4	1575	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(pMET)	aroC	100	100	aroC_42	dnaN	100	100	dnaN_11	hemD	100	100	hemD_48	hisD	100	100	hisD_149	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLHX010000001.1 Salmonella enterica strain PNUSAS396654 SAMN38039607-rid20021093.denovo.01, whole genome shotgun sequence	148198..148635	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLHX010000042.1 Salmonella enterica strain PNUSAS396654 SAMN38039607-rid20021093.guided.22, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOLHX010000024.1 Salmonella enterica strain PNUSAS396654 SAMN38039607-rid20021093.denovo.26, whole genome shotgun sequence	11254..11896	enterobacteriales	IncFII(pMET)	94.97	577 / 577	ABOLHX010000023.1 Salmonella enterica strain PNUSAS396654 SAMN38039607-rid20021093.denovo.25, whole genome shotgun sequence	18878..19454																																																											
GCA_033147555.1_PDT001962535.1_genomic.fna	Salmonella_enterica	0.5202	435.146 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncFII(p14)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOLID010000001.1 Salmonella enterica strain PNUSAS396665 SAMN38039602-rid20020083.denovo.01, whole genome shotgun sequence	498159..498596	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOLID010000026.1 Salmonella enterica strain PNUSAS396665 SAMN38039602-rid20020083.guided.16, whole genome shotgun sequence	1883..2320	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	90.98	643 / 643	ABOLID010000013.1 Salmonella enterica strain PNUSAS396665 SAMN38039602-rid20020083.denovo.13, whole genome shotgun sequence	17040..17682	enterobacteriales	IncFII(p14)	92.02	263 / 262	ABOLID010000013.1 Salmonella enterica strain PNUSAS396665 SAMN38039602-rid20020083.denovo.13, whole genome shotgun sequence	33612..33870																																																avrA	ABOLID010000004.1	394854..395415	99.645	563	0	avrA	ABOLID010000004.1	395415..395673	98.842	259	6.49e-131
GCA_033147575.1_PDT001962534.1_genomic.fna	Salmonella_enterica	0.5217	249.464 KB	7	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_19,thrA_1	679	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_1	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLIF010000007.1 Salmonella enterica strain PNUSAS396657 SAMN38039596-rid20021003.denovo.07, whole genome shotgun sequence	136419..136856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLIF010000057.1 Salmonella enterica strain PNUSAS396657 SAMN38039596-rid20021003.guided.45, whole genome shotgun sequence	156..593	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLIF010000012.1	39610..40475	98.966	870	0						
GCA_033147655.1_PDT001962532.1_genomic.fna	Salmonella_enterica	0.5204	394.576 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOLIG010000005.1 Salmonella enterica strain PNUSAS396670 SAMN38039605-rid20020983.denovo.05, whole genome shotgun sequence	255160..255597	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOLIG010000027.1 Salmonella enterica strain PNUSAS396670 SAMN38039605-rid20020983.guided.22, whole genome shotgun sequence	3573..4010	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOLIG010000015.1 Salmonella enterica strain PNUSAS396670 SAMN38039605-rid20020983.denovo.15, whole genome shotgun sequence	34957..35490																																																						avrA	ABOLIG010000002.1	573166..574034	99.425	870	0						
GCA_033147675.1_PDT001962531.1_genomic.fna	Salmonella_enterica	0.5215	250.511 KB	5	aroC_61,dnaN_12,hemD_10,hisD_65,purE_54,sucA_63,thrA_57	150	8:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_61	dnaN	100	100	dnaN_12	hemD	100	100	hemD_10	hisD	100	100	hisD_65	purE	100	100	purE_54	sucA	100	100	sucA_63	thrA	100	100	thrA_57	8	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bovismorbificans		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.32	438/438	ABOLIH010000001.1 Salmonella enterica strain PNUSAS396658 SAMN38039599-rid20020973.denovo.01, whole genome shotgun sequence	346929..347366	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOLIH010000034.1 Salmonella enterica strain PNUSAS396658 SAMN38039599-rid20020973.guided.24, whole genome shotgun sequence	1148..1585	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLIH010000003.1	150551..151420	99.54	870	0						
GCA_033147795.1_PDT001962524.1_genomic.fna	Salmonella_enterica	0.5214	412.335 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLIM010000001.1 Salmonella enterica strain PNUSAS396637 SAMN38039512-rid20020923.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLIM010000029.1 Salmonella enterica strain PNUSAS396637 SAMN38039512-rid20020923.guided.23, whole genome shotgun sequence	8590..9027	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLIM010000021.1 Salmonella enterica strain PNUSAS396637 SAMN38039512-rid20020923.denovo.22, whole genome shotgun sequence	6826..7468	enterobacteriales	IncFII(S)	100	262 / 262	ABOLIM010000018.1 Salmonella enterica strain PNUSAS396637 SAMN38039512-rid20020923.denovo.18, whole genome shotgun sequence	5032..5293																																																avrA	ABOLIM010000006.1	174786..175655	99.54	870	0						
GCA_033147835.1_PDT001962514.1_genomic.fna	Salmonella_enterica	0.521	287.69 KB	6	aroC_46,dnaN_122,hemD_3,hisD_18,purE_6,sucA_138,thrA_133	404	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_122	hemD	100	100	hemD_3	hisD	100	100	hisD_18	purE	100	100	purE_6	sucA	100	100	sucA_138	thrA	100	100	thrA_133	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLIW010000011.1 Salmonella enterica strain PNUSAS396663 SAMN38039609-rid20020853.denovo.11, whole genome shotgun sequence	37875..38312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLIW010000054.1 Salmonella enterica strain PNUSAS396663 SAMN38039609-rid20020853.guided.24, whole genome shotgun sequence	19117..19554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOLIW010000020.1 Salmonella enterica strain PNUSAS396663 SAMN38039609-rid20020853.denovo.20, whole genome shotgun sequence	34957..35490																																																						avrA	ABOLIW010000003.1	39468..40334	98.966	870	0						
GCA_033147915.1_PDT001962520.1_genomic.fna	Salmonella_enterica	0.522	335.893 KB	5	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLIQ010000002.1 Salmonella enterica strain PNUSAS396672 SAMN38039595-rid20020053.denovo.02, whole genome shotgun sequence	517922..518359	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLIQ010000030.1 Salmonella enterica strain PNUSAS396672 SAMN38039595-rid20020053.guided.17, whole genome shotgun sequence	26796..27233	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLIQ010000001.1	183078..183947	98.966	870	0						
GCA_033147955.1_PDT001962521.1_genomic.fna	Salmonella_enterica	0.5187	365.491 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOLIP010000001.1 Salmonella enterica strain PNUSAS396549 SAMN38038927-rid20020893.denovo.01, whole genome shotgun sequence	486112..486549	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOLIP010000040.1 Salmonella enterica strain PNUSAS396549 SAMN38038927-rid20020893.guided.28, whole genome shotgun sequence	12507..12944	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOLIP010000004.1 Salmonella enterica strain PNUSAS396549 SAMN38038927-rid20020893.denovo.04, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOLIP010000038.1 Salmonella enterica strain PNUSAS396549 SAMN38038927-rid20020893.guided.26, whole genome shotgun sequence	16878..17300	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLIP010000002.1	150596..151465	99.195	870	0						
GCA_033147975.1_PDT001962517.1_genomic.fna	Salmonella_enterica	0.521	306.648 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLIU010000001.1 Salmonella enterica strain PNUSAS396636 SAMN38039510-rid20020873.denovo.01, whole genome shotgun sequence	293268..293705	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLIU010000030.1 Salmonella enterica strain PNUSAS396636 SAMN38039510-rid20020873.guided.22, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLIU010000021.1 Salmonella enterica strain PNUSAS396636 SAMN38039510-rid20020873.denovo.23, whole genome shotgun sequence	6820..7462	enterobacteriales	IncFII(S)	100	262 / 262	ABOLIU010000018.1 Salmonella enterica strain PNUSAS396636 SAMN38039510-rid20020873.denovo.19, whole genome shotgun sequence	4260..4521																																																avrA	ABOLIU010000002.1	585285..586154	99.54	870	0						
GCA_033148015.1_PDT001962515.1_genomic.fna	Salmonella_enterica	0.5223	613.233 KB	3	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOLIV010000001.1 Salmonella enterica strain PNUSAS396634 SAMN38039513-rid20020033.denovo.01, whole genome shotgun sequence	645018..645455	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOLIV010000021.1 Salmonella enterica strain PNUSAS396634 SAMN38039513-rid20020033.guided.16, whole genome shotgun sequence	346..783	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLIV010000002.1	561772..562642	99.656	871	0						
GCA_033148035.1_PDT001962512.1_genomic.fna	Salmonella_enterica	0.5199	223.912 KB	7	aroC_10,dnaN_129,hemD_18,hisD_153,purE_8,sucA_9,thrA_22	1612	7:y:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_129	hemD	100	100	hemD_18	hisD	100	100	hisD_153	purE	100	100	purE_8	sucA	100	100	sucA_9	thrA	100	100	thrA_22	7	y	1,5	Salmonella enterica subspecies enterica (subspecies I)	Bareilly		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOLIY010000006.1 Salmonella enterica strain PNUSAS396661 SAMN38039606-rid20020843.denovo.06, whole genome shotgun sequence	136899..137336	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOLIY010000055.1 Salmonella enterica strain PNUSAS396661 SAMN38039606-rid20020843.guided.42, whole genome shotgun sequence	660..1097	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	93.31	643 / 643	ABOLIY010000019.1 Salmonella enterica strain PNUSAS396661 SAMN38039606-rid20020843.denovo.19, whole genome shotgun sequence	2598..3240																																																																	
GCA_033148055.1_PDT001962510.1_genomic.fna	Salmonella_enterica	0.5202	310.938 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		4	ColRNAI,IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLJA010000001.1 Salmonella enterica strain PNUSAS396667 SAMN38039600-rid20020013.denovo.01, whole genome shotgun sequence	293265..293702	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLJA010000041.1 Salmonella enterica strain PNUSAS396667 SAMN38039600-rid20020013.guided.23, whole genome shotgun sequence	18646..19083	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	ColRNAI	90.08	131 / 130	ABOLJA010000029.1 Salmonella enterica strain PNUSAS396667 SAMN38039600-rid20020013.denovo.32, whole genome shotgun sequence	4022..4152	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLJA010000022.1 Salmonella enterica strain PNUSAS396667 SAMN38039600-rid20020013.denovo.22, whole genome shotgun sequence	34372..35014		enterobacteriales	IncFII(S)	100	262 / 262	ABOLJA010000028.1 Salmonella enterica strain PNUSAS396667 SAMN38039600-rid20020013.denovo.31, whole genome shotgun sequence	4118..4379		enterobacteriales	IncX1	98.66	374 / 374	ABOLJA010000026.1 Salmonella enterica strain PNUSAS396667 SAMN38039600-rid20020013.denovo.28, whole genome shotgun sequence	13153..13526																																		avrA	ABOLJA010000006.1	175079..175948	99.54	870	0						
GCA_033148075.1_PDT001962511.1_genomic.fna	Salmonella_enterica	0.5208	185.71 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	8	aac(6')-Iaa,aadA2,aadA1,aac(6')-Iaa,aadA2,aadA1,cmlA1,floR,cmlA1,cmlA1,floR,sul2,sul2,tet(M),tet(M),dfrA12,dfrA12	0		3	IncFIB(AP001918),IncFIC(FII),IncI1-I(Alpha)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLIZ010000001.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.denovo.01, whole genome shotgun sequence	115024..115461	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOLIZ010000043.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.denovo.46, whole genome shotgun sequence	7095..7886	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOLIZ010000043.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.denovo.46, whole genome shotgun sequence	4690..5481	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABOLIZ010000069.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.guided.41, whole genome shotgun sequence	4163..4600	Amikacin, Tobramycin	NC_003197	aadA2	100	792/792	ABOLIZ010000071.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.guided.50, whole genome shotgun sequence	6042..6833	Spectinomycin, Streptomycin	JQ364967	aadA1	100	792/792	ABOLIZ010000072.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.guided.51, whole genome shotgun sequence	1808..2599	Spectinomycin, Streptomycin	JQ414041	cmlA1	99.92	1260/1260	ABOLIZ010000043.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.denovo.46, whole genome shotgun sequence	5574..6833	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOLIZ010000051.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.denovo.56, whole genome shotgun sequence	1356..2569	Chloramphenicol, Florfenicol	AF118107	cmlA1	99.92	1260/1260	ABOLIZ010000071.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.guided.50, whole genome shotgun sequence	7095..8354	Chloramphenicol	M64556	cmlA1	99.92	1260/1260	ABOLIZ010000072.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.guided.51, whole genome shotgun sequence	456..1715	Chloramphenicol	M64556	floR	98.11	1214/1215	ABOLIZ010000073.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.guided.57, whole genome shotgun sequence	937..2150	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOLIZ010000052.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.denovo.59, whole genome shotgun sequence	329..1144	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOLIZ010000074.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.guided.58, whole genome shotgun sequence	1897..2712	Sulfamethoxazole	AY034138	tet(M)	96.15	1920/1920	ABOLIZ010000043.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.denovo.46, whole genome shotgun sequence	843..2762	Doxycycline, Tetracycline, Minocycline	X04388	tet(M)	96.15	1920/1920	ABOLIZ010000072.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.guided.51, whole genome shotgun sequence	4527..6446	Doxycycline, Tetracycline, Minocycline	X04388	dfrA12	100	498/498	ABOLIZ010000043.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.denovo.46, whole genome shotgun sequence	8294..8791	Trimethoprim	AM040708	dfrA12	100	498/498	ABOLIZ010000071.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.guided.50, whole genome shotgun sequence	5137..5634	Trimethoprim	AM040708																																																																																																																																																																																																																																																																																																																																																																					enterobacteriales	IncFIB(AP001918)	97.65	682 / 682	ABOLIZ010000042.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.denovo.44, whole genome shotgun sequence	14009..14690	enterobacteriales	IncFIC(FII)	94	500 / 499	ABOLIZ010000032.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.denovo.32, whole genome shotgun sequence	32444..32940		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOLIZ010000035.1 Salmonella enterica strain PNUSAS396669 SAMN38039608-rid20020833.denovo.36, whole genome shotgun sequence	14221..14362																																									avrA	ABOLIZ010000010.1	94139..95007	99.77	870	0						
GCA_033148095.1_PDT001962508.1_genomic.fna	Salmonella_enterica	0.5214	284.004 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLJD010000001.1 Salmonella enterica strain PNUSAS396635 SAMN38039511-rid20020003.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLJD010000033.1 Salmonella enterica strain PNUSAS396635 SAMN38039511-rid20020003.guided.24, whole genome shotgun sequence	8117..8554	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLJD010000019.1 Salmonella enterica strain PNUSAS396635 SAMN38039511-rid20020003.denovo.19, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOLJD010000024.1 Salmonella enterica strain PNUSAS396635 SAMN38039511-rid20020003.denovo.27, whole genome shotgun sequence	3407..3668																																																avrA	ABOLJD010000002.1	553077..553946	99.54	870	0						
GCA_033148115.1_PDT001962416.1_genomic.fna	Salmonella_enterica	0.5212	696.122 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLJC010000001.1 Salmonella enterica strain PNUSAS396511 SAMN38038912-rid20019763.denovo.01, whole genome shotgun sequence	643804..644241	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLJC010000021.1 Salmonella enterica strain PNUSAS396511 SAMN38038912-rid20019763.guided.14, whole genome shotgun sequence	12428..12865	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033148135.1_PDT001962414.1_genomic.fna	Salmonella_enterica	0.5212	489.665 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLJE010000001.1 Salmonella enterica strain PNUSAS396527 SAMN38038924-rid20019743.denovo.01, whole genome shotgun sequence	815089..815526	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLJE010000023.1 Salmonella enterica strain PNUSAS396527 SAMN38038924-rid20019743.guided.17, whole genome shotgun sequence	5637..6074	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLJE010000012.1 Salmonella enterica strain PNUSAS396527 SAMN38038924-rid20019743.denovo.12, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOLJE010000012.1 Salmonella enterica strain PNUSAS396527 SAMN38038924-rid20019743.denovo.12, whole genome shotgun sequence	4416..4677																																																avrA	ABOLJE010000002.1	584148..585017	99.54	870	0						
GCA_033148175.1_PDT001962412.1_genomic.fna	Salmonella_enterica	0.5209	363.544 KB	5	aroC_5,dnaN_2,hemD_3,hisD_6,purE_5,sucA_5,thrA_10	10	9:g,p:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaCMY-2,blaCMY-2,floR,floR,sul2,sul2,tet(A),tet(A)	1	gyrA_p.D87N	3	IncC,IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_6	purE	100	100	purE_5	sucA	100	100	sucA_5	thrA	100	100	thrA_10	9	g,p	-	Salmonella enterica subspecies enterica (subspecies I)	Dublin		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLJF010000001.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.denovo.01, whole genome shotgun sequence	805530..805967	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLJF010000021.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.denovo.22, whole genome shotgun sequence	20873..21709	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOLJF010000021.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.denovo.22, whole genome shotgun sequence	20070..20873	Streptomycin	AF321551	aph(3')-Ia	100	807/816	ABOLJF010000022.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.denovo.24, whole genome shotgun sequence	1..807	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	aac(6')-Iaa	98.63	438/438	ABOLJF010000038.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.guided.25, whole genome shotgun sequence	10660..11097	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLJF010000039.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.guided.29, whole genome shotgun sequence	850..1686	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOLJF010000039.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.guided.29, whole genome shotgun sequence	47..850	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOLJF010000043.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.guided.36, whole genome shotgun sequence	129..944	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	V00359	blaCMY-2	100	1146/1146	ABOLJF010000023.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.denovo.26, whole genome shotgun sequence	9020..10165	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	blaCMY-2	100	1146/1146	ABOLJF010000042.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.guided.34, whole genome shotgun sequence	327..1472	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	floR	98.19	1214/1215	ABOLJF010000026.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.denovo.30, whole genome shotgun sequence	327..1540	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOLJF010000040.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.guided.32, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOLJF010000021.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.denovo.22, whole genome shotgun sequence	19194..20009	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOLJF010000041.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.guided.33, whole genome shotgun sequence	1570..2385	Sulfamethoxazole	AY034138	tet(A)	100	1275/1275	ABOLJF010000021.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.denovo.22, whole genome shotgun sequence	22970..24244	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOLJF010000039.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.guided.29, whole genome shotgun sequence	2947..4221	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553																enterobacteriales	IncC	100	417 / 417	ABOLJF010000018.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.denovo.19, whole genome shotgun sequence	11688..12104	enterobacteriales	IncFII(S)	97.71	262 / 262	ABOLJF010000015.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.denovo.15, whole genome shotgun sequence	16913..17172		enterobacteriales	IncX1	98.66	374 / 374	ABOLJF010000015.1 Salmonella enterica strain PNUSAS396507 SAMN38038909-rid20019723.denovo.15, whole genome shotgun sequence	52767..53140																																									avrA	ABOLJF010000006.1	173549..174417	99.54	870	0						
GCA_033148275.1_PDT001962407.1_genomic.fna	Salmonella_enterica	0.5223	389.432 KB	6	aroC_84,dnaN_11,hemD_16,hisD_42,purE_40,sucA_71,thrA_4	516	3,10:l,v:1,7	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_84	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_42	purE	100	100	purE_40	sucA	100	100	sucA_71	thrA	100	100	thrA_4	3,10	l,v	1,7	Salmonella enterica subspecies enterica (subspecies I)	Give		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLJL010000003.1 Salmonella enterica strain PNUSAS396554 SAMN38038921-rid20019673.denovo.03, whole genome shotgun sequence	38308..38745	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLJL010000026.1 Salmonella enterica strain PNUSAS396554 SAMN38038921-rid20019673.guided.22, whole genome shotgun sequence	6146..6583	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLJL010000008.1	151438..152307	98.966	870	0						
GCA_033148295.1_PDT001962401.1_genomic.fna	Salmonella_enterica	0.5225	84.998 KB	18	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLJK010000054.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326041 SAMN38040055-rid20013343.denovo.054, whole genome shotgun sequence	11351..11788	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOLJK010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326041 SAMN38040055-rid20013343.denovo.060, whole genome shotgun sequence	18497..19288	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLJK010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326041 SAMN38040055-rid20013343.denovo.060, whole genome shotgun sequence	18497..19288	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOLJK010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326041 SAMN38040055-rid20013343.guided.059, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLJK010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326041 SAMN38040055-rid20013343.guided.059, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOLJK010000136.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326041 SAMN38040055-rid20013343.guided.065, whole genome shotgun sequence	14158..14595	Amikacin, Tobramycin	NC_003197	sul1	100	840/840	ABOLJK010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326041 SAMN38040055-rid20013343.denovo.060, whole genome shotgun sequence	17153..17992	Sulfamethoxazole	U12338	sul1	100	840/840	ABOLJK010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326041 SAMN38040055-rid20013343.guided.059, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOLJK010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326041 SAMN38040055-rid20013343.denovo.060, whole genome shotgun sequence	3437..4636	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOLJK010000135.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326041 SAMN38040055-rid20013343.guided.059, whole genome shotgun sequence	15910..17109	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOLJK010000056.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326041 SAMN38040055-rid20013343.denovo.056, whole genome shotgun sequence	9109..9668																																																						avrA	ABOLJK010000001.1	39526..40395	99.655	870	0						
GCA_033148315.1_PDT001962400.1_genomic.fna	Salmonella_enterica	0.5205	61.905 KB	25	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	4	IncFIB(AP001918),IncFII,IncFII,IncI1-I(Alpha),IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLJM010000020.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326044 SAMN38040058-rid20016303.denovo.020, whole genome shotgun sequence	52165..52602	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLJM010000111.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326044 SAMN38040058-rid20016303.denovo.114, whole genome shotgun sequence	2715..3551	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOLJM010000111.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326044 SAMN38040058-rid20016303.denovo.114, whole genome shotgun sequence	3551..4354	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOLJM010000200.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326044 SAMN38040058-rid20016303.guided.082, whole genome shotgun sequence	16446..16883	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLJM010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326044 SAMN38040058-rid20016303.guided.117, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOLJM010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326044 SAMN38040058-rid20016303.guided.117, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOLJM010000131.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326044 SAMN38040058-rid20016303.denovo.135, whole genome shotgun sequence	2279..3484	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOLJM010000203.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326044 SAMN38040058-rid20016303.guided.145, whole genome shotgun sequence	1576..2781	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOLJM010000127.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326044 SAMN38040058-rid20016303.denovo.131, whole genome shotgun sequence	1340..2021	enterobacteriales	IncFII	96.95	262 / 261	ABOLJM010000111.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326044 SAMN38040058-rid20016303.denovo.114, whole genome shotgun sequence	1831..2092		enterobacteriales	IncFII	96.95	262 / 261	ABOLJM010000202.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326044 SAMN38040058-rid20016303.guided.117, whole genome shotgun sequence	4572..4833		enterobacteriales	IncI1-I(Alpha)	97.89	142 / 142	ABOLJM010000102.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326044 SAMN38040058-rid20016303.denovo.105, whole genome shotgun sequence	4983..5124		enterobacteriales	IncX1	100	373 / 373	ABOLJM010000144.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326044 SAMN38040058-rid20016303.denovo.149, whole genome shotgun sequence	2153..2525																											avrA	ABOLJM010000039.1	39604..40473	99.655	870	0						
GCA_033148335.1_PDT001962399.1_genomic.fna	Salmonella_enterica	0.5219	81.625 KB	20	aroC_92,dnaN_125,hemD_78,hisD_128,purE_138,sucA_9,thrA_141	463	-:e,h:l,w	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_92	dnaN	100	100	dnaN_125	hemD	100	100	hemD_78	hisD	100	100	hisD_128	purE	100	100	purE_138	sucA	100	100	sucA_9	thrA	100	100	thrA_141	-	e,h	l,w	Salmonella enterica subspecies enterica (subspecies I)	I -:e,h:l,w	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.86	438/438	ABOLJN010000023.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12326043 SAMN38040057-rid20013333.denovo.023, whole genome shotgun sequence	20887..21324	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.86	438/438	ABOLJN010000124.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12326043 SAMN38040057-rid20013333.guided.070, whole genome shotgun sequence	5094..5531	Amikacin, Tobramycin	NC_003197	fosA7	96.45	423/423	ABOLJN010000007.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12326043 SAMN38040057-rid20013333.denovo.007, whole genome shotgun sequence	95761..96183	Fosfomycin	LAPJ01000014	fosA7	96.45	423/423	ABOLJN010000123.1 Salmonella enterica subsp. enterica serovar Meleagridis strain FSIS12326043 SAMN38040057-rid20013333.guided.057, whole genome shotgun sequence	21554..21976	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLJN010000005.1	61705..62574	98.851	870	0						
GCA_033148355.1_PDT001962397.1_genomic.fna	Salmonella_enterica	0.5231	88.937 KB	18	aroC_13,dnaN_131,hemD_49,hisD_157,purE_12,sucA_13,thrA_4	471	-:b:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col(pHAD28),Col(pHAD28),Col(pHAD28)	aroC	100	100	aroC_13	dnaN	100	100	dnaN_131	hemD	100	100	hemD_49	hisD	100	100	hisD_157	purE	100	100	purE_12	sucA	100	100	sucA_13	thrA	100	100	thrA_4	-	b	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	I -:b:e,n,x	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOLJQ010000001.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12326039 SAMN38040060-rid20015103.denovo.001, whole genome shotgun sequence	11307..11744	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOLJQ010000114.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12326039 SAMN38040060-rid20015103.guided.063, whole genome shotgun sequence	8792..9229	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOLJQ010000080.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12326039 SAMN38040060-rid20015103.denovo.083, whole genome shotgun sequence	3134..3264	enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOLJQ010000083.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12326039 SAMN38040060-rid20015103.denovo.086, whole genome shotgun sequence	557..687		enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOLJQ010000084.1 Salmonella enterica subsp. enterica serovar Johannesburg strain FSIS12326039 SAMN38040060-rid20015103.denovo.087, whole genome shotgun sequence	186..316																																									avrA	ABOLJQ010000026.1	61529..62398	99.425	870	0						
GCA_033148375.1_PDT001962398.1_genomic.fna	Salmonella_enterica	0.52	82.042 KB	20	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	4	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,tet(B),tet(B)	1	parC_p.T57S	3	IncFIB(AP001918),IncFII,IncFII,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLJP010000003.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326040 SAMN38040061-rid20018653.denovo.003, whole genome shotgun sequence	163875..164312	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLJP010000034.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326040 SAMN38040061-rid20018653.denovo.034, whole genome shotgun sequence	49560..50396	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOLJP010000034.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326040 SAMN38040061-rid20018653.denovo.034, whole genome shotgun sequence	50396..51199	Streptomycin	AF321551	aac(6')-Iaa	97.95	438/438	ABOLJP010000134.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326040 SAMN38040061-rid20018653.guided.071, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLJP010000135.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326040 SAMN38040061-rid20018653.guided.092, whole genome shotgun sequence	3113..3949	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOLJP010000135.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326040 SAMN38040061-rid20018653.guided.092, whole genome shotgun sequence	2310..3113	Streptomycin	AF321551	tet(B)	100	1206/1206	ABOLJP010000091.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326040 SAMN38040061-rid20018653.denovo.095, whole genome shotgun sequence	390..1595	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOLJP010000136.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326040 SAMN38040061-rid20018653.guided.102, whole genome shotgun sequence	2318..3523	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOLJP010000094.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326040 SAMN38040061-rid20018653.denovo.098, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFII	96.95	262 / 261	ABOLJP010000034.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326040 SAMN38040061-rid20018653.denovo.034, whole genome shotgun sequence	48676..48937		enterobacteriales	IncFII	96.95	262 / 261	ABOLJP010000135.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326040 SAMN38040061-rid20018653.guided.092, whole genome shotgun sequence	4572..4833		enterobacteriales	IncX1	100	373 / 373	ABOLJP010000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326040 SAMN38040061-rid20018653.denovo.087, whole genome shotgun sequence	2153..2525																																		avrA	ABOLJP010000041.1	39484..40353	99.655	870	0						
GCA_033148385.1_PDT001962395.1_genomic.fna	Salmonella_enterica	0.5218	35.615 KB	40	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	-:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	3	Col(pHAD28),IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	I -:d:1,7	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLJR010000016.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.denovo.016, whole genome shotgun sequence	12508..12945	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOLJR010000080.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.denovo.081, whole genome shotgun sequence	6054..6856	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOLJR010000080.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.denovo.081, whole genome shotgun sequence	6054..6857	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOLJR010000080.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.denovo.081, whole genome shotgun sequence	6054..6857	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOLJR010000080.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.denovo.081, whole genome shotgun sequence	6054..6857	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOLJR010000080.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.denovo.081, whole genome shotgun sequence	5314..6054	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOLJR010000080.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.denovo.081, whole genome shotgun sequence	5314..6054	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABOLJR010000282.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.guided.119, whole genome shotgun sequence	5222..5659	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOLJR010000284.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.guided.141, whole genome shotgun sequence	2617..3419	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOLJR010000284.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.guided.141, whole genome shotgun sequence	2616..3419	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOLJR010000284.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.guided.141, whole genome shotgun sequence	2616..3419	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOLJR010000284.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.guided.141, whole genome shotgun sequence	2616..3419	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOLJR010000284.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.guided.141, whole genome shotgun sequence	3419..4159	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOLJR010000284.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.guided.141, whole genome shotgun sequence	3419..4159	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	93.02	129 / 131	ABOLJR010000198.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.denovo.202, whole genome shotgun sequence	1391..1519	enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOLJR010000165.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.denovo.169, whole genome shotgun sequence	1834..2515		enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABOLJR010000044.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326042 SAMN38040056-rid20017623.denovo.044, whole genome shotgun sequence	4946..5442																																									avrA	ABOLJR010000029.1	43665..44534	98.966	870	0						
GCA_033148895.1_PDT001962366.1_genomic.fna	Salmonella_enterica	0.5225	55.747 KB	26	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	6	aac(6')-Iaa,aadA1,aadA1,aadA1,aadA1,aac(6')-Iaa,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLKN010000059.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326032 SAMN38039457-rid20018583.denovo.059, whole genome shotgun sequence	14119..14556	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOLKN010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326032 SAMN38039457-rid20018583.denovo.065, whole genome shotgun sequence	22770..23561	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLKN010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326032 SAMN38039457-rid20018583.denovo.065, whole genome shotgun sequence	22770..23561	Spectinomycin, Streptomycin	JQ414041	aadA1	99.75	792/792	ABOLKN010000172.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326032 SAMN38039457-rid20018583.guided.131, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLKN010000172.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326032 SAMN38039457-rid20018583.guided.131, whole genome shotgun sequence	1097..1888	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOLKN010000173.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326032 SAMN38039457-rid20018583.guided.135, whole genome shotgun sequence	2667..3104	Amikacin, Tobramycin	NC_003197	blaCTX-M-65	100	876/876	ABOLKN010000124.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326032 SAMN38039457-rid20018583.denovo.128, whole genome shotgun sequence	943..1818	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOLKN010000171.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326032 SAMN38039457-rid20018583.guided.127, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABOLKN010000129.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326032 SAMN38039457-rid20018583.denovo.134, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABOLKN010000174.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326032 SAMN38039457-rid20018583.guided.154, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABOLKN010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326032 SAMN38039457-rid20018583.denovo.065, whole genome shotgun sequence	21426..22265	Sulfamethoxazole	U12338	sul1	100	840/840	ABOLKN010000172.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326032 SAMN38039457-rid20018583.guided.131, whole genome shotgun sequence	2393..3232	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOLKN010000065.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326032 SAMN38039457-rid20018583.denovo.065, whole genome shotgun sequence	7710..8909	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOLKN010000170.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326032 SAMN38039457-rid20018583.guided.117, whole genome shotgun sequence	1859..3058	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																						gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOLKN010000087.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326032 SAMN38039457-rid20018583.denovo.087, whole genome shotgun sequence	14634..15193																																																						avrA	ABOLKN010000003.1	105687..106556	99.655	870	0						
GCA_033148915.1_PDT001962365.1_genomic.fna	Salmonella_enterica	0.5219	76.503 KB	18	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	3	aac(6')-Iaa,aac(6')-Iaa,sul2,sul2,tet(A),tet(A)	0		1	Col(pHAD28)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLKP010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326034 SAMN38039459-rid20017593.denovo.001, whole genome shotgun sequence	154512..154949	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLKP010000126.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326034 SAMN38039459-rid20017593.guided.095, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197	sul2	100	816/816	ABOLKP010000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326034 SAMN38039459-rid20017593.denovo.026, whole genome shotgun sequence	21682..22497	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOLKP010000123.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326034 SAMN38039459-rid20017593.guided.064, whole genome shotgun sequence	21722..22537	Sulfamethoxazole	AY034138	tet(A)	100	1200/1200	ABOLKP010000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326034 SAMN38039459-rid20017593.denovo.026, whole genome shotgun sequence	24674..25873	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOLKP010000125.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326034 SAMN38039459-rid20017593.guided.091, whole genome shotgun sequence	1094..2293	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																																																		enterobacteriales	Col(pHAD28)	95.42	131 / 131	ABOLKP010000098.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FSIS12326034 SAMN38039459-rid20017593.denovo.102, whole genome shotgun sequence	371..501																																																						avrA	ABOLKP010000005.1	105584..106453	99.885	870	0						
GCA_033148935.1_PDT001962364.1_genomic.fna	Salmonella_enterica	0.5217	155.571 KB	8	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	4	aac(6')-Iaa,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,sul1,sul1,tet(A),tet(A)	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLKO010000003.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326037 SAMN38039462-rid20011673.denovo.03, whole genome shotgun sequence	232615..233052	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOLKO010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326037 SAMN38039462-rid20011673.denovo.41, whole genome shotgun sequence	22843..23634	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLKO010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326037 SAMN38039462-rid20011673.denovo.41, whole genome shotgun sequence	22843..23634	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOLKO010000079.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326037 SAMN38039462-rid20011673.guided.29, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOLKO010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326037 SAMN38039462-rid20011673.guided.55, whole genome shotgun sequence	181..972	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLKO010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326037 SAMN38039462-rid20011673.guided.55, whole genome shotgun sequence	181..972	Spectinomycin, Streptomycin	JQ414041	sul1	100	840/840	ABOLKO010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326037 SAMN38039462-rid20011673.denovo.41, whole genome shotgun sequence	21499..22338	Sulfamethoxazole	U12338	sul1	100	840/840	ABOLKO010000082.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326037 SAMN38039462-rid20011673.guided.55, whole genome shotgun sequence	1477..2316	Sulfamethoxazole	U12338	tet(A)	99.92	1200/1200	ABOLKO010000038.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326037 SAMN38039462-rid20011673.denovo.41, whole genome shotgun sequence	7783..8982	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOLKO010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326037 SAMN38039462-rid20011673.guided.38, whole genome shotgun sequence	7358..8557	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																		gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOLKO010000042.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326037 SAMN38039462-rid20011673.denovo.45, whole genome shotgun sequence	8909..9468																																																						avrA	ABOLKO010000002.1	124370..125239	99.655	870	0						
GCA_033148955.1_PDT001962361.1_genomic.fna	Salmonella_enterica	0.5224	82.572 KB	18	aroC_14,dnaN_112,hemD_43,hisD_123,purE_118,sucA_115,thrA_120	367	18:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	3	Col(pHAD28),Col(pHAD28),Col440I,IncI1-I(Alpha)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_112	hemD	100	100	hemD_43	hisD	100	100	hisD_123	purE	100	100	purE_118	sucA	100	100	sucA_115	thrA	100	100	thrA_120	18	z4,z23	-	Salmonella enterica subspecies enterica (subspecies I)	Cerro		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.03	438/438	ABOLKS010000025.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12326036 SAMN38039461-rid20011663.denovo.025, whole genome shotgun sequence	53293..53730	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.03	438/438	ABOLKS010000101.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12326036 SAMN38039461-rid20011663.guided.054, whole genome shotgun sequence	8017..8454	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABOLKS010000080.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12326036 SAMN38039461-rid20011663.denovo.083, whole genome shotgun sequence	638..766	enterobacteriales	Col(pHAD28)	93.13	131 / 131	ABOLKS010000087.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12326036 SAMN38039461-rid20011663.denovo.090, whole genome shotgun sequence	1703..1833		enterobacteriales	Col440I	91.74	109 / 114	ABOLKS010000084.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12326036 SAMN38039461-rid20011663.denovo.087, whole genome shotgun sequence	2246..2354		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOLKS010000076.1 Salmonella enterica subsp. enterica serovar Cerro strain FSIS12326036 SAMN38039461-rid20011663.denovo.079, whole genome shotgun sequence	1927..2068																																		avrA	ABOLKS010000005.1	145400..146269	99.425	870	0						
GCA_033148975.1_PDT001962363.1_genomic.fna	Salmonella_enterica	0.5216	73.378 KB	22	aroC_43,dnaN_47,hemD_49,hisD_49,purE_41,sucA_15,thrA_3	96	4:d:1,7	3	aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id,aac(6')-Iaa,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(6)-Id	1	parC_p.T57S	2	IncFIB(AP001918),IncFIC(FII)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_49	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	4	d	1,7	Salmonella enterica subspecies enterica (subspecies I)	Schwarzengrund		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLKQ010000003.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326029 SAMN38039444-rid20017583.denovo.003, whole genome shotgun sequence	90757..91194	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOLKQ010000068.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326029 SAMN38039444-rid20017583.denovo.070, whole genome shotgun sequence	6052..6854	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOLKQ010000068.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326029 SAMN38039444-rid20017583.denovo.070, whole genome shotgun sequence	6052..6855	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOLKQ010000068.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326029 SAMN38039444-rid20017583.denovo.070, whole genome shotgun sequence	6052..6855	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOLKQ010000068.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326029 SAMN38039444-rid20017583.denovo.070, whole genome shotgun sequence	6052..6855	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOLKQ010000068.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326029 SAMN38039444-rid20017583.denovo.070, whole genome shotgun sequence	5312..6052	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOLKQ010000068.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326029 SAMN38039444-rid20017583.denovo.070, whole genome shotgun sequence	5312..6052	Streptomycin	M28829	aac(6')-Iaa	97.95	438/438	ABOLKQ010000154.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326029 SAMN38039444-rid20017583.guided.058, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197	aph(3'')-Ib	100	803/804	ABOLKQ010000156.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326029 SAMN38039444-rid20017583.guided.093, whole genome shotgun sequence	2617..3419	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOLKQ010000156.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326029 SAMN38039444-rid20017583.guided.093, whole genome shotgun sequence	2616..3419	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOLKQ010000156.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326029 SAMN38039444-rid20017583.guided.093, whole genome shotgun sequence	2616..3419	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOLKQ010000156.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326029 SAMN38039444-rid20017583.guided.093, whole genome shotgun sequence	2616..3419	Streptomycin	AF321550	aph(6)-Id	100	741/837	ABOLKQ010000156.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326029 SAMN38039444-rid20017583.guided.093, whole genome shotgun sequence	3419..4159	Streptomycin	AF024602	aph(6)-Id	100	741/837	ABOLKQ010000156.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326029 SAMN38039444-rid20017583.guided.093, whole genome shotgun sequence	3419..4159	Streptomycin	M28829																																																																																																																																																																																																																																																																																																																																																																						parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(AP001918)	98.39	682 / 682	ABOLKQ010000098.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326029 SAMN38039444-rid20017583.denovo.102, whole genome shotgun sequence	1834..2515	enterobacteriales	IncFIC(FII)	95.79	499 / 499	ABOLKQ010000048.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain FSIS12326029 SAMN38039444-rid20017583.denovo.048, whole genome shotgun sequence	4946..5442																																																avrA	ABOLKQ010000019.1	79941..80810	98.966	870	0						
GCA_033148995.1_PDT001962362.1_genomic.fna	Salmonella_enterica	0.5217	115.746 KB	13	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	-:r:1,5	8	aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,aac(6')-Iaa,aadA1,aadA1,aph(3')-Ia,blaCTX-M-65,blaCTX-M-65,fosA3,fosA3,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	-	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	I -:r:1,5	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLKR010000001.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.denovo.001, whole genome shotgun sequence	477815..478252	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOLKR010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.denovo.042, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLKR010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.denovo.042, whole genome shotgun sequence	1217..2008	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOLKR010000086.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.denovo.095, whole genome shotgun sequence	92..907	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	aac(6')-Iaa	97.49	438/438	ABOLKR010000094.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.guided.030, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOLKR010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.guided.068, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLKR010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.guided.068, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(3')-Ia	100	816/816	ABOLKR010000102.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.guided.094, whole genome shotgun sequence	127..942	Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Unknown Aminoglycoside	X62115	blaCTX-M-65	100	876/876	ABOLKR010000073.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.denovo.078, whole genome shotgun sequence	960..1835	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	blaCTX-M-65	100	876/876	ABOLKR010000099.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.guided.079, whole genome shotgun sequence	941..1816	Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin	EF418608	fosA3	100	417/417	ABOLKR010000080.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.denovo.087, whole genome shotgun sequence	321..737	Fosfomycin	AB522970	fosA3	100	417/417	ABOLKR010000101.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.guided.091, whole genome shotgun sequence	362..778	Fosfomycin	AB522970	sul1	100	840/840	ABOLKR010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.denovo.042, whole genome shotgun sequence	2513..3352	Sulfamethoxazole	U12338	sul1	100	840/840	ABOLKR010000098.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.guided.068, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOLKR010000041.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.denovo.042, whole genome shotgun sequence	15869..17068	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOLKR010000097.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.guided.064, whole genome shotgun sequence	7352..8551	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOLKR010000070.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.denovo.075, whole genome shotgun sequence	1071..1544	Trimethoprim	AF393510	dfrA14	100	474/474	ABOLKR010000100.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.guided.085, whole genome shotgun sequence	1111..1584	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOLKR010000055.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS12326033 SAMN38039458-rid20015033.denovo.058, whole genome shotgun sequence	14638..15197																																																						avrA	ABOLKR010000011.1	39430..40299	99.655	870	0						
GCA_033149015.1_PDT001962360.1_genomic.fna	Salmonella_enterica	0.5233	59.513 KB	22	aroC_10,dnaN_14,hemD_15,hisD_31,purE_25,sucA_20,thrA_33	64	9,46:e,h:1,6	7	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,blaTEM-1A,blaTEM-1A,blaTEM-1A,floR,floR,sul2,sul2,sul2,tet(A),tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_10	dnaN	100	100	dnaN_14	hemD	100	100	hemD_15	hisD	100	100	hisD_31	purE	100	100	purE_25	sucA	100	100	sucA_20	thrA	100	100	thrA_33	9,46	e,h	1,6	Salmonella enterica subspecies enterica (subspecies I)	I 9,46:e,h:1,6	This predicted serotype is not in the Kauffman-White scheme.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.09	438/438	ABOLKT010000010.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.denovo.010, whole genome shotgun sequence	52517..52954	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLKT010000095.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.denovo.100, whole genome shotgun sequence	548..1384	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOLKT010000095.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.denovo.100, whole genome shotgun sequence	1384..2187	Streptomycin	AF321551	aac(6')-Iaa	99.09	438/438	ABOLKT010000136.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.guided.049, whole genome shotgun sequence	14137..14574	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLKT010000139.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.guided.098, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	ABOLKT010000139.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.guided.098, whole genome shotgun sequence	5879..6682	Streptomycin	AF321551	aph(6)-Id	100	837/837	ABOLKT010000140.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.guided.099, whole genome shotgun sequence	6682..7518	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOLKT010000140.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.guided.099, whole genome shotgun sequence	5879..6682	Streptomycin	AF321551	blaTEM-1A	100	861/861	ABOLKT010000095.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.denovo.100, whole genome shotgun sequence	3225..4085	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABOLKT010000139.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.guided.098, whole genome shotgun sequence	3981..4841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	blaTEM-1A	100	861/861	ABOLKT010000140.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.guided.099, whole genome shotgun sequence	3981..4841	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	HM749966	floR	98.19	1214/1215	ABOLKT010000074.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.denovo.075, whole genome shotgun sequence	628..1841	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOLKT010000142.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.guided.111, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	sul2	100	816/816	ABOLKT010000095.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.denovo.100, whole genome shotgun sequence	2248..3063	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOLKT010000139.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.guided.098, whole genome shotgun sequence	5003..5818	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOLKT010000140.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.guided.099, whole genome shotgun sequence	5003..5818	Sulfamethoxazole	AY034138	tet(A)	100	1240/1275	ABOLKT010000116.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.denovo.124, whole genome shotgun sequence	706..1945	Doxycycline, Tetracycline	AF534183	tet(A)	100	1200/1200	ABOLKT010000141.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.guided.105, whole genome shotgun sequence	788..1987	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1275/1275	ABOLKT010000143.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.guided.123, whole genome shotgun sequence	713..1987	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOLKT010000074.1 Salmonella enterica subsp. enterica serovar Anatum strain FSIS12326035 SAMN38039460-rid20017573.denovo.075, whole genome shotgun sequence	11449..11699																																																						avrA	ABOLKT010000009.1	105329..106198	99.54	870	0						
GCA_033149035.1_PDT001962358.1_genomic.fna	Salmonella_enterica	0.5209	162.554 KB	11	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLKU010000003.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325989 SAMN38039442-rid20017563.denovo.03, whole genome shotgun sequence	84881..85318	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLKU010000063.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325989 SAMN38039442-rid20017563.guided.42, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033149055.1_PDT001962356.1_genomic.fna	Salmonella_enterica	0.5186	60.899 KB	24	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLKW010000015.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326031 SAMN38039446-rid20018573.denovo.015, whole genome shotgun sequence	1027..1464	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLKW010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326031 SAMN38039446-rid20018573.denovo.051, whole genome shotgun sequence	4781..5617	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOLKW010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326031 SAMN38039446-rid20018573.denovo.051, whole genome shotgun sequence	3979..4781	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOLKW010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326031 SAMN38039446-rid20018573.denovo.051, whole genome shotgun sequence	3978..4781	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOLKW010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326031 SAMN38039446-rid20018573.denovo.051, whole genome shotgun sequence	3978..4781	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOLKW010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326031 SAMN38039446-rid20018573.denovo.051, whole genome shotgun sequence	3978..4781	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABOLKW010000197.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326031 SAMN38039446-rid20018573.guided.064, whole genome shotgun sequence	4074..4910	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOLKW010000197.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326031 SAMN38039446-rid20018573.guided.064, whole genome shotgun sequence	3272..4074	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOLKW010000197.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326031 SAMN38039446-rid20018573.guided.064, whole genome shotgun sequence	3271..4074	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOLKW010000197.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326031 SAMN38039446-rid20018573.guided.064, whole genome shotgun sequence	3271..4074	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOLKW010000197.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326031 SAMN38039446-rid20018573.guided.064, whole genome shotgun sequence	3271..4074	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABOLKW010000199.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326031 SAMN38039446-rid20018573.guided.093, whole genome shotgun sequence	9317..9754	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOLKW010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326031 SAMN38039446-rid20018573.denovo.041, whole genome shotgun sequence	23143..23469	enterobacteriales	IncHI2A	99.52	630 / 630	ABOLKW010000041.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326031 SAMN38039446-rid20018573.denovo.041, whole genome shotgun sequence	41453..42082		enterobacteriales	IncX1	100	373 / 373	ABOLKW010000152.1 Salmonella enterica subsp. enterica serovar Kentucky strain FSIS12326031 SAMN38039446-rid20018573.denovo.156, whole genome shotgun sequence	2218..2590																																									avrA	ABOLKW010000035.1	39489..40358	99.655	870	0						
GCA_033149075.1_PDT001962355.1_genomic.fna	Salmonella_enterica	0.5232	75.358 KB	21	aroC_347,dnaN_394,hemD_78,hisD_496,purE_426,sucA_9,thrA_102	1549	8:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	Col156	aroC	100	100	aroC_347	dnaN	100	100	dnaN_394	hemD	100	100	hemD_78	hisD	100	100	hisD_496	purE	100	100	purE_426	sucA	100	100	sucA_9	thrA	100	100	thrA_102	8	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Altona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLKX010000003.1 Salmonella enterica subsp. enterica serovar Altona strain FSIS12326030 SAMN38039445-rid20016263.denovo.003, whole genome shotgun sequence	40505..40942	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLKX010000128.1 Salmonella enterica subsp. enterica serovar Altona strain FSIS12326030 SAMN38039445-rid20016263.guided.069, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col156	98.03	152 / 154	ABOLKX010000099.1 Salmonella enterica subsp. enterica serovar Altona strain FSIS12326030 SAMN38039445-rid20016263.denovo.102, whole genome shotgun sequence	4652..4803																																																						avrA	ABOLKX010000057.1	22215..23084	99.195	870	0						
GCA_033149115.1_PDT001962357.1_genomic.fna	Salmonella_enterica	0.5219	174.489 KB	10	aroC_11,dnaN_10,hemD_13,hisD_264,purE_10,sucA_13,thrA_4	873	4:l,v:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_11	dnaN	100	100	dnaN_10	hemD	100	100	hemD_13	hisD	100	100	hisD_264	purE	100	100	purE_10	sucA	100	100	sucA_13	thrA	100	100	thrA_4	4	l,v	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Brandenburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLKV010000007.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325990 SAMN38039443-rid20013293.denovo.07, whole genome shotgun sequence	142066..142503	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLKV010000072.1 Salmonella enterica subsp. enterica serovar Brandenburg strain FSIS12325990 SAMN38039443-rid20013293.guided.48, whole genome shotgun sequence	16443..16880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033149135.1_PDT001962345.1_genomic.fna	Salmonella_enterica	0.5222	496.511 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLKZ010000001.1 Salmonella enterica strain PNUSAS396557 SAMN38038919-rid20016243.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLKZ010000024.1 Salmonella enterica strain PNUSAS396557 SAMN38038919-rid20016243.guided.20, whole genome shotgun sequence	619..1056	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLKZ010000002.1	202675..203544	98.966	870	0						
GCA_033149155.1_PDT001962344.1_genomic.fna	Salmonella_enterica	0.5195	368.134 KB	5	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	5	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7,floR,floR,qnrS1,qnrS1,tet(A),tet(A)	1	parC_p.T57S	1	IncR	aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLLA010000001.1 Salmonella enterica strain PNUSAS396541 SAMN38038928-rid20011623.denovo.01, whole genome shotgun sequence	486107..486544	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLLA010000044.1 Salmonella enterica strain PNUSAS396541 SAMN38038928-rid20011623.guided.11, whole genome shotgun sequence	44275..44712	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOLLA010000005.1 Salmonella enterica strain PNUSAS396541 SAMN38038928-rid20011623.denovo.05, whole genome shotgun sequence	27817..28239	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOLLA010000046.1 Salmonella enterica strain PNUSAS396541 SAMN38038928-rid20011623.guided.28, whole genome shotgun sequence	17849..18271	Fosfomycin	LAPJ01000014	floR	98.19	1214/1215	ABOLLA010000027.1 Salmonella enterica strain PNUSAS396541 SAMN38038928-rid20011623.denovo.31, whole genome shotgun sequence	8664..9877	Chloramphenicol, Florfenicol	AF118107	floR	98.19	1214/1215	ABOLLA010000049.1 Salmonella enterica strain PNUSAS396541 SAMN38038928-rid20011623.guided.34, whole genome shotgun sequence	2477..3690	Chloramphenicol, Florfenicol	AF118107	qnrS1	100	657/657	ABOLLA010000027.1 Salmonella enterica strain PNUSAS396541 SAMN38038928-rid20011623.denovo.31, whole genome shotgun sequence	1026..1682	Ciprofloxacin	AB187515	qnrS1	100	657/657	ABOLLA010000048.1 Salmonella enterica strain PNUSAS396541 SAMN38038928-rid20011623.guided.32, whole genome shotgun sequence	1067..1723	Ciprofloxacin	AB187515	tet(A)	100	1275/1275	ABOLLA010000027.1 Salmonella enterica strain PNUSAS396541 SAMN38038928-rid20011623.denovo.31, whole genome shotgun sequence	6789..8063	Doxycycline, Tetracycline	AF534183	tet(A)	100	1275/1275	ABOLLA010000048.1 Salmonella enterica strain PNUSAS396541 SAMN38038928-rid20011623.guided.32, whole genome shotgun sequence	6830..8104	Doxycycline, Tetracycline	AF534183																																																																																																																																																																																																																																																																																																																																																																																																		parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncR	100	251 / 251	ABOLLA010000026.1 Salmonella enterica strain PNUSAS396541 SAMN38038928-rid20011623.denovo.30, whole genome shotgun sequence	8313..8563																																																						avrA	ABOLLA010000002.1	151209..152078	99.195	870	0						
GCA_033149175.1_PDT001962343.1_genomic.fna	Salmonella_enterica	0.5209	478.497 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLLB010000001.1 Salmonella enterica strain PNUSAS396523 SAMN38038926-rid20016233.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLLB010000025.1 Salmonella enterica strain PNUSAS396523 SAMN38038926-rid20016233.guided.11, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLLB010000012.1 Salmonella enterica strain PNUSAS396523 SAMN38038926-rid20016233.denovo.14, whole genome shotgun sequence	40566..41208	enterobacteriales	IncFII(S)	100	262 / 262	ABOLLB010000016.1 Salmonella enterica strain PNUSAS396523 SAMN38038926-rid20016233.denovo.19, whole genome shotgun sequence	3446..3707																																																avrA	ABOLLB010000002.1	553499..554368	99.54	870	0						
GCA_033149195.1_PDT001962341.1_genomic.fna	Salmonella_enterica	0.5222	337.575 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLLD010000001.1 Salmonella enterica strain PNUSAS396538 SAMN38038925-rid20018553.denovo.01, whole genome shotgun sequence	573966..574403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOLLD010000030.1 Salmonella enterica strain PNUSAS396538 SAMN38038925-rid20018553.guided.16, whole genome shotgun sequence	13396..13833	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLLD010000002.1	149828..150697	99.655	870	0						
GCA_033149235.1_PDT001962340.1_genomic.fna	Salmonella_enterica	0.5225	226.08 KB	5	aroC_17,dnaN_2,hemD_10,hisD_166,purE_147,sucA_21,thrA_119	493	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_2	hemD	100	100	hemD_10	hisD	100	100	hisD_166	purE	100	100	purE_147	sucA	100	100	sucA_21	thrA	100	100	thrA_119	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLLE010000001.1 Salmonella enterica strain PNUSAS396524 SAMN38038923-rid20017533.denovo.01, whole genome shotgun sequence	358593..359030	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOLLE010000042.1 Salmonella enterica strain PNUSAS396524 SAMN38038923-rid20017533.guided.24, whole genome shotgun sequence	7876..8313	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOLLE010000002.1	149690..150559	99.655	870	0						
GCA_033149255.1_PDT001962339.1_genomic.fna	Salmonella_enterica	0.5218	222.474 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	5	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,sul2,sul2,tet(A),tet(A)	0		3	IncFIB(S),IncFII(S),IncQ1,IncQ1	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLLF010000001.1 Salmonella enterica strain PNUSAS396509 SAMN38038913-rid20011613.denovo.01, whole genome shotgun sequence	145390..145827	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLLF010000033.1 Salmonella enterica strain PNUSAS396509 SAMN38038913-rid20011613.denovo.37, whole genome shotgun sequence	9417..10253	Streptomycin	M28829	aph(3'')-Ib	100	780/804	ABOLLF010000033.1 Salmonella enterica strain PNUSAS396509 SAMN38038913-rid20011613.denovo.37, whole genome shotgun sequence	10253..11032	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOLLF010000048.1 Salmonella enterica strain PNUSAS396509 SAMN38038913-rid20011613.guided.33, whole genome shotgun sequence	6928..7365	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLLF010000050.1 Salmonella enterica strain PNUSAS396509 SAMN38038913-rid20011613.guided.36, whole genome shotgun sequence	8817..9653	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOLLF010000050.1 Salmonella enterica strain PNUSAS396509 SAMN38038913-rid20011613.guided.36, whole genome shotgun sequence	8014..8817	Streptomycin	AF321551	sul2	100	816/816	ABOLLF010000033.1 Salmonella enterica strain PNUSAS396509 SAMN38038913-rid20011613.denovo.37, whole genome shotgun sequence	85..900	Sulfamethoxazole	AY034138	sul2	100	816/816	ABOLLF010000050.1 Salmonella enterica strain PNUSAS396509 SAMN38038913-rid20011613.guided.36, whole genome shotgun sequence	7138..7953	Sulfamethoxazole	AY034138	tet(A)	99.92	1200/1200	ABOLLF010000033.1 Salmonella enterica strain PNUSAS396509 SAMN38038913-rid20011613.denovo.37, whole genome shotgun sequence	6838..8037	Doxycycline, Tetracycline	AJ517790	tet(A)	99.92	1200/1200	ABOLLF010000050.1 Salmonella enterica strain PNUSAS396509 SAMN38038913-rid20011613.guided.36, whole genome shotgun sequence	1..1200	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																						enterobacteriales	IncFIB(S)	100	643 / 643	ABOLLF010000019.1 Salmonella enterica strain PNUSAS396509 SAMN38038913-rid20011613.denovo.19, whole genome shotgun sequence	44666..45308	enterobacteriales	IncFII(S)	100	262 / 262	ABOLLF010000019.1 Salmonella enterica strain PNUSAS396509 SAMN38038913-rid20011613.denovo.19, whole genome shotgun sequence	60372..60633		enterobacteriales	IncQ1	100	796 / 796	ABOLLF010000033.1 Salmonella enterica strain PNUSAS396509 SAMN38038913-rid20011613.denovo.37, whole genome shotgun sequence	2239..3034		enterobacteriales	IncQ1	100	796 / 796	ABOLLF010000050.1 Salmonella enterica strain PNUSAS396509 SAMN38038913-rid20011613.guided.36, whole genome shotgun sequence	5004..5799																																		avrA	ABOLLF010000002.1	209052..209921	99.885	870	0						
GCA_033149275.1_PDT001962338.1_genomic.fna	Salmonella_enterica	0.5217	263.566 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLLI010000001.1 Salmonella enterica strain PNUSAS396550 SAMN38038929-rid20017523.denovo.01, whole genome shotgun sequence	626775..627212	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOLLI010000041.1 Salmonella enterica strain PNUSAS396550 SAMN38038929-rid20017523.guided.14, whole genome shotgun sequence	42438..42875	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLLI010000002.1	181433..182302	99.655	870	0						
GCA_033149295.1_PDT001962337.1_genomic.fna	Salmonella_enterica	0.5221	758.748 KB	3	aroC_5,dnaN_21,hemD_18,hisD_9,purE_6,sucA_12,thrA_17	50	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(Yp)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_21	hemD	100	100	hemD_18	hisD	100	100	hisD_9	purE	100	100	purE_6	sucA	100	100	sucA_12	thrA	100	100	thrA_17	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOLLG010000001.1 Salmonella enterica strain PNUSAS396529 SAMN38038922-rid20013263.denovo.01, whole genome shotgun sequence	482087..482524	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.32	438/438	ABOLLG010000022.1 Salmonella enterica strain PNUSAS396529 SAMN38038922-rid20013263.guided.17, whole genome shotgun sequence	614..1051	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOLLG010000023.1 Salmonella enterica strain PNUSAS396529 SAMN38038922-rid20013263.guided.18, whole genome shotgun sequence	614..1051	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																							enterobacteriales	IncFII(Yp)	91.96	224 / 230	ABOLLG010000012.1 Salmonella enterica strain PNUSAS396529 SAMN38038922-rid20013263.denovo.12, whole genome shotgun sequence	30694..30914																																																						avrA	ABOLLG010000004.1	553694..554563	99.655	870	0						
GCA_033149335.1_PDT001962335.1_genomic.fna	Salmonella_enterica	0.5217	277.605 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOLLJ010000003.1 Salmonella enterica strain PNUSAS396504 SAMN38038907-rid20013253.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOLLJ010000040.1 Salmonella enterica strain PNUSAS396504 SAMN38038907-rid20013253.guided.23, whole genome shotgun sequence	21039..21476	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOLLJ010000021.1 Salmonella enterica strain PNUSAS396504 SAMN38038907-rid20013253.denovo.21, whole genome shotgun sequence	44772..45414	enterobacteriales	IncFII(S)	100	262 / 262	ABOLLJ010000021.1 Salmonella enterica strain PNUSAS396504 SAMN38038907-rid20013253.denovo.21, whole genome shotgun sequence	29426..29687																																																avrA	ABOLLJ010000001.1	446742..447610	100	869	0						
GCA_033149355.1_PDT001962334.1_genomic.fna	Salmonella_enterica	0.5214	412.938 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	3	ColpVC,IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLLK010000001.1 Salmonella enterica strain PNUSAS396505 SAMN38038906-rid20013243.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLLK010000030.1 Salmonella enterica strain PNUSAS396505 SAMN38038906-rid20013243.guided.23, whole genome shotgun sequence	6127..6564	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	ColpVC	96.86	191 / 193	ABOLLK010000025.1 Salmonella enterica strain PNUSAS396505 SAMN38038906-rid20013243.denovo.28, whole genome shotgun sequence	1524..1714	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLLK010000021.1 Salmonella enterica strain PNUSAS396505 SAMN38038906-rid20013243.denovo.21, whole genome shotgun sequence	6834..7476		enterobacteriales	IncFII(S)	100	262 / 262	ABOLLK010000018.1 Salmonella enterica strain PNUSAS396505 SAMN38038906-rid20013243.denovo.18, whole genome shotgun sequence	5032..5293																																									avrA	ABOLLK010000002.1	553636..554505	99.54	870	0						
GCA_033149395.1_PDT001962332.1_genomic.fna	Salmonella_enterica	0.5215	336.866 KB	4	aroC_15,dnaN_70,hemD_93,hisD_78,purE_113,sucA_6,thrA_68	413	7:z10:e,n,z15	3	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(3)-VIa,aadA1,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha),IncI1-I(Alpha)	aroC	100	100	aroC_15	dnaN	100	100	dnaN_70	hemD	100	100	hemD_93	hisD	100	100	hisD_78	purE	100	100	purE_113	sucA	100	100	sucA_6	thrA	100	100	thrA_68	7	z10	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Mbandaka		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLLM010000001.1 Salmonella enterica strain PNUSAS396503 SAMN38038905-rid20015003.denovo.01, whole genome shotgun sequence	772111..772548	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOLLM010000014.1 Salmonella enterica strain PNUSAS396503 SAMN38038905-rid20015003.denovo.14, whole genome shotgun sequence	72429..73331	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	99.87	792/792	ABOLLM010000014.1 Salmonella enterica strain PNUSAS396503 SAMN38038905-rid20015003.denovo.14, whole genome shotgun sequence	71474..72265	Spectinomycin, Streptomycin	JQ414041	aac(3)-VIa	100	903/903	ABOLLM010000035.1 Salmonella enterica strain PNUSAS396503 SAMN38038905-rid20015003.guided.20, whole genome shotgun sequence	1122..2024	Gentamicin, Gentamicin, Sisomicin, Netilmicin, Tobramycin	NC_009838	aadA1	99.87	792/792	ABOLLM010000035.1 Salmonella enterica strain PNUSAS396503 SAMN38038905-rid20015003.guided.20, whole genome shotgun sequence	167..958	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	98.63	438/438	ABOLLM010000037.1 Salmonella enterica strain PNUSAS396503 SAMN38038905-rid20015003.guided.23, whole genome shotgun sequence	8847..9284	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																														parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOLLM010000014.1 Salmonella enterica strain PNUSAS396503 SAMN38038905-rid20015003.denovo.14, whole genome shotgun sequence	79854..79995	enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOLLM010000035.1 Salmonella enterica strain PNUSAS396503 SAMN38038905-rid20015003.guided.20, whole genome shotgun sequence	8547..8688																																																avrA	ABOLLM010000003.1	153272..154141	99.195	870	0						
GCA_033149415.1_PDT001962333.1_genomic.fna	Salmonella_enterica	0.521	490.178 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLLL010000001.1 Salmonella enterica strain PNUSAS396510 SAMN38038911-rid20016223.denovo.01, whole genome shotgun sequence	161913..162350	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLLL010000027.1 Salmonella enterica strain PNUSAS396510 SAMN38038911-rid20016223.guided.19, whole genome shotgun sequence	5135..5572	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLLL010000014.1 Salmonella enterica strain PNUSAS396510 SAMN38038911-rid20016223.denovo.14, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOLLL010000017.1 Salmonella enterica strain PNUSAS396510 SAMN38038911-rid20016223.denovo.20, whole genome shotgun sequence	3418..3679																																																avrA	ABOLLL010000002.1	585348..586217	99.54	870	0						
GCA_033149435.1_PDT001962331.1_genomic.fna	Salmonella_enterica	0.5215	489.886 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLLN010000001.1 Salmonella enterica strain PNUSAS396534 SAMN38038920-rid20018543.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLLN010000025.1 Salmonella enterica strain PNUSAS396534 SAMN38038920-rid20018543.guided.19, whole genome shotgun sequence	363..800	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLLN010000012.1 Salmonella enterica strain PNUSAS396534 SAMN38038920-rid20018543.denovo.12, whole genome shotgun sequence	40540..41182	enterobacteriales	IncFII(S)	100	262 / 262	ABOLLN010000015.1 Salmonella enterica strain PNUSAS396534 SAMN38038920-rid20018543.denovo.16, whole genome shotgun sequence	3365..3626																																																avrA	ABOLLN010000002.1	553499..554368	99.54	870	0						
GCA_033149455.1_PDT001962330.1_genomic.fna	Salmonella_enterica	0.5215	383.54 KB	4	aroC_2,dnaN_7,hemD_9,hisD_9,purE_5,sucA_9,thrA_12	15	4:r:1,2	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_7	hemD	100	100	hemD_9	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_12	4	r	1,2	Salmonella enterica subspecies enterica (subspecies I)	Heidelberg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.26	438/438	ABOLLO010000001.1 Salmonella enterica strain PNUSAS396506 SAMN38038908-rid20014993.denovo.01, whole genome shotgun sequence	382942..383379	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.26	438/438	ABOLLO010000033.1 Salmonella enterica strain PNUSAS396506 SAMN38038908-rid20014993.guided.29, whole genome shotgun sequence	333..770	Amikacin, Tobramycin	NC_003197	fosA7	100	423/423	ABOLLO010000005.1 Salmonella enterica strain PNUSAS396506 SAMN38038908-rid20014993.denovo.05, whole genome shotgun sequence	38349..38771	Fosfomycin	LAPJ01000014	fosA7	100	423/423	ABOLLO010000030.1 Salmonella enterica strain PNUSAS396506 SAMN38038908-rid20014993.guided.22, whole genome shotgun sequence	8621..9043	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLLO010000002.1	564256..565125	99.54	870	0						
GCA_033149475.1_PDT001962326.1_genomic.fna	Salmonella_enterica	0.5218	687.827 KB	3	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLLS010000001.1 Salmonella enterica strain PNUSAS396525 SAMN38037966-rid20019583.denovo.01, whole genome shotgun sequence	643260..643697	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLLS010000026.1 Salmonella enterica strain PNUSAS396525 SAMN38037966-rid20019583.guided.16, whole genome shotgun sequence	2406..2843	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033149495.1_PDT001962327.1_genomic.fna	Salmonella_enterica	0.5222	367.995 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLLR010000001.1 Salmonella enterica strain PNUSAS396551 SAMN38037969-rid20013233.denovo.01, whole genome shotgun sequence	626776..627213	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOLLR010000036.1 Salmonella enterica strain PNUSAS396551 SAMN38037969-rid20013233.guided.19, whole genome shotgun sequence	40104..40541	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLLR010000002.1	181432..182301	99.655	870	0						
GCA_033149515.1_PDT001962325.1_genomic.fna	Salmonella_enterica	0.5212	749.871 KB	3	aroC_13,dnaN_12,hemD_17,hisD_520,purE_13,sucA_16,thrA_4	1674	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_520	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOLLT010000001.1 Salmonella enterica strain PNUSAS396539 SAMN38037978-rid20013223.denovo.01, whole genome shotgun sequence	422662..423099	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOLLT010000019.1 Salmonella enterica strain PNUSAS396539 SAMN38037978-rid20013223.guided.10, whole genome shotgun sequence	41309..41746	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLLT010000003.1	544786..545654	99.425	870	0						
GCA_033149535.1_PDT001962324.1_genomic.fna	Salmonella_enterica	0.5195	300.818 KB	6	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOLLU010000003.1 Salmonella enterica strain PNUSAS396544 SAMN38037964-rid20013213.denovo.03, whole genome shotgun sequence	343534..343971	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOLLU010000056.1 Salmonella enterica strain PNUSAS396544 SAMN38037964-rid20013213.guided.13, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLLU010000002.1	497918..498786	99.425	870	0						
GCA_033149555.1_PDT001962323.1_genomic.fna	Salmonella_enterica	0.5207	478.474 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLLV010000001.1 Salmonella enterica strain PNUSAS396553 SAMN38037975-rid20016213.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLLV010000022.1 Salmonella enterica strain PNUSAS396553 SAMN38037975-rid20016213.guided.15, whole genome shotgun sequence	8037..8474	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLLV010000011.1 Salmonella enterica strain PNUSAS396553 SAMN38037975-rid20016213.denovo.11, whole genome shotgun sequence	40526..41168	enterobacteriales	IncFII(S)	100	262 / 262	ABOLLV010000016.1 Salmonella enterica strain PNUSAS396553 SAMN38037975-rid20016213.denovo.19, whole genome shotgun sequence	3388..3649		enterobacteriales	IncX1	98.93	374 / 374	ABOLLV010000012.1 Salmonella enterica strain PNUSAS396553 SAMN38037975-rid20016213.denovo.12, whole genome shotgun sequence	32011..32384																																									avrA	ABOLLV010000002.1	553690..554559	99.54	870	0						
GCA_033149575.1_PDT001962322.1_genomic.fna	Salmonella_enterica	0.5214	392.302 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLLW010000001.1 Salmonella enterica strain PNUSAS396537 SAMN38037972-rid20014983.denovo.01, whole genome shotgun sequence	170669..171106	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLLW010000028.1 Salmonella enterica strain PNUSAS396537 SAMN38037972-rid20014983.guided.15, whole genome shotgun sequence	16442..16879	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLLW010000002.1	465067..465936	99.31	870	0						
GCA_033149585.1_PDT001962321.1_genomic.fna	Salmonella_enterica	0.5204	473.171 KB	5	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOLLY010000002.1 Salmonella enterica strain PNUSAS396535 SAMN38037970-rid20018533.denovo.02, whole genome shotgun sequence	609554..609991	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOLLY010000050.1 Salmonella enterica strain PNUSAS396535 SAMN38037970-rid20018533.guided.14, whole genome shotgun sequence	19150..19587	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLLY010000001.1	659166..660036	99.656	871	0						
GCA_033149615.1_PDT001962319.1_genomic.fna	Salmonella_enterica	0.5197	402.8 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLLZ010000008.1 Salmonella enterica strain PNUSAS396542 SAMN38037976-rid20011593.denovo.08, whole genome shotgun sequence	83321..83758	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLLZ010000048.1 Salmonella enterica strain PNUSAS396542 SAMN38037976-rid20011593.guided.14, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033149635.1_PDT001962320.1_genomic.fna	Salmonella_enterica	0.5209	406.326 KB	4	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLLX010000001.1 Salmonella enterica strain PNUSAS396545 SAMN38037974-rid20014973.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLLX010000031.1 Salmonella enterica strain PNUSAS396545 SAMN38037974-rid20014973.guided.13, whole genome shotgun sequence	44291..44728	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLLX010000014.1 Salmonella enterica strain PNUSAS396545 SAMN38037974-rid20014973.denovo.16, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOLLX010000014.1 Salmonella enterica strain PNUSAS396545 SAMN38037974-rid20014973.denovo.16, whole genome shotgun sequence	4416..4677																																																avrA	ABOLLX010000002.1	174828..175697	99.54	870	0						
GCA_033149655.1_PDT001962317.1_genomic.fna	Salmonella_enterica	0.5211	386.179 KB	4	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	4	aac(6')-Iaa,aac(3)-VIa,aadA1,aac(3)-VIa,aadA1,aac(6')-Iaa,tet(A),tet(A)	1	parC_p.T57S	4	Col(pHAD28),Col440I,IncI1-I(Alpha),p0111	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLMB010000001.1 Salmonella enterica strain PNUSAS396548 SAMN38037967-rid20014963.denovo.01, whole genome shotgun sequence	790287..790724	Amikacin, Tobramycin	NC_003197	aac(3)-VIa	100	903/903	ABOLMB010000011.1 Salmonella enterica strain PNUSAS396548 SAMN38037967-rid20014963.denovo.11, whole genome shotgun sequence	82041..82943	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABOLMB010000011.1 Salmonella enterica strain PNUSAS396548 SAMN38037967-rid20014963.denovo.11, whole genome shotgun sequence	81086..81877	Spectinomycin, Streptomycin	JQ414041	aac(3)-VIa	100	903/903	ABOLMB010000037.1 Salmonella enterica strain PNUSAS396548 SAMN38037967-rid20014963.guided.21, whole genome shotgun sequence	3982..4884	Gentamicin, Sisomicin, Netilmicin, Tobramycin, Gentamicin	NC_009838	aadA1	100	792/792	ABOLMB010000037.1 Salmonella enterica strain PNUSAS396548 SAMN38037967-rid20014963.guided.21, whole genome shotgun sequence	3027..3818	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	100	438/438	ABOLMB010000039.1 Salmonella enterica strain PNUSAS396548 SAMN38037967-rid20014963.guided.24, whole genome shotgun sequence	2897..3334	Amikacin, Tobramycin	NC_003197	tet(A)	100	1200/1200	ABOLMB010000011.1 Salmonella enterica strain PNUSAS396548 SAMN38037967-rid20014963.denovo.11, whole genome shotgun sequence	89426..90625	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOLMB010000038.1 Salmonella enterica strain PNUSAS396548 SAMN38037967-rid20014963.guided.22, whole genome shotgun sequence	2040..3239	Doxycycline, Tetracycline	AJ517790																																																																																																																																																																																																																																																																																																																																																																																																																parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col(pHAD28)	96.12	129 / 131	ABOLMB010000024.1 Salmonella enterica strain PNUSAS396548 SAMN38037967-rid20014963.denovo.29, whole genome shotgun sequence	547..675	enterobacteriales	Col440I	93.64	110 / 114	ABOLMB010000023.1 Salmonella enterica strain PNUSAS396548 SAMN38037967-rid20014963.denovo.28, whole genome shotgun sequence	1566..1675		enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOLMB010000011.1 Salmonella enterica strain PNUSAS396548 SAMN38037967-rid20014963.denovo.11, whole genome shotgun sequence	95988..96129		enterobacteriales	p0111	99.44	885 / 885	ABOLMB010000012.1 Salmonella enterica strain PNUSAS396548 SAMN38037967-rid20014963.denovo.12, whole genome shotgun sequence	68640..69524																																		avrA	ABOLMB010000007.1	93999..94868	98.966	870	0						
GCA_033149675.1_PDT001962318.1_genomic.fna	Salmonella_enterica	0.522	341.379 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5!,purE_5!,sucA_9,thrA_2	Unknown	4:i:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5!	purE	100	100	purE_5!	sucA	100	100	sucA_9	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOLMA010000004.1 Salmonella enterica strain PNUSAS396546 SAMN38037977-rid20017503.denovo.04, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOLMA010000041.1 Salmonella enterica strain PNUSAS396546 SAMN38037977-rid20017503.guided.18, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOLMA010000015.1 Salmonella enterica strain PNUSAS396546 SAMN38037977-rid20017503.denovo.16, whole genome shotgun sequence	14680..15322	enterobacteriales	IncFII(S)	100	262 / 262	ABOLMA010000015.1 Salmonella enterica strain PNUSAS396546 SAMN38037977-rid20017503.denovo.16, whole genome shotgun sequence	30407..30668																																																avrA	ABOLMA010000001.1	446666..447534	100	869	0						
GCA_033149695.1_PDT001962315.1_genomic.fna	Salmonella_enterica	0.5228	496.515 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLMD010000001.1 Salmonella enterica strain PNUSAS396530 SAMN38037971-rid20014953.denovo.01, whole genome shotgun sequence	833828..834265	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOLMD010000024.1 Salmonella enterica strain PNUSAS396530 SAMN38037971-rid20014953.guided.17, whole genome shotgun sequence	2875..3312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLMD010000025.1 Salmonella enterica strain PNUSAS396530 SAMN38037971-rid20014953.guided.18, whole genome shotgun sequence	2875..3312	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																			parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLMD010000002.1	605214..606083	98.966	870	0						
GCA_033149715.1_PDT001962316.1_genomic.fna	Salmonella_enterica	0.5217	391.762 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLMC010000001.1 Salmonella enterica strain PNUSAS396556 SAMN38037968-rid20019573.denovo.01, whole genome shotgun sequence	170684..171121	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLMC010000034.1 Salmonella enterica strain PNUSAS396556 SAMN38037968-rid20019573.guided.22, whole genome shotgun sequence	2689..3126	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLMC010000002.1	453006..453875	99.31	870	0						
GCA_033149735.1_PDT001962314.1_genomic.fna	Salmonella_enterica	0.5224	391.747 KB	5	aroC_42,dnaN_46,hemD_48,hisD_48,purE_40,sucA_35,thrA_4	94	11:r:e,n,x	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_42	dnaN	100	100	dnaN_46	hemD	100	100	hemD_48	hisD	100	100	hisD_48	purE	100	100	purE_40	sucA	100	100	sucA_35	thrA	100	100	thrA_4	11	r	e,n,x	Salmonella enterica subspecies enterica (subspecies I)	Rubislaw		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLME010000001.1 Salmonella enterica strain PNUSAS396552 SAMN38037960-rid20013203.denovo.01, whole genome shotgun sequence	170668..171105	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLME010000029.1 Salmonella enterica strain PNUSAS396552 SAMN38037960-rid20013203.guided.23, whole genome shotgun sequence	1466..1903	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLME010000003.1	361267..362136	99.31	870	0						
GCA_033149755.1_PDT001962313.1_genomic.fna	Salmonella_enterica	0.5215	496.516 KB	3	aroC_12,dnaN_2,hemD_15,hisD_14,purE_11,sucA_14,thrA_16	22	7:e,h:e,n,z15	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pHCM2)	aroC	100	100	aroC_12	dnaN	100	100	dnaN_2	hemD	100	100	hemD_15	hisD	100	100	hisD_14	purE	100	100	purE_11	sucA	100	100	sucA_14	thrA	100	100	thrA_16	7	e,h	e,n,z15	Salmonella enterica subspecies enterica (subspecies I)	Braenderup		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLMF010000001.1 Salmonella enterica strain PNUSAS396531 SAMN38037965-rid20016203.denovo.01, whole genome shotgun sequence	790285..790722	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLMF010000025.1 Salmonella enterica strain PNUSAS396531 SAMN38037965-rid20016203.guided.15, whole genome shotgun sequence	44324..44761	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pHCM2)	97.17	884 / 875	ABOLMF010000011.1 Salmonella enterica strain PNUSAS396531 SAMN38037965-rid20016203.denovo.11, whole genome shotgun sequence	27991..28874																																																						avrA	ABOLMF010000002.1	147026..147895	98.966	870	0						
GCA_033149775.1_PDT001962311.1_genomic.fna	Salmonella_enterica	0.523	627.259 KB	4	aroC_43,dnaN_41,hemD_16,hisD_13,purE_34,sucA_13,thrA_4	4	7:g,m,s:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_13	purE	100	100	purE_34	sucA	100	100	sucA_13	thrA	100	100	thrA_4	7	g,m,s	-	Salmonella enterica subspecies enterica (subspecies I)	Montevideo		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLMH010000002.1 Salmonella enterica strain PNUSAS396547 SAMN38037962-rid20018523.denovo.02, whole genome shotgun sequence	153902..154339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLMH010000028.1 Salmonella enterica strain PNUSAS396547 SAMN38037962-rid20018523.guided.24, whole genome shotgun sequence	2592..3029	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033149795.1_PDT001962312.1_genomic.fna	Salmonella_enterica	0.5225	226.08 KB	5	aroC_17,dnaN_2,hemD_10,hisD_166,purE_147,sucA_21,thrA_119	493	7:r:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFII(Yp)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_2	hemD	100	100	hemD_10	hisD	100	100	hisD_166	purE	100	100	purE_147	sucA	100	100	sucA_21	thrA	100	100	thrA_119	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLMG010000001.1 Salmonella enterica strain PNUSAS396543 SAMN38037961-rid20014943.denovo.01, whole genome shotgun sequence	365943..366380	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOLMG010000039.1 Salmonella enterica strain PNUSAS396543 SAMN38037961-rid20014943.guided.19, whole genome shotgun sequence	10124..10561	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFII(Yp)	91.96	224 / 230	ABOLMG010000019.1 Salmonella enterica strain PNUSAS396543 SAMN38037961-rid20014943.denovo.20, whole genome shotgun sequence	32506..32726																																																						avrA	ABOLMG010000002.1	149690..150559	99.655	870	0						
GCA_033149815.1_PDT001962310.1_genomic.fna	Salmonella_enterica	0.5208	489.739 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLMI010000001.1 Salmonella enterica strain PNUSAS396533 SAMN38037959-rid20014933.denovo.01, whole genome shotgun sequence	646640..647077	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLMI010000027.1 Salmonella enterica strain PNUSAS396533 SAMN38037959-rid20014933.guided.14, whole genome shotgun sequence	34467..34904	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLMI010000013.1 Salmonella enterica strain PNUSAS396533 SAMN38037959-rid20014933.denovo.15, whole genome shotgun sequence	49121..49763	enterobacteriales	IncFII(S)	100	262 / 262	ABOLMI010000013.1 Salmonella enterica strain PNUSAS396533 SAMN38037959-rid20014933.denovo.15, whole genome shotgun sequence	4868..5129																																																avrA	ABOLMI010000002.1	553187..554056	99.54	870	0						
GCA_033149835.1_PDT001962309.1_genomic.fna	Salmonella_enterica	0.5206	489.865 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		3	IncFIB(S),IncFII(S),IncX1	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLMJ010000001.1 Salmonella enterica strain PNUSAS396532 SAMN38037958-rid20011583.denovo.01, whole genome shotgun sequence	774422..774859	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLMJ010000025.1 Salmonella enterica strain PNUSAS396532 SAMN38037958-rid20011583.guided.17, whole genome shotgun sequence	9736..10173	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLMJ010000012.1 Salmonella enterica strain PNUSAS396532 SAMN38037958-rid20011583.denovo.12, whole genome shotgun sequence	48669..49311	enterobacteriales	IncFII(S)	100	262 / 262	ABOLMJ010000012.1 Salmonella enterica strain PNUSAS396532 SAMN38037958-rid20011583.denovo.12, whole genome shotgun sequence	4416..4677		enterobacteriales	IncX1	98.93	374 / 374	ABOLMJ010000013.1 Salmonella enterica strain PNUSAS396532 SAMN38037958-rid20011583.denovo.14, whole genome shotgun sequence	32011..32384																																									avrA	ABOLMJ010000002.1	553697..554566	99.54	870	0						
GCA_033149855.1_PDT001962308.1_genomic.fna	Salmonella_enterica	0.5212	489.877 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLMK010000001.1 Salmonella enterica strain PNUSAS396526 SAMN38037963-rid20017493.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLMK010000024.1 Salmonella enterica strain PNUSAS396526 SAMN38037963-rid20017493.guided.14, whole genome shotgun sequence	34039..34476	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLMK010000012.1 Salmonella enterica strain PNUSAS396526 SAMN38037963-rid20017493.denovo.13, whole genome shotgun sequence	40578..41220	enterobacteriales	IncFII(S)	100	262 / 262	ABOLMK010000015.1 Salmonella enterica strain PNUSAS396526 SAMN38037963-rid20017493.denovo.18, whole genome shotgun sequence	3403..3664																																																avrA	ABOLMK010000002.1	553636..554505	99.54	870	0						
GCA_033149875.1_PDT001962307.1_genomic.fna	Salmonella_enterica	0.5169	353.549 KB	5	aroC_483,dnaN_28,hemD_355,hisD_454,purE_493,sucA_29,thrA_30	2053	50:z4,z23:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFIB(pB171)	aroC	100	100	aroC_483	dnaN	100	100	dnaN_28	hemD	100	100	hemD_355	hisD	100	100	hisD_454	purE	100	100	purE_493	sucA	100	100	sucA_29	thrA	100	100	thrA_30	50	z4,z23	-	Salmonella enterica subspecies houtenae (subspecies IV)	IV 50:z4,z23:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	94.75	438/438	ABOLML010000002.1 Salmonella enterica strain PNUSAS396528 SAMN38037957-rid20014923.denovo.02, whole genome shotgun sequence	197675..198112	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	94.75	438/438	ABOLML010000062.1 Salmonella enterica strain PNUSAS396528 SAMN38037957-rid20014923.guided.51, whole genome shotgun sequence	197..634	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	92.69	643 / 643	ABOLML010000017.1 Salmonella enterica strain PNUSAS396528 SAMN38037957-rid20014923.denovo.17, whole genome shotgun sequence	67973..68615																																																																	
GCA_033149895.1_PDT001962306.1_genomic.fna	Salmonella_enterica	0.5212	153.354 KB	11	aroC_48,dnaN_128,hemD_96,hisD_119,purE_116,sucA_119,thrA_118	448	13:b:1,5	1	aac(6')-Iaa,aac(6')-Iaa	0		1	IncFIB(pB171)	aroC	100	100	aroC_48	dnaN	100	100	dnaN_128	hemD	100	100	hemD_96	hisD	100	100	hisD_119	purE	100	100	purE_116	sucA	100	100	sucA_119	thrA	100	100	thrA_118	13	b	1,5	Salmonella enterica subspecies enterica (subspecies I)	Mississippi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLMM010000001.1 Salmonella enterica strain PNUSAS396536 SAMN38037956-rid20019563.denovo.01, whole genome shotgun sequence	63806..64243	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.49	438/438	ABOLMM010000078.1 Salmonella enterica strain PNUSAS396536 SAMN38037956-rid20019563.guided.18, whole genome shotgun sequence	16440..16877	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(pB171)	92.22	643 / 643	ABOLMM010000012.1 Salmonella enterica strain PNUSAS396536 SAMN38037956-rid20019563.denovo.12, whole genome shotgun sequence	134211..134853																																																																	
GCA_033149915.1_PDT001962305.1_genomic.fna	Salmonella_enterica	0.5209	430.003 KB	5	aroC_533,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	2362	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_533	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLMO010000001.1 Salmonella enterica strain PNUSAS396540 SAMN38037955-rid20014913.denovo.01, whole genome shotgun sequence	561490..561927	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLMO010000030.1 Salmonella enterica strain PNUSAS396540 SAMN38037955-rid20014913.guided.13, whole genome shotgun sequence	42429..42866	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLMO010000011.1	140203..141071	99.195	870	0						
GCA_033149935.1_PDT001962328.1_genomic.fna	Salmonella_enterica	0.5213	341.898 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOLLQ010000003.1 Salmonella enterica strain PNUSAS396555 SAMN38037979-rid20017513.denovo.03, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOLLQ010000040.1 Salmonella enterica strain PNUSAS396555 SAMN38037979-rid20017513.guided.15, whole genome shotgun sequence	42424..42861	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOLLQ010000016.1 Salmonella enterica strain PNUSAS396555 SAMN38037979-rid20017513.denovo.17, whole genome shotgun sequence	44751..45393	enterobacteriales	IncFII(S)	100	262 / 262	ABOLLQ010000016.1 Salmonella enterica strain PNUSAS396555 SAMN38037979-rid20017513.denovo.17, whole genome shotgun sequence	29405..29666																																																avrA	ABOLLQ010000005.1	174651..175519	100	869	0						
GCA_033150055.1_PDT001962290.1_genomic.fna	Salmonella_enterica	0.5213	215.94 KB	5	aroC_17,dnaN_18,hemD_22,hisD_17,purE_5,sucA_21,thrA_19	32	7:r:1,5	7	aac(6')-Iaa,aph(4)-Ia,aac(3)-IV,aadA1,aadA1,aac(6')-Iaa,aadA1,aadA1,aph(4)-Ia,aac(3)-IV,sul1,sul1,tet(A),tet(A),dfrA14,dfrA14	2	gyrA_p.D87Y,parC_p.T57S	1	IncFIB(pN55391)	aroC	100	100	aroC_17	dnaN	100	100	dnaN_18	hemD	100	100	hemD_22	hisD	100	100	hisD_17	purE	100	100	purE_5	sucA	100	100	sucA_21	thrA	100	100	thrA_19	7	r	1,5	Salmonella enterica subspecies enterica (subspecies I)	Infantis		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.49	438/438	ABOLMS010000001.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.denovo.01, whole genome shotgun sequence	460176..460613	Amikacin, Tobramycin	NC_003197	aph(4)-Ia	100	1026/1026	ABOLMS010000017.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.denovo.17, whole genome shotgun sequence	82806..83831	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOLMS010000017.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.denovo.17, whole genome shotgun sequence	84060..84836	Gentamicin, Tobramycin	DQ241380	aadA1	99.75	792/792	ABOLMS010000025.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.denovo.26, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLMS010000025.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.denovo.26, whole genome shotgun sequence	1218..2009	Spectinomycin, Streptomycin	JQ414041	aac(6')-Iaa	97.49	438/438	ABOLMS010000046.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.guided.33, whole genome shotgun sequence	8823..9260	Amikacin, Tobramycin	NC_003197	aadA1	99.75	792/792	ABOLMS010000047.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.guided.35, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JX185132	aadA1	99.75	792/792	ABOLMS010000047.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.guided.35, whole genome shotgun sequence	1258..2049	Spectinomycin, Streptomycin	JQ414041	aph(4)-Ia	100	1026/1026	ABOLMS010000050.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.guided.47, whole genome shotgun sequence	1095..2120	Hygromycin	V01499	aac(3)-IV	100	777/777	ABOLMS010000050.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.guided.47, whole genome shotgun sequence	90..866	Gentamicin, Tobramycin	DQ241380	sul1	100	840/840	ABOLMS010000025.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.denovo.26, whole genome shotgun sequence	2514..3353	Sulfamethoxazole	U12338	sul1	100	840/840	ABOLMS010000047.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.guided.35, whole genome shotgun sequence	2554..3393	Sulfamethoxazole	U12338	tet(A)	100	1200/1200	ABOLMS010000025.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.denovo.26, whole genome shotgun sequence	15870..17069	Doxycycline, Tetracycline	AJ517790	tet(A)	100	1200/1200	ABOLMS010000045.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.guided.29, whole genome shotgun sequence	6504..7703	Doxycycline, Tetracycline	AJ517790	dfrA14	100	474/474	ABOLMS010000032.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.denovo.37, whole genome shotgun sequence	3732..4205	Trimethoprim	AF393510	dfrA14	100	474/474	ABOLMS010000049.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.guided.41, whole genome shotgun sequence	2284..2757	Trimethoprim	AF393510																																																																																																																																																																																																																																																																																																																																																								gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468											enterobacteriales	IncFIB(pN55391)	100	560 / 560	ABOLMS010000028.1 Salmonella enterica strain 23WA10CB02-S1 SAMN38037537-rid20014883.denovo.30, whole genome shotgun sequence	9109..9668																																																						avrA	ABOLMS010000002.1	150931..151800	99.655	870	0						
GCA_033150075.1_PDT001962288.1_genomic.fna	Salmonella_enterica	0.5172	128.811 KB	11	aroC_62,dnaN_53,hemD_54,hisD_60,purE_5,sucA_53,thrA_54	152	8:i:z6	3	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aac(6')-Iaa	1	parC_p.T57S	3	IncHI2,IncHI2A,IncX1	aroC	100	100	aroC_62	dnaN	100	100	dnaN_53	hemD	100	100	hemD_54	hisD	100	100	hisD_60	purE	100	100	purE_5	sucA	100	100	sucA_53	thrA	100	100	thrA_54	8	i	z6	Salmonella enterica subspecies enterica (subspecies I)	Kentucky		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLMU010000022.1 Salmonella enterica strain 23WA10CB03-S1 SAMN38037538-rid20017473.denovo.22, whole genome shotgun sequence	1025..1462	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLMU010000038.1 Salmonella enterica strain 23WA10CB03-S1 SAMN38037538-rid20017473.denovo.39, whole genome shotgun sequence	2315..3151	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOLMU010000038.1 Salmonella enterica strain 23WA10CB03-S1 SAMN38037538-rid20017473.denovo.39, whole genome shotgun sequence	1513..2315	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOLMU010000038.1 Salmonella enterica strain 23WA10CB03-S1 SAMN38037538-rid20017473.denovo.39, whole genome shotgun sequence	1512..2315	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOLMU010000038.1 Salmonella enterica strain 23WA10CB03-S1 SAMN38037538-rid20017473.denovo.39, whole genome shotgun sequence	1512..2315	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOLMU010000038.1 Salmonella enterica strain 23WA10CB03-S1 SAMN38037538-rid20017473.denovo.39, whole genome shotgun sequence	1512..2315	Streptomycin	AF321550	aph(6)-Id	100	837/837	ABOLMU010000098.1 Salmonella enterica strain 23WA10CB03-S1 SAMN38037538-rid20017473.guided.44, whole genome shotgun sequence	2356..3192	Streptomycin	M28829	aph(3'')-Ib	100	803/804	ABOLMU010000098.1 Salmonella enterica strain 23WA10CB03-S1 SAMN38037538-rid20017473.guided.44, whole genome shotgun sequence	1554..2356	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	ABOLMU010000098.1 Salmonella enterica strain 23WA10CB03-S1 SAMN38037538-rid20017473.guided.44, whole genome shotgun sequence	1553..2356	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	ABOLMU010000098.1 Salmonella enterica strain 23WA10CB03-S1 SAMN38037538-rid20017473.guided.44, whole genome shotgun sequence	1553..2356	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	ABOLMU010000098.1 Salmonella enterica strain 23WA10CB03-S1 SAMN38037538-rid20017473.guided.44, whole genome shotgun sequence	1553..2356	Streptomycin	AF321550	aac(6')-Iaa	97.95	438/438	ABOLMU010000100.1 Salmonella enterica strain 23WA10CB03-S1 SAMN38037538-rid20017473.guided.58, whole genome shotgun sequence	8076..8513	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																				parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncHI2	100	327 / 327	ABOLMU010000032.1 Salmonella enterica strain 23WA10CB03-S1 SAMN38037538-rid20017473.denovo.33, whole genome shotgun sequence	28959..29285	enterobacteriales	IncHI2A	99.52	630 / 630	ABOLMU010000032.1 Salmonella enterica strain 23WA10CB03-S1 SAMN38037538-rid20017473.denovo.33, whole genome shotgun sequence	47269..47898		enterobacteriales	IncX1	100	373 / 373	ABOLMU010000055.1 Salmonella enterica strain 23WA10CB03-S1 SAMN38037538-rid20017473.denovo.59, whole genome shotgun sequence	2218..2590																																									avrA	ABOLMU010000017.1	94214..95083	99.655	870	0						
GCA_033150115.1_PDT001962283.1_genomic.fna	Salmonella_enterica	0.5212	406.409 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.S83Y	3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.12	438/438	ABOLMY010000001.1 Salmonella enterica strain PNUSAS396569 SAMN38037529-rid20017463.denovo.01, whole genome shotgun sequence	815095..815532	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.12	438/438	ABOLMY010000028.1 Salmonella enterica strain PNUSAS396569 SAMN38037529-rid20017463.guided.22, whole genome shotgun sequence	8833..9270	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	Col(pHAD28)	90.84	131 / 131	ABOLMY010000022.1 Salmonella enterica strain PNUSAS396569 SAMN38037529-rid20017463.denovo.25, whole genome shotgun sequence	3852..3982	enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLMY010000019.1 Salmonella enterica strain PNUSAS396569 SAMN38037529-rid20017463.denovo.20, whole genome shotgun sequence	6820..7462		enterobacteriales	IncFII(S)	100	262 / 262	ABOLMY010000020.1 Salmonella enterica strain PNUSAS396569 SAMN38037529-rid20017463.denovo.23, whole genome shotgun sequence	3404..3665																																									avrA	ABOLMY010000002.1	552767..553636	99.54	870	0						
GCA_033150155.1_PDT001962281.1_genomic.fna	Salmonella_enterica	0.5211	272.925 KB	6	aroC_20,dnaN_4,hemD_23,hisD_14,purE_16,sucA_19,thrA_140	423	4:b:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncI1-I(Alpha)	aroC	100	100	aroC_20	dnaN	100	100	dnaN_4	hemD	100	100	hemD_23	hisD	100	100	hisD_14	purE	100	100	purE_16	sucA	100	100	sucA_19	thrA	100	100	thrA_140	4	b	-	Salmonella enterica subspecies enterica (subspecies I)	I 4:b:-	This predicted serotype is not in the Kauffman-White scheme. The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLNA010000009.1 Salmonella enterica strain PNUSAS396565 SAMN38037535-rid20019533.denovo.09, whole genome shotgun sequence	37880..38317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLNA010000044.1 Salmonella enterica strain PNUSAS396565 SAMN38037535-rid20019533.guided.26, whole genome shotgun sequence	40120..40557	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncI1-I(Alpha)	100	142 / 142	ABOLNA010000023.1 Salmonella enterica strain PNUSAS396565 SAMN38037535-rid20019533.denovo.23, whole genome shotgun sequence	36109..36250																																																																	
GCA_033150175.1_PDT001962280.1_genomic.fna	Salmonella_enterica	0.5219	396.728 KB	4	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOLNB010000001.1 Salmonella enterica strain PNUSAS396563 SAMN38037533-rid20013153.denovo.01, whole genome shotgun sequence	684352..684789	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOLNB010000025.1 Salmonella enterica strain PNUSAS396563 SAMN38037533-rid20013153.guided.19, whole genome shotgun sequence	20568..21005	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLNB010000003.1	128676..129545	99.77	870	0						
GCA_033150195.1_PDT001962284.1_genomic.fna	Salmonella_enterica	0.5214	375.669 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLMX010000001.1 Salmonella enterica strain PNUSAS396571 SAMN38037531-rid20011533.denovo.01, whole genome shotgun sequence	774366..774803	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLMX010000027.1 Salmonella enterica strain PNUSAS396571 SAMN38037531-rid20011533.guided.22, whole genome shotgun sequence	9924..10361	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLMX010000020.1 Salmonella enterica strain PNUSAS396571 SAMN38037531-rid20011533.denovo.20, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOLMX010000016.1 Salmonella enterica strain PNUSAS396571 SAMN38037531-rid20011533.denovo.16, whole genome shotgun sequence	5032..5293																																																avrA	ABOLMX010000002.1	553635..554504	99.54	870	0						
GCA_033150215.1_PDT001962282.1_genomic.fna	Salmonella_enterica	0.5214	322.099 KB	6	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLMZ010000001.1 Salmonella enterica strain PNUSAS396572 SAMN38037534-rid20011523.denovo.01, whole genome shotgun sequence	458966..459403	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLMZ010000043.1 Salmonella enterica strain PNUSAS396572 SAMN38037534-rid20011523.guided.23, whole genome shotgun sequence	36065..36502	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOLMZ010000027.1 Salmonella enterica strain PNUSAS396572 SAMN38037534-rid20011523.denovo.28, whole genome shotgun sequence	24671..25313	enterobacteriales	IncFII(S)	100	262 / 262	ABOLMZ010000027.1 Salmonella enterica strain PNUSAS396572 SAMN38037534-rid20011523.denovo.28, whole genome shotgun sequence	9325..9586																																																avrA	ABOLMZ010000002.1	209723..210592	99.885	870	0						
GCA_033150255.1_PDT001962279.1_genomic.fna	Salmonella_enterica	0.5203	373.044 KB	4	aroC_19,dnaN_20,hemD_3,hisD_20,purE_5,sucA_22,thrA_22	40	4:f,g:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	1	Col440I	aroC	100	100	aroC_19	dnaN	100	100	dnaN_20	hemD	100	100	hemD_3	hisD	100	100	hisD_20	purE	100	100	purE_5	sucA	100	100	sucA_22	thrA	100	100	thrA_22	4	f,g	-	Salmonella enterica subspecies enterica (subspecies I)	Derby		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.17	438/438	ABOLND010000001.1 Salmonella enterica strain PNUSAS396566 SAMN38037532-rid20013143.denovo.01, whole genome shotgun sequence	470342..470779	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.17	438/438	ABOLND010000037.1 Salmonella enterica strain PNUSAS396566 SAMN38037532-rid20013143.guided.28, whole genome shotgun sequence	12465..12902	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOLND010000002.1 Salmonella enterica strain PNUSAS396566 SAMN38037532-rid20013143.denovo.02, whole genome shotgun sequence	160606..161028	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOLND010000034.1 Salmonella enterica strain PNUSAS396566 SAMN38037532-rid20013143.guided.24, whole genome shotgun sequence	18575..18997	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	Col440I	95.61	114 / 114	ABOLND010000026.1 Salmonella enterica strain PNUSAS396566 SAMN38037532-rid20013143.denovo.30, whole genome shotgun sequence	787..900																																																						avrA	ABOLND010000003.1	184237..185106	99.655	870	0						
GCA_033150275.1_PDT001962278.1_genomic.fna	Salmonella_enterica	0.5214	201.852 KB	8	aroC_2,dnaN_14,hemD_24,hisD_14,purE_2,sucA_19,thrA_8	43	4:b:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_2	dnaN	100	100	dnaN_14	hemD	100	100	hemD_24	hisD	100	100	hisD_14	purE	100	100	purE_2	sucA	100	100	sucA_19	thrA	100	100	thrA_8	4	b	1,2	Salmonella enterica subspecies enterica (subspecies I)	Paratyphi B var. L(+) tartrate+	The SNP in gene STM3356 that is associated with the d-Tartrate nonfermenting phenotype characteristic of the typhoidal pathotype was not detected.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLNE010000002.1 Salmonella enterica strain PNUSAS396573 SAMN38037530-rid20016173.denovo.02, whole genome shotgun sequence	379860..380297	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLNE010000042.1 Salmonella enterica strain PNUSAS396573 SAMN38037530-rid20016173.guided.33, whole genome shotgun sequence	8812..9249	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033150435.1_PDT001962252.1_genomic.fna	Salmonella_enterica	0.5219	332.28 KB	5	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOLNN010000001.1 Salmonella enterica strain PNUSAS396466 SAMN38036895-rid20011473.denovo.01, whole genome shotgun sequence	348791..349228	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOLNN010000027.1 Salmonella enterica strain PNUSAS396466 SAMN38036895-rid20011473.guided.20, whole genome shotgun sequence	23143..23580	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLNN010000007.1	95036..95904	99.54	870	0						
GCA_033150495.1_PDT001962251.1_genomic.fna	Salmonella_enterica	0.5217	733.386 KB	2	aroC_10,dnaN_7,hemD_21,hisD_14,purE_15,sucA_12,thrA_12	45	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_21	hisD	100	100	hisD_14	purE	100	100	purE_15	sucA	100	100	sucA_12	thrA	100	100	thrA_12	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.54	438/438	ABOLNO010000001.1 Salmonella enterica strain PNUSAS396464 SAMN38036887-rid20019493.denovo.01, whole genome shotgun sequence	644918..645355	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.54	438/438	ABOLNO010000038.1 Salmonella enterica strain PNUSAS396464 SAMN38036887-rid20019493.guided.14, whole genome shotgun sequence	4028..4465	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(S)	95.79	261 / 262	ABOLNO010000016.1 Salmonella enterica strain PNUSAS396464 SAMN38036887-rid20019493.denovo.17, whole genome shotgun sequence	3792..4050																																																						avrA	ABOLNO010000002.1	592342..593212	99.656	871	0						
GCA_033150515.1_PDT001962250.1_genomic.fna	Salmonella_enterica	0.5215	249.723 KB	7	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLNP010000003.1 Salmonella enterica strain PNUSAS396478 SAMN38036901-rid20013093.denovo.03, whole genome shotgun sequence	136543..136980	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLNP010000044.1 Salmonella enterica strain PNUSAS396478 SAMN38036901-rid20013093.guided.27, whole genome shotgun sequence	32644..33081	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLNP010000001.1	39473..40339	99.08	870	0						
GCA_033150535.1_PDT001962249.1_genomic.fna	Salmonella_enterica	0.5189	181.222 KB	8	aroC_3,dnaN_3,hemD_7,hisD_4,purE_3,sucA_3,thrA_7	13	4:f,g,s:-	2	aac(6')-Iaa,aac(6')-Iaa,fosA7,fosA7	1	parC_p.T57S	0		aroC	100	100	aroC_3	dnaN	100	100	dnaN_3	hemD	100	100	hemD_7	hisD	100	100	hisD_4	purE	100	100	purE_3	sucA	100	100	sucA_3	thrA	100	100	thrA_7	4	f,g,s	-	Salmonella enterica subspecies enterica (subspecies I)	Agona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLNQ010000001.1 Salmonella enterica strain PNUSAS396476 SAMN38036900-rid20019483.denovo.01, whole genome shotgun sequence	486124..486561	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLNQ010000045.1 Salmonella enterica strain PNUSAS396476 SAMN38036900-rid20019483.guided.31, whole genome shotgun sequence	8248..8685	Amikacin, Tobramycin	NC_003197	fosA7	97.16	423/423	ABOLNQ010000006.1 Salmonella enterica strain PNUSAS396476 SAMN38036900-rid20019483.denovo.06, whole genome shotgun sequence	27816..28238	Fosfomycin	LAPJ01000014	fosA7	97.16	423/423	ABOLNQ010000047.1 Salmonella enterica strain PNUSAS396476 SAMN38036900-rid20019483.guided.41, whole genome shotgun sequence	548..970	Fosfomycin	LAPJ01000014																																																																																																																																																																																																																																																																																																																																																																																																																																												parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLNQ010000002.1	39347..40216	99.195	870	0						
GCA_033150555.1_PDT001962247.1_genomic.fna	Salmonella_enterica	0.5207	209.769 KB	9	aroC_43,dnaN_41,hemD_16,hisD_85,purE_40,sucA_58,thrA_3	1392	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(pCRY)	aroC	100	100	aroC_43	dnaN	100	100	dnaN_41	hemD	100	100	hemD_16	hisD	100	100	hisD_85	purE	100	100	purE_40	sucA	100	100	sucA_58	thrA	100	100	thrA_3	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLNS010000001.1 Salmonella enterica strain PNUSAS396474 SAMN38036896-rid20013083.denovo.001, whole genome shotgun sequence	620346..620783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLNS010000104.1 Salmonella enterica strain PNUSAS396474 SAMN38036896-rid20013083.guided.025, whole genome shotgun sequence	7771..8208	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(pCRY)	93.93	593 / 593	ABOLNS010000031.1 Salmonella enterica strain PNUSAS396474 SAMN38036896-rid20013083.denovo.033, whole genome shotgun sequence	2544..3136																																																						avrA	ABOLNS010000009.1	39348..40217	99.54	870	0						
GCA_033150575.1_PDT001962248.1_genomic.fna	Salmonella_enterica	0.52	167.062 KB	9	aroC_46,dnaN_71,hemD_365,hisD_130,purE_6,sucA_162,thrA_115	2118	4:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	2	IncFIB(pB171),IncI(Gamma)	aroC	100	100	aroC_46	dnaN	100	100	dnaN_71	hemD	100	100	hemD_365	hisD	100	100	hisD_130	purE	100	100	purE_6	sucA	100	100	sucA_162	thrA	100	100	thrA_115	4	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Saintpaul		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOLNR010000002.1 Salmonella enterica strain PNUSAS396470 SAMN38036897-rid20016143.denovo.02, whole genome shotgun sequence	246102..246539	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOLNR010000098.1 Salmonella enterica strain PNUSAS396470 SAMN38036897-rid20016143.guided.29, whole genome shotgun sequence	31771..32208	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFIB(pB171)	91.76	643 / 643	ABOLNR010000060.1 Salmonella enterica strain PNUSAS396470 SAMN38036897-rid20016143.denovo.63, whole genome shotgun sequence	1205..1847	enterobacteriales	IncI(Gamma)	97.81	137 / 141	ABOLNR010000046.1 Salmonella enterica strain PNUSAS396470 SAMN38036897-rid20016143.denovo.49, whole genome shotgun sequence	2776..2912																																																avrA	ABOLNR010000001.1	39349..40218	99.425	870	0						
GCA_033150595.1_PDT001962246.1_genomic.fna	Salmonella_enterica	0.5212	379.577 KB	5	aroC_14,dnaN_13,hemD_18,hisD_12,purE_14,sucA_18,thrA_1	26	7:k:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	1	IncFII(p96A)	aroC	100	100	aroC_14	dnaN	100	100	dnaN_13	hemD	100	100	hemD_18	hisD	100	100	hisD_12	purE	100	100	purE_14	sucA	100	100	sucA_18	thrA	100	100	thrA_1	7	k	1,5	Salmonella enterica subspecies enterica (subspecies I)	Thompson		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOLNU010000001.1 Salmonella enterica strain PNUSAS396469 SAMN38036890-rid20018463.denovo.01, whole genome shotgun sequence	177173..177610	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOLNU010000048.1 Salmonella enterica strain PNUSAS396469 SAMN38036890-rid20018463.guided.21, whole genome shotgun sequence	7486..7923	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																enterobacteriales	IncFII(p96A)	100	534 / 534	ABOLNU010000029.1 Salmonella enterica strain PNUSAS396469 SAMN38036890-rid20018463.denovo.32, whole genome shotgun sequence	891..1424																																																						avrA	ABOLNU010000014.1	39405..40274	99.77	870	0						
GCA_033150615.1_PDT001962245.1_genomic.fna	Salmonella_enterica	0.5214	283.168 KB	5	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLNT010000001.1 Salmonella enterica strain PNUSAS396473 SAMN38036899-rid20014833.denovo.01, whole genome shotgun sequence	293267..293704	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLNT010000045.1 Salmonella enterica strain PNUSAS396473 SAMN38036899-rid20014833.guided.27, whole genome shotgun sequence	748..1185	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLNT010000022.1 Salmonella enterica strain PNUSAS396473 SAMN38036899-rid20014833.denovo.24, whole genome shotgun sequence	4941..5583	enterobacteriales	IncFII(S)	100	262 / 262	ABOLNT010000024.1 Salmonella enterica strain PNUSAS396473 SAMN38036899-rid20014833.denovo.26, whole genome shotgun sequence	3297..3558																																																avrA	ABOLNT010000002.1	553113..553982	99.54	870	0						
GCA_033150625.1_PDT001962244.1_genomic.fna	Salmonella_enterica	0.521	222.352 KB	7	aroC_10,dnaN_457,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	2072	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_457	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLNV010000001.1 Salmonella enterica strain PNUSAS396477 SAMN38036898-rid20018453.denovo.01, whole genome shotgun sequence	145261..145698	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLNV010000094.1 Salmonella enterica strain PNUSAS396477 SAMN38036898-rid20018453.guided.18, whole genome shotgun sequence	33998..34435	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOLNV010000043.1 Salmonella enterica strain PNUSAS396477 SAMN38036898-rid20018453.denovo.46, whole genome shotgun sequence	1481..2123	enterobacteriales	IncFII(S)	100	262 / 262	ABOLNV010000085.1 Salmonella enterica strain PNUSAS396477 SAMN38036898-rid20018453.denovo.88, whole genome shotgun sequence	367..628																																																avrA	ABOLNV010000008.1	39625..40494	99.885	870	0						
GCA_033150655.1_PDT001962243.1_genomic.fna	Salmonella_enterica	0.5217	269.967 KB	5	aroC_16,dnaN_16,hemD_20,hisD_18,purE_8,sucA_12,thrA_18	29	4:d:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_16	hemD	100	100	hemD_20	hisD	100	100	hisD_18	purE	100	100	purE_8	sucA	100	100	sucA_12	thrA	100	100	thrA_18	4	d	1,2	Salmonella enterica subspecies enterica (subspecies I)	Stanley		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLNX010000001.1 Salmonella enterica strain PNUSAS396465 SAMN38036892-rid20017393.denovo.01, whole genome shotgun sequence	657515..657952	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLNX010000030.1 Salmonella enterica strain PNUSAS396465 SAMN38036892-rid20017393.guided.25, whole genome shotgun sequence	6013..6450	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLNX010000008.1	39349..40215	99.08	870	0						
GCA_033150675.1_PDT001962241.1_genomic.fna	Salmonella_enterica	0.5213	195.187 KB	10	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium	Detected a deletion in gene oafA that causes O5- variant of Typhimurium.	O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOLNY010000001.1 Salmonella enterica strain PNUSAS396471 SAMN38036891-rid20017383.denovo.01, whole genome shotgun sequence	68376..68813	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOLNY010000090.1 Salmonella enterica strain PNUSAS396471 SAMN38036891-rid20017383.guided.24, whole genome shotgun sequence	20997..21434	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOLNY010000008.1	39613..40481	100	869	0						
GCA_033150695.1_PDT001962242.1_genomic.fna	Salmonella_enterica	0.5215	213.923 KB	9	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	2	aac(6')-Iaa,aac(2')-IIa,aac(6')-Iaa,aac(2')-IIa	0		3	Col(pHAD28),IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOLOA010000001.1 Salmonella enterica strain PNUSAS396472 SAMN38036888-rid20011463.denovo.001, whole genome shotgun sequence	68381..68818	Amikacin, Tobramycin	NC_003197	aac(2')-IIa	98.72	783/783	ABOLOA010000024.1 Salmonella enterica strain PNUSAS396472 SAMN38036888-rid20011463.denovo.024, whole genome shotgun sequence	20968..21750	Kasugamycin	AB669090	aac(6')-Iaa	99.77	438/438	ABOLOA010000134.1 Salmonella enterica strain PNUSAS396472 SAMN38036888-rid20011463.guided.044, whole genome shotgun sequence	428..865	Amikacin, Tobramycin	NC_003197	aac(2')-IIa	98.72	783/783	ABOLOA010000135.1 Salmonella enterica strain PNUSAS396472 SAMN38036888-rid20011463.guided.049, whole genome shotgun sequence	4236..5018	Kasugamycin	AB669090																																																																																																																																																																																																																																																																																																																																																																																																																																																																enterobacteriales	Col(pHAD28)	91.6	131 / 131	ABOLOA010000050.1 Salmonella enterica strain PNUSAS396472 SAMN38036888-rid20011463.denovo.054, whole genome shotgun sequence	1251..1381	enterobacteriales	IncFIB(S)	100	643 / 643	ABOLOA010000058.1 Salmonella enterica strain PNUSAS396472 SAMN38036888-rid20011463.denovo.062, whole genome shotgun sequence	915..1557		enterobacteriales	IncFII(S)	100	262 / 262	ABOLOA010000077.1 Salmonella enterica strain PNUSAS396472 SAMN38036888-rid20011463.denovo.081, whole genome shotgun sequence	618..879																																									avrA	ABOLOA010000008.1	39999..40867	100	869	0						
GCA_033150715.1_PDT001962240.1_genomic.fna	Salmonella_enterica	0.5212	223.085 KB	8	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLNZ010000003.1 Salmonella enterica strain PNUSAS396475 SAMN38036886-rid20014823.denovo.03, whole genome shotgun sequence	145193..145630	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	100	438/438	ABOLNZ010000086.1 Salmonella enterica strain PNUSAS396475 SAMN38036886-rid20014823.guided.25, whole genome shotgun sequence	42425..42862	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	523 / 643	ABOLNZ010000073.1 Salmonella enterica strain PNUSAS396475 SAMN38036886-rid20014823.denovo.76, whole genome shotgun sequence	1..523	enterobacteriales	IncFII(S)	100	262 / 262	ABOLNZ010000076.1 Salmonella enterica strain PNUSAS396475 SAMN38036886-rid20014823.denovo.79, whole genome shotgun sequence	192..453																																																avrA	ABOLNZ010000001.1	450793..451662	99.885	870	0						
GCA_033150735.1_PDT001962239.1_genomic.fna	Salmonella_enterica	0.521	373.291 KB	5	aroC_13,dnaN_11,hemD_16,hisD_15,purE_12,sucA_15,thrA_4	23	7:m,t:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_11	hemD	100	100	hemD_16	hisD	100	100	hisD_15	purE	100	100	purE_12	sucA	100	100	sucA_15	thrA	100	100	thrA_4	7	m,t	-	Salmonella enterica subspecies enterica (subspecies I)	Oranienburg		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLNW010000003.1 Salmonella enterica strain PNUSAS396479 SAMN38036894-rid20019473.denovo.03, whole genome shotgun sequence	414522..414959	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLNW010000029.1 Salmonella enterica strain PNUSAS396479 SAMN38036894-rid20019473.guided.20, whole genome shotgun sequence	16426..16863	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																																						
GCA_033150935.1_PDT001962230.1_genomic.fna	Salmonella_enterica	0.5203	454.052 KB	4	aroC_13,dnaN_12,hemD_17,hisD_16,purE_13,sucA_16,thrA_4	24	9:l,z28:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_13	dnaN	100	100	dnaN_12	hemD	100	100	hemD_17	hisD	100	100	hisD_16	purE	100	100	purE_13	sucA	100	100	sucA_16	thrA	100	100	thrA_4	9	l,z28	1,5	Salmonella enterica subspecies enterica (subspecies I)	Javiana		O	H1_fliC	H2_fljB	aac(6')-Iaa	96.58	438/438	ABOLOH010000002.1 Salmonella enterica strain PNUSAS396432 SAMN38035973-rid20014803.denovo.02, whole genome shotgun sequence	136617..137054	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.58	438/438	ABOLOH010000022.1 Salmonella enterica strain PNUSAS396432 SAMN38035973-rid20014803.guided.09, whole genome shotgun sequence	42383..42820	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLOH010000003.1	496410..497278	99.425	870	0						
GCA_033150975.1_PDT001962229.1_genomic.fna	Salmonella_enterica	0.5206	402.894 KB	3	aroC_16,dnaN_2,hemD_45,hisD_43,purE_36,sucA_39,thrA_42	118	8:e,h:1,2	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_16	dnaN	100	100	dnaN_2	hemD	100	100	hemD_45	hisD	100	100	hisD_43	purE	100	100	purE_36	sucA	100	100	sucA_39	thrA	100	100	thrA_42	8	e,h	1,2	Salmonella enterica subspecies enterica (subspecies I)	Newport		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	ABOLOI010000001.1 Salmonella enterica strain PNUSAS396402 SAMN38035979-rid20019463.denovo.01, whole genome shotgun sequence	1369419..1369856	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.63	438/438	ABOLOI010000026.1 Salmonella enterica strain PNUSAS396402 SAMN38035979-rid20019463.guided.20, whole genome shotgun sequence	3078..3515	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLOI010000009.1	140191..141059	99.195	870	0						
GCA_033150995.1_PDT001962228.1_genomic.fna	Salmonella_enterica	0.5217	332.264 KB	5	aroC_347,dnaN_394,hemD_78,hisD_496,purE_426,sucA_9,thrA_102	1549	8:r:z6	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_347	dnaN	100	100	dnaN_394	hemD	100	100	hemD_78	hisD	100	100	hisD_496	purE	100	100	purE_426	sucA	100	100	sucA_9	thrA	100	100	thrA_102	8	r	z6	Salmonella enterica subspecies enterica (subspecies I)	Altona		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	ABOLOJ010000001.1 Salmonella enterica strain PNUSAS396434 SAMN38035986-rid20016113.denovo.01, whole genome shotgun sequence	736221..736658	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.95	438/438	ABOLOJ010000034.1 Salmonella enterica strain PNUSAS396434 SAMN38035986-rid20016113.guided.17, whole genome shotgun sequence	16433..16870	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLOJ010000004.1	401170..402039	99.195	870	0						
GCA_033151015.1_PDT001962226.1_genomic.fna	Salmonella_enterica	0.5205	93.063 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQE010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00017179 SAMN37985377-rid20016103.denovo.005, whole genome shotgun sequence	12895..13329	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQE010000101.1 TPA_asm: Salmonella enterica strain AUSMDU00017179 SAMN37985377-rid20016103.guided.061, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151075.1_PDT001962225.1_genomic.fna	Salmonella_enterica	0.5207	75.87 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQD010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00017198 SAMN37985378-rid20014793.denovo.004, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQD010000112.1 TPA_asm: Salmonella enterica strain AUSMDU00017198 SAMN37985378-rid20014793.guided.064, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151095.1_PDT001962224.1_genomic.fna	Salmonella_enterica	0.5202	102.587 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQF010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00017313 SAMN37985379-rid20018433.denovo.004, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQF010000101.1 TPA_asm: Salmonella enterica strain AUSMDU00017313 SAMN37985379-rid20018433.guided.037, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151115.1_PDT001962223.1_genomic.fna	Salmonella_enterica	0.5201	135.812 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQG010000019.1 TPA_asm: Salmonella enterica strain AUSMDU00017301 SAMN37985380-rid20017353.denovo.19, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQG010000080.1 TPA_asm: Salmonella enterica strain AUSMDU00017301 SAMN37985380-rid20017353.guided.36, whole genome shotgun sequence	15477..15911	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151135.1_PDT001962221.1_genomic.fna	Salmonella_enterica	0.5207	79.111 KB	22	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQI010000025.1 TPA_asm: Salmonella enterica strain AUSMDU00016871 SAMN37985382-rid20017343.denovo.025, whole genome shotgun sequence	12859..13293	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQI010000123.1 TPA_asm: Salmonella enterica strain AUSMDU00016871 SAMN37985382-rid20017343.guided.058, whole genome shotgun sequence	14542..14976	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151155.1_PDT001962222.1_genomic.fna	Salmonella_enterica	0.5199	143.153 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQH010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00018742 SAMN37985381-rid20011443.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQH010000073.1 TPA_asm: Salmonella enterica strain AUSMDU00018742 SAMN37985381-rid20011443.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151175.1_PDT001962220.1_genomic.fna	Salmonella_enterica	0.5201	110.449 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQK010000024.1 TPA_asm: Salmonella enterica strain AUSMDU00017300 SAMN37985383-rid20014783.denovo.24, whole genome shotgun sequence	12864..13298	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQK010000092.1 TPA_asm: Salmonella enterica strain AUSMDU00017300 SAMN37985383-rid20014783.guided.52, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151195.1_PDT001962218.1_genomic.fna	Salmonella_enterica	0.5201	107.083 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQL010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051964 SAMN37985043-rid20017333.denovo.07, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQL010000091.1 TPA_asm: Salmonella enterica strain AUSMDU00051964 SAMN37985043-rid20017333.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151215.1_PDT001962219.1_genomic.fna	Salmonella_enterica	0.5201	101.266 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQJ010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017303 SAMN37985384-rid20019453.denovo.006, whole genome shotgun sequence	12887..13321	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQJ010000103.1 TPA_asm: Salmonella enterica strain AUSMDU00017303 SAMN37985384-rid20019453.guided.038, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151235.1_PDT001962217.1_genomic.fna	Salmonella_enterica	0.5203	109.277 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQM010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017307 SAMN37985385-rid20013053.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQM010000096.1 TPA_asm: Salmonella enterica strain AUSMDU00017307 SAMN37985385-rid20013053.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151255.1_PDT001962216.1_genomic.fna	Salmonella_enterica	0.5207	69.644 KB	24	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQN010000025.1 TPA_asm: Salmonella enterica strain AUSMDU00017168 SAMN37985386-rid20016093.denovo.025, whole genome shotgun sequence	12854..13288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQN010000123.1 TPA_asm: Salmonella enterica strain AUSMDU00017168 SAMN37985386-rid20016093.guided.058, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151275.1_PDT001962215.1_genomic.fna	Salmonella_enterica	0.5205	80.703 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQO010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00016869 SAMN37985387-rid20014773.denovo.004, whole genome shotgun sequence	12860..13294	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQO010000106.1 TPA_asm: Salmonella enterica strain AUSMDU00016869 SAMN37985387-rid20014773.guided.073, whole genome shotgun sequence	15713..16147	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151295.1_PDT001962213.1_genomic.fna	Salmonella_enterica	0.5201	106.554 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQQ010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00017296 SAMN37985389-rid20014763.denovo.07, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQQ010000094.1 TPA_asm: Salmonella enterica strain AUSMDU00017296 SAMN37985389-rid20014763.guided.38, whole genome shotgun sequence	15844..16278	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151315.1_PDT001962214.1_genomic.fna	Salmonella_enterica	0.5201	137.25 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQP010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017312 SAMN37985388-rid20018423.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQP010000083.1 TPA_asm: Salmonella enterica strain AUSMDU00017312 SAMN37985388-rid20018423.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151335.1_PDT001962212.1_genomic.fna	Salmonella_enterica	0.5202	98.849 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQS010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00017305 SAMN37985390-rid20011433.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQS010000098.1 TPA_asm: Salmonella enterica strain AUSMDU00017305 SAMN37985390-rid20011433.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151355.1_PDT001962211.1_genomic.fna	Salmonella_enterica	0.5203	101.94 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQR010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00018578 SAMN37985391-rid20017323.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQR010000087.1 TPA_asm: Salmonella enterica strain AUSMDU00018578 SAMN37985391-rid20017323.guided.57, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151375.1_PDT001962210.1_genomic.fna	Salmonella_enterica	0.5201	109.129 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQU010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00017317 SAMN37985392-rid20014753.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQU010000094.1 TPA_asm: Salmonella enterica strain AUSMDU00017317 SAMN37985392-rid20014753.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151395.1_PDT001962209.1_genomic.fna	Salmonella_enterica	0.5208	73.337 KB	23	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQT010000018.1 TPA_asm: Salmonella enterica strain AUSMDU00017175 SAMN37985393-rid20019443.denovo.018, whole genome shotgun sequence	12854..13288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQT010000129.1 TPA_asm: Salmonella enterica strain AUSMDU00017175 SAMN37985393-rid20019443.guided.059, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151415.1_PDT001962208.1_genomic.fna	Salmonella_enterica	0.521	75.137 KB	22	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQV010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00017174 SAMN37985394-rid20014743.denovo.003, whole genome shotgun sequence	12840..13274	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQV010000123.1 TPA_asm: Salmonella enterica strain AUSMDU00017174 SAMN37985394-rid20014743.guided.062, whole genome shotgun sequence	13876..14310	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151435.1_PDT001962207.1_genomic.fna	Salmonella_enterica	0.5202	106.644 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQW010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051962 SAMN37985044-rid20011423.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQW010000097.1 TPA_asm: Salmonella enterica strain AUSMDU00051962 SAMN37985044-rid20011423.guided.46, whole genome shotgun sequence	7393..7827	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151455.1_PDT001962206.1_genomic.fna	Salmonella_enterica	0.5201	96.89 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQX010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00017181 SAMN37985395-rid20017313.denovo.005, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQX010000101.1 TPA_asm: Salmonella enterica strain AUSMDU00017181 SAMN37985395-rid20017313.guided.041, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151475.1_PDT001962205.1_genomic.fna	Salmonella_enterica	0.5208	97.868 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQY010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00018550 SAMN37985396-rid20013043.denovo.006, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQY010000111.1 TPA_asm: Salmonella enterica strain AUSMDU00018550 SAMN37985396-rid20013043.guided.072, whole genome shotgun sequence	3162..3596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151495.1_PDT001962204.1_genomic.fna	Salmonella_enterica	0.5198	110.406 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRQZ010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00016831 SAMN37985397-rid20018413.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRQZ010000086.1 TPA_asm: Salmonella enterica strain AUSMDU00016831 SAMN37985397-rid20018413.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151515.1_PDT001962202.1_genomic.fna	Salmonella_enterica	0.5204	80.325 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRB010000002.1 TPA_asm: Salmonella enterica strain AUSMDU00016820 SAMN37985399-rid20013023.denovo.002, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRB010000104.1 TPA_asm: Salmonella enterica strain AUSMDU00016820 SAMN37985399-rid20013023.guided.049, whole genome shotgun sequence	7618..8052	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151535.1_PDT001962203.1_genomic.fna	Salmonella_enterica	0.5205	96.953 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRA010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00017321 SAMN37985398-rid20013033.denovo.005, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRA010000106.1 TPA_asm: Salmonella enterica strain AUSMDU00017321 SAMN37985398-rid20013033.guided.038, whole genome shotgun sequence	14093..14527	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151555.1_PDT001962201.1_genomic.fna	Salmonella_enterica	0.5201	97.724 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRC010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017711 SAMN37985400-rid20016083.denovo.06, whole genome shotgun sequence	12895..13329	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRC010000097.1 TPA_asm: Salmonella enterica strain AUSMDU00017711 SAMN37985400-rid20016083.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151575.1_PDT001962200.1_genomic.fna	Salmonella_enterica	0.5197	146.725 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRD010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00016837 SAMN37985401-rid20014733.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRD010000070.1 TPA_asm: Salmonella enterica strain AUSMDU00016837 SAMN37985401-rid20014733.guided.43, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151595.1_PDT001962199.1_genomic.fna	Salmonella_enterica	0.5205	79.12 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRE010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00018579 SAMN37985402-rid20011413.denovo.004, whole genome shotgun sequence	12874..13308	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRE010000117.1 TPA_asm: Salmonella enterica strain AUSMDU00018579 SAMN37985402-rid20011413.guided.060, whole genome shotgun sequence	3162..3596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151615.1_PDT001962197.1_genomic.fna	Salmonella_enterica	0.5199	185.197 KB	9	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRG010000010.1 TPA_asm: Salmonella enterica strain AUSMDU00016845 SAMN37985404-rid20011403.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRG010000057.1 TPA_asm: Salmonella enterica strain AUSMDU00016845 SAMN37985404-rid20011403.guided.27, whole genome shotgun sequence	15521..15955	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151635.1_PDT001962194.1_genomic.fna	Salmonella_enterica	0.5199	109.236 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRJ010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00017197 SAMN37985405-rid20019433.denovo.07, whole genome shotgun sequence	12869..13303	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRJ010000097.1 TPA_asm: Salmonella enterica strain AUSMDU00017197 SAMN37985405-rid20019433.guided.48, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151655.1_PDT001962198.1_genomic.fna	Salmonella_enterica	0.5202	104.395 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRF010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00017326 SAMN37985403-rid20014723.denovo.004, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRF010000101.1 TPA_asm: Salmonella enterica strain AUSMDU00017326 SAMN37985403-rid20014723.guided.056, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151665.1_PDT001962195.1_genomic.fna	Salmonella_enterica	0.5201	97.724 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRI010000016.1 TPA_asm: Salmonella enterica strain AUSMDU00049600 SAMN37985045-rid20013013.denovo.16, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRI010000096.1 TPA_asm: Salmonella enterica strain AUSMDU00049600 SAMN37985045-rid20013013.guided.39, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151695.1_PDT001962196.1_genomic.fna	Salmonella_enterica	0.5204	84.246 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRH010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00051916 SAMN37985009-rid20017303.denovo.003, whole genome shotgun sequence	12897..13331	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRH010000111.1 TPA_asm: Salmonella enterica strain AUSMDU00051916 SAMN37985009-rid20017303.guided.038, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151715.1_PDT001962192.1_genomic.fna	Salmonella_enterica	0.5201	144.185 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRK010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00017196 SAMN37985407-rid20011393.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRK010000072.1 TPA_asm: Salmonella enterica strain AUSMDU00017196 SAMN37985407-rid20011393.guided.31, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151735.1_PDT001962193.1_genomic.fna	Salmonella_enterica	0.5204	100.602 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRL010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00017334 SAMN37985406-rid20013003.denovo.07, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRL010000090.1 TPA_asm: Salmonella enterica strain AUSMDU00017334 SAMN37985406-rid20013003.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151755.1_PDT001962191.1_genomic.fna	Salmonella_enterica	0.5199	114.501 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRM010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00017201 SAMN37985408-rid20016073.denovo.08, whole genome shotgun sequence	12859..13293	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRM010000091.1 TPA_asm: Salmonella enterica strain AUSMDU00017201 SAMN37985408-rid20016073.guided.51, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151775.1_PDT001962190.1_genomic.fna	Salmonella_enterica	0.5202	135.417 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRN010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00017297 SAMN37985409-rid20014713.denovo.05, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRN010000079.1 TPA_asm: Salmonella enterica strain AUSMDU00017297 SAMN37985409-rid20014713.guided.52, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151785.1_PDT001962189.1_genomic.fna	Salmonella_enterica	0.5202	137.222 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRO010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017295 SAMN37985410-rid20011383.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRO010000082.1 TPA_asm: Salmonella enterica strain AUSMDU00017295 SAMN37985410-rid20011383.guided.45, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151815.1_PDT001962188.1_genomic.fna	Salmonella_enterica	0.5204	96.638 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRP010000026.1 TPA_asm: Salmonella enterica strain AUSMDU00017324 SAMN37985411-rid20014703.denovo.027, whole genome shotgun sequence	12847..13281	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRP010000101.1 TPA_asm: Salmonella enterica strain AUSMDU00017324 SAMN37985411-rid20014703.guided.053, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151855.1_PDT001962187.1_genomic.fna	Salmonella_enterica	0.5205	80.54 KB	21	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRS010000017.1 TPA_asm: Salmonella enterica strain AUSMDU00018577 SAMN37985412-rid20011373.denovo.017, whole genome shotgun sequence	12864..13298	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRS010000103.1 TPA_asm: Salmonella enterica strain AUSMDU00018577 SAMN37985412-rid20011373.guided.062, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151875.1_PDT001962185.1_genomic.fna	Salmonella_enterica	0.5202	135.271 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRT010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00016839 SAMN37985414-rid20012993.denovo.06, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRT010000074.1 TPA_asm: Salmonella enterica strain AUSMDU00016839 SAMN37985414-rid20012993.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151895.1_PDT001962184.1_genomic.fna	Salmonella_enterica	0.5199	135.417 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRU010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00049604 SAMN37985046-rid20019423.denovo.05, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRU010000084.1 TPA_asm: Salmonella enterica strain AUSMDU00049604 SAMN37985046-rid20019423.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151915.1_PDT001962186.1_genomic.fna	Salmonella_enterica	0.5202	143.631 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRR010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00016842 SAMN37985413-rid20017293.denovo.08, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRR010000078.1 TPA_asm: Salmonella enterica strain AUSMDU00016842 SAMN37985413-rid20017293.guided.38, whole genome shotgun sequence	7372..7806	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151935.1_PDT001962182.1_genomic.fna	Salmonella_enterica	0.5201	114.562 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRW010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00017173 SAMN37985416-rid20012973.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRW010000083.1 TPA_asm: Salmonella enterica strain AUSMDU00017173 SAMN37985416-rid20012973.guided.48, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151955.1_PDT001962183.1_genomic.fna	Salmonella_enterica	0.5204	97.724 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRV010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00017172 SAMN37985415-rid20012983.denovo.004, whole genome shotgun sequence	12854..13288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRV010000102.1 TPA_asm: Salmonella enterica strain AUSMDU00017172 SAMN37985415-rid20012983.guided.055, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151975.1_PDT001962181.1_genomic.fna	Salmonella_enterica	0.5201	98.566 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRX010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00016832 SAMN37985417-rid20016063.denovo.005, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRX010000101.1 TPA_asm: Salmonella enterica strain AUSMDU00016832 SAMN37985417-rid20016063.guided.051, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033151995.1_PDT001962179.1_genomic.fna	Salmonella_enterica	0.5204	64.063 KB	21	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRY010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00017331 SAMN37985419-rid20018403.denovo.005, whole genome shotgun sequence	12858..13292	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRY010000127.1 TPA_asm: Salmonella enterica strain AUSMDU00017331 SAMN37985419-rid20018403.guided.059, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152015.1_PDT001962178.1_genomic.fna	Salmonella_enterica	0.5201	143.413 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRRZ010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00017335 SAMN37985420-rid20014693.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRRZ010000085.1 TPA_asm: Salmonella enterica strain AUSMDU00017335 SAMN37985420-rid20014693.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152055.1_PDT001962180.1_genomic.fna	Salmonella_enterica	0.5205	96.897 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSB010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00017333 SAMN37985418-rid20012963.denovo.007, whole genome shotgun sequence	12854..13288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSB010000111.1 TPA_asm: Salmonella enterica strain AUSMDU00017333 SAMN37985418-rid20012963.guided.047, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152075.1_PDT001962177.1_genomic.fna	Salmonella_enterica	0.5198	129.466 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSA010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00018571 SAMN37985421-rid20011363.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSA010000083.1 TPA_asm: Salmonella enterica strain AUSMDU00018571 SAMN37985421-rid20011363.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152095.1_PDT001962176.1_genomic.fna	Salmonella_enterica	0.5205	64.695 KB	23	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSC010000002.1 TPA_asm: Salmonella enterica strain AUSMDU00017316 SAMN37985422-rid20017283.denovo.002, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSC010000127.1 TPA_asm: Salmonella enterica strain AUSMDU00017316 SAMN37985422-rid20017283.guided.041, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152115.1_PDT001962175.1_genomic.fna	Salmonella_enterica	0.5206	77.299 KB	22	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSD010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00017322 SAMN37985423-rid20011353.denovo.003, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSD010000121.1 TPA_asm: Salmonella enterica strain AUSMDU00017322 SAMN37985423-rid20011353.guided.052, whole genome shotgun sequence	9308..9742	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152135.1_PDT001962174.1_genomic.fna	Salmonella_enterica	0.5198	144.445 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSE010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00051064 SAMN37985076-rid20019413.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSE010000074.1 TPA_asm: Salmonella enterica strain AUSMDU00051064 SAMN37985076-rid20019413.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152155.1_PDT001962173.1_genomic.fna	Salmonella_enterica	0.52	121.376 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSF010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00052656 SAMN37985077-rid20012953.denovo.05, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSF010000087.1 TPA_asm: Salmonella enterica strain AUSMDU00052656 SAMN37985077-rid20012953.guided.46, whole genome shotgun sequence	1984..2418	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152175.1_PDT001962172.1_genomic.fna	Salmonella_enterica	0.5202	82.624 KB	21	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSG010000002.1 TPA_asm: Salmonella enterica strain AUSMDU00049598 SAMN37985078-rid20012943.denovo.002, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSG010000115.1 TPA_asm: Salmonella enterica strain AUSMDU00049598 SAMN37985078-rid20012943.guided.043, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152195.1_PDT001962171.1_genomic.fna	Salmonella_enterica	0.5201	98.806 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSJ010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00049607 SAMN37985079-rid20016053.denovo.03, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSJ010000097.1 TPA_asm: Salmonella enterica strain AUSMDU00049607 SAMN37985079-rid20016053.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152215.1_PDT001962170.1_genomic.fna	Salmonella_enterica	0.5206	62.84 KB	25	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSI010000021.1 TPA_asm: Salmonella enterica strain AUSMDU00049616 SAMN37985080-rid20012933.denovo.021, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSI010000136.1 TPA_asm: Salmonella enterica strain AUSMDU00049616 SAMN37985080-rid20012933.guided.044, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152235.1_PDT001962169.1_genomic.fna	Salmonella_enterica	0.5203	79.898 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSH010000016.1 TPA_asm: Salmonella enterica strain AUSMDU00049606 SAMN37985081-rid20018393.denovo.016, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSH010000114.1 TPA_asm: Salmonella enterica strain AUSMDU00049606 SAMN37985081-rid20018393.guided.041, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152255.1_PDT001962168.1_genomic.fna	Salmonella_enterica	0.52	109.244 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSK010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00049605 SAMN37985082-rid20014683.denovo.06, whole genome shotgun sequence	12874..13308	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSK010000089.1 TPA_asm: Salmonella enterica strain AUSMDU00049605 SAMN37985082-rid20014683.guided.39, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152275.1_PDT001962167.1_genomic.fna	Salmonella_enterica	0.5202	143.691 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSL010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00037697 SAMN37985083-rid20011343.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSL010000081.1 TPA_asm: Salmonella enterica strain AUSMDU00037697 SAMN37985083-rid20011343.guided.36, whole genome shotgun sequence	7469..7903	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152295.1_PDT001962163.1_genomic.fna	Salmonella_enterica	0.5202	113.336 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSR010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00049596 SAMN37985086-rid20014673.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSR010000086.1 TPA_asm: Salmonella enterica strain AUSMDU00049596 SAMN37985086-rid20014673.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152315.1_PDT001962166.1_genomic.fna	Salmonella_enterica	0.5201	113.336 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSM010000018.1 TPA_asm: Salmonella enterica strain AUSMDU00037693 SAMN37985084-rid20017273.denovo.18, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSM010000082.1 TPA_asm: Salmonella enterica strain AUSMDU00037693 SAMN37985084-rid20017273.guided.50, whole genome shotgun sequence	13980..14414	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152335.1_PDT001962165.1_genomic.fna	Salmonella_enterica	0.5197	144.445 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSN010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051938 SAMN37985013-rid20011333.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSN010000065.1 TPA_asm: Salmonella enterica strain AUSMDU00051938 SAMN37985013-rid20011333.guided.31, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152345.1_PDT001962164.1_genomic.fna	Salmonella_enterica	0.5198	128.945 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSP010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051059 SAMN37985085-rid20019403.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSP010000081.1 TPA_asm: Salmonella enterica strain AUSMDU00051059 SAMN37985085-rid20019403.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152375.1_PDT001962162.1_genomic.fna	Salmonella_enterica	0.5202	101.254 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSQ010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00049595 SAMN37985087-rid20012923.denovo.06, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSQ010000099.1 TPA_asm: Salmonella enterica strain AUSMDU00049595 SAMN37985087-rid20012923.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152395.1_PDT001962160.1_genomic.fna	Salmonella_enterica	0.5197	152.545 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSS010000010.1 TPA_asm: Salmonella enterica strain AUSMDU00051054 SAMN37985089-rid20012913.denovo.10, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSS010000065.1 TPA_asm: Salmonella enterica strain AUSMDU00051054 SAMN37985089-rid20012913.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152415.1_PDT001962161.1_genomic.fna	Salmonella_enterica	0.5203	110.361 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSO010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00049617 SAMN37985088-rid20016043.denovo.09, whole genome shotgun sequence	12873..13307	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSO010000092.1 TPA_asm: Salmonella enterica strain AUSMDU00049617 SAMN37985088-rid20016043.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152435.1_PDT001962159.1_genomic.fna	Salmonella_enterica	0.5201	129.465 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRST010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00049602 SAMN37985090-rid20018383.denovo.09, whole genome shotgun sequence	12905..13339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRST010000088.1 TPA_asm: Salmonella enterica strain AUSMDU00049602 SAMN37985090-rid20018383.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152455.1_PDT001962157.1_genomic.fna	Salmonella_enterica	0.5204	97.724 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSV010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00052658 SAMN37985092-rid20011323.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSV010000099.1 TPA_asm: Salmonella enterica strain AUSMDU00052658 SAMN37985092-rid20011323.guided.60, whole genome shotgun sequence	14098..14532	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152475.1_PDT001962158.1_genomic.fna	Salmonella_enterica	0.5199	135.417 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSU010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051060 SAMN37985091-rid20014663.denovo.07, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSU010000072.1 TPA_asm: Salmonella enterica strain AUSMDU00051060 SAMN37985091-rid20014663.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152495.1_PDT001962154.1_genomic.fna	Salmonella_enterica	0.52	102.586 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSZ010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00051965 SAMN37985014-rid20019393.denovo.03, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSZ010000095.1 TPA_asm: Salmonella enterica strain AUSMDU00051965 SAMN37985014-rid20019393.guided.41, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152515.1_PDT001962155.1_genomic.fna	Salmonella_enterica	0.5198	143.152 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSX010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00050963 SAMN37985094-rid20011313.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSX010000069.1 TPA_asm: Salmonella enterica strain AUSMDU00050963 SAMN37985094-rid20011313.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152535.1_PDT001962156.1_genomic.fna	Salmonella_enterica	0.5199	114.556 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSW010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051914 SAMN37985093-rid20017263.denovo.07, whole genome shotgun sequence	12869..13303	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSW010000086.1 TPA_asm: Salmonella enterica strain AUSMDU00051914 SAMN37985093-rid20017263.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152555.1_PDT001962153.1_genomic.fna	Salmonella_enterica	0.5203	108.14 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRSY010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051056 SAMN37985095-rid20012903.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRSY010000090.1 TPA_asm: Salmonella enterica strain AUSMDU00051056 SAMN37985095-rid20012903.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152575.1_PDT001962152.1_genomic.fna	Salmonella_enterica	0.5203	113.336 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTA010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00051917 SAMN37985096-rid20019383.denovo.006, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTA010000101.1 TPA_asm: Salmonella enterica strain AUSMDU00051917 SAMN37985096-rid20019383.guided.035, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152595.1_PDT001962150.1_genomic.fna	Salmonella_enterica	0.5203	98.795 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTC010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00051063 SAMN37985098-rid20012893.denovo.06, whole genome shotgun sequence	12870..13304	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTC010000094.1 TPA_asm: Salmonella enterica strain AUSMDU00051063 SAMN37985098-rid20012893.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152615.1_PDT001962151.1_genomic.fna	Salmonella_enterica	0.5204	100.541 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTB010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051915 SAMN37985097-rid20016033.denovo.005, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTB010000100.1 TPA_asm: Salmonella enterica strain AUSMDU00051915 SAMN37985097-rid20016033.guided.037, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152635.1_PDT001962149.1_genomic.fna	Salmonella_enterica	0.5208	97.724 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTD010000018.1 TPA_asm: Salmonella enterica strain AUSMDU00037694 SAMN37985099-rid20018373.denovo.018, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTD010000100.1 TPA_asm: Salmonella enterica strain AUSMDU00037694 SAMN37985099-rid20018373.guided.055, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152655.1_PDT001962148.1_genomic.fna	Salmonella_enterica	0.5207	94.837 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTE010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00051945 SAMN37985100-rid20014653.denovo.003, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTE010000103.1 TPA_asm: Salmonella enterica strain AUSMDU00051945 SAMN37985100-rid20014653.guided.039, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152675.1_PDT001962147.1_genomic.fna	Salmonella_enterica	0.5201	97.724 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTH010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00049615 SAMN37985101-rid20018363.denovo.006, whole genome shotgun sequence	12860..13294	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTH010000107.1 TPA_asm: Salmonella enterica strain AUSMDU00049615 SAMN37985101-rid20018363.guided.038, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152695.1_PDT001962144.1_genomic.fna	Salmonella_enterica	0.5198	144.185 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTI010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00051956 SAMN37985104-rid20019373.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTI010000069.1 TPA_asm: Salmonella enterica strain AUSMDU00051956 SAMN37985104-rid20019373.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152715.1_PDT001962146.1_genomic.fna	Salmonella_enterica	0.52	129.466 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTG010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00051065 SAMN37985102-rid20017253.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTG010000077.1 TPA_asm: Salmonella enterica strain AUSMDU00051065 SAMN37985102-rid20017253.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152735.1_PDT001962143.1_genomic.fna	Salmonella_enterica	0.52	109.843 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTJ010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051606 SAMN37985135-rid20014643.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTJ010000086.1 TPA_asm: Salmonella enterica strain AUSMDU00051606 SAMN37985135-rid20014643.guided.40, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152755.1_PDT001962145.1_genomic.fna	Salmonella_enterica	0.52	109.253 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTF010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00051959 SAMN37985103-rid20011303.denovo.06, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTF010000097.1 TPA_asm: Salmonella enterica strain AUSMDU00051959 SAMN37985103-rid20011303.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152775.1_PDT001962142.1_genomic.fna	Salmonella_enterica	0.52	110.322 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTK010000021.1 TPA_asm: Salmonella enterica strain AUSMDU00051918 SAMN37985136-rid20019363.denovo.21, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTK010000090.1 TPA_asm: Salmonella enterica strain AUSMDU00051918 SAMN37985136-rid20019363.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152815.1_PDT001962141.1_genomic.fna	Salmonella_enterica	0.5198	144.445 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTL010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00051932 SAMN37985137-rid20016023.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTL010000074.1 TPA_asm: Salmonella enterica strain AUSMDU00051932 SAMN37985137-rid20016023.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152835.1_PDT001962140.1_genomic.fna	Salmonella_enterica	0.5207	65.583 KB	23	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTP010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051433 SAMN37985138-rid20012883.denovo.005, whole genome shotgun sequence	12860..13294	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTP010000138.1 TPA_asm: Salmonella enterica strain AUSMDU00051433 SAMN37985138-rid20012883.guided.061, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152855.1_PDT001962137.1_genomic.fna	Salmonella_enterica	0.5202	134.993 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTO010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00037638 SAMN37985141-rid20018343.denovo.05, whole genome shotgun sequence	30067..30501	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTO010000080.1 TPA_asm: Salmonella enterica strain AUSMDU00037638 SAMN37985141-rid20018343.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152875.1_PDT001962139.1_genomic.fna	Salmonella_enterica	0.5199	143.215 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTM010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00037655 SAMN37985139-rid20018353.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTM010000068.1 TPA_asm: Salmonella enterica strain AUSMDU00037655 SAMN37985139-rid20018353.guided.45, whole genome shotgun sequence	12996..13430	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152895.1_PDT001962138.1_genomic.fna	Salmonella_enterica	0.5202	114.565 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTN010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00037643 SAMN37985140-rid20014633.denovo.03, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTN010000084.1 TPA_asm: Salmonella enterica strain AUSMDU00037643 SAMN37985140-rid20014633.guided.37, whole genome shotgun sequence	15859..16293	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152915.1_PDT001962136.1_genomic.fna	Salmonella_enterica	0.5197	145.219 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTQ010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00037639 SAMN37985142-rid20017243.denovo.08, whole genome shotgun sequence	29908..30342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTQ010000069.1 TPA_asm: Salmonella enterica strain AUSMDU00037639 SAMN37985142-rid20017243.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152935.1_PDT001962135.1_genomic.fna	Salmonella_enterica	0.52	143.418 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTR010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00037660 SAMN37985143-rid20011293.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTR010000068.1 TPA_asm: Salmonella enterica strain AUSMDU00037660 SAMN37985143-rid20011293.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152955.1_PDT001962132.1_genomic.fna	Salmonella_enterica	0.52	138.65 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTV010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00037676 SAMN37985145-rid20019343.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTV010000075.1 TPA_asm: Salmonella enterica strain AUSMDU00037676 SAMN37985145-rid20019343.guided.30, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152975.1_PDT001962134.1_genomic.fna	Salmonella_enterica	0.5198	135.417 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTS010000015.1 TPA_asm: Salmonella enterica strain AUSMDU00051602 SAMN37985144-rid20019353.denovo.15, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTS010000074.1 TPA_asm: Salmonella enterica strain AUSMDU00051602 SAMN37985144-rid20019353.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033152985.1_PDT001962133.1_genomic.fna	Salmonella_enterica	0.52	97.724 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTU010000018.1 TPA_asm: Salmonella enterica strain AUSMDU00049612 SAMN37985019-rid20014623.denovo.18, whole genome shotgun sequence	12874..13308	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTU010000098.1 TPA_asm: Salmonella enterica strain AUSMDU00049612 SAMN37985019-rid20014623.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153015.1_PDT001962131.1_genomic.fna	Salmonella_enterica	0.52	153.394 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTT010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00037649 SAMN37985146-rid20016013.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTT010000060.1 TPA_asm: Salmonella enterica strain AUSMDU00037649 SAMN37985146-rid20016013.guided.29, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153035.1_PDT001962130.1_genomic.fna	Salmonella_enterica	0.5205	97.724 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTW010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00037679 SAMN37985147-rid20011283.denovo.004, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTW010000100.1 TPA_asm: Salmonella enterica strain AUSMDU00037679 SAMN37985147-rid20011283.guided.037, whole genome shotgun sequence	14147..14581	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153055.1_PDT001962129.1_genomic.fna	Salmonella_enterica	0.5203	101.94 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTX010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051471 SAMN37985148-rid20018333.denovo.04, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTX010000096.1 TPA_asm: Salmonella enterica strain AUSMDU00051471 SAMN37985148-rid20018333.guided.55, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153075.1_PDT001962128.1_genomic.fna	Salmonella_enterica	0.5201	145.763 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTY010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00037641 SAMN37985149-rid20012873.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTY010000064.1 TPA_asm: Salmonella enterica strain AUSMDU00037641 SAMN37985149-rid20012873.guided.30, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153135.1_PDT001962123.1_genomic.fna	Salmonella_enterica	0.5201	144.445 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUC010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051929 SAMN37985154-rid20014613.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUC010000070.1 TPA_asm: Salmonella enterica strain AUSMDU00051929 SAMN37985154-rid20014613.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153155.1_PDT001962126.1_genomic.fna	Salmonella_enterica	0.5218	53.219 KB	31	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUA010000017.1 TPA_asm: Salmonella enterica strain AUSMDU00051445 SAMN37985151-rid20016003.denovo.017, whole genome shotgun sequence	7471..7905	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUA010000171.1 TPA_asm: Salmonella enterica strain AUSMDU00051445 SAMN37985151-rid20016003.guided.061, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153175.1_PDT001962125.1_genomic.fna	Salmonella_enterica	0.52	114.511 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUD010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051459 SAMN37985152-rid20012863.denovo.04, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUD010000094.1 TPA_asm: Salmonella enterica strain AUSMDU00051459 SAMN37985152-rid20012863.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153195.1_PDT001962127.1_genomic.fna	Salmonella_enterica	0.5199	135.417 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRTZ010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00037685 SAMN37985150-rid20018323.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRTZ010000078.1 TPA_asm: Salmonella enterica strain AUSMDU00037685 SAMN37985150-rid20018323.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153215.1_PDT001962124.1_genomic.fna	Salmonella_enterica	0.5197	146.725 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUB010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00051599 SAMN37985153-rid20011273.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUB010000065.1 TPA_asm: Salmonella enterica strain AUSMDU00051599 SAMN37985153-rid20011273.guided.35, whole genome shotgun sequence	13247..13681	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153235.1_PDT001962122.1_genomic.fna	Salmonella_enterica	0.5205	97.724 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUE010000010.1 TPA_asm: Salmonella enterica strain AUSMDU00052657 SAMN37985020-rid20017233.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUE010000098.1 TPA_asm: Salmonella enterica strain AUSMDU00052657 SAMN37985020-rid20017233.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153255.1_PDT001962121.1_genomic.fna	Salmonella_enterica	0.5203	79.164 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUF010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051468 SAMN37985155-rid20017223.denovo.005, whole genome shotgun sequence	7506..7940	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUF010000120.1 TPA_asm: Salmonella enterica strain AUSMDU00051468 SAMN37985155-rid20017223.guided.042, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153275.1_PDT001962120.1_genomic.fna	Salmonella_enterica	0.5197	147.305 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUG010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00051461 SAMN37985156-rid20011263.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUG010000065.1 TPA_asm: Salmonella enterica strain AUSMDU00051461 SAMN37985156-rid20011263.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153295.1_PDT001962116.1_genomic.fna	Salmonella_enterica	0.5199	135.419 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUK010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051921 SAMN37985160-rid20015993.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUK010000087.1 TPA_asm: Salmonella enterica strain AUSMDU00051921 SAMN37985160-rid20015993.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153315.1_PDT001962118.1_genomic.fna	Salmonella_enterica	0.5206	75.229 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUI010000022.1 TPA_asm: Salmonella enterica strain AUSMDU00051429 SAMN37985158-rid20012853.denovo.022, whole genome shotgun sequence	12854..13288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUI010000125.1 TPA_asm: Salmonella enterica strain AUSMDU00051429 SAMN37985158-rid20012853.guided.056, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153335.1_PDT001962114.1_genomic.fna	Salmonella_enterica	0.5199	96.96 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUL010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051428 SAMN37985162-rid20015983.denovo.004, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUL010000100.1 TPA_asm: Salmonella enterica strain AUSMDU00051428 SAMN37985162-rid20015983.guided.054, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153355.1_PDT001962111.1_genomic.fna	Salmonella_enterica	0.5198	154.996 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUP010000011.1 TPA_asm: Salmonella enterica strain AUSMDU00037632 SAMN37985194-rid20017203.denovo.11, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUP010000062.1 TPA_asm: Salmonella enterica strain AUSMDU00037632 SAMN37985194-rid20017203.guided.31, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153375.1_PDT001962112.1_genomic.fna	Salmonella_enterica	0.5207	62.84 KB	23	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUO010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00051449 SAMN37985164-rid20011243.denovo.008, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUO010000132.1 TPA_asm: Salmonella enterica strain AUSMDU00051449 SAMN37985164-rid20011243.guided.070, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153395.1_PDT001962113.1_genomic.fna	Salmonella_enterica	0.5197	143.158 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUM010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051931 SAMN37985163-rid20014603.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUM010000067.1 TPA_asm: Salmonella enterica strain AUSMDU00051931 SAMN37985163-rid20014603.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153415.1_PDT001962110.1_genomic.fna	Salmonella_enterica	0.5201	97.186 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUQ010000020.1 TPA_asm: Salmonella enterica strain AUSMDU00049618 SAMN37985024-rid20011233.denovo.20, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUQ010000095.1 TPA_asm: Salmonella enterica strain AUSMDU00049618 SAMN37985024-rid20011233.guided.48, whole genome shotgun sequence	11574..12008	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153435.1_PDT001962107.1_genomic.fna	Salmonella_enterica	0.52	153.394 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUV010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00037671 SAMN37985197-rid20019333.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUV010000063.1 TPA_asm: Salmonella enterica strain AUSMDU00037671 SAMN37985197-rid20019333.guided.35, whole genome shotgun sequence	7749..8183	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153455.1_PDT001962109.1_genomic.fna	Salmonella_enterica	0.5201	155.026 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUS010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00037630 SAMN37985195-rid20017193.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUS010000062.1 TPA_asm: Salmonella enterica strain AUSMDU00037630 SAMN37985195-rid20017193.guided.39, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153475.1_PDT001962106.1_genomic.fna	Salmonella_enterica	0.5202	121.661 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUT010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00037646 SAMN37985198-rid20015973.denovo.07, whole genome shotgun sequence	29908..30342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUT010000082.1 TPA_asm: Salmonella enterica strain AUSMDU00037646 SAMN37985198-rid20015973.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153495.1_PDT001962108.1_genomic.fna	Salmonella_enterica	0.5202	102.53 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUR010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00037652 SAMN37985196-rid20012843.denovo.05, whole genome shotgun sequence	12871..13305	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUR010000098.1 TPA_asm: Salmonella enterica strain AUSMDU00037652 SAMN37985196-rid20012843.guided.52, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153515.1_PDT001962105.1_genomic.fna	Salmonella_enterica	0.5199	143.158 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUU010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00037654 SAMN37985199-rid20012833.denovo.05, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUU010000063.1 TPA_asm: Salmonella enterica strain AUSMDU00037654 SAMN37985199-rid20012833.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153535.1_PDT001962104.1_genomic.fna	Salmonella_enterica	0.5207	75.213 KB	22	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUW010000013.1 TPA_asm: Salmonella enterica strain AUSMDU00037689 SAMN37985200-rid20015963.denovo.013, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUW010000124.1 TPA_asm: Salmonella enterica strain AUSMDU00037689 SAMN37985200-rid20015963.guided.048, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153555.1_PDT001962103.1_genomic.fna	Salmonella_enterica	0.521	70.62 KB	24	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUX010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00037680 SAMN37985201-rid20014593.denovo.003, whole genome shotgun sequence	7575..8009	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUX010000129.1 TPA_asm: Salmonella enterica strain AUSMDU00037680 SAMN37985201-rid20014593.guided.065, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153575.1_PDT001962098.1_genomic.fna	Salmonella_enterica	0.5202	96.992 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVA010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051057 SAMN37985025-rid20012823.denovo.04, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVA010000096.1 TPA_asm: Salmonella enterica strain AUSMDU00051057 SAMN37985025-rid20012823.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153595.1_PDT001962102.1_genomic.fna	Salmonella_enterica	0.5199	135.417 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUY010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051067 SAMN37985202-rid20017183.denovo.07, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUY010000078.1 TPA_asm: Salmonella enterica strain AUSMDU00051067 SAMN37985202-rid20017183.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153615.1_PDT001962097.1_genomic.fna	Salmonella_enterica	0.5202	85.029 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVD010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00037684 SAMN37985205-rid20019323.denovo.004, whole genome shotgun sequence	12860..13294	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVD010000114.1 TPA_asm: Salmonella enterica strain AUSMDU00037684 SAMN37985205-rid20019323.guided.062, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153755.1_PDT001962099.1_genomic.fna	Salmonella_enterica	0.5202	87.727 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVC010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00051958 SAMN37985007-rid20017163.denovo.003, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVC010000109.1 TPA_asm: Salmonella enterica strain AUSMDU00051958 SAMN37985007-rid20017163.guided.040, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153775.1_PDT001962095.1_genomic.fna	Salmonella_enterica	0.5206	97.724 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVF010000025.1 TPA_asm: Salmonella enterica strain AUSMDU00037681 SAMN37985207-rid20012813.denovo.025, whole genome shotgun sequence	12865..13299	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVF010000107.1 TPA_asm: Salmonella enterica strain AUSMDU00037681 SAMN37985207-rid20012813.guided.055, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153795.1_PDT001962093.1_genomic.fna	Salmonella_enterica	0.5204	85.941 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVH010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00037683 SAMN37985209-rid20014583.denovo.007, whole genome shotgun sequence	12842..13276	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVH010000112.1 TPA_asm: Salmonella enterica strain AUSMDU00037683 SAMN37985209-rid20014583.guided.051, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153815.1_PDT001962096.1_genomic.fna	Salmonella_enterica	0.5197	135.825 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVE010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051927 SAMN37985206-rid20015953.denovo.07, whole genome shotgun sequence	30031..30465	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVE010000072.1 TPA_asm: Salmonella enterica strain AUSMDU00051927 SAMN37985206-rid20015953.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153835.1_PDT001962100.1_genomic.fna	Salmonella_enterica	0.5203	135.823 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVB010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00037686 SAMN37985204-rid20011223.denovo.05, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVB010000073.1 TPA_asm: Salmonella enterica strain AUSMDU00037686 SAMN37985204-rid20011223.guided.46, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153955.1_PDT001962091.1_genomic.fna	Salmonella_enterica	0.5199	155.007 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVJ010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00037664 SAMN37985211-rid20014573.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVJ010000059.1 TPA_asm: Salmonella enterica strain AUSMDU00037664 SAMN37985211-rid20014573.guided.29, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153975.1_PDT001962090.1_genomic.fna	Salmonella_enterica	0.5203	137.156 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVK010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00037635 SAMN37985212-rid20011213.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVK010000084.1 TPA_asm: Salmonella enterica strain AUSMDU00037635 SAMN37985212-rid20011213.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033153995.1_PDT001962092.1_genomic.fna	Salmonella_enterica	0.5201	97.186 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVI010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00037663 SAMN37985210-rid20018303.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVI010000094.1 TPA_asm: Salmonella enterica strain AUSMDU00037663 SAMN37985210-rid20018303.guided.39, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154035.1_PDT001962089.1_genomic.fna	Salmonella_enterica	0.5199	129.315 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVL010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00037675 SAMN37985213-rid20017153.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVL010000078.1 TPA_asm: Salmonella enterica strain AUSMDU00037675 SAMN37985213-rid20017153.guided.45, whole genome shotgun sequence	3181..3615	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154055.1_PDT001962088.1_genomic.fna	Salmonella_enterica	0.5209	80.329 KB	21	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVM010000017.1 TPA_asm: Salmonella enterica strain AUSMDU00051439 SAMN37985214-rid20014563.denovo.017, whole genome shotgun sequence	12874..13308	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVM010000128.1 TPA_asm: Salmonella enterica strain AUSMDU00051439 SAMN37985214-rid20014563.guided.065, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154105.1_PDT001962086.1_genomic.fna	Salmonella_enterica	0.521	58.026 KB	28	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVO010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051440 SAMN37985215-rid20014553.denovo.005, whole genome shotgun sequence	7517..7951	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVO010000153.1 TPA_asm: Salmonella enterica strain AUSMDU00051440 SAMN37985215-rid20014553.guided.042, whole genome shotgun sequence	14751..15185	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154155.1_PDT001962085.1_genomic.fna	Salmonella_enterica	0.5205	76.501 KB	22	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVQ010000002.1 TPA_asm: Salmonella enterica strain AUSMDU00037688 SAMN37985216-rid20012803.denovo.002, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVQ010000119.1 TPA_asm: Salmonella enterica strain AUSMDU00037688 SAMN37985216-rid20012803.guided.043, whole genome shotgun sequence	15463..15897	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154175.1_PDT001962087.1_genomic.fna	Salmonella_enterica	0.5206	80.327 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVN010000016.1 TPA_asm: Salmonella enterica strain AUSMDU00051268 SAMN37985026-rid20019313.denovo.016, whole genome shotgun sequence	12874..13308	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVN010000111.1 TPA_asm: Salmonella enterica strain AUSMDU00051268 SAMN37985026-rid20019313.guided.068, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154215.1_PDT001962084.1_genomic.fna	Salmonella_enterica	0.5201	143.209 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVR010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00037645 SAMN37985217-rid20015933.denovo.08, whole genome shotgun sequence	30066..30500	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVR010000073.1 TPA_asm: Salmonella enterica strain AUSMDU00037645 SAMN37985217-rid20015933.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154245.1_PDT001962083.1_genomic.fna	Salmonella_enterica	0.5199	153.394 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVP010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00037667 SAMN37985218-rid20014543.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVP010000058.1 TPA_asm: Salmonella enterica strain AUSMDU00037667 SAMN37985218-rid20014543.guided.28, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154295.1_PDT001962082.1_genomic.fna	Salmonella_enterica	0.52	143.21 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVS010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00037672 SAMN37985219-rid20018293.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVS010000075.1 TPA_asm: Salmonella enterica strain AUSMDU00037672 SAMN37985219-rid20018293.guided.42, whole genome shotgun sequence	1694..2128	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154335.1_PDT001962080.1_genomic.fna	Salmonella_enterica	0.5199	143.413 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVU010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00037668 SAMN37985221-rid20011203.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVU010000071.1 TPA_asm: Salmonella enterica strain AUSMDU00037668 SAMN37985221-rid20011203.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154375.1_PDT001962081.1_genomic.fna	Salmonella_enterica	0.52	145.115 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVT010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00037666 SAMN37985220-rid20014533.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVT010000063.1 TPA_asm: Salmonella enterica strain AUSMDU00037666 SAMN37985220-rid20014533.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154395.1_PDT001962079.1_genomic.fna	Salmonella_enterica	0.5201	102.604 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVV010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051944 SAMN37985005-rid20017143.denovo.07, whole genome shotgun sequence	12879..13313	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVV010000097.1 TPA_asm: Salmonella enterica strain AUSMDU00051944 SAMN37985005-rid20017143.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154415.1_PDT001962078.1_genomic.fna	Salmonella_enterica	0.5201	109.225 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVY010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00049590 SAMN37985006-rid20014523.denovo.004, whole genome shotgun sequence	12905..13339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVY010000101.1 TPA_asm: Salmonella enterica strain AUSMDU00049590 SAMN37985006-rid20014523.guided.039, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154485.1_PDT001962076.1_genomic.fna	Salmonella_enterica	0.5197	144.446 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVW010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00051963 SAMN37985105-rid20014513.denovo.09, whole genome shotgun sequence	30036..30470	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVW010000072.1 TPA_asm: Salmonella enterica strain AUSMDU00051963 SAMN37985105-rid20014513.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154535.1_PDT001962077.1_genomic.fna	Salmonella_enterica	0.5205	71.05 KB	23	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVZ010000023.1 TPA_asm: Salmonella enterica strain AUSMDU00037692 SAMN37985015-rid20019303.denovo.023, whole genome shotgun sequence	12851..13285	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVZ010000120.1 TPA_asm: Salmonella enterica strain AUSMDU00037692 SAMN37985015-rid20019303.guided.068, whole genome shotgun sequence	14643..15077	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154565.1_PDT001962073.1_genomic.fna	Salmonella_enterica	0.5203	96.895 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWB010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00017193 SAMN37985339-rid20014503.denovo.05, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWB010000092.1 TPA_asm: Salmonella enterica strain AUSMDU00017193 SAMN37985339-rid20014503.guided.61, whole genome shotgun sequence	2516..2950	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154585.1_PDT001962075.1_genomic.fna	Salmonella_enterica	0.5206	79.151 KB	25	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVX010000016.1 TPA_asm: Salmonella enterica strain AUSMDU00017294 SAMN37985337-rid20012793.denovo.016, whole genome shotgun sequence	12851..13285	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVX010000121.1 TPA_asm: Salmonella enterica strain AUSMDU00017294 SAMN37985337-rid20012793.guided.065, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154655.1_PDT001962074.1_genomic.fna	Salmonella_enterica	0.5202	97.724 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWA010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00017311 SAMN37985338-rid20015923.denovo.07, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWA010000090.1 TPA_asm: Salmonella enterica strain AUSMDU00017311 SAMN37985338-rid20015923.guided.50, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154675.1_PDT001962072.1_genomic.fna	Salmonella_enterica	0.5205	87.698 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWC010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00017192 SAMN37985340-rid20018283.denovo.004, whole genome shotgun sequence	30066..30500	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWC010000101.1 TPA_asm: Salmonella enterica strain AUSMDU00017192 SAMN37985340-rid20018283.guided.046, whole genome shotgun sequence	7618..8052	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154715.1_PDT001962071.1_genomic.fna	Salmonella_enterica	0.5197	135.417 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWD010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00018568 SAMN37985341-rid20014493.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWD010000074.1 TPA_asm: Salmonella enterica strain AUSMDU00018568 SAMN37985341-rid20014493.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154735.1_PDT001962069.1_genomic.fna	Salmonella_enterica	0.5203	84.262 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWH010000016.1 TPA_asm: Salmonella enterica strain AUSMDU00017328 SAMN37985343-rid20017133.denovo.016, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWH010000104.1 TPA_asm: Salmonella enterica strain AUSMDU00017328 SAMN37985343-rid20017133.guided.038, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154795.1_PDT001962070.1_genomic.fna	Salmonella_enterica	0.5203	128.985 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWE010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017318 SAMN37985342-rid20011193.denovo.006, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWE010000100.1 TPA_asm: Salmonella enterica strain AUSMDU00017318 SAMN37985342-rid20011193.guided.045, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154855.1_PDT001962067.1_genomic.fna	Salmonella_enterica	0.5207	79.215 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWG010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051951 SAMN37985039-rid20019293.denovo.004, whole genome shotgun sequence	12860..13294	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWG010000123.1 TPA_asm: Salmonella enterica strain AUSMDU00051951 SAMN37985039-rid20019293.guided.036, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154875.1_PDT001962068.1_genomic.fna	Salmonella_enterica	0.5205	80.328 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWF010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00018739 SAMN37985344-rid20014483.denovo.005, whole genome shotgun sequence	7533..7967	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWF010000113.1 TPA_asm: Salmonella enterica strain AUSMDU00018739 SAMN37985344-rid20014483.guided.061, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154915.1_PDT001962065.1_genomic.fna	Salmonella_enterica	0.5199	110.344 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWJ010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00017327 SAMN37985346-rid20012783.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWJ010000089.1 TPA_asm: Salmonella enterica strain AUSMDU00017327 SAMN37985346-rid20012783.guided.51, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154935.1_PDT001962066.1_genomic.fna	Salmonella_enterica	0.5203	85.27 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWI010000018.1 TPA_asm: Salmonella enterica strain AUSMDU00017320 SAMN37985345-rid20014473.denovo.019, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWI010000102.1 TPA_asm: Salmonella enterica strain AUSMDU00017320 SAMN37985345-rid20014473.guided.040, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154955.1_PDT001962064.1_genomic.fna	Salmonella_enterica	0.5203	135.417 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWK010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00017325 SAMN37985347-rid20015913.denovo.09, whole genome shotgun sequence	12854..13288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWK010000087.1 TPA_asm: Salmonella enterica strain AUSMDU00017325 SAMN37985347-rid20015913.guided.47, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033154975.1_PDT001962062.1_genomic.fna	Salmonella_enterica	0.5202	113.336 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWM010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017339 SAMN37985349-rid20018273.denovo.06, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWM010000095.1 TPA_asm: Salmonella enterica strain AUSMDU00017339 SAMN37985349-rid20018273.guided.58, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033155035.1_PDT001962063.1_genomic.fna	Salmonella_enterica	0.5199	138.626 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWL010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00017323 SAMN37985348-rid20014463.denovo.08, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWL010000071.1 TPA_asm: Salmonella enterica strain AUSMDU00017323 SAMN37985348-rid20014463.guided.44, whole genome shotgun sequence	15566..16000	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033155115.1_PDT001962061.1_genomic.fna	Salmonella_enterica	0.5208	62.84 KB	24	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWN010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00018556 SAMN37985350-rid20014453.denovo.003, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWN010000131.1 TPA_asm: Salmonella enterica strain AUSMDU00018556 SAMN37985350-rid20014453.guided.049, whole genome shotgun sequence	9267..9701	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033155145.1_PDT001962060.1_genomic.fna	Salmonella_enterica	0.5202	97.724 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWO010000012.1 TPA_asm: Salmonella enterica strain AUSMDU00018565 SAMN37985351-rid20011183.denovo.12, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWO010000091.1 TPA_asm: Salmonella enterica strain AUSMDU00018565 SAMN37985351-rid20011183.guided.39, whole genome shotgun sequence	14131..14565	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033155875.1_PDT001962058.1_genomic.fna	Salmonella_enterica	0.5202	97.181 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWQ010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017341 SAMN37985353-rid20011173.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWQ010000098.1 TPA_asm: Salmonella enterica strain AUSMDU00017341 SAMN37985353-rid20011173.guided.44, whole genome shotgun sequence	10446..10880	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033155895.1_PDT001962055.1_genomic.fna	Salmonella_enterica	0.5198	113.336 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWT010000011.1 TPA_asm: Salmonella enterica strain AUSMDU00018553 SAMN37985355-rid20012773.denovo.11, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWT010000094.1 TPA_asm: Salmonella enterica strain AUSMDU00018553 SAMN37985355-rid20012773.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033155915.1_PDT001962059.1_genomic.fna	Salmonella_enterica	0.5206	79.916 KB	22	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWP010000015.1 TPA_asm: Salmonella enterica strain AUSMDU00017340 SAMN37985352-rid20017123.denovo.015, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWP010000112.1 TPA_asm: Salmonella enterica strain AUSMDU00017340 SAMN37985352-rid20017123.guided.044, whole genome shotgun sequence	14695..15129	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033155955.1_PDT001962056.1_genomic.fna	Salmonella_enterica	0.5205	79.925 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWS010000011.1 TPA_asm: Salmonella enterica strain AUSMDU00051946 SAMN37985040-rid20014443.denovo.011, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWS010000114.1 TPA_asm: Salmonella enterica strain AUSMDU00051946 SAMN37985040-rid20014443.guided.040, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156015.1_PDT001962057.1_genomic.fna	Salmonella_enterica	0.5202	102.001 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWR010000010.1 TPA_asm: Salmonella enterica strain AUSMDU00018572 SAMN37985354-rid20019283.denovo.010, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWR010000103.1 TPA_asm: Salmonella enterica strain AUSMDU00018572 SAMN37985354-rid20019283.guided.047, whole genome shotgun sequence	3162..3596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156075.1_PDT001962053.1_genomic.fna	Salmonella_enterica	0.5206	64.12 KB	25	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWW010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00018555 SAMN37985357-rid20011163.denovo.004, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWW010000131.1 TPA_asm: Salmonella enterica strain AUSMDU00018555 SAMN37985357-rid20011163.guided.057, whole genome shotgun sequence	3162..3596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156095.1_PDT001962054.1_genomic.fna	Salmonella_enterica	0.5201	135.417 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWU010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00018574 SAMN37985356-rid20015903.denovo.08, whole genome shotgun sequence	29908..30342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWU010000074.1 TPA_asm: Salmonella enterica strain AUSMDU00018574 SAMN37985356-rid20015903.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156135.1_PDT001962052.1_genomic.fna	Salmonella_enterica	0.5198	113.336 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWV010000017.1 TPA_asm: Salmonella enterica strain AUSMDU00018569 SAMN37985358-rid20018263.denovo.17, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWV010000086.1 TPA_asm: Salmonella enterica strain AUSMDU00018569 SAMN37985358-rid20018263.guided.47, whole genome shotgun sequence	2611..3045	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156235.1_PDT001962049.1_genomic.fna	Salmonella_enterica	0.5199	96.901 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWZ010000014.1 TPA_asm: Salmonella enterica strain AUSMDU00018562 SAMN37985361-rid20015893.denovo.14, whole genome shotgun sequence	12864..13298	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWZ010000097.1 TPA_asm: Salmonella enterica strain AUSMDU00018562 SAMN37985361-rid20015893.guided.43, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156255.1_PDT001962051.1_genomic.fna	Salmonella_enterica	0.5204	94.876 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWX010000001.1 TPA_asm: Salmonella enterica strain AUSMDU00017338 SAMN37985359-rid20012763.denovo.001, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWX010000113.1 TPA_asm: Salmonella enterica strain AUSMDU00017338 SAMN37985359-rid20012763.guided.040, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156275.1_PDT001962048.1_genomic.fna	Salmonella_enterica	0.52	135.419 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXA010000015.1 TPA_asm: Salmonella enterica strain AUSMDU00018564 SAMN37985362-rid20012743.denovo.15, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXA010000082.1 TPA_asm: Salmonella enterica strain AUSMDU00018564 SAMN37985362-rid20012743.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156295.1_PDT001962050.1_genomic.fna	Salmonella_enterica	0.5203	100.004 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRWY010000015.1 TPA_asm: Salmonella enterica strain AUSMDU00017337 SAMN37985360-rid20012753.denovo.015, whole genome shotgun sequence	7519..7953	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRWY010000108.1 TPA_asm: Salmonella enterica strain AUSMDU00017337 SAMN37985360-rid20012753.guided.056, whole genome shotgun sequence	15586..16020	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156355.1_PDT001962047.1_genomic.fna	Salmonella_enterica	0.5198	121.659 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXB010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00018559 SAMN37985363-rid20011153.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXB010000078.1 TPA_asm: Salmonella enterica strain AUSMDU00018559 SAMN37985363-rid20011153.guided.47, whole genome shotgun sequence	1098..1532	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156395.1_PDT001962046.1_genomic.fna	Salmonella_enterica	0.5203	97.725 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXC010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00018734 SAMN37985364-rid20014433.denovo.06, whole genome shotgun sequence	7517..7951	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXC010000095.1 TPA_asm: Salmonella enterica strain AUSMDU00018734 SAMN37985364-rid20014433.guided.60, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156415.1_PDT001962045.1_genomic.fna	Salmonella_enterica	0.5204	85.27 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXD010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051941 SAMN37985041-rid20011143.denovo.004, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXD010000100.1 TPA_asm: Salmonella enterica strain AUSMDU00051941 SAMN37985041-rid20011143.guided.040, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156475.1_PDT001962040.1_genomic.fna	Salmonella_enterica	0.5198	121.672 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXI010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00051950 SAMN37985050-rid20011123.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXI010000079.1 TPA_asm: Salmonella enterica strain AUSMDU00051950 SAMN37985050-rid20011123.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156535.1_PDT001962044.1_genomic.fna	Salmonella_enterica	0.5201	101.484 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXE010000018.1 TPA_asm: Salmonella enterica strain AUSMDU00018557 SAMN37985365-rid20017113.denovo.018, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXE010000104.1 TPA_asm: Salmonella enterica strain AUSMDU00018557 SAMN37985365-rid20017113.guided.038, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156555.1_PDT001962043.1_genomic.fna	Salmonella_enterica	0.5201	129.318 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXF010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00049599 SAMN37985047-rid20011133.denovo.07, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXF010000081.1 TPA_asm: Salmonella enterica strain AUSMDU00049599 SAMN37985047-rid20011133.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156575.1_PDT001962041.1_genomic.fna	Salmonella_enterica	0.5205	111.95 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXG010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00037690 SAMN37985049-rid20012733.denovo.08, whole genome shotgun sequence	12878..13312	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXG010000098.1 TPA_asm: Salmonella enterica strain AUSMDU00037690 SAMN37985049-rid20012733.guided.47, whole genome shotgun sequence	14016..14450	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156635.1_PDT001962042.1_genomic.fna	Salmonella_enterica	0.52	136.041 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXH010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00049603 SAMN37985048-rid20019273.denovo.07, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXH010000077.1 TPA_asm: Salmonella enterica strain AUSMDU00049603 SAMN37985048-rid20019273.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156675.1_PDT001962039.1_genomic.fna	Salmonella_enterica	0.52	113.336 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXJ010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051949 SAMN37985051-rid20015883.denovo.04, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXJ010000090.1 TPA_asm: Salmonella enterica strain AUSMDU00051949 SAMN37985051-rid20015883.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156715.1_PDT001962038.1_genomic.fna	Salmonella_enterica	0.5206	97.724 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXK010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051948 SAMN37985052-rid20012723.denovo.004, whole genome shotgun sequence	12905..13339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXK010000110.1 TPA_asm: Salmonella enterica strain AUSMDU00051948 SAMN37985052-rid20012723.guided.037, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156735.1_PDT001962037.1_genomic.fna	Salmonella_enterica	0.5207	68.564 KB	23	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXL010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051953 SAMN37985053-rid20011113.denovo.005, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXL010000128.1 TPA_asm: Salmonella enterica strain AUSMDU00051953 SAMN37985053-rid20011113.guided.042, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156755.1_PDT001962035.1_genomic.fna	Salmonella_enterica	0.5198	136.031 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXM010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051066 SAMN37985010-rid20011103.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXM010000081.1 TPA_asm: Salmonella enterica strain AUSMDU00051066 SAMN37985010-rid20011103.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156795.1_PDT001962036.1_genomic.fna	Salmonella_enterica	0.5201	84.257 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXN010000013.1 TPA_asm: Salmonella enterica strain AUSMDU00051957 SAMN37985054-rid20014423.denovo.013, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXN010000105.1 TPA_asm: Salmonella enterica strain AUSMDU00051957 SAMN37985054-rid20014423.guided.044, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156855.1_PDT001962033.1_genomic.fna	Salmonella_enterica	0.5199	143.418 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXP010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051960 SAMN37985056-rid20011093.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXP010000066.1 TPA_asm: Salmonella enterica strain AUSMDU00051960 SAMN37985056-rid20011093.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156915.1_PDT001962034.1_genomic.fna	Salmonella_enterica	0.5199	110.249 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXO010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051955 SAMN37985055-rid20017103.denovo.04, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXO010000092.1 TPA_asm: Salmonella enterica strain AUSMDU00051955 SAMN37985055-rid20017103.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156935.1_PDT001962032.1_genomic.fna	Salmonella_enterica	0.5203	113.336 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXQ010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00051952 SAMN37985057-rid20019263.denovo.09, whole genome shotgun sequence	12885..13319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXQ010000086.1 TPA_asm: Salmonella enterica strain AUSMDU00051952 SAMN37985057-rid20019263.guided.34, whole genome shotgun sequence	15557..15991	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156955.1_PDT001962031.1_genomic.fna	Salmonella_enterica	0.5197	143.418 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXR010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051939 SAMN37985058-rid20012713.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXR010000069.1 TPA_asm: Salmonella enterica strain AUSMDU00051939 SAMN37985058-rid20012713.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033156995.1_PDT001962030.1_genomic.fna	Salmonella_enterica	0.5209	62.84 KB	25	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXS010000010.1 TPA_asm: Salmonella enterica strain AUSMDU00049579 SAMN37985059-rid20019253.denovo.010, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXS010000142.1 TPA_asm: Salmonella enterica strain AUSMDU00049579 SAMN37985059-rid20019253.guided.041, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033157075.1_PDT001962029.1_genomic.fna	Salmonella_enterica	0.5203	87.732 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXT010000013.1 TPA_asm: Salmonella enterica strain AUSMDU00049586 SAMN37985060-rid20015873.denovo.013, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXT010000104.1 TPA_asm: Salmonella enterica strain AUSMDU00049586 SAMN37985060-rid20015873.guided.041, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033157115.1_PDT001962028.1_genomic.fna	Salmonella_enterica	0.5206	96.942 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXV010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00049578 SAMN37985061-rid20012703.denovo.003, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXV010000109.1 TPA_asm: Salmonella enterica strain AUSMDU00049578 SAMN37985061-rid20012703.guided.041, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033157155.1_PDT001962026.1_genomic.fna	Salmonella_enterica	0.5205	85.077 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXW010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00049582 SAMN37985063-rid20014413.denovo.007, whole genome shotgun sequence	12897..13331	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXW010000116.1 TPA_asm: Salmonella enterica strain AUSMDU00049582 SAMN37985063-rid20014413.guided.036, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033157195.1_PDT001962027.1_genomic.fna	Salmonella_enterica	0.5204	97.724 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXU010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00049581 SAMN37985062-rid20018253.denovo.03, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXU010000098.1 TPA_asm: Salmonella enterica strain AUSMDU00049581 SAMN37985062-rid20018253.guided.40, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033157215.1_PDT001962025.1_genomic.fna	Salmonella_enterica	0.52	113.547 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXX010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00049580 SAMN37985064-rid20018243.denovo.04, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXX010000080.1 TPA_asm: Salmonella enterica strain AUSMDU00049580 SAMN37985064-rid20018243.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033157295.1_PDT001962024.1_genomic.fna	Salmonella_enterica	0.52	114.526 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXY010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00049608 SAMN37985011-rid20017093.denovo.06, whole genome shotgun sequence	12897..13331	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXY010000088.1 TPA_asm: Salmonella enterica strain AUSMDU00049608 SAMN37985011-rid20017093.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033157315.1_PDT001962023.1_genomic.fna	Salmonella_enterica	0.5202	110.353 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRXZ010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051062 SAMN37985065-rid20011083.denovo.04, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRXZ010000093.1 TPA_asm: Salmonella enterica strain AUSMDU00051062 SAMN37985065-rid20011083.guided.40, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158335.1_PDT001962020.1_genomic.fna	Salmonella_enterica	0.5201	97.186 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYC010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00049594 SAMN37985068-rid20019233.denovo.04, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYC010000096.1 TPA_asm: Salmonella enterica strain AUSMDU00049594 SAMN37985068-rid20019233.guided.39, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158375.1_PDT001962018.1_genomic.fna	Salmonella_enterica	0.5201	135.548 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYF010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00049585 SAMN37985070-rid20012683.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYF010000089.1 TPA_asm: Salmonella enterica strain AUSMDU00049585 SAMN37985070-rid20012683.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158415.1_PDT001962022.1_genomic.fna	Salmonella_enterica	0.5201	136.035 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYA010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051058 SAMN37985066-rid20019243.denovo.07, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYA010000082.1 TPA_asm: Salmonella enterica strain AUSMDU00051058 SAMN37985066-rid20019243.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158435.1_PDT001962021.1_genomic.fna	Salmonella_enterica	0.5203	85.27 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYB010000014.1 TPA_asm: Salmonella enterica strain AUSMDU00052760 SAMN37985067-rid20012693.denovo.014, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYB010000101.1 TPA_asm: Salmonella enterica strain AUSMDU00052760 SAMN37985067-rid20012693.guided.057, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158455.1_PDT001962019.1_genomic.fna	Salmonella_enterica	0.5196	149.139 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYD010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00049588 SAMN37985069-rid20015863.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYD010000064.1 TPA_asm: Salmonella enterica strain AUSMDU00049588 SAMN37985069-rid20015863.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158535.1_PDT001962016.1_genomic.fna	Salmonella_enterica	0.5206	79.125 KB	21	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYG010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00049587 SAMN37985072-rid20014403.denovo.009, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYG010000121.1 TPA_asm: Salmonella enterica strain AUSMDU00049587 SAMN37985072-rid20014403.guided.072, whole genome shotgun sequence	7412..7846	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158555.1_PDT001962017.1_genomic.fna	Salmonella_enterica	0.5208	77.509 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYE010000012.1 TPA_asm: Salmonella enterica strain AUSMDU00049584 SAMN37985071-rid20018233.denovo.012, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYE010000127.1 TPA_asm: Salmonella enterica strain AUSMDU00049584 SAMN37985071-rid20018233.guided.038, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158635.1_PDT001962015.1_genomic.fna	Salmonella_enterica	0.5201	107.874 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYH010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00049597 SAMN37985073-rid20018223.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYH010000094.1 TPA_asm: Salmonella enterica strain AUSMDU00049597 SAMN37985073-rid20018223.guided.48, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158655.1_PDT001962014.1_genomic.fna	Salmonella_enterica	0.5201	171.862 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYI010000011.1 TPA_asm: Salmonella enterica strain AUSMDU00037691 SAMN37985074-rid20017083.denovo.11, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYI010000061.1 TPA_asm: Salmonella enterica strain AUSMDU00037691 SAMN37985074-rid20017083.guided.44, whole genome shotgun sequence	9837..10271	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158695.1_PDT001962013.1_genomic.fna	Salmonella_enterica	0.5201	114.566 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYJ010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00049609 SAMN37985012-rid20011073.denovo.08, whole genome shotgun sequence	12868..13302	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYJ010000091.1 TPA_asm: Salmonella enterica strain AUSMDU00049609 SAMN37985012-rid20011073.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158735.1_PDT001962012.1_genomic.fna	Salmonella_enterica	0.52	121.062 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYK010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00049601 SAMN37985075-rid20019223.denovo.03, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYK010000089.1 TPA_asm: Salmonella enterica strain AUSMDU00049601 SAMN37985075-rid20019223.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158755.1_PDT001962011.1_genomic.fna	Salmonella_enterica	0.52	106.569 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYL010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00051967 SAMN37985106-rid20014393.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYL010000094.1 TPA_asm: Salmonella enterica strain AUSMDU00051967 SAMN37985106-rid20014393.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158835.1_PDT001962010.1_genomic.fna	Salmonella_enterica	0.521	59.667 KB	26	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYN010000017.1 TPA_asm: Salmonella enterica strain AUSMDU00051968 SAMN37985107-rid20019213.denovo.017, whole genome shotgun sequence	12905..13339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYN010000151.1 TPA_asm: Salmonella enterica strain AUSMDU00051968 SAMN37985107-rid20019213.guided.041, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158875.1_PDT001962009.1_genomic.fna	Salmonella_enterica	0.5203	83.763 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYM010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051966 SAMN37985108-rid20015853.denovo.004, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYM010000109.1 TPA_asm: Salmonella enterica strain AUSMDU00051966 SAMN37985108-rid20015853.guided.040, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158915.1_PDT001962008.1_genomic.fna	Salmonella_enterica	0.5198	137.059 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYO010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051947 SAMN37985109-rid20012673.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYO010000078.1 TPA_asm: Salmonella enterica strain AUSMDU00051947 SAMN37985109-rid20012673.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158935.1_PDT001962007.1_genomic.fna	Salmonella_enterica	0.5208	79.491 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYP010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051942 SAMN37985110-rid20018213.denovo.004, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYP010000116.1 TPA_asm: Salmonella enterica strain AUSMDU00051942 SAMN37985110-rid20018213.guided.056, whole genome shotgun sequence	14212..14646	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033158975.1_PDT001962006.1_genomic.fna	Salmonella_enterica	0.5198	154.992 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA7,dfrA7	1	gyrA_p.S83Y	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYQ010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQRYQ010000051.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.denovo.56, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQRYQ010000051.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.denovo.56, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQRYQ010000069.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQRYQ010000071.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.guided.55, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQRYQ010000071.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.guided.55, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQRYQ010000057.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.denovo.63, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQRYQ010000072.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.guided.62, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQRYQ010000044.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.denovo.48, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQRYQ010000070.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.guided.47, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQRYQ010000044.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.denovo.48, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQRYQ010000051.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.denovo.56, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQRYQ010000070.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.guided.47, whole genome shotgun sequence	7991..8830	Sulfamethoxazole	U12338	sul2	100	816/816	DAQRYQ010000071.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.guided.55, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQRYQ010000044.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.denovo.48, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQRYQ010000070.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.guided.47, whole genome shotgun sequence	6947..7420	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQRYQ010000017.1 TPA_asm: Salmonella enterica strain AUSMDU00051936 SAMN37985111-rid20014383.denovo.17, whole genome shotgun sequence	23493..24367																																																																	
GCA_033158995.1_PDT001962005.1_genomic.fna	Salmonella_enterica	0.5203	105.49 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	8	aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,blaTEM-1B,blaTEM-1B,catA1,catA1,sul1,sul2,sul1,sul2,dfrA7,dfrA7	1	gyrA_p.S83Y	1	IncFIB(pHCM2)	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYR010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.denovo.005, whole genome shotgun sequence	30024..30458	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQRYR010000069.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.denovo.074, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQRYR010000069.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.denovo.074, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	97.47	435/438	DAQRYR010000099.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.guided.059, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	DAQRYR010000101.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.guided.073, whole genome shotgun sequence	3581..4417	Streptomycin	M28829	aph(3'')-Ib	99.88	804/804	DAQRYR010000101.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.guided.073, whole genome shotgun sequence	2778..3581	Streptomycin	AF321551	blaTEM-1B	100	861/861	DAQRYR010000081.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.denovo.087, whole genome shotgun sequence	530..1390	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	DAQRYR010000102.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.guided.085, whole genome shotgun sequence	473..1333	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	catA1	99.85	660/660	DAQRYR010000061.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.denovo.064, whole genome shotgun sequence	8087..8746	Chloramphenicol	V00622	catA1	99.85	660/660	DAQRYR010000100.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.guided.065, whole genome shotgun sequence	264..923	Chloramphenicol	V00622	sul1	100	840/840	DAQRYR010000061.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.denovo.064, whole genome shotgun sequence	180..1019	Sulfamethoxazole	U12338	sul2	100	816/816	DAQRYR010000069.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.denovo.074, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul1	100	840/840	DAQRYR010000100.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.guided.065, whole genome shotgun sequence	7991..8830	Sulfamethoxazole	U12338	sul2	100	816/816	DAQRYR010000101.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.guided.073, whole genome shotgun sequence	1902..2717	Sulfamethoxazole	HQ840942	dfrA7	100	474/474	DAQRYR010000061.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.denovo.064, whole genome shotgun sequence	1590..2063	Trimethoprim	AB161450	dfrA7	100	474/474	DAQRYR010000100.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.guided.065, whole genome shotgun sequence	6947..7420	Trimethoprim	AB161450																																																																																																																																																																																																																																																																																																																																																								gyrA p.S83Y	TCC -> TAC	S -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(pHCM2)	100	875 / 875	DAQRYR010000015.1 TPA_asm: Salmonella enterica strain AUSMDU00051940 SAMN37985112-rid20018203.denovo.015, whole genome shotgun sequence	23493..24367																																																																	
GCA_033159095.1_PDT001962004.1_genomic.fna	Salmonella_enterica	0.5198	121.66 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYS010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051943 SAMN37985113-rid20017073.denovo.07, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYS010000075.1 TPA_asm: Salmonella enterica strain AUSMDU00051943 SAMN37985113-rid20017073.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159115.1_PDT001962002.1_genomic.fna	Salmonella_enterica	0.52	128.987 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYV010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00049593 SAMN37985016-rid20019203.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYV010000089.1 TPA_asm: Salmonella enterica strain AUSMDU00049593 SAMN37985016-rid20019203.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159135.1_PDT001962003.1_genomic.fna	Salmonella_enterica	0.5201	143.418 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYT010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00037642 SAMN37985114-rid20011063.denovo.07, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYT010000071.1 TPA_asm: Salmonella enterica strain AUSMDU00037642 SAMN37985114-rid20011063.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159205.1_PDT001962000.1_genomic.fna	Salmonella_enterica	0.5199	146.725 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYW010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00037657 SAMN37985116-rid20019193.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYW010000064.1 TPA_asm: Salmonella enterica strain AUSMDU00037657 SAMN37985116-rid20019193.guided.31, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159235.1_PDT001961999.1_genomic.fna	Salmonella_enterica	0.52	143.418 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYX010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00037634 SAMN37985117-rid20015843.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYX010000066.1 TPA_asm: Salmonella enterica strain AUSMDU00037634 SAMN37985117-rid20015843.guided.46, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159275.1_PDT001962001.1_genomic.fna	Salmonella_enterica	0.5199	145.781 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYU010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00037658 SAMN37985115-rid20014373.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYU010000066.1 TPA_asm: Salmonella enterica strain AUSMDU00037658 SAMN37985115-rid20014373.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159295.1_PDT001961998.1_genomic.fna	Salmonella_enterica	0.5201	113.336 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYY010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00037633 SAMN37985118-rid20012663.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYY010000084.1 TPA_asm: Salmonella enterica strain AUSMDU00037633 SAMN37985118-rid20012663.guided.38, whole genome shotgun sequence	14161..14595	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159355.1_PDT001961997.1_genomic.fna	Salmonella_enterica	0.5211	55.067 KB	29	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRYZ010000018.1 TPA_asm: Salmonella enterica strain AUSMDU00051451 SAMN37985119-rid20015833.denovo.018, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRYZ010000163.1 TPA_asm: Salmonella enterica strain AUSMDU00051451 SAMN37985119-rid20015833.guided.062, whole genome shotgun sequence	14778..15212	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159395.1_PDT001961996.1_genomic.fna	Salmonella_enterica	0.5199	135.419 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZA010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00051600 SAMN37985120-rid20014363.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZA010000070.1 TPA_asm: Salmonella enterica strain AUSMDU00051600 SAMN37985120-rid20014363.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159435.1_PDT001961995.1_genomic.fna	Salmonella_enterica	0.5198	130.867 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZB010000013.1 TPA_asm: Salmonella enterica strain AUSMDU00051604 SAMN37985121-rid20018193.denovo.13, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZB010000069.1 TPA_asm: Salmonella enterica strain AUSMDU00051604 SAMN37985121-rid20018193.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159455.1_PDT001961992.1_genomic.fna	Salmonella_enterica	0.5211	62.396 KB	25	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZE010000022.1 TPA_asm: Salmonella enterica strain AUSMDU00051427 SAMN37985124-rid20017053.denovo.022, whole genome shotgun sequence	12854..13288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZE010000152.1 TPA_asm: Salmonella enterica strain AUSMDU00051427 SAMN37985124-rid20017053.guided.067, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159535.1_PDT001961991.1_genomic.fna	Salmonella_enterica	0.5197	153.394 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZF010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00051937 SAMN37985017-rid20014353.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZF010000061.1 TPA_asm: Salmonella enterica strain AUSMDU00051937 SAMN37985017-rid20014353.guided.31, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159575.1_PDT001961993.1_genomic.fna	Salmonella_enterica	0.5201	113.336 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZD010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00037637 SAMN37985123-rid20011053.denovo.07, whole genome shotgun sequence	30010..30444	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZD010000078.1 TPA_asm: Salmonella enterica strain AUSMDU00037637 SAMN37985123-rid20011053.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159595.1_PDT001961994.1_genomic.fna	Salmonella_enterica	0.5202	143.418 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZC010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00037673 SAMN37985122-rid20017063.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZC010000068.1 TPA_asm: Salmonella enterica strain AUSMDU00037673 SAMN37985122-rid20017063.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159615.1_PDT001961990.1_genomic.fna	Salmonella_enterica	0.5201	143.215 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZG010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00037656 SAMN37985125-rid20019183.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZG010000069.1 TPA_asm: Salmonella enterica strain AUSMDU00037656 SAMN37985125-rid20019183.guided.40, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159635.1_PDT001961989.1_genomic.fna	Salmonella_enterica	0.5198	136.048 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZH010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00037647 SAMN37985126-rid20015823.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZH010000075.1 TPA_asm: Salmonella enterica strain AUSMDU00037647 SAMN37985126-rid20015823.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159735.1_PDT001961986.1_genomic.fna	Salmonella_enterica	0.52	135.964 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZK010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00037661 SAMN37985129-rid20014343.denovo.08, whole genome shotgun sequence	30034..30468	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZK010000075.1 TPA_asm: Salmonella enterica strain AUSMDU00037661 SAMN37985129-rid20014343.guided.45, whole genome shotgun sequence	22..456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159755.1_PDT001961987.1_genomic.fna	Salmonella_enterica	0.52	129.462 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZJ010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00037653 SAMN37985128-rid20015813.denovo.05, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZJ010000078.1 TPA_asm: Salmonella enterica strain AUSMDU00037653 SAMN37985128-rid20015813.guided.53, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159775.1_PDT001961985.1_genomic.fna	Salmonella_enterica	0.5211	80.33 KB	21	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZL010000027.1 TPA_asm: Salmonella enterica strain AUSMDU00051454 SAMN37985130-rid20018183.denovo.027, whole genome shotgun sequence	12854..13288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZL010000135.1 TPA_asm: Salmonella enterica strain AUSMDU00051454 SAMN37985130-rid20018183.guided.050, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159815.1_PDT001961988.1_genomic.fna	Salmonella_enterica	0.52	154.988 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZI010000010.1 TPA_asm: Salmonella enterica strain AUSMDU00037670 SAMN37985127-rid20012653.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZI010000065.1 TPA_asm: Salmonella enterica strain AUSMDU00037670 SAMN37985127-rid20012653.guided.30, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033159835.1_PDT001961984.1_genomic.fna	Salmonella_enterica	0.5198	136.045 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZM010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00051926 SAMN37985131-rid20017043.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZM010000077.1 TPA_asm: Salmonella enterica strain AUSMDU00051926 SAMN37985131-rid20017043.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033160395.1_PDT001962329.1_genomic.fna	Salmonella_enterica	0.5208	223.58 KB	7	aroC_10,dnaN_19,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	34	4:i:-	7	aac(6')-Iaa,aph(3')-Ia,aph(6)-Id,aph(3'')-Ib,aac(6')-Iaa,aph(6)-Id,aph(3'')-Ib,aph(3')-Ia,blaTEM-1B,blaTEM-1B,sul2,sul2,tet(B),tet(B)	0		3	Col(pHAD28),Col(pHAD28),Col440II,IncY	aroC	100	100	aroC_10	dnaN	100	100	dnaN_19	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	-	Salmonella enterica subspecies enterica (subspecies I)	I 4,[5],12:i:-		O	H1_fliC	H2_fljB	aac(6')-Iaa	100	438/438	ABOLLP010000001.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.denovo.01, whole genome shotgun sequence	581410..581847	Amikacin, Tobramycin	NC_003197	aph(3')-Ia	100	816/816	ABOLLP010000036.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.denovo.40, whole genome shotgun sequence	555..1370	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	aph(6)-Id	100	837/837	ABOLLP010000040.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.denovo.45, whole genome shotgun sequence	8..844	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOLLP010000040.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.denovo.45, whole genome shotgun sequence	844..1647	Streptomycin	AF321551	aac(6')-Iaa	100	438/438	ABOLLP010000050.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.guided.31, whole genome shotgun sequence	15873..16310	Amikacin, Tobramycin	NC_003197	aph(6)-Id	100	837/837	ABOLLP010000054.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.guided.43, whole genome shotgun sequence	3582..4418	Streptomycin	M28829	aph(3'')-Ib	100	804/804	ABOLLP010000054.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.guided.43, whole genome shotgun sequence	2779..3582	Streptomycin	AF321551	aph(3')-Ia	100	816/816	ABOLLP010000055.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.guided.48, whole genome shotgun sequence	762..1577	Unknown Aminoglycoside, Kanamycin, Neomycin, Kanamycin, Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin	EU722351	blaTEM-1B	100	861/861	ABOLLP010000043.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.denovo.50, whole genome shotgun sequence	532..1392	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	blaTEM-1B	100	861/861	ABOLLP010000056.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.guided.49, whole genome shotgun sequence	562..1422	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	AY458016	sul2	100	816/816	ABOLLP010000040.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.denovo.45, whole genome shotgun sequence	1708..2523	Sulfamethoxazole	HQ840942	sul2	100	816/816	ABOLLP010000054.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.guided.43, whole genome shotgun sequence	1903..2718	Sulfamethoxazole	HQ840942	tet(B)	100	1206/1206	ABOLLP010000032.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.denovo.33, whole genome shotgun sequence	7276..8481	Doxycycline, Tetracycline, Minocycline	AF326777	tet(B)	100	1206/1206	ABOLLP010000052.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.guided.35, whole genome shotgun sequence	2520..3725	Doxycycline, Tetracycline, Minocycline	AF326777																																																																																																																																																																																																																																																																																																																																																																																										enterobacteriales	Col(pHAD28)	93.33	120 / 131	ABOLLP010000035.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.denovo.39, whole genome shotgun sequence	1326..1445	enterobacteriales	Col(pHAD28)	92.25	129 / 131	ABOLLP010000042.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.denovo.47, whole genome shotgun sequence	846..974		enterobacteriales	Col440II	97.87	282 / 282	ABOLLP010000042.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.denovo.47, whole genome shotgun sequence	1551..1832		enterobacteriales	IncY	99.74	765 / 765	ABOLLP010000017.1 Salmonella enterica strain PNUSAS396508 SAMN38038910-rid20011603.denovo.17, whole genome shotgun sequence	38912..39676																																		avrA	ABOLLP010000008.1	93865..94734	99.885	870	0						
GCA_033160745.1_PDT001961982.1_genomic.fna	Salmonella_enterica	0.5199	135.826 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZO010000015.1 TPA_asm: Salmonella enterica strain AUSMDU00051597 SAMN37985133-rid20017033.denovo.15, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZO010000074.1 TPA_asm: Salmonella enterica strain AUSMDU00051597 SAMN37985133-rid20017033.guided.50, whole genome shotgun sequence	1958..2392	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033160795.1_PDT001961981.1_genomic.fna	Salmonella_enterica	0.5197	147.177 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZP010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051611 SAMN37985134-rid20014333.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZP010000069.1 TPA_asm: Salmonella enterica strain AUSMDU00051611 SAMN37985134-rid20014333.guided.31, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033160855.1_PDT001961983.1_genomic.fna	Salmonella_enterica	0.5198	136.007 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZN010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051925 SAMN37985132-rid20011043.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZN010000074.1 TPA_asm: Salmonella enterica strain AUSMDU00051925 SAMN37985132-rid20011043.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033160875.1_PDT001961980.1_genomic.fna	Salmonella_enterica	0.5202	100.829 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZQ010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00049583 SAMN37985018-rid20019173.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZQ010000094.1 TPA_asm: Salmonella enterica strain AUSMDU00049583 SAMN37985018-rid20019173.guided.39, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033160895.1_PDT001961979.1_genomic.fna	Salmonella_enterica	0.52	149.139 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZR010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00037640 SAMN37985222-rid20015803.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZR010000065.1 TPA_asm: Salmonella enterica strain AUSMDU00037640 SAMN37985222-rid20015803.guided.41, whole genome shotgun sequence	9854..10288	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033160935.1_PDT001961978.1_genomic.fna	Salmonella_enterica	0.5202	153.394 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZS010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00037662 SAMN37985223-rid20012643.denovo.09, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZS010000059.1 TPA_asm: Salmonella enterica strain AUSMDU00037662 SAMN37985223-rid20012643.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033160995.1_PDT001961977.1_genomic.fna	Salmonella_enterica	0.5202	96.892 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZT010000001.1 TPA_asm: Salmonella enterica strain AUSMDU00037678 SAMN37985224-rid20015793.denovo.001, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZT010000107.1 TPA_asm: Salmonella enterica strain AUSMDU00037678 SAMN37985224-rid20015793.guided.056, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161055.1_PDT001961975.1_genomic.fna	Salmonella_enterica	0.5205	162.057 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZV010000010.1 TPA_asm: Salmonella enterica strain AUSMDU00037669 SAMN37985225-rid20018173.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZV010000062.1 TPA_asm: Salmonella enterica strain AUSMDU00037669 SAMN37985225-rid20018173.guided.42, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161075.1_PDT001961976.1_genomic.fna	Salmonella_enterica	0.5204	76.314 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZU010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00037695 SAMN37985027-rid20012633.denovo.004, whole genome shotgun sequence	12864..13298	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZU010000132.1 TPA_asm: Salmonella enterica strain AUSMDU00037695 SAMN37985027-rid20012633.guided.064, whole genome shotgun sequence	9308..9742	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161095.1_PDT001961974.1_genomic.fna	Salmonella_enterica	0.5207	68.576 KB	24	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZW010000022.1 TPA_asm: Salmonella enterica strain AUSMDU00051453 SAMN37985226-rid20015783.denovo.022, whole genome shotgun sequence	7484..7918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZW010000140.1 TPA_asm: Salmonella enterica strain AUSMDU00051453 SAMN37985226-rid20015783.guided.067, whole genome shotgun sequence	16359..16793	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161115.1_PDT001961972.1_genomic.fna	Salmonella_enterica	0.5197	144.445 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZY010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051607 SAMN37985228-rid20015773.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZY010000067.1 TPA_asm: Salmonella enterica strain AUSMDU00051607 SAMN37985228-rid20015773.guided.31, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161155.1_PDT001961973.1_genomic.fna	Salmonella_enterica	0.5201	153.394 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZX010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00037665 SAMN37985227-rid20012623.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZX010000062.1 TPA_asm: Salmonella enterica strain AUSMDU00037665 SAMN37985227-rid20012623.guided.39, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161175.1_PDT001961971.1_genomic.fna	Salmonella_enterica	0.5206	83.749 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRZZ010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00051430 SAMN37985229-rid20014323.denovo.009, whole genome shotgun sequence	30075..30509	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRZZ010000113.1 TPA_asm: Salmonella enterica strain AUSMDU00051430 SAMN37985229-rid20014323.guided.057, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161195.1_PDT001961970.1_genomic.fna	Salmonella_enterica	0.5198	143.701 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAB010000011.1 TPA_asm: Salmonella enterica strain AUSMDU00051596 SAMN37985230-rid20017023.denovo.11, whole genome shotgun sequence	12905..13339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAB010000074.1 TPA_asm: Salmonella enterica strain AUSMDU00051596 SAMN37985230-rid20017023.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161215.1_PDT001961968.1_genomic.fna	Salmonella_enterica	0.5198	129.466 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAC010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051601 SAMN37985232-rid20011033.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAC010000079.1 TPA_asm: Salmonella enterica strain AUSMDU00051601 SAMN37985232-rid20011033.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161275.1_PDT001961969.1_genomic.fna	Salmonella_enterica	0.5202	113.336 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAA010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051928 SAMN37985231-rid20014313.denovo.05, whole genome shotgun sequence	30042..30476	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAA010000088.1 TPA_asm: Salmonella enterica strain AUSMDU00051928 SAMN37985231-rid20014313.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161355.1_PDT001961967.1_genomic.fna	Salmonella_enterica	0.5197	121.592 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAD010000011.1 TPA_asm: Salmonella enterica strain AUSMDU00051603 SAMN37985233-rid20017013.denovo.11, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAD010000072.1 TPA_asm: Salmonella enterica strain AUSMDU00051603 SAMN37985233-rid20017013.guided.35, whole genome shotgun sequence	14490..14924	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161375.1_PDT001961966.1_genomic.fna	Salmonella_enterica	0.5209	69.759 KB	22	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAE010000012.1 TPA_asm: Salmonella enterica strain AUSMDU00051434 SAMN37985234-rid20012613.denovo.012, whole genome shotgun sequence	12866..13300	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAE010000131.1 TPA_asm: Salmonella enterica strain AUSMDU00051434 SAMN37985234-rid20012613.guided.036, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161395.1_PDT001961965.1_genomic.fna	Salmonella_enterica	0.5203	110.255 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAF010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00051055 SAMN37985028-rid20018163.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAF010000097.1 TPA_asm: Salmonella enterica strain AUSMDU00051055 SAMN37985028-rid20018163.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161435.1_PDT001961964.1_genomic.fna	Salmonella_enterica	0.5206	68.53 KB	25	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAG010000015.1 TPA_asm: Salmonella enterica strain AUSMDU00051442 SAMN37985235-rid20012603.denovo.015, whole genome shotgun sequence	12854..13288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAG010000131.1 TPA_asm: Salmonella enterica strain AUSMDU00051442 SAMN37985235-rid20012603.guided.062, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161465.1_PDT001961963.1_genomic.fna	Salmonella_enterica	0.5209	62.84 KB	24	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAH010000020.1 TPA_asm: Salmonella enterica strain AUSMDU00051452 SAMN37985236-rid20012593.denovo.020, whole genome shotgun sequence	12874..13308	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAH010000134.1 TPA_asm: Salmonella enterica strain AUSMDU00051452 SAMN37985236-rid20012593.guided.057, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161535.1_PDT001961960.1_genomic.fna	Salmonella_enterica	0.52	113.336 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAK010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00051930 SAMN37985239-rid20011023.denovo.08, whole genome shotgun sequence	12864..13298	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAK010000089.1 TPA_asm: Salmonella enterica strain AUSMDU00051930 SAMN37985239-rid20011023.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161575.1_PDT001961962.1_genomic.fna	Salmonella_enterica	0.5199	121.664 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAI010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051431 SAMN37985237-rid20015763.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAI010000080.1 TPA_asm: Salmonella enterica strain AUSMDU00051431 SAMN37985237-rid20015763.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161595.1_PDT001961961.1_genomic.fna	Salmonella_enterica	0.5222	47.142 KB	33	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	-:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	-	d	-	Salmonella enterica subspecies enterica (subspecies I)	I -:d:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAJ010000015.1 TPA_asm: Salmonella enterica strain AUSMDU00051432 SAMN37985238-rid20014303.denovo.015, whole genome shotgun sequence	7490..7924	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAJ010000189.1 TPA_asm: Salmonella enterica strain AUSMDU00051432 SAMN37985238-rid20014303.guided.075, whole genome shotgun sequence	15074..15508	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161635.1_PDT001961959.1_genomic.fna	Salmonella_enterica	0.5214	56.217 KB	29	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAL010000010.1 TPA_asm: Salmonella enterica strain AUSMDU00051464 SAMN37985240-rid20014293.denovo.010, whole genome shotgun sequence	12847..13281	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAL010000160.1 TPA_asm: Salmonella enterica strain AUSMDU00051464 SAMN37985240-rid20014293.guided.066, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161655.1_PDT001961958.1_genomic.fna	Salmonella_enterica	0.5206	64.678 KB	23	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAM010000010.1 TPA_asm: Salmonella enterica strain AUSMDU00051462 SAMN37985241-rid20011013.denovo.010, whole genome shotgun sequence	12887..13321	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAM010000129.1 TPA_asm: Salmonella enterica strain AUSMDU00051462 SAMN37985241-rid20011013.guided.040, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161675.1_PDT001961957.1_genomic.fna	Salmonella_enterica	0.52	135.417 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAN010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00051933 SAMN37985242-rid20017003.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAN010000079.1 TPA_asm: Salmonella enterica strain AUSMDU00051933 SAMN37985242-rid20017003.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161715.1_PDT001961956.1_genomic.fna	Salmonella_enterica	0.5214	53.783 KB	31	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAO010000014.1 TPA_asm: Salmonella enterica strain AUSMDU00051467 SAMN37985243-rid20012583.denovo.014, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAO010000172.1 TPA_asm: Salmonella enterica strain AUSMDU00051467 SAMN37985243-rid20012583.guided.064, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161785.1_PDT001961955.1_genomic.fna	Salmonella_enterica	0.5205	95.003 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAP010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051463 SAMN37985244-rid20019163.denovo.004, whole genome shotgun sequence	12854..13288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAP010000104.1 TPA_asm: Salmonella enterica strain AUSMDU00051463 SAMN37985244-rid20019163.guided.037, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161825.1_PDT001961954.1_genomic.fna	Salmonella_enterica	0.5197	144.445 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAR010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051934 SAMN37985029-rid20012573.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAR010000064.1 TPA_asm: Salmonella enterica strain AUSMDU00051934 SAMN37985029-rid20012573.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161855.1_PDT001961953.1_genomic.fna	Salmonella_enterica	0.5199	114.515 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAQ010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051457 SAMN37985245-rid20012563.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAQ010000084.1 TPA_asm: Salmonella enterica strain AUSMDU00051457 SAMN37985245-rid20012563.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161875.1_PDT001961952.1_genomic.fna	Salmonella_enterica	0.5201	97.724 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAS010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051919 SAMN37985246-rid20015753.denovo.05, whole genome shotgun sequence	12887..13321	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAS010000096.1 TPA_asm: Salmonella enterica strain AUSMDU00051919 SAMN37985246-rid20015753.guided.42, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161895.1_PDT001961951.1_genomic.fna	Salmonella_enterica	0.5201	102.582 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAT010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051455 SAMN37985247-rid20014283.denovo.007, whole genome shotgun sequence	12868..13302	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAT010000098.1 TPA_asm: Salmonella enterica strain AUSMDU00051455 SAMN37985247-rid20014283.guided.036, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033161935.1_PDT001961950.1_genomic.fna	Salmonella_enterica	0.5197	144.238 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAU010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051609 SAMN37985248-rid20016993.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAU010000069.1 TPA_asm: Salmonella enterica strain AUSMDU00051609 SAMN37985248-rid20016993.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033162015.1_PDT001961949.1_genomic.fna	Salmonella_enterica	0.5201	105.488 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAV010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00051598 SAMN37985249-rid20014273.denovo.06, whole genome shotgun sequence	12905..13339	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAV010000088.1 TPA_asm: Salmonella enterica strain AUSMDU00051598 SAMN37985249-rid20014273.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033162055.1_PDT001961947.1_genomic.fna	Salmonella_enterica	0.5207	93.052 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAW010000020.1 TPA_asm: Salmonella enterica strain AUSMDU00017332 SAMN37985308-rid20016983.denovo.020, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAW010000103.1 TPA_asm: Salmonella enterica strain AUSMDU00017332 SAMN37985308-rid20016983.guided.039, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033162095.1_PDT001961945.1_genomic.fna	Salmonella_enterica	0.52	109.191 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAY010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00018566 SAMN37985310-rid20019153.denovo.05, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAY010000087.1 TPA_asm: Salmonella enterica strain AUSMDU00018566 SAMN37985310-rid20019153.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033162105.1_PDT001961948.1_genomic.fna	Salmonella_enterica	0.5215	59.556 KB	25	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAX010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051456 SAMN37985250-rid20011003.denovo.005, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAX010000148.1 TPA_asm: Salmonella enterica strain AUSMDU00051456 SAMN37985250-rid20011003.guided.097, whole genome shotgun sequence	10146..10580	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163075.1_PDT001961384.1_genomic.fna	Salmonella_enterica	0.5218	401.412 KB	4	aroC_9,dnaN_9,hemD_6,hisD_12,purE_9,sucA_12,thrA_2	18	8:d:1,5	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_9	dnaN	100	100	dnaN_9	hemD	100	100	hemD_6	hisD	100	100	hisD_12	purE	100	100	purE_9	sucA	100	100	sucA_12	thrA	100	100	thrA_2	8	d	1,5	Salmonella enterica subspecies enterica (subspecies I)	Manhattan		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOKTZ010000001.1 Salmonella enterica strain PNUSAS396393 SAMN38035575-rid20009503.denovo.01, whole genome shotgun sequence	647826..648263	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOKTZ010000032.1 Salmonella enterica strain PNUSAS396393 SAMN38035575-rid20009503.guided.19, whole genome shotgun sequence	6226..6663	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOKTZ010000002.1	178641..179510	99.425	870	0						
GCA_033163175.1_PDT001962287.1_genomic.fna	Salmonella_enterica	0.5217	273.33 KB	7	aroC_10,dnaN_7,hemD_12,hisD_9,purE_5,sucA_9,thrA_2	19	4:i:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_10	dnaN	100	100	dnaN_7	hemD	100	100	hemD_12	hisD	100	100	hisD_9	purE	100	100	purE_5	sucA	100	100	sucA_9	thrA	100	100	thrA_2	4	i	1,2	Salmonella enterica subspecies enterica (subspecies I)	Typhimurium		O	H1_fliC	H2_fljB	aac(6')-Iaa	99.77	438/438	ABOLMV010000002.1 Salmonella enterica strain 23WA10GT02-S1 SAMN38037539-rid20011543.denovo.02, whole genome shotgun sequence	392646..393083	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	99.77	438/438	ABOLMV010000048.1 Salmonella enterica strain 23WA10GT02-S1 SAMN38037539-rid20011543.guided.31, whole genome shotgun sequence	19582..20019	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncFIB(S)	100	643 / 643	ABOLMV010000021.1 Salmonella enterica strain 23WA10GT02-S1 SAMN38037539-rid20011543.denovo.21, whole genome shotgun sequence	44712..45354	enterobacteriales	IncFII(S)	100	262 / 262	ABOLMV010000021.1 Salmonella enterica strain 23WA10GT02-S1 SAMN38037539-rid20011543.denovo.21, whole genome shotgun sequence	29366..29627																																																avrA	ABOLMV010000004.1	175018..175886	100	869	0						
GCA_033163235.1_PDT001962119.1_genomic.fna	Salmonella_enterica	0.52	88.986 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUH010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051466 SAMN37985157-rid20017213.denovo.005, whole genome shotgun sequence	12876..13310	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUH010000106.1 TPA_asm: Salmonella enterica strain AUSMDU00051466 SAMN37985157-rid20017213.guided.052, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163295.1_PDT001962115.1_genomic.fna	Salmonella_enterica	0.52	97.208 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUN010000020.1 TPA_asm: Salmonella enterica strain AUSMDU00037682 SAMN37985161-rid20011253.denovo.21, whole genome shotgun sequence	12866..13300	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUN010000096.1 TPA_asm: Salmonella enterica strain AUSMDU00037682 SAMN37985161-rid20011253.guided.54, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163315.1_PDT001962117.1_genomic.fna	Salmonella_enterica	0.5199	171.913 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUJ010000011.1 TPA_asm: Salmonella enterica strain AUSMDU00037674 SAMN37985159-rid20018313.denovo.11, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUJ010000059.1 TPA_asm: Salmonella enterica strain AUSMDU00037674 SAMN37985159-rid20018313.guided.28, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163375.1_PDT001962101.1_genomic.fna	Salmonella_enterica	0.5203	153.394 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRUZ010000010.1 TPA_asm: Salmonella enterica strain AUSMDU00037650 SAMN37985203-rid20017173.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRUZ010000062.1 TPA_asm: Salmonella enterica strain AUSMDU00037650 SAMN37985203-rid20017173.guided.42, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163385.1_PDT001962094.1_genomic.fna	Salmonella_enterica	0.5199	109.225 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQRVG010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051458 SAMN37985208-rid20015943.denovo.07, whole genome shotgun sequence	12866..13300	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQRVG010000098.1 TPA_asm: Salmonella enterica strain AUSMDU00051458 SAMN37985208-rid20015943.guided.44, whole genome shotgun sequence	11565..11999	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163455.1_PDT001961944.1_genomic.fna	Salmonella_enterica	0.5203	101.95 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBA010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00018551 SAMN37985311-rid20012543.denovo.004, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBA010000101.1 TPA_asm: Salmonella enterica strain AUSMDU00018551 SAMN37985311-rid20012543.guided.063, whole genome shotgun sequence	3162..3596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163465.1_PDT001961946.1_genomic.fna	Salmonella_enterica	0.5208	62.549 KB	26	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSAZ010000019.1 TPA_asm: Salmonella enterica strain AUSMDU00018744 SAMN37985309-rid20012553.denovo.019, whole genome shotgun sequence	12874..13308	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSAZ010000138.1 TPA_asm: Salmonella enterica strain AUSMDU00018744 SAMN37985309-rid20012553.guided.071, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163515.1_PDT001961943.1_genomic.fna	Salmonella_enterica	0.5203	84.448 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBB010000019.1 TPA_asm: Salmonella enterica strain AUSMDU00018558 SAMN37985312-rid20012533.denovo.019, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBB010000110.1 TPA_asm: Salmonella enterica strain AUSMDU00018558 SAMN37985312-rid20012533.guided.038, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163555.1_PDT001961942.1_genomic.fna	Salmonella_enterica	0.5202	113.336 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBC010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017330 SAMN37985313-rid20015743.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBC010000089.1 TPA_asm: Salmonella enterica strain AUSMDU00017330 SAMN37985313-rid20015743.guided.52, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163655.1_PDT001961940.1_genomic.fna	Salmonella_enterica	0.5206	100.505 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBF010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051167 SAMN37985036-rid20018153.denovo.007, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBF010000101.1 TPA_asm: Salmonella enterica strain AUSMDU00051167 SAMN37985036-rid20018153.guided.054, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163675.1_PDT001961941.1_genomic.fna	Salmonella_enterica	0.5202	97.231 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBD010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017166 SAMN37985314-rid20014263.denovo.06, whole genome shotgun sequence	12854..13288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBD010000099.1 TPA_asm: Salmonella enterica strain AUSMDU00017166 SAMN37985314-rid20014263.guided.54, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163695.1_PDT001961939.1_genomic.fna	Salmonella_enterica	0.5199	147.177 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBE010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00016821 SAMN37985315-rid20014253.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBE010000065.1 TPA_asm: Salmonella enterica strain AUSMDU00016821 SAMN37985315-rid20014253.guided.44, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163735.1_PDT001961938.1_genomic.fna	Salmonella_enterica	0.5201	125.154 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBI010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00016830 SAMN37985316-rid20010993.denovo.04, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBI010000084.1 TPA_asm: Salmonella enterica strain AUSMDU00016830 SAMN37985316-rid20010993.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163755.1_PDT001961937.1_genomic.fna	Salmonella_enterica	0.5199	125.225 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBG010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00016848 SAMN37985317-rid20016973.denovo.05, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBG010000081.1 TPA_asm: Salmonella enterica strain AUSMDU00016848 SAMN37985317-rid20016973.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163815.1_PDT001961936.1_genomic.fna	Salmonella_enterica	0.5203	84.319 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBH010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00017176 SAMN37985318-rid20010983.denovo.004, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBH010000103.1 TPA_asm: Salmonella enterica strain AUSMDU00017176 SAMN37985318-rid20010983.guided.040, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163875.1_PDT001961934.1_genomic.fna	Salmonella_enterica	0.5211	71.328 KB	22	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBK010000014.1 TPA_asm: Salmonella enterica strain AUSMDU00017170 SAMN37985320-rid20014243.denovo.014, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBK010000123.1 TPA_asm: Salmonella enterica strain AUSMDU00017170 SAMN37985320-rid20014243.guided.053, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163895.1_PDT001961935.1_genomic.fna	Salmonella_enterica	0.5202	80.829 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBJ010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00018743 SAMN37985319-rid20019143.denovo.05, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBJ010000099.1 TPA_asm: Salmonella enterica strain AUSMDU00018743 SAMN37985319-rid20019143.guided.54, whole genome shotgun sequence	2373..2807	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163915.1_PDT001961933.1_genomic.fna	Salmonella_enterica	0.5203	82.752 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBL010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00017304 SAMN37985321-rid20012523.denovo.004, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBL010000107.1 TPA_asm: Salmonella enterica strain AUSMDU00017304 SAMN37985321-rid20012523.guided.054, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163955.1_PDT001961931.1_genomic.fna	Salmonella_enterica	0.5201	113.336 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBN010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00017189 SAMN37985323-rid20012513.denovo.07, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBN010000088.1 TPA_asm: Salmonella enterica strain AUSMDU00017189 SAMN37985323-rid20012513.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033163995.1_PDT001961932.1_genomic.fna	Salmonella_enterica	0.5202	135.231 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBM010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00016843 SAMN37985322-rid20015733.denovo.05, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBM010000077.1 TPA_asm: Salmonella enterica strain AUSMDU00016843 SAMN37985322-rid20015733.guided.34, whole genome shotgun sequence	15818..16252	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164055.1_PDT001961930.1_genomic.fna	Salmonella_enterica	0.5198	129.017 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBQ010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017183 SAMN37985324-rid20018143.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBQ010000081.1 TPA_asm: Salmonella enterica strain AUSMDU00017183 SAMN37985324-rid20018143.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164095.1_PDT001961929.1_genomic.fna	Salmonella_enterica	0.5198	97.941 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		2	IncN,IncN3	aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBO010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00049614 SAMN37985037-rid20014233.denovo.006, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBO010000110.1 TPA_asm: Salmonella enterica strain AUSMDU00049614 SAMN37985037-rid20014233.guided.037, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																														enterobacteriales	IncN	99.61	514 / 514	DAQSBO010000074.1 TPA_asm: Salmonella enterica strain AUSMDU00049614 SAMN37985037-rid20014233.denovo.077, whole genome shotgun sequence	1811..2324	enterobacteriales	IncN3	99.79	477 / 477	DAQSBO010000043.1 TPA_asm: Salmonella enterica strain AUSMDU00049614 SAMN37985037-rid20014233.denovo.046, whole genome shotgun sequence	418..894																																																											
GCA_033164115.1_PDT001961928.1_genomic.fna	Salmonella_enterica	0.5205	74.081 KB	23	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBP010000010.1 TPA_asm: Salmonella enterica strain AUSMDU00017293 SAMN37985325-rid20010973.denovo.010, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBP010000130.1 TPA_asm: Salmonella enterica strain AUSMDU00017293 SAMN37985325-rid20010973.guided.042, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164175.1_PDT001961927.1_genomic.fna	Salmonella_enterica	0.52	143.418 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBR010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00016829 SAMN37985326-rid20016963.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBR010000070.1 TPA_asm: Salmonella enterica strain AUSMDU00016829 SAMN37985326-rid20016963.guided.45, whole genome shotgun sequence	217..651	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164195.1_PDT001961926.1_genomic.fna	Salmonella_enterica	0.5201	137.043 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBS010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00016846 SAMN37985327-rid20010963.denovo.07, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBS010000072.1 TPA_asm: Salmonella enterica strain AUSMDU00016846 SAMN37985327-rid20010963.guided.31, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164275.1_PDT001961925.1_genomic.fna	Salmonella_enterica	0.5197	136.041 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBT010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017187 SAMN37985328-rid20019133.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBT010000078.1 TPA_asm: Salmonella enterica strain AUSMDU00017187 SAMN37985328-rid20019133.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164295.1_PDT001961923.1_genomic.fna	Salmonella_enterica	0.5199	121.584 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBV010000018.1 TPA_asm: Salmonella enterica strain AUSMDU00018552 SAMN37985330-rid20012503.denovo.18, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBV010000083.1 TPA_asm: Salmonella enterica strain AUSMDU00018552 SAMN37985330-rid20012503.guided.36, whole genome shotgun sequence	15484..15918	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164315.1_PDT001961924.1_genomic.fna	Salmonella_enterica	0.5202	121.988 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBU010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00017171 SAMN37985329-rid20014223.denovo.07, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBU010000084.1 TPA_asm: Salmonella enterica strain AUSMDU00017171 SAMN37985329-rid20014223.guided.50, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164415.1_PDT001961922.1_genomic.fna	Salmonella_enterica	0.5201	147.177 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBY010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00016841 SAMN37985331-rid20015723.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBY010000064.1 TPA_asm: Salmonella enterica strain AUSMDU00016841 SAMN37985331-rid20015723.guided.38, whole genome shotgun sequence	10275..10709	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164435.1_PDT001961921.1_genomic.fna	Salmonella_enterica	0.52	128.941 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBW010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00016838 SAMN37985332-rid20012493.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBW010000077.1 TPA_asm: Salmonella enterica strain AUSMDU00016838 SAMN37985332-rid20012493.guided.43, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164455.1_PDT001961920.1_genomic.fna	Salmonella_enterica	0.521	59.358 KB	29	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBX010000019.1 TPA_asm: Salmonella enterica strain AUSMDU00017310 SAMN37985333-rid20018133.denovo.019, whole genome shotgun sequence	24167..24601	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBX010000162.1 TPA_asm: Salmonella enterica strain AUSMDU00017310 SAMN37985333-rid20018133.guided.039, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164535.1_PDT001961919.1_genomic.fna	Salmonella_enterica	0.5201	110.476 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSBZ010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017194 SAMN37985334-rid20014213.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSBZ010000085.1 TPA_asm: Salmonella enterica strain AUSMDU00017194 SAMN37985334-rid20014213.guided.44, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164555.1_PDT001961917.1_genomic.fna	Salmonella_enterica	0.5199	110.501 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCB010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00016847 SAMN37985335-rid20016953.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCB010000085.1 TPA_asm: Salmonella enterica strain AUSMDU00016847 SAMN37985335-rid20016953.guided.45, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164575.1_PDT001961918.1_genomic.fna	Salmonella_enterica	0.5197	153.394 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCA010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00051935 SAMN37985038-rid20010953.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCA010000063.1 TPA_asm: Salmonella enterica strain AUSMDU00051935 SAMN37985038-rid20010953.guided.31, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164635.1_PDT001961915.1_genomic.fna	Salmonella_enterica	0.5202	129.627 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCD010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00049610 SAMN37985021-rid20019123.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCD010000087.1 TPA_asm: Salmonella enterica strain AUSMDU00049610 SAMN37985021-rid20019123.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164655.1_PDT001961916.1_genomic.fna	Salmonella_enterica	0.52	105.353 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCC010000023.1 TPA_asm: Salmonella enterica strain AUSMDU00016844 SAMN37985336-rid20010943.denovo.23, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCC010000082.1 TPA_asm: Salmonella enterica strain AUSMDU00016844 SAMN37985336-rid20010943.guided.47, whole genome shotgun sequence	1793..2227	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164735.1_PDT001961912.1_genomic.fna	Salmonella_enterica	0.5205	70.957 KB	22	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCG010000059.1 TPA_asm: Salmonella enterica strain AUSMDU00051448 SAMN37985167-rid20015713.denovo.062, whole genome shotgun sequence	12887..13321	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCG010000127.1 TPA_asm: Salmonella enterica strain AUSMDU00051448 SAMN37985167-rid20015713.guided.039, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164775.1_PDT001961914.1_genomic.fna	Salmonella_enterica	0.521	84.255 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCF010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00051438 SAMN37985165-rid20014203.denovo.003, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCF010000123.1 TPA_asm: Salmonella enterica strain AUSMDU00051438 SAMN37985165-rid20014203.guided.037, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164795.1_PDT001961913.1_genomic.fna	Salmonella_enterica	0.5201	109.244 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCE010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051425 SAMN37985166-rid20012483.denovo.05, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCE010000094.1 TPA_asm: Salmonella enterica strain AUSMDU00051425 SAMN37985166-rid20012483.guided.38, whole genome shotgun sequence	14166..14600	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164835.1_PDT001961911.1_genomic.fna	Salmonella_enterica	0.5202	81.871 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCH010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051920 SAMN37985168-rid20012473.denovo.004, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCH010000104.1 TPA_asm: Salmonella enterica strain AUSMDU00051920 SAMN37985168-rid20012473.guided.039, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164855.1_PDT001961910.1_genomic.fna	Salmonella_enterica	0.52	137.219 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCJ010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00037659 SAMN37985169-rid20018123.denovo.07, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCJ010000072.1 TPA_asm: Salmonella enterica strain AUSMDU00037659 SAMN37985169-rid20018123.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164875.1_PDT001961909.1_genomic.fna	Salmonella_enterica	0.5198	147.305 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCI010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00037677 SAMN37985170-rid20014193.denovo.09, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCI010000060.1 TPA_asm: Salmonella enterica strain AUSMDU00037677 SAMN37985170-rid20014193.guided.36, whole genome shotgun sequence	7577..8011	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164895.1_PDT001961895.1_genomic.fna	Salmonella_enterica	0.5203	84.412 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCX010000019.1 TPA_asm: Salmonella enterica strain AUSMDU00051441 SAMN37985183-rid20016933.denovo.019, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCX010000110.1 TPA_asm: Salmonella enterica strain AUSMDU00051441 SAMN37985183-rid20016933.guided.055, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033164935.1_PDT001961907.1_genomic.fna	Salmonella_enterica	0.5206	79.169 KB	21	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCL010000001.1 TPA_asm: Salmonella enterica strain AUSMDU00037698 SAMN37985172-rid20016943.denovo.001, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCL010000117.1 TPA_asm: Salmonella enterica strain AUSMDU00037698 SAMN37985172-rid20016943.guided.045, whole genome shotgun sequence	12649..13083	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165035.1_PDT001961905.1_genomic.fna	Salmonella_enterica	0.5201	149.139 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCM010000010.1 TPA_asm: Salmonella enterica strain AUSMDU00037644 SAMN37985174-rid20019113.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCM010000073.1 TPA_asm: Salmonella enterica strain AUSMDU00037644 SAMN37985174-rid20019113.guided.41, whole genome shotgun sequence	22..456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165055.1_PDT001961908.1_genomic.fna	Salmonella_enterica	0.5198	128.926 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCK010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00037699 SAMN37985171-rid20018113.denovo.09, whole genome shotgun sequence	12851..13285	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCK010000092.1 TPA_asm: Salmonella enterica strain AUSMDU00037699 SAMN37985171-rid20018113.guided.46, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165075.1_PDT001961906.1_genomic.fna	Salmonella_enterica	0.5204	87.867 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCN010000026.1 TPA_asm: Salmonella enterica strain AUSMDU00037687 SAMN37985173-rid20010933.denovo.026, whole genome shotgun sequence	12891..13325	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCN010000104.1 TPA_asm: Salmonella enterica strain AUSMDU00037687 SAMN37985173-rid20010933.guided.044, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165095.1_PDT001961904.1_genomic.fna	Salmonella_enterica	0.5201	101.537 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCO010000018.1 TPA_asm: Salmonella enterica strain AUSMDU00049611 SAMN37985022-rid20014183.denovo.018, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCO010000104.1 TPA_asm: Salmonella enterica strain AUSMDU00049611 SAMN37985022-rid20014183.guided.040, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165115.1_PDT001961902.1_genomic.fna	Salmonella_enterica	0.5202	153.394 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCQ010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00037636 SAMN37985176-rid20015703.denovo.09, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCQ010000062.1 TPA_asm: Salmonella enterica strain AUSMDU00037636 SAMN37985176-rid20015703.guided.47, whole genome shotgun sequence	3433..3867	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165135.1_PDT001961901.1_genomic.fna	Salmonella_enterica	0.5197	147.177 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCR010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00051424 SAMN37985177-rid20012463.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCR010000066.1 TPA_asm: Salmonella enterica strain AUSMDU00051424 SAMN37985177-rid20012463.guided.40, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165155.1_PDT001961900.1_genomic.fna	Salmonella_enterica	0.5204	82.738 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCS010000013.1 TPA_asm: Salmonella enterica strain AUSMDU00051436 SAMN37985178-rid20018103.denovo.013, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCS010000114.1 TPA_asm: Salmonella enterica strain AUSMDU00051436 SAMN37985178-rid20018103.guided.039, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165175.1_PDT001961903.1_genomic.fna	Salmonella_enterica	0.5201	135.822 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCP010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00037651 SAMN37985175-rid20019103.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCP010000078.1 TPA_asm: Salmonella enterica strain AUSMDU00037651 SAMN37985175-rid20019103.guided.51, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165195.1_PDT001961899.1_genomic.fna	Salmonella_enterica	0.5207	71.24 KB	24	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCT010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00051444 SAMN37985179-rid20012453.denovo.008, whole genome shotgun sequence	7533..7967	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCT010000132.1 TPA_asm: Salmonella enterica strain AUSMDU00051444 SAMN37985179-rid20012453.guided.042, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165215.1_PDT001961898.1_genomic.fna	Salmonella_enterica	0.5214	63.077 KB	23	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	-:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	-	d	-	Salmonella enterica subspecies enterica (subspecies I)	I -:d:-	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCU010000023.1 TPA_asm: Salmonella enterica strain AUSMDU00051437 SAMN37985180-rid20018093.denovo.023, whole genome shotgun sequence	7528..7962	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCU010000150.1 TPA_asm: Salmonella enterica strain AUSMDU00051437 SAMN37985180-rid20018093.guided.068, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165235.1_PDT001961897.1_genomic.fna	Salmonella_enterica	0.5218	59.197 KB	29	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCV010000024.1 TPA_asm: Salmonella enterica strain AUSMDU00051435 SAMN37985181-rid20015693.denovo.024, whole genome shotgun sequence	7527..7961	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCV010000176.1 TPA_asm: Salmonella enterica strain AUSMDU00051435 SAMN37985181-rid20015693.guided.070, whole genome shotgun sequence	14180..14614	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165255.1_PDT001961896.1_genomic.fna	Salmonella_enterica	0.5209	53.317 KB	29	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCW010000011.1 TPA_asm: Salmonella enterica strain AUSMDU00051443 SAMN37985182-rid20010923.denovo.011, whole genome shotgun sequence	12874..13308	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCW010000176.1 TPA_asm: Salmonella enterica strain AUSMDU00051443 SAMN37985182-rid20010923.guided.058, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165275.1_PDT001961894.1_genomic.fna	Salmonella_enterica	0.5205	82.772 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCY010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051446 SAMN37985184-rid20014173.denovo.004, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCY010000105.1 TPA_asm: Salmonella enterica strain AUSMDU00051446 SAMN37985184-rid20014173.guided.040, whole genome shotgun sequence	15513..15947	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165295.1_PDT001961893.1_genomic.fna	Salmonella_enterica	0.5203	85.27 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSCZ010000015.1 TPA_asm: Salmonella enterica strain AUSMDU00049613 SAMN37985023-rid20010913.denovo.15, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSCZ010000097.1 TPA_asm: Salmonella enterica strain AUSMDU00049613 SAMN37985023-rid20010913.guided.40, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165315.1_PDT001961891.1_genomic.fna	Salmonella_enterica	0.521	67.379 KB	22	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDA010000025.1 TPA_asm: Salmonella enterica strain AUSMDU00051450 SAMN37985186-rid20010903.denovo.025, whole genome shotgun sequence	7515..7949	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDA010000130.1 TPA_asm: Salmonella enterica strain AUSMDU00051450 SAMN37985186-rid20010903.guided.063, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165335.1_PDT001961892.1_genomic.fna	Salmonella_enterica	0.5208	80.901 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDB010000015.1 TPA_asm: Salmonella enterica strain AUSMDU00051876 SAMN37985185-rid20016923.denovo.015, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDB010000107.1 TPA_asm: Salmonella enterica strain AUSMDU00051876 SAMN37985185-rid20016923.guided.082, whole genome shotgun sequence	3181..3615	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165355.1_PDT001961889.1_genomic.fna	Salmonella_enterica	0.5207	63.017 KB	23	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDE010000023.1 TPA_asm: Salmonella enterica strain AUSMDU00051470 SAMN37985188-rid20012443.denovo.023, whole genome shotgun sequence	7484..7918	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDE010000134.1 TPA_asm: Salmonella enterica strain AUSMDU00051470 SAMN37985188-rid20012443.guided.037, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165375.1_PDT001961890.1_genomic.fna	Salmonella_enterica	0.5202	136.073 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDC010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00051605 SAMN37985187-rid20018083.denovo.08, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDC010000071.1 TPA_asm: Salmonella enterica strain AUSMDU00051605 SAMN37985187-rid20018083.guided.40, whole genome shotgun sequence	3162..3596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165395.1_PDT001961888.1_genomic.fna	Salmonella_enterica	0.5204	87.771 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDD010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00051469 SAMN37985189-rid20018073.denovo.003, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDD010000110.1 TPA_asm: Salmonella enterica strain AUSMDU00051469 SAMN37985189-rid20018073.guided.036, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165415.1_PDT001961887.1_genomic.fna	Salmonella_enterica	0.5205	80.685 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDF010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051426 SAMN37985190-rid20015683.denovo.005, whole genome shotgun sequence	12877..13311	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDF010000110.1 TPA_asm: Salmonella enterica strain AUSMDU00051426 SAMN37985190-rid20015683.guided.064, whole genome shotgun sequence	7453..7887	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165435.1_PDT001961886.1_genomic.fna	Salmonella_enterica	0.5205	80.549 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDH010000018.1 TPA_asm: Salmonella enterica strain AUSMDU00051447 SAMN37985191-rid20012433.denovo.018, whole genome shotgun sequence	12889..13323	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDH010000123.1 TPA_asm: Salmonella enterica strain AUSMDU00051447 SAMN37985191-rid20012433.guided.055, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165455.1_PDT001961885.1_genomic.fna	Salmonella_enterica	0.5198	173.548 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDG010000012.1 TPA_asm: Salmonella enterica strain AUSMDU00037648 SAMN37985192-rid20010893.denovo.12, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDG010000065.1 TPA_asm: Salmonella enterica strain AUSMDU00037648 SAMN37985192-rid20010893.guided.42, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165475.1_PDT001961884.1_genomic.fna	Salmonella_enterica	0.5197	154.996 KB	10	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDI010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00037631 SAMN37985193-rid20014163.denovo.09, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDI010000061.1 TPA_asm: Salmonella enterica strain AUSMDU00037631 SAMN37985193-rid20014163.guided.28, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165495.1_PDT001961883.1_genomic.fna	Salmonella_enterica	0.5211	62.84 KB	26	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDK010000019.1 TPA_asm: Salmonella enterica strain AUSMDU00051472 SAMN37985251-rid20016913.denovo.019, whole genome shotgun sequence	7547..7981	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDK010000142.1 TPA_asm: Salmonella enterica strain AUSMDU00051472 SAMN37985251-rid20016913.guided.041, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165515.1_PDT001961881.1_genomic.fna	Salmonella_enterica	0.5202	75.698 KB	23	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDM010000002.1 TPA_asm: Salmonella enterica strain AUSMDU00051465 SAMN37985253-rid20010883.denovo.002, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDM010000127.1 TPA_asm: Salmonella enterica strain AUSMDU00051465 SAMN37985253-rid20010883.guided.059, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165535.1_PDT001961882.1_genomic.fna	Salmonella_enterica	0.5196	143.152 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDJ010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00051610 SAMN37985252-rid20016903.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDJ010000070.1 TPA_asm: Salmonella enterica strain AUSMDU00051610 SAMN37985252-rid20016903.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165555.1_PDT001961880.1_genomic.fna	Salmonella_enterica	0.5206	67.518 KB	23	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDL010000022.1 TPA_asm: Salmonella enterica strain AUSMDU00051460 SAMN37985254-rid20019093.denovo.022, whole genome shotgun sequence	12860..13294	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDL010000143.1 TPA_asm: Salmonella enterica strain AUSMDU00051460 SAMN37985254-rid20019093.guided.056, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165575.1_PDT001961879.1_genomic.fna	Salmonella_enterica	0.5203	85.27 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDN010000014.1 TPA_asm: Salmonella enterica strain AUSMDU00049592 SAMN37985030-rid20012423.denovo.014, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDN010000108.1 TPA_asm: Salmonella enterica strain AUSMDU00049592 SAMN37985030-rid20012423.guided.039, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165595.1_PDT001961878.1_genomic.fna	Salmonella_enterica	0.5197	144.238 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDO010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00051922 SAMN37985255-rid20019083.denovo.08, whole genome shotgun sequence	30078..30512	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDO010000066.1 TPA_asm: Salmonella enterica strain AUSMDU00051922 SAMN37985255-rid20019083.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165615.1_PDT001961877.1_genomic.fna	Salmonella_enterica	0.5198	153.394 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDP010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00051608 SAMN37985256-rid20015673.denovo.09, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDP010000063.1 TPA_asm: Salmonella enterica strain AUSMDU00051608 SAMN37985256-rid20015673.guided.41, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165635.1_PDT001961876.1_genomic.fna	Salmonella_enterica	0.5205	76.889 KB	21	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDQ010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051473 SAMN37985257-rid20012413.denovo.004, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDQ010000115.1 TPA_asm: Salmonella enterica strain AUSMDU00051473 SAMN37985257-rid20012413.guided.041, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165655.1_PDT001961875.1_genomic.fna	Salmonella_enterica	0.5204	97.724 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDS010000016.1 TPA_asm: Salmonella enterica strain AUSMDU00017306 SAMN37985258-rid20015663.denovo.016, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDS010000114.1 TPA_asm: Salmonella enterica strain AUSMDU00017306 SAMN37985258-rid20015663.guided.047, whole genome shotgun sequence	3313..3747	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165675.1_PDT001961874.1_genomic.fna	Salmonella_enterica	0.5202	78.877 KB	19	aroC_1,dnaN_1,hemD_1*,hisD_1,purE_1,sucA_1,thrA_5	1*	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	99.7685185185185	100	hemD_1*	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDR010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00018583 SAMN37985259-rid20014153.denovo.004, whole genome shotgun sequence	12856..13290	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDR010000108.1 TPA_asm: Salmonella enterica strain AUSMDU00018583 SAMN37985259-rid20014153.guided.067, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165695.1_PDT001961873.1_genomic.fna	Salmonella_enterica	0.5204	90.408 KB	17	aroC_1,dnaN_1,hemD_1*,hisD_1,purE_1,sucA_1,thrA_5	1*	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	99.7685185185185	100	hemD_1*	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDT010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00018582 SAMN37985260-rid20018063.denovo.006, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDT010000109.1 TPA_asm: Salmonella enterica strain AUSMDU00018582 SAMN37985260-rid20018063.guided.074, whole genome shotgun sequence	3162..3596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165715.1_PDT001961872.1_genomic.fna	Salmonella_enterica	0.5201	110.57 KB	15	aroC_1,dnaN_1,hemD_1*,hisD_1,purE_1,sucA_1,thrA_5	1*	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	99.7685185185185	100	hemD_1*	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDU010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00017712 SAMN37985261-rid20016893.denovo.08, whole genome shotgun sequence	12895..13329	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDU010000084.1 TPA_asm: Salmonella enterica strain AUSMDU00017712 SAMN37985261-rid20016893.guided.55, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165735.1_PDT001961871.1_genomic.fna	Salmonella_enterica	0.5202	143.418 KB	13	aroC_1,dnaN_1,hemD_1*,hisD_1,purE_1,sucA_1,thrA_5	1*	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	99.7685185185185	100	hemD_1*	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDV010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00018581 SAMN37985262-rid20010873.denovo.08, whole genome shotgun sequence	29912..30346	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDV010000077.1 TPA_asm: Salmonella enterica strain AUSMDU00018581 SAMN37985262-rid20010873.guided.40, whole genome shotgun sequence	3162..3596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165755.1_PDT001961869.1_genomic.fna	Salmonella_enterica	0.5205	79.134 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDW010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00017292 SAMN37985264-rid20012403.denovo.004, whole genome shotgun sequence	12854..13288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDW010000113.1 TPA_asm: Salmonella enterica strain AUSMDU00017292 SAMN37985264-rid20012403.guided.056, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165775.1_PDT001961865.1_genomic.fna	Salmonella_enterica	0.5198	113.336 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEA010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00016827 SAMN37985267-rid20015643.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEA010000079.1 TPA_asm: Salmonella enterica strain AUSMDU00016827 SAMN37985267-rid20015643.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165795.1_PDT001961867.1_genomic.fna	Salmonella_enterica	0.5201	113.336 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDZ010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00016834 SAMN37985265-rid20015653.denovo.07, whole genome shotgun sequence	12897..13331	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDZ010000086.1 TPA_asm: Salmonella enterica strain AUSMDU00016834 SAMN37985265-rid20015653.guided.50, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165815.1_PDT001961868.1_genomic.fna	Salmonella_enterica	0.5208	64.691 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEB010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00037696 SAMN37985031-rid20019073.denovo.005, whole genome shotgun sequence	7523..7957	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEB010000121.1 TPA_asm: Salmonella enterica strain AUSMDU00037696 SAMN37985031-rid20019073.guided.064, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165835.1_PDT001961866.1_genomic.fna	Salmonella_enterica	0.52	121.856 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDY010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00016822 SAMN37985266-rid20012393.denovo.03, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDY010000080.1 TPA_asm: Salmonella enterica strain AUSMDU00016822 SAMN37985266-rid20012393.guided.37, whole genome shotgun sequence	14071..14505	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165865.1_PDT001961870.1_genomic.fna	Salmonella_enterica	0.5205	76.509 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSDX010000024.1 TPA_asm: Salmonella enterica strain AUSMDU00017299 SAMN37985263-rid20016883.denovo.024, whole genome shotgun sequence	12851..13285	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSDX010000118.1 TPA_asm: Salmonella enterica strain AUSMDU00017299 SAMN37985263-rid20016883.guided.052, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165895.1_PDT001961864.1_genomic.fna	Salmonella_enterica	0.5199	113.336 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEC010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00016826 SAMN37985268-rid20014143.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEC010000085.1 TPA_asm: Salmonella enterica strain AUSMDU00016826 SAMN37985268-rid20014143.guided.50, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165915.1_PDT001961863.1_genomic.fna	Salmonella_enterica	0.5207	61.39 KB	25	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSED010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00018738 SAMN37985269-rid20018053.denovo.003, whole genome shotgun sequence	12854..13288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSED010000141.1 TPA_asm: Salmonella enterica strain AUSMDU00018738 SAMN37985269-rid20018053.guided.060, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165935.1_PDT001961862.1_genomic.fna	Salmonella_enterica	0.5199	121.047 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEE010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00016833 SAMN37985270-rid20016873.denovo.06, whole genome shotgun sequence	12866..13300	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEE010000085.1 TPA_asm: Salmonella enterica strain AUSMDU00016833 SAMN37985270-rid20016873.guided.51, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165955.1_PDT001961859.1_genomic.fna	Salmonella_enterica	0.52	129.23 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEG010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00016825 SAMN37985273-rid20014133.denovo.05, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEG010000078.1 TPA_asm: Salmonella enterica strain AUSMDU00016825 SAMN37985273-rid20014133.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165975.1_PDT001961860.1_genomic.fna	Salmonella_enterica	0.52	80.337 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEH010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00018740 SAMN37985272-rid20016863.denovo.06, whole genome shotgun sequence	12865..13299	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEH010000097.1 TPA_asm: Salmonella enterica strain AUSMDU00018740 SAMN37985272-rid20016863.guided.54, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033165995.1_PDT001961858.1_genomic.fna	Salmonella_enterica	0.5199	98.024 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEJ010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00016823 SAMN37985274-rid20019063.denovo.04, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEJ010000087.1 TPA_asm: Salmonella enterica strain AUSMDU00016823 SAMN37985274-rid20019063.guided.47, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166015.1_PDT001961857.1_genomic.fna	Salmonella_enterica	0.5204	113.336 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEI010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00049591 SAMN37985032-rid20015633.denovo.04, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEI010000094.1 TPA_asm: Salmonella enterica strain AUSMDU00049591 SAMN37985032-rid20015633.guided.52, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166035.1_PDT001961861.1_genomic.fna	Salmonella_enterica	0.5201	100.831 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEF010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00016836 SAMN37985271-rid20010863.denovo.05, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEF010000090.1 TPA_asm: Salmonella enterica strain AUSMDU00016836 SAMN37985271-rid20010863.guided.54, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166055.1_PDT001961856.1_genomic.fna	Salmonella_enterica	0.5207	82.858 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEK010000016.1 TPA_asm: Salmonella enterica strain AUSMDU00017319 SAMN37985275-rid20012383.denovo.016, whole genome shotgun sequence	12851..13285	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEK010000111.1 TPA_asm: Salmonella enterica strain AUSMDU00017319 SAMN37985275-rid20012383.guided.053, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166075.1_PDT001961855.1_genomic.fna	Salmonella_enterica	0.5204	79.908 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEL010000002.1 TPA_asm: Salmonella enterica strain AUSMDU00017329 SAMN37985276-rid20015623.denovo.002, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEL010000124.1 TPA_asm: Salmonella enterica strain AUSMDU00017329 SAMN37985276-rid20015623.guided.036, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166095.1_PDT001961854.1_genomic.fna	Salmonella_enterica	0.5203	97.018 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEM010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00018737 SAMN37985277-rid20014123.denovo.004, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEM010000100.1 TPA_asm: Salmonella enterica strain AUSMDU00018737 SAMN37985277-rid20014123.guided.037, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166115.1_PDT001961853.1_genomic.fna	Salmonella_enterica	0.5204	80.703 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEN010000015.1 TPA_asm: Salmonella enterica strain AUSMDU00018580 SAMN37985278-rid20018043.denovo.015, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEN010000110.1 TPA_asm: Salmonella enterica strain AUSMDU00018580 SAMN37985278-rid20018043.guided.059, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166135.1_PDT001961852.1_genomic.fna	Salmonella_enterica	0.52	121.584 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEO010000020.1 TPA_asm: Salmonella enterica strain AUSMDU00018561 SAMN37985279-rid20016853.denovo.20, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEO010000085.1 TPA_asm: Salmonella enterica strain AUSMDU00018561 SAMN37985279-rid20016853.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166155.1_PDT001961850.1_genomic.fna	Salmonella_enterica	0.5208	64.655 KB	27	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEQ010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00017308 SAMN37985281-rid20016843.denovo.007, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEQ010000147.1 TPA_asm: Salmonella enterica strain AUSMDU00017308 SAMN37985281-rid20016843.guided.042, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166175.1_PDT001961851.1_genomic.fna	Salmonella_enterica	0.5203	90.382 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEP010000013.1 TPA_asm: Salmonella enterica strain AUSMDU00018736 SAMN37985280-rid20010853.denovo.13, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEP010000097.1 TPA_asm: Salmonella enterica strain AUSMDU00018736 SAMN37985280-rid20010853.guided.40, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166195.1_PDT001961848.1_genomic.fna	Salmonella_enterica	0.52	129.232 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSER010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00016835 SAMN37985283-rid20019053.denovo.05, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSER010000080.1 TPA_asm: Salmonella enterica strain AUSMDU00016835 SAMN37985283-rid20019053.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166215.1_PDT001961849.1_genomic.fna	Salmonella_enterica	0.5205	85.62 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSES010000018.1 TPA_asm: Salmonella enterica strain AUSMDU00017167 SAMN37985282-rid20014113.denovo.018, whole genome shotgun sequence	12887..13321	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSES010000106.1 TPA_asm: Salmonella enterica strain AUSMDU00017167 SAMN37985282-rid20014113.guided.037, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166235.1_PDT001961846.1_genomic.fna	Salmonella_enterica	0.5202	135.417 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEU010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00051954 SAMN37985033-rid20012373.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEU010000075.1 TPA_asm: Salmonella enterica strain AUSMDU00051954 SAMN37985033-rid20012373.guided.32, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166255.1_PDT001961847.1_genomic.fna	Salmonella_enterica	0.5203	94.841 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSET010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00017180 SAMN37985284-rid20014103.denovo.003, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSET010000099.1 TPA_asm: Salmonella enterica strain AUSMDU00017180 SAMN37985284-rid20014103.guided.051, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166275.1_PDT001961844.1_genomic.fna	Salmonella_enterica	0.52	147.305 KB	11	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEW010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00017200 SAMN37985286-rid20014093.denovo.08, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEW010000065.1 TPA_asm: Salmonella enterica strain AUSMDU00017200 SAMN37985286-rid20014093.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166295.1_PDT001961845.1_genomic.fna	Salmonella_enterica	0.5207	80.129 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEV010000017.1 TPA_asm: Salmonella enterica strain AUSMDU00017302 SAMN37985285-rid20015613.denovo.017, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEV010000119.1 TPA_asm: Salmonella enterica strain AUSMDU00017302 SAMN37985285-rid20015613.guided.059, whole genome shotgun sequence	14306..14740	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166315.1_PDT001961843.1_genomic.fna	Salmonella_enterica	0.5201	84.251 KB	18	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEX010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00017199 SAMN37985287-rid20018033.denovo.004, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEX010000106.1 TPA_asm: Salmonella enterica strain AUSMDU00017199 SAMN37985287-rid20018033.guided.041, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166335.1_PDT001961842.1_genomic.fna	Salmonella_enterica	0.5201	146.725 KB	12	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFA010000010.1 TPA_asm: Salmonella enterica strain AUSMDU00017202 SAMN37985288-rid20014083.denovo.10, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFA010000066.1 TPA_asm: Salmonella enterica strain AUSMDU00017202 SAMN37985288-rid20014083.guided.29, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166355.1_PDT001961841.1_genomic.fna	Salmonella_enterica	0.52	135.231 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEZ010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00016840 SAMN37985289-rid20010843.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEZ010000081.1 TPA_asm: Salmonella enterica strain AUSMDU00016840 SAMN37985289-rid20010843.guided.42, whole genome shotgun sequence	13835..14269	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166375.1_PDT001961840.1_genomic.fna	Salmonella_enterica	0.5198	143.418 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSEY010000012.1 TPA_asm: Salmonella enterica strain AUSMDU00017188 SAMN37985290-rid20016833.denovo.12, whole genome shotgun sequence	12888..13322	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSEY010000068.1 TPA_asm: Salmonella enterica strain AUSMDU00017188 SAMN37985290-rid20016833.guided.35, whole genome shotgun sequence	14070..14504	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166395.1_PDT001961838.1_genomic.fna	Salmonella_enterica	0.52	114.531 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFC010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017178 SAMN37985292-rid20019043.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFC010000082.1 TPA_asm: Salmonella enterica strain AUSMDU00017178 SAMN37985292-rid20019043.guided.36, whole genome shotgun sequence	14004..14438	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166415.1_PDT001961839.1_genomic.fna	Salmonella_enterica	0.5201	113.336 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFB010000010.1 TPA_asm: Salmonella enterica strain AUSMDU00017190 SAMN37985291-rid20014073.denovo.10, whole genome shotgun sequence	12897..13331	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFB010000090.1 TPA_asm: Salmonella enterica strain AUSMDU00017190 SAMN37985291-rid20014073.guided.41, whole genome shotgun sequence	9398..9832	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166435.1_PDT001961836.1_genomic.fna	Salmonella_enterica	0.5201	97.871 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFE010000016.1 TPA_asm: Salmonella enterica strain AUSMDU00017169 SAMN37985294-rid20012363.denovo.16, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFE010000096.1 TPA_asm: Salmonella enterica strain AUSMDU00017169 SAMN37985294-rid20012363.guided.44, whole genome shotgun sequence	11533..11967	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166455.1_PDT001961837.1_genomic.fna	Salmonella_enterica	0.5199	137.24 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFD010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017195 SAMN37985293-rid20014063.denovo.06, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFD010000081.1 TPA_asm: Salmonella enterica strain AUSMDU00017195 SAMN37985293-rid20014063.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166475.1_PDT001961835.1_genomic.fna	Salmonella_enterica	0.5206	97.724 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFF010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051961 SAMN37985034-rid20015603.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFF010000097.1 TPA_asm: Salmonella enterica strain AUSMDU00051961 SAMN37985034-rid20015603.guided.37, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166495.1_PDT001961832.1_genomic.fna	Salmonella_enterica	0.5201	106.233 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFH010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00018570 SAMN37985297-rid20014043.denovo.06, whole genome shotgun sequence	12897..13331	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFH010000092.1 TPA_asm: Salmonella enterica strain AUSMDU00018570 SAMN37985297-rid20014043.guided.45, whole genome shotgun sequence	10146..10580	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166515.1_PDT001961833.1_genomic.fna	Salmonella_enterica	0.5201	135.233 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFG010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00018741 SAMN37985296-rid20018023.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFG010000075.1 TPA_asm: Salmonella enterica strain AUSMDU00018741 SAMN37985296-rid20018023.guided.34, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166535.1_PDT001961834.1_genomic.fna	Salmonella_enterica	0.5205	108.111 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFI010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017309 SAMN37985295-rid20014053.denovo.006, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFI010000105.1 TPA_asm: Salmonella enterica strain AUSMDU00017309 SAMN37985295-rid20014053.guided.054, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166555.1_PDT001961831.1_genomic.fna	Salmonella_enterica	0.5198	110.572 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFJ010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00018567 SAMN37985298-rid20010833.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFJ010000085.1 TPA_asm: Salmonella enterica strain AUSMDU00018567 SAMN37985298-rid20010833.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166575.1_PDT001961829.1_genomic.fna	Salmonella_enterica	0.5199	109.225 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFL010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00018575 SAMN37985300-rid20014033.denovo.03, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFL010000100.1 TPA_asm: Salmonella enterica strain AUSMDU00018575 SAMN37985300-rid20014033.guided.44, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166595.1_PDT001961828.1_genomic.fna	Salmonella_enterica	0.5205	97.91 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFM010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017315 SAMN37985301-rid20019033.denovo.06, whole genome shotgun sequence	12854..13288	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFM010000096.1 TPA_asm: Salmonella enterica strain AUSMDU00017315 SAMN37985301-rid20019033.guided.56, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166615.1_PDT001961826.1_genomic.fna	Salmonella_enterica	0.5198	121.584 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFQ010000013.1 TPA_asm: Salmonella enterica strain AUSMDU00018554 SAMN37985303-rid20012353.denovo.13, whole genome shotgun sequence	30078..30512	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFQ010000086.1 TPA_asm: Salmonella enterica strain AUSMDU00018554 SAMN37985303-rid20012353.guided.36, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166625.1_PDT001961830.1_genomic.fna	Salmonella_enterica	0.5206	79.608 KB	21	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFK010000002.1 TPA_asm: Salmonella enterica strain AUSMDU00017336 SAMN37985299-rid20016823.denovo.002, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFK010000117.1 TPA_asm: Salmonella enterica strain AUSMDU00017336 SAMN37985299-rid20016823.guided.058, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166655.1_PDT001961827.1_genomic.fna	Salmonella_enterica	0.5199	143.626 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFN010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00016828 SAMN37985302-rid20014023.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFN010000069.1 TPA_asm: Salmonella enterica strain AUSMDU00016828 SAMN37985302-rid20014023.guided.33, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166675.1_PDT001961825.1_genomic.fna	Salmonella_enterica	0.5199	121.737 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFP010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00016824 SAMN37985304-rid20015593.denovo.04, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFP010000082.1 TPA_asm: Salmonella enterica strain AUSMDU00016824 SAMN37985304-rid20015593.guided.45, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166695.1_PDT001961824.1_genomic.fna	Salmonella_enterica	0.5201	111.884 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFO010000021.1 TPA_asm: Salmonella enterica strain AUSMDU00049589 SAMN37985008-rid20014013.denovo.21, whole genome shotgun sequence	12883..13317	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFO010000090.1 TPA_asm: Salmonella enterica strain AUSMDU00049589 SAMN37985008-rid20014013.guided.35, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166715.1_PDT001961823.1_genomic.fna	Salmonella_enterica	0.5205	83.236 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFR010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00051061 SAMN37985035-rid20018013.denovo.005, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFR010000109.1 TPA_asm: Salmonella enterica strain AUSMDU00051061 SAMN37985035-rid20018013.guided.046, whole genome shotgun sequence	11595..12029	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166755.1_PDT001961822.1_genomic.fna	Salmonella_enterica	0.5205	80.33 KB	20	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFT010000013.1 TPA_asm: Salmonella enterica strain AUSMDU00017177 SAMN37985305-rid20012343.denovo.013, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFT010000111.1 TPA_asm: Salmonella enterica strain AUSMDU00017177 SAMN37985305-rid20012343.guided.058, whole genome shotgun sequence	22..456	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166775.1_PDT001961821.1_genomic.fna	Salmonella_enterica	0.5198	113.336 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFS010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00017184 SAMN37985306-rid20010823.denovo.05, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFS010000088.1 TPA_asm: Salmonella enterica strain AUSMDU00017184 SAMN37985306-rid20010823.guided.40, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166795.1_PDT001961820.1_genomic.fna	Salmonella_enterica	0.52	109.172 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFV010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00017314 SAMN37985307-rid20015583.denovo.05, whole genome shotgun sequence	30041..30475	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFV010000096.1 TPA_asm: Salmonella enterica strain AUSMDU00017314 SAMN37985307-rid20015583.guided.38, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166815.1_PDT001961818.1_genomic.fna	Salmonella_enterica	0.52	113.336 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFY010000009.1 TPA_asm: Salmonella enterica strain AUSMDU00018560 SAMN37985367-rid20010813.denovo.09, whole genome shotgun sequence	12894..13328	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFY010000089.1 TPA_asm: Salmonella enterica strain AUSMDU00018560 SAMN37985367-rid20010813.guided.53, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166835.1_PDT001961819.1_genomic.fna	Salmonella_enterica	0.5206	85.016 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFU010000005.1 TPA_asm: Salmonella enterica strain AUSMDU00018735 SAMN37985366-rid20012333.denovo.005, whole genome shotgun sequence	12895..13329	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFU010000102.1 TPA_asm: Salmonella enterica strain AUSMDU00018735 SAMN37985366-rid20012333.guided.063, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166855.1_PDT001961817.1_genomic.fna	Salmonella_enterica	0.52	135.419 KB	14	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFW010000008.1 TPA_asm: Salmonella enterica strain AUSMDU00018573 SAMN37985368-rid20014003.denovo.08, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFW010000076.1 TPA_asm: Salmonella enterica strain AUSMDU00018573 SAMN37985368-rid20014003.guided.45, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166875.1_PDT001961816.1_genomic.fna	Salmonella_enterica	0.5201	121.581 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFX010000016.1 TPA_asm: Salmonella enterica strain AUSMDU00018563 SAMN37985369-rid20010803.denovo.16, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFX010000091.1 TPA_asm: Salmonella enterica strain AUSMDU00018563 SAMN37985369-rid20010803.guided.58, whole genome shotgun sequence	3162..3596	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166895.1_PDT001961815.1_genomic.fna	Salmonella_enterica	0.5207	77.65 KB	22	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSFZ010000014.1 TPA_asm: Salmonella enterica strain AUSMDU00018576 SAMN37985370-rid20016813.denovo.014, whole genome shotgun sequence	12861..13295	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSFZ010000129.1 TPA_asm: Salmonella enterica strain AUSMDU00018576 SAMN37985370-rid20016813.guided.058, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166905.1_PDT001961814.1_genomic.fna	Salmonella_enterica	0.52	129.466 KB	15	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSGB010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017185 SAMN37985371-rid20010793.denovo.06, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSGB010000085.1 TPA_asm: Salmonella enterica strain AUSMDU00017185 SAMN37985371-rid20010793.guided.41, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166935.1_PDT001961812.1_genomic.fna	Salmonella_enterica	0.5206	82.473 KB	19	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSGC010000013.1 TPA_asm: Salmonella enterica strain AUSMDU00017182 SAMN37985373-rid20012323.denovo.013, whole genome shotgun sequence	29909..30343	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSGC010000105.1 TPA_asm: Salmonella enterica strain AUSMDU00017182 SAMN37985373-rid20012323.guided.045, whole genome shotgun sequence	10187..10621	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166955.1_PDT001961813.1_genomic.fna	Salmonella_enterica	0.5202	110.292 KB	17	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSGA010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00017191 SAMN37985372-rid20019023.denovo.03, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSGA010000097.1 TPA_asm: Salmonella enterica strain AUSMDU00017191 SAMN37985372-rid20019023.guided.39, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166975.1_PDT001961811.1_genomic.fna	Salmonella_enterica	0.5204	97.724 KB	16	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSGD010000006.1 TPA_asm: Salmonella enterica strain AUSMDU00017186 SAMN37985374-rid20012313.denovo.06, whole genome shotgun sequence	29908..30342	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSGD010000096.1 TPA_asm: Salmonella enterica strain AUSMDU00017186 SAMN37985374-rid20012313.guided.47, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033166995.1_PDT001961809.1_genomic.fna	Salmonella_enterica	0.5209	70.734 KB	21	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSGG010000003.1 TPA_asm: Salmonella enterica strain AUSMDU00016870 SAMN37985375-rid20010783.denovo.003, whole genome shotgun sequence	12873..13307	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSGG010000121.1 TPA_asm: Salmonella enterica strain AUSMDU00016870 SAMN37985375-rid20010783.guided.068, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033167015.1_PDT001961810.1_genomic.fna	Salmonella_enterica	0.5206	75.697 KB	22	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSGE010000004.1 TPA_asm: Salmonella enterica strain AUSMDU00051969 SAMN37985042-rid20015573.denovo.004, whole genome shotgun sequence	12897..13331	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSGE010000123.1 TPA_asm: Salmonella enterica strain AUSMDU00051969 SAMN37985042-rid20015573.guided.062, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033167035.1_PDT001961808.1_genomic.fna	Salmonella_enterica	0.5201	144.445 KB	13	aroC_1,dnaN_1,hemD_1,hisD_1,purE_1,sucA_1,thrA_5	1	9:d:-	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_1	dnaN	100	100	dnaN_1	hemD	100	100	hemD_1	hisD	100	100	hisD_1	purE	100	100	purE_1	sucA	100	100	sucA_1	thrA	100	100	thrA_5	9	d	-	Salmonella enterica subspecies enterica (subspecies I)	Typhi		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.47	435/438	DAQSGF010000007.1 TPA_asm: Salmonella enterica strain AUSMDU00017298 SAMN37985376-rid20010773.denovo.07, whole genome shotgun sequence	29907..30341	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.47	435/438	DAQSGF010000079.1 TPA_asm: Salmonella enterica strain AUSMDU00017298 SAMN37985376-rid20010773.guided.51, whole genome shotgun sequence	16440..16874	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																				
GCA_033169695.1_PDT001962285.1_genomic.fna	Salmonella_enterica	0.5211	489.886 KB	3	aroC_5,dnaN_2,hemD_3,hisD_7,purE_6,sucA_6,thrA_11	11	9:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	gyrA_p.D87Y	2	IncFIB(S),IncFII(S)	aroC	100	100	aroC_5	dnaN	100	100	dnaN_2	hemD	100	100	hemD_3	hisD	100	100	hisD_7	purE	100	100	purE_6	sucA	100	100	sucA_6	thrA	100	100	thrA_11	9	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Enteritidis	Detected Sdf I that is characteristic of commonly circulating strains of serotype Enteritidis.	O	H1_fliC	H2_fljB	aac(6')-Iaa	96.35	438/438	ABOLON010000001.1 Salmonella enterica strain PNUSAS396567 SAMN38037536-rid20014873.denovo.01, whole genome shotgun sequence	774367..774804	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	96.35	438/438	ABOLON010000025.1 Salmonella enterica strain PNUSAS396567 SAMN38037536-rid20014873.guided.20, whole genome shotgun sequence	9952..10389	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										gyrA p.D87Y	GAC -> TAC	D -> Y	Nalidixic Acid, Ciprofloxacin	7492118																enterobacteriales	IncFIB(S)	98.91	643 / 643	ABOLON010000018.1 Salmonella enterica strain PNUSAS396567 SAMN38037536-rid20014873.denovo.19, whole genome shotgun sequence	6818..7460	enterobacteriales	IncFII(S)	100	262 / 262	ABOLON010000014.1 Salmonella enterica strain PNUSAS396567 SAMN38037536-rid20014873.denovo.15, whole genome shotgun sequence	5032..5293																																																avrA	ABOLON010000002.1	553636..554505	99.54	870	0						
GCA_033169735.1_PDT001962238.1_genomic.fna	Salmonella_enterica	0.5208	189.432 KB	6	aroC_146,dnaN_32,hemD_40,hisD_33,purE_139,sucA_79,thrA_324	2606	13:g,m:-	1	aac(6')-Iaa,aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_146	dnaN	100	100	dnaN_32	hemD	100	100	hemD_40	hisD	100	100	hisD_33	purE	100	100	purE_139	sucA	100	100	sucA_79	thrA	100	100	thrA_324	13	g,m	-	Salmonella enterica subspecies enterica (subspecies I)	Agbeni		O	H1_fliC	H2_fljB	aac(6')-Iaa	97.72	438/438	ABOLOM010000001.1 Salmonella enterica strain PNUSAS396467 SAMN38036889-rid20016133.denovo.01, whole genome shotgun sequence	503346..503783	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	97.72	438/438	ABOLOM010000035.1 Salmonella enterica strain PNUSAS396467 SAMN38036889-rid20016133.guided.22, whole genome shotgun sequence	16435..16872	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																										parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	ABOLOM010000002.1	144853..145722	99.31	870	0						
GCA_033169755.1_PDT001962237.1_genomic.fna	Salmonella_enterica	0.5219	271.707 KB	7	aroC_14,dnaN_72,hemD_21,hisD_12,purE_6,sucA_19,thrA_15	214	8:l,v:1,2	1	aac(6')-Iaa,aac(6')-Iaa	0		0		aroC	100	100	aroC_14	dnaN	100	100	dnaN_72	hemD	100	100	hemD_21	hisD	100	100	hisD_12	purE	100	100	purE_6	sucA	100	100	sucA_19	thrA	100	100	thrA_15	8	l,v	1,2	Salmonella enterica subspecies enterica (subspecies I)	Litchfield		O	H1_fliC	H2_fljB	aac(6')-Iaa	98.4	438/438	ABOLOO010000002.1 Salmonella enterica strain PNUSAS396463 SAMN38036893-rid20013073.denovo.02, whole genome shotgun sequence	37882..38319	Amikacin, Tobramycin	NC_003197	aac(6')-Iaa	98.4	438/438	ABOLOO010000040.1 Salmonella enterica strain PNUSAS396463 SAMN38036893-rid20013073.guided.28, whole genome shotgun sequence	2376..2813	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																																									avrA	ABOLOO010000007.1	39348..40217	99.77	870	0						
GCA_947044265.1_SA192_genomic.fna	Salmonella_enterica	0.5263	42.472 KB	30	aroC_76,dnaN_14,hemD_3,hisD_77,purE_64,No hit found,thrA_67	Unknown	-:i:z6	1	aac(6')-Iaa	4	gyrA_p.S83F,gyrA_p.D87N,parC_p.T57S,parC_p.S80I	0		aroC	100	100	aroC_76	dnaN	100	100	dnaN_14	hemD	100	100	hemD_3	hisD	100	100	hisD_77	purE	100	100	purE_64	sucA			No hit found	thrA	100	100	thrA_67	-	i	z6	Salmonella enterica subspecies enterica (subspecies I)	I -:i:z6	O antigen was not detected. This result may be due to a rough strain that has deleted the rfb region. For raw reads input, the k-mer workflow is sometimes more sensitive than the microassembly workflow in detecting O antigen. Caution should be used with this approach because the k-mer result may be due to low levels of contamination.	O	H1_fliC	H2_fljB	aac(6')-Iaa	98.63	438/438	OX345228.1 Salmonella enterica subsp. enterica strain SV10192 genome assembly, chromosome: 42	15403..15840	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	gyrA p.S83F	TCC -> TTC	S -> F	Nalidixic Acid, Ciprofloxacin	10471553	gyrA p.D87N	GAC -> AAC	D -> N	Nalidixic Acid, Ciprofloxacin	10471553	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468	parC p.S80I	AGC -> ATC	S -> I	Nalidixic Acid, Ciprofloxacin	15388468																																																												avrA	OX345195.1	2037..2906	99.31	870	0						
GCA_947044355.1_SA193_genomic.fna	Salmonella_enterica	0.5267	45.158 KB	31	aroC_43,dnaN_47,hemD_49,hisD_16,purE_41,sucA_15,thrA_3	241	-:l,v:l,z13,z28	1	aac(6')-Iaa	1	parC_p.T57S	0		aroC	100	100	aroC_43	dnaN	100	100	dnaN_47	hemD	100	100	hemD_49	hisD	100	100	hisD_16	purE	100	100	purE_41	sucA	100	100	sucA_15	thrA	100	100	thrA_3	-	l,v	l,z13,z28	-	- -:l,v:l,z13,z28	The input genome cannot be identified as Salmonella. Check the input for taxonomic ID, contamination, or sequencing quality.	O	H1_fliC	H2_fljB	aac(6')-Iaa	97.95	438/438	OX345345.1 Salmonella enterica subsp. enterica strain SV10193 genome assembly, chromosome: 7	86805..87242	Amikacin, Tobramycin	NC_003197																																																																																																																																																																																																																																																																																																																																																																																																																																																																	parC p.T57S	ACC -> AGC	T -> S	Nalidixic Acid, Ciprofloxacin	15388468																																																																											avrA	OX345377.1	8556..9425	98.966	870	0						
